Citrus Sinensis ID: 020565

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320----
Protein Sequence
MDGEELTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFVDLQNHKYSKQKIEETIECQLRYPSFEEAISVPWRALPRKASKLYFALRVLEQFEEAEGRSPGEISIADLPAVLKLKKELCEANALNASHVTDSLLERLIIGTREFTPVCAVVGGILGQEVIKAISCKGEPLKNFFFFDIMDGKGVVEDVSSPKKESK
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHHHHHHHHHHHHHHHcccEEEEcccccHHHHHHHHHHccccEEEEEcccccccccccccEEccccccccccccHHHHHHHHHHHHccccEEEEEEcccccccccccccccEEEEccccHHHHHHHHHHHHHcccccEEEEEEEEccEEEEEEEccccccccccccHHHHHHccccccHHHccccccccccccHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHcccccccHHHHHcHHHHHHHHHHHHccccccccEEEEEccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccHHHHHHHHHHHHHHcHHHHHHHHHccEEEEEccHHHHHHHHHHHHHcccEEEEEccccEcHHHccccEEccccccccccccHHHHHHHHHHHHcccEEEEEcccccccccHHHHHcccEEEEEcccHHHHHHHHHHHHHHccccEEEEccccccEEEEEEEccccEEEEcccccccccccccccHHHHHcccHcccccccHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHccccHccccHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEcccccEEEEEccccccccc
Coil and Loop (DISEMBL)
MDGEELTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVgsltlmddrvVTEEAwsanflippdenvyggktIAEVCCDslkdfnpmvRVSVekgdlssldgefydkfDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFVDLQNHKYSKQKIEETIEcqlrypsfeeaisvpwralprKASKLYFALRVLEQFeeaegrspgeisiaDLPAVLKLKKELCEANALNASHVTDSLLERLIigtreftpvcavVGGILGQEVIKAIsckgeplknffffdimdgkgvvedvsspkkesk
Flexible Loop (DISEMBL)
mdgeelteQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAwsanflippdenvygGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEFYDKFDVVVVSCCSVttkklinekcrklskrVAFYTVDCRDSCGEIFVDLQNHKYSKQKIEETIECQLRYPSFEEAISVPWRALPRKASKLYFALRVLEQFeeaegrspgeisIADLPAVLKLKKELCEANalnashvtdSLLERLIIGTREFTPVCAVVGGILGQEVIKAISCKGEPLKNFFffdimdgkgvvedvsspkkesk
Low Complexity Region (SEG)
MDGEELTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEFYDKFDvvvvsccsvttkkLINEKCRKLSKRVAFYTVDCRDSCGEIFVDLQNHKYSKQKIEETIECQLRYPSFEEAISVPWRALPRKASKLYFALRVLEQFEEAEGRSPGEISIADLPAVLKLKKELCEANALNASHVTDSLLERLIIGTREFTPVCAVVGGILGQEVIKAISCKGEPLKNFFFFDIMDGKGVVEDVSSPKKESK
Disordered region (IsUnstruct)
***********ALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFVDLQNHKYSKQKIEETIECQLRYPSFEEAISVPWRALPRKASKLYFALRVLEQFEE******GEISIADLPAVLKLKKELCEANALNASHVTDSLLERLIIGTREFTPVCAVVGGILGQEVIKAISCKGEPLKNFFFFDIMDGKGVV***********
Disordered Region (DISOPRED)
****ELT*QETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFVDLQNHKYSKQKIEETIECQLRYPSFEEAISVPWRALPRKASKLYFALRVLEQFEEAEGRSPGEISIADLPAVLKLKKELCEANALNASHVTDSLLERLIIGTREFTPVCAVVGGILGQEVIKAISCKGEPLKNFFFFDIMDGKGVV***********
Disordered Region (DISEMBL)
*********ETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFVDLQNHKYSKQKIEETIECQLRYPSFEEAISVPWRALPRKASKLYFALRVLEQFEEAEGRSPGEISIADLPAVLKLKKELCEANALNASHVTDSLLERLIIGTREFTPVCAVVGGILGQEVIKAISCKGEPLKNFFFFDIMDGKGVV***********
Disordered Region (DISPRO)
*****LTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFVDLQNHKYSKQKIEETIECQLRYPSFEEAISVPWRALPRKASKLYFALRVLEQFEEAEGRSPGEISIADLPAVLKLKKELCEANALNASHVTDSLLERLIIGTREFTPVCAVVGGILGQEVIKAISCKGEPLKNFFFFDIMDGKGVVEDVSS******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDGEELTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFVDLQNHKYSKQKIEETIECQLRYPSFEEAISVPWRALPRKASKLYFALRVLEQFEEAEGRSPGEISIADLPAVLKLKKELCEANALNASHVTDSLLERLIIGTREFTPVCAVVGGILGQEVIKAISCKGEPLKNFFFFDIMDGKGVVEDVSSPKKESK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	324	2.2.26 [Sep-21-2011]
Q8VY78	322	SUMO-activating enzyme su	yes	no	0.978	0.984	0.735	1e-141
P0DI13	320	SUMO-activating enzyme su	no	no	0.978	0.990	0.725	1e-140
P0DI12	320	SUMO-activating enzyme su	no	no	0.978	0.990	0.725	1e-140
A2VE14	346	SUMO-activating enzyme su	yes	no	0.938	0.878	0.336	3e-46
Q6IQS6	348	SUMO-activating enzyme su	yes	no	0.941	0.876	0.345	4e-46
Q54WI4	330	SUMO-activating enzyme su	yes	no	0.938	0.921	0.345	7e-46
Q8JGT5	344	SUMO-activating enzyme su	N/A	no	0.925	0.872	0.332	1e-45
Q5NVN7	346	SUMO-activating enzyme su	yes	no	0.938	0.878	0.330	9e-45
Q9UBE0	346	SUMO-activating enzyme su	yes	no	0.938	0.878	0.330	9e-45
Q6AXQ0	349	SUMO-activating enzyme su	yes	no	0.913	0.848	0.329	3e-44

>sp|Q8VY78|SAE1A_ARATH SUMO-activating enzyme subunit 1A OS=Arabidopsis thaliana GN=SAE1A PE=2 SV=1

 Score =  500 bits (1287), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 233/317 (73%), Positives = 279/317 (88%)

Query: 1   MDGEELTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTL 60
           MDGEELTEQETALYDRQIRVWGA+AQRRL+K+HILV G+KGTVAEFCKNIVLAGVGS+TL
Sbjct: 1   MDGEELTEQETALYDRQIRVWGANAQRRLTKAHILVSGIKGTVAEFCKNIVLAGVGSVTL 60

Query: 61  MDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEF 120
           MDDR+   EA +ANFLIPPDENVY GKT+AE+C DSLKDFNPMVRVSVEKGDLS L  +F
Sbjct: 61  MDDRLANMEALNANFLIPPDENVYSGKTVAEICSDSLKDFNPMVRVSVEKGDLSMLGTDF 120

Query: 121 YDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFVDLQNHKYSKQKIE 180
           +++FDVVV+   S  TKK +NEKCRKL KRVAFYTVDCRDSCGEIFVDLQ++KY+K+K+E
Sbjct: 121 FEQFDVVVIGYGSRATKKYVNEKCRKLKKRVAFYTVDCRDSCGEIFVDLQDYKYTKKKLE 180

Query: 181 ETIECQLRYPSFEEAISVPWRALPRKASKLYFALRVLEQFEEAEGRSPGEISIADLPAVL 240
           E +EC+L +PSF+EAISVPW+ +PR+ +KLYFA+RV+E FEE+EGR  GE S+ DL  VL
Sbjct: 181 EMVECELNFPSFQEAISVPWKPIPRRTAKLYFAMRVIEVFEESEGRKHGECSLLDLARVL 240

Query: 241 KLKKELCEANALNASHVTDSLLERLIIGTREFTPVCAVVGGILGQEVIKAISCKGEPLKN 300
           ++KK+LCEAN+++ SH+ D LLERLI GT EF PVCA+VGGIL QEVIKA+S KG+PLKN
Sbjct: 241 EIKKQLCEANSVSESHIPDILLERLITGTTEFPPVCAIVGGILAQEVIKAVSGKGDPLKN 300

Query: 301 FFFFDIMDGKGVVEDVS 317
           FF++D  DGKGV+ED+S
Sbjct: 301 FFYYDGEDGKGVMEDIS 317

The dimeric enzyme acts as a E1 ligase for SUMO1 and SUMO2. It mediates ATP-dependent activation of SUMO proteins and formation of a thioester with a conserved cysteine residue on SAE2. Functionally redundant with its paralog SAE1B.
Arabidopsis thaliana (taxid: 3702)

>sp|P0DI13|SA1B2_ARATH SUMO-activating enzyme subunit 1B-2 OS=Arabidopsis thaliana GN=SAE1B-2 PE=2 SV=1

 Score =  496 bits (1278), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 230/317 (72%), Positives = 276/317 (87%)

Query: 1   MDGEELTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTL 60
           MDG+ELTEQETALYDRQIRVWGA AQRRLSKSH+LV G+KGTVAEFCKNIVLAGVGS+TL
Sbjct: 1   MDGDELTEQETALYDRQIRVWGAGAQRRLSKSHVLVSGIKGTVAEFCKNIVLAGVGSVTL 60

Query: 61  MDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEF 120
           +DDR+VT E ++ANFLI PDEN Y GKT+AE+CCDSLKDFNPMV VS+EKGDLS+L  +F
Sbjct: 61  LDDRLVTTEVFNANFLILPDENAYVGKTVAEICCDSLKDFNPMVHVSIEKGDLSTLGVDF 120

Query: 121 YDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFVDLQNHKYSKQKIE 180
           ++KFDVVV+   S  TKK +NEKCR L+K VAFYTVDCR SCGEIFVDLQN+KY+K+K++
Sbjct: 121 FEKFDVVVIGYSSRATKKAVNEKCRNLAKDVAFYTVDCRGSCGEIFVDLQNYKYTKKKLD 180

Query: 181 ETIECQLRYPSFEEAISVPWRALPRKASKLYFALRVLEQFEEAEGRSPGEISIADLPAVL 240
           ET+EC+L +PSFEEA+SVPW+ +PR+ +KLYFA+RV+E FEE EGR PGE S++DLP VL
Sbjct: 181 ETVECELTFPSFEEAVSVPWKPMPRRTAKLYFAMRVIELFEETEGRKPGECSLSDLPRVL 240

Query: 241 KLKKELCEANALNASHVTDSLLERLIIGTREFTPVCAVVGGILGQEVIKAISCKGEPLKN 300
           KLKKELCE N+++ +H+ D LLERL+    EF P CA++GGILGQEVIK IS KGEPLKN
Sbjct: 241 KLKKELCEGNSVSENHIPDILLERLVSNNTEFPPACAIIGGILGQEVIKVISGKGEPLKN 300

Query: 301 FFFFDIMDGKGVVEDVS 317
           FF+FD  DGKGV+ED+S
Sbjct: 301 FFYFDAEDGKGVIEDLS 317

The dimeric enzyme acts as a E1 ligase for SUMO1 and SUMO2. It mediates ATP-dependent activation of SUMO proteins and formation of a thioester with a conserved cysteine residue on SAE2. Functionally redundant with its paralog SAE1A.

Arabidopsis thaliana (taxid: 3702)

>sp|P0DI12|SA1B1_ARATH SUMO-activating enzyme subunit 1B-1 OS=Arabidopsis thaliana GN=SAE1B-1 PE=2 SV=1

 Score =  496 bits (1278), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 230/317 (72%), Positives = 276/317 (87%)

Query: 1   MDGEELTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTL 60
           MDG+ELTEQETALYDRQIRVWGA AQRRLSKSH+LV G+KGTVAEFCKNIVLAGVGS+TL
Sbjct: 1   MDGDELTEQETALYDRQIRVWGAGAQRRLSKSHVLVSGIKGTVAEFCKNIVLAGVGSVTL 60

Query: 61  MDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEF 120
           +DDR+VT E ++ANFLI PDEN Y GKT+AE+CCDSLKDFNPMV VS+EKGDLS+L  +F
Sbjct: 61  LDDRLVTTEVFNANFLILPDENAYVGKTVAEICCDSLKDFNPMVHVSIEKGDLSTLGVDF 120

Query: 121 YDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFVDLQNHKYSKQKIE 180
           ++KFDVVV+   S  TKK +NEKCR L+K VAFYTVDCR SCGEIFVDLQN+KY+K+K++
Sbjct: 121 FEKFDVVVIGYSSRATKKAVNEKCRNLAKDVAFYTVDCRGSCGEIFVDLQNYKYTKKKLD 180

Query: 181 ETIECQLRYPSFEEAISVPWRALPRKASKLYFALRVLEQFEEAEGRSPGEISIADLPAVL 240
           ET+EC+L +PSFEEA+SVPW+ +PR+ +KLYFA+RV+E FEE EGR PGE S++DLP VL
Sbjct: 181 ETVECELTFPSFEEAVSVPWKPMPRRTAKLYFAMRVIELFEETEGRKPGECSLSDLPRVL 240

Query: 241 KLKKELCEANALNASHVTDSLLERLIIGTREFTPVCAVVGGILGQEVIKAISCKGEPLKN 300
           KLKKELCE N+++ +H+ D LLERL+    EF P CA++GGILGQEVIK IS KGEPLKN
Sbjct: 241 KLKKELCEGNSVSENHIPDILLERLVSNNTEFPPACAIIGGILGQEVIKVISGKGEPLKN 300

Query: 301 FFFFDIMDGKGVVEDVS 317
           FF+FD  DGKGV+ED+S
Sbjct: 301 FFYFDAEDGKGVIEDLS 317

The dimeric enzyme acts as a E1 ligase for SUMO1 and SUMO2. It mediates ATP-dependent activation of SUMO proteins and formation of a thioester with a conserved cysteine residue on SAE2. Functionally redundant with its paralog SAE1A.

Arabidopsis thaliana (taxid: 3702)

>sp|A2VE14|SAE1_BOVIN SUMO-activating enzyme subunit 1 OS=Bos taurus GN=SAE1 PE=2 SV=1

 Score =  186 bits (471), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 115/342 (33%), Positives = 181/342 (52%), Gaps = 38/342 (11%)

Query: 3   GEELTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMD 62
           G  ++E+E A YDRQIR+WG +AQ+RL  S +L+ GMKG  AE  KN++LAGV  LT++D
Sbjct: 8   GGGISEEEAAQYDRQIRLWGLEAQKRLRASQVLLVGMKGLGAEIAKNLILAGVKGLTMLD 67

Query: 63  DRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEFYD 122
              V+ E   A FLI        G+  AE   +  ++ NPMV V V+  ++      F+ 
Sbjct: 68  HEQVSPEDPGAQFLI---RTGSVGRNRAEASLERAQNLNPMVDVKVDTENIEKKPESFFT 124

Query: 123 KFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFVDLQNHKYSKQKIE-- 180
           +FD V ++CCS      +++ C K S  + F+T D     G  F +L  H++ ++K +  
Sbjct: 125 QFDAVCLTCCSRDVIVKVDQICHKNS--IKFFTGDVFGYHGYTFANLGEHEFVEEKTKVA 182

Query: 181 --------------------ET--IECQLRYPSFEEAISVPW-----RALPRKASKLYFA 213
                               ET  ++ ++ + S +EA+ V W     +A  ++ +  YF 
Sbjct: 183 KVSQGVEDGPDTKRAKLDSSETTMVKKKVVFCSVKEALEVDWSSDKAKAALKRTTPDYFL 242

Query: 214 LRVLEQFEEAEGRSPGEISIA-DLPAVLKLKKELCEANALNASHVTDSLLERLIIGTREF 272
           L+VL +F   +GR P   +   D   +L+++ ++ +A  +N   + +  +        E 
Sbjct: 243 LQVLLKFRTDKGRDPSSDTFGEDSELLLQIRNDVLDALGVNPDLLPEDFVRYCF---SEM 299

Query: 273 TPVCAVVGGILGQEVIKAISCKGEPLKNFFFFDIMDGKGVVE 314
            PVCAVVGGIL QE++KA+S +  P  NFFFFD M G G+VE
Sbjct: 300 APVCAVVGGILAQEIVKALSQRDPPHNNFFFFDGMKGNGIVE 341

The heterodimer acts as a E1 ligase for SUMO1, SUMO2, SUMO3, and probably SUMO4. It mediates ATP-dependent activation of SUMO proteins followed by formation of a thioester bond between a SUMO protein and a conserved active site cysteine residue on UBA2/SAE2.

Bos taurus (taxid: 9913)

>sp|Q6IQS6|SAE1_DANRE SUMO-activating enzyme subunit 1 OS=Danio rerio GN=sae1 PE=2 SV=1

 Score =  185 bits (469), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 119/344 (34%), Positives = 184/344 (53%), Gaps = 39/344 (11%)

Query: 6   LTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV 65
           ++E+E A YDRQIR+WG DAQ+RL  S +L+ G++G  AE  KN++LAGV  LTL+D   
Sbjct: 12  ISEEEAAQYDRQIRLWGLDAQKRLRGSRVLLVGLRGLGAEVAKNLILAGVKGLTLLDHEQ 71

Query: 66  VTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEFYDKFD 125
           VTEE+  A FLIP D +   G+  A+   +  +  NPMV V  +   + S   +F+ +FD
Sbjct: 72  VTEESRRAQFLIPVDAD---GQNHAQASLERAQFLNPMVEVKADTEPVESKPDDFFFQFD 128

Query: 126 VVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFVDL-QNHKY---------- 174
            V ++ CS      +++ C   S+ +  +  D     G +F DL Q + Y          
Sbjct: 129 AVCLTRCSRDLMVRVDQLC--ASRNIKVFCGDVYGYNGYMFSDLGQEYHYVEEKPKVVKG 186

Query: 175 ----------SKQKIEET----IECQLRYPSFEEAISVPWRALPRKAS-----KLYFALR 215
                      K KI+      ++  + + S +EA+ V W     K+S       YF L+
Sbjct: 187 SNEANDGPEAKKPKIDPNETTMVKKTISFCSLKEALEVDWTTEKAKSSLKRIPADYFLLQ 246

Query: 216 VLEQFEEAEGRSPGEISIA-DLPAVLKLKKELCEANALNASHVTDSLLERLIIGTREFTP 274
           VL +F   +GR P   S A D   +L+++ ++ E   L++  + ++ +        E +P
Sbjct: 247 VLLKFRTDKGRDPQPDSFAEDSQLLLQIRDDVLETMGLSSDLLPNTFVSYCF---SEMSP 303

Query: 275 VCAVVGGILGQEVIKAISCKGEPLKNFFFFDIMDGKGVVEDVSS 318
           VCAVVGG+LGQE++KA+S +  P +NFFFFD + G GVV+  SS
Sbjct: 304 VCAVVGGVLGQEIVKALSQRDAPHRNFFFFDGLKGSGVVDYFSS 347

The heterodimer acts as a E1 ligase for sumo1, sumo2, and sumo3. It mediates ATP-dependent activation of sumo proteins followed by formation of a thioester bond between a sumo protein and a conserved active site cysteine residue on uba2/sae2.

Danio rerio (taxid: 7955)

>sp|Q54WI4|SAE1_DICDI SUMO-activating enzyme subunit 1 OS=Dictyostelium discoideum GN=sae1 PE=3 SV=1

 Score =  184 bits (467), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 111/321 (34%), Positives = 168/321 (52%), Gaps = 17/321 (5%)

Query: 3   GEELTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMD 62
           G+ LTE E  +YDR IR+WG DAQ +L +S +L  G+ G ++E  KN+VLAGV S+TL+D
Sbjct: 16  GKGLTEYEAKIYDRSIRLWGVDAQAKLRQSKVLFIGINGLMSEIIKNVVLAGVDSITLVD 75

Query: 63  DRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEFYD 122
           D ++T    SA+  I  D     GK I+     ++ + NP+V + V   ++ ++D +F  
Sbjct: 76  DHIITTSDLSAHLFINEDS---VGKVISTESVFAISELNPLVTIDVYDKEIETMDDQFIK 132

Query: 123 KFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFVDLQNHKYSKQKIEET 182
            + +VV+S  ++     +N  CRK    V+F         G  F DL   KY  +   E 
Sbjct: 133 NYTMVVISDKNLNNVSKVNSLCRK--NNVSFIFSHSFGLKGLFFSDLNEFKYFTKTTTEP 190

Query: 183 IECQLR---YPSFEEAISVPWRALPRKASKLYFALRVLEQFEEAEGRSPGEISIADLPAV 239
            + +     + SF+E++   W     +    +FAL  L QFEE   R P  IS +DL  +
Sbjct: 191 PKTETHISIFKSFKESMGYDWSKTNSRTPLPFFALSTLYQFEEKHNRVPDNISDSDLSEL 250

Query: 240 LKLKKELCEANALNASHV------TDSLLERLIIGTREFTPVCAVVGGILGQEVIKAISC 293
             +     E   L  +        T  LL ++ I   E +PVCA+VGGI+G E+IK I+ 
Sbjct: 251 KSIINSSIEKFNLKNTDSNKYFEETKDLLNKMNI---EISPVCAIVGGIVGAEIIKIITQ 307

Query: 294 KGEPLKNFFFFDIMDGKGVVE 314
             + L NFFF+D + G G+VE
Sbjct: 308 NMQVLNNFFFYDGVKGTGLVE 328

The dimeric enzyme acts as a E1 ligase for sumo. It mediates ATP-dependent activation of sumo and formation of a thioester with a conserved cysteine residue on sae2.

Dictyostelium discoideum (taxid: 44689)

>sp|Q8JGT5|SAE1_XENLA SUMO-activating enzyme subunit 1 OS=Xenopus laevis GN=sae1 PE=2 SV=1

 Score =  184 bits (466), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 113/340 (33%), Positives = 179/340 (52%), Gaps = 40/340 (11%)

Query: 6   LTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV 65
           ++E+E A YDRQIR+WG +AQ+RL  S +L+ GM+G  AE  KN++LAGV +LTL+D   
Sbjct: 9   ISEEEAAQYDRQIRLWGLEAQKRLRTSRVLLVGMRGLGAEVAKNLILAGVKALTLLDHEQ 68

Query: 66  VTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEFYDKFD 125
           V+ E   A FLIP       G+  AE   +  ++ NPMV V  +  +++    +F+ +FD
Sbjct: 69  VSSEDSRAQFLIPSGSL---GQNRAEASLNRARNLNPMVSVEADTENINQKSDDFFTQFD 125

Query: 126 VVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFVDLQNHKY----------- 174
           VV ++ C       +N  C K    + F+T D     G +F DL  H++           
Sbjct: 126 VVCLTSCPSDLLVRVNHICHK--HNIKFFTGDVYGYHGSMFADLGEHEFVEEKAKVTKAK 183

Query: 175 ---------SKQKIEET----IECQLRYPSFEEAISVPWR-----ALPRKASKLYFALRV 216
                     K KI+ T    ++ ++++   ++A+ + WR     +  +K    YF L+V
Sbjct: 184 PLVEDGPEAKKAKIDPTETILVKKKVQFCPLKDALEIDWRSEKAKSALKKTPTDYFLLQV 243

Query: 217 LEQFEEAEGRSPGEISIADLPAVLKLKKELCEANALNASHVTDSLLERLIIGT--REFTP 274
           L +F   +GR P   S  +   +L    ++C ++ L++  V+  LL +        E  P
Sbjct: 244 LMKFRTDKGRDPQPSSYQEDSELL---LQIC-SDVLDSLGVSPDLLPKDFASYCFSEMAP 299

Query: 275 VCAVVGGILGQEVIKAISCKGEPLKNFFFFDIMDGKGVVE 314
           VCAVVGG+LGQE++KA+S +  P  NFFFFD     G+V+
Sbjct: 300 VCAVVGGVLGQEIVKALSLRDAPHNNFFFFDGKTSNGIVD 339

The heterodimer acts as a E1 ligase for sumo1, sumo2, and sumo3. It mediates ATP-dependent activation of sumo proteins followed by formation of a thioester bond between a sumo protein and a conserved active site cysteine residue on uba2/sae2.

Xenopus laevis (taxid: 8355)

>sp|Q5NVN7|SAE1_PONAB SUMO-activating enzyme subunit 1 OS=Pongo abelii GN=SAE1 PE=2 SV=2

 Score =  181 bits (458), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 113/342 (33%), Positives = 180/342 (52%), Gaps = 38/342 (11%)

Query: 3   GEELTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMD 62
           G  ++E+E A YDRQIR+WG +AQ+RL  S +L+ G+KG  AE  KN++LAGV  LT++D
Sbjct: 8   GGGISEEEAAQYDRQIRLWGLEAQKRLRASRVLLVGLKGLGAEIAKNLILAGVKGLTMLD 67

Query: 63  DRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEFYD 122
              VT E   A FLI        G+  AE   +  ++ NPMV V V+  D+      F+ 
Sbjct: 68  HEQVTPEDPGAQFLI---RTGSVGRNRAEASLERAQNLNPMVDVKVDTEDIEKKPESFFT 124

Query: 123 KFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFVDLQNHKYSKQKIE-- 180
           +FD V ++CCS      +++ C K S  + F+T D     G  F +L  H++ ++K +  
Sbjct: 125 QFDAVCLTCCSRDVIVKVDQICHKNS--IKFFTGDVFGYHGYTFANLGEHEFVEEKTKVA 182

Query: 181 --------------------ET--IECQLRYPSFEEAISVPW-----RALPRKASKLYFA 213
                               ET  ++ ++ +   +EA+ V W     +A  ++ +  YF 
Sbjct: 183 KVSQGVEDGPDTKRAKLDSSETTMVKKKVVFCPVKEALEVDWSSEKAKAALKRTTSDYFL 242

Query: 214 LRVLEQFEEAEGRSPGEISI-ADLPAVLKLKKELCEANALNASHVTDSLLERLIIGTREF 272
           L+VL +F   +GR P   +   D   +L+++ ++ ++  ++   + +  +        E 
Sbjct: 243 LQVLLKFRTDKGRDPSSDTYEEDSELLLQIRNDVLDSLGISPDLLPEDFVRYCF---SEM 299

Query: 273 TPVCAVVGGILGQEVIKAISCKGEPLKNFFFFDIMDGKGVVE 314
            PVCAVVGGIL QE++KA+S +  P  NFFFFD M G G+VE
Sbjct: 300 APVCAVVGGILAQEIVKALSQRDPPHNNFFFFDGMKGNGIVE 341

The heterodimer acts as a E1 ligase for SUMO1, SUMO2, SUMO3, and probably SUMO4. It mediates ATP-dependent activation of SUMO proteins followed by formation of a thioester bond between a SUMO protein and a conserved active site cysteine residue on UBA2/SAE2.

Pongo abelii (taxid: 9601)

>sp|Q9UBE0|SAE1_HUMAN SUMO-activating enzyme subunit 1 OS=Homo sapiens GN=SAE1 PE=1 SV=1

 Score =  181 bits (458), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 113/342 (33%), Positives = 180/342 (52%), Gaps = 38/342 (11%)

Query: 3   GEELTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMD 62
           G  ++E+E A YDRQIR+WG +AQ+RL  S +L+ G+KG  AE  KN++LAGV  LT++D
Sbjct: 8   GGGISEEEAAQYDRQIRLWGLEAQKRLRASRVLLVGLKGLGAEIAKNLILAGVKGLTMLD 67

Query: 63  DRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEFYD 122
              VT E   A FLI        G+  AE   +  ++ NPMV V V+  D+      F+ 
Sbjct: 68  HEQVTPEDPGAQFLI---RTGSVGRNRAEASLERAQNLNPMVDVKVDTEDIEKKPESFFT 124

Query: 123 KFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFVDLQNHKYSKQKIE-- 180
           +FD V ++CCS      +++ C K S  + F+T D     G  F +L  H++ ++K +  
Sbjct: 125 QFDAVCLTCCSRDVIVKVDQICHKNS--IKFFTGDVFGYHGYTFANLGEHEFVEEKTKVA 182

Query: 181 --------------------ET--IECQLRYPSFEEAISVPW-----RALPRKASKLYFA 213
                               ET  ++ ++ +   +EA+ V W     +A  ++ +  YF 
Sbjct: 183 KVSQGVEDGPDTKRAKLDSSETTMVKKKVVFCPVKEALEVDWSSEKAKAALKRTTSDYFL 242

Query: 214 LRVLEQFEEAEGRSPGEISI-ADLPAVLKLKKELCEANALNASHVTDSLLERLIIGTREF 272
           L+VL +F   +GR P   +   D   +L+++ ++ ++  ++   + +  +        E 
Sbjct: 243 LQVLLKFRTDKGRDPSSDTYEEDSELLLQIRNDVLDSLGISPDLLPEDFVRYCF---SEM 299

Query: 273 TPVCAVVGGILGQEVIKAISCKGEPLKNFFFFDIMDGKGVVE 314
            PVCAVVGGIL QE++KA+S +  P  NFFFFD M G G+VE
Sbjct: 300 APVCAVVGGILAQEIVKALSQRDPPHNNFFFFDGMKGNGIVE 341

The heterodimer acts as a E1 ligase for SUMO1, SUMO2, SUMO3, and probably SUMO4. It mediates ATP-dependent activation of SUMO proteins followed by formation of a thioester bond between a SUMO protein and a conserved active site cysteine residue on UBA2/SAE2.

Homo sapiens (taxid: 9606)

>sp|Q6AXQ0|SAE1_RAT SUMO-activating enzyme subunit 1 OS=Rattus norvegicus GN=Sae1 PE=2 SV=1

 Score =  179 bits (453), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 110/334 (32%), Positives = 175/334 (52%), Gaps = 38/334 (11%)

Query: 11  TALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEA 70
            A YDRQIR+WG +AQ+RL  S +L+ GMKG  AE  KN++LAGV  LT++D   V+ E 
Sbjct: 19  AAQYDRQIRLWGLEAQKRLRASRVLIVGMKGLGAEIAKNLILAGVKGLTMLDHEQVSPED 78

Query: 71  WSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEFYDKFDVVVVS 130
             A FLI        G+  AE   +  ++ NPMV V V+  D+      F+ +FD V ++
Sbjct: 79  LGAQFLI---RTGSVGQNRAEASLERAQNLNPMVDVKVDTEDIEKKPESFFTEFDAVCLT 135

Query: 131 CCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFVDLQNHKYSKQKIEET-------- 182
           CCS      +++ C + S  + F+T D     G  F +L  H++ ++K + T        
Sbjct: 136 CCSKDVIIKVDQICHRNS--IKFFTGDVFGYHGYTFANLGEHEFVEEKTKVTKVSQGVED 193

Query: 183 ----------------IECQLRYPSFEEAISVPW-----RALPRKASKLYFALRVLEQFE 221
                           ++ ++ +   +EA++V W     +A  ++ +  YF L+VL +F 
Sbjct: 194 GPDAKRAKLDSSETTMVKKKVLFCPVKEALAVDWSGEKAQAALKRTAPDYFLLQVLLKFR 253

Query: 222 EAEGRSPGEISIA-DLPAVLKLKKELCEANALNASHVTDSLLERLIIGTREFTPVCAVVG 280
             +GR P   S + D   +L+++ ++ ++  ++   + D  +        E  PVCAVVG
Sbjct: 254 TDKGRDPTSDSYSEDAELLLQIRNDVFDSLGVSPDLLPDDFVRYCF---SEMAPVCAVVG 310

Query: 281 GILGQEVIKAISCKGEPLKNFFFFDIMDGKGVVE 314
           GIL QE++KA+S +  P  NFFFFD M G G+VE
Sbjct: 311 GILAQEIVKALSQRDPPHNNFFFFDGMKGSGIVE 344

The heterodimer acts as a E1 ligase for SUMO1, SUMO2, SUMO3, and probably SUMO4. It mediates ATP-dependent activation of SUMO proteins followed by formation of a thioester bond between a SUMO protein and a conserved active site cysteine residue on UBA2/SAE2.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	324
225456343	323	PREDICTED: SUMO-activating enzyme subuni	0.996	1.0	0.795	1e-154
255540183	321	DNA damage tolerance protein rad31, puta	0.975	0.984	0.791	1e-149
224119708	323	predicted protein [Populus trichocarpa]	0.996	1.0	0.777	1e-149
224134006	323	predicted protein [Populus trichocarpa]	0.984	0.987	0.777	1e-147
449454812	321	PREDICTED: SUMO-activating enzyme subuni	0.981	0.990	0.752	1e-144
363814410	321	uncharacterized protein LOC100807922 [Gl	0.981	0.990	0.764	1e-143
356527937	321	PREDICTED: LOW QUALITY PROTEIN: SUMO-act	0.981	0.990	0.764	1e-143
297792369	320	sumo activating enzyme 1b [Arabidopsis l	0.981	0.993	0.723	1e-139
18416454	322	SUMO-activating enzyme subunit 1A [Arabi	0.978	0.984	0.735	1e-139
297803630	322	sumo-activating enzyme 1A [Arabidopsis l	0.981	0.987	0.726	1e-138

>gi|225456343|ref|XP_002283880.1| PREDICTED: SUMO-activating enzyme subunit 1B [Vitis vinifera] gi|297734431|emb|CBI15678.3| unnamed protein product [Vitis vinifera]

 Score =  550 bits (1417), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 257/323 (79%), Positives = 293/323 (90%)

Query: 1   MDGEELTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTL 60
           MDGEELTEQETALYDRQIRVWG DAQRRLSK+HILV GMKGTV EFCKNIVLAGVGSLTL
Sbjct: 1   MDGEELTEQETALYDRQIRVWGVDAQRRLSKAHILVSGMKGTVVEFCKNIVLAGVGSLTL 60

Query: 61  MDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEF 120
           +D R VTEEA SANFLIPPDENVY GKT+AE+CCDSLKDFNPMVRVSVEKGD+SS  G+F
Sbjct: 61  VDSREVTEEALSANFLIPPDENVYSGKTLAELCCDSLKDFNPMVRVSVEKGDISSFGGDF 120

Query: 121 YDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFVDLQNHKYSKQKIE 180
           YD+FDVVV+S CS  TKKLINEKCRK+SKR+AFYTVDCRDSCGEI+VDLQN+ YSK+K++
Sbjct: 121 YDRFDVVVISSCSFATKKLINEKCRKVSKRIAFYTVDCRDSCGEIYVDLQNYTYSKKKLD 180

Query: 181 ETIECQLRYPSFEEAISVPWRALPRKASKLYFALRVLEQFEEAEGRSPGEISIADLPAVL 240
           ET ECQL+YPSFEEA+++PWRALP+K +KLY A+RV+E+FEEAEGR+PGEISIADLP VL
Sbjct: 181 ETDECQLQYPSFEEAVTIPWRALPKKVTKLYLAMRVIERFEEAEGRNPGEISIADLPGVL 240

Query: 241 KLKKELCEANALNASHVTDSLLERLIIGTREFTPVCAVVGGILGQEVIKAISCKGEPLKN 300
           KLKKELCEA + N SHV D+LLERL+  T EF PVCA++GGILGQEVIKAIS KG+PLKN
Sbjct: 241 KLKKELCEAQSFNESHVPDALLERLVSDTSEFPPVCAILGGILGQEVIKAISGKGDPLKN 300

Query: 301 FFFFDIMDGKGVVEDVSSPKKES 323
           FFFFD +DGKG++ED+S+P   S
Sbjct: 301 FFFFDAIDGKGIIEDISNPNPGS 323

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255540183|ref|XP_002511156.1| DNA damage tolerance protein rad31, putative [Ricinus communis] gi|223550271|gb|EEF51758.1| DNA damage tolerance protein rad31, putative [Ricinus communis]

 Score =  535 bits (1378), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 250/316 (79%), Positives = 288/316 (91%)

Query: 1   MDGEELTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTL 60
           MDGEELTEQETALYDRQIRVWGADAQRRL+KSHILV GMKGTVAEFCKNIVLAGVGSLTL
Sbjct: 1   MDGEELTEQETALYDRQIRVWGADAQRRLTKSHILVYGMKGTVAEFCKNIVLAGVGSLTL 60

Query: 61  MDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEF 120
           +DDR VTE+A SANFLIPPDEN   GKTIAE+CCDSLK+FNPMVRVSVE+GDLS    +F
Sbjct: 61  VDDRAVTEDALSANFLIPPDENGCAGKTIAELCCDSLKEFNPMVRVSVERGDLSGFSEDF 120

Query: 121 YDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFVDLQNHKYSKQKIE 180
           +DKFDVVVVSCC++ TKKLINEKCRKL+KRVAFYTVDCRDSCGEIFVDLQ + Y+K+K++
Sbjct: 121 FDKFDVVVVSCCTLATKKLINEKCRKLAKRVAFYTVDCRDSCGEIFVDLQKYLYAKKKVD 180

Query: 181 ETIECQLRYPSFEEAISVPWRALPRKASKLYFALRVLEQFEEAEGRSPGEISIADLPAVL 240
           ET EC+L+YPSF+E+ISVPW+ LPRK SKLYF++RV+E+FEEAEGR PGEI I DLPAVL
Sbjct: 181 ETTECELQYPSFQESISVPWKTLPRKVSKLYFSMRVIERFEEAEGRKPGEIYIKDLPAVL 240

Query: 241 KLKKELCEANALNASHVTDSLLERLIIGTREFTPVCAVVGGILGQEVIKAISCKGEPLKN 300
            LKKELCEA +L+ SH+ ++LLERL++G REF PVCA++GGILGQEVIK IS KG+PLKN
Sbjct: 241 SLKKELCEAQSLSESHIPNALLERLVMGGREFPPVCAIIGGILGQEVIKVISGKGDPLKN 300

Query: 301 FFFFDIMDGKGVVEDV 316
           FFFFD MDGKG++ED+
Sbjct: 301 FFFFDAMDGKGIIEDI 316

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224119708|ref|XP_002318142.1| predicted protein [Populus trichocarpa] gi|222858815|gb|EEE96362.1| predicted protein [Populus trichocarpa]

 Score =  534 bits (1376), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 251/323 (77%), Positives = 290/323 (89%)

Query: 1   MDGEELTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTL 60
           M+GEELTEQETALYDRQIRVWGADAQRRLSKSHILV GMKG +AEFCKNIVLAGVGSLTL
Sbjct: 1   MNGEELTEQETALYDRQIRVWGADAQRRLSKSHILVYGMKGIIAEFCKNIVLAGVGSLTL 60

Query: 61  MDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEF 120
           +DDR V+EEA SANFLIPPDE+V  GKT+AE+CCDSL++FNPMVRVSVEKGDL+SL  EF
Sbjct: 61  VDDRAVSEEALSANFLIPPDESVCIGKTLAELCCDSLREFNPMVRVSVEKGDLASLGAEF 120

Query: 121 YDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFVDLQNHKYSKQKIE 180
           +DKFDVVV+SCCS+ TKKLINEKCRKLSKRV+FY VDCRD CGEIFVDLQ + Y+K+K +
Sbjct: 121 FDKFDVVVISCCSLATKKLINEKCRKLSKRVSFYAVDCRDCCGEIFVDLQKYNYAKKKTD 180

Query: 181 ETIECQLRYPSFEEAISVPWRALPRKASKLYFALRVLEQFEEAEGRSPGEISIADLPAVL 240
              EC+L+YPSF+EAISVPWR+LPRK SKLYFA+RV+E+FEEAEGR PGEI I DLPAVL
Sbjct: 181 GATECELQYPSFQEAISVPWRSLPRKVSKLYFAMRVIERFEEAEGRKPGEICIEDLPAVL 240

Query: 241 KLKKELCEANALNASHVTDSLLERLIIGTREFTPVCAVVGGILGQEVIKAISCKGEPLKN 300
           KLKKELCEA ++N SHV D+LLERL++G +EF PVCA++GG LGQEVIKAIS KG+P+KN
Sbjct: 241 KLKKELCEAQSVNESHVPDTLLERLVMGAKEFPPVCAIIGGTLGQEVIKAISSKGDPVKN 300

Query: 301 FFFFDIMDGKGVVEDVSSPKKES 323
           FF FD  DGKG++ED+S+P  ES
Sbjct: 301 FFIFDATDGKGMIEDISNPNLES 323

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224134006|ref|XP_002321713.1| predicted protein [Populus trichocarpa] gi|222868709|gb|EEF05840.1| predicted protein [Populus trichocarpa]

 Score =  527 bits (1357), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 248/319 (77%), Positives = 286/319 (89%)

Query: 1   MDGEELTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTL 60
           MDGEELTEQETALYDRQIRVWGADAQRRLSKSHILV GMKGT+ EFCKNIVLAGVGSLTL
Sbjct: 1   MDGEELTEQETALYDRQIRVWGADAQRRLSKSHILVYGMKGTITEFCKNIVLAGVGSLTL 60

Query: 61  MDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEF 120
           +DDR VTEEA SANFL+PPDEN   GKT+AE+C DSL +FNPMVRVSVEKGDL+S   EF
Sbjct: 61  VDDRAVTEEALSANFLMPPDENACSGKTLAELCRDSLNEFNPMVRVSVEKGDLASFGVEF 120

Query: 121 YDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFVDLQNHKYSKQKIE 180
           +DKFDVVV+S CS+ TKKLINE+CRKLSKRV+FYTVDCRD CGEIFVDLQ + Y+K++++
Sbjct: 121 FDKFDVVVISFCSLATKKLINERCRKLSKRVSFYTVDCRDCCGEIFVDLQKYNYAKKRLD 180

Query: 181 ETIECQLRYPSFEEAISVPWRALPRKASKLYFALRVLEQFEEAEGRSPGEISIADLPAVL 240
            T EC+L+YPSF+EAISVPWR+LPRK SKLY A+RV+E+FEE EGR PGEI I DLPAVL
Sbjct: 181 GTTECELQYPSFQEAISVPWRSLPRKVSKLYLAMRVIERFEEDEGRKPGEICIEDLPAVL 240

Query: 241 KLKKELCEANALNASHVTDSLLERLIIGTREFTPVCAVVGGILGQEVIKAISCKGEPLKN 300
           KLKKELCEA +LN SH+ ++LLERL++G REF PVCA++GGILGQEVIKAIS KG+PLKN
Sbjct: 241 KLKKELCEAQSLNESHIPNALLERLVMGAREFPPVCAIIGGILGQEVIKAISGKGDPLKN 300

Query: 301 FFFFDIMDGKGVVEDVSSP 319
           FFFFD +DGKG++ED+S P
Sbjct: 301 FFFFDSVDGKGIIEDISDP 319

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449454812|ref|XP_004145148.1| PREDICTED: SUMO-activating enzyme subunit 1A-like [Cucumis sativus] gi|449470758|ref|XP_004153083.1| PREDICTED: SUMO-activating enzyme subunit 1A-like [Cucumis sativus] gi|449526648|ref|XP_004170325.1| PREDICTED: SUMO-activating enzyme subunit 1A-like [Cucumis sativus]

 Score =  517 bits (1332), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 240/319 (75%), Positives = 286/319 (89%), Gaps = 1/319 (0%)

Query: 1   MDGEELTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTL 60
           MDGEELTEQET LYDRQIRVWGADAQRRLSK+HILVCGMKG VAEFCKNIVLAG+GSLTL
Sbjct: 1   MDGEELTEQETQLYDRQIRVWGADAQRRLSKAHILVCGMKGAVAEFCKNIVLAGIGSLTL 60

Query: 61  MDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEF 120
           +D+R+VTEEA SANFLIPPDE+V+GGK++AE+CCDSLKDFNPMVRVSV KG+ SS D EF
Sbjct: 61  VDNRLVTEEALSANFLIPPDESVFGGKSVAELCCDSLKDFNPMVRVSVIKGEPSSFDEEF 120

Query: 121 YDKFDVVVVSCCSVTTK-KLINEKCRKLSKRVAFYTVDCRDSCGEIFVDLQNHKYSKQKI 179
              FDV+VVSCCS+  K K +NEKCRKL KRV+FYTVDCRDSCGEIFVDLQ++KY+K+K+
Sbjct: 121 LKTFDVIVVSCCSLAEKVKSVNEKCRKLPKRVSFYTVDCRDSCGEIFVDLQDYKYAKKKL 180

Query: 180 EETIECQLRYPSFEEAISVPWRALPRKASKLYFALRVLEQFEEAEGRSPGEISIADLPAV 239
           E+T+ECQL YPSFE+AISVPW+  PRK SKL++ALRV+E+FEEAEGRSPGE S++DLP V
Sbjct: 181 EDTVECQLSYPSFEDAISVPWKVHPRKVSKLFYALRVIERFEEAEGRSPGETSVSDLPGV 240

Query: 240 LKLKKELCEANALNASHVTDSLLERLIIGTREFTPVCAVVGGILGQEVIKAISCKGEPLK 299
           LKLKKE+CE+  LN +H+ ++L+ERL+    EF PVCA++GGILGQEVIKA+S KG+PLK
Sbjct: 241 LKLKKEICESQLLNEAHIPNALVERLVTNPTEFPPVCAIIGGILGQEVIKAVSGKGDPLK 300

Query: 300 NFFFFDIMDGKGVVEDVSS 318
           NFF+FD +DGKG +ED+SS
Sbjct: 301 NFFYFDAVDGKGTIEDISS 319

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363814410|ref|NP_001242842.1| uncharacterized protein LOC100807922 [Glycine max] gi|255640239|gb|ACU20410.1| unknown [Glycine max]

 Score =  513 bits (1321), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 244/319 (76%), Positives = 279/319 (87%), Gaps = 1/319 (0%)

Query: 2   DGEELTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLM 61
           DGEELT +ETALYDRQIRVWGADAQRRLSKSH+LV GMKGTVAEFCKNIVLAGVGSLTL+
Sbjct: 4   DGEELTARETALYDRQIRVWGADAQRRLSKSHVLVYGMKGTVAEFCKNIVLAGVGSLTLV 63

Query: 62  DDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEFY 121
           DDR  TEE  S+NFLIPPDENVY GKT+A +CC+SLKDFNPMV VSVEKGDLSS D EF 
Sbjct: 64  DDRAATEEMLSSNFLIPPDENVYSGKTLAGLCCNSLKDFNPMVHVSVEKGDLSSFDVEFL 123

Query: 122 DKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFVDLQNHKYSKQKIEE 181
            KFDVVVVSCC+++ KKL N KCRKLSKRVAFY VDCRDSCGEIFVDLQ++KYSK+K +E
Sbjct: 124 SKFDVVVVSCCTLSAKKLANGKCRKLSKRVAFYAVDCRDSCGEIFVDLQDYKYSKKKQDE 183

Query: 182 TIECQLRYPSFEEAISVPWRALPRKASKLYFALRVLEQFEEAEGRSPGEISIADLPAVLK 241
           T+EC L+YPSFE+A+SVPWRAL R+ SKLY+A+RV+E+FEEAEGRS GE+SIAD   +LK
Sbjct: 184 TVECDLKYPSFEDALSVPWRALHRRMSKLYYAMRVIEKFEEAEGRSTGEVSIADFSGLLK 243

Query: 242 LKKELCEANALNASHVTDSLLERLIIGTREFTPVCAVVGGILGQEVIKAISCKGEPLKNF 301
           LKKE+C   +LN S V DSLL+RL+    EF PVCA++GGILGQEVIKAIS KG+PLKNF
Sbjct: 244 LKKEICTTQSLNESQVPDSLLKRLVTNATEFPPVCAIIGGILGQEVIKAISGKGDPLKNF 303

Query: 302 FFFDIMDGKGVVEDVSSPK 320
           FFFD  DGKG++ED+ SPK
Sbjct: 304 FFFDAFDGKGIIEDI-SPK 321

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356527937|ref|XP_003532562.1| PREDICTED: LOW QUALITY PROTEIN: SUMO-activating enzyme subunit 1B-like [Glycine max]

 Score =  513 bits (1321), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 244/319 (76%), Positives = 280/319 (87%), Gaps = 1/319 (0%)

Query: 2   DGEELTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLM 61
           DGEELT  ETALYDRQIRV GAD  R LSKSH+LV GMKGTVAEFCKNIVLAGVGSLTL+
Sbjct: 4   DGEELTAHETALYDRQIRVRGADDHRXLSKSHVLVYGMKGTVAEFCKNIVLAGVGSLTLV 63

Query: 62  DDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEFY 121
           DDRV TEE  S+NFLIPPDEN Y GKT+ E+CC+SLKDFNPMVRVS+EKGDLSS D EF+
Sbjct: 64  DDRVATEEVLSSNFLIPPDENAYSGKTLGELCCNSLKDFNPMVRVSIEKGDLSSFDVEFF 123

Query: 122 DKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFVDLQNHKYSKQKIEE 181
            KFDVVVVSCCS++ KKL N+KCRKLSKRVAFY VDCRDSCGEIFVDLQ++KYSK+K +E
Sbjct: 124 SKFDVVVVSCCSLSAKKLANDKCRKLSKRVAFYAVDCRDSCGEIFVDLQDYKYSKKKQDE 183

Query: 182 TIECQLRYPSFEEAISVPWRALPRKASKLYFALRVLEQFEEAEGRSPGEISIADLPAVLK 241
           T++C L+YPSFE+A+SVPWRAL R+ SKLY+A+RV+E+FEEAEGRS GE+SIADL  VLK
Sbjct: 184 TVKCDLKYPSFEDALSVPWRALHRRMSKLYYAMRVIEKFEEAEGRSAGEVSIADLSGVLK 243

Query: 242 LKKELCEANALNASHVTDSLLERLIIGTREFTPVCAVVGGILGQEVIKAISCKGEPLKNF 301
           LKKE+C A +LN SHV D+LLERL+    EF PVCA++GGILGQEVIKAIS KG+PLKNF
Sbjct: 244 LKKEICTAQSLNESHVPDTLLERLVTNAIEFPPVCAIIGGILGQEVIKAISGKGDPLKNF 303

Query: 302 FFFDIMDGKGVVEDVSSPK 320
           FFFD  DGKG++ED+ SPK
Sbjct: 304 FFFDAFDGKGIIEDL-SPK 321

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297792369|ref|XP_002864069.1| sumo activating enzyme 1b [Arabidopsis lyrata subsp. lyrata] gi|297309904|gb|EFH40328.1| sumo activating enzyme 1b [Arabidopsis lyrata subsp. lyrata]

 Score =  501 bits (1289), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 230/318 (72%), Positives = 278/318 (87%)

Query: 1   MDGEELTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTL 60
           MDGEELTEQETALYDRQIRVWGA AQRRLSKSH+LV G+KGTVAEFCKNIVLAGVGS+TL
Sbjct: 1   MDGEELTEQETALYDRQIRVWGAGAQRRLSKSHVLVSGIKGTVAEFCKNIVLAGVGSVTL 60

Query: 61  MDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEF 120
           +DDR+VT EA++ANFLI PDEN Y GKT+AE+CCDSLK+FNPMV VS+EKGDLS+   +F
Sbjct: 61  LDDRLVTTEAFNANFLILPDENAYVGKTVAEICCDSLKEFNPMVHVSIEKGDLSTFGVDF 120

Query: 121 YDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFVDLQNHKYSKQKIE 180
           ++KFDVVV+   S  TKK +NEKCR L+KRVAFYTVDCR SCGEIF+DL+N+KY+K+K++
Sbjct: 121 FEKFDVVVIGYSSRATKKAVNEKCRNLAKRVAFYTVDCRGSCGEIFIDLKNYKYTKKKLD 180

Query: 181 ETIECQLRYPSFEEAISVPWRALPRKASKLYFALRVLEQFEEAEGRSPGEISIADLPAVL 240
           ET+EC+L +PSFEEA+S PW+ +PR+ +KLYFA+RV+E FEE EGR PGE S++DLP VL
Sbjct: 181 ETVECELMFPSFEEAVSAPWKPIPRRTAKLYFAMRVIELFEETEGRKPGECSLSDLPRVL 240

Query: 241 KLKKELCEANALNASHVTDSLLERLIIGTREFTPVCAVVGGILGQEVIKAISCKGEPLKN 300
           KLKKELCE N+++  H+ DSLLERL+ G  EF P CA++GGILGQEVIK IS KGEPLKN
Sbjct: 241 KLKKELCEGNSVSEKHIPDSLLERLVSGNTEFPPACAIIGGILGQEVIKVISGKGEPLKN 300

Query: 301 FFFFDIMDGKGVVEDVSS 318
           FF+FD  DGKGV+ED+S+
Sbjct: 301 FFYFDAEDGKGVIEDLSN 318

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18416454|ref|NP_567712.1| SUMO-activating enzyme subunit 1A [Arabidopsis thaliana] gi|75248475|sp|Q8VY78.1|SAE1A_ARATH RecName: Full=SUMO-activating enzyme subunit 1A; AltName: Full=SUMO-activating enzyme subunit 1-1; AltName: Full=Ubiquitin-like 1-activating enzyme E1A gi|18252881|gb|AAL62367.1| ubiquitin activating enzyme - like protein [Arabidopsis thaliana] gi|21554607|gb|AAM63631.1| ubiquitin activating enzyme-like protein [Arabidopsis thaliana] gi|22652850|gb|AAN03849.1| SUMO activating enzyme 1a [Arabidopsis thaliana] gi|23197772|gb|AAN15413.1| ubiquitin activating enzyme - like protein [Arabidopsis thaliana] gi|332659578|gb|AEE84978.1| SUMO-activating enzyme subunit 1A [Arabidopsis thaliana]

 Score =  500 bits (1287), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 233/317 (73%), Positives = 279/317 (88%)

Query: 1   MDGEELTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTL 60
           MDGEELTEQETALYDRQIRVWGA+AQRRL+K+HILV G+KGTVAEFCKNIVLAGVGS+TL
Sbjct: 1   MDGEELTEQETALYDRQIRVWGANAQRRLTKAHILVSGIKGTVAEFCKNIVLAGVGSVTL 60

Query: 61  MDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEF 120
           MDDR+   EA +ANFLIPPDENVY GKT+AE+C DSLKDFNPMVRVSVEKGDLS L  +F
Sbjct: 61  MDDRLANMEALNANFLIPPDENVYSGKTVAEICSDSLKDFNPMVRVSVEKGDLSMLGTDF 120

Query: 121 YDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFVDLQNHKYSKQKIE 180
           +++FDVVV+   S  TKK +NEKCRKL KRVAFYTVDCRDSCGEIFVDLQ++KY+K+K+E
Sbjct: 121 FEQFDVVVIGYGSRATKKYVNEKCRKLKKRVAFYTVDCRDSCGEIFVDLQDYKYTKKKLE 180

Query: 181 ETIECQLRYPSFEEAISVPWRALPRKASKLYFALRVLEQFEEAEGRSPGEISIADLPAVL 240
           E +EC+L +PSF+EAISVPW+ +PR+ +KLYFA+RV+E FEE+EGR  GE S+ DL  VL
Sbjct: 181 EMVECELNFPSFQEAISVPWKPIPRRTAKLYFAMRVIEVFEESEGRKHGECSLLDLARVL 240

Query: 241 KLKKELCEANALNASHVTDSLLERLIIGTREFTPVCAVVGGILGQEVIKAISCKGEPLKN 300
           ++KK+LCEAN+++ SH+ D LLERLI GT EF PVCA+VGGIL QEVIKA+S KG+PLKN
Sbjct: 241 EIKKQLCEANSVSESHIPDILLERLITGTTEFPPVCAIVGGILAQEVIKAVSGKGDPLKN 300

Query: 301 FFFFDIMDGKGVVEDVS 317
           FF++D  DGKGV+ED+S
Sbjct: 301 FFYYDGEDGKGVMEDIS 317

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297803630|ref|XP_002869699.1| sumo-activating enzyme 1A [Arabidopsis lyrata subsp. lyrata] gi|297315535|gb|EFH45958.1| sumo-activating enzyme 1A [Arabidopsis lyrata subsp. lyrata]

 Score =  498 bits (1283), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 231/318 (72%), Positives = 280/318 (88%)

Query: 1   MDGEELTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTL 60
           MDGEELTEQETALYDRQIRVWGA+AQRRL+K+HI V G+KGTVAEFCKNIVLAGVGS+TL
Sbjct: 1   MDGEELTEQETALYDRQIRVWGANAQRRLTKAHIFVSGIKGTVAEFCKNIVLAGVGSVTL 60

Query: 61  MDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEF 120
           MD R+V EEA +ANFLIPPD+N Y GKT+AE+CC+SLKDFNPMVRVSVEKGDLS+L  +F
Sbjct: 61  MDGRLVNEEALNANFLIPPDQNAYSGKTVAEICCESLKDFNPMVRVSVEKGDLSTLGTDF 120

Query: 121 YDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFVDLQNHKYSKQKIE 180
           +++FDVVV+   S  TKK +NEKCRKL KRVAFYTVDCRDSCGEIFVDLQ++KY K+K+E
Sbjct: 121 FEQFDVVVIGYGSPATKKYVNEKCRKLVKRVAFYTVDCRDSCGEIFVDLQDYKYMKKKLE 180

Query: 181 ETIECQLRYPSFEEAISVPWRALPRKASKLYFALRVLEQFEEAEGRSPGEISIADLPAVL 240
           ET+EC+L +PSF+EAISVPW+ +PR+ +KLYFA+RV+E FEE+EGR  GE S+ DL  VL
Sbjct: 181 ETVECELNFPSFQEAISVPWKPIPRRTAKLYFAMRVIEVFEESEGRKHGECSLLDLARVL 240

Query: 241 KLKKELCEANALNASHVTDSLLERLIIGTREFTPVCAVVGGILGQEVIKAISCKGEPLKN 300
           ++KK+LCEAN+++ SH+ DSLL RLI GT EF P CA+VGGIL QEVIKA+S KG+PLKN
Sbjct: 241 EIKKQLCEANSVSESHIPDSLLGRLITGTTEFPPACAIVGGILAQEVIKAVSGKGDPLKN 300

Query: 301 FFFFDIMDGKGVVEDVSS 318
           FF++D  DGKGV+ED+S+
Sbjct: 301 FFYYDGEDGKGVMEDISN 318

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	324
TAIR|locus:2159727	320	SAE1B "SUMO-activating enzyme	0.978	0.990	0.703	8.9e-125
TAIR|locus:2832477	320	SAE1B "SUMO activating enzyme	0.978	0.990	0.703	8.9e-125
TAIR|locus:2117283	322	SAE1A "SUMO-activating enzyme	0.978	0.984	0.712	2.4e-124
ZFIN|ZDB-GENE-040625-21	348	sae1 "SUMO1 activating enzyme	0.518	0.482	0.362	5.3e-45
UNIPROTKB|Q8JGT5	344	sae1 "SUMO-activating enzyme s	0.530	0.5	0.355	7.6e-44
RGD|1306098	349	Sae1 "SUMO1 activating enzyme	0.540	0.501	0.355	2.5e-43
MGI|MGI:1929264	350	Sae1 "SUMO1 activating enzyme	0.527	0.488	0.363	3.2e-43
UNIPROTKB|F1RM03	346	SAE1 "Uncharacterized protein"	0.527	0.494	0.357	3.2e-43
UNIPROTKB|A2VE14	346	SAE1 "SUMO-activating enzyme s	0.527	0.494	0.357	3.2e-43
UNIPROTKB|E2RSL5	346	SAE1 "Uncharacterized protein"	0.527	0.494	0.352	6.7e-43

TAIR|locus:2159727 SAE1B "SUMO-activating enzyme 1B" [Arabidopsis thaliana (taxid:3702)]

 Score = 1226 (436.6 bits), Expect = 8.9e-125, P = 8.9e-125
 Identities = 223/317 (70%), Positives = 268/317 (84%)

Query:     1 MDGEELTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTL 60
             MDG+ELTEQETALYDRQIRVWGA AQRRLSKSH+LV G+KGTVAEFCKNIVLAGVGS+TL
Sbjct:     1 MDGDELTEQETALYDRQIRVWGAGAQRRLSKSHVLVSGIKGTVAEFCKNIVLAGVGSVTL 60

Query:    61 MDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEF 120
             +DDR+VT E ++ANFLI PDEN Y GKT+AE+CCDSLKDFNPMV VS+EKGDLS+L  +F
Sbjct:    61 LDDRLVTTEVFNANFLILPDENAYVGKTVAEICCDSLKDFNPMVHVSIEKGDLSTLGVDF 120

Query:   121 YDKFDXXXXXXXXXXXXXLINEKCRKLSKRVAFYTVDCRDSCGEIFVDLQNHKYSKQKIE 180
             ++KFD              +NEKCR L+K VAFYTVDCR SCGEIFVDLQN+KY+K+K++
Sbjct:   121 FEKFDVVVIGYSSRATKKAVNEKCRNLAKDVAFYTVDCRGSCGEIFVDLQNYKYTKKKLD 180

Query:   181 ETIECQLRYPSFEEAISVPWRALPRKASKLYFALRVLEQFEEAEGRSPGEISIADLPAVL 240
             ET+EC+L +PSFEEA+SVPW+ +PR+ +KLYFA+RV+E FEE EGR PGE S++DLP VL
Sbjct:   181 ETVECELTFPSFEEAVSVPWKPMPRRTAKLYFAMRVIELFEETEGRKPGECSLSDLPRVL 240

Query:   241 KLKKELCEANALNASHVTDSLLERLIIGTREFTPVCAVVGGILGQEVIKAISCKGEPLKN 300
             KLKKELCE N+++ +H+ D LLERL+    EF P CA++GGILGQEVIK IS KGEPLKN
Sbjct:   241 KLKKELCEGNSVSENHIPDILLERLVSNNTEFPPACAIIGGILGQEVIKVISGKGEPLKN 300

Query:   301 FFFFDIMDGKGVVEDVS 317
             FF+FD  DGKGV+ED+S
Sbjct:   301 FFYFDAEDGKGVIEDLS 317

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006464 "cellular protein modification process" evidence=IEA

GO:0019948 "SUMO activating enzyme activity" evidence=ISS;IDA

GO:0016925 "protein sumoylation" evidence=ISS;IDA

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2832477 SAE1B "SUMO activating enzyme 1B" [Arabidopsis thaliana (taxid:3702)]

 Score = 1226 (436.6 bits), Expect = 8.9e-125, P = 8.9e-125
 Identities = 223/317 (70%), Positives = 268/317 (84%)

Query:     1 MDGEELTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTL 60
             MDG+ELTEQETALYDRQIRVWGA AQRRLSKSH+LV G+KGTVAEFCKNIVLAGVGS+TL
Sbjct:     1 MDGDELTEQETALYDRQIRVWGAGAQRRLSKSHVLVSGIKGTVAEFCKNIVLAGVGSVTL 60

Query:    61 MDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEF 120
             +DDR+VT E ++ANFLI PDEN Y GKT+AE+CCDSLKDFNPMV VS+EKGDLS+L  +F
Sbjct:    61 LDDRLVTTEVFNANFLILPDENAYVGKTVAEICCDSLKDFNPMVHVSIEKGDLSTLGVDF 120

Query:   121 YDKFDXXXXXXXXXXXXXLINEKCRKLSKRVAFYTVDCRDSCGEIFVDLQNHKYSKQKIE 180
             ++KFD              +NEKCR L+K VAFYTVDCR SCGEIFVDLQN+KY+K+K++
Sbjct:   121 FEKFDVVVIGYSSRATKKAVNEKCRNLAKDVAFYTVDCRGSCGEIFVDLQNYKYTKKKLD 180

Query:   181 ETIECQLRYPSFEEAISVPWRALPRKASKLYFALRVLEQFEEAEGRSPGEISIADLPAVL 240
             ET+EC+L +PSFEEA+SVPW+ +PR+ +KLYFA+RV+E FEE EGR PGE S++DLP VL
Sbjct:   181 ETVECELTFPSFEEAVSVPWKPMPRRTAKLYFAMRVIELFEETEGRKPGECSLSDLPRVL 240

Query:   241 KLKKELCEANALNASHVTDSLLERLIIGTREFTPVCAVVGGILGQEVIKAISCKGEPLKN 300
             KLKKELCE N+++ +H+ D LLERL+    EF P CA++GGILGQEVIK IS KGEPLKN
Sbjct:   241 KLKKELCEGNSVSENHIPDILLERLVSNNTEFPPACAIIGGILGQEVIKVISGKGEPLKN 300

Query:   301 FFFFDIMDGKGVVEDVS 317
             FF+FD  DGKGV+ED+S
Sbjct:   301 FFYFDAEDGKGVIEDLS 317

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006464 "cellular protein modification process" evidence=IEA

GO:0019948 "SUMO activating enzyme activity" evidence=ISS;IDA

GO:0016925 "protein sumoylation" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2117283 SAE1A "SUMO-activating enzyme 1A" [Arabidopsis thaliana (taxid:3702)]

 Score = 1222 (435.2 bits), Expect = 2.4e-124, P = 2.4e-124
 Identities = 226/317 (71%), Positives = 271/317 (85%)

Query:     1 MDGEELTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTL 60
             MDGEELTEQETALYDRQIRVWGA+AQRRL+K+HILV G+KGTVAEFCKNIVLAGVGS+TL
Sbjct:     1 MDGEELTEQETALYDRQIRVWGANAQRRLTKAHILVSGIKGTVAEFCKNIVLAGVGSVTL 60

Query:    61 MDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEF 120
             MDDR+   EA +ANFLIPPDENVY GKT+AE+C DSLKDFNPMVRVSVEKGDLS L  +F
Sbjct:    61 MDDRLANMEALNANFLIPPDENVYSGKTVAEICSDSLKDFNPMVRVSVEKGDLSMLGTDF 120

Query:   121 YDKFDXXXXXXXXXXXXXLINEKCRKLSKRVAFYTVDCRDSCGEIFVDLQNHKYSKQKIE 180
             +++FD              +NEKCRKL KRVAFYTVDCRDSCGEIFVDLQ++KY+K+K+E
Sbjct:   121 FEQFDVVVIGYGSRATKKYVNEKCRKLKKRVAFYTVDCRDSCGEIFVDLQDYKYTKKKLE 180

Query:   181 ETIECQLRYPSFEEAISVPWRALPRKASKLYFALRVLEQFEEAEGRSPGEISIADLPAVL 240
             E +EC+L +PSF+EAISVPW+ +PR+ +KLYFA+RV+E FEE+EGR  GE S+ DL  VL
Sbjct:   181 EMVECELNFPSFQEAISVPWKPIPRRTAKLYFAMRVIEVFEESEGRKHGECSLLDLARVL 240

Query:   241 KLKKELCEANALNASHVTDSLLERLIIGTREFTPVCAVVGGILGQEVIKAISCKGEPLKN 300
             ++KK+LCEAN+++ SH+ D LLERLI GT EF PVCA+VGGIL QEVIKA+S KG+PLKN
Sbjct:   241 EIKKQLCEANSVSESHIPDILLERLITGTTEFPPVCAIVGGILAQEVIKAVSGKGDPLKN 300

Query:   301 FFFFDIMDGKGVVEDVS 317
             FF++D  DGKGV+ED+S
Sbjct:   301 FFYYDGEDGKGVMEDIS 317

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0019948 "SUMO activating enzyme activity" evidence=ISS;IDA

GO:0016925 "protein sumoylation" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

ZFIN|ZDB-GENE-040625-21 sae1 "SUMO1 activating enzyme subunit 1" [Danio rerio (taxid:7955)]

 Score = 273 (101.2 bits), Expect = 5.3e-45, Sum P(2) = 5.3e-45
 Identities = 63/174 (36%), Positives = 96/174 (55%)

Query:     6 LTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV 65
             ++E+E A YDRQIR+WG DAQ+RL  S +L+ G++G  AE  KN++LAGV  LTL+D   
Sbjct:    12 ISEEEAAQYDRQIRLWGLDAQKRLRGSRVLLVGLRGLGAEVAKNLILAGVKGLTLLDHEQ 71

Query:    66 VTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEFYDKFD 125
             VTEE+  A FLIP D +   G+  A+   +  +  NPMV V  +   + S   +F+ +FD
Sbjct:    72 VTEESRRAQFLIPVDAD---GQNHAQASLERAQFLNPMVEVKADTEPVESKPDDFFFQFD 128

Query:   126 XXXXXXXXXXXXXLINEKCRKLSKRVAFYTVDCRDSCGEIFVDL-QNHKYSKQK 178
                           +++ C   S+ +  +  D     G +F DL Q + Y ++K
Sbjct:   129 AVCLTRCSRDLMVRVDQLCA--SRNIKVFCGDVYGYNGYMFSDLGQEYHYVEEK 180

GO:0000166 "nucleotide binding" evidence=IEA

GO:0008641 "small protein activating enzyme activity" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0006464 "cellular protein modification process" evidence=IEA

GO:0016925 "protein sumoylation" evidence=ISS;IMP

GO:0019948 "SUMO activating enzyme activity" evidence=ISS

GO:0008022 "protein C-terminus binding" evidence=ISS

GO:0016874 "ligase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0061484 "hematopoietic stem cell homeostasis" evidence=IMP

GO:0060216 "definitive hemopoiesis" evidence=IMP

UNIPROTKB|Q8JGT5 sae1 "SUMO-activating enzyme subunit 1" [Xenopus laevis (taxid:8355)]

 Score = 288 (106.4 bits), Expect = 7.6e-44, Sum P(2) = 7.6e-44
 Identities = 63/177 (35%), Positives = 97/177 (54%)

Query:     6 LTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV 65
             ++E+E A YDRQIR+WG +AQ+RL  S +L+ GM+G  AE  KN++LAGV +LTL+D   
Sbjct:     9 ISEEEAAQYDRQIRLWGLEAQKRLRTSRVLLVGMRGLGAEVAKNLILAGVKALTLLDHEQ 68

Query:    66 VTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEFYDKFD 125
             V+ E   A FLIP       G+  AE   +  ++ NPMV V  +  +++    +F+ +FD
Sbjct:    69 VSSEDSRAQFLIPSGSL---GQNRAEASLNRARNLNPMVSVEADTENINQKSDDFFTQFD 125

Query:   126 XXXXXXXXXXXXXLINEKCRKLSKRVAFYTVDCRDSCGEIFVDLQNHKYSKQKIEET 182
                           +N  C K    + F+T D     G +F DL  H++ ++K + T
Sbjct:   126 VVCLTSCPSDLLVRVNHICHK--HNIKFFTGDVYGYHGSMFADLGEHEFVEEKAKVT 180

GO:0016925 "protein sumoylation" evidence=ISS

GO:0019948 "SUMO activating enzyme activity" evidence=ISS

RGD|1306098 Sae1 "SUMO1 activating enzyme subunit 1" [Rattus norvegicus (taxid:10116)]

 Score = 275 (101.9 bits), Expect = 2.5e-43, Sum P(2) = 2.5e-43
 Identities = 64/180 (35%), Positives = 98/180 (54%)

Query:     3 GEELTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMD 62
             G  ++E+E A YDRQIR+WG +AQ+RL  S +L+ GMKG  AE  KN++LAGV  LT++D
Sbjct:    11 GGGISEEEAAQYDRQIRLWGLEAQKRLRASRVLIVGMKGLGAEIAKNLILAGVKGLTMLD 70

Query:    63 DRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEFYD 122
                V+ E   A FLI    +V  G+  AE   +  ++ NPMV V V+  D+      F+ 
Sbjct:    71 HEQVSPEDLGAQFLIRTG-SV--GQNRAEASLERAQNLNPMVDVKVDTEDIEKKPESFFT 127

Query:   123 KFDXXXXXXXXXXXXXLINEKCRKLSKRVAFYTVDCRDSCGEIFVDLQNHKYSKQKIEET 182
             +FD              +++ C + S  + F+T D     G  F +L  H++ ++K + T
Sbjct:   128 EFDAVCLTCCSKDVIIKVDQICHRNS--IKFFTGDVFGYHGYTFANLGEHEFVEEKTKVT 185

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0008022 "protein C-terminus binding" evidence=ISO;ISS

GO:0016874 "ligase activity" evidence=IEA

GO:0016925 "protein sumoylation" evidence=IEA;ISO;ISS

GO:0019948 "SUMO activating enzyme activity" evidence=ISO;ISS

GO:0043008 "ATP-dependent protein binding" evidence=IEA;ISO

GO:0043231 "intracellular membrane-bounded organelle" evidence=ISO

GO:0046982 "protein heterodimerization activity" evidence=ISO

GO:0005730 "nucleolus" evidence=ISO

MGI|MGI:1929264 Sae1 "SUMO1 activating enzyme subunit 1" [Mus musculus (taxid:10090)]

 Score = 275 (101.9 bits), Expect = 3.2e-43, Sum P(2) = 3.2e-43
 Identities = 64/176 (36%), Positives = 96/176 (54%)

Query:     3 GEELTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMD 62
             G  ++E+E A YDRQIR+WG +AQ+RL  S +L+ GMKG  AE  KN++LAGV  LT++D
Sbjct:    12 GGGISEEEAAQYDRQIRLWGLEAQKRLRASRVLIVGMKGLGAEIAKNLILAGVKGLTMLD 71

Query:    63 DRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEFYD 122
                V+ E   A FLI    +V  G+  AE   +  ++ NPMV V V+  D+      F+ 
Sbjct:    72 HEQVSPEDPGAQFLIQTG-SV--GRNRAEASLERAQNLNPMVDVKVDTEDVEKKPESFFT 128

Query:   123 KFDXXXXXXXXXXXXXLINEKCRKLSKRVAFYTVDCRDSCGEIFVDLQNHKYSKQK 178
             KFD              +++ C + S  + F+T D     G  F +L  H++ ++K
Sbjct:   129 KFDAVCLTCCSRDVIIKVDQICHRNS--IKFFTGDVFGYHGYTFANLGEHEFVEEK 182

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006464 "cellular protein modification process" evidence=IEA

GO:0008022 "protein C-terminus binding" evidence=ISO

GO:0008641 "small protein activating enzyme activity" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0016925 "protein sumoylation" evidence=ISO

GO:0043008 "ATP-dependent protein binding" evidence=ISO

GO:0046982 "protein heterodimerization activity" evidence=ISO

UNIPROTKB|F1RM03 SAE1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 268 (99.4 bits), Expect = 3.2e-43, Sum P(2) = 3.2e-43
 Identities = 63/176 (35%), Positives = 97/176 (55%)

Query:     3 GEELTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMD 62
             G  ++E+E A YDRQIR+WG +AQ+RL  S +L+ GMKG  AE  KN++LAGV  LT++D
Sbjct:     8 GGGISEEEAAQYDRQIRLWGLEAQKRLRASRVLLVGMKGLGAEIAKNLILAGVKGLTMLD 67

Query:    63 DRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEFYD 122
                V+ E   A FLI    +V  G+  AE   +  ++ NPMV V V+  ++ +    F+ 
Sbjct:    68 HEQVSPEDPGAQFLIRTG-SV--GRNRAEASLERAQNLNPMVDVKVDTENIENKPESFFT 124

Query:   123 KFDXXXXXXXXXXXXXLINEKCRKLSKRVAFYTVDCRDSCGEIFVDLQNHKYSKQK 178
             +FD              +++ C K S  + F+T D     G  F +L  H++ ++K
Sbjct:   125 QFDAVCLTCCSRDVIVKVDQICHKNS--IKFFTGDVFGYHGYTFANLGEHEFVEEK 178

GO:0043231 "intracellular membrane-bounded organelle" evidence=IEA

GO:0043008 "ATP-dependent protein binding" evidence=IEA

GO:0019948 "SUMO activating enzyme activity" evidence=IEA

GO:0008022 "protein C-terminus binding" evidence=IEA

GO:0006464 "cellular protein modification process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|A2VE14 SAE1 "SUMO-activating enzyme subunit 1" [Bos taurus (taxid:9913)]

 Score = 267 (99.0 bits), Expect = 3.2e-43, Sum P(2) = 3.2e-43
 Identities = 63/176 (35%), Positives = 96/176 (54%)

Query:     3 GEELTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMD 62
             G  ++E+E A YDRQIR+WG +AQ+RL  S +L+ GMKG  AE  KN++LAGV  LT++D
Sbjct:     8 GGGISEEEAAQYDRQIRLWGLEAQKRLRASQVLLVGMKGLGAEIAKNLILAGVKGLTMLD 67

Query:    63 DRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEFYD 122
                V+ E   A FLI    +V  G+  AE   +  ++ NPMV V V+  ++      F+ 
Sbjct:    68 HEQVSPEDPGAQFLIRTG-SV--GRNRAEASLERAQNLNPMVDVKVDTENIEKKPESFFT 124

Query:   123 KFDXXXXXXXXXXXXXLINEKCRKLSKRVAFYTVDCRDSCGEIFVDLQNHKYSKQK 178
             +FD              +++ C K S  + F+T D     G  F +L  H++ ++K
Sbjct:   125 QFDAVCLTCCSRDVIVKVDQICHKNS--IKFFTGDVFGYHGYTFANLGEHEFVEEK 178

GO:0008022 "protein C-terminus binding" evidence=ISS

GO:0019948 "SUMO activating enzyme activity" evidence=ISS

GO:0016925 "protein sumoylation" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=IEA

GO:0043008 "ATP-dependent protein binding" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|E2RSL5 SAE1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 264 (98.0 bits), Expect = 6.7e-43, Sum P(2) = 6.7e-43
 Identities = 62/176 (35%), Positives = 96/176 (54%)

Query:     3 GEELTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMD 62
             G  ++E+E A YDRQIR+WG +AQ+RL  S +L+ GMKG  AE  KN++LAGV  LT++D
Sbjct:     8 GGGISEEEAAQYDRQIRLWGLEAQKRLRASRVLLVGMKGLGAEIAKNLILAGVKGLTMLD 67

Query:    63 DRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEFYD 122
                V+ E   A FL+    +V  G+  AE   +  ++ NPMV V V+  ++      F+ 
Sbjct:    68 PEQVSPEDPGAQFLVRTG-SV--GRNRAEASLERAQNLNPMVDVKVDIENIEKKPESFFT 124

Query:   123 KFDXXXXXXXXXXXXXLINEKCRKLSKRVAFYTVDCRDSCGEIFVDLQNHKYSKQK 178
             +FD              +++ C K S  + F+T D     G  F +L  H++ ++K
Sbjct:   125 QFDAVCLTCCSRDVIVKVDQICHKNS--IKFFTGDVFGYHGYTFANLGEHEFVEEK 178

GO:0043231 "intracellular membrane-bounded organelle" evidence=IEA

GO:0043008 "ATP-dependent protein binding" evidence=IEA

GO:0019948 "SUMO activating enzyme activity" evidence=IEA

GO:0008022 "protein C-terminus binding" evidence=IEA

GO:0006464 "cellular protein modification process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q54WI4	SAE1_DICDI	No assigned EC number	0.3457	0.9382	0.9212	yes	no
P0DI12	SA1B1_ARATH	No assigned EC number	0.7255	0.9783	0.9906	no	no
P0DI13	SA1B2_ARATH	No assigned EC number	0.7255	0.9783	0.9906	no	no
Q5NVN7	SAE1_PONAB	No assigned EC number	0.3304	0.9382	0.8786	yes	no
Q9UBE0	SAE1_HUMAN	No assigned EC number	0.3304	0.9382	0.8786	yes	no
Q9R1T2	SAE1_MOUSE	No assigned EC number	0.3353	0.9135	0.8457	yes	no
Q6IQS6	SAE1_DANRE	No assigned EC number	0.3459	0.9413	0.8764	yes	no
Q28DS0	SAE1_XENTR	No assigned EC number	0.3177	0.9259	0.8645	yes	no
Q6AXQ0	SAE1_RAT	No assigned EC number	0.3293	0.9135	0.8481	yes	no
Q8VY78	SAE1A_ARATH	No assigned EC number	0.7350	0.9783	0.9844	yes	no
A2VE14	SAE1_BOVIN	No assigned EC number	0.3362	0.9382	0.8786	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	324
cd01492	197	cd01492, Aos1_SUMO, Ubiquitin activating enzyme (E	1e-70
cd01485	198	cd01485, E1-1_like, Ubiquitin activating enzyme (E	4e-33
cd01491	286	cd01491, Ube1_repeat1, Ubiquitin activating enzyme	2e-32
TIGR01408	1008	TIGR01408, Ube1, ubiquitin-activating enzyme E1	1e-26
cd01493	425	cd01493, APPBP1_RUB, Ubiquitin activating enzyme (	2e-22
COG0476	254	COG0476, ThiF, Dinucleotide-utilizing enzymes invo	1e-20
cd01492	197	cd01492, Aos1_SUMO, Ubiquitin activating enzyme (E	8e-15
cd00757	228	cd00757, ThiF_MoeB_HesA_family, ThiF_MoeB_HesA	3e-14
PTZ00245	287	PTZ00245, PTZ00245, ubiquitin activating enzyme; P	2e-12
TIGR01408	1008	TIGR01408, Ube1, ubiquitin-activating enzyme E1	8e-11
cd01483	143	cd01483, E1_enzyme_family, Superfamily of activati	2e-10
pfam00899	134	pfam00899, ThiF, ThiF family	7e-10
PRK08328	231	PRK08328, PRK08328, hypothetical protein; Provisio	1e-07
PRK05690	245	PRK05690, PRK05690, molybdopterin biosynthesis pro	3e-07
TIGR02356	202	TIGR02356, adenyl_thiF, thiazole biosynthesis aden	6e-07
cd01491	286	cd01491, Ube1_repeat1, Ubiquitin activating enzyme	9e-07
TIGR01408	1008	TIGR01408, Ube1, ubiquitin-activating enzyme E1	1e-06
PRK07878	392	PRK07878, PRK07878, molybdopterin biosynthesis-lik	1e-06
PRK05600	370	PRK05600, PRK05600, thiamine biosynthesis protein	3e-06
cd01484	234	cd01484, E1-2_like, Ubiquitin activating enzyme (E	6e-06
COG1179	263	COG1179, COG1179, Dinucleotide-utilizing enzymes i	9e-06
cd00755	231	cd00755, YgdL_like, Family of activating enzymes (	2e-05
TIGR02355	240	TIGR02355, moeB, molybdopterin synthase sulfurylas	4e-05
cd01485	198	cd01485, E1-1_like, Ubiquitin activating enzyme (E	1e-04
PRK05597	355	PRK05597, PRK05597, molybdopterin biosynthesis pro	1e-04
PRK08762	376	PRK08762, PRK08762, molybdopterin biosynthesis pro	4e-04
cd01493	425	cd01493, APPBP1_RUB, Ubiquitin activating enzyme (	5e-04
cd01488	291	cd01488, Uba3_RUB, Ubiquitin activating enzyme (E1	0.003
PRK07688	339	PRK07688, PRK07688, thiamine/molybdopterin biosynt	0.004

>gnl|CDD|238769 cd01492, Aos1_SUMO, Ubiquitin activating enzyme (E1) subunit Aos1

 Score =  217 bits (554), Expect = 1e-70
 Identities = 76/159 (47%), Positives = 98/159 (61%), Gaps = 5/159 (3%)

Query: 11  TALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEA 70
            ALYDRQIR+WG +AQ+RL  + IL+ G+KG  AE  KN+VL+G+GSLT++DDR VTEE 
Sbjct: 1   IALYDRQIRLWGLEAQKRLRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTVTEED 60

Query: 71  WSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEFYDKFDVVVVS 130
             A FLIP +     G+  AE   + L+  NP V+VSV+  D+S    EF+ +FDVVV +
Sbjct: 61  LGAQFLIPAE---DLGQNRAEASLERLRALNPRVKVSVDTDDISEKPEEFFSQFDVVVAT 117

Query: 131 CCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFVDL 169
             S      INE CRKL   V FY        G +F DL
Sbjct: 118 ELSRAELVKINELCRKL--GVKFYATGVHGLFGFVFADL 154

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain. Length = 197

>gnl|CDD|238762 cd01485, E1-1_like, Ubiquitin activating enzyme (E1), repeat 1-like

 Score =  120 bits (304), Expect = 4e-33
 Identities = 55/160 (34%), Positives = 85/160 (53%), Gaps = 6/160 (3%)

Query: 13  LYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWS 72
           LYDRQIR+WG +AQ +L  + +L+ G     AE  KN+VLAG+ S+T++D R+V+ E   
Sbjct: 1   LYDRQIRLWGDEAQNKLRSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRLVSTEDLG 60

Query: 73  ANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS-VEKGDLS--SLDGEFYDKFDVVVV 129
           +NF +   E    G   A    + L++ NP V++S VE+  LS  S   E+  KF +V+ 
Sbjct: 61  SNFFLDA-EVSNSGMNRAAASYEFLQELNPNVKLSIVEEDSLSNDSNIEEYLQKFTLVIA 119

Query: 130 SCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFVDL 169
           +  +      +N+ CRK    + F +       G  F D 
Sbjct: 120 TEENYERTAKVNDVCRKHH--IPFISCATYGLIGYAFFDF 157

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologous to the first repeat of Ub-E1. Length = 198

>gnl|CDD|238768 cd01491, Ube1_repeat1, Ubiquitin activating enzyme (E1), repeat 1

 Score =  121 bits (306), Expect = 2e-32
 Identities = 56/157 (35%), Positives = 84/157 (53%), Gaps = 8/157 (5%)

Query: 13  LYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWS 72
           LY RQ+ V G +A ++L KS++L+ G+ G   E  KN++LAGV S+TL D +  +    S
Sbjct: 1   LYSRQLYVLGHEAMKKLQKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKPCSWSDLS 60

Query: 73  ANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEFYDKFDVVVVSCC 132
           + F +  ++    GK  AE     L + NP V V+V  G L++   +   KF VVV++  
Sbjct: 61  SQFYLREEDI---GKNRAEASQARLAELNPYVPVTVSTGPLTT---DELLKFQVVVLTDA 114

Query: 133 SVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFVDL 169
           S+  +  INE C   S  + F + D R   G IF D 
Sbjct: 115 SLEDQLKINEFCH--SPGIKFISADTRGLFGSIFCDF 149

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1. Length = 286

>gnl|CDD|130475 TIGR01408, Ube1, ubiquitin-activating enzyme E1

 Score =  109 bits (275), Expect = 1e-26
 Identities = 59/161 (36%), Positives = 85/161 (52%), Gaps = 6/161 (3%)

Query: 8   EQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVT 67
           E + ALY RQ+ V G +A ++++KS++L+ GM G   E  KN+VLAGV S+TL D     
Sbjct: 1   EIDEALYSRQLYVLGDEAMQKMAKSNVLISGMGGLGLEIAKNLVLAGVKSVTLHDTEKCQ 60

Query: 68  EEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEFYDKFDVV 127
               S+NF +  D+    G+  AE     L + NP V VS         + EF DKF  V
Sbjct: 61  AWDLSSNFFLSEDDV---GRNRAEAVVKKLAELNPYVHVSSSS---VPFNEEFLDKFQCV 114

Query: 128 VVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFVD 168
           V++  S+  +K IN+ C      +AF + D R   G +F D
Sbjct: 115 VLTEMSLPLQKEINDFCHSQCPPIAFISADVRGLFGSLFCD 155

This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions. Length = 1008

>gnl|CDD|238770 cd01493, APPBP1_RUB, Ubiquitin activating enzyme (E1) subunit APPBP1

 Score = 96.6 bits (241), Expect = 2e-22
 Identities = 44/120 (36%), Positives = 64/120 (53%), Gaps = 6/120 (5%)

Query: 14  YDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSA 73
           YDRQ+R+WG   Q  L  +H+ +     T  E  KN+VL G+GS T++D   V EE    
Sbjct: 3   YDRQLRLWGEHGQAALESAHVCLLNATATGTEILKNLVLPGIGSFTIVDGSKVDEEDLGN 62

Query: 74  NFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS-VEKGDLSSLD--GEFYDKFDVVVVS 130
           NF +        GK+ AE  C+ L++ NP V  S VE+   + LD    F+ +F VV+ +
Sbjct: 63  NFFLDAS---SLGKSRAEATCELLQELNPDVNGSAVEESPEALLDNDPSFFSQFTVVIAT 119

APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain. Length = 425

>gnl|CDD|223552 COG0476, ThiF, Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]

 Score = 88.6 bits (220), Expect = 1e-20
 Identities = 53/176 (30%), Positives = 79/176 (44%), Gaps = 8/176 (4%)

Query: 4   EELTEQETALYDRQIRVW--GADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLM 61
             L+++E   Y RQI +   G + Q++L  S +LV G  G  +   K + LAGVG LT++
Sbjct: 1   SMLSDEEIERYSRQILLPGIGGEGQQKLKDSRVLVVGAGGLGSPAAKYLALAGVGKLTIV 60

Query: 62  DDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDG-EF 120
           D   V        FL   + +V  GK  AEV   +L+  NP+V V      L   +  E 
Sbjct: 61  DFDTVELSNLQRQFLF-TEADV--GKPKAEVAAKALRKLNPLVEVVAYLERLDEENAEEL 117

Query: 121 YDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFVDLQNHKYSK 176
             +FDVV+    +  T+ LIN+ C KL               G++ V +   K   
Sbjct: 118 IAQFDVVLDCTDNFETRYLINDACVKLGIP--LVHGGAIGFEGQVTVIIPGDKTPC 171

Length = 254

>gnl|CDD|238769 cd01492, Aos1_SUMO, Ubiquitin activating enzyme (E1) subunit Aos1

 Score = 71.6 bits (176), Expect = 8e-15
 Identities = 21/43 (48%), Positives = 26/43 (60%)

Query: 272 FTPVCAVVGGILGQEVIKAISCKGEPLKNFFFFDIMDGKGVVE 314
             PV AVVGGIL Q+VI A+S +  PL NFF FD    +  + 
Sbjct: 155 LAPVAAVVGGILAQDVINALSKRESPLNNFFVFDGETSEAPIY 197

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain. Length = 197

>gnl|CDD|238386 cd00757, ThiF_MoeB_HesA_family, ThiF_MoeB_HesA

 Score = 70.6 bits (174), Expect = 3e-14
 Identities = 47/147 (31%), Positives = 71/147 (48%), Gaps = 22/147 (14%)

Query: 14  YDRQIRV--WGADAQRRLSKSHILVCGMKG---TVAEFCKNIVLAGVGSLTLMDDRVVTE 68
           Y RQI +   G + Q +L  + +LV G  G     AE+      AGVG L L+DD VV  
Sbjct: 2   YSRQILLPEIGEEGQEKLKNARVLVVGAGGLGSPAAEYL---AAAGVGKLGLVDDDVV-- 56

Query: 69  EAWSANF---LIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV--EKGDLSSLDGEFYDK 123
              S N    ++  + +V  G+  AE   + L+  NP V +    E+ D  + + E    
Sbjct: 57  -ELS-NLQRQILHTEADV--GQPKAEAAAERLRAINPDVEIEAYNERLDAENAE-ELIAG 111

Query: 124 FDVVVVSCC-SVTTKKLINEKCRKLSK 149
           +D +V+ C  +  T+ LIN+ C KL K
Sbjct: 112 YD-LVLDCTDNFATRYLINDACVKLGK 137

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). . Length = 228

>gnl|CDD|140272 PTZ00245, PTZ00245, ubiquitin activating enzyme; Provisional

 Score = 65.8 bits (160), Expect = 2e-12
 Identities = 39/112 (34%), Positives = 61/112 (54%), Gaps = 6/112 (5%)

Query: 6   LTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV 65
           + + E   YDRQIR+WG   Q++L  + + + G+ G  AE  KN+VLAGV ++ + D+ +
Sbjct: 1   MRDAEAVRYDRQIRLWGKSTQQQLMHTSVALHGVAGAAAEAAKNLVLAGVRAVAVADEGL 60

Query: 66  VTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRV--SVEKGDLSS 115
           VT+     N+L+  +     G T       +L+  NP V V  +V K D SS
Sbjct: 61  VTDADVCTNYLMQGE----AGGTRGARALGALQRLNPHVSVYDAVTKLDGSS 108

Length = 287

>gnl|CDD|130475 TIGR01408, Ube1, ubiquitin-activating enzyme E1

 Score = 62.6 bits (152), Expect = 8e-11
 Identities = 38/143 (26%), Positives = 68/143 (47%), Gaps = 8/143 (5%)

Query: 181 ETIECQLRYPSFEEAISVPWRALPRKASKLYFALRVLEQFEEAEGRSPGEISIADLPAVL 240
           +++  QL+ P       +   + P +  +++ A + L+QF+E   R P      D   +L
Sbjct: 258 KSLREQLKDPKC----LIVDFSKPERPPEIHTAFQALDQFQEKYSRKPNVGCQQDAEELL 313

Query: 241 KLKKELCEANALNASHVTDSLLERLIIGTREF-TPVCAVVGGILGQEVIKAISCKGEPLK 299
           KL   + E        V   L+  L    + F +P+ A VGG++ QEV+KA++ K  PL 
Sbjct: 314 KLATSISETLEEKVPDVDAKLVHWLSWTAQGFLSPMAAAVGGVVSQEVLKAVTGKFSPLC 373

Query: 300 NFFFFDIMDGKGVVEDVSSPKKE 322
            +F+FD  +    +  +  P+ E
Sbjct: 374 QWFYFDSAE---SLPSLGKPECE 393

This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions. Length = 1008

>gnl|CDD|238760 cd01483, E1_enzyme_family, Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

 Score = 57.7 bits (140), Expect = 2e-10
 Identities = 33/127 (25%), Positives = 58/127 (45%), Gaps = 8/127 (6%)

Query: 33  HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEV 92
            +L+ G+ G  +E   N+  +GVG +TL+D   V     +  FL    +    GK  AEV
Sbjct: 1   RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADI---GKPKAEV 57

Query: 93  CCDSLKDFNPMVRVSVEKGDLSS-LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRV 151
               L + NP V V+     +S     +F D  D+V+ +  ++  ++ +N  C++L    
Sbjct: 58  AARRLNELNPGVNVTAVPEGISEDNLDDFLDGVDLVIDAIDNIAVRRALNRACKELGI-- 115

Query: 152 AFYTVDC 158
               +D 
Sbjct: 116 --PVIDA 120

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. Length = 143

>gnl|CDD|216180 pfam00899, ThiF, ThiF family

 Score = 56.0 bits (136), Expect = 7e-10
 Identities = 37/122 (30%), Positives = 55/122 (45%), Gaps = 4/122 (3%)

Query: 31  KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIA 90
            S +LV G  G  +   + +  AGVG LTL+D   V  E  + N  I   E+   GK  A
Sbjct: 1   SSRVLVVGAGGLGSPAAEYLARAGVGKLTLVDFDTV--ELSNLNRQILFTESDI-GKPKA 57

Query: 91  EVCCDSLKDFNPMVRVSVEKGDLSSLDG-EFYDKFDVVVVSCCSVTTKKLINEKCRKLSK 149
           EV  + L+  NP V V      L+  +  E     D+VV +  +   + L+N+ C K   
Sbjct: 58  EVAKERLRAINPDVEVEAYPERLTPENLEELLKGVDLVVDALDNFAARYLLNDACVKRGI 117

Query: 150 RV 151
            +
Sbjct: 118 PL 119

This family contains a repeated domain in ubiquitin activating enzyme E1 and members of the bacterial ThiF/MoeB/HesA family. Length = 134

>gnl|CDD|169382 PRK08328, PRK08328, hypothetical protein; Provisional

 Score = 51.0 bits (122), Expect = 1e-07
 Identities = 40/142 (28%), Positives = 67/142 (47%), Gaps = 3/142 (2%)

Query: 6   LTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV 65
           L+E+E   YDRQI ++G + Q +L K+ + V G+ G  +     +  AGVG + L+D++ 
Sbjct: 2   LSERELERYDRQIMIFGVEGQEKLKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQ- 60

Query: 66  VTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLD-GEFYDKF 124
            T E  + N  I   E   G           L+ FN  +++    G LS  +  E     
Sbjct: 61  -TPELSNLNRQILHWEEDLGKNPKPLSAKWKLERFNSDIKIETFVGRLSEENIDEVLKGV 119

Query: 125 DVVVVSCCSVTTKKLINEKCRK 146
           DV+V    +  T+ L+++   K
Sbjct: 120 DVIVDCLDNFETRYLLDDYAHK 141

Length = 231

>gnl|CDD|180204 PRK05690, PRK05690, molybdopterin biosynthesis protein MoeB; Provisional

 Score = 50.2 bits (121), Expect = 3e-07
 Identities = 40/153 (26%), Positives = 67/153 (43%), Gaps = 14/153 (9%)

Query: 4   EELTEQETALYDRQI--RVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLM 61
            EL+++E   Y+RQI  R +  D Q +L  + +LV G+ G      + +  AGVG+LTL+
Sbjct: 3   AELSDEEMLRYNRQIILRGFDFDGQEKLKAARVLVVGLGGLGCAASQYLAAAGVGTLTLV 62

Query: 62  DDRVVTEEAWSANF---LIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLS--SL 116
           D   V+     +N    ++  D  +  G+   E    +L   NP + +      L    L
Sbjct: 63  DFDTVS----LSNLQRQVLHDDATI--GQPKVESARAALARINPHIAIETINARLDDDEL 116

Query: 117 DGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSK 149
                   D+V+    +V T+  +N  C    K
Sbjct: 117 A-ALIAGHDLVLDCTDNVATRNQLNRACFAAKK 148

Length = 245

>gnl|CDD|162820 TIGR02356, adenyl_thiF, thiazole biosynthesis adenylyltransferase ThiF, E

 Score = 48.9 bits (117), Expect = 6e-07
 Identities = 39/143 (27%), Positives = 70/143 (48%), Gaps = 14/143 (9%)

Query: 14  YDRQIRV--WGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAW 71
           Y RQ+ +   G + Q+RL  SH+L+ G  G  +     +  AGVG++ ++DD  V     
Sbjct: 2   YARQLLLPDIGEEGQQRLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHVD---L 58

Query: 72  SANF---LIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDL--SSLDGEFYDKFDV 126
           S N    ++  +E+V  G+   EV    L++ N  ++V+  K  +   +L+    +  D+
Sbjct: 59  S-NLQRQILFTEEDV--GRPKVEVAAQRLRELNSDIQVTALKERVTAENLELLINN-VDL 114

Query: 127 VVVSCCSVTTKKLINEKCRKLSK 149
           V+    +  T+ LIN+ C  L  
Sbjct: 115 VLDCTDNFATRYLINDACVALGT 137

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli [Biosynthesis of cofactors, prosthetic groups, and carriers, Thiamine]. Length = 202

>gnl|CDD|238768 cd01491, Ube1_repeat1, Ubiquitin activating enzyme (E1), repeat 1

 Score = 49.2 bits (118), Expect = 9e-07
 Identities = 16/32 (50%), Positives = 21/32 (65%)

Query: 274 PVCAVVGGILGQEVIKAISCKGEPLKNFFFFD 305
           P+ A  GG+  QEV+KA S K  PLK + +FD
Sbjct: 246 PMAAFFGGLAAQEVLKACSGKFTPLKQWLYFD 277

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1. Length = 286

>gnl|CDD|130475 TIGR01408, Ube1, ubiquitin-activating enzyme E1

 Score = 49.5 bits (118), Expect = 1e-06
 Identities = 36/141 (25%), Positives = 66/141 (46%), Gaps = 13/141 (9%)

Query: 14  YDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGV-----GSLTLMDDRVVTE 68
           YD QI V+G   Q++L   +I + G      E  KN  L GV     G +T+ D  ++ +
Sbjct: 402 YDAQIAVFGDTFQQKLQNLNIFLVGCGAIGCEMLKNFALMGVGTGKKGMITVTDPDLIEK 461

Query: 69  EAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSS-----LDGEFYDK 123
              +  FL  P  ++  GK  +    D+    NP +++   +  +        + EFY+K
Sbjct: 462 SNLNRQFLFRP-HHI--GKPKSYTAADATLKINPQIKIDAHQNRVGPETETIFNDEFYEK 518

Query: 124 FDVVVVSCCSVTTKKLINEKC 144
            DVV+ +  +V  ++ ++ +C
Sbjct: 519 LDVVINALDNVEARRYVDSRC 539

This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions. Length = 1008

>gnl|CDD|181156 PRK07878, PRK07878, molybdopterin biosynthesis-like protein MoeZ; Validated

 Score = 49.3 bits (118), Expect = 1e-06
 Identities = 43/152 (28%), Positives = 74/152 (48%), Gaps = 12/152 (7%)

Query: 4   EELTEQETALYDRQ--IRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLM 61
            ELT  E A Y R   I   G D Q+RL  + +LV G  G  +     +  AGVG+L ++
Sbjct: 13  AELTRDEVARYSRHLIIPDVGVDGQKRLKNARVLVIGAGGLGSPTLLYLAAAGVGTLGIV 72

Query: 62  DDRVVTEEAWSANF---LIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDG 118
           +  VV E    +N    +I    +V  G++ A+   DS+ + NP+V V + +  L   + 
Sbjct: 73  EFDVVDE----SNLQRQVIHGQSDV--GRSKAQSARDSIVEINPLVNVRLHEFRLDPSNA 126

Query: 119 -EFYDKFDVVVVSCCSVTTKKLINEKCRKLSK 149
            E + ++D+++    +  T+ L+N+      K
Sbjct: 127 VELFSQYDLILDGTDNFATRYLVNDAAVLAGK 158

Length = 392

>gnl|CDD|235528 PRK05600, PRK05600, thiamine biosynthesis protein ThiF; Validated

 Score = 48.0 bits (114), Expect = 3e-06
 Identities = 39/139 (28%), Positives = 66/139 (47%), Gaps = 9/139 (6%)

Query: 5   ELTEQETALYDRQIRV--WGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMD 62
               + TA   RQ+ +  +G + Q RL  + +LV G  G      +++  AGVG++TL+D
Sbjct: 16  TSELRRTA---RQLALPGFGIEQQERLHNARVLVIGAGGLGCPAMQSLASAGVGTITLID 72

Query: 63  DRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDG-EFY 121
           D  V         L     +V  G+   EV  + LK+  P +RV+  +  L++ +  E  
Sbjct: 73  DDTVDVSNIHRQILFGA-SDV--GRPKVEVAAERLKEIQPDIRVNALRERLTAENAVELL 129

Query: 122 DKFDVVVVSCCSVTTKKLI 140
           +  D+V+    S  TK L+
Sbjct: 130 NGVDLVLDGSDSFATKFLV 148

Length = 370

>gnl|CDD|238761 cd01484, E1-2_like, Ubiquitin activating enzyme (E1), repeat 2-like

 Score = 46.4 bits (110), Expect = 6e-06
 Identities = 26/119 (21%), Positives = 54/119 (45%), Gaps = 6/119 (5%)

Query: 34  ILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVC 93
           +L+ G  G   E  KN+ L G G + ++D   +     +  FL  P +    G+  +EV 
Sbjct: 2   VLLVGAGGIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQFLFRPKDI---GRPKSEVA 58

Query: 94  CDSLKDFNPMVRVSVEK---GDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSK 149
            +++ D NP  +V   +   G     +  F+++F ++V +  ++  ++ +N     L  
Sbjct: 59  AEAVNDRNPNCKVVPYQNKVGPEQDFNDTFFEQFHIIVNALDNIIARRYVNGMLIFLIV 117

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologous to the second repeat of Ub-E1. Length = 234

>gnl|CDD|224100 COG1179, COG1179, Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]

 Score = 46.1 bits (110), Expect = 9e-06
 Identities = 37/133 (27%), Positives = 60/133 (45%), Gaps = 11/133 (8%)

Query: 19  RVWGADAQRRLSKSHILVCGMKGTVAEFCKN-IVLAGVGSLTL--MDDRVVTEEAWSANF 75
           R++G D   +L ++H+ V G+ G V  +    +  +G+G +TL  MDD  VT    + N 
Sbjct: 18  RLYGEDGLEKLKQAHVCVVGI-GGVGSWAVEALARSGIGRITLIDMDDVCVT----NTNR 72

Query: 76  LIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV--EKGDLSSLDGEFYDKFDVVVVSCCS 133
            I        GK   EV  + +K  NP   V+   +     +L+      FD V+ +  S
Sbjct: 73  QIHALLGDI-GKPKVEVMKERIKQINPECEVTAINDFITEENLEDLLSKGFDYVIDAIDS 131

Query: 134 VTTKKLINEKCRK 146
           V  K  +   CR+
Sbjct: 132 VRAKVALIAYCRR 144

Length = 263

>gnl|CDD|238384 cd00755, YgdL_like, Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

 Score = 44.5 bits (106), Expect = 2e-05
 Identities = 35/128 (27%), Positives = 55/128 (42%), Gaps = 7/128 (5%)

Query: 22  GADAQRRLSKSHILVCGMKGTVAEF-CKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPD 80
           G +   +L  +H+ V G+ G V  +  + +  +GVG LTL+D  VV     + N  I   
Sbjct: 2   GEEGLEKLRNAHVAVVGL-GGVGSWAAEALARSGVGKLTLIDFDVVCVS--NLNRQIHAL 58

Query: 81  ENVYGGKTIAEVCCDSLKDFNPMVRVSV--EKGDLSSLDGEFYDKFDVVVVSCCSVTTKK 138
            +   GK   EV  + ++D NP   V    E     + +       D VV +  S+  K 
Sbjct: 59  LSTV-GKPKVEVMAERIRDINPECEVDAVEEFLTPDNSEDLLGGDPDFVVDAIDSIRAKV 117

Query: 139 LINEKCRK 146
            +   CRK
Sbjct: 118 ALIAYCRK 125

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. Length = 231

>gnl|CDD|131408 TIGR02355, moeB, molybdopterin synthase sulfurylase MoeB

 Score = 44.0 bits (104), Expect = 4e-05
 Identities = 37/134 (27%), Positives = 60/134 (44%), Gaps = 6/134 (4%)

Query: 14  YDRQI--RVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAW 71
           Y+RQI  R +  D Q  L  S +L+ G+ G      + +  AGVG+LTL+D   V+    
Sbjct: 5   YNRQIILRGFDFDGQEALKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNL 64

Query: 72  SANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLD-GEFYDKFDVVVVS 130
               L   D N+  G+   E   D+L   NP + ++     L   +      + D+VV  
Sbjct: 65  QRQVL-HSDANI--GQPKVESAKDALTQINPHIAINPINAKLDDAELAALIAEHDIVVDC 121

Query: 131 CCSVTTKKLINEKC 144
             +V  +  +N +C
Sbjct: 122 TDNVEVRNQLNRQC 135

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899) [Biosynthesis of cofactors, prosthetic groups, and carriers, Molybdopterin]. Length = 240

>gnl|CDD|238762 cd01485, E1-1_like, Ubiquitin activating enzyme (E1), repeat 1-like

 Score = 41.6 bits (98), Expect = 1e-04
 Identities = 15/34 (44%), Positives = 22/34 (64%)

Query: 274 PVCAVVGGILGQEVIKAISCKGEPLKNFFFFDIM 307
           P+ A +GG++ QE IK+IS K  PL N + +D  
Sbjct: 158 PIAAFLGGVVAQEAIKSISGKFTPLNNLYIYDGF 191

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologous to the first repeat of Ub-E1. Length = 198

>gnl|CDD|235526 PRK05597, PRK05597, molybdopterin biosynthesis protein MoeB; Validated

 Score = 42.9 bits (101), Expect = 1e-04
 Identities = 30/102 (29%), Positives = 47/102 (46%), Gaps = 11/102 (10%)

Query: 12  ALYDRQIRV--WGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEE 69
           A Y RQI +   G   Q+ L  + + V G  G  +     +  AGVG +T++DD  V   
Sbjct: 7   ARYRRQIMLGEIGQQGQQSLFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDTVDL- 65

Query: 70  AWSANF---LIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV 108
              +N    +I     V  G+  AE   +++   NP V+V+V
Sbjct: 66  ---SNLHRQVIHSTAGV--GQPKAESAREAMLALNPDVKVTV 102

Length = 355

>gnl|CDD|236337 PRK08762, PRK08762, molybdopterin biosynthesis protein MoeB; Validated

 Score = 41.5 bits (98), Expect = 4e-04
 Identities = 41/152 (26%), Positives = 73/152 (48%), Gaps = 12/152 (7%)

Query: 6   LTEQETALYDRQIRV--WGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD 63
           LT+++   Y R +R+   G + QRRL ++ +L+ G  G  +     +  AGVG+L ++D 
Sbjct: 108 LTDEQDERYSRHLRLPEVGEEGQRRLLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDH 167

Query: 64  RVVTEEAWSANF---LIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLD-GE 119
            VV      +N    ++  ++ V  G+   +     L   NP V+V   +  ++S +   
Sbjct: 168 DVVD----RSNLQRQILHTEDRV--GQPKVDSAAQRLAALNPDVQVEAVQERVTSDNVEA 221

Query: 120 FYDKFDVVVVSCCSVTTKKLINEKCRKLSKRV 151
                DVVV    +  T+ L+N+ C KL K +
Sbjct: 222 LLQDVDVVVDGADNFPTRYLLNDACVKLGKPL 253

Length = 376

>gnl|CDD|238770 cd01493, APPBP1_RUB, Ubiquitin activating enzyme (E1) subunit APPBP1

 Score = 41.1 bits (97), Expect = 5e-04
 Identities = 32/104 (30%), Positives = 45/104 (43%), Gaps = 20/104 (19%)

Query: 213 ALRVLEQFEEAE---GRSPGEISIADLPAVLKLKKELCEANALNASHVTDSLLERLIIGT 269
           A  V +   E     GRSP  IS  ++       K  C+    NA+ +      R+I G 
Sbjct: 338 AAEVEKYVREILKSLGRSPDSISDKEI-------KLFCK----NAAFL------RVIRGR 380

Query: 270 REFTPVCAVVGGILGQEVIKAISCKGEPLKNFFFFDIMDGKGVV 313
                + A +GGI  QEVIK I+ +  P+ N F FD +  K   
Sbjct: 381 SLEHNISAFMGGIAAQEVIKLITKQYVPIDNTFIFDGIRSKSAT 424

APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain. Length = 425

>gnl|CDD|238765 cd01488, Uba3_RUB, Ubiquitin activating enzyme (E1) subunit UBA3

 Score = 38.5 bits (90), Expect = 0.003
 Identities = 31/110 (28%), Positives = 53/110 (48%), Gaps = 3/110 (2%)

Query: 33  HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEV 92
            ILV G  G   E  KN+ L+G  ++ ++D   +     +  FL    +++  GK  AEV
Sbjct: 1   KILVIGAGGLGCELLKNLALSGFRNIHVIDMDTIDVSNLNRQFLFRE-KDI--GKPKAEV 57

Query: 93  CCDSLKDFNPMVRVSVEKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINE 142
               + D  P V V+   G +   D EFY +F++++    S+  ++ IN 
Sbjct: 58  AAKFVNDRVPGVNVTPHFGKIQDKDEEFYRQFNIIICGLDSIEARRWING 107

UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. Length = 291

>gnl|CDD|181084 PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

 Score = 38.0 bits (89), Expect = 0.004
 Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 8/54 (14%)

Query: 14 YDRQIRVW--GADAQRRLSKSHILVCGMK--GTV-AEFCKNIVLAGVGSLTLMD 62
          Y RQ      G + Q++L + H+L+ G    GT  AE    +V AGVG +T++D
Sbjct: 5  YSRQELFSPIGEEGQQKLREKHVLIIGAGALGTANAE---MLVRAGVGKVTIVD 55

Length = 339

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	324
KOG2014	331	consensus SMT3/SUMO-activating complex, AOS1/RAD31	100.0
TIGR01408	1008	Ube1 ubiquitin-activating enzyme E1. This model re	100.0
KOG2012	1013	consensus Ubiquitin activating enzyme UBA1 [Posttr	100.0
cd01493	425	APPBP1_RUB Ubiquitin activating enzyme (E1) subuni	100.0
cd01491	286	Ube1_repeat1 Ubiquitin activating enzyme (E1), rep	100.0
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	100.0
KOG2016	523	consensus NEDD8-activating complex, APP-BP1/UBA5 c	100.0
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	100.0
cd01485	198	E1-1_like Ubiquitin activating enzyme (E1), repeat	100.0
PRK08328	231	hypothetical protein; Provisional	100.0
PRK07411	390	hypothetical protein; Validated	100.0
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	100.0
PRK07878	392	molybdopterin biosynthesis-like protein MoeZ; Vali	100.0
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	100.0
PRK08223	287	hypothetical protein; Validated	100.0
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	100.0
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	100.0
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	100.0
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	100.0
KOG2017	427	consensus Molybdopterin synthase sulfurylase [Coen	100.0
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	100.0
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	100.0
cd01488	291	Uba3_RUB Ubiquitin activating enzyme (E1) subunit	100.0
COG0476	254	ThiF Dinucleotide-utilizing enzymes involved in mo	100.0
cd01489	312	Uba2_SUMO Ubiquitin activating enzyme (E1) subunit	100.0
cd01484	234	E1-2_like Ubiquitin activating enzyme (E1), repeat	100.0
KOG2015	422	consensus NEDD8-activating complex, catalytic comp	100.0
PRK14852	989	hypothetical protein; Provisional	100.0
PRK14851	679	hypothetical protein; Provisional	100.0
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	100.0
TIGR03603	318	cyclo_dehy_ocin bacteriocin biosynthesis cyclodehy	100.0
PTZ00245	287	ubiquitin activating enzyme; Provisional	100.0
TIGR01408	1008	Ube1 ubiquitin-activating enzyme E1. This model re	100.0
PRK15116	268	sulfur acceptor protein CsdL; Provisional	100.0
cd01490	435	Ube1_repeat2 Ubiquitin activating enzyme (E1), rep	100.0
PRK07877	722	hypothetical protein; Provisional	100.0
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	99.98
KOG2013	603	consensus SMT3/SUMO-activating complex, catalytic	99.97
cd00755	231	YgdL_like Family of activating enzymes (E1) of ubi	99.97
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	99.97
COG1179	263	Dinucleotide-utilizing enzymes involved in molybdo	99.97
TIGR01381	664	E1_like_apg7 E1-like protein-activating enzyme Gsa	99.97
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	99.96
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	99.96
cd01486	307	Apg7 Apg7 is an E1-like protein, that activates tw	99.95
KOG2012	1013	consensus Ubiquitin activating enzyme UBA1 [Posttr	99.95
PRK06153	393	hypothetical protein; Provisional	99.93
KOG2018	430	consensus Predicted dinucleotide-utilizing enzyme	99.91
TIGR03736	244	PRTRC_ThiF PRTRC system ThiF family protein. A nov	99.91
TIGR03693	637	ocin_ThiF_like putative thiazole-containing bacter	99.87
KOG2336	422	consensus Molybdopterin biosynthesis-related prote	99.87
KOG2337	669	consensus Ubiquitin activating E1 enzyme-like prot	99.69
COG4015	217	Predicted dinucleotide-utilizing enzyme of the Thi	98.68
PF05237	84	MoeZ_MoeB: MoeZ/MoeB domain; InterPro: IPR007901 T	98.41
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	98.08
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	98.04
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	98.04
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	98.03
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	97.89
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	97.81
PRK06719	157	precorrin-2 dehydrogenase; Validated	97.72
PRK05562	223	precorrin-2 dehydrogenase; Provisional	97.58
PRK12548	289	shikimate 5-dehydrogenase; Provisional	97.53
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	97.38
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	97.36
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	97.32
PRK04148	134	hypothetical protein; Provisional	97.29
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	97.27
TIGR03882	193	cyclo_dehyd_2 bacteriocin biosynthesis cyclodehydr	97.26
PRK12749	288	quinate/shikimate dehydrogenase; Reviewed	97.26
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	97.18
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	97.11
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	97.07
PRK13940	414	glutamyl-tRNA reductase; Provisional	97.06
COG0169	283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	97.04
COG1648	210	CysG Siroheme synthase (precorrin-2 oxidase/ferroc	97.01
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	96.94
PRK10637	457	cysG siroheme synthase; Provisional	96.93
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	96.88
COG0569	225	TrkA K+ transport systems, NAD-binding component [	96.85
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	96.81
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	96.76
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	96.76
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	96.71
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	96.71
PF02134	67	UBACT: Repeat in ubiquitin-activating (UBA) protei	96.63
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	96.63
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	96.62
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	96.61
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	96.59
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	96.52
PRK09599	301	6-phosphogluconate dehydrogenase-like protein; Rev	96.49
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	96.48
COG1086	588	Predicted nucleoside-diphosphate sugar epimerases	96.33
KOG0069	336	consensus Glyoxylate/hydroxypyruvate reductase (D-	96.32
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.29
PF01113	124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	96.23
PLN00203	519	glutamyl-tRNA reductase	96.23
cd00300	300	LDH_like L-lactate dehydrogenase-like enzymes. Mem	96.22
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.21
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	96.16
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	96.15
PRK12550	272	shikimate 5-dehydrogenase; Reviewed	96.14
PTZ00082	321	L-lactate dehydrogenase; Provisional	96.13
PTZ00117	319	malate dehydrogenase; Provisional	96.13
PLN02602	350	lactate dehydrogenase	96.12
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	96.12
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.09
PRK09496	453	trkA potassium transporter peripheral membrane com	96.09
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.07
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	96.05
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.04
PRK03562	621	glutathione-regulated potassium-efflux system prot	96.04
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	96.03
PRK13403	335	ketol-acid reductoisomerase; Provisional	96.02
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	95.98
PRK08618	325	ornithine cyclodeaminase; Validated	95.98
PRK11880	267	pyrroline-5-carboxylate reductase; Reviewed	95.95
PRK06141	314	ornithine cyclodeaminase; Validated	95.94
PRK07574	385	formate dehydrogenase; Provisional	95.93
PLN02819	1042	lysine-ketoglutarate reductase/saccharopine dehydr	95.92
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	95.9
PRK05479	330	ketol-acid reductoisomerase; Provisional	95.89
TIGR02992	326	ectoine_eutC ectoine utilization protein EutC. Mem	95.88
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	95.86
COG0111	324	SerA Phosphoglycerate dehydrogenase and related de	95.85
PRK03659	601	glutathione-regulated potassium-efflux system prot	95.84
PF01118	121	Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi	95.84
PRK07680	273	late competence protein ComER; Validated	95.82
PRK10537	393	voltage-gated potassium channel; Provisional	95.81
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	95.8
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	95.79
PLN02350	493	phosphogluconate dehydrogenase (decarboxylating)	95.72
PRK12491	272	pyrroline-5-carboxylate reductase; Reviewed	95.71
PF03949	255	Malic_M: Malic enzyme, NAD binding domain; InterPr	95.71
PRK07340	304	ornithine cyclodeaminase; Validated	95.69
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	95.68
PTZ00142	470	6-phosphogluconate dehydrogenase; Provisional	95.67
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	95.66
PRK07417	279	arogenate dehydrogenase; Reviewed	95.66
PRK13243	333	glyoxylate reductase; Reviewed	95.65
PF02719	293	Polysacc_synt_2: Polysaccharide biosynthesis prote	95.62
PLN03139	386	formate dehydrogenase; Provisional	95.62
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.61
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	95.57
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	95.53
PRK10669	558	putative cation:proton antiport protein; Provision	95.53
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	95.51
PRK08410	311	2-hydroxyacid dehydrogenase; Provisional	95.47
cd05312	279	NAD_bind_1_malic_enz NAD(P) binding domain of mali	95.44
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	95.42
PLN02688	266	pyrroline-5-carboxylate reductase	95.4
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	95.39
PRK07634	245	pyrroline-5-carboxylate reductase; Reviewed	95.37
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	95.36
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	95.33
PRK00048	257	dihydrodipicolinate reductase; Provisional	95.33
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	95.31
PRK12439	341	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	95.31
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	95.27
PRK09496	453	trkA potassium transporter peripheral membrane com	95.26
PRK07679	279	pyrroline-5-carboxylate reductase; Reviewed	95.24
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.21
PRK06197	306	short chain dehydrogenase; Provisional	95.19
TIGR00873	467	gnd 6-phosphogluconate dehydrogenase, decarboxylat	95.18
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	95.18
PRK05854	313	short chain dehydrogenase; Provisional	95.17
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	95.17
PRK07063	260	short chain dehydrogenase; Provisional	95.14
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	95.14
PRK14982	340	acyl-ACP reductase; Provisional	95.12
PRK08291	330	ectoine utilization protein EutC; Validated	95.1
PRK06932	314	glycerate dehydrogenase; Provisional	95.1
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	95.07
PRK05225	487	ketol-acid reductoisomerase; Validated	95.06
PRK06223	307	malate dehydrogenase; Reviewed	95.05
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	95.05
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.02
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.99
TIGR01759	323	MalateDH-SF1 malate dehydrogenase. This model repr	94.98
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	94.97
PRK12480	330	D-lactate dehydrogenase; Provisional	94.96
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	94.94
cd00762	254	NAD_bind_malic_enz NAD(P) binding domain of malic	94.93
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	94.92
PRK12490	299	6-phosphogluconate dehydrogenase-like protein; Rev	94.92
PTZ00345	365	glycerol-3-phosphate dehydrogenase; Provisional	94.91
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	94.91
PRK13304	265	L-aspartate dehydrogenase; Reviewed	94.9
PRK06928	277	pyrroline-5-carboxylate reductase; Reviewed	94.9
COG0281	432	SfcA Malic enzyme [Energy production and conversio	94.88
cd00650	263	LDH_MDH_like NAD-dependent, lactate dehydrogenase-	94.87
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	94.87
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	94.86
PRK09242	257	tropinone reductase; Provisional	94.83
PLN03209	576	translocon at the inner envelope of chloroplast su	94.82
KOG4169	261	consensus 15-hydroxyprostaglandin dehydrogenase an	94.82
TIGR01757	387	Malate-DH_plant malate dehydrogenase, NADP-depende	94.81
TIGR03376	342	glycerol3P_DH glycerol-3-phosphate dehydrogenase (	94.76
PRK08251	248	short chain dehydrogenase; Provisional	94.75
PLN02240	352	UDP-glucose 4-epimerase	94.74
COG0300	265	DltE Short-chain dehydrogenases of various substra	94.72
COG0240	329	GpsA Glycerol-3-phosphate dehydrogenase [Energy pr	94.7
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	94.67
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	94.67
COG1023	300	Gnd Predicted 6-phosphogluconate dehydrogenase [Ca	94.66
PRK08655	437	prephenate dehydrogenase; Provisional	94.65
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.6
PRK06476	258	pyrroline-5-carboxylate reductase; Reviewed	94.58
PLN02520	529	bifunctional 3-dehydroquinate dehydratase/shikimat	94.55
COG0039	313	Mdh Malate/lactate dehydrogenases [Energy producti	94.52
PRK13301	267	putative L-aspartate dehydrogenase; Provisional	94.51
PLN02427	386	UDP-apiose/xylose synthase	94.5
PRK06545	359	prephenate dehydrogenase; Validated	94.48
cd01338	322	MDH_choloroplast_like Chloroplast-like malate dehy	94.37
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.34
PF10087	97	DUF2325: Uncharacterized protein conserved in bact	94.34
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.32
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	94.29
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	94.28
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	94.28
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	94.27
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	94.24
PRK09310	477	aroDE bifunctional 3-dehydroquinate dehydratase/sh	94.17
cd01337	310	MDH_glyoxysomal_mitochondrial Glyoxysomal and mito	94.13
COG1712	255	Predicted dinucleotide-utilizing enzyme [General f	94.12
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	94.11
PRK07062	265	short chain dehydrogenase; Provisional	94.1
cd00704	323	MDH Malate dehydrogenase. Malate dehydrogenase (MD	94.09
PRK08507	275	prephenate dehydrogenase; Validated	94.09
PRK07831	262	short chain dehydrogenase; Provisional	94.08
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	94.05
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	94.03
PLN02780	320	ketoreductase/ oxidoreductase	94.02
TIGR00465	314	ilvC ketol-acid reductoisomerase. This is the seco	94.02
PLN00106	323	malate dehydrogenase	94.02
PRK13302	271	putative L-aspartate dehydrogenase; Provisional	94.0
TIGR03589	324	PseB UDP-N-acetylglucosamine 4,6-dehydratase. This	94.0
TIGR01771	299	L-LDH-NAD L-lactate dehydrogenase. This model repr	93.99
PTZ00325	321	malate dehydrogenase; Provisional	93.98
PRK13529	563	malate dehydrogenase; Provisional	93.94
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	93.92
PLN02206	442	UDP-glucuronate decarboxylase	93.89
PRK02006	498	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.89
cd05296	419	GH4_P_beta_glucosidase Glycoside Hydrolases Family	93.89
PRK15059	292	tartronate semialdehyde reductase; Provisional	93.88
PRK05875	276	short chain dehydrogenase; Provisional	93.87
PTZ00431	260	pyrroline carboxylate reductase; Provisional	93.83
PRK07478	254	short chain dehydrogenase; Provisional	93.82
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	93.82
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.82
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	93.81
TIGR00065	349	ftsZ cell division protein FtsZ. This family consi	93.78
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.77
TIGR00036	266	dapB dihydrodipicolinate reductase.	93.77
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	93.76
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	93.75
PLN03075	296	nicotianamine synthase; Provisional	93.72
TIGR01772	312	MDH_euk_gproteo malate dehydrogenase, NAD-dependen	93.69
PRK13018	378	cell division protein FtsZ; Provisional	93.67
PRK00811	283	spermidine synthase; Provisional	93.66
PRK09330	384	cell division protein FtsZ; Validated	93.65
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.58
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	93.56
PRK04690	468	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.53
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	93.51
PRK05442	326	malate dehydrogenase; Provisional	93.51
PLN02306	386	hydroxypyruvate reductase	93.5
PRK11908	347	NAD-dependent epimerase/dehydratase family protein	93.49
PRK12826	251	3-ketoacyl-(acyl-carrier-protein) reductase; Revie	93.48
TIGR02622	349	CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member	93.45
cd01076	227	NAD_bind_1_Glu_DH NAD(P) binding domain of glutama	93.44
PRK03803	448	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.37
PLN03129	581	NADP-dependent malic enzyme; Provisional	93.37
TIGR01181	317	dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This	93.37
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	93.33
PRK08374	336	homoserine dehydrogenase; Provisional	93.29
COG1250	307	FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo	93.25
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	93.24
COG1052	324	LdhA Lactate dehydrogenase and related dehydrogena	93.19
cd05211	217	NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of	93.14
PRK12939	250	short chain dehydrogenase; Provisional	93.11
PRK00676	338	hemA glutamyl-tRNA reductase; Validated	93.1
PLN00112	444	malate dehydrogenase (NADP); Provisional	93.09
PRK05867	253	short chain dehydrogenase; Provisional	93.09
PRK06949	258	short chain dehydrogenase; Provisional	93.09
TIGR01692	288	HIBADH 3-hydroxyisobutyrate dehydrogenase. This en	93.08
PLN00016	378	RNA-binding protein; Provisional	93.02
PF00106	167	adh_short: short chain dehydrogenase alcohol dehyd	93.01
PRK06046	326	alanine dehydrogenase; Validated	92.98
PRK05866	293	short chain dehydrogenase; Provisional	92.97
PLN02256	304	arogenate dehydrogenase	92.95
PRK12862	763	malic enzyme; Reviewed	92.9
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	92.85
PRK11730	715	fadB multifunctional fatty acid oxidation complex	92.85
PRK06172	253	short chain dehydrogenase; Provisional	92.84
PRK15409	323	bifunctional glyoxylate/hydroxypyruvate reductase	92.84
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	92.81
PLN02896	353	cinnamyl-alcohol dehydrogenase	92.79
PLN02166	436	dTDP-glucose 4,6-dehydratase	92.74
TIGR03206	250	benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr	92.71
PRK08605	332	D-lactate dehydrogenase; Validated	92.7
PRK07576	264	short chain dehydrogenase; Provisional	92.7
PRK00421	461	murC UDP-N-acetylmuramate--L-alanine ligase; Provi	92.65
PRK09186	256	flagellin modification protein A; Provisional	92.63
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	92.6
PRK10675	338	UDP-galactose-4-epimerase; Provisional	92.6
PRK06436	303	glycerate dehydrogenase; Provisional	92.57
cd02201	304	FtsZ_type1 FtsZ is a GTPase that is similar to the	92.56
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	92.54
PRK08213	259	gluconate 5-dehydrogenase; Provisional	92.51
PRK06181	263	short chain dehydrogenase; Provisional	92.46
PRK06935	258	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	92.46
PRK06139	330	short chain dehydrogenase; Provisional	92.44
PRK15181	348	Vi polysaccharide biosynthesis protein TviC; Provi	92.41
PRK06199	379	ornithine cyclodeaminase; Validated	92.4
PF01408	120	GFO_IDH_MocA: Oxidoreductase family, NAD-binding R	92.37
PLN02928	347	oxidoreductase family protein	92.36
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	92.36
TIGR02632	676	RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alc	92.35
cd05197	425	GH4_glycoside_hydrolases Glycoside Hydrases Family	92.34
PRK12861	764	malic enzyme; Reviewed	92.34
COG2084	286	MmsB 3-hydroxyisobutyrate dehydrogenase and relate	92.3
KOG1205	282	consensus Predicted dehydrogenase [Secondary metab	92.29
cd05298	437	GH4_GlvA_pagL_like Glycoside Hydrolases Family 4;	92.24
PRK07035	252	short chain dehydrogenase; Provisional	92.21
TIGR02371	325	ala_DH_arch alanine dehydrogenase, Archaeoglobus f	92.2
TIGR01758	324	MDH_euk_cyt malate dehydrogenase, NAD-dependent. T	92.19
PRK05565	247	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	92.13
COG1091	281	RfbD dTDP-4-dehydrorhamnose reductase [Cell envelo	92.11
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	92.1
PRK13394	262	3-hydroxybutyrate dehydrogenase; Provisional	92.09
PRK07523	255	gluconate 5-dehydrogenase; Provisional	92.08
PRK06138	252	short chain dehydrogenase; Provisional	91.99
PRK07666	239	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	91.96
PRK12429	258	3-hydroxybutyrate dehydrogenase; Provisional	91.93
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	91.92
PLN02657	390	3,8-divinyl protochlorophyllide a 8-vinyl reductas	91.92
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	91.91
PRK06567	1028	putative bifunctional glutamate synthase subunit b	91.89
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	91.86
PRK08339	263	short chain dehydrogenase; Provisional	91.83
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	91.77
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	91.74
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	91.73
PLN02858	1378	fructose-bisphosphate aldolase	91.67
PLN02214	342	cinnamoyl-CoA reductase	91.58
PRK07814	263	short chain dehydrogenase; Provisional	91.55
PRK12746	254	short chain dehydrogenase; Provisional	91.55
cd05294	309	LDH-like_MDH_nadp A lactate dehydrogenases-like st	91.54
PRK12937	245	short chain dehydrogenase; Provisional	91.51
PLN00141	251	Tic62-NAD(P)-related group II protein; Provisional	91.44
PRK12384	259	sorbitol-6-phosphate dehydrogenase; Provisional	91.41
PRK12825	249	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	91.41
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	91.41
PRK15438	378	erythronate-4-phosphate dehydrogenase PdxB; Provis	91.39
PRK06125	259	short chain dehydrogenase; Provisional	91.36
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	91.35
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	91.34
PRK06194	287	hypothetical protein; Provisional	91.32
PRK07774	250	short chain dehydrogenase; Provisional	91.31
PRK07102	243	short chain dehydrogenase; Provisional	91.3
PRK07453	322	protochlorophyllide oxidoreductase; Validated	91.27
PRK12829	264	short chain dehydrogenase; Provisional	91.26
CHL00194	317	ycf39 Ycf39; Provisional	91.25
PRK12779	944	putative bifunctional glutamate synthase subunit b	91.21
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	91.16
PRK07232	752	bifunctional malic enzyme oxidoreductase/phosphotr	91.11
PLN02989	325	cinnamyl-alcohol dehydrogenase family protein	91.08
PRK06940	275	short chain dehydrogenase; Provisional	91.07
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	91.02
PRK08063	250	enoyl-(acyl carrier protein) reductase; Provisiona	91.02
PRK06914	280	short chain dehydrogenase; Provisional	91.02
PLN02852	491	ferredoxin-NADP+ reductase	91.01
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	91.0
PRK08277	278	D-mannonate oxidoreductase; Provisional	91.0
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	90.97
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	90.95
PRK06198	260	short chain dehydrogenase; Provisional	90.89
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	90.87
PLN02366	308	spermidine synthase	90.83
PRK00257	381	erythronate-4-phosphate dehydrogenase; Validated	90.82
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	90.78
COG1062	366	AdhC Zn-dependent alcohol dehydrogenases, class II	90.77
TIGR01087	433	murD UDP-N-acetylmuramoylalanine--D-glutamate liga	90.74
PRK07326	237	short chain dehydrogenase; Provisional	90.73
PRK05335	436	tRNA (uracil-5-)-methyltransferase Gid; Reviewed	90.73
PRK08589	272	short chain dehydrogenase; Validated	90.72
PRK08945	247	putative oxoacyl-(acyl carrier protein) reductase;	90.72
PRK04663	438	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	90.72
PRK08125	660	bifunctional UDP-glucuronic acid decarboxylase/UDP	90.71
PRK12367	245	short chain dehydrogenase; Provisional	90.69
PRK06487	317	glycerate dehydrogenase; Provisional	90.67
PLN02740	381	Alcohol dehydrogenase-like	90.62
TIGR01832	248	kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod	90.61
PRK05650	270	short chain dehydrogenase; Provisional	90.58
PRK14806	735	bifunctional cyclohexadienyl dehydrogenase/ 3-phos	90.57
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	90.57
TIGR01850	346	argC N-acetyl-gamma-glutamyl-phosphate reductase,	90.54
PRK09291	257	short chain dehydrogenase; Provisional	90.53
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	90.51
TIGR01296	339	asd_B aspartate-semialdehyde dehydrogenase (peptid	90.5
PRK05653	246	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	90.49
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	90.47
PRK08306	296	dipicolinate synthase subunit A; Reviewed	90.44
cd05297	423	GH4_alpha_glucosidase_galactosidase Glycoside Hydr	90.43
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	90.43
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	90.4
PRK10217	355	dTDP-glucose 4,6-dehydratase; Provisional	90.4
PRK08085	254	gluconate 5-dehydrogenase; Provisional	90.38
PRK07589	346	ornithine cyclodeaminase; Validated	90.38
PRK08818	370	prephenate dehydrogenase; Provisional	90.37
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	90.37
PRK06113	255	7-alpha-hydroxysteroid dehydrogenase; Validated	90.33
PLN02253	280	xanthoxin dehydrogenase	90.32
TIGR01082	448	murC UDP-N-acetylmuramate--alanine ligase. UDP-N-a	90.29
PRK09987	299	dTDP-4-dehydrorhamnose reductase; Provisional	90.27
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	90.27
PRK06270	341	homoserine dehydrogenase; Provisional	90.22
PRK12827	249	short chain dehydrogenase; Provisional	90.22
PF02423	313	OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst	90.22
PRK05876	275	short chain dehydrogenase; Provisional	90.2
PRK07109	334	short chain dehydrogenase; Provisional	90.12
PLN02695	370	GDP-D-mannose-3',5'-epimerase	90.11
PRK12814	652	putative NADPH-dependent glutamate synthase small	90.11
PLN02572	442	UDP-sulfoquinovose synthase	90.1
PRK08643	256	acetoin reductase; Validated	90.08
PRK05855	582	short chain dehydrogenase; Validated	90.02
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	89.91
PTZ00317	559	NADP-dependent malic enzyme; Provisional	89.88
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	89.85
PF04321	286	RmlD_sub_bind: RmlD substrate binding domain; Inte	89.84
PLN02650	351	dihydroflavonol-4-reductase	89.78
PLN02383	344	aspartate semialdehyde dehydrogenase	89.78
PRK03806	438	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	89.77
PLN02653	340	GDP-mannose 4,6-dehydratase	89.73
PRK01581	374	speE spermidine synthase; Validated	89.7
COG0345	266	ProC Pyrroline-5-carboxylate reductase [Amino acid	89.69
PRK09126	392	hypothetical protein; Provisional	89.68
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	89.66
PF01370	236	Epimerase: NAD dependent epimerase/dehydratase fam	89.66
PRK06523	260	short chain dehydrogenase; Provisional	89.61
PRK11150	308	rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Pro	89.59
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	89.59
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	89.51
PRK14031	444	glutamate dehydrogenase; Provisional	89.5
cd05313	254	NAD_bind_2_Glu_DH NAD(P) binding domain of glutama	89.48
PRK08703	239	short chain dehydrogenase; Provisional	89.47
PRK06196	315	oxidoreductase; Provisional	89.45
PTZ00188	506	adrenodoxin reductase; Provisional	89.42
PRK06184	502	hypothetical protein; Provisional	89.41
PRK06124	256	gluconate 5-dehydrogenase; Provisional	89.37
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	89.36
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	89.36
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	89.22
PRK15076	431	alpha-galactosidase; Provisional	89.18
PRK12938	246	acetyacetyl-CoA reductase; Provisional	89.18
PRK07097	265	gluconate 5-dehydrogenase; Provisional	89.17
PRK07067	257	sorbitol dehydrogenase; Provisional	89.16
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	89.16
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	89.11
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	89.11
PRK08628	258	short chain dehydrogenase; Provisional	89.11
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	89.11
COG0362	473	Gnd 6-phosphogluconate dehydrogenase [Carbohydrate	89.1
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	89.09
TIGR01179	328	galE UDP-glucose-4-epimerase. This enzyme intercon	89.0
PRK06823	315	ornithine cyclodeaminase; Validated	89.0
PRK07890	258	short chain dehydrogenase; Provisional	88.96
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	88.95
PRK14874	334	aspartate-semialdehyde dehydrogenase; Provisional	88.94
PRK08862	227	short chain dehydrogenase; Provisional	88.94
PRK08013	400	oxidoreductase; Provisional	88.93
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	88.91
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	88.9
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	88.9
PRK06185	407	hypothetical protein; Provisional	88.88
PRK07904	253	short chain dehydrogenase; Provisional	88.86
TIGR03364	365	HpnW_proposed FAD dependent oxidoreductase TIGR033	88.82
PRK06947	248	glucose-1-dehydrogenase; Provisional	88.8
KOG0409	327	consensus Predicted dehydrogenase [General functio	88.75
PRK05872	296	short chain dehydrogenase; Provisional	88.71
TIGR00137	433	gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo	88.68
PLN02503	605	fatty acyl-CoA reductase 2	88.67
PF05368	233	NmrA: NmrA-like family; InterPro: IPR008030 NmrA i	88.64
PRK08324	681	short chain dehydrogenase; Validated	88.62
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	88.62
TIGR00715	256	precor6x_red precorrin-6x reductase. This enzyme w	88.61
PRK05671	336	aspartate-semialdehyde dehydrogenase; Reviewed	88.57
PRK12743	256	oxidoreductase; Provisional	88.56
PLN02823	336	spermine synthase	88.54
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	88.52
PRK07677	252	short chain dehydrogenase; Provisional	88.52
PLN02968	381	Probable N-acetyl-gamma-glutamyl-phosphate reducta	88.49
TIGR01746	367	Thioester-redct thioester reductase domain. It has	88.45
PRK08416	260	7-alpha-hydroxysteroid dehydrogenase; Provisional	88.43
PRK08264	238	short chain dehydrogenase; Validated	88.43
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	88.41
TIGR03466	328	HpnA hopanoid-associated sugar epimerase. The sequ	88.29
PRK07236	386	hypothetical protein; Provisional	88.28

>KOG2014 consensus SMT3/SUMO-activating complex, AOS1/RAD31 component [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.1e-68  Score=469.08  Aligned_cols=309  Identities=55%  Similarity=0.855  Sum_probs=288.3

Q ss_pred             CCCCCCCHHHHHHhHHHHHhhhHHHHHHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCC
Q 020565            1 MDGEELTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPD   80 (324)
Q Consensus         1 ~~~~~l~~~e~~ry~Rqi~l~g~~~q~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~   80 (324)
                      |.+.+||++|...||||||+||.++|++|+++||||+|.+|+|+|++|||+++||++++++|+..|++++++.|||+..+
T Consensus         1 m~~~else~E~alYDRQIRLWG~~AQ~~lr~s~VLlig~k~lgaEiaKnivLaGV~~ltlLD~~~Vt~Ed~~~qFli~~~   80 (331)
T KOG2014|consen    1 MKGEELSEQEIALYDRQIRLWGLEAQRRLRKSHVLLIGGKGLGAEIAKNIVLAGVGSLTLLDDRLVTEEDVGAQFLISAS   80 (331)
T ss_pred             CchhhhhHHHHHHHHHHHHHccHHHHHhhhhceEEEecCchHHHHHHHHhhhcccceeEEeeccccchhcCCceeEEchh
Confidence            78889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcccCCccHHHHHHHHHHhhCCCCeEeEeeCCCCCCchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEeeecC
Q 020565           81 ENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRD  160 (324)
Q Consensus        81 di~~~G~~ka~~~~~~l~~lnp~v~v~~~~~~~~~~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~~~~G  160 (324)
                      ++   |++||++..++++++||.|++.+..+++.+..+++|.+||+||.+..+.+....+|.+||+  .+|+|+.++++|
T Consensus        81 ~v---g~~raeas~erl~~LNPmV~v~~d~edl~ek~eeff~qFdlVV~~~~s~e~~~kvn~icrk--~~i~F~a~d~~g  155 (331)
T KOG2014|consen   81 SV---GQTRAEASLERLQDLNPMVDVSVDKEDLSEKDEEFFTQFDLVVATDQSREEKCKVNEICRK--LNIAFYAGDCFG  155 (331)
T ss_pred             hh---chHHHHHHHHHHHhcCCceEEEechhhhhhcchhhhhceeEEEEeccchhhhhhHHHHHHh--cCceEEeccccc
Confidence            99   9999999999999999999999999999999999999999999999999999999999999  999999999999


Q ss_pred             ceEEEEEecCceeeeecCc-----------------ccccccccCCCChHHhhccCcc----cCCCchhHHHHHHHHHHH
Q 020565          161 SCGEIFVDLQNHKYSKQKI-----------------EETIECQLRYPSFEEAISVPWR----ALPRKASKLYFALRVLEQ  219 (324)
Q Consensus       161 ~~g~v~~d~~~~~~~~~~~-----------------~~~~~~~~~f~~~~e~l~~~~~----~~~~~~~~~~~~~~~l~~  219 (324)
                      ++|+.|+|+++|.|...+.                 .+.+.+...|||+.|+++.+|.    ..++|..+.+++++++..
T Consensus       156 ~~Gy~F~dL~~h~y~~~~~~~~~~~~~k~~k~~~~~~~~vk~~~~~~~~~Eal~~~~~~k~k~~~rr~~~~~~ll~v~l~  235 (331)
T KOG2014|consen  156 LCGYAFADLQEHKYLEEKTKVAKVSQTKRAKVDETETEWVKRKVVFPSVKEALSVDWTKKEKRKPRRTKKLYFLLPVLLK  235 (331)
T ss_pred             eeeeeeeehhhhhhhhhcccccccccccceeeeeccceehhhhhcccCHHHHHhcccchhhhhhhhccCcceehHHHHHH
Confidence            9999999999999876521                 1124567899999999999993    456788899999999999


Q ss_pred             HHHHhCCCCCCCCcccHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHh-cCCcccchhHHHHHHHHHHHHHHHhcCCCcc
Q 020565          220 FEEAEGRSPGEISIADLPAVLKLKKELCEANALNASHVTDSLLERLII-GTREFTPVCAVVGGILGQEVIKAISCKGEPL  298 (324)
Q Consensus       220 f~~~~~~~p~~~~~~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~l~p~~av~Ggi~aqEviK~itg~~~pl  298 (324)
                      |.+.+++.|+.-+.+|++.++.+.++++...    ..++++++ ++.. ..++++|+||++||++||||||+||++..|+
T Consensus       236 f~~s~~r~pg~~~~~d~erl~~I~~ell~s~----~i~pd~~~-~f~~~~~~ef~Pv~AvVGGivaQevIk~isk~~~Pl  310 (331)
T KOG2014|consen  236 FRTSEGRDPGETSEEDLERLLQIRNELLESE----TIIPDELL-EFLSLIFTEFAPVCAVVGGILAQEVIKAISKKGPPL  310 (331)
T ss_pred             HHHhcCCCCccccHHHHHHHHHHHHhhcccc----ccCCchHH-HHHHhcccccCchhhhhhhHhHHHHHHHhhcCCCcc
Confidence            9999999999777899999999999998843    44677777 7777 9999999999999999999999999999999


Q ss_pred             cceEEEeccCCceeEEecCCC
Q 020565          299 KNFFFFDIMDGKGVVEDVSSP  319 (324)
Q Consensus       299 ~~~~~~D~~~~~~~~~~~~~~  319 (324)
                      +|+|+||+.++.+.+++++|+
T Consensus       311 ~Nff~fdg~~g~g~ie~l~~~  331 (331)
T KOG2014|consen  311 NNFFIFDGETGKGPIEDLGPK  331 (331)
T ss_pred             cceEEeecccCceehhhcCCC
Confidence            999999999999999999984

>TIGR01408 Ube1 ubiquitin-activating enzyme E1

Probab=100.00  E-value=2.2e-59  Score=484.18  Aligned_cols=293  Identities=32%  Similarity=0.505  Sum_probs=268.4

Q ss_pred             HHHHhHHHHHhhhHHHHHHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccH
Q 020565           10 ETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTI   89 (324)
Q Consensus        10 e~~ry~Rqi~l~g~~~q~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~k   89 (324)
                      +.++||||+++||.++|++|++++|||+||||+|+|+||||+++|||+|+|+|+|.|+.+||+||||++++||   |++|
T Consensus         3 d~~lYsRQi~l~G~eaq~kL~~s~VLIiG~gGLG~EiaKnL~laGVg~iti~D~d~v~~sdL~rQf~~~~~dI---Gk~K   79 (1008)
T TIGR01408         3 DEALYSRQLYVLGDEAMQKMAKSNVLISGMGGLGLEIAKNLVLAGVKSVTLHDTEKCQAWDLSSNFFLSEDDV---GRNR   79 (1008)
T ss_pred             hHhhhhhHHHhcCHHHHHHHhhCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCeecHhhCCCceecchHHc---CchH
Confidence            5689999999999999999999999999999999999999999999999999999999999999999999999   9999


Q ss_pred             HHHHHHHHHhhCCCCeEeEeeCCCCCCchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCC--ccEEEeeecCceEEEEE
Q 020565           90 AEVCCDSLKDFNPMVRVSVEKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKR--VAFYTVDCRDSCGEIFV  167 (324)
Q Consensus        90 a~~~~~~l~~lnp~v~v~~~~~~~~~~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~--ip~i~~~~~G~~g~v~~  167 (324)
                      |++++++|+++||+|+|+++...++   .+++++||+||+|.++.+.+..+|++||+  ++  ||||++++.|++|++|+
T Consensus        80 aea~~~~L~eLNp~V~V~~~~~~l~---~e~l~~fdvVV~t~~~~~~~~~in~~cr~--~~~~I~fI~~~~~G~~G~vf~  154 (1008)
T TIGR01408        80 AEAVVKKLAELNPYVHVSSSSVPFN---EEFLDKFQCVVLTEMSLPLQKEINDFCHS--QCPPIAFISADVRGLFGSLFC  154 (1008)
T ss_pred             HHHHHHHHHHHCCCceEEEecccCC---HHHHcCCCEEEECCCCHHHHHHHHHHHHH--cCCCeEEEEEeecceEEEEEe
Confidence            9999999999999999999877654   57899999999999999999999999999  88  99999999999999999


Q ss_pred             ecCc-eeeeecCccc-----------------------------------------------------------------
Q 020565          168 DLQN-HKYSKQKIEE-----------------------------------------------------------------  181 (324)
Q Consensus       168 d~~~-~~~~~~~~~~-----------------------------------------------------------------  181 (324)
                      |||+ |.+.++++++                                                                 
T Consensus       155 D~g~~f~~~d~~ge~p~~~~i~~i~~~~~g~Vt~~~~~~h~l~~gd~V~f~ev~gm~~lN~~~~~~i~~~~~~~f~i~dt  234 (1008)
T TIGR01408       155 DFGDEFEVLDTDGEEPKTGFIASITQANPGIVTCLENHRHKLETGDFVTFREVNGMTGLNDGSPRKITVISPYSFSIGDT  234 (1008)
T ss_pred             cCCCceEEEeCCCCCCCcccccccccCCCceEEeecCcccCCcCCCEEEEeecccccccCCCCceeEEecCCceEEeccc
Confidence            9996 6666543210                                                                 


Q ss_pred             ---------------ccccccCCCChHHhhccC------cccCCCchhHHHHHHHHHHHHHHHhCCCCCCCCcccHHHHH
Q 020565          182 ---------------TIECQLRYPSFEEAISVP------WRALPRKASKLYFALRVLEQFEEAEGRSPGEISIADLPAVL  240 (324)
Q Consensus       182 ---------------~~~~~~~f~~~~e~l~~~------~~~~~~~~~~~~~~~~~l~~f~~~~~~~p~~~~~~d~~~~~  240 (324)
                                     +.|..+.|.++++++..|      |.++ .+.+.+|+++++|++|.+.|+++|.+++.+|+++++
T Consensus       235 ~~~~~y~~gG~~~qvK~p~~~~Fksl~~~l~~p~~~~~d~~k~-~r~~~lh~~~~aL~~f~~~~g~~P~~~~~~d~~~~~  313 (1008)
T TIGR01408       235 TELGPYLHGGIATQVKTPKTVFFKSLREQLKDPKCLIVDFSKP-ERPPEIHTAFQALDQFQEKYSRKPNVGCQQDAEELL  313 (1008)
T ss_pred             cccchhhcCceEEEEeccccccccCHHHHHcCCcccccchhhc-CCchhHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHH
Confidence                           124456789999999887      5554 377789999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCCCCCCHHHHHHHHh-cCCcccchhHHHHHHHHHHHHHHHhcCCCcccceEEEeccCCce
Q 020565          241 KLKKELCEANALNASHVTDSLLERLII-GTREFTPVCAVVGGILGQEVIKAISCKGEPLKNFFFFDIMDGKG  311 (324)
Q Consensus       241 ~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~l~p~~av~Ggi~aqEviK~itg~~~pl~~~~~~D~~~~~~  311 (324)
                      ++++++++..+.+.+.+++++++.+++ +.++++|++|++||++||||||++||+|.|++||++||+.++-.
T Consensus       314 ~~a~~i~~~~~~~~~~lde~li~~~~~~~~geisPv~Ai~GGi~aQEViKaisgKf~Pi~q~~~~D~~e~l~  385 (1008)
T TIGR01408       314 KLATSISETLEEKVPDVDAKLVHWLSWTAQGFLSPMAAAVGGVVSQEVLKAVTGKFSPLCQWFYFDSAESLP  385 (1008)
T ss_pred             HHHHHHHHhcCCCcccCCHHHHHHHHHhccccccHHHHHhchHHHHHHHHHhcCCCCCceeeEEeehhhhCC
Confidence            999999998887777799999999999 99999999999999999999999999999999999999988753

This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.

>KOG2012 consensus Ubiquitin activating enzyme UBA1 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.2e-58  Score=450.02  Aligned_cols=295  Identities=32%  Similarity=0.525  Sum_probs=273.4

Q ss_pred             HHHHHHhHHHHHhhhHHHHHHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCc
Q 020565            8 EQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGK   87 (324)
Q Consensus         8 ~~e~~ry~Rqi~l~g~~~q~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~   87 (324)
                      +.+...|+||+++.|.+++++|..++|||.|++|+|.||||||+++||+++||.|+..+..+||+.||+++++||   |+
T Consensus        14 ~IDE~LYSRQLYVlG~eAM~~m~~S~VLisGl~GLGvEIAKNliLaGVksvTlhD~~~~~~~DLssqf~L~E~Di---gk   90 (1013)
T KOG2012|consen   14 EIDESLYSRQLYVLGHEAMRRMQGSNVLISGLQGLGVEIAKNLILAGVKSVTLHDPRPVQLSDLSSQFYLSEEDI---GK   90 (1013)
T ss_pred             hhhhhhhhhhhhhccHHHHHHHhhCcEEEecCCcccHHHHhhHhhhccceEEeeCCCcccHHhhccceeeeHHhc---CC
Confidence            556789999999999999999999999999999999999999999999999999999999999999999999999   99


Q ss_pred             cHHHHHHHHHHhhCCCCeEeEeeCCCCCCchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEeeecCceEEEEE
Q 020565           88 TIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFV  167 (324)
Q Consensus        88 ~ka~~~~~~l~~lnp~v~v~~~~~~~~~~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~~~~G~~g~v~~  167 (324)
                      +||++..++|.+||++|.|.+++..++   .+++++|++||.|..+.+....||++||+  ++|.||.+.+.|++|++||
T Consensus        91 nRA~as~~~LaeLN~yV~V~v~t~~~~---~e~L~~FqvVVlt~~~le~q~~i~~fch~--~~i~fi~ad~RGLfg~lFC  165 (1013)
T KOG2012|consen   91 NRAEASVEKLAELNNYVPVVVLTGPLT---EEFLSDFQVVVLTDASLEEQLKINDFCHS--HGIAFIAADTRGLFGQLFC  165 (1013)
T ss_pred             chHHHHHHHHHHhhcceeeEEecCccc---HHHHhCCcEEEEecCchHHHHHHHHHHHh--cCeEEEEeccchhhhhhhc
Confidence            999999999999999999999877654   78999999999999999999999999999  9999999999999999999


Q ss_pred             ecC-ceeeeecCccc-----------------------------------------------------------------
Q 020565          168 DLQ-NHKYSKQKIEE-----------------------------------------------------------------  181 (324)
Q Consensus       168 d~~-~~~~~~~~~~~-----------------------------------------------------------------  181 (324)
                      ||| +|++.+.++++                                                                 
T Consensus       166 DFG~eF~v~D~tGeeP~t~mI~~Is~d~pGvvT~ld~~rH~lEdGd~V~FsEveGm~eLN~~~P~kI~v~~p~sf~Igdt  245 (1013)
T KOG2012|consen  166 DFGEEFTVLDPTGEEPLTGMIASISQDNPGVVTCLDGARHGFEDGDLVTFSEVEGMTELNDCKPRKITVLGPYSFSIGDT  245 (1013)
T ss_pred             cCCCceEEeCCCCCcchhhHHhhccCCCCceEEEecCccccCccCCEEEEEeeccccccCCCCceEEEEecCceEEeccc
Confidence            999 78877766542                                                                 


Q ss_pred             ---------------ccccccCCCChHHhhccC----ccc-CCCchhHHHHHHHHHHHHHHHhCCCCCCCCcccHHHHHH
Q 020565          182 ---------------TIECQLRYPSFEEAISVP----WRA-LPRKASKLYFALRVLEQFEEAEGRSPGEISIADLPAVLK  241 (324)
Q Consensus       182 ---------------~~~~~~~f~~~~e~l~~~----~~~-~~~~~~~~~~~~~~l~~f~~~~~~~p~~~~~~d~~~~~~  241 (324)
                                     +.|++++|.|+++++..|    |.. -..|++.+|.+|+||++|.++||++|.+++++|+++|++
T Consensus       246 ~~f~~y~~GGi~tQVK~Pk~isfKsL~~~L~~P~fl~~df~k~~rp~~lH~af~AL~~F~~~~Gr~P~p~~e~DA~~l~~  325 (1013)
T KOG2012|consen  246 TEFGEYKKGGIFTQVKVPKTISFKSLREALKEPEFLISDFAKFDRPPQLHLAFQALHQFQEAHGRLPRPGNEEDAEELVE  325 (1013)
T ss_pred             cchhhhhcCceeEEeecCceEecccHHHhhcCCCeeeeccccccccHHHHHHHHHHHHHHHHhCCCCCCCChhhHHHHHH
Confidence                           467788999999999887    111 125788999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCCCCCCCHHHHHHHHh-cCCcccchhHHHHHHHHHHHHHHHhcCCCcccceEEEeccCCce
Q 020565          242 LKKELCEANALNASHVTDSLLERLII-GTREFTPVCAVVGGILGQEVIKAISCKGEPLKNFFFFDIMDGKG  311 (324)
Q Consensus       242 ~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~l~p~~av~Ggi~aqEviK~itg~~~pl~~~~~~D~~~~~~  311 (324)
                      ++..+.+..+ ....+++++++.++. +++.+.||+|++||++||||+|++|||++||.||||||+.++--
T Consensus       326 l~~~i~~~~~-~~~~vde~Lir~~s~~a~g~L~pm~A~~GG~vaQEvlKa~sgKF~PL~Q~lYfDale~LP  395 (1013)
T KOG2012|consen  326 LARDISEGLG-LEEDVDEKLIRHFSFSARGDLNPMVAFFGGIVAQEVLKACSGKFTPLKQWLYFDALESLP  395 (1013)
T ss_pred             HHHHhhhhcc-ccccchHHHHHHHHHhhccCcchHHHHHhhhhHHHHHHhhccCccchhHheehhhHhhCC
Confidence            9999988777 467899999999999 99999999999999999999999999999999999999988753

>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1

Probab=100.00  E-value=2.6e-56  Score=425.14  Aligned_cols=298  Identities=27%  Similarity=0.414  Sum_probs=251.6

Q ss_pred             HHhHHHHHhhhHHHHHHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHH
Q 020565           12 ALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAE   91 (324)
Q Consensus        12 ~ry~Rqi~l~g~~~q~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~   91 (324)
                      .|||||+|+||.+||++|++++|+|+|+||+|+|++|||+++|||+|||+|++.|+.+|+++|||++.+|+   |++||+
T Consensus         1 ~rYDRQlrLwG~~gQ~~L~~s~VlliG~gglGsEilKNLvL~GIg~~tIvD~~~V~~sDL~~nFfl~~~di---Gk~kA~   77 (425)
T cd01493           1 QKYDRQLRLWGEHGQAALESAHVCLLNATATGTEILKNLVLPGIGSFTIVDGSKVDEEDLGNNFFLDASSL---GKSRAE   77 (425)
T ss_pred             CcchHHHHHhHHHHHHHHhhCeEEEEcCcHHHHHHHHHHHHcCCCeEEEECCCcCchhhccccccCChhhc---CcHHHH
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999   999999


Q ss_pred             HHHHHHHhhCCCCeEeEeeCCCCC---CchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEeeecCceEEEEEe
Q 020565           92 VCCDSLKDFNPMVRVSVEKGDLSS---LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFVD  168 (324)
Q Consensus        92 ~~~~~l~~lnp~v~v~~~~~~~~~---~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~~~~G~~g~v~~d  168 (324)
                      +++++|+++||+|+++.+...+++   ...+++++||+||+|.++......++++|++  +++|+|.+++.|++|+++++
T Consensus        78 ~~~~~L~eLNp~V~i~~~~e~~~~ll~~~~~f~~~fdiVI~t~~~~~~~~~L~~~c~~--~~iPlI~~~s~G~~G~v~v~  155 (425)
T cd01493          78 ATCELLQELNPDVNGSAVEESPEALLDNDPSFFSQFTVVIATNLPESTLLRLADVLWS--ANIPLLYVRSYGLYGYIRIQ  155 (425)
T ss_pred             HHHHHHHHHCCCCEEEEEecccchhhhhHHHHhcCCCEEEECCCCHHHHHHHHHHHHH--cCCCEEEEecccCEEEEEEE
Confidence            999999999999999998877654   3468899999999999999999999999999  99999999999999999999


Q ss_pred             cCceeeeecCccccc-----------------------------------------------------cc----------
Q 020565          169 LQNHKYSKQKIEETI-----------------------------------------------------EC----------  185 (324)
Q Consensus       169 ~~~~~~~~~~~~~~~-----------------------------------------------------~~----------  185 (324)
                      +++|.+.+.+++...                                                     |+          
T Consensus       156 ~~~h~i~et~p~~~~~DLRL~~P~peL~~~~~~~dl~~ld~~~h~hvPy~viL~~~l~~w~~~~~g~~p~~~~ek~~f~~  235 (425)
T cd01493         156 LKEHTIVESHPDNALEDLRLDNPFPELREHADSIDLDDMDPAEHSHTPYIVILIKYLEKWRSAHNGQLPSTYKEKKEFRD  235 (425)
T ss_pred             ECCeEEEECCCCCCCcCcccCCCcHHHHHHHHhcCCccCChhhcCCCCHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Confidence            999998887654200                                                     00          


Q ss_pred             --------ccCCCChHHhhccCccc-----CC----------------CchhHHHHHHHHHHHHHHH-hCCCCCCCC---
Q 020565          186 --------QLRYPSFEEAISVPWRA-----LP----------------RKASKLYFALRVLEQFEEA-EGRSPGEIS---  232 (324)
Q Consensus       186 --------~~~f~~~~e~l~~~~~~-----~~----------------~~~~~~~~~~~~l~~f~~~-~~~~p~~~~---  232 (324)
                              ....++|+||....|..     ++                ...+.+|++.+||.+|.++ +|.+|-+.+   
T Consensus       236 ~i~~~~~~~~~eeNf~EA~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~~~~~~fwi~~~alk~F~~~~~g~lPl~G~lPD  315 (425)
T cd01493         236 LVRSLMRSNEDEENFEEAIKAVNKALNRTKIPSSVEEIFNDDRCENLTSQSSSFWIMARALKEFVAEENGLLPLPGTLPD  315 (425)
T ss_pred             HHHHhcccCCCccchHHHHHHHHHhhCCCCCcHHHHHHHhchhcccCCCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCC
Confidence                    01123455555332211     11                1235688999999999887 887775443   


Q ss_pred             -------------------cccHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHh-c--------CCcccchhHHHHHHHH
Q 020565          233 -------------------IADLPAVLKLKKELCEANALNASHVTDSLLERLII-G--------TREFTPVCAVVGGILG  284 (324)
Q Consensus       233 -------------------~~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~--------~~~l~p~~av~Ggi~a  284 (324)
                                         ..|.+++.+..+++.+..|.+.+.|+++.++.||+ +        +.--+|++|++||++|
T Consensus       316 M~s~t~~Yi~Lq~iY~~ka~~D~~~v~~~v~~~~~~~g~~~~~I~~~~i~~FCkna~~l~~i~~~~~~~~~~~~~gg~~a  395 (425)
T cd01493         316 MTADTEKYIKLQNIYREKAEKDAAEVEKYVREILKSLGRSPDSISDKEIKLFCKNAAFLRVIRGRSLEHNISAFMGGIAA  395 (425)
T ss_pred             CccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhhHHhhhcccCCcccchHHHHHhHHHH
Confidence                               23666777777788888888888999999999997 4        2223899999999999


Q ss_pred             HHHHHHHhcCCCcccceEEEeccCCceeEE
Q 020565          285 QEVIKAISCKGEPLKNFFFFDIMDGKGVVE  314 (324)
Q Consensus       285 qEviK~itg~~~pl~~~~~~D~~~~~~~~~  314 (324)
                      ||+||+||+||.|++|+|+|||.++++.++
T Consensus       396 qE~iK~~t~q~vp~~n~~i~dg~~~~s~~~  425 (425)
T cd01493         396 QEVIKLITKQYVPIDNTFIFDGIRSKSATF  425 (425)
T ss_pred             HHHHHHHhccccccCCceEEeccccceecC
Confidence            999999999999999999999999987653

APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.

>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1

Probab=100.00  E-value=4.9e-53  Score=382.83  Aligned_cols=263  Identities=31%  Similarity=0.477  Sum_probs=195.3

Q ss_pred             HhHHHHHhhhHHHHHHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHH
Q 020565           13 LYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEV   92 (324)
Q Consensus        13 ry~Rqi~l~g~~~q~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~   92 (324)
                      +||||+++||.++|++|++++|+|+|+||+|+|+||||+++||++|+|+|+|.++.+||+|||+++++|+   |++|+++
T Consensus         1 lYsRQl~~~G~eaq~kL~~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~ve~snL~rqf~~~~~dI---Gk~Kaea   77 (286)
T cd01491           1 LYSRQLYVLGHEAMKKLQKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKPCSWSDLSSQFYLREEDI---GKNRAEA   77 (286)
T ss_pred             CcccceeccCHHHHHHHhcCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCccchhhcccCccCChHHh---CHHHHHH
Confidence            5999999999999999999999999999999999999999999999999999999999999999999999   9999999


Q ss_pred             HHHHHHhhCCCCeEeEeeCCCCCCchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEeeecCceEEEEEecCc-
Q 020565           93 CCDSLKDFNPMVRVSVEKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFVDLQN-  171 (324)
Q Consensus        93 ~~~~l~~lnp~v~v~~~~~~~~~~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~~~~G~~g~v~~d~~~-  171 (324)
                      ++++|+++||+++++++...+   ..+++++||+||+|.++.+.+.++|++||+  +++|||.+++.|++|++|+|+|+ 
T Consensus        78 ~~~~L~eLNp~V~V~~~~~~~---~~~~l~~fdvVV~~~~~~~~~~~in~~c~~--~~ipfI~a~~~G~~G~vf~dfg~~  152 (286)
T cd01491          78 SQARLAELNPYVPVTVSTGPL---TTDELLKFQVVVLTDASLEDQLKINEFCHS--PGIKFISADTRGLFGSIFCDFGDE  152 (286)
T ss_pred             HHHHHHHHCCCCEEEEEeccC---CHHHHhcCCEEEEecCCHHHHHHHHHHHHH--cCCEEEEEeccccEEEEEecCCCe
Confidence            999999999999999987663   357889999999999999999999999999  99999999999999999999994 


Q ss_pred             eeeeecCcccccccc---cC-------------CCChHHhhccCcccCCCchhHHHHHHHHHHH--HHHHhCCCCCCCCc
Q 020565          172 HKYSKQKIEETIECQ---LR-------------YPSFEEAISVPWRALPRKASKLYFALRVLEQ--FEEAEGRSPGEISI  233 (324)
Q Consensus       172 ~~~~~~~~~~~~~~~---~~-------------f~~~~e~l~~~~~~~~~~~~~~~~~~~~l~~--f~~~~~~~p~~~~~  233 (324)
                      |.+.+.+++++..|.   +.             -..+++.--..+....        -|-.|..  ..+..-.-|...+.
T Consensus       153 f~~~d~~ge~p~~~~i~~I~~~~~g~V~~~~~~~h~l~~gd~V~f~ev~--------gm~~lN~~~~~~v~~~~~~~f~i  224 (286)
T cd01491         153 FTVYDPNGEEPKSGMISSISKDNPGVVTCLDETRHGFEDGDYVTFSEVE--------GMTELNGCEPRKIKVKGPYTFSI  224 (286)
T ss_pred             EEEeCCCCCcCCccceeeeecCCceEEEEECCcccCCcCCCEEEEeccC--------cchhhCCCccEEEEECCCCeEEE
Confidence            566655544322210   00             0001000000010000        0000000  00000011111111


Q ss_pred             ccHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhcCCcccchhHHHHHHHHHHHHHHHhcCCCcccceEEEeccCCc
Q 020565          234 ADLPAVLKLKKELCEANALNASHVTDSLLERLIIGTREFTPVCAVVGGILGQEVIKAISCKGEPLKNFFFFDIMDGK  310 (324)
Q Consensus       234 ~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~p~~av~Ggi~aqEviK~itg~~~pl~~~~~~D~~~~~  310 (324)
                      .|...+-+     ..+.|+             + ...-++|++|++||++||||+|++||+|.|++|||+||+.++-
T Consensus       225 ~d~~~~~~-----y~~gG~-------------~-~qvK~~~~~~~~g~~~~q~~~~~~~~~~~p~~q~~~~~~~~~l  282 (286)
T cd01491         225 GDTSSFSE-----YIRGGI-------------V-TQVKLSPMAAFFGGLAAQEVLKACSGKFTPLKQWLYFDALECL  282 (286)
T ss_pred             CcCcCcCc-----cccCcE-------------E-EEEecccHHHHhhhHHHHHHHHHcCCCCCceeeEEEecHHHhc
Confidence            12111100     001111             0 1112999999999999999999999999999999999998653

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=100.00  E-value=5e-50  Score=347.76  Aligned_cols=196  Identities=49%  Similarity=0.789  Sum_probs=186.4

Q ss_pred             HHhHHHHHhhhHHHHHHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHH
Q 020565           12 ALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAE   91 (324)
Q Consensus        12 ~ry~Rqi~l~g~~~q~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~   91 (324)
                      +|||||+++||.++|++|++++|+|+|+||+|+|++|||+++||++|+++|+|.++.+|++||||++++|+   |++|++
T Consensus         2 ~~Y~Rqi~l~G~e~Q~~L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~di---G~~Ka~   78 (197)
T cd01492           2 ALYDRQIRLWGLEAQKRLRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDL---GQNRAE   78 (197)
T ss_pred             chhhHHHHHhCHHHHHHHHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHc---CchHHH
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999   999999


Q ss_pred             HHHHHHHhhCCCCeEeEeeCCCCCCchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEeeecCceEEEEEecCc
Q 020565           92 VCCDSLKDFNPMVRVSVEKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFVDLQN  171 (324)
Q Consensus        92 ~~~~~l~~lnp~v~v~~~~~~~~~~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~~~~G~~g~v~~d~~~  171 (324)
                      +++++|+++||+++++.+...+++...++++++|+||+|.++.+.+.++|++|++  +++|||++++.|++|++|+|+  
T Consensus        79 a~~~~L~~lNp~v~i~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~ln~~c~~--~~ip~i~~~~~G~~G~v~~d~--  154 (197)
T cd01492          79 ASLERLRALNPRVKVSVDTDDISEKPEEFFSQFDVVVATELSRAELVKINELCRK--LGVKFYATGVHGLFGFVFADL--  154 (197)
T ss_pred             HHHHHHHHHCCCCEEEEEecCccccHHHHHhCCCEEEECCCCHHHHHHHHHHHHH--cCCCEEEEEecCCEEEEEEec--
Confidence            9999999999999999998888766778899999999999999999999999999  999999999999999998421  


Q ss_pred             eeeeecCcccccccccCCCChHHhhccCcccCCCchhHHHHHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHHHHHcC
Q 020565          172 HKYSKQKIEETIECQLRYPSFEEAISVPWRALPRKASKLYFALRVLEQFEEAEGRSPGEISIADLPAVLKLKKELCEANA  251 (324)
Q Consensus       172 ~~~~~~~~~~~~~~~~~f~~~~e~l~~~~~~~~~~~~~~~~~~~~l~~f~~~~~~~p~~~~~~d~~~~~~~~~~~~~~~~  251 (324)
                                                                                                      
T Consensus       155 --------------------------------------------------------------------------------  154 (197)
T cd01492         155 --------------------------------------------------------------------------------  154 (197)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCHHHHHHHHhcCCcccchhHHHHHHHHHHHHHHHhcCCCcccceEEEeccCCceeEE
Q 020565          252 LNASHVTDSLLERLIIGTREFTPVCAVVGGILGQEVIKAISCKGEPLKNFFFFDIMDGKGVVE  314 (324)
Q Consensus       252 ~~~~~v~~~~~~~~~~~~~~l~p~~av~Ggi~aqEviK~itg~~~pl~~~~~~D~~~~~~~~~  314 (324)
                                          ++|+++++|+++++|++|+++|+++|+.+++.||..+++++++
T Consensus       155 --------------------~~p~~~~~~~~~~~e~~k~~~~~~~~l~~~~~~d~~~~~~~~~  197 (197)
T cd01492         155 --------------------LAPVAAVVGGILAQDVINALSKRESPLNNFFVFDGETSEAPIY  197 (197)
T ss_pred             --------------------cccHHHHHHHHHHHHHHHHHhCCCCccCcEEEEECCCCcCccC
Confidence                                6788999999999999999999999998999999999988764

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>KOG2016 consensus NEDD8-activating complex, APP-BP1/UBA5 component [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.3e-49  Score=363.31  Aligned_cols=304  Identities=27%  Similarity=0.422  Sum_probs=261.1

Q ss_pred             HHHHHHhHHHHHhhhHHHHHHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCc
Q 020565            8 EQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGK   87 (324)
Q Consensus         8 ~~e~~ry~Rqi~l~g~~~q~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~   87 (324)
                      .+...+||||+|+||.+||..|..++|+++|||++|+|++|||++.|||+||++|...|+.+|++.|||...+++   |+
T Consensus         4 ~~~~~kYDRQlRlwge~gQ~~le~a~vCll~~~~~g~e~lKnLvl~Gigs~tvvd~~~v~~~d~g~nF~~~~~~~---Gk   80 (523)
T KOG2016|consen    4 SEPKTKYDRQLRLWGEEGQAALESASVCLLNATPLGSEALKNLVLPGIGSFTVVDGSKVEQGDLGNNFFLDAKSI---GK   80 (523)
T ss_pred             cchhhHHHHHHHHHHHHhHhhhhhceEEEecCChhHHHHHHhhcccccccEEEEecceeeecchhhHHHHHHHhh---ch
Confidence            345689999999999999999999999999999999999999999999999999999999999999999999999   99


Q ss_pred             cHHHHHHHHHHhhCCCCeEeEeeCCCCC---CchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEeeecCceEE
Q 020565           88 TIAEVCCDSLKDFNPMVRVSVEKGDLSS---LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGE  164 (324)
Q Consensus        88 ~ka~~~~~~l~~lnp~v~v~~~~~~~~~---~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~~~~G~~g~  164 (324)
                      +||++..+.|+++||.|.-+......+.   ...+++++|++||.+..+.+...++.++||.  .++|++.+.++|+.|+
T Consensus        81 srA~a~~e~LqeLN~~V~~~~vee~p~~Li~~~p~ff~qFtvViatnl~E~~~~kl~~~l~~--~~vpll~~rs~Gl~G~  158 (523)
T KOG2016|consen   81 SRAEATLEFLQELNPSVSGSFVEESPDFLIDNDPSFFSQFTVVIATNLNEQTLLKLAEILRE--ANVPLLLTRSYGLAGT  158 (523)
T ss_pred             hHHHHHHHHHHHhChhhhcCccccChhhhhhcCchhhheeeeeeccccchhhhhhhHHHHHh--cCCceEEEeeecceEE
Confidence            9999999999999999998887766553   4578899999999999999999999999999  9999999999999999


Q ss_pred             EEEecCceeeeecCccccc-------------------------------------------------------------
Q 020565          165 IFVDLQNHKYSKQKIEETI-------------------------------------------------------------  183 (324)
Q Consensus       165 v~~d~~~~~~~~~~~~~~~-------------------------------------------------------------  183 (324)
                      ++..+.+|++.+.+++.+.                                                             
T Consensus       159 iRI~ikEH~iieshPD~~~~DLRL~nPwpeLi~~v~s~dLd~m~~a~~shiPyivll~K~l~~w~~~~n~~~p~t~~ekk  238 (523)
T KOG2016|consen  159 IRISIKEHTIIESHPDNPLDDLRLDNPWPELIEYVDSTDLDVMDPAAHSHIPYIVLLVKYLEKWAKQHNGNLPSTYDEKK  238 (523)
T ss_pred             EEEEeeeccccccCCCCcccccccCCCcHHHHHHHhhcCccccchhhhcCCCcHHHHHHHHHHHHHhhcCCCCccHHHHH
Confidence            9999999988876654200                                                             


Q ss_pred             ---------ccccCCCChHHhhccCccc----------------------------------------------------
Q 020565          184 ---------ECQLRYPSFEEAISVPWRA----------------------------------------------------  202 (324)
Q Consensus       184 ---------~~~~~f~~~~e~l~~~~~~----------------------------------------------------  202 (324)
                               .-.+.-++++||....|..                                                    
T Consensus       239 ~fkd~i~~~~~~~DeeNyeEA~~a~~~Af~~~~i~ssv~dil~d~~c~~~~~~s~~FWim~~aLk~Fv~~e~~g~lPL~G  318 (523)
T KOG2016|consen  239 EFKDLIRSEMGKADEENYEEAIKAVNKAFAPTQIPSSVKDILHDDRCAQIGKDSSDFWIMAAALKEFVLKEEGGFLPLRG  318 (523)
T ss_pred             HHHHHHHhcCCCCccccHHHHHHHHHHHhcccCCchhHHHHhcChHHHHhcCCCcHHHHHHHHHHHHHcccCCCccCCCC
Confidence                     0011122333333222100                                                    


Q ss_pred             -CCC----------------------------------------------------------------------------
Q 020565          203 -LPR----------------------------------------------------------------------------  205 (324)
Q Consensus       203 -~~~----------------------------------------------------------------------------  205 (324)
                       +|.                                                                            
T Consensus       319 tlPDM~ssTe~YI~Lq~iY~eKA~~D~~~v~~~v~~vlk~lgr~~~sIs~~~ik~fCkna~~lkv~r~~~~~eey~~s~~  398 (523)
T KOG2016|consen  319 TLPDMTSSTEHYIRLQKIYHEKAEADALEVERRVQEVLKSLGRSPDSISDDVIKLFCKNAAKLKVCRGRTLAEEYEKSIT  398 (523)
T ss_pred             CCCccccCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhCCCccccCHHHHHHHHhhhhcceeeecchhhhhhcccch
Confidence             000                                                                            


Q ss_pred             ------------chhHHHHHHHHHHHHHHHhCCCCCCC-CcccHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHh-cCCc
Q 020565          206 ------------KASKLYFALRVLEQFEEAEGRSPGEI-SIADLPAVLKLKKELCEANALNASHVTDSLLERLII-GTRE  271 (324)
Q Consensus       206 ------------~~~~~~~~~~~l~~f~~~~~~~p~~~-~~~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~  271 (324)
                                  ....+++++|++++|.+.+|++|+.. ...|...+..++..+....|.....|.++.+.++|| ...+
T Consensus       399 ~~~~~~~~e~~~~~~~~~~~lRavdrfl~~~gk~pG~~~v~~D~~~lks~a~~~lse~g~~~~~v~d~~i~E~cR~gaaE  478 (523)
T KOG2016|consen  399 ELIKYSSNENYSNEIGFYLLLRAVDRFLKEKGKYPGEGPVEIDITKLKSIAASLLSELGLDGNAVTDDAIHEICRFGAAE  478 (523)
T ss_pred             hhhhhccccccchhHHHHHHHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHHHhccCcccCcHHHHHHHHhcCCch
Confidence                        00246789999999999999999843 257889999999999999999888999999999999 9999


Q ss_pred             ccchhHHHHHHHHHHHHHHHhcCCCcccceEEEeccCCceeEEec
Q 020565          272 FTPVCAVVGGILGQEVIKAISCKGEPLKNFFFFDIMDGKGVVEDV  316 (324)
Q Consensus       272 l~p~~av~Ggi~aqEviK~itg~~~pl~~~~~~D~~~~~~~~~~~  316 (324)
                      ++.++|++||++||||||+||.+|.|++|.|+|||.+.++..+.|
T Consensus       479 lH~VsAfiGGiaaQEvIKLiTkQyvPidNTFIfnGi~~~SaT~Kl  523 (523)
T KOG2016|consen  479 LHVVSAFIGGIAAQEVIKLITKQYVPIDNTFIFNGITQESATFKL  523 (523)
T ss_pred             hHHHHHHHhhHHHHHHHHHHHhceecccceeEecccccccceecC
Confidence            999999999999999999999999999999999999998877643

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=100.00  E-value=1.1e-48  Score=350.29  Aligned_cols=234  Identities=23%  Similarity=0.347  Sum_probs=202.4

Q ss_pred             CCCHHHHHHhHHHHHh--hhHHHHHHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCc
Q 020565            5 ELTEQETALYDRQIRV--WGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDEN   82 (324)
Q Consensus         5 ~l~~~e~~ry~Rqi~l--~g~~~q~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di   82 (324)
                      +||++|.+||+||+++  ||.++|++|++++|+|+|+||+|++++++|+++|||+|+|+|+|.|+.+||+||++++++|+
T Consensus         4 ~l~~~~~~rY~Rqi~l~~~g~~~Q~~L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dv   83 (245)
T PRK05690          4 ELSDEEMLRYNRQIILRGFDFDGQEKLKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATI   83 (245)
T ss_pred             CCCHHHHHHHHHhccchhcCHHHHHHhcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhC
Confidence            5899999999999988  99999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCccHHHHHHHHHHhhCCCCeEeEeeCCCCC-CchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEeeecCc
Q 020565           83 VYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSS-LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDS  161 (324)
Q Consensus        83 ~~~G~~ka~~~~~~l~~lnp~v~v~~~~~~~~~-~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~~~~G~  161 (324)
                         |++|+++++++|+++||+++++.+...+++ ...++++++|+||+|+|+++.+.++|++|++  +++|+|++++.|+
T Consensus        84 ---G~~Ka~~a~~~l~~lnp~v~i~~~~~~i~~~~~~~~~~~~DiVi~~~D~~~~r~~ln~~~~~--~~ip~v~~~~~g~  158 (245)
T PRK05690         84 ---GQPKVESARAALARINPHIAIETINARLDDDELAALIAGHDLVLDCTDNVATRNQLNRACFA--AKKPLVSGAAIRM  158 (245)
T ss_pred             ---CChHHHHHHHHHHHHCCCCEEEEEeccCCHHHHHHHHhcCCEEEecCCCHHHHHHHHHHHHH--hCCEEEEeeeccC
Confidence               999999999999999999999999888875 3467889999999999999999999999999  9999999999999


Q ss_pred             eEEEEEecCceeeeecCccccccc-ccCCCChHHhhccCcccCCCchhHHHHHHHHHHHHHHHhCCCCCCCCcccHHHHH
Q 020565          162 CGEIFVDLQNHKYSKQKIEETIEC-QLRYPSFEEAISVPWRALPRKASKLYFALRVLEQFEEAEGRSPGEISIADLPAVL  240 (324)
Q Consensus       162 ~g~v~~d~~~~~~~~~~~~~~~~~-~~~f~~~~e~l~~~~~~~~~~~~~~~~~~~~l~~f~~~~~~~p~~~~~~d~~~~~  240 (324)
                      .|++.+-.+.    .     ..+| +|.|+...+                                   .    .     
T Consensus       159 ~G~v~~~~~~----~-----~~~c~~c~~~~~~~-----------------------------------~----~-----  185 (245)
T PRK05690        159 EGQVTVFTYQ----D-----DEPCYRCLSRLFGE-----------------------------------N----A-----  185 (245)
T ss_pred             CceEEEEecC----C-----CCceeeeccCCCCC-----------------------------------C----C-----
Confidence            9998742210    0     1244 333332100                                   0    0     


Q ss_pred             HHHHHHHHHcCCCCCCCCHHHHHHHHhcCCcccchhHHHHHHHHHHHHHHHhcCCCcccc-eEEEeccCCceeEEecCCC
Q 020565          241 KLKKELCEANALNASHVTDSLLERLIIGTREFTPVCAVVGGILGQEVIKAISCKGEPLKN-FFFFDIMDGKGVVEDVSSP  319 (324)
Q Consensus       241 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~p~~av~Ggi~aqEviK~itg~~~pl~~-~~~~D~~~~~~~~~~~~~~  319 (324)
                          ..|...|+                   ++|+++++|+++|+|++|+|+|.+.|+.+ +++||..+++...+.+.+.
T Consensus       186 ----~~~~~~gv-------------------~~~~~~~~~~~~a~e~ik~l~g~~~~l~g~l~~~d~~~~~~~~~~~~~~  242 (245)
T PRK05690        186 ----LTCVEAGV-------------------MAPLVGVIGSLQAMEAIKLLTGYGEPLSGRLLLYDAMTMQFREMKLKRD  242 (245)
T ss_pred             ----CCcccCCc-------------------cchHHHHHHHHHHHHHHHHHhCCCCCCCCeEEEEECCCCEEEEEEcCCC
Confidence                01222333                   99999999999999999999999999876 9999999999988888654

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like

Probab=100.00  E-value=7.1e-48  Score=334.69  Aligned_cols=192  Identities=35%  Similarity=0.639  Sum_probs=180.6

Q ss_pred             HhHHHHHhhhHHHHHHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCC--CCcccCCccHH
Q 020565           13 LYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPP--DENVYGGKTIA   90 (324)
Q Consensus        13 ry~Rqi~l~g~~~q~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~--~di~~~G~~ka   90 (324)
                      +||||+++||.++|++|++++|+|+|+||+|+|++|||+++||++|+++|+|.++.+|++||||+++  +|+   |++|+
T Consensus         1 ~y~Rqi~l~G~~~q~~L~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~ve~snl~rq~~~~~~~~~i---G~~Ka   77 (198)
T cd01485           1 LYDRQIRLWGDEAQNKLRSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNS---GMNRA   77 (198)
T ss_pred             CccceeeccCHHHHHHHhhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCcCChhcCcccEecccchhhc---CchHH
Confidence            6999999999999999999999999999999999999999999999999999999999999999998  889   99999


Q ss_pred             HHHHHHHHhhCCCCeEeEeeCCCC---CCchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEeeecCceEEEEE
Q 020565           91 EVCCDSLKDFNPMVRVSVEKGDLS---SLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFV  167 (324)
Q Consensus        91 ~~~~~~l~~lnp~v~v~~~~~~~~---~~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~~~~G~~g~v~~  167 (324)
                      ++++++|+++||+++++.+...+.   +...++++++|+||+|.++...+.++|++|++  +++|+|.+++.|++|++|+
T Consensus        78 ~~~~~~L~~lNp~v~i~~~~~~~~~~~~~~~~~~~~~dvVi~~~d~~~~~~~ln~~c~~--~~ip~i~~~~~G~~G~v~~  155 (198)
T cd01485          78 AASYEFLQELNPNVKLSIVEEDSLSNDSNIEEYLQKFTLVIATEENYERTAKVNDVCRK--HHIPFISCATYGLIGYAFF  155 (198)
T ss_pred             HHHHHHHHHHCCCCEEEEEecccccchhhHHHHHhCCCEEEECCCCHHHHHHHHHHHHH--cCCCEEEEEeecCEEEEEE
Confidence            999999999999999999887764   34577899999999999999999999999999  9999999999999999984


Q ss_pred             ecCceeeeecCcccccccccCCCChHHhhccCcccCCCchhHHHHHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHHH
Q 020565          168 DLQNHKYSKQKIEETIECQLRYPSFEEAISVPWRALPRKASKLYFALRVLEQFEEAEGRSPGEISIADLPAVLKLKKELC  247 (324)
Q Consensus       168 d~~~~~~~~~~~~~~~~~~~~f~~~~e~l~~~~~~~~~~~~~~~~~~~~l~~f~~~~~~~p~~~~~~d~~~~~~~~~~~~  247 (324)
                      |                                                                               
T Consensus       156 ~-------------------------------------------------------------------------------  156 (198)
T cd01485         156 D-------------------------------------------------------------------------------  156 (198)
T ss_pred             c-------------------------------------------------------------------------------
Confidence            1                                                                               


Q ss_pred             HHcCCCCCCCCHHHHHHHHhcCCcccchhHHHHHHHHHHHHHHHhcCCCcccceEEEeccCCceeE
Q 020565          248 EANALNASHVTDSLLERLIIGTREFTPVCAVVGGILGQEVIKAISCKGEPLKNFFFFDIMDGKGVV  313 (324)
Q Consensus       248 ~~~~~~~~~v~~~~~~~~~~~~~~l~p~~av~Ggi~aqEviK~itg~~~pl~~~~~~D~~~~~~~~  313 (324)
                                              + |+++++|+++|+|++|+++|+++|+.++++||+.++++++
T Consensus       157 ------------------------~-p~~~~~~~~~~~e~~k~l~~~~~~~~~~~~~d~~~~~~~~  197 (198)
T cd01485         157 ------------------------F-PIAAFLGGVVAQEAIKSISGKFTPLNNLYIYDGFESTGPM  197 (198)
T ss_pred             ------------------------h-hHHHHHHHHHHHHHHHHHhCCCCccCcEEEEECccccCCC
Confidence                                    2 5689999999999999999999999889999999998864

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol

>PRK08328 hypothetical protein; Provisional

Probab=100.00  E-value=2.4e-47  Score=339.02  Aligned_cols=226  Identities=24%  Similarity=0.339  Sum_probs=195.5

Q ss_pred             CCHHHHHHhHHHHHhhhHHHHHHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccC
Q 020565            6 LTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYG   85 (324)
Q Consensus         6 l~~~e~~ry~Rqi~l~g~~~q~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~   85 (324)
                      ||+.|.+||+||+++||.++|++|++++|+|+||||+|++++++|+++|||+|+++|+|.++.+|++||+++.++|+   
T Consensus         2 l~~~~~~ry~Rq~~~~g~~~q~~L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dv---   78 (231)
T PRK08328          2 LSERELERYDRQIMIFGVEGQEKLKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTPELSNLNRQILHWEEDL---   78 (231)
T ss_pred             CCHHHHHHHhhHHHhcCHHHHHHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCccChhhhccccccChhhc---
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999   


Q ss_pred             Cc-cHHHHHHHHHHhhCCCCeEeEeeCCCCC-CchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEeeecCceE
Q 020565           86 GK-TIAEVCCDSLKDFNPMVRVSVEKGDLSS-LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCG  163 (324)
Q Consensus        86 G~-~ka~~~~~~l~~lnp~v~v~~~~~~~~~-~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~~~~G~~g  163 (324)
                      |+ +|+++++++|+++||+++++.+...+++ ...++++++|+||+|+|+++++..++++|++  +++|+|++++.|++|
T Consensus        79 G~~~k~~~a~~~l~~~np~v~v~~~~~~~~~~~~~~~l~~~D~Vid~~d~~~~r~~l~~~~~~--~~ip~i~g~~~g~~G  156 (231)
T PRK08328         79 GKNPKPLSAKWKLERFNSDIKIETFVGRLSEENIDEVLKGVDVIVDCLDNFETRYLLDDYAHK--KGIPLVHGAVEGTYG  156 (231)
T ss_pred             CchHHHHHHHHHHHHhCCCCEEEEEeccCCHHHHHHHHhcCCEEEECCCCHHHHHHHHHHHHH--cCCCEEEEeeccCEE
Confidence            99 5999999999999999999998887764 4466889999999999999999999999999  999999999999999


Q ss_pred             EEEEecCceeeeecCccccccc-ccCCCChHHhhccCcccCCCchhHHHHHHHHHHHHHHHhCCCCCCCCcccHHHHHHH
Q 020565          164 EIFVDLQNHKYSKQKIEETIEC-QLRYPSFEEAISVPWRALPRKASKLYFALRVLEQFEEAEGRSPGEISIADLPAVLKL  242 (324)
Q Consensus       164 ~v~~d~~~~~~~~~~~~~~~~~-~~~f~~~~e~l~~~~~~~~~~~~~~~~~~~~l~~f~~~~~~~p~~~~~~d~~~~~~~  242 (324)
                      ++.+..+..          .+| .+.||..                                   |.             
T Consensus       157 ~v~~~~p~~----------~~c~~~~~~~~-----------------------------------~~-------------  178 (231)
T PRK08328        157 QVTTIVPGK----------TKRLREIFPKV-----------------------------------KK-------------  178 (231)
T ss_pred             EEEEECCCC----------CCCHHHhCCCC-----------------------------------CC-------------
Confidence            998533210          122 1111110                                   00             


Q ss_pred             HHHHHHHcCCCCCCCCHHHHHHHHhcCCcccchhHHHHHHHHHHHHHHHhcCCCcccc-eEEEeccCCceeEEec
Q 020565          243 KKELCEANALNASHVTDSLLERLIIGTREFTPVCAVVGGILGQEVIKAISCKGEPLKN-FFFFDIMDGKGVVEDV  316 (324)
Q Consensus       243 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~p~~av~Ggi~aqEviK~itg~~~pl~~-~~~~D~~~~~~~~~~~  316 (324)
                         .+...                   +.++|+++++|+++|+|++|+|+|.++|+.+ +++||..+++..++.|
T Consensus       179 ---~~~~~-------------------~~~~~~~~ii~~~~a~e~~k~l~g~~~~~~~~l~~~d~~~~~~~~~~~  231 (231)
T PRK08328        179 ---KKGKF-------------------PILGATAGVIGSIQAMEVIKLITGYGEPLLNKLLIVDLANNVFEVVEL  231 (231)
T ss_pred             ---ccccC-------------------CcCchHHHHHHHHHHHHHHHHHhCCCCcccCeEEEEECCCCEEEEeeC
Confidence               00011                   2399999999999999999999999999976 8999999998877654

>PRK07411 hypothetical protein; Validated

Probab=100.00  E-value=6.5e-47  Score=359.87  Aligned_cols=235  Identities=21%  Similarity=0.262  Sum_probs=204.7

Q ss_pred             CCCCHHHHHHhHHHHHh--hhHHHHHHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCC
Q 020565            4 EELTEQETALYDRQIRV--WGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDE   81 (324)
Q Consensus         4 ~~l~~~e~~ry~Rqi~l--~g~~~q~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~d   81 (324)
                      ..||+.|.+||+||+++  ||.++|++|++++|+|+||||+|++++++|+++|||+|+|+|+|.|+.+||+||++++++|
T Consensus         9 ~~l~~~~~~ry~Rq~~l~~~g~~~q~~L~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~d   88 (390)
T PRK07411          9 IQLSKDEYERYSRHLILPEVGLEGQKRLKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNLQRQVIHGTSW   88 (390)
T ss_pred             ccCCHHHHHHhhceechhhcCHHHHHHHhcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEecccccCcCcccChHH
Confidence            46899999999999999  9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCccHHHHHHHHHHhhCCCCeEeEeeCCCCC-CchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEeeecC
Q 020565           82 NVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSS-LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRD  160 (324)
Q Consensus        82 i~~~G~~ka~~~~~~l~~lnp~v~v~~~~~~~~~-~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~~~~G  160 (324)
                      +   |++|+++++++|+++||.++|+.+...++. +..++++++|+||+|+|+++++..+|++|++  .++|+|++++.|
T Consensus        89 v---G~~Ka~~a~~~l~~~np~v~v~~~~~~~~~~~~~~~~~~~D~Vvd~~d~~~~r~~ln~~~~~--~~~p~v~~~~~g  163 (390)
T PRK07411         89 V---GKPKIESAKNRILEINPYCQVDLYETRLSSENALDILAPYDVVVDGTDNFPTRYLVNDACVL--LNKPNVYGSIFR  163 (390)
T ss_pred             C---CCcHHHHHHHHHHHHCCCCeEEEEecccCHHhHHHHHhCCCEEEECCCCHHHHHHHHHHHHH--cCCCEEEEEEcc
Confidence            9   999999999999999999999999988876 4567899999999999999999999999999  999999999999


Q ss_pred             ceEEEEEecCceeeeecCccccccc-ccCCCChHHhhccCcccCCCchhHHHHHHHHHHHHHHHhCCCCCCCCcccHHHH
Q 020565          161 SCGEIFVDLQNHKYSKQKIEETIEC-QLRYPSFEEAISVPWRALPRKASKLYFALRVLEQFEEAEGRSPGEISIADLPAV  239 (324)
Q Consensus       161 ~~g~v~~d~~~~~~~~~~~~~~~~~-~~~f~~~~e~l~~~~~~~~~~~~~~~~~~~~l~~f~~~~~~~p~~~~~~d~~~~  239 (324)
                      ++|++.+....          ..|| +|.||..                                   |..    +    
T Consensus       164 ~~g~~~v~~~~----------~~~c~~c~~~~~-----------------------------------~~~----~----  190 (390)
T PRK07411        164 FEGQATVFNYE----------GGPNYRDLYPEP-----------------------------------PPP----G----  190 (390)
T ss_pred             CEEEEEEECCC----------CCCChHHhcCCC-----------------------------------CCc----c----
Confidence            99998742110          1134 3333311                                   100    0    


Q ss_pred             HHHHHHHHHHcCCCCCCCCHHHHHHHHhcCCcccchhHHHHHHHHHHHHHHHhcCCCcccc-eEEEeccCCceeEEecCC
Q 020565          240 LKLKKELCEANALNASHVTDSLLERLIIGTREFTPVCAVVGGILGQEVIKAISCKGEPLKN-FFFFDIMDGKGVVEDVSS  318 (324)
Q Consensus       240 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~p~~av~Ggi~aqEviK~itg~~~pl~~-~~~~D~~~~~~~~~~~~~  318 (324)
                         ....|...|+                   ++|+++++|+++|+|+||+|+|.+.|+.+ +++||+.+++...+.+.+
T Consensus       191 ---~~~~c~~~gv-------------------lg~~~~~~g~~~a~eaik~l~g~~~~l~~~l~~~d~~~~~~~~~~~~~  248 (390)
T PRK07411        191 ---MVPSCAEGGV-------------------LGILPGIIGVIQATETIKIILGAGNTLSGRLLLYNALDMKFRELKLRP  248 (390)
T ss_pred             ---cCCCCccCCc-------------------CcchHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEECCCCceeEEeccC
Confidence               0012444455                   99999999999999999999999999876 999999999999999875

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=100.00  E-value=1.7e-46  Score=353.14  Aligned_cols=233  Identities=22%  Similarity=0.269  Sum_probs=200.7

Q ss_pred             CHHHHHHhHHHHHh--hhHHHHHHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCccc
Q 020565            7 TEQETALYDRQIRV--WGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVY   84 (324)
Q Consensus         7 ~~~e~~ry~Rqi~l--~g~~~q~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~   84 (324)
                      .++|.+||+||+++  ||.++|++|++++|+|+||||+||+++++|+++|||+|+|+|+|.|+.+||+||++++++|+  
T Consensus         2 ~~~~~~rY~Rq~~l~~~g~~~q~~L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~di--   79 (355)
T PRK05597          2 KNLDIARYRRQIMLGEIGQQGQQSLFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGV--   79 (355)
T ss_pred             ChHHHhHhhheechhhcCHHHHHHHhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHC--
Confidence            45778999999999  99999999999999999999999999999999999999999999999999999999999999  


Q ss_pred             CCccHHHHHHHHHHhhCCCCeEeEeeCCCCC-CchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEeeecCceE
Q 020565           85 GGKTIAEVCCDSLKDFNPMVRVSVEKGDLSS-LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCG  163 (324)
Q Consensus        85 ~G~~ka~~~~~~l~~lnp~v~v~~~~~~~~~-~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~~~~G~~g  163 (324)
                       |++|+++++++|+++||+++++.+...++. +..++++++|+||+|+|++.++..+|++|++  +++|||++++.|+.|
T Consensus        80 -G~~Ka~~a~~~l~~~np~v~v~~~~~~i~~~~~~~~~~~~DvVvd~~d~~~~r~~~n~~c~~--~~ip~v~~~~~g~~g  156 (355)
T PRK05597         80 -GQPKAESAREAMLALNPDVKVTVSVRRLTWSNALDELRDADVILDGSDNFDTRHLASWAAAR--LGIPHVWASILGFDA  156 (355)
T ss_pred             -CChHHHHHHHHHHHHCCCcEEEEEEeecCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHH--cCCCEEEEEEecCeE
Confidence             999999999999999999999999888875 4467889999999999999999999999999  999999999999999


Q ss_pred             EEEEecCceeeeecCccccccc-ccCCCChHHhhccCcccCCCchhHHHHHHHHHHHHHHHhCCCCCCCCcccHHHHHHH
Q 020565          164 EIFVDLQNHKYSKQKIEETIEC-QLRYPSFEEAISVPWRALPRKASKLYFALRVLEQFEEAEGRSPGEISIADLPAVLKL  242 (324)
Q Consensus       164 ~v~~d~~~~~~~~~~~~~~~~~-~~~f~~~~e~l~~~~~~~~~~~~~~~~~~~~l~~f~~~~~~~p~~~~~~d~~~~~~~  242 (324)
                      ++.+..+.          ..|| +|.||..                                   |..   .        
T Consensus       157 ~v~~~~~~----------~~~~~~~~~~~~-----------------------------------~~~---~--------  180 (355)
T PRK05597        157 QLSVFHAG----------HGPIYEDLFPTP-----------------------------------PPP---G--------  180 (355)
T ss_pred             EEEEEcCC----------CCCCHHHhCCCC-----------------------------------CCc---c--------
Confidence            99853211          0122 2222211                                   100   0        


Q ss_pred             HHHHHHHcCCCCCCCCHHHHHHHHhcCCcccchhHHHHHHHHHHHHHHHhcCCCcccc-eEEEeccCCceeEEecCCC
Q 020565          243 KKELCEANALNASHVTDSLLERLIIGTREFTPVCAVVGGILGQEVIKAISCKGEPLKN-FFFFDIMDGKGVVEDVSSP  319 (324)
Q Consensus       243 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~p~~av~Ggi~aqEviK~itg~~~pl~~-~~~~D~~~~~~~~~~~~~~  319 (324)
                      ....|...|+                   ++|+++++|+++|.|+||+|||.+.|+.+ +++||..+++...+.+...
T Consensus       181 ~~~~c~~~gv-------------------~g~~~~~~g~~~a~e~ik~l~g~~~~l~~~l~~~d~~~~~~~~~~~~~~  239 (355)
T PRK05597        181 SVPSCSQAGV-------------------LGPVVGVVGSAMAMEALKLITGVGTPLIGKLGYYDSLDGTWEYIPVVGN  239 (355)
T ss_pred             CCCCccccCc-------------------chhHHHHHHHHHHHHHHHHHhCCCCcCcCeEEEEECCCCeEEEEeccCC
Confidence            0012333444                   99999999999999999999999999987 9999999999999998753

>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated

Probab=100.00  E-value=2.1e-46  Score=357.14  Aligned_cols=238  Identities=25%  Similarity=0.379  Sum_probs=203.8

Q ss_pred             CCCHHHHHHhHHHHHh--hhHHHHHHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCc
Q 020565            5 ELTEQETALYDRQIRV--WGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDEN   82 (324)
Q Consensus         5 ~l~~~e~~ry~Rqi~l--~g~~~q~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di   82 (324)
                      .||++|.+||+||+++  ||.++|++|++++|+|+||||+|++++++|+++|||+|+|+|+|.|+.+||+||++++++|+
T Consensus        14 ~l~~~~~~ry~Rq~~l~~~g~~~q~~L~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~di   93 (392)
T PRK07878         14 ELTRDEVARYSRHLIIPDVGVDGQKRLKNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDVVDESNLQRQVIHGQSDV   93 (392)
T ss_pred             CCCHHHHHHhhheechhhcCHHHHHHHhcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecCcccccccccChhcC
Confidence            5999999999999999  99999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCccHHHHHHHHHHhhCCCCeEeEeeCCCCC-CchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEeeecCc
Q 020565           83 VYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSS-LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDS  161 (324)
Q Consensus        83 ~~~G~~ka~~~~~~l~~lnp~v~v~~~~~~~~~-~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~~~~G~  161 (324)
                         |++|+++++++|+++||+++++.+...++. +..++++++|+||+|+|++.++.++|++|++  +++|||++++.|+
T Consensus        94 ---G~~Ka~~a~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~~D~Vvd~~d~~~~r~~ln~~~~~--~~~p~v~~~~~g~  168 (392)
T PRK07878         94 ---GRSKAQSARDSIVEINPLVNVRLHEFRLDPSNAVELFSQYDLILDGTDNFATRYLVNDAAVL--AGKPYVWGSIYRF  168 (392)
T ss_pred             ---CChHHHHHHHHHHHhCCCcEEEEEeccCChhHHHHHHhcCCEEEECCCCHHHHHHHHHHHHH--cCCCEEEEEeccC
Confidence               999999999999999999999999888875 4467899999999999999999999999999  9999999999999


Q ss_pred             eEEEEEecCceeeeecCccccccc-ccCCCChHHhhccCcccCCCchhHHHHHHHHHHHHHHHhCCCCCCCCcccHHHHH
Q 020565          162 CGEIFVDLQNHKYSKQKIEETIEC-QLRYPSFEEAISVPWRALPRKASKLYFALRVLEQFEEAEGRSPGEISIADLPAVL  240 (324)
Q Consensus       162 ~g~v~~d~~~~~~~~~~~~~~~~~-~~~f~~~~e~l~~~~~~~~~~~~~~~~~~~~l~~f~~~~~~~p~~~~~~d~~~~~  240 (324)
                      +|++++.....      +....+| +|.|+...+                                 +.           
T Consensus       169 ~G~v~~~~~~~------~~~~~~c~~c~~~~~~~---------------------------------~~-----------  198 (392)
T PRK07878        169 EGQASVFWEDA------PDGLGLNYRDLYPEPPP---------------------------------PG-----------  198 (392)
T ss_pred             EEEEEEEecCC------CCCCCCeeeeecCCCCC---------------------------------cc-----------
Confidence            99998532110      0001134 344431100                                 00           


Q ss_pred             HHHHHHHHHcCCCCCCCCHHHHHHHHhcCCcccchhHHHHHHHHHHHHHHHhcCCCcccc-eEEEeccCCceeEEecCC
Q 020565          241 KLKKELCEANALNASHVTDSLLERLIIGTREFTPVCAVVGGILGQEVIKAISCKGEPLKN-FFFFDIMDGKGVVEDVSS  318 (324)
Q Consensus       241 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~p~~av~Ggi~aqEviK~itg~~~pl~~-~~~~D~~~~~~~~~~~~~  318 (324)
                        ....|...|+                   ++|+++++|+++|+|+||+|+|.++|+.+ +++||+.+++...+.+.+
T Consensus       199 --~~~~~~~~gv-------------------~g~~~~~~g~~~a~e~ik~l~g~~~~~~~~l~~~d~~~~~~~~~~~~~  256 (392)
T PRK07878        199 --MVPSCAEGGV-------------------LGVLCASIGSIMGTEAIKLITGIGEPLLGRLMVYDALEMTYRTIKIRK  256 (392)
T ss_pred             --CCCCCccCCc-------------------cchHHHHHHHHHHHHHHHHHhCCCCCCcCcEEEEECCCCceeeEeecc
Confidence              0012333444                   99999999999999999999999999876 999999999998888875

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=100.00  E-value=1.6e-46  Score=334.98  Aligned_cols=228  Identities=24%  Similarity=0.341  Sum_probs=193.9

Q ss_pred             HHHhHHHHHhh--hHHHHHHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCcc
Q 020565           11 TALYDRQIRVW--GADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKT   88 (324)
Q Consensus        11 ~~ry~Rqi~l~--g~~~q~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~   88 (324)
                      ++||+||+++|  |.++|++|++++|+|+|+||+|++++++|+++|||+|+++|+|.|+.+||+||+++.++|+   |++
T Consensus         2 ~~ry~Rq~~l~~~g~~~q~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~di---G~~   78 (240)
T TIGR02355         2 MLRYNRQIILRGFDFDGQEALKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANI---GQP   78 (240)
T ss_pred             ccceeeeeecccCCHHHHHHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhC---CCc
Confidence            57999999997  5799999999999999999999999999999999999999999999999999999999999   999


Q ss_pred             HHHHHHHHHHhhCCCCeEeEeeCCCCC-CchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEeeecCceEEEEE
Q 020565           89 IAEVCCDSLKDFNPMVRVSVEKGDLSS-LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFV  167 (324)
Q Consensus        89 ka~~~~~~l~~lnp~v~v~~~~~~~~~-~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~~~~G~~g~v~~  167 (324)
                      |+++++++|+++||+++++.+...+++ +..++++++|+||+|+|+++++.++|++|++  +++|||++++.|+.|++.+
T Consensus        79 Ka~~a~~~l~~inp~v~i~~~~~~i~~~~~~~~~~~~DlVvd~~D~~~~r~~ln~~~~~--~~ip~v~~~~~g~~G~v~~  156 (240)
T TIGR02355        79 KVESAKDALTQINPHIAINPINAKLDDAELAALIAEHDIVVDCTDNVEVRNQLNRQCFA--AKVPLVSGAAIRMEGQVSV  156 (240)
T ss_pred             HHHHHHHHHHHHCCCcEEEEEeccCCHHHHHHHhhcCCEEEEcCCCHHHHHHHHHHHHH--cCCCEEEEEecccEeEEEE
Confidence            999999999999999999999888875 4567889999999999999999999999999  9999999999999999763


Q ss_pred             ecCceeeeecCccccccc-ccCCCChHHhhccCcccCCCchhHHHHHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHH
Q 020565          168 DLQNHKYSKQKIEETIEC-QLRYPSFEEAISVPWRALPRKASKLYFALRVLEQFEEAEGRSPGEISIADLPAVLKLKKEL  246 (324)
Q Consensus       168 d~~~~~~~~~~~~~~~~~-~~~f~~~~e~l~~~~~~~~~~~~~~~~~~~~l~~f~~~~~~~p~~~~~~d~~~~~~~~~~~  246 (324)
                          +.+..     ..+| .|.++.+                                   |..    +         ..
T Consensus       157 ----~~~~~-----~~~c~~C~~~~~-----------------------------------~~~----~---------~~  179 (240)
T TIGR02355       157 ----FTYQD-----GEPCYRCLSRLF-----------------------------------GEN----A---------LS  179 (240)
T ss_pred             ----EecCC-----CCCccccccccC-----------------------------------CCC----C---------CC
Confidence                11111     1133 2221111                                   000    0         00


Q ss_pred             HHHcCCCCCCCCHHHHHHHHhcCCcccchhHHHHHHHHHHHHHHHhcCCCcccc-eEEEeccCCceeEEecCCC
Q 020565          247 CEANALNASHVTDSLLERLIIGTREFTPVCAVVGGILGQEVIKAISCKGEPLKN-FFFFDIMDGKGVVEDVSSP  319 (324)
Q Consensus       247 ~~~~~~~~~~v~~~~~~~~~~~~~~l~p~~av~Ggi~aqEviK~itg~~~pl~~-~~~~D~~~~~~~~~~~~~~  319 (324)
                      |...+                   .++|+++++|+++|+|++|+|+|.++|+.+ ++.||..+++...+.+.+.
T Consensus       180 ~~~~g-------------------v~~p~~~~~~~~~a~e~ik~l~g~~~~l~g~ll~~d~~~~~~~~~~~~~~  234 (240)
T TIGR02355       180 CVEAG-------------------VMAPVVGVVGSLQAMEAIKVLAGIGKPLSGKILMIDAMTMSFREMKLPKN  234 (240)
T ss_pred             ccccC-------------------ccchHHHHHHHHHHHHHHHHHhCCCCCCCCeEEEEECCCCEEEEEeccCC
Confidence            11223                   399999999999999999999999999876 9999999999999988764

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>PRK08223 hypothetical protein; Validated

Probab=100.00  E-value=5.5e-46  Score=335.06  Aligned_cols=253  Identities=17%  Similarity=0.177  Sum_probs=200.2

Q ss_pred             HHHhHHHHHhhhHHHHHHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHH
Q 020565           11 TALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIA   90 (324)
Q Consensus        11 ~~ry~Rqi~l~g~~~q~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka   90 (324)
                      .+||+||+.++|.++|++|++++|+|+||||+||+++++|+++|||+|+|+|+|.|+.+||+||++++.+|+   |++|+
T Consensus         7 ~~~ysRq~~~iG~e~Q~kL~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~di---G~~Kv   83 (287)
T PRK08223          7 DEAFCRNLGWITPTEQQRLRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTL---GRPKA   83 (287)
T ss_pred             HHHHhhhhhhcCHHHHHHHhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHC---CCcHH
Confidence            479999999999999999999999999999999999999999999999999999999999999999999999   99999


Q ss_pred             HHHHHHHHhhCCCCeEeEeeCCCCC-CchhhcCCccEEEEcCCCH--HHHHHHHHHHHhccCCccEEEeeecCceEEEEE
Q 020565           91 EVCCDSLKDFNPMVRVSVEKGDLSS-LDGEFYDKFDVVVVSCCSV--TTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFV  167 (324)
Q Consensus        91 ~~~~~~l~~lnp~v~v~~~~~~~~~-~~~~~~~~~diVi~~~~~~--~~~~~l~~~~~~~~~~ip~i~~~~~G~~g~v~~  167 (324)
                      ++++++++++||+++|+++...+++ +..++++++|+||+|+|++  +++.++|+.|++  +++|+|++++.|+.|++.+
T Consensus        84 e~a~~~l~~iNP~v~V~~~~~~l~~~n~~~ll~~~DlVvD~~D~~~~~~r~~ln~~c~~--~~iP~V~~~~~g~~gqv~v  161 (287)
T PRK08223         84 EVLAEMVRDINPELEIRAFPEGIGKENADAFLDGVDVYVDGLDFFEFDARRLVFAACQQ--RGIPALTAAPLGMGTALLV  161 (287)
T ss_pred             HHHHHHHHHHCCCCEEEEEecccCccCHHHHHhCCCEEEECCCCCcHHHHHHHHHHHHH--cCCCEEEEeccCCeEEEEE
Confidence            9999999999999999999998876 5678899999999999986  899999999999  9999999999999999875


Q ss_pred             ecCceeeeecCccccccc-ccCCCChHHhhccCcccCCCchhHHHHHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHH
Q 020565          168 DLQNHKYSKQKIEETIEC-QLRYPSFEEAISVPWRALPRKASKLYFALRVLEQFEEAEGRSPGEISIADLPAVLKLKKEL  246 (324)
Q Consensus       168 d~~~~~~~~~~~~~~~~~-~~~f~~~~e~l~~~~~~~~~~~~~~~~~~~~l~~f~~~~~~~p~~~~~~d~~~~~~~~~~~  246 (324)
                      -.+.           .|| ++.||..++.-  +...          ..+          ..|+             ....
T Consensus       162 ~~p~-----------~p~~~~~f~~~~~~~--~~~~----------~~~----------~~~~-------------~~p~  195 (287)
T PRK08223        162 FDPG-----------GMSFDDYFDLSDGMN--EVEK----------AVR----------FLAG-------------LAPS  195 (287)
T ss_pred             EcCC-----------CCchhhhcCCCCCCC--chhh----------hcc----------cCCc-------------CCCc
Confidence            3210           133 44444321100  0000          000          0000             0001


Q ss_pred             HHHcCCCCCCCCHHHHHHHHh-cCCcccchhHHHHHHHHHHHHHHHhcCCCcc-c-ceEEEeccCCceeEEecCC
Q 020565          247 CEANALNASHVTDSLLERLII-GTREFTPVCAVVGGILGQEVIKAISCKGEPL-K-NFFFFDIMDGKGVVEDVSS  318 (324)
Q Consensus       247 ~~~~~~~~~~v~~~~~~~~~~-~~~~l~p~~av~Ggi~aqEviK~itg~~~pl-~-~~~~~D~~~~~~~~~~~~~  318 (324)
                      |...|+-   .+...+ .+-+ ..|..++++.++|+++|.|+||+|+|.++++ . .+++||+.++......++.
T Consensus       196 c~~~gvl---~~~~~~-~~~~~~~p~~g~~~g~~g~~~a~E~ik~l~g~g~~~~~~~~~~~d~~~~~~~~~~~~~  266 (287)
T PRK08223        196 MLHRGYL---ADPSRV-DLENRTGPSTGLACQLCAGVVATEVLKILLGRGRVYAAPWFHQFDAYRSRYVRTWRPG  266 (287)
T ss_pred             cccCCcc---cccccc-ccccccCCCccchHHHHHHHHHHHHHHHHhCCCCcCCCCeEEEEEcCCceEEEEEecC
Confidence            2222321   011111 1223 5667899999999999999999999999996 4 4999999999887777653

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=100.00  E-value=1.2e-45  Score=348.05  Aligned_cols=238  Identities=22%  Similarity=0.318  Sum_probs=203.0

Q ss_pred             CCCHHHHHHhHHHHHh--hhHHHHHHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCc
Q 020565            5 ELTEQETALYDRQIRV--WGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDEN   82 (324)
Q Consensus         5 ~l~~~e~~ry~Rqi~l--~g~~~q~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di   82 (324)
                      ++|+.|.+||+||+++  ||.++|++|++++|+|+|+||+|++++++|+++||++|+|+|+|.|+.+||+||++++++|+
T Consensus        13 ~~~~~e~~ry~Rqi~l~~~g~~~q~~l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~di   92 (370)
T PRK05600         13 QLPTSELRRTARQLALPGFGIEQQERLHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDV   92 (370)
T ss_pred             CCCHHHHHHhhcccchhhhCHHHHHHhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHC
Confidence            4889999999999999  99999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCccHHHHHHHHHHhhCCCCeEeEeeCCCCC-CchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEeeecCc
Q 020565           83 VYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSS-LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDS  161 (324)
Q Consensus        83 ~~~G~~ka~~~~~~l~~lnp~v~v~~~~~~~~~-~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~~~~G~  161 (324)
                         |++|+++++++|+++||+++++.+...+++ +..++++++|+||+|+|+++++..+|++|++  +++|+|++++.|+
T Consensus        93 ---G~~Ka~~~~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~~DlVid~~Dn~~~r~~in~~~~~--~~iP~v~~~~~g~  167 (370)
T PRK05600         93 ---GRPKVEVAAERLKEIQPDIRVNALRERLTAENAVELLNGVDLVLDGSDSFATKFLVADAAEI--TGTPLVWGTVLRF  167 (370)
T ss_pred             ---CCHHHHHHHHHHHHHCCCCeeEEeeeecCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHH--cCCCEEEEEEecC
Confidence               999999999999999999999999988875 4567899999999999999999999999999  9999999999999


Q ss_pred             eEEEEEecCceeeeecCccccccc-ccCCCChHHhhccCcccCCCchhHHHHHHHHHHHHHHHhCCCCCCCCcccHHHHH
Q 020565          162 CGEIFVDLQNHKYSKQKIEETIEC-QLRYPSFEEAISVPWRALPRKASKLYFALRVLEQFEEAEGRSPGEISIADLPAVL  240 (324)
Q Consensus       162 ~g~v~~d~~~~~~~~~~~~~~~~~-~~~f~~~~e~l~~~~~~~~~~~~~~~~~~~~l~~f~~~~~~~p~~~~~~d~~~~~  240 (324)
                      .|++.+...    ...   ...+| .+.||..                                   |..   .      
T Consensus       168 ~G~v~v~~~----~~~---~~~~~~~~l~~~~-----------------------------------~~~---~------  196 (370)
T PRK05600        168 HGELAVFNS----GPD---HRGVGLRDLFPEQ-----------------------------------PSG---D------  196 (370)
T ss_pred             EEEEEEEec----CCC---CCCCCcHhhCCCC-----------------------------------Ccc---c------
Confidence            999874211    000   00122 2223211                                   000   0      


Q ss_pred             HHHHHHHHHcCCCCCCCCHHHHHHHHhcCCcccchhHHHHHHHHHHHHHHHhcCCCcccc-eEEEeccCCceeEEecCCC
Q 020565          241 KLKKELCEANALNASHVTDSLLERLIIGTREFTPVCAVVGGILGQEVIKAISCKGEPLKN-FFFFDIMDGKGVVEDVSSP  319 (324)
Q Consensus       241 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~p~~av~Ggi~aqEviK~itg~~~pl~~-~~~~D~~~~~~~~~~~~~~  319 (324)
                        ....|...|+                   ++|+++++|+++|+|++|+|+|.++|+.+ ++.||+.+++...+.+.+.
T Consensus       197 --~~~~c~~~gv-------------------lg~~~~~ig~~~a~eaik~l~g~g~~l~g~ll~~d~~~~~~~~~~~~~~  255 (370)
T PRK05600        197 --SIPDCATAGV-------------------LGATTAVIGALMATEAIKFLTGIGDVQPGTVLSYDALTATTRSFRVGAD  255 (370)
T ss_pred             --cCCCCccCCc-------------------chhHHHHHHHHHHHHHHHHHhCCCCCCcCcEEEEECCCCEEEEEEecCC
Confidence              0001223333                   99999999999999999999999999887 9999999999999988753

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=100.00  E-value=1.2e-45  Score=328.26  Aligned_cols=223  Identities=25%  Similarity=0.393  Sum_probs=190.4

Q ss_pred             HhHHHHHh--hhHHHHHHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHH
Q 020565           13 LYDRQIRV--WGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIA   90 (324)
Q Consensus        13 ry~Rqi~l--~g~~~q~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka   90 (324)
                      ||+||+++  ||.++|++|++++|+|+||||+|++++++|+++||++|+|+|+|.|+++|++||+|+.++|+   |++|+
T Consensus         1 rY~Rq~~l~~~g~~~q~~L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~di---G~~Ka   77 (228)
T cd00757           1 RYSRQILLPEIGEEGQEKLKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADV---GQPKA   77 (228)
T ss_pred             CcceeechhhcCHHHHHHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhC---CChHH
Confidence            79999999  99999999999999999999999999999999999999999999999999999999999999   99999


Q ss_pred             HHHHHHHHhhCCCCeEeEeeCCCCC-CchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEeeecCceEEEEEec
Q 020565           91 EVCCDSLKDFNPMVRVSVEKGDLSS-LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFVDL  169 (324)
Q Consensus        91 ~~~~~~l~~lnp~v~v~~~~~~~~~-~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~~~~G~~g~v~~d~  169 (324)
                      ++++++|+++||+++++.+...++. ...++++++|+||+|.|+++.+.+++++|++  +++|+|++++.|+.|++....
T Consensus        78 ~~~~~~l~~~np~~~i~~~~~~i~~~~~~~~~~~~DvVi~~~d~~~~r~~l~~~~~~--~~ip~i~~g~~g~~g~v~~~~  155 (228)
T cd00757          78 EAAAERLRAINPDVEIEAYNERLDAENAEELIAGYDLVLDCTDNFATRYLINDACVK--LGKPLVSGAVLGFEGQVTVFI  155 (228)
T ss_pred             HHHHHHHHHhCCCCEEEEecceeCHHHHHHHHhCCCEEEEcCCCHHHHHHHHHHHHH--cCCCEEEEEeccCEEEEEEEC
Confidence            9999999999999999999888754 4467889999999999999999999999999  999999999999999987432


Q ss_pred             CceeeeecCccccccc-ccCCCChHHhhccCcccCCCchhHHHHHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHHHH
Q 020565          170 QNHKYSKQKIEETIEC-QLRYPSFEEAISVPWRALPRKASKLYFALRVLEQFEEAEGRSPGEISIADLPAVLKLKKELCE  248 (324)
Q Consensus       170 ~~~~~~~~~~~~~~~~-~~~f~~~~e~l~~~~~~~~~~~~~~~~~~~~l~~f~~~~~~~p~~~~~~d~~~~~~~~~~~~~  248 (324)
                      +.          ..+| .|.|+..                                   |.    ++        ...+.
T Consensus       156 p~----------~~~c~~c~~~~~-----------------------------------~~----~~--------~~~~~  178 (228)
T cd00757         156 PG----------EGPCYRCLFPEP-----------------------------------PP----PG--------VPSCA  178 (228)
T ss_pred             CC----------CCCCccccCCCC-----------------------------------CC----CC--------CCccc
Confidence            21          1123 2222211                                   00    00        00011


Q ss_pred             HcCCCCCCCCHHHHHHHHhcCCcccchhHHHHHHHHHHHHHHHhcCCCcccc-eEEEeccCCceeEEec
Q 020565          249 ANALNASHVTDSLLERLIIGTREFTPVCAVVGGILGQEVIKAISCKGEPLKN-FFFFDIMDGKGVVEDV  316 (324)
Q Consensus       249 ~~~~~~~~v~~~~~~~~~~~~~~l~p~~av~Ggi~aqEviK~itg~~~pl~~-~~~~D~~~~~~~~~~~  316 (324)
                                         ..+.++|+++++|+++|+|++|+|+|..+|+.+ +++||..+++...+++
T Consensus       179 -------------------~~~~~~~~~~~~a~l~a~e~i~~l~g~~~~~~~~~~~~d~~~~~~~~~~~  228 (228)
T cd00757         179 -------------------EAGVLGPLVGVIGSLQALEALKILLGIGEPLAGRLLLFDALSMSFRTLKL  228 (228)
T ss_pred             -------------------cCCcchhHHHHHHHHHHHHHHHHHhCCCCcCcCeEEEEECCCCEEEEEeC
Confidence                               234599999999999999999999999988765 9999999999887764

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=100.00  E-value=1.8e-43  Score=330.07  Aligned_cols=224  Identities=21%  Similarity=0.307  Sum_probs=194.5

Q ss_pred             HHhHHHHHh--hhHHHHHHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCc--
Q 020565           12 ALYDRQIRV--WGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGK--   87 (324)
Q Consensus        12 ~ry~Rqi~l--~g~~~q~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~--   87 (324)
                      +||+||+++  ||.++|++|++++|+|+|+||+|++++++|+++|||+|+|+|.|.|+.+||+||+++.++|+   |+  
T Consensus         3 ~rY~Rq~~l~~~G~~~Q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~di---g~g~   79 (339)
T PRK07688          3 ERYSRQELFSPIGEEGQQKLREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDV---KNNL   79 (339)
T ss_pred             chhhhhhchhhcCHHHHHHhcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHh---cCCC
Confidence            699999998  99999999999999999999999999999999999999999999999999999999999999   75  


Q ss_pred             cHHHHHHHHHHhhCCCCeEeEeeCCCCC-CchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEeeecCceEEEE
Q 020565           88 TIAEVCCDSLKDFNPMVRVSVEKGDLSS-LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIF  166 (324)
Q Consensus        88 ~ka~~~~~~l~~lnp~v~v~~~~~~~~~-~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~~~~G~~g~v~  166 (324)
                      +|+++++++++++||+++++.+...++. +..++++++|+||+|+|+++++..+|++|++  .++|+|++++.|++|+++
T Consensus        80 ~Ka~aa~~~l~~inp~v~v~~~~~~~~~~~~~~~~~~~DlVid~~Dn~~~r~~ln~~~~~--~~iP~i~~~~~g~~G~~~  157 (339)
T PRK07688         80 PKAVAAKKRLEEINSDVRVEAIVQDVTAEELEELVTGVDLIIDATDNFETRFIVNDAAQK--YGIPWIYGACVGSYGLSY  157 (339)
T ss_pred             cHHHHHHHHHHHHCCCcEEEEEeccCCHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHHHH--hCCCEEEEeeeeeeeEEE
Confidence            9999999999999999999999888765 4567889999999999999999999999999  999999999999999977


Q ss_pred             EecCceeeeecCccccccc-ccCCCChHHhhccCcccCCCchhHHHHHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHH
Q 020565          167 VDLQNHKYSKQKIEETIEC-QLRYPSFEEAISVPWRALPRKASKLYFALRVLEQFEEAEGRSPGEISIADLPAVLKLKKE  245 (324)
Q Consensus       167 ~d~~~~~~~~~~~~~~~~~-~~~f~~~~e~l~~~~~~~~~~~~~~~~~~~~l~~f~~~~~~~p~~~~~~d~~~~~~~~~~  245 (324)
                      +..+.          ..+| +|.|+..                                   |...             .
T Consensus       158 ~~~p~----------~~pC~~Cl~~~~-----------------------------------~~~~-------------~  179 (339)
T PRK07688        158 TIIPG----------KTPCLRCLLQSI-----------------------------------PLGG-------------A  179 (339)
T ss_pred             EECCC----------CCCCeEeecCCC-----------------------------------CCCC-------------C
Confidence            43211          1245 3444332                                   1000             0


Q ss_pred             HHHHcCCCCCCCCHHHHHHHHhcCCcccchhHHHHHHHHHHHHHHHhcCCCcccc-eEEEeccCCceeEEecC
Q 020565          246 LCEANALNASHVTDSLLERLIIGTREFTPVCAVVGGILGQEVIKAISCKGEPLKN-FFFFDIMDGKGVVEDVS  317 (324)
Q Consensus       246 ~~~~~~~~~~~v~~~~~~~~~~~~~~l~p~~av~Ggi~aqEviK~itg~~~pl~~-~~~~D~~~~~~~~~~~~  317 (324)
                      .|...|+                   ++|+++++|+++|+|++|+|+|.+.++.+ ++.||..+++...+.+.
T Consensus       180 ~c~~~gv-------------------~~p~~~~i~~~~a~ealk~l~g~~~~l~~~l~~~d~~~~~~~~~~~~  233 (339)
T PRK07688        180 TCDTAGI-------------------ISPAVQIVASYQVTEALKLLVGDYEALRDGLVSFDVWKNEYSCMNVQ  233 (339)
T ss_pred             CCccCCc-------------------ccHHHHHHHHHHHHHHHHHHhCCCCCCCCeEEEEECCCCeEEEEEec
Confidence            1233344                   99999999999999999999999999886 88999999999888775

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=100.00  E-value=3e-43  Score=328.36  Aligned_cols=227  Identities=22%  Similarity=0.333  Sum_probs=194.4

Q ss_pred             HHhHHHHHh--hhHHHHHHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccH
Q 020565           12 ALYDRQIRV--WGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTI   89 (324)
Q Consensus        12 ~ry~Rqi~l--~g~~~q~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~k   89 (324)
                      +||+||+++  ||.++|++|++++|+|||+||+|++++++|+++|||+|+|+|.|.|+.+||+||+++.++|+ ..|++|
T Consensus         3 ~rY~Rq~~~~~~G~~~Q~~L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~-~~g~~K   81 (338)
T PRK12475          3 ERYSRQILFSGIGEEGQRKIREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDA-KQKKPK   81 (338)
T ss_pred             chhhhhhchhhcCHHHHHhhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHc-cCCccH
Confidence            699999998  89999999999999999999999999999999999999999999999999999999999997 114899


Q ss_pred             HHHHHHHHHhhCCCCeEeEeeCCCCC-CchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEeeecCceEEEEEe
Q 020565           90 AEVCCDSLKDFNPMVRVSVEKGDLSS-LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFVD  168 (324)
Q Consensus        90 a~~~~~~l~~lnp~v~v~~~~~~~~~-~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~~~~G~~g~v~~d  168 (324)
                      +++++++|+++||+++++.+..+++. ..+++++++|+||+|+|+++++..+|++|++  +++|+|++++.|++|++++.
T Consensus        82 a~aa~~~l~~inp~v~i~~~~~~~~~~~~~~~~~~~DlVid~~D~~~~r~~in~~~~~--~~ip~i~~~~~g~~G~~~~~  159 (338)
T PRK12475         82 AIAAKEHLRKINSEVEIVPVVTDVTVEELEELVKEVDLIIDATDNFDTRLLINDLSQK--YNIPWIYGGCVGSYGVTYTI  159 (338)
T ss_pred             HHHHHHHHHHHCCCcEEEEEeccCCHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHHH--cCCCEEEEEecccEEEEEEE
Confidence            99999999999999999998887764 4567889999999999999999999999999  99999999999999998753


Q ss_pred             cCceeeeecCccccccc-ccCCCChHHhhccCcccCCCchhHHHHHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHHH
Q 020565          169 LQNHKYSKQKIEETIEC-QLRYPSFEEAISVPWRALPRKASKLYFALRVLEQFEEAEGRSPGEISIADLPAVLKLKKELC  247 (324)
Q Consensus       169 ~~~~~~~~~~~~~~~~~-~~~f~~~~e~l~~~~~~~~~~~~~~~~~~~~l~~f~~~~~~~p~~~~~~d~~~~~~~~~~~~  247 (324)
                      .+.          ..|| .|.|+..                                   |...             ..|
T Consensus       160 ~P~----------~tpC~~Cl~~~~-----------------------------------p~~~-------------~~c  181 (338)
T PRK12475        160 IPG----------KTPCLRCLMEHV-----------------------------------PVGG-------------ATC  181 (338)
T ss_pred             CCC----------CCCCHHHhcCCC-----------------------------------CCCC-------------CCC
Confidence            221          1244 3333211                                   1100             012


Q ss_pred             HHcCCCCCCCCHHHHHHHHhcCCcccchhHHHHHHHHHHHHHHHhcCCCcccc-eEEEeccCCceeEEecCC
Q 020565          248 EANALNASHVTDSLLERLIIGTREFTPVCAVVGGILGQEVIKAISCKGEPLKN-FFFFDIMDGKGVVEDVSS  318 (324)
Q Consensus       248 ~~~~~~~~~v~~~~~~~~~~~~~~l~p~~av~Ggi~aqEviK~itg~~~pl~~-~~~~D~~~~~~~~~~~~~  318 (324)
                      ...|+                   ++|+.+++|+++|.|++|+|+|...++.+ ++.||.++++...+.++.
T Consensus       182 ~~~Gv-------------------l~p~v~~iaslqa~EalK~L~g~~~~l~~~Ll~~D~~~~~~~~~~~~~  234 (338)
T PRK12475        182 DTAGI-------------------IQPAVQIVVAYQVTEALKILVEDFEALRETFLSFDIWNNQNMSIKVNK  234 (338)
T ss_pred             ccCCc-------------------CchHHHHHHHHHHHHHHHHHhCCCCCCcCeEEEEECCCCeEEEEEecc
Confidence            33344                   99999999999999999999999999886 889999999998888854

>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]

Probab=100.00  E-value=5.8e-44  Score=319.37  Aligned_cols=237  Identities=26%  Similarity=0.347  Sum_probs=213.4

Q ss_pred             CCCCHHHHHHhHHHHHh--hhHHHHHHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCC
Q 020565            4 EELTEQETALYDRQIRV--WGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDE   81 (324)
Q Consensus         4 ~~l~~~e~~ry~Rqi~l--~g~~~q~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~d   81 (324)
                      ..||.+|..||+||+.+  +|..||.+|++++||||||||+||.++..|+.+|||.+-|||.|+|+.+|+.||.+.+++.
T Consensus        37 ~~Ls~dei~RYsRQlilpe~gV~GQ~~Lk~s~VLVVGaGGLGcPa~~YLaaaGvG~lGiVD~DvVe~sNlhRQVlh~ea~  116 (427)
T KOG2017|consen   37 AGLSLDEILRYSRQLILPEFGVHGQLSLKNSSVLVVGAGGLGCPAAQYLAAAGVGRLGIVDYDVVELSNLHRQVLHTEAR  116 (427)
T ss_pred             cCCCHHHHHhhhheeeccccccccccccCCccEEEEccCCCCCHHHHHHHHcCCCeecccccceeehhhHHHHHhhhhhh
Confidence            46999999999999999  8999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCccHHHHHHHHHHhhCCCCeEeEeeCCCCC-CchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEeeecC
Q 020565           82 NVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSS-LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRD  160 (324)
Q Consensus        82 i~~~G~~ka~~~~~~l~~lnp~v~v~~~~~~~~~-~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~~~~G  160 (324)
                      +   |+.|+++++..++++||+++|+.+.+.++. ++.+++++||+|++|+||+.+|+.|++.|..  .++|++++.+.+
T Consensus       117 v---g~~Ka~sA~~~lr~lNs~v~v~~y~~~L~~sNa~~Ii~~YdvVlDCTDN~~TRYLisD~CVl--LgkpLVSgSaLr  191 (427)
T KOG2017|consen  117 V---GMHKAESAAAFLRRLNSHVEVQTYNEFLSSSNAFDIIKQYDVVLDCTDNVPTRYLISDVCVL--LGKPLVSGSALR  191 (427)
T ss_pred             h---hhHHHHHHHHHHHhcCCCceeeechhhccchhHHHHhhccceEEEcCCCccchhhhhhHHHH--cCCccccccccc
Confidence            9   999999999999999999999999999885 7788999999999999999999999999999  999999999999


Q ss_pred             ceEEEEEecCceeeeecCccccccc-ccCCCChHHhhccCcccCCCchhHHHHHHHHHHHHHHHhCCCCCCCCcccHHHH
Q 020565          161 SCGEIFVDLQNHKYSKQKIEETIEC-QLRYPSFEEAISVPWRALPRKASKLYFALRVLEQFEEAEGRSPGEISIADLPAV  239 (324)
Q Consensus       161 ~~g~v~~d~~~~~~~~~~~~~~~~~-~~~f~~~~e~l~~~~~~~~~~~~~~~~~~~~l~~f~~~~~~~p~~~~~~d~~~~  239 (324)
                      +.|++-+    |.|..      -|| +|.||+-                                   |.      .+  
T Consensus       192 ~EGQLtv----Yny~~------GPCYRClFP~P-----------------------------------pp------~~--  218 (427)
T KOG2017|consen  192 WEGQLTV----YNYNN------GPCYRCLFPNP-----------------------------------PP------PE--  218 (427)
T ss_pred             ccceeEE----eecCC------CceeeecCCCC-----------------------------------cC------hH--
Confidence            9999864    44422      377 7777643                                   11      11  


Q ss_pred             HHHHHHHHHHcCCCCCCCCHHHHHHHHhcCCcccchhHHHHHHHHHHHHHHHhcCCCcccc-eEEEeccCCceeEEecCC
Q 020565          240 LKLKKELCEANALNASHVTDSLLERLIIGTREFTPVCAVVGGILGQEVIKAISCKGEPLKN-FFFFDIMDGKGVVEDVSS  318 (324)
Q Consensus       240 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~p~~av~Ggi~aqEviK~itg~~~pl~~-~~~~D~~~~~~~~~~~~~  318 (324)
                         +-..|.+.|+                   ++|++.++|.|+|-|+||+++|-++++.. +++||+.++....+.+-+
T Consensus       219 ---~vt~C~dgGV-------------------lGpv~GviG~mQALE~iKli~~~~~~~s~~lllfdg~~~~~r~irlR~  276 (427)
T KOG2017|consen  219 ---AVTNCADGGV-------------------LGPVTGVIGCMQALETIKLIAGIGESLSGRLLLFDGLSGHFRTIRLRS  276 (427)
T ss_pred             ---HhcccccCce-------------------eecchhhhhHHHHHHHHHHHHccCccCCcceEEEecccceeEEEEecc
Confidence               2335666777                   99999999999999999999999999986 999999999988888875


Q ss_pred             CC
Q 020565          319 PK  320 (324)
Q Consensus       319 ~~  320 (324)
                      .+
T Consensus       277 r~  278 (427)
T KOG2017|consen  277 RR  278 (427)
T ss_pred             CC
Confidence            43

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=100.00  E-value=1.8e-43  Score=308.30  Aligned_cols=150  Identities=24%  Similarity=0.389  Sum_probs=144.2

Q ss_pred             HhHHHHHh--hhHHHHHHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHH
Q 020565           13 LYDRQIRV--WGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIA   90 (324)
Q Consensus        13 ry~Rqi~l--~g~~~q~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka   90 (324)
                      |||||+++  ||.++|++|++++|+|+|+||+|++++++|+++|+++++++|+|.|+.+||+||++++++|+   |++|+
T Consensus         1 rY~Rqi~l~~~g~~~q~kl~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~di---G~~Ka   77 (202)
T TIGR02356         1 RYARQLLLPDIGEEGQQRLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDV---GRPKV   77 (202)
T ss_pred             CCcceecchhcCHHHHHHhcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhC---CChHH
Confidence            79999999  99999999999999999999999999999999999999999999999999999999999999   99999


Q ss_pred             HHHHHHHHhhCCCCeEeEeeCCCCC-CchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEeeecCceEEEEE
Q 020565           91 EVCCDSLKDFNPMVRVSVEKGDLSS-LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFV  167 (324)
Q Consensus        91 ~~~~~~l~~lnp~v~v~~~~~~~~~-~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~~~~G~~g~v~~  167 (324)
                      ++++++|+++||+++++.+...+++ ...++++++|+||+|+|+.+.+.++|++|++  +++|||.+++.|++|++++
T Consensus        78 ~~~~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~~D~Vi~~~d~~~~r~~l~~~~~~--~~ip~i~~~~~g~~G~~~~  153 (202)
T TIGR02356        78 EVAAQRLRELNSDIQVTALKERVTAENLELLINNVDLVLDCTDNFATRYLINDACVA--LGTPLISAAVVGFGGQLMV  153 (202)
T ss_pred             HHHHHHHHHhCCCCEEEEehhcCCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHH--cCCCEEEEEeccCeEEEEE
Confidence            9999999999999999999888765 3467889999999999999999999999999  9999999999999999985

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=100.00  E-value=4e-42  Score=326.72  Aligned_cols=239  Identities=23%  Similarity=0.341  Sum_probs=202.5

Q ss_pred             CCCCHHHHHHhHHHHHh--hhHHHHHHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCC
Q 020565            4 EELTEQETALYDRQIRV--WGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDE   81 (324)
Q Consensus         4 ~~l~~~e~~ry~Rqi~l--~g~~~q~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~d   81 (324)
                      ..++.+|.+||+||+++  ||.++|++|++++|+|+|+||+|++++++|+++||++|+|+|+|.|+.+|++||++++++|
T Consensus       106 ~~~s~~~~~~y~r~i~l~~~g~~~q~~l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~d  185 (376)
T PRK08762        106 RLLTDEQDERYSRHLRLPEVGEEGQRRLLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDR  185 (376)
T ss_pred             cCCCHHHHHHHHHhcchhhcCHHHHHHHhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchhh
Confidence            35788899999999999  9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCccHHHHHHHHHHhhCCCCeEeEeeCCCCC-CchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEeeecC
Q 020565           82 NVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSS-LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRD  160 (324)
Q Consensus        82 i~~~G~~ka~~~~~~l~~lnp~v~v~~~~~~~~~-~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~~~~G  160 (324)
                      +   |++|+++++++|+++||.++++.+...+++ ...++++++|+||+|+|+++.+.++|++|++  +++|+|++++.|
T Consensus       186 i---G~~Ka~~~~~~l~~~np~v~v~~~~~~~~~~~~~~~~~~~D~Vv~~~d~~~~r~~ln~~~~~--~~ip~i~~~~~g  260 (376)
T PRK08762        186 V---GQPKVDSAAQRLAALNPDVQVEAVQERVTSDNVEALLQDVDVVVDGADNFPTRYLLNDACVK--LGKPLVYGAVFR  260 (376)
T ss_pred             C---CCcHHHHHHHHHHHHCCCCEEEEEeccCChHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHH--cCCCEEEEEecc
Confidence            9   999999999999999999999998877765 4466789999999999999999999999999  999999999999


Q ss_pred             ceEEEEEecCceeeeecCccccccc-ccCCCChHHhhccCcccCCCchhHHHHHHHHHHHHHHHhCCCCCCCCcccHHHH
Q 020565          161 SCGEIFVDLQNHKYSKQKIEETIEC-QLRYPSFEEAISVPWRALPRKASKLYFALRVLEQFEEAEGRSPGEISIADLPAV  239 (324)
Q Consensus       161 ~~g~v~~d~~~~~~~~~~~~~~~~~-~~~f~~~~e~l~~~~~~~~~~~~~~~~~~~~l~~f~~~~~~~p~~~~~~d~~~~  239 (324)
                      +.|++.+..+...      +...+| .|.|+..                                   |..   .     
T Consensus       261 ~~g~v~~~~p~~~------~~~~~c~~c~~~~~-----------------------------------~~~---~-----  291 (376)
T PRK08762        261 FEGQVSVFDAGRQ------RGQAPCYRCLFPEP-----------------------------------PPP---E-----  291 (376)
T ss_pred             CEEEEEEEeCCCC------CCCCCCHhhcCCCC-----------------------------------CCc---c-----
Confidence            9999885322100      001244 3333311                                   000   0     


Q ss_pred             HHHHHHHHHHcCCCCCCCCHHHHHHHHhcCCcccchhHHHHHHHHHHHHHHHhcCCCcccc-eEEEeccCCceeEEecCC
Q 020565          240 LKLKKELCEANALNASHVTDSLLERLIIGTREFTPVCAVVGGILGQEVIKAISCKGEPLKN-FFFFDIMDGKGVVEDVSS  318 (324)
Q Consensus       240 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~p~~av~Ggi~aqEviK~itg~~~pl~~-~~~~D~~~~~~~~~~~~~  318 (324)
                         ....|...|+                   ++|+++++|+++|+|++|+|+|.++|+.+ +++||..+++...+.+.+
T Consensus       292 ---~~~~~~~~gv-------------------~g~~~~~~~~~~a~e~~k~l~g~~~~~~~~~~~~d~~~~~~~~~~~~~  349 (376)
T PRK08762        292 ---LAPSCAEAGV-------------------LGVLPGVIGLLQATEAIKLLLGIGDPLTGRLLTFDALAMRFRELRLPP  349 (376)
T ss_pred             ---cCCCCccCCc-------------------chhhHHHHHHHHHHHHHHHHhCCCCCCCCeEEEEECCCCeEEEEeccC
Confidence               0001333344                   99999999999999999999999999876 999999999999888865

>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3

Probab=100.00  E-value=1.3e-40  Score=302.15  Aligned_cols=266  Identities=21%  Similarity=0.259  Sum_probs=206.2

Q ss_pred             cEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEeeCC
Q 020565           33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGD  112 (324)
Q Consensus        33 ~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~~~  112 (324)
                      ||+|+|+||+|||++|+|+++|||+|+|+|.|.|+.+||+|||||+++|+   |++||++++++|+++||.++++.+...
T Consensus         1 kVlVVGaGGlG~eilknLal~Gvg~I~IvD~D~Ve~SNLnRQfLf~~~dI---Gk~KAevaa~~l~~~np~v~I~~~~~~   77 (291)
T cd01488           1 KILVIGAGGLGCELLKNLALSGFRNIHVIDMDTIDVSNLNRQFLFREKDI---GKPKAEVAAKFVNDRVPGVNVTPHFGK   77 (291)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecccccCcCcccChHHc---chHHHHHHHHHHHHHCCCCEEEEEecc
Confidence            69999999999999999999999999999999999999999999999999   999999999999999999999999998


Q ss_pred             CCCCchhhcCCccEEEEcCCCHHHHHHHHHHHHhcc------CCccEEEeeecCceEEEEEecCcee--e---eecCccc
Q 020565          113 LSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLS------KRVAFYTVDCRDSCGEIFVDLQNHK--Y---SKQKIEE  181 (324)
Q Consensus       113 ~~~~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~------~~ip~i~~~~~G~~g~v~~d~~~~~--~---~~~~~~~  181 (324)
                      +.+...++++++|+||+|.|+.+.|.++|+.|.++.      .++|+|.+++.|+.|++.+.++..+  +   .+..++.
T Consensus        78 i~~~~~~f~~~fdvVi~alDn~~aR~~in~~~~~~~~~~~~~~~iPlI~~gt~G~~G~v~vi~P~~t~C~~C~~d~~p~~  157 (291)
T cd01488          78 IQDKDEEFYRQFNIIICGLDSIEARRWINGTLVSLLLYEDPESIIPLIDGGTEGFKGHARVILPGITACIECSLDLFPPQ  157 (291)
T ss_pred             cCchhHHHhcCCCEEEECCCCHHHHHHHHHHHHHhccccccccCccEEEEEEcccEEEEEEEcCCCCCccccCCCCCCCC
Confidence            887778999999999999999999999999876521      3599999999999999988776432  1   1111111


Q ss_pred             -cc-cccc-CCCChHHhhccCcccCCCchhHHHHHHHHHHHHHHHhCCCC-CCCCcccHHHHHHHHHHHHHHcCCCCCCC
Q 020565          182 -TI-ECQL-RYPSFEEAISVPWRALPRKASKLYFALRVLEQFEEAEGRSP-GEISIADLPAVLKLKKELCEANALNASHV  257 (324)
Q Consensus       182 -~~-~~~~-~f~~~~e~l~~~~~~~~~~~~~~~~~~~~l~~f~~~~~~~p-~~~~~~d~~~~~~~~~~~~~~~~~~~~~v  257 (324)
                       .. -|++ .+|+..+ +.+.|.+.-              .|.+.+...+ ...+.+..+-+++.+++..+.+++  ..+
T Consensus       158 ~~~p~Cti~~~P~~~~-hci~~a~~~--------------~~~~~~~~~~~~~d~~~~~~~i~~~a~~ra~~f~i--~~~  220 (291)
T cd01488         158 VTFPLCTIANTPRLPE-HCIEYASLI--------------QWPKEFPFVPLDGDDPEHIEWLYQKALERAAQFNI--SGV  220 (291)
T ss_pred             CCCCcccccCCCCCcc-hheeeeeee--------------ecccccCCCcCCCCCHHHHHHHHHHHHHHHHHcCC--Ccc
Confidence             11 1332 2333322 333343320              1222221111 111222233345667777777777  468


Q ss_pred             CHHHHHHHHh-cCCcccchhHHHHHHHHHHHHHHHhcCCCcccceEEEeccCCce-eEEecCC
Q 020565          258 TDSLLERLII-GTREFTPVCAVVGGILGQEVIKAISCKGEPLKNFFFFDIMDGKG-VVEDVSS  318 (324)
Q Consensus       258 ~~~~~~~~~~-~~~~l~p~~av~Ggi~aqEviK~itg~~~pl~~~~~~D~~~~~~-~~~~~~~  318 (324)
                      +..++..++. .-|.+++++|++|+.++.|++|++|+...+++||+.|.+.++.. ..+.+.+
T Consensus       221 ~~~~~~~v~~~iiPai~stnaiia~~~~~~~~k~~~~~~~~~~n~~~~~g~~g~~~~~~~~~~  283 (291)
T cd01488         221 TYSLTQGVVKRIIPAVASTNAIIAAACCLEALKIATDCYENLNNYLMYNGVDGCYTYTFEHER  283 (291)
T ss_pred             cHHHHhhhHheeeCccCchHHHHHHHHHHHHHHHHhccccCCCceEEEecCCceEEEEEEEee
Confidence            8899999998 99999999999999999999999999999999999999998743 4555444

UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.

>COG0476 ThiF Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]

Probab=100.00  E-value=1e-38  Score=288.35  Aligned_cols=236  Identities=29%  Similarity=0.451  Sum_probs=201.2

Q ss_pred             CCCHHHHHHhHHHHHhhhH--HHHHHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCc
Q 020565            5 ELTEQETALYDRQIRVWGA--DAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDEN   82 (324)
Q Consensus         5 ~l~~~e~~ry~Rqi~l~g~--~~q~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di   82 (324)
                      .+++.+.+||+||+++|+.  ++|++|++++|+|+|+||+|++++++|+++|||+++++|+|.|+.+||+||++++++|+
T Consensus         2 ~~~~~~~~ry~Rqi~l~~~~~~~q~~l~~s~vlvvG~GglG~~~~~~la~aGvg~l~i~D~d~v~~snL~rq~~~~~~di   81 (254)
T COG0476           2 MLSDEEIERYSRQILLPGIGGEGQQKLKDSRVLVVGAGGLGSPAAKYLALAGVGKLTIVDFDTVELSNLQRQFLFTEADV   81 (254)
T ss_pred             CccHHHHHhhcceeeecccCHHHHHHHhhCCEEEEecChhHHHHHHHHHHcCCCeEEEEcCCcccccccCceeeeccccc
Confidence            4789999999999999754  45999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCccHHHHHHHHHHhhCCCCeEeEeeCCCCC-CchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEeeecCc
Q 020565           83 VYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSS-LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDS  161 (324)
Q Consensus        83 ~~~G~~ka~~~~~~l~~lnp~v~v~~~~~~~~~-~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~~~~G~  161 (324)
                         |++|++++++.++++||.+++..+...++. ...++++++|+|++|+|+++++..+|++|++  .++|++++++.|+
T Consensus        82 ---g~~Ka~~a~~~l~~ln~~v~v~~~~~~l~~~~~~~~~~~~d~v~d~~dn~~~r~~iN~~~~~--~~~pli~~~~~~~  156 (254)
T COG0476          82 ---GKPKAEVAAKALRKLNPLVEVVAYLERLDEENAEELIAQFDVVLDCTDNFETRYLINDACVK--LGIPLVHGGAIGF  156 (254)
T ss_pred             ---CCcHHHHHHHHHHHhCCCCeEEEeecccChhhHHHHhccCCEEEECCCCHHHHHHHHHHHHH--hCCCeEeeeeccc
Confidence               999999999999999999999999988876 4468899999999999999999999999999  9999999999999


Q ss_pred             eEEEEEecCceeeeecCccccccc-ccCCCChHHhhccCcccCCCchhHHHHHHHHHHHHHHHhCCCCCCCCcccHHHHH
Q 020565          162 CGEIFVDLQNHKYSKQKIEETIEC-QLRYPSFEEAISVPWRALPRKASKLYFALRVLEQFEEAEGRSPGEISIADLPAVL  240 (324)
Q Consensus       162 ~g~v~~d~~~~~~~~~~~~~~~~~-~~~f~~~~e~l~~~~~~~~~~~~~~~~~~~~l~~f~~~~~~~p~~~~~~d~~~~~  240 (324)
                      +|+++++.+..         +.+| +|.||....                                 ++.          
T Consensus       157 ~g~~~~~~~~~---------~~~c~~~~~~~~~~---------------------------------~~~----------  184 (254)
T COG0476         157 EGQVTVIIPGD---------KTPCYRCLFPEKPP---------------------------------PGL----------  184 (254)
T ss_pred             eEEEEEEecCC---------CCCcccccCCCCCC---------------------------------ccc----------
Confidence            99999766532         1244 334433210                                 000          


Q ss_pred             HHHHHHHHHcCCCCCCCCHHHHHHHHhcCCcccchhHHHHHHHHHHHHHHHhcCC-Ccccc-eEEEeccCC-ceeEEecC
Q 020565          241 KLKKELCEANALNASHVTDSLLERLIIGTREFTPVCAVVGGILGQEVIKAISCKG-EPLKN-FFFFDIMDG-KGVVEDVS  317 (324)
Q Consensus       241 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~p~~av~Ggi~aqEviK~itg~~-~pl~~-~~~~D~~~~-~~~~~~~~  317 (324)
                        ....|...++                   +.|++.++|.+++.|++|.++|.+ .|+.+ .+.||..++ ......+.
T Consensus       185 --~~~~c~~~gv-------------------~~~~~~~~~~~~~~~~~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (254)
T COG0476         185 --VPTSCDEAGV-------------------LGPLVGVVGSLQALEAIKLLTGIGLEPLIGRLLLYDALDMERFRTLKLR  243 (254)
T ss_pred             --cccccccCCc-------------------cccccchhhhHHHHHHHHHhcCCCccccccceeeeechhcccchhhhcc
Confidence              0013555555                   999999999999999999999999 88665 999999998 55555444


Q ss_pred             C
Q 020565          318 S  318 (324)
Q Consensus       318 ~  318 (324)
                      +
T Consensus       244 ~  244 (254)
T COG0476         244 R  244 (254)
T ss_pred             c
Confidence            4

>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2

Probab=100.00  E-value=3.9e-37  Score=282.28  Aligned_cols=259  Identities=19%  Similarity=0.293  Sum_probs=190.6

Q ss_pred             cEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEeeCC
Q 020565           33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGD  112 (324)
Q Consensus        33 ~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~~~  112 (324)
                      +|+|+|+||+|||++|||+++|||+|+|+|.|.++.+||+|||+++++|+   |++|+++++++++++||+++++.+...
T Consensus         1 kVlIVGaGGlG~EiaKnLal~Gvg~ItIvD~D~Ve~sNLnRQflf~~~dV---Gk~Kaevaa~~l~~lNp~v~V~~~~~~   77 (312)
T cd01489           1 KVLVVGAGGIGCELLKNLVLTGFGEIHIIDLDTIDLSNLNRQFLFRKKHV---GKSKAQVAKEAVLSFNPNVKIVAYHAN   77 (312)
T ss_pred             CEEEECCCHHHHHHHHHHHHhcCCeEEEEcCCCcchhhcCcCccCChhHc---CcHHHHHHHHHHHHHCCCCeEEEEecc
Confidence            69999999999999999999999999999999999999999999999999   999999999999999999999999888


Q ss_pred             CCC--CchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEeeecCceEEEEEecCcee-eee-cCccc---cccc
Q 020565          113 LSS--LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFVDLQNHK-YSK-QKIEE---TIEC  185 (324)
Q Consensus       113 ~~~--~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~~~~G~~g~v~~d~~~~~-~~~-~~~~~---~~~~  185 (324)
                      +.+  ...++++++|+||+|.|+.+.+.++|++|+.  +++|||.+++.|+.|+++++++..+ ..+ ..++.   ..-|
T Consensus        78 i~~~~~~~~f~~~~DvVv~a~Dn~~ar~~in~~c~~--~~ip~I~~gt~G~~G~v~vi~p~~t~c~~c~~~~~~~~~pic  155 (312)
T cd01489          78 IKDPDFNVEFFKQFDLVFNALDNLAARRHVNKMCLA--ADVPLIESGTTGFLGQVQVIKKGKTECYECQPKETPKTFPVC  155 (312)
T ss_pred             CCCccchHHHHhcCCEEEECCCCHHHHHHHHHHHHH--CCCCEEEEecCcceeEEEEEcCCCCCccCCCCCCCCCcCCcc
Confidence            875  3468899999999999999999999999999  9999999999999999999997432 222 11111   1112


Q ss_pred             cc-CCCChHHhhccCcccCC-CchhHH-HHHHH---HHHHHHHHhCCCCCC-------CCcccHH---HHHHHHHHHHHH
Q 020565          186 QL-RYPSFEEAISVPWRALP-RKASKL-YFALR---VLEQFEEAEGRSPGE-------ISIADLP---AVLKLKKELCEA  249 (324)
Q Consensus       186 ~~-~f~~~~e~l~~~~~~~~-~~~~~~-~~~~~---~l~~f~~~~~~~p~~-------~~~~d~~---~~~~~~~~~~~~  249 (324)
                      ++ .+|+.. .+...|.+.- .....+ +--++   ....|++.. +.|.+       .+.+|-.   -+.+.++..+..
T Consensus       156 tI~~~p~~~-~hci~~a~~~f~~~~~~f~~~i~~l~~~~~~w~~~-~~p~p~~~~~~~fdkDd~~~~~~v~~~a~lRa~~  233 (312)
T cd01489         156 TIRSTPSQP-IHCIVWAKSLFFLFNKVFKDDIERLLSMEELWKTR-KPPVPLSWKELTFDKDDQDALDFVAAAANLRSHV  233 (312)
T ss_pred             eecCCCCCC-EeehhHHHHHHHHHHHHHHHHHHHHHhhhhhhcCC-CCCCCCCCCCcCcCCCCHHHHHHHHHHHHHHHHH
Confidence            22 222211 1222333210 000000 00000   012233322 22321       2222222   233445666666


Q ss_pred             cCCCCCCCCHHHHHHHHh-cCCcccchhHHHHHHHHHHHHHHHhcCCCcccc
Q 020565          250 NALNASHVTDSLLERLII-GTREFTPVCAVVGGILGQEVIKAISCKGEPLKN  300 (324)
Q Consensus       250 ~~~~~~~v~~~~~~~~~~-~~~~l~p~~av~Ggi~aqEviK~itg~~~pl~~  300 (324)
                      ++++  .++...++.++. .-|.++.+.|+++|++..|++|+++++..-.++
T Consensus       234 f~I~--~~~~~~~k~i~g~IiPaiatTnaivag~~~~e~~k~~~~~~~~~~~  283 (312)
T cd01489         234 FGIP--MKSRFDIKQMAGNIIPAIATTNAIIAGLIVLEALKVLSGDKEQCRT  283 (312)
T ss_pred             cCCC--CCCHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHHhhhHHHhhh
Confidence            7775  477788899998 899999999999999999999999998766666

UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.

>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like

Probab=100.00  E-value=1.6e-36  Score=268.53  Aligned_cols=226  Identities=19%  Similarity=0.273  Sum_probs=181.9

Q ss_pred             cEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEeeCC
Q 020565           33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGD  112 (324)
Q Consensus        33 ~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~~~  112 (324)
                      ||+|+|+||+|||++|+|+++|+|+|+++|.|.|+.+||+|||||+++|+   |++|+++++++++++||+++++.+...
T Consensus         1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~Ve~sNLnRQflf~~~dv---Gk~Ka~va~~~l~~~np~v~i~~~~~~   77 (234)
T cd01484           1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQFLFRPKDI---GRPKSEVAAEAVNDRNPNCKVVPYQNK   77 (234)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcchhhccccCCChhhC---ChHHHHHHHHHHHHHCCCCEEEEEecc
Confidence            69999999999999999999999999999999999999999999999999   999999999999999999999999888


Q ss_pred             CCC---CchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEeeecCceEEEEEecCceeeeecCccccccc-ccC
Q 020565          113 LSS---LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFVDLQNHKYSKQKIEETIEC-QLR  188 (324)
Q Consensus       113 ~~~---~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~~~~G~~g~v~~d~~~~~~~~~~~~~~~~~-~~~  188 (324)
                      +.+   ...++++++|+||+|.|+.+.|.++|++|++  .++|+|++++.|+.|++.+..+..+          +| .|.
T Consensus        78 i~~~~~~~~~f~~~~DvVi~a~Dn~~aR~~ln~~c~~--~~iplI~~g~~G~~G~v~vi~p~~t----------~c~~C~  145 (234)
T cd01484          78 VGPEQDFNDTFFEQFHIIVNALDNIIARRYVNGMLIF--LIVPLIESGTEGFKGNAQVILPGMT----------ECIECT  145 (234)
T ss_pred             CChhhhchHHHHhCCCEEEECCCCHHHHHHHHHHHHH--cCCCEEEEcccCCceEEEEEcCCCC----------CCcccC
Confidence            843   3467899999999999999999999999999  9999999999999999987655311          22 222


Q ss_pred             CCChHHhhccCc---ccCCCchhHHHHHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHHHHHcCCCCCCCCHHHHHHH
Q 020565          189 YPSFEEAISVPW---RALPRKASKLYFALRVLEQFEEAEGRSPGEISIADLPAVLKLKKELCEANALNASHVTDSLLERL  265 (324)
Q Consensus       189 f~~~~e~l~~~~---~~~~~~~~~~~~~~~~l~~f~~~~~~~p~~~~~~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  265 (324)
                      +++-.+  ..|.   ...|+.  +.|....+...|+         .+....+-+.+.++...+.++++  .++..+++.+
T Consensus       146 ~~~~~~--~~p~Cti~~~P~~--~~hci~~a~~~~~---------d~~~~~~~i~~~a~~ra~~~~i~--~~~~~~~~~i  210 (234)
T cd01484         146 LYPPQK--NFPMCTIASMPRL--PEHCIEWARMLQW---------DDPEHIQFIFQASNERASQYNIR--GVTYFLTKGV  210 (234)
T ss_pred             CCCCCC--CCCccccCCCCCC--chHHHHHHHHHHh---------CCHHHHHHHHHHHHHHHHHcCCC--CcCHHHHHHH
Confidence            211111  1111   111221  2344444554444         12344556677788888888885  5888999999


Q ss_pred             Hh-cCCcccchhHHHHHHHHHHHH
Q 020565          266 II-GTREFTPVCAVVGGILGQEVI  288 (324)
Q Consensus       266 ~~-~~~~l~p~~av~Ggi~aqEvi  288 (324)
                      +. .-|.++.+.|+++|+++.|++
T Consensus       211 ~~~iipai~tTnaiia~~~~~e~~  234 (234)
T cd01484         211 AGRIIPAVATTNAVVAGVCALEVF  234 (234)
T ss_pred             hcCeecchhhHHHHHHHHHHHhhC
Confidence            98 999999999999999999873

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou

>KOG2015 consensus NEDD8-activating complex, catalytic component UBA3 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=5.1e-36  Score=265.99  Aligned_cols=280  Identities=20%  Similarity=0.281  Sum_probs=217.9

Q ss_pred             hHHHHHHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhC
Q 020565           22 GADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFN  101 (324)
Q Consensus        22 g~~~q~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~ln  101 (324)
                      +.+..+-|.+.+|||||+||+|||++|||+++|++.++++|-|.++.+||||||+|++.|+   |++||+++++.+++..
T Consensus        31 ~~e~l~~l~~~kiLviGAGGLGCElLKnLal~gF~~~~viDmDTId~sNLNRQFLF~~~Di---G~pKAqvAA~fvn~Rv  107 (422)
T KOG2015|consen   31 SEENLEFLQDCKILVIGAGGLGCELLKNLALSGFRQLHVIDMDTIDLSNLNRQFLFRESDI---GEPKAQVAAEFVNRRV  107 (422)
T ss_pred             CHHHHHHHhhCcEEEEccCcccHHHHHhHHhhccceeEEEeecceecccchhhhccccccc---CchhHHHHHHHHHhhC
Confidence            6788899999999999999999999999999999999999999999999999999999999   9999999999999999


Q ss_pred             CCCeEeEeeCCCCCCchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCC--------ccEEEeeecCceEEEEEecCcee
Q 020565          102 PMVRVSVEKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKR--------VAFYTVDCRDSCGEIFVDLQNHK  173 (324)
Q Consensus       102 p~v~v~~~~~~~~~~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~--------ip~i~~~~~G~~g~v~~d~~~~~  173 (324)
                      |.+.|..+..++.+...+|+++|++||++.|+.+.|+|||....++...        ||+|++++.|+.|++.+.++.++
T Consensus       108 p~~~v~~h~~kIqd~~~~FYk~F~~iicGLDsIeaRRwIN~mL~~l~~~g~~d~~~iiPlIDGGtEG~KG~arvI~Pg~T  187 (422)
T KOG2015|consen  108 PGCVVVPHRQKIQDKPISFYKRFDLIICGLDSIEARRWINGMLVRLKLEGNYDISSIIPLIDGGTEGFKGHARVIYPGIT  187 (422)
T ss_pred             CCcEEeeeecchhcCCHHHHhhhceEEecccchhHHHHHHHHHHHHHhccCCCccceeeeeecCcccccceeEEEecCcc
Confidence            9999999999999999999999999999999999999999876543222        79999999999999998877543


Q ss_pred             eeecCccccccccc-CCCChHHhhccCcc---cCCCchhHHHHHHHHHHHHHHHhCC-CCCC-CCcccHHHHHHHHHHHH
Q 020565          174 YSKQKIEETIECQL-RYPSFEEAISVPWR---ALPRKASKLYFALRVLEQFEEAEGR-SPGE-ISIADLPAVLKLKKELC  247 (324)
Q Consensus       174 ~~~~~~~~~~~~~~-~f~~~~e~l~~~~~---~~~~~~~~~~~~~~~l~~f~~~~~~-~p~~-~~~~d~~~~~~~~~~~~  247 (324)
                      -       +..|.+ .||+-   .+.|..   ++|+-+ ....=+..+.+|.+...- .|.. .+.++.+-+++-+.+..
T Consensus       188 a-------CieCtldlyppq---vs~P~CTiAntPRlp-EHciEyv~liqwpe~~~~g~~~~gdd~~hI~wi~er~~eRA  256 (422)
T KOG2015|consen  188 A-------CIECTLDLYPPQ---VSYPMCTIANTPRLP-EHCIEYVKLIQWPELNPFGVPLDGDDPEHIEWIVERSNERA  256 (422)
T ss_pred             H-------HHHhHHhhcCcc---cCcccceecCCCCCc-hHhhhhhhhhcchhhCccCCCCCCCCHHHHHHHHHHHHHHh
Confidence            2       223422 34432   122322   233222 222223344455554322 2211 12233333444444444


Q ss_pred             HHcCCCCCCCCHHHHHHHHh-cCCcccchhHHHHHHHHHHHHHHHhcCCCcccceEEEeccCCce-eEEecC
Q 020565          248 EANALNASHVTDSLLERLII-GTREFTPVCAVVGGILGQEVIKAISCKGEPLKNFFFFDIMDGKG-VVEDVS  317 (324)
Q Consensus       248 ~~~~~~~~~v~~~~~~~~~~-~~~~l~p~~av~Ggi~aqEviK~itg~~~pl~~~~~~D~~~~~~-~~~~~~  317 (324)
                      .+..  ...|+..++..+.+ .-|.++.++|++++.+|.|++|++|.-..|++||+.|++.++-. ..+.+.
T Consensus       257 ~ef~--I~gv~~~lvtGvvK~IIPaVasTNA~IAA~Ca~ea~Kl~t~~~~~~~Nym~~n~~eG~ytytf~~e  326 (422)
T KOG2015|consen  257 NEFN--ITGVTRRLVTGVVKRIIPAVASTNAVIAAVCATEALKLLTATDDPLDNYMNYNAEEGIYTYTFLLE  326 (422)
T ss_pred             hhcc--cccchHHhhhhhHHhhcchhhhhhHHHHHHHHHHHHHHHHhcchhhhhheeeecccceeEEEeeec
Confidence            4343  45688888888888 88999999999999999999999999999999999999999843 555554

>PRK14852 hypothetical protein; Provisional

Probab=100.00  E-value=1.3e-36  Score=308.76  Aligned_cols=247  Identities=15%  Similarity=0.206  Sum_probs=190.4

Q ss_pred             HHHhHHHHHhhhHHHHHHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHH
Q 020565           11 TALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIA   90 (324)
Q Consensus        11 ~~ry~Rqi~l~g~~~q~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka   90 (324)
                      ..||+||+++||.++|++|++++|+|+||||+|++++++|+++|||+|+|+|+|.|+.+|||||++++.+|+   |++|+
T Consensus       312 ~~ry~Rqi~lig~e~Q~kL~~srVlVvGlGGlGs~ia~~LAraGVG~I~L~D~D~Ve~SNLNRQ~l~~~~dI---G~~Ka  388 (989)
T PRK14852        312 DIAFSRNLGLVDYAGQRRLLRSRVAIAGLGGVGGIHLMTLARTGIGNFNLADFDAYSPVNLNRQYGASIASF---GRGKL  388 (989)
T ss_pred             HHHhhchHhhcCHHHHHHHhcCcEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEecccccccccCCChhhC---CChHH
Confidence            368999999999999999999999999999999999999999999999999999999999999999999999   99999


Q ss_pred             HHHHHHHHhhCCCCeEeEeeCCCCC-CchhhcCCccEEEEcCCCH--HHHHHHHHHHHhccCCccEEEeeecCceEEEEE
Q 020565           91 EVCCDSLKDFNPMVRVSVEKGDLSS-LDGEFYDKFDVVVVSCCSV--TTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFV  167 (324)
Q Consensus        91 ~~~~~~l~~lnp~v~v~~~~~~~~~-~~~~~~~~~diVi~~~~~~--~~~~~l~~~~~~~~~~ip~i~~~~~G~~g~v~~  167 (324)
                      ++++++++++||+++|+++...+++ +.+++++++|+||+|+|++  +.+..+++.|++  ++||+|++++.|+.|++++
T Consensus       389 evaa~~l~~INP~v~I~~~~~~I~~en~~~fl~~~DiVVDa~D~~~~~~rr~l~~~c~~--~~IP~I~ag~~G~~g~v~v  466 (989)
T PRK14852        389 DVMTERALSVNPFLDIRSFPEGVAAETIDAFLKDVDLLVDGIDFFALDIRRRLFNRALE--LGIPVITAGPLGYSCALLV  466 (989)
T ss_pred             HHHHHHHHHHCCCCeEEEEecCCCHHHHHHHhhCCCEEEECCCCccHHHHHHHHHHHHH--cCCCEEEeeccccCeeEEE
Confidence            9999999999999999999888865 5688999999999999974  467788899999  9999999999999999986


Q ss_pred             ecCceeeeecCcccccccccCCCChHHhhccCcccCCCchhHHHHHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHHH
Q 020565          168 DLQNHKYSKQKIEETIECQLRYPSFEEAISVPWRALPRKASKLYFALRVLEQFEEAEGRSPGEISIADLPAVLKLKKELC  247 (324)
Q Consensus       168 d~~~~~~~~~~~~~~~~~~~~f~~~~e~l~~~~~~~~~~~~~~~~~~~~l~~f~~~~~~~p~~~~~~d~~~~~~~~~~~~  247 (324)
                      ..+.    .       +|      +++...     ++...+..+-+++.+.      +.-|..       -    -    
T Consensus       467 ~~p~----~-------~~------~~~~f~-----~~~~~p~~~~~~~~~l------~~~p~~-------~----~----  503 (989)
T PRK14852        467 FMPG----G-------MN------FDSYFG-----IDDDTPPMEGYLRFGM------GLAPRP-------A----H----  503 (989)
T ss_pred             EcCC----C-------CC------HHHhCC-----CCCCCchHhhhhhhhc------cCCcch-------h----h----
Confidence            3321    0       11      221111     0011122222222100      111100       0    0    


Q ss_pred             HHcCCCCCCCCHHHHHHHHh-cCCcccchhHHHHHHHHHHHHHHHhcCCCcc--cceEEEeccCCcee
Q 020565          248 EANALNASHVTDSLLERLII-GTREFTPVCAVVGGILGQEVIKAISCKGEPL--KNFFFFDIMDGKGV  312 (324)
Q Consensus       248 ~~~~~~~~~v~~~~~~~~~~-~~~~l~p~~av~Ggi~aqEviK~itg~~~pl--~~~~~~D~~~~~~~  312 (324)
                        .    ..++...+ .+.. ..|++++-|.+-||++|.|++|++.|++.-.  .-++.||+..+...
T Consensus       504 --~----~~~~~~~~-~l~~~~~Ps~~~~~~l~a~~~~~~~~killg~~~~~~~p~~~qfd~~~~~~~  564 (989)
T PRK14852        504 --L----GYMDRRFV-SLHDRRGPSLDIACHLCAGMAATEAVRILLHRRGIRPVPYFRQFDPLTGRHV  564 (989)
T ss_pred             --h----cccCcccc-cccccCCCchHHHHHHhHHHHHHHHHHHHhCCCccccCcchhccchhhcccc
Confidence              0    00111111 2223 7889999999999999999999999996543  35788999887543

>PRK14851 hypothetical protein; Provisional

Probab=100.00  E-value=3.8e-36  Score=301.18  Aligned_cols=256  Identities=19%  Similarity=0.249  Sum_probs=198.3

Q ss_pred             CHHHHHHhHHHHHhhhHHHHHHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCC
Q 020565            7 TEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGG   86 (324)
Q Consensus         7 ~~~e~~ry~Rqi~l~g~~~q~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G   86 (324)
                      .+.+.+||+||+++||.++|++|++++|+|+||||+||+++++|+++|||+|+|+|+|.|+.+|||||++++.+|+   |
T Consensus        19 ~~~~~~ry~R~~~l~g~e~Q~kL~~~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D~ve~sNLNRQ~~~~~~dv---G   95 (679)
T PRK14851         19 AEYREAAFSRNIGLFTPGEQERLAEAKVAIPGMGGVGGVHLITMVRTGIGRFHIADFDQFEPVNVNRQFGARVPSF---G   95 (679)
T ss_pred             HHHHHHHhhhhHHhcCHHHHHHHhcCeEEEECcCHHHHHHHHHHHHhCCCeEEEEcCCEecccccccCcCcChhhC---C
Confidence            4556799999999999999999999999999999999999999999999999999999999999999999999999   9


Q ss_pred             ccHHHHHHHHHHhhCCCCeEeEeeCCCCC-CchhhcCCccEEEEcCCC--HHHHHHHHHHHHhccCCccEEEeeecCceE
Q 020565           87 KTIAEVCCDSLKDFNPMVRVSVEKGDLSS-LDGEFYDKFDVVVVSCCS--VTTKKLINEKCRKLSKRVAFYTVDCRDSCG  163 (324)
Q Consensus        87 ~~ka~~~~~~l~~lnp~v~v~~~~~~~~~-~~~~~~~~~diVi~~~~~--~~~~~~l~~~~~~~~~~ip~i~~~~~G~~g  163 (324)
                      ++|+++++++++++||.++|+.+...+++ +..++++++|+||+|.|+  .+.+..+++.|++  ++||+|++++.|+.|
T Consensus        96 ~~Kv~v~~~~l~~inP~~~I~~~~~~i~~~n~~~~l~~~DvVid~~D~~~~~~r~~l~~~c~~--~~iP~i~~g~~G~~g  173 (679)
T PRK14851         96 RPKLAVMKEQALSINPFLEITPFPAGINADNMDAFLDGVDVVLDGLDFFQFEIRRTLFNMARE--KGIPVITAGPLGYSS  173 (679)
T ss_pred             CHHHHHHHHHHHHhCCCCeEEEEecCCChHHHHHHHhCCCEEEECCCCCcHHHHHHHHHHHHH--CCCCEEEeecccccc
Confidence            99999999999999999999999998886 457889999999999997  4678899999999  999999999999999


Q ss_pred             EEEEecCceeeeecCcccccccccCCCChHHhhccCcccCCCchhHHHHHHHHHHHHHHHhCCCCCCCCcccHHHHHHHH
Q 020565          164 EIFVDLQNHKYSKQKIEETIECQLRYPSFEEAISVPWRALPRKASKLYFALRVLEQFEEAEGRSPGEISIADLPAVLKLK  243 (324)
Q Consensus       164 ~v~~d~~~~~~~~~~~~~~~~~~~~f~~~~e~l~~~~~~~~~~~~~~~~~~~~l~~f~~~~~~~p~~~~~~d~~~~~~~~  243 (324)
                      ++++..+.    .             +.+++.....-. ++    ..--.+|    |  .+|-.|...            
T Consensus       174 ~~~~~~p~----~-------------~~~~~~~~~~~~-~~----~~~~~~~----~--~~g~~p~~~------------  213 (679)
T PRK14851        174 AMLVFTPQ----G-------------MGFDDYFNIGGK-MP----EEQKYLR----F--AMGLAPRPT------------  213 (679)
T ss_pred             eEEEEcCC----C-------------CCHhHhccCCCC-CC----hHHHHHH----H--HhcCCCcch------------
Confidence            99853321    0             111111111000 00    0000000    0  112222110            


Q ss_pred             HHHHHHcCCCCCCCCHHHHHHHHh-cCCcccchhHHHHHHHHHHHHHHHhcCCCc--ccceEEEeccCCceeEEecC
Q 020565          244 KELCEANALNASHVTDSLLERLII-GTREFTPVCAVVGGILGQEVIKAISCKGEP--LKNFFFFDIMDGKGVVEDVS  317 (324)
Q Consensus       244 ~~~~~~~~~~~~~v~~~~~~~~~~-~~~~l~p~~av~Ggi~aqEviK~itg~~~p--l~~~~~~D~~~~~~~~~~~~  317 (324)
                               --..+|...+ .+.. ..+.+..-|...+|+.+.|++|+|.|++.-  ..++++||+..+....-.++
T Consensus       214 ---------~~~~~d~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~  280 (679)
T PRK14851        214 ---------HIKYMDLSKV-DLKGGKGPSLNIACQLCSGMAGTEAVRIILGKGGLRPVPCYLQFDPFLQKLRKGRLS  280 (679)
T ss_pred             ---------hhccCcHhhc-CCccCcCCCccHHHHhhhhhHHHHHHHHhhcCCeeeccchhhhcchhhcceeEEEee
Confidence                     0012333344 3444 667788889999999999999999988743  45899999988876555544

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=100.00  E-value=2e-35  Score=259.09  Aligned_cols=149  Identities=17%  Similarity=0.234  Sum_probs=136.4

Q ss_pred             HHhHHHHHhhhHHHHHHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHH
Q 020565           12 ALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAE   91 (324)
Q Consensus        12 ~ry~Rqi~l~g~~~q~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~   91 (324)
                      +.|.++...||.++|++|++++|+|+|+||+|++++++|+++||++|+++|.|.|+.+||+||+++ ++|+   |++|++
T Consensus         9 ~~~~~~~~~~g~~~q~~L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~-~~dv---G~~Ka~   84 (212)
T PRK08644          9 EFEAMLASRHTPKLLEKLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYF-ISQI---GMPKVE   84 (212)
T ss_pred             HHHHHHHhhcCHHHHHHHhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEee-hhhC---CChHHH
Confidence            466777788999999999999999999999999999999999999999999999999999999876 7789   999999


Q ss_pred             HHHHHHHhhCCCCeEeEeeCCCCC-CchhhcCCccEEEEcCCCHHHHHHHHHHHHhccC-CccEEEeeecCceEEEE
Q 020565           92 VCCDSLKDFNPMVRVSVEKGDLSS-LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSK-RVAFYTVDCRDSCGEIF  166 (324)
Q Consensus        92 ~~~~~l~~lnp~v~v~~~~~~~~~-~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~-~ip~i~~~~~G~~g~v~  166 (324)
                      +++++|+++||+++++.+...+++ ...++++++|+||+|+|+++.+..+++.|++  + ++|+|.+...|.+|++.
T Consensus        85 ~a~~~l~~lnp~v~v~~~~~~i~~~~~~~~~~~~DvVI~a~D~~~~r~~l~~~~~~--~~~~p~I~~~~~~~~~~~~  159 (212)
T PRK08644         85 ALKENLLEINPFVEIEAHNEKIDEDNIEELFKDCDIVVEAFDNAETKAMLVETVLE--HPGKKLVAASGMAGYGDSN  159 (212)
T ss_pred             HHHHHHHHHCCCCEEEEEeeecCHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHH--hCCCCEEEeehhhccCCce
Confidence            999999999999999999888775 3457889999999999999999999999999  8 99999997777666543

>TIGR03603 cyclo_dehy_ocin bacteriocin biosynthesis cyclodehydratase, SagC family

Probab=100.00  E-value=4.6e-35  Score=270.76  Aligned_cols=233  Identities=13%  Similarity=0.085  Sum_probs=185.3

Q ss_pred             CCCHHHHHHhHHHHHh---hh-HHHHHHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCC
Q 020565            5 ELTEQETALYDRQIRV---WG-ADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPD   80 (324)
Q Consensus         5 ~l~~~e~~ry~Rqi~l---~g-~~~q~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~   80 (324)
                      +|++.+.+||+||+.+   || .++|++|++++|+   |||+|+.++.+|++ |||+|+|+|+|.|+.+||+  ++|+++
T Consensus        46 ~l~~~~~~ry~r~l~l~~~~~~~~~Q~kL~~s~Vl---~GGLGs~va~~La~-GVg~L~ivD~D~Ve~SNL~--~L~~~~  119 (318)
T TIGR03603        46 TLTKFNLITIIDNLTLKPMLIVEDYQKHLKKSKVL---LGKFGANIAYNLCN-NVGALFISDKTYFQETAEI--DLYSKE  119 (318)
T ss_pred             ccCHHHHHHHHHHhcCccccCcHHHHHHHhhCeee---cccchHHHHHHHhC-CCCEEEEEcCCEechhhHH--HHhChh
Confidence            5888999999999999   56 4589999999999   99999999999999 9999999999999999999  999999


Q ss_pred             CcccCCccHHHHHHHHHHhhCCCCeEeEeeCCCCCCchhhcCCccEEEEcCCCHHHHHH--HHHHHHhccCCccEEEeee
Q 020565           81 ENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEFYDKFDVVVVSCCSVTTKKL--INEKCRKLSKRVAFYTVDC  158 (324)
Q Consensus        81 di~~~G~~ka~~~~~~l~~lnp~v~v~~~~~~~~~~~~~~~~~~diVi~~~~~~~~~~~--l~~~~~~~~~~ip~i~~~~  158 (324)
                      |+   |++|+++++++|.++||.++++..        .++++++|+||+|+|++.++..  +|++|.+  .++|||.++.
T Consensus       120 di---G~~K~~~a~~~L~~lnp~v~i~~~--------~~li~~~DlVid~tDn~~~r~L~~iN~ac~~--~~~PlV~gav  186 (318)
T TIGR03603       120 FI---LKKDIRDLTSNLDALELTKNVDEL--------KDLLKDYNYIIICTEHSNISLLRGLNKLSKE--TKKPNTIAFI  186 (318)
T ss_pred             hc---CcHHHHHHHHHHHHhCCCCEEeeH--------HHHhCCCCEEEECCCCccHhHHHHHHHHHHH--HCCCEEEEEE
Confidence            99   999999999999999999999763        4678899999999999999865  9999999  9999999999


Q ss_pred             cCceEEEEEecCceeeeecCccccccc-ccCCCChHHhhccCcccCCCchhHHHHHHHHHHHHHHHhCCCCCCCCcccHH
Q 020565          159 RDSCGEIFVDLQNHKYSKQKIEETIEC-QLRYPSFEEAISVPWRALPRKASKLYFALRVLEQFEEAEGRSPGEISIADLP  237 (324)
Q Consensus       159 ~G~~g~v~~d~~~~~~~~~~~~~~~~~-~~~f~~~~e~l~~~~~~~~~~~~~~~~~~~~l~~f~~~~~~~p~~~~~~d~~  237 (324)
                      .|+.|++...++.          ..+| +|.||.......                          |..+|... ....+
T Consensus       187 ~g~~Gqv~~~~P~----------~t~C~~Cl~~r~~~~~~--------------------------~~~~~~~~-~~~~~  229 (318)
T TIGR03603       187 DGPFVFITCTLPP----------ETGCFECLERRLLSRLD--------------------------WRLYGVFT-EYLVK  229 (318)
T ss_pred             ccCEEEEEEEeCC----------CCCcHHHccchhhcccc--------------------------cccccccc-cccCC
Confidence            9999998853321          1255 454442211000                          00001000 00000


Q ss_pred             HHHHHHHHHHHHcCCCCCCCCHHHHHHHHhcCCcccchhHHHHHHHHHHHHHHHhcCCCc-ccc-eEEEeccCCceeEEe
Q 020565          238 AVLKLKKELCEANALNASHVTDSLLERLIIGTREFTPVCAVVGGILGQEVIKAISCKGEP-LKN-FFFFDIMDGKGVVED  315 (324)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~p~~av~Ggi~aqEviK~itg~~~p-l~~-~~~~D~~~~~~~~~~  315 (324)
                           ....|..                   .+.++|+++++|+++|.|++ +++|.+.| +.+ .+.||..+.+.....
T Consensus       230 -----~~~~~~~-------------------~gv~gp~~giigsl~a~Eai-~i~g~g~~~l~g~ll~id~~t~~~~~~~  284 (318)
T TIGR03603       230 -----AENNVST-------------------AELIFPLLNIKKNLVVSEIF-AIGSLGTSKFEGRLLSINLPTLEIQFQD  284 (318)
T ss_pred             -----CCCCCcc-------------------CCeehhHHHHHHHHHHHHHH-HHhCCCCcccCCeEEEEECCCCeEEEEe
Confidence                 0001222                   23399999999999999999 99998886 444 899999999999998


Q ss_pred             cCC
Q 020565          316 VSS  318 (324)
Q Consensus       316 ~~~  318 (324)
                      +.+
T Consensus       285 l~k  287 (318)
T TIGR03603       285 ILK  287 (318)
T ss_pred             cCC
Confidence            864

Members of this protein family include enzymes related to SagC, a cyclodehydratase involved in the biosynthesis of streptolysin S in Streptococcus pyogenes from the protoxin polypeptide (product of the sagA gene). This protein family serves as a marker for widely distributed prokaryotic systems for making a general class of heterocycle-containing bacteriocins. Note that this model does not find all possible examples of bacteriocin biosynthesis cyclodehydratases, an in particular misses the E. coli plasmid protein McbB of microcin B17 biosynthesis.

>PTZ00245 ubiquitin activating enzyme; Provisional

Probab=100.00  E-value=2.2e-34  Score=250.55  Aligned_cols=122  Identities=30%  Similarity=0.488  Sum_probs=113.0

Q ss_pred             CHHHHHHhHHHHHhhhHHHHHHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCC
Q 020565            7 TEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGG   86 (324)
Q Consensus         7 ~~~e~~ry~Rqi~l~g~~~q~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G   86 (324)
                      +++|.+||||||++||.++|++|++++|+|+|+||+|++++|||+++|||+|+|+|+|.|+.+||+|||++++ ++   |
T Consensus         2 s~~E~~RYsRQIrLwG~EgQ~KL~~SrVLVVG~GGLGsEVAKnLaLAGVGsItIvDdD~Ve~SNL~RQfl~~~-dv---G   77 (287)
T PTZ00245          2 RDAEAVRYDRQIRLWGKSTQQQLMHTSVALHGVAGAAAEAAKNLVLAGVRAVAVADEGLVTDADVCTNYLMQG-EA---G   77 (287)
T ss_pred             CHHHHHHHhHHHHHhCHHHHHHHhhCeEEEECCCchHHHHHHHHHHcCCCeEEEecCCccchhhhcccccccc-cc---C
Confidence            5788999999999999999999999999999999999999999999999999999999999999999999997 67   9


Q ss_pred             ccHHHHHHHHHHhhCCCCeEeEeeCCCCCCchhhcCCccEEEEcCCCHHHH
Q 020565           87 KTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEFYDKFDVVVVSCCSVTTK  137 (324)
Q Consensus        87 ~~ka~~~~~~l~~lnp~v~v~~~~~~~~~~~~~~~~~~diVi~~~~~~~~~  137 (324)
                      ++|+++++++|+++||+|+|+.+...++.     -.+|++||.+..+.+..
T Consensus        78 k~KAeaAa~~L~eLNP~V~V~~i~~rld~-----~n~fqvvV~~~~~le~a  123 (287)
T PTZ00245         78 GTRGARALGALQRLNPHVSVYDAVTKLDG-----SSGTRVTMAAVITEEDA  123 (287)
T ss_pred             CcHHHHHHHHHHHHCCCcEEEEcccccCC-----cCCceEEEEEcccHHHH
Confidence            99999999999999999999998877654     33889999988876654

>TIGR01408 Ube1 ubiquitin-activating enzyme E1

Probab=100.00  E-value=1.1e-34  Score=300.81  Aligned_cols=156  Identities=24%  Similarity=0.448  Sum_probs=148.2

Q ss_pred             HHHhHHHHHhhhHHHHHHHhcCcEEEEcCchhHHHHHHHHHHhCC-----CcEEEEcCCccccccCCCCcccCCCCcccC
Q 020565           11 TALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGV-----GSLTLMDDRVVTEEAWSANFLIPPDENVYG   85 (324)
Q Consensus        11 ~~ry~Rqi~l~g~~~q~~l~~~~VliiG~g~lGsei~k~L~~~Gv-----~~i~lvD~d~v~~~nl~r~~l~~~~di~~~   85 (324)
                      .+|||||+++||.++|++|++++|+|+||||+|||++|||+++||     |+|+|+|.|.|+.+||+|||||+.+||   
T Consensus       399 ~~RYdrqi~l~G~~~Q~kL~~~kVlvvGaGGlG~e~lknLal~Gv~~~~~G~i~IvD~D~Ve~SNLnRQfLf~~~dI---  475 (1008)
T TIGR01408       399 GDRYDAQIAVFGDTFQQKLQNLNIFLVGCGAIGCEMLKNFALMGVGTGKKGMITVTDPDLIEKSNLNRQFLFRPHHI---  475 (1008)
T ss_pred             hhhhHHHHHHcCHHHHHHHhhCcEEEECCChHHHHHHHHHHHhCCCcCCCCeEEEECCCEecccccCcCcCCChhHc---
Confidence            479999999999999999999999999999999999999999999     899999999999999999999999999   


Q ss_pred             CccHHHHHHHHHHhhCCCCeEeEeeCCCCC-----CchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEeeecC
Q 020565           86 GKTIAEVCCDSLKDFNPMVRVSVEKGDLSS-----LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRD  160 (324)
Q Consensus        86 G~~ka~~~~~~l~~lnp~v~v~~~~~~~~~-----~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~~~~G  160 (324)
                      |++|+++++++++++||+++++++...+..     ...++++++|+||+|.|+.++|.++|+.|++  +++|+|.+++.|
T Consensus       476 Gk~Ka~vaa~~l~~~Np~v~I~~~~~~v~~~~e~i~~~~f~~~~dvVi~alDn~~aR~~vn~~c~~--~~iPli~~gt~G  553 (1008)
T TIGR01408       476 GKPKSYTAADATLKINPQIKIDAHQNRVGPETETIFNDEFYEKLDVVINALDNVEARRYVDSRCLA--FLKPLLESGTLG  553 (1008)
T ss_pred             CcHHHHHHHHHHHHHCCCCEEEEEEeecChhhhhhhhHHHhhCCCEEEECCCCHHHHHHHHHHHHH--cCCCEEEEeccC
Confidence            999999999999999999999999887753     2357889999999999999999999999999  999999999999


Q ss_pred             ceEEEEEecCc
Q 020565          161 SCGEIFVDLQN  171 (324)
Q Consensus       161 ~~g~v~~d~~~  171 (324)
                      +.|++.+..+.
T Consensus       554 ~~G~v~v~ip~  564 (1008)
T TIGR01408       554 TKGNTQVVVPH  564 (1008)
T ss_pred             ceeeEEEEeCC
Confidence            99999987764

This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=100.00  E-value=1.3e-34  Score=260.28  Aligned_cols=151  Identities=22%  Similarity=0.337  Sum_probs=139.5

Q ss_pred             CCCHHHHHHhHHHHHhhhHHHHHHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCccc
Q 020565            5 ELTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVY   84 (324)
Q Consensus         5 ~l~~~e~~ry~Rqi~l~g~~~q~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~   84 (324)
                      .||+++.+||+||.++||.++|++|++++|+|+|+||+||+++++|+++||++|+|+|.|.++.+|++||+++..+++  
T Consensus         4 ~~~~~~~~rf~R~~~L~G~e~~~kL~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V~~sNlnRQ~~~~~~~v--   81 (268)
T PRK15116          4 VISDAWRQRFGGTARLYGEKALQLFADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNV--   81 (268)
T ss_pred             CCCHHHHHHHhhHHHHhCHHHHHHhcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEecccccccccccChhhc--
Confidence            388989999999999999999999999999999999999999999999999999999999999999999999999999  


Q ss_pred             CCccHHHHHHHHHHhhCCCCeEeEeeCCCCC-Cchhhc-CCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEeeecC
Q 020565           85 GGKTIAEVCCDSLKDFNPMVRVSVEKGDLSS-LDGEFY-DKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRD  160 (324)
Q Consensus        85 ~G~~ka~~~~~~l~~lnp~v~v~~~~~~~~~-~~~~~~-~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~~~~G  160 (324)
                       |++|+++++++++++||+++++.+...++. ...+++ .+||+||+|.|++..+..|+++|++  +++|+|.++..|
T Consensus        82 -G~~Kve~~~~rl~~INP~~~V~~i~~~i~~e~~~~ll~~~~D~VIdaiD~~~~k~~L~~~c~~--~~ip~I~~gGag  156 (268)
T PRK15116         82 -GLAKAEVMAERIRQINPECRVTVVDDFITPDNVAEYMSAGFSYVIDAIDSVRPKAALIAYCRR--NKIPLVTTGGAG  156 (268)
T ss_pred             -ChHHHHHHHHHHHhHCCCcEEEEEecccChhhHHHHhcCCCCEEEEcCCCHHHHHHHHHHHHH--cCCCEEEECCcc
Confidence             999999999999999999999998776653 344555 4799999999999999999999999  999999875444

>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2

Probab=100.00  E-value=5.9e-33  Score=263.75  Aligned_cols=133  Identities=23%  Similarity=0.422  Sum_probs=126.2

Q ss_pred             cEEEEcCchhHHHHHHHHHHhCC-----CcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEe
Q 020565           33 HILVCGMKGTVAEFCKNIVLAGV-----GSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS  107 (324)
Q Consensus        33 ~VliiG~g~lGsei~k~L~~~Gv-----~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~  107 (324)
                      +|+|||+||+|||++|||+++||     |+|+|+|.|.|+.+||+||||++++||   |++|+++++++++++||+++++
T Consensus         1 kVlvVGaGGlGcE~lKnLal~Gv~~g~~G~I~IvD~D~Ie~SNLnRQfLf~~~dI---Gk~Ka~vAa~~l~~lNp~v~I~   77 (435)
T cd01490           1 KVFLVGAGAIGCELLKNFALMGVGTGESGEITVTDMDNIEKSNLNRQFLFRPHDV---GKPKSEVAAAAVKAMNPDLKIT   77 (435)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCcCCCCeEEEECCCCccccccCcCccCChhHc---CcHHHHHHHHHHHHHCCCCEEE
Confidence            69999999999999999999999     999999999999999999999999999   9999999999999999999999


Q ss_pred             EeeCCCCC-----CchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEeeecCceEEEEEecC
Q 020565          108 VEKGDLSS-----LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFVDLQ  170 (324)
Q Consensus       108 ~~~~~~~~-----~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~~~~G~~g~v~~d~~  170 (324)
                      .+...+.+     ...++++++|+||+|.|+.++|..+|+.|+.  .++|+|.+++.|+.|++.+.++
T Consensus        78 a~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~vn~~C~~--~~iPli~~gt~G~~G~v~v~iP  143 (435)
T cd01490          78 ALQNRVGPETEHIFNDEFWEKLDGVANALDNVDARMYVDRRCVY--YRKPLLESGTLGTKGNTQVVIP  143 (435)
T ss_pred             EEecccChhhhhhhhHHHhcCCCEEEECCCCHHHHHHHHHHHHH--hCCCEEEEecccceeEEEEEeC
Confidence            99887753     2357889999999999999999999999999  9999999999999999988776

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.

>PRK07877 hypothetical protein; Provisional

Probab=100.00  E-value=8.1e-33  Score=277.83  Aligned_cols=247  Identities=19%  Similarity=0.221  Sum_probs=185.2

Q ss_pred             CCHHHH--HHhHHHHHhhhHHHHHHHhcCcEEEEcCchhHHHHHHHHHHhCC-CcEEEEcCCccccccCCCCcccCCCCc
Q 020565            6 LTEQET--ALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGV-GSLTLMDDRVVTEEAWSANFLIPPDEN   82 (324)
Q Consensus         6 l~~~e~--~ry~Rqi~l~g~~~q~~l~~~~VliiG~g~lGsei~k~L~~~Gv-~~i~lvD~d~v~~~nl~r~~l~~~~di   82 (324)
                      |++.+.  +||+||+.+||.++|++|++++|+|+||| +||.++.+|+++|| |+|+|+|.|.|+.+||||| +++.+|+
T Consensus        80 ~~~~~~~~~r~~Rn~~~ig~~~Q~~L~~~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq-~~~~~di  157 (722)
T PRK07877         80 LGPREFRAVRLDRNRNKITAEEQERLGRLRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRV-PAGVFDL  157 (722)
T ss_pred             CCHHHhhHHHhhchhhhCCHHHHHHHhcCCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccc-cCChhhc
Confidence            667776  89999999999999999999999999997 99999999999996 9999999999999999998 6899999


Q ss_pred             ccCCccHHHHHHHHHHhhCCCCeEeEeeCCCCC-CchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEeeecCc
Q 020565           83 VYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSS-LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDS  161 (324)
Q Consensus        83 ~~~G~~ka~~~~~~l~~lnp~v~v~~~~~~~~~-~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~~~~G~  161 (324)
                         |++|+++++++|+++||+++|+++...+++ +.+++++++|+||+|+|+++++..+|+.|++  ++||+|+++..+ 
T Consensus       158 ---G~~Kv~~a~~~l~~inp~i~v~~~~~~i~~~n~~~~l~~~DlVvD~~D~~~~R~~ln~~a~~--~~iP~i~~~~~~-  231 (722)
T PRK07877        158 ---GVNKAVVAARRIAELDPYLPVEVFTDGLTEDNVDAFLDGLDVVVEECDSLDVKVLLREAARA--RRIPVLMATSDR-  231 (722)
T ss_pred             ---ccHHHHHHHHHHHHHCCCCEEEEEeccCCHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHH--cCCCEEEEcCCC-
Confidence               999999999999999999999999999986 5678899999999999999999999999999  999999988655 


Q ss_pred             eEEEEEecCceeeeecCccccccc-ccCCCChHHhhccCcccCCCchhHHHHHHHHHHHHHHHhCCCCCCCCcccHHHHH
Q 020565          162 CGEIFVDLQNHKYSKQKIEETIEC-QLRYPSFEEAISVPWRALPRKASKLYFALRVLEQFEEAEGRSPGEISIADLPAVL  240 (324)
Q Consensus       162 ~g~v~~d~~~~~~~~~~~~~~~~~-~~~f~~~~e~l~~~~~~~~~~~~~~~~~~~~l~~f~~~~~~~p~~~~~~d~~~~~  240 (324)
                       |++.+.  .|.+..     ..|| +|.|+.+....   +..++.                  ..+.|.....-      
T Consensus       232 -g~~~~e--~~~~~p-----~~pc~~cl~~~~~~~~---~~~~~~------------------~~~~p~~~~~~------  276 (722)
T PRK07877        232 -GLLDVE--RFDLEP-----DRPILHGLLGDIDAAK---LAGLST------------------KDKVPHVLRIL------  276 (722)
T ss_pred             -CCcCcc--eeeeCC-----CCceeeccCCCCChhh---hccCCh------------------hccCcceeeec------
Confidence             766310  111111     2366 66666542211   000000                  00111000000      


Q ss_pred             HHHHHHHHHcCCCCCCCCHHHHHHHH----h--cCCcccchhHHHHHHHHHHHHHHHhcCCCcccceEEEeccC
Q 020565          241 KLKKELCEANALNASHVTDSLLERLI----I--GTREFTPVCAVVGGILGQEVIKAISCKGEPLKNFFFFDIMD  308 (324)
Q Consensus       241 ~~~~~~~~~~~~~~~~v~~~~~~~~~----~--~~~~l~p~~av~Ggi~aqEviK~itg~~~pl~~~~~~D~~~  308 (324)
                                  ....++..+...+.    .  ..|++++-+++-||+++..+.|++.|+..| .+-++.|..+
T Consensus       277 ------------~~~~~~~r~~~s~~~~~~~~~~~pql~~~~~~~~~~~~~~~~~i~l~~~~~-sgr~~~~~~~  337 (722)
T PRK07877        277 ------------DAEALSARMAASLVEVDQTLSTWPQLASDVVLGAAAVAEAVRRIGLGEPLE-SGRVRVDLDE  337 (722)
T ss_pred             ------------cccccCHHHHHHHHhccCccccCCchHHHHHhhHHHHHHHHHHHHcCCcCC-CCCEEecHHH
Confidence                        00111111111110    1  578899999999999999999999877655 3555556543

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=99.98  E-value=6.4e-32  Score=221.12  Aligned_cols=132  Identities=27%  Similarity=0.483  Sum_probs=122.5

Q ss_pred             hcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEe
Q 020565           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVE  109 (324)
Q Consensus        30 ~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~  109 (324)
                      |++||+|+|+|++|++++++|+++|+++|+|+|+|.|+++|++||++++.+|+   |++|+++++++|+++||+++++.+
T Consensus         1 r~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~v---G~~Ka~~~~~~l~~~np~~~v~~~   77 (135)
T PF00899_consen    1 RNKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDV---GKNKAEAAKERLQEINPDVEVEAI   77 (135)
T ss_dssp             HT-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGT---TSBHHHHHHHHHHHHSTTSEEEEE
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccc---hhHHHHHHHHHHHHhcCceeeeee
Confidence            57899999999999999999999999999999999999999999999999999   999999999999999999999999


Q ss_pred             eCCCCC-CchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEeeecCceEEEE
Q 020565          110 KGDLSS-LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIF  166 (324)
Q Consensus       110 ~~~~~~-~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~~~~G~~g~v~  166 (324)
                      +..+++ ...++++++|+||+|.|+.+.+.+++++|++  +++|+|++++.|++|++.
T Consensus        78 ~~~~~~~~~~~~~~~~d~vi~~~d~~~~~~~l~~~~~~--~~~p~i~~~~~g~~G~~~  133 (135)
T PF00899_consen   78 PEKIDEENIEELLKDYDIVIDCVDSLAARLLLNEICRE--YGIPFIDAGVNGFYGQVV  133 (135)
T ss_dssp             ESHCSHHHHHHHHHTSSEEEEESSSHHHHHHHHHHHHH--TT-EEEEEEEETTEEEEE
T ss_pred             ecccccccccccccCCCEEEEecCCHHHHHHHHHHHHH--cCCCEEEEEeecCEEEEE
Confidence            998853 5677789999999999999999999999999  999999999999999985

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>KOG2013 consensus SMT3/SUMO-activating complex, catalytic component UBA2 [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=1.1e-31  Score=249.21  Aligned_cols=142  Identities=21%  Similarity=0.429  Sum_probs=134.6

Q ss_pred             HHHHHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCC
Q 020565           24 DAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPM  103 (324)
Q Consensus        24 ~~q~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~  103 (324)
                      +-++.++++|||||||||+|||++|+|+++|+++|+|||-|+|+.+||||||||+.++|   |++||.++++..++.||.
T Consensus         5 ~~~eai~~~riLvVGaGGIGCELLKnLal~gf~~IhiIDlDTIDlSNLNRQFLFrkkhV---gqsKA~vA~~~v~~Fnpn   81 (603)
T KOG2013|consen    5 EKHEAIKSGRILVVGAGGIGCELLKNLALTGFEEIHIIDLDTIDLSNLNRQFLFRKKHV---GQSKATVAAKAVKQFNPN   81 (603)
T ss_pred             HHHHHhccCeEEEEecCcccHHHHHHHHHhcCCeeEEEeccceeccchhhhheeehhhc---CchHHHHHHHHHHHhCCC
Confidence            45678899999999999999999999999999999999999999999999999999999   999999999999999999


Q ss_pred             CeEeEeeCCCCC--CchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEeeecCceEEEEEecC
Q 020565          104 VRVSVEKGDLSS--LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFVDLQ  170 (324)
Q Consensus       104 v~v~~~~~~~~~--~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~~~~G~~g~v~~d~~  170 (324)
                      +++..+...+.+  .+.+|+++||+|+.|.||.+.|..+|+.|..  ..+|+|..|+.|+.||+.+...
T Consensus        82 ~~l~~yhanI~e~~fnv~ff~qfdiV~NaLDNlaAR~yVNr~C~~--a~vPLIesGt~Gf~GQv~~ii~  148 (603)
T KOG2013|consen   82 IKLVPYHANIKEPKFNVEFFRQFDIVLNALDNLAARRYVNRMCLA--ASVPLIESGTGGFLGQVQVIIK  148 (603)
T ss_pred             CceEeccccccCcchHHHHHHHHHHHHHhhccHHHHHHHHHHHHh--hcCCceecCcccccceEEEEec
Confidence            999999888875  5678999999999999999999999999999  9999999999999999987653

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

Probab=99.97  E-value=8e-31  Score=231.94  Aligned_cols=136  Identities=24%  Similarity=0.345  Sum_probs=126.5

Q ss_pred             hhHHHHHHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhh
Q 020565           21 WGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDF  100 (324)
Q Consensus        21 ~g~~~q~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~l  100 (324)
                      +|.++|++|++++|+|+|+||+|++++++|+++||++|+|+|+|.|+++|++||+++..+|+   |++|+++++++|+++
T Consensus         1 ~G~e~~~~L~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~di---G~~Kae~~~~~l~~i   77 (231)
T cd00755           1 YGEEGLEKLRNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTV---GKPKVEVMAERIRDI   77 (231)
T ss_pred             CCHHHHHHHhCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhC---CCcHHHHHHHHHHHH
Confidence            68999999999999999999999999999999999999999999999999999999999999   999999999999999


Q ss_pred             CCCCeEeEeeCCCCC-Cchhhc-CCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEeeecCc
Q 020565          101 NPMVRVSVEKGDLSS-LDGEFY-DKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDS  161 (324)
Q Consensus       101 np~v~v~~~~~~~~~-~~~~~~-~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~~~~G~  161 (324)
                      ||+++++.+...+++ +..+++ .++|+||+|.|+...+..++++|++  +++|+|.+...|-
T Consensus        78 nP~~~V~~~~~~i~~~~~~~l~~~~~D~VvdaiD~~~~k~~L~~~c~~--~~ip~I~s~g~g~  138 (231)
T cd00755          78 NPECEVDAVEEFLTPDNSEDLLGGDPDFVVDAIDSIRAKVALIAYCRK--RKIPVISSMGAGG  138 (231)
T ss_pred             CCCcEEEEeeeecCHhHHHHHhcCCCCEEEEcCCCHHHHHHHHHHHHH--hCCCEEEEeCCcC
Confidence            999999999888774 344455 4799999999999999999999999  9999999876664

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=99.97  E-value=2.4e-30  Score=213.84  Aligned_cols=132  Identities=26%  Similarity=0.393  Sum_probs=124.7

Q ss_pred             cEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEeeCC
Q 020565           33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGD  112 (324)
Q Consensus        33 ~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~~~  112 (324)
                      +|+|+||||+|++++++|+++|+++|+++|+|.++++|++||++++.+|+   |++|+++++++++++||+++++.+...
T Consensus         1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~v---G~~Ka~~~~~~l~~~~p~v~i~~~~~~   77 (143)
T cd01483           1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADI---GKPKAEVAARRLNELNPGVNVTAVPEG   77 (143)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHC---CChHHHHHHHHHHHHCCCcEEEEEeee
Confidence            69999999999999999999999999999999999999999999999999   999999999999999999999999887


Q ss_pred             CCC-CchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEeeecCceEEEEEec
Q 020565          113 LSS-LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFVDL  169 (324)
Q Consensus       113 ~~~-~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~~~~G~~g~v~~d~  169 (324)
                      +.+ ...++++++|+||+|.|+.+.+..++++|++  +++|||.+++.|+.|+++++.
T Consensus        78 ~~~~~~~~~~~~~diVi~~~d~~~~~~~l~~~~~~--~~i~~i~~~~~g~~g~~~~~~  133 (143)
T cd01483          78 ISEDNLDDFLDGVDLVIDAIDNIAVRRALNRACKE--LGIPVIDAGGLGLGGDIQVID  133 (143)
T ss_pred             cChhhHHHHhcCCCEEEECCCCHHHHHHHHHHHHH--cCCCEEEEcCCCcEEEEEEEE
Confidence            765 3367789999999999999999999999999  999999999999999999654

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]

Probab=99.97  E-value=5.1e-31  Score=227.46  Aligned_cols=150  Identities=20%  Similarity=0.307  Sum_probs=138.1

Q ss_pred             CCHHHHHHhHHHHHhhhHHHHHHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccC
Q 020565            6 LTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYG   85 (324)
Q Consensus         6 l~~~e~~ry~Rqi~l~g~~~q~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~   85 (324)
                      .++.-.+||.|.-+|+|.++.++|++++|+|+|+||+||.++..|+|+|||+|+|+|.|.|..+|+|||.-...+++   
T Consensus         5 ~~~~~~~rf~~~~~l~G~~~lekl~~~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~vTN~NRQi~A~~~~i---   81 (263)
T COG1179           5 ISDAYRQRFGGIARLYGEDGLEKLKQAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCVTNTNRQIHALLGDI---   81 (263)
T ss_pred             hHHHHHHHhhhHHHHcChhHHHHHhhCcEEEEecCchhHHHHHHHHHcCCCeEEEEecccccccccchhhHhhhhhc---
Confidence            34555789999999999999999999999999999999999999999999999999999999999999998888999   


Q ss_pred             CccHHHHHHHHHHhhCCCCeEeEeeCCCCC-Cchhhc-CCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEeeecC
Q 020565           86 GKTIAEVCCDSLKDFNPMVRVSVEKGDLSS-LDGEFY-DKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRD  160 (324)
Q Consensus        86 G~~ka~~~~~~l~~lnp~v~v~~~~~~~~~-~~~~~~-~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~~~~G  160 (324)
                      |++|+++++++++.+||+++|......+++ +.++++ .+||+||+|.|+......|-.+|++  +++|+|.....|
T Consensus        82 Gk~Kv~vm~eri~~InP~c~V~~~~~f~t~en~~~~~~~~~DyvIDaiD~v~~Kv~Li~~c~~--~ki~vIss~Gag  156 (263)
T COG1179          82 GKPKVEVMKERIKQINPECEVTAINDFITEENLEDLLSKGFDYVIDAIDSVRAKVALIAYCRR--NKIPVISSMGAG  156 (263)
T ss_pred             ccHHHHHHHHHHHhhCCCceEeehHhhhCHhHHHHHhcCCCCEEEEchhhhHHHHHHHHHHHH--cCCCEEeecccc
Confidence            999999999999999999999999988886 344544 6799999999999999999999999  999999776554

>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p

Probab=99.97  E-value=2.1e-30  Score=253.22  Aligned_cols=144  Identities=16%  Similarity=0.155  Sum_probs=130.3

Q ss_pred             HHHHHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCC
Q 020565           24 DAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPM  103 (324)
Q Consensus        24 ~~q~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~  103 (324)
                      -+.++|++++|+|+||||+||.+|++|+++|||+|++||+|.|+.+|++||++|+.+|+...|++||++++++|+++||.
T Consensus       331 l~~ekL~~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~D~Ve~SNL~RQ~Lf~~~Dv~~~Gk~KA~aAa~~Lk~InP~  410 (664)
T TIGR01381       331 LQLERYSQLKVLLLGAGTLGCNVARCLIGWGVRHITFVDNGKVSYSNPVRQSLSNFEDCLLGGRGKAETAQKALKRIFPS  410 (664)
T ss_pred             hhHHHHhcCeEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEECCCccccccccchhhhhhcCCcHHHHHHHHHHHHCCC
Confidence            45599999999999999999999999999999999999999999999999999999987445899999999999999999


Q ss_pred             CeEeEeeCCC-------CC-----------CchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEeeecCceEEE
Q 020565          104 VRVSVEKGDL-------SS-----------LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEI  165 (324)
Q Consensus       104 v~v~~~~~~~-------~~-----------~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~~~~G~~g~v  165 (324)
                      ++++.+...+       ++           ...++++++|+|++|+|+.++|..++.+|..  +++|+|+++ .|+.|++
T Consensus       411 v~i~~~~~~Ipm~Gh~i~~~~~~~~~~d~~~l~~Li~~~DvV~d~tDn~esR~L~n~~c~~--~~kplI~aA-lGfdg~l  487 (664)
T TIGR01381       411 IQATGHRLTVPMPGHPIDEKDVPELEKDIARLEQLIKDHDVVFLLLDSREARWLPTVLCSR--HKKIAISAA-LGFDSYV  487 (664)
T ss_pred             cEEEEeeeeeccccccCCchhhhhccccHHHHHHHHhhCCEEEECCCCHHHHHHHHHHHHH--hCCCEEEEE-eccceEE
Confidence            9999887653       22           2356789999999999999999999999999  999999985 8999999


Q ss_pred             EEecC
Q 020565          166 FVDLQ  170 (324)
Q Consensus       166 ~~d~~  170 (324)
                      .+-.|
T Consensus       488 vmrhG  492 (664)
T TIGR01381       488 VMRHG  492 (664)
T ss_pred             EEEec
Confidence            87444

This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=99.96  E-value=4.3e-29  Score=216.96  Aligned_cols=140  Identities=16%  Similarity=0.286  Sum_probs=121.1

Q ss_pred             hhhHHHHHHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHh
Q 020565           20 VWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKD   99 (324)
Q Consensus        20 l~g~~~q~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~   99 (324)
                      -.|.++|++|++++|+|+|+||+|++++++|+++||++++|+|.|.|+.+||+||++ ..+++   |++|+++++++|++
T Consensus        10 ~~~~~~q~~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~-~~~~i---G~~Ka~~~~~~l~~   85 (200)
T TIGR02354        10 RHTPKIVQKLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQY-KASQV---GEPKTEALKENISE   85 (200)
T ss_pred             hcCHHHHHHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEcccccccccC-ChhhC---CCHHHHHHHHHHHH
Confidence            368999999999999999999999999999999999999999999999999999974 66889   99999999999999


Q ss_pred             hCCCCeEeEeeCCCCC-CchhhcCCccEEEEcCCCHHHHHHHHHH-HHhccCCccEEEeeecCceEEEE
Q 020565          100 FNPMVRVSVEKGDLSS-LDGEFYDKFDVVVVSCCSVTTKKLINEK-CRKLSKRVAFYTVDCRDSCGEIF  166 (324)
Q Consensus       100 lnp~v~v~~~~~~~~~-~~~~~~~~~diVi~~~~~~~~~~~l~~~-~~~~~~~ip~i~~~~~G~~g~v~  166 (324)
                      +||+++++.+...+++ +..++++++|+||+|.|+++++..+++. |+.  .+.+++.+ ..|+.|+.+
T Consensus        86 inp~~~i~~~~~~i~~~~~~~~~~~~DlVi~a~Dn~~~k~~l~~~~~~~--~~~~~ii~-~~g~~g~~~  151 (200)
T TIGR02354        86 INPYTEIEAYDEKITEENIDKFFKDADIVCEAFDNAEAKAMLVNAVLEK--YKDKYLIA-ASGLAGYDD  151 (200)
T ss_pred             HCCCCEEEEeeeeCCHhHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHH--cCCCcEEE-EeccccCCC
Confidence            9999999998888875 4467789999999999999999876554 555  44444333 367777664

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=99.96  E-value=3.6e-29  Score=213.09  Aligned_cols=129  Identities=18%  Similarity=0.244  Sum_probs=117.9

Q ss_pred             cEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEeeCC
Q 020565           33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGD  112 (324)
Q Consensus        33 ~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~~~  112 (324)
                      +|+|+|+||+|++++++|+++|+++++|+|.|.++.+|++||+++ .+|+   |++|+++++++|+++||+++++.+...
T Consensus         1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~~-~~~v---g~~Ka~~~~~~l~~lnp~v~i~~~~~~   76 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQYF-LSQI---GEPKVEALKENLREINPFVKIEAINIK   76 (174)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhccccc-HhhC---CChHHHHHHHHHHHHCCCCEEEEEEee
Confidence            699999999999999999999999999999999999999999955 6789   999999999999999999999999888


Q ss_pred             CCC-CchhhcCCccEEEEcCCCHHHHHHHHHHHHhccC-CccEEEeeecCceEEEEE
Q 020565          113 LSS-LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSK-RVAFYTVDCRDSCGEIFV  167 (324)
Q Consensus       113 ~~~-~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~-~ip~i~~~~~G~~g~v~~  167 (324)
                      ++. ...++++++|+||+|.|+++.+..+++.|.+  + ++|||.+...|.+|++..
T Consensus        77 ~~~~~~~~~l~~~DlVi~~~d~~~~r~~i~~~~~~--~~~ip~i~~~~~~~~~~~~~  131 (174)
T cd01487          77 IDENNLEGLFGDCDIVVEAFDNAETKAMLAESLLG--NKNKPVVCASGMAGFGDSNN  131 (174)
T ss_pred             cChhhHHHHhcCCCEEEECCCCHHHHHHHHHHHHH--HCCCCEEEEehhhccCCeEE
Confidence            775 4467899999999999999999988777766  5 999999998888888763

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively

Probab=99.95  E-value=9.3e-28  Score=216.72  Aligned_cols=132  Identities=17%  Similarity=0.131  Sum_probs=120.3

Q ss_pred             cEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCC--cccCCccHHHHHHHHHHhhCCCCeEeEee
Q 020565           33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDE--NVYGGKTIAEVCCDSLKDFNPMVRVSVEK  110 (324)
Q Consensus        33 ~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~d--i~~~G~~ka~~~~~~l~~lnp~v~v~~~~  110 (324)
                      ||+|+|+||+||++|++|+++|||+|+|+|+|.|+.+|++||+||..+|  +   |++|+++++++|+++||+++++.+.
T Consensus         1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~D~Ve~sNL~RQ~L~~~~D~~i---Gk~Ka~aaa~~L~~iNP~v~v~~~~   77 (307)
T cd01486           1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDSGKVSYSNPVRQSLFTFEDCKG---GKPKAEAAAERLKEIFPSIDATGIV   77 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEeccccCCcccccccchhhc---CccHHHHHHHHHHHHCCCcEEEEee
Confidence            6999999999999999999999999999999999999999999999999  8   9999999999999999999999886


Q ss_pred             CCC-----------------C-CCchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEeeecCceEEEEEecC
Q 020565          111 GDL-----------------S-SLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFVDLQ  170 (324)
Q Consensus       111 ~~~-----------------~-~~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~~~~G~~g~v~~d~~  170 (324)
                      ..+                 + +...++++++|+||+|+|+.+.|..++.+|..  +++|+|+ ...|+.|++.+=.|
T Consensus        78 ~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~d~tDn~esR~L~~~~~~~--~~k~~I~-aalGfdg~lvmrhg  152 (307)
T cd01486          78 LSIPMPGHPISESEVPSTLKDVKRLEELIKDHDVIFLLTDSRESRWLPTLLSAA--KNKLVIN-AALGFDSYLVMRHG  152 (307)
T ss_pred             eeccccccccccccccccccCHHHHHHHHhhCCEEEECCCCHHHHHHHHHHHHH--hCCcEEE-EEeccceEEEEEeC
Confidence            543                 1 12457789999999999999999999999999  9999998 57899999886433

This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.

>KOG2012 consensus Ubiquitin activating enzyme UBA1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=8.8e-28  Score=235.02  Aligned_cols=192  Identities=24%  Similarity=0.448  Sum_probs=163.3

Q ss_pred             CCCHHH----HHHhHHHHHhhhHHHHHHHhcCcEEEEcCchhHHHHHHHHHHhCCC-----cEEEEcCCccccccCCCCc
Q 020565            5 ELTEQE----TALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVG-----SLTLMDDRVVTEEAWSANF   75 (324)
Q Consensus         5 ~l~~~e----~~ry~Rqi~l~g~~~q~~l~~~~VliiG~g~lGsei~k~L~~~Gv~-----~i~lvD~d~v~~~nl~r~~   75 (324)
                      ++++++    ..|||-||.++|..-|+||.+.++++||+|++|||++||++++|+|     +|++.|.|.|+.+||||||
T Consensus       400 ~~~e~d~~prgsRYD~qiavfG~~fqeKL~~~~~FlVGaGAIGCE~LKN~am~Gvg~g~~g~ItVTDmD~IEkSNLnRQF  479 (1013)
T KOG2012|consen  400 PPSEEDCQPRGSRYDGQIAVFGAKFQEKLADQKVFLVGAGAIGCELLKNFALMGVGCGNSGKITVTDMDHIEKSNLNRQF  479 (1013)
T ss_pred             CCCHHHcccccCccccchhhhchHHHHHHhhCcEEEEccchhhHHHHHhhhheeeccCCCCceEEeccchhhhcccccee
Confidence            455555    3599999999999999999999999999999999999999999994     7999999999999999999


Q ss_pred             ccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEeeCCCCC-----CchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCC
Q 020565           76 LIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSS-----LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKR  150 (324)
Q Consensus        76 l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~~~~~~-----~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~  150 (324)
                      ||+..||   |++|+++++.....+||+++|+.+..++..     ..++||.+.|+|..+.||.+.|..+++-|.-  +.
T Consensus       480 LFR~~dV---gk~KSe~AA~A~~~mNp~l~I~a~~~rvgpeTE~If~D~Ff~~ld~VanALDNVdAR~YvD~RCv~--~~  554 (1013)
T KOG2012|consen  480 LFRPWDV---GKPKSEVAAAAARGMNPDLNIIALQNRVGPETEHIFNDEFFENLDGVANALDNVDARRYVDRRCVY--YR  554 (1013)
T ss_pred             ecccccc---CchHHHHHHHHHHhcCCCceeeehhhccCcccccccchhHHhhhHHHHHhhcchhhhhhhhhhhhh--hc
Confidence            9999999   999999999999999999999998887653     4689999999999999999999999999999  99


Q ss_pred             ccEEEeeecCceEEEEEecCce--ee--eecCcccc-ccccc-CCCChHHhhccCccc
Q 020565          151 VAFYTVDCRDSCGEIFVDLQNH--KY--SKQKIEET-IECQL-RYPSFEEAISVPWRA  202 (324)
Q Consensus       151 ip~i~~~~~G~~g~v~~d~~~~--~~--~~~~~~~~-~~~~~-~f~~~~e~l~~~~~~  202 (324)
                      +|++.+++.|..|...+..+-+  .|  ....++.. .-|++ +||+-.| +..+|.+
T Consensus       555 kPLLESGTlGTKGntQVvvPhlTEsY~SS~DPPEksiP~CTlknFPn~Ie-HTiqWAR  611 (1013)
T KOG2012|consen  555 KPLLESGTLGTKGNTQVVVPHLTESYGSSRDPPEKSIPVCTLKSFPNAIE-HTIQWAR  611 (1013)
T ss_pred             cchhhccCcCCccceeEEeccccccccccCCCcccCCceeeeccCchHHH-HHHHHHH
Confidence            9999999999999887776622  12  11112222 23565 5676655 4556754

>PRK06153 hypothetical protein; Provisional

Probab=99.93  E-value=1.2e-25  Score=209.08  Aligned_cols=128  Identities=14%  Similarity=0.121  Sum_probs=117.1

Q ss_pred             HHHHHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCc-ccCCCCcccCCc--cHHHHHHHHHHhh
Q 020565           24 DAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANF-LIPPDENVYGGK--TIAEVCCDSLKDF  100 (324)
Q Consensus        24 ~~q~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~-l~~~~di~~~G~--~ka~~~~~~l~~l  100 (324)
                      ..|++|++++|+||||||+||.++..|+++||++|+|+|+|.|+++||+||+ +++.+|+   |+  +|++++++++.++
T Consensus       169 ~~q~kL~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D~Ve~SNLnRQ~gaf~~~Dv---Gk~~~KVevaa~rl~~i  245 (393)
T PRK06153        169 ALSAKLEGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGDDFLQHNAFRSPGAASIEEL---REAPKKVDYFKSRYSNM  245 (393)
T ss_pred             HHHHHHhhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCCEecccccccccccCCHhHc---CCcchHHHHHHHHHHHh
Confidence            5699999999999999999999999999999999999999999999999998 5688999   99  9999999999999


Q ss_pred             CCCCeEeEeeCCCCCCchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEeee
Q 020565          101 NPMVRVSVEKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDC  158 (324)
Q Consensus       101 np~v~v~~~~~~~~~~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~~~  158 (324)
                      ||.  +..+...+++.+...++++|+||+|.|+.+.|..++++|.+  ++||||+++.
T Consensus       246 n~~--I~~~~~~I~~~n~~~L~~~DiV~dcvDn~~aR~~ln~~a~~--~gIP~Id~G~  299 (393)
T PRK06153        246 RRG--IVPHPEYIDEDNVDELDGFTFVFVCVDKGSSRKLIVDYLEA--LGIPFIDVGM  299 (393)
T ss_pred             CCe--EEEEeecCCHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHHH--cCCCEEEeee
Confidence            985  56666667654445688999999999999999999999999  9999999875

>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]

Probab=99.91  E-value=3.4e-24  Score=190.23  Aligned_cols=145  Identities=14%  Similarity=0.186  Sum_probs=132.2

Q ss_pred             HHhHHHHHhhhHHHHHHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHH
Q 020565           12 ALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAE   91 (324)
Q Consensus        12 ~ry~Rqi~l~g~~~q~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~   91 (324)
                      +...|++.++|.++|+||+++-|+||||||+||.++-.|+|+|+++|.+||+|.|+.+.||||-....+|+   |.+|+.
T Consensus        55 eqLarN~aFfGee~m~kl~~syVVVVG~GgVGSwv~nmL~RSG~qKi~iVDfdqVSlsSLNrHs~Atl~DV---G~PK~~  131 (430)
T KOG2018|consen   55 EQLARNYAFFGEEGMEKLTNSYVVVVGAGGVGSWVANMLLRSGVQKIRIVDFDQVSLSSLNRHSCATLADV---GTPKVM  131 (430)
T ss_pred             HHHHhHHhhhhhhHHHHhcCcEEEEEecCchhHHHHHHHHHhcCceEEEechhhccHhhhhhhhhhhHhhc---CCchHH
Confidence            44679999999999999999999999999999999999999999999999999999999999999999999   999999


Q ss_pred             HHHHHHHhhCCCCeEeEeeCCCCCC-chhh-cCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEeeecCc
Q 020565           92 VCCDSLKDFNPMVRVSVEKGDLSSL-DGEF-YDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDS  161 (324)
Q Consensus        92 ~~~~~l~~lnp~v~v~~~~~~~~~~-~~~~-~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~~~~G~  161 (324)
                      +++++++++.|++.|++...-++.. .+++ ..+.|+|++|.||.++...+-++|..  +++++|.+...+.
T Consensus       132 clkkh~skiaPw~eIdar~~l~~~~s~edll~gnPdFvvDciDNidtKVdLL~y~~~--~~l~Viss~Gaaa  201 (430)
T KOG2018|consen  132 CLKKHFSKIAPWCEIDARNMLWTSSSEEDLLSGNPDFVVDCIDNIDTKVDLLEYCYN--HGLKVISSTGAAA  201 (430)
T ss_pred             HHHHHHHhhCccceecHHHhhcCCCchhhhhcCCCCeEeEhhhhhhhhhHHHHHHHH--cCCceEeccCccc
Confidence            9999999999999999887777653 3343 35789999999999999999999999  9999997764443

>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein

Probab=99.91  E-value=9.1e-24  Score=187.48  Aligned_cols=132  Identities=14%  Similarity=0.164  Sum_probs=116.3

Q ss_pred             HhcCcEEEEcCchhHHHHHHHHHHhCC-----C-----cEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHH
Q 020565           29 LSKSHILVCGMKGTVAEFCKNIVLAGV-----G-----SLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLK   98 (324)
Q Consensus        29 l~~~~VliiG~g~lGsei~k~L~~~Gv-----~-----~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~   98 (324)
                      -+.++|+|||+||+||+++++|+++|+     |     +++++|+|.|+.+||+|| +|.++|+   |++|+++++++++
T Consensus         9 ~~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~Ve~sNLnRQ-lf~~~dV---G~~Ka~v~~~ri~   84 (244)
T TIGR03736         9 SRPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTVSEANVGRQ-AFYPADV---GQNKAIVLVNRLN   84 (244)
T ss_pred             hCCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEEccchhhcc-cCChhHC---CcHHHHHHHHHHH
Confidence            378899999999999999999999973     4     899999999999999999 5677889   9999999999999


Q ss_pred             hhCCCCeEeEeeCCCCCCchhhcCCccEEEEcCCCHHHHHHHHHHHHhcc-CCccEEEeeecCceEEEEE
Q 020565           99 DFNPMVRVSVEKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLS-KRVAFYTVDCRDSCGEIFV  167 (324)
Q Consensus        99 ~lnp~v~v~~~~~~~~~~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~-~~ip~i~~~~~G~~g~v~~  167 (324)
                      +.+ .++++.+...+..  ..++.++|+||+|.|+.+.|..|++.|++.. .++||+.++..+..|++.+
T Consensus        85 ~~~-~~~i~a~~~~~~~--~~~~~~~DiVi~avDn~~aR~~l~~~~~~~~~~~~~~ld~Gn~~~~gqv~~  151 (244)
T TIGR03736        85 QAM-GTDWTAHPERVER--SSTLHRPDIVIGCVDNRAARLAILRAFEGGYSGYAYWLDLGNRADDGQVIL  151 (244)
T ss_pred             hcc-CceEEEEEeeeCc--hhhhcCCCEEEECCCCHHHHHHHHHHHHHhcccccceecccCCCCCCcEEE
Confidence            988 7899988877765  3446789999999999999999999997621 2479999999999998763

A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.

>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein

Probab=99.87  E-value=9.1e-21  Score=184.10  Aligned_cols=218  Identities=16%  Similarity=0.167  Sum_probs=167.0

Q ss_pred             CCCCHHHHHHhHHHHHhh------hHHHHHHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCccc
Q 020565            4 EELTEQETALYDRQIRVW------GADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLI   77 (324)
Q Consensus         4 ~~l~~~e~~ry~Rqi~l~------g~~~q~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~   77 (324)
                      +.|++...+||..||.++      |...-++.++++|+|+|.|++|+.++.+|+.+|+++|+.+|.|.+ .+|++|    
T Consensus        96 ~~L~~a~lERYaaqI~F~~~fs~s~~~rF~~qR~akVlVlG~Gg~~s~lv~sL~~sG~~~I~~vd~D~v-~SNlnR----  170 (637)
T TIGR03693        96 HELESALLDRYAAQIEFIEADADSGALKFELSRNAKILAAGSGDFLTKLVRSLIDSGFPRFHAIVTDAE-EHALDR----  170 (637)
T ss_pred             CCCCHHHHHHHHHHHHHHHHhccCchhhhhhhhcccEEEEecCchHHHHHHHHHhcCCCcEEEEecccc-chhhhH----
Confidence            459999999999999996      345556779999999999999999999999999999999999999 999999    


Q ss_pred             CCCCcccCCccHHHHHHHHHHhhCCCCeEeEeeCCCCCCchhhcCCccEEEEcCCC--HHHHHHHHHHHHhccCC---cc
Q 020565           78 PPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEFYDKFDVVVVSCCS--VTTKKLINEKCRKLSKR---VA  152 (324)
Q Consensus        78 ~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~~~~~~~~~~~~~~~diVi~~~~~--~~~~~~l~~~~~~~~~~---ip  152 (324)
                          |   |+. ++.+++    +||.++++.++....+...+.++++|+||...|+  .....++|+.|++  .+   +|
T Consensus       171 ----I---gEl-~e~A~~----~n~~v~v~~i~~~~~~dl~ev~~~~DiVi~vsDdy~~~~Lr~lN~acvk--egk~~IP  236 (637)
T TIGR03693       171 ----I---HEL-AEIAEE----TDDALLVQEIDFAEDQHLHEAFEPADWVLYVSDNGDIDDLHALHAFCKE--EGKGFIP  236 (637)
T ss_pred             ----H---HHH-HHHHHH----hCCCCceEeccCCcchhHHHhhcCCcEEEEECCCCChHHHHHHHHHHHH--cCCCeEE
Confidence                6   876 665555    9999999998764444567888999999999994  5567899999999  99   66


Q ss_pred             EEEeeecCceEEEEEecCceeeeecCcccccccccCCCChHHhhccCcccCCCchhHHHHHHHHHH-HHHHHhCCCCCCC
Q 020565          153 FYTVDCRDSCGEIFVDLQNHKYSKQKIEETIECQLRYPSFEEAISVPWRALPRKASKLYFALRVLE-QFEEAEGRSPGEI  231 (324)
Q Consensus       153 ~i~~~~~G~~g~v~~d~~~~~~~~~~~~~~~~~~~~f~~~~e~l~~~~~~~~~~~~~~~~~~~~l~-~f~~~~~~~p~~~  231 (324)
                      ++.++..++.|-+|.  +                                  .+.    -||.|++ ...+..  ++.. 
T Consensus       237 ai~~G~~~liGPlft--P----------------------------------gkT----GCWeCa~~RL~e~~--L~~~-  273 (637)
T TIGR03693       237 AICLKQVGLAGPVFQ--Q----------------------------------HGD----ECFEAAWHRLHESA--LHEE-  273 (637)
T ss_pred             EEEcccceeecceEC--C----------------------------------CCC----cHHHHHHHHHHHHh--cCCC-
Confidence            677777777777762  0                                  011    1233433 111111  1100 


Q ss_pred             CcccHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhcCCcccch-hHHHHHHHHHHHHHHHhcCCCcc--cceEEEeccC
Q 020565          232 SIADLPAVLKLKKELCEANALNASHVTDSLLERLIIGTREFTPV-CAVVGGILGQEVIKAISCKGEPL--KNFFFFDIMD  308 (324)
Q Consensus       232 ~~~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~p~-~av~Ggi~aqEviK~itg~~~pl--~~~~~~D~~~  308 (324)
                                         .                ....++|. +|+++++++.|++|.+||...+-  .+++.+|..+
T Consensus       274 -------------------~----------------~s~a~sPat~AmlAnviv~ElfK~ITg~~~~es~gqlv~lDleT  318 (637)
T TIGR03693       274 -------------------N----------------SLAAFPLAGKAMLANIIVFELFKAAADDEHLEKKNQFFLLDLAT  318 (637)
T ss_pred             -------------------C----------------cccccCHHHHHHHHHHHHHHHHHHHhccCccccCCcEEEEEccc
Confidence                               0                11226565 89999999999999999865443  3599999999


Q ss_pred             CceeEEecCC
Q 020565          309 GKGVVEDVSS  318 (324)
Q Consensus       309 ~~~~~~~~~~  318 (324)
                      .++..+.+.+
T Consensus       319 LE~~WH~vvk  328 (637)
T TIGR03693       319 LEGGWHAFIK  328 (637)
T ss_pred             cccccccCCC
Confidence            9998887754

Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.

>KOG2336 consensus Molybdopterin biosynthesis-related protein [Coenzyme transport and metabolism]

Probab=99.87  E-value=1.8e-21  Score=170.64  Aligned_cols=233  Identities=18%  Similarity=0.290  Sum_probs=175.4

Q ss_pred             HHhHHHHHh--hhH-HHHHHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCcc
Q 020565           12 ALYDRQIRV--WGA-DAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKT   88 (324)
Q Consensus        12 ~ry~Rqi~l--~g~-~~q~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~   88 (324)
                      +-|+|-+.|  .|. ...++++...|.|+|.||+||-+|..|.|.|||++.|+|.|.|+..|++|-| |.++..   |.+
T Consensus        60 NPYSRLMALqRMgIV~dYErIR~~aVAiVGvGGVGSV~AeMLTRCGIGkLlLfDYDkVElANMNRLF-f~P~Qa---Gls  135 (422)
T KOG2336|consen   60 NPYSRLMALQRMGIVDDYERIREFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRLF-FQPDQA---GLS  135 (422)
T ss_pred             ChHHHHHHHHHhcchhhHHHHhhheeEEEecCchhHHHHHHHHhcCcceEEEeecchhhhhcccccc-cCcccc---cch
Confidence            459998888  554 5578999999999999999999999999999999999999999999999965 566667   999


Q ss_pred             HHHHHHHHHHhhCCCCeEeEeeCCCCC--Cchhhc-----------CCccEEEEcCCCHHHHHHHHHHHHhccCCccEEE
Q 020565           89 IAEVCCDSLKDFNPMVRVSVEKGDLSS--LDGEFY-----------DKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYT  155 (324)
Q Consensus        89 ka~~~~~~l~~lnp~v~v~~~~~~~~~--~~~~~~-----------~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~  155 (324)
                      |++++...|..+||+|.+++++..++.  +-+.|.           +..|+|+.|.||++.|..+|..|-+  .+-.|..
T Consensus       136 Kv~AA~~TL~~iNPDV~iE~hn~NITTvenFd~F~~~is~g~~~~gkpvDLVLSCVDNfEARMavN~ACNE--~~q~WmE  213 (422)
T KOG2336|consen  136 KVDAAVQTLAEINPDVVIEVHNYNITTVENFDTFTDRISNGSLCPGKPVDLVLSCVDNFEARMAVNQACNE--LNQTWME  213 (422)
T ss_pred             HHHHHHHHHHhcCCCeEEEEeecceeeehhHHHHHHHhhcCCCCCCCcceEEeeehhhHHHHHHHHHHHHH--hhhHHHH
Confidence            999999999999999999999887763  212221           4589999999999999999999998  7777776


Q ss_pred             eeec--CceEEEEEecCceeeeecCcccccccccCCCChHHhhccCcccCCCchhHHHHHHHHHHHHHHHhCCCCCCCCc
Q 020565          156 VDCR--DSCGEIFVDLQNHKYSKQKIEETIECQLRYPSFEEAISVPWRALPRKASKLYFALRVLEQFEEAEGRSPGEISI  233 (324)
Q Consensus       156 ~~~~--G~~g~v~~d~~~~~~~~~~~~~~~~~~~~f~~~~e~l~~~~~~~~~~~~~~~~~~~~l~~f~~~~~~~p~~~~~  233 (324)
                      .++.  ...|.+....+.          ...|-.--|++-                                        
T Consensus       214 SGVSEnAVSGHIQ~i~PG----------etACFACaPPlV----------------------------------------  243 (422)
T KOG2336|consen  214 SGVSENAVSGHIQLIVPG----------ETACFACAPPLV----------------------------------------  243 (422)
T ss_pred             ccCccccccceeEEecCC----------ccceecccCcee----------------------------------------
Confidence            6553  455666532221          011100011110                                        


Q ss_pred             ccHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhcCCcccchhHHHHHHHHHHHHHHHhcCCCcccceEEEeccCCceeE
Q 020565          234 ADLPAVLKLKKELCEANALNASHVTDSLLERLIIGTREFTPVCAVVGGILGQEVIKAISCKGEPLKNFFFFDIMDGKGVV  313 (324)
Q Consensus       234 ~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~p~~av~Ggi~aqEviK~itg~~~pl~~~~~~D~~~~~~~~  313 (324)
                                         -.+.+|+..+++=--+.+.++.+-++++|++.|-.+|+|..-++- ..|+-|+++..-.+.
T Consensus       244 -------------------VAs~IDErTLKReGVCAASLPTTMgvvAG~LVqN~LK~LLNFGeV-S~YlGYNal~DFFP~  303 (422)
T KOG2336|consen  244 -------------------VASGIDERTLKREGVCAASLPTTMGVVAGFLVQNSLKFLLNFGEV-SPYLGYNALSDFFPT  303 (422)
T ss_pred             -------------------eecCcchhhhhhcceeeecCcchHHHHHHHHHHHHHHHHhhcccc-chhhcchhHHhhCcc
Confidence                               011122222211111667799999999999999999999876654 578899998888888


Q ss_pred             EecCCCC
Q 020565          314 EDVSSPK  320 (324)
Q Consensus       314 ~~~~~~~  320 (324)
                      .++.|++
T Consensus       304 msmkPNP  310 (422)
T KOG2336|consen  304 MSMKPNP  310 (422)
T ss_pred             ccCCCCC
Confidence            8887743

>KOG2337 consensus Ubiquitin activating E1 enzyme-like protein [Coenzyme transport and metabolism]

Probab=99.69  E-value=4.5e-17  Score=153.36  Aligned_cols=144  Identities=15%  Similarity=0.113  Sum_probs=122.1

Q ss_pred             HHHHHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCC
Q 020565           24 DAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPM  103 (324)
Q Consensus        24 ~~q~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~  103 (324)
                      --.+++++.++|+.|+|.+||.||++|...||++||++|+.+|..+|--||.||+.+|....|++||++++++|++++|.
T Consensus       333 LnLd~is~~KcLLLGAGTLGC~VAR~Ll~WGvRhITFvDn~kVsySNPVRQsLy~FEDc~~~g~~KAe~Aa~rLk~IfP~  412 (669)
T KOG2337|consen  333 LNLDIISQTKCLLLGAGTLGCNVARNLLGWGVRHITFVDNGKVSYSNPVRQSLYTFEDCLGGGRPKAETAAQRLKEIFPS  412 (669)
T ss_pred             cchhhhhcceeEEecCcccchHHHHHHHhhccceEEEEecCeeeccchhhhhhhhhhhhhccCCcchHHHHHHHHHhCcc
Confidence            34589999999999999999999999999999999999999999999999999999997445799999999999999999


Q ss_pred             CeEeEeeCCC-------CC-----------CchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEeeecCceEEE
Q 020565          104 VRVSVEKGDL-------SS-----------LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEI  165 (324)
Q Consensus       104 v~v~~~~~~~-------~~-----------~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~~~~G~~g~v  165 (324)
                      ++...+...+       .+           ..++++++.|+|+..+|+.+.|..-.-+|..  +++-+|++. .|+..|+
T Consensus       413 m~atG~~lsIPMpGH~I~e~~~e~~~~D~~~Le~LI~~HDviFLLtDsRESRWLPtll~a~--~~KivINaA-LGFDsyl  489 (669)
T KOG2337|consen  413 MEATGYVLSIPMPGHPIGESLLEQTKKDLKRLEQLIKDHDVIFLLTDSRESRWLPTLLAAA--KNKIVINAA-LGFDSYL  489 (669)
T ss_pred             ccccceEEeccCCCCccchhhHHHHHHHHHHHHHHHhhcceEEEEeccchhhhhHHHHHhh--hcceEeeee-cccceeE
Confidence            8776654432       11           1255678999999999999999877777766  777778776 8998888


Q ss_pred             EEecC
Q 020565          166 FVDLQ  170 (324)
Q Consensus       166 ~~d~~  170 (324)
                      ..=.|
T Consensus       490 VMRHG  494 (669)
T KOG2337|consen  490 VMRHG  494 (669)
T ss_pred             EEecC
Confidence            76444

>COG4015 Predicted dinucleotide-utilizing enzyme of the ThiF/HesA family [General function prediction only]

Probab=98.68  E-value=1.6e-07  Score=76.84  Aligned_cols=124  Identities=12%  Similarity=0.136  Sum_probs=96.8

Q ss_pred             hcCcEEEEcCchhHHHHHHHHH---HhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeE
Q 020565           30 SKSHILVCGMKGTVAEFCKNIV---LAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRV  106 (324)
Q Consensus        30 ~~~~VliiG~g~lGsei~k~L~---~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v  106 (324)
                      -...|.+||||-+|--++-+|.   +-|..+|.++|...|++.|+-.-  ..-..+   |.+|++-+ ++|.+-.+.-++
T Consensus        17 PrGeV~l~G~GRLG~Rval~Lle~HRGGperi~v~Dgqrve~dDiihr--r~Ga~~---GEyKv~Fi-~rl~~~~f~r~V   90 (217)
T COG4015          17 PRGEVSLIGCGRLGVRVALDLLEVHRGGPERIYVFDGQRVEEDDIIHR--RLGAKV---GEYKVDFI-KRLGRVHFGRRV   90 (217)
T ss_pred             CCceEEEEeccchhHHHHHHHHHHhcCCCeEEEEecCcccCchhhHHH--HhCCCc---chhHHHHH-HHhCcCCCCcee
Confidence            3456999999999999999998   67899999999999999998432  223456   99999865 456666777788


Q ss_pred             eEeeCCCCCCchhhcCCccEEEEcC---CCHHHHHHHHHHHHhccCCccEEEeeecCceEE
Q 020565          107 SVEKGDLSSLDGEFYDKFDVVVVSC---CSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGE  164 (324)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~diVi~~~---~~~~~~~~l~~~~~~~~~~ip~i~~~~~G~~g~  164 (324)
                      +.+.+.++..+...+++ |+|+.|.   |..++-..|.++|++  .++.-|  ++.|.+|+
T Consensus        91 ~a~pE~it~dNlhll~g-DVvvi~IAGGdT~PvTaaii~ya~~--rG~~Ti--sT~GVFGi  146 (217)
T COG4015          91 EAFPENITKDNLHLLKG-DVVVICIAGGDTIPVTAAIINYAKE--RGIKTI--STNGVFGI  146 (217)
T ss_pred             ecccccccccchhhhcC-CEEEEEecCCCcchhHHHHHHHHHH--cCceEe--ecCceeec
Confidence            89888888766666665 8877664   567778889999999  888655  55676664

>PF05237 MoeZ_MoeB: MoeZ/MoeB domain; InterPro: IPR007901 This putative domain is found in the MoeZ protein and the MoeB protein

Probab=98.41  E-value=4.3e-07  Score=67.80  Aligned_cols=47  Identities=23%  Similarity=0.431  Sum_probs=37.7

Q ss_pred             ccchhHHHHHHHHHHHHHHHhcCCCcccc-eEEEeccCCceeEEecCC
Q 020565          272 FTPVCAVVGGILGQEVIKAISCKGEPLKN-FFFFDIMDGKGVVEDVSS  318 (324)
Q Consensus       272 l~p~~av~Ggi~aqEviK~itg~~~pl~~-~~~~D~~~~~~~~~~~~~  318 (324)
                      ++|+++++|+++|+|+||+|+|.+.++.+ +++||+.+++...+.+.+
T Consensus        26 lg~~~giigslqA~eaik~l~g~~~~l~~~l~~~D~~~~~~~~i~~~k   73 (84)
T PF05237_consen   26 LGPVVGIIGSLQANEAIKLLLGIGEPLSGKLLTIDLLNMSFRSIRIKK   73 (84)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHCT-S---BTEEEEEETTTTEEEEEE---
T ss_pred             ccchHHHHHHHHHHHHHHHHHhcCCchhhheeeEECCCCeEEEEecCC
Confidence            99999999999999999999999999876 999999999999988874

The domain has two CXXC motifs that are only partly conserved. MoeZ is necessary for the synthesis of pyridine-2,6-bis(thiocarboxylic acid), a small secreted metabolite that has a high affinity for transition metals, increases iron uptake efficiency by 20% in Pseudomonas stutzeri, has the ability to reduce both soluble and mineral forms of iron, and has antimicrobial activity towards several species of bacteria. MoeB is the molybdopterin synthase activating enzyme in the molybdopterin cofactor biosynthesis pathway. Both these enzymes are members of a superfamily consisting of related but structurally distinct proteins that are members of pathways involved in the transfer of sulphur-containing moieties to metabolites [] and both also contain the UBA/THIF-type NAD/FAD binding fold (IPR000594 from INTERPRO). ; PDB: 1JWA_B 1JW9_B 1JWB_B 1ZKM_D 1ZUD_3 1ZFN_D.

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=98.08  E-value=1.2e-05  Score=65.62  Aligned_cols=79  Identities=18%  Similarity=0.201  Sum_probs=58.7

Q ss_pred             HHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEe
Q 020565           28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS  107 (324)
Q Consensus        28 ~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~  107 (324)
                      .+++++|+|+|+||.|..+++.|...|+++++++..                      ...|++.+++.+    +...+.
T Consensus         9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nR----------------------t~~ra~~l~~~~----~~~~~~   62 (135)
T PF01488_consen    9 DLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNR----------------------TPERAEALAEEF----GGVNIE   62 (135)
T ss_dssp             TGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEES----------------------SHHHHHHHHHHH----TGCSEE
T ss_pred             CcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEEC----------------------CHHHHHHHHHHc----Cccccc
Confidence            589999999999999999999999999999999754                      344777777776    333444


Q ss_pred             EeeCCCCCCchhhcCCccEEEEcCCCHH
Q 020565          108 VEKGDLSSLDGEFYDKFDVVVVSCCSVT  135 (324)
Q Consensus       108 ~~~~~~~~~~~~~~~~~diVi~~~~~~~  135 (324)
                      ....  ++ ..+.+.++|+||.|+....
T Consensus        63 ~~~~--~~-~~~~~~~~DivI~aT~~~~   87 (135)
T PF01488_consen   63 AIPL--ED-LEEALQEADIVINATPSGM   87 (135)
T ss_dssp             EEEG--GG-HCHHHHTESEEEE-SSTTS
T ss_pred             eeeH--HH-HHHHHhhCCeEEEecCCCC
Confidence            4322  11 2355779999999987543

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=98.04  E-value=5.3e-05  Score=66.07  Aligned_cols=95  Identities=8%  Similarity=0.156  Sum_probs=66.0

Q ss_pred             HHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEe
Q 020565           28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS  107 (324)
Q Consensus        28 ~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~  107 (324)
                      .|++.+|+|||.|.+|...++.|...| .++++++++.-.                            .+.++.+.-.+.
T Consensus         7 ~l~~k~vLVIGgG~va~~ka~~Ll~~g-a~V~VIs~~~~~----------------------------~l~~l~~~~~i~   57 (202)
T PRK06718          7 DLSNKRVVIVGGGKVAGRRAITLLKYG-AHIVVISPELTE----------------------------NLVKLVEEGKIR   57 (202)
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHHCC-CeEEEEcCCCCH----------------------------HHHHHHhCCCEE
Confidence            378899999999999999999999999 579999752100                            011111111233


Q ss_pred             EeeCCCCCCchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEee
Q 020565          108 VEKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVD  157 (324)
Q Consensus       108 ~~~~~~~~~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~~  157 (324)
                      .....   .....+.++|+||.|+++.+....+.+.|++   ++++-.+.
T Consensus        58 ~~~~~---~~~~~l~~adlViaaT~d~elN~~i~~~a~~---~~lvn~~d  101 (202)
T PRK06718         58 WKQKE---FEPSDIVDAFLVIAATNDPRVNEQVKEDLPE---NALFNVIT  101 (202)
T ss_pred             EEecC---CChhhcCCceEEEEcCCCHHHHHHHHHHHHh---CCcEEECC
Confidence            33322   2245578999999999999999999999944   56544433

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=98.04  E-value=2e-05  Score=72.41  Aligned_cols=77  Identities=21%  Similarity=0.182  Sum_probs=60.5

Q ss_pred             HhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeE
Q 020565           29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV  108 (324)
Q Consensus        29 l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~  108 (324)
                      ++.++|+|+|+||.|..++..|+..|+++++|+|.                      ...|++.+++.+.+.++.+.+..
T Consensus       125 ~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR----------------------~~~ka~~la~~l~~~~~~~~~~~  182 (284)
T PRK12549        125 ASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDV----------------------DPARAAALADELNARFPAARATA  182 (284)
T ss_pred             ccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECC----------------------CHHHHHHHHHHHHhhCCCeEEEe
Confidence            56678999999999999999999999999999976                      34588889998888777654433


Q ss_pred             eeCCCCCCchhhcCCccEEEEcCC
Q 020565          109 EKGDLSSLDGEFYDKFDVVVVSCC  132 (324)
Q Consensus       109 ~~~~~~~~~~~~~~~~diVi~~~~  132 (324)
                      ..     ...+.+.++|+||.|+-
T Consensus       183 ~~-----~~~~~~~~aDiVInaTp  201 (284)
T PRK12549        183 GS-----DLAAALAAADGLVHATP  201 (284)
T ss_pred             cc-----chHhhhCCCCEEEECCc
Confidence            21     11334678999999973

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=98.03  E-value=2.6e-05  Score=74.01  Aligned_cols=101  Identities=19%  Similarity=0.239  Sum_probs=70.8

Q ss_pred             CcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEeeC
Q 020565           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKG  111 (324)
Q Consensus        32 ~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~~  111 (324)
                      .+|+|+|+|++|+.+|.+|+..|.++|++.|..                      ..|+..    +...... ++++..-
T Consensus         2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs----------------------~~~~~~----i~~~~~~-~v~~~~v   54 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRS----------------------KEKCAR----IAELIGG-KVEALQV   54 (389)
T ss_pred             CcEEEECCchhHHHHHHHHHhCCCceEEEEeCC----------------------HHHHHH----HHhhccc-cceeEEe
Confidence            579999999999999999999999999998872                      112222    2111111 4444444


Q ss_pred             CCCC--CchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEeeecCce
Q 020565          112 DLSS--LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSC  162 (324)
Q Consensus       112 ~~~~--~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~~~~G~~  162 (324)
                      +..+  -..+.++++|+||.|...+-.. .+-+.|-+  .+++++++....-.
T Consensus        55 D~~d~~al~~li~~~d~VIn~~p~~~~~-~i~ka~i~--~gv~yvDts~~~~~  104 (389)
T COG1748          55 DAADVDALVALIKDFDLVINAAPPFVDL-TILKACIK--TGVDYVDTSYYEEP  104 (389)
T ss_pred             cccChHHHHHHHhcCCEEEEeCCchhhH-HHHHHHHH--hCCCEEEcccCCch
Confidence            4433  3467788999999998776555 67788888  88888877765443

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=97.89  E-value=0.00014  Score=63.49  Aligned_cols=103  Identities=16%  Similarity=0.203  Sum_probs=74.7

Q ss_pred             HhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeE
Q 020565           29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV  108 (324)
Q Consensus        29 l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~  108 (324)
                      |++.+|+|||.|.+|..-++.|...|. ++++++++.-             +.               ++++-..-+++.
T Consensus         7 l~gk~vlVvGgG~va~rk~~~Ll~~ga-~VtVvsp~~~-------------~~---------------l~~l~~~~~i~~   57 (205)
T TIGR01470         7 LEGRAVLVVGGGDVALRKARLLLKAGA-QLRVIAEELE-------------SE---------------LTLLAEQGGITW   57 (205)
T ss_pred             cCCCeEEEECcCHHHHHHHHHHHHCCC-EEEEEcCCCC-------------HH---------------HHHHHHcCCEEE
Confidence            678899999999999999999999996 5999987321             00               111111114455


Q ss_pred             eeCCCCCCchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEeeecCceEEE
Q 020565          109 EKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEI  165 (324)
Q Consensus       109 ~~~~~~~~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~~~~G~~g~v  165 (324)
                      ....+.   ...+.++++||.++++.+....+...|++  .++|+-.++.-....++
T Consensus        58 ~~~~~~---~~dl~~~~lVi~at~d~~ln~~i~~~a~~--~~ilvn~~d~~e~~~f~  109 (205)
T TIGR01470        58 LARCFD---ADILEGAFLVIAATDDEELNRRVAHAARA--RGVPVNVVDDPELCSFI  109 (205)
T ss_pred             EeCCCC---HHHhCCcEEEEECCCCHHHHHHHHHHHHH--cCCEEEECCCcccCeEE
Confidence            444433   45678999999999999899999999999  89988666554443433

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=97.81  E-value=5.5e-05  Score=58.61  Aligned_cols=89  Identities=18%  Similarity=0.258  Sum_probs=63.8

Q ss_pred             HHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEe
Q 020565           28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS  107 (324)
Q Consensus        28 ~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~  107 (324)
                      .|++.+|+|||.|.+|..-++.|..+| .+++++.++. +...                               ..++  
T Consensus         4 ~l~~~~vlVvGgG~va~~k~~~Ll~~g-A~v~vis~~~-~~~~-------------------------------~~i~--   48 (103)
T PF13241_consen    4 DLKGKRVLVVGGGPVAARKARLLLEAG-AKVTVISPEI-EFSE-------------------------------GLIQ--   48 (103)
T ss_dssp             --TT-EEEEEEESHHHHHHHHHHCCCT-BEEEEEESSE-HHHH-------------------------------TSCE--
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHhCC-CEEEEECCch-hhhh-------------------------------hHHH--
Confidence            478999999999999999999999999 5799998864 1000                               1122  


Q ss_pred             EeeCCCCCCchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEee
Q 020565          108 VEKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVD  157 (324)
Q Consensus       108 ~~~~~~~~~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~~  157 (324)
                      .....+    .+.++++++|+.++++......+.+.|++  .++|+-.+.
T Consensus        49 ~~~~~~----~~~l~~~~lV~~at~d~~~n~~i~~~a~~--~~i~vn~~D   92 (103)
T PF13241_consen   49 LIRREF----EEDLDGADLVFAATDDPELNEAIYADARA--RGILVNVVD   92 (103)
T ss_dssp             EEESS-----GGGCTTESEEEE-SS-HHHHHHHHHHHHH--TTSEEEETT
T ss_pred             HHhhhH----HHHHhhheEEEecCCCHHHHHHHHHHHhh--CCEEEEECC
Confidence            222222    24578899999999999999999999999  888765444

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=97.72  E-value=0.00043  Score=57.90  Aligned_cols=84  Identities=8%  Similarity=0.201  Sum_probs=62.0

Q ss_pred             HHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEe
Q 020565           28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS  107 (324)
Q Consensus        28 ~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~  107 (324)
                      .|++.+|+|||.|.+|...++.|...|.. +++++++..+.                            +.++ +  .+.
T Consensus        10 ~l~~~~vlVvGGG~va~rka~~Ll~~ga~-V~VIsp~~~~~----------------------------l~~l-~--~i~   57 (157)
T PRK06719         10 NLHNKVVVIIGGGKIAYRKASGLKDTGAF-VTVVSPEICKE----------------------------MKEL-P--YIT   57 (157)
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHhCCCE-EEEEcCccCHH----------------------------HHhc-c--CcE
Confidence            47889999999999999999999999975 99987642211                            1111 1  122


Q ss_pred             EeeCCCCCCchhhcCCccEEEEcCCCHHHHHHHHHHHHh
Q 020565          108 VEKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRK  146 (324)
Q Consensus       108 ~~~~~~~~~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~  146 (324)
                      .....   +.+..++++|+||.++++.+....+...|++
T Consensus        58 ~~~~~---~~~~dl~~a~lViaaT~d~e~N~~i~~~a~~   93 (157)
T PRK06719         58 WKQKT---FSNDDIKDAHLIYAATNQHAVNMMVKQAAHD   93 (157)
T ss_pred             EEecc---cChhcCCCceEEEECCCCHHHHHHHHHHHHH
Confidence            22222   2345578999999999999999999999977

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=97.58  E-value=0.001  Score=58.72  Aligned_cols=100  Identities=15%  Similarity=0.219  Sum_probs=72.4

Q ss_pred             HHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEe
Q 020565           28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS  107 (324)
Q Consensus        28 ~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~  107 (324)
                      .+++.+|+|||.|.++..=++.|..+|.. +|++-++.-..                            ++++-..-.++
T Consensus        22 ~~~~~~VLVVGGG~VA~RK~~~Ll~~gA~-VtVVap~i~~e----------------------------l~~l~~~~~i~   72 (223)
T PRK05562         22 LSNKIKVLIIGGGKAAFIKGKTFLKKGCY-VYILSKKFSKE----------------------------FLDLKKYGNLK   72 (223)
T ss_pred             ECCCCEEEEECCCHHHHHHHHHHHhCCCE-EEEEcCCCCHH----------------------------HHHHHhCCCEE
Confidence            35688999999999999999999999954 99987642111                            11111111344


Q ss_pred             EeeCCCCCCchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEeeecCc
Q 020565          108 VEKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDS  161 (324)
Q Consensus       108 ~~~~~~~~~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~~~~G~  161 (324)
                      .....+   ..+.+.++++||.|+++.+....+.+.|+.  .++++..+..-..
T Consensus        73 ~~~r~~---~~~dl~g~~LViaATdD~~vN~~I~~~a~~--~~~lvn~vd~p~~  121 (223)
T PRK05562         73 LIKGNY---DKEFIKDKHLIVIATDDEKLNNKIRKHCDR--LYKLYIDCSDYKK  121 (223)
T ss_pred             EEeCCC---ChHHhCCCcEEEECCCCHHHHHHHHHHHHH--cCCeEEEcCCccc
Confidence            444433   355678999999999999999999999999  8887776654443

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=97.53  E-value=0.00033  Score=64.51  Aligned_cols=83  Identities=20%  Similarity=0.196  Sum_probs=57.5

Q ss_pred             HhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeE
Q 020565           29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV  108 (324)
Q Consensus        29 l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~  108 (324)
                      ++.++++|+|+||+|..++..|+..|+.++++++.+.              +     ...|++.+++.+.+..+.+.+..
T Consensus       124 ~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~--------------~-----~~~~a~~l~~~l~~~~~~~~~~~  184 (289)
T PRK12548        124 VKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD--------------D-----FYERAEQTAEKIKQEVPECIVNV  184 (289)
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc--------------h-----HHHHHHHHHHHHhhcCCCceeEE
Confidence            4567899999999999999999999999999986510              0     12467777777766555544433


Q ss_pred             eeCCCCC--CchhhcCCccEEEEcCC
Q 020565          109 EKGDLSS--LDGEFYDKFDVVVVSCC  132 (324)
Q Consensus       109 ~~~~~~~--~~~~~~~~~diVi~~~~  132 (324)
                      .  ++.+  .....++.+|+||+|+-
T Consensus       185 ~--d~~~~~~~~~~~~~~DilINaTp  208 (289)
T PRK12548        185 Y--DLNDTEKLKAEIASSDILVNATL  208 (289)
T ss_pred             e--chhhhhHHHhhhccCCEEEEeCC
Confidence            2  2221  12334567899998873

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=97.38  E-value=0.00043  Score=66.31  Aligned_cols=95  Identities=20%  Similarity=0.203  Sum_probs=65.2

Q ss_pred             EEEEcCchhHHHHHHHHHHhCCC-cEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEeeCC
Q 020565           34 ILVCGMKGTVAEFCKNIVLAGVG-SLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGD  112 (324)
Q Consensus        34 VliiG~g~lGsei~k~L~~~Gv~-~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~~~  112 (324)
                      |+|+|+|.+|+.+++.|++.+-. ++++.|.                      ...|++.+++.+    ...+++...-+
T Consensus         1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r----------------------~~~~~~~~~~~~----~~~~~~~~~~d   54 (386)
T PF03435_consen    1 ILVLGAGRVGSAIARLLARRGPFEEVTVADR----------------------NPEKAERLAEKL----LGDRVEAVQVD   54 (386)
T ss_dssp             EEEE--SHHHHHHHHHHHCTTCE-EEEEEES----------------------SHHHHHHHHT------TTTTEEEEE--
T ss_pred             CEEEcCcHHHHHHHHHHhcCCCCCcEEEEEC----------------------CHHHHHHHHhhc----cccceeEEEEe
Confidence            78999999999999999999855 8999877                      444555444444    22355555555


Q ss_pred             CCC--CchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEee
Q 020565          113 LSS--LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVD  157 (324)
Q Consensus       113 ~~~--~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~~  157 (324)
                      ..+  ...++++++|+||+|..+. ....+-+.|.+  .++++++..
T Consensus        55 ~~~~~~l~~~~~~~dvVin~~gp~-~~~~v~~~~i~--~g~~yvD~~   98 (386)
T PF03435_consen   55 VNDPESLAELLRGCDVVINCAGPF-FGEPVARACIE--AGVHYVDTS   98 (386)
T ss_dssp             TTTHHHHHHHHTTSSEEEE-SSGG-GHHHHHHHHHH--HT-EEEESS
T ss_pred             cCCHHHHHHHHhcCCEEEECCccc-hhHHHHHHHHH--hCCCeeccc
Confidence            544  2467889999999999877 66678889988  888888843

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=97.36  E-value=0.00058  Score=62.65  Aligned_cols=79  Identities=18%  Similarity=0.112  Sum_probs=55.3

Q ss_pred             HhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeE
Q 020565           29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV  108 (324)
Q Consensus        29 l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~  108 (324)
                      ++.++|+|+|+||.+..++..|+..|+.+|+|++.                      ...|++.+++.+.+..+...+..
T Consensus       125 ~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR----------------------~~~ka~~La~~~~~~~~~~~~~~  182 (283)
T PRK14027        125 AKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADL----------------------DTSRAQALADVINNAVGREAVVG  182 (283)
T ss_pred             cCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcC----------------------CHHHHHHHHHHHhhccCcceEEe
Confidence            45678999999999999999999999999999865                      33477777777665444322222


Q ss_pred             eeCCCCCCchhhcCCccEEEEcCC
Q 020565          109 EKGDLSSLDGEFYDKFDVVVVSCC  132 (324)
Q Consensus       109 ~~~~~~~~~~~~~~~~diVi~~~~  132 (324)
                      .  .... ....+..+|+||+|+-
T Consensus       183 ~--~~~~-~~~~~~~~divINaTp  203 (283)
T PRK14027        183 V--DARG-IEDVIAAADGVVNATP  203 (283)
T ss_pred             c--CHhH-HHHHHhhcCEEEEcCC
Confidence            1  1111 1223467899999874

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=97.32  E-value=0.00061  Score=62.54  Aligned_cols=77  Identities=17%  Similarity=0.073  Sum_probs=53.5

Q ss_pred             HhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeE
Q 020565           29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV  108 (324)
Q Consensus        29 l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~  108 (324)
                      ++.++|+|+|+||.|..++..|+..|+.+++|++.                      -..|++.+++.+.....   +..
T Consensus       123 ~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nR----------------------t~~ka~~La~~~~~~~~---~~~  177 (282)
T TIGR01809       123 LAGFRGLVIGAGGTSRAAVYALASLGVTDITVINR----------------------NPDKLSRLVDLGVQVGV---ITR  177 (282)
T ss_pred             cCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeC----------------------CHHHHHHHHHHhhhcCc---cee
Confidence            46789999999999999999999999999999864                      23367777766643311   111


Q ss_pred             eeCCCCCCchhhcCCccEEEEcCC
Q 020565          109 EKGDLSSLDGEFYDKFDVVVVSCC  132 (324)
Q Consensus       109 ~~~~~~~~~~~~~~~~diVi~~~~  132 (324)
                      ..  ..+.....+.++|+||.|+-
T Consensus       178 ~~--~~~~~~~~~~~~DiVInaTp  199 (282)
T TIGR01809       178 LE--GDSGGLAIEKAAEVLVSTVP  199 (282)
T ss_pred             cc--chhhhhhcccCCCEEEECCC
Confidence            11  00111234568999999975

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>PRK04148 hypothetical protein; Provisional

Probab=97.29  E-value=0.0037  Score=50.60  Aligned_cols=97  Identities=14%  Similarity=0.146  Sum_probs=72.6

Q ss_pred             hcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEe
Q 020565           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVE  109 (324)
Q Consensus        30 ~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~  109 (324)
                      ++.+|++||+| .|..+|..|+..|. .++.+|-                      ....++.+++    .    .+++.
T Consensus        16 ~~~kileIG~G-fG~~vA~~L~~~G~-~ViaIDi----------------------~~~aV~~a~~----~----~~~~v   63 (134)
T PRK04148         16 KNKKIVELGIG-FYFKVAKKLKESGF-DVIVIDI----------------------NEKAVEKAKK----L----GLNAF   63 (134)
T ss_pred             cCCEEEEEEec-CCHHHHHHHHHCCC-EEEEEEC----------------------CHHHHHHHHH----h----CCeEE
Confidence            44689999999 89999999999997 4888876                      2222222222    1    23455


Q ss_pred             eCCCCCCchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEeeecC
Q 020565          110 KGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRD  160 (324)
Q Consensus       110 ~~~~~~~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~~~~G  160 (324)
                      ..++.+-..+..+++|+|-...-+++....+-+++++  .+.+++-....|
T Consensus        64 ~dDlf~p~~~~y~~a~liysirpp~el~~~~~~la~~--~~~~~~i~~l~~  112 (134)
T PRK04148         64 VDDLFNPNLEIYKNAKLIYSIRPPRDLQPFILELAKK--INVPLIIKPLSG  112 (134)
T ss_pred             ECcCCCCCHHHHhcCCEEEEeCCCHHHHHHHHHHHHH--cCCCEEEEcCCC
Confidence            5566665677889999999999999999999999999  888887655444

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=97.27  E-value=0.00049  Score=65.80  Aligned_cols=76  Identities=21%  Similarity=0.158  Sum_probs=58.9

Q ss_pred             HHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEe
Q 020565           28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS  107 (324)
Q Consensus        28 ~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~  107 (324)
                      .|++++|+|||+|-+|.-++++|...|+..|+++-          |            -..||+.+++++.     ..+.
T Consensus       175 ~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaN----------R------------T~erA~~La~~~~-----~~~~  227 (414)
T COG0373         175 SLKDKKVLVIGAGEMGELVAKHLAEKGVKKITIAN----------R------------TLERAEELAKKLG-----AEAV  227 (414)
T ss_pred             ccccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEc----------C------------CHHHHHHHHHHhC-----Ceee
Confidence            48889999999999999999999999999999963          3            3447777777776     2222


Q ss_pred             EeeCCCCCCchhhcCCccEEEEcCCCHH
Q 020565          108 VEKGDLSSLDGEFYDKFDVVVVSCCSVT  135 (324)
Q Consensus       108 ~~~~~~~~~~~~~~~~~diVi~~~~~~~  135 (324)
                      ..     +...+.+.++|+||.++..+.
T Consensus       228 ~l-----~el~~~l~~~DvVissTsa~~  250 (414)
T COG0373         228 AL-----EELLEALAEADVVISSTSAPH  250 (414)
T ss_pred             cH-----HHHHHhhhhCCEEEEecCCCc
Confidence            21     223567889999999998654

>TIGR03882 cyclo_dehyd_2 bacteriocin biosynthesis cyclodehydratase domain

Probab=97.26  E-value=0.00016  Score=62.56  Aligned_cols=55  Identities=22%  Similarity=0.148  Sum_probs=48.4

Q ss_pred             hHHHHHHHhcCcEEEEcCchhHHH-HHHHHHHhCCCcE------EEE---cCCccccccCCCCcc
Q 020565           22 GADAQRRLSKSHILVCGMKGTVAE-FCKNIVLAGVGSL------TLM---DDRVVTEEAWSANFL   76 (324)
Q Consensus        22 g~~~q~~l~~~~VliiG~g~lGse-i~k~L~~~Gv~~i------~lv---D~d~v~~~nl~r~~l   76 (324)
                      ...+++++++++|.|+|.|+.|++ ++.+|+.+||+.+      ++|   |.+..+.+++|++++
T Consensus        96 ~~~a~~~l~~~~V~V~~~G~~~~~~l~~aLaa~Gv~~~~~~a~l~vVl~~Dyl~p~L~~~n~~~l  160 (193)
T TIGR03882        96 PAAALERLRQLTVTVLSFGEGGAAALAAALAAAGIRIAPSEADLTVVLTDDYLDPELAAINQRAL  160 (193)
T ss_pred             HHHHHHHHhcCcEEEEecCCCcHHHHHHHHHHcCCCccCCCCCEEEEEeCCCCChHHHHHHHHHH
Confidence            457899999999999999999998 9999999999988      888   888888888877654

This model describes a ThiF-like domain of a fusion protein found in clusters associated with the production of TOMMs (thiazole/oxazole-modified microcins), small bacteriocins with characteristic heterocycle modifications. This domain is presumed to act as a cyclodehydratase, as do members of the SagC family modeled by TIGR03603.

>PRK12749 quinate/shikimate dehydrogenase; Reviewed

Probab=97.26  E-value=0.0011  Score=61.01  Aligned_cols=84  Identities=12%  Similarity=0.105  Sum_probs=55.8

Q ss_pred             HhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeE
Q 020565           29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV  108 (324)
Q Consensus        29 l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~  108 (324)
                      ++.++|+|+|+||.+..++..|+..|+++++|++.+.              +     ...|++.+++.+....+ ..+..
T Consensus       122 ~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~--------------~-----~~~ka~~la~~~~~~~~-~~~~~  181 (288)
T PRK12749        122 IKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRD--------------E-----FFDKALAFAQRVNENTD-CVVTV  181 (288)
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc--------------c-----HHHHHHHHHHHhhhccC-ceEEE
Confidence            4667999999999999999999999999999987510              0     24588888887754332 22222


Q ss_pred             eeCCCCCCchhhcCCccEEEEcCC
Q 020565          109 EKGDLSSLDGEFYDKFDVVVVSCC  132 (324)
Q Consensus       109 ~~~~~~~~~~~~~~~~diVi~~~~  132 (324)
                      ....-.....+.+.++|+||+|+-
T Consensus       182 ~~~~~~~~l~~~~~~aDivINaTp  205 (288)
T PRK12749        182 TDLADQQAFAEALASADILTNGTK  205 (288)
T ss_pred             echhhhhhhhhhcccCCEEEECCC
Confidence            211100011224567899999873

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=97.18  E-value=0.0013  Score=60.19  Aligned_cols=75  Identities=17%  Similarity=0.228  Sum_probs=53.9

Q ss_pred             HhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeE
Q 020565           29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV  108 (324)
Q Consensus        29 l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~  108 (324)
                      +++++|+|+|+||+|..+++.|...|+.++++++.                      ...|++.+++.+....+ +.+  
T Consensus       121 ~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R----------------------~~~~a~~l~~~~~~~~~-~~~--  175 (278)
T PRK00258        121 LKGKRILILGAGGAARAVILPLLDLGVAEITIVNR----------------------TVERAEELAKLFGALGK-AEL--  175 (278)
T ss_pred             CCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeC----------------------CHHHHHHHHHHhhhccc-eee--
Confidence            56789999999999999999999999999999865                      23366666666653321 121  


Q ss_pred             eeCCCCCCchhhcCCccEEEEcCCC
Q 020565          109 EKGDLSSLDGEFYDKFDVVVVSCCS  133 (324)
Q Consensus       109 ~~~~~~~~~~~~~~~~diVi~~~~~  133 (324)
                       ..    ...+.+.++|+||+|+-.
T Consensus       176 -~~----~~~~~~~~~DivInaTp~  195 (278)
T PRK00258        176 -DL----ELQEELADFDLIINATSA  195 (278)
T ss_pred             -cc----cchhccccCCEEEECCcC
Confidence             11    113456789999999853

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=97.11  E-value=0.0018  Score=53.12  Aligned_cols=74  Identities=18%  Similarity=0.195  Sum_probs=55.7

Q ss_pred             cEEEEcC-chhHHHHHHHHHHhCCCc-EEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCC--eEeE
Q 020565           33 HILVCGM-KGTVAEFCKNIVLAGVGS-LTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMV--RVSV  108 (324)
Q Consensus        33 ~VliiG~-g~lGsei~k~L~~~Gv~~-i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v--~v~~  108 (324)
                      ||.|||+ |.+|+.++..|+..|+.+ +.|+|.                      ...|++..+.-|....+..  .+..
T Consensus         2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~----------------------~~~~~~g~a~Dl~~~~~~~~~~~~i   59 (141)
T PF00056_consen    2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDI----------------------NEDKAEGEALDLSHASAPLPSPVRI   59 (141)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEES----------------------SHHHHHHHHHHHHHHHHGSTEEEEE
T ss_pred             EEEEECCCChHHHHHHHHHHhCCCCCceEEecc----------------------Ccccceeeehhhhhhhhhccccccc
Confidence            7999999 999999999999999965 999987                      4446777777777664444  2333


Q ss_pred             eeCCCCCCchhhcCCccEEEEcCCC
Q 020565          109 EKGDLSSLDGEFYDKFDVVVVSCCS  133 (324)
Q Consensus       109 ~~~~~~~~~~~~~~~~diVi~~~~~  133 (324)
                      ..     ...+.++++|+||.+...
T Consensus        60 ~~-----~~~~~~~~aDivvitag~   79 (141)
T PF00056_consen   60 TS-----GDYEALKDADIVVITAGV   79 (141)
T ss_dssp             EE-----SSGGGGTTESEEEETTST
T ss_pred             cc-----ccccccccccEEEEeccc
Confidence            22     235568899999998764

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=97.07  E-value=0.00087  Score=56.30  Aligned_cols=114  Identities=16%  Similarity=0.164  Sum_probs=65.5

Q ss_pred             CcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEeeC
Q 020565           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKG  111 (324)
Q Consensus        32 ~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~~  111 (324)
                      .+|.+||+|..|+.+++||..+|.. ++++|.+.-....+...           |-..++...+.+++.  ++-+.....
T Consensus         2 ~~Ig~IGlG~mG~~~a~~L~~~g~~-v~~~d~~~~~~~~~~~~-----------g~~~~~s~~e~~~~~--dvvi~~v~~   67 (163)
T PF03446_consen    2 MKIGFIGLGNMGSAMARNLAKAGYE-VTVYDRSPEKAEALAEA-----------GAEVADSPAEAAEQA--DVVILCVPD   67 (163)
T ss_dssp             BEEEEE--SHHHHHHHHHHHHTTTE-EEEEESSHHHHHHHHHT-----------TEEEESSHHHHHHHB--SEEEE-SSS
T ss_pred             CEEEEEchHHHHHHHHHHHHhcCCe-EEeeccchhhhhhhHHh-----------hhhhhhhhhhHhhcc--cceEeeccc
Confidence            4799999999999999999999986 88888643222222211           111111222222322  232322221


Q ss_pred             C--CCCC-----chhhcCCccEEEEcC-CCHHHHHHHHHHHHhccCCccEEEeeecCc
Q 020565          112 D--LSSL-----DGEFYDKFDVVVVSC-CSVTTKKLINEKCRKLSKRVAFYTVDCRDS  161 (324)
Q Consensus       112 ~--~~~~-----~~~~~~~~diVi~~~-~~~~~~~~l~~~~~~~~~~ip~i~~~~~G~  161 (324)
                      .  ..+.     ....+..-.+||+++ .+++....+.+.+.+  +++.|+++...|.
T Consensus        68 ~~~v~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~--~g~~~vdapV~Gg  123 (163)
T PF03446_consen   68 DDAVEAVLFGENILAGLRPGKIIIDMSTISPETSRELAERLAA--KGVRYVDAPVSGG  123 (163)
T ss_dssp             HHHHHHHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHH--TTEEEEEEEEESH
T ss_pred             chhhhhhhhhhHHhhccccceEEEecCCcchhhhhhhhhhhhh--ccceeeeeeeecc
Confidence            1  1110     122334556777776 478888899999999  9999999998874

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=97.06  E-value=0.0011  Score=63.95  Aligned_cols=77  Identities=13%  Similarity=0.201  Sum_probs=54.8

Q ss_pred             HHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEe
Q 020565           28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS  107 (324)
Q Consensus        28 ~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~  107 (324)
                      .+.+++|+|+|+|+.|..++++|...|+.+|+++..                      -..|++.+++.+..    ..+.
T Consensus       178 ~l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nR----------------------t~~ra~~La~~~~~----~~~~  231 (414)
T PRK13940        178 NISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANR----------------------TIEKAQKITSAFRN----ASAH  231 (414)
T ss_pred             CccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECC----------------------CHHHHHHHHHHhcC----CeEe
Confidence            467889999999999999999999999999999644                      12255555554421    1111


Q ss_pred             EeeCCCCCCchhhcCCccEEEEcCCCHH
Q 020565          108 VEKGDLSSLDGEFYDKFDVVVVSCCSVT  135 (324)
Q Consensus       108 ~~~~~~~~~~~~~~~~~diVi~~~~~~~  135 (324)
                      .    + +...+.+.++|+||.|+..+.
T Consensus       232 ~----~-~~l~~~l~~aDiVI~aT~a~~  254 (414)
T PRK13940        232 Y----L-SELPQLIKKADIIIAAVNVLE  254 (414)
T ss_pred             c----H-HHHHHHhccCCEEEECcCCCC
Confidence            1    1 122566789999999998654

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

Probab=97.04  E-value=0.0023  Score=58.60  Aligned_cols=75  Identities=17%  Similarity=0.276  Sum_probs=55.9

Q ss_pred             hcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEe
Q 020565           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVE  109 (324)
Q Consensus        30 ~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~  109 (324)
                      +..+|+|+|+||.+..++..|+..|+.+|+|+..                      -..|++.+++.+.+..+.+.....
T Consensus       125 ~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NR----------------------t~~ra~~La~~~~~~~~~~~~~~~  182 (283)
T COG0169         125 TGKRVLILGAGGAARAVAFALAEAGAKRITVVNR----------------------TRERAEELADLFGELGAAVEAAAL  182 (283)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeC----------------------CHHHHHHHHHHhhhcccccccccc
Confidence            3588999999999999999999999999999755                      556888888888888763222111


Q ss_pred             eCCCCCCchhhcCCccEEEEcCC
Q 020565          110 KGDLSSLDGEFYDKFDVVVVSCC  132 (324)
Q Consensus       110 ~~~~~~~~~~~~~~~diVi~~~~  132 (324)
                          .+.  +...++|+||+|+-
T Consensus       183 ----~~~--~~~~~~dliINaTp  199 (283)
T COG0169         183 ----ADL--EGLEEADLLINATP  199 (283)
T ss_pred             ----ccc--ccccccCEEEECCC
Confidence                111  11116899999875

>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]

Probab=97.01  E-value=0.0037  Score=54.79  Aligned_cols=100  Identities=17%  Similarity=0.213  Sum_probs=70.8

Q ss_pred             HHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEe
Q 020565           28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS  107 (324)
Q Consensus        28 ~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~  107 (324)
                      .|++++|+|||.|.+|.-=++.|..+|.. ++++-++. .+ .           +            ..+.+.+   .+.
T Consensus         9 ~l~~k~VlvvGgG~va~rKa~~ll~~ga~-v~Vvs~~~-~~-e-----------l------------~~~~~~~---~i~   59 (210)
T COG1648           9 DLEGKKVLVVGGGSVALRKARLLLKAGAD-VTVVSPEF-EP-E-----------L------------KALIEEG---KIK   59 (210)
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHhcCCE-EEEEcCCc-cH-H-----------H------------HHHHHhc---Ccc
Confidence            36788999999999999999999999976 88876644 11 1           1            0111111   122


Q ss_pred             EeeCCCCCCchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEeeecCc
Q 020565          108 VEKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDS  161 (324)
Q Consensus       108 ~~~~~~~~~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~~~~G~  161 (324)
                      ....   ....+.+..+++||.++++.+....+.+.|++  +++|+-.+.--.+
T Consensus        60 ~~~~---~~~~~~~~~~~lviaAt~d~~ln~~i~~~a~~--~~i~vNv~D~p~~  108 (210)
T COG1648          60 WIER---EFDAEDLDDAFLVIAATDDEELNERIAKAARE--RRILVNVVDDPEL  108 (210)
T ss_pred             hhhc---ccChhhhcCceEEEEeCCCHHHHHHHHHHHHH--hCCceeccCCccc
Confidence            2222   23344556699999999999999999999999  8887766655444

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=96.94  E-value=0.0023  Score=52.85  Aligned_cols=35  Identities=14%  Similarity=0.358  Sum_probs=31.2

Q ss_pred             HhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565           29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        29 l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      ++..+|+|+|+|++|..+++.|...|...++++|.
T Consensus        17 ~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r   51 (155)
T cd01065          17 LKGKKVLILGAGGAARAVAYALAELGAAKIVIVNR   51 (155)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcC
Confidence            56789999999999999999999998667888876

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>PRK10637 cysG siroheme synthase; Provisional

Probab=96.93  E-value=0.0082  Score=58.94  Aligned_cols=97  Identities=14%  Similarity=0.217  Sum_probs=71.2

Q ss_pred             HHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEe
Q 020565           28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS  107 (324)
Q Consensus        28 ~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~  107 (324)
                      .|++.+|+|||.|.++..=++.|..+|. +++++-++.-                            +.++++-..-+++
T Consensus         9 ~l~~~~vlvvGgG~vA~rk~~~ll~~ga-~v~visp~~~----------------------------~~~~~l~~~~~i~   59 (457)
T PRK10637          9 QLRDRDCLLVGGGDVAERKARLLLDAGA-RLTVNALAFI----------------------------PQFTAWADAGMLT   59 (457)
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCCC----------------------------HHHHHHHhCCCEE
Confidence            4789999999999999999999999997 4888755311                            0112221122344


Q ss_pred             EeeCCCCCCchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEeee
Q 020565          108 VEKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDC  158 (324)
Q Consensus       108 ~~~~~~~~~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~~~  158 (324)
                      .....+   ..+.++++++||.|+++.+....|.+.|++  .++++-.+..
T Consensus        60 ~~~~~~---~~~dl~~~~lv~~at~d~~~n~~i~~~a~~--~~~lvN~~d~  105 (457)
T PRK10637         60 LVEGPF---DESLLDTCWLAIAATDDDAVNQRVSEAAEA--RRIFCNVVDA  105 (457)
T ss_pred             EEeCCC---ChHHhCCCEEEEECCCCHHHhHHHHHHHHH--cCcEEEECCC
Confidence            444443   356678999999999999999999999999  8887655543

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=96.88  E-value=0.0036  Score=58.13  Aligned_cols=75  Identities=23%  Similarity=0.316  Sum_probs=52.4

Q ss_pred             CcEEEEcCchhHHHHHHHHHHhCCC-cEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCC--eEeE
Q 020565           32 SHILVCGMKGTVAEFCKNIVLAGVG-SLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMV--RVSV  108 (324)
Q Consensus        32 ~~VliiG~g~lGsei~k~L~~~Gv~-~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v--~v~~  108 (324)
                      .+|.|||+|++|+.++..|+..|+. ++.++|.                      ...|++..+..|....+..  .+..
T Consensus         1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~----------------------~~~~~~~~a~dL~~~~~~~~~~~~i   58 (306)
T cd05291           1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDI----------------------NEEKAEGEALDLEDALAFLPSPVKI   58 (306)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeC----------------------CcchhhHhHhhHHHHhhccCCCeEE
Confidence            3799999999999999999999985 8999987                      3335555566665543211  1112


Q ss_pred             eeCCCCCCchhhcCCccEEEEcCCC
Q 020565          109 EKGDLSSLDGEFYDKFDVVVVSCCS  133 (324)
Q Consensus       109 ~~~~~~~~~~~~~~~~diVi~~~~~  133 (324)
                      ...     ..+.++++|+||.|+..
T Consensus        59 ~~~-----~~~~l~~aDIVIitag~   78 (306)
T cd05291          59 KAG-----DYSDCKDADIVVITAGA   78 (306)
T ss_pred             EcC-----CHHHhCCCCEEEEccCC
Confidence            111     12346899999999864

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=96.85  E-value=0.0069  Score=53.73  Aligned_cols=97  Identities=18%  Similarity=0.188  Sum_probs=61.4

Q ss_pred             CcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEeeC
Q 020565           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKG  111 (324)
Q Consensus        32 ~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~~  111 (324)
                      .+++|+|+|-+|..+|+.|+..|-. ++++|.|.-.                         +.+.+.+.   ....++..
T Consensus         1 m~iiIiG~G~vG~~va~~L~~~g~~-Vv~Id~d~~~-------------------------~~~~~~~~---~~~~~v~g   51 (225)
T COG0569           1 MKIIIIGAGRVGRSVARELSEEGHN-VVLIDRDEER-------------------------VEEFLADE---LDTHVVIG   51 (225)
T ss_pred             CEEEEECCcHHHHHHHHHHHhCCCc-eEEEEcCHHH-------------------------HHHHhhhh---cceEEEEe
Confidence            3689999999999999999999987 7777662211                         11111111   12222222


Q ss_pred             CCCC---CchhhcCCccEEEEcCCCHHHHHHHHHHH-HhccCCccEEEeeec
Q 020565          112 DLSS---LDGEFYDKFDVVVVSCCSVTTKKLINEKC-RKLSKRVAFYTVDCR  159 (324)
Q Consensus       112 ~~~~---~~~~~~~~~diVi~~~~~~~~~~~l~~~~-~~~~~~ip~i~~~~~  159 (324)
                      +-++   +.+.-+.++|++|.++++......+-..+ ..  .++|-+.+.+.
T Consensus        52 d~t~~~~L~~agi~~aD~vva~t~~d~~N~i~~~la~~~--~gv~~viar~~  101 (225)
T COG0569          52 DATDEDVLEEAGIDDADAVVAATGNDEVNSVLALLALKE--FGVPRVIARAR  101 (225)
T ss_pred             cCCCHHHHHhcCCCcCCEEEEeeCCCHHHHHHHHHHHHh--cCCCcEEEEec
Confidence            2221   22334689999999999877776666655 44  57887766654

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=96.81  E-value=0.0041  Score=57.89  Aligned_cols=93  Identities=13%  Similarity=0.065  Sum_probs=60.5

Q ss_pred             HHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeE
Q 020565           27 RRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRV  106 (324)
Q Consensus        27 ~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v  106 (324)
                      ..++.++|.|+|+|.+|.++++.|...|+. +..+|...-..           .     |                 +. 
T Consensus       132 ~~l~g~tvgIvG~G~IG~~vA~~l~afG~~-V~~~~~~~~~~-----------~-----~-----------------~~-  176 (312)
T PRK15469        132 YHREDFTIGILGAGVLGSKVAQSLQTWGFP-LRCWSRSRKSW-----------P-----G-----------------VQ-  176 (312)
T ss_pred             CCcCCCEEEEECCCHHHHHHHHHHHHCCCE-EEEEeCCCCCC-----------C-----C-----------------ce-
Confidence            357889999999999999999999999985 77777521000           0     0                 00 


Q ss_pred             eEeeCCCCCCchhhcCCccEEEEcC-CCHHHHHHHHHH-HHhccCCccEEEee
Q 020565          107 SVEKGDLSSLDGEFYDKFDVVVVSC-CSVTTKKLINEK-CRKLSKRVAFYTVD  157 (324)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~diVi~~~-~~~~~~~~l~~~-~~~~~~~ip~i~~~  157 (324)
                       ... .. ...+++++++|+|+.+. .+.+++..+++- ...++.+.-+|+++
T Consensus       177 -~~~-~~-~~l~e~l~~aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lIN~a  226 (312)
T PRK15469        177 -SFA-GR-EELSAFLSQTRVLINLLPNTPETVGIINQQLLEQLPDGAYLLNLA  226 (312)
T ss_pred             -eec-cc-ccHHHHHhcCCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEEECC
Confidence             000 01 12367788999998886 467788777753 33333455555554

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=96.76  E-value=0.0075  Score=56.25  Aligned_cols=75  Identities=20%  Similarity=0.275  Sum_probs=54.6

Q ss_pred             cCcEEEEcCchhHHHHHHHHHHhCCC-cEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCC-eEeE
Q 020565           31 KSHILVCGMKGTVAEFCKNIVLAGVG-SLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMV-RVSV  108 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~~~Gv~-~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v-~v~~  108 (324)
                      ..||.|||+|.+|+.++..|+..|+. +|.|+|-                      .+.|++..+--|....|.. ++..
T Consensus         6 ~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~----------------------~~~~~~g~~~Dl~~~~~~~~~~~i   63 (315)
T PRK00066          6 HNKVVLVGDGAVGSSYAYALVNQGIADELVIIDI----------------------NKEKAEGDAMDLSHAVPFTSPTKI   63 (315)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeC----------------------CCchhHHHHHHHHhhccccCCeEE
Confidence            46899999999999999999999986 6999876                      4445666666777766542 2222


Q ss_pred             eeCCCCCCchhhcCCccEEEEcCC
Q 020565          109 EKGDLSSLDGEFYDKFDVVVVSCC  132 (324)
Q Consensus       109 ~~~~~~~~~~~~~~~~diVi~~~~  132 (324)
                      ...     ..+.++++|+||.+..
T Consensus        64 ~~~-----~~~~~~~adivIitag   82 (315)
T PRK00066         64 YAG-----DYSDCKDADLVVITAG   82 (315)
T ss_pred             EeC-----CHHHhCCCCEEEEecC
Confidence            221     2345789999998765

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=96.76  E-value=0.006  Score=56.80  Aligned_cols=76  Identities=20%  Similarity=0.158  Sum_probs=54.2

Q ss_pred             HhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeE
Q 020565           29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV  108 (324)
Q Consensus        29 l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~  108 (324)
                      +...+|+|+|+|.+|..++++|...|..+++++|.                      ...|++.+++.+..     .+..
T Consensus       176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r----------------------~~~ra~~la~~~g~-----~~~~  228 (311)
T cd05213         176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANR----------------------TYERAEELAKELGG-----NAVP  228 (311)
T ss_pred             ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeC----------------------CHHHHHHHHHHcCC-----eEEe
Confidence            57899999999999999999999999999999876                      33345444444321     1111


Q ss_pred             eeCCCCCCchhhcCCccEEEEcCCCHHH
Q 020565          109 EKGDLSSLDGEFYDKFDVVVVSCCSVTT  136 (324)
Q Consensus       109 ~~~~~~~~~~~~~~~~diVi~~~~~~~~  136 (324)
                      .    + ...+.+.++|+||.|+.+...
T Consensus       229 ~----~-~~~~~l~~aDvVi~at~~~~~  251 (311)
T cd05213         229 L----D-ELLELLNEADVVISATGAPHY  251 (311)
T ss_pred             H----H-HHHHHHhcCCEEEECCCCCch
Confidence            1    1 123456789999999987665

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=96.71  E-value=0.0054  Score=51.15  Aligned_cols=106  Identities=12%  Similarity=0.114  Sum_probs=60.6

Q ss_pred             cEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEeeCC
Q 020565           33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGD  112 (324)
Q Consensus        33 ~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~~~  112 (324)
                      +|.|+|+|..|+.+|..|+..| .+++|+..+.-..+.++.+-.                    -....|.+++.. .-.
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g-~~V~l~~~~~~~~~~i~~~~~--------------------n~~~~~~~~l~~-~i~   58 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNG-HEVTLWGRDEEQIEEINETRQ--------------------NPKYLPGIKLPE-NIK   58 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCT-EEEEEETSCHHHHHHHHHHTS--------------------ETTTSTTSBEET-TEE
T ss_pred             CEEEECcCHHHHHHHHHHHHcC-CEEEEEeccHHHHHHHHHhCC--------------------CCCCCCCcccCc-ccc
Confidence            6899999999999999999999 568888775411111111000                    000112222211 011


Q ss_pred             CCCCchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEeeecCc
Q 020565          113 LSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDS  161 (324)
Q Consensus       113 ~~~~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~~~~G~  161 (324)
                      .+....+.+++.|+||.+.-+...+..+.++...+..+.++|.+ +-|+
T Consensus        59 ~t~dl~~a~~~ad~IiiavPs~~~~~~~~~l~~~l~~~~~ii~~-~KG~  106 (157)
T PF01210_consen   59 ATTDLEEALEDADIIIIAVPSQAHREVLEQLAPYLKKGQIIISA-TKGF  106 (157)
T ss_dssp             EESSHHHHHTT-SEEEE-S-GGGHHHHHHHHTTTSHTT-EEEET-S-SE
T ss_pred             cccCHHHHhCcccEEEecccHHHHHHHHHHHhhccCCCCEEEEe-cCCc
Confidence            12334567899999999999888777777776643356666643 3444

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=96.71  E-value=0.011  Score=54.93  Aligned_cols=33  Identities=12%  Similarity=0.125  Sum_probs=29.4

Q ss_pred             cCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d   64 (324)
                      ..||+|+|+|++|+.++-.|+++|. .+++++..
T Consensus         2 ~m~I~IiGaGaiG~~~a~~L~~~G~-~V~lv~r~   34 (305)
T PRK05708          2 SMTWHILGAGSLGSLWACRLARAGL-PVRLILRD   34 (305)
T ss_pred             CceEEEECCCHHHHHHHHHHHhCCC-CeEEEEec
Confidence            4579999999999999999999996 59998874

>PF02134 UBACT: Repeat in ubiquitin-activating (UBA) protein; InterPro: IPR000127 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]

Probab=96.63  E-value=0.0068  Score=43.03  Aligned_cols=56  Identities=16%  Similarity=0.205  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHh-cCCcccchhHHHHHHHHHHHHHHHhc
Q 020565          236 LPAVLKLKKELCEANALNASHVTDSLLERLII-GTREFTPVCAVVGGILGQEVIKAISC  293 (324)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~l~p~~av~Ggi~aqEviK~itg  293 (324)
                      .+-+...++-....+|++ . .+...+++++. .-|++.|..++++|++..|++|+++|
T Consensus        10 ~~fI~a~anLrA~~f~I~-~-~~~~~~~~i~~~iIP~~~~t~~iva~~~~~e~~k~~~~   66 (67)
T PF02134_consen   10 LDFIYAAANLRAQNFGIP-P-LDREEIKKIAGNIIPAFAPTNAIVAGIAVNELYKLLQN   66 (67)
T ss_dssp             HHHHHHHHHHHHHHTT-----S-HHHHHHHHTTEE-B-HHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHhCCC-c-ccHHHHHHHhcCcCCCcCCchhHHHHHHHHHHHHHHhc
Confidence            334445566677778887 3 88888999998 88999999999999999999999976

Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme is responsible for activating ubiquitin, the first step in ubiquitinylation. The E1 enzyme hydrolyses ATP and adenylates the C-terminal glycine residue of ubiquitin, and then links this residue to the active site cysteine of E1, yielding a ubiquitin-thioester and free AMP. To be fully active, E1 must non-covalently bind to and adenylate a second ubiquitin molecule. The E1 enzyme can then transfer the thioester-linked ubiquitin molecule to a cysteine residue on the ubiquitin-conjugating enzyme, E2, in an ATP-dependent reaction. This domain is found 2 times in each member of the ubiquitin activating enzymes and is located downstream of the active site cysteine [].; GO: 0005524 ATP binding, 0008641 small protein activating enzyme activity, 0006464 protein modification process; PDB: 1Z7L_A 3CMM_A 3GZN_D 3DBL_F 1R4N_H 1R4M_D 2NVU_B 1TT5_D 3DBR_D 3DBH_H ....

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=96.63  E-value=0.0071  Score=58.65  Aligned_cols=36  Identities=19%  Similarity=0.315  Sum_probs=33.1

Q ss_pred             HHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565           28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        28 ~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      .+.+.+|+|+|+|.+|..+++.|...|+.+++++|.
T Consensus       177 ~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~r  212 (417)
T TIGR01035       177 SLKGKKALLIGAGEMGELVAKHLLRKGVGKILIANR  212 (417)
T ss_pred             CccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeC
Confidence            367899999999999999999999999999999866

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=96.62  E-value=0.011  Score=54.85  Aligned_cols=74  Identities=15%  Similarity=0.246  Sum_probs=52.7

Q ss_pred             cEEEEcCchhHHHHHHHHHHhCC-CcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCC---eEeE
Q 020565           33 HILVCGMKGTVAEFCKNIVLAGV-GSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMV---RVSV  108 (324)
Q Consensus        33 ~VliiG~g~lGsei~k~L~~~Gv-~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v---~v~~  108 (324)
                      ||.|||+|.+|+.+|..|+..|+ +++.|+|-                      .+.|++..+--|....+..   ++..
T Consensus         1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di----------------------~~~~a~g~a~DL~~~~~~~~~~~~~i   58 (307)
T cd05290           1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDV----------------------NEGVAEGEALDFHHATALTYSTNTKI   58 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeC----------------------CcchhhHHHHHHHhhhccCCCCCEEE
Confidence            68999999999999999999998 57999886                      3345555556666654421   2333


Q ss_pred             eeCCCCCCchhhcCCccEEEEcCCC
Q 020565          109 EKGDLSSLDGEFYDKFDVVVVSCCS  133 (324)
Q Consensus       109 ~~~~~~~~~~~~~~~~diVi~~~~~  133 (324)
                      ...+     .+.++++|+||.+...
T Consensus        59 ~~~~-----y~~~~~aDivvitaG~   78 (307)
T cd05290          59 RAGD-----YDDCADADIIVITAGP   78 (307)
T ss_pred             EECC-----HHHhCCCCEEEECCCC
Confidence            3222     4668899999988763

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=96.61  E-value=0.0055  Score=46.30  Aligned_cols=90  Identities=14%  Similarity=0.196  Sum_probs=53.8

Q ss_pred             cEEEEcCchhHHHHHHHHHHhCC--CcEEEE-cCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEe
Q 020565           33 HILVCGMKGTVAEFCKNIVLAGV--GSLTLM-DDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVE  109 (324)
Q Consensus        33 ~VliiG~g~lGsei~k~L~~~Gv--~~i~lv-D~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~  109 (324)
                      ||.|||+|.+|..+++.|..+|+  .++.++ +.                      ...|++.    +.+..+ +.+.. 
T Consensus         1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r----------------------~~~~~~~----~~~~~~-~~~~~-   52 (96)
T PF03807_consen    1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSR----------------------SPEKAAE----LAKEYG-VQATA-   52 (96)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEES----------------------SHHHHHH----HHHHCT-TEEES-
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccC----------------------cHHHHHH----HHHhhc-ccccc-
Confidence            68999999999999999999994  234432 22                      2223332    333333 12111 


Q ss_pred             eCCCCCCchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEe
Q 020565          110 KGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTV  156 (324)
Q Consensus       110 ~~~~~~~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~  156 (324)
                           ....+.++..|+||.|..+......+.++ .....+..+|+.
T Consensus        53 -----~~~~~~~~~advvilav~p~~~~~v~~~i-~~~~~~~~vis~   93 (96)
T PF03807_consen   53 -----DDNEEAAQEADVVILAVKPQQLPEVLSEI-PHLLKGKLVISI   93 (96)
T ss_dssp             -----EEHHHHHHHTSEEEE-S-GGGHHHHHHHH-HHHHTTSEEEEE
T ss_pred             -----CChHHhhccCCEEEEEECHHHHHHHHHHH-hhccCCCEEEEe
Confidence                 12356677899999999887766666666 222245556654

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=96.59  E-value=0.024  Score=44.22  Aligned_cols=89  Identities=20%  Similarity=0.255  Sum_probs=58.4

Q ss_pred             EEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEeeCCC
Q 020565           34 ILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDL  113 (324)
Q Consensus        34 VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~~~~  113 (324)
                      |+|+|+|.+|.++++.|...| -.++++|.|.-                      ++    +.+++..    +.+...+.
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~-~~vvvid~d~~----------------------~~----~~~~~~~----~~~i~gd~   49 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGG-IDVVVIDRDPE----------------------RV----EELREEG----VEVIYGDA   49 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTT-SEEEEEESSHH----------------------HH----HHHHHTT----SEEEES-T
T ss_pred             eEEEcCCHHHHHHHHHHHhCC-CEEEEEECCcH----------------------HH----HHHHhcc----cccccccc
Confidence            689999999999999999955 46999988321                      21    1222222    22333444


Q ss_pred             CC---CchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccE
Q 020565          114 SS---LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAF  153 (324)
Q Consensus       114 ~~---~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~  153 (324)
                      .+   .....+++++.||.++++......+-..++++...++.
T Consensus        50 ~~~~~l~~a~i~~a~~vv~~~~~d~~n~~~~~~~r~~~~~~~i   92 (116)
T PF02254_consen   50 TDPEVLERAGIEKADAVVILTDDDEENLLIALLARELNPDIRI   92 (116)
T ss_dssp             TSHHHHHHTTGGCESEEEEESSSHHHHHHHHHHHHHHTTTSEE
T ss_pred             hhhhHHhhcCccccCEEEEccCCHHHHHHHHHHHHHHCCCCeE
Confidence            33   22345678999999999988888888888874444433

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=96.52  E-value=0.0093  Score=51.41  Aligned_cols=83  Identities=16%  Similarity=0.053  Sum_probs=54.7

Q ss_pred             HHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeE
Q 020565           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRV  106 (324)
Q Consensus        28 ~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v  106 (324)
                      .+++++++|+|. |++|..+++.|+..|. ++++++.                      ...|++.+.+.+.+.. ...+
T Consensus        25 ~l~~~~vlVlGgtG~iG~~~a~~l~~~g~-~V~l~~R----------------------~~~~~~~l~~~l~~~~-~~~~   80 (194)
T cd01078          25 DLKGKTAVVLGGTGPVGQRAAVLLAREGA-RVVLVGR----------------------DLERAQKAADSLRARF-GEGV   80 (194)
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcC----------------------CHHHHHHHHHHHHhhc-CCcE
Confidence            467899999996 9999999999999984 7888754                      2235666666665332 2233


Q ss_pred             eEeeCCCCCCchhhcCCccEEEEcCCCH
Q 020565          107 SVEKGDLSSLDGEFYDKFDVVVVSCCSV  134 (324)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~diVi~~~~~~  134 (324)
                      ......-.+...+.++++|+||.++...
T Consensus        81 ~~~~~~~~~~~~~~~~~~diVi~at~~g  108 (194)
T cd01078          81 GAVETSDDAARAAAIKGADVVFAAGAAG  108 (194)
T ss_pred             EEeeCCCHHHHHHHHhcCCEEEECCCCC
Confidence            3221110112235678899999988643

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=96.49  E-value=0.0063  Score=56.35  Aligned_cols=115  Identities=14%  Similarity=0.124  Sum_probs=70.6

Q ss_pred             cEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhh-CCCCeEeEeeC
Q 020565           33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDF-NPMVRVSVEKG  111 (324)
Q Consensus        33 ~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~l-np~v~v~~~~~  111 (324)
                      +|.|||+|.+|+.++.+|+..|.. ++++|.+.-....+..        .   |-..+....+.+... ++++-+...+.
T Consensus         2 ~Ig~IGlG~MG~~mA~~L~~~g~~-v~v~dr~~~~~~~~~~--------~---g~~~~~~~~e~~~~~~~~dvvi~~v~~   69 (301)
T PRK09599          2 QLGMIGLGRMGGNMARRLLRGGHE-VVGYDRNPEAVEALAE--------E---GATGADSLEELVAKLPAPRVVWLMVPA   69 (301)
T ss_pred             EEEEEcccHHHHHHHHHHHHCCCe-EEEEECCHHHHHHHHH--------C---CCeecCCHHHHHhhcCCCCEEEEEecC
Confidence            699999999999999999999975 8888885432222211        1   222121222223332 35554444433


Q ss_pred             C-C-CCCc---hhhcCCccEEEEcC-CCHHHHHHHHHHHHhccCCccEEEeeecCc
Q 020565          112 D-L-SSLD---GEFYDKFDVVVVSC-CSVTTKKLINEKCRKLSKRVAFYTVDCRDS  161 (324)
Q Consensus       112 ~-~-~~~~---~~~~~~~diVi~~~-~~~~~~~~l~~~~~~~~~~ip~i~~~~~G~  161 (324)
                      . . .+..   ...++.-++||+++ .++.....+.+.+++  .++.|+++.+.|.
T Consensus        70 ~~~~~~v~~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~--~g~~~~dapvsG~  123 (301)
T PRK09599         70 GEITDATIDELAPLLSPGDIVIDGGNSYYKDDIRRAELLAE--KGIHFVDVGTSGG  123 (301)
T ss_pred             CcHHHHHHHHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHH--cCCEEEeCCCCcC
Confidence            2 1 1111   12344557888875 456667778888988  8999999887764

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=96.48  E-value=0.0069  Score=49.79  Aligned_cols=89  Identities=16%  Similarity=0.141  Sum_probs=52.0

Q ss_pred             EEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhC-CCCeEeEeeCC
Q 020565           34 ILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFN-PMVRVSVEKGD  112 (324)
Q Consensus        34 VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~ln-p~v~v~~~~~~  112 (324)
                      |+|+|+|++|+.+|-.|..+|.. +++++... .                      .+.+.+.=-.+. +.-+.......
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~~-V~l~~r~~-~----------------------~~~~~~~g~~~~~~~~~~~~~~~~   56 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGHD-VTLVSRSP-R----------------------LEAIKEQGLTITGPDGDETVQPPI   56 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTCE-EEEEESHH-H----------------------HHHHHHHCEEEEETTEEEEEEEEE
T ss_pred             CEEECcCHHHHHHHHHHHHCCCc-eEEEEccc-c----------------------HHhhhheeEEEEecccceeccccc
Confidence            78999999999999999998886 88876633 2                      222111111110 01000000000


Q ss_pred             CCCCchhhcCCccEEEEcCCCHHHHHHHHHHHHh
Q 020565          113 LSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRK  146 (324)
Q Consensus       113 ~~~~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~  146 (324)
                      .........+.+|+||+|+-+.+....+..+...
T Consensus        57 ~~~~~~~~~~~~D~viv~vKa~~~~~~l~~l~~~   90 (151)
T PF02558_consen   57 VISAPSADAGPYDLVIVAVKAYQLEQALQSLKPY   90 (151)
T ss_dssp             EESSHGHHHSTESEEEE-SSGGGHHHHHHHHCTG
T ss_pred             ccCcchhccCCCcEEEEEecccchHHHHHHHhhc
Confidence            0001123567899999999988888777776544

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=96.33  E-value=0.016  Score=57.16  Aligned_cols=85  Identities=16%  Similarity=0.194  Sum_probs=68.6

Q ss_pred             HHHHHHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCC
Q 020565           24 DAQRRLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNP  102 (324)
Q Consensus        24 ~~q~~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp  102 (324)
                      .-+..+.+++|+|-|. |++|+|+++.++..+.++|.++|.                      +++|-..+...+++..|
T Consensus       243 ~i~~~~~gK~vLVTGagGSiGsel~~qil~~~p~~i~l~~~----------------------~E~~~~~i~~el~~~~~  300 (588)
T COG1086         243 LIGAMLTGKTVLVTGGGGSIGSELCRQILKFNPKEIILFSR----------------------DEYKLYLIDMELREKFP  300 (588)
T ss_pred             HHHhHcCCCEEEEeCCCCcHHHHHHHHHHhcCCCEEEEecC----------------------chHHHHHHHHHHHhhCC
Confidence            4467899999999997 569999999999999999999987                      67777778888888888


Q ss_pred             CCeEeEeeCCCCCC--chhhcCC--ccEEEEc
Q 020565          103 MVRVSVEKGDLSSL--DGEFYDK--FDVVVVS  130 (324)
Q Consensus       103 ~v~v~~~~~~~~~~--~~~~~~~--~diVi~~  130 (324)
                      ..++..+-.++.+.  ....+++  .|+|+-+
T Consensus       301 ~~~~~~~igdVrD~~~~~~~~~~~kvd~VfHA  332 (588)
T COG1086         301 ELKLRFYIGDVRDRDRVERAMEGHKVDIVFHA  332 (588)
T ss_pred             CcceEEEecccccHHHHHHHHhcCCCceEEEh
Confidence            88888877776652  3455566  7888843

>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]

Probab=96.32  E-value=0.017  Score=53.91  Aligned_cols=94  Identities=18%  Similarity=0.198  Sum_probs=60.5

Q ss_pred             HHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeE
Q 020565           27 RRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRV  106 (324)
Q Consensus        27 ~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v  106 (324)
                      ..++.++|.|+|+|++|.++|+.|...| ..|..-....                    .  +-+...    +.+..   
T Consensus       158 ~~~~gK~vgilG~G~IG~~ia~rL~~Fg-~~i~y~~r~~--------------------~--~~~~~~----~~~~~---  207 (336)
T KOG0069|consen  158 YDLEGKTVGILGLGRIGKAIAKRLKPFG-CVILYHSRTQ--------------------L--PPEEAY----EYYAE---  207 (336)
T ss_pred             ccccCCEEEEecCcHHHHHHHHhhhhcc-ceeeeecccC--------------------C--chhhHH----Hhccc---
Confidence            5789999999999999999999999977 4443321100                    1  111111    11111   


Q ss_pred             eEeeCCCCCCchhhcCCccEEEEcC-CCHHHHHHHHHH-HHhccCCccEEEee
Q 020565          107 SVEKGDLSSLDGEFYDKFDVVVVSC-CSVTTKKLINEK-CRKLSKRVAFYTVD  157 (324)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~diVi~~~-~~~~~~~~l~~~-~~~~~~~ip~i~~~  157 (324)
                             ....++++.++|+||.|. .+.+++..+|+. +.+++.+..+++++
T Consensus       208 -------~~d~~~~~~~sD~ivv~~pLt~~T~~liNk~~~~~mk~g~vlVN~a  253 (336)
T KOG0069|consen  208 -------FVDIEELLANSDVIVVNCPLTKETRHLINKKFIEKMKDGAVLVNTA  253 (336)
T ss_pred             -------ccCHHHHHhhCCEEEEecCCCHHHHHHhhHHHHHhcCCCeEEEecc
Confidence                   112367788999886655 788899889875 44545666666655

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.29  E-value=0.024  Score=55.41  Aligned_cols=95  Identities=20%  Similarity=0.238  Sum_probs=59.7

Q ss_pred             HhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeE
Q 020565           29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV  108 (324)
Q Consensus        29 l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~  108 (324)
                      +++++|+|+|.|++|..+|+.|+..|.. ++++|.+.-+                     ..+...+.|.+.+  ++  .
T Consensus         3 ~~~k~v~iiG~g~~G~~~A~~l~~~G~~-V~~~d~~~~~---------------------~~~~~~~~l~~~~--~~--~   56 (450)
T PRK14106          3 LKGKKVLVVGAGVSGLALAKFLKKLGAK-VILTDEKEED---------------------QLKEALEELGELG--IE--L   56 (450)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCE-EEEEeCCchH---------------------HHHHHHHHHHhcC--CE--E
Confidence            5789999999999999999999999975 9998773210                     1111123333332  22  2


Q ss_pred             eeCCCCCCchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEE
Q 020565          109 EKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYT  155 (324)
Q Consensus       109 ~~~~~~~~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~  155 (324)
                      .....   .++...++|+||.+....... .+-..|++  +++|++.
T Consensus        57 ~~~~~---~~~~~~~~d~vv~~~g~~~~~-~~~~~a~~--~~i~~~~   97 (450)
T PRK14106         57 VLGEY---PEEFLEGVDLVVVSPGVPLDS-PPVVQAHK--KGIEVIG   97 (450)
T ss_pred             EeCCc---chhHhhcCCEEEECCCCCCCC-HHHHHHHH--CCCcEEe
Confidence            22221   124456899999988643332 24556677  6776653

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]

Probab=96.23  E-value=0.017  Score=46.16  Aligned_cols=95  Identities=18%  Similarity=0.119  Sum_probs=56.9

Q ss_pred             cEEEEcC-chhHHHHHHHHHH-hCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEee
Q 020565           33 HILVCGM-KGTVAEFCKNIVL-AGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEK  110 (324)
Q Consensus        33 ~VliiG~-g~lGsei~k~L~~-~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~  110 (324)
                      ||.|+|+ |-+|..+++.+.. .|+.=.-.+|...   ++.      -..|+   |    +     +-.+. ...+..  
T Consensus         2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~---~~~------~g~d~---g----~-----~~~~~-~~~~~v--   57 (124)
T PF01113_consen    2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKP---SAK------VGKDV---G----E-----LAGIG-PLGVPV--   57 (124)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTT---STT------TTSBC---H----H-----HCTSS-T-SSBE--
T ss_pred             EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCC---ccc------ccchh---h----h-----hhCcC-Cccccc--
Confidence            7999999 9999999999999 6655444455532   000      01223   2    1     11111 111111  


Q ss_pred             CCCCCCchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEee
Q 020565          111 GDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVD  157 (324)
Q Consensus       111 ~~~~~~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~~  157 (324)
                         ....++.+..+|+||+.+ +++.....-++|.+  +++|++.+.
T Consensus        58 ---~~~l~~~~~~~DVvIDfT-~p~~~~~~~~~~~~--~g~~~ViGT   98 (124)
T PF01113_consen   58 ---TDDLEELLEEADVVIDFT-NPDAVYDNLEYALK--HGVPLVIGT   98 (124)
T ss_dssp             ---BS-HHHHTTH-SEEEEES--HHHHHHHHHHHHH--HT-EEEEE-
T ss_pred             ---chhHHHhcccCCEEEEcC-ChHHhHHHHHHHHh--CCCCEEEEC
Confidence               133466677799999999 77777778888988  899988544

In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....

>PLN00203 glutamyl-tRNA reductase

Probab=96.23  E-value=0.0079  Score=59.76  Aligned_cols=78  Identities=19%  Similarity=0.201  Sum_probs=53.6

Q ss_pred             HhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeE
Q 020565           29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV  108 (324)
Q Consensus        29 l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~  108 (324)
                      |...+|+|||+|.+|..++++|...|+.++++++.                      ...|++.+++.+    +.+.+..
T Consensus       264 l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nR----------------------s~era~~La~~~----~g~~i~~  317 (519)
T PLN00203        264 HASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNR----------------------SEERVAALREEF----PDVEIIY  317 (519)
T ss_pred             CCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeC----------------------CHHHHHHHHHHh----CCCceEe
Confidence            55799999999999999999999999988999765                      223555544443    2232222


Q ss_pred             eeCCCCCCchhhcCCccEEEEcCCCHH
Q 020565          109 EKGDLSSLDGEFYDKFDVVVVSCCSVT  135 (324)
Q Consensus       109 ~~~~~~~~~~~~~~~~diVi~~~~~~~  135 (324)
                      ..  + +...+.+.++|+||.|+....
T Consensus       318 ~~--~-~dl~~al~~aDVVIsAT~s~~  341 (519)
T PLN00203        318 KP--L-DEMLACAAEADVVFTSTSSET  341 (519)
T ss_pred             ec--H-hhHHHHHhcCCEEEEccCCCC
Confidence            11  1 122456789999999986433

>cd00300 LDH_like L-lactate dehydrogenase-like enzymes

Probab=96.22  E-value=0.021  Score=52.92  Aligned_cols=74  Identities=18%  Similarity=0.202  Sum_probs=52.7

Q ss_pred             EEEEcCchhHHHHHHHHHHhCC-CcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCC-eEeEeeC
Q 020565           34 ILVCGMKGTVAEFCKNIVLAGV-GSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMV-RVSVEKG  111 (324)
Q Consensus        34 VliiG~g~lGsei~k~L~~~Gv-~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v-~v~~~~~  111 (324)
                      |.|||+|.+|+.++-.|+..|+ .+++++|.                      .+.|++..+..|....+.. ...... 
T Consensus         1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~----------------------~~~~~~g~~~DL~~~~~~~~~~~i~~-   57 (300)
T cd00300           1 ITIIGAGNVGAAVAFALIAKGLASELVLVDV----------------------NEEKAKGDALDLSHASAFLATGTIVR-   57 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhcCCCCEEEEEeC----------------------CccHHHHHHHhHHHhccccCCCeEEE-
Confidence            5799999999999999999998 46999987                      4445666667777776542 111111 


Q ss_pred             CCCCCchhhcCCccEEEEcCCC
Q 020565          112 DLSSLDGEFYDKFDVVVVSCCS  133 (324)
Q Consensus       112 ~~~~~~~~~~~~~diVi~~~~~  133 (324)
                        .. ..+.++++|+||.|...
T Consensus        58 --~~-~~~~l~~aDiVIitag~   76 (300)
T cd00300          58 --GG-DYADAADADIVVITAGA   76 (300)
T ss_pred             --CC-CHHHhCCCCEEEEcCCC
Confidence              11 13568899999998763

Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.21  E-value=0.023  Score=53.03  Aligned_cols=111  Identities=10%  Similarity=0.002  Sum_probs=61.6

Q ss_pred             CcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEeeC
Q 020565           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKG  111 (324)
Q Consensus        32 ~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~~  111 (324)
                      ++|.|||+|.+|+.+|.+++.+|.. ++++|.+.-..+.               .+.+.+...+.+.+..+..  .....
T Consensus         8 ~~VaVIGaG~MG~giA~~~a~aG~~-V~l~D~~~~~~~~---------------~~~~i~~~~~~~~~~~~~~--~~~~~   69 (321)
T PRK07066          8 KTFAAIGSGVIGSGWVARALAHGLD-VVAWDPAPGAEAA---------------LRANVANAWPALERQGLAP--GASPA   69 (321)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCe-EEEEeCCHHHHHH---------------HHHHHHHHHHHHHHcCCCh--hhHHh
Confidence            5799999999999999999999987 8999874321111               1222222223332222110  00000


Q ss_pred             CC--CCCchhhcCCccEEEEcC-CCHHHHHHHH-HHHHhccCCccEEEeeecCc
Q 020565          112 DL--SSLDGEFYDKFDVVVVSC-CSVTTKKLIN-EKCRKLSKRVAFYTVDCRDS  161 (324)
Q Consensus       112 ~~--~~~~~~~~~~~diVi~~~-~~~~~~~~l~-~~~~~~~~~ip~i~~~~~G~  161 (324)
                      .+  .....+.++++|+|+.+. .+.+.+..+- ++....+.+. +|...+.++
T Consensus        70 ~i~~~~~l~~av~~aDlViEavpE~l~vK~~lf~~l~~~~~~~a-IlaSnTS~l  122 (321)
T PRK07066         70 RLRFVATIEACVADADFIQESAPEREALKLELHERISRAAKPDA-IIASSTSGL  122 (321)
T ss_pred             hceecCCHHHHhcCCCEEEECCcCCHHHHHHHHHHHHHhCCCCe-EEEECCCcc
Confidence            11  112345678999999886 4666554333 2222212233 666666665

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=96.16  E-value=0.034  Score=51.14  Aligned_cols=31  Identities=26%  Similarity=0.337  Sum_probs=28.0

Q ss_pred             cEEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565           33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (324)
Q Consensus        33 ~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d   64 (324)
                      +|+|+|+|++|+.++..|+.+|. +++++|.+
T Consensus         2 ~I~IiG~G~~G~~~a~~L~~~g~-~V~~~~r~   32 (304)
T PRK06522          2 KIAILGAGAIGGLFGAALAQAGH-DVTLVARR   32 (304)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCC-eEEEEECC
Confidence            69999999999999999999995 58998863

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=96.15  E-value=0.028  Score=52.34  Aligned_cols=74  Identities=16%  Similarity=0.208  Sum_probs=52.7

Q ss_pred             cCcEEEEcCchhHHHHHHHHHHhCCC-cEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCC---eE
Q 020565           31 KSHILVCGMKGTVAEFCKNIVLAGVG-SLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMV---RV  106 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~~~Gv~-~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v---~v  106 (324)
                      ..||.|||+|.+|+.++..|+..|.. ++.|+|-                      .+.|++..+.-|+...|..   ++
T Consensus         3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~----------------------~~~~~~g~a~Dl~~~~~~~~~~~v   60 (312)
T cd05293           3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDV----------------------VEDKLKGEAMDLQHGSAFLKNPKI   60 (312)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeC----------------------CccHHHHHHHHHHHhhccCCCCEE
Confidence            35899999999999999999999985 5999886                      3335555566666665432   22


Q ss_pred             eEeeCCCCCCchhhcCCccEEEEcCC
Q 020565          107 SVEKGDLSSLDGEFYDKFDVVVVSCC  132 (324)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~diVi~~~~  132 (324)
                      ... .     ..+.++++|+||.+..
T Consensus        61 ~~~-~-----dy~~~~~adivvitaG   80 (312)
T cd05293          61 EAD-K-----DYSVTANSKVVIVTAG   80 (312)
T ss_pred             EEC-C-----CHHHhCCCCEEEECCC
Confidence            221 1     1234899999998765

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK12550 shikimate 5-dehydrogenase; Reviewed

Probab=96.14  E-value=0.017  Score=52.72  Aligned_cols=33  Identities=15%  Similarity=0.152  Sum_probs=30.5

Q ss_pred             cCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      +.+|+|+|+||.+..++..|...|+.+++|++.
T Consensus       122 ~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR  154 (272)
T PRK12550        122 DLVVALRGSGGMAKAVAAALRDAGFTDGTIVAR  154 (272)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeC
Confidence            358999999999999999999999999999875

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=96.13  E-value=0.019  Score=53.67  Aligned_cols=35  Identities=23%  Similarity=0.320  Sum_probs=31.9

Q ss_pred             HhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565           29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        29 l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      ++..||.|||+|.+|+.++..++..|+.++.|+|-
T Consensus         4 ~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi   38 (321)
T PTZ00082          4 IKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDI   38 (321)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeC
Confidence            56689999999999999999999999866999987

>PTZ00117 malate dehydrogenase; Provisional

Probab=96.13  E-value=0.015  Score=54.30  Aligned_cols=35  Identities=17%  Similarity=0.236  Sum_probs=32.1

Q ss_pred             HhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565           29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        29 l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      .++.+|.|||+|.+|+.++..|+..|+..+.|+|-
T Consensus         3 ~~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di   37 (319)
T PTZ00117          3 VKRKKISMIGAGQIGSTVALLILQKNLGDVVLYDV   37 (319)
T ss_pred             CCCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEEC
Confidence            35679999999999999999999999888999997

>PLN02602 lactate dehydrogenase

Probab=96.12  E-value=0.024  Score=53.61  Aligned_cols=74  Identities=14%  Similarity=0.162  Sum_probs=52.4

Q ss_pred             CcEEEEcCchhHHHHHHHHHHhCCC-cEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCC---CeEe
Q 020565           32 SHILVCGMKGTVAEFCKNIVLAGVG-SLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPM---VRVS  107 (324)
Q Consensus        32 ~~VliiG~g~lGsei~k~L~~~Gv~-~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~---v~v~  107 (324)
                      .+|.|||+|.+|+.+|..|+..|+. ++.|+|-                      .+.|++..+--|+...|.   +++.
T Consensus        38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi----------------------~~~~~~g~a~DL~~~~~~~~~~~i~   95 (350)
T PLN02602         38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDV----------------------NPDKLRGEMLDLQHAAAFLPRTKIL   95 (350)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeC----------------------CCchhhHHHHHHHhhhhcCCCCEEE
Confidence            6999999999999999999999984 6999886                      333455555556655432   3332


Q ss_pred             EeeCCCCCCchhhcCCccEEEEcCCC
Q 020565          108 VEKGDLSSLDGEFYDKFDVVVVSCCS  133 (324)
Q Consensus       108 ~~~~~~~~~~~~~~~~~diVi~~~~~  133 (324)
                      .. .     ..+.++++|+||.+...
T Consensus        96 ~~-~-----dy~~~~daDiVVitAG~  115 (350)
T PLN02602         96 AS-T-----DYAVTAGSDLCIVTAGA  115 (350)
T ss_pred             eC-C-----CHHHhCCCCEEEECCCC
Confidence            21 1     13458899999998653

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=96.12  E-value=0.02  Score=53.19  Aligned_cols=29  Identities=24%  Similarity=0.328  Sum_probs=26.0

Q ss_pred             CcEEEEcCchhHHHHHHHHHHhCCCcEEEE
Q 020565           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLM   61 (324)
Q Consensus        32 ~~VliiG~g~lGsei~k~L~~~Gv~~i~lv   61 (324)
                      .||+|+|+|++|+..+-.|+++| ..++++
T Consensus         1 mkI~IlGaGAvG~l~g~~L~~~g-~~V~~~   29 (307)
T COG1893           1 MKILILGAGAIGSLLGARLAKAG-HDVTLL   29 (307)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCC-CeEEEE
Confidence            37999999999999999999999 767665

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.09  E-value=0.016  Score=53.29  Aligned_cols=32  Identities=16%  Similarity=0.217  Sum_probs=28.9

Q ss_pred             CcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (324)
Q Consensus        32 ~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d   64 (324)
                      .+|.|||+|.+|+.+|..|+..|.. ++++|.+
T Consensus         4 ~kIaViGaG~mG~~iA~~la~~G~~-V~l~d~~   35 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTAFHGFD-VTIYDIS   35 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCe-EEEEeCC
Confidence            5799999999999999999999975 9999863

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=96.09  E-value=0.038  Score=53.92  Aligned_cols=93  Identities=17%  Similarity=0.148  Sum_probs=61.5

Q ss_pred             HhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeE
Q 020565           29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV  108 (324)
Q Consensus        29 l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~  108 (324)
                      +...+|+|+|+|.+|..+++.|...|.. ++++|.+.                      .+.+    .+++..+.+.+  
T Consensus       229 ~~~~~iiIiG~G~~g~~l~~~L~~~~~~-v~vid~~~----------------------~~~~----~~~~~~~~~~~--  279 (453)
T PRK09496        229 KPVKRVMIVGGGNIGYYLAKLLEKEGYS-VKLIERDP----------------------ERAE----ELAEELPNTLV--  279 (453)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCe-EEEEECCH----------------------HHHH----HHHHHCCCCeE--
Confidence            5678999999999999999999999986 88887632                      1222    22222223322  


Q ss_pred             eeCCCCC---CchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCcc
Q 020565          109 EKGDLSS---LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVA  152 (324)
Q Consensus       109 ~~~~~~~---~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip  152 (324)
                      ...+...   .....++++|.||.++++......+...|++  .+.+
T Consensus       280 i~gd~~~~~~L~~~~~~~a~~vi~~~~~~~~n~~~~~~~~~--~~~~  324 (453)
T PRK09496        280 LHGDGTDQELLEEEGIDEADAFIALTNDDEANILSSLLAKR--LGAK  324 (453)
T ss_pred             EECCCCCHHHHHhcCCccCCEEEECCCCcHHHHHHHHHHHH--hCCC
Confidence            2222222   2234467899999998877777777777888  5544

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.07  E-value=0.016  Score=53.27  Aligned_cols=33  Identities=18%  Similarity=0.191  Sum_probs=29.8

Q ss_pred             CcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCc
Q 020565           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV   65 (324)
Q Consensus        32 ~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~   65 (324)
                      ++|.|||+|..|+.+|.+|+++|.. ++++|.+.
T Consensus         6 ~~V~ViGaG~mG~~iA~~~a~~G~~-V~l~d~~~   38 (286)
T PRK07819          6 QRVGVVGAGQMGAGIAEVCARAGVD-VLVFETTE   38 (286)
T ss_pred             cEEEEEcccHHHHHHHHHHHhCCCE-EEEEECCH
Confidence            4799999999999999999999986 99998743

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=96.05  E-value=0.032  Score=51.82  Aligned_cols=31  Identities=19%  Similarity=0.153  Sum_probs=28.1

Q ss_pred             cEEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565           33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (324)
Q Consensus        33 ~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d   64 (324)
                      +|.|||+|.+|+.++.+|+..|.. ++++|.+
T Consensus         3 kI~iiG~G~mG~~~a~~L~~~g~~-V~~~~r~   33 (325)
T PRK00094          3 KIAVLGAGSWGTALAIVLARNGHD-VTLWARD   33 (325)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCE-EEEEECC
Confidence            699999999999999999999975 8888774

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.04  E-value=0.037  Score=51.35  Aligned_cols=31  Identities=13%  Similarity=0.221  Sum_probs=28.1

Q ss_pred             CcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        32 ~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      .+|.|||+|.+|+.++..|+.+|. +++++|.
T Consensus         5 ~~I~vIGaG~mG~~iA~~l~~~g~-~V~~~d~   35 (311)
T PRK06130          5 QNLAIIGAGTMGSGIAALFARKGL-QVVLIDV   35 (311)
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCC-eEEEEEC
Confidence            479999999999999999999997 4888886

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=96.04  E-value=0.038  Score=56.43  Aligned_cols=91  Identities=16%  Similarity=0.204  Sum_probs=63.0

Q ss_pred             cCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEee
Q 020565           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEK  110 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~  110 (324)
                      +.+|+|+|+|.+|..+++.|...|+. ++++|.|.-                      +++.+    ++.  ..+  ++.
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g~~-vvvID~d~~----------------------~v~~~----~~~--g~~--v~~  448 (621)
T PRK03562        400 QPRVIIAGFGRFGQIVGRLLLSSGVK-MTVLDHDPD----------------------HIETL----RKF--GMK--VFY  448 (621)
T ss_pred             cCcEEEEecChHHHHHHHHHHhCCCC-EEEEECCHH----------------------HHHHH----Hhc--CCe--EEE
Confidence            57999999999999999999999986 889888432                      22222    221  122  233


Q ss_pred             CCCCC---CchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCcc
Q 020565          111 GDLSS---LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVA  152 (324)
Q Consensus       111 ~~~~~---~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip  152 (324)
                      .+.++   ....-+++++.||.++++.+....+-..+|+...+++
T Consensus       449 GDat~~~~L~~agi~~A~~vvv~~~d~~~n~~i~~~ar~~~p~~~  493 (621)
T PRK03562        449 GDATRMDLLESAGAAKAEVLINAIDDPQTSLQLVELVKEHFPHLQ  493 (621)
T ss_pred             EeCCCHHHHHhcCCCcCCEEEEEeCCHHHHHHHHHHHHHhCCCCe
Confidence            33222   1234467899999999999998888888888433443

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=96.03  E-value=0.037  Score=51.34  Aligned_cols=33  Identities=15%  Similarity=0.226  Sum_probs=28.9

Q ss_pred             cCcEEEEcCchhHHHHHHHHHHhCC-CcEEEEcC
Q 020565           31 KSHILVCGMKGTVAEFCKNIVLAGV-GSLTLMDD   63 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~~~Gv-~~i~lvD~   63 (324)
                      ..+|+|||+|.+|..++..|...|. .+++++|.
T Consensus         6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr   39 (307)
T PRK07502          6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADR   39 (307)
T ss_pred             CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEEC
Confidence            3579999999999999999999997 36888776

>PRK13403 ketol-acid reductoisomerase; Provisional

Probab=96.02  E-value=0.021  Score=53.05  Aligned_cols=37  Identities=16%  Similarity=0.116  Sum_probs=32.8

Q ss_pred             HHHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565           26 QRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        26 q~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      ...|++++|.|||+|.+|..+|+||..+|+. +++.|.
T Consensus        11 ~~~LkgKtVGIIG~GsIG~amA~nL~d~G~~-ViV~~r   47 (335)
T PRK13403         11 VELLQGKTVAVIGYGSQGHAQAQNLRDSGVE-VVVGVR   47 (335)
T ss_pred             hhhhCcCEEEEEeEcHHHHHHHHHHHHCcCE-EEEEEC
Confidence            4779999999999999999999999999995 666653

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=95.98  E-value=0.012  Score=57.20  Aligned_cols=35  Identities=26%  Similarity=0.331  Sum_probs=32.4

Q ss_pred             HhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565           29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        29 l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      +...+|+|+|+|.+|..+++.|...|+.+++++|.
T Consensus       180 ~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r  214 (423)
T PRK00045        180 LSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANR  214 (423)
T ss_pred             ccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeC
Confidence            67799999999999999999999999998999866

>PRK08618 ornithine cyclodeaminase; Validated

Probab=95.98  E-value=0.032  Score=52.29  Aligned_cols=78  Identities=10%  Similarity=0.126  Sum_probs=56.4

Q ss_pred             hcCcEEEEcCchhHHHHHHHHH-HhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeE
Q 020565           30 SKSHILVCGMKGTVAEFCKNIV-LAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV  108 (324)
Q Consensus        30 ~~~~VliiG~g~lGsei~k~L~-~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~  108 (324)
                      ...+++|+|+|+.|...+..+. ..|+.++.++|.                      ...|++.+++.+++..+ +++..
T Consensus       126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r----------------------~~~~a~~~~~~~~~~~~-~~~~~  182 (325)
T PRK08618        126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSR----------------------TFEKAYAFAQEIQSKFN-TEIYV  182 (325)
T ss_pred             CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECC----------------------CHHHHHHHHHHHHHhcC-CcEEE
Confidence            4578999999999998888875 568999999876                      45577777777765432 33332


Q ss_pred             eeCCCCCCchhhcCCccEEEEcCCCHH
Q 020565          109 EKGDLSSLDGEFYDKFDVVVVSCCSVT  135 (324)
Q Consensus       109 ~~~~~~~~~~~~~~~~diVi~~~~~~~  135 (324)
                      .     +..++.++++|+||.|+-+..
T Consensus       183 ~-----~~~~~~~~~aDiVi~aT~s~~  204 (325)
T PRK08618        183 V-----NSADEAIEEADIIVTVTNAKT  204 (325)
T ss_pred             e-----CCHHHHHhcCCEEEEccCCCC
Confidence            2     123556789999999997653

>PRK11880 pyrroline-5-carboxylate reductase; Reviewed

Probab=95.95  E-value=0.051  Score=49.19  Aligned_cols=32  Identities=16%  Similarity=0.231  Sum_probs=26.3

Q ss_pred             CcEEEEcCchhHHHHHHHHHHhCC--CcEEEEcC
Q 020565           32 SHILVCGMKGTVAEFCKNIVLAGV--GSLTLMDD   63 (324)
Q Consensus        32 ~~VliiG~g~lGsei~k~L~~~Gv--~~i~lvD~   63 (324)
                      .+|.|||+|.+|+.++..|...|.  ..+.++|.
T Consensus         3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r   36 (267)
T PRK11880          3 KKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDP   36 (267)
T ss_pred             CEEEEEechHHHHHHHHHHHhCCCCcceEEEEcC
Confidence            469999999999999999999984  34566554

>PRK06141 ornithine cyclodeaminase; Validated

Probab=95.94  E-value=0.031  Score=52.08  Aligned_cols=77  Identities=13%  Similarity=0.065  Sum_probs=56.5

Q ss_pred             HhcCcEEEEcCchhHHHHHHHHHH-hCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEe
Q 020565           29 LSKSHILVCGMKGTVAEFCKNIVL-AGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS  107 (324)
Q Consensus        29 l~~~~VliiG~g~lGsei~k~L~~-~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~  107 (324)
                      ...++|+|||+|..|...++.+.+ .|+.++++++.                      ...|++.+++.+++...  .+.
T Consensus       123 ~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~R----------------------s~~~a~~~a~~~~~~g~--~~~  178 (314)
T PRK06141        123 KDASRLLVVGTGRLASLLALAHASVRPIKQVRVWGR----------------------DPAKAEALAAELRAQGF--DAE  178 (314)
T ss_pred             CCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcC----------------------CHHHHHHHHHHHHhcCC--ceE
Confidence            346899999999999999987765 68888999865                      55678888888776422  222


Q ss_pred             EeeCCCCCCchhhcCCccEEEEcCCCH
Q 020565          108 VEKGDLSSLDGEFYDKFDVVVVSCCSV  134 (324)
Q Consensus       108 ~~~~~~~~~~~~~~~~~diVi~~~~~~  134 (324)
                      ..     ....+.+.++|+||.|+.+.
T Consensus       179 ~~-----~~~~~av~~aDIVi~aT~s~  200 (314)
T PRK06141        179 VV-----TDLEAAVRQADIISCATLST  200 (314)
T ss_pred             Ee-----CCHHHHHhcCCEEEEeeCCC
Confidence            21     22355678999999888754

>PRK07574 formate dehydrogenase; Provisional

Probab=95.93  E-value=0.028  Score=53.85  Aligned_cols=95  Identities=14%  Similarity=0.175  Sum_probs=59.9

Q ss_pred             HHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeE
Q 020565           27 RRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRV  106 (324)
Q Consensus        27 ~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v  106 (324)
                      ..|..++|.|||+|.+|..+|+.|...|+. +..+|......            +.              ..+.    .+
T Consensus       188 ~~L~gktVGIvG~G~IG~~vA~~l~~fG~~-V~~~dr~~~~~------------~~--------------~~~~----g~  236 (385)
T PRK07574        188 YDLEGMTVGIVGAGRIGLAVLRRLKPFDVK-LHYTDRHRLPE------------EV--------------EQEL----GL  236 (385)
T ss_pred             eecCCCEEEEECCCHHHHHHHHHHHhCCCE-EEEECCCCCch------------hh--------------Hhhc----Cc
Confidence            458999999999999999999999999985 77777522100            00              0011    11


Q ss_pred             eEeeCCCCCCchhhcCCccEEEEcC-CCHHHHHHHHHHH-HhccCCccEEEee
Q 020565          107 SVEKGDLSSLDGEFYDKFDVVVVSC-CSVTTKKLINEKC-RKLSKRVAFYTVD  157 (324)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~diVi~~~-~~~~~~~~l~~~~-~~~~~~ip~i~~~  157 (324)
                      ...     ...++.++.+|+|+.+. .+.+++..+++-. ..++.+.-+|+++
T Consensus       237 ~~~-----~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~a  284 (385)
T PRK07574        237 TYH-----VSFDSLVSVCDVVTIHCPLHPETEHLFDADVLSRMKRGSYLVNTA  284 (385)
T ss_pred             eec-----CCHHHHhhcCCEEEEcCCCCHHHHHHhCHHHHhcCCCCcEEEECC
Confidence            111     12367788899987776 5677777777532 2223444455544

>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase

Probab=95.92  E-value=0.046  Score=58.43  Aligned_cols=25  Identities=8%  Similarity=0.146  Sum_probs=22.5

Q ss_pred             hcCcEEEEcCchhHHHHHHHHHHhC
Q 020565           30 SKSHILVCGMKGTVAEFCKNIVLAG   54 (324)
Q Consensus        30 ~~~~VliiG~g~lGsei~k~L~~~G   54 (324)
                      +.++|+|+|+|.+|..++.+|++.+
T Consensus       568 ~~~rIlVLGAG~VG~~~a~~La~~~  592 (1042)
T PLN02819        568 KSQNVLILGAGRVCRPAAEYLASVK  592 (1042)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHhCc
Confidence            4679999999999999999998863

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=95.90  E-value=0.0095  Score=52.85  Aligned_cols=37  Identities=14%  Similarity=0.389  Sum_probs=35.0

Q ss_pred             HHhcCcEEEEcCchhHHHHHHHHHHhCCC--cEEEEcCC
Q 020565           28 RLSKSHILVCGMKGTVAEFCKNIVLAGVG--SLTLMDDR   64 (324)
Q Consensus        28 ~l~~~~VliiG~g~lGsei~k~L~~~Gv~--~i~lvD~d   64 (324)
                      .+++.+|+|+|+|+.|..+++.|+..|+.  +|+++|.+
T Consensus        22 ~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~   60 (226)
T cd05311          22 KIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSK   60 (226)
T ss_pred             CccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCC
Confidence            57889999999999999999999999999  99999985

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>PRK05479 ketol-acid reductoisomerase; Provisional

Probab=95.89  E-value=0.023  Score=53.14  Aligned_cols=35  Identities=11%  Similarity=0.115  Sum_probs=30.3

Q ss_pred             HHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEc
Q 020565           27 RRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMD   62 (324)
Q Consensus        27 ~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD   62 (324)
                      ..|++++|.|||+|.+|..++++|..+|+. +.+.+
T Consensus        13 ~~L~gktIgIIG~GsmG~AlA~~L~~sG~~-Vvv~~   47 (330)
T PRK05479         13 SLIKGKKVAIIGYGSQGHAHALNLRDSGVD-VVVGL   47 (330)
T ss_pred             hhhCCCEEEEEeeHHHHHHHHHHHHHCCCE-EEEEE
Confidence            568889999999999999999999999984 55544

>TIGR02992 ectoine_eutC ectoine utilization protein EutC

Probab=95.88  E-value=0.036  Score=51.96  Aligned_cols=75  Identities=13%  Similarity=0.100  Sum_probs=56.5

Q ss_pred             cCcEEEEcCchhHHHHHHHHH-HhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEe
Q 020565           31 KSHILVCGMKGTVAEFCKNIV-LAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVE  109 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~-~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~  109 (324)
                      .++++|+|+|+.|...++.|. ..|+.++++++.                      ...|++.+++++++..+ +++...
T Consensus       129 ~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R----------------------~~~~a~~~a~~~~~~~g-~~v~~~  185 (326)
T TIGR02992       129 SSVVAIFGAGMQARLQLEALTLVRDIRSARIWAR----------------------DSAKAEALALQLSSLLG-IDVTAA  185 (326)
T ss_pred             CcEEEEECCCHHHHHHHHHHHHhCCccEEEEECC----------------------CHHHHHHHHHHHHhhcC-ceEEEe
Confidence            458999999999999999997 578899999865                      55588888888865433 333322


Q ss_pred             eCCCCCCchhhcCCccEEEEcCCC
Q 020565          110 KGDLSSLDGEFYDKFDVVVVSCCS  133 (324)
Q Consensus       110 ~~~~~~~~~~~~~~~diVi~~~~~  133 (324)
                           +...+.+.++|+||.|+.+
T Consensus       186 -----~~~~~av~~aDiVvtaT~s  204 (326)
T TIGR02992       186 -----TDPRAAMSGADIIVTTTPS  204 (326)
T ss_pred             -----CCHHHHhccCCEEEEecCC
Confidence                 2235567899999999866

Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=95.86  E-value=0.064  Score=45.22  Aligned_cols=95  Identities=23%  Similarity=0.215  Sum_probs=61.3

Q ss_pred             EEEEcC-chhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEeeCC
Q 020565           34 ILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGD  112 (324)
Q Consensus        34 VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~~~  112 (324)
                      |+|+|+ |.+|..+++.|...|. +++.+=.                      ...|.+.        .+  .++....+
T Consensus         1 I~V~GatG~vG~~l~~~L~~~~~-~V~~~~R----------------------~~~~~~~--------~~--~~~~~~~d   47 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRRGH-EVTALVR----------------------SPSKAED--------SP--GVEIIQGD   47 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTS-EEEEEES----------------------SGGGHHH--------CT--TEEEEESC
T ss_pred             eEEECCCChHHHHHHHHHHHCCC-EEEEEec----------------------Cchhccc--------cc--ccccceee
Confidence            789997 8899999999999994 4665322                      2222222        33  44455555


Q ss_pred             CCCC--chhhcCCccEEEEcCCC----HHHHHHHHHHHHhccCCcc-EEEeeecCceE
Q 020565          113 LSSL--DGEFYDKFDVVVVSCCS----VTTKKLINEKCRKLSKRVA-FYTVDCRDSCG  163 (324)
Q Consensus       113 ~~~~--~~~~~~~~diVi~~~~~----~~~~~~l~~~~~~~~~~ip-~i~~~~~G~~g  163 (324)
                      +.+.  ....++++|.||.+...    ......+-+.|++  .+++ ++..++.|.++
T Consensus        48 ~~d~~~~~~al~~~d~vi~~~~~~~~~~~~~~~~~~a~~~--~~~~~~v~~s~~~~~~  103 (183)
T PF13460_consen   48 LFDPDSVKAALKGADAVIHAAGPPPKDVDAAKNIIEAAKK--AGVKRVVYLSSAGVYR  103 (183)
T ss_dssp             TTCHHHHHHHHTTSSEEEECCHSTTTHHHHHHHHHHHHHH--TTSSEEEEEEETTGTT
T ss_pred             ehhhhhhhhhhhhcchhhhhhhhhcccccccccccccccc--cccccceeeeccccCC
Confidence            5442  35667899999998753    3344567778877  6664 45555555444

...

>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

Probab=95.85  E-value=0.019  Score=53.67  Aligned_cols=108  Identities=19%  Similarity=0.176  Sum_probs=66.6

Q ss_pred             HhHHHHHh--hhHHH--HHHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCcc
Q 020565           13 LYDRQIRV--WGADA--QRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKT   88 (324)
Q Consensus        13 ry~Rqi~l--~g~~~--q~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~   88 (324)
                      .|+++.+-  |-...  ...|..++|.|||+|.+|+.+++.|...|+. +..+|+-.-....               +. 
T Consensus       120 ~~~~~~~~g~W~~~~~~g~el~gkTvGIiG~G~IG~~va~~l~afgm~-v~~~d~~~~~~~~---------------~~-  182 (324)
T COG0111         120 DADASQRRGEWDRKAFRGTELAGKTVGIIGLGRIGRAVAKRLKAFGMK-VIGYDPYSPRERA---------------GV-  182 (324)
T ss_pred             hhHHHHHcCCccccccccccccCCEEEEECCCHHHHHHHHHHHhCCCe-EEEECCCCchhhh---------------cc-
Confidence            35555544  44311  2367899999999999999999999999997 8888872221100               00 


Q ss_pred             HHHHHHHHHHhhCCCCeEeEeeCCCCCCchhhcCCccEEEEcC-CCHHHHHHHHHHH-HhccCCccEEEee
Q 020565           89 IAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEFYDKFDVVVVSC-CSVTTKKLINEKC-RKLSKRVAFYTVD  157 (324)
Q Consensus        89 ka~~~~~~l~~lnp~v~v~~~~~~~~~~~~~~~~~~diVi~~~-~~~~~~~~l~~~~-~~~~~~ip~i~~~  157 (324)
                                     ..+.     .....+++++..|+|++.. .+.+++-.|+..- .+++.+.-||+++
T Consensus       183 ---------------~~~~-----~~~~Ld~lL~~sDiv~lh~PlT~eT~g~i~~~~~a~MK~gailIN~a  233 (324)
T COG0111         183 ---------------DGVV-----GVDSLDELLAEADILTLHLPLTPETRGLINAEELAKMKPGAILINAA  233 (324)
T ss_pred             ---------------ccce-----ecccHHHHHhhCCEEEEcCCCCcchhcccCHHHHhhCCCCeEEEECC
Confidence                           0000     0012367778888887665 4677777776542 3333555566655

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=95.84  E-value=0.05  Score=55.33  Aligned_cols=93  Identities=14%  Similarity=0.304  Sum_probs=63.6

Q ss_pred             cCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEee
Q 020565           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEK  110 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~  110 (324)
                      +.+|+|+|+|.+|..+++.|...|+. ++++|.|.-                      +++.    +++..    ..++.
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g~~-vvvID~d~~----------------------~v~~----~~~~g----~~v~~  448 (601)
T PRK03659        400 KPQVIIVGFGRFGQVIGRLLMANKMR-ITVLERDIS----------------------AVNL----MRKYG----YKVYY  448 (601)
T ss_pred             cCCEEEecCchHHHHHHHHHHhCCCC-EEEEECCHH----------------------HHHH----HHhCC----CeEEE
Confidence            57999999999999999999999996 899988432                      2222    22211    12222


Q ss_pred             CCCCC---CchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEE
Q 020565          111 GDLSS---LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFY  154 (324)
Q Consensus       111 ~~~~~---~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i  154 (324)
                      .+.++   ....-++++|.||.++++.+....+-..+|+...+.+.|
T Consensus       449 GDat~~~~L~~agi~~A~~vv~~~~d~~~n~~i~~~~r~~~p~~~Ii  495 (601)
T PRK03659        449 GDATQLELLRAAGAEKAEAIVITCNEPEDTMKIVELCQQHFPHLHIL  495 (601)
T ss_pred             eeCCCHHHHHhcCCccCCEEEEEeCCHHHHHHHHHHHHHHCCCCeEE
Confidence            23222   123346789999999999998888888888743344444

>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate

Probab=95.84  E-value=0.1  Score=41.33  Aligned_cols=95  Identities=19%  Similarity=0.164  Sum_probs=53.8

Q ss_pred             cEEEEc-CchhHHHHHHHHHHhCCCcEEE-EcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEee
Q 020565           33 HILVCG-MKGTVAEFCKNIVLAGVGSLTL-MDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEK  110 (324)
Q Consensus        33 ~VliiG-~g~lGsei~k~L~~~Gv~~i~l-vD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~  110 (324)
                      ||.|+| .|-+|.++++.|...---+++. +..               ....   |+.-.+...    .......+....
T Consensus         1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~---------------~~~~---g~~~~~~~~----~~~~~~~~~~~~   58 (121)
T PF01118_consen    1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSS---------------SRSA---GKPLSEVFP----HPKGFEDLSVED   58 (121)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEES---------------TTTT---TSBHHHTTG----GGTTTEEEBEEE
T ss_pred             CEEEECCCCHHHHHHHHHHhcCCCccEEEeeee---------------cccc---CCeeehhcc----ccccccceeEee
Confidence            689999 7889999999999832222222 222               1113   553332211    111122333322


Q ss_pred             CCCCCCchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEee
Q 020565          111 GDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVD  157 (324)
Q Consensus       111 ~~~~~~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~~  157 (324)
                           ...+.+++.|+||.|+++.........+ .+  .++++|+.+
T Consensus        59 -----~~~~~~~~~Dvvf~a~~~~~~~~~~~~~-~~--~g~~ViD~s   97 (121)
T PF01118_consen   59 -----ADPEELSDVDVVFLALPHGASKELAPKL-LK--AGIKVIDLS   97 (121)
T ss_dssp             -----TSGHHHTTESEEEE-SCHHHHHHHHHHH-HH--TTSEEEESS
T ss_pred             -----cchhHhhcCCEEEecCchhHHHHHHHHH-hh--CCcEEEeCC
Confidence                 2234458999999999887666665555 55  677666554

This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....

>PRK07680 late competence protein ComER; Validated

Probab=95.82  E-value=0.041  Score=50.10  Aligned_cols=31  Identities=16%  Similarity=0.216  Sum_probs=26.1

Q ss_pred             cEEEEcCchhHHHHHHHHHHhCC---CcEEEEcC
Q 020565           33 HILVCGMKGTVAEFCKNIVLAGV---GSLTLMDD   63 (324)
Q Consensus        33 ~VliiG~g~lGsei~k~L~~~Gv---~~i~lvD~   63 (324)
                      +|.|||+|.+|+.++..|...|.   ..++++|.
T Consensus         2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r   35 (273)
T PRK07680          2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNR   35 (273)
T ss_pred             EEEEECccHHHHHHHHHHHHCCCCCcceEEEECC
Confidence            58999999999999999999984   35666654

>PRK10537 voltage-gated potassium channel; Provisional

Probab=95.81  E-value=0.1  Score=50.25  Aligned_cols=93  Identities=15%  Similarity=0.203  Sum_probs=60.2

Q ss_pred             HHHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCe
Q 020565           26 QRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVR  105 (324)
Q Consensus        26 q~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~  105 (324)
                      +...++.||+|+|.|.+|.++++.|...|.. ++++|+|.++.. .       ++     |                 ..
T Consensus       235 ~~~~~k~HvII~G~g~lg~~v~~~L~~~g~~-vvVId~d~~~~~-~-------~~-----g-----------------~~  283 (393)
T PRK10537        235 SHMHRKDHFIICGHSPLAINTYLGLRQRGQA-VTVIVPLGLEHR-L-------PD-----D-----------------AD  283 (393)
T ss_pred             hhcccCCeEEEECCChHHHHHHHHHHHCCCC-EEEEECchhhhh-c-------cC-----C-----------------Cc
Confidence            3344578999999999999999999999974 888887632110 0       00     1                 11


Q ss_pred             EeEeeCCCCC---CchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCc
Q 020565          106 VSVEKGDLSS---LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRV  151 (324)
Q Consensus       106 v~~~~~~~~~---~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~i  151 (324)
                        ....+.++   ....-+++++.||.++++.+....+-..+|+++.++
T Consensus       284 --vI~GD~td~e~L~~AgI~~A~aVI~~t~dD~~Nl~ivL~ar~l~p~~  330 (393)
T PRK10537        284 --LIPGDSSDSAVLKKAGAARARAILALRDNDADNAFVVLAAKEMSSDV  330 (393)
T ss_pred             --EEEeCCCCHHHHHhcCcccCCEEEEcCCChHHHHHHHHHHHHhCCCC
Confidence              12222221   223346788999999988777777777788743333

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=95.80  E-value=0.038  Score=50.90  Aligned_cols=30  Identities=23%  Similarity=0.315  Sum_probs=27.1

Q ss_pred             cEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565           33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        33 ~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      +|+|+|+|++|+.++..|+.+|.. +++++.
T Consensus         2 kI~IiG~G~iG~~~a~~L~~~g~~-V~~~~r   31 (305)
T PRK12921          2 RIAVVGAGAVGGTFGGRLLEAGRD-VTFLVR   31 (305)
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCc-eEEEec
Confidence            699999999999999999999964 888875

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=95.79  E-value=0.016  Score=48.91  Aligned_cols=35  Identities=11%  Similarity=0.207  Sum_probs=30.5

Q ss_pred             HHhcCcEEEEcCchh-HHHHHHHHHHhCCCcEEEEcC
Q 020565           28 RLSKSHILVCGMKGT-VAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        28 ~l~~~~VliiG~g~l-Gsei~k~L~~~Gv~~i~lvD~   63 (324)
                      .|.+++|+|+|.|.+ |..++++|...|+ ++++++.
T Consensus        41 ~l~gk~vlViG~G~~~G~~~a~~L~~~g~-~V~v~~r   76 (168)
T cd01080          41 DLAGKKVVVVGRSNIVGKPLAALLLNRNA-TVTVCHS   76 (168)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHhhCCC-EEEEEEC
Confidence            478999999999985 8889999999998 5888764

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PLN02350 phosphogluconate dehydrogenase (decarboxylating)

Probab=95.72  E-value=0.096  Score=51.81  Aligned_cols=120  Identities=11%  Similarity=0.096  Sum_probs=73.4

Q ss_pred             CcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCcc---HHHHHHHHHHhh-CCCCeEe
Q 020565           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKT---IAEVCCDSLKDF-NPMVRVS  107 (324)
Q Consensus        32 ~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~---ka~~~~~~l~~l-np~v~v~  107 (324)
                      ++|.+||+|-.|+.+|.||+..|.. ++++|.+.-..+.+...    ....   |..   -+....+..+++ .|.+-+.
T Consensus         7 ~~IG~IGLG~MG~~mA~nL~~~G~~-V~V~NRt~~k~~~l~~~----~~~~---Ga~~~~~a~s~~e~v~~l~~~dvIi~   78 (493)
T PLN02350          7 SRIGLAGLAVMGQNLALNIAEKGFP-ISVYNRTTSKVDETVER----AKKE---GNLPLYGFKDPEDFVLSIQKPRSVII   78 (493)
T ss_pred             CCEEEEeeHHHHHHHHHHHHhCCCe-EEEECCCHHHHHHHHHh----hhhc---CCcccccCCCHHHHHhcCCCCCEEEE
Confidence            4799999999999999999999985 88988743222222110    0000   110   112223333332 3554444


Q ss_pred             EeeCCC--CCC---chhhcCCccEEEEcCC-CHHHHHHHHHHHHhccCCccEEEeeecCc
Q 020565          108 VEKGDL--SSL---DGEFYDKFDVVVVSCC-SVTTKKLINEKCRKLSKRVAFYTVDCRDS  161 (324)
Q Consensus       108 ~~~~~~--~~~---~~~~~~~~diVi~~~~-~~~~~~~l~~~~~~~~~~ip~i~~~~~G~  161 (324)
                      .....-  ++.   ....++.-|+||++.. +++....+.+.+.+  +++.|+.+.+.|.
T Consensus        79 ~v~~~~aV~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~--~Gi~fldapVSGG  136 (493)
T PLN02350         79 LVKAGAPVDQTIKALSEYMEPGDCIIDGGNEWYENTERRIKEAAE--KGLLYLGMGVSGG  136 (493)
T ss_pred             ECCCcHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHH--cCCeEEeCCCcCC
Confidence            332211  111   1223456789999876 47777788899999  9999999998874

>PRK12491 pyrroline-5-carboxylate reductase; Reviewed

Probab=95.71  E-value=0.071  Score=48.67  Aligned_cols=80  Identities=11%  Similarity=0.092  Sum_probs=50.2

Q ss_pred             cCcEEEEcCchhHHHHHHHHHHhCC---CcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEe
Q 020565           31 KSHILVCGMKGTVAEFCKNIVLAGV---GSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS  107 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~~~Gv---~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~  107 (324)
                      +.+|.+||+|-+|..+++.|...|.   .++.++|.                      .+.+++.    +.+... +.  
T Consensus         2 ~~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r----------------------~~~~~~~----l~~~~g-~~--   52 (272)
T PRK12491          2 NKQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDL----------------------NVSNLKN----ASDKYG-IT--   52 (272)
T ss_pred             CCeEEEECccHHHHHHHHHHHHCCCCCCceEEEECC----------------------CHHHHHH----HHHhcC-cE--
Confidence            4589999999999999999999985   24555544                      2222222    222111 22  


Q ss_pred             EeeCCCCCCchhhcCCccEEEEcCCCHHHHHHHHHHH
Q 020565          108 VEKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKC  144 (324)
Q Consensus       108 ~~~~~~~~~~~~~~~~~diVi~~~~~~~~~~~l~~~~  144 (324)
                      ..     ....+..+++|+||.|.-+......+.++.
T Consensus        53 ~~-----~~~~e~~~~aDiIiLavkP~~~~~vl~~l~   84 (272)
T PRK12491         53 IT-----TNNNEVANSADILILSIKPDLYSSVINQIK   84 (272)
T ss_pred             Ee-----CCcHHHHhhCCEEEEEeChHHHHHHHHHHH
Confidence            11     122345678899999998766665566554

>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e

Probab=95.71  E-value=0.046  Score=49.14  Aligned_cols=111  Identities=13%  Similarity=0.090  Sum_probs=64.9

Q ss_pred             HHHhcCcEEEEcCchhHHHHHHHHHHh----CC------CcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHH
Q 020565           27 RRLSKSHILVCGMKGTVAEFCKNIVLA----GV------GSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDS   96 (324)
Q Consensus        27 ~~l~~~~VliiG~g~lGsei~k~L~~~----Gv------~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~   96 (324)
                      ++|++.||+++|+|+.|.-+++.|+.+    |+      ++|.++|..-+-..+-        +++       .+.-++.
T Consensus        21 ~~l~d~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~Gll~~~r--------~~l-------~~~~~~~   85 (255)
T PF03949_consen   21 KKLSDQRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSKGLLTDDR--------EDL-------NPHKKPF   85 (255)
T ss_dssp             S-GGG-EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTEEEBTTT--------SSH-------SHHHHHH
T ss_pred             CCHHHcEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEeccceEeccC--------ccC-------Chhhhhh
Confidence            569999999999999999999999999    99      8999999853322211        111       1112233


Q ss_pred             HHhhCCCCeEeEeeCCCCCCchhhcCCc--cEEEEcCC--CHHHHHHHHHHHHhccCCccEEEeeecCce
Q 020565           97 LKDFNPMVRVSVEKGDLSSLDGEFYDKF--DVVVVSCC--SVTTKKLINEKCRKLSKRVAFYTVDCRDSC  162 (324)
Q Consensus        97 l~~lnp~v~v~~~~~~~~~~~~~~~~~~--diVi~~~~--~~~~~~~l~~~~~~~~~~ip~i~~~~~G~~  162 (324)
                      .+..+|.-..        ....+.++..  |++|-++.  ..-+...+...+..  ...|+|..-++...
T Consensus        86 a~~~~~~~~~--------~~L~eav~~~kPtvLIG~S~~~g~ft~evv~~Ma~~--~erPIIF~LSNPt~  145 (255)
T PF03949_consen   86 ARKTNPEKDW--------GSLLEAVKGAKPTVLIGLSGQGGAFTEEVVRAMAKH--NERPIIFPLSNPTP  145 (255)
T ss_dssp             HBSSSTTT----------SSHHHHHHCH--SEEEECSSSTTSS-HHHHHHCHHH--SSSEEEEE-SSSCG
T ss_pred             hccCcccccc--------cCHHHHHHhcCCCEEEEecCCCCcCCHHHHHHHhcc--CCCCEEEECCCCCC
Confidence            3344443211        1234455565  78887763  22244455666655  55688777665443

g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....

>PRK07340 ornithine cyclodeaminase; Validated

Probab=95.69  E-value=0.04  Score=51.17  Aligned_cols=76  Identities=13%  Similarity=0.140  Sum_probs=57.4

Q ss_pred             HhcCcEEEEcCchhHHHHHHHHHH-hCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEe
Q 020565           29 LSKSHILVCGMKGTVAEFCKNIVL-AGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS  107 (324)
Q Consensus        29 l~~~~VliiG~g~lGsei~k~L~~-~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~  107 (324)
                      ....+++|+|+|..|...++.+.. .|+.++.++|.                      ...|++.+++++++.+.  .+.
T Consensus       123 ~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r----------------------~~~~a~~~a~~~~~~~~--~~~  178 (304)
T PRK07340        123 APPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGR----------------------TAASAAAFCAHARALGP--TAE  178 (304)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcC----------------------CHHHHHHHHHHHHhcCC--eeE
Confidence            346889999999999999999975 68888988866                      55688888888875432  222


Q ss_pred             EeeCCCCCCchhhcCCccEEEEcCCCH
Q 020565          108 VEKGDLSSLDGEFYDKFDVVVVSCCSV  134 (324)
Q Consensus       108 ~~~~~~~~~~~~~~~~~diVi~~~~~~  134 (324)
                      .      ...++.+.++|+||.|+-+.
T Consensus       179 ~------~~~~~av~~aDiVitaT~s~  199 (304)
T PRK07340        179 P------LDGEAIPEAVDLVVTATTSR  199 (304)
T ss_pred             E------CCHHHHhhcCCEEEEccCCC
Confidence            1      22355678999999998763

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=95.68  E-value=0.045  Score=39.90  Aligned_cols=54  Identities=17%  Similarity=0.166  Sum_probs=40.2

Q ss_pred             cEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhC
Q 020565           33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFN  101 (324)
Q Consensus        33 ~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~ln  101 (324)
                      ||+|||.|.+|+|+|..|+..|. ++++++...-        ++   ...   +..-.+.+.+.+++.+
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~-~vtli~~~~~--------~~---~~~---~~~~~~~~~~~l~~~g   54 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGK-EVTLIERSDR--------LL---PGF---DPDAAKILEEYLRKRG   54 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTS-EEEEEESSSS--------SS---TTS---SHHHHHHHHHHHHHTT
T ss_pred             CEEEECcCHHHHHHHHHHHHhCc-EEEEEeccch--------hh---hhc---CHHHHHHHHHHHHHCC
Confidence            68999999999999999999996 5899877211        11   122   5555677777888775

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional

Probab=95.67  E-value=0.039  Score=54.26  Aligned_cols=120  Identities=13%  Similarity=0.184  Sum_probs=71.7

Q ss_pred             CcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCc--cHHHHHHHHHHhh-CCCCeEeE
Q 020565           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGK--TIAEVCCDSLKDF-NPMVRVSV  108 (324)
Q Consensus        32 ~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~--~ka~~~~~~l~~l-np~v~v~~  108 (324)
                      ++|.|||+|..|+.+|.||+..|.. ++++|.+.-....+...    ...-   |.  ..+....+.++.+ .|.+-+-.
T Consensus         2 ~~IgvIGLG~MG~~lA~nL~~~G~~-V~v~dr~~~~~~~l~~~----~~~~---g~~i~~~~s~~e~v~~l~~~d~Iil~   73 (470)
T PTZ00142          2 SDIGLIGLAVMGQNLALNIASRGFK-ISVYNRTYEKTEEFVKK----AKEG---NTRVKGYHTLEELVNSLKKPRKVILL   73 (470)
T ss_pred             CEEEEEeEhHHHHHHHHHHHHCCCe-EEEEeCCHHHHHHHHHh----hhhc---CCcceecCCHHHHHhcCCCCCEEEEE
Confidence            5799999999999999999999984 99998754432222110    0000   10  0112223334433 34433332


Q ss_pred             ee-CC-CCCC---chhhcCCccEEEEcCCC-HHHHHHHHHHHHhccCCccEEEeeecCc
Q 020565          109 EK-GD-LSSL---DGEFYDKFDVVVVSCCS-VTTKKLINEKCRKLSKRVAFYTVDCRDS  161 (324)
Q Consensus       109 ~~-~~-~~~~---~~~~~~~~diVi~~~~~-~~~~~~l~~~~~~~~~~ip~i~~~~~G~  161 (324)
                      .. .. +.+.   ....++.-|+||++... +.......+.+.+  +++-|+.+++.|.
T Consensus        74 v~~~~~v~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~--~Gi~fldapVSGG  130 (470)
T PTZ00142         74 IKAGEAVDETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEE--KGILYLGMGVSGG  130 (470)
T ss_pred             eCChHHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHH--cCCeEEcCCCCCC
Confidence            21 11 1111   12345667899998764 5555566678888  8999999988874

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=95.66  E-value=0.049  Score=50.90  Aligned_cols=106  Identities=10%  Similarity=0.053  Sum_probs=58.0

Q ss_pred             cEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEeeCC
Q 020565           33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGD  112 (324)
Q Consensus        33 ~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~~~  112 (324)
                      +|.|+|+|++|+.++..|+.+|.. +++++.+.-..+.++.+-- ....+  .|           ..+.+.+++      
T Consensus         2 kI~IiGaGa~G~ala~~L~~~g~~-V~l~~r~~~~~~~i~~~~~-~~~~~--~~-----------~~~~~~i~~------   60 (326)
T PRK14620          2 KISILGAGSFGTAIAIALSSKKIS-VNLWGRNHTTFESINTKRK-NLKYL--PT-----------CHLPDNISV------   60 (326)
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCe-EEEEecCHHHHHHHHHcCC-CcccC--CC-----------CcCCCCeEE------
Confidence            599999999999999999999954 7888763311111111000 00000  00           001111111      


Q ss_pred             CCCCchhhc-CCccEEEEcCCCHHHHHHHHHHHH-hccCCccEEEeeecCc
Q 020565          113 LSSLDGEFY-DKFDVVVVSCCSVTTKKLINEKCR-KLSKRVAFYTVDCRDS  161 (324)
Q Consensus       113 ~~~~~~~~~-~~~diVi~~~~~~~~~~~l~~~~~-~~~~~ip~i~~~~~G~  161 (324)
                       .....+.+ .++|+||.++-+......+.++.. .+..+.+++. .+.|+
T Consensus        61 -~~~~~~~~~~~~Dliiiavks~~~~~~l~~l~~~~l~~~~~vv~-~~nGi  109 (326)
T PRK14620         61 -KSAIDEVLSDNATCIILAVPTQQLRTICQQLQDCHLKKNTPILI-CSKGI  109 (326)
T ss_pred             -eCCHHHHHhCCCCEEEEEeCHHHHHHHHHHHHHhcCCCCCEEEE-EEcCe
Confidence             11122333 578999999988877776666654 3223444544 55665

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=95.66  E-value=0.069  Score=48.82  Aligned_cols=30  Identities=10%  Similarity=0.058  Sum_probs=27.3

Q ss_pred             cEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565           33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        33 ~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      +|.|||+|.+|..+++.|...|. +++++|.
T Consensus         2 ~I~IIG~G~mG~sla~~L~~~g~-~V~~~d~   31 (279)
T PRK07417          2 KIGIVGLGLIGGSLGLDLRSLGH-TVYGVSR   31 (279)
T ss_pred             eEEEEeecHHHHHHHHHHHHCCC-EEEEEEC
Confidence            69999999999999999999997 4888876

>PRK13243 glyoxylate reductase; Reviewed

Probab=95.65  E-value=0.024  Score=53.26  Aligned_cols=36  Identities=8%  Similarity=0.032  Sum_probs=32.2

Q ss_pred             HHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565           27 RRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        27 ~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      ..|..++|.|||+|.+|..+|+.|...|.. +..+|.
T Consensus       146 ~~L~gktvgIiG~G~IG~~vA~~l~~~G~~-V~~~d~  181 (333)
T PRK13243        146 YDVYGKTIGIIGFGRIGQAVARRAKGFGMR-ILYYSR  181 (333)
T ss_pred             cCCCCCEEEEECcCHHHHHHHHHHHHCCCE-EEEECC
Confidence            358999999999999999999999999974 777776

>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases

Probab=95.62  E-value=0.023  Score=52.12  Aligned_cols=76  Identities=22%  Similarity=0.279  Sum_probs=46.3

Q ss_pred             EEEEcC-chhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCC--CeEe--E
Q 020565           34 ILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPM--VRVS--V  108 (324)
Q Consensus        34 VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~--v~v~--~  108 (324)
                      |||-|. |++|+++++.|+..|..++.++|.                      +.++--.+.+.+++..|+  ++..  .
T Consensus         1 VLVTGa~GSIGseL~rql~~~~p~~lil~d~----------------------~E~~l~~l~~~l~~~~~~~~v~~~~~~   58 (293)
T PF02719_consen    1 VLVTGAGGSIGSELVRQLLRYGPKKLILFDR----------------------DENKLYELERELRSRFPDPKVRFEIVP   58 (293)
T ss_dssp             EEEETTTSHHHHHHHHHHHCCB-SEEEEEES-----------------------HHHHHHHHHHCHHHC--TTCEEEEE-
T ss_pred             CEEEccccHHHHHHHHHHHhcCCCeEEEeCC----------------------ChhHHHHHHHHHhhcccccCcccccCc
Confidence            688885 789999999999999999999998                      455555556666655544  3222  2


Q ss_pred             eeCCCCC--CchhhcC--CccEEEEcC
Q 020565          109 EKGDLSS--LDGEFYD--KFDVVVVSC  131 (324)
Q Consensus       109 ~~~~~~~--~~~~~~~--~~diVi~~~  131 (324)
                      .-.++.+  .....++  +.|+|+-+.
T Consensus        59 vigDvrd~~~l~~~~~~~~pdiVfHaA   85 (293)
T PF02719_consen   59 VIGDVRDKERLNRIFEEYKPDIVFHAA   85 (293)
T ss_dssp             -CTSCCHHHHHHHHTT--T-SEEEE--
T ss_pred             eeecccCHHHHHHHHhhcCCCEEEECh
Confidence            2334433  2244455  778888543

The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.

>PLN03139 formate dehydrogenase; Provisional

Probab=95.62  E-value=0.039  Score=52.82  Aligned_cols=36  Identities=11%  Similarity=0.015  Sum_probs=32.3

Q ss_pred             HHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565           27 RRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        27 ~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      ..|..++|.|||+|.+|..+++.|...|+. +..+|.
T Consensus       195 ~~L~gktVGIVG~G~IG~~vA~~L~afG~~-V~~~d~  230 (386)
T PLN03139        195 YDLEGKTVGTVGAGRIGRLLLQRLKPFNCN-LLYHDR  230 (386)
T ss_pred             cCCCCCEEEEEeecHHHHHHHHHHHHCCCE-EEEECC
Confidence            468999999999999999999999999986 777776

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.61  E-value=0.05  Score=49.94  Aligned_cols=33  Identities=18%  Similarity=0.212  Sum_probs=29.2

Q ss_pred             CcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCc
Q 020565           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV   65 (324)
Q Consensus        32 ~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~   65 (324)
                      ++|.|||+|.+|..+|.+|+.+|.. ++++|.+.
T Consensus         2 ~~V~VIG~G~mG~~iA~~la~~G~~-V~~~d~~~   34 (288)
T PRK09260          2 EKLVVVGAGVMGRGIAYVFAVSGFQ-TTLVDIKQ   34 (288)
T ss_pred             cEEEEECccHHHHHHHHHHHhCCCc-EEEEeCCH
Confidence            4799999999999999999999975 89998743

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=95.57  E-value=0.041  Score=50.05  Aligned_cols=73  Identities=10%  Similarity=0.241  Sum_probs=49.0

Q ss_pred             hcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEe
Q 020565           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVE  109 (324)
Q Consensus        30 ~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~  109 (324)
                      ..++++|+|+|++|..++..|+..|. +++++|.                      ...|++.+++.+.+.. .+.  ..
T Consensus       116 ~~k~vliiGaGg~g~aia~~L~~~g~-~v~v~~R----------------------~~~~~~~la~~~~~~~-~~~--~~  169 (270)
T TIGR00507       116 PNQRVLIIGAGGAARAVALPLLKADC-NVIIANR----------------------TVSKAEELAERFQRYG-EIQ--AF  169 (270)
T ss_pred             cCCEEEEEcCcHHHHHHHHHHHHCCC-EEEEEeC----------------------CHHHHHHHHHHHhhcC-ceE--Ee
Confidence            46789999999999999999999996 7888764                      3335666666654432 111  11


Q ss_pred             eCCCCCCchhhcCCccEEEEcCCC
Q 020565          110 KGDLSSLDGEFYDKFDVVVVSCCS  133 (324)
Q Consensus       110 ~~~~~~~~~~~~~~~diVi~~~~~  133 (324)
                      .  ..   +....++|+||.|+-.
T Consensus       170 ~--~~---~~~~~~~DivInatp~  188 (270)
T TIGR00507       170 S--MD---ELPLHRVDLIINATSA  188 (270)
T ss_pred             c--hh---hhcccCccEEEECCCC
Confidence            1  11   1123578999998854

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=95.53  E-value=0.023  Score=52.52  Aligned_cols=115  Identities=11%  Similarity=0.054  Sum_probs=66.4

Q ss_pred             cEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhh-CCCCeEeEeeC
Q 020565           33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDF-NPMVRVSVEKG  111 (324)
Q Consensus        33 ~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~l-np~v~v~~~~~  111 (324)
                      +|.|||+|..|+.++.+|+..|.. ++++|.+.-..+.+...           |...+....+....+ .+++-+...+.
T Consensus         2 ~Ig~IGlG~mG~~la~~L~~~g~~-V~~~dr~~~~~~~l~~~-----------g~~~~~s~~~~~~~~~~~dvIi~~vp~   69 (298)
T TIGR00872         2 QLGLIGLGRMGANIVRRLAKRGHD-CVGYDHDQDAVKAMKED-----------RTTGVANLRELSQRLSAPRVVWVMVPH   69 (298)
T ss_pred             EEEEEcchHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHc-----------CCcccCCHHHHHhhcCCCCEEEEEcCc
Confidence            699999999999999999999964 78888754332222211           111111111111111 24443333332


Q ss_pred             CC-CCCc---hhhcCCccEEEEcCCC-HHHHHHHHHHHHhccCCccEEEeeecCc
Q 020565          112 DL-SSLD---GEFYDKFDVVVVSCCS-VTTKKLINEKCRKLSKRVAFYTVDCRDS  161 (324)
Q Consensus       112 ~~-~~~~---~~~~~~~diVi~~~~~-~~~~~~l~~~~~~~~~~ip~i~~~~~G~  161 (324)
                      .. .+..   ...++.-++||++... +.....+.+.+.+  .++.|+.+.+.|.
T Consensus        70 ~~~~~v~~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~--~g~~~vda~vsGg  122 (298)
T TIGR00872        70 GIVDAVLEELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKE--KGIHLLDCGTSGG  122 (298)
T ss_pred             hHHHHHHHHHHhhCCCCCEEEECCCCCcccHHHHHHHHHh--cCCeEEecCCCCC
Confidence            21 1111   1224445788888654 4555566677777  8899999888763

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=95.53  E-value=0.093  Score=52.89  Aligned_cols=33  Identities=18%  Similarity=0.356  Sum_probs=30.1

Q ss_pred             cCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d   64 (324)
                      +.||+|+|+|.+|..+++.|...|+. ++++|.|
T Consensus       417 ~~hiiI~G~G~~G~~la~~L~~~g~~-vvvId~d  449 (558)
T PRK10669        417 CNHALLVGYGRVGSLLGEKLLAAGIP-LVVIETS  449 (558)
T ss_pred             CCCEEEECCChHHHHHHHHHHHCCCC-EEEEECC
Confidence            57999999999999999999999986 8999883

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=95.51  E-value=0.016  Score=49.48  Aligned_cols=33  Identities=21%  Similarity=0.163  Sum_probs=27.7

Q ss_pred             cEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCcc
Q 020565           33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVV   66 (324)
Q Consensus        33 ~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v   66 (324)
                      +|.|+|+|.+|..+|-.++++|.. ++++|.+.-
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~G~~-V~l~d~~~~   33 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARAGYE-VTLYDRSPE   33 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHTTSE-EEEE-SSHH
T ss_pred             CEEEEcCCHHHHHHHHHHHhCCCc-EEEEECChH
Confidence            689999999999999999999976 999998443

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>PRK08410 2-hydroxyacid dehydrogenase; Provisional

Probab=95.47  E-value=0.029  Score=52.23  Aligned_cols=36  Identities=8%  Similarity=0.039  Sum_probs=32.0

Q ss_pred             HHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565           27 RRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        27 ~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      ..|..++|.|||+|.+|.++|+.+...|.. +..+|.
T Consensus       141 ~~L~gktvGIiG~G~IG~~vA~~~~~fgm~-V~~~d~  176 (311)
T PRK08410        141 GEIKGKKWGIIGLGTIGKRVAKIAQAFGAK-VVYYST  176 (311)
T ss_pred             cccCCCEEEEECCCHHHHHHHHHHhhcCCE-EEEECC
Confidence            469999999999999999999999988875 777776

>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1

Probab=95.44  E-value=0.11  Score=47.35  Aligned_cols=109  Identities=14%  Similarity=0.093  Sum_probs=69.0

Q ss_pred             HHHhcCcEEEEcCchhHHHHHHHHHHh----CC------CcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHH
Q 020565           27 RRLSKSHILVCGMKGTVAEFCKNIVLA----GV------GSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDS   96 (324)
Q Consensus        27 ~~l~~~~VliiG~g~lGsei~k~L~~~----Gv------~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~   96 (324)
                      ++|++.||+++|+|+.|.-+++.|..+    |+      ++|.++|.+-+=..+  |      .|+   ...|.+    .
T Consensus        21 ~~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~--r------~~l---~~~~~~----~   85 (279)
T cd05312          21 KPLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKD--R------KDL---TPFKKP----F   85 (279)
T ss_pred             CChhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCC--C------Ccc---hHHHHH----H
Confidence            678999999999999999999999998    99      689999985433222  1      112   222322    2


Q ss_pred             HHhhCCCCeEeEeeCCCCCCchhhcC--CccEEEEcCC--CHHHHHHHHHHHHhccCCccEEEeeecCc
Q 020565           97 LKDFNPMVRVSVEKGDLSSLDGEFYD--KFDVVVVSCC--SVTTKKLINEKCRKLSKRVAFYTVDCRDS  161 (324)
Q Consensus        97 l~~lnp~v~v~~~~~~~~~~~~~~~~--~~diVi~~~~--~~~~~~~l~~~~~~~~~~ip~i~~~~~G~  161 (324)
                      .+..++        .. .....+.++  +.|++|-++.  ..-+...|...+..  ...|+|.+-++..
T Consensus        86 a~~~~~--------~~-~~~L~e~i~~v~ptvlIG~S~~~g~ft~evv~~Ma~~--~~~PIIFaLSNPt  143 (279)
T cd05312          86 ARKDEE--------KE-GKSLLEVVKAVKPTVLIGLSGVGGAFTEEVVRAMAKS--NERPIIFALSNPT  143 (279)
T ss_pred             HhhcCc--------cc-CCCHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhc--CCCCEEEECCCcC
Confidence            222332        00 112345566  7788887764  33345566666655  5568887766543

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=95.42  E-value=0.06  Score=50.37  Aligned_cols=32  Identities=19%  Similarity=0.146  Sum_probs=28.2

Q ss_pred             CcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (324)
Q Consensus        32 ~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d   64 (324)
                      .+|.|||+|.+|+.++.+|+..|.. ++++|.+
T Consensus         5 m~I~iIG~G~mG~~ia~~L~~~G~~-V~~~~r~   36 (328)
T PRK14618          5 MRVAVLGAGAWGTALAVLAASKGVP-VRLWARR   36 (328)
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCe-EEEEeCC
Confidence            3799999999999999999999965 8888773

>PLN02688 pyrroline-5-carboxylate reductase

Probab=95.40  E-value=0.11  Score=46.96  Aligned_cols=29  Identities=14%  Similarity=0.286  Sum_probs=24.4

Q ss_pred             cEEEEcCchhHHHHHHHHHHhCC---CcEEEE
Q 020565           33 HILVCGMKGTVAEFCKNIVLAGV---GSLTLM   61 (324)
Q Consensus        33 ~VliiG~g~lGsei~k~L~~~Gv---~~i~lv   61 (324)
                      +|.+||+|.+|+.++++|..+|.   ..++++
T Consensus         2 kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~   33 (266)
T PLN02688          2 RVGFIGAGKMAEAIARGLVASGVVPPSRISTA   33 (266)
T ss_pred             eEEEECCcHHHHHHHHHHHHCCCCCcceEEEE
Confidence            69999999999999999999985   245554

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=95.39  E-value=0.065  Score=51.94  Aligned_cols=37  Identities=8%  Similarity=0.108  Sum_probs=32.5

Q ss_pred             HHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCc
Q 020565           28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV   65 (324)
Q Consensus        28 ~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~   65 (324)
                      .+..++|+|+|+|.+|..+++.|...|. +++++|.+.
T Consensus       209 ~l~Gk~VlViG~G~IG~~vA~~lr~~Ga-~ViV~d~dp  245 (425)
T PRK05476        209 LIAGKVVVVAGYGDVGKGCAQRLRGLGA-RVIVTEVDP  245 (425)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCc
Confidence            3578899999999999999999999999 588887643

>PRK07634 pyrroline-5-carboxylate reductase; Reviewed

Probab=95.37  E-value=0.12  Score=45.94  Aligned_cols=82  Identities=11%  Similarity=0.108  Sum_probs=49.4

Q ss_pred             hcCcEEEEcCchhHHHHHHHHHHhCCC---cEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeE
Q 020565           30 SKSHILVCGMKGTVAEFCKNIVLAGVG---SLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRV  106 (324)
Q Consensus        30 ~~~~VliiG~g~lGsei~k~L~~~Gv~---~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v  106 (324)
                      +..+|.|||+|.+|..+++.|...|..   .+.+++.                .     ...|++.+++.    .+ +. 
T Consensus         3 ~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~----------------~-----~~~~~~~~~~~----~~-~~-   55 (245)
T PRK07634          3 KKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNR----------------S-----NVEKLDQLQAR----YN-VS-   55 (245)
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECC----------------C-----CHHHHHHHHHH----cC-cE-
Confidence            457899999999999999999988732   2333322                0     11233322221    11 22 


Q ss_pred             eEeeCCCCCCchhhcCCccEEEEcCCCHHHHHHHHHHH
Q 020565          107 SVEKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKC  144 (324)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~diVi~~~~~~~~~~~l~~~~  144 (324)
                       ..     ....+.++++|+||.|+-+...+..+.++.
T Consensus        56 -~~-----~~~~~~~~~~DiViiavp~~~~~~v~~~l~   87 (245)
T PRK07634         56 -TT-----TDWKQHVTSVDTIVLAMPPSAHEELLAELS   87 (245)
T ss_pred             -Ee-----CChHHHHhcCCEEEEecCHHHHHHHHHHHH
Confidence             11     122455678999999988766655555544

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=95.36  E-value=0.16  Score=44.61  Aligned_cols=85  Identities=15%  Similarity=0.078  Sum_probs=51.1

Q ss_pred             cEEEEc-CchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCC--CeEeEe
Q 020565           33 HILVCG-MKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPM--VRVSVE  109 (324)
Q Consensus        33 ~VliiG-~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~--v~v~~~  109 (324)
                      +|.||| +|.+|+.+++.|+..| .++++++.                      ...+++.+.+........  +.....
T Consensus         2 kI~IIGG~G~mG~ala~~L~~~G-~~V~v~~r----------------------~~~~~~~l~~~~~~~~~~~g~~~~~~   58 (219)
T TIGR01915         2 KIAVLGGTGDQGKGLALRLAKAG-NKIIIGSR----------------------DLEKAEEAAAKALEELGHGGSDIKVT   58 (219)
T ss_pred             EEEEEcCCCHHHHHHHHHHHhCC-CEEEEEEc----------------------CHHHHHHHHHHHHhhccccCCCceEE
Confidence            699997 8999999999999999 45777654                      222333333322211110  111111


Q ss_pred             eCCCCCCchhhcCCccEEEEcCCCHHHHHHHHHHH
Q 020565          110 KGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKC  144 (324)
Q Consensus       110 ~~~~~~~~~~~~~~~diVi~~~~~~~~~~~l~~~~  144 (324)
                      ..    ...+..+++|+||.|.-.......+.++.
T Consensus        59 ~~----~~~ea~~~aDvVilavp~~~~~~~l~~l~   89 (219)
T TIGR01915        59 GA----DNAEAAKRADVVILAVPWDHVLKTLESLR   89 (219)
T ss_pred             Ee----ChHHHHhcCCEEEEECCHHHHHHHHHHHH
Confidence            00    12345678999999998776665555543

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=95.33  E-value=0.075  Score=42.70  Aligned_cols=81  Identities=10%  Similarity=0.100  Sum_probs=44.5

Q ss_pred             hcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEe
Q 020565           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVE  109 (324)
Q Consensus        30 ~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~  109 (324)
                      .+-+|.|||+|-+|..+++.|..+|.. +.-+-                       .++  ...++++...-+...+.. 
T Consensus         9 ~~l~I~iIGaGrVG~~La~aL~~ag~~-v~~v~-----------------------srs--~~sa~~a~~~~~~~~~~~-   61 (127)
T PF10727_consen    9 ARLKIGIIGAGRVGTALARALARAGHE-VVGVY-----------------------SRS--PASAERAAAFIGAGAILD-   61 (127)
T ss_dssp             ---EEEEECTSCCCCHHHHHHHHTTSE-EEEES-----------------------SCH--H-HHHHHHC--TT------
T ss_pred             CccEEEEECCCHHHHHHHHHHHHCCCe-EEEEE-----------------------eCC--cccccccccccccccccc-
Confidence            456899999999999999999999964 43321                       111  223444444444432211 


Q ss_pred             eCCCCCCchhhcCCccEEEEcCCCHHHHHHHHHHH
Q 020565          110 KGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKC  144 (324)
Q Consensus       110 ~~~~~~~~~~~~~~~diVi~~~~~~~~~~~l~~~~  144 (324)
                             ..+.++.+|+||.++-+........+++
T Consensus        62 -------~~~~~~~aDlv~iavpDdaI~~va~~La   89 (127)
T PF10727_consen   62 -------LEEILRDADLVFIAVPDDAIAEVAEQLA   89 (127)
T ss_dssp             -------TTGGGCC-SEEEE-S-CCHHHHHHHHHH
T ss_pred             -------cccccccCCEEEEEechHHHHHHHHHHH
Confidence                   2456789999999886555444444444

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>PRK00048 dihydrodipicolinate reductase; Provisional

Probab=95.33  E-value=0.17  Score=45.81  Aligned_cols=87  Identities=10%  Similarity=-0.020  Sum_probs=53.3

Q ss_pred             CcEEEEcC-chhHHHHHHHHHHh-CCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEe
Q 020565           32 SHILVCGM-KGTVAEFCKNIVLA-GVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVE  109 (324)
Q Consensus        32 ~~VliiG~-g~lGsei~k~L~~~-Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~  109 (324)
                      -+|.|+|+ |.+|..+++.+... ++.-..++|.+.-..                 ...             ....+.  
T Consensus         2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~-----------------~~~-------------~~~~i~--   49 (257)
T PRK00048          2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPL-----------------VGQ-------------GALGVA--   49 (257)
T ss_pred             cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccc-----------------ccc-------------CCCCcc--
Confidence            37999999 99999999988764 454444455532110                 000             001111  


Q ss_pred             eCCCCCCchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEe
Q 020565          110 KGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTV  156 (324)
Q Consensus       110 ~~~~~~~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~  156 (324)
                         .....++.++++|+||+++ ++.....+-..|.+  .++|++.+
T Consensus        50 ---~~~dl~~ll~~~DvVid~t-~p~~~~~~~~~al~--~G~~vvig   90 (257)
T PRK00048         50 ---ITDDLEAVLADADVLIDFT-TPEATLENLEFALE--HGKPLVIG   90 (257)
T ss_pred             ---ccCCHHHhccCCCEEEECC-CHHHHHHHHHHHHH--cCCCEEEE
Confidence               1122344456789999888 44445677788888  89998844

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=95.31  E-value=0.058  Score=50.17  Aligned_cols=31  Identities=16%  Similarity=0.272  Sum_probs=28.8

Q ss_pred             cEEEEcCchhHHHHHHHHHHhCC-CcEEEEcC
Q 020565           33 HILVCGMKGTVAEFCKNIVLAGV-GSLTLMDD   63 (324)
Q Consensus        33 ~VliiG~g~lGsei~k~L~~~Gv-~~i~lvD~   63 (324)
                      +|.|||+|.+|+.++..|+..|+ .++.++|.
T Consensus         2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~   33 (308)
T cd05292           2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDI   33 (308)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCCEEEEEEC
Confidence            69999999999999999999996 67999986

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=95.31  E-value=0.081  Score=49.89  Aligned_cols=107  Identities=14%  Similarity=0.050  Sum_probs=59.8

Q ss_pred             CcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEeeC
Q 020565           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKG  111 (324)
Q Consensus        32 ~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~~  111 (324)
                      .+|.|+|+|.+|+.++..|+..|  +++++..+.-....++..-. +....   +.         -..+.+.+  ..   
T Consensus         8 mkI~IiGaGa~G~alA~~La~~g--~v~l~~~~~~~~~~i~~~~~-~~~~l---~~---------~~~l~~~i--~~---   67 (341)
T PRK12439          8 PKVVVLGGGSWGTTVASICARRG--PTLQWVRSAETADDINDNHR-NSRYL---GN---------DVVLSDTL--RA---   67 (341)
T ss_pred             CeEEEECCCHHHHHHHHHHHHCC--CEEEEeCCHHHHHHHHhcCC-CcccC---CC---------CcccCCCe--EE---
Confidence            57999999999999999999998  46665443222222221100 00000   10         00011111  11   


Q ss_pred             CCCCCchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEeeecCc
Q 020565          112 DLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDS  161 (324)
Q Consensus       112 ~~~~~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~~~~G~  161 (324)
                        .....+.++++|+||.+.-+...+..+.++...+..+.++|... .|+
T Consensus        68 --t~d~~~a~~~aDlVilavps~~~~~vl~~i~~~l~~~~~vIsl~-kGi  114 (341)
T PRK12439         68 --TTDFAEAANCADVVVMGVPSHGFRGVLTELAKELRPWVPVVSLV-KGL  114 (341)
T ss_pred             --ECCHHHHHhcCCEEEEEeCHHHHHHHHHHHHhhcCCCCEEEEEE-eCC
Confidence              11223456789999999998877777776664433455566443 354

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=95.27  E-value=0.085  Score=48.96  Aligned_cols=32  Identities=16%  Similarity=0.131  Sum_probs=29.0

Q ss_pred             cEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCc
Q 020565           33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV   65 (324)
Q Consensus        33 ~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~   65 (324)
                      +|.|||+|.+|+.++.+|+..|. +++++|.+.
T Consensus         4 ~V~VIG~G~mG~~iA~~la~~G~-~V~v~d~~~   35 (308)
T PRK06129          4 SVAIIGAGLIGRAWAIVFARAGH-EVRLWDADP   35 (308)
T ss_pred             EEEEECccHHHHHHHHHHHHCCC-eeEEEeCCH
Confidence            69999999999999999999998 499998753

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=95.26  E-value=0.14  Score=49.85  Aligned_cols=84  Identities=17%  Similarity=0.153  Sum_probs=54.9

Q ss_pred             cEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEeeCC
Q 020565           33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGD  112 (324)
Q Consensus        33 ~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~~~  112 (324)
                      +|+|+|+|.+|..+++.|...|.. ++++|.+                      ..+.+.+    ++ ..  .+.....+
T Consensus         2 ~viIiG~G~ig~~~a~~L~~~g~~-v~vid~~----------------------~~~~~~~----~~-~~--~~~~~~gd   51 (453)
T PRK09496          2 KIIIVGAGQVGYTLAENLSGENND-VTVIDTD----------------------EERLRRL----QD-RL--DVRTVVGN   51 (453)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCc-EEEEECC----------------------HHHHHHH----Hh-hc--CEEEEEeC
Confidence            799999999999999999999975 7888762                      1122221    11 01  12233233


Q ss_pred             CCC---CchhhcCCccEEEEcCCCHHHHHHHHHHHHh
Q 020565          113 LSS---LDGEFYDKFDVVVVSCCSVTTKKLINEKCRK  146 (324)
Q Consensus       113 ~~~---~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~  146 (324)
                      ..+   .....++++|.||.++.+......+-..+++
T Consensus        52 ~~~~~~l~~~~~~~a~~vi~~~~~~~~n~~~~~~~r~   88 (453)
T PRK09496         52 GSSPDVLREAGAEDADLLIAVTDSDETNMVACQIAKS   88 (453)
T ss_pred             CCCHHHHHHcCCCcCCEEEEecCChHHHHHHHHHHHH
Confidence            222   1122367899999998887777777777777

>PRK07679 pyrroline-5-carboxylate reductase; Reviewed

Probab=95.24  E-value=0.14  Score=46.81  Aligned_cols=25  Identities=16%  Similarity=0.170  Sum_probs=22.7

Q ss_pred             cCcEEEEcCchhHHHHHHHHHHhCC
Q 020565           31 KSHILVCGMKGTVAEFCKNIVLAGV   55 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~~~Gv   55 (324)
                      ..+|.+||+|.+|..+++.|...|+
T Consensus         3 ~mkI~~IG~G~mG~aia~~l~~~g~   27 (279)
T PRK07679          3 IQNISFLGAGSIAEAIIGGLLHANV   27 (279)
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCC
Confidence            4579999999999999999999983

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.21  E-value=0.32  Score=44.71  Aligned_cols=33  Identities=21%  Similarity=0.135  Sum_probs=29.4

Q ss_pred             cCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d   64 (324)
                      .++|.|||+|..|+.++.+|+.+|.. ++++|.+
T Consensus         4 ~~kI~vIGaG~mG~~iA~~la~~G~~-V~l~d~~   36 (292)
T PRK07530          4 IKKVGVIGAGQMGNGIAHVCALAGYD-VLLNDVS   36 (292)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCe-EEEEeCC
Confidence            46799999999999999999999974 8888863

>PRK06197 short chain dehydrogenase; Provisional

Probab=95.19  E-value=0.053  Score=49.94  Aligned_cols=37  Identities=19%  Similarity=0.125  Sum_probs=30.8

Q ss_pred             HHHHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           26 QRRLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        26 q~~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      ...+++++|+|.|+ ||+|.++++.|+..|.. +++++.
T Consensus        11 ~~~~~~k~vlItGas~gIG~~~a~~l~~~G~~-vi~~~r   48 (306)
T PRK06197         11 IPDQSGRVAVVTGANTGLGYETAAALAAKGAH-VVLAVR   48 (306)
T ss_pred             cccCCCCEEEEcCCCCcHHHHHHHHHHHCCCE-EEEEeC
Confidence            34578889999996 89999999999999974 767654

>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating

Probab=95.18  E-value=0.042  Score=54.03  Aligned_cols=120  Identities=11%  Similarity=0.094  Sum_probs=70.3

Q ss_pred             cEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhh-CCCCeEeEeeC
Q 020565           33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDF-NPMVRVSVEKG  111 (324)
Q Consensus        33 ~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~l-np~v~v~~~~~  111 (324)
                      .|.|||+|..|..+|.||+..|.. ++++|.+.-....+.....  ...    +-.-+....+..+.+ .|.+-+...+.
T Consensus         1 ~IG~IGLG~MG~~mA~nL~~~G~~-V~v~drt~~~~~~l~~~~~--~g~----~~~~~~s~~e~v~~l~~~dvIil~v~~   73 (467)
T TIGR00873         1 DIGVIGLAVMGSNLALNMADHGFT-VSVYNRTPEKTDEFLAEHA--KGK----KIVGAYSIEEFVQSLERPRKIMLMVKA   73 (467)
T ss_pred             CEEEEeeHHHHHHHHHHHHhcCCe-EEEEeCCHHHHHHHHhhcc--CCC----CceecCCHHHHHhhcCCCCEEEEECCC
Confidence            478999999999999999999984 8888875543333321100  000    001111122333333 34543433322


Q ss_pred             -C-CCCC---chhhcCCccEEEEcCC-CHHHHHHHHHHHHhccCCccEEEeeecCc
Q 020565          112 -D-LSSL---DGEFYDKFDVVVVSCC-SVTTKKLINEKCRKLSKRVAFYTVDCRDS  161 (324)
Q Consensus       112 -~-~~~~---~~~~~~~~diVi~~~~-~~~~~~~l~~~~~~~~~~ip~i~~~~~G~  161 (324)
                       . +.+.   ....++.-|+||++.. .+.......+.+.+  +++-|+.+.+.|.
T Consensus        74 ~~~v~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~--~gi~fvdapVsGG  127 (467)
T TIGR00873        74 GAPVDAVINQLLPLLEKGDIIIDGGNSHYPDTERRYKELKA--KGILFVGSGVSGG  127 (467)
T ss_pred             cHHHHHHHHHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHh--cCCEEEcCCCCCC
Confidence             1 1111   1233456689999875 45555555667878  8999999998874

This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=95.18  E-value=0.11  Score=45.15  Aligned_cols=36  Identities=17%  Similarity=0.258  Sum_probs=31.9

Q ss_pred             HHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565           28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (324)
Q Consensus        28 ~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d   64 (324)
                      .|+.++|+|+|+|.+|..+++.|...|. ++++.|.+
T Consensus        25 ~l~gk~v~I~G~G~vG~~~A~~L~~~G~-~Vvv~D~~   60 (200)
T cd01075          25 SLEGKTVAVQGLGKVGYKLAEHLLEEGA-KLIVADIN   60 (200)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCC
Confidence            4788999999999999999999999997 47788764

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PRK05854 short chain dehydrogenase; Provisional

Probab=95.17  E-value=0.069  Score=49.56  Aligned_cols=64  Identities=22%  Similarity=0.312  Sum_probs=42.9

Q ss_pred             HHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeE
Q 020565           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRV  106 (324)
Q Consensus        28 ~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v  106 (324)
                      .|+.++++|.|+ +|+|.++++.|+..|. ++.+++.                      ...|.+.+.+.+.+.+|..++
T Consensus        11 ~l~gk~~lITGas~GIG~~~a~~La~~G~-~Vil~~R----------------------~~~~~~~~~~~l~~~~~~~~v   67 (313)
T PRK05854         11 DLSGKRAVVTGASDGLGLGLARRLAAAGA-EVILPVR----------------------NRAKGEAAVAAIRTAVPDAKL   67 (313)
T ss_pred             ccCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeC----------------------CHHHHHHHHHHHHHhCCCCce
Confidence            367789999996 6899999999999996 4777654                      223444455555555555555


Q ss_pred             eEeeCCCC
Q 020565          107 SVEKGDLS  114 (324)
Q Consensus       107 ~~~~~~~~  114 (324)
                      ....-++.
T Consensus        68 ~~~~~Dl~   75 (313)
T PRK05854         68 SLRALDLS   75 (313)
T ss_pred             EEEEecCC
Confidence            54444443

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=95.17  E-value=0.17  Score=46.55  Aligned_cols=32  Identities=19%  Similarity=0.233  Sum_probs=28.8

Q ss_pred             CcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (324)
Q Consensus        32 ~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d   64 (324)
                      ++|.|||+|-+|+.+|.+|+.+|. .++++|.+
T Consensus         5 ~~V~vIG~G~mG~~iA~~l~~~G~-~V~~~d~~   36 (295)
T PLN02545          5 KKVGVVGAGQMGSGIAQLAAAAGM-DVWLLDSD   36 (295)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCC
Confidence            579999999999999999999996 58888873

>PRK07063 short chain dehydrogenase; Provisional

Probab=95.14  E-value=0.094  Score=46.87  Aligned_cols=81  Identities=22%  Similarity=0.285  Sum_probs=51.6

Q ss_pred             HHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeE
Q 020565           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRV  106 (324)
Q Consensus        28 ~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v  106 (324)
                      +|++++|+|.|+ |++|.++++.|+..|.. +.++|.                      ...+.+.+.+.+++.++..++
T Consensus         4 ~l~~k~vlVtGas~gIG~~~a~~l~~~G~~-vv~~~r----------------------~~~~~~~~~~~~~~~~~~~~~   60 (260)
T PRK07063          4 RLAGKVALVTGAAQGIGAAIARAFAREGAA-VALADL----------------------DAALAERAAAAIARDVAGARV   60 (260)
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEeC----------------------CHHHHHHHHHHHHhccCCceE
Confidence            367889999996 78999999999999975 777664                      223444555555554444455


Q ss_pred             eEeeCCCCCC--chh-------hcCCccEEEEcC
Q 020565          107 SVEKGDLSSL--DGE-------FYDKFDVVVVSC  131 (324)
Q Consensus       107 ~~~~~~~~~~--~~~-------~~~~~diVi~~~  131 (324)
                      ..+..++.+.  ...       .+...|++|.+.
T Consensus        61 ~~~~~Dl~~~~~~~~~~~~~~~~~g~id~li~~a   94 (260)
T PRK07063         61 LAVPADVTDAASVAAAVAAAEEAFGPLDVLVNNA   94 (260)
T ss_pred             EEEEccCCCHHHHHHHHHHHHHHhCCCcEEEECC
Confidence            5555555431  111       123567777654

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=95.14  E-value=0.032  Score=41.41  Aligned_cols=36  Identities=19%  Similarity=0.197  Sum_probs=33.6

Q ss_pred             HHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565           28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        28 ~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      .+..++++|+|+|.+|..++..|...|..+++++|.
T Consensus        20 ~~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r   55 (86)
T cd05191          20 SLKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR   55 (86)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence            478899999999999999999999998888999988

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>PRK14982 acyl-ACP reductase; Provisional

Probab=95.12  E-value=0.12  Score=48.66  Aligned_cols=36  Identities=28%  Similarity=0.424  Sum_probs=32.0

Q ss_pred             HHhcCcEEEEcC-chhHHHHHHHHHH-hCCCcEEEEcC
Q 020565           28 RLSKSHILVCGM-KGTVAEFCKNIVL-AGVGSLTLMDD   63 (324)
Q Consensus        28 ~l~~~~VliiG~-g~lGsei~k~L~~-~Gv~~i~lvD~   63 (324)
                      .|++++|+|+|+ |.+|+++++.|+. .|+.++++++.
T Consensus       152 ~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R  189 (340)
T PRK14982        152 DLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVAR  189 (340)
T ss_pred             CcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcC
Confidence            588899999998 7999999999985 58999999865

>PRK08291 ectoine utilization protein EutC; Validated

Probab=95.10  E-value=0.1  Score=49.04  Aligned_cols=76  Identities=17%  Similarity=0.100  Sum_probs=55.3

Q ss_pred             cCcEEEEcCchhHHHHHHHHHH-hCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEe
Q 020565           31 KSHILVCGMKGTVAEFCKNIVL-AGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVE  109 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~~-~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~  109 (324)
                      .++++|+|+|+.|...+..|.. .|+.++++++.                      ...|++.+++.+++..+ +.+...
T Consensus       132 ~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R----------------------~~~~a~~l~~~~~~~~g-~~v~~~  188 (330)
T PRK08291        132 ASRAAVIGAGEQARLQLEALTLVRPIREVRVWAR----------------------DAAKAEAYAADLRAELG-IPVTVA  188 (330)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcC----------------------CHHHHHHHHHHHhhccC-ceEEEe
Confidence            3689999999999999999985 57889999865                      55577888877765332 333222


Q ss_pred             eCCCCCCchhhcCCccEEEEcCCCH
Q 020565          110 KGDLSSLDGEFYDKFDVVVVSCCSV  134 (324)
Q Consensus       110 ~~~~~~~~~~~~~~~diVi~~~~~~  134 (324)
                           +...+.+.++|+||.|+.+.
T Consensus       189 -----~d~~~al~~aDiVi~aT~s~  208 (330)
T PRK08291        189 -----RDVHEAVAGADIIVTTTPSE  208 (330)
T ss_pred             -----CCHHHHHccCCEEEEeeCCC
Confidence                 12355677899999998653

>PRK06932 glycerate dehydrogenase; Provisional

Probab=95.10  E-value=0.053  Score=50.59  Aligned_cols=89  Identities=16%  Similarity=0.157  Sum_probs=58.0

Q ss_pred             HHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeE
Q 020565           27 RRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRV  106 (324)
Q Consensus        27 ~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v  106 (324)
                      ..|+.++|.|+|+|.+|.++++.|...|.. +..+|...             ..+.   ..                   
T Consensus       143 ~~l~gktvgIiG~G~IG~~va~~l~~fg~~-V~~~~~~~-------------~~~~---~~-------------------  186 (314)
T PRK06932        143 TDVRGSTLGVFGKGCLGTEVGRLAQALGMK-VLYAEHKG-------------ASVC---RE-------------------  186 (314)
T ss_pred             cccCCCEEEEECCCHHHHHHHHHHhcCCCE-EEEECCCc-------------cccc---cc-------------------
Confidence            468999999999999999999999988885 66655310             0001   00                   


Q ss_pred             eEeeCCCCCCchhhcCCccEEEEcC-CCHHHHHHHHHHHH-hccCCccEEEee
Q 020565          107 SVEKGDLSSLDGEFYDKFDVVVVSC-CSVTTKKLINEKCR-KLSKRVAFYTVD  157 (324)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~diVi~~~-~~~~~~~~l~~~~~-~~~~~ip~i~~~  157 (324)
                           .. ...++.++.+|+|+.+. .+.+++..+|+..- +++.+.-+|+++
T Consensus       187 -----~~-~~l~ell~~sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~a  233 (314)
T PRK06932        187 -----GY-TPFEEVLKQADIVTLHCPLTETTQNLINAETLALMKPTAFLINTG  233 (314)
T ss_pred             -----cc-CCHHHHHHhCCEEEEcCCCChHHhcccCHHHHHhCCCCeEEEECC
Confidence                 00 12366778888887765 46777777776432 223455566655

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=95.07  E-value=0.096  Score=48.15  Aligned_cols=33  Identities=18%  Similarity=0.120  Sum_probs=29.6

Q ss_pred             CcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCc
Q 020565           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV   65 (324)
Q Consensus        32 ~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~   65 (324)
                      .+|.|||+|.+|+.++..|+..|. .++++|.+.
T Consensus         4 ~~I~ViGaG~mG~~iA~~la~~G~-~V~l~d~~~   36 (291)
T PRK06035          4 KVIGVVGSGVMGQGIAQVFARTGY-DVTIVDVSE   36 (291)
T ss_pred             cEEEEECccHHHHHHHHHHHhcCC-eEEEEeCCH
Confidence            579999999999999999999998 599998743

>PRK05225 ketol-acid reductoisomerase; Validated

Probab=95.06  E-value=0.049  Score=52.80  Aligned_cols=51  Identities=16%  Similarity=0.113  Sum_probs=39.7

Q ss_pred             CCHHHHHHhHHHHHhhhHHHH----HHHhcCcEEEEcCchhHHHHHHHHHHhCCC
Q 020565            6 LTEQETALYDRQIRVWGADAQ----RRLSKSHILVCGMKGTVAEFCKNIVLAGVG   56 (324)
Q Consensus         6 l~~~e~~ry~Rqi~l~g~~~q----~~l~~~~VliiG~g~lGsei~k~L~~~Gv~   56 (324)
                      |+--+.-.--+|-|+|+.+.-    ..|++++|+|||+|+.|..-|-||--+|+.
T Consensus         7 ~~~~~~~~~~~~~r~~~r~ef~~~~~~LkgKtIaIIGyGSqG~AqAlNLrdSGvn   61 (487)
T PRK05225          7 LNLRQQLAQLGKCRFMDRDEFADGASYLKGKKIVIVGCGAQGLNQGLNMRDSGLD   61 (487)
T ss_pred             ccHHHHHHHhccceecchhhccchhHHhCCCEEEEEccCHHHHHHhCCCccccce
Confidence            343333333455677887554    789999999999999999999999999996

>PRK06223 malate dehydrogenase; Reviewed

Probab=95.05  E-value=0.08  Score=49.04  Aligned_cols=32  Identities=22%  Similarity=0.333  Sum_probs=29.5

Q ss_pred             CcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        32 ~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      .||.|||+|.+|+.++..++..|.+++.++|.
T Consensus         3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~   34 (307)
T PRK06223          3 KKISIIGAGNVGATLAHLLALKELGDVVLFDI   34 (307)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEEEC
Confidence            48999999999999999999998768999987

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=95.05  E-value=0.022  Score=48.45  Aligned_cols=40  Identities=13%  Similarity=0.132  Sum_probs=33.5

Q ss_pred             HHHHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCc
Q 020565           25 AQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV   65 (324)
Q Consensus        25 ~q~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~   65 (324)
                      ....|..++|.|+|+|.+|.++++.|...|. ++..+|...
T Consensus        30 ~~~~l~g~tvgIiG~G~IG~~vA~~l~~fG~-~V~~~d~~~   69 (178)
T PF02826_consen   30 PGRELRGKTVGIIGYGRIGRAVARRLKAFGM-RVIGYDRSP   69 (178)
T ss_dssp             TBS-STTSEEEEESTSHHHHHHHHHHHHTT--EEEEEESSC
T ss_pred             CccccCCCEEEEEEEcCCcCeEeeeeecCCc-eeEEecccC
Confidence            3468999999999999999999999999999 588888743

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.02  E-value=0.21  Score=45.65  Aligned_cols=32  Identities=19%  Similarity=0.193  Sum_probs=28.9

Q ss_pred             CcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (324)
Q Consensus        32 ~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d   64 (324)
                      .+|.|||+|-+|+.++..|+..|. .++++|.+
T Consensus         4 ~kI~VIG~G~mG~~ia~~la~~g~-~V~~~d~~   35 (282)
T PRK05808          4 QKIGVIGAGTMGNGIAQVCAVAGY-DVVMVDIS   35 (282)
T ss_pred             cEEEEEccCHHHHHHHHHHHHCCC-ceEEEeCC
Confidence            479999999999999999999998 58898864

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.99  E-value=0.089  Score=51.88  Aligned_cols=35  Identities=17%  Similarity=0.263  Sum_probs=31.1

Q ss_pred             HhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565           29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (324)
Q Consensus        29 l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d   64 (324)
                      ++..+|+|+|.|++|.++|..|...|.. ++++|..
T Consensus        14 ~~~~~v~viG~G~~G~~~A~~L~~~G~~-V~~~d~~   48 (480)
T PRK01438         14 WQGLRVVVAGLGVSGFAAADALLELGAR-VTVVDDG   48 (480)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCE-EEEEeCC
Confidence            5677899999999999999999999985 9998863

>TIGR01759 MalateDH-SF1 malate dehydrogenase

Probab=94.98  E-value=0.075  Score=49.76  Aligned_cols=78  Identities=17%  Similarity=0.127  Sum_probs=51.5

Q ss_pred             CcEEEEcC-chhHHHHHHHHHHhCCC------cEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhC-CC
Q 020565           32 SHILVCGM-KGTVAEFCKNIVLAGVG------SLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFN-PM  103 (324)
Q Consensus        32 ~~VliiG~-g~lGsei~k~L~~~Gv~------~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~ln-p~  103 (324)
                      .||.|||+ |.+|+.++..|+..|+-      ++.|+|-..                    .+.|++..+--|.... |.
T Consensus         4 ~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~--------------------~~~~a~g~a~Dl~~~~~~~   63 (323)
T TIGR01759         4 VRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPP--------------------AMKALEGVAMELEDCAFPL   63 (323)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCC--------------------cccccchHHHHHhhccccc
Confidence            58999998 99999999999999974      588887610                    2233444455555554 33


Q ss_pred             CeEeEeeCCCCCCchhhcCCccEEEEcCCC
Q 020565          104 VRVSVEKGDLSSLDGEFYDKFDVVVVSCCS  133 (324)
Q Consensus       104 v~v~~~~~~~~~~~~~~~~~~diVi~~~~~  133 (324)
                      .. ..   .+.....+.++++|+||.+...
T Consensus        64 ~~-~~---~i~~~~~~~~~daDvVVitAG~   89 (323)
T TIGR01759        64 LA-GV---VATTDPEEAFKDVDAALLVGAF   89 (323)
T ss_pred             cC-Cc---EEecChHHHhCCCCEEEEeCCC
Confidence            22 11   1112235678899999988764

This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=94.97  E-value=0.097  Score=48.66  Aligned_cols=34  Identities=12%  Similarity=0.105  Sum_probs=29.4

Q ss_pred             cCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCc
Q 020565           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV   65 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~   65 (324)
                      +.+|+|+|+|++|+.++..|+.+|. .++++..+.
T Consensus         5 ~m~I~IiG~GaiG~~lA~~L~~~g~-~V~~~~r~~   38 (313)
T PRK06249          5 TPRIGIIGTGAIGGFYGAMLARAGF-DVHFLLRSD   38 (313)
T ss_pred             CcEEEEECCCHHHHHHHHHHHHCCC-eEEEEEeCC
Confidence            3589999999999999999999995 588887654

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=94.96  E-value=0.15  Score=47.94  Aligned_cols=91  Identities=11%  Similarity=0.094  Sum_probs=59.0

Q ss_pred             HHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeE
Q 020565           27 RRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRV  106 (324)
Q Consensus        27 ~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v  106 (324)
                      ..|+.++|.|||+|.+|..+|+.|...|.. +..+|...-.             ..   +                .+. 
T Consensus       142 ~~l~g~~VgIIG~G~IG~~vA~~L~~~G~~-V~~~d~~~~~-------------~~---~----------------~~~-  187 (330)
T PRK12480        142 KPVKNMTVAIIGTGRIGAATAKIYAGFGAT-ITAYDAYPNK-------------DL---D----------------FLT-  187 (330)
T ss_pred             cccCCCEEEEECCCHHHHHHHHHHHhCCCE-EEEEeCChhH-------------hh---h----------------hhh-
Confidence            458899999999999999999999999974 8888752100             00   0                000 


Q ss_pred             eEeeCCCCCCchhhcCCccEEEEcCC-CHHHHHHHHHHH-HhccCCccEEEee
Q 020565          107 SVEKGDLSSLDGEFYDKFDVVVVSCC-SVTTKKLINEKC-RKLSKRVAFYTVD  157 (324)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~diVi~~~~-~~~~~~~l~~~~-~~~~~~ip~i~~~  157 (324)
                            ......+.++++|+|+.+.- +.+++..+++-. ..++.+..+|+++
T Consensus       188 ------~~~~l~ell~~aDiVil~lP~t~~t~~li~~~~l~~mk~gavlIN~a  234 (330)
T PRK12480        188 ------YKDSVKEAIKDADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAA  234 (330)
T ss_pred             ------ccCCHHHHHhcCCEEEEeCCCcHHHHHHHhHHHHhcCCCCcEEEEcC
Confidence                  11123567889999988875 455666665433 2333455566555

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=94.94  E-value=0.19  Score=48.55  Aligned_cols=35  Identities=9%  Similarity=0.130  Sum_probs=31.1

Q ss_pred             HhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565           29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (324)
Q Consensus        29 l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d   64 (324)
                      +...+|+|+|+|.+|..+++.+...|. +++++|.+
T Consensus       200 l~GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d  234 (413)
T cd00401         200 IAGKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVD  234 (413)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence            467899999999999999999999999 58888763

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme

Probab=94.93  E-value=0.11  Score=46.74  Aligned_cols=40  Identities=18%  Similarity=0.284  Sum_probs=36.5

Q ss_pred             HHHhcCcEEEEcCchhHHHHHHHHHHhCCC----------cEEEEcCCcc
Q 020565           27 RRLSKSHILVCGMKGTVAEFCKNIVLAGVG----------SLTLMDDRVV   66 (324)
Q Consensus        27 ~~l~~~~VliiG~g~lGsei~k~L~~~Gv~----------~i~lvD~d~v   66 (324)
                      ++|++.||+++|+|+.|.-+++.|..+|+.          +|.++|..-+
T Consensus        21 ~~l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gl   70 (254)
T cd00762          21 KKISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGL   70 (254)
T ss_pred             CChhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCe
Confidence            579999999999999999999999999997          8999998643

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut

>TIGR00518 alaDH alanine dehydrogenase

Probab=94.92  E-value=0.064  Score=51.20  Aligned_cols=35  Identities=14%  Similarity=0.124  Sum_probs=31.6

Q ss_pred             HhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565           29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (324)
Q Consensus        29 l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d   64 (324)
                      +...+|+|+|+|.+|..+++.|...|+ +++++|.+
T Consensus       165 l~~~~VlViGaG~vG~~aa~~a~~lGa-~V~v~d~~  199 (370)
T TIGR00518       165 VEPGDVTIIGGGVVGTNAAKMANGLGA-TVTILDIN  199 (370)
T ss_pred             CCCceEEEEcCCHHHHHHHHHHHHCCC-eEEEEECC
Confidence            567889999999999999999999999 59998873

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=94.92  E-value=0.052  Score=50.17  Aligned_cols=115  Identities=10%  Similarity=0.065  Sum_probs=67.2

Q ss_pred             cEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhh-CCCCeEeEeeC
Q 020565           33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDF-NPMVRVSVEKG  111 (324)
Q Consensus        33 ~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~l-np~v~v~~~~~  111 (324)
                      +|.+||+|.+|..++++|...|.. ++++|.+.-....+.        ..   |...+....+.+++. ++++-+...+.
T Consensus         2 ~Ig~IGlG~mG~~mA~~L~~~g~~-v~v~dr~~~~~~~~~--------~~---g~~~~~s~~~~~~~~~~advVi~~vp~   69 (299)
T PRK12490          2 KLGLIGLGKMGGNMAERLREDGHE-VVGYDVNQEAVDVAG--------KL---GITARHSLEELVSKLEAPRTIWVMVPA   69 (299)
T ss_pred             EEEEEcccHHHHHHHHHHHhCCCE-EEEEECCHHHHHHHH--------HC---CCeecCCHHHHHHhCCCCCEEEEEecC
Confidence            699999999999999999999975 888887532211111        11   222222222222222 23444433332


Q ss_pred             C-C-CCCchh---hcCCccEEEEcC-CCHHHHHHHHHHHHhccCCccEEEeeecCc
Q 020565          112 D-L-SSLDGE---FYDKFDVVVVSC-CSVTTKKLINEKCRKLSKRVAFYTVDCRDS  161 (324)
Q Consensus       112 ~-~-~~~~~~---~~~~~diVi~~~-~~~~~~~~l~~~~~~~~~~ip~i~~~~~G~  161 (324)
                      . . .+....   .++.-.+||+++ .++.....+.+.+.+  +++.|+++.+.|.
T Consensus        70 ~~~~~~v~~~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~--~g~~~vdapV~G~  123 (299)
T PRK12490         70 GEVTESVIKDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAE--RGIHYVDCGTSGG  123 (299)
T ss_pred             chHHHHHHHHHhccCCCCCEEEECCCCCchhHHHHHHHHHH--cCCeEEeCCCCCC
Confidence            2 1 111112   233445888874 456677778888888  8888998777765

>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional

Probab=94.91  E-value=0.12  Score=49.19  Aligned_cols=109  Identities=10%  Similarity=0.076  Sum_probs=61.5

Q ss_pred             hcCcEEEEcCchhHHHHHHHHHHhCC------CcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhC--
Q 020565           30 SKSHILVCGMKGTVAEFCKNIVLAGV------GSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFN--  101 (324)
Q Consensus        30 ~~~~VliiG~g~lGsei~k~L~~~Gv------~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~ln--  101 (324)
                      ...+|.|+|+|+.|+.+|..|+..|.      .+++++..+.               ++.  ++.-++.+.+.  ..|  
T Consensus        10 ~~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~---------------~~~--~~~~~~~in~~--~~N~~   70 (365)
T PTZ00345         10 GPLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEE---------------IVE--GEKLSDIINTK--HENVK   70 (365)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecc---------------ccc--chHHHHHHHhc--CCCcc
Confidence            34589999999999999999999984      3567764321               110  22222221111  112  


Q ss_pred             --CCCeEeEeeCCC--CCCchhhcCCccEEEEcCCCHHHHHHHHHHHH--hccCCccEEEeeecCc
Q 020565          102 --PMVRVSVEKGDL--SSLDGEFYDKFDVVVVSCCSVTTKKLINEKCR--KLSKRVAFYTVDCRDS  161 (324)
Q Consensus       102 --p~v~v~~~~~~~--~~~~~~~~~~~diVi~~~~~~~~~~~l~~~~~--~~~~~ip~i~~~~~G~  161 (324)
                        |.+++   +..+  +....+.+++.|+||.+.-+...+..+.++..  .+..+.++|++ +-|+
T Consensus        71 ylp~~~L---p~ni~~tsdl~eav~~aDiIvlAVPsq~l~~vl~~l~~~~~l~~~~~iIS~-aKGI  132 (365)
T PTZ00345         71 YLPGIKL---PDNIVAVSDLKEAVEDADLLIFVIPHQFLESVLSQIKENNNLKKHARAISL-TKGI  132 (365)
T ss_pred             cCCCCcC---CCceEEecCHHHHHhcCCEEEEEcChHHHHHHHHHhccccccCCCCEEEEE-eCCc
Confidence              22221   1111  12234567899999999988777766666543  22234445544 3443

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=94.91  E-value=0.19  Score=49.86  Aligned_cols=32  Identities=16%  Similarity=0.256  Sum_probs=28.9

Q ss_pred             CcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (324)
Q Consensus        32 ~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d   64 (324)
                      .+|.|||+|.+|+.+|.+|+.+|. .++++|.+
T Consensus         5 ~kIavIG~G~MG~~iA~~la~~G~-~V~v~D~~   36 (495)
T PRK07531          5 MKAACIGGGVIGGGWAARFLLAGI-DVAVFDPH   36 (495)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCC
Confidence            479999999999999999999998 48998873

>PRK13304 L-aspartate dehydrogenase; Reviewed

Probab=94.90  E-value=0.16  Score=46.18  Aligned_cols=32  Identities=16%  Similarity=0.180  Sum_probs=25.0

Q ss_pred             cEEEEcCchhHHHHHHHHHHhC--CCcEEEEcCC
Q 020565           33 HILVCGMKGTVAEFCKNIVLAG--VGSLTLMDDR   64 (324)
Q Consensus        33 ~VliiG~g~lGsei~k~L~~~G--v~~i~lvD~d   64 (324)
                      +|.|||+|.+|..+++.|...+  +.-+.++|.+
T Consensus         3 rIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~   36 (265)
T PRK13304          3 KIGIVGCGAIASLITKAILSGRINAELYAFYDRN   36 (265)
T ss_pred             EEEEECccHHHHHHHHHHHcCCCCeEEEEEECCC
Confidence            7999999999999999998764  3334456653

>PRK06928 pyrroline-5-carboxylate reductase; Reviewed

Probab=94.90  E-value=0.19  Score=45.89  Aligned_cols=91  Identities=14%  Similarity=0.183  Sum_probs=53.4

Q ss_pred             cEEEEcCchhHHHHHHHHHHhCC---CcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEe
Q 020565           33 HILVCGMKGTVAEFCKNIVLAGV---GSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVE  109 (324)
Q Consensus        33 ~VliiG~g~lGsei~k~L~~~Gv---~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~  109 (324)
                      +|.|||+|.+|..+++.|...|.   .++.+++.+.                     ..+.+    .+.+..+.+.+   
T Consensus         3 ~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~---------------------~~~~~----~l~~~~~~~~~---   54 (277)
T PRK06928          3 KIGFIGYGSMADMIATKLLETEVATPEEIILYSSSK---------------------NEHFN----QLYDKYPTVEL---   54 (277)
T ss_pred             EEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCc---------------------HHHHH----HHHHHcCCeEE---
Confidence            69999999999999999999983   4566665421                     11111    12222222221   


Q ss_pred             eCCCCCCchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEE
Q 020565          110 KGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYT  155 (324)
Q Consensus       110 ~~~~~~~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~  155 (324)
                          .....+..+++|+||.|.-+......+.++...+..+..+|+
T Consensus        55 ----~~~~~e~~~~aDvVilavpp~~~~~vl~~l~~~l~~~~~ivS   96 (277)
T PRK06928         55 ----ADNEAEIFTKCDHSFICVPPLAVLPLLKDCAPVLTPDRHVVS   96 (277)
T ss_pred             ----eCCHHHHHhhCCEEEEecCHHHHHHHHHHHHhhcCCCCEEEE
Confidence                112234567899999998876666556555432223444554

>COG0281 SfcA Malic enzyme [Energy production and conversion]

Probab=94.88  E-value=0.085  Score=50.36  Aligned_cols=106  Identities=11%  Similarity=0.129  Sum_probs=68.1

Q ss_pred             HHHhcCcEEEEcCchhHHHHHHHHHHhCCC--cEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCC
Q 020565           27 RRLSKSHILVCGMKGTVAEFCKNIVLAGVG--SLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMV  104 (324)
Q Consensus        27 ~~l~~~~VliiG~g~lGsei~k~L~~~Gv~--~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v  104 (324)
                      ++|++.+|++.|+|+-|..+++.|..+|+.  +|.++|..-+-..+...-      +.   ++.|.+.+.+......   
T Consensus       195 k~l~d~kiv~~GAGAAgiaia~~l~~~g~~~~~i~~~D~~G~l~~~r~~~------~~---~~~k~~~a~~~~~~~~---  262 (432)
T COG0281         195 KKLKDQKIVINGAGAAGIAIADLLVAAGVKEENIFVVDRKGLLYDGREDL------TM---NQKKYAKAIEDTGERT---  262 (432)
T ss_pred             CCccceEEEEeCCcHHHHHHHHHHHHhCCCcccEEEEecCCcccCCCccc------cc---chHHHHHHHhhhcccc---
Confidence            689999999999999999999999999998  999999864433322110      12   5556654433322222   


Q ss_pred             eEeEeeCCCCCCchhhcCCccEEEEcCCC-HHHHHHHHHHHHhccCCccEEEeeecCc
Q 020565          105 RVSVEKGDLSSLDGEFYDKFDVVVVSCCS-VTTKKLINEKCRKLSKRVAFYTVDCRDS  161 (324)
Q Consensus       105 ~v~~~~~~~~~~~~~~~~~~diVi~~~~~-~~~~~~l~~~~~~~~~~ip~i~~~~~G~  161 (324)
                      .            .+-+.+.|+.|-++.. .-+..++.+.+..     |.|.+-++..
T Consensus       263 ~------------~~~~~~adv~iG~S~~G~~t~e~V~~Ma~~-----PiIfalaNP~  303 (432)
T COG0281         263 L------------DLALAGADVLIGVSGVGAFTEEMVKEMAKH-----PIIFALANPT  303 (432)
T ss_pred             c------------cccccCCCEEEEcCCCCCcCHHHHHHhccC-----CEEeecCCCC
Confidence            0            1135677888877764 2234455555533     7776655543

>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

Probab=94.87  E-value=0.067  Score=48.47  Aligned_cols=72  Identities=19%  Similarity=0.161  Sum_probs=47.3

Q ss_pred             EEEEcC-chhHHHHHHHHHHhC--C-CcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCC---CCeE
Q 020565           34 ILVCGM-KGTVAEFCKNIVLAG--V-GSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNP---MVRV  106 (324)
Q Consensus        34 VliiG~-g~lGsei~k~L~~~G--v-~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp---~v~v  106 (324)
                      |.|||+ |.+|..++..|+..|  . .+++|+|.+.                      .|++.....+++...   ..++
T Consensus         1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~----------------------~~l~~~~~dl~~~~~~~~~~~i   58 (263)
T cd00650           1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDE----------------------EKLKGVAMDLQDAVEPLADIKV   58 (263)
T ss_pred             CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCc----------------------ccchHHHHHHHHhhhhccCcEE
Confidence            579999 899999999999999  4 5799998632                      222333333444432   2344


Q ss_pred             eEeeCCCCCCchhhcCCccEEEEcCC
Q 020565          107 SVEKGDLSSLDGEFYDKFDVVVVSCC  132 (324)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~diVi~~~~  132 (324)
                      +..     ....+.++++|+||.+..
T Consensus        59 ~~~-----~d~~~~~~~aDiVv~t~~   79 (263)
T cd00650          59 SIT-----DDPYEAFKDADVVIITAG   79 (263)
T ss_pred             EEC-----CchHHHhCCCCEEEECCC
Confidence            331     112456789999999764

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=94.87  E-value=0.1  Score=48.96  Aligned_cols=32  Identities=22%  Similarity=0.269  Sum_probs=28.7

Q ss_pred             CcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (324)
Q Consensus        32 ~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d   64 (324)
                      .+|+|||+|.+|+.++..|+.+|. +++++|.+
T Consensus         3 mkI~IiG~G~mG~~~A~~L~~~G~-~V~~~~r~   34 (341)
T PRK08229          3 ARICVLGAGSIGCYLGGRLAAAGA-DVTLIGRA   34 (341)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCC-cEEEEecH
Confidence            479999999999999999999996 48888864

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=94.86  E-value=0.16  Score=47.19  Aligned_cols=33  Identities=12%  Similarity=0.102  Sum_probs=29.1

Q ss_pred             cCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d   64 (324)
                      ..+|.|+|+|.+|+.++++|+..|. .++++|.+
T Consensus         4 ~m~I~iiG~G~~G~~lA~~l~~~G~-~V~~~~r~   36 (308)
T PRK14619          4 PKTIAILGAGAWGSTLAGLASANGH-RVRVWSRR   36 (308)
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            3579999999999999999999996 48888764

>PRK09242 tropinone reductase; Provisional

Probab=94.83  E-value=0.18  Score=44.97  Aligned_cols=81  Identities=17%  Similarity=0.242  Sum_probs=54.8

Q ss_pred             HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEe
Q 020565           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS  107 (324)
Q Consensus        29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~  107 (324)
                      +++++++|.|+ |++|.++++.|+..|.. +++++.                      ...+.+...+.+...+|..++.
T Consensus         7 ~~~k~~lItGa~~gIG~~~a~~l~~~G~~-v~~~~r----------------------~~~~~~~~~~~l~~~~~~~~~~   63 (257)
T PRK09242          7 LDGQTALITGASKGIGLAIAREFLGLGAD-VLIVAR----------------------DADALAQARDELAEEFPEREVH   63 (257)
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHcCCE-EEEEeC----------------------CHHHHHHHHHHHHhhCCCCeEE
Confidence            56789999996 78999999999999974 777764                      2223445556666666666666


Q ss_pred             EeeCCCCCCc---------hhhcCCccEEEEcCC
Q 020565          108 VEKGDLSSLD---------GEFYDKFDVVVVSCC  132 (324)
Q Consensus       108 ~~~~~~~~~~---------~~~~~~~diVi~~~~  132 (324)
                      ....++.+..         .+.+...|+||.+..
T Consensus        64 ~~~~Dl~~~~~~~~~~~~~~~~~g~id~li~~ag   97 (257)
T PRK09242         64 GLAADVSDDEDRRAILDWVEDHWDGLHILVNNAG   97 (257)
T ss_pred             EEECCCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            6666654311         122346788877664

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=94.82  E-value=0.29  Score=49.16  Aligned_cols=108  Identities=16%  Similarity=0.182  Sum_probs=61.7

Q ss_pred             HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhC------
Q 020565           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFN------  101 (324)
Q Consensus        29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~ln------  101 (324)
                      ...+.|+|.|+ |++|..+++.|+..|.. +++++.+                      ..+.+.+.+.+.++.      
T Consensus        78 ~~gKvVLVTGATGgIG~aLAr~LLk~G~~-Vval~Rn----------------------~ekl~~l~~~l~~~~L~~~Ga  134 (576)
T PLN03209         78 KDEDLAFVAGATGKVGSRTVRELLKLGFR-VRAGVRS----------------------AQRAESLVQSVKQMKLDVEGT  134 (576)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCe-EEEEeCC----------------------HHHHHHHHHHhhhhccccccc
Confidence            34567999996 89999999999999975 6655431                      112333333332211      


Q ss_pred             -CCCeEeEeeCCCCCC--chhhcCCccEEEEcCCCH---------------HHHHHHHHHHHhccCCc-cEEEeeecCc
Q 020565          102 -PMVRVSVEKGDLSSL--DGEFYDKFDVVVVSCCSV---------------TTKKLINEKCRKLSKRV-AFYTVDCRDS  161 (324)
Q Consensus       102 -p~v~v~~~~~~~~~~--~~~~~~~~diVi~~~~~~---------------~~~~~l~~~~~~~~~~i-p~i~~~~~G~  161 (324)
                       +..++..+..++.+.  ....+.+.|+||.+....               .....+-+.|+.  .++ -||+.++.|.
T Consensus       135 ~~~~~v~iV~gDLtD~esI~~aLggiDiVVn~AG~~~~~v~d~~~~~~VN~~Gt~nLl~Aa~~--agVgRIV~VSSiga  211 (576)
T PLN03209        135 QPVEKLEIVECDLEKPDQIGPALGNASVVICCIGASEKEVFDVTGPYRIDYLATKNLVDAATV--AKVNHFILVTSLGT  211 (576)
T ss_pred             cccCceEEEEecCCCHHHHHHHhcCCCEEEEccccccccccchhhHHHHHHHHHHHHHHHHHH--hCCCEEEEEccchh
Confidence             112344555555542  234567899999876421               112344456665  443 4666666553

>KOG4169 consensus 15-hydroxyprostaglandin dehydrogenase and related dehydrogenases [Lipid transport and metabolism; General function prediction only]

Probab=94.82  E-value=0.068  Score=47.01  Aligned_cols=79  Identities=24%  Similarity=0.333  Sum_probs=58.8

Q ss_pred             HhcCcEEEEc-CchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEe
Q 020565           29 LSKSHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS  107 (324)
Q Consensus        29 l~~~~VliiG-~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~  107 (324)
                      ++.++++++| +||+|-+++|.|...|+..+.+.|.    .+|                    -.+..+|+++||.+++-
T Consensus         3 ~tGKna~vtggagGIGl~~sk~Ll~kgik~~~i~~~----~En--------------------~~a~akL~ai~p~~~v~   58 (261)
T KOG4169|consen    3 LTGKNALVTGGAGGIGLATSKALLEKGIKVLVIDDS----EEN--------------------PEAIAKLQAINPSVSVI   58 (261)
T ss_pred             ccCceEEEecCCchhhHHHHHHHHHcCchheeehhh----hhC--------------------HHHHHHHhccCCCceEE
Confidence            4567788876 8999999999999999997777655    222                    23456799999999999


Q ss_pred             EeeCCCCCC--c----h---hhcCCccEEEEcC
Q 020565          108 VEKGDLSSL--D----G---EFYDKFDVVVVSC  131 (324)
Q Consensus       108 ~~~~~~~~~--~----~---~~~~~~diVi~~~  131 (324)
                      .+.-++...  .    +   ..+...|++|+..
T Consensus        59 F~~~DVt~~~~~~~~f~ki~~~fg~iDIlINgA   91 (261)
T KOG4169|consen   59 FIKCDVTNRGDLEAAFDKILATFGTIDILINGA   91 (261)
T ss_pred             EEEeccccHHHHHHHHHHHHHHhCceEEEEccc
Confidence            988887642  1    1   2245678888654

>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent

Probab=94.81  E-value=0.081  Score=50.63  Aligned_cols=77  Identities=19%  Similarity=0.177  Sum_probs=54.2

Q ss_pred             CcEEEEcC-chhHHHHHHHHHHhCCCc------EEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhC-CC
Q 020565           32 SHILVCGM-KGTVAEFCKNIVLAGVGS------LTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFN-PM  103 (324)
Q Consensus        32 ~~VliiG~-g~lGsei~k~L~~~Gv~~------i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~ln-p~  103 (324)
                      .||.|+|+ |.+|+.+|..|+..|+-.      ++|+|-                 |+   .+.|++..+--|.... |.
T Consensus        45 ~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~di-----------------D~---~~~~a~g~a~DL~d~a~~~  104 (387)
T TIGR01757        45 VNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGS-----------------ER---SKEALEGVAMELEDSLYPL  104 (387)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEecc-----------------Cc---cchhhhHHHHHHHHhhhhh
Confidence            58999999 999999999999999854      556644                 33   5556666666677655 44


Q ss_pred             C-eEeEeeCCCCCCchhhcCCccEEEEcCCC
Q 020565          104 V-RVSVEKGDLSSLDGEFYDKFDVVVVSCCS  133 (324)
Q Consensus       104 v-~v~~~~~~~~~~~~~~~~~~diVi~~~~~  133 (324)
                      . ++....     ...+.++++|+||.+...
T Consensus       105 ~~~v~i~~-----~~y~~~kdaDIVVitAG~  130 (387)
T TIGR01757       105 LREVSIGI-----DPYEVFEDADWALLIGAK  130 (387)
T ss_pred             cCceEEec-----CCHHHhCCCCEEEECCCC
Confidence            3 222111     235678999999988754

This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.

>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+))

Probab=94.76  E-value=0.2  Score=47.34  Aligned_cols=105  Identities=10%  Similarity=0.029  Sum_probs=60.8

Q ss_pred             cEEEEcCchhHHHHHHHHHHhCC-------CcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhh--CC-
Q 020565           33 HILVCGMKGTVAEFCKNIVLAGV-------GSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDF--NP-  102 (324)
Q Consensus        33 ~VliiG~g~lGsei~k~L~~~Gv-------~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~l--np-  102 (324)
                      +|.|||+|+.|+.+|..|+..|.       .+++++..+.               ++.  +..-    .+.+++-  |+ 
T Consensus         1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~---------------~~~--~~~~----~~~in~~~~n~~   59 (342)
T TIGR03376         1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEE---------------EIE--GRNL----TEIINTTHENVK   59 (342)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEecc---------------ccC--CHHH----HHHHHhcCCCcc
Confidence            58999999999999999999882       4577765411               110  1111    2222221  11 


Q ss_pred             ---CCeEeEeeCCC--CCCchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEeeecCce
Q 020565          103 ---MVRVSVEKGDL--SSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSC  162 (324)
Q Consensus       103 ---~v~v~~~~~~~--~~~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~~~~G~~  162 (324)
                         .++.   +..+  +....+.++++|+||.+.-+...+..+.++...+..+.++|++ +-|+.
T Consensus        60 ylpgi~L---p~~i~at~dl~eal~~ADiIIlAVPs~~i~~vl~~l~~~l~~~~~iVs~-tKGie  120 (342)
T TIGR03376        60 YLPGIKL---PANLVAVPDLVEAAKGADILVFVIPHQFLEGICKQLKGHVKPNARAISC-IKGLE  120 (342)
T ss_pred             ccCCCcC---CCCeEEECCHHHHHhcCCEEEEECChHHHHHHHHHHHhhcCCCCEEEEE-eCCcc
Confidence               1111   1111  1233566789999999988877766666654333355666654 55543

Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.

>PRK08251 short chain dehydrogenase; Provisional

Probab=94.75  E-value=0.22  Score=43.96  Aligned_cols=78  Identities=24%  Similarity=0.311  Sum_probs=50.5

Q ss_pred             cCcEEEEc-CchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEe
Q 020565           31 KSHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVE  109 (324)
Q Consensus        31 ~~~VliiG-~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~  109 (324)
                      +++++|.| .|++|..+++.|+..|. ++++++.+                      ..+.+.+.+.+.+.+|..++...
T Consensus         2 ~k~vlItGas~giG~~la~~l~~~g~-~v~~~~r~----------------------~~~~~~~~~~~~~~~~~~~~~~~   58 (248)
T PRK08251          2 RQKILITGASSGLGAGMAREFAAKGR-DLALCARR----------------------TDRLEELKAELLARYPGIKVAVA   58 (248)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCC----------------------HHHHHHHHHHHHhhCCCceEEEE
Confidence            46799999 57899999999999995 57777652                      12334445555666666666666


Q ss_pred             eCCCCCCc---------hhhcCCccEEEEcC
Q 020565          110 KGDLSSLD---------GEFYDKFDVVVVSC  131 (324)
Q Consensus       110 ~~~~~~~~---------~~~~~~~diVi~~~  131 (324)
                      ..++.+..         ...+...|+||.+.
T Consensus        59 ~~D~~~~~~~~~~~~~~~~~~~~id~vi~~a   89 (248)
T PRK08251         59 ALDVNDHDQVFEVFAEFRDELGGLDRVIVNA   89 (248)
T ss_pred             EcCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            66655321         11234567777654

>PLN02240 UDP-glucose 4-epimerase

Probab=94.74  E-value=0.29  Score=45.83  Aligned_cols=34  Identities=26%  Similarity=0.330  Sum_probs=28.8

Q ss_pred             HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      |++++|+|.|. |.+|+.+++.|+..|. +++++|.
T Consensus         3 ~~~~~vlItGatG~iG~~l~~~L~~~g~-~V~~~~~   37 (352)
T PLN02240          3 LMGRTILVTGGAGYIGSHTVLQLLLAGY-KVVVIDN   37 (352)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeC
Confidence            56789999996 8899999999999996 5777764

>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]

Probab=94.72  E-value=0.15  Score=46.29  Aligned_cols=63  Identities=29%  Similarity=0.352  Sum_probs=52.0

Q ss_pred             HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEe
Q 020565           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS  107 (324)
Q Consensus        29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~  107 (324)
                      ++..+++|-|+ +|+|-++|+.|++-|.. +.|+-.                      -+.|-+.+++.|+... .+++.
T Consensus         4 ~~~~~~lITGASsGIG~~~A~~lA~~g~~-liLvaR----------------------~~~kL~~la~~l~~~~-~v~v~   59 (265)
T COG0300           4 MKGKTALITGASSGIGAELAKQLARRGYN-LILVAR----------------------REDKLEALAKELEDKT-GVEVE   59 (265)
T ss_pred             CCCcEEEEECCCchHHHHHHHHHHHCCCE-EEEEeC----------------------cHHHHHHHHHHHHHhh-CceEE
Confidence            46789999997 78999999999999986 666533                      5568888999999888 78888


Q ss_pred             EeeCCCCC
Q 020565          108 VEKGDLSS  115 (324)
Q Consensus       108 ~~~~~~~~  115 (324)
                      ++..++++
T Consensus        60 vi~~DLs~   67 (265)
T COG0300          60 VIPADLSD   67 (265)
T ss_pred             EEECcCCC
Confidence            88888764

>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=94.70  E-value=0.13  Score=47.79  Aligned_cols=103  Identities=14%  Similarity=0.117  Sum_probs=59.2

Q ss_pred             CcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEeeC
Q 020565           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKG  111 (324)
Q Consensus        32 ~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~~  111 (324)
                      .+|.|+|.|+-|+.+|+.|+..| ..++++-.+.-...+++..   +.+                 .+.-|.+.+.. .-
T Consensus         2 ~kI~ViGaGswGTALA~~la~ng-~~V~lw~r~~~~~~~i~~~---~~N-----------------~~yLp~i~lp~-~l   59 (329)
T COG0240           2 MKIAVIGAGSWGTALAKVLARNG-HEVRLWGRDEEIVAEINET---REN-----------------PKYLPGILLPP-NL   59 (329)
T ss_pred             ceEEEEcCChHHHHHHHHHHhcC-CeeEEEecCHHHHHHHHhc---CcC-----------------ccccCCccCCc-cc
Confidence            57999999999999999999999 5577765533222222211   000                 00111111111 11


Q ss_pred             CCCCCchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEe
Q 020565          112 DLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTV  156 (324)
Q Consensus       112 ~~~~~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~  156 (324)
                      ..+....+.++++|+|+.+.-+...+..+.++-..+..+.+++++
T Consensus        60 ~at~Dl~~a~~~ad~iv~avPs~~~r~v~~~l~~~l~~~~~iv~~  104 (329)
T COG0240          60 KATTDLAEALDGADIIVIAVPSQALREVLRQLKPLLLKDAIIVSA  104 (329)
T ss_pred             ccccCHHHHHhcCCEEEEECChHHHHHHHHHHhhhccCCCeEEEE
Confidence            112344666788999999998877776666653222244555443

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=94.67  E-value=0.14  Score=46.98  Aligned_cols=114  Identities=14%  Similarity=0.056  Sum_probs=62.6

Q ss_pred             CcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEeeC
Q 020565           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKG  111 (324)
Q Consensus        32 ~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~~  111 (324)
                      .+|.|||+|.+|..++.+|+..|.. ++++|.+.-....+..        .   |...+....+.++  +.++-+...+.
T Consensus         3 ~~IgviG~G~mG~~~a~~l~~~g~~-v~~~d~~~~~~~~~~~--------~---g~~~~~~~~e~~~--~~d~vi~~vp~   68 (296)
T PRK11559          3 MKVGFIGLGIMGKPMSKNLLKAGYS-LVVYDRNPEAVAEVIA--------A---GAETASTAKAVAE--QCDVIITMLPN   68 (296)
T ss_pred             ceEEEEccCHHHHHHHHHHHHCCCe-EEEEcCCHHHHHHHHH--------C---CCeecCCHHHHHh--cCCEEEEeCCC
Confidence            4799999999999999999999975 7888874322211111        0   1111111111121  22333333221


Q ss_pred             CCC--CC------chhhcCCccEEEEcC-CCHHHHHHHHHHHHhccCCccEEEeeecCc
Q 020565          112 DLS--SL------DGEFYDKFDVVVVSC-CSVTTKKLINEKCRKLSKRVAFYTVDCRDS  161 (324)
Q Consensus       112 ~~~--~~------~~~~~~~~diVi~~~-~~~~~~~~l~~~~~~~~~~ip~i~~~~~G~  161 (324)
                      ...  ..      ....++.-.+||+++ ..+.....+.+.+.+  +++.|+++...|.
T Consensus        69 ~~~~~~v~~~~~~~~~~~~~g~iiid~st~~~~~~~~l~~~~~~--~g~~~~d~pv~g~  125 (296)
T PRK11559         69 SPHVKEVALGENGIIEGAKPGTVVIDMSSIAPLASREIAAALKA--KGIEMLDAPVSGG  125 (296)
T ss_pred             HHHHHHHHcCcchHhhcCCCCcEEEECCCCCHHHHHHHHHHHHH--cCCcEEEcCCCCC
Confidence            110  00      011223345666554 456666778888877  7888888776653

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=94.67  E-value=0.11  Score=48.09  Aligned_cols=31  Identities=23%  Similarity=0.337  Sum_probs=28.2

Q ss_pred             EEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565           34 ILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (324)
Q Consensus        34 VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d   64 (324)
                      |.|||+|.+|+.++..|+..|..+++++|.+
T Consensus         1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~   31 (300)
T cd01339           1 ISIIGAGNVGATLAQLLALKELGDVVLLDIV   31 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhCCCcEEEEEeCC
Confidence            5799999999999999999987689999985

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=94.66  E-value=0.079  Score=46.93  Aligned_cols=114  Identities=15%  Similarity=0.114  Sum_probs=79.0

Q ss_pred             cEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeE--ee
Q 020565           33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV--EK  110 (324)
Q Consensus        33 ~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~--~~  110 (324)
                      ++.+||+|-.|..++++|...|.. +...|-+.-..+.+...           |-.-+..+.+.+.++.+.-.|-.  ..
T Consensus         2 ~iGmiGLGrMG~n~v~rl~~~ghd-vV~yD~n~~av~~~~~~-----------ga~~a~sl~el~~~L~~pr~vWlMvPa   69 (300)
T COG1023           2 QIGMIGLGRMGANLVRRLLDGGHD-VVGYDVNQTAVEELKDE-----------GATGAASLDELVAKLSAPRIVWLMVPA   69 (300)
T ss_pred             cceeeccchhhHHHHHHHHhCCCe-EEEEcCCHHHHHHHHhc-----------CCccccCHHHHHHhcCCCcEEEEEccC
Confidence            477899999999999999999986 77777655444444322           44444556677777766544332  12


Q ss_pred             CCCCC----CchhhcCCccEEEEcCC-CHHHHHHHHHHHHhccCCccEEEeeecC
Q 020565          111 GDLSS----LDGEFYDKFDVVVVSCC-SVTTKKLINEKCRKLSKRVAFYTVDCRD  160 (324)
Q Consensus       111 ~~~~~----~~~~~~~~~diVi~~~~-~~~~~~~l~~~~~~~~~~ip~i~~~~~G  160 (324)
                      .++++    ....+++.-|+||+... +.....+-.+...+  +++-|+++++.|
T Consensus        70 g~it~~vi~~la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~--kgi~flD~GTSG  122 (300)
T COG1023          70 GDITDAVIDDLAPLLSAGDIVIDGGNSNYKDSLRRAKLLAE--KGIHFLDVGTSG  122 (300)
T ss_pred             CCchHHHHHHHHhhcCCCCEEEECCccchHHHHHHHHHHHh--cCCeEEeccCCC
Confidence            22332    23456788899999865 56666666667777  899999999987

>PRK08655 prephenate dehydrogenase; Provisional

Probab=94.65  E-value=0.2  Score=48.94  Aligned_cols=31  Identities=16%  Similarity=0.222  Sum_probs=26.9

Q ss_pred             cEEEEc-CchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565           33 HILVCG-MKGTVAEFCKNIVLAGVGSLTLMDDR   64 (324)
Q Consensus        33 ~VliiG-~g~lGsei~k~L~~~Gv~~i~lvD~d   64 (324)
                      +|+||| +|.+|..+++.|...|. +++++|.+
T Consensus         2 kI~IIGG~G~mG~slA~~L~~~G~-~V~v~~r~   33 (437)
T PRK08655          2 KISIIGGTGGLGKWFARFLKEKGF-EVIVTGRD   33 (437)
T ss_pred             EEEEEecCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence            699997 89999999999999996 48887753

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.60  E-value=0.24  Score=48.45  Aligned_cols=32  Identities=13%  Similarity=0.126  Sum_probs=28.6

Q ss_pred             CcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (324)
Q Consensus        32 ~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d   64 (324)
                      ++|+|+|.|+.|..+|+.|...|. ++++.|..
T Consensus         1 ~~v~viG~G~sG~s~a~~l~~~G~-~V~~~D~~   32 (459)
T PRK02705          1 AIAHVIGLGRSGIAAARLLKAQGW-EVVVSDRN   32 (459)
T ss_pred             CeEEEEccCHHHHHHHHHHHHCCC-EEEEECCC
Confidence            479999999999999999999997 58888863

>PRK06476 pyrroline-5-carboxylate reductase; Reviewed

Probab=94.58  E-value=0.14  Score=46.24  Aligned_cols=23  Identities=9%  Similarity=0.133  Sum_probs=21.6

Q ss_pred             cEEEEcCchhHHHHHHHHHHhCC
Q 020565           33 HILVCGMKGTVAEFCKNIVLAGV   55 (324)
Q Consensus        33 ~VliiG~g~lGsei~k~L~~~Gv   55 (324)
                      +|.|||+|.+|..+++.|...|.
T Consensus         2 ~IgiIG~G~mG~aia~~L~~~g~   24 (258)
T PRK06476          2 KIGFIGTGAITEAMVTGLLTSPA   24 (258)
T ss_pred             eEEEECcCHHHHHHHHHHHhCCC
Confidence            69999999999999999999985

>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase

Probab=94.55  E-value=0.066  Score=53.58  Aligned_cols=34  Identities=15%  Similarity=0.227  Sum_probs=30.8

Q ss_pred             HhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565           29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        29 l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      +++++|+|+|+||+|..+++.|+..|+ ++++++.
T Consensus       377 ~~~k~vlIlGaGGagrAia~~L~~~G~-~V~i~nR  410 (529)
T PLN02520        377 LAGKLFVVIGAGGAGKALAYGAKEKGA-RVVIANR  410 (529)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEcC
Confidence            567889999999999999999999999 7988764

>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]

Probab=94.52  E-value=0.075  Score=49.26  Aligned_cols=33  Identities=24%  Similarity=0.386  Sum_probs=30.4

Q ss_pred             CcEEEEcCchhHHHHHHHHHHhCCC-cEEEEcCC
Q 020565           32 SHILVCGMKGTVAEFCKNIVLAGVG-SLTLMDDR   64 (324)
Q Consensus        32 ~~VliiG~g~lGsei~k~L~~~Gv~-~i~lvD~d   64 (324)
                      .||.|+|+|.+|+.+|..|+.-+++ ++.|+|-.
T Consensus         1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~   34 (313)
T COG0039           1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDIN   34 (313)
T ss_pred             CeEEEECCChHHHHHHHHHhcccccceEEEEEcc
Confidence            3799999999999999999999999 99999873

>PRK13301 putative L-aspartate dehydrogenase; Provisional

Probab=94.51  E-value=0.03  Score=50.55  Aligned_cols=119  Identities=9%  Similarity=0.074  Sum_probs=68.3

Q ss_pred             CcEEEEcCchhHHHHHHHHHHhCCCcEE---EEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeE
Q 020565           32 SHILVCGMKGTVAEFCKNIVLAGVGSLT---LMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV  108 (324)
Q Consensus        32 ~~VliiG~g~lGsei~k~L~~~Gv~~i~---lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~  108 (324)
                      .||.|||||.+|..+++.|..-+...+.   +.|.+.-....+.             +..++-.-.+.|....|++-++.
T Consensus         3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~-------------~~~~~~~~l~~ll~~~~DlVVE~   69 (267)
T PRK13301          3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALA-------------GRVALLDGLPGLLAWRPDLVVEA   69 (267)
T ss_pred             eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhh-------------ccCcccCCHHHHhhcCCCEEEEC
Confidence            5899999999999999998654332232   3343221111111             11111111334445667777765


Q ss_pred             eeCC-CCCCchhhcC-CccEEEEcCC---CHHHHHHHHHHHHhccCCccEEEeeecCceE
Q 020565          109 EKGD-LSSLDGEFYD-KFDVVVVSCC---SVTTKKLINEKCRKLSKRVAFYTVDCRDSCG  163 (324)
Q Consensus       109 ~~~~-~~~~~~~~~~-~~diVi~~~~---~~~~~~~l~~~~~~~~~~ip~i~~~~~G~~g  163 (324)
                      -... +.+.....++ +.|+|+.+..   +......+.+.|++.+.++.+-++...|+.+
T Consensus        70 A~~~av~e~~~~iL~~g~dlvv~SvGALaD~~~~~~l~~~A~~~g~~i~ipSGAigGlD~  129 (267)
T PRK13301         70 AGQQAIAEHAEGCLTAGLDMIICSAGALADDALRARLIAAAEAGGARIRVPAGAIAGLDY  129 (267)
T ss_pred             CCHHHHHHHHHHHHhcCCCEEEEChhHhcCHHHHHHHHHHHHhCCCEEEEeChHHHhHHH
Confidence            3322 3345566665 7999998865   5557788999998844444444444444433

>PLN02427 UDP-apiose/xylose synthase

Probab=94.50  E-value=0.19  Score=48.00  Aligned_cols=37  Identities=11%  Similarity=0.184  Sum_probs=29.2

Q ss_pred             HHHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           27 RRLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        27 ~~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      +.++..+|+|.|+ |-+|+.+++.|+..|--+++.+|.
T Consensus        10 ~~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r   47 (386)
T PLN02427         10 KPIKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDV   47 (386)
T ss_pred             CcccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEec
Confidence            4566778999996 779999999999985235777764

>PRK06545 prephenate dehydrogenase; Validated

Probab=94.48  E-value=0.25  Score=46.90  Aligned_cols=31  Identities=16%  Similarity=0.233  Sum_probs=27.0

Q ss_pred             CcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        32 ~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      .+|.|||+|.+|..+++.|...|. .+.++|.
T Consensus         1 ~~I~iIG~GliG~siA~~L~~~G~-~v~i~~~   31 (359)
T PRK06545          1 RTVLIVGLGLIGGSLALAIKAAGP-DVFIIGY   31 (359)
T ss_pred             CeEEEEEeCHHHHHHHHHHHhcCC-CeEEEEe
Confidence            369999999999999999999997 4677765

>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases

Probab=94.37  E-value=0.062  Score=50.28  Aligned_cols=33  Identities=15%  Similarity=0.053  Sum_probs=29.3

Q ss_pred             cCcEEEEcC-chhHHHHHHHHHHhCCC------cEEEEcC
Q 020565           31 KSHILVCGM-KGTVAEFCKNIVLAGVG------SLTLMDD   63 (324)
Q Consensus        31 ~~~VliiG~-g~lGsei~k~L~~~Gv~------~i~lvD~   63 (324)
                      -.||.|||+ |.+|+.++..|+..|+-      ++.|+|-
T Consensus         2 p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di   41 (322)
T cd01338           2 PVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLEL   41 (322)
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEec
Confidence            358999999 99999999999999985      5999886

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.34  E-value=0.22  Score=49.09  Aligned_cols=38  Identities=18%  Similarity=0.204  Sum_probs=33.0

Q ss_pred             HHHHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565           25 AQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        25 ~q~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      +...+..++|+|+|+|+.|..+++.|...|. .+++.|.
T Consensus         9 ~~~~~~~~~v~v~G~G~sG~a~a~~L~~~G~-~V~~~D~   46 (473)
T PRK00141          9 ALPQELSGRVLVAGAGVSGRGIAAMLSELGC-DVVVADD   46 (473)
T ss_pred             hcccccCCeEEEEccCHHHHHHHHHHHHCCC-EEEEECC
Confidence            3445677899999999999999999999998 6888885

>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=94.34  E-value=0.32  Score=36.93  Aligned_cols=71  Identities=13%  Similarity=0.048  Sum_probs=51.7

Q ss_pred             cHHHHHHHHHHhhCCCCeEeEe--eCCCCCC---chhhcCCccEEEEcCC--CHHHHHHHHHHHHhccCCccEEEeeecC
Q 020565           88 TIAEVCCDSLKDFNPMVRVSVE--KGDLSSL---DGEFYDKFDVVVVSCC--SVTTKKLINEKCRKLSKRVAFYTVDCRD  160 (324)
Q Consensus        88 ~ka~~~~~~l~~lnp~v~v~~~--~~~~~~~---~~~~~~~~diVi~~~~--~~~~~~~l~~~~~~~~~~ip~i~~~~~G  160 (324)
                      .+.....+.+++.+  .+...+  .......   .+..++..|+||+.++  +......+.+.|++  .++|++.+...|
T Consensus        10 ~~~~~~~~~~~~~G--~~~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t~~vsH~~~~~vk~~akk--~~ip~~~~~~~~   85 (97)
T PF10087_consen   10 DRERRYKRILEKYG--GKLIHHGRDGGDEKKASRLPSKIKKADLVIVFTDYVSHNAMWKVKKAAKK--YGIPIIYSRSRG   85 (97)
T ss_pred             ccHHHHHHHHHHcC--CEEEEEecCCCCccchhHHHHhcCCCCEEEEEeCCcChHHHHHHHHHHHH--cCCcEEEECCCC
Confidence            55666677777755  444455  2222222   4667788999999887  78888999999999  999999988776


Q ss_pred             ce
Q 020565          161 SC  162 (324)
Q Consensus       161 ~~  162 (324)
                      ..
T Consensus        86 ~~   87 (97)
T PF10087_consen   86 VS   87 (97)
T ss_pred             HH
Confidence            54

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.32  E-value=0.13  Score=47.24  Aligned_cols=35  Identities=17%  Similarity=0.254  Sum_probs=31.5

Q ss_pred             HHhcCcEEEEcCch-hHHHHHHHHHHhCCCcEEEEcC
Q 020565           28 RLSKSHILVCGMKG-TVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        28 ~l~~~~VliiG~g~-lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      .++.++|+|+|.|+ +|..++..|...|. .+++++.
T Consensus       156 ~l~Gk~vvViG~gg~vGkpia~~L~~~ga-tVtv~~~  191 (283)
T PRK14192        156 ELAGKHAVVVGRSAILGKPMAMMLLNANA-TVTICHS  191 (283)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHhCCC-EEEEEeC
Confidence            46788999999999 99999999999998 7998764

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=94.29  E-value=0.34  Score=46.92  Aligned_cols=40  Identities=15%  Similarity=0.041  Sum_probs=33.4

Q ss_pred             cEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCC
Q 020565           33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSA   73 (324)
Q Consensus        33 ~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r   73 (324)
                      +|.|||+|-+|..++.+|+..|.. ++++|.+.-....++.
T Consensus         2 kI~vIGlG~~G~~lA~~La~~G~~-V~~~d~~~~~v~~l~~   41 (411)
T TIGR03026         2 KIAVIGLGYVGLPLAALLADLGHE-VTGVDIDQEKVDKLNK   41 (411)
T ss_pred             EEEEECCCchhHHHHHHHHhcCCe-EEEEECCHHHHHHhhc
Confidence            699999999999999999999985 8999886655555544

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=94.28  E-value=0.22  Score=45.96  Aligned_cols=114  Identities=13%  Similarity=0.094  Sum_probs=63.9

Q ss_pred             CcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEeeC
Q 020565           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKG  111 (324)
Q Consensus        32 ~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~~  111 (324)
                      .+|.|||+|.+|..++.+|+..|. .++++|.+.-..+.+...           |...+....+.+++  -++-+...+.
T Consensus         2 ~~Ig~IGlG~mG~~mA~~l~~~G~-~V~v~d~~~~~~~~~~~~-----------g~~~~~s~~~~~~~--aDvVi~~vp~   67 (296)
T PRK15461          2 AAIAFIGLGQMGSPMASNLLKQGH-QLQVFDVNPQAVDALVDK-----------GATPAASPAQAAAG--AEFVITMLPN   67 (296)
T ss_pred             CeEEEEeeCHHHHHHHHHHHHCCC-eEEEEcCCHHHHHHHHHc-----------CCcccCCHHHHHhc--CCEEEEecCC
Confidence            379999999999999999999996 588988754333222110           21111111111211  1222222222


Q ss_pred             CC--CCC------chhhcCCccEEEEcC-CCHHHHHHHHHHHHhccCCccEEEeeecCc
Q 020565          112 DL--SSL------DGEFYDKFDVVVVSC-CSVTTKKLINEKCRKLSKRVAFYTVDCRDS  161 (324)
Q Consensus       112 ~~--~~~------~~~~~~~~diVi~~~-~~~~~~~~l~~~~~~~~~~ip~i~~~~~G~  161 (324)
                      ..  ...      ....++.-.+||+++ .++.....+.+...+  .++.|+++...|.
T Consensus        68 ~~~~~~vl~~~~~i~~~l~~g~lvid~sT~~p~~~~~l~~~l~~--~g~~~ldapV~g~  124 (296)
T PRK15461         68 GDLVRSVLFGENGVCEGLSRDALVIDMSTIHPLQTDKLIADMQA--KGFSMMDVPVGRT  124 (296)
T ss_pred             HHHHHHHHcCcccHhhcCCCCCEEEECCCCCHHHHHHHHHHHHH--cCCcEEEccCCCC
Confidence            10  000      011123334566554 467777788888888  8888888877664

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=94.28  E-value=0.23  Score=45.75  Aligned_cols=35  Identities=14%  Similarity=0.222  Sum_probs=31.6

Q ss_pred             HHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565           28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        28 ~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      .|..++|+|+|+|++|..+++.|...|. +++++|.
T Consensus       148 ~l~gk~v~IiG~G~iG~avA~~L~~~G~-~V~v~~R  182 (287)
T TIGR02853       148 TIHGSNVMVLGFGRTGMTIARTFSALGA-RVFVGAR  182 (287)
T ss_pred             CCCCCEEEEEcChHHHHHHHHHHHHCCC-EEEEEeC
Confidence            4678999999999999999999999997 7888766

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=94.27  E-value=0.16  Score=47.07  Aligned_cols=32  Identities=22%  Similarity=0.139  Sum_probs=29.7

Q ss_pred             CcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        32 ~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      .+|.|||+|-+|+.+|..|+..|.++++++|.
T Consensus         2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi   33 (305)
T TIGR01763         2 KKISVIGAGFVGATTAFRLAEKELADLVLLDV   33 (305)
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeC
Confidence            47999999999999999999999878999997

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=94.24  E-value=0.19  Score=46.19  Aligned_cols=112  Identities=13%  Similarity=0.056  Sum_probs=62.3

Q ss_pred             cEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEeeCC
Q 020565           33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGD  112 (324)
Q Consensus        33 ~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~~~  112 (324)
                      +|.|||+|.+|+.++.+|+..|. +++++|.+.-..+.+..        .   |...+....+.++  +.++-+...+..
T Consensus         1 ~IgvIG~G~mG~~iA~~l~~~G~-~V~~~dr~~~~~~~~~~--------~---g~~~~~~~~~~~~--~aDivi~~vp~~   66 (291)
T TIGR01505         1 KVGFIGLGIMGSPMSINLAKAGY-QLHVTTIGPEVADELLA--------A---GAVTAETARQVTE--QADVIFTMVPDS   66 (291)
T ss_pred             CEEEEEecHHHHHHHHHHHHCCC-eEEEEcCCHHHHHHHHH--------C---CCcccCCHHHHHh--cCCEEEEecCCH
Confidence            58999999999999999999997 48888875422222111        1   2222211222222  223333333221


Q ss_pred             C--CCC------chhhcCCccEEEEcC-CCHHHHHHHHHHHHhccCCccEEEeeecC
Q 020565          113 L--SSL------DGEFYDKFDVVVVSC-CSVTTKKLINEKCRKLSKRVAFYTVDCRD  160 (324)
Q Consensus       113 ~--~~~------~~~~~~~~diVi~~~-~~~~~~~~l~~~~~~~~~~ip~i~~~~~G  160 (324)
                      .  ...      ....+..-.+||+++ .++.....+.+.+++  .++.|+.+...|
T Consensus        67 ~~~~~v~~~~~~~~~~~~~g~iivd~st~~~~~~~~l~~~l~~--~g~~~~~~pv~g  121 (291)
T TIGR01505        67 PQVEEVAFGENGIIEGAKPGKTLVDMSSISPIESKRFAKAVKE--KGIDYLDAPVSG  121 (291)
T ss_pred             HHHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHH--cCCCEEecCCCC
Confidence            1  000      011223334666654 455566678888888  788888865554

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed

Probab=94.17  E-value=0.11  Score=51.21  Aligned_cols=34  Identities=21%  Similarity=0.488  Sum_probs=30.3

Q ss_pred             HhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565           29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        29 l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      +++++++|+|+||+|..+++.|+..|. +++++|.
T Consensus       330 ~~~k~vlIiGaGgiG~aia~~L~~~G~-~V~i~~R  363 (477)
T PRK09310        330 LNNQHVAIVGAGGAAKAIATTLARAGA-ELLIFNR  363 (477)
T ss_pred             cCCCEEEEEcCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence            567899999999999999999999998 7888764

>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases

Probab=94.13  E-value=0.14  Score=47.71  Aligned_cols=32  Identities=22%  Similarity=0.222  Sum_probs=29.2

Q ss_pred             cEEEEcC-chhHHHHHHHHHHhCC-CcEEEEcCC
Q 020565           33 HILVCGM-KGTVAEFCKNIVLAGV-GSLTLMDDR   64 (324)
Q Consensus        33 ~VliiG~-g~lGsei~k~L~~~Gv-~~i~lvD~d   64 (324)
                      +|.|||+ |.+|+.+|..|+..|+ .++.|+|-.
T Consensus         2 KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~   35 (310)
T cd01337           2 KVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV   35 (310)
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC
Confidence            7999999 9999999999999997 579999985

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]

Probab=94.12  E-value=0.075  Score=46.63  Aligned_cols=117  Identities=12%  Similarity=0.091  Sum_probs=62.3

Q ss_pred             cEEEEcCchhHHHHHHHHHHh--CCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEee
Q 020565           33 HILVCGMKGTVAEFCKNIVLA--GVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEK  110 (324)
Q Consensus        33 ~VliiG~g~lGsei~k~L~~~--Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~  110 (324)
                      +|.|||||++|..+++.+-.-  ++.-+.+.|.+.-...++.+.+          +..+.    ..|-++-+.+.+-+..
T Consensus         2 ~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~----------~~~~~----s~ide~~~~~DlvVEa   67 (255)
T COG1712           2 KVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASV----------GRRCV----SDIDELIAEVDLVVEA   67 (255)
T ss_pred             eEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhc----------CCCcc----ccHHHHhhccceeeee
Confidence            689999999999998866533  2454555566443333332221          11111    1122222333332222


Q ss_pred             CCC---CCCchhhc-CCccEEEEcCC---CHHHHHHHHHHHHhccCCccEEEeeecCceE
Q 020565          111 GDL---SSLDGEFY-DKFDVVVVSCC---SVTTKKLINEKCRKLSKRVAFYTVDCRDSCG  163 (324)
Q Consensus       111 ~~~---~~~~~~~~-~~~diVi~~~~---~~~~~~~l~~~~~~~~~~ip~i~~~~~G~~g  163 (324)
                      ...   .++....+ .+.|++|.+..   ++..+.++-+.|+..+..+-+.++...|+.+
T Consensus        68 AS~~Av~e~~~~~L~~g~d~iV~SVGALad~~l~erl~~lak~~~~rv~~pSGAiGGlD~  127 (255)
T COG1712          68 ASPEAVREYVPKILKAGIDVIVMSVGALADEGLRERLRELAKCGGARVYLPSGAIGGLDA  127 (255)
T ss_pred             CCHHHHHHHhHHHHhcCCCEEEEechhccChHHHHHHHHHHhcCCcEEEecCccchhHHH
Confidence            221   22333444 45899988876   3445666777777744555566666555554

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=94.11  E-value=0.38  Score=36.86  Aligned_cols=78  Identities=19%  Similarity=0.199  Sum_probs=53.2

Q ss_pred             hcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEe
Q 020565           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVE  109 (324)
Q Consensus        30 ~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~  109 (324)
                      ++.+|+-+||| .|......+.+..-.+++-+|.                      ...-.+.+.+++.+....-+++..
T Consensus         1 p~~~vLDlGcG-~G~~~~~l~~~~~~~~v~gvD~----------------------s~~~~~~a~~~~~~~~~~~~i~~~   57 (112)
T PF12847_consen    1 PGGRVLDLGCG-TGRLSIALARLFPGARVVGVDI----------------------SPEMLEIARERAAEEGLSDRITFV   57 (112)
T ss_dssp             TTCEEEEETTT-TSHHHHHHHHHHTTSEEEEEES----------------------SHHHHHHHHHHHHHTTTTTTEEEE
T ss_pred             CCCEEEEEcCc-CCHHHHHHHhcCCCCEEEEEeC----------------------CHHHHHHHHHHHHhcCCCCCeEEE
Confidence            36789999998 4666665555444455888887                      333456666777555555677777


Q ss_pred             eCCCCCCchhhcCCccEEEEcC
Q 020565          110 KGDLSSLDGEFYDKFDVVVVSC  131 (324)
Q Consensus       110 ~~~~~~~~~~~~~~~diVi~~~  131 (324)
                      ..++ ....+...+||+|++..
T Consensus        58 ~~d~-~~~~~~~~~~D~v~~~~   78 (112)
T PF12847_consen   58 QGDA-EFDPDFLEPFDLVICSG   78 (112)
T ss_dssp             ESCC-HGGTTTSSCEEEEEECS
T ss_pred             ECcc-ccCcccCCCCCEEEECC
Confidence            7776 33455567899999877

...

>PRK07062 short chain dehydrogenase; Provisional

Probab=94.10  E-value=0.34  Score=43.38  Aligned_cols=81  Identities=15%  Similarity=0.155  Sum_probs=52.3

Q ss_pred             HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEe
Q 020565           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS  107 (324)
Q Consensus        29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~  107 (324)
                      ++++.++|.|+ +++|.++++.|+..|.. +.+++.+                      ..+.+.+.+.+.+..|..++.
T Consensus         6 l~~k~~lItGas~giG~~ia~~l~~~G~~-V~~~~r~----------------------~~~~~~~~~~~~~~~~~~~~~   62 (265)
T PRK07062          6 LEGRVAVVTGGSSGIGLATVELLLEAGAS-VAICGRD----------------------EERLASAEARLREKFPGARLL   62 (265)
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCCe-EEEEeCC----------------------HHHHHHHHHHHHhhCCCceEE
Confidence            56789999997 68999999999999985 7776652                      223344455566655555555


Q ss_pred             EeeCCCCCCc---------hhhcCCccEEEEcCC
Q 020565          108 VEKGDLSSLD---------GEFYDKFDVVVVSCC  132 (324)
Q Consensus       108 ~~~~~~~~~~---------~~~~~~~diVi~~~~  132 (324)
                      ....++.+..         .+.+...|++|.+..
T Consensus        63 ~~~~D~~~~~~v~~~~~~~~~~~g~id~li~~Ag   96 (265)
T PRK07062         63 AARCDVLDEADVAAFAAAVEARFGGVDMLVNNAG   96 (265)
T ss_pred             EEEecCCCHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence            5555554311         112345678777653

>cd00704 MDH Malate dehydrogenase

Probab=94.09  E-value=0.067  Score=50.09  Aligned_cols=33  Identities=21%  Similarity=0.160  Sum_probs=29.5

Q ss_pred             CcEEEEcC-chhHHHHHHHHHHhCCCc------EEEEcCC
Q 020565           32 SHILVCGM-KGTVAEFCKNIVLAGVGS------LTLMDDR   64 (324)
Q Consensus        32 ~~VliiG~-g~lGsei~k~L~~~Gv~~------i~lvD~d   64 (324)
                      .||+|+|+ |.+|+.++..|+..|+-+      ++|+|-.
T Consensus         1 ~KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~   40 (323)
T cd00704           1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIP   40 (323)
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecC
Confidence            37999999 999999999999999865      9999874

Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK08507 prephenate dehydrogenase; Validated

Probab=94.09  E-value=0.32  Score=44.30  Aligned_cols=31  Identities=13%  Similarity=0.033  Sum_probs=26.8

Q ss_pred             cEEEEcCchhHHHHHHHHHHhCCC-cEEEEcC
Q 020565           33 HILVCGMKGTVAEFCKNIVLAGVG-SLTLMDD   63 (324)
Q Consensus        33 ~VliiG~g~lGsei~k~L~~~Gv~-~i~lvD~   63 (324)
                      +|.|||+|.+|..++..|...|.. .++.+|.
T Consensus         2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~   33 (275)
T PRK08507          2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDH   33 (275)
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcC
Confidence            699999999999999999999973 5666665

>PRK07831 short chain dehydrogenase; Provisional

Probab=94.08  E-value=0.25  Score=44.22  Aligned_cols=35  Identities=17%  Similarity=0.209  Sum_probs=29.1

Q ss_pred             HHhcCcEEEEcC-c-hhHHHHHHHHHHhCCCcEEEEcC
Q 020565           28 RLSKSHILVCGM-K-GTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        28 ~l~~~~VliiG~-g-~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      .+++.+++|.|. | |+|..+++.|+..|.. ++++|.
T Consensus        14 ~~~~k~vlItG~sg~gIG~~ia~~l~~~G~~-V~~~~~   50 (262)
T PRK07831         14 LLAGKVVLVTAAAGTGIGSATARRALEEGAR-VVISDI   50 (262)
T ss_pred             ccCCCEEEEECCCcccHHHHHHHHHHHcCCE-EEEEeC
Confidence            456789999997 5 7999999999999986 777654

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=94.05  E-value=0.53  Score=45.00  Aligned_cols=32  Identities=16%  Similarity=0.347  Sum_probs=28.8

Q ss_pred             CcEEEEc-CchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565           32 SHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDDR   64 (324)
Q Consensus        32 ~~VliiG-~g~lGsei~k~L~~~Gv~~i~lvD~d   64 (324)
                      .+|+||| .|.+|..+++.|...|.. ++++|.+
T Consensus        99 ~~I~IiGG~GlmG~slA~~l~~~G~~-V~~~d~~  131 (374)
T PRK11199         99 RPVVIVGGKGQLGRLFAKMLTLSGYQ-VRILEQD  131 (374)
T ss_pred             ceEEEEcCCChhhHHHHHHHHHCCCe-EEEeCCC
Confidence            6799999 999999999999999965 8999864

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=94.03  E-value=1.8  Score=33.40  Aligned_cols=92  Identities=10%  Similarity=0.093  Sum_probs=51.7

Q ss_pred             cCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEee
Q 020565           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEK  110 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~  110 (324)
                      ..+|+-+|||. |.-....+...+-.+++-+|.                      .....+.+.+.+++..- -+++...
T Consensus        20 ~~~vldlG~G~-G~~~~~l~~~~~~~~v~~vD~----------------------s~~~~~~a~~~~~~~~~-~~~~~~~   75 (124)
T TIGR02469        20 GDVLWDIGAGS-GSITIEAARLVPNGRVYAIER----------------------NPEALRLIERNARRFGV-SNIVIVE   75 (124)
T ss_pred             CCEEEEeCCCC-CHHHHHHHHHCCCceEEEEcC----------------------CHHHHHHHHHHHHHhCC-CceEEEe
Confidence            56899999975 776666655555577888885                      33445555555555431 1344443


Q ss_pred             CCCCCCchhhcCCccEEEEcCCCHHHHHHHHHHHHh
Q 020565          111 GDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRK  146 (324)
Q Consensus       111 ~~~~~~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~  146 (324)
                      .+...........||+|+...........+....+.
T Consensus        76 ~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~  111 (124)
T TIGR02469        76 GDAPEALEDSLPEPDRVFIGGSGGLLQEILEAIWRR  111 (124)
T ss_pred             ccccccChhhcCCCCEEEECCcchhHHHHHHHHHHH
Confidence            333221122335899999876433333344444444

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PLN02780 ketoreductase/ oxidoreductase

Probab=94.02  E-value=0.28  Score=45.81  Aligned_cols=61  Identities=20%  Similarity=0.215  Sum_probs=43.0

Q ss_pred             hcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeE
Q 020565           30 SKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV  108 (324)
Q Consensus        30 ~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~  108 (324)
                      .++.++|.|+ ||+|.++++.|+..|.. +.+++.                      ...+.+.+++.+++..+..++..
T Consensus        52 ~g~~~lITGAs~GIG~alA~~La~~G~~-Vil~~R----------------------~~~~l~~~~~~l~~~~~~~~~~~  108 (320)
T PLN02780         52 YGSWALVTGPTDGIGKGFAFQLARKGLN-LVLVAR----------------------NPDKLKDVSDSIQSKYSKTQIKT  108 (320)
T ss_pred             cCCEEEEeCCCcHHHHHHHHHHHHCCCC-EEEEEC----------------------CHHHHHHHHHHHHHHCCCcEEEE
Confidence            4688999996 78999999999999984 877765                      23345556666766665555544


Q ss_pred             eeCCC
Q 020565          109 EKGDL  113 (324)
Q Consensus       109 ~~~~~  113 (324)
                      ...++
T Consensus       109 ~~~Dl  113 (320)
T PLN02780        109 VVVDF  113 (320)
T ss_pred             EEEEC
Confidence            43333

>TIGR00465 ilvC ketol-acid reductoisomerase

Probab=94.02  E-value=0.36  Score=44.99  Aligned_cols=33  Identities=12%  Similarity=0.104  Sum_probs=28.1

Q ss_pred             HhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEc
Q 020565           29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMD   62 (324)
Q Consensus        29 l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD   62 (324)
                      |++++|.|||+|.+|..++++|..+|+. +++.+
T Consensus         1 l~~kkIgiIG~G~mG~AiA~~L~~sG~~-Viv~~   33 (314)
T TIGR00465         1 LKGKTVAIIGYGSQGHAQALNLRDSGLN-VIVGL   33 (314)
T ss_pred             CCcCEEEEEeEcHHHHHHHHHHHHCCCe-EEEEE
Confidence            5678999999999999999999999984 44433

This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway

>PLN00106 malate dehydrogenase

Probab=94.02  E-value=0.14  Score=48.01  Aligned_cols=36  Identities=17%  Similarity=0.135  Sum_probs=31.5

Q ss_pred             hcCcEEEEcC-chhHHHHHHHHHHhCC-CcEEEEcCCc
Q 020565           30 SKSHILVCGM-KGTVAEFCKNIVLAGV-GSLTLMDDRV   65 (324)
Q Consensus        30 ~~~~VliiG~-g~lGsei~k~L~~~Gv-~~i~lvD~d~   65 (324)
                      ...||+|+|+ |.+|+.++..|+..|+ +++.|+|-+.
T Consensus        17 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~   54 (323)
T PLN00106         17 PGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIAN   54 (323)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCC
Confidence            4568999999 9999999999999888 4699999754

>PRK13302 putative L-aspartate dehydrogenase; Provisional

Probab=94.00  E-value=0.39  Score=43.79  Aligned_cols=34  Identities=6%  Similarity=0.126  Sum_probs=25.7

Q ss_pred             hcCcEEEEcCchhHHHHHHHHHHh--CCCcEEEEcC
Q 020565           30 SKSHILVCGMKGTVAEFCKNIVLA--GVGSLTLMDD   63 (324)
Q Consensus        30 ~~~~VliiG~g~lGsei~k~L~~~--Gv~~i~lvD~   63 (324)
                      +..||.|||+|.+|..++++|...  |+.-..++|.
T Consensus         5 ~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr   40 (271)
T PRK13302          5 PELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVR   40 (271)
T ss_pred             CeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECC
Confidence            456899999999999999999864  5432235565

>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase

Probab=94.00  E-value=0.69  Score=43.07  Aligned_cols=35  Identities=11%  Similarity=0.161  Sum_probs=28.8

Q ss_pred             HhcCcEEEEcC-chhHHHHHHHHHHhC-CCcEEEEcC
Q 020565           29 LSKSHILVCGM-KGTVAEFCKNIVLAG-VGSLTLMDD   63 (324)
Q Consensus        29 l~~~~VliiG~-g~lGsei~k~L~~~G-v~~i~lvD~   63 (324)
                      +++++|+|.|. |++|+.+++.|+..| ..+++++|.
T Consensus         2 ~~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r   38 (324)
T TIGR03589         2 FNNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSR   38 (324)
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcC
Confidence            45678999996 789999999999987 446887775

This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.

>TIGR01771 L-LDH-NAD L-lactate dehydrogenase

Probab=93.99  E-value=0.16  Score=47.08  Aligned_cols=71  Identities=17%  Similarity=0.176  Sum_probs=48.7

Q ss_pred             EEcCchhHHHHHHHHHHhCCC-cEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCC--eEeEeeCC
Q 020565           36 VCGMKGTVAEFCKNIVLAGVG-SLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMV--RVSVEKGD  112 (324)
Q Consensus        36 iiG~g~lGsei~k~L~~~Gv~-~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v--~v~~~~~~  112 (324)
                      |||+|.+|+.++..|+..|+. +|.|+|-                      .+.|++..+.-|+...+..  .+....  
T Consensus         1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di----------------------~~~~~~g~a~Dl~~~~~~~~~~~~i~~--   56 (299)
T TIGR01771         1 IIGAGNVGSSTAFALLNQGIADEIVLIDI----------------------NKDKAEGEAMDLQHAASFLPTPKKIRS--   56 (299)
T ss_pred             CCCcCHHHHHHHHHHHhcCCCCEEEEEeC----------------------CCChhhHHHHHHHHhhcccCCCeEEec--
Confidence            689999999999999999984 6999876                      3334555555566554322  122221  


Q ss_pred             CCCCchhhcCCccEEEEcCCC
Q 020565          113 LSSLDGEFYDKFDVVVVSCCS  133 (324)
Q Consensus       113 ~~~~~~~~~~~~diVi~~~~~  133 (324)
                         ...+.++++|+||.+...
T Consensus        57 ---~~~~~~~daDivVitag~   74 (299)
T TIGR01771        57 ---GDYSDCKDADLVVITAGA   74 (299)
T ss_pred             ---CCHHHHCCCCEEEECCCC
Confidence               124678899999988753

This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.

>PTZ00325 malate dehydrogenase; Provisional

Probab=93.98  E-value=0.18  Score=47.10  Aligned_cols=35  Identities=20%  Similarity=0.105  Sum_probs=30.3

Q ss_pred             HhcCcEEEEcC-chhHHHHHHHHHHhCCC-cEEEEcC
Q 020565           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVG-SLTLMDD   63 (324)
Q Consensus        29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~-~i~lvD~   63 (324)
                      ++-.||.|+|+ |.+|+.++..|+..|.. ++.|+|-
T Consensus         6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di   42 (321)
T PTZ00325          6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDI   42 (321)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEec
Confidence            44569999999 99999999999987875 6999988

>PRK13529 malate dehydrogenase; Provisional

Probab=93.94  E-value=0.22  Score=49.64  Aligned_cols=132  Identities=12%  Similarity=0.079  Sum_probs=76.1

Q ss_pred             HHHhHHHHHhhhHHHH------------------HHHhcCcEEEEcCchhHHHHHHHHHH----hCC------CcEEEEc
Q 020565           11 TALYDRQIRVWGADAQ------------------RRLSKSHILVCGMKGTVAEFCKNIVL----AGV------GSLTLMD   62 (324)
Q Consensus        11 ~~ry~Rqi~l~g~~~q------------------~~l~~~~VliiG~g~lGsei~k~L~~----~Gv------~~i~lvD   62 (324)
                      ++||..++..|..+-|                  ++|++.+|++.|+|+.|.-+|+.|+.    .|+      ++|.++|
T Consensus       257 L~ryr~~i~~FnDDiQGTaaV~LAgll~A~r~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~Gl~~eeA~~~i~~vD  336 (563)
T PRK13529        257 LERYRDEICTFNDDIQGTGAVTLAGLLAALKITGEPLSDQRIVFLGAGSAGCGIADQIVAAMVREGLSEEEARKRFFMVD  336 (563)
T ss_pred             HHHhccCCCeeccccchHHHHHHHHHHHHHHHhCCChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEc
Confidence            4677777777644332                  58889999999999999999999997    599      5899999


Q ss_pred             CCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEeeCCCCCCchhhcCCc--cEEEEcCC--CHHHHH
Q 020565           63 DRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEFYDKF--DVVVVSCC--SVTTKK  138 (324)
Q Consensus        63 ~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~~~~~~~~~~~~~~~--diVi~~~~--~~~~~~  138 (324)
                      ..-+-.++-        .++   ...|..-+..    .++.-....  ........+.++..  |++|-++.  ..-+..
T Consensus       337 ~~GLl~~~r--------~~l---~~~k~~fa~~----~~~~~~~~~--~~~~~~L~e~v~~~kPtvLIG~S~~~g~Ft~e  399 (563)
T PRK13529        337 RQGLLTDDM--------PDL---LDFQKPYARK----REELADWDT--EGDVISLLEVVRNVKPTVLIGVSGQPGAFTEE  399 (563)
T ss_pred             CCCeEeCCC--------Ccc---hHHHHHHhhh----ccccccccc--ccCCCCHHHHHhccCCCEEEEecCCCCCCCHH
Confidence            864332211        112   2223322221    121100000  00011234555555  78876664  233445


Q ss_pred             HHHHHHHhccCCccEEEeeecCc
Q 020565          139 LINEKCRKLSKRVAFYTVDCRDS  161 (324)
Q Consensus       139 ~l~~~~~~~~~~ip~i~~~~~G~  161 (324)
                      .|...+..  ...|+|.+-+...
T Consensus       400 vv~~Ma~~--~erPIIFaLSNPt  420 (563)
T PRK13529        400 IVKEMAAH--CERPIIFPLSNPT  420 (563)
T ss_pred             HHHHHHhc--CCCCEEEECCCcC
Confidence            56666655  5557777665543

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=93.92  E-value=0.38  Score=45.05  Aligned_cols=34  Identities=12%  Similarity=0.166  Sum_probs=30.2

Q ss_pred             hcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        30 ~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      ...+|+|+|+|++|..++..+...|..++.++|.
T Consensus       169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~  202 (343)
T PRK09880        169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADV  202 (343)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeC
Confidence            5679999999999999999999999988887765

>PLN02206 UDP-glucuronate decarboxylase

Probab=93.89  E-value=0.42  Score=46.78  Aligned_cols=105  Identities=10%  Similarity=0.167  Sum_probs=62.2

Q ss_pred             HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEe
Q 020565           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS  107 (324)
Q Consensus        29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~  107 (324)
                      -+..+|+|.|. |-+|+.+++.|...|.. ++.+|......          .+.+           ...+  .++  .++
T Consensus       117 ~~~~kILVTGatGfIGs~Lv~~Ll~~G~~-V~~ld~~~~~~----------~~~~-----------~~~~--~~~--~~~  170 (442)
T PLN02206        117 RKGLRVVVTGGAGFVGSHLVDRLMARGDS-VIVVDNFFTGR----------KENV-----------MHHF--SNP--NFE  170 (442)
T ss_pred             cCCCEEEEECcccHHHHHHHHHHHHCcCE-EEEEeCCCccc----------hhhh-----------hhhc--cCC--ceE
Confidence            35678999995 78999999999999975 66666422110          0000           0000  122  233


Q ss_pred             EeeCCCCCCchhhcCCccEEEEcCC---------CHHH--------HHHHHHHHHhccCCccEEEeeecCceEE
Q 020565          108 VEKGDLSSLDGEFYDKFDVVVVSCC---------SVTT--------KKLINEKCRKLSKRVAFYTVDCRDSCGE  164 (324)
Q Consensus       108 ~~~~~~~~~~~~~~~~~diVi~~~~---------~~~~--------~~~l~~~~~~~~~~ip~i~~~~~G~~g~  164 (324)
                      ....++.   +..+.++|+||-+..         ++..        -..+-+.|++  .+++||.+++...||.
T Consensus       171 ~i~~D~~---~~~l~~~D~ViHlAa~~~~~~~~~~p~~~~~~Nv~gt~nLleaa~~--~g~r~V~~SS~~VYg~  239 (442)
T PLN02206        171 LIRHDVV---EPILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKR--VGARFLLTSTSEVYGD  239 (442)
T ss_pred             EEECCcc---ChhhcCCCEEEEeeeecchhhhhcCHHHHHHHHHHHHHHHHHHHHH--hCCEEEEECChHHhCC
Confidence            3333332   223457888886552         1111        1345678888  7789999998877763

>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.89  E-value=0.29  Score=48.61  Aligned_cols=35  Identities=23%  Similarity=0.315  Sum_probs=30.7

Q ss_pred             HhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565           29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (324)
Q Consensus        29 l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d   64 (324)
                      ++.++|+|+|.|+.|..+|+.|...|.. ++..|..
T Consensus         5 ~~~~~i~v~G~G~sG~s~a~~L~~~G~~-v~~~D~~   39 (498)
T PRK02006          5 LQGPMVLVLGLGESGLAMARWCARHGAR-LRVADTR   39 (498)
T ss_pred             cCCCEEEEEeecHhHHHHHHHHHHCCCE-EEEEcCC
Confidence            4567899999999999999999999984 8888863

>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase

Probab=93.89  E-value=0.19  Score=48.80  Aligned_cols=108  Identities=16%  Similarity=0.151  Sum_probs=70.3

Q ss_pred             cEEEEcCchhHH-HHHHHHHH----hCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEe
Q 020565           33 HILVCGMKGTVA-EFCKNIVL----AGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS  107 (324)
Q Consensus        33 ~VliiG~g~lGs-ei~k~L~~----~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~  107 (324)
                      ||.|||.||.-+ ++++-|+.    .++++|.|+|-|.  ++.+..               -...+.+.+++.++..+++
T Consensus         2 KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~Did~--~~rl~~---------------v~~~~~~~~~~~~~~~~v~   64 (419)
T cd05296           2 KLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDE--EEKLEI---------------VGALAKRMVKKAGLPIKVH   64 (419)
T ss_pred             EEEEECCchHhHHHHHHHHHhccccCCCCEEEEecCCh--HHHHHH---------------HHHHHHHHHHhhCCCeEEE
Confidence            789999999765 67777776    5678999999864  222111               2234555566677777776


Q ss_pred             EeeCCCCCCchhhcCCccEEEEcCC--CHHHHHHHHHHHHhccCCccEEEeeecCceEEEE
Q 020565          108 VEKGDLSSLDGEFYDKFDVVVVSCC--SVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIF  166 (324)
Q Consensus       108 ~~~~~~~~~~~~~~~~~diVi~~~~--~~~~~~~l~~~~~~~~~~ip~i~~~~~G~~g~v~  166 (324)
                      ....     ..+.++++|+||.+..  ..+.+..-.++..+  +|+  +-..+.|.-|.++
T Consensus        65 ~t~d-----~~~al~gadfVi~~~~vg~~~~r~~de~i~~~--~Gi--~gqET~G~GG~~~  116 (419)
T cd05296          65 LTTD-----RREALEGADFVFTQIRVGGLEARALDERIPLK--HGV--IGQETTGAGGFAK  116 (419)
T ss_pred             EeCC-----HHHHhCCCCEEEEEEeeCCcchhhhhhhhHHH--cCC--ccccCCCcchHHH
Confidence            6432     3677889999998864  44445445556666  655  3466677666443

Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein

>PRK15059 tartronate semialdehyde reductase; Provisional

Probab=93.88  E-value=0.28  Score=45.17  Aligned_cols=111  Identities=11%  Similarity=0.036  Sum_probs=65.8

Q ss_pred             cEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEeeCC
Q 020565           33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGD  112 (324)
Q Consensus        33 ~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~~~  112 (324)
                      +|.+||+|-+|..++.+|...|. +++++|.+. ..+.     +.   ..   |-..+....+..+  ..++-+......
T Consensus         2 ~Ig~IGlG~MG~~ma~~L~~~G~-~v~v~~~~~-~~~~-----~~---~~---g~~~~~s~~~~~~--~advVi~~v~~~   66 (292)
T PRK15059          2 KLGFIGLGIMGTPMAINLARAGH-QLHVTTIGP-VADE-----LL---SL---GAVSVETARQVTE--ASDIIFIMVPDT   66 (292)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCC-eEEEEeCCH-hHHH-----HH---Hc---CCeecCCHHHHHh--cCCEEEEeCCCh
Confidence            59999999999999999999997 578887653 1111     11   11   3322222222222  223333333221


Q ss_pred             --CCCC------chhhcCCccEEEEcC-CCHHHHHHHHHHHHhccCCccEEEeeecC
Q 020565          113 --LSSL------DGEFYDKFDVVVVSC-CSVTTKKLINEKCRKLSKRVAFYTVDCRD  160 (324)
Q Consensus       113 --~~~~------~~~~~~~~diVi~~~-~~~~~~~~l~~~~~~~~~~ip~i~~~~~G  160 (324)
                        ..+.      ....+..-.+||+++ .++.+.+.+.+.+.+  +++.|+.+-..|
T Consensus        67 ~~v~~v~~~~~g~~~~~~~g~ivvd~sT~~p~~~~~~~~~~~~--~G~~~vdaPVsG  121 (292)
T PRK15059         67 PQVEEVLFGENGCTKASLKGKTIVDMSSISPIETKRFARQVNE--LGGDYLDAPVSG  121 (292)
T ss_pred             HHHHHHHcCCcchhccCCCCCEEEECCCCCHHHHHHHHHHHHH--cCCCEEEecCCC
Confidence              0000      011123335777665 577788889999999  899999887666

>PRK05875 short chain dehydrogenase; Provisional

Probab=93.87  E-value=0.29  Score=44.13  Aligned_cols=34  Identities=21%  Similarity=0.338  Sum_probs=29.7

Q ss_pred             HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      +++++++|.|+ |++|..+++.|+..|. ++.+++.
T Consensus         5 ~~~k~vlItGasg~IG~~la~~l~~~G~-~V~~~~r   39 (276)
T PRK05875          5 FQDRTYLVTGGGSGIGKGVAAGLVAAGA-AVMIVGR   39 (276)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC-eEEEEeC
Confidence            67789999997 7999999999999998 4777765

>PTZ00431 pyrroline carboxylate reductase; Provisional

Probab=93.83  E-value=0.34  Score=43.83  Aligned_cols=34  Identities=6%  Similarity=0.055  Sum_probs=26.8

Q ss_pred             hcCcEEEEcCchhHHHHHHHHHHhCC---CcEEEEcC
Q 020565           30 SKSHILVCGMKGTVAEFCKNIVLAGV---GSLTLMDD   63 (324)
Q Consensus        30 ~~~~VliiG~g~lGsei~k~L~~~Gv---~~i~lvD~   63 (324)
                      .+.+|.|||+|.+|+.+++.|...|.   .++.+.|.
T Consensus         2 ~~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~   38 (260)
T PTZ00431          2 ENIRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTP   38 (260)
T ss_pred             CCCEEEEECccHHHHHHHHHHHhCCCCCcceEEEECC
Confidence            34689999999999999999999874   22555544

>PRK07478 short chain dehydrogenase; Provisional

Probab=93.82  E-value=0.2  Score=44.56  Aligned_cols=34  Identities=15%  Similarity=0.169  Sum_probs=28.8

Q ss_pred             HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      +++++++|.|+ ||+|.++++.|+..|.. +.+++.
T Consensus         4 ~~~k~~lItGas~giG~~ia~~l~~~G~~-v~~~~r   38 (254)
T PRK07478          4 LNGKVAIITGASSGIGRAAAKLFAREGAK-VVVGAR   38 (254)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCCE-EEEEeC
Confidence            56788999996 78999999999999985 777665

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=93.82  E-value=0.41  Score=44.20  Aligned_cols=34  Identities=12%  Similarity=0.008  Sum_probs=29.2

Q ss_pred             hcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        30 ~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      +..+|+|+|+|++|...+..+...|...+.++|.
T Consensus       144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~  177 (308)
T TIGR01202       144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWET  177 (308)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCC
Confidence            5568999999999999998888899987777654

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.82  E-value=0.33  Score=47.29  Aligned_cols=35  Identities=20%  Similarity=0.278  Sum_probs=30.6

Q ss_pred             HhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565           29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (324)
Q Consensus        29 l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d   64 (324)
                      +++++|+|+|.|++|..+++.|+..|.. +++.|.+
T Consensus         3 ~~~k~v~v~G~g~~G~s~a~~l~~~G~~-V~~~d~~   37 (447)
T PRK02472          3 YQNKKVLVLGLAKSGYAAAKLLHKLGAN-VTVNDGK   37 (447)
T ss_pred             cCCCEEEEEeeCHHHHHHHHHHHHCCCE-EEEEcCC
Confidence            4578899999999999999999999975 8887753

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=93.81  E-value=0.18  Score=44.51  Aligned_cols=35  Identities=17%  Similarity=0.304  Sum_probs=30.3

Q ss_pred             HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCC
Q 020565           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDR   64 (324)
Q Consensus        29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d   64 (324)
                      +++++|+|.|+ |++|.++++.|+..|.. +++++..
T Consensus         3 ~~~~~vlItGasg~iG~~l~~~l~~~G~~-V~~~~r~   38 (251)
T PRK07231          3 LEGKVAIVTGASSGIGEGIARRFAAEGAR-VVVTDRN   38 (251)
T ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCC
Confidence            56789999996 78999999999999986 8887763

>TIGR00065 ftsZ cell division protein FtsZ

Probab=93.78  E-value=0.35  Score=45.75  Aligned_cols=43  Identities=16%  Similarity=0.242  Sum_probs=33.9

Q ss_pred             HHHHHHhcCcEEEEcCchhHHHHHHHHHHhCCCcE--EEEcCCcc
Q 020565           24 DAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSL--TLMDDRVV   66 (324)
Q Consensus        24 ~~q~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i--~lvD~d~v   66 (324)
                      +.|+--.+.+|.|||+||-|+.++.+|.+.|+..+  ..+|.|.-
T Consensus        10 ~~~~~~~~~~i~viGvGg~G~n~v~~l~~~~~~~~~~iainTD~~   54 (349)
T TIGR00065        10 ELIQPSNKAKIKVIGVGGGGNNTVNRMLEEGVEGVEFIAINTDAQ   54 (349)
T ss_pred             hhcCcccCCeEEEEEeCCcHHHHHHHHHHcCCCceEEEEEECCHH
Confidence            34444456789999999999999999999998644  44788763

This family consists of cell division protein FtsZ, a GTPase found in bacteria, the chloroplast of plants, and in archaebacteria. Structurally similar to tubulin, FtsZ undergoes GTP-dependent polymerization into filaments that form a cytoskeleton involved in septum synthesis.

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.77  E-value=0.35  Score=47.22  Aligned_cols=34  Identities=24%  Similarity=0.369  Sum_probs=30.0

Q ss_pred             HhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565           29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        29 l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      +..++|+|+|.|+.|..+++.|...|.. +++.|.
T Consensus         3 ~~~~~~~v~G~g~~G~~~a~~l~~~g~~-v~~~d~   36 (445)
T PRK04308          3 FQNKKILVAGLGGTGISMIAYLRKNGAE-VAAYDA   36 (445)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCE-EEEEeC
Confidence            4567999999999999999999999975 888875

>TIGR00036 dapB dihydrodipicolinate reductase

Probab=93.77  E-value=0.41  Score=43.52  Aligned_cols=30  Identities=17%  Similarity=0.265  Sum_probs=24.4

Q ss_pred             cEEEEc-CchhHHHHHHHHHH-hCCCcEEEEc
Q 020565           33 HILVCG-MKGTVAEFCKNIVL-AGVGSLTLMD   62 (324)
Q Consensus        33 ~VliiG-~g~lGsei~k~L~~-~Gv~~i~lvD   62 (324)
                      ||.|+| +|.+|..+++.+.. .++.-+-++|
T Consensus         3 kV~IiGa~G~MG~~i~~~i~~~~~~elvav~d   34 (266)
T TIGR00036         3 KVAVAGAAGRMGRELIKAALAAEGLQLVAAFE   34 (266)
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCCEEEEEEe
Confidence            799999 59999999999985 5666555566

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=93.76  E-value=0.43  Score=47.46  Aligned_cols=33  Identities=24%  Similarity=0.185  Sum_probs=29.4

Q ss_pred             cCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d   64 (324)
                      -++|.|||+|..|+.+|.+|+.+|.. ++++|.+
T Consensus         5 ~~kV~VIGaG~MG~gIA~~la~aG~~-V~l~d~~   37 (503)
T TIGR02279         5 VVTVAVIGAGAMGAGIAQVAASAGHQ-VLLYDIR   37 (503)
T ss_pred             ccEEEEECcCHHHHHHHHHHHhCCCe-EEEEeCC
Confidence            35799999999999999999999986 8888863

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=93.75  E-value=0.18  Score=47.64  Aligned_cols=93  Identities=16%  Similarity=0.021  Sum_probs=59.0

Q ss_pred             cCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEee
Q 020565           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEK  110 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~  110 (324)
                      ..+|+|+|+|++|--.+..+.+.|...+.++|.+                      ..|.+.+++...    ...+....
T Consensus       169 ~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~----------------------~~Rl~~A~~~~g----~~~~~~~~  222 (350)
T COG1063         169 GGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRS----------------------PERLELAKEAGG----ADVVVNPS  222 (350)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCC----------------------HHHHHHHHHhCC----CeEeecCc
Confidence            3379999999999999999999999999999872                      223333322111    10110000


Q ss_pred             CC-CCCCchhhc--CCccEEEEcCCCHHHHHHHHHHHHhccCCc
Q 020565          111 GD-LSSLDGEFY--DKFDVVVVSCCSVTTKKLINEKCRKLSKRV  151 (324)
Q Consensus       111 ~~-~~~~~~~~~--~~~diVi~~~~~~~~~~~l~~~~~~~~~~i  151 (324)
                      .+ ......+.-  ..+|+||.|+.+..+.....++++.  .+.
T Consensus       223 ~~~~~~~~~~~t~g~g~D~vie~~G~~~~~~~ai~~~r~--gG~  264 (350)
T COG1063         223 EDDAGAEILELTGGRGADVVIEAVGSPPALDQALEALRP--GGT  264 (350)
T ss_pred             cccHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhcC--CCE
Confidence            10 000011111  3699999999988877778888877  655

>PLN03075 nicotianamine synthase; Provisional

Probab=93.72  E-value=1.4  Score=40.68  Aligned_cols=112  Identities=10%  Similarity=0.073  Sum_probs=63.7

Q ss_pred             hcCcEEEEcCchhHHHHHHHHHHhCC-CcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHh---hCCCCe
Q 020565           30 SKSHILVCGMKGTVAEFCKNIVLAGV-GSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKD---FNPMVR  105 (324)
Q Consensus        30 ~~~~VliiG~g~lGsei~k~L~~~Gv-~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~---lnp~v~  105 (324)
                      ..++|+-||||..|-...-.++..+- ++++=+|.+.                      .-.+.+++.+++   +.+.  
T Consensus       123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~----------------------~ai~~Ar~~~~~~~gL~~r--  178 (296)
T PLN03075        123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDP----------------------SANDVARRLVSSDPDLSKR--  178 (296)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCH----------------------HHHHHHHHHhhhccCccCC--
Confidence            78999999999876655555544443 3566666522                      222333333322   2223  


Q ss_pred             EeEeeCCCCCCchhhcCCccEEEEcC----CCHHHHHHHHHHHHhccCCccEEEeeecCceEEEE
Q 020565          106 VSVEKGDLSSLDGEFYDKFDVVVVSC----CSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIF  166 (324)
Q Consensus       106 v~~~~~~~~~~~~~~~~~~diVi~~~----~~~~~~~~l~~~~~~~~~~ip~i~~~~~G~~g~v~  166 (324)
                      ++....+..+.. ..+.+||+|++..    +...-...+..+.+.+..|=.++.....|..+..|
T Consensus       179 V~F~~~Da~~~~-~~l~~FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~~~G~r~~LY  242 (296)
T PLN03075        179 MFFHTADVMDVT-ESLKEYDVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRSAHGARAFLY  242 (296)
T ss_pred             cEEEECchhhcc-cccCCcCEEEEecccccccccHHHHHHHHHHhcCCCcEEEEecccchHhhcC
Confidence            444444433321 1256899998774    22334455666666554554566665688888766

>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent

Probab=93.69  E-value=0.16  Score=47.32  Aligned_cols=33  Identities=21%  Similarity=0.177  Sum_probs=29.5

Q ss_pred             cEEEEcC-chhHHHHHHHHHHhCC-CcEEEEcCCc
Q 020565           33 HILVCGM-KGTVAEFCKNIVLAGV-GSLTLMDDRV   65 (324)
Q Consensus        33 ~VliiG~-g~lGsei~k~L~~~Gv-~~i~lvD~d~   65 (324)
                      ||.|||+ |.+|+.+|..|+..|+ .++.|+|-..
T Consensus         1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~   35 (312)
T TIGR01772         1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAG   35 (312)
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCC
Confidence            6899999 9999999999999998 5699999754

Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.

>PRK13018 cell division protein FtsZ; Provisional

Probab=93.67  E-value=0.44  Score=45.50  Aligned_cols=38  Identities=13%  Similarity=0.253  Sum_probs=32.6

Q ss_pred             HHhcCcEEEEcCchhHHHHHHHHHHhCCC--cEEEEcCCc
Q 020565           28 RLSKSHILVCGMKGTVAEFCKNIVLAGVG--SLTLMDDRV   65 (324)
Q Consensus        28 ~l~~~~VliiG~g~lGsei~k~L~~~Gv~--~i~lvD~d~   65 (324)
                      ...+.+|.|||+||-|+.++.+|...|+.  .+..++.|.
T Consensus        25 ~~~~~~I~ViGvGGaG~N~v~~m~~~~~~~v~~iaiNTD~   64 (378)
T PRK13018         25 DFGNPKIVVVGCGGAGNNTINRLYEIGIEGAETIAINTDA   64 (378)
T ss_pred             ccCCCeEEEEEeCCcHHHHHHHHHHcCCCCceEEEEECCH
Confidence            45678999999999999999999999976  457778877

>PRK00811 spermidine synthase; Provisional

Probab=93.66  E-value=0.33  Score=44.58  Aligned_cols=52  Identities=13%  Similarity=0.167  Sum_probs=33.3

Q ss_pred             HHHHHhHHHHHhhhHHHHHHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565            9 QETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus         9 ~e~~ry~Rqi~l~g~~~q~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      .+.-.|.+.+.-...-...  ...+||++|+|+ |......|...++.+++.||-
T Consensus        57 ~de~~Y~e~l~h~~~~~~~--~p~~VL~iG~G~-G~~~~~~l~~~~~~~V~~VEi  108 (283)
T PRK00811         57 RDEFIYHEMMTHVPLFAHP--NPKRVLIIGGGD-GGTLREVLKHPSVEKITLVEI  108 (283)
T ss_pred             cchhhHHHHhhhHHHhhCC--CCCEEEEEecCc-hHHHHHHHcCCCCCEEEEEeC
Confidence            3335676655443332221  457899999984 555555555568999999987

>PRK09330 cell division protein FtsZ; Validated

Probab=93.65  E-value=0.5  Score=45.19  Aligned_cols=37  Identities=14%  Similarity=0.201  Sum_probs=30.7

Q ss_pred             HhcCcEEEEcCchhHHHHHHHHHHhCCC--cEEEEcCCc
Q 020565           29 LSKSHILVCGMKGTVAEFCKNIVLAGVG--SLTLMDDRV   65 (324)
Q Consensus        29 l~~~~VliiG~g~lGsei~k~L~~~Gv~--~i~lvD~d~   65 (324)
                      ....+|.|||+||-|+.++.+|...|+.  .+..++.|.
T Consensus        11 ~~~~~IkViGvGG~G~Nav~~m~~~~~~~v~fia~NTD~   49 (384)
T PRK09330         11 NQGAVIKVIGVGGGGGNAVNRMIEEGIQGVEFIAANTDA   49 (384)
T ss_pred             ccCCeEEEEEECCcHHHHHHHHHHcCCCCceEEEEeCcH
Confidence            3567899999999999999999999976  455567765

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.58  E-value=0.5  Score=46.38  Aligned_cols=97  Identities=18%  Similarity=0.219  Sum_probs=58.7

Q ss_pred             HHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeE
Q 020565           27 RRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRV  106 (324)
Q Consensus        27 ~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v  106 (324)
                      ..+..++|+|+|.|..|..+++.|...|. .+++.|...-..             .        ....+.|++..  +.+
T Consensus        10 ~~~~~~~i~v~G~G~sG~a~a~~L~~~G~-~V~~~D~~~~~~-------------~--------~~~~~~l~~~g--i~~   65 (458)
T PRK01710         10 KFIKNKKVAVVGIGVSNIPLIKFLVKLGA-KVTAFDKKSEEE-------------L--------GEVSNELKELG--VKL   65 (458)
T ss_pred             hhhcCCeEEEEcccHHHHHHHHHHHHCCC-EEEEECCCCCcc-------------c--------hHHHHHHHhCC--CEE
Confidence            44667899999999999999999999997 488988633110             0        00112233322  232


Q ss_pred             eEeeCCCCCCchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEE
Q 020565          107 SVEKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYT  155 (324)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~  155 (324)
                      ..  ..   ...+.+.++|+||.+..=+... -+-..+++  .++|++.
T Consensus        66 ~~--~~---~~~~~~~~~dlVV~Spgi~~~~-p~~~~a~~--~~i~i~s  106 (458)
T PRK01710         66 VL--GE---NYLDKLDGFDVIFKTPSMRIDS-PELVKAKE--EGAYITS  106 (458)
T ss_pred             Ee--CC---CChHHhccCCEEEECCCCCCCc-hHHHHHHH--cCCcEEe
Confidence            21  11   1134457899999886422222 23445667  7888874

>TIGR00936 ahcY adenosylhomocysteinase

Probab=93.56  E-value=0.45  Score=45.92  Aligned_cols=36  Identities=8%  Similarity=0.058  Sum_probs=31.9

Q ss_pred             HhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCc
Q 020565           29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV   65 (324)
Q Consensus        29 l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~   65 (324)
                      +..++|+|+|+|.+|..+++.+...|.. ++++|.|.
T Consensus       193 l~Gk~VvViG~G~IG~~vA~~ak~~Ga~-ViV~d~dp  228 (406)
T TIGR00936       193 IAGKTVVVAGYGWCGKGIAMRARGMGAR-VIVTEVDP  228 (406)
T ss_pred             CCcCEEEEECCCHHHHHHHHHHhhCcCE-EEEEeCCh
Confidence            6788999999999999999999999985 88887644

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.53  E-value=0.4  Score=47.23  Aligned_cols=35  Identities=9%  Similarity=-0.091  Sum_probs=31.1

Q ss_pred             HhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565           29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (324)
Q Consensus        29 l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d   64 (324)
                      +++++|+|+|+|-.|..+++.|...|.. +++.|.+
T Consensus         6 ~~~~~v~v~G~G~sG~~~~~~l~~~g~~-v~~~d~~   40 (468)
T PRK04690          6 LEGRRVALWGWGREGRAAYRALRAHLPA-QALTLFC   40 (468)
T ss_pred             cCCCEEEEEccchhhHHHHHHHHHcCCE-EEEEcCC
Confidence            4678999999999999999999999987 7888864

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=93.51  E-value=0.18  Score=44.47  Aligned_cols=35  Identities=23%  Similarity=0.359  Sum_probs=30.2

Q ss_pred             HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCC
Q 020565           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDR   64 (324)
Q Consensus        29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d   64 (324)
                      |++.+++|.|+ |++|..+++.|+..|.. ++++|.+
T Consensus         3 ~~~~~~lItG~~g~iG~~~a~~l~~~G~~-vi~~~r~   38 (253)
T PRK08217          3 LKDKVIVITGGAQGLGRAMAEYLAQKGAK-LALIDLN   38 (253)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEeCC
Confidence            56789999997 99999999999999974 8887753

>PRK05442 malate dehydrogenase; Provisional

Probab=93.51  E-value=0.11  Score=48.60  Aligned_cols=32  Identities=16%  Similarity=0.080  Sum_probs=28.6

Q ss_pred             CcEEEEcC-chhHHHHHHHHHHhCCC------cEEEEcC
Q 020565           32 SHILVCGM-KGTVAEFCKNIVLAGVG------SLTLMDD   63 (324)
Q Consensus        32 ~~VliiG~-g~lGsei~k~L~~~Gv~------~i~lvD~   63 (324)
                      .||.|||+ |.+|+.++..|+..|+-      ++.|+|-
T Consensus         5 ~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi   43 (326)
T PRK05442          5 VRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEI   43 (326)
T ss_pred             cEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEec
Confidence            58999998 99999999999998884      5889886

>PLN02306 hydroxypyruvate reductase

Probab=93.50  E-value=0.29  Score=47.03  Aligned_cols=108  Identities=20%  Similarity=0.155  Sum_probs=63.5

Q ss_pred             HHHhcCcEEEEcCchhHHHHHHHHH-HhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCC-CC
Q 020565           27 RRLSKSHILVCGMKGTVAEFCKNIV-LAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNP-MV  104 (324)
Q Consensus        27 ~~l~~~~VliiG~g~lGsei~k~L~-~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp-~v  104 (324)
                      ..|..++|.|+|+|.+|.++|+.|. ..|.. +..+|...-.  ...+ +.   ...   |.        .++.... .+
T Consensus       161 ~~L~gktvGIiG~G~IG~~vA~~l~~~fGm~-V~~~d~~~~~--~~~~-~~---~~~---~~--------~l~~~~~~~~  222 (386)
T PLN02306        161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQST--RLEK-FV---TAY---GQ--------FLKANGEQPV  222 (386)
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHHHhcCCCE-EEEECCCCch--hhhh-hh---hhh---cc--------cccccccccc
Confidence            3589999999999999999999986 66874 7777763210  0000 00   000   10        0000000 01


Q ss_pred             eEeEeeCCCCCCchhhcCCccEEEEcC-CCHHHHHHHHHHH-HhccCCccEEEee
Q 020565          105 RVSVEKGDLSSLDGEFYDKFDVVVVSC-CSVTTKKLINEKC-RKLSKRVAFYTVD  157 (324)
Q Consensus       105 ~v~~~~~~~~~~~~~~~~~~diVi~~~-~~~~~~~~l~~~~-~~~~~~ip~i~~~  157 (324)
                      .+.     .....+++++.+|+|+.+. .+.+++..+|+.. ..++.+.-||+++
T Consensus       223 ~~~-----~~~~L~ell~~sDiV~lh~Plt~~T~~lin~~~l~~MK~ga~lIN~a  272 (386)
T PLN02306        223 TWK-----RASSMEEVLREADVISLHPVLDKTTYHLINKERLALMKKEAVLVNAS  272 (386)
T ss_pred             ccc-----ccCCHHHHHhhCCEEEEeCCCChhhhhhcCHHHHHhCCCCeEEEECC
Confidence            111     0123477888999998854 5778888888754 3334566677776

>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional

Probab=93.49  E-value=0.76  Score=43.06  Aligned_cols=31  Identities=19%  Similarity=0.168  Sum_probs=25.1

Q ss_pred             CcEEEEcC-chhHHHHHHHHHHh-CCCcEEEEcC
Q 020565           32 SHILVCGM-KGTVAEFCKNIVLA-GVGSLTLMDD   63 (324)
Q Consensus        32 ~~VliiG~-g~lGsei~k~L~~~-Gv~~i~lvD~   63 (324)
                      .+|+|.|+ |-+|+.+++.|... |. +++.+|.
T Consensus         2 ~~ilVtGatGfiGs~l~~~L~~~~~~-~V~~~~r   34 (347)
T PRK11908          2 KKVLILGVNGFIGHHLSKRILETTDW-EVYGMDM   34 (347)
T ss_pred             cEEEEECCCcHHHHHHHHHHHhCCCC-eEEEEeC
Confidence            36999997 88999999999986 44 5777764

>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

Probab=93.48  E-value=0.17  Score=44.65  Aligned_cols=35  Identities=20%  Similarity=0.290  Sum_probs=29.2

Q ss_pred             HHhcCcEEEEc-CchhHHHHHHHHHHhCCCcEEEEcC
Q 020565           28 RLSKSHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        28 ~l~~~~VliiG-~g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      .+++++|+|.| .|++|..+++.|+..|.. +++++.
T Consensus         3 ~~~~~~ilItGasg~iG~~l~~~l~~~g~~-V~~~~r   38 (251)
T PRK12826          3 DLEGRVALVTGAARGIGRAIAVRLAADGAE-VIVVDI   38 (251)
T ss_pred             CCCCCEEEEcCCCCcHHHHHHHHHHHCCCE-EEEEeC
Confidence            35678899999 588999999999999974 777665

>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase

Probab=93.45  E-value=0.68  Score=43.44  Aligned_cols=35  Identities=11%  Similarity=-0.034  Sum_probs=28.9

Q ss_pred             HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCC
Q 020565           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDR   64 (324)
Q Consensus        29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d   64 (324)
                      +++++|+|.|. |.+|+.+++.|+..|.. ++.+|.+
T Consensus         2 ~~~k~ilItGatG~IG~~l~~~L~~~G~~-V~~~~r~   37 (349)
T TIGR02622         2 WQGKKVLVTGHTGFKGSWLSLWLLELGAE-VYGYSLD   37 (349)
T ss_pred             cCCCEEEEECCCChhHHHHHHHHHHCCCE-EEEEeCC
Confidence            45789999996 77999999999999964 7776653

Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.

>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1

Probab=93.44  E-value=0.28  Score=43.52  Aligned_cols=38  Identities=13%  Similarity=0.187  Sum_probs=33.3

Q ss_pred             HHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565           27 RRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (324)
Q Consensus        27 ~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d   64 (324)
                      ..|+..+|+|.|.|.+|..+++.|...|..-+.+.|..
T Consensus        27 ~~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~   64 (227)
T cd01076          27 IGLAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSD   64 (227)
T ss_pred             CCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence            45889999999999999999999999998866687763

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids

>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.37  E-value=0.42  Score=46.71  Aligned_cols=33  Identities=21%  Similarity=0.333  Sum_probs=29.0

Q ss_pred             hcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        30 ~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      .+..|+|+|.|+.|..+|+.|...|.. ++..|.
T Consensus         5 ~~~~~~v~G~G~sG~s~a~~L~~~G~~-v~~~D~   37 (448)
T PRK03803          5 SDGLHIVVGLGKTGLSVVRFLARQGIP-FAVMDS   37 (448)
T ss_pred             cCCeEEEEeecHhHHHHHHHHHhCCCe-EEEEeC
Confidence            356799999999999999999999985 888885

>PLN03129 NADP-dependent malic enzyme; Provisional

Probab=93.37  E-value=0.29  Score=48.90  Aligned_cols=124  Identities=15%  Similarity=0.127  Sum_probs=75.4

Q ss_pred             HHHhHHHHHhhhHHHH------------------HHHhcCcEEEEcCchhHHHHHHHHHH-----hCC------CcEEEE
Q 020565           11 TALYDRQIRVWGADAQ------------------RRLSKSHILVCGMKGTVAEFCKNIVL-----AGV------GSLTLM   61 (324)
Q Consensus        11 ~~ry~Rqi~l~g~~~q------------------~~l~~~~VliiG~g~lGsei~k~L~~-----~Gv------~~i~lv   61 (324)
                      ++||..++..|..+-|                  ++|++.+|+++|+|+.|.-+++.|+.     .|+      ++|.++
T Consensus       283 L~ryr~~i~~FnDDiQGTaaV~lAgll~A~r~~g~~l~d~riv~~GAGsAgigia~ll~~~~~~~~Gls~eeA~~~i~~v  362 (581)
T PLN03129        283 LQRYRTTHLCFNDDIQGTAAVALAGLLAALRATGGDLADQRILFAGAGEAGTGIAELIALAMSRQTGISEEEARKRIWLV  362 (581)
T ss_pred             HHHhccCCCEeccccchHHHHHHHHHHHHHHHhCCchhhceEEEECCCHHHHHHHHHHHHHHHhhcCCChhhhcCcEEEE
Confidence            4667656666644322                  68899999999999999999999998     477      689999


Q ss_pred             cCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEeeCCCCCCchhhcCC--ccEEEEcCC--CHHHH
Q 020565           62 DDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEFYDK--FDVVVVSCC--SVTTK  137 (324)
Q Consensus        62 D~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~~~~~~~~~~~~~~--~diVi~~~~--~~~~~  137 (324)
                      |.+-+-..+-.       +++   ...|..-+..    ..+          . ....+.++.  .|++|-++.  +.-+.
T Consensus       363 D~~GLi~~~r~-------~~l---~~~k~~fa~~----~~~----------~-~~L~e~v~~vkptvLIG~S~~~g~Ft~  417 (581)
T PLN03129        363 DSKGLVTKSRK-------DSL---QPFKKPFAHD----HEP----------G-ASLLEAVKAIKPTVLIGLSGVGGTFTK  417 (581)
T ss_pred             cCCCeEeCCCC-------ccC---hHHHHHHHhh----ccc----------C-CCHHHHHhccCCCEEEEecCCCCCCCH
Confidence            98643322211       112   2333333222    111          0 123445555  688877664  33345


Q ss_pred             HHHHHHHHhccCCccEEEeeecCc
Q 020565          138 KLINEKCRKLSKRVAFYTVDCRDS  161 (324)
Q Consensus       138 ~~l~~~~~~~~~~ip~i~~~~~G~  161 (324)
                      ..|...+..  ...|+|.+-+...
T Consensus       418 evi~~Ma~~--~~rPIIFaLSNPt  439 (581)
T PLN03129        418 EVLEAMASL--NERPIIFALSNPT  439 (581)
T ss_pred             HHHHHHHhc--CCCCEEEECCCCC
Confidence            566666655  5668877765543

>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase

Probab=93.37  E-value=0.82  Score=41.69  Aligned_cols=31  Identities=23%  Similarity=0.281  Sum_probs=25.1

Q ss_pred             cEEEEcC-chhHHHHHHHHHHhCC-CcEEEEcC
Q 020565           33 HILVCGM-KGTVAEFCKNIVLAGV-GSLTLMDD   63 (324)
Q Consensus        33 ~VliiG~-g~lGsei~k~L~~~Gv-~~i~lvD~   63 (324)
                      +|+|.|. |.+|..+++.|...|- .+++++|.
T Consensus         1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~~   33 (317)
T TIGR01181         1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDK   33 (317)
T ss_pred             CEEEEcCCchHHHHHHHHHHHhCCCCEEEEecC
Confidence            5899996 8899999999999883 35777654

This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=93.33  E-value=0.59  Score=45.33  Aligned_cols=40  Identities=10%  Similarity=-0.061  Sum_probs=32.6

Q ss_pred             CcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCC
Q 020565           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWS   72 (324)
Q Consensus        32 ~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~   72 (324)
                      .+|.|||+|-+|..+|.+|+..|.. ++.+|.+.-..+.++
T Consensus         4 ~kI~VIGlG~~G~~~A~~La~~G~~-V~~~D~~~~~v~~l~   43 (415)
T PRK11064          4 ETISVIGLGYIGLPTAAAFASRQKQ-VIGVDINQHAVDTIN   43 (415)
T ss_pred             cEEEEECcchhhHHHHHHHHhCCCE-EEEEeCCHHHHHHHH
Confidence            6799999999999999999999964 888887554444443

>PRK08374 homoserine dehydrogenase; Provisional

Probab=93.29  E-value=0.67  Score=43.65  Aligned_cols=21  Identities=5%  Similarity=0.101  Sum_probs=19.3

Q ss_pred             CcEEEEcCchhHHHHHHHHHH
Q 020565           32 SHILVCGMKGTVAEFCKNIVL   52 (324)
Q Consensus        32 ~~VliiG~g~lGsei~k~L~~   52 (324)
                      -+|.|+|+|.+|+.+++.|..
T Consensus         3 i~VaIiG~GnVG~~~~~~L~~   23 (336)
T PRK08374          3 VKVSIFGFGNVGRAVAEVLAE   23 (336)
T ss_pred             eEEEEECCCHHHHHHHHHHHH
Confidence            479999999999999999877

>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

Probab=93.25  E-value=0.16  Score=47.09  Aligned_cols=32  Identities=25%  Similarity=0.223  Sum_probs=29.0

Q ss_pred             CcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (324)
Q Consensus        32 ~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d   64 (324)
                      .+|.|||+|-.|+-+|..++.+|+. +++.|..
T Consensus         4 ~kv~ViGaG~MG~gIA~~~A~~G~~-V~l~D~~   35 (307)
T COG1250           4 KKVAVIGAGVMGAGIAAVFALAGYD-VVLKDIS   35 (307)
T ss_pred             cEEEEEcccchhHHHHHHHhhcCCc-eEEEeCC
Confidence            5799999999999999999997776 9999885

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=93.24  E-value=0.44  Score=43.65  Aligned_cols=32  Identities=9%  Similarity=0.202  Sum_probs=26.9

Q ss_pred             cCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      ..+|+|+|+|.+|..++..|.+.|.. ..+++.
T Consensus         3 ~~~v~IvG~GliG~s~a~~l~~~g~~-v~i~g~   34 (279)
T COG0287           3 SMKVGIVGLGLMGGSLARALKEAGLV-VRIIGR   34 (279)
T ss_pred             CcEEEEECCchHHHHHHHHHHHcCCe-EEEEee
Confidence            46899999999999999999999987 444443

>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

Probab=93.19  E-value=0.22  Score=46.65  Aligned_cols=107  Identities=18%  Similarity=0.253  Sum_probs=64.8

Q ss_pred             HhHHHHHh--hhHHH------HHHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCccc
Q 020565           13 LYDRQIRV--WGADA------QRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVY   84 (324)
Q Consensus        13 ry~Rqi~l--~g~~~------q~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~   84 (324)
                      +++|+.|-  |...+      ...++.+++.|+|.|.+|..+|+.+..-|. ++...|...- +                
T Consensus       120 ~~~~~~r~g~w~~~~~~~~~~~~~l~gktvGIiG~GrIG~avA~r~~~Fgm-~v~y~~~~~~-~----------------  181 (324)
T COG1052         120 EGDRRVREGNWSLSGGPDPLLGFDLRGKTLGIIGLGRIGQAVARRLKGFGM-KVLYYDRSPN-P----------------  181 (324)
T ss_pred             HHHHHHhcCcccccCCcccccccCCCCCEEEEECCCHHHHHHHHHHhcCCC-EEEEECCCCC-h----------------
Confidence            45555555  44432      246889999999999999999999994443 3555554221 0                


Q ss_pred             CCccHHHHHHHHHHhhCCCCeEeEeeCCCCCCchhhcCCccEEEEcC-CCHHHHHHHHHHHH-hccCCccEEEee
Q 020565           85 GGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEFYDKFDVVVVSC-CSVTTKKLINEKCR-KLSKRVAFYTVD  157 (324)
Q Consensus        85 ~G~~ka~~~~~~l~~lnp~v~v~~~~~~~~~~~~~~~~~~diVi~~~-~~~~~~~~l~~~~~-~~~~~ip~i~~~  157 (324)
                          ..+      ++.+    ....     + .++.+++.|+|+... .+.+++..||+.-. +++.+.-+|+++
T Consensus       182 ----~~~------~~~~----~~y~-----~-l~ell~~sDii~l~~Plt~~T~hLin~~~l~~mk~ga~lVNta  236 (324)
T COG1052         182 ----EAE------KELG----ARYV-----D-LDELLAESDIISLHCPLTPETRHLINAEELAKMKPGAILVNTA  236 (324)
T ss_pred             ----HHH------hhcC----ceec-----c-HHHHHHhCCEEEEeCCCChHHhhhcCHHHHHhCCCCeEEEECC
Confidence                000      0000    1111     1 467788899886554 67888888887543 333555566655

>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=93.14  E-value=0.12  Score=45.57  Aligned_cols=39  Identities=18%  Similarity=0.150  Sum_probs=34.8

Q ss_pred             HHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCc
Q 020565           27 RRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV   65 (324)
Q Consensus        27 ~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~   65 (324)
                      ..|+..+|+|.|.|.+|..+++.|...|...+.+.|.+-
T Consensus        19 ~~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g   57 (217)
T cd05211          19 DSLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDG   57 (217)
T ss_pred             CCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCC
Confidence            357889999999999999999999999998888888743

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral

>PRK12939 short chain dehydrogenase; Provisional

Probab=93.11  E-value=0.35  Score=42.56  Aligned_cols=34  Identities=29%  Similarity=0.465  Sum_probs=28.3

Q ss_pred             HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      +++++++|.|+ |++|..+++.|+..|.. +.+++.
T Consensus         5 ~~~~~vlItGa~g~iG~~la~~l~~~G~~-v~~~~r   39 (250)
T PRK12939          5 LAGKRALVTGAARGLGAAFAEALAEAGAT-VAFNDG   39 (250)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHcCCE-EEEEeC
Confidence            56789999996 89999999999999975 666544

>PRK00676 hemA glutamyl-tRNA reductase; Validated

Probab=93.10  E-value=0.11  Score=48.77  Aligned_cols=36  Identities=14%  Similarity=0.209  Sum_probs=33.2

Q ss_pred             HHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565           28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        28 ~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      .|.+++|+|||+|-+|..++++|...|++++++...
T Consensus       171 ~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nR  206 (338)
T PRK00676        171 KSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSR  206 (338)
T ss_pred             CccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcC
Confidence            478899999999999999999999999999999754

>PLN00112 malate dehydrogenase (NADP); Provisional

Probab=93.09  E-value=0.25  Score=48.15  Aligned_cols=76  Identities=14%  Similarity=0.112  Sum_probs=52.0

Q ss_pred             cCcEEEEcC-chhHHHHHHHHHHh-------CCC-cEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhC
Q 020565           31 KSHILVCGM-KGTVAEFCKNIVLA-------GVG-SLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFN  101 (324)
Q Consensus        31 ~~~VliiG~-g~lGsei~k~L~~~-------Gv~-~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~ln  101 (324)
                      -.+|.|||+ |.+|+.++..|+..       |+. ++.++|.                      .+.|++..+--|+...
T Consensus       100 ~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~----------------------~~~~a~G~amDL~daa  157 (444)
T PLN00112        100 LINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSER----------------------SKQALEGVAMELEDSL  157 (444)
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcC----------------------CcchhHHHHHHHHHhh
Confidence            358999999 99999999999988       553 4666554                      4556666666666654


Q ss_pred             -CCC-eEeEeeCCCCCCchhhcCCccEEEEcCCC
Q 020565          102 -PMV-RVSVEKGDLSSLDGEFYDKFDVVVVSCCS  133 (324)
Q Consensus       102 -p~v-~v~~~~~~~~~~~~~~~~~~diVi~~~~~  133 (324)
                       |.. ++....     ...+.++++|+||.+...
T Consensus       158 ~~~~~~v~i~~-----~~ye~~kdaDiVVitAG~  186 (444)
T PLN00112        158 YPLLREVSIGI-----DPYEVFQDAEWALLIGAK  186 (444)
T ss_pred             hhhcCceEEec-----CCHHHhCcCCEEEECCCC
Confidence             432 222211     235678999999988764

>PRK05867 short chain dehydrogenase; Provisional

Probab=93.09  E-value=0.27  Score=43.77  Aligned_cols=34  Identities=21%  Similarity=0.276  Sum_probs=29.0

Q ss_pred             HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      +++++++|.|+ |++|.++++.|+..|.. +.+++.
T Consensus         7 ~~~k~vlVtGas~gIG~~ia~~l~~~G~~-V~~~~r   41 (253)
T PRK05867          7 LHGKRALITGASTGIGKRVALAYVEAGAQ-VAIAAR   41 (253)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEcC
Confidence            56789999997 78999999999999985 766654

>PRK06949 short chain dehydrogenase; Provisional

Probab=93.09  E-value=0.33  Score=43.06  Aligned_cols=34  Identities=29%  Similarity=0.389  Sum_probs=29.1

Q ss_pred             HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      +.+++|+|.|. |++|..+++.|+..|.. +++++.
T Consensus         7 ~~~k~ilItGasg~IG~~~a~~l~~~G~~-Vi~~~r   41 (258)
T PRK06949          7 LEGKVALVTGASSGLGARFAQVLAQAGAK-VVLASR   41 (258)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeC
Confidence            56789999996 88999999999999984 777655

>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase

Probab=93.08  E-value=0.22  Score=45.70  Aligned_cols=110  Identities=12%  Similarity=0.075  Sum_probs=63.9

Q ss_pred             EEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEeeCC--C
Q 020565           36 VCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGD--L  113 (324)
Q Consensus        36 iiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~~~--~  113 (324)
                      +||+|.+|..++++|+..|. +++++|.+.-..+.+..        .   |...+....+.++  +.++-+......  +
T Consensus         1 ~IGlG~mG~~mA~~L~~~G~-~V~v~dr~~~~~~~l~~--------~---g~~~~~s~~~~~~--~advVil~vp~~~~~   66 (288)
T TIGR01692         1 FIGLGNMGGPMAANLLKAGH-PVRVFDLFPDAVEEAVA--------A---GAQAAASPAEAAE--GADRVITMLPAGQHV   66 (288)
T ss_pred             CCcccHhHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHH--------c---CCeecCCHHHHHh--cCCEEEEeCCChHHH
Confidence            58999999999999999997 58898875433222211        1   2222222222222  223333333221  1


Q ss_pred             CCC------chhhcCCccEEEEcC-CCHHHHHHHHHHHHhccCCccEEEeeecCc
Q 020565          114 SSL------DGEFYDKFDVVVVSC-CSVTTKKLINEKCRKLSKRVAFYTVDCRDS  161 (324)
Q Consensus       114 ~~~------~~~~~~~~diVi~~~-~~~~~~~~l~~~~~~~~~~ip~i~~~~~G~  161 (324)
                      ...      ....+..-.+||+++ -++.+...+.+.+.+  +++.|+++-..|.
T Consensus        67 ~~v~~g~~~l~~~~~~g~~vid~st~~p~~~~~~~~~~~~--~g~~~vdaPv~Gg  119 (288)
T TIGR01692        67 ISVYSGDEGILPKVAKGSLLIDCSTIDPDSARKLAELAAA--HGAVFMDAPVSGG  119 (288)
T ss_pred             HHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHH--cCCcEEECCCCCC
Confidence            110      111233345666665 467777889999988  8999998876653

This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).

>PLN00016 RNA-binding protein; Provisional

Probab=93.02  E-value=0.34  Score=46.17  Aligned_cols=115  Identities=15%  Similarity=0.137  Sum_probs=66.5

Q ss_pred             HHHHhcCcEEEE----cC-chhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhh
Q 020565           26 QRRLSKSHILVC----GM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDF  100 (324)
Q Consensus        26 q~~l~~~~Vlii----G~-g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~l  100 (324)
                      -......+|+|+    |+ |-+|+.+++.|...|. ++++++.+.-....+..     .. .            ..+.++
T Consensus        47 ~~~~~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~-~V~~l~R~~~~~~~~~~-----~~-~------------~~~~~l  107 (378)
T PLN00016         47 AAAVEKKKVLIVNTNSGGHAFIGFYLAKELVKAGH-EVTLFTRGKEPSQKMKK-----EP-F------------SRFSEL  107 (378)
T ss_pred             hcccccceEEEEeccCCCceeEhHHHHHHHHHCCC-EEEEEecCCcchhhhcc-----Cc-h------------hhhhHh
Confidence            345566789999    75 7799999999999996 47877764321110000     00 0            001111


Q ss_pred             CCCCeEeEeeCCCCCCchhhc--CCccEEEEcCC-CHHHHHHHHHHHHhccCCc-cEEEeeecCceE
Q 020565          101 NPMVRVSVEKGDLSSLDGEFY--DKFDVVVVSCC-SVTTKKLINEKCRKLSKRV-AFYTVDCRDSCG  163 (324)
Q Consensus       101 np~v~v~~~~~~~~~~~~~~~--~~~diVi~~~~-~~~~~~~l~~~~~~~~~~i-p~i~~~~~G~~g  163 (324)
                      ... .++....++.+ ....+  .++|+||.+.. .......+-+.|++  .++ .||..++.|.+|
T Consensus       108 ~~~-~v~~v~~D~~d-~~~~~~~~~~d~Vi~~~~~~~~~~~~ll~aa~~--~gvkr~V~~SS~~vyg  170 (378)
T PLN00016        108 SSA-GVKTVWGDPAD-VKSKVAGAGFDVVYDNNGKDLDEVEPVADWAKS--PGLKQFLFCSSAGVYK  170 (378)
T ss_pred             hhc-CceEEEecHHH-HHhhhccCCccEEEeCCCCCHHHHHHHHHHHHH--cCCCEEEEEccHhhcC
Confidence            110 12233333322 12222  46899998864 34445567788888  676 588888887766

>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases

Probab=93.01  E-value=0.5  Score=38.84  Aligned_cols=61  Identities=18%  Similarity=0.267  Sum_probs=43.4

Q ss_pred             CcEEEEc-CchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEee
Q 020565           32 SHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEK  110 (324)
Q Consensus        32 ~~VliiG-~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~  110 (324)
                      ++|+|.| .+|+|.++++.|+..|-.++.+++..               .     ...+.+.+.+.+++.+  .++....
T Consensus         1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~---------------~-----~~~~~~~l~~~l~~~~--~~~~~~~   58 (167)
T PF00106_consen    1 KTVLITGASSGIGRALARALARRGARVVILTSRS---------------E-----DSEGAQELIQELKAPG--AKITFIE   58 (167)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESS---------------C-----HHHHHHHHHHHHHHTT--SEEEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeec---------------c-----cccccccccccccccc--ccccccc
Confidence            3689999 57999999999999998888887663               0     2345666666777555  5565555


Q ss_pred             CCCC
Q 020565          111 GDLS  114 (324)
Q Consensus       111 ~~~~  114 (324)
                      .++.
T Consensus        59 ~D~~   62 (167)
T PF00106_consen   59 CDLS   62 (167)
T ss_dssp             SETT
T ss_pred             cccc
Confidence            4443

As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....

>PRK06046 alanine dehydrogenase; Validated

Probab=92.98  E-value=0.44  Score=44.65  Aligned_cols=74  Identities=16%  Similarity=0.151  Sum_probs=53.4

Q ss_pred             cCcEEEEcCchhHHHHHHHHH-HhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEe
Q 020565           31 KSHILVCGMKGTVAEFCKNIV-LAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVE  109 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~-~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~  109 (324)
                      ..+|.|+|+|..|...+.+|. ..++..+.++|.                      ...+++.+++.+++..+ +.+...
T Consensus       129 ~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r----------------------~~~~~~~~~~~~~~~~~-~~v~~~  185 (326)
T PRK06046        129 SKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDR----------------------TKSSAEKFVERMSSVVG-CDVTVA  185 (326)
T ss_pred             CCEEEEECCcHHHHHHHHHHHhhCCceEEEEECC----------------------CHHHHHHHHHHHHhhcC-ceEEEe
Confidence            478999999999999999998 458888888877                      55577777777765433 333332


Q ss_pred             eCCCCCCchhhcCCccEEEEcCCC
Q 020565          110 KGDLSSLDGEFYDKFDVVVVSCCS  133 (324)
Q Consensus       110 ~~~~~~~~~~~~~~~diVi~~~~~  133 (324)
                      .     ..++.++ .|+|+.|+-+
T Consensus       186 ~-----~~~~~l~-aDiVv~aTps  203 (326)
T PRK06046        186 E-----DIEEACD-CDILVTTTPS  203 (326)
T ss_pred             C-----CHHHHhh-CCEEEEecCC
Confidence            2     2244555 8999999865

>PRK05866 short chain dehydrogenase; Provisional

Probab=92.97  E-value=0.3  Score=44.82  Aligned_cols=36  Identities=17%  Similarity=0.270  Sum_probs=29.7

Q ss_pred             HHHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           27 RRLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        27 ~~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      ..+++.+|+|.|+ ||+|.++++.|+..|. ++.+++.
T Consensus        36 ~~~~~k~vlItGasggIG~~la~~La~~G~-~Vi~~~R   72 (293)
T PRK05866         36 VDLTGKRILLTGASSGIGEAAAEQFARRGA-TVVAVAR   72 (293)
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEEC
Confidence            3456788999996 8999999999999997 4777654

>PLN02256 arogenate dehydrogenase

Probab=92.95  E-value=0.28  Score=45.51  Aligned_cols=36  Identities=17%  Similarity=0.154  Sum_probs=30.4

Q ss_pred             HHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565           27 RRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        27 ~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      .+.+..+|.|||+|.+|..+++.|...|. .++.+|.
T Consensus        32 ~~~~~~kI~IIG~G~mG~slA~~L~~~G~-~V~~~d~   67 (304)
T PLN02256         32 EKSRKLKIGIVGFGNFGQFLAKTFVKQGH-TVLATSR   67 (304)
T ss_pred             ccCCCCEEEEEeeCHHHHHHHHHHHhCCC-EEEEEEC
Confidence            34566789999999999999999999985 5777776

>PRK12862 malic enzyme; Reviewed

Probab=92.90  E-value=0.24  Score=51.57  Aligned_cols=40  Identities=15%  Similarity=0.229  Sum_probs=36.3

Q ss_pred             HHHhcCcEEEEcCchhHHHHHHHHHHhCCC--cEEEEcCCcc
Q 020565           27 RRLSKSHILVCGMKGTVAEFCKNIVLAGVG--SLTLMDDRVV   66 (324)
Q Consensus        27 ~~l~~~~VliiG~g~lGsei~k~L~~~Gv~--~i~lvD~d~v   66 (324)
                      ++|++.||++.|+|+.|..+++.|...|+.  +|.++|..-+
T Consensus       189 ~~~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~~~D~~G~  230 (763)
T PRK12862        189 KDIEDVKLVASGAGAAALACLDLLVSLGVKRENIWVTDIKGV  230 (763)
T ss_pred             CChhhcEEEEEChhHHHHHHHHHHHHcCCCcccEEEEcCCCe
Confidence            678999999999999999999999999995  8999997543

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=92.85  E-value=0.23  Score=49.71  Aligned_cols=36  Identities=17%  Similarity=0.157  Sum_probs=32.2

Q ss_pred             HHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565           27 RRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        27 ~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      ..|..++|.|+|+|.+|..+|+.|...|.. +..+|.
T Consensus       136 ~~l~gktvgIiG~G~IG~~vA~~l~~fG~~-V~~~d~  171 (526)
T PRK13581        136 VELYGKTLGIIGLGRIGSEVAKRAKAFGMK-VIAYDP  171 (526)
T ss_pred             cccCCCEEEEECCCHHHHHHHHHHHhCCCE-EEEECC
Confidence            358999999999999999999999999984 777776

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=92.85  E-value=0.71  Score=48.01  Aligned_cols=32  Identities=16%  Similarity=0.059  Sum_probs=29.4

Q ss_pred             CcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (324)
Q Consensus        32 ~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d   64 (324)
                      ++|.|||+|..|+.||..++.+|.. ++++|.+
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~G~~-V~l~d~~  345 (715)
T PRK11730        314 KQAAVLGAGIMGGGIAYQSASKGVP-VIMKDIN  345 (715)
T ss_pred             ceEEEECCchhHHHHHHHHHhCCCe-EEEEeCC
Confidence            4799999999999999999999986 9999974

>PRK06172 short chain dehydrogenase; Provisional

Probab=92.84  E-value=0.25  Score=43.80  Aligned_cols=34  Identities=21%  Similarity=0.196  Sum_probs=28.9

Q ss_pred             HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      |++++++|.|+ |++|.++++.|+..|.. +.+++.
T Consensus         5 l~~k~ilItGas~~iG~~ia~~l~~~G~~-v~~~~r   39 (253)
T PRK06172          5 FSGKVALVTGGAAGIGRATALAFAREGAK-VVVADR   39 (253)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHcCCE-EEEEeC
Confidence            56789999996 78999999999999964 777665

>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional

Probab=92.84  E-value=0.2  Score=46.94  Aligned_cols=92  Identities=13%  Similarity=0.122  Sum_probs=56.9

Q ss_pred             HHhcCcEEEEcCchhHHHHHHHHH-HhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeE
Q 020565           28 RLSKSHILVCGMKGTVAEFCKNIV-LAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRV  106 (324)
Q Consensus        28 ~l~~~~VliiG~g~lGsei~k~L~-~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v  106 (324)
                      .|..++|.|||+|.+|.++++.|. ..|+. +...|... .            .+.              ..+.+  +  
T Consensus       142 ~L~gktvGIiG~G~IG~~va~~l~~~fgm~-V~~~~~~~-~------------~~~--------------~~~~~--~--  189 (323)
T PRK15409        142 DVHHKTLGIVGMGRIGMALAQRAHFGFNMP-ILYNARRH-H------------KEA--------------EERFN--A--  189 (323)
T ss_pred             CCCCCEEEEEcccHHHHHHHHHHHhcCCCE-EEEECCCC-c------------hhh--------------HHhcC--c--
Confidence            689999999999999999999987 55654 55555410 0            000              00000  1  


Q ss_pred             eEeeCCCCCCchhhcCCccEEEEcC-CCHHHHHHHHHHH-HhccCCccEEEee
Q 020565          107 SVEKGDLSSLDGEFYDKFDVVVVSC-CSVTTKKLINEKC-RKLSKRVAFYTVD  157 (324)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~diVi~~~-~~~~~~~~l~~~~-~~~~~~ip~i~~~  157 (324)
                      +.      ...+++++.+|+|+.+. .+.+++..+++.- .+++.+--||+++
T Consensus       190 ~~------~~l~ell~~sDvv~lh~plt~~T~~li~~~~l~~mk~ga~lIN~a  236 (323)
T PRK15409        190 RY------CDLDTLLQESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFINAG  236 (323)
T ss_pred             Ee------cCHHHHHHhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECC
Confidence            11      01356788899987765 5777887777643 3333555566665

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=92.81  E-value=0.32  Score=47.42  Aligned_cols=38  Identities=21%  Similarity=0.337  Sum_probs=33.1

Q ss_pred             HhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccc
Q 020565           29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVT   67 (324)
Q Consensus        29 l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~   67 (324)
                      +.+.+|+|+|+|..|..+++.|.+.|. .+++.|.....
T Consensus         5 ~~~~kv~V~GLG~sG~a~a~~L~~~G~-~v~v~D~~~~~   42 (448)
T COG0771           5 FQGKKVLVLGLGKSGLAAARFLLKLGA-EVTVSDDRPAP   42 (448)
T ss_pred             ccCCEEEEEecccccHHHHHHHHHCCC-eEEEEcCCCCc
Confidence            448899999999999999999999995 49999985554

>PLN02896 cinnamyl-alcohol dehydrogenase

Probab=92.79  E-value=0.91  Score=42.67  Aligned_cols=33  Identities=12%  Similarity=0.004  Sum_probs=26.4

Q ss_pred             hcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           30 SKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        30 ~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      .+.+|+|.|. |.+|+.+++.|+..|.. +++++.
T Consensus         9 ~~~~vLVtG~~GfIG~~l~~~L~~~G~~-V~~~~r   42 (353)
T PLN02896          9 ATGTYCVTGATGYIGSWLVKLLLQRGYT-VHATLR   42 (353)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeC
Confidence            3568999995 78999999999999975 555544

>PLN02166 dTDP-glucose 4,6-dehydratase

Probab=92.74  E-value=0.77  Score=44.83  Aligned_cols=104  Identities=14%  Similarity=0.225  Sum_probs=60.9

Q ss_pred             hcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeE
Q 020565           30 SKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV  108 (324)
Q Consensus        30 ~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~  108 (324)
                      +..+|+|.|. |-+|+.+++.|...|.. ++.+|....                   +. +...  ..+.. ++  .++.
T Consensus       119 ~~mkILVTGatGFIGs~Lv~~Ll~~G~~-V~~ldr~~~-------------------~~-~~~~--~~~~~-~~--~~~~  172 (436)
T PLN02166        119 KRLRIVVTGGAGFVGSHLVDKLIGRGDE-VIVIDNFFT-------------------GR-KENL--VHLFG-NP--RFEL  172 (436)
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCCE-EEEEeCCCC-------------------cc-HhHh--hhhcc-CC--ceEE
Confidence            4468999996 67999999999999974 777775321                   10 0000  00000 12  2333


Q ss_pred             eeCCCCCCchhhcCCccEEEEcCC---------CHH--------HHHHHHHHHHhccCCccEEEeeecCceEE
Q 020565          109 EKGDLSSLDGEFYDKFDVVVVSCC---------SVT--------TKKLINEKCRKLSKRVAFYTVDCRDSCGE  164 (324)
Q Consensus       109 ~~~~~~~~~~~~~~~~diVi~~~~---------~~~--------~~~~l~~~~~~~~~~ip~i~~~~~G~~g~  164 (324)
                      ...++.   +..+.++|+||-+..         ++.        .-..+-+.|++  .++.||.+++...||.
T Consensus       173 ~~~Di~---~~~~~~~D~ViHlAa~~~~~~~~~~p~~~~~~Nv~gT~nLleaa~~--~g~r~V~~SS~~VYg~  240 (436)
T PLN02166        173 IRHDVV---EPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKR--VGARFLLTSTSEVYGD  240 (436)
T ss_pred             EECccc---cccccCCCEEEECceeccchhhccCHHHHHHHHHHHHHHHHHHHHH--hCCEEEEECcHHHhCC
Confidence            333332   223457888886552         111        12345578888  6778999888777763

>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase

Probab=92.71  E-value=0.35  Score=42.68  Aligned_cols=34  Identities=21%  Similarity=0.366  Sum_probs=28.5

Q ss_pred             HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      |++++++|.|+ |++|..+++.|+..|.. +.++|.
T Consensus         1 ~~~~~ilItGas~~iG~~la~~l~~~g~~-v~~~~r   35 (250)
T TIGR03206         1 LKDKTAIVTGGGGGIGGATCRRFAEEGAK-VAVFDL   35 (250)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCCE-EEEecC
Confidence            46788999995 78999999999999974 777665

Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.

>PRK08605 D-lactate dehydrogenase; Validated

Probab=92.70  E-value=0.3  Score=45.95  Aligned_cols=36  Identities=17%  Similarity=0.166  Sum_probs=28.6

Q ss_pred             HHHhcCcEEEEcCchhHHHHHHHHHH-hCCCcEEEEcC
Q 020565           27 RRLSKSHILVCGMKGTVAEFCKNIVL-AGVGSLTLMDD   63 (324)
Q Consensus        27 ~~l~~~~VliiG~g~lGsei~k~L~~-~Gv~~i~lvD~   63 (324)
                      ..|..++|.|||+|.+|..+++.|+. .|+ ++..+|.
T Consensus       142 ~~l~g~~VgIIG~G~IG~~vA~~L~~~~g~-~V~~~d~  178 (332)
T PRK08605        142 RSIKDLKVAVIGTGRIGLAVAKIFAKGYGS-DVVAYDP  178 (332)
T ss_pred             ceeCCCEEEEECCCHHHHHHHHHHHhcCCC-EEEEECC
Confidence            35899999999999999999999953 454 3555554

>PRK07576 short chain dehydrogenase; Provisional

Probab=92.70  E-value=0.18  Score=45.33  Aligned_cols=37  Identities=14%  Similarity=0.244  Sum_probs=31.4

Q ss_pred             HHHHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           26 QRRLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        26 q~~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      ..++++++++|.|. |++|.++++.|+..|.. +.++|.
T Consensus         4 ~~~~~~k~ilItGasggIG~~la~~l~~~G~~-V~~~~r   41 (264)
T PRK07576          4 MFDFAGKNVVVVGGTSGINLGIAQAFARAGAN-VAVASR   41 (264)
T ss_pred             cccCCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEeC
Confidence            34578899999997 79999999999999975 777765

>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=92.65  E-value=0.63  Score=45.70  Aligned_cols=33  Identities=15%  Similarity=0.157  Sum_probs=29.2

Q ss_pred             hcCcEEEEcCchhHHH-HHHHHHHhCCCcEEEEcC
Q 020565           30 SKSHILVCGMKGTVAE-FCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        30 ~~~~VliiG~g~lGse-i~k~L~~~Gv~~i~lvD~   63 (324)
                      +..+|+|+|+|+.|.. +|+.|...|.. ++..|.
T Consensus         6 ~~~~v~viG~G~sG~s~~a~~L~~~G~~-V~~~D~   39 (461)
T PRK00421          6 RIKRIHFVGIGGIGMSGLAEVLLNLGYK-VSGSDL   39 (461)
T ss_pred             CCCEEEEEEEchhhHHHHHHHHHhCCCe-EEEECC
Confidence            4578999999999999 79999999987 788776

>PRK09186 flagellin modification protein A; Provisional

Probab=92.63  E-value=0.4  Score=42.48  Aligned_cols=34  Identities=26%  Similarity=0.201  Sum_probs=28.2

Q ss_pred             HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      +++++|+|.|+ |++|.++++.|+..|.. +.+++.
T Consensus         2 ~~~k~vlItGas~giG~~~a~~l~~~g~~-v~~~~r   36 (256)
T PRK09186          2 LKGKTILITGAGGLIGSALVKAILEAGGI-VIAADI   36 (256)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEec
Confidence            45788999996 78999999999999975 666643

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=92.60  E-value=0.31  Score=48.53  Aligned_cols=32  Identities=25%  Similarity=0.270  Sum_probs=29.1

Q ss_pred             CcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (324)
Q Consensus        32 ~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d   64 (324)
                      ++|.|||+|..|+.+|.+|+.+|+. ++++|.+
T Consensus         8 ~~V~VIGaG~MG~gIA~~la~aG~~-V~l~D~~   39 (507)
T PRK08268          8 ATVAVIGAGAMGAGIAQVAAQAGHT-VLLYDAR   39 (507)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCe-EEEEeCC
Confidence            5799999999999999999999986 8898874

>PRK10675 UDP-galactose-4-epimerase; Provisional

Probab=92.60  E-value=1  Score=41.74  Aligned_cols=30  Identities=20%  Similarity=0.403  Sum_probs=25.3

Q ss_pred             cEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           33 HILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        33 ~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      +|+|.|+ |.+|..+++.|+..|.. ++++|.
T Consensus         2 ~vlVtGatG~iG~~l~~~L~~~g~~-V~~~~~   32 (338)
T PRK10675          2 RVLVTGGSGYIGSHTCVQLLQNGHD-VVILDN   32 (338)
T ss_pred             eEEEECCCChHHHHHHHHHHHCCCe-EEEEec
Confidence            6999995 89999999999999975 666653

>PRK06436 glycerate dehydrogenase; Provisional

Probab=92.57  E-value=0.1  Score=48.45  Aligned_cols=43  Identities=9%  Similarity=0.090  Sum_probs=34.8

Q ss_pred             hhHHHHHHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565           21 WGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (324)
Q Consensus        21 ~g~~~q~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d   64 (324)
                      |.......|..++|.|+|+|.+|.++++.|...|.. +..+|..
T Consensus       112 w~~~~~~~L~gktvgIiG~G~IG~~vA~~l~afG~~-V~~~~r~  154 (303)
T PRK06436        112 FKQSPTKLLYNKSLGILGYGGIGRRVALLAKAFGMN-IYAYTRS  154 (303)
T ss_pred             CCCCCCCCCCCCEEEEECcCHHHHHHHHHHHHCCCE-EEEECCC
Confidence            543333579999999999999999999988888884 7888863

>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes

Probab=92.56  E-value=0.89  Score=42.17  Aligned_cols=38  Identities=13%  Similarity=0.207  Sum_probs=30.5

Q ss_pred             cEEEEcCchhHHHHHHHHHHhCCC--cEEEEcCCcccccc
Q 020565           33 HILVCGMKGTVAEFCKNIVLAGVG--SLTLMDDRVVTEEA   70 (324)
Q Consensus        33 ~VliiG~g~lGsei~k~L~~~Gv~--~i~lvD~d~v~~~n   70 (324)
                      +|.|||+||-|+.++..|.+.|+.  .+..+|.|.-..+.
T Consensus         2 ~i~viGvGg~G~n~v~~l~~~~~~~~~~~a~ntD~~~L~~   41 (304)
T cd02201           2 KIKVIGVGGGGGNAVNRMIESGLEGVEFIAANTDAQALAK   41 (304)
T ss_pred             eEEEEEeCCcHHHHHHHHHHcCCCCceEEEEECCHHHHhc
Confidence            689999999999999999999986  34567776644333

FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=92.54  E-value=0.68  Score=43.61  Aligned_cols=33  Identities=21%  Similarity=0.244  Sum_probs=29.0

Q ss_pred             cCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      ..+|+|.|+|++|..++..+...|+.+++.+|.
T Consensus       177 g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~  209 (358)
T TIGR03451       177 GDSVAVIGCGGVGDAAIAGAALAGASKIIAVDI  209 (358)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcC
Confidence            578999999999999999888999987877765

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>PRK08213 gluconate 5-dehydrogenase; Provisional

Probab=92.51  E-value=0.38  Score=42.89  Aligned_cols=35  Identities=26%  Similarity=0.287  Sum_probs=30.0

Q ss_pred             HHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        28 ~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      ++++++++|.|+ |++|..+++.|+..|.. +++++.
T Consensus         9 ~~~~k~ilItGa~g~IG~~la~~l~~~G~~-V~~~~r   44 (259)
T PRK08213          9 DLSGKTALVTGGSRGLGLQIAEALGEAGAR-VVLSAR   44 (259)
T ss_pred             CcCCCEEEEECCCchHHHHHHHHHHHcCCE-EEEEeC
Confidence            467899999995 88999999999999984 777765

>PRK06181 short chain dehydrogenase; Provisional

Probab=92.46  E-value=0.45  Score=42.42  Aligned_cols=31  Identities=19%  Similarity=0.363  Sum_probs=26.6

Q ss_pred             CcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           32 SHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        32 ~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      .+|+|.|+ |++|.++++.|+..|. +++++|.
T Consensus         2 ~~vlVtGasg~iG~~la~~l~~~g~-~Vi~~~r   33 (263)
T PRK06181          2 KVVIITGASEGIGRALAVRLARAGA-QLVLAAR   33 (263)
T ss_pred             CEEEEecCCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence            46999997 8899999999999996 5777765

>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=92.46  E-value=0.41  Score=42.64  Aligned_cols=35  Identities=17%  Similarity=0.276  Sum_probs=29.5

Q ss_pred             HHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        28 ~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      +|++++|+|.|+ |++|..+++.|+..|.. +.+++.
T Consensus        12 ~l~~k~vlItGas~gIG~~ia~~l~~~G~~-v~~~~~   47 (258)
T PRK06935         12 SLDGKVAIVTGGNTGLGQGYAVALAKAGAD-IIITTH   47 (258)
T ss_pred             cCCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEeC
Confidence            367889999997 78999999999999986 666655

>PRK06139 short chain dehydrogenase; Provisional

Probab=92.44  E-value=0.44  Score=44.65  Aligned_cols=35  Identities=17%  Similarity=0.257  Sum_probs=29.9

Q ss_pred             HHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        28 ~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      .+.+++|+|.|+ ||+|.++++.|+..|.. +.+++.
T Consensus         4 ~l~~k~vlITGAs~GIG~aia~~la~~G~~-Vvl~~R   39 (330)
T PRK06139          4 PLHGAVVVITGASSGIGQATAEAFARRGAR-LVLAAR   39 (330)
T ss_pred             CCCCCEEEEcCCCCHHHHHHHHHHHHCCCE-EEEEEC
Confidence            467789999997 78999999999999975 777665

>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional

Probab=92.41  E-value=0.77  Score=43.15  Aligned_cols=36  Identities=11%  Similarity=0.169  Sum_probs=29.9

Q ss_pred             HHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCC
Q 020565           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDR   64 (324)
Q Consensus        28 ~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d   64 (324)
                      .++.++|+|.|. |=+|+.+++.|...|. +++.+|..
T Consensus        12 ~~~~~~vlVtGatGfiG~~lv~~L~~~g~-~V~~~d~~   48 (348)
T PRK15181         12 VLAPKRWLITGVAGFIGSGLLEELLFLNQ-TVIGLDNF   48 (348)
T ss_pred             cccCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            456689999996 7799999999999996 47777753

>PRK06199 ornithine cyclodeaminase; Validated

Probab=92.40  E-value=0.72  Score=44.21  Aligned_cols=81  Identities=14%  Similarity=0.160  Sum_probs=61.6

Q ss_pred             HHHHh---cCcEEEEcCchhHHHHHHHHHHh--CCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhh
Q 020565           26 QRRLS---KSHILVCGMKGTVAEFCKNIVLA--GVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDF  100 (324)
Q Consensus        26 q~~l~---~~~VliiG~g~lGsei~k~L~~~--Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~l  100 (324)
                      -+.|.   .+++.|+|+|.-+-.-++.++..  ++.++.++|.                      ...|++..++++++.
T Consensus       147 a~~LAr~da~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r----------------------~~~~a~~f~~~~~~~  204 (379)
T PRK06199        147 ARHLARKDSKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGR----------------------GQKSLDSFATWVAET  204 (379)
T ss_pred             HHHhccCCCCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECC----------------------CHHHHHHHHHHHHHh
Confidence            34554   47899999999999999988763  4889999876                      666888999999887


Q ss_pred             CCCC-eEeEeeCCCCCCchhhcCCccEEEEcCCC
Q 020565          101 NPMV-RVSVEKGDLSSLDGEFYDKFDVVVVSCCS  133 (324)
Q Consensus       101 np~v-~v~~~~~~~~~~~~~~~~~~diVi~~~~~  133 (324)
                      .+.+ .+...     +..++.+.++|+|+.|+.+
T Consensus       205 ~~~~~~v~~~-----~s~~eav~~ADIVvtaT~s  233 (379)
T PRK06199        205 YPQITNVEVV-----DSIEEVVRGSDIVTYCNSG  233 (379)
T ss_pred             cCCCceEEEe-----CCHHHHHcCCCEEEEccCC
Confidence            6644 35443     2346678899999988864

>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot

Probab=92.37  E-value=0.52  Score=36.70  Aligned_cols=22  Identities=5%  Similarity=0.110  Sum_probs=20.2

Q ss_pred             cEEEEcCchhHHHHHHHHHHhC
Q 020565           33 HILVCGMKGTVAEFCKNIVLAG   54 (324)
Q Consensus        33 ~VliiG~g~lGsei~k~L~~~G   54 (324)
                      ||.|||+|..|..-+..+...+
T Consensus         2 ~v~iiG~G~~g~~~~~~~~~~~   23 (120)
T PF01408_consen    2 RVGIIGAGSIGRRHLRALLRSS   23 (120)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTT
T ss_pred             EEEEECCcHHHHHHHHHHHhcC
Confidence            6899999999999999999883

GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....

>PLN02928 oxidoreductase family protein

Probab=92.36  E-value=0.13  Score=48.61  Aligned_cols=105  Identities=21%  Similarity=0.215  Sum_probs=62.1

Q ss_pred             HHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeE
Q 020565           27 RRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRV  106 (324)
Q Consensus        27 ~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v  106 (324)
                      ..|..++|.|+|+|.+|.++|+.|...|. +++.+|...-....  .       ..   |. +           .+.+..
T Consensus       155 ~~l~gktvGIiG~G~IG~~vA~~l~afG~-~V~~~dr~~~~~~~--~-------~~---~~-~-----------~~~~~~  209 (347)
T PLN02928        155 DTLFGKTVFILGYGAIGIELAKRLRPFGV-KLLATRRSWTSEPE--D-------GL---LI-P-----------NGDVDD  209 (347)
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHHhhCCC-EEEEECCCCChhhh--h-------hh---cc-c-----------cccccc
Confidence            35889999999999999999999999998 58888762100000  0       00   00 0           000000


Q ss_pred             eEe-eCCCCCCchhhcCCccEEEEcC-CCHHHHHHHHHHH-HhccCCccEEEee
Q 020565          107 SVE-KGDLSSLDGEFYDKFDVVVVSC-CSVTTKKLINEKC-RKLSKRVAFYTVD  157 (324)
Q Consensus       107 ~~~-~~~~~~~~~~~~~~~diVi~~~-~~~~~~~~l~~~~-~~~~~~ip~i~~~  157 (324)
                      -.. .... ...+++++.+|+|+.+. .+.+++..+++.. ..++.+.-+|+++
T Consensus       210 ~~~~~~~~-~~L~ell~~aDiVvl~lPlt~~T~~li~~~~l~~Mk~ga~lINva  262 (347)
T PLN02928        210 LVDEKGGH-EDIYEFAGEADIVVLCCTLTKETAGIVNDEFLSSMKKGALLVNIA  262 (347)
T ss_pred             cccccCcc-cCHHHHHhhCCEEEECCCCChHhhcccCHHHHhcCCCCeEEEECC
Confidence            000 0011 23467889999998887 4677777777532 3333555566655

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=92.36  E-value=2.4  Score=36.51  Aligned_cols=95  Identities=17%  Similarity=0.218  Sum_probs=51.9

Q ss_pred             HhcCcEEEEcCchhHHHHHHHHHHhC-CCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEe
Q 020565           29 LSKSHILVCGMKGTVAEFCKNIVLAG-VGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS  107 (324)
Q Consensus        29 l~~~~VliiG~g~lGsei~k~L~~~G-v~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~  107 (324)
                      ....+|+-+|||+ |.-.+..+.+.| -++++-+|.                      .....+.+++++++.+-.-++.
T Consensus        39 ~~~~~vlDlG~Gt-G~~s~~~a~~~~~~~~v~avD~----------------------~~~~~~~a~~n~~~~g~~~~v~   95 (198)
T PRK00377         39 RKGDMILDIGCGT-GSVTVEASLLVGETGKVYAVDK----------------------DEKAINLTRRNAEKFGVLNNIV   95 (198)
T ss_pred             CCcCEEEEeCCcC-CHHHHHHHHHhCCCCEEEEEEC----------------------CHHHHHHHHHHHHHhCCCCCeE
Confidence            3557899999986 655554443444 357888876                      3445566666666654112334


Q ss_pred             EeeCCCCCCchhhcCCccEEEEcCCCHHHHHHHHHHHHh
Q 020565          108 VEKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRK  146 (324)
Q Consensus       108 ~~~~~~~~~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~  146 (324)
                      ....+..+.....-..+|.|+...........+...++.
T Consensus        96 ~~~~d~~~~l~~~~~~~D~V~~~~~~~~~~~~l~~~~~~  134 (198)
T PRK00377         96 LIKGEAPEILFTINEKFDRIFIGGGSEKLKEIISASWEI  134 (198)
T ss_pred             EEEechhhhHhhcCCCCCEEEECCCcccHHHHHHHHHHH
Confidence            333333221112124799999865433334445555544

>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase

Probab=92.35  E-value=0.71  Score=47.70  Aligned_cols=34  Identities=24%  Similarity=0.322  Sum_probs=28.6

Q ss_pred             HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      |..++|+|.|+ |++|.++++.|+..|. ++.++|.
T Consensus       412 l~gkvvLVTGasggIG~aiA~~La~~Ga-~Vvi~~r  446 (676)
T TIGR02632       412 LARRVAFVTGGAGGIGRETARRLAAEGA-HVVLADL  446 (676)
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHhCCC-EEEEEeC
Confidence            35678999996 7899999999999997 5777765

>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4

Probab=92.34  E-value=0.92  Score=44.16  Aligned_cols=107  Identities=12%  Similarity=0.084  Sum_probs=71.4

Q ss_pred             cEEEEcCchhH-HHHHHHHHH----hCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEe
Q 020565           33 HILVCGMKGTV-AEFCKNIVL----AGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS  107 (324)
Q Consensus        33 ~VliiG~g~lG-sei~k~L~~----~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~  107 (324)
                      ||.|||.||.= -++++.|+.    ..+++|.|+|-|.-..+.                  -...+.+..++..+.++++
T Consensus         2 KI~iIGgGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~------------------v~~l~~~~~~~~g~~~~v~   63 (425)
T cd05197           2 KIAIIGGGSSFTPELVSGLLKTPEELPISEVTLYDIDEERLDI------------------ILTIAKRYVEEVGADIKFE   63 (425)
T ss_pred             EEEEECCchHhHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHH------------------HHHHHHHHHHhhCCCeEEE
Confidence            79999999853 377777773    446899999874221110                  1234445556677777776


Q ss_pred             EeeCCCCCCchhhcCCccEEEEcC--CCHHHHHHHHHHHHhccCCccEEEeeecCceEEEE
Q 020565          108 VEKGDLSSLDGEFYDKFDVVVVSC--CSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIF  166 (324)
Q Consensus       108 ~~~~~~~~~~~~~~~~~diVi~~~--~~~~~~~~l~~~~~~~~~~ip~i~~~~~G~~g~v~  166 (324)
                      ....     ..+-++++|+||.+.  ...+.+..=-+++.+  +|+  +-..+.|-.|.++
T Consensus        64 ~ttD-----~~~Al~gADfVi~~irvGg~~~r~~De~Iplk--~G~--~gqeT~G~GG~~~  115 (425)
T cd05197          64 KTMD-----LEDAIIDADFVINQFRVGGLTYREKDEQIPLK--YGV--IGQETVGPGGTFS  115 (425)
T ss_pred             EeCC-----HHHHhCCCCEEEEeeecCChHHHHHHHhHHHH--cCc--ccccccCcchhhh
Confidence            6532     367789999999886  455666655567877  765  4477888778554

Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in

>PRK12861 malic enzyme; Reviewed

Probab=92.34  E-value=0.33  Score=50.38  Aligned_cols=40  Identities=13%  Similarity=0.184  Sum_probs=36.4

Q ss_pred             HHHhcCcEEEEcCchhHHHHHHHHHHhCCC--cEEEEcCCcc
Q 020565           27 RRLSKSHILVCGMKGTVAEFCKNIVLAGVG--SLTLMDDRVV   66 (324)
Q Consensus        27 ~~l~~~~VliiG~g~lGsei~k~L~~~Gv~--~i~lvD~d~v   66 (324)
                      ++|++.||++.|+|+.|..+++.|...|+.  +|.++|..-+
T Consensus       185 k~l~d~~iv~~GAGaAg~~ia~~l~~~G~~~~~i~~~D~~Gl  226 (764)
T PRK12861        185 KSIKEVKVVTSGAGAAALACLDLLVDLGLPVENIWVTDIEGV  226 (764)
T ss_pred             CChhHcEEEEECHhHHHHHHHHHHHHcCCChhhEEEEcCCCe
Confidence            688999999999999999999999999996  8999997543

>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]

Probab=92.30  E-value=0.19  Score=46.02  Aligned_cols=116  Identities=16%  Similarity=0.128  Sum_probs=69.3

Q ss_pred             CcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEeeC
Q 020565           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKG  111 (324)
Q Consensus        32 ~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~~  111 (324)
                      .+|.+||+|..|..+++||..+|.. ++++|.+.-....+-+.       -   |-.-+...++...+.  ++-+.....
T Consensus         1 ~kIafIGLG~MG~pmA~~L~~aG~~-v~v~~r~~~ka~~~~~~-------~---Ga~~a~s~~eaa~~a--DvVitmv~~   67 (286)
T COG2084           1 MKIAFIGLGIMGSPMAANLLKAGHE-VTVYNRTPEKAAELLAA-------A---GATVAASPAEAAAEA--DVVITMLPD   67 (286)
T ss_pred             CeEEEEcCchhhHHHHHHHHHCCCE-EEEEeCChhhhhHHHHH-------c---CCcccCCHHHHHHhC--CEEEEecCC
Confidence            4799999999999999999999965 88887754331111110       0   222222222222221  222322222


Q ss_pred             C--CCCC------chhhcCCccEEEEcC-CCHHHHHHHHHHHHhccCCccEEEeeecCce
Q 020565          112 D--LSSL------DGEFYDKFDVVVVSC-CSVTTKKLINEKCRKLSKRVAFYTVDCRDSC  162 (324)
Q Consensus       112 ~--~~~~------~~~~~~~~diVi~~~-~~~~~~~~l~~~~~~~~~~ip~i~~~~~G~~  162 (324)
                      .  +.+.      ..+.+++=.++|+++ -++...+.+.+...+  ++..|+++-+.|..
T Consensus        68 ~~~V~~V~~g~~g~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~--~G~~~lDAPVsGg~  125 (286)
T COG2084          68 DAAVRAVLFGENGLLEGLKPGAIVIDMSTISPETARELAAALAA--KGLEFLDAPVSGGV  125 (286)
T ss_pred             HHHHHHHHhCccchhhcCCCCCEEEECCCCCHHHHHHHHHHHHh--cCCcEEecCccCCc
Confidence            1  1110      011223456777665 578888999999999  99999999998843

>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=92.29  E-value=0.77  Score=42.01  Aligned_cols=70  Identities=17%  Similarity=0.220  Sum_probs=49.6

Q ss_pred             HHHHHHHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhC
Q 020565           23 ADAQRRLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFN  101 (324)
Q Consensus        23 ~~~q~~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~ln  101 (324)
                      .....++.++.|+|-|+ .|+|-++|+.|+..|.+-+.++ .                      -..+-+.+++.+++.-
T Consensus         4 ~~~~e~~~~kvVvITGASsGIG~~lA~~la~~G~~l~lva-r----------------------~~rrl~~v~~~l~~~~   60 (282)
T KOG1205|consen    4 NLFMERLAGKVVLITGASSGIGEALAYELAKRGAKLVLVA-R----------------------RARRLERVAEELRKLG   60 (282)
T ss_pred             cccHHHhCCCEEEEeCCCcHHHHHHHHHHHhCCCceEEee-h----------------------hhhhHHHHHHHHHHhC
Confidence            34568899999999998 5899999999999999844332 2                      2335566666666665


Q ss_pred             CCCeEeEeeCCCCC
Q 020565          102 PMVRVSVEKGDLSS  115 (324)
Q Consensus       102 p~v~v~~~~~~~~~  115 (324)
                      |.-++.+...++++
T Consensus        61 ~~~~v~~~~~Dvs~   74 (282)
T KOG1205|consen   61 SLEKVLVLQLDVSD   74 (282)
T ss_pred             CcCccEEEeCccCC
Confidence            54356666666553

>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases

Probab=92.24  E-value=0.49  Score=46.18  Aligned_cols=107  Identities=16%  Similarity=0.135  Sum_probs=69.4

Q ss_pred             cEEEEcCchhHH-HHHHHHHH----hCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEe
Q 020565           33 HILVCGMKGTVA-EFCKNIVL----AGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS  107 (324)
Q Consensus        33 ~VliiG~g~lGs-ei~k~L~~----~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~  107 (324)
                      ||.|||.||.=+ ++++-|+.    .++++|+|+|-|.-..   ..               -...+.+..++.++.++++
T Consensus         2 KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~DId~~rl---~~---------------v~~l~~~~~~~~g~~~~v~   63 (437)
T cd05298           2 KIVIAGGGSTYTPGIVKSLLDRKEDFPLRELVLYDIDAERQ---EK---------------VAEAVKILFKENYPEIKFV   63 (437)
T ss_pred             eEEEECCcHHHHHHHHHHHHhCcccCCCCEEEEECCCHHHH---HH---------------HHHHHHHHHHhhCCCeEEE
Confidence            799999998644 66777764    4568999998743111   10               1123334445556666666


Q ss_pred             EeeCCCCCCchhhcCCccEEEEcC--CCHHHHHHHHHHHHhccCCccEEEeeecCceEEEE
Q 020565          108 VEKGDLSSLDGEFYDKFDVVVVSC--CSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIF  166 (324)
Q Consensus       108 ~~~~~~~~~~~~~~~~~diVi~~~--~~~~~~~~l~~~~~~~~~~ip~i~~~~~G~~g~v~  166 (324)
                      ...     ...+-++++|+||.+.  ...+.+..=-+++.+  +|+  +...+.|.-|.++
T Consensus        64 ~Tt-----dr~eAl~gADfVi~~irvGg~~~r~~De~Ip~k--yGi--~gqET~G~GG~~~  115 (437)
T cd05298          64 YTT-----DPEEAFTDADFVFAQIRVGGYAMREQDEKIPLK--HGV--VGQETCGPGGFAY  115 (437)
T ss_pred             EEC-----CHHHHhCCCCEEEEEeeeCCchHHHHHHhHHHH--cCc--ceecCccHHHHHH
Confidence            643     2367789999999886  355666666678888  886  5557777777443

Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas

>PRK07035 short chain dehydrogenase; Provisional

Probab=92.21  E-value=0.45  Score=42.17  Aligned_cols=34  Identities=21%  Similarity=0.304  Sum_probs=29.6

Q ss_pred             HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      |++++|+|.|+ |++|.++++.|+..|. ++.++|.
T Consensus         6 l~~k~vlItGas~gIG~~l~~~l~~~G~-~Vi~~~r   40 (252)
T PRK07035          6 LTGKIALVTGASRGIGEAIAKLLAQQGA-HVIVSSR   40 (252)
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence            67789999996 7899999999999997 5888776

>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type

Probab=92.20  E-value=0.66  Score=43.44  Aligned_cols=74  Identities=12%  Similarity=0.064  Sum_probs=52.5

Q ss_pred             cCcEEEEcCchhHHHHHHHHHH-hCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEe
Q 020565           31 KSHILVCGMKGTVAEFCKNIVL-AGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVE  109 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~~-~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~  109 (324)
                      ..++.|||+|..|..-++.|.. ..+.++.++|.                      ...|++..++++++..+  ++...
T Consensus       128 ~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r----------------------~~~~~~~~~~~~~~~g~--~v~~~  183 (325)
T TIGR02371       128 SSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCR----------------------TPSTREKFALRASDYEV--PVRAA  183 (325)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECC----------------------CHHHHHHHHHHHHhhCC--cEEEe
Confidence            4789999999999987777654 34566777655                      66678888888876532  33332


Q ss_pred             eCCCCCCchhhcCCccEEEEcCCC
Q 020565          110 KGDLSSLDGEFYDKFDVVVVSCCS  133 (324)
Q Consensus       110 ~~~~~~~~~~~~~~~diVi~~~~~  133 (324)
                           ....+.+++.|+|+.|+.+
T Consensus       184 -----~~~~eav~~aDiVitaT~s  202 (325)
T TIGR02371       184 -----TDPREAVEGCDILVTTTPS  202 (325)
T ss_pred             -----CCHHHHhccCCEEEEecCC
Confidence                 2345667899999998865

This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.

>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent

Probab=92.19  E-value=0.16  Score=47.54  Aligned_cols=31  Identities=19%  Similarity=0.131  Sum_probs=28.1

Q ss_pred             cEEEEcC-chhHHHHHHHHHHhCCC------cEEEEcC
Q 020565           33 HILVCGM-KGTVAEFCKNIVLAGVG------SLTLMDD   63 (324)
Q Consensus        33 ~VliiG~-g~lGsei~k~L~~~Gv~------~i~lvD~   63 (324)
                      ||.|+|+ |.+|+.++..|+..|+-      .+.|+|-
T Consensus         1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~   38 (324)
T TIGR01758         1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDI   38 (324)
T ss_pred             CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEec
Confidence            6999999 99999999999998886      4999986

This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography

>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=92.13  E-value=0.41  Score=42.03  Aligned_cols=34  Identities=18%  Similarity=0.221  Sum_probs=27.9

Q ss_pred             HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEE-cC
Q 020565           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLM-DD   63 (324)
Q Consensus        29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lv-D~   63 (324)
                      |++++++|+|. |++|.++++.|+..|.. +.++ +.
T Consensus         3 ~~~~~ilI~Gasg~iG~~la~~l~~~g~~-v~~~~~r   38 (247)
T PRK05565          3 LMGKVAIVTGASGGIGRAIAELLAKEGAK-VVIAYDI   38 (247)
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEcCC
Confidence            56789999996 89999999999999986 5544 54

>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]

Probab=92.11  E-value=1  Score=41.26  Aligned_cols=90  Identities=11%  Similarity=0.116  Sum_probs=58.3

Q ss_pred             cEEEEcCc-hhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEeeC
Q 020565           33 HILVCGMK-GTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKG  111 (324)
Q Consensus        33 ~VliiG~g-~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~~  111 (324)
                      +|||.|.+ -+|.++++.|.  +-..++-.|...+                   .-.-.+.+.+.+++..|++-|+.-..
T Consensus         2 ~iLi~G~~GqLG~~L~~~l~--~~~~v~a~~~~~~-------------------Ditd~~~v~~~i~~~~PDvVIn~AAy   60 (281)
T COG1091           2 KILITGANGQLGTELRRALP--GEFEVIATDRAEL-------------------DITDPDAVLEVIRETRPDVVINAAAY   60 (281)
T ss_pred             cEEEEcCCChHHHHHHHHhC--CCceEEeccCccc-------------------cccChHHHHHHHHhhCCCEEEECccc
Confidence            49999975 59999999998  4344555555332                   22334567888999999987765321


Q ss_pred             CCCCCchhhcCCccEEEEcCCCHH--------HHHHHHHHHHhccCCccEEEeee
Q 020565          112 DLSSLDGEFYDKFDVVVVSCCSVT--------TKKLINEKCRKLSKRVAFYTVDC  158 (324)
Q Consensus       112 ~~~~~~~~~~~~~diVi~~~~~~~--------~~~~l~~~~~~~~~~ip~i~~~~  158 (324)
                                   .-|-.|...++        ....+.++|++  .+.++|+.++
T Consensus        61 -------------t~vD~aE~~~e~A~~vNa~~~~~lA~aa~~--~ga~lVhiST  100 (281)
T COG1091          61 -------------TAVDKAESEPELAFAVNATGAENLARAAAE--VGARLVHIST  100 (281)
T ss_pred             -------------cccccccCCHHHHHHhHHHHHHHHHHHHHH--hCCeEEEeec
Confidence                         11222222323        23456689999  8999998874

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=92.10  E-value=0.23  Score=47.65  Aligned_cols=44  Identities=9%  Similarity=0.169  Sum_probs=35.4

Q ss_pred             cCcEEEEcCchhHHHHHHHHHHh-CCCcEEEEcCCccccccCCCC
Q 020565           31 KSHILVCGMKGTVAEFCKNIVLA-GVGSLTLMDDRVVTEEAWSAN   74 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~~~-Gv~~i~lvD~d~v~~~nl~r~   74 (324)
                      ...|+|||.|-+|+.+|..|++. |..+++|+|.+.+.....+++
T Consensus        30 ~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~~~~gas~~~   74 (407)
T TIGR01373        30 TYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGWLGGGNTGRN   74 (407)
T ss_pred             cCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEcccccCcccccc
Confidence            44699999999999999999985 877799999987654443333

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional

Probab=92.09  E-value=0.37  Score=42.86  Aligned_cols=35  Identities=23%  Similarity=0.340  Sum_probs=29.6

Q ss_pred             HHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        28 ~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      +++..+++|.|+ |++|..+++.|+..|.. +.+++.
T Consensus         4 ~~~~~~vlItGasg~iG~~la~~l~~~G~~-v~~~~r   39 (262)
T PRK13394          4 NLNGKTAVVTGAASGIGKEIALELARAGAA-VAIADL   39 (262)
T ss_pred             cCCCCEEEEECCCChHHHHHHHHHHHCCCe-EEEEeC
Confidence            356788999997 88999999999999985 777665

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=92.08  E-value=0.38  Score=42.76  Aligned_cols=34  Identities=24%  Similarity=0.341  Sum_probs=29.4

Q ss_pred             HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      +++++|+|.|. |++|..+++.|+..|.. +.+.|.
T Consensus         8 ~~~k~vlItGa~g~iG~~ia~~l~~~G~~-V~~~~r   42 (255)
T PRK07523          8 LTGRRALVTGSSQGIGYALAEGLAQAGAE-VILNGR   42 (255)
T ss_pred             CCCCEEEEECCcchHHHHHHHHHHHcCCE-EEEEeC
Confidence            67789999996 88999999999999974 777665

>PRK06138 short chain dehydrogenase; Provisional

Probab=91.99  E-value=0.8  Score=40.39  Aligned_cols=34  Identities=21%  Similarity=0.249  Sum_probs=28.7

Q ss_pred             HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      |++++++|.|+ |++|..+++.|+..|.. +.+++.
T Consensus         3 ~~~k~~lItG~sg~iG~~la~~l~~~G~~-v~~~~r   37 (252)
T PRK06138          3 LAGRVAIVTGAGSGIGRATAKLFAREGAR-VVVADR   37 (252)
T ss_pred             CCCcEEEEeCCCchHHHHHHHHHHHCCCe-EEEecC
Confidence            56789999997 78999999999999964 777654

>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=91.96  E-value=0.41  Score=42.07  Aligned_cols=35  Identities=20%  Similarity=0.358  Sum_probs=29.6

Q ss_pred             HHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        28 ~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      .+++.+++|.|. |++|..+++.|+..|. ++.+++.
T Consensus         4 ~~~~~~vlVtG~sg~iG~~l~~~L~~~G~-~Vi~~~r   39 (239)
T PRK07666          4 SLQGKNALITGAGRGIGRAVAIALAKEGV-NVGLLAR   39 (239)
T ss_pred             cCCCCEEEEEcCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence            356788999995 6899999999999998 6888765

>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional

Probab=91.93  E-value=0.51  Score=41.77  Aligned_cols=34  Identities=24%  Similarity=0.280  Sum_probs=28.3

Q ss_pred             HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      +++++|+|.|. |++|.++++.|+..|.. +.+++.
T Consensus         2 ~~~~~vlItG~sg~iG~~la~~l~~~g~~-v~~~~r   36 (258)
T PRK12429          2 LKGKVALVTGAASGIGLEIALALAKEGAK-VVIADL   36 (258)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCe-EEEEeC
Confidence            45678999995 89999999999999974 677655

>cd08230 glucose_DH Glucose dehydrogenase

Probab=91.92  E-value=1  Score=42.30  Aligned_cols=33  Identities=15%  Similarity=0.120  Sum_probs=28.9

Q ss_pred             hcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        30 ~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      ...+|+|+|+|++|..++..+...|. +++.++.
T Consensus       172 ~g~~vlI~G~G~vG~~a~q~ak~~G~-~vi~~~~  204 (355)
T cd08230         172 NPRRALVLGAGPIGLLAALLLRLRGF-EVYVLNR  204 (355)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEec
Confidence            56899999999999999999999998 4777765

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase

Probab=91.92  E-value=0.99  Score=43.33  Aligned_cols=33  Identities=15%  Similarity=0.174  Sum_probs=27.1

Q ss_pred             hcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           30 SKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        30 ~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      +..+|+|.|. |.+|+.+++.|...|.. +++++.
T Consensus        59 ~~~kVLVtGatG~IG~~l~~~Ll~~G~~-V~~l~R   92 (390)
T PLN02657         59 KDVTVLVVGATGYIGKFVVRELVRRGYN-VVAVAR   92 (390)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEEe
Confidence            4568999996 88999999999999974 666654

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=91.91  E-value=0.4  Score=44.45  Aligned_cols=34  Identities=18%  Similarity=0.056  Sum_probs=31.4

Q ss_pred             hcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        30 ~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      ..++|||+|+|++|--....+-..|..++.++|-
T Consensus       169 ~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~  202 (354)
T KOG0024|consen  169 KGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDL  202 (354)
T ss_pred             cCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeec
Confidence            4688999999999999999999999999999886

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=91.89  E-value=0.86  Score=48.60  Aligned_cols=38  Identities=21%  Similarity=0.276  Sum_probs=33.7

Q ss_pred             HhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccc
Q 020565           29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVT   67 (324)
Q Consensus        29 l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~   67 (324)
                      -...+|+|||.|+.|-++|..|++.|.. ++++|...++
T Consensus       381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh~-Vtv~E~~~i~  418 (1028)
T PRK06567        381 PTNYNILVTGLGPAGFSLSYYLLRSGHN-VTAIDGLKIT  418 (1028)
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHhCCCe-EEEEcccccc
Confidence            3677999999999999999999999987 9999986554

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=91.86  E-value=0.8  Score=45.41  Aligned_cols=33  Identities=24%  Similarity=0.240  Sum_probs=29.3

Q ss_pred             hcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        30 ~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      .+++|+|+|+|..|..+++.|...|. ++++.|.
T Consensus        11 ~~~~v~V~G~G~sG~aa~~~L~~~G~-~v~~~D~   43 (488)
T PRK03369         11 PGAPVLVAGAGVTGRAVLAALTRFGA-RPTVCDD   43 (488)
T ss_pred             CCCeEEEEcCCHHHHHHHHHHHHCCC-EEEEEcC
Confidence            56799999999999999999999996 5888875

>PRK08339 short chain dehydrogenase; Provisional

Probab=91.83  E-value=0.74  Score=41.36  Aligned_cols=34  Identities=21%  Similarity=0.248  Sum_probs=29.1

Q ss_pred             HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      |++++++|.|+ ||+|.++++.|+..|.. +.++|.
T Consensus         6 l~~k~~lItGas~gIG~aia~~l~~~G~~-V~~~~r   40 (263)
T PRK08339          6 LSGKLAFTTASSKGIGFGVARVLARAGAD-VILLSR   40 (263)
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHHHHCCCE-EEEEeC
Confidence            56788999997 68999999999999975 777765

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=91.77  E-value=0.95  Score=45.70  Aligned_cols=34  Identities=12%  Similarity=0.124  Sum_probs=30.8

Q ss_pred             hcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (324)
Q Consensus        30 ~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d   64 (324)
                      ...+|+|||+|..|...|..|.+.|.. ++++|..
T Consensus       136 ~g~~V~VIGaGpaGL~aA~~l~~~G~~-V~v~e~~  169 (564)
T PRK12771        136 TGKRVAVIGGGPAGLSAAYHLRRMGHA-VTIFEAG  169 (564)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCe-EEEEecC
Confidence            567899999999999999999999985 9999864

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=91.74  E-value=3.1  Score=37.25  Aligned_cols=33  Identities=12%  Similarity=0.078  Sum_probs=25.9

Q ss_pred             hcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (324)
Q Consensus        30 ~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d   64 (324)
                      ...+|+-+|||+ |. ++..+++.|.++++-+|.+
T Consensus       119 ~~~~VLDiGcGs-G~-l~i~~~~~g~~~v~giDis  151 (250)
T PRK00517        119 PGKTVLDVGCGS-GI-LAIAAAKLGAKKVLAVDID  151 (250)
T ss_pred             CCCEEEEeCCcH-HH-HHHHHHHcCCCeEEEEECC
Confidence            678999999997 74 4556778888888888873

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=91.73  E-value=1.1  Score=46.49  Aligned_cols=32  Identities=16%  Similarity=0.039  Sum_probs=29.0

Q ss_pred             CcEEEEcCchhHHHHHHHHH-HhCCCcEEEEcCC
Q 020565           32 SHILVCGMKGTVAEFCKNIV-LAGVGSLTLMDDR   64 (324)
Q Consensus        32 ~~VliiG~g~lGsei~k~L~-~~Gv~~i~lvD~d   64 (324)
                      ++|.|||+|..|+.+|..++ .+|+. ++++|.+
T Consensus       310 ~~v~ViGaG~mG~giA~~~a~~~G~~-V~l~d~~  342 (708)
T PRK11154        310 NKVGVLGGGLMGGGIAYVTATKAGLP-VRIKDIN  342 (708)
T ss_pred             cEEEEECCchhhHHHHHHHHHHcCCe-EEEEeCC
Confidence            57999999999999999999 88986 9999874

>PLN02858 fructose-bisphosphate aldolase

Probab=91.67  E-value=1.1  Score=49.88  Aligned_cols=115  Identities=11%  Similarity=0.141  Sum_probs=69.3

Q ss_pred             cCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEee
Q 020565           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEK  110 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~  110 (324)
                      ..+|.+||+|.+|..++.||++.|.. ++++|...-..+.+..        .   |-..+....+..+.  .++-+....
T Consensus         4 ~~~IGfIGLG~MG~~mA~~L~~~G~~-v~v~dr~~~~~~~l~~--------~---Ga~~~~s~~e~a~~--advVi~~l~   69 (1378)
T PLN02858          4 AGVVGFVGLDSLSFELASSLLRSGFK-VQAFEISTPLMEKFCE--------L---GGHRCDSPAEAAKD--AAALVVVLS   69 (1378)
T ss_pred             CCeEEEEchhHHHHHHHHHHHHCCCe-EEEEcCCHHHHHHHHH--------c---CCeecCCHHHHHhc--CCEEEEEcC
Confidence            46799999999999999999999975 8888764322222211        1   32223222222221  222222222


Q ss_pred             CC--CCCC---ch---hhcCCccEEEEcC-CCHHHHHHHHHHHHhccCC--ccEEEeeecCc
Q 020565          111 GD--LSSL---DG---EFYDKFDVVVVSC-CSVTTKKLINEKCRKLSKR--VAFYTVDCRDS  161 (324)
Q Consensus       111 ~~--~~~~---~~---~~~~~~diVi~~~-~~~~~~~~l~~~~~~~~~~--ip~i~~~~~G~  161 (324)
                      ..  ..+.   ..   ..+..-.+||+++ -++.+...+.+.+.+  ++  +.|+++.+.|.
T Consensus        70 ~~~~v~~V~~g~~g~~~~l~~g~iivd~STi~p~~~~~la~~l~~--~g~~~~~lDaPVsGg  129 (1378)
T PLN02858         70 HPDQVDDVFFGDEGAAKGLQKGAVILIRSTILPLQLQKLEKKLTE--RKEQIFLVDAYVSKG  129 (1378)
T ss_pred             ChHHHHHHHhchhhHHhcCCCcCEEEECCCCCHHHHHHHHHHHHh--cCCceEEEEccCcCC
Confidence            11  0110   01   1123345777665 578888899999988  78  88999988875

>PLN02214 cinnamoyl-CoA reductase

Probab=91.58  E-value=1.9  Score=40.38  Aligned_cols=33  Identities=12%  Similarity=0.004  Sum_probs=27.3

Q ss_pred             HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEc
Q 020565           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMD   62 (324)
Q Consensus        29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD   62 (324)
                      ++.++|+|.|+ |.+|+.+++.|...|.. ++.++
T Consensus         8 ~~~~~vlVTGatGfIG~~l~~~L~~~G~~-V~~~~   41 (342)
T PLN02214          8 PAGKTVCVTGAGGYIASWIVKILLERGYT-VKGTV   41 (342)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCcCE-EEEEe
Confidence            45678999997 88999999999999974 55544

>PRK07814 short chain dehydrogenase; Provisional

Probab=91.55  E-value=0.63  Score=41.67  Aligned_cols=34  Identities=21%  Similarity=0.287  Sum_probs=29.3

Q ss_pred             HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      +++.+++|.|. |++|..+++.|+..|. ++.+++.
T Consensus         8 ~~~~~vlItGasggIG~~~a~~l~~~G~-~Vi~~~r   42 (263)
T PRK07814          8 LDDQVAVVTGAGRGLGAAIALAFAEAGA-DVLIAAR   42 (263)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeC
Confidence            56788999996 5799999999999998 6877765

>PRK12746 short chain dehydrogenase; Provisional

Probab=91.55  E-value=0.34  Score=42.97  Aligned_cols=33  Identities=18%  Similarity=0.292  Sum_probs=27.2

Q ss_pred             HHHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEE
Q 020565           27 RRLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTL   60 (324)
Q Consensus        27 ~~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~l   60 (324)
                      +++++++++|.|+ |++|+++++.|+..|.. +.+
T Consensus         2 ~~~~~~~ilItGasg~iG~~la~~l~~~G~~-v~i   35 (254)
T PRK12746          2 KNLDGKVALVTGASRGIGRAIAMRLANDGAL-VAI   35 (254)
T ss_pred             CCCCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEE
Confidence            3467789999995 78999999999999975 444

>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity

Probab=91.54  E-value=0.68  Score=43.04  Aligned_cols=33  Identities=9%  Similarity=0.076  Sum_probs=29.3

Q ss_pred             CcEEEEcC-chhHHHHHHHHHHhCCC-cEEEEcCC
Q 020565           32 SHILVCGM-KGTVAEFCKNIVLAGVG-SLTLMDDR   64 (324)
Q Consensus        32 ~~VliiG~-g~lGsei~k~L~~~Gv~-~i~lvD~d   64 (324)
                      .+|.|+|+ |.+|+.++..|+..|+. +++++|..
T Consensus         1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~   35 (309)
T cd05294           1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRP   35 (309)
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECc
Confidence            37999998 99999999999999975 69999983

The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox

>PRK12937 short chain dehydrogenase; Provisional

Probab=91.51  E-value=0.54  Score=41.30  Aligned_cols=32  Identities=22%  Similarity=0.405  Sum_probs=26.8

Q ss_pred             HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEE
Q 020565           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLM   61 (324)
Q Consensus        29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lv   61 (324)
                      +++++|+|.|+ |++|..+++.|+..|.. +.++
T Consensus         3 ~~~~~vlItG~~~~iG~~la~~l~~~g~~-v~~~   35 (245)
T PRK12937          3 LSNKVAIVTGASRGIGAAIARRLAADGFA-VAVN   35 (245)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEe
Confidence            46788999996 89999999999999985 4444

>PLN00141 Tic62-NAD(P)-related group II protein; Provisional

Probab=91.44  E-value=1.6  Score=38.88  Aligned_cols=33  Identities=12%  Similarity=0.248  Sum_probs=26.7

Q ss_pred             HHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEE
Q 020565           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLM   61 (324)
Q Consensus        28 ~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lv   61 (324)
                      .....+|+|+|+ |.+|..+++.|+..|.. ++.+
T Consensus        14 ~~~~~~ilItGasG~iG~~l~~~L~~~g~~-V~~~   47 (251)
T PLN00141         14 NVKTKTVFVAGATGRTGKRIVEQLLAKGFA-VKAG   47 (251)
T ss_pred             cccCCeEEEECCCcHHHHHHHHHHHhCCCE-EEEE
Confidence            345678999996 88999999999999865 5443

>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional

Probab=91.41  E-value=1.3  Score=39.38  Aligned_cols=32  Identities=19%  Similarity=0.252  Sum_probs=27.0

Q ss_pred             cCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           31 KSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        31 ~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      +++|+|.|. |++|.++++.|+..|. ++.++|.
T Consensus         2 ~k~ilItG~~~~IG~~la~~l~~~g~-~vi~~~r   34 (259)
T PRK12384          2 NQVAVVIGGGQTLGAFLCHGLAEEGY-RVAVADI   34 (259)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEEC
Confidence            457999996 6899999999999997 4778775

>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=91.41  E-value=0.47  Score=41.52  Aligned_cols=31  Identities=23%  Similarity=0.309  Sum_probs=25.8

Q ss_pred             HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEE
Q 020565           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTL   60 (324)
Q Consensus        29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~l   60 (324)
                      ++.++|+|.|+ |++|.++++.|+..|.. +++
T Consensus         4 ~~~~~vlItGasg~iG~~l~~~l~~~g~~-v~~   35 (249)
T PRK12825          4 LMGRVALVTGAARGLGRAIALRLARAGAD-VVV   35 (249)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCe-EEE
Confidence            45678999995 88999999999999986 444

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=91.41  E-value=1.1  Score=46.22  Aligned_cols=59  Identities=19%  Similarity=0.266  Sum_probs=40.9

Q ss_pred             CCCHHHHHHhHHHHHh---hhHH-HHHHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565            5 ELTEQETALYDRQIRV---WGAD-AQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (324)
Q Consensus         5 ~l~~~e~~ry~Rqi~l---~g~~-~q~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d   64 (324)
                      +++--.++||--....   |... .+..-...+|+|||.|..|-..|..|++.|.. ++++|..
T Consensus       297 ~v~I~~l~r~~~d~~~~~~~~~~~~~~~~~~~~VaIIGaGpAGLsaA~~L~~~G~~-V~V~E~~  359 (654)
T PRK12769        297 AVTIGNIERYISDQALAKGWRPDLSQVTKSDKRVAIIGAGPAGLACADVLARNGVA-VTVYDRH  359 (654)
T ss_pred             CeecCHHHHHHHHHHHHhCCCCCCcccccCCCEEEEECCCHHHHHHHHHHHHCCCe-EEEEecC
Confidence            4555566777533322   2110 01113567999999999999999999999986 9999874

>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional

Probab=91.39  E-value=0.23  Score=47.49  Aligned_cols=35  Identities=14%  Similarity=0.197  Sum_probs=32.0

Q ss_pred             HHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565           28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        28 ~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      .|..++|.|||+|.+|+.+++.|...|+. +..+|+
T Consensus       113 ~L~gktvGIIG~G~IG~~vA~~l~a~G~~-V~~~dp  147 (378)
T PRK15438        113 SLHDRTVGIVGVGNVGRRLQARLEALGIK-TLLCDP  147 (378)
T ss_pred             CcCCCEEEEECcCHHHHHHHHHHHHCCCE-EEEECC
Confidence            58999999999999999999999999986 777886

>PRK06125 short chain dehydrogenase; Provisional

Probab=91.36  E-value=1.1  Score=39.81  Aligned_cols=34  Identities=26%  Similarity=0.420  Sum_probs=29.7

Q ss_pred             HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      +++++++|.|+ |++|.++++.|+..|. ++.+++.
T Consensus         5 ~~~k~vlItG~~~giG~~ia~~l~~~G~-~V~~~~r   39 (259)
T PRK06125          5 LAGKRVLITGASKGIGAAAAEAFAAEGC-HLHLVAR   39 (259)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeC
Confidence            56789999997 6899999999999998 6888765

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=91.35  E-value=1.1  Score=42.10  Aligned_cols=85  Identities=11%  Similarity=0.060  Sum_probs=53.5

Q ss_pred             cCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEee
Q 020565           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEK  110 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~  110 (324)
                      ..+|+|+|+||+|.-.++....+| .+++.+|.                      +..|.+.+++    +--+.-+...+
T Consensus       167 G~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~----------------------~~~K~e~a~~----lGAd~~i~~~~  219 (339)
T COG1064         167 GKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITR----------------------SEEKLELAKK----LGADHVINSSD  219 (339)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeC----------------------ChHHHHHHHH----hCCcEEEEcCC
Confidence            578999999999999999999999 67888776                      5556554433    32222222211


Q ss_pred             CCCCCCchhhcCCccEEEEcCCCHHHHHHHHHHHHh
Q 020565          111 GDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRK  146 (324)
Q Consensus       111 ~~~~~~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~  146 (324)
                      .+.   ....-+.+|+||++.. ..+....-+.++.
T Consensus       220 ~~~---~~~~~~~~d~ii~tv~-~~~~~~~l~~l~~  251 (339)
T COG1064         220 SDA---LEAVKEIADAIIDTVG-PATLEPSLKALRR  251 (339)
T ss_pred             chh---hHHhHhhCcEEEECCC-hhhHHHHHHHHhc
Confidence            111   1111123999999988 5544444455555

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=91.34  E-value=1.5  Score=42.96  Aligned_cols=60  Identities=10%  Similarity=0.142  Sum_probs=41.3

Q ss_pred             CCCCHHHHHHhHHHHHh-hhHHH---HHHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565            4 EELTEQETALYDRQIRV-WGADA---QRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (324)
Q Consensus         4 ~~l~~~e~~ry~Rqi~l-~g~~~---q~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d   64 (324)
                      .+++--.++||....-. .|...   -..-+..+|+|||.|..|.+.|..|++.|.. ++++|..
T Consensus       102 ~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~V~IIG~G~aGl~aA~~l~~~G~~-V~vie~~  165 (449)
T TIGR01316       102 KPVSIGALERFVADWERQHGIETEPEKAPSTHKKVAVIGAGPAGLACASELAKAGHS-VTVFEAL  165 (449)
T ss_pred             CCccHHHHHHHHHhHHHhcCCCcCCCCCCCCCCEEEEECcCHHHHHHHHHHHHCCCc-EEEEecC
Confidence            45666667777543211 12110   0123467899999999999999999999985 9999974

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PRK06194 hypothetical protein; Provisional

Probab=91.32  E-value=0.58  Score=42.36  Aligned_cols=34  Identities=21%  Similarity=0.260  Sum_probs=29.0

Q ss_pred             HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      +++.+|+|.|. |++|.++++.|+..|.. ++++|.
T Consensus         4 ~~~k~vlVtGasggIG~~la~~l~~~G~~-V~~~~r   38 (287)
T PRK06194          4 FAGKVAVITGAASGFGLAFARIGAALGMK-LVLADV   38 (287)
T ss_pred             CCCCEEEEeCCccHHHHHHHHHHHHCCCE-EEEEeC
Confidence            45678999995 78999999999999974 888765

>PRK07774 short chain dehydrogenase; Provisional

Probab=91.31  E-value=0.66  Score=40.91  Aligned_cols=34  Identities=15%  Similarity=0.309  Sum_probs=29.3

Q ss_pred             HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      +++++++|.|. |++|..+++.|+..|.. +.++|.
T Consensus         4 ~~~k~vlItGasg~iG~~la~~l~~~g~~-vi~~~r   38 (250)
T PRK07774          4 FDDKVAIVTGAAGGIGQAYAEALAREGAS-VVVADI   38 (250)
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEeC
Confidence            56788999997 89999999999999964 777765

>PRK07102 short chain dehydrogenase; Provisional

Probab=91.30  E-value=1.3  Score=38.95  Aligned_cols=31  Identities=23%  Similarity=0.319  Sum_probs=26.5

Q ss_pred             CcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           32 SHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        32 ~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      ++|+|.|+ |++|..+++.|+..|.. ++++|.
T Consensus         2 ~~vlItGas~giG~~~a~~l~~~G~~-Vi~~~r   33 (243)
T PRK07102          2 KKILIIGATSDIARACARRYAAAGAR-LYLAAR   33 (243)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHhcCCE-EEEEeC
Confidence            47899995 89999999999999974 777766

>PRK07453 protochlorophyllide oxidoreductase; Validated

Probab=91.27  E-value=0.43  Score=44.27  Aligned_cols=34  Identities=15%  Similarity=0.190  Sum_probs=28.1

Q ss_pred             HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      +..++|+|.|. |++|.++++.|+..|. ++.+++.
T Consensus         4 ~~~k~vlVTGas~gIG~~~a~~L~~~G~-~V~~~~r   38 (322)
T PRK07453          4 DAKGTVIITGASSGVGLYAAKALAKRGW-HVIMACR   38 (322)
T ss_pred             CCCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEEC
Confidence            35678999996 7899999999999995 4777764

>PRK12829 short chain dehydrogenase; Provisional

Probab=91.26  E-value=0.88  Score=40.42  Aligned_cols=37  Identities=22%  Similarity=0.276  Sum_probs=31.6

Q ss_pred             HHHHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           26 QRRLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        26 q~~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      ...+++.+++|.|+ |++|..+++.|+..|.. +++++.
T Consensus         6 ~~~~~~~~vlItGa~g~iG~~~a~~L~~~g~~-V~~~~r   43 (264)
T PRK12829          6 LKPLDGLRVLVTGGASGIGRAIAEAFAEAGAR-VHVCDV   43 (264)
T ss_pred             hhccCCCEEEEeCCCCcHHHHHHHHHHHCCCE-EEEEeC
Confidence            34578899999996 78999999999999986 777764

>CHL00194 ycf39 Ycf39; Provisional

Probab=91.25  E-value=1.9  Score=39.86  Aligned_cols=30  Identities=13%  Similarity=0.165  Sum_probs=25.1

Q ss_pred             cEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           33 HILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        33 ~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      +|+|.|+ |-+|+.+++.|...|.. ++.++.
T Consensus         2 kIlVtGatG~iG~~lv~~Ll~~g~~-V~~l~R   32 (317)
T CHL00194          2 SLLVIGATGTLGRQIVRQALDEGYQ-VRCLVR   32 (317)
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCe-EEEEEc
Confidence            6999996 77999999999999964 666544

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=91.21  E-value=0.93  Score=48.64  Aligned_cols=95  Identities=12%  Similarity=0.023  Sum_probs=55.1

Q ss_pred             hcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEe
Q 020565           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVE  109 (324)
Q Consensus        30 ~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~  109 (324)
                      ..++|+|||+|..|...|..|++.|.. +|++|..    +.++...-+.-.+. ...+.-.+.-.+.++++.  +++...
T Consensus       305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~-VtVfE~~----~~~GG~l~yGIP~~-rlp~~vi~~~i~~l~~~G--v~f~~n  376 (944)
T PRK12779        305 VKPPIAVVGSGPSGLINAYLLAVEGFP-VTVFEAF----HDLGGVLRYGIPEF-RLPNQLIDDVVEKIKLLG--GRFVKN  376 (944)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCe-EEEEeeC----CCCCceEEccCCCC-cChHHHHHHHHHHHHhhc--CeEEEe
Confidence            478999999999999999999999985 9999863    23333322221111 002222223333444443  443321


Q ss_pred             eCCCC-C-CchhhcC-CccEEEEcCCC
Q 020565          110 KGDLS-S-LDGEFYD-KFDVVVVSCCS  133 (324)
Q Consensus       110 ~~~~~-~-~~~~~~~-~~diVi~~~~~  133 (324)
                      .. +. . ..+++.+ +||.||.++..
T Consensus       377 ~~-vG~dit~~~l~~~~yDAV~LAtGA  402 (944)
T PRK12779        377 FV-VGKTATLEDLKAAGFWKIFVGTGA  402 (944)
T ss_pred             EE-eccEEeHHHhccccCCEEEEeCCC
Confidence            11 11 1 1233343 69999998875

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=91.16  E-value=1.2  Score=46.48  Aligned_cols=32  Identities=22%  Similarity=0.129  Sum_probs=29.4

Q ss_pred             CcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (324)
Q Consensus        32 ~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d   64 (324)
                      .+|.|||+|..|+.||..++.+|+. ++++|.+
T Consensus       336 ~~v~ViGaG~MG~gIA~~~a~~G~~-V~l~d~~  367 (737)
T TIGR02441       336 KTLAVLGAGLMGAGIAQVSVDKGLK-TVLKDAT  367 (737)
T ss_pred             cEEEEECCCHhHHHHHHHHHhCCCc-EEEecCC
Confidence            4699999999999999999999986 9999875

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed

Probab=91.11  E-value=0.66  Score=48.18  Aligned_cols=39  Identities=15%  Similarity=0.313  Sum_probs=35.9

Q ss_pred             HHHhcCcEEEEcCchhHHHHHHHHHHhCCC--cEEEEcCCc
Q 020565           27 RRLSKSHILVCGMKGTVAEFCKNIVLAGVG--SLTLMDDRV   65 (324)
Q Consensus        27 ~~l~~~~VliiG~g~lGsei~k~L~~~Gv~--~i~lvD~d~   65 (324)
                      ++|.+.||++.|+|+.|..+++.|...|+.  +|.++|..-
T Consensus       181 ~~~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~~~D~~G  221 (752)
T PRK07232        181 KKIEDVKIVVSGAGAAAIACLNLLVALGAKKENIIVCDSKG  221 (752)
T ss_pred             CChhhcEEEEECccHHHHHHHHHHHHcCCCcccEEEEcCCC
Confidence            688999999999999999999999999995  899999854

>PLN02989 cinnamyl-alcohol dehydrogenase family protein

Probab=91.08  E-value=2.9  Score=38.58  Aligned_cols=31  Identities=13%  Similarity=0.097  Sum_probs=25.5

Q ss_pred             cCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEc
Q 020565           31 KSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMD   62 (324)
Q Consensus        31 ~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD   62 (324)
                      +++|+|.|. |.+|+.+++.|+..|.. +++++
T Consensus         5 ~k~vlVtG~~G~IG~~l~~~L~~~G~~-V~~~~   36 (325)
T PLN02989          5 GKVVCVTGASGYIASWIVKLLLFRGYT-INATV   36 (325)
T ss_pred             CCEEEEECCchHHHHHHHHHHHHCCCE-EEEEE
Confidence            468999995 88999999999999975 55543

>PRK06940 short chain dehydrogenase; Provisional

Probab=91.07  E-value=0.66  Score=42.04  Aligned_cols=31  Identities=26%  Similarity=0.359  Sum_probs=25.9

Q ss_pred             cCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      ++.++|.|+||+|.++++.|+ .|. ++.++|.
T Consensus         2 ~k~~lItGa~gIG~~la~~l~-~G~-~Vv~~~r   32 (275)
T PRK06940          2 KEVVVVIGAGGIGQAIARRVG-AGK-KVLLADY   32 (275)
T ss_pred             CCEEEEECCChHHHHHHHHHh-CCC-EEEEEeC
Confidence            467899999999999999996 785 5777765

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=91.02  E-value=2  Score=38.88  Aligned_cols=77  Identities=14%  Similarity=0.170  Sum_probs=44.2

Q ss_pred             hcCcEEEEcCchhHHHHHHHHHHhCCC-cEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeE
Q 020565           30 SKSHILVCGMKGTVAEFCKNIVLAGVG-SLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV  108 (324)
Q Consensus        30 ~~~~VliiG~g~lGsei~k~L~~~Gv~-~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~  108 (324)
                      ...+|+.+|||+ |..+.......|.. +++-+|.                      ...+.+.+.++....... +++.
T Consensus        77 ~g~~VLDiG~G~-G~~~~~~a~~~g~~~~v~gvD~----------------------s~~~l~~A~~~~~~~g~~-~v~~  132 (272)
T PRK11873         77 PGETVLDLGSGG-GFDCFLAARRVGPTGKVIGVDM----------------------TPEMLAKARANARKAGYT-NVEF  132 (272)
T ss_pred             CCCEEEEeCCCC-CHHHHHHHHHhCCCCEEEEECC----------------------CHHHHHHHHHHHHHcCCC-CEEE
Confidence            567999999997 87665555555653 6888876                      333455555555544321 3444


Q ss_pred             eeCCCCCCchhhcCCccEEEEcC
Q 020565          109 EKGDLSSLDGEFYDKFDVVVVSC  131 (324)
Q Consensus       109 ~~~~~~~~~~~~~~~~diVi~~~  131 (324)
                      ...++.+.... -..||+|+...
T Consensus       133 ~~~d~~~l~~~-~~~fD~Vi~~~  154 (272)
T PRK11873        133 RLGEIEALPVA-DNSVDVIISNC  154 (272)
T ss_pred             EEcchhhCCCC-CCceeEEEEcC
Confidence            44444322100 13689998654

>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional

Probab=91.02  E-value=0.56  Score=41.36  Aligned_cols=28  Identities=21%  Similarity=0.274  Sum_probs=24.1

Q ss_pred             HhcCcEEEEcC-chhHHHHHHHHHHhCCC
Q 020565           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVG   56 (324)
Q Consensus        29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~   56 (324)
                      |...+++|.|. |++|.++++.|+..|..
T Consensus         2 ~~~~~vlItGa~g~iG~~~a~~l~~~g~~   30 (250)
T PRK08063          2 FSGKVALVTGSSRGIGKAIALRLAEEGYD   30 (250)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCE
Confidence            34578999996 78999999999999976

>PRK06914 short chain dehydrogenase; Provisional

Probab=91.02  E-value=1.2  Score=40.01  Aligned_cols=33  Identities=15%  Similarity=0.040  Sum_probs=27.1

Q ss_pred             hcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           30 SKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        30 ~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      ++.+++|.|+ |++|..+++.|+..|.. +++++.
T Consensus         2 ~~k~~lItGasg~iG~~la~~l~~~G~~-V~~~~r   35 (280)
T PRK06914          2 NKKIAIVTGASSGFGLLTTLELAKKGYL-VIATMR   35 (280)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHhCCCE-EEEEeC
Confidence            4567899995 78999999999999975 666655

>PLN02852 ferredoxin-NADP+ reductase

Probab=91.01  E-value=0.98  Score=44.79  Aligned_cols=35  Identities=11%  Similarity=0.165  Sum_probs=30.2

Q ss_pred             hcCcEEEEcCchhHHHHHHHHHH--hCCCcEEEEcCCc
Q 020565           30 SKSHILVCGMKGTVAEFCKNIVL--AGVGSLTLMDDRV   65 (324)
Q Consensus        30 ~~~~VliiG~g~lGsei~k~L~~--~Gv~~i~lvD~d~   65 (324)
                      ...+|+|||.|.-|.+.|..|+.  .|. +++|+|...
T Consensus        25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~-~Vtv~E~~p   61 (491)
T PLN02852         25 EPLHVCVVGSGPAGFYTADKLLKAHDGA-RVDIIERLP   61 (491)
T ss_pred             CCCcEEEECccHHHHHHHHHHHhhCCCC-eEEEEecCC
Confidence            45789999999999999999997  576 599999754

>TIGR00417 speE spermidine synthase

Probab=91.00  E-value=1.2  Score=40.46  Aligned_cols=31  Identities=26%  Similarity=0.317  Sum_probs=21.4

Q ss_pred             cCcEEEEcCchhHHHHHHHHHHh-CCCcEEEEcC
Q 020565           31 KSHILVCGMKGTVAEFCKNIVLA-GVGSLTLMDD   63 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~~~-Gv~~i~lvD~   63 (324)
                      ..+||++|+|+ |. +++.++.. ++.+++++|-
T Consensus        73 p~~VL~iG~G~-G~-~~~~ll~~~~~~~v~~vei  104 (270)
T TIGR00417        73 PKHVLVIGGGD-GG-VLREVLKHKSVEKATLVDI  104 (270)
T ss_pred             CCEEEEEcCCc-hH-HHHHHHhCCCcceEEEEeC
Confidence            45999999985 44 33444444 4788999877

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>PRK08277 D-mannonate oxidoreductase; Provisional

Probab=91.00  E-value=0.72  Score=41.57  Aligned_cols=35  Identities=17%  Similarity=0.253  Sum_probs=30.0

Q ss_pred             HHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        28 ~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      .+++++++|.|. |++|.++++.|+..|.. +.++|.
T Consensus         7 ~~~~k~vlVtGas~giG~~ia~~l~~~G~~-V~~~~r   42 (278)
T PRK08277          7 SLKGKVAVITGGGGVLGGAMAKELARAGAK-VAILDR   42 (278)
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEeC
Confidence            367788999996 78999999999999984 877765

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=90.97  E-value=1.2  Score=41.82  Aligned_cols=33  Identities=12%  Similarity=-0.073  Sum_probs=27.4

Q ss_pred             cCcEEEEcCchhHHHHHHHHHH-hCCCcEEEEcC
Q 020565           31 KSHILVCGMKGTVAEFCKNIVL-AGVGSLTLMDD   63 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~~-~Gv~~i~lvD~   63 (324)
                      ..+|+|+|+|++|..++..+.+ .|..+++.+|.
T Consensus       164 g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~  197 (341)
T cd08237         164 RNVIGVWGDGNLGYITALLLKQIYPESKLVVFGK  197 (341)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeC
Confidence            5789999999999998888875 57667888775

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=90.95  E-value=1.3  Score=41.96  Aligned_cols=33  Identities=21%  Similarity=0.237  Sum_probs=28.7

Q ss_pred             cCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      ..+|+|.|+|++|..++..+...|..++..+|.
T Consensus       192 g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~  224 (371)
T cd08281         192 GQSVAVVGLGGVGLSALLGAVAAGASQVVAVDL  224 (371)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcC
Confidence            468999999999999999888999977877765

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>PRK06198 short chain dehydrogenase; Provisional

Probab=90.89  E-value=0.69  Score=41.11  Aligned_cols=37  Identities=24%  Similarity=0.330  Sum_probs=31.7

Q ss_pred             HHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCC
Q 020565           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDR   64 (324)
Q Consensus        28 ~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d   64 (324)
                      .+++++|+|.|+ |++|..+++.|+..|..++.+++.+
T Consensus         3 ~~~~k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~   40 (260)
T PRK06198          3 RLDGKVALVTGGTQGLGAAIARAFAERGAAGLVICGRN   40 (260)
T ss_pred             CCCCcEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCC
Confidence            367889999996 7899999999999998778887763

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=90.87  E-value=1.5  Score=40.69  Aligned_cols=34  Identities=15%  Similarity=0.072  Sum_probs=29.6

Q ss_pred             hcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        30 ~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      ...+|+|.|+|++|..++..+...|.++++.+|.
T Consensus       163 ~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~  196 (339)
T cd08239         163 GRDTVLVVGAGPVGLGALMLARALGAEDVIGVDP  196 (339)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECC
Confidence            3679999999999999999999999986777765

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>PLN02366 spermidine synthase

Probab=90.83  E-value=1.2  Score=41.36  Aligned_cols=55  Identities=18%  Similarity=0.221  Sum_probs=32.1

Q ss_pred             CCHHHHHHhHHHHHhhhHHHHHHHhcCcEEEEcCchhHHHHHHHHHH-hCCCcEEEEcCC
Q 020565            6 LTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVL-AGVGSLTLMDDR   64 (324)
Q Consensus         6 l~~~e~~ry~Rqi~l~g~~~q~~l~~~~VliiG~g~lGsei~k~L~~-~Gv~~i~lvD~d   64 (324)
                      +|+.+.-.|.+-+--......  =...+||+||+|+ |. ++..+++ .++.+++++|-|
T Consensus        69 ~~~~de~~Y~e~l~h~~l~~~--~~pkrVLiIGgG~-G~-~~rellk~~~v~~V~~VEiD  124 (308)
T PLN02366         69 LTERDECAYQEMITHLPLCSI--PNPKKVLVVGGGD-GG-VLREIARHSSVEQIDICEID  124 (308)
T ss_pred             ecCccHHHHHHHHHHHHHhhC--CCCCeEEEEcCCc-cH-HHHHHHhCCCCCeEEEEECC
Confidence            444444567544332222211  2367899999985 44 3344444 468899998864

>PRK00257 erythronate-4-phosphate dehydrogenase; Validated

Probab=90.82  E-value=0.28  Score=47.00  Aligned_cols=36  Identities=14%  Similarity=0.084  Sum_probs=32.4

Q ss_pred             HHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565           27 RRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        27 ~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      ..|+.++|.|||+|.+|..+++.|...|+. +..+|+
T Consensus       112 ~~l~gktvGIIG~G~IG~~va~~l~a~G~~-V~~~Dp  147 (381)
T PRK00257        112 VDLAERTYGVVGAGHVGGRLVRVLRGLGWK-VLVCDP  147 (381)
T ss_pred             CCcCcCEEEEECCCHHHHHHHHHHHHCCCE-EEEECC
Confidence            358899999999999999999999999996 777786

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=90.78  E-value=0.16  Score=45.68  Aligned_cols=56  Identities=14%  Similarity=0.124  Sum_probs=35.5

Q ss_pred             CCHHHHHHhHHHHHhhhHHHHHHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565            6 LTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (324)
Q Consensus         6 l~~~e~~ry~Rqi~l~g~~~q~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d   64 (324)
                      +++.+...|.+.+..+......  +..+|||||.|+ |+.+-..+...++.++++||-|
T Consensus        54 ~~e~de~~y~e~l~h~~~~~~~--~p~~VLiiGgG~-G~~~~ell~~~~~~~i~~VEiD  109 (246)
T PF01564_consen   54 LSERDEFIYHEMLVHPPLLLHP--NPKRVLIIGGGD-GGTARELLKHPPVESITVVEID  109 (246)
T ss_dssp             EETTTHHHHHHHHHHHHHHHSS--ST-EEEEEESTT-SHHHHHHTTSTT-SEEEEEES-
T ss_pred             EEEechHHHHHHHhhhHhhcCC--CcCceEEEcCCC-hhhhhhhhhcCCcceEEEEecC
Confidence            4455556788877665544433  688999999764 5444444445568999998763

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

Probab=90.77  E-value=2.2  Score=40.01  Aligned_cols=89  Identities=16%  Similarity=0.194  Sum_probs=58.6

Q ss_pred             cCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccc---cCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEe
Q 020565           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEE---AWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS  107 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~---nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~  107 (324)
                      ..+|.|+|+|++|-.++.-+..+|.++|.-+|-..-..+   -++..-+++..+.   +     -+.+.++++.+.    
T Consensus       186 G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~fGAT~~vn~~~~---~-----~vv~~i~~~T~g----  253 (366)
T COG1062         186 GDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKFGATHFVNPKEV---D-----DVVEAIVELTDG----  253 (366)
T ss_pred             CCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhcCCceeecchhh---h-----hHHHHHHHhcCC----
Confidence            467999999999999999999999999999987332211   1111112222211   1     122333333221    


Q ss_pred             EeeCCCCCCchhhcCCccEEEEcCCCHHHHHHHHHHHHh
Q 020565          108 VEKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRK  146 (324)
Q Consensus       108 ~~~~~~~~~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~  146 (324)
                                     ..|.+|+|..+.+....--+.|++
T Consensus       254 ---------------G~d~~~e~~G~~~~~~~al~~~~~  277 (366)
T COG1062         254 ---------------GADYAFECVGNVEVMRQALEATHR  277 (366)
T ss_pred             ---------------CCCEEEEccCCHHHHHHHHHHHhc
Confidence                           788999999999977777777877

>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase

Probab=90.74  E-value=1.4  Score=42.87  Aligned_cols=30  Identities=23%  Similarity=0.297  Sum_probs=27.1

Q ss_pred             cEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565           33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        33 ~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      +|+|+|+|+.|..+|+.|...|.. ++..|.
T Consensus         1 ~~~~iG~G~~G~a~a~~l~~~G~~-V~~sD~   30 (433)
T TIGR01087         1 KILILGLGKTGRAVARFLHKKGAE-VTVTDL   30 (433)
T ss_pred             CEEEEEeCHhHHHHHHHHHHCCCE-EEEEeC
Confidence            589999999999999999999985 888775

>PRK07326 short chain dehydrogenase; Provisional

Probab=90.73  E-value=1.1  Score=39.21  Aligned_cols=34  Identities=18%  Similarity=0.274  Sum_probs=28.1

Q ss_pred             HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      +.+.+|+|.|. |++|..+++.|+..|.. +.+++.
T Consensus         4 ~~~~~ilItGatg~iG~~la~~l~~~g~~-V~~~~r   38 (237)
T PRK07326          4 LKGKVALITGGSKGIGFAIAEALLAEGYK-VAITAR   38 (237)
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHHHCCCE-EEEeeC
Confidence            34678999996 78999999999999985 777654

>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed

Probab=90.73  E-value=0.3  Score=47.34  Aligned_cols=32  Identities=19%  Similarity=0.123  Sum_probs=29.1

Q ss_pred             cCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      ..+|+|||.|-+|+++|..|++.|+. ++|+|.
T Consensus         2 ~~dVvVIGGGlAGleAAlaLAr~Gl~-V~LiE~   33 (436)
T PRK05335          2 MKPVNVIGAGLAGSEAAWQLAKRGVP-VELYEM   33 (436)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCc-EEEEEc
Confidence            35799999999999999999999986 899984

>PRK08589 short chain dehydrogenase; Validated

Probab=90.72  E-value=0.6  Score=42.14  Aligned_cols=35  Identities=17%  Similarity=0.202  Sum_probs=29.3

Q ss_pred             HHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        28 ~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      ++++++++|.|+ +|+|.++++.|+..|.. +.+++.
T Consensus         3 ~l~~k~vlItGas~gIG~aia~~l~~~G~~-vi~~~r   38 (272)
T PRK08589          3 RLENKVAVITGASTGIGQASAIALAQEGAY-VLAVDI   38 (272)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEeC
Confidence            366789999997 78999999999999975 777654

>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional

Probab=90.72  E-value=1.1  Score=39.50  Aligned_cols=37  Identities=24%  Similarity=0.285  Sum_probs=31.2

Q ss_pred             HHHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCC
Q 020565           27 RRLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDR   64 (324)
Q Consensus        27 ~~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d   64 (324)
                      ..+++.+|+|.|. |++|..+++.|+..|. ++.++|.+
T Consensus         8 ~~~~~k~vlItG~~g~iG~~la~~l~~~G~-~Vi~~~r~   45 (247)
T PRK08945          8 DLLKDRIILVTGAGDGIGREAALTYARHGA-TVILLGRT   45 (247)
T ss_pred             cccCCCEEEEeCCCchHHHHHHHHHHHCCC-cEEEEeCC
Confidence            4568889999995 7799999999999997 57787764

>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=90.72  E-value=1.1  Score=43.68  Aligned_cols=36  Identities=17%  Similarity=0.195  Sum_probs=29.9

Q ss_pred             HHhc-CcEEEEcCchhHHHHHHHHHHhCC-CcEEEEcC
Q 020565           28 RLSK-SHILVCGMKGTVAEFCKNIVLAGV-GSLTLMDD   63 (324)
Q Consensus        28 ~l~~-~~VliiG~g~lGsei~k~L~~~Gv-~~i~lvD~   63 (324)
                      ++++ .+|+|+|.|+.|...+..|...|- -.+++.|.
T Consensus         3 ~~~~~~~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~   40 (438)
T PRK04663          3 RWQGIKNVVVVGLGITGLSVVKHLRKYQPQLTVKVIDT   40 (438)
T ss_pred             cccCCceEEEEeccHHHHHHHHHHHhcCCCCeEEEEeC
Confidence            4555 789999999999999999999954 45888876

>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated

Probab=90.71  E-value=2.2  Score=43.92  Aligned_cols=39  Identities=10%  Similarity=0.101  Sum_probs=30.5

Q ss_pred             HHHHHHhcCcEEEEcC-chhHHHHHHHHHHh-CCCcEEEEcC
Q 020565           24 DAQRRLSKSHILVCGM-KGTVAEFCKNIVLA-GVGSLTLMDD   63 (324)
Q Consensus        24 ~~q~~l~~~~VliiG~-g~lGsei~k~L~~~-Gv~~i~lvD~   63 (324)
                      .+-...++.+|+|.|+ |-+|+.+++.|... |. +++.+|.
T Consensus       308 ~~~~~~~~~~VLVTGatGFIGs~Lv~~Ll~~~g~-~V~~l~r  348 (660)
T PRK08125        308 PACSAKRRTRVLILGVNGFIGNHLTERLLRDDNY-EVYGLDI  348 (660)
T ss_pred             chhhhhcCCEEEEECCCchHHHHHHHHHHhCCCc-EEEEEeC
Confidence            4445667788999995 77999999999986 44 4777765

>PRK12367 short chain dehydrogenase; Provisional

Probab=90.69  E-value=0.38  Score=43.01  Aligned_cols=39  Identities=15%  Similarity=0.118  Sum_probs=33.8

Q ss_pred             HHHHHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCC
Q 020565           25 AQRRLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDR   64 (324)
Q Consensus        25 ~q~~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d   64 (324)
                      .|.+++.++++|.|. ||+|.++++.|+..|.. +.+++.+
T Consensus         8 ~~~~l~~k~~lITGas~gIG~ala~~l~~~G~~-Vi~~~r~   47 (245)
T PRK12367          8 AQSTWQGKRIGITGASGALGKALTKAFRAKGAK-VIGLTHS   47 (245)
T ss_pred             hHHhhCCCEEEEEcCCcHHHHHHHHHHHHCCCE-EEEEECC
Confidence            588999999999997 78999999999999975 7777654

>PRK06487 glycerate dehydrogenase; Provisional

Probab=90.67  E-value=0.26  Score=46.00  Aligned_cols=88  Identities=11%  Similarity=0.097  Sum_probs=58.6

Q ss_pred             HHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeE
Q 020565           27 RRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRV  106 (324)
Q Consensus        27 ~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v  106 (324)
                      ..|..++|.|+|+|.+|.++|+.|...|.. +..+|... .           ....   .                .   
T Consensus       144 ~~l~gktvgIiG~G~IG~~vA~~l~~fgm~-V~~~~~~~-~-----------~~~~---~----------------~---  188 (317)
T PRK06487        144 VELEGKTLGLLGHGELGGAVARLAEAFGMR-VLIGQLPG-R-----------PARP---D----------------R---  188 (317)
T ss_pred             cccCCCEEEEECCCHHHHHHHHHHhhCCCE-EEEECCCC-C-----------cccc---c----------------c---
Confidence            368999999999999999999999988885 66666520 0           0001   0                0   


Q ss_pred             eEeeCCCCCCchhhcCCccEEEEcC-CCHHHHHHHHHHHH-hccCCccEEEee
Q 020565          107 SVEKGDLSSLDGEFYDKFDVVVVSC-CSVTTKKLINEKCR-KLSKRVAFYTVD  157 (324)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~diVi~~~-~~~~~~~~l~~~~~-~~~~~ip~i~~~  157 (324)
                              ...+++++.+|+|+.+. .+.+++..+|+..- +++.+--||+++
T Consensus       189 --------~~l~ell~~sDiv~l~lPlt~~T~~li~~~~~~~mk~ga~lIN~a  233 (317)
T PRK06487        189 --------LPLDELLPQVDALTLHCPLTEHTRHLIGARELALMKPGALLINTA  233 (317)
T ss_pred             --------cCHHHHHHhCCEEEECCCCChHHhcCcCHHHHhcCCCCeEEEECC
Confidence                    02356778888887766 46777777776542 223455566655

>PLN02740 Alcohol dehydrogenase-like

Probab=90.62  E-value=1.6  Score=41.66  Aligned_cols=33  Identities=12%  Similarity=0.149  Sum_probs=29.3

Q ss_pred             cCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      ..+|+|+|+|++|..++..+...|+.+++.+|.
T Consensus       199 g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~  231 (381)
T PLN02740        199 GSSVAIFGLGAVGLAVAEGARARGASKIIGVDI  231 (381)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcC
Confidence            568999999999999999999999977888766

>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase

Probab=90.61  E-value=0.7  Score=40.77  Aligned_cols=34  Identities=21%  Similarity=0.211  Sum_probs=29.3

Q ss_pred             HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      |++++|+|.|+ |++|..+++.|+..|.. +.+++.
T Consensus         3 ~~~k~vlItGas~gIG~~ia~~l~~~G~~-vi~~~r   37 (248)
T TIGR01832         3 LEGKVALVTGANTGLGQGIAVGLAEAGAD-IVGAGR   37 (248)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEcC
Confidence            57789999997 78999999999999984 777664

This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.

>PRK05650 short chain dehydrogenase; Provisional

Probab=90.58  E-value=0.86  Score=40.91  Aligned_cols=30  Identities=20%  Similarity=0.279  Sum_probs=25.4

Q ss_pred             cEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           33 HILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        33 ~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      +|+|.|+ |++|.++++.|+..|.. +++++.
T Consensus         2 ~vlVtGasggIG~~la~~l~~~g~~-V~~~~r   32 (270)
T PRK05650          2 RVMITGAASGLGRAIALRWAREGWR-LALADV   32 (270)
T ss_pred             EEEEecCCChHHHHHHHHHHHCCCE-EEEEeC
Confidence            6899996 78999999999999985 666654

>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional

Probab=90.57  E-value=1.4  Score=45.87  Aligned_cols=32  Identities=19%  Similarity=0.323  Sum_probs=28.1

Q ss_pred             CcEEEEcCchhHHHHHHHHHHhCC-CcEEEEcC
Q 020565           32 SHILVCGMKGTVAEFCKNIVLAGV-GSLTLMDD   63 (324)
Q Consensus        32 ~~VliiG~g~lGsei~k~L~~~Gv-~~i~lvD~   63 (324)
                      .+|.|||+|.+|..+++.|...|. .+++++|.
T Consensus         4 ~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~   36 (735)
T PRK14806          4 GRVVVIGLGLIGGSFAKALRERGLAREVVAVDR   36 (735)
T ss_pred             cEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEEC
Confidence            569999999999999999999995 35888876

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=90.57  E-value=0.29  Score=50.89  Aligned_cols=32  Identities=13%  Similarity=0.040  Sum_probs=29.3

Q ss_pred             CcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (324)
Q Consensus        32 ~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d   64 (324)
                      .+|.|||+|..|+.||..++.+|+. ++++|.+
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~G~~-V~l~d~~  345 (714)
T TIGR02437       314 KQAAVLGAGIMGGGIAYQSASKGTP-IVMKDIN  345 (714)
T ss_pred             ceEEEECCchHHHHHHHHHHhCCCe-EEEEeCC
Confidence            3699999999999999999999986 9999985

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form

Probab=90.54  E-value=1.4  Score=41.69  Aligned_cols=96  Identities=20%  Similarity=0.227  Sum_probs=53.4

Q ss_pred             cEEEEcC-chhHHHHHHHHHHhCCCcEE-EEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEee
Q 020565           33 HILVCGM-KGTVAEFCKNIVLAGVGSLT-LMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEK  110 (324)
Q Consensus        33 ~VliiG~-g~lGsei~k~L~~~Gv~~i~-lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~  110 (324)
                      +|.|+|+ |.+|.++++.|...-.-++. +++.+.               ..   |+.-        .+..|.+.... .
T Consensus         2 kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~---------------sa---gk~~--------~~~~~~l~~~~-~   54 (346)
T TIGR01850         2 KVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRE---------------SA---GKPV--------SEVHPHLRGLV-D   54 (346)
T ss_pred             EEEEECCCCHHHHHHHHHHHcCCCceEEEEeccch---------------hc---CCCh--------HHhCccccccC-C
Confidence            7999998 88999999999966333344 445421               11   3321        12223221100 0


Q ss_pred             CCCCC-CchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEeee
Q 020565          111 GDLSS-LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDC  158 (324)
Q Consensus       111 ~~~~~-~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~~~  158 (324)
                      ..+.+ ...++.++.|+||.|+.+......... +.+  .++.+|+.+.
T Consensus        55 ~~~~~~~~~~~~~~~DvVf~alP~~~s~~~~~~-~~~--~G~~VIDlS~  100 (346)
T TIGR01850        55 LNLEPIDEEEIAEDADVVFLALPHGVSAELAPE-LLA--AGVKVIDLSA  100 (346)
T ss_pred             ceeecCCHHHhhcCCCEEEECCCchHHHHHHHH-HHh--CCCEEEeCCh
Confidence            01111 113344589999999987655555444 445  5677776653

This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.

>PRK09291 short chain dehydrogenase; Provisional

Probab=90.53  E-value=1.3  Score=39.26  Aligned_cols=31  Identities=19%  Similarity=0.199  Sum_probs=25.2

Q ss_pred             cCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEc
Q 020565           31 KSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMD   62 (324)
Q Consensus        31 ~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD   62 (324)
                      .++|+|.|+ |++|..+++.|+..|.. +++.+
T Consensus         2 ~~~vlVtGasg~iG~~ia~~l~~~G~~-v~~~~   33 (257)
T PRK09291          2 SKTILITGAGSGFGREVALRLARKGHN-VIAGV   33 (257)
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEe
Confidence            357999997 78999999999999975 44443

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=90.51  E-value=1.8  Score=44.41  Aligned_cols=60  Identities=15%  Similarity=0.214  Sum_probs=41.2

Q ss_pred             CCCCHHHHHHhHHHHHh---hhHHH-HHHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565            4 EELTEQETALYDRQIRV---WGADA-QRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (324)
Q Consensus         4 ~~l~~~e~~ry~Rqi~l---~g~~~-q~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d   64 (324)
                      .+++--.++||--..-.   |.... ...-+..+|+|||.|..|...|..|++.|.. ++++|..
T Consensus       279 ~~v~i~~l~r~~~d~~~~~~~~~~~~~~~~~~kkVaIIG~GpaGl~aA~~L~~~G~~-Vtv~e~~  342 (639)
T PRK12809        279 GAVSIGNLERYITDTALAMGWRPDVSKVVPRSEKVAVIGAGPAGLGCADILARAGVQ-VDVFDRH  342 (639)
T ss_pred             CCcChhHHHHHHHHHHHHhCCCCCCCcccCCCCEEEEECcCHHHHHHHHHHHHcCCc-EEEEeCC
Confidence            34666667777543222   21110 0112478999999999999999999999985 9998864

>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms)

Probab=90.50  E-value=1  Score=42.44  Aligned_cols=91  Identities=14%  Similarity=0.192  Sum_probs=52.2

Q ss_pred             cEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEeeC
Q 020565           33 HILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKG  111 (324)
Q Consensus        33 ~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~~  111 (324)
                      +|+|+|+ |.+|.++++.|...|...+.++             ++.+..+.   |+.=.         + ....+...+.
T Consensus         1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~-------------~~as~~~~---g~~~~---------~-~~~~~~~~~~   54 (339)
T TIGR01296         1 NVAIVGATGAVGQEMLKILEERNFPIDKLV-------------LLASDRSA---GRKVT---------F-KGKELEVNEA   54 (339)
T ss_pred             CEEEEcCCCHHHHHHHHHHHhCCCChhhEE-------------EEeccccC---CCeee---------e-CCeeEEEEeC
Confidence            6899995 7799999999998766544332             11122222   43211         0 0122222211


Q ss_pred             CCCCCchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEee
Q 020565          112 DLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVD  157 (324)
Q Consensus       112 ~~~~~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~~  157 (324)
                        +   .+.++++|+||.|+.+...+....+. .+  .+..+|+..
T Consensus        55 --~---~~~~~~~D~v~~a~g~~~s~~~a~~~-~~--~G~~VID~s   92 (339)
T TIGR01296        55 --K---IESFEGIDIALFSAGGSVSKEFAPKA-AK--CGAIVIDNT   92 (339)
T ss_pred             --C---hHHhcCCCEEEECCCHHHHHHHHHHH-HH--CCCEEEECC
Confidence              1   23357899999999887666655544 34  456566444

Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.

>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=90.49  E-value=0.68  Score=40.45  Aligned_cols=35  Identities=20%  Similarity=0.347  Sum_probs=29.5

Q ss_pred             HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCC
Q 020565           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDR   64 (324)
Q Consensus        29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d   64 (324)
                      +.+.+|+|.|+ |++|..+++.|+..|.. +++++.+
T Consensus         3 ~~~~~ilItGasg~iG~~l~~~l~~~g~~-v~~~~r~   38 (246)
T PRK05653          3 LQGKTALVTGASRGIGRAIALRLAADGAK-VVIYDSN   38 (246)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCC
Confidence            34578999996 88999999999999987 7777664

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=90.47  E-value=0.19  Score=43.04  Aligned_cols=42  Identities=17%  Similarity=0.069  Sum_probs=31.2

Q ss_pred             CcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCC
Q 020565           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSAN   74 (324)
Q Consensus        32 ~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~   74 (324)
                      .+|.|+|+|=+|..+|-.|+..|.. ++-+|.+.-..+.+++.
T Consensus         1 M~I~ViGlGyvGl~~A~~lA~~G~~-V~g~D~~~~~v~~l~~g   42 (185)
T PF03721_consen    1 MKIAVIGLGYVGLPLAAALAEKGHQ-VIGVDIDEEKVEALNNG   42 (185)
T ss_dssp             -EEEEE--STTHHHHHHHHHHTTSE-EEEE-S-HHHHHHHHTT
T ss_pred             CEEEEECCCcchHHHHHHHHhCCCE-EEEEeCChHHHHHHhhc
Confidence            3799999999999999999999965 88888877666666554

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=90.44  E-value=0.34  Score=44.76  Aligned_cols=35  Identities=20%  Similarity=0.336  Sum_probs=31.7

Q ss_pred             HhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565           29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (324)
Q Consensus        29 l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d   64 (324)
                      +..++|+|+|.|.+|..+++.|...|. +++++|.+
T Consensus       150 l~g~kvlViG~G~iG~~~a~~L~~~Ga-~V~v~~r~  184 (296)
T PRK08306        150 IHGSNVLVLGFGRTGMTLARTLKALGA-NVTVGARK  184 (296)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEECC
Confidence            568999999999999999999999997 79988773

>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases

Probab=90.43  E-value=0.5  Score=45.97  Aligned_cols=73  Identities=15%  Similarity=0.115  Sum_probs=42.9

Q ss_pred             cEEEEcCchhHHHHHH--HHH---HhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHH----HHHhhCCC
Q 020565           33 HILVCGMKGTVAEFCK--NIV---LAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCD----SLKDFNPM  103 (324)
Q Consensus        33 ~VliiG~g~lGsei~k--~L~---~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~----~l~~lnp~  103 (324)
                      +|.|||+|++|...+.  .++   .....+++|+|.+.                      .+.+....    .+....+.
T Consensus         2 KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~----------------------e~l~~~~~~~~~~~~~~~~~   59 (423)
T cd05297           2 KIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDE----------------------ERLETVEILAKKIVEELGAP   59 (423)
T ss_pred             eEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCH----------------------HHHHHHHHHHHHHHHhcCCC
Confidence            6999999999987555  454   12224799988632                      22222222    23333444


Q ss_pred             CeEeEeeCCCCCCchhhcCCccEEEEcCC
Q 020565          104 VRVSVEKGDLSSLDGEFYDKFDVVVVSCC  132 (324)
Q Consensus       104 v~v~~~~~~~~~~~~~~~~~~diVi~~~~  132 (324)
                      .++...     ....+.++++|+||.+..
T Consensus        60 ~~I~~t-----tD~~eal~~AD~Vi~ai~   83 (423)
T cd05297          60 LKIEAT-----TDRREALDGADFVINTIQ   83 (423)
T ss_pred             eEEEEe-----CCHHHHhcCCCEEEEeeE
Confidence            444432     122456789999998875

linked to 3D####ucture

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=90.43  E-value=0.38  Score=45.53  Aligned_cols=41  Identities=12%  Similarity=0.059  Sum_probs=35.9

Q ss_pred             hcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccC
Q 020565           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAW   71 (324)
Q Consensus        30 ~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl   71 (324)
                      .+.+|+|||.|-+|..+|..|++.|. +++++|.+.+...+-
T Consensus         3 ~~~~vvVIGgGi~Gls~A~~La~~G~-~V~vie~~~~~~g~s   43 (387)
T COG0665           3 MKMDVVIIGGGIVGLSAAYYLAERGA-DVTVLEAGEAGGGAA   43 (387)
T ss_pred             CcceEEEECCcHHHHHHHHHHHHcCC-EEEEEecCccCCcch
Confidence            46789999999999999999999999 799999888755443

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=90.40  E-value=0.91  Score=40.36  Aligned_cols=113  Identities=19%  Similarity=0.230  Sum_probs=64.8

Q ss_pred             CCHHHHHHhHHHHHhhhH-HH------------------HHH----HhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEc
Q 020565            6 LTEQETALYDRQIRVWGA-DA------------------QRR----LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMD   62 (324)
Q Consensus         6 l~~~e~~ry~Rqi~l~g~-~~------------------q~~----l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD   62 (324)
                      .+..|.+.|++=-..|+. ++                  +-+    +...+||=||||  |..++.-||+.| .+++-+|
T Consensus        12 id~~e~~~F~~la~~wwd~~g~f~~LH~~N~~rl~~i~~~~~~~~~l~g~~vLDvGCG--gG~Lse~mAr~G-a~VtgiD   88 (243)
T COG2227          12 VDYKELDKFEALASRWWDPEGEFKPLHKINPLRLDYIREVARLRFDLPGLRVLDVGCG--GGILSEPLARLG-ASVTGID   88 (243)
T ss_pred             CCHHHHHHHHHHHhhhcCCCCceeeeeeeccchhhhhhhhhhcccCCCCCeEEEecCC--ccHhhHHHHHCC-CeeEEec
Confidence            556777778776666642 11                  112    678999999998  458999999999 5588777


Q ss_pred             CCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEeeCCCCCCchhhcCCccEEEEcCC--CHHHHHHH
Q 020565           63 DRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEFYDKFDVVVVSCC--SVTTKKLI  140 (324)
Q Consensus        63 ~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~~~~~~~~~~~~~~~diVi~~~~--~~~~~~~l  140 (324)
                      -                      ++.-.++++.+-.+-.  +.++.......+....- ..||+|++-.-  -.+....+
T Consensus        89 ~----------------------se~~I~~Ak~ha~e~g--v~i~y~~~~~edl~~~~-~~FDvV~cmEVlEHv~dp~~~  143 (243)
T COG2227          89 A----------------------SEKPIEVAKLHALESG--VNIDYRQATVEDLASAG-GQFDVVTCMEVLEHVPDPESF  143 (243)
T ss_pred             C----------------------ChHHHHHHHHhhhhcc--ccccchhhhHHHHHhcC-CCccEEEEhhHHHccCCHHHH
Confidence            6                      3333444444433322  33433333222221111 58999987642  22233335


Q ss_pred             HHHHHh
Q 020565          141 NEKCRK  146 (324)
Q Consensus       141 ~~~~~~  146 (324)
                      -+.|.+
T Consensus       144 ~~~c~~  149 (243)
T COG2227         144 LRACAK  149 (243)
T ss_pred             HHHHHH
Confidence            555555

>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional

Probab=90.40  E-value=1.7  Score=40.74  Aligned_cols=32  Identities=16%  Similarity=0.230  Sum_probs=26.7

Q ss_pred             CcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           32 SHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        32 ~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      ++|+|.|+ |.+|+.+++.|...|...+.++|.
T Consensus         2 ~~vlVtGatGfIG~~l~~~L~~~g~~~v~~~~~   34 (355)
T PRK10217          2 RKILITGGAGFIGSALVRYIINETSDAVVVVDK   34 (355)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHHcCCCEEEEEec
Confidence            47999996 779999999999999776666664

>PRK08085 gluconate 5-dehydrogenase; Provisional

Probab=90.38  E-value=0.79  Score=40.67  Aligned_cols=34  Identities=21%  Similarity=0.312  Sum_probs=28.3

Q ss_pred             HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      |.+++++|.|. |++|..+++.|+..|. ++.+.|.
T Consensus         7 l~~k~~lItGas~giG~~ia~~L~~~G~-~vvl~~r   41 (254)
T PRK08085          7 LAGKNILITGSAQGIGFLLATGLAEYGA-EIIINDI   41 (254)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHcCC-EEEEEcC
Confidence            56788999996 7899999999999997 4766654

>PRK07589 ornithine cyclodeaminase; Validated

Probab=90.38  E-value=0.94  Score=42.84  Aligned_cols=80  Identities=13%  Similarity=0.101  Sum_probs=56.9

Q ss_pred             HHHHh---cCcEEEEcCchhHHHHHHHHH-HhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhC
Q 020565           26 QRRLS---KSHILVCGMKGTVAEFCKNIV-LAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFN  101 (324)
Q Consensus        26 q~~l~---~~~VliiG~g~lGsei~k~L~-~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~ln  101 (324)
                      -+.|.   ..+++|+|+|..+..-++.+. .-.+.++.+++.                      ...|++..++++++. 
T Consensus       121 ~~~Lar~da~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r----------------------~~~~a~~~~~~~~~~-  177 (346)
T PRK07589        121 AKYLARPDSRTMALIGNGAQSEFQALAFKALLGIEEIRLYDI----------------------DPAATAKLARNLAGP-  177 (346)
T ss_pred             HHHhccCCCcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeC----------------------CHHHHHHHHHHHHhc-
Confidence            35554   477999999999987776554 446778888755                      666888888888863 


Q ss_pred             CCCeEeEeeCCCCCCchhhcCCccEEEEcCCCH
Q 020565          102 PMVRVSVEKGDLSSLDGEFYDKFDVVVVSCCSV  134 (324)
Q Consensus       102 p~v~v~~~~~~~~~~~~~~~~~~diVi~~~~~~  134 (324)
                       .+++...     +..++.+++.|+|+.|+.+.
T Consensus       178 -~~~v~~~-----~~~~~av~~ADIIvtaT~S~  204 (346)
T PRK07589        178 -GLRIVAC-----RSVAEAVEGADIITTVTADK  204 (346)
T ss_pred             -CCcEEEe-----CCHHHHHhcCCEEEEecCCC
Confidence             3444442     23467788999999998653

>PRK08818 prephenate dehydrogenase; Provisional

Probab=90.37  E-value=1.6  Score=41.74  Aligned_cols=35  Identities=6%  Similarity=-0.079  Sum_probs=28.2

Q ss_pred             HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      +.+-+|+|||+ |.+|..+++.|....-.+++.+|.
T Consensus         2 ~~~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~   37 (370)
T PRK08818          2 IAQPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDP   37 (370)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcC
Confidence            35678999999 999999999999653335777876

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=90.37  E-value=1.8  Score=45.03  Aligned_cols=32  Identities=13%  Similarity=0.064  Sum_probs=28.4

Q ss_pred             CcEEEEcCchhHHHHHHHHH-HhCCCcEEEEcCC
Q 020565           32 SHILVCGMKGTVAEFCKNIV-LAGVGSLTLMDDR   64 (324)
Q Consensus        32 ~~VliiG~g~lGsei~k~L~-~~Gv~~i~lvD~d   64 (324)
                      .+|.|||+|..|+.+|..++ .+|+. ++++|.+
T Consensus       305 ~~v~ViGaG~mG~~iA~~~a~~~G~~-V~l~d~~  337 (699)
T TIGR02440       305 KKVGILGGGLMGGGIASVTATKAGIP-VRIKDIN  337 (699)
T ss_pred             cEEEEECCcHHHHHHHHHHHHHcCCe-EEEEeCC
Confidence            37999999999999999998 58986 8999875

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated

Probab=90.33  E-value=0.59  Score=41.54  Aligned_cols=34  Identities=21%  Similarity=0.301  Sum_probs=28.7

Q ss_pred             HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      |.+++|+|.|+ |++|..+++.|+..|.. +.++|.
T Consensus         9 l~~k~vlVtG~s~gIG~~la~~l~~~G~~-vv~~~r   43 (255)
T PRK06113          9 LDGKCAIITGAGAGIGKEIAITFATAGAS-VVVSDI   43 (255)
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCCe-EEEEeC
Confidence            67889999996 78999999999999975 666654

>PLN02253 xanthoxin dehydrogenase

Probab=90.32  E-value=1  Score=40.58  Aligned_cols=35  Identities=23%  Similarity=0.236  Sum_probs=29.6

Q ss_pred             HHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        28 ~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      ++++++++|.|. |++|.++++.|+..|.. +.++|.
T Consensus        15 ~l~~k~~lItGas~gIG~~la~~l~~~G~~-v~~~~~   50 (280)
T PLN02253         15 RLLGKVALVTGGATGIGESIVRLFHKHGAK-VCIVDL   50 (280)
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHcCCE-EEEEeC
Confidence            467788999995 78999999999999975 777765

>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase

Probab=90.29  E-value=1.6  Score=42.63  Aligned_cols=30  Identities=17%  Similarity=0.189  Sum_probs=26.8

Q ss_pred             cEEEEcCchhHHH-HHHHHHHhCCCcEEEEcC
Q 020565           33 HILVCGMKGTVAE-FCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        33 ~VliiG~g~lGse-i~k~L~~~Gv~~i~lvD~   63 (324)
                      ++.++|.|+.|.. +|+.|...|.. ++..|.
T Consensus         1 ~~~~iGiggsGm~~la~~L~~~G~~-v~~~D~   31 (448)
T TIGR01082         1 KIHFVGIGGIGMSGIAEILLNRGYQ-VSGSDI   31 (448)
T ss_pred             CEEEEEECHHHHHHHHHHHHHCCCe-EEEECC
Confidence            5889999999998 99999999987 777776

UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.

>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional

Probab=90.27  E-value=2.3  Score=38.98  Aligned_cols=107  Identities=12%  Similarity=0.076  Sum_probs=58.9

Q ss_pred             cEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEeeC
Q 020565           33 HILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKG  111 (324)
Q Consensus        33 ~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~~  111 (324)
                      +|||.|+ |-+|+.+++.|...|  +++.+|....        +  ...|+   -  ..+.+.+.+++..|++-++.-..
T Consensus         2 ~iLVtG~~GfiGs~l~~~L~~~g--~V~~~~~~~~--------~--~~~Dl---~--d~~~~~~~~~~~~~D~Vih~Aa~   64 (299)
T PRK09987          2 NILLFGKTGQVGWELQRALAPLG--NLIALDVHST--------D--YCGDF---S--NPEGVAETVRKIRPDVIVNAAAH   64 (299)
T ss_pred             eEEEECCCCHHHHHHHHHhhccC--CEEEeccccc--------c--ccCCC---C--CHHHHHHHHHhcCCCEEEECCcc
Confidence            6999997 789999999999888  5777775311        1  12344   2  23445556666666654443211


Q ss_pred             CCCCCchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEeeecCceE
Q 020565          112 DLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCG  163 (324)
Q Consensus       112 ~~~~~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~~~~G~~g  163 (324)
                      .  .. .....+.+..  -..|......+-+.|++  .++++|+.++...||
T Consensus        65 ~--~~-~~~~~~~~~~--~~~N~~~~~~l~~aa~~--~g~~~v~~Ss~~Vy~  109 (299)
T PRK09987         65 T--AV-DKAESEPEFA--QLLNATSVEAIAKAANE--VGAWVVHYSTDYVFP  109 (299)
T ss_pred             C--Cc-chhhcCHHHH--HHHHHHHHHHHHHHHHH--cCCeEEEEccceEEC
Confidence            0  00 0000000000  00122233467788988  778899887755443

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=90.27  E-value=0.3  Score=45.21  Aligned_cols=34  Identities=15%  Similarity=0.232  Sum_probs=28.4

Q ss_pred             CcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCcc
Q 020565           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVV   66 (324)
Q Consensus        32 ~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v   66 (324)
                      ..|+|||+|..|+.+|..|++.|+. ++|+|....
T Consensus         2 ~dV~IvGaG~aGl~~A~~L~~~G~~-v~i~E~~~~   35 (356)
T PF01494_consen    2 YDVAIVGAGPAGLAAALALARAGID-VTIIERRPD   35 (356)
T ss_dssp             EEEEEE--SHHHHHHHHHHHHTTCE-EEEEESSSS
T ss_pred             ceEEEECCCHHHHHHHHHHHhcccc-cccchhccc
Confidence            4699999999999999999999997 899988543

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>PRK06270 homoserine dehydrogenase; Provisional

Probab=90.22  E-value=1.7  Score=41.03  Aligned_cols=22  Identities=14%  Similarity=0.163  Sum_probs=19.8

Q ss_pred             CcEEEEcCchhHHHHHHHHHHh
Q 020565           32 SHILVCGMKGTVAEFCKNIVLA   53 (324)
Q Consensus        32 ~~VliiG~g~lGsei~k~L~~~   53 (324)
                      -+|.|+|+|.+|..+++.|...
T Consensus         3 i~V~IiG~G~VG~~~~~~L~~~   24 (341)
T PRK06270          3 MKIALIGFGGVGQGVAELLAEK   24 (341)
T ss_pred             EEEEEECCCHHHHHHHHHHHHh
Confidence            4799999999999999999765

>PRK12827 short chain dehydrogenase; Provisional

Probab=90.22  E-value=1.4  Score=38.60  Aligned_cols=34  Identities=18%  Similarity=0.326  Sum_probs=28.6

Q ss_pred             HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      |++++++|.|+ |++|..+++.|+..|.. +++++.
T Consensus         4 ~~~~~ilItGasg~iG~~la~~l~~~g~~-v~~~~~   38 (249)
T PRK12827          4 LDSRRVLITGGSGGLGRAIAVRLAADGAD-VIVLDI   38 (249)
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHHCCCe-EEEEcC
Confidence            45788999995 78999999999999985 777663

>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []

Probab=90.22  E-value=1.1  Score=41.76  Aligned_cols=75  Identities=16%  Similarity=0.095  Sum_probs=50.3

Q ss_pred             cCcEEEEcCchhHHHHHHHHHH-hCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEe
Q 020565           31 KSHILVCGMKGTVAEFCKNIVL-AGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVE  109 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~~-~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~  109 (324)
                      ..++.|+|+|.-+-.-++.+.. .++.++.++|.                      ...+++..++++++ . .+.+...
T Consensus       128 ~~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r----------------------~~~~~~~~~~~~~~-~-~~~v~~~  183 (313)
T PF02423_consen  128 ARTLGVIGAGVQARWHLRALAAVRPIKEVRVYSR----------------------SPERAEAFAARLRD-L-GVPVVAV  183 (313)
T ss_dssp             --EEEEE--SHHHHHHHHHHHHHS--SEEEEE-S----------------------SHHHHHHHHHHHHC-C-CTCEEEE
T ss_pred             CceEEEECCCHHHHHHHHHHHHhCCceEEEEEcc----------------------ChhHHHHHHHhhcc-c-cccceec
Confidence            3579999999999988887754 67999999876                      66688999999998 3 5555544


Q ss_pred             eCCCCCCchhhcCCccEEEEcCCCH
Q 020565          110 KGDLSSLDGEFYDKFDVVVVSCCSV  134 (324)
Q Consensus       110 ~~~~~~~~~~~~~~~diVi~~~~~~  134 (324)
                      .     ..++.++++|+|+.|+.+.
T Consensus       184 ~-----~~~~av~~aDii~taT~s~  203 (313)
T PF02423_consen  184 D-----SAEEAVRGADIIVTATPST  203 (313)
T ss_dssp             S-----SHHHHHTTSSEEEE----S
T ss_pred             c-----chhhhcccCCEEEEccCCC
Confidence            2     3467789999999988763

The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.

>PRK05876 short chain dehydrogenase; Provisional

Probab=90.20  E-value=0.57  Score=42.46  Aligned_cols=34  Identities=15%  Similarity=0.156  Sum_probs=28.8

Q ss_pred             HhcCcEEEEc-CchhHHHHHHHHHHhCCCcEEEEcC
Q 020565           29 LSKSHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        29 l~~~~VliiG-~g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      ++.++++|.| .|++|.++++.|+..|.. +.++|.
T Consensus         4 ~~~k~vlVTGas~gIG~ala~~La~~G~~-Vv~~~r   38 (275)
T PRK05876          4 FPGRGAVITGGASGIGLATGTEFARRGAR-VVLGDV   38 (275)
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEeC
Confidence            5678899999 478999999999999985 777664

>PRK07109 short chain dehydrogenase; Provisional

Probab=90.12  E-value=0.91  Score=42.53  Aligned_cols=35  Identities=11%  Similarity=0.302  Sum_probs=29.4

Q ss_pred             HHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        28 ~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      .+++++|+|.|+ |++|.++++.|+..|.. +.+++.
T Consensus         5 ~l~~k~vlITGas~gIG~~la~~la~~G~~-Vvl~~R   40 (334)
T PRK07109          5 PIGRQVVVITGASAGVGRATARAFARRGAK-VVLLAR   40 (334)
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEEC
Confidence            456788999996 78999999999999974 777664

>PLN02695 GDP-D-mannose-3',5'-epimerase

Probab=90.11  E-value=1.1  Score=42.62  Aligned_cols=33  Identities=15%  Similarity=0.142  Sum_probs=28.2

Q ss_pred             hcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           30 SKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        30 ~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      ++.+|+|.|. |-+|+.+++.|...|. +++.+|.
T Consensus        20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~-~V~~v~r   53 (370)
T PLN02695         20 EKLRICITGAGGFIASHIARRLKAEGH-YIIASDW   53 (370)
T ss_pred             CCCEEEEECCccHHHHHHHHHHHhCCC-EEEEEEe
Confidence            4578999997 7899999999999996 4787775

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=90.11  E-value=1.3  Score=45.67  Aligned_cols=34  Identities=15%  Similarity=0.195  Sum_probs=30.5

Q ss_pred             hcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (324)
Q Consensus        30 ~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d   64 (324)
                      ...+|+|||.|..|...|..|++.|.. ++++|..
T Consensus       192 ~~k~VaIIGaGpAGl~aA~~La~~G~~-Vtv~e~~  225 (652)
T PRK12814        192 SGKKVAIIGAGPAGLTAAYYLLRKGHD-VTIFDAN  225 (652)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCc-EEEEecC
Confidence            457899999999999999999999985 9999864

>PLN02572 UDP-sulfoquinovose synthase

Probab=90.10  E-value=0.91  Score=44.41  Aligned_cols=36  Identities=14%  Similarity=0.143  Sum_probs=31.1

Q ss_pred             HHHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           27 RRLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        27 ~~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      .++++.+|+|.|. |.+|+.+++.|+..|.. ++++|.
T Consensus        43 ~~~~~k~VLVTGatGfIGs~Lv~~L~~~G~~-V~~~d~   79 (442)
T PLN02572         43 SSSKKKKVMVIGGDGYCGWATALHLSKRGYE-VAIVDN   79 (442)
T ss_pred             ccccCCEEEEECCCcHHHHHHHHHHHHCCCe-EEEEec
Confidence            4677788999995 88999999999999974 888885

>PRK08643 acetoin reductase; Validated

Probab=90.08  E-value=1.1  Score=39.72  Aligned_cols=32  Identities=25%  Similarity=0.361  Sum_probs=26.6

Q ss_pred             cCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           31 KSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        31 ~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      +++++|.|. |++|..+++.|+..|.. +.++|.
T Consensus         2 ~k~~lItGas~giG~~la~~l~~~G~~-v~~~~r   34 (256)
T PRK08643          2 SKVALVTGAGQGIGFAIAKRLVEDGFK-VAIVDY   34 (256)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCE-EEEEeC
Confidence            467899995 78999999999999974 777764

>PRK05855 short chain dehydrogenase; Validated

Probab=90.02  E-value=0.72  Score=46.06  Aligned_cols=40  Identities=18%  Similarity=0.183  Sum_probs=33.2

Q ss_pred             HHHHHHHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           23 ADAQRRLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        23 ~~~q~~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      ...+..+++.+++|+|+ ||+|.++++.|+..|.. +.+++.
T Consensus       307 ~~~~~~~~~~~~lv~G~s~giG~~~a~~l~~~G~~-v~~~~r  347 (582)
T PRK05855        307 GRPRGPFSGKLVVVTGAGSGIGRETALAFAREGAE-VVASDI  347 (582)
T ss_pred             ccccccCCCCEEEEECCcCHHHHHHHHHHHHCCCE-EEEEeC
Confidence            34456788899999996 89999999999999986 777664

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=89.91  E-value=1.9  Score=37.64  Aligned_cols=34  Identities=12%  Similarity=0.199  Sum_probs=28.8

Q ss_pred             HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      |++++|+|.|+ |++|..+++.|+..|. ++.+++.
T Consensus         3 ~~~~~vlItGa~g~iG~~~a~~l~~~G~-~V~~~~r   37 (238)
T PRK05786          3 LKGKKVAIIGVSEGLGYAVAYFALKEGA-QVCINSR   37 (238)
T ss_pred             cCCcEEEEECCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence            56789999997 6799999999999998 4777655

>PTZ00317 NADP-dependent malic enzyme; Provisional

Probab=89.88  E-value=0.24  Score=49.24  Aligned_cols=55  Identities=24%  Similarity=0.325  Sum_probs=44.3

Q ss_pred             HHHhHHHHHhhhHHHH------------------HHHhcCcEEEEcCchhHHHHHHHHH----HhCC------CcEEEEc
Q 020565           11 TALYDRQIRVWGADAQ------------------RRLSKSHILVCGMKGTVAEFCKNIV----LAGV------GSLTLMD   62 (324)
Q Consensus        11 ~~ry~Rqi~l~g~~~q------------------~~l~~~~VliiG~g~lGsei~k~L~----~~Gv------~~i~lvD   62 (324)
                      +++|..++..|..+-|                  ++|++.+|++.|+|+.|.-+|+.|+    ..|+      ++|.++|
T Consensus       259 L~kyr~~i~~FnDDiQGTaaV~lAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~m~~~Gls~eeA~~~i~~vD  338 (559)
T PTZ00317        259 LERYQNKYRCFNDDIQGTGAVIAAGFLNALKLSGVPPEEQRIVFFGAGSAAIGVANNIADLAAEYGVTREEALKSFYLVD  338 (559)
T ss_pred             HHHhccCCCEecccchhHHHHHHHHHHHHHHHhCCChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEc
Confidence            4677766766644333                  5789999999999999999999988    4799      7999999


Q ss_pred             CCc
Q 020565           63 DRV   65 (324)
Q Consensus        63 ~d~   65 (324)
                      .+-
T Consensus       339 ~~G  341 (559)
T PTZ00317        339 SKG  341 (559)
T ss_pred             CCC
Confidence            864

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=89.85  E-value=0.36  Score=45.61  Aligned_cols=35  Identities=11%  Similarity=0.152  Sum_probs=31.3

Q ss_pred             cCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCcc
Q 020565           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVV   66 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v   66 (324)
                      ...|+|||.|-+|+.+|..|++.|. +++|+|.+..
T Consensus         3 ~~dv~IIGgGi~G~s~A~~L~~~g~-~V~lie~~~~   37 (376)
T PRK11259          3 RYDVIVIGLGSMGSAAGYYLARRGL-RVLGLDRFMP   37 (376)
T ss_pred             cccEEEECCCHHHHHHHHHHHHCCC-eEEEEecccC
Confidence            4679999999999999999999997 5999998754

>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1

Probab=89.84  E-value=0.65  Score=42.53  Aligned_cols=99  Identities=16%  Similarity=0.220  Sum_probs=56.8

Q ss_pred             cEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEeeC
Q 020565           33 HILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKG  111 (324)
Q Consensus        33 ~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~~  111 (324)
                      ||||+|. |-+|+.+++.|...|.. +...+..                ++   .-...+.+.+.+.+..|++-|..-..
T Consensus         2 riLI~GasG~lG~~l~~~l~~~~~~-v~~~~r~----------------~~---dl~d~~~~~~~~~~~~pd~Vin~aa~   61 (286)
T PF04321_consen    2 RILITGASGFLGSALARALKERGYE-VIATSRS----------------DL---DLTDPEAVAKLLEAFKPDVVINCAAY   61 (286)
T ss_dssp             EEEEETTTSHHHHHHHHHHTTTSEE-EEEESTT----------------CS----TTSHHHHHHHHHHH--SEEEE----
T ss_pred             EEEEECCCCHHHHHHHHHHhhCCCE-EEEeCch----------------hc---CCCCHHHHHHHHHHhCCCeEecccee
Confidence            7999995 77999999999998865 3333433                12   22245677778888888765554211


Q ss_pred             C-CC--C-CchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEeeecCce
Q 020565          112 D-LS--S-LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSC  162 (324)
Q Consensus       112 ~-~~--~-~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~~~~G~~  162 (324)
                      . ++  + ..+..+         ..|......|.+.|.+  .++++|+.++...+
T Consensus        62 ~~~~~ce~~p~~a~---------~iN~~~~~~la~~~~~--~~~~li~~STd~VF  105 (286)
T PF04321_consen   62 TNVDACEKNPEEAY---------AINVDATKNLAEACKE--RGARLIHISTDYVF  105 (286)
T ss_dssp             --HHHHHHSHHHHH---------HHHTHHHHHHHHHHHH--CT-EEEEEEEGGGS
T ss_pred             ecHHhhhhChhhhH---------HHhhHHHHHHHHHHHH--cCCcEEEeeccEEE
Confidence            0 00  0 000000         0022233567789999  99999999887544

1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.

>PLN02650 dihydroflavonol-4-reductase

Probab=89.78  E-value=3.5  Score=38.62  Aligned_cols=32  Identities=13%  Similarity=0.036  Sum_probs=26.2

Q ss_pred             cCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           31 KSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        31 ~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      +.+|+|.|+ |.+|+.+++.|+..|.. +++++.
T Consensus         5 ~k~iLVTGatGfIGs~l~~~L~~~G~~-V~~~~r   37 (351)
T PLN02650          5 KETVCVTGASGFIGSWLVMRLLERGYT-VRATVR   37 (351)
T ss_pred             CCEEEEeCCcHHHHHHHHHHHHHCCCE-EEEEEc
Confidence            568999996 78999999999999975 655543

>PLN02383 aspartate semialdehyde dehydrogenase

Probab=89.78  E-value=1.7  Score=41.04  Aligned_cols=91  Identities=18%  Similarity=0.206  Sum_probs=52.6

Q ss_pred             cCcEEEEcC-chhHHHHHHHHHHhCCC--cEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEe
Q 020565           31 KSHILVCGM-KGTVAEFCKNIVLAGVG--SLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS  107 (324)
Q Consensus        31 ~~~VliiG~-g~lGsei~k~L~~~Gv~--~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~  107 (324)
                      ..+|.|+|+ |.+|.++++.|...+.-  ++..+..               ....   |+.-..          ....+.
T Consensus         7 ~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las---------------~rsa---Gk~~~~----------~~~~~~   58 (344)
T PLN02383          7 GPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLAS---------------ARSA---GKKVTF----------EGRDYT   58 (344)
T ss_pred             CCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEc---------------cCCC---CCeeee----------cCceeE
Confidence            468999997 66999999999986654  3433322               2222   432211          011221


Q ss_pred             EeeCCCCCCchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEee
Q 020565          108 VEKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVD  157 (324)
Q Consensus       108 ~~~~~~~~~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~~  157 (324)
                      ..     +...+.++++|+||.|..+.....+.-++ .+  .+.++|+.+
T Consensus        59 v~-----~~~~~~~~~~D~vf~a~p~~~s~~~~~~~-~~--~g~~VIDlS  100 (344)
T PLN02383         59 VE-----ELTEDSFDGVDIALFSAGGSISKKFGPIA-VD--KGAVVVDNS  100 (344)
T ss_pred             EE-----eCCHHHHcCCCEEEECCCcHHHHHHHHHH-Hh--CCCEEEECC
Confidence            11     11123357899999999876655555544 34  566666554

>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=89.77  E-value=1.9  Score=41.92  Aligned_cols=35  Identities=17%  Similarity=0.279  Sum_probs=30.5

Q ss_pred             HhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565           29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (324)
Q Consensus        29 l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d   64 (324)
                      +.+++|+|+|.|+.|...++.|...|. +++..|..
T Consensus         4 ~~~~~i~v~G~G~sG~s~~~~l~~~G~-~v~~~D~~   38 (438)
T PRK03806          4 YQGKKVVIIGLGLTGLSCVDFFLARGV-TPRVIDTR   38 (438)
T ss_pred             cCCCEEEEEeeCHHHHHHHHHHHHCCC-eEEEEcCC
Confidence            356789999999999999999999997 58888863

>PLN02653 GDP-mannose 4,6-dehydratase

Probab=89.73  E-value=1  Score=42.00  Aligned_cols=34  Identities=9%  Similarity=0.088  Sum_probs=28.4

Q ss_pred             HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      +++.+|+|.|+ |.+|+++++.|+..|.. ++++|.
T Consensus         4 ~~~~~vlVTGatGfiG~~l~~~L~~~G~~-V~~~~r   38 (340)
T PLN02653          4 PPRKVALITGITGQDGSYLTEFLLSKGYE-VHGIIR   38 (340)
T ss_pred             CCCCEEEEECCCCccHHHHHHHHHHCCCE-EEEEec
Confidence            45678999996 78999999999999975 766654

>PRK01581 speE spermidine synthase; Validated

Probab=89.70  E-value=1.1  Score=42.56  Aligned_cols=58  Identities=10%  Similarity=0.110  Sum_probs=37.4

Q ss_pred             CCCHHHHHHhHHHHHhhhHHHHHHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCc
Q 020565            5 ELTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV   65 (324)
Q Consensus         5 ~l~~~e~~ry~Rqi~l~g~~~q~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~   65 (324)
                      ++|+.+.-.|..-+.--.  ........+||++|+| .|..+...|...++.++++||-|.
T Consensus       127 Q~se~DE~iYHE~Lvhp~--m~~h~~PkrVLIIGgG-dG~tlrelLk~~~v~~It~VEIDp  184 (374)
T PRK01581        127 QFSSVDEQIYHEALVHPI--MSKVIDPKRVLILGGG-DGLALREVLKYETVLHVDLVDLDG  184 (374)
T ss_pred             ccccccHHHHHHHHHHHH--HHhCCCCCEEEEECCC-HHHHHHHHHhcCCCCeEEEEeCCH
Confidence            355555556765433322  2344566799999976 566555555556789999998754

>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]

Probab=89.69  E-value=2.9  Score=37.97  Aligned_cols=91  Identities=12%  Similarity=0.146  Sum_probs=56.2

Q ss_pred             CcEEEEcCchhHHHHHHHHHHhCC---CcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeE
Q 020565           32 SHILVCGMKGTVAEFCKNIVLAGV---GSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV  108 (324)
Q Consensus        32 ~~VliiG~g~lGsei~k~L~~~Gv---~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~  108 (324)
                      .+|.+||+|..|..++.-|..+|.   .+|.+.++                      ...|.+    .+.+..+.. +  
T Consensus         2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~----------------------~~e~~~----~l~~~~g~~-~--   52 (266)
T COG0345           2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNR----------------------SEEKRA----ALAAEYGVV-T--   52 (266)
T ss_pred             ceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCC----------------------CHHHHH----HHHHHcCCc-c--
Confidence            479999999999999999999994   45655444                      221222    334334332 1  


Q ss_pred             eeCCCCCCchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEee
Q 020565          109 EKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVD  157 (324)
Q Consensus       109 ~~~~~~~~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~~  157 (324)
                           .....+.....|+||.|.-+......+.++-- ...+..+|+..
T Consensus        53 -----~~~~~~~~~~advv~LavKPq~~~~vl~~l~~-~~~~~lvISia   95 (266)
T COG0345          53 -----TTDNQEAVEEADVVFLAVKPQDLEEVLSKLKP-LTKDKLVISIA   95 (266)
T ss_pred             -----cCcHHHHHhhCCEEEEEeChHhHHHHHHHhhc-ccCCCEEEEEe
Confidence                 22335667789999999988655544444431 11344455544

>PRK09126 hypothetical protein; Provisional

Probab=89.68  E-value=0.41  Score=45.61  Aligned_cols=35  Identities=23%  Similarity=0.396  Sum_probs=31.3

Q ss_pred             hcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCc
Q 020565           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV   65 (324)
Q Consensus        30 ~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~   65 (324)
                      .+..|+|||+|..|+.+|..|++.|+. ++|+|...
T Consensus         2 ~~~dviIvGgG~aGl~~A~~L~~~G~~-v~v~E~~~   36 (392)
T PRK09126          2 MHSDIVVVGAGPAGLSFARSLAGSGLK-VTLIERQP   36 (392)
T ss_pred             CcccEEEECcCHHHHHHHHHHHhCCCc-EEEEeCCC
Confidence            457899999999999999999999996 89998764

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=89.66  E-value=0.53  Score=45.24  Aligned_cols=33  Identities=27%  Similarity=0.262  Sum_probs=30.5

Q ss_pred             CcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCc
Q 020565           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV   65 (324)
Q Consensus        32 ~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~   65 (324)
                      ++|+|||.|-+|+.+|..|++.|. +++++|.+.
T Consensus         2 ~~vvIIGaG~~G~~~A~~La~~g~-~V~vle~~~   34 (410)
T PRK12409          2 SHIAVIGAGITGVTTAYALAQRGY-QVTVFDRHR   34 (410)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCC
Confidence            589999999999999999999997 599999875

>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor

Probab=89.66  E-value=1.6  Score=37.85  Aligned_cols=25  Identities=16%  Similarity=0.275  Sum_probs=21.7

Q ss_pred             EEEEcC-chhHHHHHHHHHHhCCCcE
Q 020565           34 ILVCGM-KGTVAEFCKNIVLAGVGSL   58 (324)
Q Consensus        34 VliiG~-g~lGsei~k~L~~~Gv~~i   58 (324)
                      |+|+|. |-+|+++++.|...|...+
T Consensus         1 IlI~GatG~iG~~l~~~l~~~g~~v~   26 (236)
T PF01370_consen    1 ILITGATGFIGSALVRQLLKKGHEVI   26 (236)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTTEEE
T ss_pred             EEEEccCCHHHHHHHHHHHHcCCccc
Confidence            789995 6799999999999998744

The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....

>PRK06523 short chain dehydrogenase; Provisional

Probab=89.61  E-value=1.1  Score=39.91  Aligned_cols=37  Identities=24%  Similarity=0.248  Sum_probs=31.5

Q ss_pred             HHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCCc
Q 020565           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRV   65 (324)
Q Consensus        28 ~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d~   65 (324)
                      ++++++|+|.|+ |++|.++++.|+..|.. +.+++.+.
T Consensus         6 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~-v~~~~r~~   43 (260)
T PRK06523          6 ELAGKRALVTGGTKGIGAATVARLLEAGAR-VVTTARSR   43 (260)
T ss_pred             CCCCCEEEEECCCCchhHHHHHHHHHCCCE-EEEEeCCh
Confidence            467889999996 79999999999999985 88887653

>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional

Probab=89.59  E-value=1  Score=41.30  Aligned_cols=31  Identities=19%  Similarity=0.253  Sum_probs=26.8

Q ss_pred             EEEEcC-chhHHHHHHHHHHhCCCcEEEEcCC
Q 020565           34 ILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDR   64 (324)
Q Consensus        34 VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d   64 (324)
                      |+|.|+ |-+|+.+++.|...|...+.++|..
T Consensus         2 ilVtGa~GfiG~~l~~~L~~~g~~~v~~~~~~   33 (308)
T PRK11150          2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNL   33 (308)
T ss_pred             EEEecCCcHHHHHHHHHHHhCCCceEEEecCC
Confidence            788885 8899999999999998778888864

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=89.59  E-value=4.2  Score=36.44  Aligned_cols=76  Identities=8%  Similarity=0.041  Sum_probs=43.5

Q ss_pred             cCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEee
Q 020565           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEK  110 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~  110 (324)
                      ..+|+=+||| .|. .+..|+..| .+++.+|.                      .....+.+++++.+..-.-+++...
T Consensus        45 ~~~vLDiGcG-~G~-~a~~la~~g-~~v~~vD~----------------------s~~~l~~a~~~~~~~g~~~~v~~~~   99 (255)
T PRK11036         45 PLRVLDAGGG-EGQ-TAIKLAELG-HQVILCDL----------------------SAEMIQRAKQAAEAKGVSDNMQFIH   99 (255)
T ss_pred             CCEEEEeCCC-chH-HHHHHHHcC-CEEEEEEC----------------------CHHHHHHHHHHHHhcCCccceEEEE
Confidence            4689999998 464 566777777 45888876                      3334455566665543222344443


Q ss_pred             CCCCCCchhhcCCccEEEEcC
Q 020565          111 GDLSSLDGEFYDKFDVVVVSC  131 (324)
Q Consensus       111 ~~~~~~~~~~~~~~diVi~~~  131 (324)
                      .+..+.....-..||+|++..
T Consensus       100 ~d~~~l~~~~~~~fD~V~~~~  120 (255)
T PRK11036        100 CAAQDIAQHLETPVDLILFHA  120 (255)
T ss_pred             cCHHHHhhhcCCCCCEEEehh
Confidence            333222111224799998653

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=89.51  E-value=1.6  Score=46.85  Aligned_cols=34  Identities=18%  Similarity=0.185  Sum_probs=30.7

Q ss_pred             hcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (324)
Q Consensus        30 ~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d   64 (324)
                      ..++|+|||.|..|..+|..|++.|.. ++|+|..
T Consensus       538 tgKkVaIIGgGPAGLsAA~~Lar~G~~-VtV~Ek~  571 (1019)
T PRK09853        538 SRKKVAVIGAGPAGLAAAYFLARAGHP-VTVFERE  571 (1019)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCe-EEEEecc
Confidence            467899999999999999999999984 9999874

>PRK14031 glutamate dehydrogenase; Provisional

Probab=89.50  E-value=1.7  Score=42.44  Aligned_cols=36  Identities=19%  Similarity=0.208  Sum_probs=32.5

Q ss_pred             HHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565           28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        28 ~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      .|+.++|+|.|.|-+|+..++.|...|..-+.+-|.
T Consensus       225 ~l~g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD~  260 (444)
T PRK14031        225 DLKGKVCLVSGSGNVAQYTAEKVLELGGKVVTMSDS  260 (444)
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            478999999999999999999999999987777774

>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2

Probab=89.48  E-value=2.4  Score=38.26  Aligned_cols=37  Identities=16%  Similarity=0.256  Sum_probs=32.4

Q ss_pred             HHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565           27 RRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        27 ~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      ..|+.++|+|.|.|.+|+.+++.|...|.+-+.+.|.
T Consensus        34 ~~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD~   70 (254)
T cd05313          34 ETLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSDS   70 (254)
T ss_pred             CCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            4578899999999999999999999999876667774

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t

>PRK08703 short chain dehydrogenase; Provisional

Probab=89.47  E-value=1.7  Score=38.12  Aligned_cols=34  Identities=32%  Similarity=0.436  Sum_probs=29.2

Q ss_pred             HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      |+.++|+|.|+ |++|.++++.|+..|.. +++++.
T Consensus         4 l~~k~vlItG~sggiG~~la~~l~~~g~~-V~~~~r   38 (239)
T PRK08703          4 LSDKTILVTGASQGLGEQVAKAYAAAGAT-VILVAR   38 (239)
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHHHcCCE-EEEEeC
Confidence            56789999996 78999999999999975 777765

>PRK06196 oxidoreductase; Provisional

Probab=89.45  E-value=1.4  Score=40.69  Aligned_cols=35  Identities=23%  Similarity=0.247  Sum_probs=29.6

Q ss_pred             HHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        28 ~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      .++.++|+|.|+ |++|.++++.|+..|.. +++++.
T Consensus        23 ~l~~k~vlITGasggIG~~~a~~L~~~G~~-Vv~~~R   58 (315)
T PRK06196         23 DLSGKTAIVTGGYSGLGLETTRALAQAGAH-VIVPAR   58 (315)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEeC
Confidence            356788999997 78999999999999975 777665

>PTZ00188 adrenodoxin reductase; Provisional

Probab=89.42  E-value=2.1  Score=42.40  Aligned_cols=95  Identities=12%  Similarity=0.183  Sum_probs=55.7

Q ss_pred             hcCcEEEEcCchhHHHHHHHHH-HhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhh--CCCCeE
Q 020565           30 SKSHILVCGMKGTVAEFCKNIV-LAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDF--NPMVRV  106 (324)
Q Consensus        30 ~~~~VliiG~g~lGsei~k~L~-~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~l--np~v~v  106 (324)
                      +..+|+|||.|+.|.++|..|+ ..|+. ++|+|....--- +-|. -..++      ..+.+.+.+.+.+.  ++.+++
T Consensus        38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~-VtlfEk~p~pgG-LvR~-GVaPd------h~~~k~v~~~f~~~~~~~~v~f  108 (506)
T PTZ00188         38 KPFKVGIIGAGPSALYCCKHLLKHERVK-VDIFEKLPNPYG-LIRY-GVAPD------HIHVKNTYKTFDPVFLSPNYRF  108 (506)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHhcCCe-EEEEecCCCCcc-EEEE-eCCCC------CccHHHHHHHHHHHHhhCCeEE
Confidence            4678999999999999999765 56765 999988443321 1221 11122      12333444444332  345444


Q ss_pred             eEeeCCCCC--CchhhcCCccEEEEcCCCH
Q 020565          107 SVEKGDLSS--LDGEFYDKFDVVVVSCCSV  134 (324)
Q Consensus       107 ~~~~~~~~~--~~~~~~~~~diVi~~~~~~  134 (324)
                      .. +..+..  ..+++...||.||.++...
T Consensus       109 ~g-nv~VG~Dvt~eeL~~~YDAVIlAtGA~  137 (506)
T PTZ00188        109 FG-NVHVGVDLKMEELRNHYNCVIFCCGAS  137 (506)
T ss_pred             Ee-eeEecCccCHHHHHhcCCEEEEEcCCC
Confidence            32 222221  2355567899999998764

>PRK06184 hypothetical protein; Provisional

Probab=89.41  E-value=0.43  Score=47.33  Aligned_cols=34  Identities=18%  Similarity=0.369  Sum_probs=30.7

Q ss_pred             hcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (324)
Q Consensus        30 ~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d   64 (324)
                      .+..|+|||+|..|..+|-.|++.|+. ++|+|..
T Consensus         2 ~~~dVlIVGaGpaGl~~A~~La~~Gi~-v~viE~~   35 (502)
T PRK06184          2 TTTDVLIVGAGPTGLTLAIELARRGVS-FRLIEKA   35 (502)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCc-EEEEeCC
Confidence            457899999999999999999999996 9999874

>PRK06124 gluconate 5-dehydrogenase; Provisional

Probab=89.37  E-value=0.97  Score=40.08  Aligned_cols=35  Identities=23%  Similarity=0.297  Sum_probs=30.2

Q ss_pred             HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCC
Q 020565           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDR   64 (324)
Q Consensus        29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d   64 (324)
                      +..++++|.|+ |++|..+++.|+..|. ++.+++.+
T Consensus         9 ~~~k~ilItGas~~IG~~la~~l~~~G~-~v~~~~r~   44 (256)
T PRK06124          9 LAGQVALVTGSARGLGFEIARALAGAGA-HVLVNGRN   44 (256)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHcCC-eEEEEeCC
Confidence            67889999996 7899999999999997 58887763

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=89.36  E-value=1.7  Score=39.76  Aligned_cols=110  Identities=11%  Similarity=0.115  Sum_probs=53.0

Q ss_pred             CcEEEEcCchhHHHHHHHHHHhCCC-cEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHH---hhCCCCeEe
Q 020565           32 SHILVCGMKGTVAEFCKNIVLAGVG-SLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLK---DFNPMVRVS  107 (324)
Q Consensus        32 ~~VliiG~g~lGsei~k~L~~~Gv~-~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~---~lnp~v~v~  107 (324)
                      ++|+.||+|++--.........|.+ .++-+|.|.-.                      .+.+.+-++   .+.  -.+.
T Consensus       122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A----------------------~~~a~~lv~~~~~L~--~~m~  177 (276)
T PF03059_consen  122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEA----------------------NELARRLVASDLGLS--KRMS  177 (276)
T ss_dssp             -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHH----------------------HHHHHHHHH---HH---SSEE
T ss_pred             ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHH----------------------HHHHHHHHhhccccc--CCeE
Confidence            5999999999887766666666665 35555653211                      112222222   233  3444


Q ss_pred             EeeCCCCCCchhhcCCccEEEEcCCCH----HHHHHHHHHHHhccCCccEEEeeecCceEEEE
Q 020565          108 VEKGDLSSLDGEFYDKFDVVVVSCCSV----TTKKLINEKCRKLSKRVAFYTVDCRDSCGEIF  166 (324)
Q Consensus       108 ~~~~~~~~~~~~~~~~~diVi~~~~~~----~~~~~l~~~~~~~~~~ip~i~~~~~G~~g~v~  166 (324)
                      .+..+..+.. ..+.+||+|+.+..-.    +....+..+.+.+..+..++.=...|+.+++|
T Consensus       178 f~~~d~~~~~-~dl~~~DvV~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~Rsa~GlR~~LY  239 (276)
T PF03059_consen  178 FITADVLDVT-YDLKEYDVVFLAALVGMDAEPKEEILEHLAKHMAPGARLVVRSAHGLRSFLY  239 (276)
T ss_dssp             EEES-GGGG--GG----SEEEE-TT-S----SHHHHHHHHHHHS-TTSEEEEEE--GGGGGSS
T ss_pred             EEecchhccc-cccccCCEEEEhhhcccccchHHHHHHHHHhhCCCCcEEEEecchhhHHHcC
Confidence            5544443322 2367999998876432    44556777777666787788888889888554

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=89.36  E-value=0.51  Score=43.67  Aligned_cols=35  Identities=14%  Similarity=0.190  Sum_probs=31.3

Q ss_pred             cEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCcccc
Q 020565           33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTE   68 (324)
Q Consensus        33 ~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~   68 (324)
                      .|+|||.|-+|+.+|..|++.|. +++|+|...+..
T Consensus         1 DvvIIGaGi~G~~~A~~La~~G~-~V~l~e~~~~~~   35 (358)
T PF01266_consen    1 DVVIIGAGIAGLSTAYELARRGH-SVTLLERGDIGS   35 (358)
T ss_dssp             EEEEECTSHHHHHHHHHHHHTTS-EEEEEESSSTTS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCC-eEEEEeeccccc
Confidence            48999999999999999999999 699999985544

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=89.22  E-value=2.3  Score=46.00  Aligned_cols=93  Identities=16%  Similarity=0.254  Sum_probs=54.9

Q ss_pred             hcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCccc--CCCCcccCCccHHHHHHHHHHhhCCCCeEe
Q 020565           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLI--PPDENVYGGKTIAEVCCDSLKDFNPMVRVS  107 (324)
Q Consensus        30 ~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~--~~~di~~~G~~ka~~~~~~l~~lnp~v~v~  107 (324)
                      +..+|+|||.|..|...|..|++.|.. ++|+|...    .++...-+  ..-..   ++.-.+...+.+++++  +++.
T Consensus       429 ~~~kVaIIG~GPAGLsaA~~La~~G~~-VtV~E~~~----~~GG~l~~gip~~rl---~~e~~~~~~~~l~~~G--v~~~  498 (1006)
T PRK12775        429 KLGKVAICGSGPAGLAAAADLVKYGVD-VTVYEALH----VVGGVLQYGIPSFRL---PRDIIDREVQRLVDIG--VKIE  498 (1006)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCc-EEEEecCC----CCcceeeccCCccCC---CHHHHHHHHHHHHHCC--CEEE
Confidence            357899999999999999999999985 99998642    22222111  11112   3333444455555554  4443


Q ss_pred             EeeCCCC-CC-chhhc--CCccEEEEcCCC
Q 020565          108 VEKGDLS-SL-DGEFY--DKFDVVVVSCCS  133 (324)
Q Consensus       108 ~~~~~~~-~~-~~~~~--~~~diVi~~~~~  133 (324)
                      ... .+. +. .....  .+||.||.++..
T Consensus       499 ~~~-~vg~~~~~~~l~~~~~yDaViIATGa  527 (1006)
T PRK12775        499 TNK-VIGKTFTVPQLMNDKGFDAVFLGVGA  527 (1006)
T ss_pred             eCC-ccCCccCHHHHhhccCCCEEEEecCC
Confidence            321 111 11 12222  369999998875

>PRK15076 alpha-galactosidase; Provisional

Probab=89.18  E-value=1.5  Score=42.74  Aligned_cols=108  Identities=15%  Similarity=0.096  Sum_probs=57.8

Q ss_pred             CcEEEEcCchhHHHHHH--HHH-HhCC--CcEEEEcCCccccccCCCCcccCCCCcccCCccH-HHH-HHHHHHhhCCCC
Q 020565           32 SHILVCGMKGTVAEFCK--NIV-LAGV--GSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTI-AEV-CCDSLKDFNPMV  104 (324)
Q Consensus        32 ~~VliiG~g~lGsei~k--~L~-~~Gv--~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~k-a~~-~~~~l~~lnp~v  104 (324)
                      .+|.|||+|++|...+-  .++ ..+.  .+++|+|-+.                    .+.+ ++. +...+....+.+
T Consensus         2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~--------------------er~~~~~~l~~~~~~~~~~~~   61 (431)
T PRK15076          2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDP--------------------ERLEESEIVARKLAESLGASA   61 (431)
T ss_pred             cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCH--------------------HHHHHHHHHHHHHHHhcCCCe
Confidence            47999999998866554  554 2233  3799998622                    1111 122 233333444455


Q ss_pred             eEeEeeCCCCCCchhhcCCccEEEEcCCCH--HHHHHHH-HHHHhccCCccEEEeeecCceEEEE
Q 020565          105 RVSVEKGDLSSLDGEFYDKFDVVVVSCCSV--TTKKLIN-EKCRKLSKRVAFYTVDCRDSCGEIF  166 (324)
Q Consensus       105 ~v~~~~~~~~~~~~~~~~~~diVi~~~~~~--~~~~~l~-~~~~~~~~~ip~i~~~~~G~~g~v~  166 (324)
                      +++...     ...+.++++|+||.+....  ......+ ++..+  +|+-==...+.|.-|.++
T Consensus        62 ~i~~tt-----D~~eal~dADfVv~ti~vg~~~~~~~~De~Iplk--~G~~~~r~et~G~GG~~~  119 (431)
T PRK15076         62 KITATT-----DRREALQGADYVINAIQVGGYEPCTVTDFEIPKK--YGLRQTIGDTLGIGGIMR  119 (431)
T ss_pred             EEEEEC-----CHHHHhCCCCEEeEeeeeCCcchhhhhhhhhHHH--cCCeeecccCcCccchhh
Confidence            655432     1245678999999887643  2222233 45556  655311125555555443

>PRK12938 acetyacetyl-CoA reductase; Provisional

Probab=89.18  E-value=1.1  Score=39.38  Aligned_cols=31  Identities=19%  Similarity=0.330  Sum_probs=25.6

Q ss_pred             HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEE
Q 020565           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTL   60 (324)
Q Consensus        29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~l   60 (324)
                      |+++.++|.|+ |++|..+++.|+..|.. +.+
T Consensus         1 ~~~k~~lVtG~s~giG~~~a~~l~~~G~~-vv~   32 (246)
T PRK12938          1 MSQRIAYVTGGMGGIGTSICQRLHKDGFK-VVA   32 (246)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHcCCE-EEE
Confidence            34677899996 88999999999999976 444

>PRK07097 gluconate 5-dehydrogenase; Provisional

Probab=89.17  E-value=1  Score=40.27  Aligned_cols=35  Identities=23%  Similarity=0.229  Sum_probs=28.9

Q ss_pred             HHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        28 ~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      ++++++++|.|+ |++|.++++.|+..|.. +.+++.
T Consensus         7 ~~~~k~~lItGa~~~iG~~ia~~l~~~G~~-vv~~~~   42 (265)
T PRK07097          7 SLKGKIALITGASYGIGFAIAKAYAKAGAT-IVFNDI   42 (265)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCe-EEEEeC
Confidence            456788999996 68999999999999976 666654

>PRK07067 sorbitol dehydrogenase; Provisional

Probab=89.16  E-value=0.98  Score=40.12  Aligned_cols=36  Identities=17%  Similarity=0.259  Sum_probs=30.6

Q ss_pred             HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCCc
Q 020565           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRV   65 (324)
Q Consensus        29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d~   65 (324)
                      +++++++|.|. |++|.++++.|+..|.. +.++|.+.
T Consensus         4 l~~~~vlItGas~~iG~~ia~~l~~~G~~-v~~~~r~~   40 (257)
T PRK07067          4 LQGKVALLTGAASGIGEAVAERYLAEGAR-VVIADIKP   40 (257)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHcCCE-EEEEcCCH
Confidence            56788999996 88999999999999975 77877654

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=89.16  E-value=2.5  Score=38.24  Aligned_cols=34  Identities=18%  Similarity=0.141  Sum_probs=29.7

Q ss_pred             hcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        30 ~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      ...+|+|+|+|++|..++..+...|+.+++.+|.
T Consensus       120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~  153 (280)
T TIGR03366       120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADP  153 (280)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECC
Confidence            5678999999999999999998999987877764

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=89.11  E-value=0.46  Score=39.76  Aligned_cols=40  Identities=13%  Similarity=0.150  Sum_probs=29.9

Q ss_pred             HHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccc
Q 020565           27 RRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVT   67 (324)
Q Consensus        27 ~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~   67 (324)
                      -.|..++++|+|.|-+|.-+|+.|...|.. +++.|.|.+.
T Consensus        19 ~~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~-V~V~e~DPi~   58 (162)
T PF00670_consen   19 LMLAGKRVVVIGYGKVGKGIARALRGLGAR-VTVTEIDPIR   58 (162)
T ss_dssp             S--TTSEEEEE--SHHHHHHHHHHHHTT-E-EEEE-SSHHH
T ss_pred             eeeCCCEEEEeCCCcccHHHHHHHhhCCCE-EEEEECChHH
Confidence            467788999999999999999999999975 8998886644

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=89.11  E-value=2.3  Score=41.89  Aligned_cols=60  Identities=17%  Similarity=0.217  Sum_probs=40.5

Q ss_pred             CCCCHHHHHHhHHHHHh---hhHHH-HHHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565            4 EELTEQETALYDRQIRV---WGADA-QRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (324)
Q Consensus         4 ~~l~~~e~~ry~Rqi~l---~g~~~-q~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d   64 (324)
                      .+++--.++||--..-.   |...- ...-...+|+|||.|..|...|..|++.|.. ++++|..
T Consensus       110 ~~v~i~~l~r~~~~~~~~~~~~~~~~~~~~~~~~V~IIG~GpaGl~aA~~l~~~G~~-V~i~e~~  173 (467)
T TIGR01318       110 GAVTIGNLERYITDTALAMGWRPDLSHVVPTGKRVAVIGAGPAGLACADILARAGVQ-VVVFDRH  173 (467)
T ss_pred             CCccHHHHHHHHHHHHHHhCCCCCCCCcCCCCCeEEEECCCHHHHHHHHHHHHcCCe-EEEEecC
Confidence            34666667777533211   11100 0112467899999999999999999999986 8888764

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PRK08628 short chain dehydrogenase; Provisional

Probab=89.11  E-value=1.2  Score=39.59  Aligned_cols=34  Identities=18%  Similarity=0.230  Sum_probs=28.6

Q ss_pred             HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      |++++++|.|. |++|..+++.|+..|.. +.+++.
T Consensus         5 l~~~~ilItGasggiG~~la~~l~~~G~~-v~~~~r   39 (258)
T PRK08628          5 LKDKVVIVTGGASGIGAAISLRLAEEGAI-PVIFGR   39 (258)
T ss_pred             cCCCEEEEeCCCChHHHHHHHHHHHcCCc-EEEEcC
Confidence            67889999995 78999999999999986 666544

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=89.11  E-value=0.43  Score=45.80  Aligned_cols=34  Identities=15%  Similarity=0.278  Sum_probs=30.5

Q ss_pred             cCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCc
Q 020565           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV   65 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~   65 (324)
                      ...|+|||.|..|..+|..|++.|+. ++|+|...
T Consensus         2 ~~dV~IVGaG~aGl~~A~~L~~~G~~-v~viE~~~   35 (405)
T PRK05714          2 RADLLIVGAGMVGSALALALQGSGLE-VLLLDGGP   35 (405)
T ss_pred             CccEEEECccHHHHHHHHHHhcCCCE-EEEEcCCC
Confidence            35799999999999999999999985 99999764

>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=89.10  E-value=1.8  Score=41.34  Aligned_cols=123  Identities=15%  Similarity=0.111  Sum_probs=74.8

Q ss_pred             hcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEe-E
Q 020565           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS-V  108 (324)
Q Consensus        30 ~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~-~  108 (324)
                      .++.|-|||++-.|+.++-|.+.-|.. +.+...+.-..+.+-.+.--.. ++  .+-+-.|.....|+.  |..-+- +
T Consensus         2 ~~~~iGviGLaVMG~NLaLNi~~~G~~-VavyNRt~~ktd~f~~~~~~~k-~i--~~~~sieefV~~Le~--PRkI~lMV   75 (473)
T COG0362           2 MKADIGVIGLAVMGSNLALNIADHGYT-VAVYNRTTEKTDEFLAERAKGK-NI--VPAYSIEEFVASLEK--PRKILLMV   75 (473)
T ss_pred             CccceeeEehhhhhHHHHHHHHhcCce-EEEEeCCHHHHHHHHHhCccCC-Cc--cccCcHHHHHHHhcC--CceEEEEE
Confidence            356799999999999999999999987 7777664433322211111011 22  155555555665555  432111 1


Q ss_pred             eeCC-CCC---CchhhcCCccEEEEcCC-CHHHHHHHHHHHHhccCCccEEEeeecC
Q 020565          109 EKGD-LSS---LDGEFYDKFDVVVVSCC-SVTTKKLINEKCRKLSKRVAFYTVDCRD  160 (324)
Q Consensus       109 ~~~~-~~~---~~~~~~~~~diVi~~~~-~~~~~~~l~~~~~~~~~~ip~i~~~~~G  160 (324)
                      .... ++.   ....+++.-|+||+... ++..-.+-++...+  .++-||-.++.|
T Consensus        76 kAG~~VD~~I~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~--~Gi~FvG~GVSG  130 (473)
T COG0362          76 KAGTPVDAVIEQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSE--KGILFVGMGVSG  130 (473)
T ss_pred             ecCCcHHHHHHHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHh--cCCeEEeccccc
Confidence            1111 122   23456788999999875 44444445566667  799999888876

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=89.09  E-value=0.44  Score=45.33  Aligned_cols=34  Identities=18%  Similarity=0.156  Sum_probs=30.5

Q ss_pred             cCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCc
Q 020565           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV   65 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~   65 (324)
                      ...|+|||.|..|+.+|..|++.|+. ++|+|...
T Consensus         7 ~~dViIVGaG~~Gl~~A~~L~~~G~~-v~liE~~~   40 (388)
T PRK07494          7 HTDIAVIGGGPAGLAAAIALARAGAS-VALVAPEP   40 (388)
T ss_pred             CCCEEEECcCHHHHHHHHHHhcCCCe-EEEEeCCC
Confidence            45799999999999999999999986 99999864

>TIGR01179 galE UDP-glucose-4-epimerase

Probab=89.00  E-value=3.1  Score=38.01  Aligned_cols=30  Identities=20%  Similarity=0.316  Sum_probs=24.8

Q ss_pred             cEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           33 HILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        33 ~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      +|+|.|+ |.+|..+++.|...|.. ++++|.
T Consensus         1 kvlV~GatG~iG~~l~~~l~~~g~~-V~~~~~   31 (328)
T TIGR01179         1 KILVTGGAGYIGSHTVRQLLESGHE-VVVLDN   31 (328)
T ss_pred             CEEEeCCCCHHHHHHHHHHHhCCCe-EEEEeC
Confidence            5899985 88999999999999975 666653

This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.

>PRK06823 ornithine cyclodeaminase; Validated

Probab=89.00  E-value=2.1  Score=39.88  Aligned_cols=80  Identities=15%  Similarity=0.036  Sum_probs=56.1

Q ss_pred             HHHHh---cCcEEEEcCchhHHHHHHHHHH-hCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhC
Q 020565           26 QRRLS---KSHILVCGMKGTVAEFCKNIVL-AGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFN  101 (324)
Q Consensus        26 q~~l~---~~~VliiG~g~lGsei~k~L~~-~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~ln  101 (324)
                      -+.|.   .+++.|+|+|..+-.-+..+.. -.+.++.++|.                      ...|++..++.+++..
T Consensus       120 ~~~La~~d~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r----------------------~~~~a~~~~~~~~~~~  177 (315)
T PRK06823        120 ARLLAPQHVSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGR----------------------SETALEEYRQYAQALG  177 (315)
T ss_pred             HHHhcCCCCCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECC----------------------CHHHHHHHHHHHHhcC
Confidence            34554   4789999999999888887664 35677777655                      5668888888887643


Q ss_pred             CCCeEeEeeCCCCCCchhhcCCccEEEEcCCCH
Q 020565          102 PMVRVSVEKGDLSSLDGEFYDKFDVVVVSCCSV  134 (324)
Q Consensus       102 p~v~v~~~~~~~~~~~~~~~~~~diVi~~~~~~  134 (324)
                        +.+...     +...+...++|+|+.|+.+.
T Consensus       178 --~~v~~~-----~~~~~av~~ADIV~taT~s~  203 (315)
T PRK06823        178 --FAVNTT-----LDAAEVAHAANLIVTTTPSR  203 (315)
T ss_pred             --CcEEEE-----CCHHHHhcCCCEEEEecCCC
Confidence              333332     23466778999999988653

>PRK07890 short chain dehydrogenase; Provisional

Probab=88.96  E-value=1  Score=39.85  Aligned_cols=34  Identities=21%  Similarity=0.303  Sum_probs=29.1

Q ss_pred             HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      |.+++|+|.|. |++|..+++.|+.-|. ++.++|.
T Consensus         3 l~~k~vlItGa~~~IG~~la~~l~~~G~-~V~~~~r   37 (258)
T PRK07890          3 LKGKVVVVSGVGPGLGRTLAVRAARAGA-DVVLAAR   37 (258)
T ss_pred             cCCCEEEEECCCCcHHHHHHHHHHHcCC-EEEEEeC
Confidence            46788999996 7899999999999997 5778765

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=88.95  E-value=0.55  Score=44.40  Aligned_cols=33  Identities=12%  Similarity=0.088  Sum_probs=29.8

Q ss_pred             cEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCcc
Q 020565           33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVV   66 (324)
Q Consensus        33 ~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v   66 (324)
                      .|+|||.|-+|+.+|..|++.|. +++|+|...+
T Consensus         2 dvvIIGaGi~G~s~A~~La~~g~-~V~l~e~~~~   34 (380)
T TIGR01377         2 DVIVVGAGIMGCFAAYHLAKHGK-KTLLLEQFDL   34 (380)
T ss_pred             cEEEECCCHHHHHHHHHHHHCCC-eEEEEeccCC
Confidence            58999999999999999999997 5999998654

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional

Probab=88.94  E-value=1.9  Score=40.55  Aligned_cols=92  Identities=17%  Similarity=0.184  Sum_probs=51.4

Q ss_pred             CcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEee
Q 020565           32 SHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEK  110 (324)
Q Consensus        32 ~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~  110 (324)
                      .+|+|+|+ |.+|.++++.|...|...+.+.             .+.+..+.   |+.-.         ++ ...+... 
T Consensus         2 ~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~-------------~l~s~~~~---g~~l~---------~~-g~~i~v~-   54 (334)
T PRK14874          2 YNVAVVGATGAVGREMLNILEERNFPVDKLR-------------LLASARSA---GKELS---------FK-GKELKVE-   54 (334)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCcceEE-------------EEEccccC---CCeee---------eC-CceeEEe-
Confidence            47999997 6799999999998766533221             01111222   33210         11 1222222 


Q ss_pred             CCCCCCchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEee
Q 020565          111 GDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVD  157 (324)
Q Consensus       111 ~~~~~~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~~  157 (324)
                       ++.   ...++++|+||.|+.....+....++ .+  .+..+|+.+
T Consensus        55 -d~~---~~~~~~vDvVf~A~g~g~s~~~~~~~-~~--~G~~VIDlS   94 (334)
T PRK14874         55 -DLT---TFDFSGVDIALFSAGGSVSKKYAPKA-AA--AGAVVIDNS   94 (334)
T ss_pred             -eCC---HHHHcCCCEEEECCChHHHHHHHHHH-Hh--CCCEEEECC
Confidence             111   22357899999999877666655554 34  455566433

>PRK08862 short chain dehydrogenase; Provisional

Probab=88.94  E-value=1.3  Score=38.97  Aligned_cols=34  Identities=21%  Similarity=0.195  Sum_probs=28.5

Q ss_pred             HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      ++.++++|.|+ +|+|.++++.|+..|.. +.+++.
T Consensus         3 ~~~k~~lVtGas~GIG~aia~~la~~G~~-V~~~~r   37 (227)
T PRK08862          3 IKSSIILITSAGSVLGRTISCHFARLGAT-LILCDQ   37 (227)
T ss_pred             CCCeEEEEECCccHHHHHHHHHHHHCCCE-EEEEcC
Confidence            56789999997 57999999999999986 777654

>PRK08013 oxidoreductase; Provisional

Probab=88.93  E-value=0.47  Score=45.55  Aligned_cols=34  Identities=12%  Similarity=0.240  Sum_probs=30.6

Q ss_pred             cCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCc
Q 020565           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV   65 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~   65 (324)
                      +..|+|||+|..|..+|-.|++.|+. ++|+|...
T Consensus         3 ~~dV~IvGaGpaGl~~A~~La~~G~~-v~viE~~~   36 (400)
T PRK08013          3 SVDVVIAGGGMVGLAVACGLQGSGLR-VAVLEQRV   36 (400)
T ss_pred             cCCEEEECcCHHHHHHHHHHhhCCCE-EEEEeCCC
Confidence            46899999999999999999999986 89998754

>TIGR02028 ChlP geranylgeranyl reductase

Probab=88.91  E-value=0.49  Score=45.55  Aligned_cols=31  Identities=19%  Similarity=0.285  Sum_probs=28.6

Q ss_pred             cEEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565           33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (324)
Q Consensus        33 ~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d   64 (324)
                      +|+|||.|+.|+.+|..|++.|+. +.++|..
T Consensus         2 ~VvIVGaGPAG~~aA~~la~~G~~-V~llE~~   32 (398)
T TIGR02028         2 RVAVVGGGPAGASAAETLASAGIQ-TFLLERK   32 (398)
T ss_pred             eEEEECCcHHHHHHHHHHHhCCCc-EEEEecC
Confidence            699999999999999999999986 8888864

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=88.90  E-value=1.9  Score=42.23  Aligned_cols=34  Identities=15%  Similarity=0.254  Sum_probs=30.2

Q ss_pred             hcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (324)
Q Consensus        30 ~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d   64 (324)
                      ...+|+|||.|..|.+.|..|++.|. +++++|..
T Consensus       139 ~~~~VvIIGgGpaGl~aA~~l~~~g~-~V~lie~~  172 (457)
T PRK11749        139 TGKKVAVIGAGPAGLTAAHRLARKGY-DVTIFEAR  172 (457)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCC-eEEEEccC
Confidence            45789999999999999999999997 49999864

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=88.90  E-value=2.8  Score=41.34  Aligned_cols=34  Identities=15%  Similarity=0.203  Sum_probs=30.4

Q ss_pred             hcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (324)
Q Consensus        30 ~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d   64 (324)
                      ...+|+|||.|..|...|..|++.|.. ++++|..
T Consensus       142 ~~~~VvIIGaGpAGl~aA~~l~~~G~~-V~vie~~  175 (471)
T PRK12810        142 TGKKVAVVGSGPAGLAAADQLARAGHK-VTVFERA  175 (471)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCCc-EEEEecC
Confidence            346899999999999999999999985 9999874

>PRK06185 hypothetical protein; Provisional

Probab=88.88  E-value=0.55  Score=44.98  Aligned_cols=35  Identities=14%  Similarity=0.179  Sum_probs=31.3

Q ss_pred             hcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCc
Q 020565           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV   65 (324)
Q Consensus        30 ~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~   65 (324)
                      .+..|+|||.|.+|..+|..|++.|+. ++|+|...
T Consensus         5 ~~~dV~IvGgG~~Gl~~A~~La~~G~~-v~liE~~~   39 (407)
T PRK06185          5 ETTDCCIVGGGPAGMMLGLLLARAGVD-VTVLEKHA   39 (407)
T ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCc-EEEEecCC
Confidence            457899999999999999999999986 99999753

>PRK07904 short chain dehydrogenase; Provisional

Probab=88.86  E-value=2.2  Score=38.06  Aligned_cols=33  Identities=15%  Similarity=0.178  Sum_probs=26.2

Q ss_pred             cCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           31 KSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        31 ~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      ..+|+|.|+ ||+|.++++.|+..|--++++++.
T Consensus         8 ~~~vlItGas~giG~~la~~l~~~gg~~V~~~~r   41 (253)
T PRK07904          8 PQTILLLGGTSEIGLAICERYLKNAPARVVLAAL   41 (253)
T ss_pred             CcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeC
Confidence            456999996 789999999999986445777654

>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364

Probab=88.82  E-value=0.7  Score=43.54  Aligned_cols=34  Identities=9%  Similarity=0.152  Sum_probs=30.7

Q ss_pred             cEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccc
Q 020565           33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVT   67 (324)
Q Consensus        33 ~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~   67 (324)
                      .|+|||.|-+|+.+|..|+..|.. ++|+|.+.+.
T Consensus         2 dv~IIG~Gi~G~s~A~~L~~~G~~-V~vle~~~~~   35 (365)
T TIGR03364         2 DLIIVGAGILGLAHAYAAARRGLS-VTVIERSSRA   35 (365)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCe-EEEEeCCCCC
Confidence            699999999999999999999974 9999987754

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.

>PRK06947 glucose-1-dehydrogenase; Provisional

Probab=88.80  E-value=1.6  Score=38.46  Aligned_cols=29  Identities=14%  Similarity=0.178  Sum_probs=24.1

Q ss_pred             CcEEEEcC-chhHHHHHHHHHHhCCCcEEEE
Q 020565           32 SHILVCGM-KGTVAEFCKNIVLAGVGSLTLM   61 (324)
Q Consensus        32 ~~VliiG~-g~lGsei~k~L~~~Gv~~i~lv   61 (324)
                      ++|+|.|+ |++|..+++.|+..|.. +.++
T Consensus         3 k~ilItGas~giG~~la~~l~~~g~~-v~~~   32 (248)
T PRK06947          3 KVVLITGASRGIGRATAVLAAARGWS-VGIN   32 (248)
T ss_pred             cEEEEeCCCCcHHHHHHHHHHHCCCE-EEEE
Confidence            57999996 68999999999999975 4443

>KOG0409 consensus Predicted dehydrogenase [General function prediction only]

Probab=88.75  E-value=0.86  Score=41.84  Aligned_cols=140  Identities=16%  Similarity=0.176  Sum_probs=77.0

Q ss_pred             CCHHHHHHhHHHHHhh-hHHHHHHH--hcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCc
Q 020565            6 LTEQETALYDRQIRVW-GADAQRRL--SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDEN   82 (324)
Q Consensus         6 l~~~e~~ry~Rqi~l~-g~~~q~~l--~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di   82 (324)
                      ++....+-++|.+.-- ....-.+.  ...+|-.||+|-.|+.+++||..+|.. +|++|.+.-....+..        -
T Consensus         7 ~~~~~l~~~~~~~~~~~~~~~s~~~~~s~~~iGFIGLG~MG~~M~~nLik~G~k-VtV~dr~~~k~~~f~~--------~   77 (327)
T KOG0409|consen    7 LAPSILEAFSRRLVKASETAMSSRITPSKTRIGFIGLGNMGSAMVSNLIKAGYK-VTVYDRTKDKCKEFQE--------A   77 (327)
T ss_pred             cccHHHHhhcccccccccccccccCCcccceeeEEeeccchHHHHHHHHHcCCE-EEEEeCcHHHHHHHHH--------h
Confidence            4555566666654441 11111223  378899999999999999999999987 9999853322221111        0


Q ss_pred             ccCCccHHHHHHHHHHhhCCCCeEeEeeCCCC--C-C--chhhcC-----CccEEEEcCCCHHHHHHHHHHHHhccCCcc
Q 020565           83 VYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLS--S-L--DGEFYD-----KFDVVVVSCCSVTTKKLINEKCRKLSKRVA  152 (324)
Q Consensus        83 ~~~G~~ka~~~~~~l~~lnp~v~v~~~~~~~~--~-~--~~~~~~-----~~diVi~~~~~~~~~~~l~~~~~~~~~~ip  152 (324)
                         |-.-++.=++-.+  ..++-+........  + .  ..-.++     +...|-.++-++.+...|.+..+.  .+--
T Consensus        78 ---Ga~v~~sPaeVae--~sDvvitmv~~~~~v~~v~~g~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~--~~~~  150 (327)
T KOG0409|consen   78 ---GARVANSPAEVAE--DSDVVITMVPNPKDVKDVLLGKSGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISN--KGGR  150 (327)
T ss_pred             ---chhhhCCHHHHHh--hcCEEEEEcCChHhhHHHhcCCCcceeeccCCCceEEeccccCHHHHHHHHHHHHh--CCCe
Confidence               2211111111111  12233333222211  0 0  011111     122244455688889999999988  8888


Q ss_pred             EEEeeecCc
Q 020565          153 FYTVDCRDS  161 (324)
Q Consensus       153 ~i~~~~~G~  161 (324)
                      |+++-+.|-
T Consensus       151 ~vDAPVSGg  159 (327)
T KOG0409|consen  151 FVDAPVSGG  159 (327)
T ss_pred             EEeccccCC
Confidence            898888773

>PRK05872 short chain dehydrogenase; Provisional

Probab=88.71  E-value=2  Score=39.33  Aligned_cols=34  Identities=29%  Similarity=0.485  Sum_probs=29.2

Q ss_pred             HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      +++++|+|.|. ||+|..+++.|+..|. ++.+++.
T Consensus         7 l~gk~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r   41 (296)
T PRK05872          7 LAGKVVVVTGAARGIGAELARRLHARGA-KLALVDL   41 (296)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence            67789999996 7899999999999997 4777765

>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase

Probab=88.68  E-value=0.58  Score=45.52  Aligned_cols=31  Identities=23%  Similarity=0.171  Sum_probs=28.2

Q ss_pred             CcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        32 ~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      .+|+|||.|-+|+++|..|++.|+. ++|++.
T Consensus         1 ~~VvVIGgGlAGleaA~~LAr~G~~-V~LiE~   31 (433)
T TIGR00137         1 TPVHVIGGGLAGSEAAWQLAQAGVP-VILYEM   31 (433)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCc-EEEEec
Confidence            3799999999999999999999986 888874

This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.

>PLN02503 fatty acyl-CoA reductase 2

Probab=88.67  E-value=2.7  Score=42.77  Aligned_cols=132  Identities=17%  Similarity=0.157  Sum_probs=73.6

Q ss_pred             hHHHHHHHhcCcEEEEcC-chhHHHHHHHHHHhC--CCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHH
Q 020565           22 GADAQRRLSKSHILVCGM-KGTVAEFCKNIVLAG--VGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLK   98 (324)
Q Consensus        22 g~~~q~~l~~~~VliiG~-g~lGsei~k~L~~~G--v~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~   98 (324)
                      |..-++-+++++|+|-|+ |-+|..+++.|.+.+  +++|.+.....-..+-..|..          ..-....+.+.++
T Consensus       110 ~~~I~~f~~~k~VlVTGaTGFLGk~LlekLLr~~~~v~kIy~LvR~k~~~~a~eRl~----------~~l~~~~lf~~l~  179 (605)
T PLN02503        110 GIGIAEFLRGKNFLITGATGFLAKVLIEKILRTNPDVGKIYLLIKAKDKEAAIERLK----------NEVIDAELFKCLQ  179 (605)
T ss_pred             CcchhhhhcCCEEEEcCCchHHHHHHHHHHHHhCCCCcEEEEEEecCCchhHHHHHH----------HHHhhhhhHHHHH
Confidence            445578899999999998 669999999999865  677877644211111000100          0000011223455


Q ss_pred             hhCCC-------CeEeEeeCCCCCC--------chhhcCCccEEEEcCCC------HHHH--------HHHHHHHHhccC
Q 020565           99 DFNPM-------VRVSVEKGDLSSL--------DGEFYDKFDVVVVSCCS------VTTK--------KLINEKCRKLSK  149 (324)
Q Consensus        99 ~lnp~-------v~v~~~~~~~~~~--------~~~~~~~~diVi~~~~~------~~~~--------~~l~~~~~~~~~  149 (324)
                      +.+|.       -++..+..++.+.        ...+.++.|+||-+...      ++..        ..+-++|++.+.
T Consensus       180 ~~~g~~~~~~~~~Ki~~v~GDl~d~~LGLs~~~~~~L~~~vDiVIH~AA~v~f~~~~~~a~~vNV~GT~nLLelA~~~~~  259 (605)
T PLN02503        180 ETHGKSYQSFMLSKLVPVVGNVCESNLGLEPDLADEIAKEVDVIINSAANTTFDERYDVAIDINTRGPCHLMSFAKKCKK  259 (605)
T ss_pred             HhcCccccccccccEEEEEeeCCCcccCCCHHHHHHHHhcCCEEEECccccccccCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            55552       3566666666542        12334679999976532      2221        334566766222


Q ss_pred             CccEEEeeecCceE
Q 020565          150 RVAFYTVDCRDSCG  163 (324)
Q Consensus       150 ~ip~i~~~~~G~~g  163 (324)
                      -..|+++++...+|
T Consensus       260 lk~fV~vSTayVyG  273 (605)
T PLN02503        260 LKLFLQVSTAYVNG  273 (605)
T ss_pred             CCeEEEccCceeec
Confidence            24578777654444

>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA

Probab=88.64  E-value=5.2  Score=35.00  Aligned_cols=92  Identities=14%  Similarity=0.146  Sum_probs=56.1

Q ss_pred             EEEEcC-chhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEeeCC
Q 020565           34 ILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGD  112 (324)
Q Consensus        34 VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~~~  112 (324)
                      |+|+|+ |.+|..++..|...|.. ++.+=.               .      .   .....+.++..  .+.+  ...+
T Consensus         1 I~V~GatG~~G~~v~~~L~~~~~~-V~~l~R---------------~------~---~~~~~~~l~~~--g~~v--v~~d   51 (233)
T PF05368_consen    1 ILVTGATGNQGRSVVRALLSAGFS-VRALVR---------------D------P---SSDRAQQLQAL--GAEV--VEAD   51 (233)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTGC-EEEEES---------------S------S---HHHHHHHHHHT--TTEE--EES-
T ss_pred             CEEECCccHHHHHHHHHHHhCCCC-cEEEEe---------------c------c---chhhhhhhhcc--cceE--eecc
Confidence            789996 88999999999997765 444211               0      1   11123334443  3333  2334


Q ss_pred             CCC--CchhhcCCccEEEEcCCC-----HHHHHHHHHHHHhccCCccEEEe
Q 020565          113 LSS--LDGEFYDKFDVVVVSCCS-----VTTKKLINEKCRKLSKRVAFYTV  156 (324)
Q Consensus       113 ~~~--~~~~~~~~~diVi~~~~~-----~~~~~~l~~~~~~~~~~ip~i~~  156 (324)
                      +.+  .....++++|.|+.++..     .+....+-+.|.+  .++..+.-
T Consensus        52 ~~~~~~l~~al~g~d~v~~~~~~~~~~~~~~~~~li~Aa~~--agVk~~v~  100 (233)
T PF05368_consen   52 YDDPESLVAALKGVDAVFSVTPPSHPSELEQQKNLIDAAKA--AGVKHFVP  100 (233)
T ss_dssp             TT-HHHHHHHHTTCSEEEEESSCSCCCHHHHHHHHHHHHHH--HT-SEEEE
T ss_pred             cCCHHHHHHHHcCCceEEeecCcchhhhhhhhhhHHHhhhc--cccceEEE
Confidence            433  345678999999988872     3345567788888  67766543

NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....

>PRK08324 short chain dehydrogenase; Validated

Probab=88.62  E-value=2.9  Score=43.32  Aligned_cols=33  Identities=24%  Similarity=0.278  Sum_probs=28.3

Q ss_pred             hcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           30 SKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        30 ~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      ...+|+|.|+ |++|..+++.|+..|. +++++|.
T Consensus       421 ~gk~vLVTGasggIG~~la~~L~~~Ga-~Vvl~~r  454 (681)
T PRK08324        421 AGKVALVTGAAGGIGKATAKRLAAEGA-CVVLADL  454 (681)
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCcC-EEEEEeC
Confidence            4468999994 9999999999999998 5888775

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=88.62  E-value=0.51  Score=45.32  Aligned_cols=33  Identities=3%  Similarity=0.118  Sum_probs=30.2

Q ss_pred             cCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d   64 (324)
                      ...|+|||+|..|..+|-.|++.|+. ++++|..
T Consensus         4 ~~dV~IvGaG~~Gl~~A~~L~~~G~~-v~viE~~   36 (405)
T PRK08850          4 SVDVAIIGGGMVGLALAAALKESDLR-IAVIEGQ   36 (405)
T ss_pred             cCCEEEECccHHHHHHHHHHHhCCCE-EEEEcCC
Confidence            46899999999999999999999997 8999974

>TIGR00715 precor6x_red precorrin-6x reductase

Probab=88.61  E-value=3.6  Score=37.16  Aligned_cols=93  Identities=14%  Similarity=0.243  Sum_probs=55.9

Q ss_pred             CcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEeeC
Q 020565           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKG  111 (324)
Q Consensus        32 ~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~~  111 (324)
                      .+|+|+|+.+-|..+++.|...|..-+..+=.+      -....+                     .+. +...  +...
T Consensus         1 m~ILvlGGT~egr~la~~L~~~g~~v~~s~~t~------~~~~~~---------------------~~~-g~~~--v~~g   50 (256)
T TIGR00715         1 MTVLLMGGTVDSRAIAKGLIAQGIEILVTVTTS------EGKHLY---------------------PIH-QALT--VHTG   50 (256)
T ss_pred             CeEEEEechHHHHHHHHHHHhCCCeEEEEEccC------Cccccc---------------------ccc-CCce--EEEC
Confidence            379999998889999999999996533222111      011000                     000 0111  1222


Q ss_pred             CCCC-Cchhhc--CCccEEEEcCCCHHHH--HHHHHHHHhccCCccEEEe
Q 020565          112 DLSS-LDGEFY--DKFDVVVVSCCSVTTK--KLINEKCRKLSKRVAFYTV  156 (324)
Q Consensus       112 ~~~~-~~~~~~--~~~diVi~~~~~~~~~--~~l~~~~~~~~~~ip~i~~  156 (324)
                      .++. ...+++  .+.|+||+++.+++..  ..+.+.|++  .++|++--
T Consensus        51 ~l~~~~l~~~l~~~~i~~VIDAtHPfA~~is~~a~~a~~~--~~ipylR~   98 (256)
T TIGR00715        51 ALDPQELREFLKRHSIDILVDATHPFAAQITTNATAVCKE--LGIPYVRF   98 (256)
T ss_pred             CCCHHHHHHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHHH--hCCcEEEE
Confidence            2222 122333  3588999999998854  568889999  99999855

This enzyme was found to be a monomer by gel filtration.

>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=88.57  E-value=2.5  Score=39.83  Aligned_cols=90  Identities=13%  Similarity=0.197  Sum_probs=51.8

Q ss_pred             CcEEEEcC-chhHHHHHHHHHHhCCCcEE--EEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeE
Q 020565           32 SHILVCGM-KGTVAEFCKNIVLAGVGSLT--LMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV  108 (324)
Q Consensus        32 ~~VliiG~-g~lGsei~k~L~~~Gv~~i~--lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~  108 (324)
                      .+|+|+|+ |-+|.|+++.|...+...+.  .+-.               .+..   |+.-        . .. ......
T Consensus         5 ~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s---------------~~~a---G~~l--------~-~~-~~~l~~   56 (336)
T PRK05671          5 LDIAVVGATGTVGEALVQILEERDFPVGTLHLLAS---------------SESA---GHSV--------P-FA-GKNLRV   56 (336)
T ss_pred             CEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEEC---------------cccC---CCee--------c-cC-CcceEE
Confidence            57999997 77999999999976554333  3322               2223   5431        1 11 112222


Q ss_pred             eeCCCCCCchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEee
Q 020565          109 EKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVD  157 (324)
Q Consensus       109 ~~~~~~~~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~~  157 (324)
                      .     +.....++++|+|+.+..+.... .+-..+.+  .++.+|+.+
T Consensus        57 ~-----~~~~~~~~~vD~vFla~p~~~s~-~~v~~~~~--~G~~VIDlS   97 (336)
T PRK05671         57 R-----EVDSFDFSQVQLAFFAAGAAVSR-SFAEKARA--AGCSVIDLS   97 (336)
T ss_pred             e-----eCChHHhcCCCEEEEcCCHHHHH-HHHHHHHH--CCCeEEECc
Confidence            1     11112257899999999764444 45555566  677777554

>PRK12743 oxidoreductase; Provisional

Probab=88.56  E-value=1.7  Score=38.58  Aligned_cols=30  Identities=10%  Similarity=0.120  Sum_probs=24.8

Q ss_pred             cCcEEEEcC-chhHHHHHHHHHHhCCCcEEEE
Q 020565           31 KSHILVCGM-KGTVAEFCKNIVLAGVGSLTLM   61 (324)
Q Consensus        31 ~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lv   61 (324)
                      .++|+|.|+ |++|.++++.|+..|.. +.++
T Consensus         2 ~k~vlItGas~giG~~~a~~l~~~G~~-V~~~   32 (256)
T PRK12743          2 AQVAIVTASDSGIGKACALLLAQQGFD-IGIT   32 (256)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCE-EEEE
Confidence            457999996 68999999999999985 5454

>PLN02823 spermine synthase

Probab=88.54  E-value=1.4  Score=41.48  Aligned_cols=57  Identities=9%  Similarity=0.024  Sum_probs=34.2

Q ss_pred             CCHHHHHHhHHHHHhhhHHHHHHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCc
Q 020565            6 LTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV   65 (324)
Q Consensus         6 l~~~e~~ry~Rqi~l~g~~~q~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~   65 (324)
                      .++.+.-.|.+-+.....-..  -.-.+|||+|.|+ |+.....|...++.++++||-|.
T Consensus        81 s~~~de~~YhE~l~h~~l~~~--~~pk~VLiiGgG~-G~~~re~l~~~~~~~v~~VEiD~  137 (336)
T PLN02823         81 SAEADEFVYHESLVHPALLHH--PNPKTVFIMGGGE-GSTAREVLRHKTVEKVVMCDIDQ  137 (336)
T ss_pred             cccchHHHHHHHHHhHHHhhC--CCCCEEEEECCCc-hHHHHHHHhCCCCCeEEEEECCH
Confidence            344444567775544433322  2456899999983 44443444446788999987643

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=88.52  E-value=14  Score=32.95  Aligned_cols=96  Identities=16%  Similarity=0.250  Sum_probs=52.8

Q ss_pred             HHHHHHhHHHHHh--hhHHHH---------HHH-hcCcEEEEcCchhHHHHHHHHHH---hCCCcEEEEcCCccccccCC
Q 020565            8 EQETALYDRQIRV--WGADAQ---------RRL-SKSHILVCGMKGTVAEFCKNIVL---AGVGSLTLMDDRVVTEEAWS   72 (324)
Q Consensus         8 ~~e~~ry~Rqi~l--~g~~~q---------~~l-~~~~VliiG~g~lGsei~k~L~~---~Gv~~i~lvD~d~v~~~nl~   72 (324)
                      +.-.+.||.+++-  -|-+..         ..+ ...+|+-+||| .|..... |++   ..-.+++.+|.         
T Consensus        22 ~~~a~~yd~~~~~~~p~y~~~~~~~~~~~~~~~~~~~~vLDlGcG-tG~~~~~-l~~~~~~~~~~v~gvD~---------   90 (247)
T PRK15451         22 ERVAEVFPDMIQRSVPGYSNIISMIGMLAERFVQPGTQVYDLGCS-LGAATLS-VRRNIHHDNCKIIAIDN---------   90 (247)
T ss_pred             hHHHHhhhhHHHhcCCChHHHHHHHHHHHHHhCCCCCEEEEEccc-CCHHHHH-HHHhcCCCCCeEEEEeC---------
Confidence            3335578877762  232221         112 45789999998 4665544 333   12246888886         


Q ss_pred             CCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEeeCCCCCCchhhcCCccEEEEc
Q 020565           73 ANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEFYDKFDVVVVS  130 (324)
Q Consensus        73 r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~~~~~~~~~~~~~~~diVi~~  130 (324)
                                   ...-.+.+.+++.+.....+++....++.+..   +.++|+|+..
T Consensus        91 -------------S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~---~~~~D~vv~~  132 (247)
T PRK15451         91 -------------SPAMIERCRRHIDAYKAPTPVDVIEGDIRDIA---IENASMVVLN  132 (247)
T ss_pred             -------------CHHHHHHHHHHHHhcCCCCCeEEEeCChhhCC---CCCCCEEehh
Confidence                         33334555666665443335555555544321   3468888765

>PRK07677 short chain dehydrogenase; Provisional

Probab=88.52  E-value=1.2  Score=39.38  Aligned_cols=32  Identities=13%  Similarity=0.285  Sum_probs=27.1

Q ss_pred             CcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCC
Q 020565           32 SHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDR   64 (324)
Q Consensus        32 ~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d   64 (324)
                      ++++|.|+ |++|..+++.|+..|. ++.++|.+
T Consensus         2 k~~lItG~s~giG~~ia~~l~~~G~-~Vi~~~r~   34 (252)
T PRK07677          2 KVVIITGGSSGMGKAMAKRFAEEGA-NVVITGRT   34 (252)
T ss_pred             CEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCC
Confidence            57899997 6799999999999998 58887653

>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase

Probab=88.49  E-value=2.2  Score=40.93  Aligned_cols=98  Identities=18%  Similarity=0.186  Sum_probs=56.8

Q ss_pred             hcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeE
Q 020565           30 SKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV  108 (324)
Q Consensus        30 ~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~  108 (324)
                      +..+|.|+|+ |.+|.++++.|..-...+++.+-.+               ...   |+.        +...+|.+....
T Consensus        37 ~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~---------------~sa---G~~--------i~~~~~~l~~~~   90 (381)
T PLN02968         37 EKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTAD---------------RKA---GQS--------FGSVFPHLITQD   90 (381)
T ss_pred             cccEEEEECCCChHHHHHHHHHHhCCCCeEEEEECh---------------hhc---CCC--------chhhCccccCcc
Confidence            4558999998 6799999999998866667776431               111   321        122223221100


Q ss_pred             eeCCCCCCchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEeee
Q 020565          109 EKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDC  158 (324)
Q Consensus       109 ~~~~~~~~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~~~  158 (324)
                       .....+.....+++.|+||.|..+......+..+  +  .+.++|+.++
T Consensus        91 -~~~~~~~~~~~~~~~DvVf~Alp~~~s~~i~~~~--~--~g~~VIDlSs  135 (381)
T PLN02968         91 -LPNLVAVKDADFSDVDAVFCCLPHGTTQEIIKAL--P--KDLKIVDLSA  135 (381)
T ss_pred             -ccceecCCHHHhcCCCEEEEcCCHHHHHHHHHHH--h--CCCEEEEcCc
Confidence             0011122223357899999999886666666553  3  4566666553

>TIGR01746 Thioester-redct thioester reductase domain

Probab=88.45  E-value=3.9  Score=37.90  Aligned_cols=31  Identities=10%  Similarity=0.083  Sum_probs=24.5

Q ss_pred             cEEEEcC-chhHHHHHHHHHHhCC-CcEEEEcC
Q 020565           33 HILVCGM-KGTVAEFCKNIVLAGV-GSLTLMDD   63 (324)
Q Consensus        33 ~VliiG~-g~lGsei~k~L~~~Gv-~~i~lvD~   63 (324)
                      +|+|.|+ |.+|+.+++.|...|. .+++.+..
T Consensus         1 ~vlvtGatG~lG~~l~~~L~~~g~~~~V~~l~R   33 (367)
T TIGR01746         1 TVLLTGATGFLGAYLLEELLRRSTQAKVICLVR   33 (367)
T ss_pred             CEEEeccchHHHHHHHHHHHhCCCCCEEEEEEc
Confidence            5899996 8899999999999984 34665543

It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold.

>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional

Probab=88.43  E-value=2.3  Score=37.90  Aligned_cols=34  Identities=12%  Similarity=0.333  Sum_probs=28.5

Q ss_pred             HHHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEE
Q 020565           27 RRLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLM   61 (324)
Q Consensus        27 ~~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lv   61 (324)
                      ..|++++++|.|+ +|+|.++++.|+..|.. ++++
T Consensus         4 ~~l~~k~vlItGas~gIG~~ia~~l~~~G~~-v~~~   38 (260)
T PRK08416          4 NEMKGKTLVISGGTRGIGKAIVYEFAQSGVN-IAFT   38 (260)
T ss_pred             cccCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEE
Confidence            3477889999996 78999999999999986 6554

>PRK08264 short chain dehydrogenase; Validated

Probab=88.43  E-value=0.64  Score=40.71  Aligned_cols=37  Identities=16%  Similarity=0.316  Sum_probs=31.8

Q ss_pred             HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCCc
Q 020565           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRV   65 (324)
Q Consensus        29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d~   65 (324)
                      +++++|+|.|+ |++|.++++.|+..|..++.+++.+.
T Consensus         4 ~~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~   41 (238)
T PRK08264          4 IKGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDP   41 (238)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecCh
Confidence            56789999995 88999999999999996788887643

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=88.41  E-value=2  Score=42.18  Aligned_cols=114  Identities=15%  Similarity=0.084  Sum_probs=67.4

Q ss_pred             HHHhHHHHHhhhHHHHHH----------HhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCC
Q 020565           11 TALYDRQIRVWGADAQRR----------LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPD   80 (324)
Q Consensus        11 ~~ry~Rqi~l~g~~~q~~----------l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~   80 (324)
                      ...|+.-.+..|..+.+.          ....+|.|||.|+-|-..+.-|+++|+. +|+.+..    .-...=..|.--
T Consensus        93 ~v~i~~le~~i~d~~~~~g~i~~~~~~~~tg~~VaviGaGPAGl~~a~~L~~~G~~-Vtv~e~~----~~~GGll~yGIP  167 (457)
T COG0493          93 PVNIGALERAIGDKADREGWIPGELPGSRTGKKVAVIGAGPAGLAAADDLSRAGHD-VTVFERV----ALDGGLLLYGIP  167 (457)
T ss_pred             chhhhhHHHHHhhHHHHhCCCCCCCCCCCCCCEEEEECCCchHhhhHHHHHhCCCe-EEEeCCc----CCCceeEEecCc
Confidence            345555556655555433          3457899999999999999999999997 8887661    112211222211


Q ss_pred             CcccCCccHHHHHHHHHHhhCCCCeEeEeeCCC-CCCchhhcCCccEEEEcCC
Q 020565           81 ENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDL-SSLDGEFYDKFDVVVVSCC  132 (324)
Q Consensus        81 di~~~G~~ka~~~~~~l~~lnp~v~v~~~~~~~-~~~~~~~~~~~diVi~~~~  132 (324)
                      +. ...+.-++-..+.|.+++  +++.....-= +-..+++.+.||.|+.++.
T Consensus       168 ~~-kl~k~i~d~~i~~l~~~G--v~~~~~~~vG~~it~~~L~~e~Dav~l~~G  217 (457)
T COG0493         168 DF-KLPKDILDRRLELLERSG--VEFKLNVRVGRDITLEELLKEYDAVFLATG  217 (457)
T ss_pred             hh-hccchHHHHHHHHHHHcC--eEEEEcceECCcCCHHHHHHhhCEEEEecc
Confidence            11 013334445555666666  5554322211 1234666788999998875

>TIGR03466 HpnA hopanoid-associated sugar epimerase

Probab=88.29  E-value=3  Score=38.18  Aligned_cols=31  Identities=13%  Similarity=0.178  Sum_probs=26.5

Q ss_pred             cEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCC
Q 020565           33 HILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDR   64 (324)
Q Consensus        33 ~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d   64 (324)
                      +|+|.|. |.+|+.+++.|+..|. +++.+|..
T Consensus         2 ~vlItG~~G~iG~~l~~~L~~~g~-~V~~~~r~   33 (328)
T TIGR03466         2 KVLVTGATGFVGSAVVRLLLEQGE-EVRVLVRP   33 (328)
T ss_pred             eEEEECCccchhHHHHHHHHHCCC-EEEEEEec
Confidence            6899995 8899999999999996 57777763

The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.

>PRK07236 hypothetical protein; Provisional

Probab=88.28  E-value=0.59  Score=44.56  Aligned_cols=36  Identities=14%  Similarity=0.015  Sum_probs=32.0

Q ss_pred             HhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCc
Q 020565           29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV   65 (324)
Q Consensus        29 l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~   65 (324)
                      ++..+|+|||.|..|..+|..|++.|+. ++|+|...
T Consensus         4 ~~~~~ViIVGaG~aGl~~A~~L~~~G~~-v~v~E~~~   39 (386)
T PRK07236          4 MSGPRAVVIGGSLGGLFAALLLRRAGWD-VDVFERSP   39 (386)
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhCCCC-EEEEecCC
Confidence            4567899999999999999999999996 89998754

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	324
1y8q_A	346	Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex		8e-42
4ii2_A	1001	Crystal Structure Of Ubiquitin Activating Enzyme 1		2e-12
4ii2_A	1001	Crystal Structure Of Ubiquitin Activating Enzyme 1		2e-04
1yov_A	537	Insights Into The Ubiquitin Transfer Cascade From T		1e-10
1tt5_A	531	Structure Of Appbp1-Uba3-Ubc12n26: A Unique E1-E2 I		1e-10
3gzn_A	534	Structure Of Nedd8-Activating Enzyme In Complex Wit		1e-10
1r4m_A	529	Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Com		1e-10
2nvu_A	536	Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C1		1e-10
3cmm_A	1015	Crystal Structure Of The Uba1-Ubiquitin Complex Len		5e-10
3cmm_A	1015	Crystal Structure Of The Uba1-Ubiquitin Complex Len		2e-05
1jwb_B	249	Structure Of The Covalent Acyl-Adenylate Form Of Th		5e-05

>pdb|1Y8Q|A Chain A, Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex Length = 346

Iteration: 1
 Score =  167 bits (423), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 109/342 (31%), Positives = 174/342 (50%), Gaps = 38/342 (11%)
Query: 3   GEELTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMD 62
           G  ++E+E A YDRQIR+WG +AQ+RL  S +L+ G+KG  AE  KN++LAGV  LT++D
Sbjct: 8   GGGISEEEAAQYDRQIRLWGLEAQKRLRASRVLLVGLKGLGAEIAKNLILAGVKGLTMLD 67
Query: 63  DRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEFYD 122
              VT E   A FLI        G+  AE   +  ++ NPMV V V+  D+      F+ 
Sbjct: 68  HEQVTPEDPGAQFLI---RTGSVGRNRAEASLERAQNLNPMVDVKVDTEDIEKKPESFFT 124
Query: 123 KFDXXXXXXXXXXXXXLINEKCRKLSKRVAFYTVDCRDSCGEIFVDLQNHKYSKQKIE-- 180
           +FD              +++ C K S  + F+T D     G  F +L  H++ ++K +  
Sbjct: 125 QFDAVCLTCCSRDVIVKVDQICHKNS--IKFFTGDVFGYHGYTFANLGEHEFVEEKTKVA 182
Query: 181 --------------------ET--IECQLRYPSFEEAISVPW-----RALPRKASKLYFA 213
                               ET  ++ ++ +   +EA+ V W     +A  ++ +  YF 
Sbjct: 183 KVSQGVEDGPDTKRAKLDSSETTMVKKKVVFCPVKEALEVDWSSEKAKAALKRTTSDYFL 242
Query: 214 LRVLEQFEEAEGRSPGEISI-ADLPAVLKLKKELCEANALNASHVTDSLLERLIIGTREF 272
           L+VL +F   +GR P   +   D   +L+++ ++ ++  ++   + +  +        E 
Sbjct: 243 LQVLLKFRTDKGRDPSSDTYEEDSELLLQIRNDVLDSLGISPDLLPEDFVRYCF---SEM 299
Query: 273 TPVCAVVGGILGQEVIKAISCKGEPLKNFFFFDIMDGKGVVE 314
            PVCAVVGGIL QE++KA+S +  P  NFFFFD M G G+VE
Sbjct: 300 APVCAVVGGILAQEIVKALSQRDPPHNNFFFFDGMKGNGIVE 341

>pdb|4II2|A Chain A, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1) In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg Length = 1001

Iteration: 1
 Score = 69.7 bits (169), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/158 (31%), Positives = 72/158 (45%), Gaps = 9/158 (5%)
Query: 12  ALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAW 71
            LY RQ+ V G +A +++S+S++L+ G KG   E  KN+ LAGV S+TL D +    E  
Sbjct: 7   GLYSRQLYVLGHEAMKQMSQSNVLIIGCKGLGVEIAKNVCLAGVKSVTLYDPQPTRIEDL 66
Query: 72  SANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEFYDKFDXXXXXX 131
           S+ + +  D+    G   A+V    L + N  V VSV    +  L  E+   F       
Sbjct: 67  SSQYFLTEDDI---GVPRAKVTVSKLAELNQYVPVSV----VDELSTEYLKNFKCVVVTE 119
Query: 132 XXXXXXXLINEKCRKLSKRVAFYTVDCRDSCGEIFVDL 169
                   IN+   K    +A+   D R   G IF D 
Sbjct: 120 TSLTKQLEINDFTHK--NHIAYIAADSRGLFGSIFCDF 155

>pdb|4II2|A Chain A, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1) In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg Length = 1001

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/148 (22%), Positives = 67/148 (45%), Gaps = 8/148 (5%)
Query: 168 DLQNHKYSKQKIEETIECQLRYPSFEEAISVPWRALP-----RKASKLYFALRVLEQFEE 222
           DL +  Y+    +  +  ++ + S  E++  P    P      +  + + A + L  F +
Sbjct: 233 DLGSAGYNGVFTQVKVPTKISFKSLRESLKDPEYVYPDFGKMMRPPQYHIAFQALSAFAD 292
Query: 223 A-EGRSPGEISIADLPAVLKLKKELCEANALNASHVTDSLLERLIIGTR-EFTPVCAVVG 280
           A EG  P   +  D     +  K++      +   + + L++ +    R +   + A +G
Sbjct: 293 AHEGSLPRPRNDIDAAEFFEFCKKIASTLQFDV-ELDEKLIKEISYQARGDLVAMSAFLG 351
Query: 281 GILGQEVIKAISCKGEPLKNFFFFDIMD 308
           G + QEV+KA + K  PLK +F+FD ++
Sbjct: 352 GAVAQEVLKATTSKFYPLKQYFYFDSLE 379

>pdb|1YOV|A Chain A, Insights Into The Ubiquitin Transfer Cascade From The Refined Structure Of The Activating Enzyme For Nedd8 Length = 537

Iteration: 1
 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/125 (34%), Positives = 65/125 (52%), Gaps = 9/125 (7%)
Query: 3   GEELTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMD 62
           G+ L EQ+   YDRQ+R+WG   Q  L  +H+ +     T  E  KN+VL G+GS T++D
Sbjct: 8   GKLLKEQK---YDRQLRLWGDHGQEALESAHVCLINATATGTEILKNLVLPGIGSFTIID 64
Query: 63  DRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS-VEKGDLSSLDGE-- 119
              V+ E    NF +   +    GK  AE   + L++ N  V  S VE+   + LD +  
Sbjct: 65  GNQVSGEDAGNNFFL---QRSSIGKNRAEAAMEFLQELNSDVSGSFVEESPENLLDNDPS 121
Query: 120 FYDKF 124
           F+ +F
Sbjct: 122 FFCRF 126

>pdb|1TT5|A Chain A, Structure Of Appbp1-Uba3-Ubc12n26: A Unique E1-E2 Interaction Required For Optimal Conjugation Of The Ubiquitin-Like Protein Nedd8 Length = 531

Iteration: 1
 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/125 (34%), Positives = 65/125 (52%), Gaps = 9/125 (7%)
Query: 3   GEELTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMD 62
           G+ L EQ+   YDRQ+R+WG   Q  L  +H+ +     T  E  KN+VL G+GS T++D
Sbjct: 7   GKLLKEQK---YDRQLRLWGDHGQEALESAHVCLINATATGTEILKNLVLPGIGSFTIID 63
Query: 63  DRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS-VEKGDLSSLDGE-- 119
              V+ E    NF +   +    GK  AE   + L++ N  V  S VE+   + LD +  
Sbjct: 64  GNQVSGEDAGNNFFL---QRSSIGKNRAEAAMEFLQELNSDVSGSFVEESPENLLDNDPS 120
Query: 120 FYDKF 124
           F+ +F
Sbjct: 121 FFCRF 125

>pdb|3GZN|A Chain A, Structure Of Nedd8-Activating Enzyme In Complex With Nedd8 And Mln4924 Length = 534

Iteration: 1
 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/125 (34%), Positives = 65/125 (52%), Gaps = 9/125 (7%)
Query: 3   GEELTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMD 62
           G+ L EQ+   YDRQ+R+WG   Q  L  +H+ +     T  E  KN+VL G+GS T++D
Sbjct: 5   GKLLKEQK---YDRQLRLWGDHGQEALESAHVCLINATATGTEILKNLVLPGIGSFTIID 61
Query: 63  DRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS-VEKGDLSSLDGE-- 119
              V+ E    NF +   +    GK  AE   + L++ N  V  S VE+   + LD +  
Sbjct: 62  GNQVSGEDAGNNFFL---QRSSIGKNRAEAAMEFLQELNSDVSGSFVEESPENLLDNDPS 118
Query: 120 FYDKF 124
           F+ +F
Sbjct: 119 FFCRF 123

>pdb|1R4M|A Chain A, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex Length = 529

Iteration: 1
 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/125 (34%), Positives = 65/125 (52%), Gaps = 9/125 (7%)
Query: 3   GEELTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMD 62
           G+ L EQ+   YDRQ+R+WG   Q  L  +H+ +     T  E  KN+VL G+GS T++D
Sbjct: 5   GKLLKEQK---YDRQLRLWGDHGQEALESAHVCLINATATGTEILKNLVLPGIGSFTIID 61
Query: 63  DRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS-VEKGDLSSLDGE-- 119
              V+ E    NF +   +    GK  AE   + L++ N  V  S VE+   + LD +  
Sbjct: 62  GNQVSGEDAGNNFFL---QRSSIGKNRAEAAMEFLQELNSDVSGSFVEESPENLLDNDPS 118
Query: 120 FYDKF 124
           F+ +F
Sbjct: 119 FFCRF 123

>pdb|2NVU|A Chain A, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A Trapped Ubiquitin-Like Protein Activation Complex Length = 536

Iteration: 1
 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/125 (34%), Positives = 65/125 (52%), Gaps = 9/125 (7%)
Query: 3   GEELTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMD 62
           G+ L EQ+   YDRQ+R+WG   Q  L  +H+ +     T  E  KN+VL G+GS T++D
Sbjct: 7   GKLLKEQK---YDRQLRLWGDHGQEALESAHVCLINATATGTEILKNLVLPGIGSFTIID 63
Query: 63  DRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS-VEKGDLSSLDGE-- 119
              V+ E    NF +   +    GK  AE   + L++ N  V  S VE+   + LD +  
Sbjct: 64  GNQVSGEDAGNNFFL---QRSSIGKNRAEAAMEFLQELNSDVSGSFVEESPENLLDNDPS 120
Query: 120 FYDKF 124
           F+ +F
Sbjct: 121 FFCRF 125

>pdb|3CMM|A Chain A, Crystal Structure Of The Uba1-Ubiquitin Complex Length = 1015

Iteration: 1
 Score = 61.6 bits (148), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 51/164 (31%), Positives = 78/164 (47%), Gaps = 11/164 (6%)
Query: 8   EQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVT 67
           E + +LY RQ+ V G +A  ++  S++L+ G+KG   E  KN+VLAGV S+T+ D   V 
Sbjct: 4   EIDESLYSRQLYVLGKEAMLKMQTSNVLILGLKGLGVEIAKNVVLAGVKSMTVFDPEPVQ 63
Query: 68  EEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDG-EFYDKFDX 126
               S  F +  ++++  G+   +V    L + N  V V+V    L SLD      +F  
Sbjct: 64  LADLSTQFFL-TEKDI--GQKRGDVTRAKLAELNAYVPVNV----LDSLDDVTQLSQFQV 116
Query: 127 XXXXXXXXXXXXL-INEKCRKLSKRVAFYTVDCRDSCGEIFVDL 169
                       + INE C   S  + F + + R   G  FVDL
Sbjct: 117 VVATDTVSLEDKVKINEFCH--SSGIRFISSETRGLFGNTFVDL 158

>pdb|3CMM|A Chain A, Crystal Structure Of The Uba1-Ubiquitin Complex Length = 1015

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 54/108 (50%), Gaps = 5/108 (4%)
Query: 206 KASKLYFALRVLEQFE-EAEGRSPGEISIADLPAVLKLKKELC--EANALN-ASHVTDSL 261
           +A++L+   + L QF     G  P  ++  D   ++KL  +L   +   L     V + L
Sbjct: 279 RAAQLHLGFQALHQFAVRHNGELPRTMNDEDANELIKLVTDLSVQQPEVLGEGVDVNEDL 338
Query: 262 LERLIIGTREFTP-VCAVVGGILGQEVIKAISCKGEPLKNFFFFDIMD 308
           ++ L    R   P V A  GG++ QEV+KA S K  PLK F +FD ++
Sbjct: 339 IKELSYQARGDIPGVVAFFGGLVAQEVLKACSGKFTPLKQFMYFDSLE 386

>pdb|1JWB|B Chain B, Structure Of The Covalent Acyl-Adenylate Form Of The Moeb-Moad Protein Complex Length = 249

Iteration: 1
 Score = 45.1 bits (105), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 51/105 (48%), Gaps = 5/105 (4%)
Query: 5   ELTEQETALYDRQI--RVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMD 62
           EL++QE   Y+RQI  R +  D Q  L  S +L+ G+ G      + +  AGVG+LTL+D
Sbjct: 3   ELSDQEMLRYNRQIILRGFDFDGQEALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLD 62
Query: 63  DRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS 107
              V+        L   D  V  G+   E   D+L   NP + ++
Sbjct: 63  FDTVSLSNLQRQTL-HSDATV--GQPKVESARDALTRINPHIAIT 104

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	324
1y8q_A	346	Ubiquitin-like 1 activating enzyme E1A; SUMO, hete	1e-102
1tt5_A	531	APPBP1, amyloid protein-binding protein 1; cell cy	1e-56
1tt5_A	531	APPBP1, amyloid protein-binding protein 1; cell cy	4e-24
3cmm_A	1015	Ubiquitin-activating enzyme E1 1; UBA1, protein tu	7e-42
3cmm_A	1015	Ubiquitin-activating enzyme E1 1; UBA1, protein tu	1e-22
3cmm_A	1015	Ubiquitin-activating enzyme E1 1; UBA1, protein tu	5e-12
1tt5_B	434	Ubiquitin-activating enzyme E1C isoform 1; cell cy	9e-16
1y8q_B	640	Anthracycline-, ubiquitin-like 2 activating enzyme	2e-11
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	4e-11
2nvu_B	805	Maltose binding protein/NEDD8-activating enzyme E1	3e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	7e-09
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	2e-08
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	2e-07
3vh1_A	598	Ubiquitin-like modifier-activating enzyme ATG7; au	1e-05
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	1e-04

>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A* Length = 346

 Score =  303 bits (777), Expect = e-102
 Identities = 109/343 (31%), Positives = 174/343 (50%), Gaps = 38/343 (11%)

Query: 3   GEELTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMD 62
           G  ++E+E A YDRQIR+WG +AQ+RL  S +L+ G+KG  AE  KN++LAGV  LT++D
Sbjct: 8   GGGISEEEAAQYDRQIRLWGLEAQKRLRASRVLLVGLKGLGAEIAKNLILAGVKGLTMLD 67

Query: 63  DRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEFYD 122
              VT E   A FLI    +V  G+  AE   +  ++ NPMV V V+  D+      F+ 
Sbjct: 68  HEQVTPEDPGAQFLI-RTGSV--GRNRAEASLERAQNLNPMVDVKVDTEDIEKKPESFFT 124

Query: 123 KFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFVDLQNHKYS------- 175
           +FD V ++CCS      +++ C K    + F+T D     G  F +L  H++        
Sbjct: 125 QFDAVCLTCCSRDVIVKVDQICHKN--SIKFFTGDVFGYHGYTFANLGEHEFVEEKTKVA 182

Query: 176 -----------------KQKIEETIECQLRYPSFEEAISVPWRAL-----PRKASKLYFA 213
                                   ++ ++ +   +EA+ V W +       ++ +  YF 
Sbjct: 183 KVSQGVEDGPDTKRAKLDSSETTMVKKKVVFCPVKEALEVDWSSEKAKAALKRTTSDYFL 242

Query: 214 LRVLEQFEEAEGRSPGEISI-ADLPAVLKLKKELCEANALNASHVTDSLLERLIIGTREF 272
           L+VL +F   +GR P   +   D   +L+++ ++ ++  ++   + +  +        E 
Sbjct: 243 LQVLLKFRTDKGRDPSSDTYEEDSELLLQIRNDVLDSLGISPDLLPEDFVRYC---FSEM 299

Query: 273 TPVCAVVGGILGQEVIKAISCKGEPLKNFFFFDIMDGKGVVED 315
            PVCAVVGGIL QE++KA+S +  P  NFFFFD M G G+VE 
Sbjct: 300 APVCAVVGGILAQEIVKALSQRDPPHNNFFFFDGMKGNGIVEC 342

>1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A 3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A* Length = 531

 Score =  190 bits (484), Expect = 1e-56
 Identities = 56/247 (22%), Positives = 94/247 (38%), Gaps = 20/247 (8%)

Query: 1   MDGEELTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTL 60
             G+ L EQ    YDRQ+R+WG   Q  L  +H+ +     T  E  KN+VL G+GS T+
Sbjct: 5   QLGKLLKEQ---KYDRQLRLWGDHGQEALESAHVCLINATATGTEILKNLVLPGIGSFTI 61

Query: 61  MDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSL---D 117
           +D   V+ E    NF +        GK  AE   + L++ N  V  S  +    +L   D
Sbjct: 62  IDGNQVSGEDAGNNFFLQRSSI---GKNRAEAAMEFLQELNSDVSGSFVEESPENLLDND 118

Query: 118 GEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFVDLQNHKYSKQ 177
             F+ +F VVV +    +T   + +       ++           G + + ++ H   + 
Sbjct: 119 PSFFCRFTVVVATQLPESTSLRLADVLWN--SQIPLLICRTYGLVGYMRIIIKEHPVIES 176

Query: 178 KIEETIECQLR---YPSFEEAISVPW-----RALPRKASKLYFALRVLEQF-EEAEGRSP 228
             +  +E       +P   E           +        +    + L Q+  E  GR P
Sbjct: 177 HPDNALEDLRLDKPFPELREHFQSYDLDHMEKKDHSHTPWIVIIAKYLAQWYSETNGRIP 236

Query: 229 GEISIAD 235
                 +
Sbjct: 237 KTYKEKE 243

>1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A 3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A* Length = 531

 Score =  101 bits (253), Expect = 4e-24
 Identities = 32/179 (17%), Positives = 62/179 (34%), Gaps = 5/179 (2%)

Query: 138 KLINEKCRKLSKRVAFYTVDCRDSCGEIFVDLQNHKYSKQKIEETIECQLRYPSFEEAIS 197
             +     KL + +        +   ++     N  + +     ++  +    +  +   
Sbjct: 352 AAVGNHVAKLLQSIGQAPESISEKELKLLCS--NSAFLRVVRCRSLAEEYGLDTINKDEI 409

Query: 198 VPWRALPRKASKLYFALRVLEQFEEAEGRSPGEISIADLPAVLKLKK---ELCEANALNA 254
           +     P     LY  LR +++F + +GR PG  +      + KLK       +   L+ 
Sbjct: 410 ISSMDNPDNEIVLYLMLRAVDRFHKQQGRYPGVSNYQVEEDIGKLKSCLTGFLQEYGLSV 469

Query: 255 SHVTDSLLERLIIGTREFTPVCAVVGGILGQEVIKAISCKGEPLKNFFFFDIMDGKGVV 313
               D + E    G  E   + A +GG   QEVIK I+ +     N + +  M      
Sbjct: 470 MVKDDYVHEFCRYGAAEPHTIAAFLGGAAAQEVIKIITKQFVIFNNTYIYSGMSQTSAT 528

>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae} Length = 1015

 Score =  154 bits (389), Expect = 7e-42
 Identities = 52/167 (31%), Positives = 81/167 (48%), Gaps = 9/167 (5%)

Query: 7   TEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVV 66
            E + +LY RQ+ V G +A  ++  S++L+ G+KG   E  KN+VLAGV S+T+ D   V
Sbjct: 3   GEIDESLYSRQLYVLGKEAMLKMQTSNVLILGLKGLGVEIAKNVVLAGVKSMTVFDPEPV 62

Query: 67  TEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEFYDKFDV 126
                S  F +  ++++  G+   +V    L + N  V V+V        D     +F V
Sbjct: 63  QLADLSTQFFL-TEKDI--GQKRGDVTRAKLAELNAYVPVNVLDSL---DDVTQLSQFQV 116

Query: 127 VVVSCC-SVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFVDLQNH 172
           VV +   S+  K  INE C      + F + + R   G  FVDL + 
Sbjct: 117 VVATDTVSLEDKVKINEFCHSSG--IRFISSETRGLFGNTFVDLGDE 161

>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae} Length = 1015

 Score = 97.6 bits (242), Expect = 1e-22
 Identities = 39/198 (19%), Positives = 76/198 (38%), Gaps = 24/198 (12%)

Query: 5   ELTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGV-----GSLT 59
           + T+   + YD QI V+G D Q++++ S + + G      E  KN  L G+     G + 
Sbjct: 399 KTTQPVNSRYDNQIAVFGLDFQKKIANSKVFLVGSGAIGCEMLKNWALLGLGSGSDGYIV 458

Query: 60  LMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS-------VEKGD 112
           + D+  + +   +  FL  P ++V  GK  +EV  +++   NP ++         V    
Sbjct: 459 VTDNDSIEKSNLNRQFLFRP-KDV--GKNKSEVAAEAVCAMNPDLKGKINAKIDKVGPET 515

Query: 113 LSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFVDLQNH 172
               +  F++  D V  +  +V  +  ++ +C    K           + G   V +   
Sbjct: 516 EEIFNDSFWESLDFVTNALDNVDARTYVDRRCVFYRKP--LLESGTLGTKGNTQVIIPRL 573

Query: 173 KYSKQKIEETIECQLRYP 190
                   E+       P
Sbjct: 574 T-------ESYSSSRDPP 584

>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae} Length = 1015

 Score = 66.0 bits (160), Expect = 5e-12
 Identities = 49/235 (20%), Positives = 90/235 (38%), Gaps = 19/235 (8%)

Query: 93  CCDSLKDFNPMVRVSVEKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVA 152
                +    MV      G ++ LD   +   D   V    V     +N+      + + 
Sbjct: 166 DPTGEEPRTGMVSDIEPDGTVTMLDDNRHGLEDGNFVRFSEVEGLDKLNDGTLFKVEVLG 225

Query: 153 FYTVDCRDSCGEIFVDLQNHKYSKQKIEETIEC--QLRYPSFEEAISVPW-----RALPR 205
            +          I    +  +Y K  I   ++   ++ + S ++ +S P       A   
Sbjct: 226 PFAF-------RIGSVKEYGEYKKGGIFTEVKVPRKISFKSLKQQLSNPEFVFSDFAKFD 278

Query: 206 KASKLYFALRVLEQF-EEAEGRSPGEISIADLPAVLKLKKELCEANA---LNASHVTDSL 261
           +A++L+   + L QF     G  P  ++  D   ++KL  +L             V + L
Sbjct: 279 RAAQLHLGFQALHQFAVRHNGELPRTMNDEDANELIKLVTDLSVQQPEVLGEGVDVNEDL 338

Query: 262 LERLIIGTR-EFTPVCAVVGGILGQEVIKAISCKGEPLKNFFFFDIMDGKGVVED 315
           ++ L    R +   V A  GG++ QEV+KA S K  PLK F +FD ++     ++
Sbjct: 339 IKELSYQARGDIPGVVAFFGGLVAQEVLKACSGKFTPLKQFMYFDSLESLPDPKN 393

>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B* Length = 434

 Score = 76.5 bits (188), Expect = 9e-16
 Identities = 60/326 (18%), Positives = 112/326 (34%), Gaps = 37/326 (11%)

Query: 4   EELTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD 63
           ++  E+                Q  L    +LV G  G   E  KN+ L+G   + ++D 
Sbjct: 13  KKFLERSGPFTHPDFEPSTESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDM 72

Query: 64  RVVTEEAWSAN----FLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGE 119
             +      +N    FL  P +++  G+  AEV  + L D  P   V      +   +  
Sbjct: 73  DTIDV----SNLNRQFLFRP-KDI--GRPKAEVAAEFLNDRVPNCNVVPHFNKIQDFNDT 125

Query: 120 FYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFVDLQNHKYSKQ-- 177
           FY +F ++V    S+  ++ IN     L     +       S     +D     +     
Sbjct: 126 FYRQFHIIVCGLDSIIARRWINGMLISLLN---YEDGVLDPSSIVPLIDGGTEGFKGNAR 182

Query: 178 ----KIEETIECQLRYPSFEEAISVP---WRALPRKASK-LYFALRVLEQFEEAEGRSPG 229
                +   IEC      +   ++ P     ++PR     + +   +    E  +    G
Sbjct: 183 VILPGMTACIECT--LELYPPQVNFPMCTIASMPRLPEHCIEYVRMLQWPKE--QPFGEG 238

Query: 230 EISIADLPAVLKLKKELCEANALNAS------HVTDSLLERLIIGTREFTPVCAVVGGIL 283
                D P  ++   +     A   +       +T  +++R+I          AV+  + 
Sbjct: 239 VPLDGDDPEHIQWIFQKSLERASQYNIRGVTYRLTQGVVKRIIPAVASTN---AVIAAVC 295

Query: 284 GQEVIKAISCKGEPLKNFFFFDIMDG 309
             EV K  +    PL N+  F+ +DG
Sbjct: 296 ATEVFKIATSAYIPLNNYLVFNDVDG 321

>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A Length = 640

 Score = 63.6 bits (154), Expect = 2e-11
 Identities = 28/134 (20%), Positives = 55/134 (41%), Gaps = 5/134 (3%)

Query: 18  IRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLI 77
            R    +    ++   +LV G  G   E  KN+VL G   + L+D   +     +  FL 
Sbjct: 4   SRGLPRELAEAVAGGRVLVVGAGGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLNRQFLF 63

Query: 78  PPDENVYGGKTIAEVCCDSLKDFNPMVRVS--VEKGDLSSLDGEFYDKFDVVVVSCCSVT 135
              ++V  G++ A+V  +S+  F P   +    +       + EF+ +F +V+ +  +  
Sbjct: 64  QK-KHV--GRSKAQVAKESVLQFYPKANIVAYHDSIMNPDYNVEFFRQFILVMNALDNRA 120

Query: 136 TKKLINEKCRKLSK 149
            +  +N  C     
Sbjct: 121 ARNHVNRMCLAADV 134

>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A Length = 353

 Score = 62.0 bits (151), Expect = 4e-11
 Identities = 30/164 (18%), Positives = 60/164 (36%), Gaps = 25/164 (15%)

Query: 1   MDGEELTEQETALYDRQI------RVWGADAQRRLSKSHILVCGMKG---TVAEFCKNIV 51
           + GE     E   Y R               Q +L  + +++ G  G    V+     + 
Sbjct: 82  IPGEYNNSTENNRYSRNFLHYQSYGANPVLVQDKLKNAKVVILGCGGIGNHVSVI---LA 138

Query: 52  LAGVGSLTLMDDRVVTEEAWSANF---LIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV 108
            +G+G + L+D+  +       N    ++  +++V  GK   EV    L   N  + VS 
Sbjct: 139 TSGIGEIILIDNDQIEN----TNLTRQVLFSEDDV--GKNKTEVIKRELLKRNSEISVSE 192

Query: 109 EKGDLSS-LDGEFYDKFDVVVVSCC--SVTTKKLINEKCRKLSK 149
              +++   D     + D+ VV            +N+ C + ++
Sbjct: 193 IALNINDYTDLHKVPEADIWVV-SADHPFNLINWVNKYCVRANQ 235

>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1 Length = 805

 Score = 57.2 bits (138), Expect = 3e-09
 Identities = 60/319 (18%), Positives = 109/319 (34%), Gaps = 41/319 (12%)

Query: 13  LYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWS 72
                        Q  L    +LV G  G   E  KN+ L+G   + ++D   +     +
Sbjct: 393 FTHPDFEPSTESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLN 452

Query: 73  ANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEFYDKFDVVVVSCC 132
             FL  P +++  G+  AEV  + L D  P   V      +   +  FY +F ++V  C 
Sbjct: 453 RQFLFRP-KDI--GRPKAEVAAEFLNDRVPNCNVVPHFNKIQDFNDTFYRQFHIIV--CG 507

Query: 133 --SVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFVD------LQNHKYSKQKIEETIE 184
             S+  ++ IN     L     +       S     +D        N +     +   IE
Sbjct: 508 LDSIIARRWINGMLISLLN---YEDGVLDPSSIVPLIDGGTEGFKGNARVILPGMTACIE 564

Query: 185 CQLRYPSFEEAISVPW---RALPRK-------ASKLYFALRVLEQFEEAEGRSPGEISIA 234
           C L     +   + P     ++PR           L +     ++    EG         
Sbjct: 565 CTLELYPPQV--NFPMCTIASMPRLPEHCIEYVRMLQWP----KEQPFGEGVPLDGDDPE 618

Query: 235 DLPAVLKLKKELCEANALNAS--HVTDSLLERLI--IGTREFTPVCAVVGGILGQEVIKA 290
            +  + +   E      +      +T  +++R+I  + +       AV+  +   EV K 
Sbjct: 619 HIQWIFQKSLERASQYNIRGVTYRLTQGVVKRIIPAVASTN-----AVIAAVCATEVFKI 673

Query: 291 ISCKGEPLKNFFFFDIMDG 309
            +    PL N+  F+ +DG
Sbjct: 674 ATSAYIPLNNYLVFNDVDG 692

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.0 bits (134), Expect = 7e-09
 Identities = 45/361 (12%), Positives = 100/361 (27%), Gaps = 143/361 (39%)

Query: 4   EELTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGT-----VAEFCKNIVLAGVGSL 58
           +   +   AL   ++R             ++L+ G+ G+       + C +  +      
Sbjct: 135 QPYLKLRQALL--ELR----------PAKNVLIDGVLGSGKTWVALDVCLSYKV-----Q 177

Query: 59  TLMDDRVVTEEAW-------SANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKG 111
             MD ++     W       S   ++   + +   +        S    N  +R+   + 
Sbjct: 178 CKMDFKI----FWLNLKNCNSPETVLEMLQKLL-YQIDPNWTSRSDHSSNIKLRIHSIQA 232

Query: 112 DLSSL-----------------DGEFYDKFDVVVVSCCS-VTTK---------------- 137
           +L  L                 + + ++ F+   +SC   +TT+                
Sbjct: 233 ELRRLLKSKPYENCLLVLLNVQNAKAWNAFN---LSCKILLTTRFKQVTDFLSAATTTHI 289

Query: 138 -------------------KLINEKCRKLSKRVAFYTVDCRDS------CGEIFVDLQNH 172
                              K ++ + + L + V         +        E   D    
Sbjct: 290 SLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREV------LTTNPRRLSIIAESIRDGLAT 343

Query: 173 -----KYSKQKIEETIECQL----------RYPS---FEEAISVP-------WRALPRKA 207
                  +  K+   IE  L           +     F  +  +P       W  + +  
Sbjct: 344 WDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK-- 401

Query: 208 SKLYFALRVLEQFEE----AEGRSPGEISIADLPAVLKLKKELCEANALNASHVTDSLLE 263
                 + V+ +  +     +      ISI  +   L+LK +L    AL   H   S+++
Sbjct: 402 ---SDVMVVVNKLHKYSLVEKQPKESTISIPSI--YLELKVKLENEYAL---H--RSIVD 451

Query: 264 R 264
            
Sbjct: 452 H 452

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.3 bits (101), Expect = 8e-05
 Identities = 45/298 (15%), Positives = 87/298 (29%), Gaps = 65/298 (21%)

Query: 6   LTEQET-ALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR 64
           LT  E  +L  + +     D  R +  ++     +   +AE  ++ +        +  D+
Sbjct: 298 LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSI---IAESIRDGLATWDNWKHVNCDK 354

Query: 65  VVTEEAWSANFLIPPD-ENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSL--DGEFY 121
           + T    S N L P +   ++          D L  F P   +      LS +  D    
Sbjct: 355 LTTIIESSLNVLEPAEYRKMF----------DRLSVFPPSAHIPTIL--LSLIWFDVIKS 402

Query: 122 DKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDC-RDSCGEIFVDLQNHKYSKQKIE 180
           D   VV           L+ ++     K           +   ++  +   H+     I 
Sbjct: 403 DVMVVVN-KLHK---YSLVEKQ----PKESTISIPSIYLELKVKLENEYALHR----SIV 450

Query: 181 ETIECQLRYPSFEEAISVPWR------------ALPRKA------SKLYFALRVLEQFEE 222
           +       + S  + +  P+                           ++   R LEQ   
Sbjct: 451 DHYNIPKTFDS--DDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIR 508

Query: 223 AEGRS-PGEISIADLPAVLKLKKELCEANALNASHVTDS--LLERLIIGTREFTPVCA 277
            +  +     SI +    LK  K           ++ D+    ERL+    +F P   
Sbjct: 509 HDSTAWNASGSILNTLQQLKFYKP----------YICDNDPKYERLVNAILDFLPKIE 556

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.3 bits (101), Expect = 1e-04
 Identities = 40/205 (19%), Positives = 67/205 (32%), Gaps = 53/205 (25%)

Query: 113 LSSLDGEFYDKFDVVVV--SCCSVTTKK----LINEKCRKLSKRVAFYTV-DCRDSCGEI 165
           LS  +  F D FD   V     S+ +K+    +I  K         F+T+   ++   + 
Sbjct: 22  LSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQK 81

Query: 166 FVD--LQ-NHKYSKQKI-EETIECQLRYPSFEEAISVPWRALPRKASKLYFALRVLEQFE 221
           FV+  L+ N+K+    I  E  +  +    + E     +    +  +K Y   R      
Sbjct: 82  FVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYND-NQVFAK-YNVSR------ 133

Query: 222 EAEGRSPGEISIADLPAVLKLKKELCEANALNASHVTDSLLERLIIGTREFTPVCAVVGG 281
                         L   LKL++ L E     A +V        I G          V G
Sbjct: 134 --------------LQPYLKLRQALLELR--PAKNVL-------IDG----------VLG 160

Query: 282 ILGQEVIKAISCKGEPLKNFFFFDI 306
             G+  +    C    ++    F I
Sbjct: 161 S-GKTWVALDVCLSYKVQCKMDFKI 184

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* Length = 249

 Score = 54.4 bits (132), Expect = 7e-09
 Identities = 42/158 (26%), Positives = 70/158 (44%), Gaps = 26/158 (16%)

Query: 5   ELTEQETALYDRQI--RVWGADAQRRLSKSHILVCGMKG---TVAEFCKNIVLAGVGSLT 59
           EL++QE   Y+RQI  R +  D Q  L  S +L+ G+ G     +++   +  AGVG+LT
Sbjct: 3   ELSDQEMLRYNRQIILRGFDFDGQEALKDSRVLIVGLGGLGCAASQY---LASAGVGNLT 59

Query: 60  LMDDRVVTEEAWSANF---LIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV--EKGDLS 114
           L+D   V+     +N     +  D  V  G+   E   D+L   NP + ++      D +
Sbjct: 60  LLDFDTVSL----SNLQRQTLHSDATV--GQPKVESARDALTRINPHIAITPVNALLDDA 113

Query: 115 SLDGEF--YDKFDVVVVSCC-SVTTKKLINEKCRKLSK 149
            L      +D    +V+ C  +V  +  +N  C     
Sbjct: 114 ELAALIAEHD----LVLDCTDNVAVRNQLNAGCFAAKV 147

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A Length = 251

 Score = 53.7 bits (130), Expect = 2e-08
 Identities = 36/154 (23%), Positives = 69/154 (44%), Gaps = 20/154 (12%)

Query: 6   LTEQETALYDRQIRV--WGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD 63
           + +++   Y RQI +     D Q++L  S +L+ G+ G        +  AGVG+L L DD
Sbjct: 1   MNDRDFMRYSRQILLDDIALDGQQKLLDSQVLIIGLGGLGTPAALYLAGAGVGTLVLADD 60

Query: 64  RVVTEEAWSANF---LIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV--EKGDLSSLDG 118
             V      +N    ++   E++   +  ++V    L   NP ++++   ++    +L  
Sbjct: 61  DDVHL----SNLQRQILFTTEDI--DRPKSQVSQQRLTQLNPDIQLTALQQRLTGEALKD 114

Query: 119 EF--YDKFDVVVVSCC-SVTTKKLINEKCRKLSK 149
                D    VV+ C  ++ T++ IN  C  L+ 
Sbjct: 115 AVARAD----VVLDCTDNMATRQEINAACVALNT 144

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A* Length = 292

 Score = 50.7 bits (122), Expect = 2e-07
 Identities = 28/172 (16%), Positives = 59/172 (34%), Gaps = 32/172 (18%)

Query: 1   MDGEELTEQETA--LYDRQI---RVWGADAQRRLSKSHILVCGMKG---TVAEFCKNIVL 52
           M         ++  +    +   R+       ++    + + G+ G     AE    +  
Sbjct: 1   MGSSHHHHHHSSGLVPRGSMALKRMGIVSDYEKIRTFAVAIVGVGGVGSVTAEM---LTR 57

Query: 53  AGVGSLTLMDDRVVTEEAWSANF--LIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEK 110
            G+G L L D   V      AN   L         G +  +    +L++ NP V   V  
Sbjct: 58  CGIGKLLLFDYDKVEL----ANMNRLFFQPHQA--GLSKVQAAEHTLRNINPDVLFEVHN 111

Query: 111 GDLSSLDGEFYDKFDV------------VVVSCC-SVTTKKLINEKCRKLSK 149
            ++++++   +    +            +V+SC  +   +  IN  C +L +
Sbjct: 112 YNITTVENFQHFMDRISNGGLEEGKPVDLVLSCVDNFEARMTINTACNELGQ 163

>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A Length = 598

 Score = 45.6 bits (108), Expect = 1e-05
 Identities = 25/171 (14%), Positives = 62/171 (36%), Gaps = 29/171 (16%)

Query: 1   MDGEELTEQETAL---YDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGS 57
           +D  ++ +Q   L     +   +   +    +  + +L+ G         + ++  GV  
Sbjct: 295 LDPLKIADQSVDLNLKLMKWRILPDLN-LDIIKNTKVLLLGAGTLGCYVSRALIAWGVRK 353

Query: 58  LTLMDDRVVTEEAWSANF---LIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLS 114
           +T +D+  V+     +N     +   E+   GK  AE+   SLK   P++  +  K  + 
Sbjct: 354 ITFVDNGTVSY----SNPVRQALYNFEDC--GKPKAELAAASLKRIFPLMDATGVKLSIP 407

Query: 115 SLDGEFYD----------------KFDVVVVSCCSVTTKKLINEKCRKLSK 149
            +  +  +                + D++ +   S  ++ L +      +K
Sbjct: 408 MIGHKLVNEEAQHKDFDRLRALIKEHDIIFLLVDSRESRWLPSLLSNIENK 458

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A* Length = 340

 Score = 41.9 bits (99), Expect = 1e-04
 Identities = 27/175 (15%), Positives = 62/175 (35%), Gaps = 37/175 (21%)

Query: 1   MDGEELTEQETAL---YDRQIRVWGADAQRRLSKSHILVCGMKGT----VAEFCKNIVLA 53
            D  ++ +Q   L     +   +   +    +  + +L+ G  GT    V+     ++  
Sbjct: 2   SDPLKIADQSVDLNLKLMKWRILPDLN-LDIIKNTKVLLLGA-GTLGCYVSR---ALIAW 56

Query: 54  GVGSLTLMDDRVVTEEAWSANF---LIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEK 110
           GV  +T +D+  V+     +N     +   E+   GK  AE+   SLK   P++  +  K
Sbjct: 57  GVRKITFVDNGTVSY----SNPVRQALYNFEDC--GKPKAELAAASLKRIFPLMDATGVK 110

Query: 111 GDLSSLDGEFYDKFDV---------------VVVSCC-SVTTKKLINEKCRKLSK 149
             +  +  +  ++                  ++     S  ++ L +      +K
Sbjct: 111 LSIPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFLLVDSRESRWLPSLLSNIENK 165

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	324
1y8q_A	346	Ubiquitin-like 1 activating enzyme E1A; SUMO, hete	100.0
1tt5_A	531	APPBP1, amyloid protein-binding protein 1; cell cy	100.0
3cmm_A	1015	Ubiquitin-activating enzyme E1 1; UBA1, protein tu	100.0
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	100.0
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	100.0
1tt5_B	434	Ubiquitin-activating enzyme E1C isoform 1; cell cy	100.0
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	100.0
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	100.0
2nvu_B	805	Maltose binding protein/NEDD8-activating enzyme E1	100.0
1y8q_B	640	Anthracycline-, ubiquitin-like 2 activating enzyme	100.0
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	100.0
3cmm_A	1015	Ubiquitin-activating enzyme E1 1; UBA1, protein tu	100.0
4gsl_A	615	Ubiquitin-like modifier-activating enzyme ATG7; ub	100.0
3vh1_A	598	Ubiquitin-like modifier-activating enzyme ATG7; au	100.0
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	97.97
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	97.96
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	97.71
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	97.67
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	97.63
3tum_A	269	Shikimate dehydrogenase family protein; rossmann-f	97.53
1id1_A	153	Putative potassium channel protein; RCK domain, E.	97.51
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	97.5
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	97.47
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	97.37
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	97.37
3c85_A	183	Putative glutathione-regulated potassium-efflux S	97.36
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	97.35
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	97.34
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	97.25
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	97.25
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	97.25
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	97.19
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	97.15
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	97.14
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	97.01
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	96.96
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	96.93
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	96.93
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	96.9
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	96.9
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	96.88
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	96.87
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	96.86
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	96.78
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	96.76
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	96.76
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	96.75
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	96.67
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	96.66
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	96.65
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	96.64
3obb_A	300	Probable 3-hydroxyisobutyrate dehydrogenase; struc	96.62
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	96.6
4ezb_A	317	Uncharacterized conserved protein; structural geno	96.58
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	96.58
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	96.57
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	96.57
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	96.55
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	96.54
2ph5_A	480	Homospermidine synthase; alpha-beta protein, struc	96.52
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	96.52
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	96.48
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	96.48
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	96.48
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	96.46
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	96.46
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	96.46
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	96.45
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	96.44
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	96.44
3nzo_A	399	UDP-N-acetylglucosamine 4,6-dehydratase; structura	96.44
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	96.43
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	96.43
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	96.42
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	96.41
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	96.39
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	96.38
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	96.37
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	96.34
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	96.34
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	96.33
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	96.32
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	96.3
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	96.29
3qha_A	296	Putative oxidoreductase; seattle structural genomi	96.28
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	96.28
4g65_A	461	TRK system potassium uptake protein TRKA; structur	96.28
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	96.27
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	96.26
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	96.26
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	96.25
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	96.25
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	96.24
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	96.24
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	96.23
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	96.21
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	96.21
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	96.2
3tl2_A	315	Malate dehydrogenase; center for structural genomi	96.2
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	96.19
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	96.16
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	96.16
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	96.13
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	96.12
3rku_A	287	Oxidoreductase YMR226C; substrate fingerprint, sho	96.12
2x0j_A	294	Malate dehydrogenase; oxidoreductase, hyperthermop	96.12
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	96.08
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	96.07
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	96.06
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	96.05
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	96.04
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	96.03
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	96.02
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	96.0
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	96.0
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	96.0
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	95.96
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	95.94
4egb_A	346	DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce	95.92
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	95.92
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	95.91
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	95.91
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	95.9
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	95.88
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	95.86
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	95.85
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	95.84
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	95.83
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	95.82
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	95.81
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	95.8
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	95.8
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	95.78
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	95.76
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	95.74
1x7d_A	350	Ornithine cyclodeaminase; binds NAD+, binds L-orni	95.74
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	95.74
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	95.73
1lnq_A	336	MTHK channels, potassium channel related protein;	95.72
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	95.7
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	95.68
2i99_A	312	MU-crystallin homolog; thyroid hormine binding pro	95.68
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	95.67
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	95.66
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	95.66
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	95.66
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	95.66
1sb8_A	352	WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN	95.64
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	95.61
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	95.59
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	95.55
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	95.51
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	95.51
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	95.5
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	95.48
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	95.46
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	95.45
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	95.45
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	95.45
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	95.41
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	95.4
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	95.39
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	95.38
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	95.35
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	95.34
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	95.32
4g65_A	461	TRK system potassium uptake protein TRKA; structur	95.29
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	95.27
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	95.26
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	95.24
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	95.24
3sxp_A	362	ADP-L-glycero-D-mannoheptose-6-epimerase; rossman	95.22
2z1m_A	345	GDP-D-mannose dehydratase; short-chain dehydrogena	95.19
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	95.18
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	95.18
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	95.14
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	95.11
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	95.1
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	95.1
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	95.1
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	95.1
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	95.09
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	95.09
1omo_A	322	Alanine dehydrogenase; two-domain, beta-sandwich-d	95.05
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	95.04
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	95.02
2xxj_A	310	L-LDH, L-lactate dehydrogenase; oxidoreductase, hy	95.0
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	95.0
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	94.96
2b69_A	343	UDP-glucuronate decarboxylase 1; UDP-glucoronic ac	94.9
3e48_A	289	Putative nucleoside-diphosphate-sugar epimerase; a	94.86
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	94.86
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	94.85
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	94.83
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	94.82
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	94.81
3ehe_A	313	UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC,	94.8
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	94.8
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	94.78
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	94.73
1p9l_A	245	Dihydrodipicolinate reductase; oxidoreductase, lys	94.73
4fgw_A	391	Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi	94.72
1dih_A	273	Dihydrodipicolinate reductase; oxidoreductase; HET	94.72
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	94.7
2q1s_A	377	Putative nucleotide sugar epimerase/ dehydratase;	94.68
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	94.67
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	94.67
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	94.66
2z1n_A	260	Dehydrogenase; reductase, SDR, oxidoreductase; 1.8	94.63
1sby_A	254	Alcohol dehydrogenase; ternary complex, NAD, trifl	94.61
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	94.55
1ek6_A	348	UDP-galactose 4-epimerase; short-chain dehydrogena	94.51
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	94.49
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	94.48
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	94.45
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	94.43
2jl1_A	287	Triphenylmethane reductase; oxidoreductase, biorem	94.41
3ko8_A	312	NAD-dependent epimerase/dehydratase; isomerase, UD	94.4
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	94.38
4iiu_A	267	3-oxoacyl-[acyl-carrier protein] reductase; struct	94.37
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	94.32
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	94.29
1fmc_A	255	7 alpha-hydroxysteroid dehydrogenase; short-chain	94.27
1rkx_A	357	CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD;	94.26
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	94.25
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	94.23
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	94.21
2c5a_A	379	GDP-mannose-3', 5'-epimerase; short chain dehydrat	94.2
4dqv_A	478	Probable peptide synthetase NRP (peptide synthase;	94.16
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	94.15
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	94.12
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	94.09
3uuw_A	308	Putative oxidoreductase with NAD(P)-binding rossm	94.08
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	94.07
1orr_A	347	CDP-tyvelose-2-epimerase; rossmann fold, short-cha	94.06
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	94.03
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	94.02
2dc1_A	236	L-aspartate dehydrogenase; NAD, oxidoreductase; HE	93.99
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	93.98
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	93.97
3c1o_A	321	Eugenol synthase; phenylpropene, PIP reductase, sh	93.96
1gy8_A	397	UDP-galactose 4-epimerase; oxidoreductase; HET: NA	93.93
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	93.92
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	93.91
2q1w_A	333	Putative nucleotide sugar epimerase/ dehydratase;	93.89
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	93.89
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	93.88
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	93.86
3hhp_A	312	Malate dehydrogenase; MDH, citric acid cycle, TCA	93.85
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	93.84
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	93.83
3hdj_A	313	Probable ornithine cyclodeaminase; APC62486, borde	93.83
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	93.8
2dvm_A	439	Malic enzyme, 439AA long hypothetical malate oxido	93.79
2zat_A	260	Dehydrogenase/reductase SDR family member 4; alpha	93.77
4ea9_A	220	Perosamine N-acetyltransferase; beta helix, acetyl	93.75
3ijp_A	288	DHPR, dihydrodipicolinate reductase; ssgcid, SBRI,	93.75
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	93.72
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	93.69
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	93.68
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	93.67
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	93.67
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	93.65
3afn_B	258	Carbonyl reductase; alpha/beta/alpha, rossmann-fol	93.63
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	93.62
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	93.62
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	93.52
3ai3_A	263	NADPH-sorbose reductase; rossmann-fold, NADPH-depe	93.51
3euw_A	344	MYO-inositol dehydrogenase; protein structure init	93.51
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	93.48
1xu9_A	286	Corticosteroid 11-beta-dehydrogenase, isozyme 1; h	93.47
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	93.47
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	93.45
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	93.44
3oh8_A	516	Nucleoside-diphosphate sugar epimerase (SULA FAMI;	93.43
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	93.43
3qlj_A	322	Short chain dehydrogenase; structural genomics, se	93.43
1u8x_X	472	Maltose-6'-phosphate glucosidase; structural genom	93.41
1yxm_A	303	Pecra, peroxisomal trans 2-enoyl COA reductase; pe	93.41
3fef_A	450	Putative glucosidase LPLD; gulosidase, structural	93.37
3imf_A	257	Short chain dehydrogenase; structural genomics, in	93.37
3fr7_A	525	Putative ketol-acid reductoisomerase (OS05G057370	93.37
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	93.35
1xq1_A	266	Putative tropinone reducatse; structural genomics,	93.34
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	93.32
2gdz_A	267	NAD+-dependent 15-hydroxyprostaglandin dehydrogen;	93.3
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	93.3
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	93.27
1obb_A	480	Maltase, alpha-glucosidase; glycosidase, sulfinic	93.27
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	93.27
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	93.23
1zem_A	262	Xylitol dehydrogenase; rossmann fold, dinucleotide	93.22
3s55_A	281	Putative short-chain dehydrogenase/reductase; stru	93.21
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	93.21
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	93.18
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	93.15
2bd0_A	244	Sepiapterin reductase; oxidoreductase; HET: NAP BI	93.15
4f6c_A	427	AUSA reductase domain protein; thioester reductase	93.14
2hq1_A	247	Glucose/ribitol dehydrogenase; CTH-1438, structura	93.13
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	93.12
3cxt_A	291	Dehydrogenase with different specificities; rossma	93.11
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	93.1
4hb9_A	412	Similarities with probable monooxygenase; flavin,	93.08
2x6t_A	357	ADP-L-glycero-D-manno-heptose-6-epimerase; isomera	93.08
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	93.07
3q2i_A	354	Dehydrogenase; rossmann fold, UDP-sugar binding, N	93.07
3db2_A	354	Putative NADPH-dependent oxidoreductase; two domai	93.04
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	93.01
2hun_A	336	336AA long hypothetical DTDP-glucose 4,6-dehydrat;	93.0
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	92.98
2wm3_A	299	NMRA-like family domain containing protein 1; unkn	92.93
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	92.92
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	92.91
2o23_A	265	HADH2 protein; HSD17B10, schad, ERAB, type II HADH	92.89
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	92.88
1s6y_A	450	6-phospho-beta-glucosidase; hydrolase, structural	92.87
3tox_A	280	Short chain dehydrogenase; structural genomics, PS	92.86
2glx_A	332	1,5-anhydro-D-fructose reductase; NADP(H) dependen	92.85
1y81_A	138	Conserved hypothetical protein; hyperthermophIle,	92.85
1z45_A	699	GAL10 bifunctional protein; epimerase, mutarotase,	92.84
2zcu_A	286	Uncharacterized oxidoreductase YTFG; alpha-beta sa	92.83
1r6d_A	337	TDP-glucose-4,6-dehydratase; rossmann fold, short-	92.78
3rft_A	267	Uronate dehydrogenase; apoenzyme, rossmann fold, N	92.76
2b4q_A	276	Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier	92.76
2ydy_A	315	Methionine adenosyltransferase 2 subunit beta; oxi	92.75
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	92.75
2pd6_A	264	Estradiol 17-beta-dehydrogenase 8; short-chain deh	92.75
3sc6_A	287	DTDP-4-dehydrorhamnose reductase; RFBD, structural	92.74
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	92.73
2duw_A	145	Putative COA-binding protein; ligand binding prote	92.72
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	92.7
3ec7_A	357	Putative dehydrogenase; alpha-beta, structural gen	92.69
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	92.68
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	92.68
2pnf_A	248	3-oxoacyl-[acyl-carrier-protein] reductase; short	92.64
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	92.63
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	92.63
1geg_A	256	Acetoin reductase; SDR family, oxidoreductase; HET	92.63
3u9l_A	324	3-oxoacyl-[acyl-carrier-protein] reductase; struct	92.59
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	92.59
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	92.59
3ak4_A	263	NADH-dependent quinuclidinone reductase; SDR, (R)-	92.55
3tsc_A	277	Putative oxidoreductase; structural genomics, seat	92.52
4iin_A	271	3-ketoacyl-acyl carrier protein reductase (FABG);	92.51
1xq6_A	253	Unknown protein; structural genomics, protein stru	92.5
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	92.48
3rwb_A	247	TPLDH, pyridoxal 4-dehydrogenase; short chain dehy	92.48
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	92.47
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	92.46
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	92.41
2yq5_A	343	D-isomer specific 2-hydroxyacid dehydrogenase; oxi	92.41
3rih_A	293	Short chain dehydrogenase or reductase; structural	92.41
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	92.4
1o6z_A	303	MDH, malate dehydrogenase; halophilic, ION-binding	92.39
2ejw_A	332	HDH, homoserine dehydrogenase; NAD-dependent, oxid	92.38
4hkt_A	331	Inositol 2-dehydrogenase; structural genomics, nys	92.38
2bgk_A	278	Rhizome secoisolariciresinol dehydrogenase; oxidor	92.36
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	92.33
3a28_C	258	L-2.3-butanediol dehydrogenase; chiral substrate r	92.33
3mz0_A	344	Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd;	92.32
1eq2_A	310	ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin	92.31
1oaa_A	259	Sepiapterin reductase; tetrahydrobiopterin, oxidor	92.31
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	92.31
2bll_A	345	Protein YFBG; decarboxylase, short chain dehydroge	92.29
3n74_A	261	3-ketoacyl-(acyl-carrier-protein) reductase; seatt	92.27
1nff_A	260	Putative oxidoreductase RV2002; directed evolution	92.27
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	92.26
2cfc_A	250	2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor	92.23
3qy9_A	243	DHPR, dihydrodipicolinate reductase; rossmann fold	92.16
2yy7_A	312	L-threonine dehydrogenase; thermolabIle, flavobact	92.09
2cul_A	232	Glucose-inhibited division protein A-related PROT	92.07
3ctm_A	279	Carbonyl reductase; alcohol dehydrogenase, short-c	92.05
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	92.02
1vl0_A	292	DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s	92.01
4e3z_A	272	Putative oxidoreductase protein; PSI-biology, stru	91.99
2c07_A	285	3-oxoacyl-(acyl-carrier protein) reductase; oxidor	91.99
3rc1_A	350	Sugar 3-ketoreductase; sugar biosynthesis, TDP bin	91.97
3grp_A	266	3-oxoacyl-(acyl carrierprotein) reductase; structu	91.92
1spx_A	278	Short-chain reductase family member (5L265); paral	91.91
1sny_A	267	Sniffer CG10964-PA; alpha and beta protein, rossma	91.9
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	91.88
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	91.85
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	91.85
3osu_A	246	3-oxoacyl-[acyl-carrier-protein] reductase; struct	91.84
3ezy_A	344	Dehydrogenase; structural genomics, unknown functi	91.84
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	91.82
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	91.82
4f3y_A	272	DHPR, dihydrodipicolinate reductase; structural ge	91.8
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	91.79
1zk4_A	251	R-specific alcohol dehydrogenase; short chain redu	91.76
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	91.73
4dyv_A	272	Short-chain dehydrogenase/reductase SDR; structura	91.72
5mdh_A	333	Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH	91.71
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	91.71
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	91.7
3u5t_A	267	3-oxoacyl-[acyl-carrier-protein] reductase; struct	91.68
1x1t_A	260	D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S	91.67
3rd5_A	291	Mypaa.01249.C; ssgcid, structural genomics, seattl	91.67
3sc4_A	285	Short chain dehydrogenase (A0QTM2 homolog); ssgcid	91.64
2nwq_A	272	Probable short-chain dehydrogenase; oxidoreductase	91.64
3oid_A	258	Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa	91.61
1xhl_A	297	Short-chain dehydrogenase/reductase family member	91.6
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	91.59
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	91.59
1oc2_A	348	DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos	91.57
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	91.56
2i76_A	276	Hypothetical protein; NADP, dehydrogenase, TM1727,	91.55
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	91.53
3tzq_B	271	Short-chain type dehydrogenase/reductase; ssgcid,	91.51
2vt3_A	215	REX, redox-sensing transcriptional repressor REX;	91.48
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	91.47
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	91.46
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	91.45
3e9m_A	330	Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA,	91.45
2ho3_A	325	Oxidoreductase, GFO/IDH/MOCA family; streptococcus	91.41
1e7w_A	291	Pteridine reductase; dihydrofolate reductase, shor	91.39
3gk3_A	269	Acetoacetyl-COA reductase; acetoacetyl-CO reductas	91.39
1rpn_A	335	GDP-mannose 4,6-dehydratase; short-chain dehydroge	91.38
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	91.37
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	91.36
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	91.35
2ixa_A	444	Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver	91.34
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	91.31
1e6u_A	321	GDP-fucose synthetase; epimerase/reductase, SDR, R	91.3
2hrz_A	342	AGR_C_4963P, nucleoside-diphosphate-sugar epimeras	91.27
3icc_A	255	Putative 3-oxoacyl-(acyl carrier protein) reducta;	91.27
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	91.26
3u3x_A	361	Oxidoreductase; structural genomics, PSI-biology,	91.23
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	91.21
3nv9_A	487	Malic enzyme; rossmann fold, oxidoreductase; 2.25A	91.21
1xkq_A	280	Short-chain reductase family member (5D234); parra	91.19
1xgk_A	352	Nitrogen metabolite repression regulator NMRA; ros	91.17
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	91.15
3cea_A	346	MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore	91.15
1edo_A	244	Beta-keto acyl carrier protein reductase; nucleoti	91.15
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	91.14
2wsb_A	254	Galactitol dehydrogenase; oxidoreductase, SDR, ros	91.14
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	91.11
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	91.1
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	91.1
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	91.1
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	91.07
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	91.07
1hdc_A	254	3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi	91.04
3oec_A	317	Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO;	91.01
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	90.97
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	90.96
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	90.96
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	90.94
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	90.93
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	90.92
2fr1_A	486	Erythromycin synthase, eryai; short chain dehydrog	90.91
3l6e_A	235	Oxidoreductase, short-chain dehydrogenase/reducta;	90.91
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	90.9
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	90.9
1ja9_A	274	4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p	90.9
1n2s_A	299	DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold	90.9
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	90.89
4dqx_A	277	Probable oxidoreductase protein; structural genomi	90.88
3op4_A	248	3-oxoacyl-[acyl-carrier protein] reductase; 3-keto	90.86
2qq5_A	260	DHRS1, dehydrogenase/reductase SDR family member 1	90.85
1tlt_A	319	Putative oxidoreductase (virulence factor MVIM HO;	90.84
4dmm_A	269	3-oxoacyl-[acyl-carrier-protein] reductase; rossma	90.83
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	90.81
2x9g_A	288	PTR1, pteridine reductase; short chain dehydrogena	90.8
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	90.78
2a35_A	215	Hypothetical protein PA4017; alpha-beta-alpha sand	90.77
2pk3_A	321	GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor	90.76
3evn_A	329	Oxidoreductase, GFO/IDH/MOCA family; structural ge	90.76
3ppi_A	281	3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de	90.76
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	90.75
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	90.73
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	90.71
1i24_A	404	Sulfolipid biosynthesis protein SQD1; SDR, short-c	90.71
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	90.7
2c20_A	330	UDP-glucose 4-epimerase; carbohydrate metabolism,	90.69
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	90.63
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	90.59
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	90.57
3ksu_A	262	3-oxoacyl-acyl carrier protein reductase; structur	90.56
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	90.51
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	90.47
4f6l_B	508	AUSA reductase domain protein; thioester reductase	90.47
1o0s_A	605	NAD-ME, NAD-dependent malic enzyme; oxidoreductase	90.47
3st7_A	369	Capsular polysaccharide synthesis enzyme CAP5F; ro	90.47
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	90.46
1hye_A	313	L-lactate/malate dehydrogenase; nucleotide binding	90.46
1yde_A	270	Retinal dehydrogenase/reductase 3; oxidoreductase,	90.46
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	90.45
1n7h_A	381	GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR,	90.43
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	90.43
1mxh_A	276	Pteridine reductase 2; SDR topology, protein-subst	90.42
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	90.4
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	90.38
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	90.38
3ohs_X	334	Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d	90.37
1yo6_A	250	Putative carbonyl reductase sniffer; tyrosine-depe	90.34
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	90.32
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	90.32
4h7p_A	345	Malate dehydrogenase; ssgcid, structural G seattle	90.31

>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*

Probab=100.00  E-value=5e-69  Score=504.12  Aligned_cols=307  Identities=35%  Similarity=0.656  Sum_probs=279.4

Q ss_pred             CCCHHHHHHhHHHHHhhhHHHHHHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCccc
Q 020565            5 ELTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVY   84 (324)
Q Consensus         5 ~l~~~e~~ry~Rqi~l~g~~~q~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~   84 (324)
                      .||++|.+||+||+++||.++|++|++++|+|+|+||+|+++++||+++|||+|+|+|+|.|+.+||+||||+.++|+  
T Consensus        10 ~l~~~~~~rY~Rq~~l~G~~~q~~L~~~~VlivG~GGlG~~ia~~La~~Gvg~itlvD~d~V~~sNL~rq~~~~~~di--   87 (346)
T 1y8q_A           10 GISEEEAAQYDRQIRLWGLEAQKRLRASRVLLVGLKGLGAEIAKNLILAGVKGLTMLDHEQVTPEDPGAQFLIRTGSV--   87 (346)
T ss_dssp             CCCHHHHHHHHHHHHHHCHHHHHHHHTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBCCSSCGGGCTTSCSSCT--
T ss_pred             cCCHHHHHHHHHHHHhhCHHHHHHHhCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEECCCcchhhCCCCCccccccC--
Confidence            689999999999999999999999999999999999999999999999999999999999999999999999999999  


Q ss_pred             CCccHHHHHHHHHHhhCCCCeEeEeeCCCCCCchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEeeecCceEE
Q 020565           85 GGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGE  164 (324)
Q Consensus        85 ~G~~ka~~~~~~l~~lnp~v~v~~~~~~~~~~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~~~~G~~g~  164 (324)
                       |++||++++++|+++||.++++.+...+++...+++++||+||+|+|+.+.+.++|++|++  +++|||.+++.|++|+
T Consensus        88 -G~~Ka~~~~~~l~~lnp~v~v~~~~~~~~~~~~~~~~~~dvVv~~~d~~~~r~~ln~~~~~--~~ip~i~~~~~G~~G~  164 (346)
T 1y8q_A           88 -GRNRAEASLERAQNLNPMVDVKVDTEDIEKKPESFFTQFDAVCLTCCSRDVIVKVDQICHK--NSIKFFTGDVFGYHGY  164 (346)
T ss_dssp             -TSBHHHHHHHHHHHTCTTSEEEEECSCGGGCCHHHHTTCSEEEEESCCHHHHHHHHHHHHH--TTCEEEEEEEEBTEEE
T ss_pred             -cCCHHHHHHHHHHhHCCCeEEEEEecccCcchHHHhcCCCEEEEcCCCHHHHHHHHHHHHH--cCCCEEEEeecccEEE
Confidence             9999999999999999999999998887766788899999999999999999999999999  9999999999999999


Q ss_pred             EEEecCceeeeecCcc------------------------cccccccCCCChHHhhccCcc--cC---CCchhHHHHHHH
Q 020565          165 IFVDLQNHKYSKQKIE------------------------ETIECQLRYPSFEEAISVPWR--AL---PRKASKLYFALR  215 (324)
Q Consensus       165 v~~d~~~~~~~~~~~~------------------------~~~~~~~~f~~~~e~l~~~~~--~~---~~~~~~~~~~~~  215 (324)
                      +|+|+|+|.+....++                        .+.+|+..|+++++++..+|.  .+   ..+.+.+|++++
T Consensus       165 v~~d~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~  244 (346)
T 1y8q_A          165 TFANLGEHEFVEEKTKVAKVSQGVEDGPDTKRAKLDSSETTMVKKKVVFCPVKEALEVDWSSEKAKAALKRTTSDYFLLQ  244 (346)
T ss_dssp             EEEECSEEEEEEECC-----------------------CCCEEEEEEECCCHHHHTSCCSCSHHHHHHHTTSCTHHHHHH
T ss_pred             EEEecCCCCEEEcCCCCcCCCcccccCCCCCcccccCCceEEEeceeeccCHHHHhcCCchhhhhhhhcccccHHHHHHH
Confidence            9999998877643322                        235678899999999999987  22   356788999999


Q ss_pred             HHHHHHHHhCCCCC-CCCcccHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhcCCcccchhHHHHHHHHHHHHHHHhcC
Q 020565          216 VLEQFEEAEGRSPG-EISIADLPAVLKLKKELCEANALNASHVTDSLLERLIIGTREFTPVCAVVGGILGQEVIKAISCK  294 (324)
Q Consensus       216 ~l~~f~~~~~~~p~-~~~~~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~p~~av~Ggi~aqEviK~itg~  294 (324)
                      ++++|++.|+++|. ..+.+|++.++++++++++..+++...++++++++   ..++++|++|++||++||||||++||+
T Consensus       245 al~~f~~~~~~~P~~~~~~~d~~~l~~~a~~~~~~~~~~~~~~~~~~~~~---~~~~l~pv~AiiGGi~aQEviK~it~k  321 (346)
T 1y8q_A          245 VLLKFRTDKGRDPSSDTYEEDSELLLQIRNDVLDSLGISPDLLPEDFVRY---CFSEMAPVCAVVGGILAQEIVKALSQR  321 (346)
T ss_dssp             HHHHHHHHSSSCCCGGGHHHHHHHHHHHHHHHHHTTTCCGGGSCGGGGGS---SCSBCHHHHHHHHHHHHHHHHHHHHTB
T ss_pred             HHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCcccCCHHHHHH---hcCCccHHHHHHHHHHHHHHHHHhcCC
Confidence            99999999999996 35688999999999999998887654566665444   488999999999999999999999999


Q ss_pred             CCcccceEEEeccCCceeEEecCCC
Q 020565          295 GEPLKNFFFFDIMDGKGVVEDVSSP  319 (324)
Q Consensus       295 ~~pl~~~~~~D~~~~~~~~~~~~~~  319 (324)
                      +.|++|||+||+.++.+.++.|+|+
T Consensus       322 ~~Pl~n~~~fD~~~~~~~~~~l~~~  346 (346)
T 1y8q_A          322 DPPHNNFFFFDGMKGNGIVECLGPK  346 (346)
T ss_dssp             SCCCCSEEEEETTTTEEEEECCCC-
T ss_pred             CcccccEEEEEccccceeEEecCCC
Confidence            9999999999999999999999874

>1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A 3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A*

Probab=100.00  E-value=1e-60  Score=469.11  Aligned_cols=300  Identities=26%  Similarity=0.398  Sum_probs=258.8

Q ss_pred             HHHhHHHHHhhhHHHHHHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHH
Q 020565           11 TALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIA   90 (324)
Q Consensus        11 ~~ry~Rqi~l~g~~~q~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka   90 (324)
                      .+||+||+++||.++|++|++++|+|||+||+||++++||+++|||+|+|+|+|.|+.+||+||||++.+|+   |++||
T Consensus        12 ~~rY~Rqi~l~G~~~q~~L~~~~VlvvG~GGlGseiak~La~aGVg~itlvD~D~Ve~sNL~RQ~l~~~~dv---G~~Ka   88 (531)
T 1tt5_A           12 EQKYDRQLRLWGDHGQEALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSI---GKNRA   88 (531)
T ss_dssp             HHHTHHHHHHHHHHHHHHHHHCEEEEECCSHHHHHHHHHHHTTTCSEEEEECCCBBCHHHHHHCTTCCGGGB---TSBHH
T ss_pred             HHHhhHHHHhcCHHHHHHHhcCeEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEechhhcccCccCChhhc---CcHHH
Confidence            589999999999999999999999999999999999999999999999999999999999999999999999   99999


Q ss_pred             HHHHHHHHhhCCCCeEeEeeCCCCC---CchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEeeecCceEEEEE
Q 020565           91 EVCCDSLKDFNPMVRVSVEKGDLSS---LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFV  167 (324)
Q Consensus        91 ~~~~~~l~~lnp~v~v~~~~~~~~~---~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~~~~G~~g~v~~  167 (324)
                      ++++++|+++||+++++.+...+.+   +..+++++||+||+|+|+.+++..+|++|++  .++|+|.+++.|+.|++++
T Consensus        89 ~~a~~~l~~lNp~v~v~~~~~~~~~~~~~~~~~~~~~DvVi~~~d~~~~r~~ln~~c~~--~~iplI~~~~~G~~G~v~~  166 (531)
T 1tt5_A           89 EAAMEFLQELNSDVSGSFVEESPENLLDNDPSFFCRFTVVVATQLPESTSLRLADVLWN--SQIPLLICRTYGLVGYMRI  166 (531)
T ss_dssp             HHHHHHHHTTCTTSBCCEESSCHHHHHHSCGGGGGGCSEEEEESCCHHHHHHHHHHHHH--TTCCEEEEEEETTEEEEEE
T ss_pred             HHHHHHHHHhCCCCeEEEeCCCcchhhhhhHHHhcCCCEEEEeCCCHHHHHHHHHHHHH--cCCCEEEEEecCCeEEEEE
Confidence            9999999999999999998877653   4567899999999999999999999999999  9999999999999999999


Q ss_pred             ecCceeeeecCccccccc-----------------------------------------------ccCCCC---------
Q 020565          168 DLQNHKYSKQKIEETIEC-----------------------------------------------QLRYPS---------  191 (324)
Q Consensus       168 d~~~~~~~~~~~~~~~~~-----------------------------------------------~~~f~~---------  191 (324)
                      +++.|.+.+.++++..+|                                               .-.+|+         
T Consensus       167 ~~p~~~~~d~~~~~~~~~lr~~~p~P~~~~~~~~~~~~~~~~~~~~~~p~vv~~~~ale~~k~~~~g~~P~~~~~~~~f~  246 (531)
T 1tt5_A          167 IIKEHPVIESHPDNALEDLRLDKPFPELREHFQSYDLDHMEKKDHSHTPWIVIIAKYLAQWYSETNGRIPKTYKEKEDFR  246 (531)
T ss_dssp             ECSCEEESCCCCSSCCCCCCSSSCCHHHHHHHHTCC-------CGGGSCHHHHHHHHHHHHTTTTCCCCCCHHHHHHHHH
T ss_pred             EcCCceeccCCCCCCCCcccccCCCCCchhhhhccCcccccCCCcCCchHHHHHHHHHHHHHHhcCCCCCCchhhHHHHH
Confidence            999887765443210000                                               000010         


Q ss_pred             ---------------hHHhhc-----------------------------------------------------------
Q 020565          192 ---------------FEEAIS-----------------------------------------------------------  197 (324)
Q Consensus       192 ---------------~~e~l~-----------------------------------------------------------  197 (324)
                                     +.|+..                                                           
T Consensus       247 ~~i~~~~~~~~~e~N~~Ea~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~~~s~~Fwil~~alk~F~~~~~~g~lPl~g~i  326 (531)
T 1tt5_A          247 DLIRQGILKPEDEENFEEAIKNVNTALNTTQIPSSIEDIFNDDRCINITKQTPSFWILARALKEFVAKEGQGNLPVRGTI  326 (531)
T ss_dssp             HHHHHTTSSCTTHHHHHHHHHHHHHHSCCCCCCHHHHHHHTSHHHHSCCSSCCHHHHHHHHHHHHHHTTTTTSCCCCCCC
T ss_pred             HHHHhhcccCccccchHHHHHHHHhhcCCccCcHHHHHHhcccccccccCCCchHHHHHHHHHHHHHhcCCCCCCCCCcc
Confidence                           001100                                                           


Q ss_pred             ----------------------------------------cCcccC----------------------------------
Q 020565          198 ----------------------------------------VPWRAL----------------------------------  203 (324)
Q Consensus       198 ----------------------------------------~~~~~~----------------------------------  203 (324)
                                                              .+|..+                                  
T Consensus       327 pDm~s~t~~Y~~lq~iy~~ka~~D~~~v~~~v~~~~~~~~~~~~~i~~~~i~~f~kn~~~l~~i~~~~l~~~~~~~~~~~  406 (531)
T 1tt5_A          327 PDMIADSGKYIKLQNVYREKAKKDAAAVGNHVAKLLQSIGQAPESISEKELKLLCSNSAFLRVVRCRSLAEEYGLDTINK  406 (531)
T ss_dssp             CCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSSSSCHHHHHHHHHTGGGCEEECCCCHHHHHSTTTSCH
T ss_pred             CccccchhcccchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcCCHHHHHHHHhchhhhhcccccchHhhhccccchh
Confidence                                                    001000                                  


Q ss_pred             ---------CCchhHHHHHHHHHHHHHHHhCCCCCCCC---cccHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHh-cCC
Q 020565          204 ---------PRKASKLYFALRVLEQFEEAEGRSPGEIS---IADLPAVLKLKKELCEANALNASHVTDSLLERLII-GTR  270 (324)
Q Consensus       204 ---------~~~~~~~~~~~~~l~~f~~~~~~~p~~~~---~~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~  270 (324)
                               +.+...+|++++++++|.++|+++|+..+   .+|++++.+++++++...+++ +.+++++++++++ +.+
T Consensus       407 ~~~~~~~~~~~~~~~~~~~~~al~~f~~~~gr~P~~~~~~~~~D~~~l~~~~~~~~~~~~~~-~~~~~~~~~e~~r~~~~  485 (531)
T 1tt5_A          407 DEIISSMDNPDNEIVLYLMLRAVDRFHKQQGRYPGVSNYQVEEDIGKLKSCLTGFLQEYGLS-VMVKDDYVHEFCRYGAA  485 (531)
T ss_dssp             HHHHHHTTSTTSTHHHHHHHHHHHHHHHHHSSCTTCSTTTHHHHHHHHHHHHHHHHHHHTCC-CCCCHHHHHHHHHTTTC
T ss_pred             hhhhhhhhccccchHHHHHHHHHHHHHHHhCCCCCccccchHHHHHHHHHHHHHHHHhcCCc-ccccHHHHHHHHHhcCC
Confidence                     12335689999999999999999998776   789999999999999888874 6689999999999 999


Q ss_pred             cccchhHHHHHHHHHHHHHHHhcCCCcccceEEEeccCCceeEEec
Q 020565          271 EFTPVCAVVGGILGQEVIKAISCKGEPLKNFFFFDIMDGKGVVEDV  316 (324)
Q Consensus       271 ~l~p~~av~Ggi~aqEviK~itg~~~pl~~~~~~D~~~~~~~~~~~  316 (324)
                      +++|++|++||++||||||+|||||.|++|||+||+.++++.++.|
T Consensus       486 el~pvaA~~GGi~AQEviK~iT~q~~Pi~n~~~fDg~~~~~~~~~l  531 (531)
T 1tt5_A          486 EPHTIAAFLGGAAAQEVIKIITKQFVIFNNTYIYSGMSQTSATFQL  531 (531)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTCSBCCCSCEEEETTTTEEEECCC
T ss_pred             CcCHHHHHHHHHHHHHHHHHHcCCCccccceEEEecCCceeEEEeC
Confidence            9999999999999999999999999999999999999999998764

>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.9e-58  Score=475.48  Aligned_cols=295  Identities=29%  Similarity=0.446  Sum_probs=263.3

Q ss_pred             HHHHHhHHHHHhhhHHHHHHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCcc
Q 020565            9 QETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKT   88 (324)
Q Consensus         9 ~e~~ry~Rqi~l~g~~~q~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~   88 (324)
                      .+.+||+||+++||.++|++|++++|+|+|+||+|+++|+||+++|||+|+|+|+|.|+.+||+|||+++.+|+   |++
T Consensus         5 id~~rY~Rqi~l~G~~~q~rL~~s~VlIvG~GGlGseiak~La~aGVg~itlvD~D~V~~sNL~RQ~l~~~~dv---G~~   81 (1015)
T 3cmm_A            5 IDESLYSRQLYVLGKEAMLKMQTSNVLILGLKGLGVEIAKNVVLAGVKSMTVFDPEPVQLADLSTQFFLTEKDI---GQK   81 (1015)
T ss_dssp             CCHHHHHHHHHHSCHHHHHHHTTCEEEEECCSHHHHHHHHHHHHHCCSEEEEECCSBCCGGGGGTCTTCCGGGT---TSB
T ss_pred             hhhHhccchHhhcCHHHHHHHhcCEEEEECCChHHHHHHHHHHHcCCCeEEEecCCEechhhhccccccChhhc---ChH
Confidence            34579999999999999999999999999999999999999999999999999999999999999999999999   999


Q ss_pred             HHHHHHHHHHhhCCCCeEeEeeCCCCCCchhhcCCccEEEEcCC-CHHHHHHHHHHHHhccCCccEEEeeecCceEEEEE
Q 020565           89 IAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEFYDKFDVVVVSCC-SVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFV  167 (324)
Q Consensus        89 ka~~~~~~l~~lnp~v~v~~~~~~~~~~~~~~~~~~diVi~~~~-~~~~~~~l~~~~~~~~~~ip~i~~~~~G~~g~v~~  167 (324)
                      ||++++++|+++||+++++.+...++   .+++++||+||+|.| +.+++..||++|++  +++|||++++.|++|++|+
T Consensus        82 Ka~a~~~~L~~lNP~v~v~~~~~~l~---~~~l~~~DvVv~~~d~~~~~r~~ln~~c~~--~~iplI~~~~~G~~G~v~~  156 (1015)
T 3cmm_A           82 RGDVTRAKLAELNAYVPVNVLDSLDD---VTQLSQFQVVVATDTVSLEDKVKINEFCHS--SGIRFISSETRGLFGNTFV  156 (1015)
T ss_dssp             HHHHHHHHHTTSCTTSCEEECCCCCC---STTGGGCSEEEECTTSCHHHHHHHHHHHHH--HTCEEEEEEEETTEEEEEE
T ss_pred             HHHHHHHHHHHHCCCCeEEEecCCCC---HHHHhcCCEEEEcCCCCHHHHHHHHHHHHH--cCCCEEEEEecccEEEEEe
Confidence            99999999999999999999887764   367889999999999 99999999999999  9999999999999999999


Q ss_pred             ecCc-eeeeecCccc-----------------------------------------------------------------
Q 020565          168 DLQN-HKYSKQKIEE-----------------------------------------------------------------  181 (324)
Q Consensus       168 d~~~-~~~~~~~~~~-----------------------------------------------------------------  181 (324)
                      |+|. |.+...+++.                                                                 
T Consensus       157 d~~~~~~c~~~~~~~p~~~~i~~i~~p~~v~~l~~~~h~~~~gd~v~F~ev~gm~elN~~e~~~i~~~~p~~f~I~Dts~  236 (1015)
T 3cmm_A          157 DLGDEFTVLDPTGEEPRTGMVSDIEPDGTVTMLDDNRHGLEDGNFVRFSEVEGLDKLNDGTLFKVEVLGPFAFRIGSVKE  236 (1015)
T ss_dssp             ECCSCEEESBSSCCCCCEEEEEEECTTCEEEESTTCCCCCCTTCEEEEECCBTSGGGGSSCCEECEEEETTEEECSCCTT
T ss_pred             cCCCceEEeeCCCCCCccccccCCCCCceeEeeecccccCCCCCeEEEEeeccchhhcCccceeeEEcCCceeEecccch
Confidence            9984 4443221100                                                                 


Q ss_pred             -------------ccccccCCCChHHhhccCcccC-----CCchhHHHHHHHHHHHHHHHh-CCCCCCCCcccHHHHHHH
Q 020565          182 -------------TIECQLRYPSFEEAISVPWRAL-----PRKASKLYFALRVLEQFEEAE-GRSPGEISIADLPAVLKL  242 (324)
Q Consensus       182 -------------~~~~~~~f~~~~e~l~~~~~~~-----~~~~~~~~~~~~~l~~f~~~~-~~~p~~~~~~d~~~~~~~  242 (324)
                                   +.+..+.|++++++++.||.-.     +.+...+|+++++|++|.++| +++|+..+.+|++++.++
T Consensus       237 ~~~yv~~g~~~qvk~p~~i~f~~l~~~l~~p~~l~~d~~k~~~~~~l~~~~~Al~~F~~~~~gr~P~~~~~~D~~~l~~~  316 (1015)
T 3cmm_A          237 YGEYKKGGIFTEVKVPRKISFKSLKQQLSNPEFVFSDFAKFDRAAQLHLGFQALHQFAVRHNGELPRTMNDEDANELIKL  316 (1015)
T ss_dssp             TCCCCBCCEEEECCCCEEECCCCHHHHHHSCCBCCSCGGGTHHHHHHHHHHHHHHHHHHHTTTCCCCTTCHHHHHHHHHH
T ss_pred             hhhhhcCceeEEecCCcccCHHHHHHHHcChHHHHHHHhccCcchHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHH
Confidence                         1234568999999998886422     245678999999999999999 999999999999999999


Q ss_pred             HHHHHHHcCCC--C-CCCCHHHHHHHHh-cCCcccchhHHHHHHHHHHHHHHHhcCCCcccceEEEeccCCce
Q 020565          243 KKELCEANALN--A-SHVTDSLLERLII-GTREFTPVCAVVGGILGQEVIKAISCKGEPLKNFFFFDIMDGKG  311 (324)
Q Consensus       243 ~~~~~~~~~~~--~-~~v~~~~~~~~~~-~~~~l~p~~av~Ggi~aqEviK~itg~~~pl~~~~~~D~~~~~~  311 (324)
                      +++++...+.+  . ..+++++++++++ +.++++|++|++||++||||||+|||||.|++||++||+.++..
T Consensus       317 a~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~el~pvaA~iGGivAQEVIKaiT~kf~Pi~~~~~~d~~~~~~  389 (1015)
T 3cmm_A          317 VTDLSVQQPEVLGEGVDVNEDLIKELSYQARGDIPGVVAFFGGLVAQEVLKACSGKFTPLKQFMYFDSLESLP  389 (1015)
T ss_dssp             HHHHHHHCHHHHCTTCCCCHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHCBSCCCCSEEEEECGGGSC
T ss_pred             HHHHHHhcCCCccccccCcHHHHHHHHHhcCcccCcHHHHhcchHHHHHHHHhccCCCcccceEEecchhhcc
Confidence            99998875532  1 4689999999999 99999999999999999999999999999999999999998865

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=100.00  E-value=5.3e-46  Score=333.86  Aligned_cols=233  Identities=22%  Similarity=0.307  Sum_probs=197.9

Q ss_pred             CCHHHHHHhHHHHHh--hhHHHHHHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcc
Q 020565            6 LTEQETALYDRQIRV--WGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENV   83 (324)
Q Consensus         6 l~~~e~~ry~Rqi~l--~g~~~q~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~   83 (324)
                      ||++|.+||+||+++  ||.++|++|++++|+|+|+||+|++++++|+++||++|+|+|.|.|+.+||+||++++.+|+ 
T Consensus         1 l~~~e~~ry~Rq~~l~~~g~~~q~~l~~~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d~v~~sNL~Rq~l~~~~di-   79 (251)
T 1zud_1            1 MNDRDFMRYSRQILLDDIALDGQQKLLDSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDI-   79 (251)
T ss_dssp             CCHHHHHHTHHHHTSTTTHHHHHHHHHTCEEEEECCSTTHHHHHHHHHHTTCSEEEEECCCBCCGGGTTTCTTCCGGGT-
T ss_pred             CCHHHHHHhhhhcchhhcCHHHHHHHhcCcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCCCcccccCCCCccCChhhC-
Confidence            688999999999999  99999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             cCCccHHHHHHHHHHhhCCCCeEeEeeCCCCC-CchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEeeecCce
Q 020565           84 YGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSS-LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSC  162 (324)
Q Consensus        84 ~~G~~ka~~~~~~l~~lnp~v~v~~~~~~~~~-~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~~~~G~~  162 (324)
                        |++|+++++++|+++||.++++.+...++. ...++++++|+||+|+|+.+++..+|++|++  .++|+|++++.|+.
T Consensus        80 --G~~Ka~~~~~~l~~~np~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~d~~~~r~~l~~~~~~--~~~p~i~~~~~g~~  155 (251)
T 1zud_1           80 --DRPKSQVSQQRLTQLNPDIQLTALQQRLTGEALKDAVARADVVLDCTDNMATRQEINAACVA--LNTPLITASAVGFG  155 (251)
T ss_dssp             --TSBHHHHHHHHHHHHCTTSEEEEECSCCCHHHHHHHHHHCSEEEECCSSHHHHHHHHHHHHH--TTCCEEEEEEEBTE
T ss_pred             --CCHHHHHHHHHHHHHCCCCEEEEEeccCCHHHHHHHHhcCCEEEECCCCHHHHHHHHHHHHH--hCCCEEEEeccccc
Confidence              999999999999999999999998877764 4467788999999999999999999999999  99999999999999


Q ss_pred             EEEEEecCceeeeecCcccccccccCCCChHHhhccCcccCCCchhHHHHHHHHHHHHHHHhCCCCCCCCcccHHHHHHH
Q 020565          163 GEIFVDLQNHKYSKQKIEETIECQLRYPSFEEAISVPWRALPRKASKLYFALRVLEQFEEAEGRSPGEISIADLPAVLKL  242 (324)
Q Consensus       163 g~v~~d~~~~~~~~~~~~~~~~~~~~f~~~~e~l~~~~~~~~~~~~~~~~~~~~l~~f~~~~~~~p~~~~~~d~~~~~~~  242 (324)
                      |++++..+..         ..+|                            ++|+.      ...|.             
T Consensus       156 G~v~~~~p~~---------~~~c----------------------------~~cl~------~~~~~-------------  179 (251)
T 1zud_1          156 GQLMVLTPPW---------EQGC----------------------------YRCLW------PDNQE-------------  179 (251)
T ss_dssp             EEEEEECTTC---------TTCC----------------------------HHHHC------C-----------------
T ss_pred             eEEEEEccCC---------CCCc----------------------------EEEeC------CCCCC-------------
Confidence            9998522100         0122                            22221      00010             


Q ss_pred             HHHHHHHcCCCCCCCCHHHHHHHHhcCCcccchhHHHHHHHHHHHHHHHhcCCCcccceEEEeccCCceeEEecCC
Q 020565          243 KKELCEANALNASHVTDSLLERLIIGTREFTPVCAVVGGILGQEVIKAISCKGEPLKNFFFFDIMDGKGVVEDVSS  318 (324)
Q Consensus       243 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~p~~av~Ggi~aqEviK~itg~~~pl~~~~~~D~~~~~~~~~~~~~  318 (324)
                      ....|...+                   .++|+++++|+++|+|++|+|+|.+.|++++++||+.+++...+.+.+
T Consensus       180 ~~~~~~~~g-------------------~~~p~~~~~g~~~A~e~lk~l~g~~~~~~~~~~~d~~~~~~~~~~~~~  236 (251)
T 1zud_1          180 PERNCRTAG-------------------VVGPVVGVMGTLQALEAIKLLSGIETPAGELRLFDGKSSQWRSLALRR  236 (251)
T ss_dssp             -------CC-------------------BCHHHHHHHHHHHHHHHHHHHHTCCCCCSEEEEEETTTTEEEEEECCC
T ss_pred             CCCccccCC-------------------chHHHHHHHHHHHHHHHHHHHhCCCCcCCcEEEEECCCCEEEEEecCC
Confidence            001222233                   399999999999999999999999999877999999999998888875

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=100.00  E-value=2.6e-44  Score=322.59  Aligned_cols=234  Identities=24%  Similarity=0.319  Sum_probs=197.9

Q ss_pred             CCCHHHHHHhHHHHHh--hhHHHHHHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCc
Q 020565            5 ELTEQETALYDRQIRV--WGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDEN   82 (324)
Q Consensus         5 ~l~~~e~~ry~Rqi~l--~g~~~q~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di   82 (324)
                      +||++|.+||+||+++  ||.++|++|++++|+|+|+||+|++++++|+++|+++|+|+|.|.|+.+||+||+++..+|+
T Consensus         3 ~l~~~e~~ry~Rq~~l~~~g~~~q~~l~~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~v~~sNl~Rq~l~~~~di   82 (249)
T 1jw9_B            3 ELSDQEMLRYNRQIILRGFDFDGQEALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATV   82 (249)
T ss_dssp             CCCHHHHHHTHHHHTSTTTHHHHHHHHHHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGT
T ss_pred             CCCHHHHHHhhheecccccCHHHHHHHhCCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCCcccccCCcccccChhhc
Confidence            3999999999999999  99999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCccHHHHHHHHHHhhCCCCeEeEeeCCCCC-CchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEeeecCc
Q 020565           83 VYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSS-LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDS  161 (324)
Q Consensus        83 ~~~G~~ka~~~~~~l~~lnp~v~v~~~~~~~~~-~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~~~~G~  161 (324)
                         |++|+++++++++++||.++++.+...+++ ...++++++|+||+|+|+.+++..++++|++  .++|+|++++.|+
T Consensus        83 ---G~~Ka~~~~~~l~~~np~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~d~~~~~~~l~~~~~~--~~~p~i~~~~~g~  157 (249)
T 1jw9_B           83 ---GQPKVESARDALTRINPHIAITPVNALLDDAELAALIAEHDLVLDCTDNVAVRNQLNAGCFA--AKVPLVSGAAIRM  157 (249)
T ss_dssp             ---TSBHHHHHHHHHHHHCTTSEEEEECSCCCHHHHHHHHHTSSEEEECCSSHHHHHHHHHHHHH--HTCCEEEEEEEBT
T ss_pred             ---CcHHHHHHHHHHHHHCCCcEEEEEeccCCHhHHHHHHhCCCEEEEeCCCHHHHHHHHHHHHH--cCCCEEEeeeccc
Confidence               999999999999999999999998877764 3456788999999999999999999999999  9999999999999


Q ss_pred             eEEEEEecCceeeeecCcccccccccCCCChHHhhccCcccCCCchhHHHHHHHHHHHHHHHhCCCCCCCCcccHHHHHH
Q 020565          162 CGEIFVDLQNHKYSKQKIEETIECQLRYPSFEEAISVPWRALPRKASKLYFALRVLEQFEEAEGRSPGEISIADLPAVLK  241 (324)
Q Consensus       162 ~g~v~~d~~~~~~~~~~~~~~~~~~~~f~~~~e~l~~~~~~~~~~~~~~~~~~~~l~~f~~~~~~~p~~~~~~d~~~~~~  241 (324)
                      .|++++..+.    .     ..+|                            ++|+  |    ...|.      .     
T Consensus       158 ~g~v~~~~p~----~-----~~~c----------------------------~~c~--~----~~~~~------~-----  183 (249)
T 1jw9_B          158 EGQITVFTYQ----D-----GEPC----------------------------YRCL--S----RLFGE------N-----  183 (249)
T ss_dssp             EEEEEEECCC----T-----TCCC----------------------------THHH--H----TTCCC------------
T ss_pred             eEEEEEEeCC----C-----CCCc----------------------------eEEE--C----CCCCc------c-----
Confidence            9999852110    0     0122                            1222  1    01110      0     


Q ss_pred             HHHHHHHHcCCCCCCCCHHHHHHHHhcCCcccchhHHHHHHHHHHHHHHHhcCCCcccc-eEEEeccCCceeEEecCC
Q 020565          242 LKKELCEANALNASHVTDSLLERLIIGTREFTPVCAVVGGILGQEVIKAISCKGEPLKN-FFFFDIMDGKGVVEDVSS  318 (324)
Q Consensus       242 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~p~~av~Ggi~aqEviK~itg~~~pl~~-~~~~D~~~~~~~~~~~~~  318 (324)
                        ...|...+                   .++|+++++|+++|+|+||+|+|.+.|+.+ +++||+.+++...+.+.+
T Consensus       184 --~~~c~~~g-------------------~~~~~~~~~g~~~a~e~lk~l~g~~~~~~~~~~~~d~~~~~~~~~~~~~  240 (249)
T 1jw9_B          184 --ALTCVEAG-------------------VMAPLIGVIGSLQAMEAIKMLAGYGKPASGKIVMYDAMTCQFREMKLMR  240 (249)
T ss_dssp             --------CC-------------------BCHHHHHHHHHHHHHHHHHHHHTCSCCCBSEEEEEETTTTEEEEEECCC
T ss_pred             --cccccccC-------------------CcchHHHHHHHHHHHHHHHHHhCCCCCccCeEEEEECCCCEEEEEecCC
Confidence              01122233                   399999999999999999999999999864 999999999988888875

>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B*

Probab=100.00  E-value=3.3e-43  Score=336.92  Aligned_cols=291  Identities=19%  Similarity=0.278  Sum_probs=225.5

Q ss_pred             HHHhHHHHHhhhHHH-------------H-HHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcc
Q 020565           11 TALYDRQIRVWGADA-------------Q-RRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFL   76 (324)
Q Consensus        11 ~~ry~Rqi~l~g~~~-------------q-~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l   76 (324)
                      ..||.++-++|+.++             + .+|++++|+|||+||+||+++++|+++|||+|+|+|+|.|+.+||+|||+
T Consensus         6 ~~r~~~vntl~~~~g~~~g~gf~~g~e~~~~~L~~~~VlvvG~GGlGs~va~~La~aGvg~i~ivD~D~Ve~sNL~RQ~l   85 (434)
T 1tt5_B            6 EGRWNHVKKFLERSGPFTHPDFEPSTESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFL   85 (434)
T ss_dssp             TTTTHHHHHHHHSCCSSCCTTCCCCSSHHHHHHHTCCEEEECSSTHHHHHHHHHHHTTCCCEEEEECCBCCGGGTTTCTT
T ss_pred             hhhhccceEEEcCCCcccccccccCHHHHHHHhcCCEEEEECcCHHHHHHHHHHHHcCCCEEEEEcCCEechhccCCCcC
Confidence            458899999987654             5 45699999999999999999999999999999999999999999999999


Q ss_pred             cCCCCcccCCccHHHHHHHHHHhhCCCCeEeEeeCCCCCCchhhcCCccEEEEcCCCHHHHHHHHHHHHhc---------
Q 020565           77 IPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKL---------  147 (324)
Q Consensus        77 ~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~~~~~~~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~---------  147 (324)
                      ++.+|+   |++||++++++|+++||.++++.+...+.+...++++++|+||+|+|+.++|.++|+.|+++         
T Consensus        86 ~~~~di---G~~Ka~~a~~~l~~lnp~v~v~~~~~~i~~~~~~~~~~~DlVi~~~Dn~~~R~~in~~c~~~~~~~~g~~~  162 (434)
T 1tt5_B           86 FRPKDI---GRPKAEVAAEFLNDRVPNCNVVPHFNKIQDFNDTFYRQFHIIVCGLDSIIARRWINGMLISLLNYEDGVLD  162 (434)
T ss_dssp             CCGGGT---TSBHHHHHHHHHHHHSTTCCCEEEESCGGGBCHHHHTTCSEEEECCSCHHHHHHHHHHHHHTCCBSSSCBC
T ss_pred             CChhHc---CcHHHHHHHHHHHhhCCCCEEEEEecccchhhHHHhcCCCEEEECCCCHHHHHHHHHHHHHhhhccccccc
Confidence            999999   99999999999999999999999988887666788999999999999999999999999872         


Q ss_pred             -cCCccEEEeeecCceEEEEEecCceeeeecCccccccc-ccCCCChHHhhccCccc---CCCch-hHHHHHHHHHHHHH
Q 020565          148 -SKRVAFYTVDCRDSCGEIFVDLQNHKYSKQKIEETIEC-QLRYPSFEEAISVPWRA---LPRKA-SKLYFALRVLEQFE  221 (324)
Q Consensus       148 -~~~ip~i~~~~~G~~g~v~~d~~~~~~~~~~~~~~~~~-~~~f~~~~e~l~~~~~~---~~~~~-~~~~~~~~~l~~f~  221 (324)
                       ..++|+|++++.|+.|++++.++..          .+| +|.|+.....-..|+..   .|+.. +++.++...+  |.
T Consensus       163 ~~~~iPli~~~~~g~~G~v~v~~p~~----------t~Cy~C~~~~~p~~~~~p~Ct~~~~p~~~~h~i~~a~~i~--~~  230 (434)
T 1tt5_B          163 PSSIVPLIDGGTEGFKGNARVILPGM----------TACIECTLELYPPQVNFPMCTIASMPRLPEHCIEYVRMLQ--WP  230 (434)
T ss_dssp             GGGCCCEEEEEEETTEEEEEEECTTT----------SCCGGGGGGGSCCCCCCCHHHHHHCCCSHHHHHHHHHHTH--HH
T ss_pred             cccCCcEEEeccccceeEEEEECCCC----------CCCcccccCCCCCcCCCcccccccCCcchhHHHHHHHHHH--Hh
Confidence             1389999999999999999866531          133 33221110000112111   12111 1222333333  33


Q ss_pred             HHhCCC-CCCC---CcccHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHh-cCCcccchhHHHHHHHHHHHHHHHhcCCC
Q 020565          222 EAEGRS-PGEI---SIADLPAVLKLKKELCEANALNASHVTDSLLERLII-GTREFTPVCAVVGGILGQEVIKAISCKGE  296 (324)
Q Consensus       222 ~~~~~~-p~~~---~~~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~l~p~~av~Ggi~aqEviK~itg~~~  296 (324)
                      ..++.. |...   +.++.+.+.+.+++.|+..|+.  .++..++..++. ..++++|++|++||++|+|+||+|+|.+.
T Consensus       231 ~~~~~~~~~~~d~d~~~~~~~v~~~a~~~~~~~gi~--~~~~~~~~gv~~~iipaia~t~aiig~l~a~EaiK~l~g~~~  308 (434)
T 1tt5_B          231 KEQPFGEGVPLDGDDPEHIQWIFQKSLERASQYNIR--GVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFKIATSAYI  308 (434)
T ss_dssp             HSCTTCTTCCCCTTCHHHHHHHHHHHHHHHHHTTCC--CCCHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHTCSC
T ss_pred             hhcccccccccCCCcHHHHHHHHHHHHHHHHHcCCC--ccCHHHHHhHhhccCcccccHHHHHHHHHHHHHHHHHhCCCc
Confidence            333221 1111   2334566677788889999984  467778888888 88999999999999999999999999999


Q ss_pred             cccceEEEeccCCc-eeEEecCC
Q 020565          297 PLKNFFFFDIMDGK-GVVEDVSS  318 (324)
Q Consensus       297 pl~~~~~~D~~~~~-~~~~~~~~  318 (324)
                      |++|+++||+.++. ...+.+.+
T Consensus       309 ~l~~~l~~d~~~~~~~~~~~~~~  331 (434)
T 1tt5_B          309 PLNNYLVFNDVDGLYTYTFEAER  331 (434)
T ss_dssp             CCCSEEEEECSBSCEEEEECCCC
T ss_pred             ccCceEEEEcCCCceeEEEeccC
Confidence            99999999999887 44666654

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=100.00  E-value=5.8e-43  Score=318.48  Aligned_cols=231  Identities=16%  Similarity=0.241  Sum_probs=166.2

Q ss_pred             HHhHHHHHh--hhH-HHHHHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCcc
Q 020565           12 ALYDRQIRV--WGA-DAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKT   88 (324)
Q Consensus        12 ~ry~Rqi~l--~g~-~~q~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~   88 (324)
                      --|+|||.|  ||. ++|++|++++|+|||+||+||+++++|+++|||+|+|+|.|.|+.+||+||+ |..+|+   |++
T Consensus        14 ~~y~r~i~L~~~G~~~~q~kL~~~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D~Ve~sNL~Rq~-~~~~di---G~~   89 (292)
T 3h8v_A           14 LVPRGSMALKRMGIVSDYEKIRTFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRLF-FQPHQA---GLS   89 (292)
T ss_dssp             ------------------CGGGGCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBC-------------CCT---TSB
T ss_pred             CCchHhhcccccChHHHHHHHhCCeEEEECcCHHHHHHHHHHHHcCCCEEEEECCCccChhhccccc-CChhhc---Cch
Confidence            359999999  998 9999999999999999999999999999999999999999999999999986 588999   999


Q ss_pred             HHHHHHHHHHhhCCCCeEeEeeCCCCC--Cchhhc-----------CCccEEEEcCCCHHHHHHHHHHHHhccCCccEEE
Q 020565           89 IAEVCCDSLKDFNPMVRVSVEKGDLSS--LDGEFY-----------DKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYT  155 (324)
Q Consensus        89 ka~~~~~~l~~lnp~v~v~~~~~~~~~--~~~~~~-----------~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~  155 (324)
                      |+++++++|+++||+++++.+...+++  ..++++           +++|+||+|+|++++|..+|++|++  .++|||+
T Consensus        90 Ka~aa~~~L~~iNP~v~v~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~DlVid~~Dn~~~R~~in~~c~~--~~~Pli~  167 (292)
T 3h8v_A           90 KVQAAEHTLRNINPDVLFEVHNYNITTVENFQHFMDRISNGGLEEGKPVDLVLSCVDNFEARMTINTACNE--LGQTWME  167 (292)
T ss_dssp             HHHHHHHHHHHHCTTSEEEEECCCTTSHHHHHHHHHHHHHBSSSTTBCCSEEEECCSSHHHHHHHHHHHHH--HTCCEEE
T ss_pred             HHHHHHHHHHhhCCCcEEEEecccCCcHHHHHHHhhhhcccccccCCCCCEEEECCcchhhhhHHHHHHHH--hCCCEEE
Confidence            999999999999999999999988875  234443           6899999999999999999999999  9999999


Q ss_pred             eeecC--ceEEEEEecCceeeeecCccccccc-ccCCCChHHhhccCcccCCCchhHHHHHHHHHHHHHHHhCCCCCCCC
Q 020565          156 VDCRD--SCGEIFVDLQNHKYSKQKIEETIEC-QLRYPSFEEAISVPWRALPRKASKLYFALRVLEQFEEAEGRSPGEIS  232 (324)
Q Consensus       156 ~~~~G--~~g~v~~d~~~~~~~~~~~~~~~~~-~~~f~~~~e~l~~~~~~~~~~~~~~~~~~~~l~~f~~~~~~~p~~~~  232 (324)
                      +++.|  +.|++.+..+.          ..+| +|.||....                                   .. 
T Consensus       168 ~gv~~~~~~Gqv~~~~pg----------~t~Cy~Cl~p~~~~-----------------------------------~~-  201 (292)
T 3h8v_A          168 SGVSENAVSGHIQLIIPG----------ESACFACAPPLVVA-----------------------------------AN-  201 (292)
T ss_dssp             EEECTTSSEEEEEEECTT----------TSCCTTSSSCCCCC-----------------------------------CC-
T ss_pred             eeeecceeEEEEEEECCC----------CCCCHhhcCCcccc-----------------------------------cc-
Confidence            99985  89998853321          2356 555553210                                   00 


Q ss_pred             cccHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhcCCcccchhHHHHHHHHHHHHHHHhcCCCcccceEEEeccCCcee
Q 020565          233 IADLPAVLKLKKELCEANALNASHVTDSLLERLIIGTREFTPVCAVVGGILGQEVIKAISCKGEPLKNFFFFDIMDGKGV  312 (324)
Q Consensus       233 ~~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~p~~av~Ggi~aqEviK~itg~~~pl~~~~~~D~~~~~~~  312 (324)
                       .+.        ..|+..++               +.+.++|+.+++|+++|+|+||+|+|.++| ..++.||+.+++..
T Consensus       202 -~~~--------~~~~~~gv---------------c~~~l~~~~g~vgslqA~EalK~L~g~g~~-~~ll~~D~~~~~~~  256 (292)
T 3h8v_A          202 -IDE--------KTLKREGV---------------CAASLPTTMGVVAGILVQNVLKFLLNFGTV-SFYLGYNAMQDFFP  256 (292)
T ss_dssp             ----------------CHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHTCSCC-CSEEEEETTTTBCC
T ss_pred             -ccc--------cchhhcCc---------------ccCCcchHHHHHHHHHHHHHHHHHhCCCCC-CeEEEEECCCCcEE
Confidence             000        00111110               011289999999999999999999999988 47999999999999


Q ss_pred             EEecCCC
Q 020565          313 VEDVSSP  319 (324)
Q Consensus       313 ~~~~~~~  319 (324)
                      .+.+.+.
T Consensus       257 ~~~~~~~  263 (292)
T 3h8v_A          257 TMSMKPN  263 (292)
T ss_dssp             EECCCCC
T ss_pred             EEecCCC
Confidence            9998864

>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1

Probab=100.00  E-value=2.1e-40  Score=342.22  Aligned_cols=279  Identities=20%  Similarity=0.284  Sum_probs=222.3

Q ss_pred             hhhHHHHHHH-hcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHH
Q 020565           20 VWGADAQRRL-SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLK   98 (324)
Q Consensus        20 l~g~~~q~~l-~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~   98 (324)
                      .+|.++|+++ ++++|+|||+||+||+++++|+++|||+|+|+|.|.|+.+||+|||+++.+|+   |++|+++++++|+
T Consensus       399 ~~g~~~~~~~l~~~~vlvvG~GglG~~~~~~L~~~Gvg~i~l~D~d~v~~snl~rq~~~~~~~v---g~~Ka~~~~~~l~  475 (805)
T 2nvu_B          399 EPSTESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDI---GRPKAEVAAEFLN  475 (805)
T ss_dssp             CCCSHHHHHHHHTCCEEEECCSSHHHHHHHHHHTTTCCEEEEEECCBCCGGGGGTCTTCCGGGT---TSBHHHHHHHHHH
T ss_pred             CCCHHHHHHHHhCCeEEEECCCHHHHHHHHHHHHcCCCcEEEECCCeecccccccccccchhhc---CChHHHHHHHHHH
Confidence            3688999988 99999999999999999999999999999999999999999999999999999   9999999999999


Q ss_pred             hhCCCCeEeEeeCCCCCCchhhcCCccEEEEcCCCHHHHHHHHHHHHhc----------cCCccEEEeeecCceEEEEEe
Q 020565           99 DFNPMVRVSVEKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKL----------SKRVAFYTVDCRDSCGEIFVD  168 (324)
Q Consensus        99 ~lnp~v~v~~~~~~~~~~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~----------~~~ip~i~~~~~G~~g~v~~d  168 (324)
                      ++||.++|+.+...+.+...++++++|+||+|+|+.++|.+||+.|+.+          ..++|+|++++.|+.|++++.
T Consensus       476 ~~np~~~v~~~~~~~~~~~~~~~~~~d~vv~~~d~~~~r~~in~~~~~~~~~~~g~~~~~~~~p~i~~~~~g~~G~~~~~  555 (805)
T 2nvu_B          476 DRVPNCNVVPHFNKIQDFNDTFYRQFHIIVCGLDSIIARRWINGMLISLLNYEDGVLDPSSIVPLIDGGTEGFKGNARVI  555 (805)
T ss_dssp             HHSTTCEEEEEESCGGGSCHHHHHTCSEEEECCSCHHHHHHHHHHHHHTCCEETTEECGGGCCCEEEEEEETTEEEEEEE
T ss_pred             HHCCCCEEEEEeccccccHHHHHhcCCEEEECCCCHHHHHHHHHHHHHHhhccccccccccCCcEEEeccccCceeEEEE
Confidence            9999999999998888766788999999999999999999999999872          138999999999999999987


Q ss_pred             cCceeeeecCccccccc-ccCC---CChHHhhccCcc---cCCCc-hhHHHHHHHHHHHHHHHhCCC---C-CCCCcccH
Q 020565          169 LQNHKYSKQKIEETIEC-QLRY---PSFEEAISVPWR---ALPRK-ASKLYFALRVLEQFEEAEGRS---P-GEISIADL  236 (324)
Q Consensus       169 ~~~~~~~~~~~~~~~~~-~~~f---~~~~e~l~~~~~---~~~~~-~~~~~~~~~~l~~f~~~~~~~---p-~~~~~~d~  236 (324)
                      ++..          .+| +|.+   |+-.   ..++.   +.++. .+++..+...++  ...+...   + ...+.++.
T Consensus       556 ~p~~----------~~c~~c~~~~~p~~~---~~~~c~~~~~~~~~~~~i~~a~~~~~--~~~~~~~~~~~~d~~~~~~~  620 (805)
T 2nvu_B          556 LPGM----------TACIECTLELYPPQV---NFPMCTIASMPRLPEHCIEYVRMLQW--PKEQPFGEGVPLDGDDPEHI  620 (805)
T ss_dssp             CTTT----------SCCTTTSGGGSCCCC---CCCHHHHHHCCCSHHHHHHHHHHTHH--HHHCTTSTTCCCCTTCHHHH
T ss_pred             CCCC----------CCceeccCCCCCCCC---CCCccccCCCCCCccHHHHHHHHhhc--ccccCCCCcccCCCCCHHHH
Confidence            6531          133 3322   2211   11211   12221 122333444443  3333221   1 11123445


Q ss_pred             HHHHHHHHHHHHHcCCCCCCCCHHHHHHHHh-cCCcccchhHHHHHHHHHHHHHHHhcCCCcccceEEEeccCCc-eeEE
Q 020565          237 PAVLKLKKELCEANALNASHVTDSLLERLII-GTREFTPVCAVVGGILGQEVIKAISCKGEPLKNFFFFDIMDGK-GVVE  314 (324)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~l~p~~av~Ggi~aqEviK~itg~~~pl~~~~~~D~~~~~-~~~~  314 (324)
                      +.+.+.+++.|...|+.  .++..++..++. ..+.++|++|++||++|+|+||+|+|.+.|++|+++||+.++. ...+
T Consensus       621 ~~~~~~~~~~~~~~gi~--~~~~~~~~~~~~~i~p~i~~~~aiig~~~a~e~ik~l~~~~~~l~~~~~~~~~~~~~~~~~  698 (805)
T 2nvu_B          621 QWIFQKSLERASQYNIR--GVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFKIATSAYIPLNNYLVFNDVDGLYTYTF  698 (805)
T ss_dssp             HHHHHHHHHHHHHTTCC--CCCHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHHHHHCSSCCCCSEEEEECSBSCEEEEE
T ss_pred             HHHHHHHHHHHHHhCCC--CcCHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHhccccccCceEEecCCCCcccccc
Confidence            66677788889999984  467778888888 8899999999999999999999999999999999999999887 3456


Q ss_pred             ecCC
Q 020565          315 DVSS  318 (324)
Q Consensus       315 ~~~~  318 (324)
                      .+.+
T Consensus       699 ~~~~  702 (805)
T 2nvu_B          699 EAER  702 (805)
T ss_dssp             CCCC
T ss_pred             cCCC
Confidence            6654

>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A

Probab=100.00  E-value=1.9e-35  Score=292.74  Aligned_cols=149  Identities=19%  Similarity=0.319  Sum_probs=140.6

Q ss_pred             HHHhhhHHHHHHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHH
Q 020565           17 QIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDS   96 (324)
Q Consensus        17 qi~l~g~~~q~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~   96 (324)
                      |+++||.++|++|++++|+|||+||+||+++++|+++|||+|+|+|.|.|+.+||+|||+|+.+|+   |++||++++++
T Consensus         3 qi~l~G~e~Q~kL~~s~VlVVGaGGLGsevak~La~aGVG~ItlvD~D~Ve~SNLnRQflf~~~dV---Gk~KAeaaa~~   79 (640)
T 1y8q_B            3 LSRGLPRELAEAVAGGRVLVVGAGGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLNRQFLFQKKHV---GRSKAQVAKES   79 (640)
T ss_dssp             ---CCCHHHHHHHHHCEEEEECCSHHHHHHHHHHHHHTCCEEEEEECCBCCGGGGGTCTTCCGGGT---TSBHHHHHHHH
T ss_pred             hhhhcCHHHHHHHhcCeEEEECcCHHHHHHHHHHHHcCCCeEEEecCCEEChhhcCCCcCCChhHc---ChHHHHHHHHH
Confidence            899999999999999999999999999999999999999999999999999999999999999999   99999999999


Q ss_pred             HHhhCCCCeEeEeeCCCCC--CchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEeeecCceEEEEEecC
Q 020565           97 LKDFNPMVRVSVEKGDLSS--LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFVDLQ  170 (324)
Q Consensus        97 l~~lnp~v~v~~~~~~~~~--~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~~~~G~~g~v~~d~~  170 (324)
                      |+++||.++|+.+...+.+  ...++++++|+||+|+|+.+.+.++|++|++  +++|+|.+++.|+.|++++.++
T Consensus        80 L~~iNP~v~V~a~~~~i~~~~~~~~~~~~~DlVvda~Dn~~aR~~ln~~c~~--~~iPlI~~g~~G~~G~v~vi~p  153 (640)
T 1y8q_B           80 VLQFYPKANIVAYHDSIMNPDYNVEFFRQFILVMNALDNRAARNHVNRMCLA--ADVPLIESGTAGYLGQVTTIKK  153 (640)
T ss_dssp             HHTTCTTCEEEEEESCTTSTTSCHHHHTTCSEEEECCSCHHHHHHHHHHHHH--HTCCEEEEEEETTEEEEEEECT
T ss_pred             HHHHCCCCeEEEEecccchhhhhHhhhcCCCEEEECCCCHHHHHHHHHHHHH--cCCCEEEEEEecccceEEEECC
Confidence            9999999999999988864  3468899999999999999999999999999  9999999999999999998875

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=100.00  E-value=1.1e-36  Score=281.34  Aligned_cols=230  Identities=13%  Similarity=0.117  Sum_probs=184.0

Q ss_pred             HHHHhhhHHHHHHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHH
Q 020565           16 RQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCD   95 (324)
Q Consensus        16 Rqi~l~g~~~q~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~   95 (324)
                      -..|+|+..++++|++++|+|+|+||+||+++++|+++|||+|+|+|.|.|+.+|++||++++.+|+   |++|++++++
T Consensus        19 m~wRll~~~g~~kL~~~~VlIvGaGGlGs~va~~La~aGVg~ItlvD~D~Ve~SNL~RQ~l~~~~di---G~~Ka~aaa~   95 (340)
T 3rui_A           19 MKWRILPDLNLDIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDC---GKPKAELAAA   95 (340)
T ss_dssp             HHHHTCTTCCHHHHHTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCBCCTTSTTTSTTCCGGGT---TSBHHHHHHH
T ss_pred             HHHhhcchhhHHHHhCCEEEEECCCHHHHHHHHHHHHcCCCEEEEecCCEeccccccccccCChhhc---ChHHHHHHHH
Confidence            3456688888999999999999999999999999999999999999999999999999999999999   9999999999


Q ss_pred             HHHhhCCCCeEeEeeCCCC----------------CCchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEeeec
Q 020565           96 SLKDFNPMVRVSVEKGDLS----------------SLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCR  159 (324)
Q Consensus        96 ~l~~lnp~v~v~~~~~~~~----------------~~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~~~~  159 (324)
                      +|+++||.++++.+...+.                +...++++++|+||+|+|++++|..+|++|++  +++|+|+++ .
T Consensus        96 ~L~~inP~v~v~~~~~~i~~~g~~~~~~~~~~~~~~~l~~~l~~~DlVvd~tDn~~tR~lin~~c~~--~~~plI~aa-~  172 (340)
T 3rui_A           96 SLKRIFPLMDATGVKLSIPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFLLVDSRESRWLPSLLSNI--ENKTVINAA-L  172 (340)
T ss_dssp             HHHHHCTTCEEEEECCCCCCTTSCCSCHHHHHHHHHHHHHHHHHCSEEEECCSSTGGGHHHHHHHHH--TTCEEEEEE-E
T ss_pred             HHHHhCCCCEEEEEeccccccCcccchhhhhcCCHHHHHhhhccCCEEEecCCCHHHHHHHHHHHHH--cCCcEEEee-e
Confidence            9999999999999875541                12356788999999999999999999999999  999999976 9


Q ss_pred             CceEEEEEecCc-eeeeecCccccccc-ccCCCChHHhhccCcccCCCchhHHHHHHHHHHHHHHHhCCCCCCCCcccHH
Q 020565          160 DSCGEIFVDLQN-HKYSKQKIEETIEC-QLRYPSFEEAISVPWRALPRKASKLYFALRVLEQFEEAEGRSPGEISIADLP  237 (324)
Q Consensus       160 G~~g~v~~d~~~-~~~~~~~~~~~~~~-~~~f~~~~e~l~~~~~~~~~~~~~~~~~~~~l~~f~~~~~~~p~~~~~~d~~  237 (324)
                      |+.|++.+..|. +...    ....+| .|.|+..                                   |.. +..+- 
T Consensus       173 G~~G~l~v~~g~~~~~~----~~~~~Cy~C~~~~~-----------------------------------p~~-~~~~~-  211 (340)
T 3rui_A          173 GFDSYLVMRHGNRDEQS----SKQLGCYFCHDVVA-----------------------------------PTD-SLTDR-  211 (340)
T ss_dssp             CSSEEEEEECCCCCSSC----CCCBCCGGGGSSSC-----------------------------------CCC-CTTTC-
T ss_pred             cceEEEEEeecccccCC----CCCCCeeeeCCCCC-----------------------------------Ccc-ccccc-
Confidence            999999875442 1100    112345 4443211                                   100 00000 


Q ss_pred             HHHHHHHHHHHHcCCCCCCCCHHHHHHHHhcCCcccchhHHHHHHHHHHHHHHHhcCCCcc-----cc-e-EEEeccCCc
Q 020565          238 AVLKLKKELCEANALNASHVTDSLLERLIIGTREFTPVCAVVGGILGQEVIKAISCKGEPL-----KN-F-FFFDIMDGK  310 (324)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~p~~av~Ggi~aqEviK~itg~~~pl-----~~-~-~~~D~~~~~  310 (324)
                      .    ..+.|                      +.++|+.+++|+++|+|+||+|+|.+.|.     -+ + +.||+..+.
T Consensus       212 t----~~~~c----------------------~v~~p~vg~igs~qA~E~lk~l~~~~~~~~~~~~~G~l~~~~d~~~~~  265 (340)
T 3rui_A          212 T----LDQMS----------------------TVTRPGVAMMASSLAVELMTSLLQTKYSGSETTVLGDIPHQIRGFLHN  265 (340)
T ss_dssp             C----CGGGG----------------------GCSCHHHHHHHHHHHHHHHHHHTSCCCTTSSEETTEECCSEEEEETTT
T ss_pred             c----cCCCc----------------------ceecchHHHHHHHHHHHHHHHHhCCCCCccccCccCcccEEEecCcCC
Confidence            0    00011                      13999999999999999999999988765     23 3 899999999


Q ss_pred             eeEEecCC
Q 020565          311 GVVEDVSS  318 (324)
Q Consensus       311 ~~~~~~~~  318 (324)
                      ...+.+.+
T Consensus       266 f~~~~l~~  273 (340)
T 3rui_A          266 FSILKLET  273 (340)
T ss_dssp             TEEEEECC
T ss_pred             ceEEEecC
Confidence            99999875

>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.5e-35  Score=306.23  Aligned_cols=161  Identities=22%  Similarity=0.423  Sum_probs=150.2

Q ss_pred             CCCHHH----HHHhHHHHHhhhHHHHHHHhcCcEEEEcCchhHHHHHHHHHHhCC-----CcEEEEcCCccccccCCCCc
Q 020565            5 ELTEQE----TALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGV-----GSLTLMDDRVVTEEAWSANF   75 (324)
Q Consensus         5 ~l~~~e----~~ry~Rqi~l~g~~~q~~l~~~~VliiG~g~lGsei~k~L~~~Gv-----~~i~lvD~d~v~~~nl~r~~   75 (324)
                      .+++++    .+||+||+++||.++|++|++++|+|||+||+||+++++|+++||     |+|+|+|.|.|+.+||+|||
T Consensus       395 ~~~~~~~~~~~~Ry~rq~~l~G~~~q~kL~~~~VlvVGaGGlGsevlk~La~~Gv~~g~~G~i~lvD~D~Ve~SNLnRQ~  474 (1015)
T 3cmm_A          395 PRNEKTTQPVNSRYDNQIAVFGLDFQKKIANSKVFLVGSGAIGCEMLKNWALLGLGSGSDGYIVVTDNDSIEKSNLNRQF  474 (1015)
T ss_dssp             CCSTTTTSCCSSTTHHHHHHHCHHHHHHHHTCEEEEECCSHHHHHHHHHHHHHTTTCSTTCEEEEECCCBCCGGGTTTCT
T ss_pred             CCChhhccchhhhhhhHHHhcCHHHHHHHhcCeEEEEecCHHHHHHHHHHHHcCcCcCCCCeEEEEeCCEeccccccccc
Confidence            355555    579999999999999999999999999999999999999999999     99999999999999999999


Q ss_pred             ccCCCCcccCCccHHHHHHHHHHhhCCCC--eEeEeeCCCCCC-----chhhcCCccEEEEcCCCHHHHHHHHHHHHhcc
Q 020565           76 LIPPDENVYGGKTIAEVCCDSLKDFNPMV--RVSVEKGDLSSL-----DGEFYDKFDVVVVSCCSVTTKKLINEKCRKLS  148 (324)
Q Consensus        76 l~~~~di~~~G~~ka~~~~~~l~~lnp~v--~v~~~~~~~~~~-----~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~  148 (324)
                      +|+.+|+   |++|+++++++++++||.+  +|+.+...+...     ..++++++|+||+|.|+.++|.++|+.|+.  
T Consensus       475 lf~~~dv---G~~Ka~~aa~~l~~iNP~v~~~v~~~~~~i~~~~~~~~~~~~~~~~D~Vi~a~Dn~~aR~~ln~~c~~--  549 (1015)
T 3cmm_A          475 LFRPKDV---GKNKSEVAAEAVCAMNPDLKGKINAKIDKVGPETEEIFNDSFWESLDFVTNALDNVDARTYVDRRCVF--  549 (1015)
T ss_dssp             TCCGGGT---TSBHHHHHHHHHHHHCGGGTTTEEEECCCCSGGGTTTSCHHHHHHCSEEEECCSSHHHHHHHHHHHHH--
T ss_pred             cCChhhC---CCHHHHHHHHHHHHHCCCCcceEEEEecccCchhhhhccHhhhccCCEEEECCCCHHHHHHHHHHHHH--
Confidence            9999999   9999999999999999999  999998888742     257788999999999999999999999999  


Q ss_pred             CCccEEEeeecCceEEEEEecC
Q 020565          149 KRVAFYTVDCRDSCGEIFVDLQ  170 (324)
Q Consensus       149 ~~ip~i~~~~~G~~g~v~~d~~  170 (324)
                      .++|+|.+++.|+.|++.+.++
T Consensus       550 ~~~Pli~~g~~G~~G~v~v~~p  571 (1015)
T 3cmm_A          550 YRKPLLESGTLGTKGNTQVIIP  571 (1015)
T ss_dssp             HTCCEEEEEEETTEEEEEEECT
T ss_pred             cCCcEEEeCCCccccceEEEeC
Confidence            9999999999999999876654

>4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A

Probab=100.00  E-value=7.2e-36  Score=292.55  Aligned_cols=240  Identities=14%  Similarity=0.119  Sum_probs=190.9

Q ss_pred             CCHHHHHHhHHHH-------HhhhHHHHHHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccC
Q 020565            6 LTEQETALYDRQI-------RVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIP   78 (324)
Q Consensus         6 l~~~e~~ry~Rqi-------~l~g~~~q~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~   78 (324)
                      +++.+..++++++       |+|+..++++|++++|+|||+||+||+++++|+++|||+|+|+|+|.|+.+|++||++++
T Consensus       294 ~dp~~la~~~~~Lnlklm~wRllp~~g~ekL~~arVLIVGaGGLGs~vA~~La~aGVG~ItLvD~D~Ve~SNL~RQ~L~~  373 (615)
T 4gsl_A          294 LDPLKIADQSVDLNLKLMKWRILPDLNLDIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYN  373 (615)
T ss_dssp             HCHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCBCCTTGGGTSTTCC
T ss_pred             CCHHHHHhhhhhhhhHHHHHhhcchhhHHHHhCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCCCcccCcccccCCC
Confidence            4566777777777       567888899999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcccCCccHHHHHHHHHHhhCCCCeEeEeeCCC---------------C-CCchhhcCCccEEEEcCCCHHHHHHHHH
Q 020565           79 PDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDL---------------S-SLDGEFYDKFDVVVVSCCSVTTKKLINE  142 (324)
Q Consensus        79 ~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~~~~---------------~-~~~~~~~~~~diVi~~~~~~~~~~~l~~  142 (324)
                      .+|+   |++||++++++|+++||.++++.+...+               + +...++++++|+||+|+|+.++|..+|+
T Consensus       374 ~~dI---G~~KAeaaa~~L~~iNP~V~v~~~~~~Ipm~gh~v~~e~~~~l~~~~l~~ll~~~DlVvd~tDn~~tR~~ln~  450 (615)
T 4gsl_A          374 FEDC---GKPKAELAAASLKRIFPLMDATGVKLSIPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFLLVDSRESRWLPSL  450 (615)
T ss_dssp             GGGT---TSBHHHHHHHHHHHHCTTCEEEEECCCCCCTTCCCSCHHHHHHHHHHHHHHHHHCSEEEECCSSGGGTHHHHH
T ss_pred             hhhc---ChHHHHHHHHHHHhhCCCcEEEEeeccccccCccccchhhhcCCHHHHHHHhhcCCEEEecCCCHHHHHHHHH
Confidence            9999   9999999999999999999999987544               1 1235678899999999999999999999


Q ss_pred             HHHhccCCccEEEeeecCceEEEEEecCc-eeeeecCccccccc-ccCCCChHHhhccCcccCCCchhHHHHHHHHHHHH
Q 020565          143 KCRKLSKRVAFYTVDCRDSCGEIFVDLQN-HKYSKQKIEETIEC-QLRYPSFEEAISVPWRALPRKASKLYFALRVLEQF  220 (324)
Q Consensus       143 ~~~~~~~~ip~i~~~~~G~~g~v~~d~~~-~~~~~~~~~~~~~~-~~~f~~~~e~l~~~~~~~~~~~~~~~~~~~~l~~f  220 (324)
                      +|++  +++|+|.++ .|+.|++.+..|. +...    ....+| .|.++..                            
T Consensus       451 ~c~~--~~~PlI~aa-lG~~Gql~v~~g~~~~~~----~~~~~CY~Cl~~~~----------------------------  495 (615)
T 4gsl_A          451 LSNI--ENKTVINAA-LGFDSYLVMRHGNRDEQS----SKQLGCYFCHDVVA----------------------------  495 (615)
T ss_dssp             HHHH--TTCEEEEEE-ECSSEEEEEECCC----------CCCCCTTTSCSSC----------------------------
T ss_pred             HHHH--cCCeEEEEE-ccceeEEEEeecccccCC----CCCCCceeeCCCCC----------------------------
Confidence            9999  999999975 9999999875542 1111    112355 4444311                            


Q ss_pred             HHHhCCCCCCCCcccHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhcCCcccchhHHHHHHHHHHHHHHHhcCCCcc--
Q 020565          221 EEAEGRSPGEISIADLPAVLKLKKELCEANALNASHVTDSLLERLIIGTREFTPVCAVVGGILGQEVIKAISCKGEPL--  298 (324)
Q Consensus       221 ~~~~~~~p~~~~~~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~p~~av~Ggi~aqEviK~itg~~~pl--  298 (324)
                             |.. +..+ ..    ..+.                     +. .++|+.+++|+++|+|+||+|+|.+.+.  
T Consensus       496 -------P~~-~~~~-rt----l~~~---------------------C~-Vl~P~vgiigs~qA~EaLk~Ll~~g~~~~~  540 (615)
T 4gsl_A          496 -------PTD-SLTD-RT----LDQM---------------------CT-VTRPGVAMMASSLAVELMTSLLQTKYSGSE  540 (615)
T ss_dssp             -------TTS-CTTT-TT----TTCT---------------------TC-CCCHHHHHHHHHHHHHHHHHHHSCCCTTSS
T ss_pred             -------Ccc-cccc-cc----cccC---------------------cc-eecchHHHHHHHHHHHHHHHHhCCCCcccC
Confidence                   100 0000 00    0000                     11 3999999999999999999999988664  


Q ss_pred             ---cc-e-EEEeccCCceeEEecCC
Q 020565          299 ---KN-F-FFFDIMDGKGVVEDVSS  318 (324)
Q Consensus       299 ---~~-~-~~~D~~~~~~~~~~~~~  318 (324)
                         .+ . +.||+..+....+.+.+
T Consensus       541 ~~~~G~l~~~~dg~~~~f~~~~l~~  565 (615)
T 4gsl_A          541 TTVLGDIPHQIRGFLHNFSILKLET  565 (615)
T ss_dssp             EETTEECCSEEEEETTTTEEEEECC
T ss_pred             cCcCCCCcEEEeccCCcceEEeccC
Confidence               34 3 79999999999988885

>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A

Probab=100.00  E-value=1.8e-35  Score=289.81  Aligned_cols=240  Identities=13%  Similarity=0.115  Sum_probs=186.1

Q ss_pred             CCHHHHHHhHHHHHh----h---hHHHHHHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccC
Q 020565            6 LTEQETALYDRQIRV----W---GADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIP   78 (324)
Q Consensus         6 l~~~e~~ry~Rqi~l----~---g~~~q~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~   78 (324)
                      +++.+..+|+||+++    |   +..+|++|++++|+|+|+||+||+++++|+++|||+|+|+|.|.|+.+||+||++++
T Consensus       295 l~~~~la~~~~~lnL~lmrwrll~~~gq~kL~~~kVLIVGaGGLGs~va~~La~aGVG~ItLvD~D~Ve~SNL~RQ~L~~  374 (598)
T 3vh1_A          295 LDPLKIADQSVDLNLKLMKWRILPDLNLDIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYN  374 (598)
T ss_dssp             HCHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHTCEEEEECCSHHHHHHHHHHHTTTCCEEEEECCSBCCTTSTTTSTTCC
T ss_pred             cCHHHHHHHHHhhhhhhhhhhccchhhHHHHhCCeEEEECCCHHHHHHHHHHHHcCCCEEEEECCCcccccccccccccc
Confidence            678899999999998    4   556789999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcccCCccHHHHHHHHHHhhCCCCeEeEeeCCCC----------------CCchhhcCCccEEEEcCCCHHHHHHHHH
Q 020565           79 PDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLS----------------SLDGEFYDKFDVVVVSCCSVTTKKLINE  142 (324)
Q Consensus        79 ~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~~~~~----------------~~~~~~~~~~diVi~~~~~~~~~~~l~~  142 (324)
                      .+|+   |++||++++++|+++||.++++.+...+.                +...++++++|+||+|+|+.++|..+|+
T Consensus       375 ~~Dv---G~~KAeaaa~~L~~iNP~v~v~~~~~~I~~pgh~i~~~~~~~l~~~~l~~li~~~DvVvdatDn~~tR~lin~  451 (598)
T 3vh1_A          375 FEDC---GKPKAELAAASLKRIFPLMDATGVKLSIPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFLLVDSRESRWLPSL  451 (598)
T ss_dssp             STTC---SSBHHHHHHHHHHHHCTTCEEEEECCCCCCSSCCCCSHHHHHHHHHHHHHHHHHCSEEEECCSBGGGTHHHHH
T ss_pred             hhhc---CcHHHHHHHHHHHhHCCCcEEEEEeccccccCcccccccccccCHHHHHHHHhcCCEEEECCCCHHHHHHHHH
Confidence            9999   99999999999999999999999876641                1235678899999999999999999999


Q ss_pred             HHHhccCCccEEEeeecCceEEEEEecCceeeeecCccccccc-ccCCCChHHhhccCcccCCCchhHHHHHHHHHHHHH
Q 020565          143 KCRKLSKRVAFYTVDCRDSCGEIFVDLQNHKYSKQKIEETIEC-QLRYPSFEEAISVPWRALPRKASKLYFALRVLEQFE  221 (324)
Q Consensus       143 ~~~~~~~~ip~i~~~~~G~~g~v~~d~~~~~~~~~~~~~~~~~-~~~f~~~~e~l~~~~~~~~~~~~~~~~~~~~l~~f~  221 (324)
                      +|++  .++|+|.+ +.|+.|++++-.|...   .......+| .|.++..                             
T Consensus       452 ~c~~--~~~plI~a-a~G~~Gqv~v~~g~~p---~~~~~~~~Cy~Cl~~~~-----------------------------  496 (598)
T 3vh1_A          452 LSNI--ENKTVINA-ALGFDSYLVMRHGNRD---EQSSKQLGCYFCHDVVA-----------------------------  496 (598)
T ss_dssp             HHHH--TTCEEEEE-EECSSEEEEEEEC-----------CBCCTTTSCSSC-----------------------------
T ss_pred             HHHh--cCCCEEEE-EECCccEEEEEccCCC---ccCCCCCCceeecCccC-----------------------------
Confidence            9999  99999996 6999999875322100   000112245 4433211                             


Q ss_pred             HHhCCCCCCCCcccHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhcCCcccchhHHHHHHHHHHHHHHHhcCCC-----
Q 020565          222 EAEGRSPGEISIADLPAVLKLKKELCEANALNASHVTDSLLERLIIGTREFTPVCAVVGGILGQEVIKAISCKGE-----  296 (324)
Q Consensus       222 ~~~~~~p~~~~~~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~p~~av~Ggi~aqEviK~itg~~~-----  296 (324)
                            |... ..+         +.+ ...                + +.++|+.+++|+++|.|+||+|+|.+.     
T Consensus       497 ------p~~~-~~~---------~tl-d~~----------------C-~Vl~p~vgvigslqA~Ealk~Llg~~~ap~~~  542 (598)
T 3vh1_A          497 ------PTDS-LTD---------RTL-DQM----------------C-TVTRPGVAMMASSLAVELMTSLLQTKYSGSET  542 (598)
T ss_dssp             ------SSSC-TTT---------TTT-TBS----------------C-CCSCTHHHHHHHHHHHHHHHHHHSCCCSSSSE
T ss_pred             ------CCcc-ccc---------ccc-CCC----------------C-CccCcHHHHHHHHHHHHHHHHHhCCCcccccc
Confidence                  1000 000         000 000                0 138999999999999999999999987     


Q ss_pred             cccce--EEEeccCCceeEEecC
Q 020565          297 PLKNF--FFFDIMDGKGVVEDVS  317 (324)
Q Consensus       297 pl~~~--~~~D~~~~~~~~~~~~  317 (324)
                      |+.+.  ..+|+.........+.
T Consensus       543 ~~~g~l~~~l~g~l~~f~~~~l~  565 (598)
T 3vh1_A          543 TVLGDIPHQIRGFLHNFSILKLE  565 (598)
T ss_dssp             ETTEECCSEEEEETTTTEEEEEC
T ss_pred             cccccccceeecccccceeEecc
Confidence            54443  4678877766666654

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=97.97  E-value=3e-05  Score=59.38  Aligned_cols=92  Identities=14%  Similarity=0.100  Sum_probs=62.3

Q ss_pred             cCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEee
Q 020565           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEK  110 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~  110 (324)
                      ..+|+|+|+|++|..+++.|...|..+++++|.+                      ..+.+.+.      .+.+.+  ..
T Consensus         5 ~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~----------------------~~~~~~~~------~~~~~~--~~   54 (118)
T 3ic5_A            5 RWNICVVGAGKIGQMIAALLKTSSNYSVTVADHD----------------------LAALAVLN------RMGVAT--KQ   54 (118)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESC----------------------HHHHHHHH------TTTCEE--EE
T ss_pred             cCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCC----------------------HHHHHHHH------hCCCcE--EE
Confidence            4589999999999999999999996678888762                      22222221      223332  33


Q ss_pred             CCCCC--CchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEE
Q 020565          111 GDLSS--LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYT  155 (324)
Q Consensus       111 ~~~~~--~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~  155 (324)
                      .++.+  ...+.++++|+||.+.. ......+.+.|.+  .+++++.
T Consensus        55 ~d~~~~~~~~~~~~~~d~vi~~~~-~~~~~~~~~~~~~--~g~~~~~   98 (118)
T 3ic5_A           55 VDAKDEAGLAKALGGFDAVISAAP-FFLTPIIAKAAKA--AGAHYFD   98 (118)
T ss_dssp             CCTTCHHHHHHHTTTCSEEEECSC-GGGHHHHHHHHHH--TTCEEEC
T ss_pred             ecCCCHHHHHHHHcCCCEEEECCC-chhhHHHHHHHHH--hCCCEEE
Confidence            33332  23456789999999984 4445677788888  7877664

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=97.96  E-value=1.1e-05  Score=72.73  Aligned_cols=80  Identities=16%  Similarity=0.075  Sum_probs=64.3

Q ss_pred             HHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEe
Q 020565           28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS  107 (324)
Q Consensus        28 ~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~  107 (324)
                      .+++++|+|+|+||+|..++..|+..|++++++++.                      ...|++.+++.+....|.+.+.
T Consensus       124 ~l~~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R----------------------~~~~a~~la~~~~~~~~~~~i~  181 (283)
T 3jyo_A          124 NAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADL----------------------DTSRAQALADVINNAVGREAVV  181 (283)
T ss_dssp             TCCCSEEEEECCSHHHHHHHHHHHHTTCSEEEEECS----------------------SHHHHHHHHHHHHHHHTSCCEE
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEEC----------------------CHHHHHHHHHHHHhhcCCceEE
Confidence            367889999999999999999999999999999865                      4458888999999888877766


Q ss_pred             EeeCCCCCCchhhcCCccEEEEcCC
Q 020565          108 VEKGDLSSLDGEFYDKFDVVVVSCC  132 (324)
Q Consensus       108 ~~~~~~~~~~~~~~~~~diVi~~~~  132 (324)
                      ...  + +...+.+.++|+||+|+-
T Consensus       182 ~~~--~-~~l~~~l~~~DiVInaTp  203 (283)
T 3jyo_A          182 GVD--A-RGIEDVIAAADGVVNATP  203 (283)
T ss_dssp             EEC--S-TTHHHHHHHSSEEEECSS
T ss_pred             EcC--H-HHHHHHHhcCCEEEECCC
Confidence            543  1 122445678999999985

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=97.71  E-value=6e-05  Score=68.93  Aligned_cols=84  Identities=12%  Similarity=0.183  Sum_probs=60.5

Q ss_pred             HhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeE
Q 020565           29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV  108 (324)
Q Consensus        29 l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~  108 (324)
                      ++.++++|+|+||+|..++..|+..|++++++++.+.              +     -..|++.+++.+.+..+ +.+..
T Consensus       152 l~gk~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~~--------------~-----~~~~a~~la~~~~~~~~-~~~~~  211 (315)
T 3tnl_A          152 IIGKKMTICGAGGAATAICIQAALDGVKEISIFNRKD--------------D-----FYANAEKTVEKINSKTD-CKAQL  211 (315)
T ss_dssp             CTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSS--------------T-----THHHHHHHHHHHHHHSS-CEEEE
T ss_pred             ccCCEEEEECCChHHHHHHHHHHHCCCCEEEEEECCC--------------c-----hHHHHHHHHHHhhhhcC-CceEE
Confidence            5678999999999999999999999999999986520              0     14588888888887654 44444


Q ss_pred             eeCCCCCCchhhcCCccEEEEcCC
Q 020565          109 EKGDLSSLDGEFYDKFDVVVVSCC  132 (324)
Q Consensus       109 ~~~~~~~~~~~~~~~~diVi~~~~  132 (324)
                      ..-.-.+...+.+.++|+||.|+-
T Consensus       212 ~~~~~~~~l~~~l~~aDiIINaTp  235 (315)
T 3tnl_A          212 FDIEDHEQLRKEIAESVIFTNATG  235 (315)
T ss_dssp             EETTCHHHHHHHHHTCSEEEECSS
T ss_pred             eccchHHHHHhhhcCCCEEEECcc
Confidence            322100112345678999999874

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=97.67  E-value=0.00011  Score=63.74  Aligned_cols=95  Identities=14%  Similarity=0.156  Sum_probs=66.3

Q ss_pred             HHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEe
Q 020565           28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS  107 (324)
Q Consensus        28 ~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~  107 (324)
                      .|++.+|+|||.|.+|...++.|..+|. ++++++++.-.                     .   +. .+.+. .  .++
T Consensus        28 ~L~gk~VLVVGgG~va~~ka~~Ll~~GA-~VtVvap~~~~---------------------~---l~-~l~~~-~--~i~   78 (223)
T 3dfz_A           28 DLKGRSVLVVGGGTIATRRIKGFLQEGA-AITVVAPTVSA---------------------E---IN-EWEAK-G--QLR   78 (223)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHGGGCC-CEEEECSSCCH---------------------H---HH-HHHHT-T--SCE
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEECCCCCH---------------------H---HH-HHHHc-C--CcE
Confidence            4789999999999999999999999997 59999873110                     0   11 11111 1  233


Q ss_pred             EeeCCCCCCchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEee
Q 020565          108 VEKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVD  157 (324)
Q Consensus       108 ~~~~~~~~~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~~  157 (324)
                      .....   ...+.+.++|+||.++++.+....+.+.|+   .++|+-.+.
T Consensus        79 ~i~~~---~~~~dL~~adLVIaAT~d~~~N~~I~~~ak---~gi~VNvvD  122 (223)
T 3dfz_A           79 VKRKK---VGEEDLLNVFFIVVATNDQAVNKFVKQHIK---NDQLVNMAS  122 (223)
T ss_dssp             EECSC---CCGGGSSSCSEEEECCCCTHHHHHHHHHSC---TTCEEEC--
T ss_pred             EEECC---CCHhHhCCCCEEEECCCCHHHHHHHHHHHh---CCCEEEEeC
Confidence            33333   335667899999999999999888888884   477744333

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=97.63  E-value=0.00042  Score=55.04  Aligned_cols=87  Identities=15%  Similarity=0.127  Sum_probs=58.3

Q ss_pred             HhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeE
Q 020565           29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV  108 (324)
Q Consensus        29 l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~  108 (324)
                      ++..+|+|+|+|.+|..+++.|...|.. ++++|.+                      ..+++.    +++.  .+  ..
T Consensus         4 ~~~~~v~I~G~G~iG~~la~~L~~~g~~-V~~id~~----------------------~~~~~~----~~~~--~~--~~   52 (141)
T 3llv_A            4 NGRYEYIVIGSEAAGVGLVRELTAAGKK-VLAVDKS----------------------KEKIEL----LEDE--GF--DA   52 (141)
T ss_dssp             --CCSEEEECCSHHHHHHHHHHHHTTCC-EEEEESC----------------------HHHHHH----HHHT--TC--EE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCe-EEEEECC----------------------HHHHHH----HHHC--CC--cE
Confidence            3457899999999999999999999984 8888873                      112222    2221  12  22


Q ss_pred             eeCCCCCC---chhhcCCccEEEEcCCCHHHHHHHHHHHHh
Q 020565          109 EKGDLSSL---DGEFYDKFDVVVVSCCSVTTKKLINEKCRK  146 (324)
Q Consensus       109 ~~~~~~~~---~~~~~~~~diVi~~~~~~~~~~~l~~~~~~  146 (324)
                      ...+..+.   ....++++|+||.++.+.+....+...+++
T Consensus        53 ~~gd~~~~~~l~~~~~~~~d~vi~~~~~~~~n~~~~~~a~~   93 (141)
T 3llv_A           53 VIADPTDESFYRSLDLEGVSAVLITGSDDEFNLKILKALRS   93 (141)
T ss_dssp             EECCTTCHHHHHHSCCTTCSEEEECCSCHHHHHHHHHHHHH
T ss_pred             EECCCCCHHHHHhCCcccCCEEEEecCCHHHHHHHHHHHHH
Confidence            22333221   111256899999999988888888888888

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=97.51  E-value=0.00058  Score=55.17  Aligned_cols=91  Identities=13%  Similarity=0.172  Sum_probs=61.2

Q ss_pred             hcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEe
Q 020565           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVE  109 (324)
Q Consensus        30 ~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~  109 (324)
                      ++.+|+|+|+|.+|..+++.|...|.. ++++|.+.                     ..+++.+.+.   ....+.  ..
T Consensus         2 ~~~~vlI~G~G~vG~~la~~L~~~g~~-V~vid~~~---------------------~~~~~~~~~~---~~~~~~--~i   54 (153)
T 1id1_A            2 RKDHFIVCGHSILAINTILQLNQRGQN-VTVISNLP---------------------EDDIKQLEQR---LGDNAD--VI   54 (153)
T ss_dssp             CCSCEEEECCSHHHHHHHHHHHHTTCC-EEEEECCC---------------------HHHHHHHHHH---HCTTCE--EE
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCC-EEEEECCC---------------------hHHHHHHHHh---hcCCCe--EE
Confidence            467899999999999999999999975 89988731                     1122222211   112232  33


Q ss_pred             eCCCCC---CchhhcCCccEEEEcCCCHHHHHHHHHHHHhc
Q 020565          110 KGDLSS---LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKL  147 (324)
Q Consensus       110 ~~~~~~---~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~  147 (324)
                      ..+..+   .....++++|+||.++++.+....+...++++
T Consensus        55 ~gd~~~~~~l~~a~i~~ad~vi~~~~~d~~n~~~~~~a~~~   95 (153)
T 1id1_A           55 PGDSNDSSVLKKAGIDRCRAILALSDNDADNAFVVLSAKDM   95 (153)
T ss_dssp             ESCTTSHHHHHHHTTTTCSEEEECSSCHHHHHHHHHHHHHH
T ss_pred             EcCCCCHHHHHHcChhhCCEEEEecCChHHHHHHHHHHHHH
Confidence            333332   11233789999999999988888888888873

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=97.50  E-value=0.00026  Score=55.92  Aligned_cols=94  Identities=12%  Similarity=0.112  Sum_probs=56.9

Q ss_pred             HHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEe
Q 020565           28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS  107 (324)
Q Consensus        28 ~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~  107 (324)
                      +++..+|+|+|+|.+|..+++.|...|. +++++|.+.-....+..                          .  ...  
T Consensus         3 ~~~~~~v~I~G~G~iG~~~a~~l~~~g~-~v~~~d~~~~~~~~~~~--------------------------~--~~~--   51 (144)
T 2hmt_A            3 RIKNKQFAVIGLGRFGGSIVKELHRMGH-EVLAVDINEEKVNAYAS--------------------------Y--ATH--   51 (144)
T ss_dssp             ---CCSEEEECCSHHHHHHHHHHHHTTC-CCEEEESCHHHHHTTTT--------------------------T--CSE--
T ss_pred             CCcCCcEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH--------------------------h--CCE--
Confidence            4567789999999999999999999997 48888874322111111                          0  011  


Q ss_pred             EeeCCCCC--Cchh-hcCCccEEEEcCCCH-HHHHHHHHHHHhccCCccEE
Q 020565          108 VEKGDLSS--LDGE-FYDKFDVVVVSCCSV-TTKKLINEKCRKLSKRVAFY  154 (324)
Q Consensus       108 ~~~~~~~~--~~~~-~~~~~diVi~~~~~~-~~~~~l~~~~~~~~~~ip~i  154 (324)
                      ....+..+  ...+ .+.++|+||.++.+. .....+...+++  .+.+.+
T Consensus        52 ~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~~~~~~~~~~~~~~--~~~~~i  100 (144)
T 2hmt_A           52 AVIANATEENELLSLGIRNFEYVIVAIGANIQASTLTTLLLKE--LDIPNI  100 (144)
T ss_dssp             EEECCTTCHHHHHTTTGGGCSEEEECCCSCHHHHHHHHHHHHH--TTCSEE
T ss_pred             EEEeCCCCHHHHHhcCCCCCCEEEECCCCchHHHHHHHHHHHH--cCCCeE
Confidence            11111111  0111 256799999999864 666677778887  554433

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=97.47  E-value=0.00016  Score=65.96  Aligned_cols=83  Identities=13%  Similarity=0.183  Sum_probs=59.2

Q ss_pred             HhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeE
Q 020565           29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV  108 (324)
Q Consensus        29 l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~  108 (324)
                      +++++++|+|+||.|..++..|+..|++++++++.+              .+     ...|++.+++.+....+ ..+..
T Consensus       146 l~gk~~lVlGAGGaaraia~~L~~~G~~~v~v~nRt--------------~~-----~~~~a~~la~~~~~~~~-~~v~~  205 (312)
T 3t4e_A          146 MRGKTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRK--------------DD-----FFEKAVAFAKRVNENTD-CVVTV  205 (312)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECS--------------ST-----HHHHHHHHHHHHHHHSS-CEEEE
T ss_pred             cCCCEEEEECcCHHHHHHHHHHHHcCCCEEEEEECC--------------Cc-----hHHHHHHHHHHhhhccC-cceEE
Confidence            567899999999999999999999999999998651              00     14578888888877654 33333


Q ss_pred             eeCCCCCC--chhhcCCccEEEEcCCC
Q 020565          109 EKGDLSSL--DGEFYDKFDVVVVSCCS  133 (324)
Q Consensus       109 ~~~~~~~~--~~~~~~~~diVi~~~~~  133 (324)
                      ..  +.+.  ..+.+.++|+||.|+-.
T Consensus       206 ~~--~~~l~~~~~~l~~~DiIINaTp~  230 (312)
T 3t4e_A          206 TD--LADQHAFTEALASADILTNGTKV  230 (312)
T ss_dssp             EE--TTCHHHHHHHHHHCSEEEECSST
T ss_pred             ec--hHhhhhhHhhccCceEEEECCcC
Confidence            32  1111  13446689999998753

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=97.37  E-value=0.0014  Score=52.09  Aligned_cols=90  Identities=12%  Similarity=0.152  Sum_probs=57.9

Q ss_pred             cCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEee
Q 020565           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEK  110 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~  110 (324)
                      +.+|+|+|+|.+|..+++.|...|.. ++++|.+.                      .+++.    +++.  .+.  ...
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~~g~~-v~vid~~~----------------------~~~~~----~~~~--g~~--~i~   55 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLASDIP-LVVIETSR----------------------TRVDE----LRER--GVR--AVL   55 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCC-EEEEESCH----------------------HHHHH----HHHT--TCE--EEE
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCC-EEEEECCH----------------------HHHHH----HHHc--CCC--EEE
Confidence            46899999999999999999999985 99988732                      22222    2221  222  222


Q ss_pred             CCCCC---CchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCc
Q 020565          111 GDLSS---LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRV  151 (324)
Q Consensus       111 ~~~~~---~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~i  151 (324)
                      .+.+.   ....-++++|+||.++.+......+-..++++..++
T Consensus        56 gd~~~~~~l~~a~i~~ad~vi~~~~~~~~n~~~~~~a~~~~~~~   99 (140)
T 3fwz_A           56 GNAANEEIMQLAHLECAKWLILTIPNGYEAGEIVASARAKNPDI   99 (140)
T ss_dssp             SCTTSHHHHHHTTGGGCSEEEECCSCHHHHHHHHHHHHHHCSSS
T ss_pred             CCCCCHHHHHhcCcccCCEEEEECCChHHHHHHHHHHHHHCCCC
Confidence            23222   111235689999999988776666666676633333

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=97.37  E-value=0.0014  Score=53.04  Aligned_cols=91  Identities=14%  Similarity=0.067  Sum_probs=58.0

Q ss_pred             HHHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCe
Q 020565           26 QRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVR  105 (324)
Q Consensus        26 q~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~  105 (324)
                      -+++...+|+|+|+|.+|..+++.|...|. +++++|.+.-....+...       .   |                 ..
T Consensus        14 ~~~~~~~~v~IiG~G~iG~~la~~L~~~g~-~V~vid~~~~~~~~~~~~-------~---g-----------------~~   65 (155)
T 2g1u_A           14 SKKQKSKYIVIFGCGRLGSLIANLASSSGH-SVVVVDKNEYAFHRLNSE-------F---S-----------------GF   65 (155)
T ss_dssp             ---CCCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCGGGGGGSCTT-------C---C-----------------SE
T ss_pred             hcccCCCcEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHhc-------C---C-----------------Cc
Confidence            356778899999999999999999999997 699998754333222200       0   0                 11


Q ss_pred             EeEeeCCCCC--Cc-hhhcCCccEEEEcCCCHHHHHHHHHHHHh
Q 020565          106 VSVEKGDLSS--LD-GEFYDKFDVVVVSCCSVTTKKLINEKCRK  146 (324)
Q Consensus       106 v~~~~~~~~~--~~-~~~~~~~diVi~~~~~~~~~~~l~~~~~~  146 (324)
                        ....+...  .. ...+.++|+||.|+.+......+...++.
T Consensus        66 --~~~~d~~~~~~l~~~~~~~ad~Vi~~~~~~~~~~~~~~~~~~  107 (155)
T 2g1u_A           66 --TVVGDAAEFETLKECGMEKADMVFAFTNDDSTNFFISMNARY  107 (155)
T ss_dssp             --EEESCTTSHHHHHTTTGGGCSEEEECSSCHHHHHHHHHHHHH
T ss_pred             --EEEecCCCHHHHHHcCcccCCEEEEEeCCcHHHHHHHHHHHH
Confidence              11111111  00 11245799999999998877777777765

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.36  E-value=0.0014  Score=54.53  Aligned_cols=87  Identities=13%  Similarity=0.094  Sum_probs=57.4

Q ss_pred             HhcCcEEEEcCchhHHHHHHHHHHh-CCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEe
Q 020565           29 LSKSHILVCGMKGTVAEFCKNIVLA-GVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS  107 (324)
Q Consensus        29 l~~~~VliiG~g~lGsei~k~L~~~-Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~  107 (324)
                      +.+.+|+|+|+|.+|..+++.|... |.. ++++|.+.                      .|++.    +++..  +.  
T Consensus        37 ~~~~~v~IiG~G~~G~~~a~~L~~~~g~~-V~vid~~~----------------------~~~~~----~~~~g--~~--   85 (183)
T 3c85_A           37 PGHAQVLILGMGRIGTGAYDELRARYGKI-SLGIEIRE----------------------EAAQQ----HRSEG--RN--   85 (183)
T ss_dssp             CTTCSEEEECCSHHHHHHHHHHHHHHCSC-EEEEESCH----------------------HHHHH----HHHTT--CC--
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHhccCCe-EEEEECCH----------------------HHHHH----HHHCC--CC--
Confidence            4567999999999999999999999 974 88888722                      22222    22222  22  


Q ss_pred             EeeCCCCC--Cchhh--cCCccEEEEcCCCHHHHHHHHHHHHh
Q 020565          108 VEKGDLSS--LDGEF--YDKFDVVVVSCCSVTTKKLINEKCRK  146 (324)
Q Consensus       108 ~~~~~~~~--~~~~~--~~~~diVi~~~~~~~~~~~l~~~~~~  146 (324)
                      ....+..+  ...+.  ++++|+||.++.+......+-..+++
T Consensus        86 ~~~gd~~~~~~l~~~~~~~~ad~vi~~~~~~~~~~~~~~~~~~  128 (183)
T 3c85_A           86 VISGDATDPDFWERILDTGHVKLVLLAMPHHQGNQTALEQLQR  128 (183)
T ss_dssp             EEECCTTCHHHHHTBCSCCCCCEEEECCSSHHHHHHHHHHHHH
T ss_pred             EEEcCCCCHHHHHhccCCCCCCEEEEeCCChHHHHHHHHHHHH
Confidence            12222221  11222  67899999999887776666667777

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=97.35  E-value=0.00077  Score=52.91  Aligned_cols=85  Identities=13%  Similarity=0.132  Sum_probs=54.9

Q ss_pred             CcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEeeC
Q 020565           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKG  111 (324)
Q Consensus        32 ~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~~  111 (324)
                      .+|+|+|+|.+|..+++.|...|. +++++|.+.                      .+++.    +.+.. .+.  ....
T Consensus         5 m~i~IiG~G~iG~~~a~~L~~~g~-~v~~~d~~~----------------------~~~~~----~~~~~-~~~--~~~~   54 (140)
T 1lss_A            5 MYIIIAGIGRVGYTLAKSLSEKGH-DIVLIDIDK----------------------DICKK----ASAEI-DAL--VING   54 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCH----------------------HHHHH----HHHHC-SSE--EEES
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCH----------------------HHHHH----HHHhc-CcE--EEEc
Confidence            579999999999999999999996 488887621                      12221    22111 121  2222


Q ss_pred             CCCCC---chhhcCCccEEEEcCCCHHHHHHHHHHHHh
Q 020565          112 DLSSL---DGEFYDKFDVVVVSCCSVTTKKLINEKCRK  146 (324)
Q Consensus       112 ~~~~~---~~~~~~~~diVi~~~~~~~~~~~l~~~~~~  146 (324)
                      +....   ....++++|+||.++.+......+...++.
T Consensus        55 d~~~~~~l~~~~~~~~d~vi~~~~~~~~~~~~~~~~~~   92 (140)
T 1lss_A           55 DCTKIKTLEDAGIEDADMYIAVTGKEEVNLMSSLLAKS   92 (140)
T ss_dssp             CTTSHHHHHHTTTTTCSEEEECCSCHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHcCcccCCEEEEeeCCchHHHHHHHHHHH
Confidence            22211   112356899999999887776777777877

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=97.34  E-value=0.00059  Score=61.01  Aligned_cols=114  Identities=17%  Similarity=0.250  Sum_probs=69.4

Q ss_pred             HhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCcccc--ccCCCCcccCCCCcccCCccHHHHHHHHHHhh-CCC--
Q 020565           29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTE--EAWSANFLIPPDENVYGGKTIAEVCCDSLKDF-NPM--  103 (324)
Q Consensus        29 l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~--~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~l-np~--  103 (324)
                      |++.+|+|||+|.+|...++.|...|.. ++++|++.-..  ..+.  -+....|    |  ++.  -...+++ |+.  
T Consensus        11 l~~k~VLVVGgG~va~rka~~Ll~~Ga~-VtViap~~~~~l~~~~~--~l~~~~~----~--~~~--~~~~~~~~~~~~~   79 (274)
T 1kyq_A           11 LKDKRILLIGGGEVGLTRLYKLMPTGCK-LTLVSPDLHKSIIPKFG--KFIQNKD----Q--PDY--REDAKRFINPNWD   79 (274)
T ss_dssp             CTTCEEEEEEESHHHHHHHHHHGGGTCE-EEEEEEEECTTHHHHHC--GGGC-------------------CEEECTTCC
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHhCCCE-EEEEcCCCCcchhHHHH--HHHhccc----c--ccc--cchhhcccccccc
Confidence            6789999999999999999999999965 99999854211  0000  0110000    0  000  0000111 110  


Q ss_pred             ---CeE-eEeeCCCCCCchhhcC------CccEEEEcCCCHHHHHHHHHHHHhccC---CccEEEeee
Q 020565          104 ---VRV-SVEKGDLSSLDGEFYD------KFDVVVVSCCSVTTKKLINEKCRKLSK---RVAFYTVDC  158 (324)
Q Consensus       104 ---v~v-~~~~~~~~~~~~~~~~------~~diVi~~~~~~~~~~~l~~~~~~~~~---~ip~i~~~~  158 (324)
                         -.+ ......+   ..+.+.      ++|+||.++++.+....+...|++  .   ++|+-.+..
T Consensus        80 ~~~g~i~~~i~~~~---~~~dL~~l~~~~~adlViaat~d~~~n~~I~~~Ar~--~f~~~i~VNvvd~  142 (274)
T 1kyq_A           80 PTKNEIYEYIRSDF---KDEYLDLENENDAWYIIMTCIPDHPESARIYHLCKE--RFGKQQLVNVADK  142 (274)
T ss_dssp             TTSCCCSEEECSSC---CGGGGCCSSTTCCEEEEEECCSCHHHHHHHHHHHHH--HHCTTSEEEETTC
T ss_pred             cccCCeeEEEcCCC---CHHHHhhcccCCCeEEEEEcCCChHHHHHHHHHHHH--hcCCCcEEEECCC
Confidence               122 3333332   234455      899999999999999999999999  7   887744443

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=97.25  E-value=0.0023  Score=55.13  Aligned_cols=103  Identities=14%  Similarity=0.113  Sum_probs=61.5

Q ss_pred             HHHHHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCC
Q 020565           25 AQRRLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPM  103 (324)
Q Consensus        25 ~q~~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~  103 (324)
                      -+.+|++.+|+|.|+ |++|..+++.|+..|. ++++++.+.                      .+.+.    +.+.   
T Consensus        15 ~~~~l~~~~ilVtGatG~iG~~l~~~L~~~G~-~V~~~~R~~----------------------~~~~~----~~~~---   64 (236)
T 3e8x_A           15 ENLYFQGMRVLVVGANGKVARYLLSELKNKGH-EPVAMVRNE----------------------EQGPE----LRER---   64 (236)
T ss_dssp             ------CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSG----------------------GGHHH----HHHT---
T ss_pred             cccCcCCCeEEEECCCChHHHHHHHHHHhCCC-eEEEEECCh----------------------HHHHH----HHhC---
Confidence            356789999999997 8999999999999997 477776521                      11111    1111   


Q ss_pred             CeE-eEeeCCCCCCchhhcCCccEEEEcCCC-------------HHHHHHHHHHHHhccCCc-cEEEeeecC
Q 020565          104 VRV-SVEKGDLSSLDGEFYDKFDVVVVSCCS-------------VTTKKLINEKCRKLSKRV-AFYTVDCRD  160 (324)
Q Consensus       104 v~v-~~~~~~~~~~~~~~~~~~diVi~~~~~-------------~~~~~~l~~~~~~~~~~i-p~i~~~~~G  160 (324)
                       .+ +....++.+...+.+.+.|+||.+...             ......+-+.|++  .++ .+|+.++.|
T Consensus        65 -~~~~~~~~Dl~~~~~~~~~~~D~vi~~ag~~~~~~~~~~~~~n~~~~~~l~~a~~~--~~~~~iv~~SS~~  133 (236)
T 3e8x_A           65 -GASDIVVANLEEDFSHAFASIDAVVFAAGSGPHTGADKTILIDLWGAIKTIQEAEK--RGIKRFIMVSSVG  133 (236)
T ss_dssp             -TCSEEEECCTTSCCGGGGTTCSEEEECCCCCTTSCHHHHHHTTTHHHHHHHHHHHH--HTCCEEEEECCTT
T ss_pred             -CCceEEEcccHHHHHHHHcCCCEEEECCCCCCCCCccccchhhHHHHHHHHHHHHH--cCCCEEEEEecCC
Confidence             23 334444444445667899999988652             2223456677776  443 466666644

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=97.25  E-value=0.00057  Score=61.10  Aligned_cols=74  Identities=22%  Similarity=0.345  Sum_probs=53.9

Q ss_pred             HhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeE
Q 020565           29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV  108 (324)
Q Consensus        29 l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~  108 (324)
                      ++.++++|+|+||.|..++..|+..|+.++++++.                      ...|++.+++.+..  .  .+..
T Consensus       118 l~~k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R----------------------~~~~a~~la~~~~~--~--~~~~  171 (272)
T 3pwz_A          118 LRNRRVLLLGAGGAVRGALLPFLQAGPSELVIANR----------------------DMAKALALRNELDH--S--RLRI  171 (272)
T ss_dssp             CTTSEEEEECCSHHHHHHHHHHHHTCCSEEEEECS----------------------CHHHHHHHHHHHCC--T--TEEE
T ss_pred             ccCCEEEEECccHHHHHHHHHHHHcCCCEEEEEeC----------------------CHHHHHHHHHHhcc--C--CeeE
Confidence            46789999999999999999999999999999865                      34477777777654  1  2333


Q ss_pred             eeCCCCCCchhhcCCccEEEEcCCC
Q 020565          109 EKGDLSSLDGEFYDKFDVVVVSCCS  133 (324)
Q Consensus       109 ~~~~~~~~~~~~~~~~diVi~~~~~  133 (324)
                      .  .+.+.. .  .++|+||.|+-.
T Consensus       172 ~--~~~~l~-~--~~~DivInaTp~  191 (272)
T 3pwz_A          172 S--RYEALE-G--QSFDIVVNATSA  191 (272)
T ss_dssp             E--CSGGGT-T--CCCSEEEECSSG
T ss_pred             e--eHHHhc-c--cCCCEEEECCCC
Confidence            2  111111 1  689999999864

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=97.25  E-value=0.0011  Score=63.65  Aligned_cols=97  Identities=14%  Similarity=0.211  Sum_probs=69.8

Q ss_pred             HhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeE
Q 020565           29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV  108 (324)
Q Consensus        29 l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~  108 (324)
                      |++.+|+|+|.|.+|...++.|..+|. +++++|++.-.                            .++++...-.++.
T Consensus        10 l~~~~vlVvGgG~va~~k~~~L~~~ga-~V~vi~~~~~~----------------------------~~~~l~~~~~i~~   60 (457)
T 1pjq_A           10 LRDRDCLIVGGGDVAERKARLLLEAGA-RLTVNALTFIP----------------------------QFTVWANEGMLTL   60 (457)
T ss_dssp             CBTCEEEEECCSHHHHHHHHHHHHTTB-EEEEEESSCCH----------------------------HHHHHHTTTSCEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCcC-EEEEEcCCCCH----------------------------HHHHHHhcCCEEE
Confidence            678899999999999999999999996 59999873111                            0111111112334


Q ss_pred             eeCCCCCCchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEeeec
Q 020565          109 EKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCR  159 (324)
Q Consensus       109 ~~~~~~~~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~~~~  159 (324)
                      ....+   ..+.++++|+||.++++.+....+...|++  .++|+-.++--
T Consensus        61 ~~~~~---~~~~l~~~~lVi~at~~~~~n~~i~~~a~~--~~i~vn~~d~~  106 (457)
T 1pjq_A           61 VEGPF---DETLLDSCWLAIAATDDDTVNQRVSDAAES--RRIFCNVVDAP  106 (457)
T ss_dssp             EESSC---CGGGGTTCSEEEECCSCHHHHHHHHHHHHH--TTCEEEETTCT
T ss_pred             EECCC---CccccCCccEEEEcCCCHHHHHHHHHHHHH--cCCEEEECCCc
Confidence            43333   345677999999999999888899999999  99986444433

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=97.19  E-value=0.001  Score=62.90  Aligned_cols=99  Identities=15%  Similarity=0.181  Sum_probs=65.1

Q ss_pred             CcEEEEcCchhHHHHHHHHHHhC-C-CcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEe
Q 020565           32 SHILVCGMKGTVAEFCKNIVLAG-V-GSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVE  109 (324)
Q Consensus        32 ~~VliiG~g~lGsei~k~L~~~G-v-~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~  109 (324)
                      .+|+|+|+|++|..+++.|+..| + ..++++|.                      ...|++.+++.+....+ .++...
T Consensus         2 ~kVlIiGaGgiG~~ia~~L~~~g~~~~~V~v~~r----------------------~~~~~~~la~~l~~~~~-~~~~~~   58 (405)
T 4ina_A            2 AKVLQIGAGGVGGVVAHKMAMNREVFSHITLASR----------------------TLSKCQEIAQSIKAKGY-GEIDIT   58 (405)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTCTTTCCEEEEEES----------------------CHHHHHHHHHHHHHTTC-CCCEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCceEEEEEEC----------------------CHHHHHHHHHHhhhhcC-CceEEE
Confidence            47999999999999999999988 3 57888776                      44466666666654332 123333


Q ss_pred             eCCCCC--CchhhcCC--ccEEEEcCCCHHHHHHHHHHHHhccCCccEEEe
Q 020565          110 KGDLSS--LDGEFYDK--FDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTV  156 (324)
Q Consensus       110 ~~~~~~--~~~~~~~~--~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~  156 (324)
                      ..++.+  ...+.+++  .|+||.+..... ...+.+.|.+  .++.+++.
T Consensus        59 ~~D~~d~~~l~~~l~~~~~DvVin~ag~~~-~~~v~~a~l~--~g~~vvD~  106 (405)
T 4ina_A           59 TVDADSIEELVALINEVKPQIVLNIALPYQ-DLTIMEACLR--TGVPYLDT  106 (405)
T ss_dssp             ECCTTCHHHHHHHHHHHCCSEEEECSCGGG-HHHHHHHHHH--HTCCEEES
T ss_pred             EecCCCHHHHHHHHHhhCCCEEEECCCccc-ChHHHHHHHH--hCCCEEEe
Confidence            334432  22344544  788888876533 3456677777  77777754

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=97.15  E-value=0.00092  Score=60.05  Aligned_cols=74  Identities=19%  Similarity=0.307  Sum_probs=55.1

Q ss_pred             HhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeE
Q 020565           29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV  108 (324)
Q Consensus        29 l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~  108 (324)
                      ++.++++|+|+||.|..++..|+..|+.++++++.                      ...|++.+++.+....   .+..
T Consensus       124 l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R----------------------~~~~a~~la~~~~~~~---~~~~  178 (281)
T 3o8q_A          124 LKGATILLIGAGGAARGVLKPLLDQQPASITVTNR----------------------TFAKAEQLAELVAAYG---EVKA  178 (281)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTCCSEEEEEES----------------------SHHHHHHHHHHHGGGS---CEEE
T ss_pred             ccCCEEEEECchHHHHHHHHHHHhcCCCeEEEEEC----------------------CHHHHHHHHHHhhccC---CeeE
Confidence            46789999999999999999999999999999865                      4457777777776543   2222


Q ss_pred             eeCCCCCCchhhcCCccEEEEcCCC
Q 020565          109 EKGDLSSLDGEFYDKFDVVVVSCCS  133 (324)
Q Consensus       109 ~~~~~~~~~~~~~~~~diVi~~~~~  133 (324)
                      ..  +.    +.-.++|+||.|+..
T Consensus       179 ~~--~~----~l~~~aDiIInaTp~  197 (281)
T 3o8q_A          179 QA--FE----QLKQSYDVIINSTSA  197 (281)
T ss_dssp             EE--GG----GCCSCEEEEEECSCC
T ss_pred             ee--HH----HhcCCCCEEEEcCcC
Confidence            21  11    112689999999864

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=97.14  E-value=0.0017  Score=57.36  Aligned_cols=95  Identities=9%  Similarity=0.095  Sum_probs=59.9

Q ss_pred             HhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeE
Q 020565           29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV  108 (324)
Q Consensus        29 l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~  108 (324)
                      +...+|.|||+|.+|..++..|...|...++++|.                      ...+++.+.+.+   .  +.  .
T Consensus         8 ~~~m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~----------------------~~~~~~~~~~~~---g--~~--~   58 (266)
T 3d1l_A            8 IEDTPIVLIGAGNLATNLAKALYRKGFRIVQVYSR----------------------TEESARELAQKV---E--AE--Y   58 (266)
T ss_dssp             GGGCCEEEECCSHHHHHHHHHHHHHTCCEEEEECS----------------------SHHHHHHHHHHT---T--CE--E
T ss_pred             CCCCeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeC----------------------CHHHHHHHHHHc---C--Cc--e
Confidence            44568999999999999999999999765777765                      222333333221   1  21  1


Q ss_pred             eeCCCCCCchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEee
Q 020565          109 EKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVD  157 (324)
Q Consensus       109 ~~~~~~~~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~~  157 (324)
                      .     ....+.++++|+||.|+-+......+.++...++.+..+++..
T Consensus        59 ~-----~~~~~~~~~~Dvvi~av~~~~~~~v~~~l~~~~~~~~ivv~~s  102 (266)
T 3d1l_A           59 T-----TDLAEVNPYAKLYIVSLKDSAFAELLQGIVEGKREEALMVHTA  102 (266)
T ss_dssp             E-----SCGGGSCSCCSEEEECCCHHHHHHHHHHHHTTCCTTCEEEECC
T ss_pred             e-----CCHHHHhcCCCEEEEecCHHHHHHHHHHHHhhcCCCcEEEECC
Confidence            1     1223456789999999987665555555543322344555543

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=97.01  E-value=0.0006  Score=54.53  Aligned_cols=73  Identities=11%  Similarity=0.088  Sum_probs=51.9

Q ss_pred             HhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeE
Q 020565           29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV  108 (324)
Q Consensus        29 l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~  108 (324)
                      ....+|+|+|+|++|..+++.|...|+. ++++|.                      ...|++.+++.+.     ..+..
T Consensus        19 ~~~~~v~iiG~G~iG~~~a~~l~~~g~~-v~v~~r----------------------~~~~~~~~a~~~~-----~~~~~   70 (144)
T 3oj0_A           19 NGGNKILLVGNGMLASEIAPYFSYPQYK-VTVAGR----------------------NIDHVRAFAEKYE-----YEYVL   70 (144)
T ss_dssp             HCCCEEEEECCSHHHHHHGGGCCTTTCE-EEEEES----------------------CHHHHHHHHHHHT-----CEEEE
T ss_pred             ccCCEEEEECCCHHHHHHHHHHHhCCCE-EEEEcC----------------------CHHHHHHHHHHhC-----CceEe
Confidence            3488999999999999999999999988 999876                      3335554444443     22211


Q ss_pred             eeCCCCCCchhhcCCccEEEEcCCCH
Q 020565          109 EKGDLSSLDGEFYDKFDVVVVSCCSV  134 (324)
Q Consensus       109 ~~~~~~~~~~~~~~~~diVi~~~~~~  134 (324)
                           .+...+.+.++|+||.|+...
T Consensus        71 -----~~~~~~~~~~~Divi~at~~~   91 (144)
T 3oj0_A           71 -----INDIDSLIKNNDVIITATSSK   91 (144)
T ss_dssp             -----CSCHHHHHHTCSEEEECSCCS
T ss_pred             -----ecCHHHHhcCCCEEEEeCCCC
Confidence                 122345567899999998754

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=96.96  E-value=0.0055  Score=52.35  Aligned_cols=84  Identities=18%  Similarity=0.226  Sum_probs=57.3

Q ss_pred             cEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEeeCC
Q 020565           33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGD  112 (324)
Q Consensus        33 ~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~~~  112 (324)
                      +|+|+|+|.+|..+++.|...|.. ++++|.+                      ..+++.+.    +.. .+  .....+
T Consensus         2 ~iiIiG~G~~G~~la~~L~~~g~~-v~vid~~----------------------~~~~~~l~----~~~-~~--~~i~gd   51 (218)
T 3l4b_C            2 KVIIIGGETTAYYLARSMLSRKYG-VVIINKD----------------------RELCEEFA----KKL-KA--TIIHGD   51 (218)
T ss_dssp             CEEEECCHHHHHHHHHHHHHTTCC-EEEEESC----------------------HHHHHHHH----HHS-SS--EEEESC
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCe-EEEEECC----------------------HHHHHHHH----HHc-CC--eEEEcC
Confidence            799999999999999999999985 8898862                      22222222    111 12  233333


Q ss_pred             CCC---CchhhcCCccEEEEcCCCHHHHHHHHHHHHh
Q 020565          113 LSS---LDGEFYDKFDVVVVSCCSVTTKKLINEKCRK  146 (324)
Q Consensus       113 ~~~---~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~  146 (324)
                      ..+   .....++++|+||.++.+......+...+++
T Consensus        52 ~~~~~~l~~a~i~~ad~vi~~~~~d~~n~~~~~~a~~   88 (218)
T 3l4b_C           52 GSHKEILRDAEVSKNDVVVILTPRDEVNLFIAQLVMK   88 (218)
T ss_dssp             TTSHHHHHHHTCCTTCEEEECCSCHHHHHHHHHHHHH
T ss_pred             CCCHHHHHhcCcccCCEEEEecCCcHHHHHHHHHHHH
Confidence            332   1123467899999999998888777777775

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=96.93  E-value=0.002  Score=58.62  Aligned_cols=34  Identities=12%  Similarity=0.163  Sum_probs=30.7

Q ss_pred             cCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d   64 (324)
                      ..+|.|||+|.+|..++++|+..|...++++|.+
T Consensus        24 ~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~   57 (312)
T 3qsg_A           24 AMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAA   57 (312)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSS
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCCeEEEEcCC
Confidence            4689999999999999999999998679999885

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=96.93  E-value=0.00065  Score=61.50  Aligned_cols=76  Identities=13%  Similarity=0.156  Sum_probs=52.1

Q ss_pred             HhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeE
Q 020565           29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV  108 (324)
Q Consensus        29 l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~  108 (324)
                      ++.++|+|+|+|++|..++..|+..|+.+++++|.                      ...|++.+++.+....+  .+  
T Consensus       139 l~~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR----------------------~~~ka~~la~~~~~~~~--~~--  192 (297)
T 2egg_A          139 LDGKRILVIGAGGGARGIYFSLLSTAAERIDMANR----------------------TVEKAERLVREGDERRS--AY--  192 (297)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTCSEEEEECS----------------------SHHHHHHHHHHSCSSSC--CE--
T ss_pred             CCCCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeC----------------------CHHHHHHHHHHhhhccC--ce--
Confidence            56789999999999999999999999989999876                      33355555544432111  11  


Q ss_pred             eeCCCCCCchhhcCCccEEEEcCCC
Q 020565          109 EKGDLSSLDGEFYDKFDVVVVSCCS  133 (324)
Q Consensus       109 ~~~~~~~~~~~~~~~~diVi~~~~~  133 (324)
                      ..  + +...+.+.++|+||.|+..
T Consensus       193 ~~--~-~~~~~~~~~aDivIn~t~~  214 (297)
T 2egg_A          193 FS--L-AEAETRLAEYDIIINTTSV  214 (297)
T ss_dssp             EC--H-HHHHHTGGGCSEEEECSCT
T ss_pred             ee--H-HHHHhhhccCCEEEECCCC
Confidence            10  0 1123456789999998864

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=96.90  E-value=0.0025  Score=59.24  Aligned_cols=92  Identities=13%  Similarity=0.048  Sum_probs=58.7

Q ss_pred             hcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEe
Q 020565           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVE  109 (324)
Q Consensus        30 ~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~  109 (324)
                      ++.||+|+|+|.+|+.+++.|+..  ..++++|.                      ...++       .++.+.+..  .
T Consensus        15 ~~mkilvlGaG~vG~~~~~~L~~~--~~v~~~~~----------------------~~~~~-------~~~~~~~~~--~   61 (365)
T 3abi_A           15 RHMKVLILGAGNIGRAIAWDLKDE--FDVYIGDV----------------------NNENL-------EKVKEFATP--L   61 (365)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHTTT--SEEEEEES----------------------CHHHH-------HHHTTTSEE--E
T ss_pred             CccEEEEECCCHHHHHHHHHHhcC--CCeEEEEc----------------------CHHHH-------HHHhccCCc--E
Confidence            455799999999999999999653  45776654                      22222       223333322  2


Q ss_pred             eCCCCC--CchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEee
Q 020565          110 KGDLSS--LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVD  157 (324)
Q Consensus       110 ~~~~~~--~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~~  157 (324)
                      ..+..+  ...+.++++|+||.|.... ....+.+.|.+  .++.+++..
T Consensus        62 ~~d~~d~~~l~~~~~~~DvVi~~~p~~-~~~~v~~~~~~--~g~~yvD~s  108 (365)
T 3abi_A           62 KVDASNFDKLVEVMKEFELVIGALPGF-LGFKSIKAAIK--SKVDMVDVS  108 (365)
T ss_dssp             ECCTTCHHHHHHHHTTCSEEEECCCGG-GHHHHHHHHHH--HTCEEEECC
T ss_pred             EEecCCHHHHHHHHhCCCEEEEecCCc-ccchHHHHHHh--cCcceEeee
Confidence            223322  2356678999999988654 44567788888  777777654

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=96.90  E-value=0.0057  Score=55.22  Aligned_cols=114  Identities=15%  Similarity=0.059  Sum_probs=67.2

Q ss_pred             hcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeE-
Q 020565           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV-  108 (324)
Q Consensus        30 ~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~-  108 (324)
                      .+.||.+||+|-.|..+++||+.+|.. ++++|.+.-..+.+...           |-..++    .+.++-....+.. 
T Consensus         4 Ms~kIgfIGLG~MG~~mA~~L~~~G~~-V~v~dr~~~~~~~l~~~-----------G~~~~~----s~~e~~~~~dvvi~   67 (297)
T 4gbj_A            4 MSEKIAFLGLGNLGTPIAEILLEAGYE-LVVWNRTASKAEPLTKL-----------GATVVE----NAIDAITPGGIVFS   67 (297)
T ss_dssp             CCCEEEEECCSTTHHHHHHHHHHTTCE-EEEC-------CTTTTT-----------TCEECS----SGGGGCCTTCEEEE
T ss_pred             CCCcEEEEecHHHHHHHHHHHHHCCCe-EEEEeCCHHHHHHHHHc-----------CCeEeC----CHHHHHhcCCceee
Confidence            356899999999999999999999985 88888654443333221           211111    1122222222222 


Q ss_pred             -eeCC--CCC----CchhhcCCccEEEEcC-CCHHHHHHHHHHHHhccCCccEEEeeecCc
Q 020565          109 -EKGD--LSS----LDGEFYDKFDVVVVSC-CSVTTKKLINEKCRKLSKRVAFYTVDCRDS  161 (324)
Q Consensus       109 -~~~~--~~~----~~~~~~~~~diVi~~~-~~~~~~~~l~~~~~~~~~~ip~i~~~~~G~  161 (324)
                       ....  ..+    .....++.-++||+++ .++.+...+.+.+.+  +++-|+++.+.|.
T Consensus        68 ~l~~~~~~~~v~~~~~~~~~~~~~iiid~sT~~p~~~~~~~~~~~~--~g~~~ldapVsGg  126 (297)
T 4gbj_A           68 VLADDAAVEELFSMELVEKLGKDGVHVSMSTISPETSRQLAQVHEW--YGAHYVGAPIFAR  126 (297)
T ss_dssp             CCSSHHHHHHHSCHHHHHHHCTTCEEEECSCCCHHHHHHHHHHHHH--TTCEEEECCEECC
T ss_pred             eccchhhHHHHHHHHHHhhcCCCeEEEECCCCChHHHHHHHHHHHh--cCCceecCCcCCC
Confidence             1111  000    1122345566777765 578888899999999  9999999988774

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=96.87  E-value=0.005  Score=58.30  Aligned_cols=93  Identities=16%  Similarity=0.207  Sum_probs=63.4

Q ss_pred             cCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEee
Q 020565           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEK  110 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~  110 (324)
                      +.+|+|+|+|.+|..+++.|...|+. ++++|.|.-                      +++.    +++..  +  .++.
T Consensus         4 ~~~viIiG~Gr~G~~va~~L~~~g~~-vvvId~d~~----------------------~v~~----~~~~g--~--~vi~   52 (413)
T 3l9w_A            4 GMRVIIAGFGRFGQITGRLLLSSGVK-MVVLDHDPD----------------------HIET----LRKFG--M--KVFY   52 (413)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCC-EEEEECCHH----------------------HHHH----HHHTT--C--CCEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCC-EEEEECCHH----------------------HHHH----HHhCC--C--eEEE
Confidence            46899999999999999999999986 999987321                      2222    22211  1  2223


Q ss_pred             CCCCC---CchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEE
Q 020565          111 GDLSS---LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFY  154 (324)
Q Consensus       111 ~~~~~---~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i  154 (324)
                      .+.+.   ....-++.+|+||+++++......+-..++++..++++|
T Consensus        53 GDat~~~~L~~agi~~A~~viv~~~~~~~n~~i~~~ar~~~p~~~Ii   99 (413)
T 3l9w_A           53 GDATRMDLLESAGAAKAEVLINAIDDPQTNLQLTEMVKEHFPHLQII   99 (413)
T ss_dssp             SCTTCHHHHHHTTTTTCSEEEECCSSHHHHHHHHHHHHHHCTTCEEE
T ss_pred             cCCCCHHHHHhcCCCccCEEEECCCChHHHHHHHHHHHHhCCCCeEE
Confidence            33322   112236789999999999999889999998854444343

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=96.86  E-value=0.0035  Score=57.36  Aligned_cols=76  Identities=14%  Similarity=0.158  Sum_probs=53.2

Q ss_pred             HhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCC----CC
Q 020565           29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNP----MV  104 (324)
Q Consensus        29 l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp----~v  104 (324)
                      ++..+|.|+|+|.+|+.++..|+..|.++++++|-                      ...|++..+..|...++    ..
T Consensus         5 m~~~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di----------------------~~~~~~g~~~dl~~~~~~~~~~~   62 (324)
T 3gvi_A            5 MARNKIALIGSGMIGGTLAHLAGLKELGDVVLFDI----------------------AEGTPQGKGLDIAESSPVDGFDA   62 (324)
T ss_dssp             -CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECS----------------------SSSHHHHHHHHHHHHHHHHTCCC
T ss_pred             CcCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeC----------------------CchhHHHHHHHHhchhhhcCCCC
Confidence            56789999999999999999999999877999886                      22344444445554432    34


Q ss_pred             eEeEeeCCCCCCchhhcCCccEEEEcCC
Q 020565          105 RVSVEKGDLSSLDGEFYDKFDVVVVSCC  132 (324)
Q Consensus       105 ~v~~~~~~~~~~~~~~~~~~diVi~~~~  132 (324)
                      ++....    +  .+.++++|+||.+..
T Consensus        63 ~v~~t~----d--~~a~~~aDiVIiaag   84 (324)
T 3gvi_A           63 KFTGAN----D--YAAIEGADVVIVTAG   84 (324)
T ss_dssp             CEEEES----S--GGGGTTCSEEEECCS
T ss_pred             EEEEeC----C--HHHHCCCCEEEEccC
Confidence            444321    1  256789999999864

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=96.78  E-value=0.012  Score=53.61  Aligned_cols=112  Identities=15%  Similarity=0.165  Sum_probs=70.0

Q ss_pred             HHHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCC--
Q 020565           27 RRLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPM--  103 (324)
Q Consensus        27 ~~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~--  103 (324)
                      ..++..+|+|.|+ |.+|+.+++.|...|. +++.++...-                   +.   ....+.+....+.  
T Consensus        21 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~-------------------~~---~~~~~~~~~~~~~~~   77 (351)
T 3ruf_A           21 LIFSPKTWLITGVAGFIGSNLLEKLLKLNQ-VVIGLDNFST-------------------GH---QYNLDEVKTLVSTEQ   77 (351)
T ss_dssp             HHHSCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSS-------------------CC---HHHHHHHHHTSCHHH
T ss_pred             CCCCCCeEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCCC-------------------Cc---hhhhhhhhhcccccc
Confidence            4567899999996 8899999999999996 4777665211                   10   0111222222110  


Q ss_pred             -CeEeEeeCCCCC--CchhhcCCccEEEEcCCC--HH---------------HHHHHHHHHHhccCCc-cEEEeeecCce
Q 020565          104 -VRVSVEKGDLSS--LDGEFYDKFDVVVVSCCS--VT---------------TKKLINEKCRKLSKRV-AFYTVDCRDSC  162 (324)
Q Consensus       104 -v~v~~~~~~~~~--~~~~~~~~~diVi~~~~~--~~---------------~~~~l~~~~~~~~~~i-p~i~~~~~G~~  162 (324)
                       -.++....++.+  .....++++|+||.+...  ..               ....+-+.|++  .++ .||+.++.+.+
T Consensus        78 ~~~~~~~~~Dl~d~~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~--~~~~~~v~~SS~~vy  155 (351)
T 3ruf_A           78 WSRFCFIEGDIRDLTTCEQVMKGVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKN--AQVQSFTYAASSSTY  155 (351)
T ss_dssp             HTTEEEEECCTTCHHHHHHHTTTCSEEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHH--TTCSEEEEEEEGGGG
T ss_pred             CCceEEEEccCCCHHHHHHHhcCCCEEEECCccCCcchhhhCHHHHHHHHHHHHHHHHHHHHH--cCCCEEEEEecHHhc
Confidence             245555566654  235667899999988753  11               11345677877  665 68888887766


Q ss_pred             E
Q 020565          163 G  163 (324)
Q Consensus       163 g  163 (324)
                      |
T Consensus       156 g  156 (351)
T 3ruf_A          156 G  156 (351)
T ss_dssp             T
T ss_pred             C
Confidence            5

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=96.76  E-value=0.0026  Score=56.78  Aligned_cols=68  Identities=13%  Similarity=0.160  Sum_probs=50.1

Q ss_pred             hcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEe
Q 020565           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVE  109 (324)
Q Consensus        30 ~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~  109 (324)
                      ..++|+|+|+||.|..++..|...|+.++++++.                      ...|++.+++.+..     .+   
T Consensus       118 ~~~~vlvlGaGgaarav~~~L~~~G~~~i~v~nR----------------------t~~ka~~la~~~~~-----~~---  167 (271)
T 1npy_A          118 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYAR----------------------NVKTGQYLAALYGY-----AY---  167 (271)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECS----------------------CHHHHHHHHHHHTC-----EE---
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeC----------------------CHHHHHHHHHHcCC-----cc---
Confidence            3578999999999999999999999999999855                      33477776665531     11   


Q ss_pred             eCCCCCCchhhcCCccEEEEcCCC
Q 020565          110 KGDLSSLDGEFYDKFDVVVVSCCS  133 (324)
Q Consensus       110 ~~~~~~~~~~~~~~~diVi~~~~~  133 (324)
                      ...+     . ..++|+||.|+-.
T Consensus       168 ~~~~-----~-~~~~DivInaTp~  185 (271)
T 1npy_A          168 INSL-----E-NQQADILVNVTSI  185 (271)
T ss_dssp             ESCC-----T-TCCCSEEEECSST
T ss_pred             chhh-----h-cccCCEEEECCCC
Confidence            1111     1 3589999999864

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=96.76  E-value=0.005  Score=55.02  Aligned_cols=81  Identities=14%  Similarity=0.083  Sum_probs=52.3

Q ss_pred             hcCcEEEEcCchhHHHHHHHHHHhCC--CcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEe
Q 020565           30 SKSHILVCGMKGTVAEFCKNIVLAGV--GSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS  107 (324)
Q Consensus        30 ~~~~VliiG~g~lGsei~k~L~~~Gv--~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~  107 (324)
                      +..+|.|||+|.+|+.+++.|+..|.  .+++++|.                      ...+++.+.+.+     .+  .
T Consensus         2 ~~~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr----------------------~~~~~~~l~~~~-----gi--~   52 (280)
T 3tri_A            2 NTSNITFIGGGNMARNIVVGLIANGYDPNRICVTNR----------------------SLDKLDFFKEKC-----GV--H   52 (280)
T ss_dssp             CCSCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECS----------------------SSHHHHHHHHTT-----CC--E
T ss_pred             CCCEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeC----------------------CHHHHHHHHHHc-----CC--E
Confidence            45789999999999999999999996  26888776                      222333333221     12  1


Q ss_pred             EeeCCCCCCchhhcCCccEEEEcCCCHHHHHHHHHHH
Q 020565          108 VEKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKC  144 (324)
Q Consensus       108 ~~~~~~~~~~~~~~~~~diVi~~~~~~~~~~~l~~~~  144 (324)
                      ..     ....+.++++|+||.|.-+......+.++.
T Consensus        53 ~~-----~~~~~~~~~aDvVilav~p~~~~~vl~~l~   84 (280)
T 3tri_A           53 TT-----QDNRQGALNADVVVLAVKPHQIKMVCEELK   84 (280)
T ss_dssp             EE-----SCHHHHHSSCSEEEECSCGGGHHHHHHHHH
T ss_pred             Ee-----CChHHHHhcCCeEEEEeCHHHHHHHHHHHH
Confidence            11     123456778999999986544444444443

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=96.75  E-value=0.004  Score=53.78  Aligned_cols=85  Identities=18%  Similarity=0.227  Sum_probs=58.2

Q ss_pred             hcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEe
Q 020565           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVE  109 (324)
Q Consensus        30 ~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~  109 (324)
                      .+.+|+|+|+|.+|..+++.|...|.  ++++|.+.                      .+++    .+.   +.+  .+.
T Consensus         8 ~~~~viI~G~G~~G~~la~~L~~~g~--v~vid~~~----------------------~~~~----~~~---~~~--~~i   54 (234)
T 2aef_A            8 KSRHVVICGWSESTLECLRELRGSEV--FVLAEDEN----------------------VRKK----VLR---SGA--NFV   54 (234)
T ss_dssp             --CEEEEESCCHHHHHHHHHSTTSEE--EEEESCGG----------------------GHHH----HHH---TTC--EEE
T ss_pred             CCCEEEEECCChHHHHHHHHHHhCCe--EEEEECCH----------------------HHHH----HHh---cCC--eEE
Confidence            45689999999999999999999987  88887631                      1221    122   223  233


Q ss_pred             eCCCCCC---chhhcCCccEEEEcCCCHHHHHHHHHHHHhc
Q 020565          110 KGDLSSL---DGEFYDKFDVVVVSCCSVTTKKLINEKCRKL  147 (324)
Q Consensus       110 ~~~~~~~---~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~  147 (324)
                      ..+.++.   ....++++|.||.++.+.+....+...++++
T Consensus        55 ~gd~~~~~~l~~a~i~~ad~vi~~~~~d~~n~~~~~~a~~~   95 (234)
T 2aef_A           55 HGDPTRVSDLEKANVRGARAVIVDLESDSETIHCILGIRKI   95 (234)
T ss_dssp             ESCTTCHHHHHHTTCTTCSEEEECCSCHHHHHHHHHHHHHH
T ss_pred             EcCCCCHHHHHhcCcchhcEEEEcCCCcHHHHHHHHHHHHH
Confidence            3333321   1233789999999999888888888888883

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=96.66  E-value=0.0014  Score=59.58  Aligned_cols=131  Identities=11%  Similarity=0.014  Sum_probs=65.9

Q ss_pred             hHHHHHhhhHHHH--HHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHH
Q 020565           14 YDRQIRVWGADAQ--RRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAE   91 (324)
Q Consensus        14 y~Rqi~l~g~~~q--~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~   91 (324)
                      |+-|-+.|-....  ...+-.+|.|||+|.+|+.++++|+..|. .++++|.+.-....+...           |-..+.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~m~~I~iIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~-----------g~~~~~   69 (310)
T 3doj_A            2 GSSHHHHHHSSGLVPRGSHMMEVGFLGLGIMGKAMSMNLLKNGF-KVTVWNRTLSKCDELVEH-----------GASVCE   69 (310)
T ss_dssp             ----------------CCCSCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSGGGGHHHHHT-----------TCEECS
T ss_pred             CCcccccccccccCcccccCCEEEEECccHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHC-----------CCeEcC
Confidence            4444444333322  23444689999999999999999999997 599998865433332211           111011


Q ss_pred             HHHHHHHhhCCCCeEeEeeCC--CC------CCchhhcCCccEEEEcCC-CHHHHHHHHHHHHhccCCccEEEeeecC
Q 020565           92 VCCDSLKDFNPMVRVSVEKGD--LS------SLDGEFYDKFDVVVVSCC-SVTTKKLINEKCRKLSKRVAFYTVDCRD  160 (324)
Q Consensus        92 ~~~~~l~~lnp~v~v~~~~~~--~~------~~~~~~~~~~diVi~~~~-~~~~~~~l~~~~~~~~~~ip~i~~~~~G  160 (324)
                      ...+.+..  .++-+......  +.      ......+..-.+||+++. .+.....+.+.+.+  .++.|+.+...|
T Consensus        70 ~~~~~~~~--aDvvi~~vp~~~~~~~v~~~~~~l~~~l~~g~~vv~~st~~~~~~~~~~~~~~~--~g~~~v~~pv~g  143 (310)
T 3doj_A           70 SPAEVIKK--CKYTIAMLSDPCAALSVVFDKGGVLEQICEGKGYIDMSTVDAETSLKINEAITG--KGGRFVEGPVSG  143 (310)
T ss_dssp             SHHHHHHH--CSEEEECCSSHHHHHHHHHSTTCGGGGCCTTCEEEECSCCCHHHHHHHHHHHHH--TTCEEEECCEEC
T ss_pred             CHHHHHHh--CCEEEEEcCCHHHHHHHHhCchhhhhccCCCCEEEECCCCCHHHHHHHHHHHHH--cCCEEEeCCCCC
Confidence            11111221  23333332211  11      111123445567776654 56666777777777  777777655443

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=96.65  E-value=0.0043  Score=55.22  Aligned_cols=32  Identities=13%  Similarity=0.296  Sum_probs=30.1

Q ss_pred             cCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      .++|+|+|+||.|..++..|...| .++++++.
T Consensus       118 ~k~vlvlGaGGaaraia~~L~~~G-~~v~V~nR  149 (269)
T 3phh_A          118 YQNALILGAGGSAKALACELKKQG-LQVSVLNR  149 (269)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTT-CEEEEECS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCC-CEEEEEeC
Confidence            789999999999999999999999 88999865

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=96.64  E-value=0.0023  Score=57.14  Aligned_cols=34  Identities=24%  Similarity=0.347  Sum_probs=31.5

Q ss_pred             HhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565           29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        29 l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      ++.++|+|+|+|++|..+++.|...|+ +++++|.
T Consensus       127 ~~~~~v~iiGaG~~g~aia~~L~~~g~-~V~v~~r  160 (275)
T 2hk9_A          127 VKEKSILVLGAGGASRAVIYALVKEGA-KVFLWNR  160 (275)
T ss_dssp             GGGSEEEEECCSHHHHHHHHHHHHHTC-EEEEECS
T ss_pred             cCCCEEEEECchHHHHHHHHHHHHcCC-EEEEEEC
Confidence            677899999999999999999999998 8999876

>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*

Probab=96.62  E-value=0.01  Score=53.68  Aligned_cols=114  Identities=17%  Similarity=0.163  Sum_probs=68.8

Q ss_pred             CcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEeeC
Q 020565           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKG  111 (324)
Q Consensus        32 ~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~~  111 (324)
                      ++|.+||+|..|..+++||+.+|.. ++++|.+.-..+.+...           |-..+...++..+  ..++-+.....
T Consensus         4 ~kIgfIGlG~MG~~mA~~L~~~G~~-v~v~dr~~~~~~~l~~~-----------Ga~~a~s~~e~~~--~~dvv~~~l~~   69 (300)
T 3obb_A            4 KQIAFIGLGHMGAPMATNLLKAGYL-LNVFDLVQSAVDGLVAA-----------GASAARSARDAVQ--GADVVISMLPA   69 (300)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCE-EEEECSSHHHHHHHHHT-----------TCEECSSHHHHHT--TCSEEEECCSC
T ss_pred             CEEEEeeehHHHHHHHHHHHhCCCe-EEEEcCCHHHHHHHHHc-----------CCEEcCCHHHHHh--cCCceeecCCc
Confidence            4799999999999999999999985 88888643322222111           2211222222222  12222222211


Q ss_pred             C--CCC------CchhhcCCccEEEEcC-CCHHHHHHHHHHHHhccCCccEEEeeecCc
Q 020565          112 D--LSS------LDGEFYDKFDVVVVSC-CSVTTKKLINEKCRKLSKRVAFYTVDCRDS  161 (324)
Q Consensus       112 ~--~~~------~~~~~~~~~diVi~~~-~~~~~~~~l~~~~~~~~~~ip~i~~~~~G~  161 (324)
                      .  ..+      -....++.-++||+++ .++++.+.+.+.+.+  +++-|+++.+.|.
T Consensus        70 ~~~v~~V~~~~~g~~~~~~~g~iiId~sT~~p~~~~~~a~~~~~--~G~~~lDaPVsGg  126 (300)
T 3obb_A           70 SQHVEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARE--RGLAMLDAPVSGG  126 (300)
T ss_dssp             HHHHHHHHHSSSSSTTSCCC-CEEEECSCCCHHHHHHHHHHHHT--TTCEEEECCEESC
T ss_pred             hHHHHHHHhchhhhhhcCCCCCEEEECCCCCHHHHHHHHHHHHH--cCCEEEecCCCCC
Confidence            1  000      0112234456788775 578888999999999  9999999988774

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=96.60  E-value=0.0061  Score=55.69  Aligned_cols=76  Identities=16%  Similarity=0.182  Sum_probs=53.1

Q ss_pred             HhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhC----CCC
Q 020565           29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFN----PMV  104 (324)
Q Consensus        29 l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~ln----p~v  104 (324)
                      ++..+|.|+|+|.+|+.++..|+..|+++++++|-+                      ..|++..+..|....    ..+
T Consensus         3 m~~~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~----------------------~~~~~g~a~dL~~~~~~~~~~~   60 (321)
T 3p7m_A            3 MARKKITLVGAGNIGGTLAHLALIKQLGDVVLFDIA----------------------QGMPNGKALDLLQTCPIEGVDF   60 (321)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSS----------------------SSHHHHHHHHHHTTHHHHTCCC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCC----------------------hHHHHHHHHHHHhhhhhcCCCc
Confidence            346789999999999999999999998788998872                      224444444555432    234


Q ss_pred             eEeEeeCCCCCCchhhcCCccEEEEcCC
Q 020565          105 RVSVEKGDLSSLDGEFYDKFDVVVVSCC  132 (324)
Q Consensus       105 ~v~~~~~~~~~~~~~~~~~~diVi~~~~  132 (324)
                      ++....      ..+.++++|+||.+..
T Consensus        61 ~v~~t~------d~~a~~~aDvVIi~ag   82 (321)
T 3p7m_A           61 KVRGTN------DYKDLENSDVVIVTAG   82 (321)
T ss_dssp             CEEEES------CGGGGTTCSEEEECCS
T ss_pred             EEEEcC------CHHHHCCCCEEEEcCC
Confidence            444321      1356889999999864

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=96.58  E-value=0.009  Score=54.36  Aligned_cols=34  Identities=15%  Similarity=0.133  Sum_probs=30.0

Q ss_pred             cCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d   64 (324)
                      ..+|.|||+|.+|..++.+|+..|..+++++|.+
T Consensus        24 ~m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~   57 (317)
T 4ezb_A           24 MTTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLR   57 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCSEEEEECGG
T ss_pred             CCeEEEECccHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            4689999999999999999999994468888874

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=96.58  E-value=0.014  Score=53.12  Aligned_cols=34  Identities=15%  Similarity=0.137  Sum_probs=30.5

Q ss_pred             cCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d   64 (324)
                      ..+|.|||+|.+|+.++..|+..|..+++++|.+
T Consensus         4 ~~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~   37 (317)
T 2ewd_A            4 RRKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIA   37 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCC
Confidence            3589999999999999999999998569999874

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=96.57  E-value=0.0034  Score=54.90  Aligned_cols=32  Identities=9%  Similarity=0.069  Sum_probs=28.6

Q ss_pred             CcEEEEcCchhHHHHHHHHHHhCC---CcEEEEcC
Q 020565           32 SHILVCGMKGTVAEFCKNIVLAGV---GSLTLMDD   63 (324)
Q Consensus        32 ~~VliiG~g~lGsei~k~L~~~Gv---~~i~lvD~   63 (324)
                      .+|.|||+|.+|..++++|...|.   .+++++|.
T Consensus         3 ~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r   37 (247)
T 3gt0_A            3 KQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDL   37 (247)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECS
T ss_pred             CeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeC
Confidence            589999999999999999999997   36888776

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=96.57  E-value=0.0028  Score=56.65  Aligned_cols=31  Identities=16%  Similarity=0.189  Sum_probs=28.6

Q ss_pred             CcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        32 ~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      .+|.|||+|.+|+.+|..|+.+|. +++++|.
T Consensus         5 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~   35 (283)
T 4e12_A            5 TNVTVLGTGVLGSQIAFQTAFHGF-AVTAYDI   35 (283)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCC-eEEEEeC
Confidence            689999999999999999999998 5888886

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=96.55  E-value=0.0041  Score=56.96  Aligned_cols=76  Identities=16%  Similarity=0.210  Sum_probs=54.8

Q ss_pred             hcCcEEEEcCchhHHHHHHHHHHhCC-CcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCC-eEe
Q 020565           30 SKSHILVCGMKGTVAEFCKNIVLAGV-GSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMV-RVS  107 (324)
Q Consensus        30 ~~~~VliiG~g~lGsei~k~L~~~Gv-~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v-~v~  107 (324)
                      ...+|.|+|+|.+|+.++..|+..|+ ++++++|.                      ...|++..+..|....|.. .+.
T Consensus         8 ~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~----------------------~~~k~~g~a~DL~~~~~~~~~~~   65 (326)
T 3vku_A            8 DHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDI----------------------FKDKTKGDAIDLEDALPFTSPKK   65 (326)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECS----------------------CHHHHHHHHHHHHTTGGGSCCCE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeC----------------------ChHHHHHHHhhHhhhhhhcCCcE
Confidence            45789999999999999999999998 58999886                      3446666666676655421 122


Q ss_pred             EeeCCCCCCchhhcCCccEEEEcCC
Q 020565          108 VEKGDLSSLDGEFYDKFDVVVVSCC  132 (324)
Q Consensus       108 ~~~~~~~~~~~~~~~~~diVi~~~~  132 (324)
                      ....     ..+.++++|+||.+..
T Consensus        66 i~~~-----~~~a~~~aDiVvi~ag   85 (326)
T 3vku_A           66 IYSA-----EYSDAKDADLVVITAG   85 (326)
T ss_dssp             EEEC-----CGGGGTTCSEEEECCC
T ss_pred             EEEC-----cHHHhcCCCEEEECCC
Confidence            2221     2455889999998865

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=96.54  E-value=0.0036  Score=56.03  Aligned_cols=78  Identities=13%  Similarity=0.063  Sum_probs=53.6

Q ss_pred             HhcCcEEEEc-CchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEe
Q 020565           29 LSKSHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS  107 (324)
Q Consensus        29 l~~~~VliiG-~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~  107 (324)
                      ++.++++|+| .||+|..+++.|+..|.. ++++|.                      ...|++.+++.+... +.+.+.
T Consensus       117 l~gk~vlVtGaaGGiG~aia~~L~~~G~~-V~i~~R----------------------~~~~~~~l~~~~~~~-~~~~~~  172 (287)
T 1lu9_A          117 VKGKKAVVLAGTGPVGMRSAALLAGEGAE-VVLCGR----------------------KLDKAQAAADSVNKR-FKVNVT  172 (287)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHHHTTCE-EEEEES----------------------SHHHHHHHHHHHHHH-HTCCCE
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCcCE-EEEEEC----------------------CHHHHHHHHHHHHhc-CCcEEE
Confidence            5678999999 899999999999999986 888765                      233566666666543 122222


Q ss_pred             EeeCCCCC--CchhhcCCccEEEEcCC
Q 020565          108 VEKGDLSS--LDGEFYDKFDVVVVSCC  132 (324)
Q Consensus       108 ~~~~~~~~--~~~~~~~~~diVi~~~~  132 (324)
                      .  .++.+  ...+.++.+|+||.++.
T Consensus       173 ~--~D~~~~~~~~~~~~~~DvlVn~ag  197 (287)
T 1lu9_A          173 A--AETADDASRAEAVKGAHFVFTAGA  197 (287)
T ss_dssp             E--EECCSHHHHHHHTTTCSEEEECCC
T ss_pred             E--ecCCCHHHHHHHHHhCCEEEECCC
Confidence            2  22322  22455678899999884

>2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp}

Probab=96.52  E-value=0.0048  Score=59.08  Aligned_cols=100  Identities=9%  Similarity=0.137  Sum_probs=64.9

Q ss_pred             cCcEEEEcCchhHHHHHHHHHHh-CC--CcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEe
Q 020565           31 KSHILVCGMKGTVAEFCKNIVLA-GV--GSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS  107 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~~~-Gv--~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~  107 (324)
                      +.+|+|||+|++|+.++..|++. ++  ..|+++|.+..                   ++..    .+.+     .+++.
T Consensus        13 ~~rVlIIGaGgVG~~va~lla~~~dv~~~~I~vaD~~~~-------------------~~~~----~~~~-----g~~~~   64 (480)
T 2ph5_A           13 KNRFVILGFGCVGQALMPLIFEKFDIKPSQVTIIAAEGT-------------------KVDV----AQQY-----GVSFK   64 (480)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHHBCCCGGGEEEEESSCC-------------------SCCH----HHHH-----TCEEE
T ss_pred             CCCEEEECcCHHHHHHHHHHHhCCCCceeEEEEeccchh-------------------hhhH----Hhhc-----CCcee
Confidence            57899999999999999999986 45  47999976332                   2211    1111     12333


Q ss_pred             EeeCCCCCC-----chhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEeeecCceE
Q 020565          108 VEKGDLSSL-----DGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCG  163 (324)
Q Consensus       108 ~~~~~~~~~-----~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~~~~G~~g  163 (324)
                      .  ..++..     ...++++.|+||++.... ....+-+.|.+  .++-+|+....-..+
T Consensus        65 ~--~~Vdadnv~~~l~aLl~~~DvVIN~s~~~-~~l~Im~acle--aGv~YlDTa~E~~~p  120 (480)
T 2ph5_A           65 L--QQITPQNYLEVIGSTLEENDFLIDVSIGI-SSLALIILCNQ--KGALYINAATEPWKE  120 (480)
T ss_dssp             E--CCCCTTTHHHHTGGGCCTTCEEEECCSSS-CHHHHHHHHHH--HTCEEEESSCCCCCC
T ss_pred             E--EeccchhHHHHHHHHhcCCCEEEECCccc-cCHHHHHHHHH--cCCCEEECCCCcccc
Confidence            2  233221     234666679999876544 44578899999  888888877543333

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=96.52  E-value=0.0072  Score=55.33  Aligned_cols=75  Identities=16%  Similarity=0.153  Sum_probs=53.9

Q ss_pred             cCcEEEEcCchhHHHHHHHHHHhCC-CcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCC--eEe
Q 020565           31 KSHILVCGMKGTVAEFCKNIVLAGV-GSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMV--RVS  107 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~~~Gv-~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v--~v~  107 (324)
                      ..+|.|+|+|.+|+.++..|+..|. ++++++|.                      ...|++..+..|+...|..  .+.
T Consensus         5 ~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~----------------------~~~k~~g~a~DL~~~~~~~~~~v~   62 (326)
T 3pqe_A            5 VNKVALIGAGFVGSSYAFALINQGITDELVVIDV----------------------NKEKAMGDVMDLNHGKAFAPQPVK   62 (326)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECS----------------------CHHHHHHHHHHHHHTGGGSSSCCE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCceEEEEec----------------------chHHHHHHHHHHHhccccccCCeE
Confidence            4589999999999999999999997 58999886                      4446666666666655432  222


Q ss_pred             EeeCCCCCCchhhcCCccEEEEcCC
Q 020565          108 VEKGDLSSLDGEFYDKFDVVVVSCC  132 (324)
Q Consensus       108 ~~~~~~~~~~~~~~~~~diVi~~~~  132 (324)
                      ....+     .+.++++|+||.+..
T Consensus        63 i~~~~-----~~a~~~aDvVvi~ag   82 (326)
T 3pqe_A           63 TSYGT-----YEDCKDADIVCICAG   82 (326)
T ss_dssp             EEEEC-----GGGGTTCSEEEECCS
T ss_pred             EEeCc-----HHHhCCCCEEEEecc
Confidence            22211     345789999998864

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=96.48  E-value=0.006  Score=54.99  Aligned_cols=34  Identities=18%  Similarity=0.114  Sum_probs=29.9

Q ss_pred             cCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCc
Q 020565           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV   65 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~   65 (324)
                      ..+|.|||+|.+|+.++++|+..|. +++++|.+.
T Consensus         7 ~~~I~iIG~G~mG~~~a~~l~~~G~-~V~~~dr~~   40 (303)
T 3g0o_A            7 DFHVGIVGLGSMGMGAARSCLRAGL-STWGADLNP   40 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCC-eEEEEECCH
Confidence            4689999999999999999999997 588888743

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=96.48  E-value=0.01  Score=52.62  Aligned_cols=30  Identities=3%  Similarity=0.051  Sum_probs=26.6

Q ss_pred             CcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        32 ~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      .+|.|||+|.+|+.++++|+. |.. ++++|.
T Consensus         2 ~~i~iiG~G~~G~~~a~~l~~-g~~-V~~~~~   31 (289)
T 2cvz_A            2 EKVAFIGLGAMGYPMAGHLAR-RFP-TLVWNR   31 (289)
T ss_dssp             CCEEEECCSTTHHHHHHHHHT-TSC-EEEECS
T ss_pred             CeEEEEcccHHHHHHHHHHhC-CCe-EEEEeC
Confidence            379999999999999999999 974 888875

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=96.48  E-value=0.0033  Score=56.17  Aligned_cols=35  Identities=23%  Similarity=0.249  Sum_probs=30.4

Q ss_pred             CcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccc
Q 020565           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVT   67 (324)
Q Consensus        32 ~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~   67 (324)
                      .+|.|||+|.+|+.++.+|+..|. +++++|.+.-.
T Consensus         2 ~~i~iIG~G~mG~~~a~~l~~~G~-~V~~~dr~~~~   36 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNLVKAGC-SVTIWNRSPEK   36 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSGGG
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCC-eEEEEcCCHHH
Confidence            579999999999999999999996 58899875433

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=96.46  E-value=0.0061  Score=56.55  Aligned_cols=119  Identities=13%  Similarity=0.125  Sum_probs=71.1

Q ss_pred             HHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhh-CCCCeE
Q 020565           28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDF-NPMVRV  106 (324)
Q Consensus        28 ~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~l-np~v~v  106 (324)
                      .++..+|.|||+|.+|..++.+|+..|. .++++|.+.-....+...           |-..+....+.+... .|++-+
T Consensus        19 Mm~~mkIgiIGlG~mG~~~A~~L~~~G~-~V~v~dr~~~~~~~l~~~-----------g~~~~~s~~e~~~~a~~~DvVi   86 (358)
T 4e21_A           19 YFQSMQIGMIGLGRMGADMVRRLRKGGH-ECVVYDLNVNAVQALERE-----------GIAGARSIEEFCAKLVKPRVVW   86 (358)
T ss_dssp             ---CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHTT-----------TCBCCSSHHHHHHHSCSSCEEE
T ss_pred             hhcCCEEEEECchHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHC-----------CCEEeCCHHHHHhcCCCCCEEE
Confidence            4566799999999999999999999996 588998764333332221           100011112222322 345544


Q ss_pred             eEeeCCC-CCC---chhhcCCccEEEEcCC-CHHHHHHHHHHHHhccCCccEEEeeecC
Q 020565          107 SVEKGDL-SSL---DGEFYDKFDVVVVSCC-SVTTKKLINEKCRKLSKRVAFYTVDCRD  160 (324)
Q Consensus       107 ~~~~~~~-~~~---~~~~~~~~diVi~~~~-~~~~~~~l~~~~~~~~~~ip~i~~~~~G  160 (324)
                      ...+... .+.   ....++.-++||+++. .+.....+.+.+.+  +++.|+.+.+.|
T Consensus        87 ~~vp~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~--~g~~~vdapVsG  143 (358)
T 4e21_A           87 LMVPAAVVDSMLQRMTPLLAANDIVIDGGNSHYQDDIRRADQMRA--QGITYVDVGTSG  143 (358)
T ss_dssp             ECSCGGGHHHHHHHHGGGCCTTCEEEECSSCCHHHHHHHHHHHHT--TTCEEEEEEEEC
T ss_pred             EeCCHHHHHHHHHHHHhhCCCCCEEEeCCCCChHHHHHHHHHHHH--CCCEEEeCCCCC
Confidence            4433321 111   1223556678888765 45666777888888  899999887765

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=96.46  E-value=0.0092  Score=54.26  Aligned_cols=93  Identities=14%  Similarity=0.066  Sum_probs=56.7

Q ss_pred             CcEEEEcCchhHHHHHHHHHHhCCC-cEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEee
Q 020565           32 SHILVCGMKGTVAEFCKNIVLAGVG-SLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEK  110 (324)
Q Consensus        32 ~~VliiG~g~lGsei~k~L~~~Gv~-~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~  110 (324)
                      .+|.|||+|.+|..+++.|...|.. .++++|.+                      ..+.+.+    .+..  +.... .
T Consensus        34 ~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~----------------------~~~~~~a----~~~G--~~~~~-~   84 (314)
T 3ggo_A           34 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDIN----------------------PESISKA----VDLG--IIDEG-T   84 (314)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSC----------------------HHHHHHH----HHTT--SCSEE-E
T ss_pred             CEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECC----------------------HHHHHHH----HHCC--Ccchh-c
Confidence            6899999999999999999999974 68887762                      1122221    2221  10001 1


Q ss_pred             CCCCCCchh-hcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEee
Q 020565          111 GDLSSLDGE-FYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVD  157 (324)
Q Consensus       111 ~~~~~~~~~-~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~~  157 (324)
                          ....+ .++++|+||.|.-.......+.++...+..+..+++++
T Consensus        85 ----~~~~~~~~~~aDvVilavp~~~~~~vl~~l~~~l~~~~iv~d~~  128 (314)
T 3ggo_A           85 ----TSIAKVEDFSPDFVMLSSPVRTFREIAKKLSYILSEDATVTDQG  128 (314)
T ss_dssp             ----SCTTGGGGGCCSEEEECSCGGGHHHHHHHHHHHSCTTCEEEECC
T ss_pred             ----CCHHHHhhccCCEEEEeCCHHHHHHHHHHHhhccCCCcEEEECC
Confidence                11234 56789999999876555555555544333454455543

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=96.46  E-value=0.013  Score=51.77  Aligned_cols=97  Identities=14%  Similarity=0.119  Sum_probs=61.8

Q ss_pred             hcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEe
Q 020565           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVE  109 (324)
Q Consensus        30 ~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~  109 (324)
                      +..+|+|.|+|.+|+.+++.|...|.. ++.++...-.   +                             .+.+  +..
T Consensus         2 ~~~~ilVtGaG~iG~~l~~~L~~~g~~-V~~~~r~~~~---~-----------------------------~~~~--~~~   46 (286)
T 3gpi_A            2 SLSKILIAGCGDLGLELARRLTAQGHE-VTGLRRSAQP---M-----------------------------PAGV--QTL   46 (286)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHTTCC-EEEEECTTSC---C-----------------------------CTTC--CEE
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCE-EEEEeCCccc---c-----------------------------ccCC--ceE
Confidence            456899999999999999999999974 7777552111   1                             0112  222


Q ss_pred             eCCCCC--CchhhcCC-ccEEEEcCC------------CHHHHHHHHHHHHhccCCc-cEEEeeecCceE
Q 020565          110 KGDLSS--LDGEFYDK-FDVVVVSCC------------SVTTKKLINEKCRKLSKRV-AFYTVDCRDSCG  163 (324)
Q Consensus       110 ~~~~~~--~~~~~~~~-~diVi~~~~------------~~~~~~~l~~~~~~~~~~i-p~i~~~~~G~~g  163 (324)
                      ..++.+  .....+++ +|+||.+..            +......+-+.|++  .++ .||++++.+.+|
T Consensus        47 ~~Dl~d~~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~n~~~~~~ll~a~~~--~~~~~~v~~SS~~vyg  114 (286)
T 3gpi_A           47 IADVTRPDTLASIVHLRPEILVYCVAASEYSDEHYRLSYVEGLRNTLSALEG--APLQHVFFVSSTGVYG  114 (286)
T ss_dssp             ECCTTCGGGCTTGGGGCCSEEEECHHHHHHC-----CCSHHHHHHHHHHTTT--SCCCEEEEEEEGGGCC
T ss_pred             EccCCChHHHHHhhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHhh--CCCCEEEEEcccEEEc
Confidence            333332  12334444 899887652            23345567778877  664 588888887776

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=96.45  E-value=0.0091  Score=52.88  Aligned_cols=89  Identities=11%  Similarity=0.034  Sum_probs=55.0

Q ss_pred             cEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEeeCC
Q 020565           33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGD  112 (324)
Q Consensus        33 ~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~~~  112 (324)
                      +|.|||+|.+|+.+++.|...|. +++++|.+                      ..+++.+    .+..  +....    
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~~~----------------------~~~~~~~----~~~g--~~~~~----   48 (279)
T 2f1k_A            2 KIGVVGLGLIGASLAGDLRRRGH-YLIGVSRQ----------------------QSTCEKA----VERQ--LVDEA----   48 (279)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-EEEEECSC----------------------HHHHHHH----HHTT--SCSEE----
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCC-EEEEEECC----------------------HHHHHHH----HhCC--CCccc----
Confidence            69999999999999999999997 58887652                      2222222    2211  10011    


Q ss_pred             CCCCchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEe
Q 020565          113 LSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTV  156 (324)
Q Consensus       113 ~~~~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~  156 (324)
                       .....+. +++|+||.|+-+......+.++...+..+..++++
T Consensus        49 -~~~~~~~-~~~D~vi~av~~~~~~~~~~~l~~~~~~~~~vv~~   90 (279)
T 2f1k_A           49 -GQDLSLL-QTAKIIFLCTPIQLILPTLEKLIPHLSPTAIVTDV   90 (279)
T ss_dssp             -ESCGGGG-TTCSEEEECSCHHHHHHHHHHHGGGSCTTCEEEEC
T ss_pred             -cCCHHHh-CCCCEEEEECCHHHHHHHHHHHHhhCCCCCEEEEC
Confidence             1112344 78999999988766555666554433345556654

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=96.44  E-value=0.021  Score=51.69  Aligned_cols=35  Identities=14%  Similarity=0.178  Sum_probs=29.8

Q ss_pred             hcCcEEEEcCchhHHHHHHHHHHhCC-CcEEEEcCC
Q 020565           30 SKSHILVCGMKGTVAEFCKNIVLAGV-GSLTLMDDR   64 (324)
Q Consensus        30 ~~~~VliiG~g~lGsei~k~L~~~Gv-~~i~lvD~d   64 (324)
                      +..+|.|||+|++|+.++..|+..|. ++++++|.+
T Consensus         6 ~~mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~   41 (319)
T 1lld_A            6 KPTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIA   41 (319)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            34689999999999999999999995 468998873

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=96.44  E-value=0.012  Score=53.95  Aligned_cols=33  Identities=21%  Similarity=0.222  Sum_probs=29.0

Q ss_pred             cCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d   64 (324)
                      ..+|+|||+|.+|+.++..|+..|. +++++|.+
T Consensus         4 ~mki~iiG~G~~G~~~a~~L~~~g~-~V~~~~r~   36 (359)
T 1bg6_A            4 SKTYAVLGLGNGGHAFAAYLALKGQ-SVLAWDID   36 (359)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSC
T ss_pred             cCeEEEECCCHHHHHHHHHHHhCCC-EEEEEeCC
Confidence            3689999999999999999999996 48888763

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=96.43  E-value=0.01  Score=50.49  Aligned_cols=37  Identities=16%  Similarity=0.177  Sum_probs=28.2

Q ss_pred             HHHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565           26 QRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        26 q~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      ...+...+|.|||+|.+|+.++..|+..|. +++++|.
T Consensus        14 ~~~~~~~~I~iiG~G~mG~~la~~l~~~g~-~V~~~~~   50 (209)
T 2raf_A           14 NLYFQGMEITIFGKGNMGQAIGHNFEIAGH-EVTYYGS   50 (209)
T ss_dssp             ------CEEEEECCSHHHHHHHHHHHHTTC-EEEEECT
T ss_pred             ccccCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcC
Confidence            345778899999999999999999999996 5888765

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=96.43  E-value=0.0051  Score=54.95  Aligned_cols=34  Identities=18%  Similarity=0.191  Sum_probs=29.8

Q ss_pred             CcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCcc
Q 020565           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVV   66 (324)
Q Consensus        32 ~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v   66 (324)
                      .+|.|||+|.+|+.++++|+..|. +++++|.+.-
T Consensus         2 ~~I~iiG~G~mG~~~a~~l~~~G~-~V~~~dr~~~   35 (287)
T 3pdu_A            2 TTYGFLGLGIMGGPMAANLVRAGF-DVTVWNRNPA   35 (287)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHHTC-CEEEECSSGG
T ss_pred             CeEEEEccCHHHHHHHHHHHHCCC-eEEEEcCCHH
Confidence            479999999999999999999996 4899987543

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}

Probab=96.42  E-value=0.017  Score=52.38  Aligned_cols=72  Identities=18%  Similarity=0.135  Sum_probs=50.6

Q ss_pred             cEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHh----hCCCCeEeE
Q 020565           33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKD----FNPMVRVSV  108 (324)
Q Consensus        33 ~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~----lnp~v~v~~  108 (324)
                      ||.|+|+|.+|+.++..|+..|++++.|+|-+                      ..|++..+..+..    .+..+++..
T Consensus         1 KI~IiGaG~vG~~~a~~l~~~~l~el~L~Di~----------------------~~~~~g~~~dl~~~~~~~~~~~~i~~   58 (308)
T 2d4a_B            1 MITILGAGKVGMATAVMLMMRGYDDLLLIART----------------------PGKPQGEALDLAHAAAELGVDIRISG   58 (308)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCSCEEEECSS----------------------TTHHHHHHHHHHHHHHHHTCCCCEEE
T ss_pred             CEEEECcCHHHHHHHHHHHhCCCCEEEEEcCC----------------------hhhHHHHHHHHHHhhhhcCCCeEEEE
Confidence            68999999999999999999999669999873                      2233333444443    344556654


Q ss_pred             eeCCCCCCchhhcCCccEEEEcCC
Q 020565          109 EKGDLSSLDGEFYDKFDVVVVSCC  132 (324)
Q Consensus       109 ~~~~~~~~~~~~~~~~diVi~~~~  132 (324)
                      ..    +  .+.++++|+||.+..
T Consensus        59 t~----d--~~a~~~aD~Vi~~ag   76 (308)
T 2d4a_B           59 SN----S--YEDMRGSDIVLVTAG   76 (308)
T ss_dssp             ES----C--GGGGTTCSEEEECCS
T ss_pred             CC----C--HHHhCCCCEEEEeCC
Confidence            31    1  235789999999854

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=96.41  E-value=0.031  Score=50.44  Aligned_cols=75  Identities=13%  Similarity=0.156  Sum_probs=50.9

Q ss_pred             CcEEEEcCchhHHHHHHHHHHhCC-CcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCC----CCeE
Q 020565           32 SHILVCGMKGTVAEFCKNIVLAGV-GSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNP----MVRV  106 (324)
Q Consensus        32 ~~VliiG~g~lGsei~k~L~~~Gv-~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp----~v~v  106 (324)
                      .+|.|||+|.+|+.++..|+..|. .+++++|.                      ...|++.++..+...++    .+++
T Consensus         2 ~kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~----------------------~~~~~~~~~~~l~~~~~~~~~~~~~   59 (309)
T 1hyh_A            2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDA----------------------NEAKVKADQIDFQDAMANLEAHGNI   59 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECS----------------------SHHHHHHHHHHHHHHGGGSSSCCEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEcC----------------------CHHHHHHHHHHHHhhhhhcCCCeEE
Confidence            379999999999999999999996 67888886                      33344444444443321    2232


Q ss_pred             eEeeCCCCCCchhhcCCccEEEEcCCCHH
Q 020565          107 SVEKGDLSSLDGEFYDKFDVVVVSCCSVT  135 (324)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~diVi~~~~~~~  135 (324)
                      .  ..   + . +.++++|+||.+...+.
T Consensus        60 ~--~~---d-~-~~~~~aDvViiav~~~~   81 (309)
T 1hyh_A           60 V--IN---D-W-AALADADVVISTLGNIK   81 (309)
T ss_dssp             E--ES---C-G-GGGTTCSEEEECCSCGG
T ss_pred             E--eC---C-H-HHhCCCCEEEEecCCcc
Confidence            2  11   1 1 45789999999987644

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=96.39  E-value=0.0067  Score=55.17  Aligned_cols=33  Identities=15%  Similarity=0.181  Sum_probs=29.7

Q ss_pred             CcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCc
Q 020565           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV   65 (324)
Q Consensus        32 ~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~   65 (324)
                      .+|+|+|+|++|+.++..|+.+|. .++++|.+.
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~-~V~~~~r~~   35 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAKTGH-CVSVVSRSD   35 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHTTC-EEEEECSTT
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCh
Confidence            589999999999999999999996 699988754

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=96.38  E-value=0.023  Score=51.64  Aligned_cols=72  Identities=18%  Similarity=0.190  Sum_probs=50.3

Q ss_pred             cCcEEEEcCchhHHHHHHHHHHhCC-CcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCC----CCe
Q 020565           31 KSHILVCGMKGTVAEFCKNIVLAGV-GSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNP----MVR  105 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~~~Gv-~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp----~v~  105 (324)
                      ..+|.|||+|.+|+.++..|+..|. +++.++|-+                      ..|++..+..+....+    .++
T Consensus         6 ~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~----------------------~~~~~~~~~dl~~~~~~~~~~~~   63 (316)
T 1ldn_A            6 GARVVVIGAGFVGASYVFALMNQGIADEIVLIDAN----------------------ESKAIGDAMDFNHGKVFAPKPVD   63 (316)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS----------------------HHHHHHHHHHHHHHTTSSSSCCE
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCC----------------------cchHHHHHhhHHHHhhhcCCCeE
Confidence            3589999999999999999999985 679998862                      2244444444554444    344


Q ss_pred             EeEeeCCCCCCchhhcCCccEEEEcC
Q 020565          106 VSVEKGDLSSLDGEFYDKFDVVVVSC  131 (324)
Q Consensus       106 v~~~~~~~~~~~~~~~~~~diVi~~~  131 (324)
                      +..  .     ..+.++++|+||.+.
T Consensus        64 i~~--~-----~~~al~~aDvViia~   82 (316)
T 1ldn_A           64 IWH--G-----DYDDCRDADLVVICA   82 (316)
T ss_dssp             EEE--C-----CGGGTTTCSEEEECC
T ss_pred             EEc--C-----cHHHhCCCCEEEEcC
Confidence            432  1     134578999999985

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=96.37  E-value=0.012  Score=52.26  Aligned_cols=92  Identities=15%  Similarity=0.114  Sum_probs=56.1

Q ss_pred             CcEEEEcCchhHHHHHHHHHHhCCC-cEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEee
Q 020565           32 SHILVCGMKGTVAEFCKNIVLAGVG-SLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEK  110 (324)
Q Consensus        32 ~~VliiG~g~lGsei~k~L~~~Gv~-~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~  110 (324)
                      .+|.|||+|.+|..+++.|...|.. +++++|.+                      ..+.+.+    ++..  +.... .
T Consensus         2 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~----------------------~~~~~~~----~~~g--~~~~~-~   52 (281)
T 2g5c_A            2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDIN----------------------PESISKA----VDLG--IIDEG-T   52 (281)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSC----------------------HHHHHHH----HHTT--SCSEE-E
T ss_pred             cEEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCC----------------------HHHHHHH----HHCC--Ccccc-c
Confidence            3799999999999999999999963 57777652                      1222221    2221  11001 1


Q ss_pred             CCCCCCchhhcC-CccEEEEcCCCHHHHHHHHHHHHhccCCccEEEe
Q 020565          111 GDLSSLDGEFYD-KFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTV  156 (324)
Q Consensus       111 ~~~~~~~~~~~~-~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~  156 (324)
                          ....+.++ ++|+||.|.-+......+.++...+..+..++++
T Consensus        53 ----~~~~~~~~~~aDvVilavp~~~~~~v~~~l~~~l~~~~iv~~~   95 (281)
T 2g5c_A           53 ----TSIAKVEDFSPDFVMLSSPVRTFREIAKKLSYILSEDATVTDQ   95 (281)
T ss_dssp             ----SCGGGGGGTCCSEEEECSCHHHHHHHHHHHHHHSCTTCEEEEC
T ss_pred             ----CCHHHHhcCCCCEEEEcCCHHHHHHHHHHHHhhCCCCcEEEEC
Confidence                11234567 8999999987766665666554333344445543

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=96.34  E-value=0.011  Score=53.78  Aligned_cols=35  Identities=14%  Similarity=0.146  Sum_probs=29.2

Q ss_pred             HhcCcEEEEcCchhHHHHHHHHHHhCC---CcEEEEcC
Q 020565           29 LSKSHILVCGMKGTVAEFCKNIVLAGV---GSLTLMDD   63 (324)
Q Consensus        29 l~~~~VliiG~g~lGsei~k~L~~~Gv---~~i~lvD~   63 (324)
                      +...+|.|||+|.+|+.++.+|+.+|+   ..++++|.
T Consensus        20 ~~~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r   57 (322)
T 2izz_A           20 FQSMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSP   57 (322)
T ss_dssp             --CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECS
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECC
Confidence            444689999999999999999999995   56888775

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=96.34  E-value=0.0089  Score=52.17  Aligned_cols=38  Identities=13%  Similarity=0.070  Sum_probs=30.3

Q ss_pred             HHHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565           26 QRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (324)
Q Consensus        26 q~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d   64 (324)
                      ...+...+|.|||+|.+|+.++++|+..|. +++++|.+
T Consensus        14 ~~~~~~~kIgiIG~G~mG~alA~~L~~~G~-~V~~~~r~   51 (245)
T 3dtt_A           14 NLYFQGMKIAVLGTGTVGRTMAGALADLGH-EVTIGTRD   51 (245)
T ss_dssp             -----CCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             ccccCCCeEEEECCCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            357889999999999999999999999997 58888764

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=96.33  E-value=0.0078  Score=54.77  Aligned_cols=37  Identities=14%  Similarity=0.135  Sum_probs=31.1

Q ss_pred             HHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCc
Q 020565           28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV   65 (324)
Q Consensus        28 ~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~   65 (324)
                      +.+..+|.|||+|.+|..++++|+..|.. ++++|.+.
T Consensus        28 ~~~~~~I~iIG~G~mG~~~a~~l~~~G~~-V~~~dr~~   64 (320)
T 4dll_A           28 DPYARKITFLGTGSMGLPMARRLCEAGYA-LQVWNRTP   64 (320)
T ss_dssp             -CCCSEEEEECCTTTHHHHHHHHHHTTCE-EEEECSCH
T ss_pred             ccCCCEEEEECccHHHHHHHHHHHhCCCe-EEEEcCCH
Confidence            34556899999999999999999999974 88888753

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=96.32  E-value=0.033  Score=49.05  Aligned_cols=99  Identities=8%  Similarity=0.012  Sum_probs=63.0

Q ss_pred             cCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEee
Q 020565           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEK  110 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~  110 (324)
                      ..+|+|.|+|.+|+.+++.|...|.. ++.++.+.                      .+.+.    +..  +  .++...
T Consensus         5 ~~~ilVtGaG~iG~~l~~~L~~~g~~-V~~~~r~~----------------------~~~~~----~~~--~--~~~~~~   53 (286)
T 3ius_A            5 TGTLLSFGHGYTARVLSRALAPQGWR-IIGTSRNP----------------------DQMEA----IRA--S--GAEPLL   53 (286)
T ss_dssp             CCEEEEETCCHHHHHHHHHHGGGTCE-EEEEESCG----------------------GGHHH----HHH--T--TEEEEE
T ss_pred             cCcEEEECCcHHHHHHHHHHHHCCCE-EEEEEcCh----------------------hhhhh----Hhh--C--CCeEEE
Confidence            46899999999999999999999964 66664411                      11111    111  1  344555


Q ss_pred             CCCCCCchhhcCCccEEEEcCCCH----HHHHHHHHHHHhccCC-ccEEEeeecCceE
Q 020565          111 GDLSSLDGEFYDKFDVVVVSCCSV----TTKKLINEKCRKLSKR-VAFYTVDCRDSCG  163 (324)
Q Consensus       111 ~~~~~~~~~~~~~~diVi~~~~~~----~~~~~l~~~~~~~~~~-ip~i~~~~~G~~g  163 (324)
                      .++.+..   +.++|+||.+....    .....+-+.|++...+ ..||++++.+.+|
T Consensus        54 ~D~~d~~---~~~~d~vi~~a~~~~~~~~~~~~l~~a~~~~~~~~~~~v~~Ss~~vyg  108 (286)
T 3ius_A           54 WPGEEPS---LDGVTHLLISTAPDSGGDPVLAALGDQIAARAAQFRWVGYLSTTAVYG  108 (286)
T ss_dssp             SSSSCCC---CTTCCEEEECCCCBTTBCHHHHHHHHHHHHTGGGCSEEEEEEEGGGGC
T ss_pred             ecccccc---cCCCCEEEECCCccccccHHHHHHHHHHHhhcCCceEEEEeecceecC
Confidence            5555432   78899999887431    2334556666652112 4688888888776

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=96.30  E-value=0.012  Score=53.61  Aligned_cols=76  Identities=17%  Similarity=0.233  Sum_probs=51.3

Q ss_pred             HHhcCcEEEEcCchhHHHHHHHHHHhCC-CcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhC----C
Q 020565           28 RLSKSHILVCGMKGTVAEFCKNIVLAGV-GSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFN----P  102 (324)
Q Consensus        28 ~l~~~~VliiG~g~lGsei~k~L~~~Gv-~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~ln----p  102 (324)
                      +++..+|.|||+|.+|..++..|+..|. .++.++|-+                      ..|++..+..+....    .
T Consensus         3 ~m~~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~----------------------~~~~~g~~~dl~~~~~~~~~   60 (317)
T 3d0o_A            3 KFKGNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLD----------------------TEKVRGDVMDLKHATPYSPT   60 (317)
T ss_dssp             -CCCCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSC----------------------HHHHHHHHHHHHHHGGGSSS
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCC----------------------hhHhhhhhhhHHhhhhhcCC
Confidence            4566799999999999999999999986 678888862                      223333333333322    3


Q ss_pred             CCeEeEeeCCCCCCchhhcCCccEEEEcCC
Q 020565          103 MVRVSVEKGDLSSLDGEFYDKFDVVVVSCC  132 (324)
Q Consensus       103 ~v~v~~~~~~~~~~~~~~~~~~diVi~~~~  132 (324)
                      .+++..  .     ..+.++++|+||.+..
T Consensus        61 ~~~v~~--~-----~~~a~~~aDvVvi~ag   83 (317)
T 3d0o_A           61 TVRVKA--G-----EYSDCHDADLVVICAG   83 (317)
T ss_dssp             CCEEEE--C-----CGGGGTTCSEEEECCC
T ss_pred             CeEEEe--C-----CHHHhCCCCEEEECCC
Confidence            344443  1     1445889999999875

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=96.29  E-value=0.0071  Score=54.80  Aligned_cols=33  Identities=12%  Similarity=0.104  Sum_probs=29.0

Q ss_pred             CcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCc
Q 020565           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV   65 (324)
Q Consensus        32 ~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~   65 (324)
                      .+|+|+|+|++|+.++..|+++|. .+++++.+.
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~-~V~~~~r~~   35 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQRSGE-DVHFLLRRD   35 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHHHTSC-CEEEECSTT
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCC-eEEEEEcCc
Confidence            589999999999999999999996 599988754

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=96.28  E-value=0.011  Score=53.06  Aligned_cols=34  Identities=15%  Similarity=0.116  Sum_probs=30.0

Q ss_pred             cCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCc
Q 020565           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV   65 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~   65 (324)
                      ..+|.|||+|.+|..++++|+..|. +++++|.+.
T Consensus        15 ~~~I~vIG~G~mG~~~A~~l~~~G~-~V~~~dr~~   48 (296)
T 3qha_A           15 QLKLGYIGLGNMGAPMATRMTEWPG-GVTVYDIRI   48 (296)
T ss_dssp             CCCEEEECCSTTHHHHHHHHTTSTT-CEEEECSST
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCC-eEEEEeCCH
Confidence            4689999999999999999999997 488888744

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=96.28  E-value=0.013  Score=53.54  Aligned_cols=35  Identities=11%  Similarity=0.121  Sum_probs=30.9

Q ss_pred             hcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (324)
Q Consensus        30 ~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d   64 (324)
                      ...+|.|+|+|.+|+.++..|+..|...++++|-+
T Consensus        13 ~~~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~   47 (328)
T 2hjr_A           13 MRKKISIIGAGQIGSTIALLLGQKDLGDVYMFDII   47 (328)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECC
Confidence            44689999999999999999999999559999873

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=96.28  E-value=0.0074  Score=57.94  Aligned_cols=86  Identities=19%  Similarity=0.168  Sum_probs=60.1

Q ss_pred             CcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEeeC
Q 020565           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKG  111 (324)
Q Consensus        32 ~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~~  111 (324)
                      .||+|+|+|.+|..+|+.|...|.. ++++|.|.                      .+.+    ++.+..   .+.+...
T Consensus         4 M~iiI~G~G~vG~~la~~L~~~~~~-v~vId~d~----------------------~~~~----~~~~~~---~~~~i~G   53 (461)
T 4g65_A            4 MKIIILGAGQVGGTLAENLVGENND-ITIVDKDG----------------------DRLR----ELQDKY---DLRVVNG   53 (461)
T ss_dssp             EEEEEECCSHHHHHHHHHTCSTTEE-EEEEESCH----------------------HHHH----HHHHHS---SCEEEES
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCC-EEEEECCH----------------------HHHH----HHHHhc---CcEEEEE
Confidence            4799999999999999999999965 99998832                      2222    222211   2233333


Q ss_pred             CCCC---CchhhcCCccEEEEcCCCHHHHHHHHHHHHhc
Q 020565          112 DLSS---LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKL  147 (324)
Q Consensus       112 ~~~~---~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~  147 (324)
                      +.+.   +...-++++|++|.++++.++...+...++++
T Consensus        54 d~~~~~~L~~Agi~~ad~~ia~t~~De~Nl~~~~~Ak~~   92 (461)
T 4g65_A           54 HASHPDVLHEAGAQDADMLVAVTNTDETNMAACQVAFTL   92 (461)
T ss_dssp             CTTCHHHHHHHTTTTCSEEEECCSCHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHhcCCCcCCEEEEEcCChHHHHHHHHHHHHh
Confidence            3332   22445689999999999999888888888763

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=96.27  E-value=0.023  Score=50.82  Aligned_cols=31  Identities=19%  Similarity=0.273  Sum_probs=28.0

Q ss_pred             CcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        32 ~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      .+|+|||+|.+|+.++..|+..|. +++++|.
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~r   34 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIMLHQGGN-DVTLIDQ   34 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECS
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCC-cEEEEEC
Confidence            479999999999999999999996 5888876

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=96.26  E-value=0.0085  Score=53.56  Aligned_cols=45  Identities=18%  Similarity=0.299  Sum_probs=38.0

Q ss_pred             HHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCC
Q 020565           28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWS   72 (324)
Q Consensus        28 ~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~   72 (324)
                      .++.++|+|+|+||.|..++..|...|++++++++.+.-....+.
T Consensus       114 ~l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la  158 (277)
T 3don_A          114 GIEDAYILILGAGGASKGIANELYKIVRPTLTVANRTMSRFNNWS  158 (277)
T ss_dssp             TGGGCCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCGGGGTTCC
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHH
Confidence            367899999999999999999999999999999988654444443

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=96.26  E-value=0.038  Score=49.71  Aligned_cols=110  Identities=11%  Similarity=-0.031  Sum_probs=65.3

Q ss_pred             HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEe
Q 020565           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS  107 (324)
Q Consensus        29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~  107 (324)
                      +++.+|+|.|+ |.+|+.+++.|+..|. ++++++.                      ...+.+.+.+.+.+..+ -+++
T Consensus         9 ~~~~~vlVTGatG~iG~~l~~~L~~~g~-~V~~~~r----------------------~~~~~~~~~~~~~~~~~-~~~~   64 (342)
T 1y1p_A            9 PEGSLVLVTGANGFVASHVVEQLLEHGY-KVRGTAR----------------------SASKLANLQKRWDAKYP-GRFE   64 (342)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEES----------------------SHHHHHHHHHHHHHHST-TTEE
T ss_pred             CCCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeC----------------------CcccHHHHHHHhhccCC-CceE
Confidence            45678999997 8999999999999996 4666654                      22233333444443332 1344


Q ss_pred             Ee-eCCCCC--CchhhcCCccEEEEcCCC------HH--------HHHHHHHHHHhccCC-ccEEEeeecCceE
Q 020565          108 VE-KGDLSS--LDGEFYDKFDVVVVSCCS------VT--------TKKLINEKCRKLSKR-VAFYTVDCRDSCG  163 (324)
Q Consensus       108 ~~-~~~~~~--~~~~~~~~~diVi~~~~~------~~--------~~~~l~~~~~~~~~~-ip~i~~~~~G~~g  163 (324)
                      .. ..++.+  .....++++|+||.+...      +.        ....+-+.|++. .+ ..+|++++.+.+|
T Consensus        65 ~~~~~D~~d~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~n~~g~~~ll~~~~~~-~~~~~iv~~SS~~~~~  137 (342)
T 1y1p_A           65 TAVVEDMLKQGAYDEVIKGAAGVAHIASVVSFSNKYDEVVTPAIGGTLNALRAAAAT-PSVKRFVLTSSTVSAL  137 (342)
T ss_dssp             EEECSCTTSTTTTTTTTTTCSEEEECCCCCSCCSCHHHHHHHHHHHHHHHHHHHHTC-TTCCEEEEECCGGGTC
T ss_pred             EEEecCCcChHHHHHHHcCCCEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhC-CCCcEEEEeccHHHhc
Confidence            44 344443  234556789999987532      22        123445666531 23 4577777765543

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=96.25  E-value=0.01  Score=52.70  Aligned_cols=75  Identities=15%  Similarity=0.188  Sum_probs=50.9

Q ss_pred             HhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeE
Q 020565           29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV  108 (324)
Q Consensus        29 l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~  108 (324)
                      ++.++|+|+|+|++|..++..|+..| .+++++|.                      ...|++.+++.+....   .+..
T Consensus       117 l~~k~vlViGaGg~g~a~a~~L~~~G-~~V~v~~R----------------------~~~~~~~la~~~~~~~---~~~~  170 (271)
T 1nyt_A          117 RPGLRILLIGAGGASRGVLLPLLSLD-CAVTITNR----------------------TVSRAEELAKLFAHTG---SIQA  170 (271)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTT-CEEEEECS----------------------SHHHHHHHHHHTGGGS---SEEE
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHcC-CEEEEEEC----------------------CHHHHHHHHHHhhccC---CeeE
Confidence            46789999999999999999999999 67988765                      3345555555554321   1222


Q ss_pred             eeCCCCCCchhhcCCccEEEEcCCCH
Q 020565          109 EKGDLSSLDGEFYDKFDVVVVSCCSV  134 (324)
Q Consensus       109 ~~~~~~~~~~~~~~~~diVi~~~~~~  134 (324)
                      .  ++.+. .+  ..+|+||.++...
T Consensus       171 ~--~~~~~-~~--~~~DivVn~t~~~  191 (271)
T 1nyt_A          171 L--SMDEL-EG--HEFDLIINATSSG  191 (271)
T ss_dssp             C--CSGGG-TT--CCCSEEEECCSCG
T ss_pred             e--cHHHh-cc--CCCCEEEECCCCC
Confidence            1  11111 11  5899999998754

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=96.25  E-value=0.0086  Score=55.49  Aligned_cols=98  Identities=10%  Similarity=0.007  Sum_probs=59.5

Q ss_pred             cCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhC----CCCeE
Q 020565           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFN----PMVRV  106 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~ln----p~v~v  106 (324)
                      ..+|.|||+|.+|+.++..|+..|. .++++|.+.-                      +++.+.+.  ..|    |.+.+
T Consensus        29 ~mkI~VIGaG~mG~alA~~La~~G~-~V~l~~r~~~----------------------~~~~i~~~--~~~~~~l~g~~l   83 (356)
T 3k96_A           29 KHPIAILGAGSWGTALALVLARKGQ-KVRLWSYESD----------------------HVDEMQAE--GVNNRYLPNYPF   83 (356)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHTTTC-CEEEECSCHH----------------------HHHHHHHH--SSBTTTBTTCCC
T ss_pred             CCeEEEECccHHHHHHHHHHHHCCC-eEEEEeCCHH----------------------HHHHHHHc--CCCcccCCCCcc
Confidence            4589999999999999999999996 4888877321                      22221111  011    22211


Q ss_pred             eEeeCCC--CCCchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEe
Q 020565          107 SVEKGDL--SSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTV  156 (324)
Q Consensus       107 ~~~~~~~--~~~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~  156 (324)
                         ...+  .....+.++++|+||.+.-+...+..+.++...++.+.++|++
T Consensus        84 ---~~~i~~t~d~~ea~~~aDvVilaVp~~~~~~vl~~i~~~l~~~~ivvs~  132 (356)
T 3k96_A           84 ---PETLKAYCDLKASLEGVTDILIVVPSFAFHEVITRMKPLIDAKTRIAWG  132 (356)
T ss_dssp             ---CTTEEEESCHHHHHTTCCEEEECCCHHHHHHHHHHHGGGCCTTCEEEEC
T ss_pred             ---CCCeEEECCHHHHHhcCCEEEECCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence               0001  1223456788999999987766666666655443345555544

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A

Probab=96.24  E-value=0.0012  Score=60.28  Aligned_cols=50  Identities=12%  Similarity=0.108  Sum_probs=37.8

Q ss_pred             hHHHHHh--hhHHHHHHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565           14 YDRQIRV--WGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (324)
Q Consensus        14 y~Rqi~l--~g~~~q~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d   64 (324)
                      |+++.+-  |.......|..++|.|||+|.+|..+|+.|...|.. +..+|..
T Consensus       120 ~~~~~~~g~W~~~~~~~l~g~tvGIiG~G~IG~~vA~~l~~~G~~-V~~~dr~  171 (315)
T 3pp8_A          120 YQALKNQALWKPLPEYTREEFSVGIMGAGVLGAKVAESLQAWGFP-LRCWSRS  171 (315)
T ss_dssp             HHHHHHTTCCCCCCCCCSTTCCEEEECCSHHHHHHHHHHHTTTCC-EEEEESS
T ss_pred             HHHHHHhcccCCCCCCCcCCCEEEEEeeCHHHHHHHHHHHHCCCE-EEEEcCC
Confidence            4444432  533223468899999999999999999999999985 7888763

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=96.24  E-value=0.0064  Score=54.48  Aligned_cols=33  Identities=18%  Similarity=0.190  Sum_probs=29.2

Q ss_pred             cCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d   64 (324)
                      ..+|.|||+|.+|+.++++|...|. +++++|.+
T Consensus         4 ~~~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~~~   36 (301)
T 3cky_A            4 SIKIGFIGLGAMGKPMAINLLKEGV-TVYAFDLM   36 (301)
T ss_dssp             CCEEEEECCCTTHHHHHHHHHHTTC-EEEEECSS
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCC-eEEEEeCC
Confidence            3589999999999999999999997 58888864

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=96.23  E-value=0.021  Score=50.86  Aligned_cols=88  Identities=11%  Similarity=0.111  Sum_probs=56.5

Q ss_pred             CcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEee
Q 020565           32 SHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEK  110 (324)
Q Consensus        32 ~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~  110 (324)
                      .+|.|||+ |.+|+.+++.|...|. +++++|.                      ...+++.+.    +.  .+.+    
T Consensus        12 m~I~iIG~tG~mG~~la~~l~~~g~-~V~~~~r----------------------~~~~~~~~~----~~--g~~~----   58 (286)
T 3c24_A           12 KTVAILGAGGKMGARITRKIHDSAH-HLAAIEI----------------------APEGRDRLQ----GM--GIPL----   58 (286)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHSSS-EEEEECC----------------------SHHHHHHHH----HT--TCCC----
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCC-EEEEEEC----------------------CHHHHHHHH----hc--CCCc----
Confidence            47999999 9999999999999996 5777765                      222333222    21  1211    


Q ss_pred             CCCCCCchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEe
Q 020565          111 GDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTV  156 (324)
Q Consensus       111 ~~~~~~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~  156 (324)
                         . ...+.++++|+||.|.-+......+.++...+..+..+++.
T Consensus        59 ---~-~~~~~~~~aDvVi~av~~~~~~~v~~~l~~~l~~~~ivv~~  100 (286)
T 3c24_A           59 ---T-DGDGWIDEADVVVLALPDNIIEKVAEDIVPRVRPGTIVLIL  100 (286)
T ss_dssp             ---C-CSSGGGGTCSEEEECSCHHHHHHHHHHHGGGSCTTCEEEES
T ss_pred             ---C-CHHHHhcCCCEEEEcCCchHHHHHHHHHHHhCCCCCEEEEC
Confidence               1 12345678999999997766665666554432245556653

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=96.21  E-value=0.019  Score=47.71  Aligned_cols=100  Identities=16%  Similarity=0.033  Sum_probs=59.6

Q ss_pred             cCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEe
Q 020565           31 KSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVE  109 (324)
Q Consensus        31 ~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~  109 (324)
                      +.+|+|.|+ |++|..+++.|...|. ++++++.+.-....+              .              .+  .++..
T Consensus         3 ~~~ilVtGatG~iG~~l~~~l~~~g~-~V~~~~r~~~~~~~~--------------~--------------~~--~~~~~   51 (206)
T 1hdo_A            3 VKKIAIFGATGQTGLTTLAQAVQAGY-EVTVLVRDSSRLPSE--------------G--------------PR--PAHVV   51 (206)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCGGGSCSS--------------S--------------CC--CSEEE
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCCC-eEEEEEeChhhcccc--------------c--------------CC--ceEEE
Confidence            368999998 8999999999999995 588877643211100              0              11  22233


Q ss_pred             eCCCCC--CchhhcCCccEEEEcCCCH----------HHHHHHHHHHHhccCCc-cEEEeeecCceE
Q 020565          110 KGDLSS--LDGEFYDKFDVVVVSCCSV----------TTKKLINEKCRKLSKRV-AFYTVDCRDSCG  163 (324)
Q Consensus       110 ~~~~~~--~~~~~~~~~diVi~~~~~~----------~~~~~l~~~~~~~~~~i-p~i~~~~~G~~g  163 (324)
                      ..++.+  .....++++|+||.+....          .....+-+.|++  .++ .+|..++.+.++
T Consensus        52 ~~D~~~~~~~~~~~~~~d~vi~~a~~~~~~~~~~~n~~~~~~~~~~~~~--~~~~~~v~~Ss~~~~~  116 (206)
T 1hdo_A           52 VGDVLQAADVDKTVAGQDAVIVLLGTRNDLSPTTVMSEGARNIVAAMKA--HGVDKVVACTSAFLLW  116 (206)
T ss_dssp             ESCTTSHHHHHHHHTTCSEEEECCCCTTCCSCCCHHHHHHHHHHHHHHH--HTCCEEEEECCGGGTS
T ss_pred             EecCCCHHHHHHHHcCCCEEEECccCCCCCCccchHHHHHHHHHHHHHH--hCCCeEEEEeeeeecc
Confidence            334433  1234566778888775421          234456667776  444 466666665443

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=96.21  E-value=0.011  Score=52.55  Aligned_cols=74  Identities=11%  Similarity=0.252  Sum_probs=51.9

Q ss_pred             HhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeE
Q 020565           29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV  108 (324)
Q Consensus        29 l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~  108 (324)
                      ++.++|+|+|+|++|..++..|+..| .++++++.                      ...|++.+++.+....   .+..
T Consensus       117 ~~~~~vlvlGaGg~g~a~a~~L~~~G-~~v~v~~R----------------------~~~~a~~l~~~~~~~~---~~~~  170 (272)
T 1p77_A          117 RPNQHVLILGAGGATKGVLLPLLQAQ-QNIVLANR----------------------TFSKTKELAERFQPYG---NIQA  170 (272)
T ss_dssp             CTTCEEEEECCSHHHHTTHHHHHHTT-CEEEEEES----------------------SHHHHHHHHHHHGGGS---CEEE
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCC-CEEEEEEC----------------------CHHHHHHHHHHccccC---CeEE
Confidence            46789999999999999999999999 78999866                      4446777776665421   1222


Q ss_pred             eeCCCCCCchhhc-CCccEEEEcCCCH
Q 020565          109 EKGDLSSLDGEFY-DKFDVVVVSCCSV  134 (324)
Q Consensus       109 ~~~~~~~~~~~~~-~~~diVi~~~~~~  134 (324)
                      ..  +    ++.- .++|+||.++...
T Consensus       171 ~~--~----~~~~~~~~DivIn~t~~~  191 (272)
T 1p77_A          171 VS--M----DSIPLQTYDLVINATSAG  191 (272)
T ss_dssp             EE--G----GGCCCSCCSEEEECCCC-
T ss_pred             ee--H----HHhccCCCCEEEECCCCC
Confidence            11  1    1111 3899999998653

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=96.20  E-value=0.0055  Score=54.92  Aligned_cols=36  Identities=8%  Similarity=0.094  Sum_probs=32.9

Q ss_pred             HhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565           29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (324)
Q Consensus        29 l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d   64 (324)
                      ++.++++|+|+||.|..++..|...|++++++++.+
T Consensus       120 ~~~k~vlvlGaGGaaraia~~L~~~G~~~v~v~nRt  155 (282)
T 3fbt_A          120 IKNNICVVLGSGGAARAVLQYLKDNFAKDIYVVTRN  155 (282)
T ss_dssp             CTTSEEEEECSSTTHHHHHHHHHHTTCSEEEEEESC
T ss_pred             ccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            567899999999999999999999999999998763

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=96.20  E-value=0.012  Score=53.63  Aligned_cols=35  Identities=17%  Similarity=0.099  Sum_probs=31.6

Q ss_pred             hcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (324)
Q Consensus        30 ~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d   64 (324)
                      +..+|.|+|+|.+|+.++..|+..|+++++++|.+
T Consensus         7 ~~~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~   41 (315)
T 3tl2_A            7 KRKKVSVIGAGFTGATTAFLLAQKELADVVLVDIP   41 (315)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCG
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEecc
Confidence            45689999999999999999999999789999873

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=96.19  E-value=0.0098  Score=57.37  Aligned_cols=125  Identities=15%  Similarity=0.142  Sum_probs=64.9

Q ss_pred             HHHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhh-CCCC
Q 020565           26 QRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDF-NPMV  104 (324)
Q Consensus        26 q~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~l-np~v  104 (324)
                      ...+.+++|.|||+|.+|+.++.+|+..|. +++++|.+.-....+....  . + -   |-.-+....+.++.+ .+++
T Consensus        10 ~~~~~~~~IgvIGlG~MG~~lA~~La~~G~-~V~v~~r~~~~~~~l~~~~--~-~-~---gi~~~~s~~e~v~~l~~aDv   81 (480)
T 2zyd_A           10 HHHMSKQQIGVVGMAVMGRNLALNIESRGY-TVSIFNRSREKTEEVIAEN--P-G-K---KLVPYYTVKEFVESLETPRR   81 (480)
T ss_dssp             -----CBSEEEECCSHHHHHHHHHHHTTTC-CEEEECSSHHHHHHHHHHS--T-T-S---CEEECSSHHHHHHTBCSSCE
T ss_pred             ccccCCCeEEEEccHHHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHhhC--C-C-C---CeEEeCCHHHHHhCCCCCCE
Confidence            456888999999999999999999999998 4889887532222221110  0 0 0   100001112222322 1444


Q ss_pred             eEeEeeCC--CCCCc---hhhcCCccEEEEcCCC-HHHHHHHHHHHHhccCCccEEEeeecC
Q 020565          105 RVSVEKGD--LSSLD---GEFYDKFDVVVVSCCS-VTTKKLINEKCRKLSKRVAFYTVDCRD  160 (324)
Q Consensus       105 ~v~~~~~~--~~~~~---~~~~~~~diVi~~~~~-~~~~~~l~~~~~~~~~~ip~i~~~~~G  160 (324)
                      -+...+..  +.+..   ...++.-++||++... +.....+.+.+.+  .++.++.+...|
T Consensus        82 Vil~Vp~~~~v~~vl~~l~~~l~~g~iIId~s~g~~~~t~~l~~~l~~--~g~~~v~~pv~g  141 (480)
T 2zyd_A           82 ILLMVKAGAGTDAAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSA--EGFNFIGTGVSG  141 (480)
T ss_dssp             EEECSCSSSHHHHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHH--TTCEEEEEEEES
T ss_pred             EEEECCCHHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHH--CCCCeeCCcccc
Confidence            44333321  11111   2234455677777654 3344455677766  677777665543

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=96.16  E-value=0.0077  Score=56.78  Aligned_cols=35  Identities=23%  Similarity=0.326  Sum_probs=32.5

Q ss_pred             HhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565           29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        29 l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      +...+|+|+|+|++|..+++.|...|+++++++|.
T Consensus       165 l~g~~VlIiGaG~iG~~~a~~l~~~G~~~V~v~~r  199 (404)
T 1gpj_A          165 LHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANR  199 (404)
T ss_dssp             CTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECS
T ss_pred             ccCCEEEEEChHHHHHHHHHHHHHCCCCEEEEEeC
Confidence            57899999999999999999999999988999876

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=96.16  E-value=0.013  Score=54.00  Aligned_cols=77  Identities=13%  Similarity=0.089  Sum_probs=53.4

Q ss_pred             HhcCcEEEEcC-chhHHHHHHHHHHhCC-CcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhh-CCCCe
Q 020565           29 LSKSHILVCGM-KGTVAEFCKNIVLAGV-GSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDF-NPMVR  105 (324)
Q Consensus        29 l~~~~VliiG~-g~lGsei~k~L~~~Gv-~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~l-np~v~  105 (324)
                      +...||.|+|+ |.+|+.++..|+..|. .+++++|-                      .+.|++..+.-|+.. .|..+
T Consensus         6 ~~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi----------------------~~~k~~g~a~DL~~~~~~~~~   63 (343)
T 3fi9_A            6 LTEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDP----------------------FAVGLEGVAEEIRHCGFEGLN   63 (343)
T ss_dssp             SCSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECS----------------------CHHHHHHHHHHHHHHCCTTCC
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeC----------------------CchhHHHHHHhhhhCcCCCCc
Confidence            45679999997 9999999999999997 57999886                      334555545555543 23223


Q ss_pred             EeEeeCCCCCCchhhcCCccEEEEcCC
Q 020565          106 VSVEKGDLSSLDGEFYDKFDVVVVSCC  132 (324)
Q Consensus       106 v~~~~~~~~~~~~~~~~~~diVi~~~~  132 (324)
                      +...     ....+.++++|+||.+..
T Consensus        64 i~~t-----~d~~~al~dADvVvitaG   85 (343)
T 3fi9_A           64 LTFT-----SDIKEALTDAKYIVSSGG   85 (343)
T ss_dssp             CEEE-----SCHHHHHTTEEEEEECCC
T ss_pred             eEEc-----CCHHHHhCCCCEEEEccC
Confidence            3221     222455889999998865

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=96.13  E-value=0.022  Score=50.19  Aligned_cols=33  Identities=21%  Similarity=0.225  Sum_probs=30.3

Q ss_pred             HhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565           29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        29 l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      ++. +|+|||+|++|..+++.|...|+ +++++|.
T Consensus       115 l~~-~v~iiG~G~~g~~~a~~l~~~g~-~v~v~~r  147 (263)
T 2d5c_A          115 LKG-PALVLGAGGAGRAVAFALREAGL-EVWVWNR  147 (263)
T ss_dssp             CCS-CEEEECCSHHHHHHHHHHHHTTC-CEEEECS
T ss_pred             CCC-eEEEECCcHHHHHHHHHHHHCCC-EEEEEEC
Confidence            566 99999999999999999999998 7999876

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}

Probab=96.12  E-value=0.012  Score=54.14  Aligned_cols=105  Identities=15%  Similarity=0.151  Sum_probs=59.5

Q ss_pred             HhHHHHHh--hhHH-HH---HHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCC
Q 020565           13 LYDRQIRV--WGAD-AQ---RRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGG   86 (324)
Q Consensus        13 ry~Rqi~l--~g~~-~q---~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G   86 (324)
                      .|+|+++-  |... ..   ..|..++|.|||+|.+|..+|+.|...|.. +..+|...-.             ..   +
T Consensus       147 ~~~~~~~~g~W~~~~~~~~~~~l~gktiGIIGlG~IG~~vA~~l~~~G~~-V~~~dr~~~~-------------~~---~  209 (340)
T 4dgs_A          147 DGDRLVREGRWAAGEQLPLGHSPKGKRIGVLGLGQIGRALASRAEAFGMS-VRYWNRSTLS-------------GV---D  209 (340)
T ss_dssp             HHHHHHHTTCC------CCCCCCTTCEEEEECCSHHHHHHHHHHHTTTCE-EEEECSSCCT-------------TS---C
T ss_pred             HHHHHHhcCCcccccCcCccccccCCEEEEECCCHHHHHHHHHHHHCCCE-EEEEcCCccc-------------cc---C
Confidence            34555554  6543 11   468899999999999999999999999984 7777763211             11   1


Q ss_pred             ccHHHHHHHHHHhhCCCCeEeEeeCCCCCCchhhcCCccEEEEcCC-CHHHHHHHHH-HHHhccCCccEEEeee
Q 020565           87 KTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEFYDKFDVVVVSCC-SVTTKKLINE-KCRKLSKRVAFYTVDC  158 (324)
Q Consensus        87 ~~ka~~~~~~l~~lnp~v~v~~~~~~~~~~~~~~~~~~diVi~~~~-~~~~~~~l~~-~~~~~~~~ip~i~~~~  158 (324)
                      .                 .  .     ....++.++++|+|+.+.- +.+++..+++ ....++.+..+|+++.
T Consensus       210 ~-----------------~--~-----~~sl~ell~~aDvVil~vP~t~~t~~li~~~~l~~mk~gailIN~aR  259 (340)
T 4dgs_A          210 W-----------------I--A-----HQSPVDLARDSDVLAVCVAASAATQNIVDASLLQALGPEGIVVNVAR  259 (340)
T ss_dssp             C-----------------E--E-----CSSHHHHHHTCSEEEECC----------CHHHHHHTTTTCEEEECSC
T ss_pred             c-----------------e--e-----cCCHHHHHhcCCEEEEeCCCCHHHHHHhhHHHHhcCCCCCEEEECCC
Confidence            0                 0  0     1123567888999988874 5556656533 3333335666676653

>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae}

Probab=96.12  E-value=0.026  Score=50.38  Aligned_cols=87  Identities=21%  Similarity=0.232  Sum_probs=63.9

Q ss_pred             HHHHHHhcCcEEEEcC-chhHHHHHHHHHHhCCC--cEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhh
Q 020565           24 DAQRRLSKSHILVCGM-KGTVAEFCKNIVLAGVG--SLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDF  100 (324)
Q Consensus        24 ~~q~~l~~~~VliiG~-g~lGsei~k~L~~~Gv~--~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~l  100 (324)
                      .....|++++++|.|+ ||+|.++++.|+..|.+  ++.++|.                      ...+.+.+++.+.+.
T Consensus        26 ~~~~~l~~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r----------------------~~~~~~~~~~~l~~~   83 (287)
T 3rku_A           26 KAAERLAKKTVLITGASAGIGKATALEYLEASNGDMKLILAAR----------------------RLEKLEELKKTIDQE   83 (287)
T ss_dssp             HHHHHHTTCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEES----------------------CHHHHHHHHHHHHHH
T ss_pred             cchhhcCCCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEEC----------------------CHHHHHHHHHHHHhh
Confidence            3456789999999996 78999999999999875  6777654                      334667777888888


Q ss_pred             CCCCeEeEeeCCCCCC--chh-------hcCCccEEEEcCC
Q 020565          101 NPMVRVSVEKGDLSSL--DGE-------FYDKFDVVVVSCC  132 (324)
Q Consensus       101 np~v~v~~~~~~~~~~--~~~-------~~~~~diVi~~~~  132 (324)
                      +|..++.....++.+.  ...       .+...|++|.+..
T Consensus        84 ~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lVnnAG  124 (287)
T 3rku_A           84 FPNAKVHVAQLDITQAEKIKPFIENLPQEFKDIDILVNNAG  124 (287)
T ss_dssp             CTTCEEEEEECCTTCGGGHHHHHHTSCGGGCSCCEEEECCC
T ss_pred             CCCCeEEEEECCCCCHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence            8777888877777642  122       2346899987653

>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*

Probab=96.12  E-value=0.029  Score=50.48  Aligned_cols=72  Identities=13%  Similarity=0.078  Sum_probs=51.2

Q ss_pred             cEEEEcCchhHHHHHHHHHHhCC-CcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhh----CCCCeEe
Q 020565           33 HILVCGMKGTVAEFCKNIVLAGV-GSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDF----NPMVRVS  107 (324)
Q Consensus        33 ~VliiG~g~lGsei~k~L~~~Gv-~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~l----np~v~v~  107 (324)
                      ||.|||+|.+|+.++..|+..|. +++.|+|-                      .+.|++..+--|...    +...++.
T Consensus         2 KV~IiGaG~VG~~~a~~l~~~~~~~el~L~Di----------------------~~~~~~G~a~DL~h~~~~~~~~~~i~   59 (294)
T 2x0j_A            2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDI----------------------AEDLAVGEAMDLAHAAAGIDKYPKIV   59 (294)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSCCSEEEEECS----------------------SHHHHHHHHHHHHHHHGGGTCCCEEE
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCCEEEEEeC----------------------CCCcchhhhhhhhcccccCCCCCeEe
Confidence            69999999999999999999886 78999875                      334555555566653    3233333


Q ss_pred             EeeCCCCCCchhhcCCccEEEEcCC
Q 020565          108 VEKGDLSSLDGEFYDKFDVVVVSCC  132 (324)
Q Consensus       108 ~~~~~~~~~~~~~~~~~diVi~~~~  132 (324)
                      ...      ..+.+++.|+||.+..
T Consensus        60 ~~~------d~~~~~~aDvVvitAG   78 (294)
T 2x0j_A           60 GGA------DYSLLKGSEIIVVTAG   78 (294)
T ss_dssp             EES------CGGGGTTCSEEEECCC
T ss_pred             cCC------CHHHhCCCCEEEEecC
Confidence            321      1345889999998875

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=96.08  E-value=0.0079  Score=57.82  Aligned_cols=37  Identities=11%  Similarity=0.038  Sum_probs=29.5

Q ss_pred             HHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565           28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (324)
Q Consensus        28 ~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d   64 (324)
                      .++.++|+|+|+|++|..++..|+..|--+++++|.+
T Consensus        20 ~l~~k~VlIiGAGgiG~aia~~L~~~~g~~V~v~~R~   56 (467)
T 2axq_A           20 RHMGKNVLLLGSGFVAQPVIDTLAANDDINVTVACRT   56 (467)
T ss_dssp             ---CEEEEEECCSTTHHHHHHHHHTSTTEEEEEEESS
T ss_pred             CCCCCEEEEECChHHHHHHHHHHHhCCCCeEEEEECC
Confidence            4667789999999999999999999843369998874

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=96.07  E-value=0.0035  Score=57.42  Aligned_cols=32  Identities=16%  Similarity=0.290  Sum_probs=29.0

Q ss_pred             cCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      ..+|+|||+|++|+.++..|+.+|. .++++|.
T Consensus         3 ~mkI~IiGaG~~G~~~a~~L~~~g~-~V~~~~r   34 (335)
T 3ghy_A            3 LTRICIVGAGAVGGYLGARLALAGE-AINVLAR   34 (335)
T ss_dssp             CCCEEEESCCHHHHHHHHHHHHTTC-CEEEECC
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCC-EEEEEEC
Confidence            4689999999999999999999997 5888876

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=96.06  E-value=0.024  Score=51.06  Aligned_cols=72  Identities=11%  Similarity=0.010  Sum_probs=49.5

Q ss_pred             cEEEEcCchhHHHHHHHHHHhCCC-cEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhC----CCCeEe
Q 020565           33 HILVCGMKGTVAEFCKNIVLAGVG-SLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFN----PMVRVS  107 (324)
Q Consensus        33 ~VliiG~g~lGsei~k~L~~~Gv~-~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~ln----p~v~v~  107 (324)
                      +|.|+|+|.+|+.++..|+..|.. +++++|-                      ...|++..+-.++..+    ...++.
T Consensus         2 kI~ViGaG~vG~~la~~l~~~~~~~~v~L~D~----------------------~~~~~~g~~~dl~~~~~~~~~~~~i~   59 (294)
T 1oju_A            2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDI----------------------AEDLAVGEAMDLAHAAAGIDKYPKIV   59 (294)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSCCSEEEEECS----------------------SHHHHHHHHHHHHHHHHTTTCCCEEE
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCeEEEEEC----------------------ChHHHHHHHHHHHhhhhhcCCCCEEE
Confidence            799999999999999999999974 7999886                      2223433333344433    234444


Q ss_pred             EeeCCCCCCchhhcCCccEEEEcCC
Q 020565          108 VEKGDLSSLDGEFYDKFDVVVVSCC  132 (324)
Q Consensus       108 ~~~~~~~~~~~~~~~~~diVi~~~~  132 (324)
                      ...     . .+.++++|+||.+..
T Consensus        60 ~t~-----d-~~a~~~aDiVViaag   78 (294)
T 1oju_A           60 GGA-----D-YSLLKGSEIIVVTAG   78 (294)
T ss_dssp             EES-----C-GGGGTTCSEEEECCC
T ss_pred             EeC-----C-HHHhCCCCEEEECCC
Confidence            321     1 456789999998864

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=96.05  E-value=0.04  Score=50.34  Aligned_cols=78  Identities=13%  Similarity=0.161  Sum_probs=54.1

Q ss_pred             HhcCcEEEEcC-chhHHHHHHHHHHh-CCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeE
Q 020565           29 LSKSHILVCGM-KGTVAEFCKNIVLA-GVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRV  106 (324)
Q Consensus        29 l~~~~VliiG~-g~lGsei~k~L~~~-Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v  106 (324)
                      +++++|+|.|+ |++|+.+++.|+.. |..++++++.                      ...+.+.+.+.+.    ...+
T Consensus        19 ~~~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r----------------------~~~~~~~~~~~~~----~~~v   72 (344)
T 2gn4_A           19 LDNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSR----------------------DELKQSEMAMEFN----DPRM   72 (344)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEES----------------------CHHHHHHHHHHHC----CTTE
T ss_pred             hCCCEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEEC----------------------ChhhHHHHHHHhc----CCCE
Confidence            56789999995 89999999999999 9877888765                      2223333333332    1345


Q ss_pred             eEeeCCCCCC--chhhcCCccEEEEcCC
Q 020565          107 SVEKGDLSSL--DGEFYDKFDVVVVSCC  132 (324)
Q Consensus       107 ~~~~~~~~~~--~~~~~~~~diVi~~~~  132 (324)
                      .....++.+.  ....++++|+||.+..
T Consensus        73 ~~~~~Dl~d~~~l~~~~~~~D~Vih~Aa  100 (344)
T 2gn4_A           73 RFFIGDVRDLERLNYALEGVDICIHAAA  100 (344)
T ss_dssp             EEEECCTTCHHHHHHHTTTCSEEEECCC
T ss_pred             EEEECCCCCHHHHHHHHhcCCEEEECCC
Confidence            5566666542  3456788999998764

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=96.04  E-value=0.019  Score=48.54  Aligned_cols=30  Identities=7%  Similarity=0.108  Sum_probs=26.8

Q ss_pred             cEEEEc-CchhHHHHHHHHHHhCCCcEEEEcC
Q 020565           33 HILVCG-MKGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        33 ~VliiG-~g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      +|+|+| +|.+|+.+++.|+..|. +++++|.
T Consensus         2 ~i~iiGa~G~~G~~ia~~l~~~g~-~V~~~~r   32 (212)
T 1jay_A            2 RVALLGGTGNLGKGLALRLATLGH-EIVVGSR   32 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTC-EEEEEES
T ss_pred             eEEEEcCCCHHHHHHHHHHHHCCC-EEEEEeC
Confidence            699999 99999999999999996 5877765

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=96.03  E-value=0.022  Score=51.75  Aligned_cols=32  Identities=13%  Similarity=0.206  Sum_probs=26.4

Q ss_pred             HhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEE
Q 020565           29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLM   61 (324)
Q Consensus        29 l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lv   61 (324)
                      ....+|+|||+|++|+.++..|+.+|. .++++
T Consensus        17 ~~~~kI~IiGaGa~G~~~a~~L~~~G~-~V~l~   48 (318)
T 3hwr_A           17 FQGMKVAIMGAGAVGCYYGGMLARAGH-EVILI   48 (318)
T ss_dssp             ---CEEEEESCSHHHHHHHHHHHHTTC-EEEEE
T ss_pred             ccCCcEEEECcCHHHHHHHHHHHHCCC-eEEEE
Confidence            456789999999999999999999996 47776

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=96.02  E-value=0.022  Score=51.70  Aligned_cols=39  Identities=18%  Similarity=0.082  Sum_probs=27.0

Q ss_pred             HHHHHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCC
Q 020565           25 AQRRLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDR   64 (324)
Q Consensus        25 ~q~~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d   64 (324)
                      .++.++..+|+|.|+ |.+|+.+++.|...|.. ++.+|..
T Consensus        13 ~~~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~-V~~~~r~   52 (347)
T 4id9_A           13 GLVPRGSHMILVTGSAGRVGRAVVAALRTQGRT-VRGFDLR   52 (347)
T ss_dssp             --------CEEEETTTSHHHHHHHHHHHHTTCC-EEEEESS
T ss_pred             cccccCCCEEEEECCCChHHHHHHHHHHhCCCE-EEEEeCC
Confidence            457788999999997 88999999999999964 7777653

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=96.00  E-value=0.0072  Score=54.14  Aligned_cols=75  Identities=12%  Similarity=0.159  Sum_probs=51.1

Q ss_pred             HhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhC--C-CCe
Q 020565           29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFN--P-MVR  105 (324)
Q Consensus        29 l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~ln--p-~v~  105 (324)
                      ++.++|+|+|+||+|..+++.|+..|  +++++|.                      ...|++.+++.+....  + .+.
T Consensus       126 l~~k~vlV~GaGgiG~aia~~L~~~G--~V~v~~r----------------------~~~~~~~l~~~~~~~~~~~~~~~  181 (287)
T 1nvt_A          126 VKDKNIVIYGAGGAARAVAFELAKDN--NIIIANR----------------------TVEKAEALAKEIAEKLNKKFGEE  181 (287)
T ss_dssp             CCSCEEEEECCSHHHHHHHHHHTSSS--EEEEECS----------------------SHHHHHHHHHHHHHHHTCCHHHH
T ss_pred             cCCCEEEEECchHHHHHHHHHHHHCC--CEEEEEC----------------------CHHHHHHHHHHHhhhccccccee
Confidence            56789999999999999999999999  7988765                      2335555555554321  0 012


Q ss_pred             EeEeeCCCCCCchhhcCCccEEEEcCCC
Q 020565          106 VSVEKGDLSSLDGEFYDKFDVVVVSCCS  133 (324)
Q Consensus       106 v~~~~~~~~~~~~~~~~~~diVi~~~~~  133 (324)
                      +...+  +    .+.+.++|+||.++..
T Consensus       182 ~d~~~--~----~~~~~~~DilVn~ag~  203 (287)
T 1nvt_A          182 VKFSG--L----DVDLDGVDIIINATPI  203 (287)
T ss_dssp             EEEEC--T----TCCCTTCCEEEECSCT
T ss_pred             EEEee--H----HHhhCCCCEEEECCCC
Confidence            22221  1    3446789999998764

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=96.00  E-value=0.0091  Score=53.40  Aligned_cols=32  Identities=25%  Similarity=0.276  Sum_probs=28.4

Q ss_pred             CcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (324)
Q Consensus        32 ~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d   64 (324)
                      .+|.|||+|.+|..++.+|...|. +++++|.+
T Consensus         6 m~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~~~   37 (299)
T 1vpd_A            6 MKVGFIGLGIMGKPMSKNLLKAGY-SLVVSDRN   37 (299)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTC-EEEEECSC
T ss_pred             ceEEEECchHHHHHHHHHHHhCCC-EEEEEeCC
Confidence            479999999999999999999997 48888764

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=96.00  E-value=0.023  Score=51.33  Aligned_cols=72  Identities=21%  Similarity=0.226  Sum_probs=47.7

Q ss_pred             cEEEEcCchhHHHHHHHHHHhCC-CcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCC---CCeEeE
Q 020565           33 HILVCGMKGTVAEFCKNIVLAGV-GSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNP---MVRVSV  108 (324)
Q Consensus        33 ~VliiG~g~lGsei~k~L~~~Gv-~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp---~v~v~~  108 (324)
                      ||.|+|+|.+|+.++..|+..|. ++++++|.+                      +.|++..+..+...+|   .+++..
T Consensus         2 kI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~----------------------~~~~~~~~~~l~~~~~~~~~~~i~~   59 (304)
T 2v6b_A            2 KVGVVGTGFVGSTAAFALVLRGSCSELVLVDRD----------------------EDRAQAEAEDIAHAAPVSHGTRVWH   59 (304)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSS----------------------HHHHHHHHHHHTTSCCTTSCCEEEE
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCC----------------------HHHHHHHHHhhhhhhhhcCCeEEEE
Confidence            79999999999999999999995 469999873                      2233333333433332   334432


Q ss_pred             eeCCCCCCchhhcCCccEEEEcCCC
Q 020565          109 EKGDLSSLDGEFYDKFDVVVVSCCS  133 (324)
Q Consensus       109 ~~~~~~~~~~~~~~~~diVi~~~~~  133 (324)
                        .   +  .+.++++|+||.+...
T Consensus        60 --~---~--~~a~~~aDvVIi~~~~   77 (304)
T 2v6b_A           60 --G---G--HSELADAQVVILTAGA   77 (304)
T ss_dssp             --E---C--GGGGTTCSEEEECC--
T ss_pred             --C---C--HHHhCCCCEEEEcCCC
Confidence              1   1  2457899999999853

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=95.96  E-value=0.041  Score=53.90  Aligned_cols=88  Identities=17%  Similarity=0.160  Sum_probs=63.6

Q ss_pred             CcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEeeC
Q 020565           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKG  111 (324)
Q Consensus        32 ~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~~  111 (324)
                      .+|+|+|+|.+|..+++.|...|.. ++++|.|.-..+.+.                                  .+...
T Consensus       349 ~~viIiG~G~~G~~la~~L~~~g~~-v~vid~d~~~~~~~~----------------------------------~~i~g  393 (565)
T 4gx0_A          349 ELIFIIGHGRIGCAAAAFLDRKPVP-FILIDRQESPVCNDH----------------------------------VVVYG  393 (565)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCC-EEEEESSCCSSCCSS----------------------------------CEEES
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCC-EEEEECChHHHhhcC----------------------------------CEEEe
Confidence            7899999999999999999999987 999998654332221                                  11111


Q ss_pred             CCCC---CchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEE
Q 020565          112 DLSS---LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFY  154 (324)
Q Consensus       112 ~~~~---~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i  154 (324)
                      +.++   ....-++++|.+|.++++.+....+...+++++.++..|
T Consensus       394 D~t~~~~L~~agi~~ad~vi~~~~~d~~ni~~~~~ak~l~~~~~ii  439 (565)
T 4gx0_A          394 DATVGQTLRQAGIDRASGIIVTTNDDSTNIFLTLACRHLHSHIRIV  439 (565)
T ss_dssp             CSSSSTHHHHHTTTSCSEEEECCSCHHHHHHHHHHHHHHCSSSEEE
T ss_pred             CCCCHHHHHhcCccccCEEEEECCCchHHHHHHHHHHHHCCCCEEE
Confidence            2111   234457899999999999898888889999954433333

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=95.94  E-value=0.011  Score=50.68  Aligned_cols=32  Identities=6%  Similarity=0.087  Sum_probs=27.2

Q ss_pred             cCcEEEEcCchhHHHHHHHHHHhCCCcEEE-EcC
Q 020565           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTL-MDD   63 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~~~Gv~~i~l-vD~   63 (324)
                      -.+|.|||+|.+|..+++.|+..|.. +++ +|.
T Consensus        23 mmkI~IIG~G~mG~~la~~l~~~g~~-V~~v~~r   55 (220)
T 4huj_A           23 MTTYAIIGAGAIGSALAERFTAAQIP-AIIANSR   55 (220)
T ss_dssp             SCCEEEEECHHHHHHHHHHHHHTTCC-EEEECTT
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCE-EEEEECC
Confidence            36899999999999999999999974 665 554

>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}

Probab=95.92  E-value=0.0044  Score=56.44  Aligned_cols=110  Identities=14%  Similarity=0.111  Sum_probs=62.9

Q ss_pred             HhcCcEEEEcC-chhHHHHHHHHHHhCCC-cEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeE
Q 020565           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVG-SLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRV  106 (324)
Q Consensus        29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~-~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v  106 (324)
                      ++..+|+|.|+ |.+|+.+++.|...|.. .++.+|....... .                       +.+..+...-.+
T Consensus        22 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~~~v~~~~~~~~~~~-~-----------------------~~l~~~~~~~~~   77 (346)
T 4egb_A           22 SNAMNILVTGGAGFIGSNFVHYMLQSYETYKIINFDALTYSGN-L-----------------------NNVKSIQDHPNY   77 (346)
T ss_dssp             --CEEEEEETTTSHHHHHHHHHHHHHCTTEEEEEEECCCTTCC-G-----------------------GGGTTTTTCTTE
T ss_pred             cCCCeEEEECCccHHHHHHHHHHHhhCCCcEEEEEeccccccc-h-----------------------hhhhhhccCCCe
Confidence            45678999998 88999999999999943 3555554221110 0                       011122222234


Q ss_pred             eEeeCCCCCC--chhhcCC--ccEEEEcCCCHH-----------------HHHHHHHHHHhccCCcc-EEEeeecCceEE
Q 020565          107 SVEKGDLSSL--DGEFYDK--FDVVVVSCCSVT-----------------TKKLINEKCRKLSKRVA-FYTVDCRDSCGE  164 (324)
Q Consensus       107 ~~~~~~~~~~--~~~~~~~--~diVi~~~~~~~-----------------~~~~l~~~~~~~~~~ip-~i~~~~~G~~g~  164 (324)
                      +....++.+.  ....+++  +|+||.+.....                 ....+-+.|++  .+++ ||++++.+.+|.
T Consensus        78 ~~~~~Dl~d~~~~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~--~~~~~~v~~SS~~vy~~  155 (346)
T 4egb_A           78 YFVKGEIQNGELLEHVIKERDVQVIVNFAAESHVDRSIENPIPFYDTNVIGTVTLLELVKK--YPHIKLVQVSTDEVYGS  155 (346)
T ss_dssp             EEEECCTTCHHHHHHHHHHHTCCEEEECCCCC---------CHHHHHHTHHHHHHHHHHHH--STTSEEEEEEEGGGGCC
T ss_pred             EEEEcCCCCHHHHHHHHhhcCCCEEEECCcccchhhhhhCHHHHHHHHHHHHHHHHHHHHh--cCCCEEEEeCchHHhCC
Confidence            4455555431  2334444  788886653211                 12456678888  6666 888888777663

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1

Probab=95.92  E-value=0.0037  Score=56.66  Aligned_cols=36  Identities=11%  Similarity=0.117  Sum_probs=32.0

Q ss_pred             HHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565           28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (324)
Q Consensus        28 ~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d   64 (324)
                      .|..++|.|||+|.+|..+|+.|...|.. +..+|..
T Consensus       121 ~l~g~~vgIIG~G~IG~~~A~~l~~~G~~-V~~~dr~  156 (303)
T 1qp8_A          121 LIQGEKVAVLGLGEIGTRVGKILAALGAQ-VRGFSRT  156 (303)
T ss_dssp             CCTTCEEEEESCSTHHHHHHHHHHHTTCE-EEEECSS
T ss_pred             CCCCCEEEEEccCHHHHHHHHHHHHCCCE-EEEECCC
Confidence            58889999999999999999999999974 7788763

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}

Probab=95.91  E-value=0.046  Score=48.82  Aligned_cols=97  Identities=11%  Similarity=0.078  Sum_probs=61.2

Q ss_pred             cCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEe
Q 020565           31 KSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVE  109 (324)
Q Consensus        31 ~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~  109 (324)
                      ..+|+|.|+ |.+|+.+++.|...|. +++.++... ....+                          .      .++..
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~-~~~~~--------------------------~------~~~~~   47 (311)
T 3m2p_A            2 SLKIAVTGGTGFLGQYVVESIKNDGN-TPIILTRSI-GNKAI--------------------------N------DYEYR   47 (311)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCC-C-------------------------------------CCEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCC-EEEEEeCCC-CcccC--------------------------C------ceEEE
Confidence            468999995 8899999999999997 477776631 00000                          0      22333


Q ss_pred             eCCCC-CCchhhcCCccEEEEcCCC-------------HHHHHHHHHHHHhccCCcc-EEEeeecCceE
Q 020565          110 KGDLS-SLDGEFYDKFDVVVVSCCS-------------VTTKKLINEKCRKLSKRVA-FYTVDCRDSCG  163 (324)
Q Consensus       110 ~~~~~-~~~~~~~~~~diVi~~~~~-------------~~~~~~l~~~~~~~~~~ip-~i~~~~~G~~g  163 (324)
                      ..++. +...+.++++|+||.+...             ......+-+.|++  .+++ ||+.++.+.+|
T Consensus        48 ~~Dl~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~n~~~~~~ll~a~~~--~~~~r~v~~SS~~vyg  114 (311)
T 3m2p_A           48 VSDYTLEDLINQLNDVDAVVHLAATRGSQGKISEFHDNEILTQNLYDACYE--NNISNIVYASTISAYS  114 (311)
T ss_dssp             ECCCCHHHHHHHTTTCSEEEECCCCCCSSSCGGGTHHHHHHHHHHHHHHHH--TTCCEEEEEEEGGGCC
T ss_pred             EccccHHHHHHhhcCCCEEEEccccCCCCChHHHHHHHHHHHHHHHHHHHH--cCCCEEEEEccHHHhC
Confidence            33333 1223456678888876532             2223567778888  7776 88888877766

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=95.91  E-value=0.024  Score=51.95  Aligned_cols=94  Identities=14%  Similarity=0.069  Sum_probs=58.8

Q ss_pred             HHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeE
Q 020565           27 RRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRV  106 (324)
Q Consensus        27 ~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v  106 (324)
                      ..|+..+|.|||+|.+|..++.+|...|+ +++++|.+.                      .++.   +...+..  +.+
T Consensus        12 ~~l~~~~I~IIG~G~mG~alA~~L~~~G~-~V~~~~~~~----------------------~~~~---~~a~~~G--~~~   63 (338)
T 1np3_A           12 SIIQGKKVAIIGYGSQGHAHACNLKDSGV-DVTVGLRSG----------------------SATV---AKAEAHG--LKV   63 (338)
T ss_dssp             HHHHTSCEEEECCSHHHHHHHHHHHHTTC-CEEEECCTT----------------------CHHH---HHHHHTT--CEE
T ss_pred             chhcCCEEEEECchHHHHHHHHHHHHCcC-EEEEEECCh----------------------HHHH---HHHHHCC--CEE
Confidence            45778899999999999999999999997 477776521                      1110   1112221  221


Q ss_pred             eEeeCCCCCCchhhcCCccEEEEcCCCHHHHHHHH-HHHHhccCCccEEEe
Q 020565          107 SVEKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLIN-EKCRKLSKRVAFYTV  156 (324)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~diVi~~~~~~~~~~~l~-~~~~~~~~~ip~i~~  156 (324)
                        .      ...+.++++|+||.|+-.......+. ++...+..+..++++
T Consensus        64 --~------~~~e~~~~aDvVilavp~~~~~~v~~~~i~~~l~~~~ivi~~  106 (338)
T 1np3_A           64 --A------DVKTAVAAADVVMILTPDEFQGRLYKEEIEPNLKKGATLAFA  106 (338)
T ss_dssp             --E------CHHHHHHTCSEEEECSCHHHHHHHHHHHTGGGCCTTCEEEES
T ss_pred             --c------cHHHHHhcCCEEEEeCCcHHHHHHHHHHHHhhCCCCCEEEEc
Confidence              1      12345678999999987766655555 444333345555544

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=95.90  E-value=0.05  Score=49.23  Aligned_cols=73  Identities=18%  Similarity=0.087  Sum_probs=49.2

Q ss_pred             CcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHh----hCCCCeEe
Q 020565           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKD----FNPMVRVS  107 (324)
Q Consensus        32 ~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~----lnp~v~v~  107 (324)
                      .+|.|||+|.+|..++..|+..|.-.++++|-+.                      .|++..+..|.+    .....++.
T Consensus         3 ~kI~VIGaG~vG~~~a~~la~~g~~~v~L~Di~~----------------------~~~~g~~~dl~~~~~~~~~~~~i~   60 (309)
T 1ur5_A            3 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVE----------------------GVPQGKALDLYEASPIEGFDVRVT   60 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSS----------------------SHHHHHHHHHHTTHHHHTCCCCEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCc----------------------cHHHHHHHhHHHhHhhcCCCeEEE
Confidence            5899999999999999999999973499988631                      123322233333    23344554


Q ss_pred             EeeCCCCCCchhhcCCccEEEEcCC
Q 020565          108 VEKGDLSSLDGEFYDKFDVVVVSCC  132 (324)
Q Consensus       108 ~~~~~~~~~~~~~~~~~diVi~~~~  132 (324)
                      ...    +  .+.++++|+||.+..
T Consensus        61 ~t~----d--~~a~~~aD~Vi~a~g   79 (309)
T 1ur5_A           61 GTN----N--YADTANSDVIVVTSG   79 (309)
T ss_dssp             EES----C--GGGGTTCSEEEECCC
T ss_pred             ECC----C--HHHHCCCCEEEEcCC
Confidence            431    1  144789999999974

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=95.88  E-value=0.045  Score=49.88  Aligned_cols=72  Identities=19%  Similarity=0.161  Sum_probs=48.8

Q ss_pred             CcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHh----hCCCCeEe
Q 020565           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKD----FNPMVRVS  107 (324)
Q Consensus        32 ~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~----lnp~v~v~  107 (324)
                      .+|.|||+|.+|+.++..|+..|...++++|-+                      ..|++.....+.+    .....++.
T Consensus         5 ~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~----------------------~~~l~~~~~~l~~~~~~~~~~~~i~   62 (322)
T 1t2d_A            5 AKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIV----------------------KNMPHGKALDTSHTNVMAYSNCKVS   62 (322)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSS----------------------SSHHHHHHHHHHTHHHHHTCCCCEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCC----------------------HHHHHHHHHHHHhhhhhcCCCcEEE
Confidence            589999999999999999999998449999863                      1233333333333    23334444


Q ss_pred             EeeCCCCCCchhhcCCccEEEEcC
Q 020565          108 VEKGDLSSLDGEFYDKFDVVVVSC  131 (324)
Q Consensus       108 ~~~~~~~~~~~~~~~~~diVi~~~  131 (324)
                      ...    +  .+.++++|+||.+.
T Consensus        63 ~t~----d--~~al~~aD~Vi~a~   80 (322)
T 1t2d_A           63 GSN----T--YDDLAGADVVIVTA   80 (322)
T ss_dssp             EEC----C--GGGGTTCSEEEECC
T ss_pred             ECC----C--HHHhCCCCEEEEeC
Confidence            321    1  14578999999986

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=95.86  E-value=0.041  Score=50.06  Aligned_cols=74  Identities=14%  Similarity=0.196  Sum_probs=52.6

Q ss_pred             cCcEEEEcCchhHHHHHHHHHHhCC-CcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhC---CCCeE
Q 020565           31 KSHILVCGMKGTVAEFCKNIVLAGV-GSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFN---PMVRV  106 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~~~Gv-~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~ln---p~v~v  106 (324)
                      ..||.|+|+|++|..++..|+..|. .++.|+|-                      .+.|++..+..|....   +.+++
T Consensus         5 ~~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di----------------------~~~~~~g~~~dl~~~~~~~~~~~v   62 (318)
T 1ez4_A            5 HQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDV----------------------VKDRTKGDALDLEDAQAFTAPKKI   62 (318)
T ss_dssp             BCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECS----------------------SHHHHHHHHHHHHGGGGGSCCCEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeC----------------------CchHHHHHHHHHHHHHHhcCCeEE
Confidence            3689999999999999999999985 46888875                      3345665555565543   33344


Q ss_pred             eEeeCCCCCCchhhcCCccEEEEcCCC
Q 020565          107 SVEKGDLSSLDGEFYDKFDVVVVSCCS  133 (324)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~diVi~~~~~  133 (324)
                      ..  .     ..+.++++|+||.+...
T Consensus        63 ~~--~-----~~~a~~~aDvVii~ag~   82 (318)
T 1ez4_A           63 YS--G-----EYSDCKDADLVVITAGA   82 (318)
T ss_dssp             EE--C-----CGGGGTTCSEEEECCCC
T ss_pred             EE--C-----CHHHhCCCCEEEECCCC
Confidence            42  1     24458899999998753

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=95.85  E-value=0.035  Score=53.39  Aligned_cols=33  Identities=15%  Similarity=0.244  Sum_probs=29.4

Q ss_pred             cCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d   64 (324)
                      ..+|.|||+|.+|+.++.+|+..|. +++++|.+
T Consensus         5 ~~~IgvIG~G~mG~~lA~~L~~~G~-~V~v~dr~   37 (474)
T 2iz1_A            5 QANFGVVGMAVMGKNLALNVESRGY-TVAIYNRT   37 (474)
T ss_dssp             TBSEEEECCSHHHHHHHHHHHHTTC-CEEEECSS
T ss_pred             CCcEEEEeeHHHHHHHHHHHHhCCC-EEEEEcCC
Confidence            4689999999999999999999998 48888764

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A

Probab=95.84  E-value=0.0071  Score=56.25  Aligned_cols=50  Identities=18%  Similarity=0.120  Sum_probs=38.1

Q ss_pred             hHHHHHh--hhHHHH----HHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565           14 YDRQIRV--WGADAQ----RRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        14 y~Rqi~l--~g~~~q----~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      |+++++-  |.....    ..|..++|.|||+|.+|..+++.|...|..++..+|.
T Consensus       141 ~~~~~~~g~W~~~~~~~~~~~l~g~tvgIIG~G~IG~~vA~~l~~~G~~~V~~~d~  196 (364)
T 2j6i_A          141 AHEQIINHDWEVAAIAKDAYDIEGKTIATIGAGRIGYRVLERLVPFNPKELLYYDY  196 (364)
T ss_dssp             HHHHHHTTCCCHHHHHTTCCCSTTCEEEEECCSHHHHHHHHHHGGGCCSEEEEECS
T ss_pred             HHHHHHhCCCCcCcccCCcccCCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEECC
Confidence            4555543  653221    2588999999999999999999999999755888775

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=95.83  E-value=0.02  Score=52.16  Aligned_cols=106  Identities=11%  Similarity=0.091  Sum_probs=64.5

Q ss_pred             HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEe
Q 020565           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS  107 (324)
Q Consensus        29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~  107 (324)
                      +...+|+|.|+ |.+|+.+++.|...|. ++++++.+.               +-   ...|.+.+ +.+..  +  .++
T Consensus         8 M~~~~IlVtGatG~iG~~l~~~L~~~g~-~V~~l~R~~---------------~~---~~~~~~~~-~~l~~--~--~v~   63 (346)
T 3i6i_A            8 SPKGRVLIAGATGFIGQFVATASLDAHR-PTYILARPG---------------PR---SPSKAKIF-KALED--K--GAI   63 (346)
T ss_dssp             ---CCEEEECTTSHHHHHHHHHHHHTTC-CEEEEECSS---------------CC---CHHHHHHH-HHHHH--T--TCE
T ss_pred             CCCCeEEEECCCcHHHHHHHHHHHHCCC-CEEEEECCC---------------CC---ChhHHHHH-HHHHh--C--CcE
Confidence            44678999998 8899999999999994 577765521               00   11133221 12222  2  344


Q ss_pred             EeeCCCCC--CchhhcC--CccEEEEcCC--CHHHHHHHHHHHHhccCC-ccEEEeeecC
Q 020565          108 VEKGDLSS--LDGEFYD--KFDVVVVSCC--SVTTKKLINEKCRKLSKR-VAFYTVDCRD  160 (324)
Q Consensus       108 ~~~~~~~~--~~~~~~~--~~diVi~~~~--~~~~~~~l~~~~~~~~~~-ip~i~~~~~G  160 (324)
                      ....++.+  .....++  ++|+||.+..  +......+-+.|++  .+ ++.+....+|
T Consensus        64 ~~~~Dl~d~~~l~~~~~~~~~d~Vi~~a~~~n~~~~~~l~~aa~~--~g~v~~~v~S~~g  121 (346)
T 3i6i_A           64 IVYGLINEQEAMEKILKEHEIDIVVSTVGGESILDQIALVKAMKA--VGTIKRFLPSEFG  121 (346)
T ss_dssp             EEECCTTCHHHHHHHHHHTTCCEEEECCCGGGGGGHHHHHHHHHH--HCCCSEEECSCCS
T ss_pred             EEEeecCCHHHHHHHHhhCCCCEEEECCchhhHHHHHHHHHHHHH--cCCceEEeecccC
Confidence            45556654  2345667  8999998876  45556677788888  56 6555434333

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=95.82  E-value=0.046  Score=45.89  Aligned_cols=94  Identities=12%  Similarity=0.016  Sum_probs=58.9

Q ss_pred             cEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEeeC
Q 020565           33 HILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKG  111 (324)
Q Consensus        33 ~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~~  111 (324)
                      +|+|.|+ |++|+.+++.|+..|. ++++++.+                      ..+.       .++.+.+  +....
T Consensus         2 kvlVtGatG~iG~~l~~~L~~~g~-~V~~~~R~----------------------~~~~-------~~~~~~~--~~~~~   49 (221)
T 3ew7_A            2 KIGIIGATGRAGSRILEEAKNRGH-EVTAIVRN----------------------AGKI-------TQTHKDI--NILQK   49 (221)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC-EEEEEESC----------------------SHHH-------HHHCSSS--EEEEC
T ss_pred             eEEEEcCCchhHHHHHHHHHhCCC-EEEEEEcC----------------------chhh-------hhccCCC--eEEec
Confidence            6999995 8899999999999995 57776552                      1111       1122333  34444


Q ss_pred             CCCCCchhhcCCccEEEEcCCCH--------HHHHHHHHHHHhccCC-ccEEEeeecC
Q 020565          112 DLSSLDGEFYDKFDVVVVSCCSV--------TTKKLINEKCRKLSKR-VAFYTVDCRD  160 (324)
Q Consensus       112 ~~~~~~~~~~~~~diVi~~~~~~--------~~~~~l~~~~~~~~~~-ip~i~~~~~G  160 (324)
                      ++.+...+.+.++|+||.+....        .....+-+.|++  .+ ..+|..++.+
T Consensus        50 D~~d~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~l~~a~~~--~~~~~~v~~SS~~  105 (221)
T 3ew7_A           50 DIFDLTLSDLSDQNVVVDAYGISPDEAEKHVTSLDHLISVLNG--TVSPRLLVVGGAA  105 (221)
T ss_dssp             CGGGCCHHHHTTCSEEEECCCSSTTTTTSHHHHHHHHHHHHCS--CCSSEEEEECCCC
T ss_pred             cccChhhhhhcCCCEEEECCcCCccccchHHHHHHHHHHHHHh--cCCceEEEEecce
Confidence            55443236678999999886432        233556677777  53 3466665543

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=95.81  E-value=0.032  Score=50.08  Aligned_cols=32  Identities=16%  Similarity=0.384  Sum_probs=28.8

Q ss_pred             CcEEEEc-CchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565           32 SHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDDR   64 (324)
Q Consensus        32 ~~VliiG-~g~lGsei~k~L~~~Gv~~i~lvD~d   64 (324)
                      .+|.||| +|.+|+.+++.|...|. +++++|.+
T Consensus        22 ~~I~iIGg~G~mG~~la~~l~~~G~-~V~~~~~~   54 (298)
T 2pv7_A           22 HKIVIVGGYGKLGGLFARYLRASGY-PISILDRE   54 (298)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHTTTC-CEEEECTT
T ss_pred             CEEEEEcCCCHHHHHHHHHHHhCCC-eEEEEECC
Confidence            5899999 99999999999999997 58888864

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=95.80  E-value=0.034  Score=47.15  Aligned_cols=98  Identities=18%  Similarity=0.130  Sum_probs=62.4

Q ss_pred             CcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEee
Q 020565           32 SHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEK  110 (324)
Q Consensus        32 ~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~  110 (324)
                      .+|+|.|+ |.+|..+++.|...|. ++++++...-....+.                             +  .++...
T Consensus         5 ~~ilItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~-----------------------------~--~~~~~~   52 (227)
T 3dhn_A            5 KKIVLIGASGFVGSALLNEALNRGF-EVTAVVRHPEKIKIEN-----------------------------E--HLKVKK   52 (227)
T ss_dssp             CEEEEETCCHHHHHHHHHHHHTTTC-EEEEECSCGGGCCCCC-----------------------------T--TEEEEC
T ss_pred             CEEEEEcCCchHHHHHHHHHHHCCC-EEEEEEcCcccchhcc-----------------------------C--ceEEEE
Confidence            58999995 8899999999999995 5888877432222111                             1  233344


Q ss_pred             CCCCC--CchhhcCCccEEEEcCCC-----------HHHHHHHHHHHHhccCCc-cEEEeeecCceE
Q 020565          111 GDLSS--LDGEFYDKFDVVVVSCCS-----------VTTKKLINEKCRKLSKRV-AFYTVDCRDSCG  163 (324)
Q Consensus       111 ~~~~~--~~~~~~~~~diVi~~~~~-----------~~~~~~l~~~~~~~~~~i-p~i~~~~~G~~g  163 (324)
                      .++.+  .....++++|+||.+...           ......+-+.|++  .++ .+|..++.+.++
T Consensus        53 ~Dl~d~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~n~~~~~~l~~~~~~--~~~~~~v~~Ss~~~~~  117 (227)
T 3dhn_A           53 ADVSSLDEVCEVCKGADAVISAFNPGWNNPDIYDETIKVYLTIIDGVKK--AGVNRFLMVGGAGSLF  117 (227)
T ss_dssp             CCTTCHHHHHHHHTTCSEEEECCCC------CCSHHHHHHHHHHHHHHH--TTCSEEEEECCSTTSE
T ss_pred             ecCCCHHHHHHHhcCCCEEEEeCcCCCCChhHHHHHHHHHHHHHHHHHH--hCCCEEEEeCChhhcc
Confidence            44433  124456677888877543           2334566778887  665 577777766443

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=95.80  E-value=0.019  Score=50.85  Aligned_cols=95  Identities=12%  Similarity=0.107  Sum_probs=56.7

Q ss_pred             cEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEeeCC
Q 020565           33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGD  112 (324)
Q Consensus        33 ~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~~~  112 (324)
                      +|.|||+|.+|+.++..|+..|. +++++|.+.-....+...     ..-   |.               ......... 
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~r~~~~~~~l~~~-----~~~---~~---------------~~~~~~~~~-   56 (291)
T 1ks9_A            2 KITVLGCGALGQLWLTALCKQGH-EVQGWLRVPQPYCSVNLV-----ETD---GS---------------IFNESLTAN-   56 (291)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCSEEEEEEE-----CTT---SC---------------EEEEEEEES-
T ss_pred             eEEEECcCHHHHHHHHHHHhCCC-CEEEEEcCccceeeEEEE-----cCC---Cc---------------eeeeeeeec-
Confidence            69999999999999999999997 699998754222221110     000   11               001111111 


Q ss_pred             CCCCchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEe
Q 020565          113 LSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTV  156 (324)
Q Consensus       113 ~~~~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~  156 (324)
                          ..+.++++|+||.|.-+......+..+...+..+..++..
T Consensus        57 ----~~~~~~~~d~vi~~v~~~~~~~v~~~l~~~l~~~~~vv~~   96 (291)
T 1ks9_A           57 ----DPDFLATSDLLLVTLKAWQVSDAVKSLASTLPVTTPILLI   96 (291)
T ss_dssp             ----CHHHHHTCSEEEECSCGGGHHHHHHHHHTTSCTTSCEEEE
T ss_pred             ----CccccCCCCEEEEEecHHhHHHHHHHHHhhCCCCCEEEEe
Confidence                1234568999999988776665565554332334455554

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=95.78  E-value=0.029  Score=47.39  Aligned_cols=95  Identities=13%  Similarity=0.009  Sum_probs=59.4

Q ss_pred             cEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEeeC
Q 020565           33 HILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKG  111 (324)
Q Consensus        33 ~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~~  111 (324)
                      +|+|.|+ |++|+.+++.|+..|. ++++++.+.                      .+.+    .+  ..+  .++....
T Consensus         2 kilVtGatG~iG~~l~~~L~~~g~-~V~~~~R~~----------------------~~~~----~~--~~~--~~~~~~~   50 (224)
T 3h2s_A            2 KIAVLGATGRAGSAIVAEARRRGH-EVLAVVRDP----------------------QKAA----DR--LGA--TVATLVK   50 (224)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCH----------------------HHHH----HH--TCT--TSEEEEC
T ss_pred             EEEEEcCCCHHHHHHHHHHHHCCC-EEEEEEecc----------------------cccc----cc--cCC--CceEEec
Confidence            6999997 8899999999999996 477765421                      1111    11  112  2334444


Q ss_pred             CCCCCchhhcCCccEEEEcCCC----------HHHHHHHHHHHHhccCCccEEEeeecC
Q 020565          112 DLSSLDGEFYDKFDVVVVSCCS----------VTTKKLINEKCRKLSKRVAFYTVDCRD  160 (324)
Q Consensus       112 ~~~~~~~~~~~~~diVi~~~~~----------~~~~~~l~~~~~~~~~~ip~i~~~~~G  160 (324)
                      ++.+...+.+.++|+||.+...          ......+-+.|++  .+..+|..++.+
T Consensus        51 D~~d~~~~~~~~~d~vi~~ag~~~~~~~~~~n~~~~~~l~~a~~~--~~~~~v~~SS~~  107 (224)
T 3h2s_A           51 EPLVLTEADLDSVDAVVDALSVPWGSGRGYLHLDFATHLVSLLRN--SDTLAVFILGSA  107 (224)
T ss_dssp             CGGGCCHHHHTTCSEEEECCCCCTTSSCTHHHHHHHHHHHHTCTT--CCCEEEEECCGG
T ss_pred             ccccccHhhcccCCEEEECCccCCCcchhhHHHHHHHHHHHHHHH--cCCcEEEEecce
Confidence            5544323667899999988743          2233455566766  556677776654

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=95.76  E-value=0.0097  Score=54.55  Aligned_cols=33  Identities=12%  Similarity=0.048  Sum_probs=29.7

Q ss_pred             CcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (324)
Q Consensus        32 ~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d   64 (324)
                      .+|.|||+|.+|+.++..|+..|...++++|.+
T Consensus        10 ~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~   42 (331)
T 1pzg_A           10 KKVAMIGSGMIGGTMGYLCALRELADVVLYDVV   42 (331)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCEEEEECSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECC
Confidence            589999999999999999999998449999873

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=95.74  E-value=0.025  Score=50.28  Aligned_cols=33  Identities=12%  Similarity=0.077  Sum_probs=27.7

Q ss_pred             cCcEEEEcCchhHHHHHHHHHHhCCC-cEEEEcC
Q 020565           31 KSHILVCGMKGTVAEFCKNIVLAGVG-SLTLMDD   63 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~~~Gv~-~i~lvD~   63 (324)
                      ..+|.|||+|.+|+.+++.|...|.+ +++++|.
T Consensus         6 ~~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~   39 (290)
T 3b1f_A            6 EKTIYIAGLGLIGASLALGIKRDHPHYKIVGYNR   39 (290)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECS
T ss_pred             cceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcC
Confidence            46899999999999999999999743 5777765

>1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A*

Probab=95.74  E-value=0.031  Score=51.60  Aligned_cols=77  Identities=10%  Similarity=0.102  Sum_probs=56.0

Q ss_pred             hcCcEEEEcCchhHHHHHHHHHH-hCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeE
Q 020565           30 SKSHILVCGMKGTVAEFCKNIVL-AGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV  108 (324)
Q Consensus        30 ~~~~VliiG~g~lGsei~k~L~~-~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~  108 (324)
                      ...+|+|||+|+.|...+.+|.. .++.+++++|.                      ...|++.+++.+.+. +.+.+..
T Consensus       128 ~~~~v~iIGaG~~a~~~a~al~~~~~~~~V~V~~r----------------------~~~~a~~la~~~~~~-~g~~~~~  184 (350)
T 1x7d_A          128 NARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDT----------------------DPLATAKLIANLKEY-SGLTIRR  184 (350)
T ss_dssp             TCCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECS----------------------SHHHHHHHHHHHTTC-TTCEEEE
T ss_pred             cCCeEEEECCcHHHHHHHHHHHHhCCCcEEEEEcC----------------------CHHHHHHHHHHHHhc-cCceEEE
Confidence            46789999999999999999864 47888999876                      455777777776542 3343433


Q ss_pred             eeCCCCCCchhhcCCccEEEEcCCCH
Q 020565          109 EKGDLSSLDGEFYDKFDVVVVSCCSV  134 (324)
Q Consensus       109 ~~~~~~~~~~~~~~~~diVi~~~~~~  134 (324)
                      .     ....+.++++|+||.|+-+.
T Consensus       185 ~-----~~~~eav~~aDiVi~aTps~  205 (350)
T 1x7d_A          185 A-----SSVAEAVKGVDIITTVTADK  205 (350)
T ss_dssp             C-----SSHHHHHTTCSEEEECCCCS
T ss_pred             e-----CCHHHHHhcCCEEEEeccCC
Confidence            2     23356678899999998763

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=95.74  E-value=0.03  Score=53.49  Aligned_cols=34  Identities=15%  Similarity=0.057  Sum_probs=30.2

Q ss_pred             CcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCcc
Q 020565           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVV   66 (324)
Q Consensus        32 ~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v   66 (324)
                      .+|.|||+|.+|..+|.+|+..|. +++++|.+.-
T Consensus         3 mkI~VIG~G~vG~~lA~~La~~G~-~V~~~D~~~~   36 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAELGA-NVRCIDTDRN   36 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHH
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCC-EEEEEECCHH
Confidence            589999999999999999999997 5889988643

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=95.73  E-value=0.016  Score=50.79  Aligned_cols=35  Identities=11%  Similarity=0.111  Sum_probs=30.5

Q ss_pred             cCcEEEEcCchhHHHHHHHHHHhCC---CcEEEEcCCc
Q 020565           31 KSHILVCGMKGTVAEFCKNIVLAGV---GSLTLMDDRV   65 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~~~Gv---~~i~lvD~d~   65 (324)
                      ..+|.|||+|.+|+.++++|+..|.   ..++++|.+.
T Consensus         4 ~m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~~~~~   41 (262)
T 2rcy_A            4 NIKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSK   41 (262)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHHTSSCGGGEEEECSSC
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCCCCCeEEEEeCCc
Confidence            3589999999999999999999995   5799998753

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A

Probab=95.72  E-value=0.024  Score=51.75  Aligned_cols=83  Identities=17%  Similarity=0.189  Sum_probs=58.2

Q ss_pred             cCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEee
Q 020565           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEK  110 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~  110 (324)
                      +.+|+|+|+|.+|..+++.|...|.  ++++|.|.                      .+++ +    ++  +.  +.+..
T Consensus       115 ~~~viI~G~G~~g~~l~~~L~~~g~--v~vid~~~----------------------~~~~-~----~~--~~--~~~i~  161 (336)
T 1lnq_A          115 SRHVVICGWSESTLECLRELRGSEV--FVLAEDEN----------------------VRKK-V----LR--SG--ANFVH  161 (336)
T ss_dssp             -CEEEEESCCHHHHHHHTTGGGSCE--EEEESCGG----------------------GHHH-H----HH--TT--CEEEE
T ss_pred             cCCEEEECCcHHHHHHHHHHHhCCc--EEEEeCCh----------------------hhhh-H----Hh--CC--cEEEE
Confidence            5689999999999999999999997  88888732                      2332 2    11  12  23333


Q ss_pred             CCCCCC---chhhcCCccEEEEcCCCHHHHHHHHHHHHh
Q 020565          111 GDLSSL---DGEFYDKFDVVVVSCCSVTTKKLINEKCRK  146 (324)
Q Consensus       111 ~~~~~~---~~~~~~~~diVi~~~~~~~~~~~l~~~~~~  146 (324)
                      .+..+.   ...-++++|.||.++++.+....+-..+++
T Consensus       162 gd~~~~~~L~~a~i~~a~~vi~~~~~d~~n~~~~~~ar~  200 (336)
T 1lnq_A          162 GDPTRVSDLEKANVRGARAVIVDLESDSETIHCILGIRK  200 (336)
T ss_dssp             SCTTSHHHHHHTCSTTEEEEEECCSSHHHHHHHHHHHHT
T ss_pred             eCCCCHHHHHhcChhhccEEEEcCCccHHHHHHHHHHHH
Confidence            343321   123367899999999988888888888888

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=95.70  E-value=0.038  Score=49.88  Aligned_cols=106  Identities=13%  Similarity=0.147  Sum_probs=62.5

Q ss_pred             cCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhh-CCCCeEeE
Q 020565           31 KSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDF-NPMVRVSV  108 (324)
Q Consensus        31 ~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~l-np~v~v~~  108 (324)
                      +.+|+|.|+ |++|..+++.|+..|.. ++++|...-.                  ..    ...+.+.+. .+  .+..
T Consensus         5 ~~~vlVTGatG~iG~~l~~~L~~~G~~-V~~~~r~~~~------------------~~----~~~~~~~~~~~~--~~~~   59 (341)
T 3enk_A            5 KGTILVTGGAGYIGSHTAVELLAHGYD-VVIADNLVNS------------------KR----EAIARIEKITGK--TPAF   59 (341)
T ss_dssp             SCEEEEETTTSHHHHHHHHHHHHTTCE-EEEECCCSSS------------------CT----HHHHHHHHHHSC--CCEE
T ss_pred             CcEEEEecCCcHHHHHHHHHHHHCCCc-EEEEecCCcc------------------hH----HHHHHHHhhcCC--CceE
Confidence            468999995 88999999999999975 7776652111                  11    112222222 22  3344


Q ss_pred             eeCCCCCC--chhhcC--CccEEEEcCCCH-----------------HHHHHHHHHHHhccCCc-cEEEeeecCceE
Q 020565          109 EKGDLSSL--DGEFYD--KFDVVVVSCCSV-----------------TTKKLINEKCRKLSKRV-AFYTVDCRDSCG  163 (324)
Q Consensus       109 ~~~~~~~~--~~~~~~--~~diVi~~~~~~-----------------~~~~~l~~~~~~~~~~i-p~i~~~~~G~~g  163 (324)
                      +..++.+.  ....++  +.|+||.+....                 .....+-+.|++  .++ .+|++++.+.+|
T Consensus        60 ~~~Dl~d~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~--~~~~~iv~~SS~~~~g  134 (341)
T 3enk_A           60 HETDVSDERALARIFDAHPITAAIHFAALKAVGESVAKPIEYYRNNLDSLLSLLRVMRE--RAVKRIVFSSSATVYG  134 (341)
T ss_dssp             ECCCTTCHHHHHHHHHHSCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHH--TTCCEEEEEEEGGGBC
T ss_pred             EEeecCCHHHHHHHHhccCCcEEEECccccccCccccChHHHHHHHHHHHHHHHHHHHh--CCCCEEEEEecceEec
Confidence            44455431  233444  788888776421                 112345567777  554 688888777665

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=95.68  E-value=0.041  Score=49.96  Aligned_cols=73  Identities=14%  Similarity=0.119  Sum_probs=50.6

Q ss_pred             cEEEEcCchhHHHHHHHHHHhCC-CcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhh----CCCCeEe
Q 020565           33 HILVCGMKGTVAEFCKNIVLAGV-GSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDF----NPMVRVS  107 (324)
Q Consensus        33 ~VliiG~g~lGsei~k~L~~~Gv-~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~l----np~v~v~  107 (324)
                      +|.|+|+|.+|+.++..|+..|+ ++++++|-                      ...|++..+..|+..    ...+++.
T Consensus         2 kv~ViGaG~vG~~~a~~l~~~~~~~el~l~D~----------------------~~~k~~g~a~DL~~~~~~~~~~~~v~   59 (314)
T 3nep_X            2 KVTVIGAGNVGATVAECVARQDVAKEVVMVDI----------------------KDGMPQGKALDMRESSPIHGFDTRVT   59 (314)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCSSEEEEECS----------------------STTHHHHHHHHHHHHHHHHTCCCEEE
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeC----------------------chHHHHHHHHHHhccccccCCCcEEE
Confidence            79999999999999999999997 47888887                      222444444445443    2234554


Q ss_pred             EeeCCCCCCchhhcCCccEEEEcCCC
Q 020565          108 VEKGDLSSLDGEFYDKFDVVVVSCCS  133 (324)
Q Consensus       108 ~~~~~~~~~~~~~~~~~diVi~~~~~  133 (324)
                      .. .     ..+.++++|+||.+...
T Consensus        60 ~~-~-----~~~a~~~aDvVii~ag~   79 (314)
T 3nep_X           60 GT-N-----DYGPTEDSDVCIITAGL   79 (314)
T ss_dssp             EE-S-----SSGGGTTCSEEEECCCC
T ss_pred             EC-C-----CHHHhCCCCEEEECCCC
Confidence            32 1     13567899999998753

>2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens}

Probab=95.68  E-value=0.015  Score=52.69  Aligned_cols=72  Identities=17%  Similarity=0.135  Sum_probs=50.0

Q ss_pred             hcCcEEEEcCchhHHHHHHHHHHh-CCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeE
Q 020565           30 SKSHILVCGMKGTVAEFCKNIVLA-GVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV  108 (324)
Q Consensus        30 ~~~~VliiG~g~lGsei~k~L~~~-Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~  108 (324)
                      ...+|.|||+|..|..++++|... |+.+++++|.                      ...|++.+++.+..     ++..
T Consensus       134 ~~~~igiIG~G~~g~~~a~~l~~~~g~~~V~v~dr----------------------~~~~~~~l~~~~~~-----~~~~  186 (312)
T 2i99_A          134 SSEVLCILGAGVQAYSHYEIFTEQFSFKEVRIWNR----------------------TKENAEKFADTVQG-----EVRV  186 (312)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHHCCCSEEEEECS----------------------SHHHHHHHHHHSSS-----CCEE
T ss_pred             CCcEEEEECCcHHHHHHHHHHHHhCCCcEEEEEcC----------------------CHHHHHHHHHHhhC-----CeEE
Confidence            467899999999999999999988 8888999876                      33345444443321     1111


Q ss_pred             eeCCCCCCchhhcCCccEEEEcCCC
Q 020565          109 EKGDLSSLDGEFYDKFDVVVVSCCS  133 (324)
Q Consensus       109 ~~~~~~~~~~~~~~~~diVi~~~~~  133 (324)
                           .....+.++++|+||.|+-.
T Consensus       187 -----~~~~~e~v~~aDiVi~atp~  206 (312)
T 2i99_A          187 -----CSSVQEAVAGADVIITVTLA  206 (312)
T ss_dssp             -----CSSHHHHHTTCSEEEECCCC
T ss_pred             -----eCCHHHHHhcCCEEEEEeCC
Confidence                 12235667789999988754

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}

Probab=95.67  E-value=0.0091  Score=54.59  Aligned_cols=38  Identities=11%  Similarity=0.183  Sum_probs=33.1

Q ss_pred             HHHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565           26 QRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (324)
Q Consensus        26 q~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d   64 (324)
                      ...|..++|.|||+|.+|..+|+.|...|.. +..+|..
T Consensus       132 ~~~l~gktvGIiGlG~IG~~vA~~l~~~G~~-V~~~dr~  169 (324)
T 3evt_A          132 TSTLTGQQLLIYGTGQIGQSLAAKASALGMH-VIGVNTT  169 (324)
T ss_dssp             CCCSTTCEEEEECCSHHHHHHHHHHHHTTCE-EEEEESS
T ss_pred             CccccCCeEEEECcCHHHHHHHHHHHhCCCE-EEEECCC
Confidence            3468899999999999999999999999984 7777763

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=95.66  E-value=0.02  Score=52.12  Aligned_cols=72  Identities=19%  Similarity=0.154  Sum_probs=48.2

Q ss_pred             cEEEEcCchhHHHHHHHHHHhCC-CcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhC---CCCeEeE
Q 020565           33 HILVCGMKGTVAEFCKNIVLAGV-GSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFN---PMVRVSV  108 (324)
Q Consensus        33 ~VliiG~g~lGsei~k~L~~~Gv-~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~ln---p~v~v~~  108 (324)
                      +|.|||+|.+|+.++..|+..|. ++++++|.+                      ..+++.....+....   +..++..
T Consensus         2 kI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~----------------------~~~~~~~~~~l~~~~~~~~~~~i~~   59 (319)
T 1a5z_A            2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVD----------------------KKRAEGDALDLIHGTPFTRRANIYA   59 (319)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS----------------------HHHHHHHHHHHHHHGGGSCCCEEEE
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCC----------------------hHHHHHHHHHHHhhhhhcCCcEEEe
Confidence            69999999999999999999995 468888762                      223343333333322   2334432


Q ss_pred             eeCCCCCCchhhcCCccEEEEcCCC
Q 020565          109 EKGDLSSLDGEFYDKFDVVVVSCCS  133 (324)
Q Consensus       109 ~~~~~~~~~~~~~~~~diVi~~~~~  133 (324)
                        .   +  .+.++++|+||.+...
T Consensus        60 --~---d--~~~~~~aDvViiav~~   77 (319)
T 1a5z_A           60 --G---D--YADLKGSDVVIVAAGV   77 (319)
T ss_dssp             --C---C--GGGGTTCSEEEECCCC
T ss_pred             --C---C--HHHhCCCCEEEEccCC
Confidence              1   1  2346899999999864

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=95.66  E-value=0.026  Score=51.66  Aligned_cols=78  Identities=12%  Similarity=0.126  Sum_probs=54.9

Q ss_pred             HHHhcCcEEEEcCchhHHHHHHHHHHhCC-CcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCC--
Q 020565           27 RRLSKSHILVCGMKGTVAEFCKNIVLAGV-GSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPM--  103 (324)
Q Consensus        27 ~~l~~~~VliiG~g~lGsei~k~L~~~Gv-~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~--  103 (324)
                      ......+|.|+|+|.+|+.++..|+..|. .+++|+|-                      ...|++..+.-|+...+.  
T Consensus        15 ~~~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~L~Di----------------------~~~~~~g~a~DL~~~~~~~~   72 (331)
T 4aj2_A           15 EQVPQNKITVVGVGAVGMACAISILMKDLADELALVDV----------------------IEDKLKGEMMDLQHGSLFLK   72 (331)
T ss_dssp             --CCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECS----------------------CHHHHHHHHHHHHHTGGGCS
T ss_pred             ccCCCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEeC----------------------ChHHHHHHHHhhhhhhhccC
Confidence            45677899999999999999999999997 47899886                      444677767777765432  


Q ss_pred             -CeEeEeeCCCCCCchhhcCCccEEEEcCC
Q 020565          104 -VRVSVEKGDLSSLDGEFYDKFDVVVVSCC  132 (324)
Q Consensus       104 -v~v~~~~~~~~~~~~~~~~~~diVi~~~~  132 (324)
                       ..+.. ..   +  .+.++++|+||.+..
T Consensus        73 ~~~i~~-~~---d--~~~~~~aDiVvi~aG   96 (331)
T 4aj2_A           73 TPKIVS-SK---D--YSVTANSKLVIITAG   96 (331)
T ss_dssp             CCEEEE-CS---S--GGGGTTEEEEEECCS
T ss_pred             CCeEEE-cC---C--HHHhCCCCEEEEccC
Confidence             22221 11   1  234889999998864

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=95.66  E-value=0.039  Score=50.48  Aligned_cols=75  Identities=13%  Similarity=0.092  Sum_probs=51.0

Q ss_pred             hcCcEEEEcCchhHHHHHHHHHHhCC-CcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCC---CCe
Q 020565           30 SKSHILVCGMKGTVAEFCKNIVLAGV-GSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNP---MVR  105 (324)
Q Consensus        30 ~~~~VliiG~g~lGsei~k~L~~~Gv-~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp---~v~  105 (324)
                      ...+|.|+|+|.+|+.++..|+..|+ ++++++|-                      .+.|++..+..|+...+   ..+
T Consensus        20 ~~~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~Di----------------------~~~~~~g~a~DL~~~~~~~~~~~   77 (330)
T 3ldh_A           20 SYNKITVVGCDAVGMADAISVLMKDLADEVALVDV----------------------MEDKLKGEMMDLEHGSLFLHTAK   77 (330)
T ss_dssp             CCCEEEEESTTHHHHHHHHHHHHHCCCSEEEEECS----------------------CHHHHHHHHHHHHHHGGGSCCSE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEEC----------------------CHHHHHHHHHHhhhhhhcccCCe
Confidence            34689999999999999999999998 57999886                      33344444444554322   333


Q ss_pred             EeEeeCCCCCCchhhcCCccEEEEcCC
Q 020565          106 VSVEKGDLSSLDGEFYDKFDVVVVSCC  132 (324)
Q Consensus       106 v~~~~~~~~~~~~~~~~~~diVi~~~~  132 (324)
                      +... .+   . ++ ++++|+||.+..
T Consensus        78 i~~t-~d---~-~~-~~daDiVIitaG   98 (330)
T 3ldh_A           78 IVSG-KD---Y-SV-SAGSKLVVITAG   98 (330)
T ss_dssp             EEEE-SS---S-CS-CSSCSEEEECCS
T ss_pred             EEEc-CC---H-HH-hCCCCEEEEeCC
Confidence            3322 11   2 22 889999998853

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=95.66  E-value=0.0095  Score=55.08  Aligned_cols=49  Identities=16%  Similarity=0.120  Sum_probs=37.8

Q ss_pred             hHHHHHh--hhHHHH----HHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565           14 YDRQIRV--WGADAQ----RRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        14 y~Rqi~l--~g~~~q----~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      |+++++-  |.....    ..|..++|.|||+|.+|..+|+.|...|.. +..+|.
T Consensus       141 ~~~~~~~g~W~~~~~~~~~~~l~gktvGIIG~G~IG~~vA~~l~~~G~~-V~~~dr  195 (351)
T 3jtm_A          141 GYNQVVKGEWNVAGIAYRAYDLEGKTIGTVGAGRIGKLLLQRLKPFGCN-LLYHDR  195 (351)
T ss_dssp             HHHHHHTTCCCHHHHHTTCCCSTTCEEEEECCSHHHHHHHHHHGGGCCE-EEEECS
T ss_pred             HHHHHHcCCCccccccCCcccccCCEEeEEEeCHHHHHHHHHHHHCCCE-EEEeCC
Confidence            4455443  654432    248899999999999999999999999986 777775

>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*

Probab=95.64  E-value=0.059  Score=49.03  Aligned_cols=112  Identities=11%  Similarity=0.068  Sum_probs=68.0

Q ss_pred             HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhh-CCCCeE
Q 020565           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDF-NPMVRV  106 (324)
Q Consensus        29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~l-np~v~v  106 (324)
                      ++..+|+|.|+ |.+|+.+++.|+..|. +++++|...-.                  ...+.+.+.+.+... .+  .+
T Consensus        25 ~~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~------------------~~~~~~~~~~~~~~~~~~--~~   83 (352)
T 1sb8_A           25 AQPKVWLITGVAGFIGSNLLETLLKLDQ-KVVGLDNFATG------------------HQRNLDEVRSLVSEKQWS--NF   83 (352)
T ss_dssp             HSCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSSC------------------CHHHHHHHHHHSCHHHHT--TE
T ss_pred             ccCCeEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCCcc------------------chhhHHHHhhhcccccCC--ce
Confidence            66788999998 8899999999999996 47777652100                  111222222222111 12  34


Q ss_pred             eEeeCCCCCC--chhhcCCccEEEEcCCCH---------H--------HHHHHHHHHHhccCCc-cEEEeeecCceE
Q 020565          107 SVEKGDLSSL--DGEFYDKFDVVVVSCCSV---------T--------TKKLINEKCRKLSKRV-AFYTVDCRDSCG  163 (324)
Q Consensus       107 ~~~~~~~~~~--~~~~~~~~diVi~~~~~~---------~--------~~~~l~~~~~~~~~~i-p~i~~~~~G~~g  163 (324)
                      +....++.+.  ..+.++++|+||.+....         .        ....+-+.|++  .++ .+|++++.+.+|
T Consensus        84 ~~~~~Dl~d~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~--~~~~~~v~~SS~~~~~  158 (352)
T 1sb8_A           84 KFIQGDIRNLDDCNNACAGVDYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARD--AKVQSFTYAASSSTYG  158 (352)
T ss_dssp             EEEECCTTSHHHHHHHHTTCSEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHH--TTCSEEEEEEEGGGGT
T ss_pred             EEEECCCCCHHHHHHHhcCCCEEEECCcccCchhhhhCHHHHHHHHHHHHHHHHHHHHH--cCCCEEEEeccHHhcC
Confidence            5555566542  345678999999886521         1        11345567777  665 478888776655

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=95.61  E-value=0.064  Score=45.24  Aligned_cols=93  Identities=11%  Similarity=0.075  Sum_probs=59.9

Q ss_pred             cEEEEc-CchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEeeC
Q 020565           33 HILVCG-MKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKG  111 (324)
Q Consensus        33 ~VliiG-~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~~  111 (324)
                      +|+|.| .|++|..+++.|+..|. ++++++.+.-....+                              +  .++....
T Consensus         2 ~ilItGatG~iG~~l~~~L~~~g~-~V~~~~R~~~~~~~~------------------------------~--~~~~~~~   48 (219)
T 3dqp_A            2 KIFIVGSTGRVGKSLLKSLSTTDY-QIYAGARKVEQVPQY------------------------------N--NVKAVHF   48 (219)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTSSC-EEEEEESSGGGSCCC------------------------------T--TEEEEEC
T ss_pred             eEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCccchhhc------------------------------C--CceEEEe
Confidence            699999 58899999999999995 477777642111110                              1  2334444


Q ss_pred             CCCC---CchhhcCCccEEEEcCC---------CHHHHHHHHHHHHhccCCc-cEEEeeecC
Q 020565          112 DLSS---LDGEFYDKFDVVVVSCC---------SVTTKKLINEKCRKLSKRV-AFYTVDCRD  160 (324)
Q Consensus       112 ~~~~---~~~~~~~~~diVi~~~~---------~~~~~~~l~~~~~~~~~~i-p~i~~~~~G  160 (324)
                      ++.+   .....++++|+||.+..         +......+-+.|++  .++ .+|..++.+
T Consensus        49 D~~d~~~~~~~~~~~~d~vi~~ag~~~~~~~~~n~~~~~~l~~a~~~--~~~~~iv~~SS~~  108 (219)
T 3dqp_A           49 DVDWTPEEMAKQLHGMDAIINVSGSGGKSLLKVDLYGAVKLMQAAEK--AEVKRFILLSTIF  108 (219)
T ss_dssp             CTTSCHHHHHTTTTTCSEEEECCCCTTSSCCCCCCHHHHHHHHHHHH--TTCCEEEEECCTT
T ss_pred             cccCCHHHHHHHHcCCCEEEECCcCCCCCcEeEeHHHHHHHHHHHHH--hCCCEEEEECccc
Confidence            4443   22455678899998765         23335567778887  665 466666644

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=95.59  E-value=0.017  Score=51.47  Aligned_cols=32  Identities=19%  Similarity=0.209  Sum_probs=28.7

Q ss_pred             cEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCc
Q 020565           33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV   65 (324)
Q Consensus        33 ~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~   65 (324)
                      +|.|||+|.+|+.++++|+..|. +++++|.+.
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~-~V~~~~~~~   33 (296)
T 2gf2_A            2 PVGFIGLGNMGNPMAKNLMKHGY-PLIIYDVFP   33 (296)
T ss_dssp             CEEEECCSTTHHHHHHHHHHTTC-CEEEECSST
T ss_pred             eEEEEeccHHHHHHHHHHHHCCC-EEEEEeCCH
Confidence            69999999999999999999997 588888753

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=95.55  E-value=0.0099  Score=54.95  Aligned_cols=30  Identities=7%  Similarity=-0.022  Sum_probs=27.2

Q ss_pred             cEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565           33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        33 ~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      +|.|||+|.+|+.++.+|+.+|. +++++|.
T Consensus        17 kI~iIG~G~mG~~la~~L~~~G~-~V~~~~r   46 (366)
T 1evy_A           17 KAVVFGSGAFGTALAMVLSKKCR-EVCVWHM   46 (366)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTEE-EEEEECS
T ss_pred             eEEEECCCHHHHHHHHHHHhCCC-EEEEEEC
Confidence            89999999999999999999986 5888776

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=95.51  E-value=0.044  Score=53.06  Aligned_cols=123  Identities=13%  Similarity=0.084  Sum_probs=67.5

Q ss_pred             HhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhh-CCCCeEe
Q 020565           29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDF-NPMVRVS  107 (324)
Q Consensus        29 l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~l-np~v~v~  107 (324)
                      -.+.+|.|||+|.+|+.++.+|+..|. +++++|.+.-....+.....  . .-   |-.-+....+.+..+ .+++-+.
T Consensus         8 ~~~~~IgvIGlG~MG~~lA~~La~~G~-~V~v~dr~~~~~~~l~~~~~--~-~~---gi~~~~s~~e~v~~l~~aDvVil   80 (497)
T 2p4q_A            8 HMSADFGLIGLAVMGQNLILNAADHGF-TVCAYNRTQSKVDHFLANEA--K-GK---SIIGATSIEDFISKLKRPRKVML   80 (497)
T ss_dssp             -CCCSEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSHHHHHHHHTTT--T-TS---SEECCSSHHHHHHTSCSSCEEEE
T ss_pred             cCCCCEEEEeeHHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHcccc--c-CC---CeEEeCCHHHHHhcCCCCCEEEE
Confidence            356799999999999999999999998 48998875433322221000  0 00   110011112223322 2454444


Q ss_pred             EeeCC--CCCC---chhhcCCccEEEEcCC-CHHHHHHHHHHHHhccCCccEEEeeecC
Q 020565          108 VEKGD--LSSL---DGEFYDKFDVVVVSCC-SVTTKKLINEKCRKLSKRVAFYTVDCRD  160 (324)
Q Consensus       108 ~~~~~--~~~~---~~~~~~~~diVi~~~~-~~~~~~~l~~~~~~~~~~ip~i~~~~~G  160 (324)
                      ..+..  +.+.   ....++.-++||++.. .+.....+.+.+.+  .++.|+.+.+.|
T Consensus        81 ~Vp~~~~v~~vl~~l~~~l~~g~iIId~s~~~~~~~~~l~~~l~~--~g~~~v~~pVsg  137 (497)
T 2p4q_A           81 LVKAGAPVDALINQIVPLLEKGDIIIDGGNSHFPDSNRRYEELKK--KGILFVGSGVSG  137 (497)
T ss_dssp             CCCSSHHHHHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHH--TTCEEEEEEEES
T ss_pred             EcCChHHHHHHHHHHHHhCCCCCEEEECCCCChhHHHHHHHHHHH--cCCceeCCCccc
Confidence            43331  1111   1233455578887764 34444556666767  778888766554

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=95.51  E-value=0.048  Score=49.79  Aligned_cols=73  Identities=14%  Similarity=0.163  Sum_probs=51.4

Q ss_pred             cCcEEEEcCchhHHHHHHHHHHhCC-CcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhC---CCCeE
Q 020565           31 KSHILVCGMKGTVAEFCKNIVLAGV-GSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFN---PMVRV  106 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~~~Gv-~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~ln---p~v~v  106 (324)
                      ..||.|+|+|++|..++..|+..|. .++.|+|-                      ...|++..+..|....   +.+++
T Consensus         9 ~~KI~IiGaG~vG~~la~~l~~~~~~~el~L~Di----------------------~~~~~~g~~~dl~~~~~~~~~~~i   66 (326)
T 2zqz_A            9 HQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDI----------------------FKDKTKGDAIDLSNALPFTSPKKI   66 (326)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECS----------------------CHHHHHHHHHHHHTTGGGSCCCEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeC----------------------CchHhHHHHHHHHHHHHhcCCeEE
Confidence            4689999999999999999999885 46888875                      3345555555555443   33444


Q ss_pred             eEeeCCCCCCchhhcCCccEEEEcCC
Q 020565          107 SVEKGDLSSLDGEFYDKFDVVVVSCC  132 (324)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~diVi~~~~  132 (324)
                      ..  .     ..+.++++|+||.+..
T Consensus        67 ~~--~-----~~~a~~~aDvVii~ag   85 (326)
T 2zqz_A           67 YS--A-----EYSDAKDADLVVITAG   85 (326)
T ss_dssp             EE--C-----CGGGGGGCSEEEECCC
T ss_pred             EE--C-----CHHHhCCCCEEEEcCC
Confidence            42  1     2445889999999875

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=95.50  E-value=0.02  Score=54.80  Aligned_cols=35  Identities=11%  Similarity=0.134  Sum_probs=30.5

Q ss_pred             hcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCc
Q 020565           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV   65 (324)
Q Consensus        30 ~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~   65 (324)
                      +.++|+|+|+|++|..++..|+..|. +++++|.+.
T Consensus         2 ~~k~VlViGaG~iG~~ia~~L~~~G~-~V~v~~R~~   36 (450)
T 1ff9_A            2 ATKSVLMLGSGFVTRPTLDVLTDSGI-KVTVACRTL   36 (450)
T ss_dssp             CCCEEEEECCSTTHHHHHHHHHTTTC-EEEEEESSH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCcC-EEEEEECCH
Confidence            45789999999999999999999996 499988754

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=95.48  E-value=0.024  Score=51.64  Aligned_cols=34  Identities=21%  Similarity=0.182  Sum_probs=30.1

Q ss_pred             cCcEEEEcCchhHHHHHHHHHHhCC-CcEEEEcCC
Q 020565           31 KSHILVCGMKGTVAEFCKNIVLAGV-GSLTLMDDR   64 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~~~Gv-~~i~lvD~d   64 (324)
                      ..||.|||+|.+|..++..|+..|. ++++++|-+
T Consensus         7 ~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~   41 (318)
T 1y6j_A            7 RSKVAIIGAGFVGASAAFTMALRQTANELVLIDVF   41 (318)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            4689999999999999999999986 579999873

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=95.46  E-value=0.064  Score=45.96  Aligned_cols=103  Identities=10%  Similarity=-0.019  Sum_probs=62.6

Q ss_pred             HhcCcEEEEc-CchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEe
Q 020565           29 LSKSHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS  107 (324)
Q Consensus        29 l~~~~VliiG-~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~  107 (324)
                      +..++|+|.| .|++|..+++.|+..|--++++++.+.-....+          .   +                 -.++
T Consensus        21 ~~mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~~~~----------~---~-----------------~~~~   70 (236)
T 3qvo_A           21 GHMKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKP----------Y---P-----------------TNSQ   70 (236)
T ss_dssp             -CCEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGSCSS----------C---C-----------------TTEE
T ss_pred             CcccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhhccc----------c---c-----------------CCcE
Confidence            3456899999 589999999999999943577776532111100          0   1                 1244


Q ss_pred             EeeCCCCC--CchhhcCCccEEEEcCCCHHH---HHHHHHHHHhccCCc-cEEEeeecCceE
Q 020565          108 VEKGDLSS--LDGEFYDKFDVVVVSCCSVTT---KKLINEKCRKLSKRV-AFYTVDCRDSCG  163 (324)
Q Consensus       108 ~~~~~~~~--~~~~~~~~~diVi~~~~~~~~---~~~l~~~~~~~~~~i-p~i~~~~~G~~g  163 (324)
                      ....++.+  .....++++|+||.+......   ...+-+.|++  .++ .+|+.++.+.++
T Consensus        71 ~~~~Dl~d~~~~~~~~~~~D~vv~~a~~~~~~~~~~~~~~~~~~--~~~~~iV~iSS~~~~~  130 (236)
T 3qvo_A           71 IIMGDVLNHAALKQAMQGQDIVYANLTGEDLDIQANSVIAAMKA--CDVKRLIFVLSLGIYD  130 (236)
T ss_dssp             EEECCTTCHHHHHHHHTTCSEEEEECCSTTHHHHHHHHHHHHHH--TTCCEEEEECCCCC--
T ss_pred             EEEecCCCHHHHHHHhcCCCEEEEcCCCCchhHHHHHHHHHHHH--cCCCEEEEEecceecC
Confidence            45555554  234567889999977654222   2345566766  554 477777766555

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=95.45  E-value=0.058  Score=49.97  Aligned_cols=91  Identities=9%  Similarity=0.079  Sum_probs=54.1

Q ss_pred             CcEEEEcCchhHHHHHHHHHHhCC------CcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHH--hhCCC
Q 020565           32 SHILVCGMKGTVAEFCKNIVLAGV------GSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLK--DFNPM  103 (324)
Q Consensus        32 ~~VliiG~g~lGsei~k~L~~~Gv------~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~--~lnp~  103 (324)
                      .+|.|||+|.+|+.++..|+.+|.      .+++++|.+.-.              .   ++.+++.+.+.-.  ..-|.
T Consensus        22 ~kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~~--------------~---~~~~~~~l~~~~~~~~~~~~   84 (375)
T 1yj8_A           22 LKISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEFV--------------N---GERMVDIINNKHENTKYLKG   84 (375)
T ss_dssp             BCEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEECCSCC--------------------CCHHHHHHHHCBCTTTSTT
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEEECChhh--------------h---hHHHHHHHHhcCcccccCCc
Confidence            479999999999999999999992      358888763210              1   3334544433210  00111


Q ss_pred             Ce----EeEeeCCCCCCchhhcCCccEEEEcCCCHHHHHHHHHHH
Q 020565          104 VR----VSVEKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKC  144 (324)
Q Consensus       104 v~----v~~~~~~~~~~~~~~~~~~diVi~~~~~~~~~~~l~~~~  144 (324)
                      ..    +...     ....+.++++|+||.|.-+......+.++.
T Consensus        85 ~~~~~~i~~~-----~~~~ea~~~aDvVilav~~~~~~~vl~~i~  124 (375)
T 1yj8_A           85 VPLPHNIVAH-----SDLASVINDADLLIFIVPCQYLESVLASIK  124 (375)
T ss_dssp             CBCCTTEEEE-----SSTHHHHTTCSEEEECCCHHHHHHHHHHHT
T ss_pred             ccCcCCeEEE-----CCHHHHHcCCCEEEEcCCHHHHHHHHHHHh
Confidence            11    1111     122355678999999987655555555554

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}

Probab=95.45  E-value=0.023  Score=52.19  Aligned_cols=109  Identities=15%  Similarity=0.093  Sum_probs=64.8

Q ss_pred             HHHHHHhcCcEEEEcC-chhHHHHHHHHHHh-CCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhC
Q 020565           24 DAQRRLSKSHILVCGM-KGTVAEFCKNIVLA-GVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFN  101 (324)
Q Consensus        24 ~~q~~l~~~~VliiG~-g~lGsei~k~L~~~-Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~ln  101 (324)
                      .+...++..+|+|.|. |.+|+.+++.|... |. +++.+|...-....+                             .
T Consensus        17 ~~~~~m~~~~vlVtGatG~iG~~l~~~L~~~~g~-~V~~~~r~~~~~~~~-----------------------------~   66 (372)
T 3slg_A           17 QGPGSMKAKKVLILGVNGFIGHHLSKRILETTDW-EVFGMDMQTDRLGDL-----------------------------V   66 (372)
T ss_dssp             ------CCCEEEEESCSSHHHHHHHHHHHHHSSC-EEEEEESCCTTTGGG-----------------------------G
T ss_pred             cCCcccCCCEEEEECCCChHHHHHHHHHHhCCCC-EEEEEeCChhhhhhh-----------------------------c
Confidence            4456678889999995 88999999999998 75 477777532111100                             0


Q ss_pred             CCCeEeEeeCCCC-C--CchhhcCCccEEEEcCC--CHHH---------------HHHHHHHHHhccCCccEEEeeecCc
Q 020565          102 PMVRVSVEKGDLS-S--LDGEFYDKFDVVVVSCC--SVTT---------------KKLINEKCRKLSKRVAFYTVDCRDS  161 (324)
Q Consensus       102 p~v~v~~~~~~~~-~--~~~~~~~~~diVi~~~~--~~~~---------------~~~l~~~~~~~~~~ip~i~~~~~G~  161 (324)
                      ..-.++....++. +  .....++++|+||.+..  ....               ...+-+.|++  .+..||++++.+.
T Consensus        67 ~~~~v~~~~~Dl~~d~~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~--~~~~~v~~SS~~v  144 (372)
T 3slg_A           67 KHERMHFFEGDITINKEWVEYHVKKCDVILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVK--YGKHLVFPSTSEV  144 (372)
T ss_dssp             GSTTEEEEECCTTTCHHHHHHHHHHCSEEEECBCCCCHHHHHHCHHHHHHHHTTTTHHHHHHHHH--HTCEEEEECCGGG
T ss_pred             cCCCeEEEeCccCCCHHHHHHHhccCCEEEEcCccccHHHHhhCHHHHHHHHHHHHHHHHHHHHH--hCCcEEEeCcHHH
Confidence            0113445555555 3  12345567899987543  1111               1345677777  4577898888877


Q ss_pred             eEE
Q 020565          162 CGE  164 (324)
Q Consensus       162 ~g~  164 (324)
                      +|.
T Consensus       145 yg~  147 (372)
T 3slg_A          145 YGM  147 (372)
T ss_dssp             GBS
T ss_pred             hCC
Confidence            764

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=95.45  E-value=0.025  Score=51.03  Aligned_cols=31  Identities=10%  Similarity=-0.062  Sum_probs=27.2

Q ss_pred             cCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      +.+|+|+|+|++|+.++..|+ +|. .+++++.
T Consensus         2 ~mkI~IiGaGa~G~~~a~~L~-~g~-~V~~~~r   32 (307)
T 3ego_A            2 SLKIGIIGGGSVGLLCAYYLS-LYH-DVTVVTR   32 (307)
T ss_dssp             CCEEEEECCSHHHHHHHHHHH-TTS-EEEEECS
T ss_pred             CCEEEEECCCHHHHHHHHHHh-cCC-ceEEEEC
Confidence            468999999999999999999 885 5888776

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=95.41  E-value=0.12  Score=45.66  Aligned_cols=105  Identities=14%  Similarity=0.147  Sum_probs=62.9

Q ss_pred             cCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCc--cHHHHHHHHHHhhCCCCeEe
Q 020565           31 KSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGK--TIAEVCCDSLKDFNPMVRVS  107 (324)
Q Consensus        31 ~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~--~ka~~~~~~l~~lnp~v~v~  107 (324)
                      ..+|+|.|+ |.+|+.+++.|+..|. ++++++.+.-              .-   ..  .|++.+ +.+..  +.+  +
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~R~~~--------------~~---~~~~~~~~~~-~~l~~--~~v--~   58 (307)
T 2gas_A            2 ENKILILGPTGAIGRHIVWASIKAGN-PTYALVRKTI--------------TA---ANPETKEELI-DNYQS--LGV--I   58 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHHTC-CEEEEECCSC--------------CS---SCHHHHHHHH-HHHHH--TTC--E
T ss_pred             CcEEEEECCCchHHHHHHHHHHhCCC-cEEEEECCCc--------------cc---CChHHHHHHH-HHHHh--CCC--E
Confidence            357999997 8899999999999995 4666654210              00   11  233322 22222  233  3


Q ss_pred             EeeCCCCC--CchhhcCCccEEEEcCCC--HHHHHHHHHHHHhccCC-ccEEEeeecC
Q 020565          108 VEKGDLSS--LDGEFYDKFDVVVVSCCS--VTTKKLINEKCRKLSKR-VAFYTVDCRD  160 (324)
Q Consensus       108 ~~~~~~~~--~~~~~~~~~diVi~~~~~--~~~~~~l~~~~~~~~~~-ip~i~~~~~G  160 (324)
                      ....++.+  .....++++|+||.+...  ......+-+.|++  .+ +..+....+|
T Consensus        59 ~v~~D~~d~~~l~~~~~~~d~vi~~a~~~~~~~~~~l~~aa~~--~g~v~~~v~S~~g  114 (307)
T 2gas_A           59 LLEGDINDHETLVKAIKQVDIVICAAGRLLIEDQVKIIKAIKE--AGNVKKFFPSEFG  114 (307)
T ss_dssp             EEECCTTCHHHHHHHHTTCSEEEECSSSSCGGGHHHHHHHHHH--HCCCSEEECSCCS
T ss_pred             EEEeCCCCHHHHHHHHhCCCEEEECCcccccccHHHHHHHHHh--cCCceEEeecccc
Confidence            44455554  235667899999988753  3445567778877  55 5444333333

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=95.40  E-value=0.082  Score=47.77  Aligned_cols=32  Identities=22%  Similarity=0.162  Sum_probs=27.8

Q ss_pred             cEEEEcCchhHHHHHHHHHHhCC-CcEEEEcCC
Q 020565           33 HILVCGMKGTVAEFCKNIVLAGV-GSLTLMDDR   64 (324)
Q Consensus        33 ~VliiG~g~lGsei~k~L~~~Gv-~~i~lvD~d   64 (324)
                      +|.|+|+|.+|+.++..|+..|. .+++++|.+
T Consensus         2 kI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~   34 (310)
T 1guz_A            2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVV   34 (310)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSS
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            79999999999999999999764 469999873

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2

Probab=95.39  E-value=0.048  Score=47.77  Aligned_cols=81  Identities=17%  Similarity=0.236  Sum_probs=53.5

Q ss_pred             HHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeE
Q 020565           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRV  106 (324)
Q Consensus        28 ~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v  106 (324)
                      .|++++++|.|. ||+|.++++.|+..|.. +.++|.                      ...+.+.+.+.+.+..+..++
T Consensus        10 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r----------------------~~~~~~~~~~~~~~~~~~~~~   66 (267)
T 1iy8_A           10 RFTDRVVLITGGGSGLGRATAVRLAAEGAK-LSLVDV----------------------SSEGLEASKAAVLETAPDAEV   66 (267)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEES----------------------CHHHHHHHHHHHHHHCTTCCE
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEeC----------------------CHHHHHHHHHHHHhhcCCceE
Confidence            367788999995 78999999999999975 777654                      223445555666666545556


Q ss_pred             eEeeCCCCCC--chhh-------cCCccEEEEcC
Q 020565          107 SVEKGDLSSL--DGEF-------YDKFDVVVVSC  131 (324)
Q Consensus       107 ~~~~~~~~~~--~~~~-------~~~~diVi~~~  131 (324)
                      .....++.+.  ...+       +...|+||.+.
T Consensus        67 ~~~~~D~~~~~~v~~~~~~~~~~~g~id~lv~nA  100 (267)
T 1iy8_A           67 LTTVADVSDEAQVEAYVTATTERFGRIDGFFNNA  100 (267)
T ss_dssp             EEEECCTTSHHHHHHHHHHHHHHHSCCSEEEECC
T ss_pred             EEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            6665565542  1222       23678888764

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=95.38  E-value=0.047  Score=46.15  Aligned_cols=100  Identities=14%  Similarity=0.128  Sum_probs=61.8

Q ss_pred             CcEEEEcC-chhHHHHHHHHH-HhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEe
Q 020565           32 SHILVCGM-KGTVAEFCKNIV-LAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVE  109 (324)
Q Consensus        32 ~~VliiG~-g~lGsei~k~L~-~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~  109 (324)
                      ++|+|.|+ |++|..+++.|+ ..|. ++++++.+.-+                     +.+    .+.+..+  .+...
T Consensus         6 k~vlVtGasg~iG~~~~~~l~~~~g~-~V~~~~r~~~~---------------------~~~----~~~~~~~--~~~~~   57 (221)
T 3r6d_A            6 XYITILGAAGQIAQXLTATLLTYTDM-HITLYGRQLKT---------------------RIP----PEIIDHE--RVTVI   57 (221)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHHCCC-EEEEEESSHHH---------------------HSC----HHHHTST--TEEEE
T ss_pred             EEEEEEeCCcHHHHHHHHHHHhcCCc-eEEEEecCccc---------------------cch----hhccCCC--ceEEE
Confidence            35999995 899999999999 8997 47777653110                     000    0111222  34455


Q ss_pred             eCCCCC--CchhhcCCccEEEEcCCC--HHHHHHHHHHHHhccCCc-cEEEeeecCce
Q 020565          110 KGDLSS--LDGEFYDKFDVVVVSCCS--VTTKKLINEKCRKLSKRV-AFYTVDCRDSC  162 (324)
Q Consensus       110 ~~~~~~--~~~~~~~~~diVi~~~~~--~~~~~~l~~~~~~~~~~i-p~i~~~~~G~~  162 (324)
                      ..++.+  .....++++|+||.+...  .. ...+-+.+++  .+. .+|+.++.+.+
T Consensus        58 ~~D~~d~~~~~~~~~~~d~vv~~ag~~n~~-~~~~~~~~~~--~~~~~iv~iSs~~~~  112 (221)
T 3r6d_A           58 EGSFQNPGXLEQAVTNAEVVFVGAMESGSD-MASIVKALSR--XNIRRVIGVSMAGLS  112 (221)
T ss_dssp             ECCTTCHHHHHHHHTTCSEEEESCCCCHHH-HHHHHHHHHH--TTCCEEEEEEETTTT
T ss_pred             ECCCCCHHHHHHHHcCCCEEEEcCCCCChh-HHHHHHHHHh--cCCCeEEEEeeceec
Confidence            555554  234567889999988763  33 4455566776  554 46666666544

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=95.35  E-value=0.059  Score=47.46  Aligned_cols=83  Identities=17%  Similarity=0.074  Sum_probs=54.0

Q ss_pred             HHHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCe
Q 020565           27 RRLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVR  105 (324)
Q Consensus        27 ~~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~  105 (324)
                      ..|++++|+|.|+ |++|.++++.|+..|.. +.++|.                      ...+.+.+.+.+++.....+
T Consensus        28 ~~l~~k~vlVTGasggIG~~la~~l~~~G~~-V~~~~r----------------------~~~~~~~~~~~~~~~~~~~~   84 (279)
T 1xg5_A           28 ERWRDRLALVTGASGGIGAAVARALVQQGLK-VVGCAR----------------------TVGNIEELAAECKSAGYPGT   84 (279)
T ss_dssp             GGGTTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEES----------------------CHHHHHHHHHHHHHTTCSSE
T ss_pred             cccCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEEC----------------------ChHHHHHHHHHHHhcCCCce
Confidence            3477889999996 78999999999999975 777654                      22244445555665544445


Q ss_pred             EeEeeCCCCCC--chhh-------cCCccEEEEcCC
Q 020565          106 VSVEKGDLSSL--DGEF-------YDKFDVVVVSCC  132 (324)
Q Consensus       106 v~~~~~~~~~~--~~~~-------~~~~diVi~~~~  132 (324)
                      +.....++.+.  ...+       +...|+||.+..
T Consensus        85 ~~~~~~Dl~~~~~v~~~~~~~~~~~g~iD~vi~~Ag  120 (279)
T 1xg5_A           85 LIPYRCDLSNEEDILSMFSAIRSQHSGVDICINNAG  120 (279)
T ss_dssp             EEEEECCTTCHHHHHHHHHHHHHHHCCCSEEEECCC
T ss_pred             EEEEEecCCCHHHHHHHHHHHHHhCCCCCEEEECCC
Confidence            55555555532  1122       236888887653

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=95.34  E-value=0.042  Score=47.85  Aligned_cols=81  Identities=19%  Similarity=0.215  Sum_probs=54.2

Q ss_pred             HHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCC-Ce
Q 020565           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPM-VR  105 (324)
Q Consensus        28 ~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~-v~  105 (324)
                      .+++++++|.|. ||+|.++++.|+..|. ++.++|.                      ...+.+.+.+.+.+.++. .+
T Consensus         4 ~~~~k~~lVTGas~GIG~aia~~l~~~G~-~V~~~~r----------------------~~~~~~~~~~~~~~~~~~~~~   60 (250)
T 3nyw_A            4 EKQKGLAIITGASQGIGAVIAAGLATDGY-RVVLIAR----------------------SKQNLEKVHDEIMRSNKHVQE   60 (250)
T ss_dssp             -CCCCEEEEESTTSHHHHHHHHHHHHHTC-EEEEEES----------------------CHHHHHHHHHHHHHHCTTSCC
T ss_pred             cCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEEC----------------------CHHHHHHHHHHHHHhccccCc
Confidence            356788999996 7899999999999998 4777765                      334566667777777654 45


Q ss_pred             EeEeeCCCCCC--chh-------hcCCccEEEEcC
Q 020565          106 VSVEKGDLSSL--DGE-------FYDKFDVVVVSC  131 (324)
Q Consensus       106 v~~~~~~~~~~--~~~-------~~~~~diVi~~~  131 (324)
                      +..+..++.+.  ...       .+...|++|.+.
T Consensus        61 ~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~lvnnA   95 (250)
T 3nyw_A           61 PIVLPLDITDCTKADTEIKDIHQKYGAVDILVNAA   95 (250)
T ss_dssp             CEEEECCTTCHHHHHHHHHHHHHHHCCEEEEEECC
T ss_pred             ceEEeccCCCHHHHHHHHHHHHHhcCCCCEEEECC
Confidence            55555555431  111       124567777664

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=95.32  E-value=0.055  Score=48.73  Aligned_cols=35  Identities=9%  Similarity=0.141  Sum_probs=30.7

Q ss_pred             hcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCc
Q 020565           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV   65 (324)
Q Consensus        30 ~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~   65 (324)
                      +..+|.|||+|.+|..++++|+..|. +++++|.+.
T Consensus         8 ~~~~IgiIG~G~mG~~~A~~l~~~G~-~V~~~dr~~   42 (306)
T 3l6d_A            8 FEFDVSVIGLGAMGTIMAQVLLKQGK-RVAIWNRSP   42 (306)
T ss_dssp             CSCSEEEECCSHHHHHHHHHHHHTTC-CEEEECSSH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCH
Confidence            45689999999999999999999997 488888754

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=95.29  E-value=0.035  Score=53.22  Aligned_cols=96  Identities=20%  Similarity=0.144  Sum_probs=70.8

Q ss_pred             hcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEe
Q 020565           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVE  109 (324)
Q Consensus        30 ~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~  109 (324)
                      ...+|+|+|.|-+|..+|+.|-. + .++++++.                      .+.|++.+++.|    |.+.  +.
T Consensus       234 ~~~~v~I~GgG~ig~~lA~~L~~-~-~~v~iIE~----------------------d~~r~~~la~~l----~~~~--Vi  283 (461)
T 4g65_A          234 PYRRIMIVGGGNIGASLAKRLEQ-T-YSVKLIER----------------------NLQRAEKLSEEL----ENTI--VF  283 (461)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHTT-T-SEEEEEES----------------------CHHHHHHHHHHC----TTSE--EE
T ss_pred             cccEEEEEcchHHHHHHHHHhhh-c-CceEEEec----------------------CHHHHHHHHHHC----CCce--EE
Confidence            35689999999999999999854 3 46888776                      556776666554    4433  33


Q ss_pred             eCCCCC---CchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEee
Q 020565          110 KGDLSS---LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVD  157 (324)
Q Consensus       110 ~~~~~~---~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~~  157 (324)
                      ..+-++   ..++-+.++|++|.++++.++.....-++++  .+++-+-+.
T Consensus       284 ~GD~td~~~L~ee~i~~~D~~ia~T~~De~Ni~~~llAk~--~gv~kvIa~  332 (461)
T 4g65_A          284 CGDAADQELLTEENIDQVDVFIALTNEDETNIMSAMLAKR--MGAKKVMVL  332 (461)
T ss_dssp             ESCTTCHHHHHHTTGGGCSEEEECCSCHHHHHHHHHHHHH--TTCSEEEEE
T ss_pred             eccccchhhHhhcCchhhcEEEEcccCcHHHHHHHHHHHH--cCCcccccc
Confidence            334333   3466678999999999999999999999999  777655443

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=95.27  E-value=0.039  Score=50.54  Aligned_cols=104  Identities=11%  Similarity=0.051  Sum_probs=59.5

Q ss_pred             cCcEEEEcCchhHHHHHHHHHHhCC------CcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHh--hCC
Q 020565           31 KSHILVCGMKGTVAEFCKNIVLAGV------GSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKD--FNP  102 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~~~Gv------~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~--lnp  102 (324)
                      ..+|.|||+|.+|+.++..|+.+|.      .+++++|.+.-.              .   ++.+++.+.+.-..  .-|
T Consensus         8 ~mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~~--------------~---~~~~~~~l~~~~~~~~~~~   70 (354)
T 1x0v_A            8 SKKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEEDI--------------G---GKKLTEIINTQHENVKYLP   70 (354)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEEECCCCBS--------------S---SSBHHHHHHHHSCCTTTST
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEcChhh--------------h---hhHHHHHHHhcCcccccCC
Confidence            3589999999999999999999993      468888763210              1   33344443321100  011


Q ss_pred             CC----eEeEeeCCCCCCchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEe
Q 020565          103 MV----RVSVEKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTV  156 (324)
Q Consensus       103 ~v----~v~~~~~~~~~~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~  156 (324)
                      ..    .+...     ....+.++++|+||.|.-+......+.++...+..+..+++.
T Consensus        71 ~~~~~~~~~~~-----~~~~~~~~~aD~Vilav~~~~~~~v~~~i~~~l~~~~ivv~~  123 (354)
T 1x0v_A           71 GHKLPPNVVAV-----PDVVQAAEDADILIFVVPHQFIGKICDQLKGHLKANATGISL  123 (354)
T ss_dssp             TCCCCTTEEEE-----SSHHHHHTTCSEEEECCCGGGHHHHHHHHTTCSCTTCEEEEC
T ss_pred             cccCccCeEEE-----cCHHHHHcCCCEEEEeCCHHHHHHHHHHHHhhCCCCCEEEEE
Confidence            11    11111     122345678999999987655555555554332234445544

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=95.26  E-value=0.022  Score=51.37  Aligned_cols=33  Identities=15%  Similarity=0.193  Sum_probs=29.5

Q ss_pred             CcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCc
Q 020565           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV   65 (324)
Q Consensus        32 ~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~   65 (324)
                      .+|.|||+|.+|+.++.+|+..|. +++++|.+.
T Consensus        31 ~~I~iIG~G~mG~~~a~~l~~~g~-~V~~~~~~~   63 (316)
T 2uyy_A           31 KKIGFLGLGLMGSGIVSNLLKMGH-TVTVWNRTA   63 (316)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTC-CEEEECSSG
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCC-EEEEEeCCH
Confidence            679999999999999999999997 488988753

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=95.24  E-value=0.13  Score=43.93  Aligned_cols=36  Identities=22%  Similarity=0.338  Sum_probs=30.4

Q ss_pred             HhcCcEEEEc-CchhHHHHHHHHHHhCCC-cEEEEcCC
Q 020565           29 LSKSHILVCG-MKGTVAEFCKNIVLAGVG-SLTLMDDR   64 (324)
Q Consensus        29 l~~~~VliiG-~g~lGsei~k~L~~~Gv~-~i~lvD~d   64 (324)
                      ++..+|+|.| .|++|..+++.|+..|.. +++++|.+
T Consensus        16 m~~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~   53 (242)
T 2bka_A           16 MQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRR   53 (242)
T ss_dssp             HTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESS
T ss_pred             hcCCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcC
Confidence            6678999999 589999999999999973 58887753

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=95.24  E-value=0.054  Score=47.52  Aligned_cols=81  Identities=17%  Similarity=0.207  Sum_probs=58.6

Q ss_pred             HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEe
Q 020565           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS  107 (324)
Q Consensus        29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~  107 (324)
                      |++++++|.|. ||+|.++++.|+..|.. +.++|.                      ...+.+...+.+.+..+...+.
T Consensus         8 l~~k~~lVTGas~gIG~aia~~l~~~G~~-V~~~~r----------------------~~~~~~~~~~~l~~~~~~~~~~   64 (267)
T 3t4x_A            8 LKGKTALVTGSTAGIGKAIATSLVAEGAN-VLINGR----------------------REENVNETIKEIRAQYPDAILQ   64 (267)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEES----------------------SHHHHHHHHHHHHHHCTTCEEE
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeC----------------------CHHHHHHHHHHHHhhCCCceEE
Confidence            56788999996 78999999999999975 777655                      3345666777788887777777


Q ss_pred             EeeCCCCCC--ch---hhcCCccEEEEcCC
Q 020565          108 VEKGDLSSL--DG---EFYDKFDVVVVSCC  132 (324)
Q Consensus       108 ~~~~~~~~~--~~---~~~~~~diVi~~~~  132 (324)
                      ....++.+.  ..   +.+...|++|.+..
T Consensus        65 ~~~~D~~~~~~~~~~~~~~g~id~lv~nAg   94 (267)
T 3t4x_A           65 PVVADLGTEQGCQDVIEKYPKVDILINNLG   94 (267)
T ss_dssp             EEECCTTSHHHHHHHHHHCCCCSEEEECCC
T ss_pred             EEecCCCCHHHHHHHHHhcCCCCEEEECCC
Confidence            776666542  11   22357788887653

>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}

Probab=95.22  E-value=0.1  Score=47.71  Aligned_cols=116  Identities=14%  Similarity=0.104  Sum_probs=66.8

Q ss_pred             HhcCcEEEEcC-chhHHHHHHHHHH--hCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCe
Q 020565           29 LSKSHILVCGM-KGTVAEFCKNIVL--AGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVR  105 (324)
Q Consensus        29 l~~~~VliiG~-g~lGsei~k~L~~--~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~  105 (324)
                      ++..+|+|.|+ |.+|+.+++.|+.  .|.. ++++|...-...-..+    ..+.+   ++         ...+. ...
T Consensus         8 ~~~~~vlVTGatG~IG~~l~~~L~~~~~g~~-V~~~~r~~~~~~~~~~----~~~~~---~~---------~~~~~-~~~   69 (362)
T 3sxp_A            8 LENQTILITGGAGFVGSNLAFHFQENHPKAK-VVVLDKFRSNTLFSNN----RPSSL---GH---------FKNLI-GFK   69 (362)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHHCTTSE-EEEEECCCCC-----------CCCC---CC---------GGGGT-TCC
T ss_pred             cCCCEEEEECCCCHHHHHHHHHHHhhCCCCe-EEEEECCCcccccccc----chhhh---hh---------hhhcc-ccC
Confidence            46689999985 8899999999999  7865 7777653221000000    00011   11         01111 123


Q ss_pred             EeEeeCCCCCC--chhh-cCCccEEEEcCCC-------HH--------HHHHHHHHHHhccCCccEEEeeecCceEE
Q 020565          106 VSVEKGDLSSL--DGEF-YDKFDVVVVSCCS-------VT--------TKKLINEKCRKLSKRVAFYTVDCRDSCGE  164 (324)
Q Consensus       106 v~~~~~~~~~~--~~~~-~~~~diVi~~~~~-------~~--------~~~~l~~~~~~~~~~ip~i~~~~~G~~g~  164 (324)
                      +.....++.+.  .... ..++|+||.+...       ..        ....+-+.|++  .++.+|++++.+.+|.
T Consensus        70 ~~~~~~Dl~d~~~~~~~~~~~~D~vih~A~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~--~~~~~V~~SS~~vyg~  144 (362)
T 3sxp_A           70 GEVIAADINNPLDLRRLEKLHFDYLFHQAAVSDTTMLNQELVMKTNYQAFLNLLEIARS--KKAKVIYASSAGVYGN  144 (362)
T ss_dssp             SEEEECCTTCHHHHHHHTTSCCSEEEECCCCCGGGCCCHHHHHHHHTHHHHHHHHHHHH--TTCEEEEEEEGGGGCS
T ss_pred             ceEEECCCCCHHHHHHhhccCCCEEEECCccCCccccCHHHHHHHHHHHHHHHHHHHHH--cCCcEEEeCcHHHhCC
Confidence            44555555542  2333 5688999977541       11        12356678888  7777999998777763

>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*

Probab=95.19  E-value=0.038  Score=49.80  Aligned_cols=34  Identities=21%  Similarity=0.225  Sum_probs=27.8

Q ss_pred             HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      |++.+|+|.|+ |++|+.+++.|+..|. +++++|.
T Consensus         1 m~~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r   35 (345)
T 2z1m_A            1 MSGKRALITGIRGQDGAYLAKLLLEKGY-EVYGADR   35 (345)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECS
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEEC
Confidence            34678999997 8899999999999996 5777765

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=95.18  E-value=0.055  Score=52.11  Aligned_cols=33  Identities=15%  Similarity=0.162  Sum_probs=29.4

Q ss_pred             CcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCc
Q 020565           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV   65 (324)
Q Consensus        32 ~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~   65 (324)
                      .+|.|||+|.+|+.++.+|+..|.. ++++|.+.
T Consensus         3 m~IgvIG~G~mG~~lA~~La~~G~~-V~v~dr~~   35 (482)
T 2pgd_A            3 ADIALIGLAVMGQNLILNMNDHGFV-VCAFNRTV   35 (482)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCC-EEEECSST
T ss_pred             CeEEEEChHHHHHHHHHHHHHCCCe-EEEEeCCH
Confidence            4799999999999999999999984 88988753

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=95.18  E-value=0.036  Score=48.44  Aligned_cols=31  Identities=13%  Similarity=0.163  Sum_probs=27.3

Q ss_pred             cEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565           33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        33 ~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      +|.|||+|.+|+.++.+|+..|...++++|.
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~r   32 (263)
T 1yqg_A            2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANR   32 (263)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEECS
T ss_pred             EEEEECchHHHHHHHHHHHHCCCCeEEEECC
Confidence            6999999999999999999999545788775

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=95.14  E-value=0.016  Score=51.55  Aligned_cols=32  Identities=16%  Similarity=0.086  Sum_probs=28.3

Q ss_pred             CcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCc
Q 020565           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV   65 (324)
Q Consensus        32 ~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~   65 (324)
                      .+|.|||+|.+|+.++++|+..|. +++++| +.
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~-~~   35 (295)
T 1yb4_A            4 MKLGFIGLGIMGSPMAINLARAGH-QLHVTT-IG   35 (295)
T ss_dssp             CEEEECCCSTTHHHHHHHHHHTTC-EEEECC-SS
T ss_pred             CEEEEEccCHHHHHHHHHHHhCCC-EEEEEc-CH
Confidence            479999999999999999999997 588888 54

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=95.10  E-value=0.022  Score=48.14  Aligned_cols=33  Identities=18%  Similarity=0.190  Sum_probs=30.1

Q ss_pred             cCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d   64 (324)
                      ...|+|||+|..|..+|..|++.|+. ++|+|..
T Consensus         2 t~dV~IIGaGpaGL~aA~~La~~G~~-V~v~Ek~   34 (336)
T 3kkj_A            2 TVPIAIIGTGIAGLSAAQALTAAGHQ-VHLFDKS   34 (336)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCC-EEEECSS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCC-EEEEECC
Confidence            45799999999999999999999996 9999974

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=95.10  E-value=0.039  Score=48.19  Aligned_cols=32  Identities=13%  Similarity=0.136  Sum_probs=27.8

Q ss_pred             CcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (324)
Q Consensus        32 ~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d   64 (324)
                      .+|.|||+|.+|..++++|...|. .++++|.+
T Consensus         4 m~i~iiG~G~mG~~~a~~l~~~g~-~v~~~~~~   35 (259)
T 2ahr_A            4 MKIGIIGVGKMASAIIKGLKQTPH-ELIISGSS   35 (259)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSSC-EEEEECSS
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCC-eEEEECCC
Confidence            479999999999999999999994 68888763

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=95.10  E-value=0.037  Score=53.37  Aligned_cols=121  Identities=12%  Similarity=0.104  Sum_probs=70.0

Q ss_pred             cCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhh-CCCCeEeEe
Q 020565           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDF-NPMVRVSVE  109 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~l-np~v~v~~~  109 (324)
                      ..+|.|||+|.+|..++.+|+..|. +++++|.+.-....+...-.   ...   +-.-+....+.+.++ .+++-+...
T Consensus         4 ~~kIgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~g~---~g~---~i~~~~s~~e~v~~l~~aDvVil~V   76 (484)
T 4gwg_A            4 QADIALIGLAVMGQNLILNMNDHGF-VVCAFNRTVSKVDDFLANEA---KGT---KVVGAQSLKEMVSKLKKPRRIILLV   76 (484)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTC-CEEEECSSTHHHHHHHHTTT---TTS---SCEECSSHHHHHHTBCSSCEEEECS
T ss_pred             CCEEEEEChhHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHhccc---CCC---ceeccCCHHHHHhhccCCCEEEEec
Confidence            4689999999999999999999997 58999876533332221100   000   000001112222322 344444333


Q ss_pred             eCC--CCCC---chhhcCCccEEEEcCCC-HHHHHHHHHHHHhccCCccEEEeeecC
Q 020565          110 KGD--LSSL---DGEFYDKFDVVVVSCCS-VTTKKLINEKCRKLSKRVAFYTVDCRD  160 (324)
Q Consensus       110 ~~~--~~~~---~~~~~~~~diVi~~~~~-~~~~~~l~~~~~~~~~~ip~i~~~~~G  160 (324)
                      +..  +...   ....++.-++||++... +.....+.+.+.+  .++.|+.+.+.|
T Consensus        77 p~~~~v~~vl~~l~~~L~~g~iIId~st~~~~~t~~~~~~l~~--~Gi~fvd~pVsG  131 (484)
T 4gwg_A           77 KAGQAVDDFIEKLVPLLDTGDIIIDGGNSEYRDTTRRCRDLKA--KGILFVGSGVSG  131 (484)
T ss_dssp             CSSHHHHHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHH--TTCEEEEEEEES
T ss_pred             CChHHHHHHHHHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHh--hccccccCCccC
Confidence            321  1111   12345677899988764 4455566677778  889999887765

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=95.10  E-value=0.08  Score=47.73  Aligned_cols=37  Identities=19%  Similarity=0.223  Sum_probs=31.1

Q ss_pred             HHHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCC
Q 020565           27 RRLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDR   64 (324)
Q Consensus        27 ~~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d   64 (324)
                      +.+++.+|+|.|+ |++|+.+++.|+..|. +++++|..
T Consensus        16 ~~~~~~~vlVTGasG~iG~~l~~~L~~~g~-~V~~~~r~   53 (330)
T 2pzm_A           16 PRGSHMRILITGGAGCLGSNLIEHWLPQGH-EILVIDNF   53 (330)
T ss_dssp             STTTCCEEEEETTTSHHHHHHHHHHGGGTC-EEEEEECC
T ss_pred             ccCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence            4577789999997 8899999999999995 57777763

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}

Probab=95.09  E-value=0.014  Score=52.96  Aligned_cols=36  Identities=14%  Similarity=0.137  Sum_probs=32.0

Q ss_pred             HHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565           28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (324)
Q Consensus        28 ~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d   64 (324)
                      .+..++|.|||+|.+|..+++.|...|. +++.+|..
T Consensus       141 ~l~g~~vgIIG~G~IG~~~A~~l~~~G~-~V~~~d~~  176 (311)
T 2cuk_A          141 DLQGLTLGLVGMGRIGQAVAKRALAFGM-RVVYHART  176 (311)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSS
T ss_pred             CCCCCEEEEEEECHHHHHHHHHHHHCCC-EEEEECCC
Confidence            5788999999999999999999999997 48888763

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=95.09  E-value=0.048  Score=47.68  Aligned_cols=81  Identities=21%  Similarity=0.224  Sum_probs=52.6

Q ss_pred             HHhcCcEEEEcC-c-hhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCe
Q 020565           28 RLSKSHILVCGM-K-GTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVR  105 (324)
Q Consensus        28 ~l~~~~VliiG~-g-~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~  105 (324)
                      .+++++|+|.|. | |+|.++++.|+..|.. +.++|.                      ...+.+.+.+.+++..+ .+
T Consensus        19 ~l~~k~vlITGasg~GIG~~~a~~l~~~G~~-V~~~~r----------------------~~~~~~~~~~~l~~~~~-~~   74 (266)
T 3o38_A           19 LLKGKVVLVTAAAGTGIGSTTARRALLEGAD-VVISDY----------------------HERRLGETRDQLADLGL-GR   74 (266)
T ss_dssp             TTTTCEEEESSCSSSSHHHHHHHHHHHTTCE-EEEEES----------------------CHHHHHHHHHHHHTTCS-SC
T ss_pred             CCCCCEEEEECCCCCchHHHHHHHHHHCCCE-EEEecC----------------------CHHHHHHHHHHHHhcCC-Cc
Confidence            367889999998 6 7999999999999976 777665                      23344555555655432 35


Q ss_pred             EeEeeCCCCCC--chhh-------cCCccEEEEcCC
Q 020565          106 VSVEKGDLSSL--DGEF-------YDKFDVVVVSCC  132 (324)
Q Consensus       106 v~~~~~~~~~~--~~~~-------~~~~diVi~~~~  132 (324)
                      +..+..++.+.  ...+       +...|+||.+..
T Consensus        75 ~~~~~~Dl~~~~~v~~~~~~~~~~~g~id~li~~Ag  110 (266)
T 3o38_A           75 VEAVVCDVTSTEAVDALITQTVEKAGRLDVLVNNAG  110 (266)
T ss_dssp             EEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             eEEEEeCCCCHHHHHHHHHHHHHHhCCCcEEEECCC
Confidence            55555555531  1111       235677776643

>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A

Probab=95.05  E-value=0.074  Score=48.39  Aligned_cols=73  Identities=16%  Similarity=0.083  Sum_probs=54.4

Q ss_pred             hcCcEEEEcCchhHHHHHHHHHHh-CCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeE
Q 020565           30 SKSHILVCGMKGTVAEFCKNIVLA-GVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV  108 (324)
Q Consensus        30 ~~~~VliiG~g~lGsei~k~L~~~-Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~  108 (324)
                      ...+|+|||+|+.|...+++|... ++.+++++|.                      ...|++.+++.+....  +.+. 
T Consensus       124 ~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r----------------------~~~~a~~la~~~~~~~--~~~~-  178 (322)
T 1omo_A          124 NSSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDV----------------------REKAAKKFVSYCEDRG--ISAS-  178 (322)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECS----------------------SHHHHHHHHHHHHHTT--CCEE-
T ss_pred             CCCEEEEEcCcHHHHHHHHHHHHhCCccEEEEECC----------------------CHHHHHHHHHHHHhcC--ceEE-
Confidence            457899999999999999999874 6888988876                      5557788887776532  2232 


Q ss_pred             eeCCCCCCchhhcCCccEEEEcCCC
Q 020565          109 EKGDLSSLDGEFYDKFDVVVVSCCS  133 (324)
Q Consensus       109 ~~~~~~~~~~~~~~~~diVi~~~~~  133 (324)
                      .     ....+.+ ++|+||.|+-+
T Consensus       179 ~-----~~~~e~v-~aDvVi~aTp~  197 (322)
T 1omo_A          179 V-----QPAEEAS-RCDVLVTTTPS  197 (322)
T ss_dssp             E-----CCHHHHT-SSSEEEECCCC
T ss_pred             E-----CCHHHHh-CCCEEEEeeCC
Confidence            1     1234566 89999999875

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=95.04  E-value=0.05  Score=49.53  Aligned_cols=34  Identities=15%  Similarity=0.121  Sum_probs=29.0

Q ss_pred             HhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565           29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        29 l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      -...+|.|||+|.+|+.++.+|+.+|. +++++|.
T Consensus        12 ~~~~kI~iIG~G~mG~ala~~L~~~G~-~V~~~~r   45 (335)
T 1z82_A           12 HMEMRFFVLGAGSWGTVFAQMLHENGE-EVILWAR   45 (335)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECS
T ss_pred             ccCCcEEEECcCHHHHHHHHHHHhCCC-eEEEEeC
Confidence            357889999999999999999999996 4888766

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=95.02  E-value=0.07  Score=46.74  Aligned_cols=80  Identities=15%  Similarity=0.115  Sum_probs=55.4

Q ss_pred             HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEe
Q 020565           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS  107 (324)
Q Consensus        29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~  107 (324)
                      |++++++|.|. ||+|.++++.|+..|.. +.++|.                      ...+.+.+.+.+.+..+..++.
T Consensus         6 l~~k~~lVTGas~GIG~aia~~l~~~G~~-V~~~~r----------------------~~~~~~~~~~~l~~~~~~~~~~   62 (265)
T 3lf2_A            6 LSEAVAVVTGGSSGIGLATVELLLEAGAA-VAFCAR----------------------DGERLRAAESALRQRFPGARLF   62 (265)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHHHTTCE-EEEEES----------------------CHHHHHHHHHHHHHHSTTCCEE
T ss_pred             cCCCEEEEeCCCChHHHHHHHHHHHCCCE-EEEEeC----------------------CHHHHHHHHHHHHHhcCCceEE
Confidence            56788999996 78999999999999985 777765                      3335566666777666665566


Q ss_pred             EeeCCCCCC--ch-------hhcCCccEEEEcC
Q 020565          108 VEKGDLSSL--DG-------EFYDKFDVVVVSC  131 (324)
Q Consensus       108 ~~~~~~~~~--~~-------~~~~~~diVi~~~  131 (324)
                      ....++.+.  ..       +.+...|++|.+.
T Consensus        63 ~~~~Dv~~~~~v~~~~~~~~~~~g~id~lvnnA   95 (265)
T 3lf2_A           63 ASVCDVLDALQVRAFAEACERTLGCASILVNNA   95 (265)
T ss_dssp             EEECCTTCHHHHHHHHHHHHHHHCSCSEEEECC
T ss_pred             EEeCCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            666666542  11       1234678887665

>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A

Probab=95.00  E-value=0.088  Score=47.65  Aligned_cols=72  Identities=18%  Similarity=0.197  Sum_probs=51.0

Q ss_pred             CcEEEEcCchhHHHHHHHHHHhCC-CcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCC---CCeEe
Q 020565           32 SHILVCGMKGTVAEFCKNIVLAGV-GSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNP---MVRVS  107 (324)
Q Consensus        32 ~~VliiG~g~lGsei~k~L~~~Gv-~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp---~v~v~  107 (324)
                      .||.|+|+|++|..++..|+..|. +++.|+|-                      .+.|++..+..|....|   .+++.
T Consensus         1 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di----------------------~~~k~~g~a~dl~~~~~~~~~~~v~   58 (310)
T 2xxj_A            1 MKVGIVGSGMVGSATAYALALLGVAREVVLVDL----------------------DRKLAQAHAEDILHATPFAHPVWVW   58 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECS----------------------SHHHHHHHHHHHHTTGGGSCCCEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeC----------------------ChhHHHHHHHHHHHhHhhcCCeEEE
Confidence            379999999999999999999875 56888876                      33355555555555433   34444


Q ss_pred             EeeCCCCCCchhhcCCccEEEEcCC
Q 020565          108 VEKGDLSSLDGEFYDKFDVVVVSCC  132 (324)
Q Consensus       108 ~~~~~~~~~~~~~~~~~diVi~~~~  132 (324)
                      .  .     ..+.++++|+||.+..
T Consensus        59 ~--~-----~~~a~~~aD~Vii~ag   76 (310)
T 2xxj_A           59 A--G-----SYGDLEGARAVVLAAG   76 (310)
T ss_dssp             E--C-----CGGGGTTEEEEEECCC
T ss_pred             E--C-----CHHHhCCCCEEEECCC
Confidence            3  1     1445889999999875

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=95.00  E-value=0.11  Score=46.08  Aligned_cols=37  Identities=24%  Similarity=0.316  Sum_probs=29.4

Q ss_pred             HHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCCc
Q 020565           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRV   65 (324)
Q Consensus        28 ~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d~   65 (324)
                      .++..+|+|.|+ |.+|+.+++.|...|. +++.+|...
T Consensus         4 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~   41 (321)
T 3vps_A            4 NTLKHRILITGGAGFIGGHLARALVASGE-EVTVLDDLR   41 (321)
T ss_dssp             ---CCEEEEETTTSHHHHHHHHHHHHTTC-CEEEECCCS
T ss_pred             ccCCCeEEEECCCChHHHHHHHHHHHCCC-EEEEEecCC
Confidence            356789999998 8899999999999997 477777643

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=94.96  E-value=0.029  Score=50.85  Aligned_cols=30  Identities=10%  Similarity=0.140  Sum_probs=27.4

Q ss_pred             cEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565           33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        33 ~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      +|.|||+|.+|+.++..|+..|. +++++|.
T Consensus         2 ~I~iiG~G~mG~~~a~~L~~~g~-~V~~~~r   31 (335)
T 1txg_A            2 IVSILGAGAMGSALSVPLVDNGN-EVRIWGT   31 (335)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCC-EEEEECC
T ss_pred             EEEEECcCHHHHHHHHHHHhCCC-eEEEEEc
Confidence            69999999999999999999996 5888876

>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A*

Probab=94.90  E-value=0.14  Score=46.25  Aligned_cols=106  Identities=9%  Similarity=0.136  Sum_probs=61.4

Q ss_pred             HHHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCe
Q 020565           27 RRLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVR  105 (324)
Q Consensus        27 ~~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~  105 (324)
                      ..++..+|+|.|+ |.+|+.+++.|...|. +++++|...-...          ..+               ..+...-.
T Consensus        23 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~----------~~~---------------~~~~~~~~   76 (343)
T 2b69_A           23 MEKDRKRILITGGAGFVGSHLTDKLMMDGH-EVTVVDNFFTGRK----------RNV---------------EHWIGHEN   76 (343)
T ss_dssp             ----CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSSCCG----------GGT---------------GGGTTCTT
T ss_pred             cccCCCEEEEEcCccHHHHHHHHHHHHCCC-EEEEEeCCCccch----------hhh---------------hhhccCCc
Confidence            4467789999997 8899999999999996 4777765211100          000               11111113


Q ss_pred             EeEeeCCCCCCchhhcCCccEEEEcCCC---------HHH--------HHHHHHHHHhccCCccEEEeeecCceE
Q 020565          106 VSVEKGDLSSLDGEFYDKFDVVVVSCCS---------VTT--------KKLINEKCRKLSKRVAFYTVDCRDSCG  163 (324)
Q Consensus       106 v~~~~~~~~~~~~~~~~~~diVi~~~~~---------~~~--------~~~l~~~~~~~~~~ip~i~~~~~G~~g  163 (324)
                      ++....++.+   ..+.++|+||.+...         +..        ...+-+.|++  .++.+|..++.+.+|
T Consensus        77 ~~~~~~D~~~---~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~--~~~~~v~~SS~~v~g  146 (343)
T 2b69_A           77 FELINHDVVE---PLYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKR--VGARLLLASTSEVYG  146 (343)
T ss_dssp             EEEEECCTTS---CCCCCCSEEEECCSCCSHHHHTTCHHHHHHHHHHHHHHHHHHHHH--HTCEEEEEEEGGGGB
T ss_pred             eEEEeCccCC---hhhcCCCEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHH--hCCcEEEECcHHHhC
Confidence            3444444332   235678999987542         111        2345567777  566888888877665

>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}

Probab=94.86  E-value=0.26  Score=43.18  Aligned_cols=95  Identities=13%  Similarity=0.061  Sum_probs=59.6

Q ss_pred             cEEEEcC-chhHHHHHHHHHHh-CCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEee
Q 020565           33 HILVCGM-KGTVAEFCKNIVLA-GVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEK  110 (324)
Q Consensus        33 ~VliiG~-g~lGsei~k~L~~~-Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~  110 (324)
                      +|+|.|+ |.+|+.+++.|... |. +++.++.+.-....+                            ..+  .++...
T Consensus         2 ~ilVtGatG~iG~~l~~~L~~~~g~-~V~~~~R~~~~~~~~----------------------------~~~--~v~~~~   50 (289)
T 3e48_A            2 NIMLTGATGHLGTHITNQAIANHID-HFHIGVRNVEKVPDD----------------------------WRG--KVSVRQ   50 (289)
T ss_dssp             CEEEETTTSHHHHHHHHHHHHTTCT-TEEEEESSGGGSCGG----------------------------GBT--TBEEEE
T ss_pred             EEEEEcCCchHHHHHHHHHhhCCCC-cEEEEECCHHHHHHh----------------------------hhC--CCEEEE
Confidence            6999996 88999999999988 65 477765532111100                            011  234444


Q ss_pred             CCCCC--CchhhcCCccEEEEcCCC-------HHHHHHHHHHHHhccCCc-cEEEeeecC
Q 020565          111 GDLSS--LDGEFYDKFDVVVVSCCS-------VTTKKLINEKCRKLSKRV-AFYTVDCRD  160 (324)
Q Consensus       111 ~~~~~--~~~~~~~~~diVi~~~~~-------~~~~~~l~~~~~~~~~~i-p~i~~~~~G  160 (324)
                      .++.+  .....++++|+||.+...       ......+-+.|++  .++ .+|+.++.|
T Consensus        51 ~D~~d~~~l~~~~~~~d~vi~~a~~~~~~~~~~~~~~~l~~aa~~--~gv~~iv~~Ss~~  108 (289)
T 3e48_A           51 LDYFNQESMVEAFKGMDTVVFIPSIIHPSFKRIPEVENLVYAAKQ--SGVAHIIFIGYYA  108 (289)
T ss_dssp             CCTTCHHHHHHHTTTCSEEEECCCCCCSHHHHHHHHHHHHHHHHH--TTCCEEEEEEESC
T ss_pred             cCCCCHHHHHHHHhCCCEEEEeCCCCccchhhHHHHHHHHHHHHH--cCCCEEEEEcccC
Confidence            55544  234567889999988653       1233466778887  665 477777654

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=94.86  E-value=0.098  Score=47.56  Aligned_cols=33  Identities=15%  Similarity=0.189  Sum_probs=29.6

Q ss_pred             cCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d   64 (324)
                      -.+|.|||+|-+|+-+|..++.+|+. ++++|.+
T Consensus         6 ~~~VaViGaG~MG~giA~~~a~~G~~-V~l~D~~   38 (319)
T 3ado_A            6 AGDVLIVGSGLVGRSWAMLFASGGFR-VKLYDIE   38 (319)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCC-EEEECSC
T ss_pred             CCeEEEECCcHHHHHHHHHHHhCCCe-EEEEECC
Confidence            35799999999999999999999997 9999874

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2

Probab=94.85  E-value=0.13  Score=45.58  Aligned_cols=99  Identities=12%  Similarity=0.101  Sum_probs=60.5

Q ss_pred             cCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEe
Q 020565           31 KSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVE  109 (324)
Q Consensus        31 ~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~  109 (324)
                      ..+|+|.|+ |.+|+.+++.|...|. ++++++.+.-.              .   ...|++.+. .+.  .+.  ++..
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~R~~~~--------------~---~~~~~~~~~-~~~--~~~--~~~~   60 (313)
T 1qyd_A            4 KSRVLIVGGTGYIGKRIVNASISLGH-PTYVLFRPEVV--------------S---NIDKVQMLL-YFK--QLG--AKLI   60 (313)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTC-CEEEECCSCCS--------------S---CHHHHHHHH-HHH--TTT--CEEE
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCC-cEEEEECCCcc--------------c---chhHHHHHH-HHH--hCC--eEEE
Confidence            368999996 8899999999999995 47776542100              0   011332221 121  233  3444


Q ss_pred             eCCCCC--CchhhcCCccEEEEcCC------CHHHHHHHHHHHHhccCC-ccEE
Q 020565          110 KGDLSS--LDGEFYDKFDVVVVSCC------SVTTKKLINEKCRKLSKR-VAFY  154 (324)
Q Consensus       110 ~~~~~~--~~~~~~~~~diVi~~~~------~~~~~~~l~~~~~~~~~~-ip~i  154 (324)
                      ..++.+  .....++++|+||.+..      +......+-+.|++  .+ +..+
T Consensus        61 ~~D~~d~~~l~~~~~~~d~vi~~a~~~~~~~~~~~~~~l~~aa~~--~g~v~~~  112 (313)
T 1qyd_A           61 EASLDDHQRLVDALKQVDVVISALAGGVLSHHILEQLKLVEAIKE--AGNIKRF  112 (313)
T ss_dssp             CCCSSCHHHHHHHHTTCSEEEECCCCSSSSTTTTTHHHHHHHHHH--SCCCSEE
T ss_pred             eCCCCCHHHHHHHHhCCCEEEECCccccchhhHHHHHHHHHHHHh--cCCCceE
Confidence            455554  23466789999998865      23445667788888  66 5544

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=94.83  E-value=0.021  Score=52.74  Aligned_cols=35  Identities=17%  Similarity=0.181  Sum_probs=31.1

Q ss_pred             HHhcCcEEEEcCchhHHHHHHHHH-HhCCCcEEEEcC
Q 020565           28 RLSKSHILVCGMKGTVAEFCKNIV-LAGVGSLTLMDD   63 (324)
Q Consensus        28 ~l~~~~VliiG~g~lGsei~k~L~-~~Gv~~i~lvD~   63 (324)
                      .|..++|.|||+|.+|..+++.|. ..|. ++..+|.
T Consensus       160 ~l~g~~vgIIG~G~IG~~vA~~l~~~~G~-~V~~~d~  195 (348)
T 2w2k_A          160 NPRGHVLGAVGLGAIQKEIARKAVHGLGM-KLVYYDV  195 (348)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTCC-EEEEECS
T ss_pred             CCCCCEEEEEEECHHHHHHHHHHHHhcCC-EEEEECC
Confidence            478899999999999999999999 8897 4777776

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=94.82  E-value=0.036  Score=48.07  Aligned_cols=79  Identities=15%  Similarity=0.192  Sum_probs=52.5

Q ss_pred             HHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeE
Q 020565           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRV  106 (324)
Q Consensus        28 ~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v  106 (324)
                      ++++++|+|.|+ ||+|.++++.|+..|.. +.++|.                      ...+.+.+.+.+++..+  ++
T Consensus         6 ~~~~k~vlITGas~giG~~~a~~l~~~G~~-V~~~~r----------------------~~~~~~~~~~~~~~~~~--~~   60 (253)
T 3qiv_A            6 RFENKVGIVTGSGGGIGQAYAEALAREGAA-VVVADI----------------------NAEAAEAVAKQIVADGG--TA   60 (253)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEES----------------------CHHHHHHHHHHHHHTTC--EE
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHHCCCE-EEEEcC----------------------CHHHHHHHHHHHHhcCC--cE
Confidence            467889999996 78999999999999976 777765                      33345555666665544  44


Q ss_pred             eEeeCCCCCC--chhh-------cCCccEEEEcC
Q 020565          107 SVEKGDLSSL--DGEF-------YDKFDVVVVSC  131 (324)
Q Consensus       107 ~~~~~~~~~~--~~~~-------~~~~diVi~~~  131 (324)
                      .....++.+.  ...+       +...|+||.+.
T Consensus        61 ~~~~~D~~~~~~~~~~~~~~~~~~g~id~li~~A   94 (253)
T 3qiv_A           61 ISVAVDVSDPESAKAMADRTLAEFGGIDYLVNNA   94 (253)
T ss_dssp             EEEECCTTSHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             EEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            4455555431  1122       23678888764

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=94.81  E-value=0.089  Score=46.65  Aligned_cols=105  Identities=17%  Similarity=0.153  Sum_probs=61.3

Q ss_pred             cCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhh-CCCCeEeE
Q 020565           31 KSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDF-NPMVRVSV  108 (324)
Q Consensus        31 ~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~l-np~v~v~~  108 (324)
                      ..+|+|.|+ |.+|+.+++.|...|. ++++++.+.-..    +            ...|++.    ++++ .+.+  +.
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~l~R~~~~~----~------------~~~~~~~----~~~l~~~~v--~~   60 (308)
T 1qyc_A            4 RSRILLIGATGYIGRHVAKASLDLGH-PTFLLVRESTAS----S------------NSEKAQL----LESFKASGA--NI   60 (308)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTC-CEEEECCCCCTT----T------------THHHHHH----HHHHHTTTC--EE
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCC-CEEEEECCcccc----c------------CHHHHHH----HHHHHhCCC--EE
Confidence            368999997 8899999999999995 466665421100    0            0112222    2222 2333  44


Q ss_pred             eeCCCCC--CchhhcCCccEEEEcCCCH--HHHHHHHHHHHhccCC-ccEEEeeecC
Q 020565          109 EKGDLSS--LDGEFYDKFDVVVVSCCSV--TTKKLINEKCRKLSKR-VAFYTVDCRD  160 (324)
Q Consensus       109 ~~~~~~~--~~~~~~~~~diVi~~~~~~--~~~~~l~~~~~~~~~~-ip~i~~~~~G  160 (324)
                      ...++.+  .....++++|+||.+....  .....+-+.|++  .+ ++.+..+++|
T Consensus        61 v~~D~~d~~~l~~~~~~~d~vi~~a~~~~~~~~~~l~~aa~~--~g~v~~~v~S~~g  115 (308)
T 1qyc_A           61 VHGSIDDHASLVEAVKNVDVVISTVGSLQIESQVNIIKAIKE--VGTVKRFFPSEFG  115 (308)
T ss_dssp             ECCCTTCHHHHHHHHHTCSEEEECCCGGGSGGGHHHHHHHHH--HCCCSEEECSCCS
T ss_pred             EEeccCCHHHHHHHHcCCCEEEECCcchhhhhHHHHHHHHHh--cCCCceEeecccc
Confidence            4455544  2345567899999987643  334566678877  55 5444333333

>3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} SCOP: c.2.1.0

Probab=94.80  E-value=0.11  Score=46.23  Aligned_cols=30  Identities=17%  Similarity=0.219  Sum_probs=24.1

Q ss_pred             CcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           32 SHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        32 ~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      ++|+|.|+ |.+|+.+++.|...|  .++.++.
T Consensus         2 ~~vlVTGatG~iG~~l~~~L~~~g--~~v~~~~   32 (313)
T 3ehe_A            2 SLIVVTGGAGFIGSHVVDKLSESN--EIVVIDN   32 (313)
T ss_dssp             -CEEEETTTSHHHHHHHHHHTTTS--CEEEECC
T ss_pred             CEEEEECCCchHHHHHHHHHHhCC--CEEEEEc
Confidence            37999996 889999999999999  4555543

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=94.80  E-value=0.089  Score=50.58  Aligned_cols=31  Identities=19%  Similarity=0.272  Sum_probs=28.3

Q ss_pred             cEEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565           33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (324)
Q Consensus        33 ~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d   64 (324)
                      +|.|||+|.+|+.++.+|+..|.. ++++|.+
T Consensus         3 kIgVIG~G~mG~~lA~~La~~G~~-V~v~dr~   33 (478)
T 1pgj_A            3 DVGVVGLGVMGANLALNIAEKGFK-VAVFNRT   33 (478)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCC-EEEECSS
T ss_pred             EEEEEChHHHHHHHHHHHHHCCCE-EEEEeCC
Confidence            799999999999999999999974 8898874

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=94.78  E-value=0.08  Score=50.18  Aligned_cols=32  Identities=16%  Similarity=0.074  Sum_probs=28.8

Q ss_pred             cEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCc
Q 020565           33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV   65 (324)
Q Consensus        33 ~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~   65 (324)
                      +|.|||+|.+|..++..|+..|. +++++|.+.
T Consensus         2 kI~VIG~G~vG~~~A~~la~~G~-~V~~~d~~~   33 (436)
T 1mv8_A            2 RISIFGLGYVGAVCAGCLSARGH-EVIGVDVSS   33 (436)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTC-EEEEECSCH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCC-EEEEEECCH
Confidence            69999999999999999999997 489998754

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=94.73  E-value=0.068  Score=51.44  Aligned_cols=41  Identities=7%  Similarity=-0.014  Sum_probs=33.5

Q ss_pred             hcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccC
Q 020565           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAW   71 (324)
Q Consensus        30 ~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl   71 (324)
                      -+.+|.|||+|.+|..++..|+..|.. ++++|.+.-..+.+
T Consensus         7 ~~~~I~VIG~G~vG~~lA~~la~~G~~-V~~~d~~~~~v~~l   47 (478)
T 2y0c_A            7 GSMNLTIIGSGSVGLVTGACLADIGHD-VFCLDVDQAKIDIL   47 (478)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCE-EEEECSCHHHHHHH
T ss_pred             CCceEEEECcCHHHHHHHHHHHhCCCE-EEEEECCHHHHHHH
Confidence            467899999999999999999999974 99998764333333

>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*

Probab=94.73  E-value=0.087  Score=46.03  Aligned_cols=103  Identities=13%  Similarity=0.023  Sum_probs=59.7

Q ss_pred             cEEEEcC-chhHHHHHHHHHHh-CCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEee
Q 020565           33 HILVCGM-KGTVAEFCKNIVLA-GVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEK  110 (324)
Q Consensus        33 ~VliiG~-g~lGsei~k~L~~~-Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~  110 (324)
                      ||.|+|+ |.+|..+++.+... |..-+-++|..               +|+           .+ +....+++-|++..
T Consensus         2 kV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~~---------------~dl-----------~~-~~~~~~DvvIDfT~   54 (245)
T 1p9l_A            2 RVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAG---------------DPL-----------SL-LTDGNTEVVIDFTH   54 (245)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHCTTCEEEEEECTT---------------CCT-----------HH-HHHTTCCEEEECSC
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCCEEEEEEccC---------------CCH-----------HH-HhccCCcEEEEccC
Confidence            6999997 99999999998865 76544456642               233           01 11124555554432


Q ss_pred             CCCC-CCchhhc-CCccEEEEcCC-CHHHHHHHHHHHHhccC-CccEEEeeecCceEE
Q 020565          111 GDLS-SLDGEFY-DKFDVVVVSCC-SVTTKKLINEKCRKLSK-RVAFYTVDCRDSCGE  164 (324)
Q Consensus       111 ~~~~-~~~~~~~-~~~diVi~~~~-~~~~~~~l~~~~~~~~~-~ip~i~~~~~G~~g~  164 (324)
                      .... ++....+ .+.++|+.++. +.+....|.+.|++  . ++|++.+..++.-..
T Consensus        55 p~a~~~~~~~a~~~g~~~VigTTG~~~e~~~~l~~aa~~--~~~~~vv~a~N~siGv~  110 (245)
T 1p9l_A           55 PDVVMGNLEFLIDNGIHAVVGTTGFTAERFQQVESWLVA--KPNTSVLIAPNFAIGAV  110 (245)
T ss_dssp             TTTHHHHHHHHHHTTCEEEECCCCCCHHHHHHHHHHHHT--STTCEEEECSCCCHHHH
T ss_pred             hHHHHHHHHHHHHcCCCEEEcCCCCCHHHHHHHHHHHHh--CCCCCEEEECCccHHHH
Confidence            2211 1111112 45677777664 44555677778875  5 777777766655443

>4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae}

Probab=94.72  E-value=0.043  Score=51.36  Aligned_cols=107  Identities=10%  Similarity=0.037  Sum_probs=62.6

Q ss_pred             CcEEEEcCchhHHHHHHHHHHhCCC-------cEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHh--hC-
Q 020565           32 SHILVCGMKGTVAEFCKNIVLAGVG-------SLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKD--FN-  101 (324)
Q Consensus        32 ~~VliiG~g~lGsei~k~L~~~Gv~-------~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~--ln-  101 (324)
                      .||.|+|+|+.|+.+|+.|+..|-+       .++++-.+.               ++.  ++.-+    +.+++  .| 
T Consensus        35 ~KI~ViGaGsWGTALA~~la~ng~~~~~~~~~~V~lw~r~~---------------e~~--~~~~~----e~in~~~~N~   93 (391)
T 4fgw_A           35 FKVTVIGSGNWGTTIAKVVAENCKGYPEVFAPIVQMWVFEE---------------EIN--GEKLT----EIINTRHQNV   93 (391)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHCTTTEEEEEEEECCCC---------------BSS--SCBHH----HHHTTTCCBT
T ss_pred             CeEEEECcCHHHHHHHHHHHHcCCCccccCCceEEEEEcch---------------Hhh--hHHHH----HHHHhcCcCc
Confidence            3899999999999999999998743       367764321               110  11111    11111  11 


Q ss_pred             ---CCCeEeEeeCCCCCCchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEeeecCc
Q 020565          102 ---PMVRVSVEKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDS  161 (324)
Q Consensus       102 ---p~v~v~~~~~~~~~~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~~~~G~  161 (324)
                         |.+++.. .-..+....+.++++|+||.+.-+...+..+.++...+..+.++|++ +-|+
T Consensus        94 ~YLpgv~Lp~-~i~~t~dl~~al~~ad~ii~avPs~~~r~~l~~l~~~~~~~~~iv~~-~KGi  154 (391)
T 4fgw_A           94 KYLPGITLPD-NLVANPDLIDSVKDVDIIVFNIPHQFLPRICSQLKGHVDSHVRAISC-LKGF  154 (391)
T ss_dssp             TTBTTCCCCS-SEEEESCHHHHHTTCSEEEECSCGGGHHHHHHHHTTTSCTTCEEEEC-CCSC
T ss_pred             ccCCCCcCCC-CcEEeCCHHHHHhcCCEEEEECChhhhHHHHHHhccccCCCceeEEe-cccc
Confidence               2222210 00011234566889999999998887777777765443456666654 3554

>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A*

Probab=94.72  E-value=0.089  Score=46.72  Aligned_cols=96  Identities=13%  Similarity=0.100  Sum_probs=55.9

Q ss_pred             cCcEEEEcC-chhHHHHHHHHHH-hCCCcEEEEcCCccc--cccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeE
Q 020565           31 KSHILVCGM-KGTVAEFCKNIVL-AGVGSLTLMDDRVVT--EEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRV  106 (324)
Q Consensus        31 ~~~VliiG~-g~lGsei~k~L~~-~Gv~~i~lvD~d~v~--~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v  106 (324)
                      +-||.|+|+ |.+|..+++.+.. .|+.=+-++|.+.-.  ..++...       .   |.             .+ ..+
T Consensus         5 ~mkV~V~Ga~G~mG~~~~~~~~~~~~~elva~~d~~~~~~~g~d~~~~-------~---g~-------------~~-~~v   60 (273)
T 1dih_A            5 NIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGEL-------A---GA-------------GK-TGV   60 (273)
T ss_dssp             BEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCS-------S---SS-------------SC-CSC
T ss_pred             CcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCchhhhhhhHHHH-------c---CC-------------Cc-CCc
Confidence            358999999 9999999999874 343322255653211  1111110       0   10             00 011


Q ss_pred             eEeeCCCCCCchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEeee
Q 020565          107 SVEKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDC  158 (324)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~~~  158 (324)
                      ... .+    .++.+.++|+||+++ +++....+-..|.+  +++|++...+
T Consensus        61 ~~~-~d----l~~~l~~~DvVIDft-~p~~~~~~~~~a~~--~G~~vVigTt  104 (273)
T 1dih_A           61 TVQ-SS----LDAVKDDFDVFIDFT-RPEGTLNHLAFCRQ--HGKGMVIGTT  104 (273)
T ss_dssp             CEE-SC----STTTTTSCSEEEECS-CHHHHHHHHHHHHH--TTCEEEECCC
T ss_pred             eec-CC----HHHHhcCCCEEEEcC-ChHHHHHHHHHHHh--CCCCEEEECC
Confidence            111 12    234456889999888 45566777788988  9999876554

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=94.70  E-value=0.022  Score=50.15  Aligned_cols=35  Identities=14%  Similarity=0.330  Sum_probs=31.9

Q ss_pred             HhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565           29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (324)
Q Consensus        29 l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d   64 (324)
                      +++ +|+|+|+|+.|..++..|...|++++++++.+
T Consensus       107 ~~~-~vliiGaGg~a~ai~~~L~~~G~~~I~v~nR~  141 (253)
T 3u62_A          107 VKE-PVVVVGAGGAARAVIYALLQMGVKDIWVVNRT  141 (253)
T ss_dssp             CCS-SEEEECCSHHHHHHHHHHHHTTCCCEEEEESC
T ss_pred             CCC-eEEEECcHHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            456 99999999999999999999999999998774

>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A*

Probab=94.68  E-value=0.22  Score=45.70  Aligned_cols=107  Identities=16%  Similarity=0.181  Sum_probs=62.5

Q ss_pred             HHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeE
Q 020565           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRV  106 (324)
Q Consensus        28 ~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v  106 (324)
                      +++..+|+|.|+ |.+|+.+++.|...|..+++++|...-...          ..+   -               ..-.+
T Consensus        29 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~----------~~l---~---------------~~~~v   80 (377)
T 2q1s_A           29 KLANTNVMVVGGAGFVGSNLVKRLLELGVNQVHVVDNLLSAEK----------INV---P---------------DHPAV   80 (377)
T ss_dssp             GGTTCEEEEETTTSHHHHHHHHHHHHTTCSEEEEECCCTTCCG----------GGS---C---------------CCTTE
T ss_pred             HhCCCEEEEECCccHHHHHHHHHHHHcCCceEEEEECCCCCch----------hhc---c---------------CCCce
Confidence            356678999996 889999999999999445777765321110          000   0               01133


Q ss_pred             eEeeCCCCCC--chhhcCCccEEEEcCCCH--H---------------HHHHHHHHHHhccC-Cc-cEEEeeecCceEE
Q 020565          107 SVEKGDLSSL--DGEFYDKFDVVVVSCCSV--T---------------TKKLINEKCRKLSK-RV-AFYTVDCRDSCGE  164 (324)
Q Consensus       107 ~~~~~~~~~~--~~~~~~~~diVi~~~~~~--~---------------~~~~l~~~~~~~~~-~i-p~i~~~~~G~~g~  164 (324)
                      +....++.+.  ....++++|+||.+....  .               ....+-+.|++  . ++ .||++++.+.+|.
T Consensus        81 ~~~~~Dl~d~~~l~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~--~~~~~~~V~~SS~~vyg~  157 (377)
T 2q1s_A           81 RFSETSITDDALLASLQDEYDYVFHLATYHGNQSSIHDPLADHENNTLTTLKLYERLKH--FKRLKKVVYSAAGCSIAE  157 (377)
T ss_dssp             EEECSCTTCHHHHHHCCSCCSEEEECCCCSCHHHHHHCHHHHHHHHTHHHHHHHHHHTT--CSSCCEEEEEEEC-----
T ss_pred             EEEECCCCCHHHHHHHhhCCCEEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHH--hCCCCeEEEeCCHHHcCC
Confidence            4444455431  245567899999876421  1               12345567777  5 54 6888887766653

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=94.67  E-value=0.099  Score=45.63  Aligned_cols=30  Identities=10%  Similarity=0.151  Sum_probs=26.0

Q ss_pred             cEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565           33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        33 ~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      +|.|||+|.+|+.++.+|+..|. +++++|.
T Consensus         2 ~I~iIG~G~mG~~la~~l~~~g~-~V~~~~~   31 (264)
T 1i36_A            2 RVGFIGFGEVAQTLASRLRSRGV-EVVTSLE   31 (264)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTC-EEEECCT
T ss_pred             eEEEEechHHHHHHHHHHHHCCC-eEEEeCC
Confidence            69999999999999999999997 4666544

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}

Probab=94.67  E-value=0.027  Score=51.85  Aligned_cols=37  Identities=11%  Similarity=0.104  Sum_probs=32.2

Q ss_pred             HHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565           27 RRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (324)
Q Consensus        27 ~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d   64 (324)
                      ..|..++|.|||+|.+|..+|+.|...|.. +..+|..
T Consensus       169 ~~l~gktvGIIGlG~IG~~vA~~l~~~G~~-V~~~dr~  205 (345)
T 4g2n_A          169 MGLTGRRLGIFGMGRIGRAIATRARGFGLA-IHYHNRT  205 (345)
T ss_dssp             CCCTTCEEEEESCSHHHHHHHHHHHTTTCE-EEEECSS
T ss_pred             cccCCCEEEEEEeChhHHHHHHHHHHCCCE-EEEECCC
Confidence            358889999999999999999999999974 7777763

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=94.66  E-value=0.062  Score=50.27  Aligned_cols=30  Identities=17%  Similarity=0.311  Sum_probs=26.5

Q ss_pred             CcEEEEcCchhHHHHHHHHHH-hCCCcEEEEc
Q 020565           32 SHILVCGMKGTVAEFCKNIVL-AGVGSLTLMD   62 (324)
Q Consensus        32 ~~VliiG~g~lGsei~k~L~~-~Gv~~i~lvD   62 (324)
                      .+|+|||+|.+|+.++..|+. +|. +++++|
T Consensus         3 mkI~ViGaG~~G~~~a~~La~~~G~-~V~~~~   33 (404)
T 3c7a_A            3 VKVCVCGGGNGAHTLSGLAASRDGV-EVRVLT   33 (404)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSTTE-EEEEEC
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCC-EEEEEe
Confidence            379999999999999999998 586 588887

>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix}

Probab=94.63  E-value=0.1  Score=45.38  Aligned_cols=34  Identities=15%  Similarity=0.119  Sum_probs=28.7

Q ss_pred             HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      +++++|+|.|. |++|.++++.|+..|.. +.++|.
T Consensus         5 l~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r   39 (260)
T 2z1n_A            5 IQGKLAVVTAGSSGLGFASALELARNGAR-LLLFSR   39 (260)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEeC
Confidence            46678999996 78999999999999974 777665

>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*

Probab=94.61  E-value=0.17  Score=43.67  Aligned_cols=35  Identities=11%  Similarity=0.339  Sum_probs=29.8

Q ss_pred             HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      |++++|+|.|. |++|.++++.|+..|...+.++|.
T Consensus         3 l~~k~vlVtGas~gIG~~~a~~l~~~G~~~v~~~~r   38 (254)
T 1sby_A            3 LTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDR   38 (254)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEES
T ss_pred             CCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEec
Confidence            46788999995 789999999999999876777765

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=94.55  E-value=0.13  Score=45.66  Aligned_cols=82  Identities=22%  Similarity=0.299  Sum_probs=53.9

Q ss_pred             HHHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCe
Q 020565           27 RRLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVR  105 (324)
Q Consensus        27 ~~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~  105 (324)
                      ..+++++|+|.|+ ||+|.++++.|+..|. ++.+++.                      ...+.+.+.+.+++.++. +
T Consensus         8 ~~~~~k~vlITGas~GIG~~~a~~L~~~G~-~V~~~~r----------------------~~~~~~~~~~~l~~~~~~-~   63 (311)
T 3o26_A            8 TVTKRRCAVVTGGNKGIGFEICKQLSSNGI-MVVLTCR----------------------DVTKGHEAVEKLKNSNHE-N   63 (311)
T ss_dssp             ----CCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEES----------------------CHHHHHHHHHHHHTTTCC-S
T ss_pred             ccCCCcEEEEecCCchHHHHHHHHHHHCCC-EEEEEeC----------------------CHHHHHHHHHHHHhcCCC-c
Confidence            3467888999996 7899999999999997 4777655                      334556666667666542 4


Q ss_pred             EeEeeCCCCCC-c--h-------hhcCCccEEEEcCC
Q 020565          106 VSVEKGDLSSL-D--G-------EFYDKFDVVVVSCC  132 (324)
Q Consensus       106 v~~~~~~~~~~-~--~-------~~~~~~diVi~~~~  132 (324)
                      +..+..++.+. .  .       +.+...|+||.+..
T Consensus        64 ~~~~~~Dl~~~~~~v~~~~~~~~~~~g~iD~lv~nAg  100 (311)
T 3o26_A           64 VVFHQLDVTDPIATMSSLADFIKTHFGKLDILVNNAG  100 (311)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEECCC
T ss_pred             eEEEEccCCCcHHHHHHHHHHHHHhCCCCCEEEECCc
Confidence            55555565543 1  1       12347899988765

>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A*

Probab=94.51  E-value=0.11  Score=46.82  Aligned_cols=112  Identities=13%  Similarity=0.078  Sum_probs=63.7

Q ss_pred             cCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhh-CCCCeEeE
Q 020565           31 KSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDF-NPMVRVSV  108 (324)
Q Consensus        31 ~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~l-np~v~v~~  108 (324)
                      ..+|+|.|+ |.+|+.+++.|+..|. +++++|...-...+        ...    ...+    .+.+.+. .+  .++.
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~r~--------~~~----~~~~----~~~l~~~~~~--~~~~   62 (348)
T 1ek6_A            2 AEKVLVTGGAGYIGSHTVLELLEAGY-LPVVIDNFHNAFRG--------GGS----LPES----LRRVQELTGR--SVEF   62 (348)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHTTC-CEEEEECSSSSCBC--------SSS----SBHH----HHHHHHHHTC--CCEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEecCCccccc--------ccc----cHHH----HHHHHhccCC--ceEE
Confidence            468999995 8899999999999996 47777653211000        000    1111    1223322 22  3344


Q ss_pred             eeCCCCCC--chhhcC--CccEEEEcCCCH-----------------HHHHHHHHHHHhccCCc-cEEEeeecCceE
Q 020565          109 EKGDLSSL--DGEFYD--KFDVVVVSCCSV-----------------TTKKLINEKCRKLSKRV-AFYTVDCRDSCG  163 (324)
Q Consensus       109 ~~~~~~~~--~~~~~~--~~diVi~~~~~~-----------------~~~~~l~~~~~~~~~~i-p~i~~~~~G~~g  163 (324)
                      ...++.+.  ....++  ++|+||.+....                 .....+-+.|++  .++ .+|++++.+.+|
T Consensus        63 ~~~D~~~~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~--~~~~~iv~~SS~~~~g  137 (348)
T 1ek6_A           63 EEMDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKA--HGVKNLVFSSSATVYG  137 (348)
T ss_dssp             EECCTTCHHHHHHHHHHCCEEEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHH--TTCCEEEEEEEGGGGC
T ss_pred             EECCCCCHHHHHHHHHhcCCCEEEECCCCcCccchhhchHHHHHHHHHHHHHHHHHHHH--hCCCEEEEECcHHHhC
Confidence            45555542  234454  789999876421                 112344567777  554 578888777665

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=94.49  E-value=0.31  Score=46.58  Aligned_cols=32  Identities=16%  Similarity=0.218  Sum_probs=28.7

Q ss_pred             CcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (324)
Q Consensus        32 ~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d   64 (324)
                      .+|.|||+|.+|+.+|.+|+.+|. .++++|.+
T Consensus        38 ~kV~VIGaG~MG~~iA~~la~~G~-~V~l~D~~   69 (463)
T 1zcj_A           38 SSVGVLGLGTMGRGIAISFARVGI-SVVAVESD   69 (463)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTC-EEEEECSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCC-eEEEEECC
Confidence            479999999999999999999998 48888863

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=94.48  E-value=0.033  Score=51.91  Aligned_cols=37  Identities=16%  Similarity=0.336  Sum_probs=35.2

Q ss_pred             HHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565           28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (324)
Q Consensus        28 ~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d   64 (324)
                      ++.+.||+|+|+|..|..+++.|...|+++|+++|..
T Consensus       189 ~l~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~  225 (388)
T 1vl6_A          189 KIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRK  225 (388)
T ss_dssp             CTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred             CCCCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECC
Confidence            6789999999999999999999999999999999985

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=94.45  E-value=0.07  Score=46.19  Aligned_cols=34  Identities=18%  Similarity=0.197  Sum_probs=29.0

Q ss_pred             HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      +++++|+|.|+ |++|.++++.|+..|. ++.++|.
T Consensus        11 l~~k~vlItGasggiG~~la~~l~~~G~-~V~~~~r   45 (260)
T 3awd_A           11 LDNRVAIVTGGAQNIGLACVTALAEAGA-RVIIADL   45 (260)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence            56788999996 7899999999999997 4777764

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=94.43  E-value=0.13  Score=49.49  Aligned_cols=38  Identities=13%  Similarity=-0.141  Sum_probs=32.5

Q ss_pred             HhcCcEEEEcCchhHHHHHHHHHHh-CCCcEEEEcCCcc
Q 020565           29 LSKSHILVCGMKGTVAEFCKNIVLA-GVGSLTLMDDRVV   66 (324)
Q Consensus        29 l~~~~VliiG~g~lGsei~k~L~~~-Gv~~i~lvD~d~v   66 (324)
                      -.-.+|.|||+|.+|..+|.+|+.. |...++++|.+.-
T Consensus        16 ~~~mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~   54 (478)
T 3g79_A           16 GPIKKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSK   54 (478)
T ss_dssp             CSCCEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCT
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChh
Confidence            3446899999999999999999999 9745999998654

>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D

Probab=94.41  E-value=0.1  Score=45.77  Aligned_cols=97  Identities=13%  Similarity=0.107  Sum_probs=60.5

Q ss_pred             CcEEEEcC-chhHHHHHHHHHHh--CCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeE
Q 020565           32 SHILVCGM-KGTVAEFCKNIVLA--GVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV  108 (324)
Q Consensus        32 ~~VliiG~-g~lGsei~k~L~~~--Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~  108 (324)
                      .+|+|.|+ |.+|+.+++.|...  |. +++.++.+.              +        +.+    .+..  +.  ++.
T Consensus         1 ~~ilVtGatG~iG~~l~~~L~~~~~g~-~V~~~~r~~--------------~--------~~~----~l~~--~~--~~~   49 (287)
T 2jl1_A            1 FSIAVTGATGQLGGLVIQHLLKKVPAS-QIIAIVRNV--------------E--------KAS----TLAD--QG--VEV   49 (287)
T ss_dssp             CCEEETTTTSHHHHHHHHHHTTTSCGG-GEEEEESCT--------------T--------TTH----HHHH--TT--CEE
T ss_pred             CeEEEEcCCchHHHHHHHHHHHhCCCC-eEEEEEcCH--------------H--------HHh----HHhh--cC--CeE
Confidence            36999997 88999999999998  75 477766421              0        001    1111  22  333


Q ss_pred             eeCCCCC--CchhhcCCccEEEEcCC-------CHHHHHHHHHHHHhccCCc-cEEEeeecCc
Q 020565          109 EKGDLSS--LDGEFYDKFDVVVVSCC-------SVTTKKLINEKCRKLSKRV-AFYTVDCRDS  161 (324)
Q Consensus       109 ~~~~~~~--~~~~~~~~~diVi~~~~-------~~~~~~~l~~~~~~~~~~i-p~i~~~~~G~  161 (324)
                      ...++.+  .....++++|+||.+..       +......+-+.|++  .++ .+|+.++.+.
T Consensus        50 ~~~D~~d~~~l~~~~~~~d~vi~~a~~~~~~~~n~~~~~~l~~a~~~--~~~~~~v~~Ss~~~  110 (287)
T 2jl1_A           50 RHGDYNQPESLQKAFAGVSKLLFISGPHYDNTLLIVQHANVVKAARD--AGVKHIAYTGYAFA  110 (287)
T ss_dssp             EECCTTCHHHHHHHTTTCSEEEECCCCCSCHHHHHHHHHHHHHHHHH--TTCSEEEEEEETTG
T ss_pred             EEeccCCHHHHHHHHhcCCEEEEcCCCCcCchHHHHHHHHHHHHHHH--cCCCEEEEECCCCC
Confidence            4445543  23456778999987764       22334566678887  665 6777777654

>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A*

Probab=94.40  E-value=0.28  Score=43.42  Aligned_cols=30  Identities=20%  Similarity=0.302  Sum_probs=26.2

Q ss_pred             cEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           33 HILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        33 ~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      +|+|.|+ |.+|+.+++.|+..|. +++++|.
T Consensus         2 ~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r   32 (312)
T 3ko8_A            2 RIVVTGGAGFIGSHLVDKLVELGY-EVVVVDN   32 (312)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC-EEEEECC
T ss_pred             EEEEECCCChHHHHHHHHHHhCCC-EEEEEeC
Confidence            6999998 8899999999999997 4777765

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=94.38  E-value=0.12  Score=49.31  Aligned_cols=36  Identities=17%  Similarity=0.263  Sum_probs=31.9

Q ss_pred             HhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCc
Q 020565           29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV   65 (324)
Q Consensus        29 l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~   65 (324)
                      ++.++|+|+|.|+.|..+|+.|...|.. ++..|...
T Consensus         7 ~~~k~v~viG~G~sG~s~A~~l~~~G~~-V~~~D~~~   42 (451)
T 3lk7_A            7 FENKKVLVLGLARSGEAAARLLAKLGAI-VTVNDGKP   42 (451)
T ss_dssp             TTTCEEEEECCTTTHHHHHHHHHHTTCE-EEEEESSC
T ss_pred             cCCCEEEEEeeCHHHHHHHHHHHhCCCE-EEEEeCCc
Confidence            5678999999999999999999999975 88988743

>4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A*

Probab=94.37  E-value=0.057  Score=47.28  Aligned_cols=34  Identities=21%  Similarity=0.374  Sum_probs=26.1

Q ss_pred             HHHHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEE
Q 020565           26 QRRLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTL   60 (324)
Q Consensus        26 q~~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~l   60 (324)
                      +..+++++|+|.|+ ||+|.++++.|+..|.. +.+
T Consensus        21 ~~~l~~k~vlVTGas~gIG~~la~~l~~~G~~-v~i   55 (267)
T 4iiu_A           21 QSNAMSRSVLVTGASKGIGRAIARQLAADGFN-IGV   55 (267)
T ss_dssp             ----CCCEEEETTTTSHHHHHHHHHHHHTTCE-EEE
T ss_pred             ccccCCCEEEEECCCChHHHHHHHHHHHCCCE-EEE
Confidence            34577889999996 78999999999999987 434

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=94.32  E-value=0.073  Score=47.68  Aligned_cols=79  Identities=18%  Similarity=0.139  Sum_probs=51.8

Q ss_pred             HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEe
Q 020565           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS  107 (324)
Q Consensus        29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~  107 (324)
                      +++++|+|.|+ ||+|.++++.|+..|.. +.++|.                      ...+.+.+.+.+.+...  ++.
T Consensus        29 l~gk~vlVTGas~gIG~~la~~l~~~G~~-V~~~~r----------------------~~~~~~~~~~~l~~~~~--~~~   83 (301)
T 3tjr_A           29 FDGRAAVVTGGASGIGLATATEFARRGAR-LVLSDV----------------------DQPALEQAVNGLRGQGF--DAH   83 (301)
T ss_dssp             STTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEES----------------------CHHHHHHHHHHHHHTTC--CEE
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEEC----------------------CHHHHHHHHHHHHhcCC--ceE
Confidence            67789999996 78999999999999975 777655                      33355555666665543  344


Q ss_pred             EeeCCCCCC--chhh-------cCCccEEEEcCC
Q 020565          108 VEKGDLSSL--DGEF-------YDKFDVVVVSCC  132 (324)
Q Consensus       108 ~~~~~~~~~--~~~~-------~~~~diVi~~~~  132 (324)
                      ....++++.  ....       +...|+||.+..
T Consensus        84 ~~~~Dv~d~~~v~~~~~~~~~~~g~id~lvnnAg  117 (301)
T 3tjr_A           84 GVVCDVRHLDEMVRLADEAFRLLGGVDVVFSNAG  117 (301)
T ss_dssp             EEECCTTCHHHHHHHHHHHHHHHSSCSEEEECCC
T ss_pred             EEEccCCCHHHHHHHHHHHHHhCCCCCEEEECCC
Confidence            444555431  1122       236788887643

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=94.29  E-value=0.078  Score=46.58  Aligned_cols=35  Identities=17%  Similarity=0.146  Sum_probs=29.7

Q ss_pred             HHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        28 ~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      .+++++|+|.|+ |++|.++++.|+..|.. ++++|.
T Consensus        28 ~l~~k~vlITGasggIG~~la~~L~~~G~~-V~~~~r   63 (272)
T 1yb1_A           28 SVTGEIVLITGAGHGIGRLTAYEFAKLKSK-LVLWDI   63 (272)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEEc
Confidence            367889999996 78999999999999975 777765

>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*

Probab=94.27  E-value=0.051  Score=46.90  Aligned_cols=34  Identities=21%  Similarity=0.301  Sum_probs=28.9

Q ss_pred             HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      +++++|+|.|. |++|.++++.|+..|.. ++++|.
T Consensus         9 ~~~~~vlVtGasggiG~~la~~l~~~G~~-V~~~~r   43 (255)
T 1fmc_A            9 LDGKCAIITGAGAGIGKEIAITFATAGAS-VVVSDI   43 (255)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHTTTCE-EEEEES
T ss_pred             CCCCEEEEECCccHHHHHHHHHHHHCCCE-EEEEcC
Confidence            56788999996 78999999999999974 777664

>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A*

Probab=94.26  E-value=0.07  Score=48.54  Aligned_cols=36  Identities=8%  Similarity=-0.058  Sum_probs=30.4

Q ss_pred             HHHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           27 RRLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        27 ~~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      ..++..+|+|.|+ |.+|+.+++.|...|. +++++|.
T Consensus         5 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r   41 (357)
T 1rkx_A            5 SFWQGKRVFVTGHTGFKGGWLSLWLQTMGA-TVKGYSL   41 (357)
T ss_dssp             HHHTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             hhhCCCEEEEECCCchHHHHHHHHHHhCCC-eEEEEeC
Confidence            3467789999995 8899999999999996 5777765

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=94.25  E-value=0.098  Score=47.29  Aligned_cols=81  Identities=11%  Similarity=0.100  Sum_probs=54.5

Q ss_pred             HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEe
Q 020565           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS  107 (324)
Q Consensus        29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~  107 (324)
                      +++++|+|.|+ ||+|.++++.|+..|.. +.++|.                      ...+.+.+.+.+....+..++.
T Consensus         6 l~~k~vlVTGas~gIG~~la~~l~~~G~~-Vv~~~r----------------------~~~~~~~~~~~l~~~~~~~~~~   62 (319)
T 3ioy_A            6 FAGRTAFVTGGANGVGIGLVRQLLNQGCK-VAIADI----------------------RQDSIDKALATLEAEGSGPEVM   62 (319)
T ss_dssp             CTTCEEEEETTTSTHHHHHHHHHHHTTCE-EEEEES----------------------CHHHHHHHHHHHHHHTCGGGEE
T ss_pred             CCCCEEEEcCCchHHHHHHHHHHHHCCCE-EEEEEC----------------------CHHHHHHHHHHHHhcCCCCeEE
Confidence            56778999996 78999999999999985 777655                      3335555666666666545566


Q ss_pred             EeeCCCCCC--chhh-------cCCccEEEEcCC
Q 020565          108 VEKGDLSSL--DGEF-------YDKFDVVVVSCC  132 (324)
Q Consensus       108 ~~~~~~~~~--~~~~-------~~~~diVi~~~~  132 (324)
                      ....++++.  ....       +...|+||.+..
T Consensus        63 ~~~~Dl~~~~~v~~~~~~~~~~~g~id~lv~nAg   96 (319)
T 3ioy_A           63 GVQLDVASREGFKMAADEVEARFGPVSILCNNAG   96 (319)
T ss_dssp             EEECCTTCHHHHHHHHHHHHHHTCCEEEEEECCC
T ss_pred             EEECCCCCHHHHHHHHHHHHHhCCCCCEEEECCC
Confidence            666666542  1111       245688877654

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=94.23  E-value=0.06  Score=46.94  Aligned_cols=79  Identities=15%  Similarity=0.180  Sum_probs=51.1

Q ss_pred             HHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeE
Q 020565           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRV  106 (324)
Q Consensus        28 ~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v  106 (324)
                      .|++++++|.|. ||+|.++++.|+..|.. +.++|.                      ...+.+.+.+.+++..+.  +
T Consensus         9 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r----------------------~~~~~~~~~~~~~~~~~~--~   63 (256)
T 3gaf_A            9 HLNDAVAIVTGAAAGIGRAIAGTFAKAGAS-VVVTDL----------------------KSEGAEAVAAAIRQAGGK--A   63 (256)
T ss_dssp             CCTTCEEEECSCSSHHHHHHHHHHHHHTCE-EEEEES----------------------SHHHHHHHHHHHHHTTCC--E
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEeC----------------------CHHHHHHHHHHHHhcCCc--E
Confidence            367789999996 78999999999999986 777665                      233455556666665543  3


Q ss_pred             eEeeCCCCCC--chh-------hcCCccEEEEcC
Q 020565          107 SVEKGDLSSL--DGE-------FYDKFDVVVVSC  131 (324)
Q Consensus       107 ~~~~~~~~~~--~~~-------~~~~~diVi~~~  131 (324)
                      ..+..++.+.  ...       .+...|++|.+.
T Consensus        64 ~~~~~Dv~d~~~v~~~~~~~~~~~g~id~lv~nA   97 (256)
T 3gaf_A           64 IGLECNVTDEQHREAVIKAALDQFGKITVLVNNA   97 (256)
T ss_dssp             EEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             EEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            4444454431  111       123677777654

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=94.21  E-value=0.082  Score=46.72  Aligned_cols=81  Identities=15%  Similarity=0.181  Sum_probs=48.7

Q ss_pred             HHHHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCC
Q 020565           26 QRRLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMV  104 (324)
Q Consensus        26 q~~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v  104 (324)
                      +..++.++++|.|. ||+|.++++.|+..|.. +.++|.                      ...+.+.+.+.+++..+  
T Consensus        19 ~~m~~~k~~lVTGas~GIG~aia~~la~~G~~-V~~~~r----------------------~~~~~~~~~~~l~~~~~--   73 (279)
T 3sju_A           19 SHMSRPQTAFVTGVSSGIGLAVARTLAARGIA-VYGCAR----------------------DAKNVSAAVDGLRAAGH--   73 (279)
T ss_dssp             ------CEEEEESTTSHHHHHHHHHHHHTTCE-EEEEES----------------------CHHHHHHHHHHHHTTTC--
T ss_pred             ccccCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEeC----------------------CHHHHHHHHHHHHhcCC--
Confidence            34567788999996 78999999999999976 777665                      33355556666665544  


Q ss_pred             eEeEeeCCCCCC--ch-------hhcCCccEEEEcC
Q 020565          105 RVSVEKGDLSSL--DG-------EFYDKFDVVVVSC  131 (324)
Q Consensus       105 ~v~~~~~~~~~~--~~-------~~~~~~diVi~~~  131 (324)
                      ++.....++++.  ..       +.+...|++|.+.
T Consensus        74 ~~~~~~~Dv~d~~~v~~~~~~~~~~~g~id~lv~nA  109 (279)
T 3sju_A           74 DVDGSSCDVTSTDEVHAAVAAAVERFGPIGILVNSA  109 (279)
T ss_dssp             CEEEEECCTTCHHHHHHHHHHHHHHHCSCCEEEECC
T ss_pred             cEEEEECCCCCHHHHHHHHHHHHHHcCCCcEEEECC
Confidence            344444455431  11       1224667777664

>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*

Probab=94.20  E-value=0.27  Score=45.20  Aligned_cols=100  Identities=11%  Similarity=-0.019  Sum_probs=60.9

Q ss_pred             cCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEe
Q 020565           31 KSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVE  109 (324)
Q Consensus        31 ~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~  109 (324)
                      ..+|+|.|+ |.+|+.+++.|+..|. +++++|.+.-....           .                 ..+  .++..
T Consensus        29 ~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~-----------~-----------------~~~--~v~~~   77 (379)
T 2c5a_A           29 NLKISITGAGGFIASHIARRLKHEGH-YVIASDWKKNEHMT-----------E-----------------DMF--CDEFH   77 (379)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCCSSSC-----------G-----------------GGT--CSEEE
T ss_pred             CCeEEEECCccHHHHHHHHHHHHCCC-eEEEEECCCccchh-----------h-----------------ccC--CceEE
Confidence            468999997 8899999999999996 57777653211100           0                 011  22333


Q ss_pred             eCCCCC--CchhhcCCccEEEEcCCC----------HHH--------HHHHHHHHHhccCCc-cEEEeeecCceE
Q 020565          110 KGDLSS--LDGEFYDKFDVVVVSCCS----------VTT--------KKLINEKCRKLSKRV-AFYTVDCRDSCG  163 (324)
Q Consensus       110 ~~~~~~--~~~~~~~~~diVi~~~~~----------~~~--------~~~l~~~~~~~~~~i-p~i~~~~~G~~g  163 (324)
                      ..++.+  .....++++|+||.+...          ...        ...+-+.|++  .++ .||+.++.+.+|
T Consensus        78 ~~Dl~d~~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~--~~~~~~V~~SS~~v~~  150 (379)
T 2c5a_A           78 LVDLRVMENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARI--NGIKRFFYASSACIYP  150 (379)
T ss_dssp             ECCTTSHHHHHHHHTTCSEEEECCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHH--TTCSEEEEEEEGGGSC
T ss_pred             ECCCCCHHHHHHHhCCCCEEEECceecCcccccccCHHHHHHHHHHHHHHHHHHHHH--cCCCEEEEEeehheeC
Confidence            444443  124456788888877531          111        1345567777  665 688888776655

>4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis}

Probab=94.16  E-value=0.18  Score=48.27  Aligned_cols=123  Identities=16%  Similarity=0.119  Sum_probs=66.2

Q ss_pred             HhcCcEEEEcC-chhHHHHHHHHHHh---CCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCC
Q 020565           29 LSKSHILVCGM-KGTVAEFCKNIVLA---GVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMV  104 (324)
Q Consensus        29 l~~~~VliiG~-g~lGsei~k~L~~~---Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v  104 (324)
                      .+..+|+|.|+ |.+|+++++.|+..   |. ++++++...-....+.+  +.  +..   .....+. .+.+.+.. .-
T Consensus        71 ~~~~~VLVTGatG~IG~~l~~~Ll~~~~~g~-~V~~l~R~~~~~~~~~~--l~--~~~---~~~~~~~-~~~~~~~~-~~  140 (478)
T 4dqv_A           71 PELRTVLLTGATGFLGRYLVLELLRRLDVDG-RLICLVRAESDEDARRR--LE--KTF---DSGDPEL-LRHFKELA-AD  140 (478)
T ss_dssp             SCCCEEEEECTTSHHHHHHHHHHHHHSCTTC-EEEEEECSSSHHHHHHH--HH--GGG---CSSCHHH-HHHHHHHH-TT
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHhcCCCCC-EEEEEECCCCcHHHHHH--HH--HHH---Hhcchhh-hhhhhhhc-cC
Confidence            45678999996 88999999999998   54 57776652211100000  00  000   0000000 01111111 12


Q ss_pred             eEeEeeCCCCC--------CchhhcCCccEEEEcCCC-------------HHHHHHHHHHHHhccCCc-cEEEeeecCce
Q 020565          105 RVSVEKGDLSS--------LDGEFYDKFDVVVVSCCS-------------VTTKKLINEKCRKLSKRV-AFYTVDCRDSC  162 (324)
Q Consensus       105 ~v~~~~~~~~~--------~~~~~~~~~diVi~~~~~-------------~~~~~~l~~~~~~~~~~i-p~i~~~~~G~~  162 (324)
                      +++....++.+        .....++..|+||.+...             ......+-+.|++  .++ .||++++.+.+
T Consensus       141 ~v~~v~~Dl~~~~~gld~~~~~~~~~~~D~Vih~Aa~~~~~~~~~~~~~Nv~gt~~ll~aa~~--~~~~~~V~iSS~~v~  218 (478)
T 4dqv_A          141 RLEVVAGDKSEPDLGLDQPMWRRLAETVDLIVDSAAMVNAFPYHELFGPNVAGTAELIRIALT--TKLKPFTYVSTADVG  218 (478)
T ss_dssp             TEEEEECCTTSGGGGCCHHHHHHHHHHCCEEEECCSSCSBSSCCEEHHHHHHHHHHHHHHHTS--SSCCCEEEEEEGGGG
T ss_pred             ceEEEEeECCCcccCCCHHHHHHHHcCCCEEEECccccCCcCHHHHHHHHHHHHHHHHHHHHh--CCCCeEEEEeehhhc
Confidence            45556666642        123445678999977532             2223456678877  664 78888887655


Q ss_pred             E
Q 020565          163 G  163 (324)
Q Consensus       163 g  163 (324)
                      |
T Consensus       219 ~  219 (478)
T 4dqv_A          219 A  219 (478)
T ss_dssp             T
T ss_pred             C
Confidence            4

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=94.15  E-value=0.046  Score=47.82  Aligned_cols=81  Identities=17%  Similarity=0.137  Sum_probs=52.9

Q ss_pred             HHHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCe
Q 020565           27 RRLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVR  105 (324)
Q Consensus        27 ~~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~  105 (324)
                      ..+++++|+|.|+ ||+|.++++.|+..|.. +.++|.                      ...+.+.+.+.+.+..+  +
T Consensus        25 ~~l~~k~vlITGas~gIG~~la~~l~~~G~~-V~~~~r----------------------~~~~~~~~~~~~~~~~~--~   79 (262)
T 3rkr_A           25 SSLSGQVAVVTGASRGIGAAIARKLGSLGAR-VVLTAR----------------------DVEKLRAVEREIVAAGG--E   79 (262)
T ss_dssp             CTTTTCEEEESSTTSHHHHHHHHHHHHTTCE-EEEEES----------------------CHHHHHHHHHHHHHTTC--E
T ss_pred             hccCCCEEEEECCCChHHHHHHHHHHHCCCE-EEEEEC----------------------CHHHHHHHHHHHHHhCC--c
Confidence            3467889999996 78999999999999986 777665                      23355556666666544  4


Q ss_pred             EeEeeCCCCCC--chh-------hcCCccEEEEcCC
Q 020565          106 VSVEKGDLSSL--DGE-------FYDKFDVVVVSCC  132 (324)
Q Consensus       106 v~~~~~~~~~~--~~~-------~~~~~diVi~~~~  132 (324)
                      +..+..++++.  ...       .+...|+||.+..
T Consensus        80 ~~~~~~D~~~~~~v~~~~~~~~~~~g~id~lv~~Ag  115 (262)
T 3rkr_A           80 AESHACDLSHSDAIAAFATGVLAAHGRCDVLVNNAG  115 (262)
T ss_dssp             EEEEECCTTCHHHHHHHHHHHHHHHSCCSEEEECCC
T ss_pred             eeEEEecCCCHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence            45555555431  111       2245777776643

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=94.12  E-value=0.12  Score=44.35  Aligned_cols=35  Identities=26%  Similarity=0.351  Sum_probs=30.2

Q ss_pred             HHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        28 ~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      .|++++|+|.|+ ||+|.++++.|+..|.. +.++|.
T Consensus        11 ~l~~k~vlITGas~gIG~~ia~~l~~~G~~-V~~~~r   46 (247)
T 3i1j_A           11 LLKGRVILVTGAARGIGAAAARAYAAHGAS-VVLLGR   46 (247)
T ss_dssp             TTTTCEEEESSTTSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             cCCCCEEEEeCCCChHHHHHHHHHHHCCCE-EEEEec
Confidence            477889999996 78999999999999985 777765

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=94.09  E-value=0.089  Score=46.50  Aligned_cols=35  Identities=20%  Similarity=0.255  Sum_probs=30.1

Q ss_pred             HHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        28 ~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      .|++++++|.|. ||+|.++++.|+..|.. +.++|.
T Consensus        29 ~l~gk~~lVTGas~GIG~aia~~la~~G~~-V~~~~r   64 (276)
T 3r1i_A           29 DLSGKRALITGASTGIGKKVALAYAEAGAQ-VAVAAR   64 (276)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEeC
Confidence            467889999996 78999999999999975 777765

>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}

Probab=94.08  E-value=0.16  Score=45.48  Aligned_cols=88  Identities=10%  Similarity=0.118  Sum_probs=51.0

Q ss_pred             HhcCcEEEEcCchhHHH-HHHHHHH-hCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeE
Q 020565           29 LSKSHILVCGMKGTVAE-FCKNIVL-AGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRV  106 (324)
Q Consensus        29 l~~~~VliiG~g~lGse-i~k~L~~-~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v  106 (324)
                      ++.-||.|||+|.+|.. .+.+|.. .|+.-+.++|.                      ...|++.+++...     +. 
T Consensus         4 M~~~~igiIG~G~~g~~~~~~~l~~~~~~~l~av~d~----------------------~~~~~~~~a~~~~-----~~-   55 (308)
T 3uuw_A            4 MKNIKMGMIGLGSIAQKAYLPILTKSERFEFVGAFTP----------------------NKVKREKICSDYR-----IM-   55 (308)
T ss_dssp             -CCCEEEEECCSHHHHHHTHHHHTSCSSSEEEEEECS----------------------CHHHHHHHHHHHT-----CC-
T ss_pred             cccCcEEEEecCHHHHHHHHHHHHhCCCeEEEEEECC----------------------CHHHHHHHHHHcC-----CC-
Confidence            45678999999999996 8888876 34443335555                      3335554444331     11 


Q ss_pred             eEeeCCCCCCchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccE
Q 020565          107 SVEKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAF  153 (324)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~  153 (324)
                       .     ....++.+++.|+|+.|+-+..-...+ ..|.+  .++++
T Consensus        56 -~-----~~~~~~ll~~~D~V~i~tp~~~h~~~~-~~al~--~gk~v   93 (308)
T 3uuw_A           56 -P-----FDSIESLAKKCDCIFLHSSTETHYEII-KILLN--LGVHV   93 (308)
T ss_dssp             -B-----CSCHHHHHTTCSEEEECCCGGGHHHHH-HHHHH--TTCEE
T ss_pred             -C-----cCCHHHHHhcCCEEEEeCCcHhHHHHH-HHHHH--CCCcE
Confidence             0     122345566888888887665433333 34444  55543

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=94.07  E-value=0.017  Score=51.91  Aligned_cols=50  Identities=8%  Similarity=0.086  Sum_probs=37.9

Q ss_pred             hHHHHHh--hhHHHHHHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565           14 YDRQIRV--WGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (324)
Q Consensus        14 y~Rqi~l--~g~~~q~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d   64 (324)
                      |+++++-  |.......|..++|.|||+|.+|..+|+.|...|.. ++.+|..
T Consensus       103 ~~~~~~~g~w~~~~~~~l~g~tvGIIGlG~IG~~vA~~l~~~G~~-V~~~dr~  154 (290)
T 3gvx_A          103 NNELMKAGIFRQSPTTLLYGKALGILGYGGIGRRVAHLAKAFGMR-VIAYTRS  154 (290)
T ss_dssp             HHHHHHTTCCCCCCCCCCTTCEEEEECCSHHHHHHHHHHHHHTCE-EEEECSS
T ss_pred             hhhHhhhcccccCCceeeecchheeeccCchhHHHHHHHHhhCcE-EEEEecc
Confidence            4444443  432222458889999999999999999999999985 8888874

>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2

Probab=94.06  E-value=0.2  Score=44.97  Aligned_cols=105  Identities=15%  Similarity=0.122  Sum_probs=60.9

Q ss_pred             CcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEee
Q 020565           32 SHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEK  110 (324)
Q Consensus        32 ~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~  110 (324)
                      .+|+|.|+ |.+|+.+++.|+..|. +++++|...       |      .     +   .+...+.+.. .+  +++...
T Consensus         2 ~~vlVTGatG~iG~~l~~~L~~~g~-~V~~~~r~~-------~------~-----~---~~~~~~~l~~-~~--~~~~~~   56 (347)
T 1orr_A            2 AKLLITGGCGFLGSNLASFALSQGI-DLIVFDNLS-------R------K-----G---ATDNLHWLSS-LG--NFEFVH   56 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCC-------S------T-----T---HHHHHHHHHT-TC--CCEEEE
T ss_pred             cEEEEeCCCchhHHHHHHHHHhCCC-EEEEEeCCC-------c------c-----C---chhhhhhhcc-CC--ceEEEE
Confidence            37999995 8899999999999996 477766411       0      0     1   1111222322 12  344444


Q ss_pred             CCCCCC--chhhcCC--ccEEEEcCCCH---------H--------HHHHHHHHHHhccCCc--cEEEeeecCceE
Q 020565          111 GDLSSL--DGEFYDK--FDVVVVSCCSV---------T--------TKKLINEKCRKLSKRV--AFYTVDCRDSCG  163 (324)
Q Consensus       111 ~~~~~~--~~~~~~~--~diVi~~~~~~---------~--------~~~~l~~~~~~~~~~i--p~i~~~~~G~~g  163 (324)
                      .++.+.  ....+++  +|+||.+....         .        ....+-+.|++  .++  .+|++++.+.+|
T Consensus        57 ~Dl~d~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~--~~~~~~iv~~SS~~v~g  130 (347)
T 1orr_A           57 GDIRNKNDVTRLITKYMPDSCFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQ--YNSNCNIIYSSTNKVYG  130 (347)
T ss_dssp             CCTTCHHHHHHHHHHHCCSEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHH--HCTTCEEEEEEEGGGGT
T ss_pred             cCCCCHHHHHHHHhccCCCEEEECCcccChhhhhhCHHHHHHHHHHHHHHHHHHHHH--hCCCceEEEeccHHHhC
Confidence            555432  2344555  89998776421         1        11345567776  444  488888776665

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=94.03  E-value=0.36  Score=45.92  Aligned_cols=43  Identities=12%  Similarity=-0.059  Sum_probs=35.6

Q ss_pred             hcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCC
Q 020565           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSA   73 (324)
Q Consensus        30 ~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r   73 (324)
                      -+-|+.|||+|.+|..+|.+|+..|.. ++++|.+.-..+.+++
T Consensus         7 ~~~~~~vIGlG~vG~~~A~~La~~G~~-V~~~D~~~~kv~~l~~   49 (446)
T 4a7p_A            7 GSVRIAMIGTGYVGLVSGACFSDFGHE-VVCVDKDARKIELLHQ   49 (446)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCE-EEEECSCSTTHHHHTT
T ss_pred             CceEEEEEcCCHHHHHHHHHHHHCCCE-EEEEeCCHHHHHHHhc
Confidence            356899999999999999999999975 8999887655555544

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=94.02  E-value=0.1  Score=46.63  Aligned_cols=31  Identities=19%  Similarity=0.334  Sum_probs=26.8

Q ss_pred             cEEEEcCchhHHHHHHHHHHh-----CCCcEEEEcC
Q 020565           33 HILVCGMKGTVAEFCKNIVLA-----GVGSLTLMDD   63 (324)
Q Consensus        33 ~VliiG~g~lGsei~k~L~~~-----Gv~~i~lvD~   63 (324)
                      +|.|||+|.+|+.++..|+.+     |..+++++|.
T Consensus        10 ~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r   45 (317)
T 2qyt_A           10 KIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIAR   45 (317)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECC
T ss_pred             EEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEc
Confidence            799999999999999999999     8225888765

>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus}

Probab=93.99  E-value=0.19  Score=43.23  Aligned_cols=32  Identities=13%  Similarity=0.098  Sum_probs=27.6

Q ss_pred             cEEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565           33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (324)
Q Consensus        33 ~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d   64 (324)
                      ||.|||+|.+|..++++|...|+.-..++|.+
T Consensus         2 ~vgiIG~G~mG~~~~~~l~~~g~~lv~v~d~~   33 (236)
T 2dc1_A            2 LVGLIGYGAIGKFLAEWLERNGFEIAAILDVR   33 (236)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEECSS
T ss_pred             EEEEECCCHHHHHHHHHHhcCCCEEEEEEecC
Confidence            69999999999999999998887644688875

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=93.98  E-value=0.048  Score=50.88  Aligned_cols=38  Identities=21%  Similarity=0.285  Sum_probs=36.0

Q ss_pred             HHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCc
Q 020565           28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV   65 (324)
Q Consensus        28 ~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~   65 (324)
                      ++.+.||+|+|+|..|..+++.|..+|+++|+++|..-
T Consensus       185 ~l~d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~G  222 (398)
T 2a9f_A          185 SLDEVSIVVNGGGSAGLSITRKLLAAGATKVTVVDKFG  222 (398)
T ss_dssp             CTTSCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTE
T ss_pred             CCCccEEEEECCCHHHHHHHHHHHHcCCCeEEEEECCC
Confidence            68899999999999999999999999999999999974

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}

Probab=93.97  E-value=0.23  Score=44.58  Aligned_cols=99  Identities=14%  Similarity=0.047  Sum_probs=58.9

Q ss_pred             CcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEee
Q 020565           32 SHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEK  110 (324)
Q Consensus        32 ~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~  110 (324)
                      .+|+|.|+ |.+|+.+++.|+..|. +++++|.+.-...++                          .+  +  .++...
T Consensus        14 M~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~l--------------------------~~--~--~~~~~~   62 (342)
T 2x4g_A           14 VKYAVLGATGLLGHHAARAIRAAGH-DLVLIHRPSSQIQRL--------------------------AY--L--EPECRV   62 (342)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECTTSCGGGG--------------------------GG--G--CCEEEE
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC-EEEEEecChHhhhhh--------------------------cc--C--CeEEEE
Confidence            37999995 8899999999999995 577776632111111                          00  1  233334


Q ss_pred             CCCCC--CchhhcCCccEEEEcCCCH---------------HHHHHHHHHHHhccCCc-cEEEeeecCceE
Q 020565          111 GDLSS--LDGEFYDKFDVVVVSCCSV---------------TTKKLINEKCRKLSKRV-AFYTVDCRDSCG  163 (324)
Q Consensus       111 ~~~~~--~~~~~~~~~diVi~~~~~~---------------~~~~~l~~~~~~~~~~i-p~i~~~~~G~~g  163 (324)
                      .++.+  .....++++|+||.+....               .....+-+.|++  .++ .+|+.++.+.+|
T Consensus        63 ~Dl~d~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~--~~~~~~v~~SS~~~~~  131 (342)
T 2x4g_A           63 AEMLDHAGLERALRGLDGVIFSAGYYPSRPRRWQEEVASALGQTNPFYAACLQ--ARVPRILYVGSAYAMP  131 (342)
T ss_dssp             CCTTCHHHHHHHTTTCSEEEEC------------CHHHHHHHHHHHHHHHHHH--HTCSCEEEECCGGGSC
T ss_pred             ecCCCHHHHHHHHcCCCEEEECCccCcCCCCCHHHHHHHHHHHHHHHHHHHHH--cCCCeEEEECCHHhhC
Confidence            44443  1244566788888765321               112355667776  453 688888777665

>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}

Probab=93.96  E-value=0.36  Score=42.98  Aligned_cols=100  Identities=7%  Similarity=0.069  Sum_probs=59.9

Q ss_pred             cCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEe
Q 020565           31 KSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVE  109 (324)
Q Consensus        31 ~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~  109 (324)
                      ..+|+|.|+ |.+|+.+++.|+..|. ++++++.+.-             +.-   ...+++.+. .+..  +.  ++..
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~R~~~-------------~~~---~~~~~~~l~-~~~~--~~--v~~v   61 (321)
T 3c1o_A            4 MEKIIIYGGTGYIGKFMVRASLSFSH-PTFIYARPLT-------------PDS---TPSSVQLRE-EFRS--MG--VTII   61 (321)
T ss_dssp             CCCEEEETTTSTTHHHHHHHHHHTTC-CEEEEECCCC-------------TTC---CHHHHHHHH-HHHH--TT--CEEE
T ss_pred             ccEEEEEcCCchhHHHHHHHHHhCCC-cEEEEECCcc-------------ccc---ChHHHHHHH-Hhhc--CC--cEEE
Confidence            357999996 8999999999999995 4777655210             000   011332221 1221  23  3444


Q ss_pred             eCCCCC--CchhhcCCccEEEEcCCCH--HHHHHHHHHHHhccCC-ccEE
Q 020565          110 KGDLSS--LDGEFYDKFDVVVVSCCSV--TTKKLINEKCRKLSKR-VAFY  154 (324)
Q Consensus       110 ~~~~~~--~~~~~~~~~diVi~~~~~~--~~~~~l~~~~~~~~~~-ip~i  154 (324)
                      ..++.+  .....++++|+||.+....  .....+-+.|++  .+ +..+
T Consensus        62 ~~D~~d~~~l~~a~~~~d~vi~~a~~~~~~~~~~l~~aa~~--~g~v~~~  109 (321)
T 3c1o_A           62 EGEMEEHEKMVSVLKQVDIVISALPFPMISSQIHIINAIKA--AGNIKRF  109 (321)
T ss_dssp             ECCTTCHHHHHHHHTTCSEEEECCCGGGSGGGHHHHHHHHH--HCCCCEE
T ss_pred             EecCCCHHHHHHHHcCCCEEEECCCccchhhHHHHHHHHHH--hCCccEE
Confidence            455554  2356678999999987642  334566677777  55 5444

>1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A*

Probab=93.93  E-value=0.39  Score=44.15  Aligned_cols=116  Identities=16%  Similarity=0.191  Sum_probs=64.5

Q ss_pred             CcEEEEcC-chhHHHHHHHHH-HhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCC---Ce-
Q 020565           32 SHILVCGM-KGTVAEFCKNIV-LAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPM---VR-  105 (324)
Q Consensus        32 ~~VliiG~-g~lGsei~k~L~-~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~---v~-  105 (324)
                      .+|+|.|+ |.+|+.+++.|+ ..|. +++++|...-...         ..+    .....+.+.+.++++...   -. 
T Consensus         3 m~vlVTGatG~iG~~l~~~L~~~~g~-~V~~~~r~~~~~~---------~~~----~~~~~~~~~~~~~~~~~~~~~~~~   68 (397)
T 1gy8_A            3 MRVLVCGGAGYIGSHFVRALLRDTNH-SVVIVDSLVGTHG---------KSD----HVETRENVARKLQQSDGPKPPWAD   68 (397)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHCCC-EEEEEECCTTTTT---------CCT----TSCCHHHHHHHHHHSCSSCCTTTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHHhCCC-EEEEEecCCcccc---------ccc----ccchHHHHHHHHHHhhccccccCC
Confidence            47999995 889999999999 9996 5777765321100         000    000022233334444221   12 


Q ss_pred             --EeEeeCCCCCC--chhhcC--C-ccEEEEcCCCH-----------------HHHHHHHHHHHhccCCc-cEEEeeecC
Q 020565          106 --VSVEKGDLSSL--DGEFYD--K-FDVVVVSCCSV-----------------TTKKLINEKCRKLSKRV-AFYTVDCRD  160 (324)
Q Consensus       106 --v~~~~~~~~~~--~~~~~~--~-~diVi~~~~~~-----------------~~~~~l~~~~~~~~~~i-p~i~~~~~G  160 (324)
                        ++.+..++.+.  ....++  + +|+||.+....                 .....+-+.|++  .++ .+|++++.+
T Consensus        69 ~~~~~~~~Dl~d~~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~--~~~~~iv~~SS~~  146 (397)
T 1gy8_A           69 RYAALEVGDVRNEDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLL--HKCDKIIFSSSAA  146 (397)
T ss_dssp             CCCEEEESCTTCHHHHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHH--TTCCEEEEEEEGG
T ss_pred             ceEEEEECCCCCHHHHHHHHHhcCCCCEEEECCCccCcCcchhhHHHHHHHHhHHHHHHHHHHHH--hCCCEEEEECCHH
Confidence              44555555542  233444  4 89999876421                 112345567777  554 578887776


Q ss_pred             ceE
Q 020565          161 SCG  163 (324)
Q Consensus       161 ~~g  163 (324)
                      .+|
T Consensus       147 v~g  149 (397)
T 1gy8_A          147 IFG  149 (397)
T ss_dssp             GTB
T ss_pred             HhC
Confidence            665

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=93.92  E-value=0.45  Score=45.74  Aligned_cols=33  Identities=18%  Similarity=0.089  Sum_probs=29.6

Q ss_pred             cCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d   64 (324)
                      -.+|.|||+|.+|+.+|.+|+.+|.. ++++|.+
T Consensus         5 ~~kVgVIGaG~MG~~IA~~la~aG~~-V~l~D~~   37 (483)
T 3mog_A            5 VQTVAVIGSGTMGAGIAEVAASHGHQ-VLLYDIS   37 (483)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCC-EEEECSC
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCe-EEEEECC
Confidence            46899999999999999999999984 8998873

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=93.91  E-value=0.099  Score=49.58  Aligned_cols=43  Identities=9%  Similarity=-0.089  Sum_probs=32.2

Q ss_pred             HHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCC
Q 020565           28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWS   72 (324)
Q Consensus        28 ~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~   72 (324)
                      ...-.+|.|||+|.+|..+|..|+. |. .++++|.+.-..+.++
T Consensus        33 ~~~~mkIaVIGlG~mG~~lA~~La~-G~-~V~~~D~~~~~v~~l~   75 (432)
T 3pid_A           33 GSEFMKITISGTGYVGLSNGVLIAQ-NH-EVVALDIVQAKVDMLN   75 (432)
T ss_dssp             --CCCEEEEECCSHHHHHHHHHHHT-TS-EEEEECSCHHHHHHHH
T ss_pred             ccCCCEEEEECcCHHHHHHHHHHHc-CC-eEEEEecCHHHhhHHh
Confidence            4445689999999999999999998 85 5899987654443333

>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}

Probab=93.89  E-value=0.26  Score=44.32  Aligned_cols=36  Identities=8%  Similarity=0.156  Sum_probs=28.1

Q ss_pred             HHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCC
Q 020565           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDR   64 (324)
Q Consensus        28 ~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d   64 (324)
                      .++..+|+|.|+ |.+|+.+++.|+..|. +++++|..
T Consensus        18 ~~~~~~vlVTGatG~iG~~l~~~L~~~g~-~V~~~~r~   54 (333)
T 2q1w_A           18 GSHMKKVFITGICGQIGSHIAELLLERGD-KVVGIDNF   54 (333)
T ss_dssp             ---CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECC
T ss_pred             cCCCCEEEEeCCccHHHHHHHHHHHHCCC-EEEEEECC
Confidence            456678999995 8899999999999995 57777654

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=93.89  E-value=0.24  Score=44.12  Aligned_cols=95  Identities=19%  Similarity=0.162  Sum_probs=57.9

Q ss_pred             cCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEe
Q 020565           31 KSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVE  109 (324)
Q Consensus        31 ~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~  109 (324)
                      .++|+|.|+ |.+|+.+++.|...|. ++++++.+.                    . .+++.+ +.+..  +.  ++..
T Consensus        11 ~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~l~R~~--------------------~-~~~~~~-~~l~~--~~--v~~v   63 (318)
T 2r6j_A           11 KSKILIFGGTGYIGNHMVKGSLKLGH-PTYVFTRPN--------------------S-SKTTLL-DEFQS--LG--AIIV   63 (318)
T ss_dssp             CCCEEEETTTSTTHHHHHHHHHHTTC-CEEEEECTT--------------------C-SCHHHH-HHHHH--TT--CEEE
T ss_pred             CCeEEEECCCchHHHHHHHHHHHCCC-cEEEEECCC--------------------C-chhhHH-HHhhc--CC--CEEE
Confidence            358999996 8899999999999995 466655421                    0 011111 11221  22  3344


Q ss_pred             eCCCCC--CchhhcCCccEEEEcCCCH--HHHHHHHHHHHhccCC-ccEE
Q 020565          110 KGDLSS--LDGEFYDKFDVVVVSCCSV--TTKKLINEKCRKLSKR-VAFY  154 (324)
Q Consensus       110 ~~~~~~--~~~~~~~~~diVi~~~~~~--~~~~~l~~~~~~~~~~-ip~i  154 (324)
                      ..++.+  .....++++|+||.+....  .....+-+.|++  .+ +..+
T Consensus        64 ~~Dl~d~~~l~~a~~~~d~vi~~a~~~~~~~~~~l~~aa~~--~g~v~~~  111 (318)
T 2r6j_A           64 KGELDEHEKLVELMKKVDVVISALAFPQILDQFKILEAIKV--AGNIKRF  111 (318)
T ss_dssp             ECCTTCHHHHHHHHTTCSEEEECCCGGGSTTHHHHHHHHHH--HCCCCEE
T ss_pred             EecCCCHHHHHHHHcCCCEEEECCchhhhHHHHHHHHHHHh--cCCCCEE
Confidence            455554  2345678899999887642  334566677877  55 5444

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=93.88  E-value=0.12  Score=48.27  Aligned_cols=33  Identities=12%  Similarity=0.118  Sum_probs=29.4

Q ss_pred             cCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      ..+|+|+|+|++|..++..+...|..+++.+|.
T Consensus       214 g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~  246 (404)
T 3ip1_A          214 GDNVVILGGGPIGLAAVAILKHAGASKVILSEP  246 (404)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECC
Confidence            467999999999999999999999988888775

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=93.86  E-value=0.1  Score=45.56  Aligned_cols=35  Identities=14%  Similarity=0.278  Sum_probs=29.9

Q ss_pred             HHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        28 ~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      .|++++++|.|. ||+|.++++.|+..|.. +.++|.
T Consensus         8 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~-V~~~~r   43 (264)
T 3ucx_A            8 LLTDKVVVISGVGPALGTTLARRCAEQGAD-LVLAAR   43 (264)
T ss_dssp             TTTTCEEEEESCCTTHHHHHHHHHHHTTCE-EEEEES
T ss_pred             CcCCcEEEEECCCcHHHHHHHHHHHHCcCE-EEEEeC
Confidence            467889999996 68999999999999985 777665

>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A*

Probab=93.85  E-value=0.21  Score=45.27  Aligned_cols=74  Identities=18%  Similarity=0.154  Sum_probs=49.1

Q ss_pred             cEEEEc-CchhHHHHHHHHHHh-CC-CcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEe
Q 020565           33 HILVCG-MKGTVAEFCKNIVLA-GV-GSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVE  109 (324)
Q Consensus        33 ~VliiG-~g~lGsei~k~L~~~-Gv-~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~  109 (324)
                      ||.|+| +|.+|..++..|... +. .++.|+|-+.                       |++..+-.|+.....+++..+
T Consensus         2 KV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~-----------------------~~~G~a~Dl~~~~~~~~v~~~   58 (312)
T 3hhp_A            2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP-----------------------VTPGVAVDLSHIPTAVKIKGF   58 (312)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSST-----------------------THHHHHHHHHTSCSSEEEEEE
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCC-----------------------CchhHHHHhhCCCCCceEEEe
Confidence            799999 899999999999886 54 5789988732                       122223334444333455443


Q ss_pred             eCCCCCCchhhcCCccEEEEcCC
Q 020565          110 KGDLSSLDGEFYDKFDVVVVSCC  132 (324)
Q Consensus       110 ~~~~~~~~~~~~~~~diVi~~~~  132 (324)
                      ..   ....+.++++|+||.+..
T Consensus        59 ~~---~~~~~~~~~aDivii~ag   78 (312)
T 3hhp_A           59 SG---EDATPALEGADVVLISAG   78 (312)
T ss_dssp             CS---SCCHHHHTTCSEEEECCS
T ss_pred             cC---CCcHHHhCCCCEEEEeCC
Confidence            21   223566889999998864

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=93.84  E-value=0.07  Score=46.45  Aligned_cols=34  Identities=18%  Similarity=0.131  Sum_probs=29.4

Q ss_pred             HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      +++++++|.|+ ||+|.++++.|+..|.. +.++|.
T Consensus         5 ~~~k~vlVTGas~GIG~aia~~l~~~G~~-V~~~~r   39 (252)
T 3h7a_A            5 PRNATVAVIGAGDYIGAEIAKKFAAEGFT-VFAGRR   39 (252)
T ss_dssp             CCSCEEEEECCSSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEeC
Confidence            56788999996 68999999999999985 888765

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=93.83  E-value=0.06  Score=46.41  Aligned_cols=34  Identities=21%  Similarity=0.260  Sum_probs=28.7

Q ss_pred             HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      |++++++|.|. ||+|.++++.|+..|.. +.++|.
T Consensus         3 l~~k~vlITGas~gIG~~~a~~l~~~G~~-v~~~~r   37 (247)
T 3lyl_A            3 LNEKVALVTGASRGIGFEVAHALASKGAT-VVGTAT   37 (247)
T ss_dssp             TTTCEEEESSCSSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCE-EEEEeC
Confidence            56788999996 78999999999999975 777665

>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis}

Probab=93.83  E-value=0.073  Score=48.30  Aligned_cols=72  Identities=14%  Similarity=0.106  Sum_probs=50.7

Q ss_pred             cCcEEEEcCchhHHHHHHHHHHh-CCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEe
Q 020565           31 KSHILVCGMKGTVAEFCKNIVLA-GVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVE  109 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~~~-Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~  109 (324)
                      ..+++|||+|..|...++.|... ++.+++++|.+                        |++.+++++++.. .+.+...
T Consensus       121 ~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~------------------------~a~~la~~l~~~~-g~~~~~~  175 (313)
T 3hdj_A          121 SSVLGLFGAGTQGAEHAAQLSARFALEAILVHDPY------------------------ASPEILERIGRRC-GVPARMA  175 (313)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECTT------------------------CCHHHHHHHHHHH-TSCEEEC
T ss_pred             CcEEEEECccHHHHHHHHHHHHhCCCcEEEEECCc------------------------HHHHHHHHHHHhc-CCeEEEe
Confidence            56899999999999999999874 78899998773                        3334445554322 2333332


Q ss_pred             eCCCCCCchhhcCCccEEEEcCCC
Q 020565          110 KGDLSSLDGEFYDKFDVVVVSCCS  133 (324)
Q Consensus       110 ~~~~~~~~~~~~~~~diVi~~~~~  133 (324)
                            ...+.++++|+||.|+-+
T Consensus       176 ------~~~eav~~aDIVi~aT~s  193 (313)
T 3hdj_A          176 ------APADIAAQADIVVTATRS  193 (313)
T ss_dssp             ------CHHHHHHHCSEEEECCCC
T ss_pred             ------CHHHHHhhCCEEEEccCC
Confidence                  135567789999999875

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=93.80  E-value=0.12  Score=45.04  Aligned_cols=80  Identities=19%  Similarity=0.288  Sum_probs=51.1

Q ss_pred             HHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeE
Q 020565           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRV  106 (324)
Q Consensus        28 ~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v  106 (324)
                      .|+.++++|.|. ||+|.++++.|+..|. ++.++|.                      ...+.+.+.+.+++..+ .++
T Consensus         7 ~l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r----------------------~~~~~~~~~~~l~~~~~-~~~   62 (262)
T 3pk0_A            7 DLQGRSVVVTGGTKGIGRGIATVFARAGA-NVAVAGR----------------------STADIDACVADLDQLGS-GKV   62 (262)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEES----------------------CHHHHHHHHHHHHTTSS-SCE
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeC----------------------CHHHHHHHHHHHHhhCC-CcE
Confidence            367789999995 7899999999999998 4777765                      33344555555655432 244


Q ss_pred             eEeeCCCCCC--chhh-------cCCccEEEEcC
Q 020565          107 SVEKGDLSSL--DGEF-------YDKFDVVVVSC  131 (324)
Q Consensus       107 ~~~~~~~~~~--~~~~-------~~~~diVi~~~  131 (324)
                      ..+..++.+.  ...+       +...|++|.+.
T Consensus        63 ~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lvnnA   96 (262)
T 3pk0_A           63 IGVQTDVSDRAQCDALAGRAVEEFGGIDVVCANA   96 (262)
T ss_dssp             EEEECCTTSHHHHHHHHHHHHHHHSCCSEEEECC
T ss_pred             EEEEcCCCCHHHHHHHHHHHHHHhCCCCEEEECC
Confidence            5555555431  1111       23677777654

>2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A*

Probab=93.79  E-value=0.05  Score=51.67  Aligned_cols=35  Identities=14%  Similarity=0.250  Sum_probs=32.9

Q ss_pred             HHhcCcEEEEcCchhHHHHHHHHHHhCC--CcEEEEc
Q 020565           28 RLSKSHILVCGMKGTVAEFCKNIVLAGV--GSLTLMD   62 (324)
Q Consensus        28 ~l~~~~VliiG~g~lGsei~k~L~~~Gv--~~i~lvD   62 (324)
                      .+++.+|+|+|+|+.|..+++.|...|+  ++|+++|
T Consensus       183 ~l~~~rvlvlGAGgAg~aia~~L~~~G~~~~~I~vvd  219 (439)
T 2dvm_A          183 KISEITLALFGAGAAGFATLRILTEAGVKPENVRVVE  219 (439)
T ss_dssp             CTTTCCEEEECCSHHHHHHHHHHHHTTCCGGGEEEEE
T ss_pred             CccCCEEEEECccHHHHHHHHHHHHcCCCcCeEEEEE
Confidence            4678899999999999999999999999  8999998

>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*

Probab=93.77  E-value=0.091  Score=45.70  Aligned_cols=35  Identities=14%  Similarity=0.229  Sum_probs=29.6

Q ss_pred             HHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        28 ~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      .|++++|+|.|. |++|.++++.|+..|. ++.++|.
T Consensus        11 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r   46 (260)
T 2zat_A           11 PLENKVALVTASTDGIGLAIARRLAQDGA-HVVVSSR   46 (260)
T ss_dssp             TTTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence            467788999996 7899999999999997 4777665

>4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A, GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A*

Probab=93.75  E-value=0.26  Score=41.86  Aligned_cols=87  Identities=13%  Similarity=0.136  Sum_probs=55.8

Q ss_pred             hcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEe
Q 020565           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVE  109 (324)
Q Consensus        30 ~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~  109 (324)
                      ..++++|+|+|+.|.+++..|...|..-+-++|++.-.. .+.             |                 +.+-..
T Consensus        11 ~~k~v~IiGAGg~g~~v~~~l~~~~~~~vgfiDd~~~~~-~~~-------------g-----------------~~Vlg~   59 (220)
T 4ea9_A           11 AIGGVVIIGGGGHAKVVIESLRACGETVAAIVDADPTRR-AVL-------------G-----------------VPVVGD   59 (220)
T ss_dssp             CSSCEEEECCSHHHHHHHHHHHHTTCCEEEEECSCC----CBT-------------T-----------------BCEEES
T ss_pred             CCCCEEEEcCCHHHHHHHHHHHhCCCEEEEEEeCCcccC-cCC-------------C-----------------eeEECC
Confidence            445899999999999999999998888788888863221 110             1                 111111


Q ss_pred             eCCCCCCchhhc-CCccEEEEcCCCHHHHHHHHHHHHhccCCccE
Q 020565          110 KGDLSSLDGEFY-DKFDVVVVSCCSVTTKKLINEKCRKLSKRVAF  153 (324)
Q Consensus       110 ~~~~~~~~~~~~-~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~  153 (324)
                      ..    ....+. ...+.++.+..+...+..+.+.+..  .+..+
T Consensus        60 ~~----~~~~~~~~~~~~v~iAIg~~~~R~~i~~~l~~--~g~~~   98 (220)
T 4ea9_A           60 DL----ALPMLREQGLSRLFVAIGDNRLRQKLGRKARD--HGFSL   98 (220)
T ss_dssp             GG----GHHHHHHTTCCEEEECCCCHHHHHHHHHHHHH--TTCEE
T ss_pred             HH----HHHHhhcccccEEEEecCCHHHHHHHHHHHHh--cCCCc
Confidence            11    111112 1245567788888899999999988  65443

>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}

Probab=93.75  E-value=0.19  Score=44.96  Aligned_cols=104  Identities=11%  Similarity=0.040  Sum_probs=55.4

Q ss_pred             HHHHHHhc-CcEEEEc-CchhHHHHHHHHHHh-CCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhh
Q 020565           24 DAQRRLSK-SHILVCG-MKGTVAEFCKNIVLA-GVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDF  100 (324)
Q Consensus        24 ~~q~~l~~-~~VliiG-~g~lGsei~k~L~~~-Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~l  100 (324)
                      ++|..+.. -||.|+| +|.+|..+++.+... ++.=+-++|...-   +.      .-.|+   |.         +..+
T Consensus        13 ~~~~~m~~~irV~V~Ga~GrMGr~i~~~v~~~~~~eLvg~vd~~~~---~~------~G~d~---ge---------l~G~   71 (288)
T 3ijp_A           13 EAQTQGPGSMRLTVVGANGRMGRELITAIQRRKDVELCAVLVRKGS---SF------VDKDA---SI---------LIGS   71 (288)
T ss_dssp             --------CEEEEESSTTSHHHHHHHHHHHTCSSEEEEEEBCCTTC---TT------TTSBG---GG---------GTTC
T ss_pred             hhhhhccCCeEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCc---cc------cccch---HH---------hhcc
Confidence            45544443 4899999 899999999998754 3332233454211   00      01122   21         0001


Q ss_pred             CCCCeEeEeeCCCCCCchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEee
Q 020565          101 NPMVRVSVEKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVD  157 (324)
Q Consensus       101 np~v~v~~~~~~~~~~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~~  157 (324)
                      .+ ..+     .+....++.+.++|+||+.+. ++.....-+.|.+  +++|++.+.
T Consensus        72 ~~-~gv-----~v~~dl~~ll~~aDVvIDFT~-p~a~~~~~~~~l~--~Gv~vViGT  119 (288)
T 3ijp_A           72 DF-LGV-----RITDDPESAFSNTEGILDFSQ-PQASVLYANYAAQ--KSLIHIIGT  119 (288)
T ss_dssp             SC-CSC-----BCBSCHHHHTTSCSEEEECSC-HHHHHHHHHHHHH--HTCEEEECC
T ss_pred             Cc-CCc-----eeeCCHHHHhcCCCEEEEcCC-HHHHHHHHHHHHH--cCCCEEEEC
Confidence            11 111     122334566778999999984 4555566678888  899988543

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=93.72  E-value=0.19  Score=44.20  Aligned_cols=81  Identities=15%  Similarity=0.208  Sum_probs=52.2

Q ss_pred             HHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCC-Ce
Q 020565           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPM-VR  105 (324)
Q Consensus        28 ~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~-v~  105 (324)
                      .|++++|+|.|. ||+|.++++.|+..|.. +.++|.                      ...+.+.+.+.+++..+. .+
T Consensus         8 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~-V~~~~r----------------------~~~~~~~~~~~l~~~~~~~~~   64 (281)
T 3svt_A            8 SFQDRTYLVTGGGSGIGKGVAAGLVAAGAS-VMIVGR----------------------NPDKLAGAVQELEALGANGGA   64 (281)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEES----------------------CHHHHHHHHHHHHTTCCSSCE
T ss_pred             CcCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeC----------------------CHHHHHHHHHHHHHhCCCCce
Confidence            467889999996 78999999999999985 777765                      233455556666655432 24


Q ss_pred             EeEeeCCCCCC--chh-------hcCCccEEEEcC
Q 020565          106 VSVEKGDLSSL--DGE-------FYDKFDVVVVSC  131 (324)
Q Consensus       106 v~~~~~~~~~~--~~~-------~~~~~diVi~~~  131 (324)
                      +.....++.+.  ...       .+...|++|.+.
T Consensus        65 ~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lv~nA   99 (281)
T 3svt_A           65 IRYEPTDITNEDETARAVDAVTAWHGRLHGVVHCA   99 (281)
T ss_dssp             EEEEECCTTSHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             EEEEeCCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            55555555431  111       123567777654

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=93.69  E-value=0.098  Score=46.05  Aligned_cols=50  Identities=14%  Similarity=0.131  Sum_probs=29.9

Q ss_pred             HhHHHHHh-hhHHHH-HHHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           13 LYDRQIRV-WGADAQ-RRLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        13 ry~Rqi~l-~g~~~q-~~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      .|.|+..- +|...+ ..|++++++|.|. ||+|.++++.|+..|.. +.++|.
T Consensus         8 ~~~~~~~~~~gp~~m~~~l~~k~~lVTGas~GIG~aia~~la~~G~~-V~~~~r   60 (270)
T 3ftp_A            8 HMGTLEAQTQGPGSMDKTLDKQVAIVTGASRGIGRAIALELARRGAM-VIGTAT   60 (270)
T ss_dssp             ---------------CCTTTTCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             ccccccCCCCCCcccccCCCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEeC
Confidence            34444444 555444 3477888999996 78999999999999984 777665

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=93.68  E-value=0.067  Score=48.98  Aligned_cols=33  Identities=12%  Similarity=0.090  Sum_probs=29.8

Q ss_pred             cCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      ..+|+|+|+|++|..++..+...|.++++.+|.
T Consensus       167 g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~  199 (352)
T 3fpc_A          167 GDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGS  199 (352)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHTTTCSSEEEECC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCcEEEEECC
Confidence            568999999999999999999999988888876

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=93.67  E-value=0.13  Score=49.48  Aligned_cols=40  Identities=18%  Similarity=0.263  Sum_probs=31.8

Q ss_pred             CcEEEEcCchhHHHHHHHHHHhCCC-cEEEEcCCccccccC
Q 020565           32 SHILVCGMKGTVAEFCKNIVLAGVG-SLTLMDDRVVTEEAW   71 (324)
Q Consensus        32 ~~VliiG~g~lGsei~k~L~~~Gv~-~i~lvD~d~v~~~nl   71 (324)
                      .+|.|||+|.+|..++.+|+..|.| +++++|.+.-..+.+
T Consensus        10 mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~~~v~~l   50 (481)
T 2o3j_A           10 SKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNTAKIAEW   50 (481)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHH
Confidence            4899999999999999999999644 588998754333333

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=93.67  E-value=0.075  Score=46.73  Aligned_cols=34  Identities=21%  Similarity=0.316  Sum_probs=28.6

Q ss_pred             HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      |++++++|.|+ ||+|.++++.|+..|.. +.++|.
T Consensus         2 l~~k~~lVTGas~GIG~aia~~la~~G~~-V~~~~r   36 (264)
T 3tfo_A            2 VMDKVILITGASGGIGEGIARELGVAGAK-ILLGAR   36 (264)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             CCCCEEEEeCCccHHHHHHHHHHHHCCCE-EEEEEC
Confidence            45678999996 78999999999999976 777665

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0

Probab=93.65  E-value=0.17  Score=44.53  Aligned_cols=94  Identities=14%  Similarity=0.148  Sum_probs=57.3

Q ss_pred             HHHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCe
Q 020565           27 RRLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVR  105 (324)
Q Consensus        27 ~~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~  105 (324)
                      ..|+.++++|.|. ||+|.++++.|+..|.. +.++|...-....+..    ...     ...+.+.+.+.+.+..+  +
T Consensus        11 ~~l~gk~~lVTGas~gIG~a~a~~la~~G~~-V~~~~r~~~~~~~~~~----~~~-----~~~~~~~~~~~~~~~~~--~   78 (280)
T 3pgx_A           11 GSLQGRVAFITGAARGQGRSHAVRLAAEGAD-IIACDICAPVSASVTY----APA-----SPEDLDETARLVEDQGR--K   78 (280)
T ss_dssp             CTTTTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEECCSCCCTTCCS----CCC-----CHHHHHHHHHHHHTTTC--C
T ss_pred             cccCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeccccccccccc----ccc-----CHHHHHHHHHHHHhcCC--e
Confidence            3578899999996 68999999999999985 7787764321111111    011     33456666666666554  3


Q ss_pred             EeEeeCCCCCC--chh-------hcCCccEEEEcCC
Q 020565          106 VSVEKGDLSSL--DGE-------FYDKFDVVVVSCC  132 (324)
Q Consensus       106 v~~~~~~~~~~--~~~-------~~~~~diVi~~~~  132 (324)
                      +..+..++.+.  ...       .+...|++|.+..
T Consensus        79 ~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lvnnAg  114 (280)
T 3pgx_A           79 ALTRVLDVRDDAALRELVADGMEQFGRLDVVVANAG  114 (280)
T ss_dssp             EEEEECCTTCHHHHHHHHHHHHHHHCCCCEEEECCC
T ss_pred             EEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            44455555431  112       2346788887643

>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A*

Probab=93.63  E-value=0.082  Score=45.57  Aligned_cols=34  Identities=21%  Similarity=0.293  Sum_probs=28.9

Q ss_pred             HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      +++++|+|.|. |++|.++++.|+..|.. +.++|.
T Consensus         5 l~~k~vlVTGasggiG~~~a~~l~~~G~~-V~~~~r   39 (258)
T 3afn_B            5 LKGKRVLITGSSQGIGLATARLFARAGAK-VGLHGR   39 (258)
T ss_dssp             GTTCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCCE-EEEECC
Confidence            56788999986 78999999999999975 777665

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=93.62  E-value=0.35  Score=43.49  Aligned_cols=34  Identities=24%  Similarity=0.201  Sum_probs=29.7

Q ss_pred             cCcEEEEcCchhHHHHHHHHHHhCC-CcEEEEcCC
Q 020565           31 KSHILVCGMKGTVAEFCKNIVLAGV-GSLTLMDDR   64 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~~~Gv-~~i~lvD~d   64 (324)
                      ..+|.|||+|.+|+.++..|+..|. .+++|+|-+
T Consensus        14 ~~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~   48 (303)
T 2i6t_A           14 VNKITVVGGGELGIACTLAISAKGIADRLVLLDLS   48 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCC
Confidence            3689999999999999999999996 359999873

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=93.62  E-value=0.16  Score=46.53  Aligned_cols=32  Identities=9%  Similarity=0.081  Sum_probs=28.2

Q ss_pred             cCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      ..+|.|||+|.+|..+++.|...|. +++++|.
T Consensus         8 ~~kIgIIG~G~mG~slA~~L~~~G~-~V~~~dr   39 (341)
T 3ktd_A            8 SRPVCILGLGLIGGSLLRDLHAANH-SVFGYNR   39 (341)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHTTC-CEEEECS
T ss_pred             CCEEEEEeecHHHHHHHHHHHHCCC-EEEEEeC
Confidence            3579999999999999999999995 4888776

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=93.52  E-value=0.071  Score=47.02  Aligned_cols=35  Identities=20%  Similarity=0.350  Sum_probs=29.3

Q ss_pred             HHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        28 ~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      .|+.++++|.|. ||+|.++++.|+..|.. +.++|.
T Consensus        23 ~l~gk~~lVTGas~gIG~aia~~la~~G~~-V~~~~r   58 (271)
T 4ibo_A           23 DLGGRTALVTGSSRGLGRAMAEGLAVAGAR-ILINGT   58 (271)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTCE-EEECCS
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeC
Confidence            367889999996 78999999999999974 777654

>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*

Probab=93.51  E-value=0.14  Score=44.48  Aligned_cols=34  Identities=15%  Similarity=0.284  Sum_probs=28.7

Q ss_pred             HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      |++++|+|.|. |++|.++++.|+..|. ++.++|.
T Consensus         5 l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r   39 (263)
T 3ai3_A            5 ISGKVAVITGSSSGIGLAIAEGFAKEGA-HIVLVAR   39 (263)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcC
Confidence            46678999996 7899999999999997 4777665

>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}

Probab=93.51  E-value=0.23  Score=45.21  Aligned_cols=32  Identities=16%  Similarity=0.135  Sum_probs=24.6

Q ss_pred             CcEEEEcCchhHHHHHHHHHHh-CCCcEEEEcC
Q 020565           32 SHILVCGMKGTVAEFCKNIVLA-GVGSLTLMDD   63 (324)
Q Consensus        32 ~~VliiG~g~lGsei~k~L~~~-Gv~~i~lvD~   63 (324)
                      -||.|||+|.+|...+++|... |+.-+.++|.
T Consensus         5 ~rvgiiG~G~~g~~~~~~l~~~~~~~l~av~d~   37 (344)
T 3euw_A            5 LRIALFGAGRIGHVHAANIAANPDLELVVIADP   37 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECS
T ss_pred             eEEEEECCcHHHHHHHHHHHhCCCcEEEEEECC
Confidence            4799999999999999999886 4432335554

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*

Probab=93.48  E-value=0.15  Score=44.04  Aligned_cols=34  Identities=15%  Similarity=0.288  Sum_probs=28.9

Q ss_pred             HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      |++++++|.|. ||+|.++++.|+..|.. +.++|.
T Consensus         5 l~~k~~lVTGas~gIG~aia~~l~~~G~~-V~~~~r   39 (247)
T 2jah_A            5 LQGKVALITGASSGIGEATARALAAEGAA-VAIAAR   39 (247)
T ss_dssp             TTTCEEEEESCSSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEEC
Confidence            56788999996 78999999999999975 777664

>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...

Probab=93.47  E-value=0.19  Score=44.38  Aligned_cols=35  Identities=20%  Similarity=0.332  Sum_probs=30.0

Q ss_pred             HHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        28 ~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      .+++++|+|.|+ ||+|.++++.|+..|.. +.++|.
T Consensus        25 ~~~~k~vlITGasggIG~~la~~l~~~G~~-V~~~~r   60 (286)
T 1xu9_A           25 MLQGKKVIVTGASKGIGREMAYHLAKMGAH-VVVTAR   60 (286)
T ss_dssp             GGTTCEEEESSCSSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             hcCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEEC
Confidence            467889999997 78999999999999974 777765

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=93.47  E-value=0.19  Score=44.38  Aligned_cols=36  Identities=11%  Similarity=0.263  Sum_probs=29.7

Q ss_pred             HHHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           27 RRLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        27 ~~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      ..+++++++|.|+ ||+|.++++.|+..|.. +.++|.
T Consensus        25 ~~~~~k~~lVTGas~GIG~aia~~la~~G~~-V~~~~~   61 (280)
T 4da9_A           25 TQKARPVAIVTGGRRGIGLGIARALAASGFD-IAITGI   61 (280)
T ss_dssp             SCCCCCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             hccCCCEEEEecCCCHHHHHHHHHHHHCCCe-EEEEeC
Confidence            3466788999996 78999999999999985 777663

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*

Probab=93.45  E-value=0.18  Score=44.42  Aligned_cols=96  Identities=15%  Similarity=0.190  Sum_probs=57.1

Q ss_pred             HHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeE
Q 020565           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRV  106 (324)
Q Consensus        28 ~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v  106 (324)
                      .|+.++++|.|+ +|+|.++++.|+..|.. +.++|.+.-........-+ ...     ...+.+.+++.+....+  ++
T Consensus         8 ~l~~k~~lVTGas~gIG~aia~~la~~G~~-V~~~~~~~~~~~~~~~~~~-~~~-----~~~~~~~~~~~~~~~~~--~~   78 (286)
T 3uve_A            8 RVEGKVAFVTGAARGQGRSHAVRLAQEGAD-IIAVDICKPIRAGVVDTAI-PAS-----TPEDLAETADLVKGHNR--RI   78 (286)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEECCSCSBTTBCCCSS-CCC-----CHHHHHHHHHHHHTTTC--CE
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCCe-EEEEecccccccccccccc-ccC-----CHHHHHHHHHHHhhcCC--ce
Confidence            467889999996 68999999999999976 8888764321111111000 000     23455556666665554  45


Q ss_pred             eEeeCCCCCC--chh-------hcCCccEEEEcCC
Q 020565          107 SVEKGDLSSL--DGE-------FYDKFDVVVVSCC  132 (324)
Q Consensus       107 ~~~~~~~~~~--~~~-------~~~~~diVi~~~~  132 (324)
                      ..+..++.+.  ...       .+...|++|.+..
T Consensus        79 ~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lv~nAg  113 (286)
T 3uve_A           79 VTAEVDVRDYDALKAAVDSGVEQLGRLDIIVANAG  113 (286)
T ss_dssp             EEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             EEEEcCCCCHHHHHHHHHHHHHHhCCCCEEEECCc
Confidence            5555555531  112       2346788887653

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=93.44  E-value=1.2  Score=39.89  Aligned_cols=122  Identities=16%  Similarity=0.163  Sum_probs=66.1

Q ss_pred             hHHHHHhhhHHHH--HHHhcCcEEEEcCchhHHHHHHHHHH-hCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHH
Q 020565           14 YDRQIRVWGADAQ--RRLSKSHILVCGMKGTVAEFCKNIVL-AGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIA   90 (324)
Q Consensus        14 y~Rqi~l~g~~~q--~~l~~~~VliiG~g~lGsei~k~L~~-~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka   90 (324)
                      |++.+.+...+.+  +--...+||.||||+.|.. +..|++ .| .+++-+|.                      .....
T Consensus       104 ~~~~~~l~~~E~~la~l~~g~rVLDIGcG~G~~t-a~~lA~~~g-a~V~gIDi----------------------s~~~l  159 (298)
T 3fpf_A          104 YPRYLELLKNEAALGRFRRGERAVFIGGGPLPLT-GILLSHVYG-MRVNVVEI----------------------EPDIA  159 (298)
T ss_dssp             HHHHHHHHHHHHHHTTCCTTCEEEEECCCSSCHH-HHHHHHTTC-CEEEEEES----------------------SHHHH
T ss_pred             cccHHHHHHHHHHHcCCCCcCEEEEECCCccHHH-HHHHHHccC-CEEEEEEC----------------------CHHHH
Confidence            4554455444432  1114678999999964322 222344 45 45777776                      44456


Q ss_pred             HHHHHHHHhhCCCCeEeEeeCCCCCCchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEeeecCceE
Q 020565           91 EVCCDSLKDFNPMVRVSVEKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCG  163 (324)
Q Consensus        91 ~~~~~~l~~lnp~v~v~~~~~~~~~~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~~~~G~~g  163 (324)
                      +.+++++++..- -+++....+..+..   -..||+|+.+..-......+.++.+.+..+=-++.....|...
T Consensus       160 ~~Ar~~~~~~gl-~~v~~v~gDa~~l~---d~~FDvV~~~a~~~d~~~~l~el~r~LkPGG~Lvv~~~~~~r~  228 (298)
T 3fpf_A          160 ELSRKVIEGLGV-DGVNVITGDETVID---GLEFDVLMVAALAEPKRRVFRNIHRYVDTETRIIYRTYTGMRA  228 (298)
T ss_dssp             HHHHHHHHHHTC-CSEEEEESCGGGGG---GCCCSEEEECTTCSCHHHHHHHHHHHCCTTCEEEEEECCGGGG
T ss_pred             HHHHHHHHhcCC-CCeEEEECchhhCC---CCCcCEEEECCCccCHHHHHHHHHHHcCCCcEEEEEcCcchhh
Confidence            667777776553 35666655544332   2689999977654333445555555543333344333334333

>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}

Probab=93.43  E-value=0.73  Score=44.38  Aligned_cols=33  Identities=6%  Similarity=0.063  Sum_probs=27.5

Q ss_pred             cCcEEEEc-CchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565           31 KSHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDDR   64 (324)
Q Consensus        31 ~~~VliiG-~g~lGsei~k~L~~~Gv~~i~lvD~d   64 (324)
                      ..+|+|.| .|.+|+.+++.|...|. +++.++..
T Consensus       147 ~m~VLVTGatG~IG~~l~~~L~~~G~-~V~~l~R~  180 (516)
T 3oh8_A          147 PLTVAITGSRGLVGRALTAQLQTGGH-EVIQLVRK  180 (516)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence            35899999 58899999999999997 47777653

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=93.43  E-value=0.15  Score=44.98  Aligned_cols=34  Identities=18%  Similarity=0.233  Sum_probs=29.0

Q ss_pred             HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      +++++|+|.|+ |++|.++++.|+..|.. +.++|.
T Consensus        20 l~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r   54 (277)
T 2rhc_B           20 QDSEVALVTGATSGIGLEIARRLGKEGLR-VFVCAR   54 (277)
T ss_dssp             TTSCEEEEETCSSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEeC
Confidence            67788999996 78999999999999975 777665

>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium}

Probab=93.43  E-value=0.064  Score=48.50  Aligned_cols=93  Identities=13%  Similarity=0.203  Sum_probs=59.5

Q ss_pred             HHHHHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCC
Q 020565           25 AQRRLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPM  103 (324)
Q Consensus        25 ~q~~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~  103 (324)
                      .+..|++++|+|.|+ ||+|.++++.|+..|. ++.++|.+.-.    .+.     ..-   ...+.+.+.+.+.+..+ 
T Consensus        21 ~m~~l~gk~vlVTGas~GIG~aia~~la~~G~-~Vv~~~r~~~~----~~~-----~~~---~~~~~~~~~~~~~~~~~-   86 (322)
T 3qlj_A           21 SMGVVDGRVVIVTGAGGGIGRAHALAFAAEGA-RVVVNDIGVGL----DGS-----PAS---GGSAAQSVVDEITAAGG-   86 (322)
T ss_dssp             -CCTTTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECCCBCT----TSS-----BTC---TTSHHHHHHHHHHHTTC-
T ss_pred             hhcccCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCcccc----ccc-----ccc---cHHHHHHHHHHHHhcCC-
Confidence            345678889999996 7899999999999997 48888764211    111     111   45577777777777654 


Q ss_pred             CeEeEeeCCCCCC--chhh-------cCCccEEEEcCC
Q 020565          104 VRVSVEKGDLSSL--DGEF-------YDKFDVVVVSCC  132 (324)
Q Consensus       104 v~v~~~~~~~~~~--~~~~-------~~~~diVi~~~~  132 (324)
                       ++.....++.+.  ...+       +...|++|.+..
T Consensus        87 -~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lv~nAg  123 (322)
T 3qlj_A           87 -EAVADGSNVADWDQAAGLIQTAVETFGGLDVLVNNAG  123 (322)
T ss_dssp             -EEEEECCCTTSHHHHHHHHHHHHHHHSCCCEEECCCC
T ss_pred             -cEEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence             455555555542  1122       236788886653

>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2

Probab=93.41  E-value=0.4  Score=45.97  Aligned_cols=77  Identities=13%  Similarity=0.138  Sum_probs=50.3

Q ss_pred             hcCcEEEEcCchh-HHHHHHHHHHh--CC--CcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHH----HHHHhh
Q 020565           30 SKSHILVCGMKGT-VAEFCKNIVLA--GV--GSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCC----DSLKDF  100 (324)
Q Consensus        30 ~~~~VliiG~g~l-Gsei~k~L~~~--Gv--~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~----~~l~~l  100 (324)
                      ++.+|.|||+|++ |..++..|+..  +.  .+++|+|-+.                      .|++...    ..+...
T Consensus        27 ~~~KIaVIGaGsv~~~ala~~L~~~~~~l~~~eV~L~Di~~----------------------e~~~~~~~~~~~~l~~~   84 (472)
T 1u8x_X           27 KSFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDK----------------------ERQDRIAGACDVFIREK   84 (472)
T ss_dssp             CCEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCH----------------------HHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhCCCCCCCCEEEEEeCCH----------------------HHHHHHHHHHHHHhccC
Confidence            3568999999998 66688888887  65  5699998732                      2333222    222344


Q ss_pred             CCCCeEeEeeCCCCCCchhhcCCccEEEEcCCC
Q 020565          101 NPMVRVSVEKGDLSSLDGEFYDKFDVVVVSCCS  133 (324)
Q Consensus       101 np~v~v~~~~~~~~~~~~~~~~~~diVi~~~~~  133 (324)
                      ....++....     ...+.++++|+||.+...
T Consensus        85 ~~~~~I~~t~-----D~~eal~~AD~VViaag~  112 (472)
T 1u8x_X           85 APDIEFAATT-----DPEEAFTDVDFVMAHIRV  112 (472)
T ss_dssp             CTTSEEEEES-----CHHHHHSSCSEEEECCCT
T ss_pred             CCCCEEEEEC-----CHHHHHcCCCEEEEcCCC
Confidence            4455665531     123567899999999865

>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2

Probab=93.41  E-value=0.18  Score=44.83  Aligned_cols=35  Identities=17%  Similarity=0.243  Sum_probs=29.9

Q ss_pred             HHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        28 ~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      .|+.++|+|.|+ |++|.++++.|+..|.. ++++|.
T Consensus        15 ~l~~k~vlVTGasggIG~~la~~l~~~G~~-V~~~~r   50 (303)
T 1yxm_A           15 LLQGQVAIVTGGATGIGKAIVKELLELGSN-VVIASR   50 (303)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeC
Confidence            477889999996 78999999999999974 777665

>3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis}

Probab=93.37  E-value=0.12  Score=49.19  Aligned_cols=91  Identities=14%  Similarity=0.114  Sum_probs=53.2

Q ss_pred             hcCcEEEEcCchh--HHHHHHHHHHhC--CCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCe
Q 020565           30 SKSHILVCGMKGT--VAEFCKNIVLAG--VGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVR  105 (324)
Q Consensus        30 ~~~~VliiG~g~l--Gsei~k~L~~~G--v~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~  105 (324)
                      ++.+|.|||+|++  |..++..|+..-  .++++|+|-+.=..+                   +.+...+.+.+  ...+
T Consensus         4 ~~~KIaVIGaGs~g~g~~la~~l~~~~~~~geV~L~Di~~e~le-------------------~~~~~~~~l~~--~~~~   62 (450)
T 3fef_A            4 DQIKIAYIGGGSQGWARSLMSDLSIDERMSGTVALYDLDFEAAQ-------------------KNEVIGNHSGN--GRWR   62 (450)
T ss_dssp             CCEEEEEETTTCSSHHHHHHHHHHHCSSCCEEEEEECSSHHHHH-------------------HHHHHHTTSTT--SCEE
T ss_pred             CCCEEEEECCChhHhHHHHHHHHHhccccCCeEEEEeCCHHHHH-------------------HHHHHHHHHhc--cCCe
Confidence            4569999999997  689999888622  248999987321110                   11111112222  2233


Q ss_pred             EeEeeCCCCCCchhhcCCccEEEEcCC--CHHHHHHHHHHHHh
Q 020565          106 VSVEKGDLSSLDGEFYDKFDVVVVSCC--SVTTKKLINEKCRK  146 (324)
Q Consensus       106 v~~~~~~~~~~~~~~~~~~diVi~~~~--~~~~~~~l~~~~~~  146 (324)
                      ++..     ....+.++++|+||.+..  ..+.+..=-++.++
T Consensus        63 I~~T-----tD~~eAl~dADfVI~airvG~~~~~~~De~ip~k  100 (450)
T 3fef_A           63 YEAV-----STLKKALSAADIVIISILPGSLDDMEVDVHLPER  100 (450)
T ss_dssp             EEEE-----SSHHHHHTTCSEEEECCCSSCHHHHHHHHHGGGG
T ss_pred             EEEE-----CCHHHHhcCCCEEEeccccCCcccchhhhhhhhc
Confidence            4332     233567899999999984  45544433345556

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=93.37  E-value=0.074  Score=46.35  Aligned_cols=35  Identities=9%  Similarity=0.247  Sum_probs=29.9

Q ss_pred             HHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        28 ~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      .|++++++|.|. ||+|.++++.|+..|.. +.++|.
T Consensus         3 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~-V~~~~r   38 (257)
T 3imf_A            3 AMKEKVVIITGGSSGMGKGMATRFAKEGAR-VVITGR   38 (257)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEeC
Confidence            467889999996 78999999999999975 777765

>3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I*

Probab=93.37  E-value=0.098  Score=50.23  Aligned_cols=28  Identities=14%  Similarity=0.083  Sum_probs=26.4

Q ss_pred             HHHHhc-CcEEEEcCchhHHHHHHHHHHh
Q 020565           26 QRRLSK-SHILVCGMKGTVAEFCKNIVLA   53 (324)
Q Consensus        26 q~~l~~-~~VliiG~g~lGsei~k~L~~~   53 (324)
                      .+.|+. ++|.|||+|.+|..++++|..+
T Consensus        48 ~~~L~GiKkIgIIGlGsMG~AmA~nLr~s   76 (525)
T 3fr7_A           48 PEAFKGIKQIGVIGWGSQGPAQAQNLRDS   76 (525)
T ss_dssp             HHHTTTCSEEEEECCTTHHHHHHHHHHHH
T ss_pred             hHHhcCCCEEEEEeEhHHHHHHHHHHHhc
Confidence            577888 9999999999999999999999

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}

Probab=93.35  E-value=0.028  Score=51.35  Aligned_cols=52  Identities=15%  Similarity=0.219  Sum_probs=39.3

Q ss_pred             HhHHHHHh--hhHHHHHHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCc
Q 020565           13 LYDRQIRV--WGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV   65 (324)
Q Consensus        13 ry~Rqi~l--~g~~~q~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~   65 (324)
                      +|+++.+-  |.......|..++|.|||+|.+|..+|+.|...|.. ++.+|...
T Consensus       120 ~~~~~~~~g~W~~~~~~~l~g~tvGIIGlG~IG~~vA~~l~~~G~~-V~~~dr~~  173 (324)
T 3hg7_A          120 LYREQQKQRLWQSHPYQGLKGRTLLILGTGSIGQHIAHTGKHFGMK-VLGVSRSG  173 (324)
T ss_dssp             HHHHHHHTTCCCCCCCCCSTTCEEEEECCSHHHHHHHHHHHHTTCE-EEEECSSC
T ss_pred             HHHHHHhhCCCcCCCCcccccceEEEEEECHHHHHHHHHHHhCCCE-EEEEcCCh
Confidence            34554443  533223468899999999999999999999999985 88888754

>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A

Probab=93.34  E-value=0.13  Score=44.69  Aligned_cols=34  Identities=21%  Similarity=0.243  Sum_probs=28.5

Q ss_pred             HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      +++++|+|.|+ |++|.++++.|+..|. +++++|.
T Consensus        12 l~~k~vlITGasggiG~~la~~l~~~G~-~V~~~~r   46 (266)
T 1xq1_A           12 LKAKTVLVTGGTKGIGHAIVEEFAGFGA-VIHTCAR   46 (266)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeC
Confidence            56788999986 7899999999999997 4777655

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=93.32  E-value=0.14  Score=44.99  Aligned_cols=92  Identities=18%  Similarity=0.165  Sum_probs=56.4

Q ss_pred             HHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeE
Q 020565           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRV  106 (324)
Q Consensus        28 ~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v  106 (324)
                      .|+.++|+|.|. ||+|.++++.|+..|.. +.++|...-..    +.-.   ..-   ...+.+.+...+.+..+  ++
T Consensus         7 ~l~gk~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~~~~~~~----~~~~---~~~---~~~~~~~~~~~~~~~~~--~~   73 (287)
T 3pxx_A            7 RVQDKVVLVTGGARGQGRSHAVKLAEEGAD-IILFDICHDIE----TNEY---PLA---TSRDLEEAGLEVEKTGR--KA   73 (287)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEECCSCCT----TSCS---CCC---CHHHHHHHHHHHHHTTS--CE
T ss_pred             ccCCCEEEEeCCCChHHHHHHHHHHHCCCe-EEEEccccccc----cccc---chh---hhHHHHHHHHHHHhcCC--ce
Confidence            477889999996 68999999999999976 88877632111    1000   000   23455556666666554  44


Q ss_pred             eEeeCCCCCC--chhh-------cCCccEEEEcCC
Q 020565          107 SVEKGDLSSL--DGEF-------YDKFDVVVVSCC  132 (324)
Q Consensus       107 ~~~~~~~~~~--~~~~-------~~~~diVi~~~~  132 (324)
                      ..+..++.+.  ...+       +...|++|.+..
T Consensus        74 ~~~~~D~~~~~~v~~~~~~~~~~~g~id~lv~nAg  108 (287)
T 3pxx_A           74 YTAEVDVRDRAAVSRELANAVAEFGKLDVVVANAG  108 (287)
T ss_dssp             EEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             EEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            5555565542  1122       247888887643

>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2

Probab=93.30  E-value=0.13  Score=44.93  Aligned_cols=34  Identities=26%  Similarity=0.442  Sum_probs=28.3

Q ss_pred             HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      +++++|+|.|+ |++|.++++.|+..|.. +.++|.
T Consensus         5 ~~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r   39 (267)
T 2gdz_A            5 VNGKVALVTGAAQGIGRAFAEALLLKGAK-VALVDW   39 (267)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             cCCCEEEEECCCCcHHHHHHHHHHHCCCE-EEEEEC
Confidence            45678999996 78999999999999975 777664

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=93.30  E-value=0.15  Score=45.07  Aligned_cols=39  Identities=23%  Similarity=0.249  Sum_probs=32.1

Q ss_pred             HHHHHHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           24 DAQRRLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        24 ~~q~~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      .....|+.++++|.|. ||+|.++++.|+..|.. +.++|.
T Consensus        26 ~~~~~l~gk~~lVTGas~GIG~aia~~la~~G~~-V~~~~r   65 (275)
T 4imr_A           26 ETIFGLRGRTALVTGSSRGIGAAIAEGLAGAGAH-VILHGV   65 (275)
T ss_dssp             HHHHCCTTCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             cccCCCCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEcC
Confidence            3345578899999996 78999999999999985 777765

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=93.27  E-value=0.26  Score=46.13  Aligned_cols=31  Identities=19%  Similarity=0.103  Sum_probs=27.7

Q ss_pred             cEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCc
Q 020565           33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV   65 (324)
Q Consensus        33 ~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~   65 (324)
                      +|.|||+|.+|..++..|+. | .+++++|.+.
T Consensus         2 kI~VIG~G~vG~~~A~~La~-G-~~V~~~d~~~   32 (402)
T 1dlj_A            2 KIAVAGSGYVGLSLGVLLSL-Q-NEVTIVDILP   32 (402)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-T-SEEEEECSCH
T ss_pred             EEEEECCCHHHHHHHHHHhC-C-CEEEEEECCH
Confidence            69999999999999999999 8 4699998754

>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2

Probab=93.27  E-value=0.13  Score=49.53  Aligned_cols=90  Identities=12%  Similarity=0.085  Sum_probs=53.2

Q ss_pred             hcCcEEEEcCchh--HHHHHHHHHHh-C--CCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHH----hh
Q 020565           30 SKSHILVCGMKGT--VAEFCKNIVLA-G--VGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLK----DF  100 (324)
Q Consensus        30 ~~~~VliiG~g~l--Gsei~k~L~~~-G--v~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~----~l  100 (324)
                      +..+|.|||+|++  |+.++..|+.. +  ..+++|+|-+.                      .|++.+.....    ..
T Consensus         2 ~~~KIaVIGAGsVg~g~ala~~La~~~~l~~~eV~L~Di~~----------------------e~l~~~~~~~~~~l~~~   59 (480)
T 1obb_A            2 PSVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDE----------------------ERLDAILTIAKKYVEEV   59 (480)
T ss_dssp             CCCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCH----------------------HHHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHhcCcCCCCEEEEEeCCH----------------------HHHHHHHHHHHHHhccC
Confidence            3568999999996  57778888743 2  46799998732                      23333333222    23


Q ss_pred             CCCCeEeEeeCCCCCCchhhcCCccEEEEcCCCHHH--HHHHHHHHHh
Q 020565          101 NPMVRVSVEKGDLSSLDGEFYDKFDVVVVSCCSVTT--KKLINEKCRK  146 (324)
Q Consensus       101 np~v~v~~~~~~~~~~~~~~~~~~diVi~~~~~~~~--~~~l~~~~~~  146 (324)
                      ....++...     ....+.++++|+||.+......  +..-.++.++
T Consensus        60 ~~~~~I~~t-----tD~~eal~dAD~VIiaagv~~~~~~~~dE~ip~K  102 (480)
T 1obb_A           60 GADLKFEKT-----MNLDDVIIDADFVINTAMVGGHTYLEKVRQIGEK  102 (480)
T ss_dssp             TCCCEEEEE-----SCHHHHHTTCSEEEECCCTTHHHHHHHHHHHHHH
T ss_pred             CCCcEEEEE-----CCHHHHhCCCCEEEECCCcccccccccccccccc
Confidence            334455442     1123557899999999865332  2223344555

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=93.27  E-value=0.15  Score=44.70  Aligned_cols=35  Identities=31%  Similarity=0.475  Sum_probs=29.9

Q ss_pred             HHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        28 ~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      .|+.++|+|.|. ||+|.++++.|+..|.. +.++|.
T Consensus        17 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~-V~~~~r   52 (266)
T 4egf_A           17 RLDGKRALITGATKGIGADIARAFAAAGAR-LVLSGR   52 (266)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeC
Confidence            367789999996 78999999999999985 777765

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=93.23  E-value=0.19  Score=46.06  Aligned_cols=34  Identities=21%  Similarity=0.171  Sum_probs=30.1

Q ss_pred             hcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        30 ~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      ...+|+|+|+|++|..++..+...|...+..+|.
T Consensus       179 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~  212 (363)
T 3m6i_A          179 LGDPVLICGAGPIGLITMLCAKAAGACPLVITDI  212 (363)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEES
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECC
Confidence            3578999999999999999999999988888775

>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2

Probab=93.22  E-value=0.16  Score=44.22  Aligned_cols=35  Identities=17%  Similarity=0.231  Sum_probs=29.4

Q ss_pred             HHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        28 ~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      .|++++++|.|+ ||+|.++++.|+..|.. +.++|.
T Consensus         4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r   39 (262)
T 1zem_A            4 KFNGKVCLVTGAGGNIGLATALRLAEEGTA-IALLDM   39 (262)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             ccCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeC
Confidence            366788999996 78999999999999975 777664

>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0

Probab=93.21  E-value=0.11  Score=45.73  Aligned_cols=93  Identities=11%  Similarity=0.068  Sum_probs=55.8

Q ss_pred             HHHHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCC
Q 020565           26 QRRLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMV  104 (324)
Q Consensus        26 q~~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v  104 (324)
                      +..|++++++|.|+ ||+|.++++.|+..|.. +.++|.+.-...  .   .+  ...   ...+.+...+.+.+..+  
T Consensus         5 m~~l~~k~~lVTGas~gIG~a~a~~l~~~G~~-V~~~~r~~~~~~--~---~~--~~~---~~~~~~~~~~~~~~~~~--   71 (281)
T 3s55_A            5 MADFEGKTALITGGARGMGRSHAVALAEAGAD-IAICDRCENSDV--V---GY--PLA---TADDLAETVALVEKTGR--   71 (281)
T ss_dssp             -CTTTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEECCSCCTT--C---SS--CCC---CHHHHHHHHHHHHHTTC--
T ss_pred             ccccCCCEEEEeCCCchHHHHHHHHHHHCCCe-EEEEeCCccccc--c---cc--ccc---cHHHHHHHHHHHHhcCC--
Confidence            44678899999995 78999999999999986 888876421110  0   00  001   23345555556665544  


Q ss_pred             eEeEeeCCCCCC--chh-------hcCCccEEEEcC
Q 020565          105 RVSVEKGDLSSL--DGE-------FYDKFDVVVVSC  131 (324)
Q Consensus       105 ~v~~~~~~~~~~--~~~-------~~~~~diVi~~~  131 (324)
                      ++.....++++.  ...       .+...|++|.+.
T Consensus        72 ~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lv~nA  107 (281)
T 3s55_A           72 RCISAKVDVKDRAALESFVAEAEDTLGGIDIAITNA  107 (281)
T ss_dssp             CEEEEECCTTCHHHHHHHHHHHHHHHTCCCEEEECC
T ss_pred             eEEEEeCCCCCHHHHHHHHHHHHHhcCCCCEEEECC
Confidence            344555555431  112       234678888764

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=93.21  E-value=0.15  Score=44.50  Aligned_cols=33  Identities=18%  Similarity=0.326  Sum_probs=28.3

Q ss_pred             HHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEE
Q 020565           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLM   61 (324)
Q Consensus        28 ~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lv   61 (324)
                      .|++++++|.|. ||+|.++++.|+..|.. +.++
T Consensus         5 ~l~~k~vlVTGas~GIG~aia~~la~~G~~-V~~~   38 (259)
T 3edm_A            5 RFTNRTIVVAGAGRDIGRACAIRFAQEGAN-VVLT   38 (259)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEE
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEE
Confidence            467889999996 68999999999999986 6665

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=93.18  E-value=0.18  Score=43.86  Aligned_cols=34  Identities=18%  Similarity=0.219  Sum_probs=28.8

Q ss_pred             HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      |++++|+|.|. |++|.++++.|+..|.. +.++|.
T Consensus         7 l~~k~vlVTGas~giG~~ia~~l~~~G~~-V~~~~r   41 (260)
T 2ae2_A            7 LEGCTALVTGGSRGIGYGIVEELASLGAS-VYTCSR   41 (260)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeC
Confidence            56788999996 78999999999999975 777665

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=93.15  E-value=0.13  Score=44.65  Aligned_cols=33  Identities=18%  Similarity=0.168  Sum_probs=27.3

Q ss_pred             hcCcEEEEcC-chhHHHHHHHHHH-hCCCcEEEEcC
Q 020565           30 SKSHILVCGM-KGTVAEFCKNIVL-AGVGSLTLMDD   63 (324)
Q Consensus        30 ~~~~VliiG~-g~lGsei~k~L~~-~Gv~~i~lvD~   63 (324)
                      +.++|+|.|+ |++|.++++.|+. .|. ++.+++.
T Consensus         3 ~~k~vlITGasggIG~~~a~~L~~~~g~-~V~~~~r   37 (276)
T 1wma_A            3 GIHVALVTGGNKGIGLAIVRDLCRLFSG-DVVLTAR   37 (276)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSS-EEEEEES
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHhcCC-eEEEEeC
Confidence            4578999995 7899999999999 897 4777665

>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2

Probab=93.15  E-value=0.13  Score=43.93  Aligned_cols=33  Identities=24%  Similarity=0.263  Sum_probs=27.4

Q ss_pred             cCcEEEEcC-chhHHHHHHHHHHhCCC------cEEEEcC
Q 020565           31 KSHILVCGM-KGTVAEFCKNIVLAGVG------SLTLMDD   63 (324)
Q Consensus        31 ~~~VliiG~-g~lGsei~k~L~~~Gv~------~i~lvD~   63 (324)
                      +++|+|.|. |++|.++++.|+..|..      ++.+++.
T Consensus         2 ~k~vlITGasggiG~~la~~l~~~G~~~~~~~~~V~~~~r   41 (244)
T 2bd0_A            2 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSR   41 (244)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEES
T ss_pred             CCEEEEECCCChHHHHHHHHHHHhcCcccccceEEEEEeC
Confidence            457999995 78999999999999985      5777664

>4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus}

Probab=93.14  E-value=0.33  Score=45.35  Aligned_cols=111  Identities=11%  Similarity=0.050  Sum_probs=64.8

Q ss_pred             CcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCC-------C
Q 020565           32 SHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNP-------M  103 (324)
Q Consensus        32 ~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp-------~  103 (324)
                      .+|+|.|+ |++|+++++.|...|. ++++++...-                   .....+.+.+.+++..+       .
T Consensus        70 ~~vlVTGatG~iG~~l~~~L~~~g~-~V~~~~R~~~-------------------~~~~~~~l~~~l~~~~~~~~~~~~~  129 (427)
T 4f6c_A           70 GNTLLTGATGFLGAYLIEALQGYSH-RIYCFIRADN-------------------EEIAWYKLMTNLNDYFSEETVEMML  129 (427)
T ss_dssp             EEEEEECTTSHHHHHHHHHHTTTEE-EEEEEEECSS-------------------HHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred             CEEEEecCCcHHHHHHHHHHHcCCC-EEEEEECCCC-------------------hHHHHHHHHHHHHHhcccccccccc
Confidence            48999996 8899999999988775 4666543110                   11122333333333321       1


Q ss_pred             CeEeEeeCCCCC-CchhhcCCccEEEEcCCCH--------------HHHHHHHHHHHhccCCccEEEeeecCceEEE
Q 020565          104 VRVSVEKGDLSS-LDGEFYDKFDVVVVSCCSV--------------TTKKLINEKCRKLSKRVAFYTVDCRDSCGEI  165 (324)
Q Consensus       104 v~v~~~~~~~~~-~~~~~~~~~diVi~~~~~~--------------~~~~~l~~~~~~~~~~ip~i~~~~~G~~g~v  165 (324)
                      .++.....++.+ ..-..+.++|+||.+....              .....+-+.|.+  ....||+.++.+. |..
T Consensus       130 ~~v~~v~~Dl~d~~~l~~~~~~d~Vih~A~~~~~~~~~~~~~~~Nv~g~~~l~~aa~~--~~~~~v~~SS~~~-G~~  203 (427)
T 4f6c_A          130 SNIEVIVGDFECMDDVVLPENMDTIIHAGARTDHFGDDDEFEKVNVQGTVDVIRLAQQ--HHARLIYVSTISV-GTY  203 (427)
T ss_dssp             TTEEEEEECC---CCCCCSSCCSEEEECCCCC-------CHHHHHHHHHHHHHHHHHH--TTCEEEEEEEGGG-GSE
T ss_pred             CceEEEeCCCCCcccCCCcCCCCEEEECCcccCCCCCHHHHHHHHHHHHHHHHHHHHh--cCCcEEEECchHh-CCC
Confidence            244455555543 1111567899999876421              112456677777  6778888888877 643

>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum}

Probab=93.13  E-value=0.16  Score=43.56  Aligned_cols=33  Identities=18%  Similarity=0.240  Sum_probs=27.8

Q ss_pred             HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEc
Q 020565           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMD   62 (324)
Q Consensus        29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD   62 (324)
                      +++++|+|.|+ |++|.++++.|+..|.. +.++|
T Consensus         3 l~~~~vlItGasggiG~~~a~~l~~~G~~-V~~~~   36 (247)
T 2hq1_A            3 LKGKTAIVTGSSRGLGKAIAWKLGNMGAN-IVLNG   36 (247)
T ss_dssp             TTTCEEEESSCSSHHHHHHHHHHHHTTCE-EEEEE
T ss_pred             CCCcEEEEECCCchHHHHHHHHHHHCCCE-EEEEc
Confidence            56788999996 78999999999999974 77763

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=93.12  E-value=0.15  Score=45.23  Aligned_cols=36  Identities=14%  Similarity=0.170  Sum_probs=28.8

Q ss_pred             HHHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           27 RRLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        27 ~~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      -.++.+.++|.|+ ||+|.++++.|+..|.. +.++|.
T Consensus        24 ~~~~~k~~lVTGas~GIG~aia~~la~~G~~-V~~~~r   60 (283)
T 3v8b_A           24 MNQPSPVALITGAGSGIGRATALALAADGVT-VGALGR   60 (283)
T ss_dssp             ---CCCEEEEESCSSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEeC
Confidence            3467889999996 78999999999999984 777765

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=93.10  E-value=0.21  Score=43.74  Aligned_cols=34  Identities=21%  Similarity=0.209  Sum_probs=29.1

Q ss_pred             HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      |++++++|.|. ||+|.++++.|+..|.. +.++|.
T Consensus        19 l~~k~vlVTGas~gIG~aia~~l~~~G~~-V~~~~r   53 (273)
T 1ae1_A           19 LKGTTALVTGGSKGIGYAIVEELAGLGAR-VYTCSR   53 (273)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             CCCCEEEEECCcchHHHHHHHHHHHCCCE-EEEEeC
Confidence            66788999996 78999999999999975 777765

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=93.08  E-value=0.079  Score=48.76  Aligned_cols=34  Identities=12%  Similarity=0.174  Sum_probs=30.3

Q ss_pred             cCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCc
Q 020565           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV   65 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~   65 (324)
                      +-||+|||+|..|..+|..|++.|+. ++|+|.+.
T Consensus         1 sm~V~IVGaGpaGl~~A~~L~~~G~~-v~v~Er~~   34 (412)
T 4hb9_A            1 SMHVGIIGAGIGGTCLAHGLRKHGIK-VTIYERNS   34 (412)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCE-EEEECSSC
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCC-EEEEecCC
Confidence            35899999999999999999999996 99998643

>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A*

Probab=93.08  E-value=0.23  Score=45.14  Aligned_cols=39  Identities=15%  Similarity=0.187  Sum_probs=28.1

Q ss_pred             HHHHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCC
Q 020565           26 QRRLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDR   64 (324)
Q Consensus        26 q~~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d   64 (324)
                      +..++..+|+|.|+ |.+|+.+++.|+..|..++++++..
T Consensus        41 ~~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~   80 (357)
T 2x6t_A           41 GSGIEGRMIIVTGGAGFIGSNIVKALNDKGITDILVVDNL   80 (357)
T ss_dssp             -------CEEEETTTSHHHHHHHHHHHHTTCCCEEEEECC
T ss_pred             cccCCCCEEEEECCCcHHHHHHHHHHHHCCCcEEEEEecC
Confidence            34566789999997 8899999999999996568888764

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=93.07  E-value=0.38  Score=42.15  Aligned_cols=62  Identities=18%  Similarity=0.178  Sum_probs=45.4

Q ss_pred             HHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeE
Q 020565           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRV  106 (324)
Q Consensus        28 ~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v  106 (324)
                      .|+++.++|-|. +|+|.++++.|+..|.. +.++|.                      .+.+.+.+++.+++....  +
T Consensus         4 sL~gKvalVTGas~GIG~aiA~~la~~Ga~-Vv~~~~----------------------~~~~~~~~~~~i~~~g~~--~   58 (254)
T 4fn4_A            4 SLKNKVVIVTGAGSGIGRAIAKKFALNDSI-VVAVEL----------------------LEDRLNQIVQELRGMGKE--V   58 (254)
T ss_dssp             GGTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEES----------------------CHHHHHHHHHHHHHTTCC--E
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCE-EEEEEC----------------------CHHHHHHHHHHHHhcCCc--E
Confidence            488999999996 68999999999999985 777765                      444666677777766543  3


Q ss_pred             eEeeCCCC
Q 020565          107 SVEKGDLS  114 (324)
Q Consensus       107 ~~~~~~~~  114 (324)
                      ..+..+++
T Consensus        59 ~~~~~Dvt   66 (254)
T 4fn4_A           59 LGVKADVS   66 (254)
T ss_dssp             EEEECCTT
T ss_pred             EEEEccCC
Confidence            34444443

>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*

Probab=93.07  E-value=0.27  Score=44.95  Aligned_cols=33  Identities=9%  Similarity=0.041  Sum_probs=26.1

Q ss_pred             cCcEEEEcCchhHHHHHHHHHHh--CCCcEEEEcC
Q 020565           31 KSHILVCGMKGTVAEFCKNIVLA--GVGSLTLMDD   63 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~~~--Gv~~i~lvD~   63 (324)
                      .-||.|||+|.+|...+++|...  |+.-+.++|.
T Consensus        13 ~~rvgiiG~G~~g~~~~~~l~~~~~~~~lvav~d~   47 (354)
T 3q2i_A           13 KIRFALVGCGRIANNHFGALEKHADRAELIDVCDI   47 (354)
T ss_dssp             CEEEEEECCSTTHHHHHHHHHHTTTTEEEEEEECS
T ss_pred             cceEEEEcCcHHHHHHHHHHHhCCCCeEEEEEEcC
Confidence            35799999999999999999987  5543446665

>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}

Probab=93.04  E-value=0.29  Score=44.67  Aligned_cols=33  Identities=6%  Similarity=-0.011  Sum_probs=25.5

Q ss_pred             cCcEEEEcCchhHHHHHHHHHHh-CCCcEEEEcC
Q 020565           31 KSHILVCGMKGTVAEFCKNIVLA-GVGSLTLMDD   63 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~~~-Gv~~i~lvD~   63 (324)
                      .-||.|||+|.+|...+++|... |+.-+.++|.
T Consensus         5 ~~~vgiiG~G~~g~~~~~~l~~~~~~~lvav~d~   38 (354)
T 3db2_A            5 PVGVAAIGLGRWAYVMADAYTKSEKLKLVTCYSR   38 (354)
T ss_dssp             CEEEEEECCSHHHHHHHHHHTTCSSEEEEEEECS
T ss_pred             cceEEEEccCHHHHHHHHHHHhCCCcEEEEEECC
Confidence            35899999999999999999876 5443345565

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=93.01  E-value=0.11  Score=48.01  Aligned_cols=34  Identities=18%  Similarity=0.068  Sum_probs=30.2

Q ss_pred             hcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        30 ~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      ...+|+|+|+|++|..++..+...|.+++..+|.
T Consensus       182 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~  215 (370)
T 4ej6_A          182 AGSTVAILGGGVIGLLTVQLARLAGATTVILSTR  215 (370)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECC
Confidence            3578999999999999999999999988888775

>2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii}

Probab=93.00  E-value=0.34  Score=43.35  Aligned_cols=109  Identities=22%  Similarity=0.193  Sum_probs=61.6

Q ss_pred             cCcEEEEcC-chhHHHHHHHHHHhCC-CcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeE
Q 020565           31 KSHILVCGM-KGTVAEFCKNIVLAGV-GSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV  108 (324)
Q Consensus        31 ~~~VliiG~-g~lGsei~k~L~~~Gv-~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~  108 (324)
                      +.+|+|.|+ |.+|+.+++.|+..|- -+++.+|...-.. +..                       .+.++...-.++.
T Consensus         3 ~m~vlVTGatG~iG~~l~~~L~~~g~~~~V~~~~r~~~~~-~~~-----------------------~~~~~~~~~~~~~   58 (336)
T 2hun_A            3 SMKLLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLGYGS-NPA-----------------------NLKDLEDDPRYTF   58 (336)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTC-CGG-----------------------GGTTTTTCTTEEE
T ss_pred             CCeEEEECCCchHHHHHHHHHHHhCCCCEEEEEecCcccC-chh-----------------------HHhhhccCCceEE
Confidence            457999995 8899999999999984 3577776532100 000                       0011111123444


Q ss_pred             eeCCCCCC--chhhcCCccEEEEcCCCH---------H--------HHHHHHHHHHhccCCccEEEeeecCceE
Q 020565          109 EKGDLSSL--DGEFYDKFDVVVVSCCSV---------T--------TKKLINEKCRKLSKRVAFYTVDCRDSCG  163 (324)
Q Consensus       109 ~~~~~~~~--~~~~~~~~diVi~~~~~~---------~--------~~~~l~~~~~~~~~~ip~i~~~~~G~~g  163 (324)
                      ...++.+.  ..+.+.++|+||.+....         .        ....+-+.|++.+....+|++++.+.+|
T Consensus        59 ~~~Dl~d~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS~~vyg  132 (336)
T 2hun_A           59 VKGDVADYELVKELVRKVDGVVHLAAESHVDRSISSPEIFLHSNVIGTYTLLESIRRENPEVRFVHVSTDEVYG  132 (336)
T ss_dssp             EECCTTCHHHHHHHHHTCSEEEECCCCCCHHHHHHCTHHHHHHHHHHHHHHHHHHHHHCTTSEEEEEEEGGGGC
T ss_pred             EEcCCCCHHHHHHHhhCCCEEEECCCCcChhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEeccHHHHC
Confidence            44555432  234456789998776421         0        1234456676622223788888876665

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=92.98  E-value=0.082  Score=47.27  Aligned_cols=35  Identities=9%  Similarity=0.193  Sum_probs=32.0

Q ss_pred             HHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565           28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        28 ~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      .|..++|+|+|+|.+|..+++.|...|. +++++|.
T Consensus       152 ~l~g~~v~IiG~G~iG~~~a~~l~~~G~-~V~~~dr  186 (293)
T 3d4o_A          152 TIHGANVAVLGLGRVGMSVARKFAALGA-KVKVGAR  186 (293)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCCCEEEEEeeCHHHHHHHHHHHhCCC-EEEEEEC
Confidence            4778999999999999999999999998 6888876

>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A

Probab=92.93  E-value=0.45  Score=41.91  Aligned_cols=102  Identities=13%  Similarity=0.094  Sum_probs=59.9

Q ss_pred             cCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEe
Q 020565           31 KSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVE  109 (324)
Q Consensus        31 ~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~  109 (324)
                      ..+|+|.|+ |.+|+.+++.|...|-.+++.++.+.                    .+.++    +.+..  +.  ++..
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~R~~--------------------~~~~~----~~l~~--~~--~~~~   56 (299)
T 2wm3_A            5 KKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNP--------------------RKKAA----KELRL--QG--AEVV   56 (299)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCSSEEEEEESCT--------------------TSHHH----HHHHH--TT--CEEE
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCceEEEEEcCC--------------------CCHHH----HHHHH--CC--CEEE
Confidence            468999998 88999999999999833466665421                    11111    12222  22  3344


Q ss_pred             eCCCCC--CchhhcCCccEEEEcCCCH---------HHHHHHHHHHHhccCCc-cEEEeeecCce
Q 020565          110 KGDLSS--LDGEFYDKFDVVVVSCCSV---------TTKKLINEKCRKLSKRV-AFYTVDCRDSC  162 (324)
Q Consensus       110 ~~~~~~--~~~~~~~~~diVi~~~~~~---------~~~~~l~~~~~~~~~~i-p~i~~~~~G~~  162 (324)
                      ..++.+  .....+++.|+||.+....         .....+-+.|++  .++ .+|..++.+.+
T Consensus        57 ~~D~~d~~~l~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~~~aa~~--~gv~~iv~~S~~~~~  119 (299)
T 2wm3_A           57 QGDQDDQVIMELALNGAYATFIVTNYWESCSQEQEVKQGKLLADLARR--LGLHYVVYSGLENIK  119 (299)
T ss_dssp             ECCTTCHHHHHHHHTTCSEEEECCCHHHHTCHHHHHHHHHHHHHHHHH--HTCSEEEECCCCCHH
T ss_pred             EecCCCHHHHHHHHhcCCEEEEeCCCCccccchHHHHHHHHHHHHHHH--cCCCEEEEEcCcccc
Confidence            445544  2345678899999886521         122345566766  454 36665555543

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=92.92  E-value=0.22  Score=46.05  Aligned_cols=34  Identities=15%  Similarity=0.183  Sum_probs=30.4

Q ss_pred             hcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        30 ~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      ...+|+|+|+|++|..++..+...|.++++.+|.
T Consensus       193 ~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~  226 (378)
T 3uko_A          193 PGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDI  226 (378)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcC
Confidence            3578999999999999999999999988988875

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*

Probab=92.91  E-value=0.23  Score=43.74  Aligned_cols=35  Identities=11%  Similarity=0.144  Sum_probs=30.2

Q ss_pred             HHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        28 ~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      .|++++++|.|. ||+|.++++.|+..|. ++.++|.
T Consensus        24 ~l~~k~~lVTGas~GIG~aia~~l~~~G~-~V~~~~r   59 (277)
T 4fc7_A           24 LLRDKVAFITGGGSGIGFRIAEIFMRHGC-HTVIASR   59 (277)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHTTTC-EEEEEES
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence            478899999996 6899999999999998 5777765

>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*

Probab=92.89  E-value=0.25  Score=42.75  Aligned_cols=34  Identities=18%  Similarity=0.189  Sum_probs=29.1

Q ss_pred             HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      +++++|+|.|+ |++|.++++.|+..|.. ++++|.
T Consensus        10 ~~~k~vlVTGasggiG~~~a~~l~~~G~~-V~~~~r   44 (265)
T 2o23_A           10 VKGLVAVITGGASGLGLATAERLVGQGAS-AVLLDL   44 (265)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEEC
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCE-EEEEeC
Confidence            56788999996 78999999999999975 777765

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=92.88  E-value=0.13  Score=46.96  Aligned_cols=34  Identities=12%  Similarity=0.007  Sum_probs=30.1

Q ss_pred             hcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        30 ~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      ...+|+|+|+|++|..++..+...|.++++.+|.
T Consensus       167 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~  200 (348)
T 2d8a_A          167 SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEP  200 (348)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECC
Confidence            5678999999999999999999999977888765

>1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2

Probab=92.87  E-value=0.27  Score=46.82  Aligned_cols=78  Identities=18%  Similarity=0.168  Sum_probs=51.5

Q ss_pred             cCcEEEEcCchh-HHHHHHHHHH--hCC--CcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHH----hhC
Q 020565           31 KSHILVCGMKGT-VAEFCKNIVL--AGV--GSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLK----DFN  101 (324)
Q Consensus        31 ~~~VliiG~g~l-Gsei~k~L~~--~Gv--~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~----~ln  101 (324)
                      ..+|.|||+|++ |..++..|+.  .+.  .+++|+|-+.                    |+.|++.+.....    ...
T Consensus         7 ~~KIaVIGaGsv~~~al~~~L~~~~~~l~~~ev~L~Di~~--------------------~~e~~~~~~~~~~~~~~~~~   66 (450)
T 1s6y_A            7 RLKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPE--------------------GKEKLEIVGALAKRMVEKAG   66 (450)
T ss_dssp             CEEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGG--------------------GHHHHHHHHHHHHHHHHHTT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCCCCCCEEEEEEcCC--------------------ChHHHHHHHHHHHHHHhhcC
Confidence            458999999998 8888888887  554  5799998721                    3345554332222    344


Q ss_pred             CCCeEeEeeCCCCCCchhhcCCccEEEEcCCC
Q 020565          102 PMVRVSVEKGDLSSLDGEFYDKFDVVVVSCCS  133 (324)
Q Consensus       102 p~v~v~~~~~~~~~~~~~~~~~~diVi~~~~~  133 (324)
                      ...++...     ....+.++++|+||.+...
T Consensus        67 ~~~~i~~t-----~D~~eal~gAD~VVitagv   93 (450)
T 1s6y_A           67 VPIEIHLT-----LDRRRALDGADFVTTQFRV   93 (450)
T ss_dssp             CCCEEEEE-----SCHHHHHTTCSEEEECCCT
T ss_pred             CCcEEEEe-----CCHHHHhCCCCEEEEcCCC
Confidence            45566543     1124568899999999874

>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}

Probab=92.86  E-value=0.098  Score=46.36  Aligned_cols=35  Identities=17%  Similarity=0.180  Sum_probs=29.7

Q ss_pred             HHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        28 ~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      .|++++|+|.|. ||+|.++++.|+..|.. +.++|.
T Consensus         5 ~l~gk~vlVTGas~GIG~aia~~la~~G~~-V~~~~r   40 (280)
T 3tox_A            5 RLEGKIAIVTGASSGIGRAAALLFAREGAK-VVVTAR   40 (280)
T ss_dssp             TTTTCEEEESSTTSHHHHHHHHHHHHTTCE-EEECCS
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEEC
Confidence            467788999996 78999999999999985 777665

>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}

Probab=92.85  E-value=0.37  Score=43.43  Aligned_cols=31  Identities=16%  Similarity=0.189  Sum_probs=25.0

Q ss_pred             cEEEEcCchhHHHH-HHHHHHhCCCcEEEEcC
Q 020565           33 HILVCGMKGTVAEF-CKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        33 ~VliiG~g~lGsei-~k~L~~~Gv~~i~lvD~   63 (324)
                      +|.|||+|.+|... ++.|...|+.-+.++|.
T Consensus         2 ~vgiiG~G~~g~~~~~~~l~~~~~~~vav~d~   33 (332)
T 2glx_A            2 RWGLIGASTIAREWVIGAIRATGGEVVSMMST   33 (332)
T ss_dssp             EEEEESCCHHHHHTHHHHHHHTTCEEEEEECS
T ss_pred             eEEEEcccHHHHHhhhHHhhcCCCeEEEEECC
Confidence            69999999999998 88888866654456666

>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8

Probab=92.85  E-value=0.85  Score=35.85  Aligned_cols=40  Identities=10%  Similarity=0.100  Sum_probs=29.0

Q ss_pred             HHHHHHhcCcEEEEcC----chhHHHHHHHHHHhCCCcEEEEcCC
Q 020565           24 DAQRRLSKSHILVCGM----KGTVAEFCKNIVLAGVGSLTLMDDR   64 (324)
Q Consensus        24 ~~q~~l~~~~VliiG~----g~lGsei~k~L~~~Gv~~i~lvD~d   64 (324)
                      .+...++..+|.|||+    |.+|..++++|...|.. +.-+|+.
T Consensus         7 ~~~~l~~p~~IavIGaS~~~g~~G~~~~~~L~~~G~~-V~~vnp~   50 (138)
T 1y81_A            7 HGSNSKEFRKIALVGASKNPAKYGNIILKDLLSKGFE-VLPVNPN   50 (138)
T ss_dssp             -------CCEEEEETCCSCTTSHHHHHHHHHHHTTCE-EEEECTT
T ss_pred             ccccccCCCeEEEEeecCCCCCHHHHHHHHHHHCCCE-EEEeCCC
Confidence            3456678889999999    99999999999999984 6666663

>1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2

Probab=92.84  E-value=0.23  Score=49.80  Aligned_cols=36  Identities=14%  Similarity=0.146  Sum_probs=27.7

Q ss_pred             HHHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           27 RRLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        27 ~~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      ..++.++|+|.|+ |.+|+.+++.|+..|. +++++|.
T Consensus         7 ~~~~~~~ilVTGatG~IG~~l~~~L~~~G~-~V~~~~r   43 (699)
T 1z45_A            7 SESTSKIVLVTGGAGYIGSHTVVELIENGY-DCVVADN   43 (699)
T ss_dssp             ----CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEEC
T ss_pred             cccCCCEEEEECCCCHHHHHHHHHHHHCcC-EEEEEEC
Confidence            3467789999995 8899999999999996 4777764

>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A*

Probab=92.83  E-value=0.24  Score=43.19  Aligned_cols=97  Identities=7%  Similarity=0.059  Sum_probs=57.9

Q ss_pred             cEEEEcC-chhHHHHHHHHHHh--CCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEe
Q 020565           33 HILVCGM-KGTVAEFCKNIVLA--GVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVE  109 (324)
Q Consensus        33 ~VliiG~-g~lGsei~k~L~~~--Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~  109 (324)
                      +|+|.|+ |.+|+.+++.|...  |. ++++++.+.-              ..        +    .+..  +.  ++..
T Consensus         1 ~ilVtGatG~iG~~l~~~L~~~~~g~-~V~~~~r~~~--------------~~--------~----~~~~--~~--~~~~   49 (286)
T 2zcu_A            1 MIAITGATGQLGHYVIESLMKTVPAS-QIVAIVRNPA--------------KA--------Q----ALAA--QG--ITVR   49 (286)
T ss_dssp             CEEEESTTSHHHHHHHHHHTTTSCGG-GEEEEESCTT--------------TC--------H----HHHH--TT--CEEE
T ss_pred             CEEEEcCCchHHHHHHHHHHhhCCCc-eEEEEEcChH--------------hh--------h----hhhc--CC--CeEE
Confidence            5899997 88999999999998  75 4777664210              00        0    0111  12  3334


Q ss_pred             eCCCCC--CchhhcCCccEEEEcCCC-----HHHHHHHHHHHHhccCCc-cEEEeeecCce
Q 020565          110 KGDLSS--LDGEFYDKFDVVVVSCCS-----VTTKKLINEKCRKLSKRV-AFYTVDCRDSC  162 (324)
Q Consensus       110 ~~~~~~--~~~~~~~~~diVi~~~~~-----~~~~~~l~~~~~~~~~~i-p~i~~~~~G~~  162 (324)
                      ..++.+  .....++++|+||.+...     ......+-+.|++  .++ .+|+.++.+.+
T Consensus        50 ~~D~~d~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~l~~a~~~--~~~~~~v~~Ss~~~~  108 (286)
T 2zcu_A           50 QADYGDEAALTSALQGVEKLLLISSSEVGQRAPQHRNVINAAKA--AGVKFIAYTSLLHAD  108 (286)
T ss_dssp             ECCTTCHHHHHHHTTTCSEEEECC--------CHHHHHHHHHHH--HTCCEEEEEEETTTT
T ss_pred             EcCCCCHHHHHHHHhCCCEEEEeCCCCchHHHHHHHHHHHHHHH--cCCCEEEEECCCCCC
Confidence            445543  234567788999877642     2334556677777  554 47777766543

>1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A*

Probab=92.78  E-value=0.81  Score=40.90  Aligned_cols=105  Identities=15%  Similarity=0.202  Sum_probs=61.5

Q ss_pred             cEEEEcC-chhHHHHHHHHHHh---CC--CcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeE
Q 020565           33 HILVCGM-KGTVAEFCKNIVLA---GV--GSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRV  106 (324)
Q Consensus        33 ~VliiG~-g~lGsei~k~L~~~---Gv--~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v  106 (324)
                      +|+|.|+ |.+|+.+++.|+..   |+  .+++++|...-.                  +..      +.+.++...-.+
T Consensus         2 ~vlVTGatG~iG~~l~~~L~~~~~~g~~~~~V~~~~r~~~~------------------~~~------~~~~~~~~~~~~   57 (337)
T 1r6d_A            2 RLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYA------------------GNR------ANLAPVDADPRL   57 (337)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTT------------------CCG------GGGGGGTTCTTE
T ss_pred             eEEEECCccHHHHHHHHHHHhhhcCCCCceEEEEEECCCcc------------------Cch------hhhhhcccCCCe
Confidence            6999995 89999999999996   63  467777653210                  000      001111111234


Q ss_pred             eEeeCCCCCC--chhhcCCccEEEEcCCCH-----------------HHHHHHHHHHHhccCCc-cEEEeeecCceE
Q 020565          107 SVEKGDLSSL--DGEFYDKFDVVVVSCCSV-----------------TTKKLINEKCRKLSKRV-AFYTVDCRDSCG  163 (324)
Q Consensus       107 ~~~~~~~~~~--~~~~~~~~diVi~~~~~~-----------------~~~~~l~~~~~~~~~~i-p~i~~~~~G~~g  163 (324)
                      +....++.+.  ....+.++|+||.+....                 .....+-+.|++  .++ .+|++++.+.+|
T Consensus        58 ~~~~~Dl~d~~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~Nv~~~~~l~~a~~~--~~~~~~v~~SS~~vyg  132 (337)
T 1r6d_A           58 RFVHGDIRDAGLLARELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVD--AGVGRVVHVSTNQVYG  132 (337)
T ss_dssp             EEEECCTTCHHHHHHHTTTCCEEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHH--TTCCEEEEEEEGGGGC
T ss_pred             EEEEcCCCCHHHHHHHhcCCCEEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHH--cCCCEEEEecchHHhC
Confidence            4455555542  244567889999876421                 112345567777  565 688888776665

>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A*

Probab=92.76  E-value=0.24  Score=43.23  Aligned_cols=97  Identities=13%  Similarity=0.044  Sum_probs=58.7

Q ss_pred             cCcEEEEc-CchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEe
Q 020565           31 KSHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVE  109 (324)
Q Consensus        31 ~~~VliiG-~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~  109 (324)
                      .++|+|.| .|++|.++++.|+..|. ++++.|.+.....                                 ...++.+
T Consensus         3 ~k~vlVTGasg~IG~~la~~L~~~G~-~V~~~~r~~~~~~---------------------------------~~~~~~~   48 (267)
T 3rft_A            3 MKRLLVTGAAGQLGRVMRERLAPMAE-ILRLADLSPLDPA---------------------------------GPNEECV   48 (267)
T ss_dssp             EEEEEEESTTSHHHHHHHHHTGGGEE-EEEEEESSCCCCC---------------------------------CTTEEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhcCC-EEEEEecCCcccc---------------------------------CCCCEEE
Confidence            45799999 58899999999999996 4777775432211                                 1123344


Q ss_pred             eCCCCC--CchhhcCCccEEEEcCC-----CHHH--------HHHHHHHHHhccCCc-cEEEeeecCceE
Q 020565          110 KGDLSS--LDGEFYDKFDVVVVSCC-----SVTT--------KKLINEKCRKLSKRV-AFYTVDCRDSCG  163 (324)
Q Consensus       110 ~~~~~~--~~~~~~~~~diVi~~~~-----~~~~--------~~~l~~~~~~~~~~i-p~i~~~~~G~~g  163 (324)
                      ..++.+  .....+++.|+||.+..     +...        ...+-+.|++  .+. .+|++++...+|
T Consensus        49 ~~Dl~d~~~~~~~~~~~D~vi~~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~--~~~~~iv~~SS~~~~g  116 (267)
T 3rft_A           49 QCDLADANAVNAMVAGCDGIVHLGGISVEKPFEQILQGNIIGLYNLYEAARA--HGQPRIVFASSNHTIG  116 (267)
T ss_dssp             ECCTTCHHHHHHHHTTCSEEEECCSCCSCCCHHHHHHHHTHHHHHHHHHHHH--TTCCEEEEEEEGGGGT
T ss_pred             EcCCCCHHHHHHHHcCCCEEEECCCCcCcCCHHHHHHHHHHHHHHHHHHHHH--cCCCEEEEEcchHHhC
Confidence            444443  12445567788886642     2222        2345567777  554 577777665444

>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}

Probab=92.76  E-value=0.23  Score=43.70  Aligned_cols=34  Identities=21%  Similarity=0.278  Sum_probs=29.3

Q ss_pred             HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      +++++|+|.|+ ||+|.++++.|+..|.. +.++|.
T Consensus        27 l~~k~vlVTGas~gIG~aia~~L~~~G~~-V~~~~r   61 (276)
T 2b4q_A           27 LAGRIALVTGGSRGIGQMIAQGLLEAGAR-VFICAR   61 (276)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEECS
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCCE-EEEEeC
Confidence            66788999996 78999999999999975 777765

>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A

Probab=92.75  E-value=0.21  Score=44.35  Aligned_cols=32  Identities=13%  Similarity=-0.064  Sum_probs=27.0

Q ss_pred             cCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           31 KSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        31 ~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      ..+|+|.|+ |.+|+.+++.|+..|. +++++|.
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r   34 (315)
T 2ydy_A            2 NRRVLVTGATGLLGRAVHKEFQQNNW-HAVGCGF   34 (315)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTTC-EEEEEC-
T ss_pred             CCeEEEECCCcHHHHHHHHHHHhCCC-eEEEEcc
Confidence            468999997 8899999999999995 5777774

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=92.75  E-value=0.19  Score=44.16  Aligned_cols=80  Identities=19%  Similarity=0.237  Sum_probs=50.4

Q ss_pred             HHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeE
Q 020565           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRV  106 (324)
Q Consensus        28 ~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v  106 (324)
                      .|+.++++|.|+ ||+|.++++.|+..|.. +.++|..                     ...+.+.+.+.+++..+  ++
T Consensus        28 ~l~gk~~lVTGas~GIG~aia~~la~~G~~-V~~~~~~---------------------~~~~~~~~~~~l~~~~~--~~   83 (271)
T 3v2g_A           28 SLAGKTAFVTGGSRGIGAAIAKRLALEGAA-VALTYVN---------------------AAERAQAVVSEIEQAGG--RA   83 (271)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESS---------------------CHHHHHHHHHHHHHTTC--CE
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCC---------------------CHHHHHHHHHHHHhcCC--cE
Confidence            367789999996 78999999999999986 6665431                     22345555666665544  33


Q ss_pred             eEeeCCCCCC--chhh-------cCCccEEEEcC
Q 020565          107 SVEKGDLSSL--DGEF-------YDKFDVVVVSC  131 (324)
Q Consensus       107 ~~~~~~~~~~--~~~~-------~~~~diVi~~~  131 (324)
                      .....++.+.  ....       +...|++|.+.
T Consensus        84 ~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lvnnA  117 (271)
T 3v2g_A           84 VAIRADNRDAEAIEQAIRETVEALGGLDILVNSA  117 (271)
T ss_dssp             EEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             EEEECCCCCHHHHHHHHHHHHHHcCCCcEEEECC
Confidence            4444454431  1112       23677777664

>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens}

Probab=92.75  E-value=0.1  Score=45.23  Aligned_cols=35  Identities=20%  Similarity=0.226  Sum_probs=29.5

Q ss_pred             HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCC
Q 020565           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDR   64 (324)
Q Consensus        29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d   64 (324)
                      +++++|+|.|+ |++|.++++.|+..|. +++++|.+
T Consensus         5 ~~~k~vlITGasggiG~~la~~l~~~G~-~V~~~~r~   40 (264)
T 2pd6_A            5 LRSALALVTGAGSGIGRAVSVRLAGEGA-TVAACDLD   40 (264)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCC
Confidence            56788999996 7899999999999997 47777653

>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0

Probab=92.74  E-value=0.28  Score=42.93  Aligned_cols=30  Identities=7%  Similarity=0.153  Sum_probs=26.4

Q ss_pred             cEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           33 HILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        33 ~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      +|+|.|+ |.+|+.+++.|...|. +++.++.
T Consensus         7 ~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r   37 (287)
T 3sc6_A            7 RVIITGANGQLGKQLQEELNPEEY-DIYPFDK   37 (287)
T ss_dssp             EEEEESTTSHHHHHHHHHSCTTTE-EEEEECT
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCC-EEEEecc
Confidence            7999995 8899999999999996 5777776

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=92.73  E-value=0.19  Score=43.50  Aligned_cols=35  Identities=26%  Similarity=0.283  Sum_probs=30.4

Q ss_pred             HHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        28 ~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      .|++++|+|.|. ||+|.++++.|+..|.. +.++|.
T Consensus         9 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~-V~~~~r   44 (252)
T 3f1l_A            9 LLNDRIILVTGASDGIGREAAMTYARYGAT-VILLGR   44 (252)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             ccCCCEEEEeCCCChHHHHHHHHHHHCCCE-EEEEeC
Confidence            478889999996 78999999999999985 777765

>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}

Probab=92.72  E-value=0.93  Score=35.91  Aligned_cols=36  Identities=17%  Similarity=0.227  Sum_probs=30.1

Q ss_pred             Hh-cCcEEEEcC----chhHHHHHHHHHHhCCCcEEEEcCCc
Q 020565           29 LS-KSHILVCGM----KGTVAEFCKNIVLAGVGSLTLMDDRV   65 (324)
Q Consensus        29 l~-~~~VliiG~----g~lGsei~k~L~~~Gv~~i~lvD~d~   65 (324)
                      |. ..+|.|||+    |.+|..++++|...|.. +..+|+..
T Consensus        10 l~~p~~IavIGas~~~g~~G~~~~~~L~~~G~~-v~~vnp~~   50 (145)
T 2duw_A           10 LTSTRTIALVGASDKPDRPSYRVMKYLLDQGYH-VIPVSPKV   50 (145)
T ss_dssp             HHHCCCEEEESCCSCTTSHHHHHHHHHHHHTCC-EEEECSSS
T ss_pred             HhCCCEEEEECcCCCCCChHHHHHHHHHHCCCE-EEEeCCcc
Confidence            44 688999999    78999999999999985 77777643

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=92.70  E-value=1.9  Score=35.51  Aligned_cols=91  Identities=12%  Similarity=0.037  Sum_probs=53.2

Q ss_pred             hcCcEEEEcCchhHHHHHHHHHHhC-CCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeE
Q 020565           30 SKSHILVCGMKGTVAEFCKNIVLAG-VGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV  108 (324)
Q Consensus        30 ~~~~VliiG~g~lGsei~k~L~~~G-v~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~  108 (324)
                      ...+|+-+|||. |.. +..|+..| -.+++.+|.                      .....+.+++++++..- -+++.
T Consensus        40 ~~~~vLDiG~G~-G~~-~~~la~~~~~~~v~~vD~----------------------s~~~~~~a~~~~~~~~~-~~v~~   94 (204)
T 3e05_A           40 DDLVMWDIGAGS-ASV-SIEASNLMPNGRIFALER----------------------NPQYLGFIRDNLKKFVA-RNVTL   94 (204)
T ss_dssp             TTCEEEEETCTT-CHH-HHHHHHHCTTSEEEEEEC----------------------CHHHHHHHHHHHHHHTC-TTEEE
T ss_pred             CCCEEEEECCCC-CHH-HHHHHHHCCCCEEEEEeC----------------------CHHHHHHHHHHHHHhCC-CcEEE
Confidence            456899999984 654 44455554 567888876                      44455666666665542 24555


Q ss_pred             eeCCCCCCchhhcCCccEEEEcCCCHHHHHHHHHHHHh
Q 020565          109 EKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRK  146 (324)
Q Consensus       109 ~~~~~~~~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~  146 (324)
                      ...+..+... ....||+|+...........+.+..+.
T Consensus        95 ~~~d~~~~~~-~~~~~D~i~~~~~~~~~~~~l~~~~~~  131 (204)
T 3e05_A           95 VEAFAPEGLD-DLPDPDRVFIGGSGGMLEEIIDAVDRR  131 (204)
T ss_dssp             EECCTTTTCT-TSCCCSEEEESCCTTCHHHHHHHHHHH
T ss_pred             EeCChhhhhh-cCCCCCEEEECCCCcCHHHHHHHHHHh
Confidence            5555433222 125799999876433334444444443

>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}

Probab=92.69  E-value=0.26  Score=45.24  Aligned_cols=36  Identities=11%  Similarity=0.123  Sum_probs=26.1

Q ss_pred             HHhcCcEEEEcCchhHHHHHHHHH-H-hCCCcEEEEcC
Q 020565           28 RLSKSHILVCGMKGTVAEFCKNIV-L-AGVGSLTLMDD   63 (324)
Q Consensus        28 ~l~~~~VliiG~g~lGsei~k~L~-~-~Gv~~i~lvD~   63 (324)
                      +++.-||.|||+|.+|...+.+|. . .|+.-+.++|.
T Consensus        20 ~m~~~rvgiIG~G~~g~~~~~~l~~~~~~~~lvav~d~   57 (357)
T 3ec7_A           20 QGMTLKAGIVGIGMIGSDHLRRLANTVSGVEVVAVCDI   57 (357)
T ss_dssp             --CCEEEEEECCSHHHHHHHHHHHHTCTTEEEEEEECS
T ss_pred             CCCeeeEEEECCcHHHHHHHHHHHhhCCCcEEEEEEeC
Confidence            445568999999999999999998 4 35543345665

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*

Probab=92.68  E-value=0.32  Score=41.33  Aligned_cols=77  Identities=22%  Similarity=0.217  Sum_probs=48.4

Q ss_pred             cCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEe
Q 020565           31 KSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVE  109 (324)
Q Consensus        31 ~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~  109 (324)
                      .++++|.|. ||+|.++++.|+..|.. +.+++.                      ...+.+.+.+.+.+.. ..++...
T Consensus         2 ~k~vlITGas~gIG~~ia~~l~~~G~~-V~~~~r----------------------~~~~~~~~~~~~~~~~-~~~~~~~   57 (235)
T 3l77_A            2 MKVAVITGASRGIGEAIARALARDGYA-LALGAR----------------------SVDRLEKIAHELMQEQ-GVEVFYH   57 (235)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTCE-EEEEES----------------------CHHHHHHHHHHHHHHH-CCCEEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeC----------------------CHHHHHHHHHHHHhhc-CCeEEEE
Confidence            457899996 78999999999999976 777654                      2334455555554222 2345555


Q ss_pred             eCCCCCC--chhhc-------CCccEEEEcC
Q 020565          110 KGDLSSL--DGEFY-------DKFDVVVVSC  131 (324)
Q Consensus       110 ~~~~~~~--~~~~~-------~~~diVi~~~  131 (324)
                      ..++.+.  ...++       ...|++|.+.
T Consensus        58 ~~D~~~~~~v~~~~~~~~~~~g~id~li~~A   88 (235)
T 3l77_A           58 HLDVSKAESVEEFSKKVLERFGDVDVVVANA   88 (235)
T ss_dssp             ECCTTCHHHHHHHCC-HHHHHSSCSEEEECC
T ss_pred             EeccCCHHHHHHHHHHHHHhcCCCCEEEECC
Confidence            5555431  12222       3678888764

>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*

Probab=92.64  E-value=0.16  Score=43.49  Aligned_cols=34  Identities=21%  Similarity=0.306  Sum_probs=28.4

Q ss_pred             HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      |++++|+|.|+ |++|.++++.|+..|.. ++++|.
T Consensus         5 ~~~~~vlVtGasggiG~~la~~l~~~G~~-V~~~~r   39 (248)
T 2pnf_A            5 LQGKVSLVTGSTRGIGRAIAEKLASAGST-VIITGT   39 (248)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEeC
Confidence            56778999986 78999999999999974 777655

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2

Probab=92.63  E-value=0.22  Score=43.59  Aligned_cols=36  Identities=19%  Similarity=0.222  Sum_probs=30.0

Q ss_pred             HHHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           27 RRLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        27 ~~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      ..|++++++|.|. ||+|.++++.|+..|.. +.++|.
T Consensus        17 ~~l~~k~~lVTGas~gIG~~ia~~l~~~G~~-V~~~~r   53 (267)
T 1vl8_A           17 FDLRGRVALVTGGSRGLGFGIAQGLAEAGCS-VVVASR   53 (267)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEeC
Confidence            3467788999996 78999999999999975 777665

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=92.63  E-value=0.096  Score=46.97  Aligned_cols=35  Identities=14%  Similarity=0.238  Sum_probs=31.9

Q ss_pred             HHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565           28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        28 ~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      .|..++|+|+|+|.+|..+++.|...|. +++++|.
T Consensus       154 ~l~g~~v~IiG~G~iG~~~a~~l~~~G~-~V~~~d~  188 (300)
T 2rir_A          154 TIHGSQVAVLGLGRTGMTIARTFAALGA-NVKVGAR  188 (300)
T ss_dssp             CSTTSEEEEECCSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCCCEEEEEcccHHHHHHHHHHHHCCC-EEEEEEC
Confidence            4678999999999999999999999998 6888876

>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2

Probab=92.63  E-value=0.21  Score=43.22  Aligned_cols=32  Identities=25%  Similarity=0.358  Sum_probs=26.6

Q ss_pred             cCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           31 KSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        31 ~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      +++++|.|. |++|.++++.|+..|.. +.++|.
T Consensus         2 ~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r   34 (256)
T 1geg_A            2 KKVALVTGAGQGIGKAIALRLVKDGFA-VAIADY   34 (256)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCE-EEEEeC
Confidence            467899995 78999999999999974 777654

>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti}

Probab=92.59  E-value=0.2  Score=45.44  Aligned_cols=84  Identities=18%  Similarity=0.143  Sum_probs=52.5

Q ss_pred             HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEe
Q 020565           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS  107 (324)
Q Consensus        29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~  107 (324)
                      +++++|+|.|+ ||+|.++++.|+..|.. +.+.+.+...              .   ...+.+.+.+.+.+..+  ++.
T Consensus         3 m~~k~vlVTGas~GIG~aia~~L~~~G~~-V~~~~r~~~~--------------r---~~~~~~~l~~~~~~~~~--~~~   62 (324)
T 3u9l_A            3 MSKKIILITGASSGFGRLTAEALAGAGHR-VYASMRDIVG--------------R---NASNVEAIAGFARDNDV--DLR   62 (324)
T ss_dssp             --CCEEEESSCSSHHHHHHHHHHHHTTCE-EEEEESCTTT--------------T---THHHHHHHHHHHHHHTC--CEE
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEecCcccc--------------c---CHHHHHHHHHHHHhcCC--cEE
Confidence            45678999996 78999999999999975 5554432111              1   34456666666666554  344


Q ss_pred             EeeCCCCCC--chhh-------cCCccEEEEcCC
Q 020565          108 VEKGDLSSL--DGEF-------YDKFDVVVVSCC  132 (324)
Q Consensus       108 ~~~~~~~~~--~~~~-------~~~~diVi~~~~  132 (324)
                      ....++++.  ....       +...|+||.+..
T Consensus        63 ~~~~Dvtd~~~v~~~~~~~~~~~g~iD~lVnnAG   96 (324)
T 3u9l_A           63 TLELDVQSQVSVDRAIDQIIGEDGRIDVLIHNAG   96 (324)
T ss_dssp             EEECCTTCHHHHHHHHHHHHHHHSCCSEEEECCC
T ss_pred             EEEeecCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            555555541  1222       237899987754

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=92.59  E-value=0.37  Score=41.94  Aligned_cols=35  Identities=14%  Similarity=0.197  Sum_probs=30.2

Q ss_pred             HHhcCcEEEEcCc---hhHHHHHHHHHHhCCCcEEEEcC
Q 020565           28 RLSKSHILVCGMK---GTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        28 ~l~~~~VliiG~g---~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      .|+++.++|-|++   |+|-++|+.|+..|.. +.+.|.
T Consensus         3 ~l~gK~alVTGaa~~~GIG~aiA~~la~~Ga~-Vvi~~r   40 (256)
T 4fs3_A            3 NLENKTYVIMGIANKRSIAFGVAKVLDQLGAK-LVFTYR   40 (256)
T ss_dssp             CCTTCEEEEECCCSTTCHHHHHHHHHHHTTCE-EEEEES
T ss_pred             CCCCCEEEEECCCCCchHHHHHHHHHHHCCCE-EEEEEC
Confidence            3788999999974   7999999999999985 888765

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*

Probab=92.59  E-value=0.15  Score=45.17  Aligned_cols=35  Identities=9%  Similarity=0.097  Sum_probs=29.8

Q ss_pred             HHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        28 ~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      .+++++|+|.|+ |++|.++++.|+..|.. ++++|.
T Consensus        23 ~l~~k~vlITGasggiG~~la~~L~~~G~~-V~~~~r   58 (302)
T 1w6u_A           23 SFQGKVAFITGGGTGLGKGMTTLLSSLGAQ-CVIASR   58 (302)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             cCCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEeC
Confidence            467789999996 78999999999999975 777765

>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens}

Probab=92.55  E-value=0.17  Score=43.98  Aligned_cols=35  Identities=29%  Similarity=0.373  Sum_probs=29.4

Q ss_pred             HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCC
Q 020565           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDR   64 (324)
Q Consensus        29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d   64 (324)
                      |++++|+|.|. |++|.++++.|+..|. ++.++|.+
T Consensus        10 l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~   45 (263)
T 3ak4_A           10 LSGRKAIVTGGSKGIGAAIARALDKAGA-TVAIADLD   45 (263)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCC
Confidence            56788999996 6899999999999997 47777653

>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0

Probab=92.52  E-value=0.25  Score=43.37  Aligned_cols=92  Identities=12%  Similarity=0.149  Sum_probs=56.4

Q ss_pred             HHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeE
Q 020565           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRV  106 (324)
Q Consensus        28 ~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v  106 (324)
                      .|++++++|.|. +|+|.++++.|+..|.. +.++|...-..+...+    ...     ...+.+...+.+...++  ++
T Consensus         8 ~l~~k~~lVTGas~GIG~a~a~~la~~G~~-V~~~~r~~~~~~~~~~----~~~-----~~~~~~~~~~~~~~~~~--~~   75 (277)
T 3tsc_A            8 KLEGRVAFITGAARGQGRAHAVRMAAEGAD-IIAVDIAGKLPSCVPY----DPA-----SPDDLSETVRLVEAANR--RI   75 (277)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEECCSCCCTTCCS----CCC-----CHHHHHHHHHHHHHTTC--CE
T ss_pred             ccCCCEEEEECCccHHHHHHHHHHHHcCCE-EEEEeccccccccccc----ccc-----CHHHHHHHHHHHHhcCC--eE
Confidence            477889999996 78999999999999985 7888764222211111    111     33455566666666554  34


Q ss_pred             eEeeCCCCCC--chh-------hcCCccEEEEcC
Q 020565          107 SVEKGDLSSL--DGE-------FYDKFDVVVVSC  131 (324)
Q Consensus       107 ~~~~~~~~~~--~~~-------~~~~~diVi~~~  131 (324)
                      .....++.+.  ...       .+...|++|.+.
T Consensus        76 ~~~~~D~~~~~~v~~~~~~~~~~~g~id~lvnnA  109 (277)
T 3tsc_A           76 VAAVVDTRDFDRLRKVVDDGVAALGRLDIIVANA  109 (277)
T ss_dssp             EEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             EEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            4444555431  111       234678888765

>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A

Probab=92.51  E-value=0.16  Score=44.47  Aligned_cols=35  Identities=23%  Similarity=0.393  Sum_probs=29.1

Q ss_pred             HHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        28 ~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      ++++++|+|.|+ ||+|.++++.|+..|.. +.+++.
T Consensus        26 ~l~~k~vlITGas~gIG~~la~~l~~~G~~-V~~~~r   61 (271)
T 4iin_A           26 QFTGKNVLITGASKGIGAEIAKTLASMGLK-VWINYR   61 (271)
T ss_dssp             CCSCCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             ccCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeC
Confidence            367788999996 78999999999999985 666554

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*

Probab=92.50  E-value=0.59  Score=39.62  Aligned_cols=35  Identities=14%  Similarity=-0.018  Sum_probs=27.3

Q ss_pred             hcCcEEEEcC-chhHHHHHHHHHHhC-CCcEEEEcCC
Q 020565           30 SKSHILVCGM-KGTVAEFCKNIVLAG-VGSLTLMDDR   64 (324)
Q Consensus        30 ~~~~VliiG~-g~lGsei~k~L~~~G-v~~i~lvD~d   64 (324)
                      +..+|+|.|+ |++|..+++.|+..| -.++++++.+
T Consensus         3 ~~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r~   39 (253)
T 1xq6_A            3 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRS   39 (253)
T ss_dssp             SCCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEESC
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEcC
Confidence            3568999995 889999999999994 2347776653

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=92.48  E-value=0.13  Score=41.91  Aligned_cols=33  Identities=15%  Similarity=0.159  Sum_probs=29.6

Q ss_pred             CcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCc
Q 020565           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV   65 (324)
Q Consensus        32 ~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~   65 (324)
                      .+|+|||.|..|.++|..|++.|. +++++|...
T Consensus         2 ~~vvIIGgG~~Gl~~A~~l~~~g~-~v~lie~~~   34 (180)
T 2ywl_A            2 WDVIVVGGGPSGLSAALFLARAGL-KVLVLDGGR   34 (180)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTC-CEEEEECSC
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCC-cEEEEeCCC
Confidence            369999999999999999999998 499998754

>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*

Probab=92.48  E-value=0.25  Score=42.64  Aligned_cols=35  Identities=23%  Similarity=0.337  Sum_probs=30.1

Q ss_pred             HHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        28 ~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      +|+.++++|.|. ||+|.++++.|+..|.. +.++|.
T Consensus         3 ~l~gk~vlVTGas~gIG~a~a~~l~~~G~~-V~~~~r   38 (247)
T 3rwb_A            3 RLAGKTALVTGAAQGIGKAIAARLAADGAT-VIVSDI   38 (247)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEECS
T ss_pred             CcCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEeC
Confidence            477889999996 78999999999999975 777665

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=92.47  E-value=0.3  Score=42.35  Aligned_cols=35  Identities=26%  Similarity=0.415  Sum_probs=30.0

Q ss_pred             HHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        28 ~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      .+++++|+|.|. ||+|.++++.|+..|.. +.++|.
T Consensus         5 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r   40 (259)
T 4e6p_A            5 RLEGKSALITGSARGIGRAFAEAYVREGAT-VAIADI   40 (259)
T ss_dssp             TTTTCEEEEETCSSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             cCCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeC
Confidence            467789999996 78999999999999985 777765

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A

Probab=92.46  E-value=0.4  Score=43.59  Aligned_cols=79  Identities=11%  Similarity=0.093  Sum_probs=49.4

Q ss_pred             CcEEEEcC-chhHHHHHHHHHHhCCC------cEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhh-CCC
Q 020565           32 SHILVCGM-KGTVAEFCKNIVLAGVG------SLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDF-NPM  103 (324)
Q Consensus        32 ~~VliiG~-g~lGsei~k~L~~~Gv~------~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~l-np~  103 (324)
                      .||+|+|+ |.+|+.++..|+..|..      ++.++|.+.=               -   ...|++..+..|... .|.
T Consensus         6 ~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~---------------~---~~~~~~g~~~dl~~~~~~~   67 (329)
T 1b8p_A            6 MRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNE---------------K---AQKALQGVMMEIDDCAFPL   67 (329)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCH---------------H---HHHHHHHHHHHHHTTTCTT
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCc---------------c---ccccchhhHHHHhhhcccc
Confidence            58999998 99999999999998873      7888876200               0   033444444445542 232


Q ss_pred             CeEeEeeCCCCCCchhhcCCccEEEEcCC
Q 020565          104 VRVSVEKGDLSSLDGEFYDKFDVVVVSCC  132 (324)
Q Consensus       104 v~v~~~~~~~~~~~~~~~~~~diVi~~~~  132 (324)
                      . .....   .....+.++++|+||.+..
T Consensus        68 ~-~~i~~---~~~~~~al~~aD~Vi~~ag   92 (329)
T 1b8p_A           68 L-AGMTA---HADPMTAFKDADVALLVGA   92 (329)
T ss_dssp             E-EEEEE---ESSHHHHTTTCSEEEECCC
T ss_pred             c-CcEEE---ecCcHHHhCCCCEEEEeCC
Confidence            2 11111   1223566889999997754

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=92.41  E-value=0.046  Score=49.57  Aligned_cols=35  Identities=14%  Similarity=0.062  Sum_probs=31.4

Q ss_pred             HHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565           28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        28 ~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      .|..++|.|||+|.+|..+++.|...|.. ++.+|.
T Consensus       139 ~l~g~~vgIIG~G~IG~~~A~~l~~~G~~-V~~~d~  173 (313)
T 2ekl_A          139 ELAGKTIGIVGFGRIGTKVGIIANAMGMK-VLAYDI  173 (313)
T ss_dssp             CCTTCEEEEESCSHHHHHHHHHHHHTTCE-EEEECS
T ss_pred             CCCCCEEEEEeeCHHHHHHHHHHHHCCCE-EEEECC
Confidence            58889999999999999999999999974 777776

>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*

Probab=92.41  E-value=0.068  Score=49.12  Aligned_cols=37  Identities=8%  Similarity=0.056  Sum_probs=32.9

Q ss_pred             HHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565           27 RRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (324)
Q Consensus        27 ~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d   64 (324)
                      ..|..++|.|||+|.+|..+|+.|...|.. ++.+|..
T Consensus       144 ~~l~gktvgIiGlG~IG~~vA~~l~~~G~~-V~~~d~~  180 (343)
T 2yq5_A          144 NEIYNLTVGLIGVGHIGSAVAEIFSAMGAK-VIAYDVA  180 (343)
T ss_dssp             CCGGGSEEEEECCSHHHHHHHHHHHHTTCE-EEEECSS
T ss_pred             cccCCCeEEEEecCHHHHHHHHHHhhCCCE-EEEECCC
Confidence            358899999999999999999999999985 8888874

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=92.41  E-value=0.2  Score=44.69  Aligned_cols=35  Identities=26%  Similarity=0.324  Sum_probs=30.0

Q ss_pred             HHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        28 ~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      .|+.++|+|.|. ||+|.++++.|+..|. ++.++|.
T Consensus        38 ~l~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~r   73 (293)
T 3rih_A           38 DLSARSVLVTGGTKGIGRGIATVFARAGA-NVAVAAR   73 (293)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEEC
Confidence            467788999996 7899999999999998 4888776

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*

Probab=92.40  E-value=0.36  Score=43.63  Aligned_cols=33  Identities=21%  Similarity=0.168  Sum_probs=28.7

Q ss_pred             cEEEEcC-chhHHHHHHHHHHhCC-CcEEEEcCCc
Q 020565           33 HILVCGM-KGTVAEFCKNIVLAGV-GSLTLMDDRV   65 (324)
Q Consensus        33 ~VliiG~-g~lGsei~k~L~~~Gv-~~i~lvD~d~   65 (324)
                      ||+|+|+ |.+|..++..|+..|. .++.++|-+.
T Consensus         2 KI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~   36 (314)
T 1mld_A            2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH   36 (314)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSS
T ss_pred             EEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCc
Confidence            7999998 9999999999998885 6799998743

>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A

Probab=92.39  E-value=0.69  Score=41.46  Aligned_cols=73  Identities=21%  Similarity=0.187  Sum_probs=47.8

Q ss_pred             cEEEEc-CchhHHHHHHHHHHhCCC-cEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHh---hCCCCeEe
Q 020565           33 HILVCG-MKGTVAEFCKNIVLAGVG-SLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKD---FNPMVRVS  107 (324)
Q Consensus        33 ~VliiG-~g~lGsei~k~L~~~Gv~-~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~---lnp~v~v~  107 (324)
                      ||+|+| +|.+|+.++..|+..|.. ++.|+|.    +.                ...|++.....|..   +...+++.
T Consensus         2 KI~IiGAaG~vG~~l~~~L~~~~~~~el~L~Di----~~----------------~~~~~~~~~~dl~~~~~~~~~~~v~   61 (303)
T 1o6z_A            2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDI----PD----------------KEDDTVGQAADTNHGIAYDSNTRVR   61 (303)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECC----GG----------------GHHHHHHHHHHHHHHHTTTCCCEEE
T ss_pred             EEEEECCCChHHHHHHHHHHhCCCCCEEEEEcC----CC----------------ChhhHHHHHHHHHHHHhhCCCcEEE
Confidence            799999 999999999999998864 4888876    10                11122222233333   24455555


Q ss_pred             EeeCCCCCCchhhcCCccEEEEcCC
Q 020565          108 VEKGDLSSLDGEFYDKFDVVVVSCC  132 (324)
Q Consensus       108 ~~~~~~~~~~~~~~~~~diVi~~~~  132 (324)
                      .  .     ..+.++++|+||.+..
T Consensus        62 ~--~-----~~~a~~~aDvVi~~ag   79 (303)
T 1o6z_A           62 Q--G-----GYEDTAGSDVVVITAG   79 (303)
T ss_dssp             E--C-----CGGGGTTCSEEEECCC
T ss_pred             e--C-----CHHHhCCCCEEEEcCC
Confidence            4  1     1455889999998864

>2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A {Thermus thermophilus}

Probab=92.38  E-value=0.48  Score=43.21  Aligned_cols=86  Identities=10%  Similarity=0.018  Sum_probs=52.3

Q ss_pred             cCcEEEEcCchhHHHHHHHHHHhC---------CCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhC
Q 020565           31 KSHILVCGMKGTVAEFCKNIVLAG---------VGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFN  101 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~~~G---------v~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~ln  101 (324)
                      .-+|.|+|+|.+|+.+++.|....         +.-..+.|.+....           .++   +.              
T Consensus         3 ~irvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~-----------~~~---~~--------------   54 (332)
T 2ejw_A            3 ALKIALLGGGTVGSAFYNLVLERAEELSAFGVVPRFLGVLVRDPRKP-----------RAI---PQ--------------   54 (332)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTGGGGGGGTEEEEEEEEECSCTTSC-----------CSS---CG--------------
T ss_pred             eeEEEEEcCCHHHHHHHHHHHhChhhHhhcCCCEEEEEEEECCHHHh-----------hcc---Cc--------------
Confidence            357999999999999999998753         33234455542111           111   10              


Q ss_pred             CCCeEeEeeCCCCCCchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEe
Q 020565          102 PMVRVSVEKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTV  156 (324)
Q Consensus       102 p~v~v~~~~~~~~~~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~  156 (324)
                        ..   ...++    ++++ +.|+|+.|+.+......+...|-+  .++.++.+
T Consensus        55 --~~---~~~d~----~~ll-~iDvVve~t~~~~~a~~~~~~AL~--aGKhVVta   97 (332)
T 2ejw_A           55 --EL---LRAEP----FDLL-EADLVVEAMGGVEAPLRLVLPALE--AGIPLITA   97 (332)
T ss_dssp             --GG---EESSC----CCCT-TCSEEEECCCCSHHHHHHHHHHHH--TTCCEEEC
T ss_pred             --cc---ccCCH----HHHh-CCCEEEECCCCcHHHHHHHHHHHH--cCCeEEEC
Confidence              00   11122    2334 889999999877555555556666  77777764

>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}

Probab=92.38  E-value=0.32  Score=43.94  Aligned_cols=32  Identities=9%  Similarity=0.001  Sum_probs=25.0

Q ss_pred             CcEEEEcCchhHHHHHHHHHHh-CCCcEEEEcC
Q 020565           32 SHILVCGMKGTVAEFCKNIVLA-GVGSLTLMDD   63 (324)
Q Consensus        32 ~~VliiG~g~lGsei~k~L~~~-Gv~~i~lvD~   63 (324)
                      -||.|||+|.+|...+++|... |+.-+.++|.
T Consensus         4 ~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~   36 (331)
T 4hkt_A            4 VRFGLLGAGRIGKVHAKAVSGNADARLVAVADA   36 (331)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECS
T ss_pred             eEEEEECCCHHHHHHHHHHhhCCCcEEEEEECC
Confidence            4799999999999999999985 5443335665

>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A*

Probab=92.36  E-value=0.42  Score=41.60  Aligned_cols=35  Identities=23%  Similarity=0.257  Sum_probs=29.4

Q ss_pred             HHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        28 ~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      .+++++|+|.|+ |++|.++++.|+..|. ++.++|.
T Consensus        13 ~l~~k~vlITGasggiG~~~a~~l~~~G~-~V~~~~r   48 (278)
T 2bgk_A           13 RLQDKVAIITGGAGGIGETTAKLFVRYGA-KVVIADI   48 (278)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             cccCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcC
Confidence            367789999996 7899999999999997 4777654

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=92.33  E-value=0.12  Score=46.19  Aligned_cols=32  Identities=22%  Similarity=0.251  Sum_probs=28.7

Q ss_pred             CcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (324)
Q Consensus        32 ~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d   64 (324)
                      .+|.|||+|.+|+.++..|+.+|. +++++|.+
T Consensus        16 ~~I~VIG~G~mG~~iA~~la~~G~-~V~~~d~~   47 (302)
T 1f0y_A           16 KHVTVIGGGLMGAGIAQVAAATGH-TVVLVDQT   47 (302)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCC-eEEEEECC
Confidence            479999999999999999999997 58898873

>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum}

Probab=92.33  E-value=0.29  Score=42.45  Aligned_cols=32  Identities=16%  Similarity=0.267  Sum_probs=26.8

Q ss_pred             cCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           31 KSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        31 ~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      +++++|.|. ||+|.++++.|+..|.. +.++|.
T Consensus         2 ~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r   34 (258)
T 3a28_C            2 SKVAMVTGGAQGIGRGISEKLAADGFD-IAVADL   34 (258)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTCE-EEEEEC
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeC
Confidence            467899995 78999999999999975 777665

>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*

Probab=92.32  E-value=0.25  Score=45.01  Aligned_cols=32  Identities=22%  Similarity=0.184  Sum_probs=24.2

Q ss_pred             CcEEEEcCchhHHHHHHHHH-H-hCCCcEEEEcC
Q 020565           32 SHILVCGMKGTVAEFCKNIV-L-AGVGSLTLMDD   63 (324)
Q Consensus        32 ~~VliiG~g~lGsei~k~L~-~-~Gv~~i~lvD~   63 (324)
                      -+|.|||+|.+|...+.+|. . .|+.-+.++|.
T Consensus         3 ~rigiIG~G~~g~~~~~~l~~~~~~~~l~av~d~   36 (344)
T 3mz0_A            3 LRIGVIGTGAIGKEHINRITNKLSGAEIVAVTDV   36 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTCSSEEEEEEECS
T ss_pred             EEEEEECccHHHHHHHHHHHhhCCCcEEEEEEcC
Confidence            47999999999999999998 4 35443335555

>1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2

Probab=92.31  E-value=0.34  Score=42.70  Aligned_cols=32  Identities=19%  Similarity=0.232  Sum_probs=27.3

Q ss_pred             cEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCC
Q 020565           33 HILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDR   64 (324)
Q Consensus        33 ~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d   64 (324)
                      +|+|.|+ |.+|+.+++.|...|..++++++..
T Consensus         1 ~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~   33 (310)
T 1eq2_A            1 MIIVTGGAGFIGSNIVKALNDKGITDILVVDNL   33 (310)
T ss_dssp             CEEEETTTSHHHHHHHHHHHTTTCCCEEEEECC
T ss_pred             CEEEEcCccHHHHHHHHHHHHCCCcEEEEEccC
Confidence            5899997 8899999999999995568887653

>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A*

Probab=92.31  E-value=0.18  Score=43.70  Aligned_cols=64  Identities=14%  Similarity=0.239  Sum_probs=45.8

Q ss_pred             HhcCcEEEEcC-chhHHHHHHHHHH---hCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCC
Q 020565           29 LSKSHILVCGM-KGTVAEFCKNIVL---AGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMV  104 (324)
Q Consensus        29 l~~~~VliiG~-g~lGsei~k~L~~---~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v  104 (324)
                      |++++++|.|. ||+|.++++.|+.   .|.. +.++|.                      ...+.+.+.+.+.+.+|..
T Consensus         4 l~~k~~lVTGas~gIG~~ia~~l~~~~~~G~~-V~~~~r----------------------~~~~~~~~~~~l~~~~~~~   60 (259)
T 1oaa_A            4 LGCAVCVLTGASRGFGRALAPQLARLLSPGSV-MLVSAR----------------------SESMLRQLKEELGAQQPDL   60 (259)
T ss_dssp             CBSEEEEESSCSSHHHHHHHHHHHTTBCTTCE-EEEEES----------------------CHHHHHHHHHHHHHHCTTS
T ss_pred             CCCcEEEEeCCCChHHHHHHHHHHHhhcCCCe-EEEEeC----------------------CHHHHHHHHHHHHhhCCCC
Confidence            56678999996 7899999999999   8874 777654                      2234555666676666666


Q ss_pred             eEeEeeCCCCC
Q 020565          105 RVSVEKGDLSS  115 (324)
Q Consensus       105 ~v~~~~~~~~~  115 (324)
                      ++.....++++
T Consensus        61 ~~~~~~~Dv~~   71 (259)
T 1oaa_A           61 KVVLAAADLGT   71 (259)
T ss_dssp             EEEEEECCTTS
T ss_pred             eEEEEecCCCC
Confidence            66666666654

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=92.31  E-value=0.11  Score=46.38  Aligned_cols=33  Identities=9%  Similarity=0.056  Sum_probs=29.3

Q ss_pred             cCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d   64 (324)
                      +.+|+|||+|++|+.++..|+.+|. +++++|.+
T Consensus         2 ~mkI~iiGaGa~G~~~a~~L~~~g~-~V~~~~r~   34 (294)
T 3g17_A            2 SLSVAIIGPGAVGTTIAYELQQSLP-HTTLIGRH   34 (294)
T ss_dssp             -CCEEEECCSHHHHHHHHHHHHHCT-TCEEEESS
T ss_pred             CcEEEEECCCHHHHHHHHHHHHCCC-eEEEEEec
Confidence            3589999999999999999999996 69999875

>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A

Probab=92.29  E-value=0.48  Score=42.42  Aligned_cols=99  Identities=15%  Similarity=0.093  Sum_probs=59.7

Q ss_pred             cEEEEcC-chhHHHHHHHHHHh-CCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEee
Q 020565           33 HILVCGM-KGTVAEFCKNIVLA-GVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEK  110 (324)
Q Consensus        33 ~VliiG~-g~lGsei~k~L~~~-Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~  110 (324)
                      +|+|.|+ |.+|+.+++.|... |. +++++|...-....+                             ...-.++...
T Consensus         2 ~vlVtGatG~iG~~l~~~L~~~~g~-~V~~~~r~~~~~~~~-----------------------------~~~~~~~~~~   51 (345)
T 2bll_A            2 RVLILGVNGFIGNHLTERLLREDHY-EVYGLDIGSDAISRF-----------------------------LNHPHFHFVE   51 (345)
T ss_dssp             EEEEETCSSHHHHHHHHHHHHSTTC-EEEEEESCCGGGGGG-----------------------------TTCTTEEEEE
T ss_pred             eEEEECCCcHHHHHHHHHHHHhCCC-EEEEEeCCcchHHHh-----------------------------hcCCCeEEEe
Confidence            6999997 88999999999998 65 477776532111100                             0011234444


Q ss_pred             CCCCCC---chhhcCCccEEEEcCC--CH-------H--------HHHHHHHHHHhccCCccEEEeeecCceE
Q 020565          111 GDLSSL---DGEFYDKFDVVVVSCC--SV-------T--------TKKLINEKCRKLSKRVAFYTVDCRDSCG  163 (324)
Q Consensus       111 ~~~~~~---~~~~~~~~diVi~~~~--~~-------~--------~~~~l~~~~~~~~~~ip~i~~~~~G~~g  163 (324)
                      .++.+.   ....++++|+||.+..  ..       .        ....+-+.|++  .+..+|++++.+.+|
T Consensus        52 ~D~~~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~--~~~~~v~~SS~~v~g  122 (345)
T 2bll_A           52 GDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVK--YRKRIIFPSTSEVYG  122 (345)
T ss_dssp             CCTTTCSHHHHHHHHHCSEEEECBCCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHH--TTCEEEEECCGGGGB
T ss_pred             ccccCcHHHHHhhccCCCEEEEcccccCccchhcCHHHHHHHHHHHHHHHHHHHHH--hCCeEEEEecHHHcC
Confidence            455431   2344567888887643  11       1        12345567777  557788888877666

>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}

Probab=92.27  E-value=0.34  Score=41.90  Aligned_cols=35  Identities=20%  Similarity=0.329  Sum_probs=29.9

Q ss_pred             HHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        28 ~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      .++.++|+|.|. ||+|.++++.|+..|.. +.++|.
T Consensus         6 ~l~~k~vlITGas~gIG~~~a~~l~~~G~~-V~~~~r   41 (261)
T 3n74_A            6 SLEGKVALITGAGSGFGEGMAKRFAKGGAK-VVIVDR   41 (261)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             cCCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEcC
Confidence            367789999996 68999999999999975 888765

>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A*

Probab=92.27  E-value=0.3  Score=42.45  Aligned_cols=34  Identities=26%  Similarity=0.336  Sum_probs=29.0

Q ss_pred             HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      |+.++|+|.|+ ||+|.++++.|+..|.. +.++|.
T Consensus         5 l~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r   39 (260)
T 1nff_A            5 LTGKVALVSGGARGMGASHVRAMVAEGAK-VVFGDI   39 (260)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEeC
Confidence            56788999996 78999999999999975 777665

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=92.26  E-value=0.3  Score=44.29  Aligned_cols=34  Identities=18%  Similarity=0.167  Sum_probs=30.7

Q ss_pred             hcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        30 ~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      ...+|+|.|+|++|...+..+...|...++.+|.
T Consensus       160 ~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~  193 (346)
T 4a2c_A          160 ENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDI  193 (346)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEES
T ss_pred             CCCEEEEECCCCcchHHHHHHHHcCCcEEEEEec
Confidence            5678999999999999999999999998888876

>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus}

Probab=92.23  E-value=0.18  Score=43.19  Aligned_cols=32  Identities=16%  Similarity=0.236  Sum_probs=27.0

Q ss_pred             cCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           31 KSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        31 ~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      +++|+|.|. |++|.++++.|+..|. ++.++|.
T Consensus         2 ~k~vlItGasggiG~~~a~~l~~~G~-~V~~~~r   34 (250)
T 2cfc_A            2 SRVAIVTGASSGNGLAIATRFLARGD-RVAALDL   34 (250)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence            467899996 7899999999999996 4777765

>3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus}

Probab=92.16  E-value=0.46  Score=41.34  Aligned_cols=31  Identities=13%  Similarity=0.175  Sum_probs=25.6

Q ss_pred             CcEEEEcCchhHHHHHHHHHHhCCCcEEE-EcC
Q 020565           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTL-MDD   63 (324)
Q Consensus        32 ~~VliiG~g~lGsei~k~L~~~Gv~~i~l-vD~   63 (324)
                      -||.|+|+|.+|..+++.+...+- .+.- +|.
T Consensus         4 mkI~ViGaGrMG~~i~~~l~~~~~-eLva~~d~   35 (243)
T 3qy9_A            4 MKILLIGYGAMNQRVARLAEEKGH-EIVGVIEN   35 (243)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEEECS
T ss_pred             eEEEEECcCHHHHHHHHHHHhCCC-EEEEEEec
Confidence            579999999999999999998875 5553 454

>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris}

Probab=92.09  E-value=0.35  Score=42.72  Aligned_cols=32  Identities=16%  Similarity=0.154  Sum_probs=26.7

Q ss_pred             cCcEEEEcC-chhHHHHHHHHHHh--CCCcEEEEcC
Q 020565           31 KSHILVCGM-KGTVAEFCKNIVLA--GVGSLTLMDD   63 (324)
Q Consensus        31 ~~~VliiG~-g~lGsei~k~L~~~--Gv~~i~lvD~   63 (324)
                      +.+|+|.|+ |.+|+.+++.|...  |. +++++|.
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~~~g~-~V~~~~r   36 (312)
T 2yy7_A            2 NPKILIIGACGQIGTELTQKLRKLYGTE-NVIASDI   36 (312)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHHHCGG-GEEEEES
T ss_pred             CceEEEECCccHHHHHHHHHHHHhCCCC-EEEEEcC
Confidence            468999997 88999999999998  64 5777765

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=92.07  E-value=0.15  Score=43.61  Aligned_cols=34  Identities=21%  Similarity=0.232  Sum_probs=30.7

Q ss_pred             hcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (324)
Q Consensus        30 ~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d   64 (324)
                      ++..|+|||.|..|.++|..|++.|.. ++++|..
T Consensus         2 ~~~dVvVVGgG~aGl~aA~~la~~g~~-v~lie~~   35 (232)
T 2cul_A            2 AAYQVLIVGAGFSGAETAFWLAQKGVR-VGLLTQS   35 (232)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTCC-EEEEESC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCC-EEEEecC
Confidence            457899999999999999999999985 8999875

>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis}

Probab=92.05  E-value=0.12  Score=45.26  Aligned_cols=34  Identities=18%  Similarity=0.163  Sum_probs=29.0

Q ss_pred             HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      +++++|+|.|. |++|.++++.|+..|.. +.++|.
T Consensus        32 l~~k~vlITGasggIG~~la~~L~~~G~~-V~~~~r   66 (279)
T 3ctm_A           32 LKGKVASVTGSSGGIGWAVAEAYAQAGAD-VAIWYN   66 (279)
T ss_dssp             CTTCEEEETTTTSSHHHHHHHHHHHHTCE-EEEEES
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeC
Confidence            67788999995 78999999999999975 777765

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=92.02  E-value=0.18  Score=50.57  Aligned_cols=34  Identities=21%  Similarity=0.316  Sum_probs=30.6

Q ss_pred             hcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (324)
Q Consensus        30 ~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d   64 (324)
                      ...+|+|||.|..|...|..|++.|.. ++|+|..
T Consensus       390 ~~~~VvIIGgG~AGl~aA~~La~~G~~-V~liE~~  423 (690)
T 3k30_A          390 SDARVLVVGAGPSGLEAARALGVRGYD-VVLAEAG  423 (690)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHHTCE-EEEECSS
T ss_pred             ccceEEEECCCHHHHHHHHHHHHCCCe-EEEEecC
Confidence            356899999999999999999999985 9999984

>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2

Probab=92.01  E-value=0.49  Score=41.43  Aligned_cols=36  Identities=19%  Similarity=0.146  Sum_probs=28.0

Q ss_pred             HHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCC
Q 020565           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDR   64 (324)
Q Consensus        28 ~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d   64 (324)
                      +-..++|+|.|. |.+|+.+++.|...|. +++.++..
T Consensus         9 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~   45 (292)
T 1vl0_A            9 HHHHMKILITGANGQLGREIQKQLKGKNV-EVIPTDVQ   45 (292)
T ss_dssp             ---CEEEEEESTTSHHHHHHHHHHTTSSE-EEEEECTT
T ss_pred             ccccceEEEECCCChHHHHHHHHHHhCCC-eEEeccCc
Confidence            445678999996 7899999999999995 57777764

>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}

Probab=91.99  E-value=0.17  Score=44.30  Aligned_cols=78  Identities=15%  Similarity=0.245  Sum_probs=47.9

Q ss_pred             hcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeE
Q 020565           30 SKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV  108 (324)
Q Consensus        30 ~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~  108 (324)
                      +.++|+|.|+ ||+|.++++.|+..|.. +.+.+..                     ...+.+.+.+.+.+..+  ++..
T Consensus        25 ~~k~vlITGas~gIG~a~a~~l~~~G~~-V~~~~~~---------------------~~~~~~~~~~~~~~~~~--~~~~   80 (272)
T 4e3z_A           25 DTPVVLVTGGSRGIGAAVCRLAARQGWR-VGVNYAA---------------------NREAADAVVAAITESGG--EAVA   80 (272)
T ss_dssp             CSCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESS---------------------CHHHHHHHHHHHHHTTC--EEEE
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEcCC---------------------ChhHHHHHHHHHHhcCC--cEEE
Confidence            4567888886 78999999999999986 5443220                     33345555666665543  4445


Q ss_pred             eeCCCCCC--chh-------hcCCccEEEEcC
Q 020565          109 EKGDLSSL--DGE-------FYDKFDVVVVSC  131 (324)
Q Consensus       109 ~~~~~~~~--~~~-------~~~~~diVi~~~  131 (324)
                      ...++.+.  ...       .+...|+||.+.
T Consensus        81 ~~~Dl~~~~~v~~~~~~~~~~~g~id~li~nA  112 (272)
T 4e3z_A           81 IPGDVGNAADIAAMFSAVDRQFGRLDGLVNNA  112 (272)
T ss_dssp             EECCTTCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             EEcCCCCHHHHHHHHHHHHHhCCCCCEEEECC
Confidence            55555431  111       123678877664

>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2

Probab=91.99  E-value=0.24  Score=43.69  Aligned_cols=34  Identities=18%  Similarity=0.161  Sum_probs=27.7

Q ss_pred             HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      +++++|+|.|+ |++|.++++.|+..|.. +.+++.
T Consensus        42 l~~k~vlITGasggIG~~la~~L~~~G~~-V~~~~r   76 (285)
T 2c07_A           42 GENKVALVTGAGRGIGREIAKMLAKSVSH-VICISR   76 (285)
T ss_dssp             CSSCEEEEESTTSHHHHHHHHHHTTTSSE-EEEEES
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHcCCE-EEEEcC
Confidence            45678999996 78999999999999964 666553

>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*

Probab=91.97  E-value=0.23  Score=45.40  Aligned_cols=36  Identities=6%  Similarity=-0.078  Sum_probs=25.9

Q ss_pred             HHhcCcEEEEcCchhHH-HHHHHHHHh-CCCcEEEEcC
Q 020565           28 RLSKSHILVCGMKGTVA-EFCKNIVLA-GVGSLTLMDD   63 (324)
Q Consensus        28 ~l~~~~VliiG~g~lGs-ei~k~L~~~-Gv~~i~lvD~   63 (324)
                      .++.-||.|||+|.+|. ..+.+|... |+.-+.++|.
T Consensus        24 ~m~~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~   61 (350)
T 3rc1_A           24 NANPIRVGVIGCADIAWRRALPALEAEPLTEVTAIASR   61 (350)
T ss_dssp             --CCEEEEEESCCHHHHHTHHHHHHHCTTEEEEEEEES
T ss_pred             CCCceEEEEEcCcHHHHHHHHHHHHhCCCeEEEEEEcC
Confidence            45567899999999998 789999887 4443335555

>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A

Probab=91.92  E-value=0.16  Score=44.51  Aligned_cols=41  Identities=20%  Similarity=0.251  Sum_probs=31.4

Q ss_pred             hHHHHHHHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           22 GADAQRRLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        22 g~~~q~~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      |...+..|++++|+|.|. ||+|.++++.|+..|.. +.++|.
T Consensus        18 g~~~m~~l~gk~vlVTGas~gIG~aia~~la~~G~~-V~~~~r   59 (266)
T 3grp_A           18 GPGSMFKLTGRKALVTGATGGIGEAIARCFHAQGAI-VGLHGT   59 (266)
T ss_dssp             ---CTTCCTTCEEEESSTTSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             CCcchhccCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeC
Confidence            444445678899999996 78999999999999974 777664

>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=91.91  E-value=0.33  Score=42.45  Aligned_cols=35  Identities=14%  Similarity=0.232  Sum_probs=29.1

Q ss_pred             HHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        28 ~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      ++++++|+|.|+ ||+|.++++.|+..|.. +.++|.
T Consensus         3 ~~~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r   38 (278)
T 1spx_A            3 RFAEKVAIITGSSNGIGRATAVLFAREGAK-VTITGR   38 (278)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEeC
Confidence            356788999996 78999999999999974 777665

>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2

Probab=91.90  E-value=0.23  Score=43.03  Aligned_cols=37  Identities=19%  Similarity=0.156  Sum_probs=29.0

Q ss_pred             HHHhcCcEEEEcC-chhHHHHHHHHHHhCC--CcEEEEcC
Q 020565           27 RRLSKSHILVCGM-KGTVAEFCKNIVLAGV--GSLTLMDD   63 (324)
Q Consensus        27 ~~l~~~~VliiG~-g~lGsei~k~L~~~Gv--~~i~lvD~   63 (324)
                      ..++.++|+|.|+ |++|.++++.|+..|.  .++.++|.
T Consensus        17 ~~~~~k~vlITGasggIG~~la~~L~~~G~~~~~V~~~~r   56 (267)
T 1sny_A           17 RGSHMNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCR   56 (267)
T ss_dssp             ---CCSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEES
T ss_pred             cCCCCCEEEEECCCCcHHHHHHHHHHhcCCCCcEEEEEec
Confidence            4567788999996 7899999999999994  46888765

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=91.88  E-value=0.28  Score=44.83  Aligned_cols=33  Identities=18%  Similarity=0.171  Sum_probs=29.3

Q ss_pred             cCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      ..+|+|+|+|++|..++..+...|.++++.+|.
T Consensus       172 g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~  204 (356)
T 1pl8_A          172 GHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDL  204 (356)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEES
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECC
Confidence            568999999999999999988999978888775

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=91.85  E-value=0.083  Score=48.38  Aligned_cols=35  Identities=14%  Similarity=0.122  Sum_probs=31.1

Q ss_pred             HHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565           28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        28 ~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      .|..++|.|||+|.+|..+|+.|...|.. +..+|.
T Consensus       162 ~l~g~tvgIIGlG~IG~~vA~~l~~~G~~-V~~~d~  196 (335)
T 2g76_A          162 ELNGKTLGILGLGRIGREVATRMQSFGMK-TIGYDP  196 (335)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTTCE-EEEECS
T ss_pred             CCCcCEEEEEeECHHHHHHHHHHHHCCCE-EEEECC
Confidence            58889999999999999999999999864 777775

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=91.85  E-value=0.46  Score=41.56  Aligned_cols=93  Identities=13%  Similarity=0.179  Sum_probs=57.9

Q ss_pred             HHHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCe
Q 020565           27 RRLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVR  105 (324)
Q Consensus        27 ~~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~  105 (324)
                      ..|+.++|+|.|. ||+|.++++.|+..|.. +.++|.+.-.. ....    ..  -   ...+.+...+.+.+..+  +
T Consensus         9 ~~l~gk~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~~-~~~~----~~--~---~~~~~~~~~~~~~~~~~--~   75 (278)
T 3sx2_A            9 GPLTGKVAFITGAARGQGRAHAVRLAADGAD-IIAVDLCDQIA-SVPY----PL--A---TPEELAATVKLVEDIGS--R   75 (278)
T ss_dssp             CTTTTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEECCSCCT-TCSS----CC--C---CHHHHHHHHHHHHHHTC--C
T ss_pred             CCCCCCEEEEECCCChHHHHHHHHHHHCCCe-EEEEecccccc-cccc----cc--c---chHHHHHHHHHHHhcCC--e
Confidence            3578899999996 78999999999999986 77777531100 0000    00  0   23455666666766664  4


Q ss_pred             EeEeeCCCCCC--chhh-------cCCccEEEEcCC
Q 020565          106 VSVEKGDLSSL--DGEF-------YDKFDVVVVSCC  132 (324)
Q Consensus       106 v~~~~~~~~~~--~~~~-------~~~~diVi~~~~  132 (324)
                      +..+..++.+.  ...+       +...|++|.+..
T Consensus        76 ~~~~~~D~~~~~~v~~~~~~~~~~~g~id~lv~nAg  111 (278)
T 3sx2_A           76 IVARQADVRDRESLSAALQAGLDELGRLDIVVANAG  111 (278)
T ss_dssp             EEEEECCTTCHHHHHHHHHHHHHHHCCCCEEEECCC
T ss_pred             EEEEeCCCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            55555566542  1222       247899987754

>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A*

Probab=91.84  E-value=0.2  Score=43.17  Aligned_cols=34  Identities=15%  Similarity=0.183  Sum_probs=27.4

Q ss_pred             HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      +++++++|.|. ||+|.++++.|+..|.. +.++|.
T Consensus         2 l~~k~~lVTGas~gIG~~ia~~l~~~G~~-V~~~~~   36 (246)
T 3osu_A            2 KMTKSALVTGASRGIGRSIALQLAEEGYN-VAVNYA   36 (246)
T ss_dssp             CCSCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCE-EEEEeC
Confidence            35678999996 78999999999999976 555544

>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}

Probab=91.84  E-value=0.3  Score=44.47  Aligned_cols=32  Identities=16%  Similarity=0.081  Sum_probs=24.0

Q ss_pred             CcEEEEcCchhHHHHHHHHHHh-CCCcEEEEcC
Q 020565           32 SHILVCGMKGTVAEFCKNIVLA-GVGSLTLMDD   63 (324)
Q Consensus        32 ~~VliiG~g~lGsei~k~L~~~-Gv~~i~lvD~   63 (324)
                      -||.|||+|.+|...+++|... |+.-+.++|.
T Consensus         3 ~rvgiIG~G~~g~~~~~~l~~~~~~~l~av~d~   35 (344)
T 3ezy_A            3 LRIGVIGLGRIGTIHAENLKMIDDAILYAISDV   35 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHGGGSTTEEEEEEECS
T ss_pred             eEEEEEcCCHHHHHHHHHHHhCCCcEEEEEECC
Confidence            4799999999999999999874 4432335554

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=91.82  E-value=0.17  Score=42.92  Aligned_cols=32  Identities=9%  Similarity=0.163  Sum_probs=27.8

Q ss_pred             cCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      ..+|.|||+|.+|..+++.|+..|. +++++|.
T Consensus        28 ~~~I~iiG~G~~G~~la~~l~~~g~-~V~~~~r   59 (215)
T 2vns_A           28 APKVGILGSGDFARSLATRLVGSGF-KVVVGSR   59 (215)
T ss_dssp             -CCEEEECCSHHHHHHHHHHHHTTC-CEEEEES
T ss_pred             CCEEEEEccCHHHHHHHHHHHHCCC-EEEEEeC
Confidence            4689999999999999999999997 4777765

>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}

Probab=91.80  E-value=0.38  Score=42.57  Aligned_cols=96  Identities=10%  Similarity=0.023  Sum_probs=55.8

Q ss_pred             hcCcEEEEc-CchhHHHHHHHHHHh-CCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEe
Q 020565           30 SKSHILVCG-MKGTVAEFCKNIVLA-GVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS  107 (324)
Q Consensus        30 ~~~~VliiG-~g~lGsei~k~L~~~-Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~  107 (324)
                      +.-||.|+| +|.+|.++++.+... ++.=+-++|...-..         .-.|+   |.    .     ..+.+.+.  
T Consensus         6 ~mikV~V~Ga~G~MG~~i~~~l~~~~~~eLv~~~d~~~~~~---------~G~d~---ge----l-----~g~~~gv~--   62 (272)
T 4f3y_A            6 SSMKIAIAGASGRMGRMLIEAVLAAPDATLVGALDRTGSPQ---------LGQDA---GA----F-----LGKQTGVA--   62 (272)
T ss_dssp             CCEEEEESSTTSHHHHHHHHHHHHCTTEEEEEEBCCTTCTT---------TTSBT---TT----T-----TTCCCSCB--
T ss_pred             cccEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEEecCccc---------ccccH---HH----H-----hCCCCCce--
Confidence            346899999 799999999999865 332222345421100         01122   21    0     11122221  


Q ss_pred             EeeCCCCCCchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEe
Q 020565          108 VEKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTV  156 (324)
Q Consensus       108 ~~~~~~~~~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~  156 (324)
                           +....++.+.++|+||+++. ++.....-+.|.+  +++|++.+
T Consensus        63 -----v~~dl~~ll~~~DVVIDfT~-p~a~~~~~~~al~--~G~~vVig  103 (272)
T 4f3y_A           63 -----LTDDIERVCAEADYLIDFTL-PEGTLVHLDAALR--HDVKLVIG  103 (272)
T ss_dssp             -----CBCCHHHHHHHCSEEEECSC-HHHHHHHHHHHHH--HTCEEEEC
T ss_pred             -----ecCCHHHHhcCCCEEEEcCC-HHHHHHHHHHHHH--cCCCEEEE
Confidence                 12233555668999999984 5555566678888  89998853

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=91.79  E-value=1.6  Score=36.99  Aligned_cols=96  Identities=13%  Similarity=0.085  Sum_probs=54.0

Q ss_pred             hcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEe
Q 020565           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVE  109 (324)
Q Consensus        30 ~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~  109 (324)
                      ...+|+.+||| .|.-....+.+  ..+++.+|.                      .....+.+++.+....-.-+++..
T Consensus        91 ~~~~vldiG~G-~G~~~~~l~~~--~~~v~~vD~----------------------~~~~~~~a~~~~~~~~~~~~~~~~  145 (248)
T 2yvl_A           91 KEKRVLEFGTG-SGALLAVLSEV--AGEVWTFEA----------------------VEEFYKTAQKNLKKFNLGKNVKFF  145 (248)
T ss_dssp             TTCEEEEECCT-TSHHHHHHHHH--SSEEEEECS----------------------CHHHHHHHHHHHHHTTCCTTEEEE
T ss_pred             CCCEEEEeCCC-ccHHHHHHHHh--CCEEEEEec----------------------CHHHHHHHHHHHHHcCCCCcEEEE
Confidence            45789999998 56655544333  456777765                      444556666666654422234444


Q ss_pred             eCCCCCCc-hhhcCCccEEEEcCCCH-HHHHHHHHHHHhccCCccEE
Q 020565          110 KGDLSSLD-GEFYDKFDVVVVSCCSV-TTKKLINEKCRKLSKRVAFY  154 (324)
Q Consensus       110 ~~~~~~~~-~~~~~~~diVi~~~~~~-~~~~~l~~~~~~~~~~ip~i  154 (324)
                      ..++.+.. .  -..||+|+....++ .....+.+..+.  .+.-++
T Consensus       146 ~~d~~~~~~~--~~~~D~v~~~~~~~~~~l~~~~~~L~~--gG~l~~  188 (248)
T 2yvl_A          146 NVDFKDAEVP--EGIFHAAFVDVREPWHYLEKVHKSLME--GAPVGF  188 (248)
T ss_dssp             CSCTTTSCCC--TTCBSEEEECSSCGGGGHHHHHHHBCT--TCEEEE
T ss_pred             EcChhhcccC--CCcccEEEECCcCHHHHHHHHHHHcCC--CCEEEE
Confidence            44443321 1  13699999876554 444444444444  444333

>1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A

Probab=91.76  E-value=0.2  Score=42.91  Aligned_cols=35  Identities=17%  Similarity=0.250  Sum_probs=29.5

Q ss_pred             HHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        28 ~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      .+++++|+|.|+ |++|.++++.|+..|.. ++++|.
T Consensus         3 ~~~~k~vlVtGasggiG~~~a~~l~~~G~~-V~~~~r   38 (251)
T 1zk4_A            3 RLDGKVAIITGGTLGIGLAIATKFVEEGAK-VMITGR   38 (251)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             CCCCcEEEEeCCCChHHHHHHHHHHHCCCE-EEEEeC
Confidence            367788999996 78999999999999975 777765

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=91.73  E-value=0.33  Score=44.64  Aligned_cols=33  Identities=18%  Similarity=0.110  Sum_probs=29.1

Q ss_pred             cCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      ..+|+|+|+|++|..++..+...|..+++.+|.
T Consensus       192 g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~  224 (373)
T 1p0f_A          192 GSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGT  224 (373)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTCSEEEEECS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCeEEEECC
Confidence            468999999999999999988999977888765

>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}

Probab=91.72  E-value=0.29  Score=43.05  Aligned_cols=37  Identities=22%  Similarity=0.293  Sum_probs=27.9

Q ss_pred             HHHHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           26 QRRLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        26 q~~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      +..+.+++++|.|. ||+|.++++.|+..|.. +.++|.
T Consensus        23 m~~~~~k~~lVTGas~GIG~aia~~la~~G~~-V~~~~r   60 (272)
T 4dyv_A           23 MSKTGKKIAIVTGAGSGVGRAVAVALAGAGYG-VALAGR   60 (272)
T ss_dssp             -----CCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             hcCCCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEEC
Confidence            34577888999996 78999999999999985 777765

>5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A*

Probab=91.71  E-value=0.22  Score=45.56  Aligned_cols=77  Identities=19%  Similarity=0.248  Sum_probs=53.3

Q ss_pred             CcEEEEc-CchhHHHHHHHHHHhCC-Cc-----EEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhC-CC
Q 020565           32 SHILVCG-MKGTVAEFCKNIVLAGV-GS-----LTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFN-PM  103 (324)
Q Consensus        32 ~~VliiG-~g~lGsei~k~L~~~Gv-~~-----i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~ln-p~  103 (324)
                      .||+|+| +|.+|+.++..|+..|+ ++     +.|+|-..                    .+.|++..+--|+... |.
T Consensus         4 ~kV~V~GaaG~VG~~la~~L~~~~~~~e~~~~~l~L~Di~~--------------------~~~~~~g~a~DL~~~~~~~   63 (333)
T 5mdh_A            4 IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITP--------------------MMGVLDGVLMELQDCALPL   63 (333)
T ss_dssp             EEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGG--------------------GHHHHHHHHHHHHHTCCTT
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCCccccCCCEEEEEeCCC--------------------ccccchhhHhhhHhhhhcc
Confidence            4799999 79999999999999987 45     88888721                    2346666677777753 54


Q ss_pred             CeEeEeeCCCCCCchhhcCCccEEEEcCC
Q 020565          104 VRVSVEKGDLSSLDGEFYDKFDVVVVSCC  132 (324)
Q Consensus       104 v~v~~~~~~~~~~~~~~~~~~diVi~~~~  132 (324)
                      +. ..   .......+.++++|+||.+..
T Consensus        64 ~~-~~---~~~~~~~~~~~daDvVvitAg   88 (333)
T 5mdh_A           64 LK-DV---IATDKEEIAFKDLDVAILVGS   88 (333)
T ss_dssp             EE-EE---EEESCHHHHTTTCSEEEECCS
T ss_pred             cC-CE---EEcCCcHHHhCCCCEEEEeCC
Confidence            31 11   111233556889999998764

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=91.71  E-value=0.18  Score=45.77  Aligned_cols=32  Identities=13%  Similarity=0.168  Sum_probs=27.9

Q ss_pred             cCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      ..+|+|+|+|++|..++..+...|. +++.+|.
T Consensus       165 g~~VlV~GaG~vG~~~~~~a~~~Ga-~Vi~~~~  196 (339)
T 1rjw_A          165 GEWVAIYGIGGLGHVAVQYAKAMGL-NVVAVDI  196 (339)
T ss_dssp             TCEEEEECCSTTHHHHHHHHHHTTC-EEEEECS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCC-EEEEEeC
Confidence            5689999999999999999999998 6777764

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=91.70  E-value=0.79  Score=41.45  Aligned_cols=31  Identities=26%  Similarity=0.330  Sum_probs=28.0

Q ss_pred             CcEEEEcCchhHHH-HHHHHHHhCCCcEEEEcC
Q 020565           32 SHILVCGMKGTVAE-FCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        32 ~~VliiG~g~lGse-i~k~L~~~Gv~~i~lvD~   63 (324)
                      ++|.|||.|+.|.. +|+.|...|.. +++.|.
T Consensus         5 ~~i~~iGiGg~Gms~~A~~L~~~G~~-V~~~D~   36 (326)
T 3eag_A            5 KHIHIIGIGGTFMGGLAAIAKEAGFE-VSGCDA   36 (326)
T ss_dssp             CEEEEESCCSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             cEEEEEEECHHHHHHHHHHHHhCCCE-EEEEcC
Confidence            58999999999996 99999999986 888887

>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}

Probab=91.68  E-value=0.37  Score=42.18  Aligned_cols=32  Identities=16%  Similarity=0.274  Sum_probs=25.8

Q ss_pred             HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEE
Q 020565           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLM   61 (324)
Q Consensus        29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lv   61 (324)
                      +++++++|.|. ||+|.++++.|+..|.. +.+.
T Consensus        25 ~~~k~~lVTGas~GIG~aia~~la~~G~~-Vv~~   57 (267)
T 3u5t_A           25 ETNKVAIVTGASRGIGAAIAARLASDGFT-VVIN   57 (267)
T ss_dssp             --CCEEEEESCSSHHHHHHHHHHHHHTCE-EEEE
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEE
Confidence            56788999996 78999999999999986 5554

>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*

Probab=91.67  E-value=0.22  Score=43.21  Aligned_cols=34  Identities=18%  Similarity=0.206  Sum_probs=28.3

Q ss_pred             HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      |++++|+|.|. ||+|.++++.|+..|.. +.++|.
T Consensus         2 l~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r   36 (260)
T 1x1t_A            2 LKGKVAVVTGSTSGIGLGIATALAAQGAD-IVLNGF   36 (260)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCE-EEEECC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHcCCE-EEEEeC
Confidence            45678999985 78999999999999975 777665

>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}

Probab=91.67  E-value=0.24  Score=43.83  Aligned_cols=36  Identities=11%  Similarity=0.254  Sum_probs=30.6

Q ss_pred             HHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCC
Q 020565           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDR   64 (324)
Q Consensus        28 ~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d   64 (324)
                      .|++++|+|.|+ ||+|.++++.|+..|.. +.++|.+
T Consensus        13 ~l~gk~vlVTGas~gIG~~~a~~L~~~G~~-V~~~~r~   49 (291)
T 3rd5_A           13 SFAQRTVVITGANSGLGAVTARELARRGAT-VIMAVRD   49 (291)
T ss_dssp             CCTTCEEEEECCSSHHHHHHHHHHHHTTCE-EEEEESC
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHCCCE-EEEEECC
Confidence            467889999996 78999999999999974 8887763

>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}

Probab=91.64  E-value=0.28  Score=43.37  Aligned_cols=85  Identities=12%  Similarity=0.198  Sum_probs=53.2

Q ss_pred             HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEe
Q 020565           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS  107 (324)
Q Consensus        29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~  107 (324)
                      |++++++|.|+ +|+|.++++.|+..|. ++.++|.+.-....+               +.+.+.+.+.+++..+  ++.
T Consensus         7 l~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~---------------~~~~~~~~~~~~~~~~--~~~   68 (285)
T 3sc4_A            7 LRGKTMFISGGSRGIGLAIAKRVAADGA-NVALVAKSAEPHPKL---------------PGTIYTAAKEIEEAGG--QAL   68 (285)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHTTTC-EEEEEESCCSCCSSS---------------CCCHHHHHHHHHHHTS--EEE
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECChhhhhhh---------------hHHHHHHHHHHHhcCC--cEE
Confidence            67789999996 7899999999999998 488887643222111               1133444555665554  455


Q ss_pred             EeeCCCCCC--chhh-------cCCccEEEEcC
Q 020565          108 VEKGDLSSL--DGEF-------YDKFDVVVVSC  131 (324)
Q Consensus       108 ~~~~~~~~~--~~~~-------~~~~diVi~~~  131 (324)
                      .+..++++.  ...+       +...|++|.+.
T Consensus        69 ~~~~Dv~~~~~v~~~~~~~~~~~g~id~lvnnA  101 (285)
T 3sc4_A           69 PIVGDIRDGDAVAAAVAKTVEQFGGIDICVNNA  101 (285)
T ss_dssp             EEECCTTSHHHHHHHHHHHHHHHSCCSEEEECC
T ss_pred             EEECCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            555555531  1112       23678888664

>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa}

Probab=91.64  E-value=0.32  Score=42.79  Aligned_cols=35  Identities=23%  Similarity=0.352  Sum_probs=27.2

Q ss_pred             HHHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           27 RRLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        27 ~~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      ..|+ ++++|.|. ||+|.++++.|+..|.. +.++|.
T Consensus        18 ~~~~-k~vlVTGas~gIG~aia~~La~~G~~-V~~~~r   53 (272)
T 2nwq_A           18 SHMS-STLFITGATSGFGEACARRFAEAGWS-LVLTGR   53 (272)
T ss_dssp             ---C-CEEEESSTTTSSHHHHHHHHHHTTCE-EEEEES
T ss_pred             CCcC-cEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEEC
Confidence            4455 78999996 68999999999999975 777665

>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A*

Probab=91.61  E-value=0.17  Score=44.15  Aligned_cols=31  Identities=16%  Similarity=0.241  Sum_probs=25.6

Q ss_pred             hcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEE
Q 020565           30 SKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLM   61 (324)
Q Consensus        30 ~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lv   61 (324)
                      ++++|+|.|. ||+|.++++.|+..|.. +.+.
T Consensus         3 ~~k~vlVTGas~gIG~aia~~l~~~G~~-vv~~   34 (258)
T 3oid_A            3 QNKCALVTGSSRGVGKAAAIRLAENGYN-IVIN   34 (258)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHTTCE-EEEE
T ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCE-EEEE
Confidence            4678899996 78999999999999986 5553

>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=91.60  E-value=0.21  Score=44.59  Aligned_cols=34  Identities=15%  Similarity=0.242  Sum_probs=28.8

Q ss_pred             HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      +++++++|.|. ||+|.++++.|+..|.. +.++|.
T Consensus        24 l~~k~vlVTGas~gIG~aia~~L~~~G~~-V~~~~r   58 (297)
T 1xhl_A           24 FSGKSVIITGSSNGIGRSAAVIFAKEGAQ-VTITGR   58 (297)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeC
Confidence            56788999996 78999999999999975 777665

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=91.59  E-value=0.18  Score=47.16  Aligned_cols=37  Identities=19%  Similarity=0.230  Sum_probs=33.0

Q ss_pred             cCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccc
Q 020565           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVT   67 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~   67 (324)
                      ...|+|||.|..|..+|..|++.|..+++|+|....-
T Consensus         6 ~~dVvIIGgG~aGlsaA~~La~~G~~~V~vlE~~~~~   42 (438)
T 3dje_A            6 SSSLLIVGAGTWGTSTALHLARRGYTNVTVLDPYPVP   42 (438)
T ss_dssp             TSCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSCSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCCcEEEEeCCCCC
Confidence            4679999999999999999999998679999987653

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=91.59  E-value=0.4  Score=44.08  Aligned_cols=33  Identities=21%  Similarity=0.158  Sum_probs=29.2

Q ss_pred             cCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      ..+|+|+|+|++|..++..+...|.++++.+|.
T Consensus       192 g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~  224 (374)
T 2jhf_A          192 GSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDI  224 (374)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcC
Confidence            468999999999999999999999977888765

>1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A*

Probab=91.57  E-value=1  Score=40.38  Aligned_cols=106  Identities=20%  Similarity=0.241  Sum_probs=63.6

Q ss_pred             CcEEEEcC-chhHHHHHHHHHHhCC-CcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEe
Q 020565           32 SHILVCGM-KGTVAEFCKNIVLAGV-GSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVE  109 (324)
Q Consensus        32 ~~VliiG~-g~lGsei~k~L~~~Gv-~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~  109 (324)
                      .+|+|.|+ |.+|+.+++.|+..|- .+++++|...-.                  +..      +.+.++.+ -.++..
T Consensus         5 ~~vlVTGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~------------------~~~------~~~~~~~~-~~~~~~   59 (348)
T 1oc2_A            5 KNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYA------------------GNK------ANLEAILG-DRVELV   59 (348)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTT------------------CCG------GGTGGGCS-SSEEEE
T ss_pred             cEEEEeCCccHHHHHHHHHHHHhCCCCEEEEEeCCCCC------------------CCh------hHHhhhcc-CCeEEE
Confidence            47999995 8899999999999942 257777653210                  000      00111111 234455


Q ss_pred             eCCCCCC--chhhcCCccEEEEcCCCH---------H--------HHHHHHHHHHhccCCccEEEeeecCceEE
Q 020565          110 KGDLSSL--DGEFYDKFDVVVVSCCSV---------T--------TKKLINEKCRKLSKRVAFYTVDCRDSCGE  164 (324)
Q Consensus       110 ~~~~~~~--~~~~~~~~diVi~~~~~~---------~--------~~~~l~~~~~~~~~~ip~i~~~~~G~~g~  164 (324)
                      ..++.+.  ....++++|+||.+....         .        ....+-+.|++  .++.+|++++.+.+|.
T Consensus        60 ~~Dl~d~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~--~~~~~v~~SS~~vyg~  131 (348)
T 1oc2_A           60 VGDIADAELVDKLAAKADAIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARK--YDIRFHHVSTDEVYGD  131 (348)
T ss_dssp             ECCTTCHHHHHHHHTTCSEEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHH--HTCEEEEEEEGGGGCC
T ss_pred             ECCCCCHHHHHHHhhcCCEEEECCcccCccchhhCHHHHHHHHHHHHHHHHHHHHH--hCCeEEEecccceeCC
Confidence            5555542  345677889999876421         1        12345567777  5568888888776663

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}

Probab=91.56  E-value=0.065  Score=49.47  Aligned_cols=36  Identities=11%  Similarity=0.015  Sum_probs=32.0

Q ss_pred             HHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565           27 RRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        27 ~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      ..|..++|.|||+|.+|..+|+.|...|.. +..+|.
T Consensus       156 ~~l~g~tvGIIGlG~IG~~vA~~l~~~G~~-V~~~d~  191 (352)
T 3gg9_A          156 RVLKGQTLGIFGYGKIGQLVAGYGRAFGMN-VLVWGR  191 (352)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCE-EEEECS
T ss_pred             ccCCCCEEEEEeECHHHHHHHHHHHhCCCE-EEEECC
Confidence            468899999999999999999999999974 777775

>2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6

Probab=91.55  E-value=0.086  Score=46.63  Aligned_cols=22  Identities=9%  Similarity=-0.070  Sum_probs=18.2

Q ss_pred             CcEEEEcCchhHHHHHHHHHHh
Q 020565           32 SHILVCGMKGTVAEFCKNIVLA   53 (324)
Q Consensus        32 ~~VliiG~g~lGsei~k~L~~~   53 (324)
                      .+|.|||+|.+|..+++.|+..
T Consensus         3 m~I~iIG~G~mG~~la~~l~~~   24 (276)
T 2i76_A            3 LVLNFVGTGTLTRFFLECLKDR   24 (276)
T ss_dssp             -CCEEESCCHHHHHHHHTTC--
T ss_pred             ceEEEEeCCHHHHHHHHHHHHc
Confidence            3799999999999999999876

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=91.53  E-value=0.18  Score=46.46  Aligned_cols=33  Identities=12%  Similarity=0.071  Sum_probs=28.8

Q ss_pred             cCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      ..+|+|+|+|++|..++..+...|..+++.+|.
T Consensus       191 g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~  223 (371)
T 1f8f_A          191 ASSFVTWGAGAVGLSALLAAKVCGASIIIAVDI  223 (371)
T ss_dssp             TCEEEEESCSHHHHHHHHHHHHHTCSEEEEEES
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCeEEEECC
Confidence            468999999999999999988899987887765

>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0

Probab=91.51  E-value=0.38  Score=42.12  Aligned_cols=36  Identities=22%  Similarity=0.280  Sum_probs=30.8

Q ss_pred             HHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCC
Q 020565           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDR   64 (324)
Q Consensus        28 ~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d   64 (324)
                      .|+.++++|.|. ||+|.++++.|+..|.. +.++|.+
T Consensus         8 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~-V~~~~r~   44 (271)
T 3tzq_B            8 ELENKVAIITGACGGIGLETSRVLARAGAR-VVLADLP   44 (271)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEECT
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEcCC
Confidence            467889999996 78999999999999975 8887763

>2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A*

Probab=91.48  E-value=0.57  Score=39.96  Aligned_cols=86  Identities=12%  Similarity=0.049  Sum_probs=48.7

Q ss_pred             cCcEEEEcCchhHHHHHHH--HHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeE
Q 020565           31 KSHILVCGMKGTVAEFCKN--IVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV  108 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~--L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~  108 (324)
                      ..+|+|+|+|.+|..+++.  ....|+.-+-++|.|.-..                 |+.           +. .+.+..
T Consensus        85 ~~rV~IIGAG~~G~~La~~~~~~~~g~~iVg~~D~dp~k~-----------------g~~-----------i~-gv~V~~  135 (215)
T 2vt3_A           85 MTDVILIGVGNLGTAFLHYNFTKNNNTKISMAFDINESKI-----------------GTE-----------VG-GVPVYN  135 (215)
T ss_dssp             --CEEEECCSHHHHHHHHCC------CCEEEEEESCTTTT-----------------TCE-----------ET-TEEEEE
T ss_pred             CCEEEEEccCHHHHHHHHHHhcccCCcEEEEEEeCCHHHH-----------------HhH-----------hc-CCeeec
Confidence            3589999999999999994  3455777677788743221                 210           00 122222


Q ss_pred             eeCCCCCCchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccE
Q 020565          109 EKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAF  153 (324)
Q Consensus       109 ~~~~~~~~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~  153 (324)
                          . +...++++..|+|+.|+-+... ..+-+.|.+  .++.-
T Consensus       136 ----~-~dl~eli~~~D~ViIAvPs~~~-~ei~~~l~~--aGi~~  172 (215)
T 2vt3_A          136 ----L-DDLEQHVKDESVAILTVPAVAA-QSITDRLVA--LGIKG  172 (215)
T ss_dssp             ----G-GGHHHHCSSCCEEEECSCHHHH-HHHHHHHHH--TTCCE
T ss_pred             ----h-hhHHHHHHhCCEEEEecCchhH-HHHHHHHHH--cCCCE
Confidence                1 1234555455999998876543 366677777  66543

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=91.47  E-value=0.15  Score=47.30  Aligned_cols=40  Identities=8%  Similarity=-0.028  Sum_probs=31.5

Q ss_pred             HHHHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCc
Q 020565           25 AQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV   65 (324)
Q Consensus        25 ~q~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~   65 (324)
                      ..+..+..+|+|||+|..|..+|..|++.|+. ++|+|.+.
T Consensus        17 ~~~~~~~~dV~IVGaG~aGl~~A~~La~~G~~-V~v~E~~~   56 (407)
T 3rp8_A           17 NLYFQGHMKAIVIGAGIGGLSAAVALKQSGID-CDVYEAVK   56 (407)
T ss_dssp             ------CCEEEEECCSHHHHHHHHHHHHTTCE-EEEEESSS
T ss_pred             cccCCCCCEEEEECCCHHHHHHHHHHHhCCCC-EEEEeCCC
Confidence            34556678999999999999999999999995 99999864

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}

Probab=91.46  E-value=0.36  Score=42.61  Aligned_cols=37  Identities=14%  Similarity=0.153  Sum_probs=27.3

Q ss_pred             HHHHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           26 QRRLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        26 q~~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      ...+++++++|.|. ||+|.++++.|+..|.. +.++|.
T Consensus        28 ~~~l~gk~~lVTGas~GIG~aia~~la~~G~~-V~~~~r   65 (281)
T 4dry_A           28 KGSGEGRIALVTGGGTGVGRGIAQALSAEGYS-VVITGR   65 (281)
T ss_dssp             ------CEEEETTTTSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             CCCCCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEEC
Confidence            34578899999996 78999999999999985 777665

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=91.45  E-value=0.35  Score=49.01  Aligned_cols=32  Identities=13%  Similarity=0.200  Sum_probs=29.4

Q ss_pred             CcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (324)
Q Consensus        32 ~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d   64 (324)
                      ++|.|||+|..|+-||..++.+|+. ++++|.+
T Consensus       317 ~~v~ViGaG~MG~gIA~~~a~aG~~-V~l~D~~  348 (742)
T 3zwc_A          317 SSVGVLGLGTMGRGIAISFARVGIS-VVAVESD  348 (742)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCE-EEEECSS
T ss_pred             cEEEEEcccHHHHHHHHHHHhCCCc-hhcccch
Confidence            4899999999999999999999997 8898874

>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}

Probab=91.45  E-value=0.44  Score=43.07  Aligned_cols=34  Identities=9%  Similarity=0.041  Sum_probs=25.5

Q ss_pred             hcCcEEEEcCchhHHHHHHHHHHh-CCCcEEEEcC
Q 020565           30 SKSHILVCGMKGTVAEFCKNIVLA-GVGSLTLMDD   63 (324)
Q Consensus        30 ~~~~VliiG~g~lGsei~k~L~~~-Gv~~i~lvD~   63 (324)
                      +.-+|.|||+|.+|...++.|... |+.-+.++|.
T Consensus         4 ~~~~igiiG~G~~g~~~~~~l~~~~~~~l~av~d~   38 (330)
T 3e9m_A            4 DKIRYGIMSTAQIVPRFVAGLRESAQAEVRGIASR   38 (330)
T ss_dssp             CCEEEEECSCCTTHHHHHHHHHHSSSEEEEEEBCS
T ss_pred             CeEEEEEECchHHHHHHHHHHHhCCCcEEEEEEeC
Confidence            345899999999999999999885 4432335555

>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*

Probab=91.39  E-value=0.35  Score=42.83  Aligned_cols=35  Identities=17%  Similarity=0.137  Sum_probs=27.9

Q ss_pred             HHHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEc
Q 020565           27 RRLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMD   62 (324)
Q Consensus        27 ~~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD   62 (324)
                      ..|+.++++|.|. ||+|.++++.|+..|.. +.++|
T Consensus         5 ~~l~~k~~lVTGas~GIG~aia~~la~~G~~-V~~~~   40 (291)
T 1e7w_A            5 TAPTVPVALVTGAAKRLGRSIAEGLHAEGYA-VCLHY   40 (291)
T ss_dssp             ---CCCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEE
T ss_pred             cCCCCCEEEEECCCchHHHHHHHHHHHCCCe-EEEEc
Confidence            4577888999985 78999999999999975 77766

>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=91.39  E-value=0.26  Score=43.04  Aligned_cols=34  Identities=21%  Similarity=0.242  Sum_probs=27.2

Q ss_pred             HHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEc
Q 020565           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMD   62 (324)
Q Consensus        28 ~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD   62 (324)
                      .+++++++|.|+ ||+|.++++.|+..|.. +.++|
T Consensus        22 ~~~~k~vlITGas~gIG~~~a~~l~~~G~~-v~~~~   56 (269)
T 3gk3_A           22 MQAKRVAFVTGGMGGLGAAISRRLHDAGMA-VAVSH   56 (269)
T ss_dssp             --CCCEEEETTTTSHHHHHHHHHHHTTTCE-EEEEE
T ss_pred             hhcCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEc
Confidence            356778899896 78999999999999986 66665

>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=91.38  E-value=0.31  Score=43.64  Aligned_cols=36  Identities=17%  Similarity=0.108  Sum_probs=27.2

Q ss_pred             HHHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           27 RRLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        27 ~~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      .+-.+.+|||.|. |.+|+.+++.|...|. +++++|.
T Consensus        10 ~~~~~~~vlVTGatG~iG~~l~~~L~~~g~-~V~~~~r   46 (335)
T 1rpn_A           10 HGSMTRSALVTGITGQDGAYLAKLLLEKGY-RVHGLVA   46 (335)
T ss_dssp             -----CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEEC
T ss_pred             ccccCCeEEEECCCChHHHHHHHHHHHCCC-eEEEEeC
Confidence            3457889999996 8899999999999996 5777765

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=91.37  E-value=0.15  Score=47.37  Aligned_cols=35  Identities=14%  Similarity=0.162  Sum_probs=32.2

Q ss_pred             HHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565           28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        28 ~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      .+..++|+|+|+|++|..+++.+...|. +++++|.
T Consensus       165 ~l~g~~V~ViG~G~iG~~~a~~a~~~Ga-~V~~~d~  199 (377)
T 2vhw_A          165 GVEPADVVVIGAGTAGYNAARIANGMGA-TVTVLDI  199 (377)
T ss_dssp             TBCCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeC
Confidence            4788999999999999999999999998 6888876

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=91.36  E-value=0.21  Score=45.67  Aligned_cols=36  Identities=22%  Similarity=0.314  Sum_probs=32.2

Q ss_pred             cCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccc
Q 020565           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVT   67 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~   67 (324)
                      ...|+|||.|..|+.+|..|++.|.. ++|+|...+.
T Consensus         5 ~~dVvIIGgGi~Gl~~A~~La~~G~~-V~lle~~~~~   40 (382)
T 1y56_B            5 KSEIVVIGGGIVGVTIAHELAKRGEE-VTVIEKRFIG   40 (382)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHTTCC-EEEECSSSTT
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCe-EEEEeCCCCC
Confidence            56899999999999999999999986 9999987543

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=91.35  E-value=0.21  Score=45.28  Aligned_cols=33  Identities=12%  Similarity=0.195  Sum_probs=28.2

Q ss_pred             hcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        30 ~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      ...+|+|+|+|++|..++..+...|. +++.+|.
T Consensus       166 ~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~  198 (340)
T 3s2e_A          166 PGQWVVISGIGGLGHVAVQYARAMGL-RVAAVDI  198 (340)
T ss_dssp             TTSEEEEECCSTTHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEeC
Confidence            45689999999999999999999998 5777655

>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A*

Probab=91.34  E-value=1.1  Score=42.41  Aligned_cols=83  Identities=14%  Similarity=0.041  Sum_probs=47.7

Q ss_pred             HHHhcCcEEEEcCchhHHHHHHHHHHh-CCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhC-CCC
Q 020565           27 RRLSKSHILVCGMKGTVAEFCKNIVLA-GVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFN-PMV  104 (324)
Q Consensus        27 ~~l~~~~VliiG~g~lGsei~k~L~~~-Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~ln-p~v  104 (324)
                      ..++.-||.|||+|.+|...+.+|... |+.-+.++|.                      ...|++.+++.+.+.. |.+
T Consensus        16 ~~~~~~rvgiIG~G~~g~~h~~~l~~~~~~~lvav~d~----------------------~~~~~~~~a~~~~~~g~~~~   73 (444)
T 2ixa_A           16 FNPKKVRIAFIAVGLRGQTHVENMARRDDVEIVAFADP----------------------DPYMVGRAQEILKKNGKKPA   73 (444)
T ss_dssp             ---CCEEEEEECCSHHHHHHHHHHHTCTTEEEEEEECS----------------------CHHHHHHHHHHHHHTTCCCC
T ss_pred             CCCCCceEEEEecCHHHHHHHHHHHhCCCcEEEEEEeC----------------------CHHHHHHHHHHHHhcCCCCC
Confidence            345567899999999999999988864 4332334443                      4456666666665443 222


Q ss_pred             eEeEeeCCCCCCchhhcC--CccEEEEcCCCH
Q 020565          105 RVSVEKGDLSSLDGEFYD--KFDVVVVSCCSV  134 (324)
Q Consensus       105 ~v~~~~~~~~~~~~~~~~--~~diVi~~~~~~  134 (324)
                      .  .+... ....+++++  +.|+|++|+-+.
T Consensus        74 ~--~~~~~-~~~~~~ll~~~~vD~V~i~tp~~  102 (444)
T 2ixa_A           74 K--VFGNG-NDDYKNMLKDKNIDAVFVSSPWE  102 (444)
T ss_dssp             E--EECSS-TTTHHHHTTCTTCCEEEECCCGG
T ss_pred             c--eeccC-CCCHHHHhcCCCCCEEEEcCCcH
Confidence            2  22210 012244454  578888877643

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=91.31  E-value=0.77  Score=43.43  Aligned_cols=44  Identities=16%  Similarity=0.020  Sum_probs=34.6

Q ss_pred             HhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCC
Q 020565           29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSA   73 (324)
Q Consensus        29 l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r   73 (324)
                      -..++..|||+|.+|..+|.+|+..|.. ++.+|.+.-..+.+++
T Consensus         9 ~~~~~~~ViGlGyvGlp~A~~La~~G~~-V~~~D~~~~kv~~L~~   52 (431)
T 3ojo_A            9 HHGSKLTVVGLGYIGLPTSIMFAKHGVD-VLGVDINQQTIDKLQN   52 (431)
T ss_dssp             ---CEEEEECCSTTHHHHHHHHHHTTCE-EEEECSCHHHHHHHHT
T ss_pred             ccCCccEEEeeCHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHC
Confidence            3568899999999999999999999975 8999887655555544

>1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A*

Probab=91.30  E-value=0.82  Score=40.48  Aligned_cols=33  Identities=9%  Similarity=0.141  Sum_probs=26.7

Q ss_pred             hcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           30 SKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        30 ~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      +..+|+|.|+ |.+|+.+++.|...|.. +++++.
T Consensus         2 ~~~~ilVtGatG~iG~~l~~~L~~~g~~-v~~~~r   35 (321)
T 1e6u_A            2 AKQRVFIAGHRGMVGSAIRRQLEQRGDV-ELVLRT   35 (321)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHTTCTTE-EEECCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHhCCCe-EEEEec
Confidence            3468999995 88999999999999864 666654

>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens}

Probab=91.27  E-value=0.68  Score=41.50  Aligned_cols=36  Identities=22%  Similarity=0.286  Sum_probs=29.0

Q ss_pred             HhcCcEEEEc-CchhHHHHHHHHHHhCC------CcEEEEcCC
Q 020565           29 LSKSHILVCG-MKGTVAEFCKNIVLAGV------GSLTLMDDR   64 (324)
Q Consensus        29 l~~~~VliiG-~g~lGsei~k~L~~~Gv------~~i~lvD~d   64 (324)
                      ++..+|+|.| .|.+|+.+++.|+..|.      .+++++|..
T Consensus        12 ~~~~~vlVtGa~G~iG~~l~~~L~~~g~~~~r~~~~V~~~~r~   54 (342)
T 2hrz_A           12 FQGMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVF   54 (342)
T ss_dssp             CSCEEEEEETTTSHHHHHHHHHHHHHCEETTEEEEEEEEEESS
T ss_pred             ccCCEEEEECCCcHHHHHHHHHHHhcCCcccCCCceEEEEEcc
Confidence            4456899999 48899999999999993      467777653

>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str}

Probab=91.27  E-value=0.2  Score=43.17  Aligned_cols=32  Identities=22%  Similarity=0.300  Sum_probs=26.9

Q ss_pred             HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEE
Q 020565           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLM   61 (324)
Q Consensus        29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lv   61 (324)
                      |++++|+|.|+ ||+|.++++.|+..|.. +.++
T Consensus         5 l~~k~vlITGas~gIG~~~a~~l~~~G~~-v~~~   37 (255)
T 3icc_A            5 LKGKVALVTGASRGIGRAIAKRLANDGAL-VAIH   37 (255)
T ss_dssp             TTTCEEEETTCSSHHHHHHHHHHHHTTCE-EEEE
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHHCCCe-EEEE
Confidence            56788999996 78999999999999975 5554

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=91.26  E-value=0.15  Score=46.38  Aligned_cols=35  Identities=6%  Similarity=0.186  Sum_probs=31.5

Q ss_pred             cCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCc
Q 020565           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV   65 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~   65 (324)
                      ..+|+|||.|..|..+|..|++.|..+++|+|...
T Consensus         4 ~~~vvIIGaG~aGl~aA~~l~~~g~~~v~lie~~~   38 (369)
T 3d1c_A            4 HHKVAIIGAGAAGIGMAITLKDFGITDVIILEKGT   38 (369)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred             cCcEEEECcCHHHHHHHHHHHHcCCCcEEEEecCC
Confidence            46799999999999999999999985699999864

>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}

Probab=91.23  E-value=0.74  Score=42.23  Aligned_cols=89  Identities=9%  Similarity=0.125  Sum_probs=51.4

Q ss_pred             HhcCcEEEEcCchhHH-HHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEe
Q 020565           29 LSKSHILVCGMKGTVA-EFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS  107 (324)
Q Consensus        29 l~~~~VliiG~g~lGs-ei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~  107 (324)
                      ++.-||.|||+|..|. ..+..|...|+.-+.++|.                      ...|++.+++..    +.+.  
T Consensus        24 m~~irvgiiG~G~~~~~~~~~~~~~~~~~lvav~d~----------------------~~~~a~~~a~~~----~~~~--   75 (361)
T 3u3x_A           24 MDELRFAAVGLNHNHIYGQVNCLLRAGARLAGFHEK----------------------DDALAAEFSAVY----ADAR--   75 (361)
T ss_dssp             --CCEEEEECCCSTTHHHHHHHHHHTTCEEEEEECS----------------------CHHHHHHHHHHS----SSCC--
T ss_pred             ccCcEEEEECcCHHHHHHHHHHhhcCCcEEEEEEcC----------------------CHHHHHHHHHHc----CCCc--
Confidence            4567999999999885 4677777777765556655                      334555444432    2111  


Q ss_pred             EeeCCCCCCchhhcC--CccEEEEcCCCHHHHHHHHHHHHhccCCccE
Q 020565          108 VEKGDLSSLDGEFYD--KFDVVVVSCCSVTTKKLINEKCRKLSKRVAF  153 (324)
Q Consensus       108 ~~~~~~~~~~~~~~~--~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~  153 (324)
                      .+     ...+++++  +.|+|++|+-+. ....+...|.+  .++++
T Consensus        76 ~~-----~~~~~ll~~~~vD~V~I~tp~~-~H~~~~~~al~--aGkhV  115 (361)
T 3u3x_A           76 RI-----ATAEEILEDENIGLIVSAAVSS-ERAELAIRAMQ--HGKDV  115 (361)
T ss_dssp             EE-----SCHHHHHTCTTCCEEEECCCHH-HHHHHHHHHHH--TTCEE
T ss_pred             cc-----CCHHHHhcCCCCCEEEEeCChH-HHHHHHHHHHH--CCCeE
Confidence            11     12244554  488998887553 34445555655  56543

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=91.21  E-value=0.27  Score=43.71  Aligned_cols=35  Identities=20%  Similarity=0.165  Sum_probs=30.0

Q ss_pred             HHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        28 ~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      +|++++++|.|. ||+|.++++.|+..|.. +.++|.
T Consensus        46 ~l~~k~vlVTGas~GIG~aia~~la~~G~~-V~~~~~   81 (294)
T 3r3s_A           46 RLKDRKALVTGGDSGIGRAAAIAYAREGAD-VAINYL   81 (294)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEECC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeC
Confidence            578899999996 78999999999999976 666654

>3nv9_A Malic enzyme; rossmann fold, oxidoreductase; 2.25A {Entamoeba histolytica}

Probab=91.21  E-value=0.14  Score=48.50  Aligned_cols=39  Identities=15%  Similarity=0.331  Sum_probs=36.2

Q ss_pred             HHHhcCcEEEEcCchhHHHHHHHHHHhCC--CcEEEEcCCc
Q 020565           27 RRLSKSHILVCGMKGTVAEFCKNIVLAGV--GSLTLMDDRV   65 (324)
Q Consensus        27 ~~l~~~~VliiG~g~lGsei~k~L~~~Gv--~~i~lvD~d~   65 (324)
                      ++|++.||++.|+|+.|..+++.|+..|+  ++|.++|..-
T Consensus       215 k~l~d~riV~~GAGaAGigia~ll~~~G~~~~~i~l~D~~G  255 (487)
T 3nv9_A          215 KDIHECRMVFIGAGSSNTTCLRLIVTAGADPKKIVMFDSKG  255 (487)
T ss_dssp             CCGGGCCEEEECCSHHHHHHHHHHHHTTCCGGGEEEEETTE
T ss_pred             CChhhcEEEEECCCHHHHHHHHHHHHcCCCcccEEEEeccc
Confidence            57899999999999999999999999999  8999999853

>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=91.19  E-value=0.23  Score=43.70  Aligned_cols=34  Identities=15%  Similarity=0.270  Sum_probs=28.8

Q ss_pred             HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      |++++++|.|. ||+|.++++.|+..|.. +.++|.
T Consensus         4 l~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r   38 (280)
T 1xkq_A            4 FSNKTVIITGSSNGIGRTTAILFAQEGAN-VTITGR   38 (280)
T ss_dssp             TTTCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCE-EEEEeC
Confidence            56788999985 78999999999999975 777765

>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A*

Probab=91.17  E-value=1.3  Score=40.34  Aligned_cols=100  Identities=17%  Similarity=0.248  Sum_probs=59.9

Q ss_pred             cCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEe
Q 020565           31 KSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVE  109 (324)
Q Consensus        31 ~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~  109 (324)
                      ..+|+|.|+ |.+|..+++.|+..|.. ++.++.+.                    .+.++    +.+.+ .+  .++..
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~-V~~~~R~~--------------------~~~~~----~~l~~-~~--~v~~v   56 (352)
T 1xgk_A            5 KKTIAVVGATGRQGASLIRVAAAVGHH-VRAQVHSL--------------------KGLIA----EELQA-IP--NVTLF   56 (352)
T ss_dssp             CCCEEEESTTSHHHHHHHHHHHHTTCC-EEEEESCS--------------------CSHHH----HHHHT-ST--TEEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCE-EEEEECCC--------------------ChhhH----HHHhh-cC--CcEEE
Confidence            578999996 88999999999999954 66665411                    11111    12222 12  24444


Q ss_pred             eCC-CCC--CchhhcCCccEEEEcCCCH-----HHHHHHHHHHHhccCC-c-cEEEeeecC
Q 020565          110 KGD-LSS--LDGEFYDKFDVVVVSCCSV-----TTKKLINEKCRKLSKR-V-AFYTVDCRD  160 (324)
Q Consensus       110 ~~~-~~~--~~~~~~~~~diVi~~~~~~-----~~~~~l~~~~~~~~~~-i-p~i~~~~~G  160 (324)
                      ..+ +.+  .....++++|+||.+....     ..-..+-+.|++  .+ + .||+.++.+
T Consensus        57 ~~D~l~d~~~l~~~~~~~d~Vi~~a~~~~~~~~~~~~~l~~aa~~--~g~v~~~V~~SS~~  115 (352)
T 1xgk_A           57 QGPLLNNVPLMDTLFEGAHLAFINTTSQAGDEIAIGKDLADAAKR--AGTIQHYIYSSMPD  115 (352)
T ss_dssp             ESCCTTCHHHHHHHHTTCSEEEECCCSTTSCHHHHHHHHHHHHHH--HSCCSEEEEEECCC
T ss_pred             ECCccCCHHHHHHHHhcCCEEEEcCCCCCcHHHHHHHHHHHHHHH--cCCccEEEEeCCcc
Confidence            555 543  2345577889988665322     122566677777  55 4 567666553

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=91.15  E-value=0.16  Score=46.79  Aligned_cols=34  Identities=18%  Similarity=0.184  Sum_probs=31.5

Q ss_pred             HhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565           29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        29 l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      ++..+|+|+|+|++|..++..+...|. +++++|.
T Consensus       165 l~~~~VlViGaGgvG~~aa~~a~~~Ga-~V~v~dr  198 (361)
T 1pjc_A          165 VKPGKVVILGGGVVGTEAAKMAVGLGA-QVQIFDI  198 (361)
T ss_dssp             BCCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeC
Confidence            667899999999999999999999999 7999876

>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}

Probab=91.15  E-value=0.37  Score=43.73  Aligned_cols=33  Identities=12%  Similarity=0.123  Sum_probs=24.7

Q ss_pred             cCcEEEEcCchhHHHHHHHHH-H-hCCCcEEEEcC
Q 020565           31 KSHILVCGMKGTVAEFCKNIV-L-AGVGSLTLMDD   63 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~-~-~Gv~~i~lvD~   63 (324)
                      .-+|.|||+|.+|...++.|. . .|+.-+.++|.
T Consensus         8 ~~~v~iiG~G~ig~~~~~~l~~~~~~~~~vav~d~   42 (346)
T 3cea_A            8 PLRAAIIGLGRLGERHARHLVNKIQGVKLVAACAL   42 (346)
T ss_dssp             CEEEEEECCSTTHHHHHHHHHHTCSSEEEEEEECS
T ss_pred             cceEEEEcCCHHHHHHHHHHHhcCCCcEEEEEecC
Confidence            358999999999999999998 4 35443445565

>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G

Probab=91.15  E-value=0.25  Score=42.14  Aligned_cols=28  Identities=18%  Similarity=0.299  Sum_probs=23.6

Q ss_pred             CcEEEEcC-chhHHHHHHHHHHhCCCcEEE
Q 020565           32 SHILVCGM-KGTVAEFCKNIVLAGVGSLTL   60 (324)
Q Consensus        32 ~~VliiG~-g~lGsei~k~L~~~Gv~~i~l   60 (324)
                      ++|+|.|+ |++|.++++.|+..|.. +.+
T Consensus         2 k~vlVTGasggiG~~la~~l~~~G~~-v~~   30 (244)
T 1edo_A            2 PVVVVTGASRGIGKAIALSLGKAGCK-VLV   30 (244)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCE-EEE
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCCE-EEE
Confidence            57889885 78999999999999975 544

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=91.14  E-value=0.19  Score=46.71  Aligned_cols=36  Identities=22%  Similarity=0.308  Sum_probs=31.6

Q ss_pred             hcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCc
Q 020565           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV   65 (324)
Q Consensus        30 ~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~   65 (324)
                      .+.+|+|||.|..|..+|..|++.|+.+++|+|...
T Consensus         3 ~~~dVvIVGaG~aGl~~A~~L~~~G~~~v~v~E~~~   38 (410)
T 3c96_A            3 EPIDILIAGAGIGGLSCALALHQAGIGKVTLLESSS   38 (410)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCCeEEEEECCC
Confidence            356899999999999999999999996699998754

>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A*

Probab=91.14  E-value=0.62  Score=39.85  Aligned_cols=34  Identities=29%  Similarity=0.502  Sum_probs=29.0

Q ss_pred             HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      +++++|+|.|+ |++|.++++.|+..|.. +.++|.
T Consensus         9 ~~~k~vlITGasggiG~~la~~l~~~G~~-V~~~~r   43 (254)
T 2wsb_A            9 LDGACAAVTGAGSGIGLEICRAFAASGAR-LILIDR   43 (254)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeC
Confidence            56788999996 78999999999999975 777765

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=91.11  E-value=0.14  Score=46.56  Aligned_cols=33  Identities=15%  Similarity=0.189  Sum_probs=29.4

Q ss_pred             cCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d   64 (324)
                      +--|+|||+|..|+.+|..|++.|+. ++|+|..
T Consensus         4 ~yDViIVGaGpaGl~~A~~La~~G~~-V~v~Er~   36 (397)
T 3oz2_A            4 TYDVLVVGGGPGGSTAARYAAKYGLK-TLMIEKR   36 (397)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCC-EEEECSS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCc-EEEEeCC
Confidence            34699999999999999999999996 8899863

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=91.10  E-value=0.52  Score=42.89  Aligned_cols=32  Identities=13%  Similarity=-0.047  Sum_probs=27.7

Q ss_pred             cCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      ..+|+|+|+|++|..++..+...|.. ++.+|.
T Consensus       169 g~~VlV~GaG~vG~~a~qla~~~Ga~-Vi~~~~  200 (352)
T 1e3j_A          169 GTTVLVIGAGPIGLVSVLAAKAYGAF-VVCTAR  200 (352)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCE-EEEEcC
Confidence            56899999999999999999899987 777664

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=91.10  E-value=0.39  Score=44.23  Aligned_cols=33  Identities=18%  Similarity=0.120  Sum_probs=29.1

Q ss_pred             cCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      ..+|+|+|+|++|..++..+...|.++++.+|.
T Consensus       196 g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~  228 (376)
T 1e3i_A          196 GSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDI  228 (376)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcC
Confidence            468999999999999999998999977888765

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=91.10  E-value=0.39  Score=42.55  Aligned_cols=35  Identities=14%  Similarity=0.236  Sum_probs=30.1

Q ss_pred             HHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        28 ~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      .|++++|+|.|. ||+|.++++.|+..|.. +.++|.
T Consensus        44 ~l~gk~vlVTGas~GIG~aia~~la~~G~~-V~~~~r   79 (291)
T 3ijr_A           44 KLKGKNVLITGGDSGIGRAVSIAFAKEGAN-IAIAYL   79 (291)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeC
Confidence            578889999996 78999999999999975 777665

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=91.07  E-value=0.35  Score=42.62  Aligned_cols=35  Identities=17%  Similarity=0.198  Sum_probs=29.6

Q ss_pred             HHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        28 ~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      .|+.++|+|.|. ||+|.++++.|+..|.. +.++|.
T Consensus        26 ~l~gk~vlVTGas~gIG~aia~~la~~G~~-V~~~~r   61 (277)
T 3gvc_A           26 DLAGKVAIVTGAGAGIGLAVARRLADEGCH-VLCADI   61 (277)
T ss_dssp             -CTTCEEEETTTTSTHHHHHHHHHHHTTCE-EEEEES
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeC
Confidence            578889999996 68999999999999984 777765

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1

Probab=91.07  E-value=0.21  Score=45.61  Aligned_cols=37  Identities=16%  Similarity=0.044  Sum_probs=32.8

Q ss_pred             HHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565           27 RRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (324)
Q Consensus        27 ~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d   64 (324)
                      ..|..++|.|||+|.+|..+|+.|...|.. ++.+|..
T Consensus       141 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~-V~~~d~~  177 (333)
T 1dxy_A          141 KELGQQTVGVMGTGHIGQVAIKLFKGFGAK-VIAYDPY  177 (333)
T ss_dssp             CCGGGSEEEEECCSHHHHHHHHHHHHTTCE-EEEECSS
T ss_pred             cCCCCCEEEEECcCHHHHHHHHHHHHCCCE-EEEECCC
Confidence            358899999999999999999999999975 8888864

>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A*

Probab=91.04  E-value=0.3  Score=42.31  Aligned_cols=34  Identities=32%  Similarity=0.444  Sum_probs=29.1

Q ss_pred             HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      |++++|+|.|. ||+|.++++.|+..|.. +.++|.
T Consensus         3 l~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r   37 (254)
T 1hdc_A            3 LSGKTVIITGGARGLGAEAARQAVAAGAR-VVLADV   37 (254)
T ss_dssp             CCCSEEEEETTTSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeC
Confidence            56788999996 79999999999999975 777765

>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}

Probab=91.01  E-value=0.33  Score=43.67  Aligned_cols=94  Identities=12%  Similarity=0.179  Sum_probs=56.3

Q ss_pred             HHHHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCC
Q 020565           26 QRRLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMV  104 (324)
Q Consensus        26 q~~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v  104 (324)
                      +..|+.++|+|.|. ||+|.++++.|+..|.. +.++|...-. .++..    ...     ...+.+.+.+.+.+..+  
T Consensus        41 m~~l~gk~~lVTGas~GIG~aia~~la~~G~~-Vv~~~~~~~~-~~~~~----~~~-----~~~~~~~~~~~~~~~~~--  107 (317)
T 3oec_A           41 MNRLQGKVAFITGAARGQGRTHAVRLAQDGAD-IVAIDLCRQQ-PNLDY----AQG-----SPEELKETVRLVEEQGR--  107 (317)
T ss_dssp             -CTTTTCEEEESSCSSHHHHHHHHHHHHTTCE-EEEEECCCCC-TTCCS----CCC-----CHHHHHHHHHHHHHTTC--
T ss_pred             hhccCCCEEEEeCCCcHHHHHHHHHHHHCCCe-EEEEeccccc-ccccc----ccc-----CHHHHHHHHHHHHhcCC--
Confidence            34578889999996 78999999999999985 7777653211 11110    000     23345555566665554  


Q ss_pred             eEeEeeCCCCCC--chhh-------cCCccEEEEcCC
Q 020565          105 RVSVEKGDLSSL--DGEF-------YDKFDVVVVSCC  132 (324)
Q Consensus       105 ~v~~~~~~~~~~--~~~~-------~~~~diVi~~~~  132 (324)
                      ++..+..++.+.  ...+       +...|++|.+..
T Consensus       108 ~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lVnnAg  144 (317)
T 3oec_A          108 RIIARQADVRDLASLQAVVDEALAEFGHIDILVSNVG  144 (317)
T ss_dssp             CEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             eEEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            445555565542  1222       347888887653

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=90.97  E-value=0.6  Score=41.48  Aligned_cols=91  Identities=11%  Similarity=0.186  Sum_probs=55.3

Q ss_pred             HHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeE
Q 020565           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRV  106 (324)
Q Consensus        28 ~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v  106 (324)
                      .|+.++++|.|. +|+|.++++.|+..|.. +.++|.+.-..    ..-+ ...     ...+.+.+.+.+.+..+  ++
T Consensus        25 ~l~gk~~lVTGas~GIG~aia~~la~~G~~-V~~~~~~~~~~----~~~~-~~~-----~~~~~~~~~~~~~~~~~--~~   91 (299)
T 3t7c_A           25 KVEGKVAFITGAARGQGRSHAITLAREGAD-IIAIDVCKQLD----GVKL-PMS-----TPDDLAETVRQVEALGR--RI   91 (299)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEECCSCCT----TCCS-CCC-----CHHHHHHHHHHHHHTTC--CE
T ss_pred             ccCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEecccccc----cccc-ccc-----CHHHHHHHHHHHHhcCC--ce
Confidence            577889999996 68999999999999986 77776532110    0000 000     23455556666666554  44


Q ss_pred             eEeeCCCCCC--chh-------hcCCccEEEEcC
Q 020565          107 SVEKGDLSSL--DGE-------FYDKFDVVVVSC  131 (324)
Q Consensus       107 ~~~~~~~~~~--~~~-------~~~~~diVi~~~  131 (324)
                      .....++.+.  ...       .+...|++|.+.
T Consensus        92 ~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~lv~nA  125 (299)
T 3t7c_A           92 IASQVDVRDFDAMQAAVDDGVTQLGRLDIVLANA  125 (299)
T ss_dssp             EEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             EEEECCCCCHHHHHHHHHHHHHHhCCCCEEEECC
Confidence            5555555542  112       234688888664

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=90.96  E-value=0.34  Score=41.58  Aligned_cols=35  Identities=14%  Similarity=0.239  Sum_probs=29.7

Q ss_pred             HHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        28 ~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      .+++++|+|.|+ ||+|.++++.|+..|.. +.++|.
T Consensus        11 ~~~~k~vlVTGas~gIG~~~a~~l~~~G~~-V~~~~r   46 (249)
T 3f9i_A           11 DLTGKTSLITGASSGIGSAIARLLHKLGSK-VIISGS   46 (249)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             cCCCCEEEEECCCChHHHHHHHHHHHCCCE-EEEEcC
Confidence            467889999996 78999999999999965 777665

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans}

Probab=90.96  E-value=0.22  Score=45.45  Aligned_cols=37  Identities=11%  Similarity=-0.015  Sum_probs=32.8

Q ss_pred             HHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565           27 RRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (324)
Q Consensus        27 ~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d   64 (324)
                      ..|..++|.|||+|.+|..+++.|...|.. ++.+|..
T Consensus       142 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~-V~~~d~~  178 (331)
T 1xdw_A          142 KEVRNCTVGVVGLGRIGRVAAQIFHGMGAT-VIGEDVF  178 (331)
T ss_dssp             CCGGGSEEEEECCSHHHHHHHHHHHHTTCE-EEEECSS
T ss_pred             cCCCCCEEEEECcCHHHHHHHHHHHHCCCE-EEEECCC
Confidence            358899999999999999999999999975 8888864

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=90.94  E-value=0.2  Score=46.44  Aligned_cols=35  Identities=23%  Similarity=0.380  Sum_probs=31.2

Q ss_pred             HHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565           28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        28 ~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      .|..++|+|+|+|.+|..+++.|...|.. +++.|.
T Consensus       170 ~L~GktV~V~G~G~VG~~~A~~L~~~Gak-Vvv~D~  204 (364)
T 1leh_A          170 SLEGLAVSVQGLGNVAKALCKKLNTEGAK-LVVTDV  204 (364)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCE-EEEECS
T ss_pred             CCCcCEEEEECchHHHHHHHHHHHHCCCE-EEEEcC
Confidence            36789999999999999999999999985 778774

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=90.93  E-value=0.22  Score=45.82  Aligned_cols=34  Identities=12%  Similarity=0.228  Sum_probs=30.9

Q ss_pred             cCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCc
Q 020565           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV   65 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~   65 (324)
                      +.+|+|||.|..|..+|..|++.|+. ++|+|...
T Consensus         2 ~~dV~IvGaG~aGl~~A~~L~~~G~~-v~v~E~~~   35 (394)
T 1k0i_A            2 KTQVAIIGAGPSGLLLGQLLHKAGID-NVILERQT   35 (394)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHTCC-EEEECSSC
T ss_pred             CccEEEECCCHHHHHHHHHHHHCCCC-EEEEeCCC
Confidence            46899999999999999999999986 99999765

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=90.92  E-value=0.19  Score=45.26  Aligned_cols=36  Identities=19%  Similarity=0.166  Sum_probs=31.9

Q ss_pred             HHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565           27 RRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        27 ~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      ..|..++|.|||+|.+|..+++.|...|.. ++.+|.
T Consensus       138 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~-V~~~d~  173 (307)
T 1wwk_A          138 IELEGKTIGIIGFGRIGYQVAKIANALGMN-ILLYDP  173 (307)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCE-EEEECS
T ss_pred             cccCCceEEEEccCHHHHHHHHHHHHCCCE-EEEECC
Confidence            358889999999999999999999999964 778776

>2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase, oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A*

Probab=90.91  E-value=0.51  Score=45.29  Aligned_cols=34  Identities=21%  Similarity=0.346  Sum_probs=29.5

Q ss_pred             hcCcEEEEc-CchhHHHHHHHHHHhCCCcEEEEcC
Q 020565           30 SKSHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        30 ~~~~VliiG-~g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      .+.+|+|.| .|++|.++++.|+..|..++.+++.
T Consensus       225 ~~~~vLITGgtGgIG~~la~~La~~G~~~vvl~~R  259 (486)
T 2fr1_A          225 PTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSR  259 (486)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEES
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence            357799998 5899999999999999988888765

>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0

Probab=90.91  E-value=0.64  Score=39.71  Aligned_cols=33  Identities=27%  Similarity=0.405  Sum_probs=27.5

Q ss_pred             hcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           30 SKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        30 ~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      ..++|+|.|. ||+|.++++.|+..|.. +.++|.
T Consensus         2 s~k~vlVTGas~GIG~a~a~~l~~~G~~-V~~~~r   35 (235)
T 3l6e_A            2 SLGHIIVTGAGSGLGRALTIGLVERGHQ-VSMMGR   35 (235)
T ss_dssp             -CCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEEC
Confidence            4568999996 78999999999999975 777765

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*

Probab=90.90  E-value=0.21  Score=45.54  Aligned_cols=36  Identities=17%  Similarity=0.094  Sum_probs=31.9

Q ss_pred             HHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565           27 RRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        27 ~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      ..|..++|.|||+|.+|..+++.|...|.. +..+|.
T Consensus       142 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~-V~~~d~  177 (333)
T 1j4a_A          142 REVRDQVVGVVGTGHIGQVFMQIMEGFGAK-VITYDI  177 (333)
T ss_dssp             CCGGGSEEEEECCSHHHHHHHHHHHHTTCE-EEEECS
T ss_pred             ccCCCCEEEEEccCHHHHHHHHHHHHCCCE-EEEECC
Confidence            358899999999999999999999999974 777776

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=90.90  E-value=0.2  Score=45.67  Aligned_cols=36  Identities=11%  Similarity=0.111  Sum_probs=31.8

Q ss_pred             cCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccc
Q 020565           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVT   67 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~   67 (324)
                      ...|+|||.|.+|+.+|..|++.|. +++|+|...+.
T Consensus         6 ~~dVvVIG~Gi~Gls~A~~La~~G~-~V~vle~~~~~   41 (363)
T 1c0p_A            6 QKRVVVLGSGVIGLSSALILARKGY-SVHILARDLPE   41 (363)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSCTT
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCC-EEEEEeccCCC
Confidence            4679999999999999999999997 59999986554

>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2

Probab=90.90  E-value=0.26  Score=42.82  Aligned_cols=35  Identities=14%  Similarity=0.160  Sum_probs=28.9

Q ss_pred             HHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        28 ~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      .+++++|+|.|. |++|.++++.|+..|.. +.+++.
T Consensus        18 ~~~~k~vlItGasggiG~~la~~l~~~G~~-v~~~~r   53 (274)
T 1ja9_A           18 PLAGKVALTTGAGRGIGRGIAIELGRRGAS-VVVNYG   53 (274)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEcC
Confidence            367788999996 78999999999999974 666554

>1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A*

Probab=90.90  E-value=1.5  Score=38.25  Aligned_cols=30  Identities=20%  Similarity=0.203  Sum_probs=25.4

Q ss_pred             cEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCC
Q 020565           33 HILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDR   64 (324)
Q Consensus        33 ~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d   64 (324)
                      +|+|.|+ |.+|+.+++.|. .|. +++.+|..
T Consensus         2 ~ilVtGatG~iG~~l~~~L~-~g~-~V~~~~r~   32 (299)
T 1n2s_A            2 NILLFGKTGQVGWELQRSLA-PVG-NLIALDVH   32 (299)
T ss_dssp             EEEEECTTSHHHHHHHHHTT-TTS-EEEEECTT
T ss_pred             eEEEECCCCHHHHHHHHHhh-cCC-eEEEeccc
Confidence            6999997 889999999999 784 57777764

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=90.89  E-value=0.19  Score=45.89  Aligned_cols=37  Identities=8%  Similarity=0.029  Sum_probs=32.2

Q ss_pred             hcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccc
Q 020565           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVT   67 (324)
Q Consensus        30 ~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~   67 (324)
                      ....|+|||.|..|..+|..|++.|. +++|+|...+.
T Consensus        16 ~~~dvvIIGgG~~Gl~~A~~La~~G~-~V~llE~~~~~   52 (382)
T 1ryi_A           16 RHYEAVVIGGGIIGSAIAYYLAKENK-NTALFESGTMG   52 (382)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSTT
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCCC-cEEEEeCCCCC
Confidence            34689999999999999999999998 59999987543

>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}

Probab=90.88  E-value=0.61  Score=41.00  Aligned_cols=35  Identities=17%  Similarity=0.158  Sum_probs=29.7

Q ss_pred             HHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        28 ~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      .+++++|+|.|+ ||+|.++++.|+..|.. +.++|.
T Consensus        24 ~l~~k~vlVTGas~GIG~aia~~l~~~G~~-V~~~~r   59 (277)
T 4dqx_A           24 DLNQRVCIVTGGGSGIGRATAELFAKNGAY-VVVADV   59 (277)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeC
Confidence            367788999996 78999999999999985 777765

>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E

Probab=90.86  E-value=0.41  Score=41.31  Aligned_cols=34  Identities=18%  Similarity=0.187  Sum_probs=28.8

Q ss_pred             HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      ++.++++|.|. ||+|.++++.|+..|.. +.++|.
T Consensus         7 l~gk~~lVTGas~gIG~a~a~~l~~~G~~-V~~~~r   41 (248)
T 3op4_A            7 LEGKVALVTGASRGIGKAIAELLAERGAK-VIGTAT   41 (248)
T ss_dssp             CTTCEEEESSCSSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEeC
Confidence            56788999996 78999999999999986 777665

>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens}

Probab=90.85  E-value=0.18  Score=43.83  Aligned_cols=34  Identities=15%  Similarity=0.247  Sum_probs=28.4

Q ss_pred             HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      |++++++|.|. ||+|.++++.|+..|.. +.++|.
T Consensus         3 l~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r   37 (260)
T 2qq5_A            3 MNGQVCVVTGASRGIGRGIALQLCKAGAT-VYITGR   37 (260)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEeC
Confidence            56778999985 78999999999999974 777664

>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5

Probab=90.84  E-value=0.91  Score=40.63  Aligned_cols=34  Identities=18%  Similarity=0.128  Sum_probs=24.6

Q ss_pred             hcCcEEEEcCchhHHH-HHHHHHHh-CCCcEEEEcC
Q 020565           30 SKSHILVCGMKGTVAE-FCKNIVLA-GVGSLTLMDD   63 (324)
Q Consensus        30 ~~~~VliiG~g~lGse-i~k~L~~~-Gv~~i~lvD~   63 (324)
                      +..+|.|||+|.+|.. .++.|... |+.-+.++|.
T Consensus         4 ~~~~vgiiG~G~~g~~~~~~~l~~~~~~~lvav~d~   39 (319)
T 1tlt_A            4 KKLRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSP   39 (319)
T ss_dssp             -CEEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECS
T ss_pred             CcceEEEECCCHHHHHHHHHHHHhCCCeEEEEEECC
Confidence            3468999999999996 88988763 5443336665

>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*

Probab=90.83  E-value=0.32  Score=42.65  Aligned_cols=35  Identities=20%  Similarity=0.272  Sum_probs=28.8

Q ss_pred             HHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        28 ~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      .|+.++|+|.|. ||+|.++++.|+..|.. +.+.|.
T Consensus        25 ~l~~k~vlVTGas~gIG~aia~~la~~G~~-V~~~~~   60 (269)
T 4dmm_A           25 PLTDRIALVTGASRGIGRAIALELAAAGAK-VAVNYA   60 (269)
T ss_dssp             TTTTCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEeC
Confidence            467888999996 78999999999999976 555543

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=90.81  E-value=0.63  Score=40.29  Aligned_cols=35  Identities=17%  Similarity=0.229  Sum_probs=30.2

Q ss_pred             HHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        28 ~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      .++.++++|.|. ||+|.++++.|+..|.. +.++|.
T Consensus         5 ~l~gk~~lVTGas~gIG~a~a~~l~~~G~~-V~~~~r   40 (255)
T 4eso_A            5 NYQGKKAIVIGGTHGMGLATVRRLVEGGAE-VLLTGR   40 (255)
T ss_dssp             TTTTCEEEEETCSSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEeC
Confidence            467889999996 78999999999999984 777765

>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ...

Probab=90.80  E-value=0.36  Score=42.61  Aligned_cols=35  Identities=11%  Similarity=0.155  Sum_probs=28.6

Q ss_pred             HHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        28 ~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      .|++++++|.|+ ||+|.++++.|+..|.. +.++|.
T Consensus        20 ~l~~k~~lVTGas~gIG~aia~~L~~~G~~-V~~~~r   55 (288)
T 2x9g_A           20 HMEAPAAVVTGAAKRIGRAIAVKLHQTGYR-VVIHYH   55 (288)
T ss_dssp             --CCCEEEETTCSSHHHHHHHHHHHHHTCE-EEEEES
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCe-EEEEeC
Confidence            477889999996 78999999999999975 777665

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=90.78  E-value=0.59  Score=45.56  Aligned_cols=34  Identities=15%  Similarity=0.341  Sum_probs=30.1

Q ss_pred             hcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (324)
Q Consensus        30 ~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d   64 (324)
                      .+.||+|+|+|.+|..+++.|...|.. ++++|.|
T Consensus       126 ~~~hviI~G~g~~g~~la~~L~~~~~~-vvvid~~  159 (565)
T 4gx0_A          126 TRGHILIFGIDPITRTLIRKLESRNHL-FVVVTDN  159 (565)
T ss_dssp             CCSCEEEESCCHHHHHHHHHTTTTTCC-EEEEESC
T ss_pred             cCCeEEEECCChHHHHHHHHHHHCCCC-EEEEECC
Confidence            356899999999999999999999986 8888873

>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=90.77  E-value=0.8  Score=37.88  Aligned_cols=35  Identities=11%  Similarity=0.143  Sum_probs=28.7

Q ss_pred             hcCcEEEEc-CchhHHHHHHHHHHhCC-CcEEEEcCC
Q 020565           30 SKSHILVCG-MKGTVAEFCKNIVLAGV-GSLTLMDDR   64 (324)
Q Consensus        30 ~~~~VliiG-~g~lGsei~k~L~~~Gv-~~i~lvD~d   64 (324)
                      +..+|+|.| .|++|.++++.|+..|. .++++++.+
T Consensus         4 ~~~~vlVtGatG~iG~~l~~~l~~~g~~~~V~~~~r~   40 (215)
T 2a35_A            4 TPKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARK   40 (215)
T ss_dssp             CCCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSS
T ss_pred             CCceEEEECCCcHHHHHHHHHHHhCCCCCeEEEEeCC
Confidence            356899999 58899999999999997 367777653

>2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus}

Probab=90.76  E-value=1.8  Score=38.24  Aligned_cols=38  Identities=8%  Similarity=0.045  Sum_probs=27.3

Q ss_pred             HHHHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCC
Q 020565           26 QRRLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDR   64 (324)
Q Consensus        26 q~~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d   64 (324)
                      .++-+..+|+|.|+ |.+|+.+++.|+..|. +++++|..
T Consensus         7 ~~~~~~~~vlVTGatG~iG~~l~~~L~~~G~-~V~~~~r~   45 (321)
T 2pk3_A            7 HHHHGSMRALITGVAGFVGKYLANHLTEQNV-EVFGTSRN   45 (321)
T ss_dssp             ------CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             ccccCcceEEEECCCChHHHHHHHHHHHCCC-EEEEEecC
Confidence            34557788999995 7899999999999996 57777653

>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}

Probab=90.76  E-value=0.71  Score=41.63  Aligned_cols=38  Identities=18%  Similarity=0.205  Sum_probs=27.4

Q ss_pred             hcCcEEEEcCchhHHHHHHHHHHhC-CCcEEEEcCCccc
Q 020565           30 SKSHILVCGMKGTVAEFCKNIVLAG-VGSLTLMDDRVVT   67 (324)
Q Consensus        30 ~~~~VliiG~g~lGsei~k~L~~~G-v~~i~lvD~d~v~   67 (324)
                      +.-||.|||+|.+|...+..|...+ +.-+.++|.+.-.
T Consensus         4 ~~~rigiiG~G~ig~~~~~~l~~~~~~~~~av~d~~~~~   42 (329)
T 3evn_A            4 SKVRYGVVSTAKVAPRFIEGVRLAGNGEVVAVSSRTLES   42 (329)
T ss_dssp             -CEEEEEEBCCTTHHHHHHHHHHHCSEEEEEEECSCSST
T ss_pred             CceEEEEEechHHHHHHHHHHHhCCCcEEEEEEcCCHHH
Confidence            4468999999999999999998875 3323356765433

>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}

Probab=90.76  E-value=0.35  Score=42.40  Aligned_cols=36  Identities=17%  Similarity=0.329  Sum_probs=31.0

Q ss_pred             HHHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           27 RRLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        27 ~~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      ..+++++|+|.|+ ||+|.++++.|+..|.. +.++|.
T Consensus        26 ~~l~~k~vlVTGas~GIG~aia~~l~~~G~~-Vi~~~r   62 (281)
T 3ppi_A           26 KQFEGASAIVSGGAGGLGEATVRRLHADGLG-VVIADL   62 (281)
T ss_dssp             GGGTTEEEEEETTTSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             hccCCCEEEEECCCChHHHHHHHHHHHCCCE-EEEEeC
Confidence            4678889999996 78999999999999985 777765

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=90.75  E-value=0.21  Score=45.75  Aligned_cols=36  Identities=17%  Similarity=0.109  Sum_probs=31.6

Q ss_pred             cCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccc
Q 020565           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVT   67 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~   67 (324)
                      ...|+|||.|..|..+|..|++.|.. ++|+|....-
T Consensus         3 ~~dvvIIGaG~~Gl~~A~~La~~G~~-V~vie~~~~~   38 (389)
T 2gf3_A            3 HFDVIVVGAGSMGMAAGYQLAKQGVK-TLLVDAFDPP   38 (389)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCC-EEEECSSCSS
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCe-EEEEeCCCCC
Confidence            35799999999999999999999975 9999987543

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=90.71  E-value=0.18  Score=46.01  Aligned_cols=36  Identities=17%  Similarity=0.237  Sum_probs=32.0

Q ss_pred             HHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565           27 RRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        27 ~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      ..|..++|.|||+|.+|..+++.|...|. +++.+|.
T Consensus       142 ~~l~g~~vgIIG~G~iG~~vA~~l~~~G~-~V~~~d~  177 (333)
T 2d0i_A          142 ESLYGKKVGILGMGAIGKAIARRLIPFGV-KLYYWSR  177 (333)
T ss_dssp             CCSTTCEEEEECCSHHHHHHHHHHGGGTC-EEEEECS
T ss_pred             CCCCcCEEEEEccCHHHHHHHHHHHHCCC-EEEEECC
Confidence            35888999999999999999999999997 4888876

>1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A*

Probab=90.71  E-value=0.72  Score=42.36  Aligned_cols=35  Identities=11%  Similarity=0.077  Sum_probs=27.1

Q ss_pred             HHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        28 ~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      .-...+|||.|. |-+|+.+++.|+..|. +++++|.
T Consensus         8 ~~~~~~vlVTG~tGfIG~~l~~~L~~~G~-~V~~~~r   43 (404)
T 1i24_A            8 HHHGSRVMVIGGDGYCGWATALHLSKKNY-EVCIVDN   43 (404)
T ss_dssp             ----CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEEC
T ss_pred             ccCCCeEEEeCCCcHHHHHHHHHHHhCCC-eEEEEEe
Confidence            346688999996 6799999999999996 5888775

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=90.70  E-value=0.31  Score=42.63  Aligned_cols=35  Identities=23%  Similarity=0.244  Sum_probs=28.9

Q ss_pred             HHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        28 ~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      .|++++++|.|. ||+|.++++.|+..|.. +.+.|.
T Consensus        15 ~l~~k~~lVTGas~gIG~aia~~l~~~G~~-V~~~~~   50 (270)
T 3is3_A           15 RLDGKVALVTGSGRGIGAAVAVHLGRLGAK-VVVNYA   50 (270)
T ss_dssp             CCTTCEEEESCTTSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             CcCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEcC
Confidence            477889999996 68999999999999985 555443

>2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis}

Probab=90.69  E-value=2.1  Score=37.89  Aligned_cols=31  Identities=29%  Similarity=0.490  Sum_probs=26.1

Q ss_pred             CcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           32 SHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        32 ~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      .+|+|.|+ |.+|+.+++.|...|. +++++|.
T Consensus         2 ~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r   33 (330)
T 2c20_A            2 NSILICGGAGYIGSHAVKKLVDEGL-SVVVVDN   33 (330)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEEC
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCC-EEEEEeC
Confidence            47999985 8899999999999995 4777765

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=90.63  E-value=0.48  Score=43.52  Aligned_cols=33  Identities=21%  Similarity=0.168  Sum_probs=29.1

Q ss_pred             cCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      ..+|+|+|+|++|..++..+...|..+++.+|.
T Consensus       191 g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~  223 (373)
T 2fzw_A          191 GSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDI  223 (373)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTCSEEEEECS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcC
Confidence            468999999999999999999999977888765

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=90.59  E-value=0.6  Score=40.46  Aligned_cols=34  Identities=21%  Similarity=0.282  Sum_probs=28.5

Q ss_pred             HhcCcEEEEcCc---hhHHHHHHHHHHhCCCcEEEEcC
Q 020565           29 LSKSHILVCGMK---GTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        29 l~~~~VliiG~g---~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      ++.++|+|.|++   |+|.++++.|+..|.. +.++|.
T Consensus         5 l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~-V~~~~r   41 (266)
T 3oig_A            5 LEGRNIVVMGVANKRSIAWGIARSLHEAGAR-LIFTYA   41 (266)
T ss_dssp             CTTCEEEEECCCSTTSHHHHHHHHHHHTTCE-EEEEES
T ss_pred             cCCCEEEEEcCCCCCcHHHHHHHHHHHCCCE-EEEecC
Confidence            567889999974   3999999999999986 777665

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=90.57  E-value=0.14  Score=47.37  Aligned_cols=36  Identities=14%  Similarity=0.228  Sum_probs=31.9

Q ss_pred             HhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCc
Q 020565           29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV   65 (324)
Q Consensus        29 l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~   65 (324)
                      +...+|+|||.|..|..+|..|++.|+ +++|+|...
T Consensus        24 ~~~~dV~IVGaG~aGl~~A~~L~~~G~-~v~v~E~~~   59 (398)
T 2xdo_A           24 LSDKNVAIIGGGPVGLTMAKLLQQNGI-DVSVYERDN   59 (398)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTC-EEEEEECSS
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCC-CEEEEeCCC
Confidence            456789999999999999999999998 499999753

>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}

Probab=90.56  E-value=0.23  Score=43.38  Aligned_cols=82  Identities=24%  Similarity=0.288  Sum_probs=53.5

Q ss_pred             HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEe
Q 020565           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS  107 (324)
Q Consensus        29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~  107 (324)
                      |++++++|.|. +|+|.++++.|+..|.. +.++|..                +.   ...+.+.+.+.+++..  .++.
T Consensus         9 l~~k~vlVTGas~GIG~aia~~la~~G~~-V~~~~r~----------------~~---~~~~~~~~~~~~~~~~--~~~~   66 (262)
T 3ksu_A            9 LKNKVIVIAGGIKNLGALTAKTFALESVN-LVLHYHQ----------------AK---DSDTANKLKDELEDQG--AKVA   66 (262)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHTTSSCE-EEEEESC----------------GG---GHHHHHHHHHHHHTTT--CEEE
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEecC----------------cc---CHHHHHHHHHHHHhcC--CcEE
Confidence            57789999996 78999999999999985 6665431                01   2335566666666654  3555


Q ss_pred             EeeCCCCCC--chh-------hcCCccEEEEcCC
Q 020565          108 VEKGDLSSL--DGE-------FYDKFDVVVVSCC  132 (324)
Q Consensus       108 ~~~~~~~~~--~~~-------~~~~~diVi~~~~  132 (324)
                      .+..++++.  ...       .+...|++|.+..
T Consensus        67 ~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lvnnAg  100 (262)
T 3ksu_A           67 LYQSDLSNEEEVAKLFDFAEKEFGKVDIAINTVG  100 (262)
T ss_dssp             EEECCCCSHHHHHHHHHHHHHHHCSEEEEEECCC
T ss_pred             EEECCCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            566666542  112       2346788887654

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=90.51  E-value=0.2  Score=46.28  Aligned_cols=34  Identities=15%  Similarity=0.216  Sum_probs=31.3

Q ss_pred             HhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565           29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        29 l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      ++..+|+|+|+|++|..+++.+...|. +++++|.
T Consensus       164 l~~~~V~ViGaG~iG~~~a~~l~~~Ga-~V~~~d~  197 (369)
T 2eez_A          164 VAPASVVILGGGTVGTNAAKIALGMGA-QVTILDV  197 (369)
T ss_dssp             BCCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEEC
Confidence            678999999999999999999999998 6888876

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=90.47  E-value=0.18  Score=45.96  Aligned_cols=35  Identities=17%  Similarity=0.200  Sum_probs=31.2

Q ss_pred             cCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCcc
Q 020565           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVV   66 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v   66 (324)
                      +..|+|||.|.+|+.+|..|++.|.. ++|+|....
T Consensus         2 ~~dvvIIG~Gi~Gl~~A~~La~~G~~-V~vle~~~~   36 (372)
T 2uzz_A            2 KYDLIIIGSGSVGAAAGYYATRAGLN-VLMTDAHMP   36 (372)
T ss_dssp             CEEEEESCTTHHHHHHHHHHHHTTCC-EEEECSSCS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCe-EEEEecCCC
Confidence            35799999999999999999999985 999998654

>4f6l_B AUSA reductase domain protein; thioester reductase, oxidoreductase; 3.86A {Staphylococcus aureus}

Probab=90.47  E-value=0.34  Score=46.50  Aligned_cols=110  Identities=11%  Similarity=0.053  Sum_probs=63.9

Q ss_pred             CcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCC-------C
Q 020565           32 SHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNP-------M  103 (324)
Q Consensus        32 ~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp-------~  103 (324)
                      .+|+|.|+ |.+|+.+++.|...|. +++.++...-                   .....+.+.+.++...+       .
T Consensus       151 ~~VLVTGatG~iG~~l~~~L~~~g~-~V~~l~R~~~-------------------~~~~~~~l~~~l~~~~~~~~~~~~~  210 (508)
T 4f6l_B          151 GNTLLTGATGFLGAYLIEALQGYSH-RIYCFIRADN-------------------EEIAWYKLMTNLNDYFSEETVEMML  210 (508)
T ss_dssp             EEEEESCTTSHHHHHHHHHTBTTEE-EEEEEEESSS-------------------HHHHHHHHHHHHHHHSCHHHHHHHS
T ss_pred             CeEEEECCccchHHHHHHHHHhcCC-EEEEEECCCC-------------------hHHHHHHHHHHHHHhcccccchhcc
Confidence            57999996 8899999999966664 3555543110                   11112222233322210       1


Q ss_pred             CeEeEeeCCCCC-CchhhcCCccEEEEcCCCH--------------HHHHHHHHHHHhccCCccEEEeeecCceEE
Q 020565          104 VRVSVEKGDLSS-LDGEFYDKFDVVVVSCCSV--------------TTKKLINEKCRKLSKRVAFYTVDCRDSCGE  164 (324)
Q Consensus       104 v~v~~~~~~~~~-~~~~~~~~~diVi~~~~~~--------------~~~~~l~~~~~~~~~~ip~i~~~~~G~~g~  164 (324)
                      -+++....++.+ .......++|+||.+....              .....+-+.|++  ...+++++++.+. |.
T Consensus       211 ~~v~~v~~Dl~d~~~l~~~~~~D~Vih~Aa~~~~~~~~~~~~~~Nv~gt~~ll~~a~~--~~~~~v~iSS~~v-G~  283 (508)
T 4f6l_B          211 SNIEVIVGDFECMDDVVLPENMDTIIHAGARTDHFGDDDEFEKVNVQGTVDVIRLAQQ--HHARLIYVSTISV-GT  283 (508)
T ss_dssp             TTEEEEEEBTTBCSSCCCSSCCSEEEECCCC--------CCHHHHHHHHHHHHHHHHT--TTCEEEEEEESCT-TS
T ss_pred             CceEEEecCCcccccCCCccCCCEEEECCceecCCCCHHHHhhhHHHHHHHHHHHHHh--CCCcEEEeCChhh-cc
Confidence            244555555543 1111567899999876421              223456678877  7788998888877 54

>1o0s_A NAD-ME, NAD-dependent malic enzyme; oxidoreductase, oxidative decarboxylase, rossmann fold, MAla dehydrogenase; HET: NAI; 2.00A {Ascaris suum} SCOP: c.2.1.7 c.58.1.3 PDB: 1llq_A*

Probab=90.47  E-value=0.14  Score=49.90  Aligned_cols=56  Identities=21%  Similarity=0.332  Sum_probs=45.5

Q ss_pred             HHHhHHHHHhhhHHHH------------------HHHhcCcEEEEcCchhHHHHHHHHHH----hCC------CcEEEEc
Q 020565           11 TALYDRQIRVWGADAQ------------------RRLSKSHILVCGMKGTVAEFCKNIVL----AGV------GSLTLMD   62 (324)
Q Consensus        11 ~~ry~Rqi~l~g~~~q------------------~~l~~~~VliiG~g~lGsei~k~L~~----~Gv------~~i~lvD   62 (324)
                      ++||..+|-.|..+-|                  ++|++.||++.|+|+.|..+++.|+.    .|+      ++|.++|
T Consensus       282 l~ryr~~ipvFnDDiqGTA~V~lAgllnAlki~gk~l~d~riv~~GAGaAgigia~ll~~~m~~~Gl~~eeA~~~i~~vD  361 (605)
T 1o0s_A          282 LDKYQDKYTMFNDDIQGTASVIVAGLLTCTRVTKKLVSQEKYLFFGAGAASTGIAEMIVHQMQNEGISKEEACNRIYLMD  361 (605)
T ss_dssp             HHHHTTTSEEEEHHHHHHHHHHHHHHHHHHHHHCCCGGGCCEEEECCSHHHHHHHHHHHHHHHTTTCCHHHHHHTEEEEE
T ss_pred             HHHhccCCCeeCcccchHHHHHHHHHHHHHHHhCCChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhhhhCeEEEEE
Confidence            4677777766755444                  57899999999999999999999998    796      6999999


Q ss_pred             CCcc
Q 020565           63 DRVV   66 (324)
Q Consensus        63 ~d~v   66 (324)
                      ..-+
T Consensus       362 ~~Gl  365 (605)
T 1o0s_A          362 IDGL  365 (605)
T ss_dssp             TTEE
T ss_pred             CCCc
Confidence            8544

>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A

Probab=90.47  E-value=0.36  Score=44.05  Aligned_cols=32  Identities=6%  Similarity=0.038  Sum_probs=26.5

Q ss_pred             cEEEEc-CchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565           33 HILVCG-MKGTVAEFCKNIVLAGVGSLTLMDDR   64 (324)
Q Consensus        33 ~VliiG-~g~lGsei~k~L~~~Gv~~i~lvD~d   64 (324)
                      +|+|.| .|.+|+.+++.|...|.-+++.+|.+
T Consensus         2 ~VlVtGatG~iG~~l~~~L~~~g~~~v~~~d~~   34 (369)
T 3st7_A            2 NIVITGAKGFVGKNLKADLTSTTDHHIFEVHRQ   34 (369)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHCCCEEEECCTT
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCCEEEEECCC
Confidence            699999 58899999999999997456666553

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=90.46  E-value=0.23  Score=45.36  Aligned_cols=35  Identities=6%  Similarity=0.097  Sum_probs=31.5

Q ss_pred             HHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565           28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        28 ~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      .|..++|.|||+|.+|..+++.|...|.. ++++|.
T Consensus       161 ~l~g~~vgIIG~G~iG~~vA~~l~~~G~~-V~~~dr  195 (333)
T 3ba1_A          161 KFSGKRVGIIGLGRIGLAVAERAEAFDCP-ISYFSR  195 (333)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHTTTCC-EEEECS
T ss_pred             ccCCCEEEEECCCHHHHHHHHHHHHCCCE-EEEECC
Confidence            57888999999999999999999999974 888876

>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A*

Probab=90.46  E-value=1  Score=40.52  Aligned_cols=31  Identities=10%  Similarity=0.090  Sum_probs=27.2

Q ss_pred             cEEEEcC-chhHHHHHHHHHHhCC-CcEEEEcC
Q 020565           33 HILVCGM-KGTVAEFCKNIVLAGV-GSLTLMDD   63 (324)
Q Consensus        33 ~VliiG~-g~lGsei~k~L~~~Gv-~~i~lvD~   63 (324)
                      ||+|+|+ |.+|+.++..|+..|. .++.++|.
T Consensus         2 KI~V~GaaG~vG~~l~~~L~~~~~~~el~L~Di   34 (313)
T 1hye_A            2 KVTIIGASGRVGSATALLLAKEPFMKDLVLIGR   34 (313)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTCTTCCEEEEEEC
T ss_pred             EEEEECCCChhHHHHHHHHHhCCCCCEEEEEcC
Confidence            7999999 9999999999998886 44888875

>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2

Probab=90.46  E-value=0.48  Score=41.47  Aligned_cols=34  Identities=21%  Similarity=0.359  Sum_probs=29.2

Q ss_pred             HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      +++++++|.|. ||+|.++++.|+..|.. +.++|.
T Consensus         7 l~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r   41 (270)
T 1yde_A            7 YAGKVVVVTGGGRGIGAGIVRAFVNSGAR-VVICDK   41 (270)
T ss_dssp             TTTCEEEEETCSSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeC
Confidence            66788999996 78999999999999975 777765

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=90.45  E-value=0.49  Score=43.47  Aligned_cols=33  Identities=18%  Similarity=0.083  Sum_probs=29.0

Q ss_pred             cCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      ..+|+|+|+|++|..++..+...|..+++.+|.
T Consensus       193 g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~  225 (374)
T 1cdo_A          193 GSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDL  225 (374)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence            468999999999999999999999977888764

>1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A*

Probab=90.43  E-value=0.15  Score=46.77  Aligned_cols=32  Identities=13%  Similarity=0.121  Sum_probs=27.5

Q ss_pred             CcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCC
Q 020565           32 SHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDR   64 (324)
Q Consensus        32 ~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d   64 (324)
                      ++|+|.|+ |.+|+.+++.|+..|. +++++|..
T Consensus        29 k~vlVtGatG~IG~~l~~~L~~~g~-~V~~~~r~   61 (381)
T 1n7h_A           29 KIALITGITGQDGSYLTEFLLGKGY-EVHGLIRR   61 (381)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECC
T ss_pred             CeEEEEcCCchHHHHHHHHHHHCCC-EEEEEecC
Confidence            67999997 8899999999999996 57777753

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=90.43  E-value=0.19  Score=47.31  Aligned_cols=34  Identities=21%  Similarity=0.171  Sum_probs=30.2

Q ss_pred             cCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCc
Q 020565           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV   65 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~   65 (324)
                      ..+|+|||.|..|..+|..|++.|+. ++|+|...
T Consensus        22 ~~~ViIVGaGpaGl~~A~~La~~G~~-V~viE~~~   55 (430)
T 3ihm_A           22 KKRIGIVGAGTAGLHLGLFLRQHDVD-VTVYTDRK   55 (430)
T ss_dssp             -CEEEEECCHHHHHHHHHHHHHTTCE-EEEEESCC
T ss_pred             CCCEEEECCcHHHHHHHHHHHHCCCe-EEEEcCCC
Confidence            36899999999999999999999995 99998764

>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A*

Probab=90.42  E-value=0.5  Score=41.20  Aligned_cols=37  Identities=5%  Similarity=0.037  Sum_probs=27.6

Q ss_pred             HHHHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           26 QRRLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        26 q~~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      +..+++++++|.|. ||+|.++++.|+..|.. ++++|.
T Consensus         6 ~~~~~~k~~lVTGas~gIG~~ia~~l~~~G~~-V~~~~r   43 (276)
T 1mxh_A            6 HEASECPAAVITGGARRIGHSIAVRLHQQGFR-VVVHYR   43 (276)
T ss_dssp             -----CCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             hhccCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeC
Confidence            34577888999996 78999999999999974 777664

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=90.40  E-value=0.23  Score=47.72  Aligned_cols=35  Identities=11%  Similarity=0.146  Sum_probs=31.6

Q ss_pred             HhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565           29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (324)
Q Consensus        29 l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d   64 (324)
                      |..++|+|+|+|++|..+++.|...|. ++.++|.+
T Consensus       263 L~GKtVvVtGaGgIG~aiA~~Laa~GA-~Viv~D~~  297 (488)
T 3ond_A          263 IAGKVAVVAGYGDVGKGCAAALKQAGA-RVIVTEID  297 (488)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSC
T ss_pred             ccCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCC
Confidence            678999999999999999999999998 58888763

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=90.38  E-value=0.23  Score=45.55  Aligned_cols=36  Identities=11%  Similarity=-0.046  Sum_probs=30.9

Q ss_pred             HhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCc
Q 020565           29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV   65 (324)
Q Consensus        29 l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~   65 (324)
                      ++..+|+|||.|..|..+|..|++.|+. ++|+|...
T Consensus         9 m~~~dVvIVGaG~aGl~~A~~L~~~G~~-v~viE~~~   44 (379)
T 3alj_A            9 GKTRRAEVAGGGFAGLTAAIALKQNGWD-VRLHEKSS   44 (379)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHTTCE-EEEECSSS
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHCCCC-EEEEecCC
Confidence            4467899999999999999999999985 99999754

>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X

Probab=90.37  E-value=0.63  Score=42.06  Aligned_cols=23  Identities=4%  Similarity=-0.067  Sum_probs=20.1

Q ss_pred             CcEEEEcCchhHHHHHHHHHHhC
Q 020565           32 SHILVCGMKGTVAEFCKNIVLAG   54 (324)
Q Consensus        32 ~~VliiG~g~lGsei~k~L~~~G   54 (324)
                      -||.|||+|.+|...++.|...+
T Consensus         3 ~rigiiG~G~ig~~~~~~l~~~~   25 (334)
T 3ohs_X            3 LRWGIVSVGLISSDFTAVLQTLP   25 (334)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSC
T ss_pred             cEEEEECchHHHHHHHHHHHhCC
Confidence            47999999999999999987654

>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=90.34  E-value=0.25  Score=42.14  Aligned_cols=35  Identities=14%  Similarity=0.210  Sum_probs=28.8

Q ss_pred             hcCcEEEEcC-chhHHHHHHHHHHhCC-CcEEEEcCC
Q 020565           30 SKSHILVCGM-KGTVAEFCKNIVLAGV-GSLTLMDDR   64 (324)
Q Consensus        30 ~~~~VliiG~-g~lGsei~k~L~~~Gv-~~i~lvD~d   64 (324)
                      +.++|+|.|. |++|.++++.|+..|. .++.++|.+
T Consensus         2 ~~k~vlItGasggiG~~la~~l~~~g~~~~V~~~~r~   38 (250)
T 1yo6_A            2 SPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARD   38 (250)
T ss_dssp             CCSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESS
T ss_pred             CCCEEEEecCCchHHHHHHHHHHhcCCCcEEEEEecC
Confidence            4578999996 7899999999999994 468888764

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=90.32  E-value=0.88  Score=38.63  Aligned_cols=103  Identities=15%  Similarity=0.050  Sum_probs=56.4

Q ss_pred             hcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEe
Q 020565           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVE  109 (324)
Q Consensus        30 ~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~  109 (324)
                      ...+||-+||| .|...+......| .+++.+|.                      .....+.+++++.+..- -+++..
T Consensus        91 ~~~~vLdiG~G-~G~~~~~la~~~~-~~v~~vD~----------------------~~~~~~~a~~~~~~~~~-~~v~~~  145 (235)
T 1jg1_A           91 PGMNILEVGTG-SGWNAALISEIVK-TDVYTIER----------------------IPELVEFAKRNLERAGV-KNVHVI  145 (235)
T ss_dssp             TTCCEEEECCT-TSHHHHHHHHHHC-SCEEEEES----------------------CHHHHHHHHHHHHHTTC-CSEEEE
T ss_pred             CCCEEEEEeCC-cCHHHHHHHHHhC-CEEEEEeC----------------------CHHHHHHHHHHHHHcCC-CCcEEE
Confidence            45689999998 6766665555556 77888876                      44455666666665432 124444


Q ss_pred             eCCCCCCchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEeeecC
Q 020565          110 KGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRD  160 (324)
Q Consensus       110 ~~~~~~~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~~~~G  160 (324)
                      ..+...... .-..||+|+++..-......+.+..+.  .++-++.....+
T Consensus       146 ~~d~~~~~~-~~~~fD~Ii~~~~~~~~~~~~~~~L~p--gG~lvi~~~~~~  193 (235)
T 1jg1_A          146 LGDGSKGFP-PKAPYDVIIVTAGAPKIPEPLIEQLKI--GGKLIIPVGSYH  193 (235)
T ss_dssp             ESCGGGCCG-GGCCEEEEEECSBBSSCCHHHHHTEEE--EEEEEEEECSSS
T ss_pred             ECCcccCCC-CCCCccEEEECCcHHHHHHHHHHhcCC--CcEEEEEEecCC
Confidence            443311111 123589999775432222233344433  455455544433

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=90.32  E-value=0.79  Score=40.65  Aligned_cols=35  Identities=11%  Similarity=0.129  Sum_probs=30.4

Q ss_pred             HHhcCcEEEEcCc---hhHHHHHHHHHHhCCCcEEEEcC
Q 020565           28 RLSKSHILVCGMK---GTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        28 ~l~~~~VliiG~g---~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      .|++++|+|.|.+   |+|.++++.|+..|.. +.++|.
T Consensus        27 ~l~~k~vlVTGasg~~GIG~~ia~~la~~G~~-V~~~~r   64 (296)
T 3k31_A           27 LMEGKKGVIIGVANDKSLAWGIAKAVCAQGAE-VALTYL   64 (296)
T ss_dssp             TTTTCEEEEECCCSTTSHHHHHHHHHHHTTCE-EEEEES
T ss_pred             ccCCCEEEEEeCCCCCCHHHHHHHHHHHCCCE-EEEEeC
Confidence            4678899999985   8999999999999986 777765

>4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major}

Probab=90.31  E-value=0.87  Score=41.73  Aligned_cols=83  Identities=14%  Similarity=0.086  Sum_probs=54.9

Q ss_pred             HHHhcCcEEEEcC-chhHHHHHHHHHHhCC-C-----cEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHh
Q 020565           27 RRLSKSHILVCGM-KGTVAEFCKNIVLAGV-G-----SLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKD   99 (324)
Q Consensus        27 ~~l~~~~VliiG~-g~lGsei~k~L~~~Gv-~-----~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~   99 (324)
                      ..++.-||.|+|+ |++|..++-.|+...+ +     ++.|+|-.                 -   +..+++-.+-.|+.
T Consensus        20 ~s~~~vKVaViGAaG~IG~~la~~la~~~l~~~~~~~eL~L~Di~-----------------~---~~~~~~Gva~DL~~   79 (345)
T 4h7p_A           20 GSMSAVKVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDIE-----------------P---ALKALAGVEAELED   79 (345)
T ss_dssp             --CCCEEEEEESTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCG-----------------G---GHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEECcCcHHHHHHHHHHHhccccCCCCccEEEEECCC-----------------C---ccccchhhhhhhhh
Confidence            3455569999996 9999999999987664 2     68887741                 0   44556666666776


Q ss_pred             hCCCCeEeEeeCCCCCCchhhcCCccEEEEcCC
Q 020565          100 FNPMVRVSVEKGDLSSLDGEFYDKFDVVVVSCC  132 (324)
Q Consensus       100 lnp~v~v~~~~~~~~~~~~~~~~~~diVi~~~~  132 (324)
                      ............   ....+.++++|+||.+..
T Consensus        80 ~~~~~~~~~~~~---~~~~~a~~~advVvi~aG  109 (345)
T 4h7p_A           80 CAFPLLDKVVVT---ADPRVAFDGVAIAIMCGA  109 (345)
T ss_dssp             TTCTTEEEEEEE---SCHHHHTTTCSEEEECCC
T ss_pred             cCccCCCcEEEc---CChHHHhCCCCEEEECCC
Confidence            554443333221   233566899999998875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	324
d1yova1	529	c.111.1.2 (A:6-534) Amyloid beta precursor protein	4e-39
d1yova1	529	c.111.1.2 (A:6-534) Amyloid beta precursor protein	2e-18
d1yovb1	426	c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [T	8e-35
d1jw9b_	247	c.111.1.1 (B:) Molybdenum cofactor biosynthesis pr	8e-18

>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: Amyloid beta precursor protein-binding protein 1, APPBP1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  142 bits (359), Expect = 4e-39
 Identities = 54/253 (21%), Positives = 98/253 (38%), Gaps = 26/253 (10%)

Query: 5   ELTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR 64
           +L +++   YDRQ+R+WG   Q  L  +H+ +     T  E  KN+VL G+GS T++D  
Sbjct: 1   KLLKEQ--KYDRQLRLWGDHGQEALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGN 58

Query: 65  VVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSL---DGEFY 121
            V+ E    NF +    ++  GK  AE   + L++ N  V  S  +    +L   D  F+
Sbjct: 59  QVSGEDAGNNFFLQRS-SI--GKNRAEAAMEFLQELNSDVSGSFVEESPENLLDNDPSFF 115

Query: 122 DKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFVDLQNHKYSKQKIEE 181
            +F VVV +    +T   + +                    G + + ++ H   +   + 
Sbjct: 116 CRFTVVVATQLPESTSLRLADVLWNSQI--PLLICRTYGLVGYMRIIIKEHPVIESHPDN 173

Query: 182 TIE---CQLRYPSFEEAI-SVPWRALPRKASK----LYFALRVLEQFEEAEGRSPGEISI 233
            +E       +P   E   S     + +K       +    + L Q+             
Sbjct: 174 ALEDLRLDKPFPELREHFQSYDLDHMEKKDHSHTPWIVIIAKYLAQWYSETN-------- 225

Query: 234 ADLPAVLKLKKEL 246
             +P   K K++ 
Sbjct: 226 GRIPKTYKEKEDF 238

>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: Amyloid beta precursor protein-binding protein 1, APPBP1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.5 bits (206), Expect = 2e-18
 Identities = 29/113 (25%), Positives = 45/113 (39%), Gaps = 3/113 (2%)

Query: 204 PRKASKLYFALRVLEQFEEAEGRSPGEISIADLPAVLKLK---KELCEANALNASHVTDS 260
           P     LY  LR +++F + +GR PG  +      + KLK       +   L+     D 
Sbjct: 414 PDNEIVLYLMLRAVDRFHKQQGRYPGVSNYQVEEDIGKLKSCLTGFLQEYGLSVMVKDDY 473

Query: 261 LLERLIIGTREFTPVCAVVGGILGQEVIKAISCKGEPLKNFFFFDIMDGKGVV 313
           + E    G  E   + A +GG   QEVIK I+ +     N + +  M      
Sbjct: 474 VHEFCRYGAAEPHTIAAFLGGAAAQEVIKIITKQFVIFNNTYIYSGMSQTSAT 526

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]} Length = 426

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  129 bits (324), Expect = 8e-35
 Identities = 60/308 (19%), Positives = 110/308 (35%), Gaps = 20/308 (6%)

Query: 14  YDRQIRVWGADA-QRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWS 72
           +         ++ Q  L    +LV G  G   E  KN+ L+G   + ++D   +     +
Sbjct: 19  FTHPDFEPSTESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLN 78

Query: 73  ANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEFYDKFDVVVVSCC 132
             FL  P +    G+  AEV  + L D  P   V      +   +  FY +F ++V    
Sbjct: 79  RQFLFRPKDI---GRPKAEVAAEFLNDRVPNCNVVPHFNKIQDFNDTFYRQFHIIVCGLD 135

Query: 133 SVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFVDLQNHKYSKQ------KIEETIECQ 186
           S+  ++ IN     L     +       S     +D     +          +   IEC 
Sbjct: 136 SIIARRWINGMLISLLN---YEDGVLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECT 192

Query: 187 LRYPSFEEAISVPW---RALPRKASKLYFALRVLEQFEEAEGRSPGEISIADLPAVLKLK 243
                +   ++ P     ++PR        +R+L+  +E        +   D   +  + 
Sbjct: 193 --LELYPPQVNFPMCTIASMPRLPEHCIEYVRMLQWPKEQPFGEGVPLDGDDPEHIQWIF 250

Query: 244 KELCE-ANALNASHVTDSLLERLIIGT-REFTPVCAVVGGILGQEVIKAISCKGEPLKNF 301
           ++  E A+  N   VT  L + ++           AV+  +   EV K  +    PL N+
Sbjct: 251 QKSLERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFKIATSAYIPLNNY 310

Query: 302 FFFDIMDG 309
             F+ +DG
Sbjct: 311 LVFNDVDG 318

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} Length = 247

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

 Score = 79.2 bits (194), Expect = 8e-18
 Identities = 40/188 (21%), Positives = 67/188 (35%), Gaps = 6/188 (3%)

Query: 5   ELTEQETALYDRQIRVW--GADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMD 62
           EL++QE   Y+RQI +     D Q  L  S +L+ G+ G      + +  AGVG+LTL+D
Sbjct: 2   ELSDQEMLRYNRQIILRGFDFDGQEALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLD 61

Query: 63  DRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSSLDGEFYD 122
              V+        L         G+   E   D+L   NP + ++     L   +     
Sbjct: 62  FDTVSLSNLQRQTLHSDATV---GQPKVESARDALTRINPHIAITPVNALLDDAELAALI 118

Query: 123 KFDVVVVSCC-SVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIFVDLQNHKYSKQKIEE 181
               +V+ C  +V  +  +N  C      +        +    +F         +     
Sbjct: 119 AEHDLVLDCTDNVAVRNQLNAGCFAAKVPLVSGAAIRMEGQITVFTYQDGEPCYRCLSRL 178

Query: 182 TIECQLRY 189
             E  L  
Sbjct: 179 FGENALTC 186

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	324
d1yova1	529	Amyloid beta precursor protein-binding protein 1,	100.0
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	100.0
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	98.21
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	97.97
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	97.93
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	97.79
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	97.63
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	97.57
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	97.57
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	97.57
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	97.53
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	97.51
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	97.5
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	97.48
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	97.4
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	97.39
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	97.32
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	97.31
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	97.2
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	97.19
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	97.17
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	97.15
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	97.12
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	97.08
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	97.08
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	97.03
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	97.0
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	96.99
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	96.98
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	96.96
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	96.93
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	96.93
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	96.87
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	96.87
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	96.86
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	96.8
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	96.78
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	96.76
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	96.71
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	96.69
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	96.68
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	96.62
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	96.62
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	96.58
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	96.56
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	96.55
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	96.54
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	96.49
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	96.44
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	96.4
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	96.36
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	96.36
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	96.3
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	96.29
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	96.28
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	96.22
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	96.14
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	96.14
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	96.11
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	96.08
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	96.05
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	96.0
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	95.97
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	95.96
d2vapa1	209	Cell-division protein FtsZ {Archaeon Methanococcus	95.95
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	95.94
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	95.81
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	95.77
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	95.77
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	95.74
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	95.7
d1w5fa1	194	Cell-division protein FtsZ {Thermotoga maritima [T	95.69
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	95.53
d1ofua1	198	Cell-division protein FtsZ {Pseudomonas aeruginosa	95.53
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	95.53
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	95.46
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	95.39
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	95.27
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	95.23
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	95.21
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	95.21
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	95.17
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	95.17
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	95.17
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	95.16
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	95.16
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	95.15
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	95.13
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	95.12
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	95.08
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	95.06
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	95.06
d1up7a1	162	6-phospho-beta-glucosidase {Thermotoga maritima [T	95.05
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	94.95
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	94.95
d1j5pa4	132	Hypothetical protein TM1643 {Thermotoga maritima [	94.84
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	94.8
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	94.8
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	94.78
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	94.75
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	94.73
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	94.72
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	94.61
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	94.56
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	94.55
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	94.55
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	94.52
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	94.51
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	94.47
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	94.41
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	94.33
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	94.32
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	94.28
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	94.27
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	94.2
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	94.19
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	94.17
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	94.15
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	94.09
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	94.09
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	94.08
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	94.03
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	94.01
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	94.01
d1rq2a1	198	Cell-division protein FtsZ {Mycobacterium tubercul	94.0
d1s6ya1	169	6-phospho-beta-glucosidase {Bacillus stearothermop	93.98
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	93.94
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	93.92
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	93.88
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	93.88
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	93.87
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	93.82
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	93.8
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	93.75
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	93.73
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	93.73
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	93.72
d1z45a2	347	Uridine diphosphogalactose-4-epimerase (UDP-galact	93.69
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	93.63
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	93.62
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	93.62
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	93.59
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	93.55
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	93.54
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	93.47
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	93.45
d1kewa_	361	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	93.39
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	93.38
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	93.32
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	93.26
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	93.25
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	93.25
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	93.23
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	93.01
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	93.0
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	93.0
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	92.91
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	92.89
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	92.74
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	92.73
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	92.7
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	92.69
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	92.66
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	92.6
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	92.58
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	92.55
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	92.55
d1diha1	162	Dihydrodipicolinate reductase {Escherichia coli [T	92.51
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	92.47
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	92.46
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	92.41
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	92.34
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	92.24
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	92.22
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	92.15
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	92.13
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	92.13
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	92.02
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	91.95
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	91.88
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	91.88
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	91.83
d1r6da_	322	dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces	91.61
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	91.49
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	91.36
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	91.32
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	91.19
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	91.15
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	91.15
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	91.12
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	90.95
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	90.88
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	90.84
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	90.82
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	90.75
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	90.75
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	90.63
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	90.59
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	90.52
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	90.47
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	90.43
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	90.15
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	90.1
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	89.92
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	89.91
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	89.87
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	89.72
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	89.66
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	89.52
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	89.52
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	89.37
d1x7da_	340	Ornithine cyclodeaminase {Pseudomonas putida [TaxI	89.35
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	89.33
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	89.32
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	89.3
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	89.26
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	89.19
d1e7wa_	284	Dihydropteridin reductase (pteridine reductase) {L	89.17
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	89.11
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	89.11
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	89.09
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	89.06
d1gq2a1	298	Mitochondrial NAD(P)-dependent malic enzyme {Domes	88.91
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	88.76
d2gz1a1	154	Aspartate beta-semialdehyde dehydrogenase {Strepto	88.66
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	88.65
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	88.62
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	88.62
d1pj3a1	294	Mitochondrial NAD(P)-dependent malic enzyme {Human	88.58
d1o0sa1	308	Mitochondrial NAD(P)-dependent malic enzyme {Pig r	88.43
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	88.24
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	88.02
d1omoa_	320	Archaeal alanine dehydrogenase {Archaeon Archaeogl	87.98
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	87.95
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	87.93
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	87.92
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	87.89
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	87.79
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	87.79
d1oc2a_	346	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	87.73
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	87.59
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	87.45
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	87.4
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	87.35
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	87.33
d1n2sa_	298	dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S	87.26
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	87.25
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	87.19
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	87.18
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	87.13
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	87.05
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	86.91
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	86.88
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	86.84
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	86.81
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	86.81
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	86.78
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	86.71
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	86.7
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	86.51
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	86.44
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	86.19
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	86.16
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	86.12
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	85.75
d1bgva1	255	Glutamate dehydrogenase {Clostridium symbiosum [Ta	85.62
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	85.42
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	85.29
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	84.75
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	84.74
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	84.73
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	84.6
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	84.35
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	84.29
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	84.03
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	83.89
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	83.85
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	83.8
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	83.75
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	83.71
d1hwxa1	293	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	83.61
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	83.52
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	83.5
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	83.31
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	83.07
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	83.02
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	82.94
d1eq2a_	307	ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric	82.85
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	82.38
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	82.37
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	82.28
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	82.25
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	81.73
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	81.4
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	81.25
d2fr1a1	259	Erythromycin synthase, eryAI, 1st ketoreductase mo	81.06
d1lc0a1	172	Biliverdin reductase {Rat (Rattus norvegicus) [Tax	80.88
d2csua1	129	Acetate-CoA ligase alpha chain, AcdA, N-terminal d	80.77
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	80.75
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	80.6
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	80.47
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	80.42
d1np3a2	182	Class I ketol-acid reductoisomerase (KARI) {Pseudo	80.33
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	80.26
d1feca1	240	Trypanothione reductase {Crithidia fasciculata [Ta	80.08

>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: Amyloid beta precursor protein-binding protein 1, APPBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.1e-60  Score=461.62  Aligned_cols=301  Identities=25%  Similarity=0.400  Sum_probs=253.5

Q ss_pred             HHHHhHHHHHhhhHHHHHHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccH
Q 020565           10 ETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTI   89 (324)
Q Consensus        10 e~~ry~Rqi~l~g~~~q~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~k   89 (324)
                      +.+|||||+|+||.+||++|++++|+|+|+||+|+|++|||+++|||+|+|+|+|.|+.+||+||||++++|+   |++|
T Consensus         4 ke~rYdRQlrlwG~~gQ~~L~~s~VlvvG~gglG~Ei~knLvl~GVg~itivD~d~v~~sdL~rqf~~~~~di---Gk~k   80 (529)
T d1yova1           4 KEQKYDRQLRLWGDHGQEALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSI---GKNR   80 (529)
T ss_dssp             HHHHTHHHHHHHHHHHHHHHHHCEEEECCCSHHHHHHHHHHHTTTCSEEEEECCSBCCHHHHHHCTTCCGGGT---TSBH
T ss_pred             hhhhhhHHHHhhhHHHHHHHhCCCEEEECCCHHHHHHHHHHHHhcCCEEEEEcCCcCChhhcCchhcCChhhC---CCHH
Confidence            4579999999999999999999999999999999999999999999999999999999999999999999999   9999


Q ss_pred             HHHHHHHHHhhCCCCeEeEeeCCCCC---CchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEeeecCceEEEE
Q 020565           90 AEVCCDSLKDFNPMVRVSVEKGDLSS---LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCGEIF  166 (324)
Q Consensus        90 a~~~~~~l~~lnp~v~v~~~~~~~~~---~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~~~~G~~g~v~  166 (324)
                      |++++++|+++||+|+++.+...+.+   ...++++++|+||+|.++.+.+..++++|++  +++|||.+++.|++|++|
T Consensus        81 a~~~~~~L~~lNp~v~i~~~~~~~~~~~~~~~~~~~~~dvVv~~~~~~~~~~~l~~~c~~--~~ip~i~~~~~G~~G~v~  158 (529)
T d1yova1          81 AEAAMEFLQELNSDVSGSFVEESPENLLDNDPSFFCRFTVVVATQLPESTSLRLADVLWN--SQIPLLICRTYGLVGYMR  158 (529)
T ss_dssp             HHHHHHHHHTTCTTSBCCEESSCHHHHHHSCGGGGGGCSEEEEESCCHHHHHHHHHHHHH--HTCCEEEEEEETTEEEEE
T ss_pred             HHHHHHHHHHhCCCCcEEEEcCCchhhhhhHHHHhcCCCEEEECCCCHHHHHHHHHHHHH--cCCCEEEEeccCCEEEEE
Confidence            99999999999999999887766543   3467899999999999999999999999999  999999999999999999


Q ss_pred             EecCceeeeecCccccc-----------------------------------------------------ccc-------
Q 020565          167 VDLQNHKYSKQKIEETI-----------------------------------------------------ECQ-------  186 (324)
Q Consensus       167 ~d~~~~~~~~~~~~~~~-----------------------------------------------------~~~-------  186 (324)
                      +|+|+|.+.+.+++...                                                     |+.       
T Consensus       159 ~~~~~~~~~e~~p~~~~~dlrl~~p~p~l~~~~~~~d~~~~~~~~~~~vP~~vil~~~l~~~~~~~~g~~p~~~~ek~~~  238 (529)
T d1yova1         159 IIIKEHPVIESHPDNALEDLRLDKPFPELREHFQSYDLDHMEKKDHSHTPWIVIIAKYLAQWYSETNGRIPKTYKEKEDF  238 (529)
T ss_dssp             EECSCEEESCCCCSSCCCCCCSSSCCHHHHHHHHTCCSSSSCHHHHTTSCHHHHHHHHHHHHHHHTCCCCCCTTTHHHHH
T ss_pred             EEeCCceEEecCCCCCCCccccCCCcHHHHHHHhhcCcccCCccccCcCchHHHHHHHHHHHHHhcCCCCCCcHHHHHHH
Confidence            99999887765433100                                                     000       


Q ss_pred             -------c---------CCCChHHhhccC--------------------------------cc---------------cC
Q 020565          187 -------L---------RYPSFEEAISVP--------------------------------WR---------------AL  203 (324)
Q Consensus       187 -------~---------~f~~~~e~l~~~--------------------------------~~---------------~~  203 (324)
                             +         ...+++||++..                                |.               .+
T Consensus       239 k~~i~~~~~~~~~~~~~~eeNf~EA~~~~~~~~~~~~ip~~i~~ll~~~~~~~~~~~s~~Fw~l~~alk~F~~~~~~g~l  318 (529)
T d1yova1         239 RDLIRQGILKNENGAPEDEENFEEAIKNVNTALNTTQIPSSIEDIFNDDRCINITKQTPSFWILARALKEFVAKEGQGNL  318 (529)
T ss_dssp             HHHHHTSSCBCTTSSBCCCHHHHHHHHHHHHHSSCCSCCHHHHHHHTSHHHHSCCSSCCHHHHHHHHHHHHHHTTTSSSC
T ss_pred             HHHHHhhhhcccccCCCccccHHHHHHHHHHhhCCCCCCHHHHHHhcCcccccCCCCCccHHHHHHHHHHHHHhcCCCCC
Confidence                   0         000111111000                                00               00


Q ss_pred             --------------------------------------------------------------------------------
Q 020565          204 --------------------------------------------------------------------------------  203 (324)
Q Consensus       204 --------------------------------------------------------------------------------  203 (324)
                                                                                                      
T Consensus       319 Pl~g~lPDm~s~t~~Yi~Lq~iY~~Ka~~D~~~~~~~v~~~l~~~~~~~~~i~~~~i~~F~kn~~~l~~~~~~~l~~e~~  398 (529)
T d1yova1         319 PVRGTIPDMIADSGKYIKLQNVYREKAKKDAAAVGNHVAKLLQSIGQAPESISEKELKLLCSNSAFLRVVRCRSLAEEYG  398 (529)
T ss_dssp             CCCCCCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSSSSCHHHHHHHHHTTTSCEEECCCCHHHHHC
T ss_pred             CCCCCCCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHhhhhhcceeccCchHhhhc
Confidence                                                                                            


Q ss_pred             ---------------CCchhHHHHHHHHHHHHHHHhCCCCCCCC---cccHHHHHHHHHHHHHHcCCCCCCCCHHHHHHH
Q 020565          204 ---------------PRKASKLYFALRVLEQFEEAEGRSPGEIS---IADLPAVLKLKKELCEANALNASHVTDSLLERL  265 (324)
Q Consensus       204 ---------------~~~~~~~~~~~~~l~~f~~~~~~~p~~~~---~~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  265 (324)
                                     +.+...+|++++++++|.++|+++|+..+   .+|..++...++++++..+.+ ..+++++++++
T Consensus       399 ~~~~~~~~l~~~~~~~~~~~~l~~~~~a~~~f~~~~~r~P~~~~~~~~~d~~~l~~~~~~~~~~~~~~-~~~~~~~i~e~  477 (529)
T d1yova1         399 LDTINKDEIISSMDNPDNEIVLYLMLRAVDRFHKQQGRYPGVSNYQVEEDIGKLKSCLTGFLQEYGLS-VMVKDDYVHEF  477 (529)
T ss_dssp             TTTSCHHHHHHHTTSTTSTHHHHHHHHHHHHHHHHSSSCTTSSTTTHHHHHHHHHHHHHHHHHHHTCC-CCCCHHHHHHH
T ss_pred             ccccchhHHhhhhhcccchHHHHHHHHHHHHHHHHhCCCCCCccchhHhHHHHHHHHHHHHhhhcccc-ccchHHHHHHH
Confidence                           00112488999999999999999998776   446667777788888888874 45889999999


Q ss_pred             Hh-cCCcccchhHHHHHHHHHHHHHHHhcCCCcccceEEEeccCCceeEEec
Q 020565          266 II-GTREFTPVCAVVGGILGQEVIKAISCKGEPLKNFFFFDIMDGKGVVEDV  316 (324)
Q Consensus       266 ~~-~~~~l~p~~av~Ggi~aqEviK~itg~~~pl~~~~~~D~~~~~~~~~~~  316 (324)
                      ++ ++++++|++|++||++||||||+|||||.|++|||+||+.++++.++.|
T Consensus       478 ~r~~~~el~~vaA~~GGiaaQEviK~iT~qy~Pi~n~~i~dgi~~~~~~~~l  529 (529)
T d1yova1         478 CRYGAAEPHTIAAFLGGAAAQEVIKIITKQFVIFNNTYIYSGMSQTSATFQL  529 (529)
T ss_dssp             HHTTTCCCHHHHHHHHHHHHHHHHHHHHTCSBCCSSEEEEETTTTEEEEECC
T ss_pred             HHHcCCcccHHHHHHHHHHHHHHHHHHhcCeeccCCcEEEecCCCeeeeEeC
Confidence            99 9999999999999999999999999999999999999999999988764

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=3.4e-48  Score=345.50  Aligned_cols=236  Identities=23%  Similarity=0.314  Sum_probs=198.6

Q ss_pred             CCCCHHHHHHhHHHHHhh--hHHHHHHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCC
Q 020565            4 EELTEQETALYDRQIRVW--GADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDE   81 (324)
Q Consensus         4 ~~l~~~e~~ry~Rqi~l~--g~~~q~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~d   81 (324)
                      .+||++|.+||+||++||  |.++|+||++++|+|+|+||+||+++++|+++|||+|+|+|+|.|+.+||+||++|+++|
T Consensus         1 ~~l~~~e~~ry~Rqi~l~~~g~~~Q~kL~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~Ve~sNL~RQ~l~~~~d   80 (247)
T d1jw9b_           1 AELSDQEMLRYNRQIILRGFDFDGQEALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDAT   80 (247)
T ss_dssp             CCCCHHHHHHTHHHHTSTTTHHHHHHHHHHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGG
T ss_pred             CCCCHHHHHHhhceeccccCCHHHHHHHhCCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCcccchhhhhhhccccHhh
Confidence            369999999999999995  899999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCccHHHHHHHHHHhhCCCCeEeEeeCCCCC-CchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEeeecC
Q 020565           82 NVYGGKTIAEVCCDSLKDFNPMVRVSVEKGDLSS-LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRD  160 (324)
Q Consensus        82 i~~~G~~ka~~~~~~l~~lnp~v~v~~~~~~~~~-~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~~~~G  160 (324)
                      +   |++|+++++++|+++||+++++.+...+.. ....++..+|+||+++|+...+.++|++|++  +++|+|.++..|
T Consensus        81 i---G~~K~~~a~~~l~~~np~~~i~~~~~~~~~~~~~~~~~~~divid~~d~~~~~~~in~~~~~--~~ip~i~g~~~~  155 (247)
T d1jw9b_          81 V---GQPKVESARDALTRINPHIAITPVNALLDDAELAALIAEHDLVLDCTDNVAVRNQLNAGCFA--AKVPLVSGAAIR  155 (247)
T ss_dssp             T---TSBHHHHHHHHHHHHCTTSEEEEECSCCCHHHHHHHHHTSSEEEECCSSHHHHHHHHHHHHH--HTCCEEEEEEEB
T ss_pred             c---CchHHHHHHHHHHHhhcccchhhhhhhhhhccccccccccceeeeccchhhhhhhHHHHHHH--hCCCcccccccc
Confidence            9   999999999999999999999999887765 4566778999999999999999999999999  999999999999


Q ss_pred             ceEEEEEecCceeeeecCcccccccccCCCChHHhhccCcccCCCchhHHHHHHHHHHHHHHHhCCCCCCCCcccHHHHH
Q 020565          161 SCGEIFVDLQNHKYSKQKIEETIECQLRYPSFEEAISVPWRALPRKASKLYFALRVLEQFEEAEGRSPGEISIADLPAVL  240 (324)
Q Consensus       161 ~~g~v~~d~~~~~~~~~~~~~~~~~~~~f~~~~e~l~~~~~~~~~~~~~~~~~~~~l~~f~~~~~~~p~~~~~~d~~~~~  240 (324)
                      +.|++.....    ..     ..+|.                            .++.      ...|..          
T Consensus       156 ~~g~~~~~~~----~~-----~~~c~----------------------------~c~~------~~~~~~----------  182 (247)
T d1jw9b_         156 MEGQITVFTY----QD-----GEPCY----------------------------RCLS------RLFGEN----------  182 (247)
T ss_dssp             TEEEEEEECC----CT-----TCCCT----------------------------HHHH------TTCCC-----------
T ss_pred             cccceEEEee----cC-----Ccccc----------------------------cccc------cccccc----------
Confidence            9999874211    11     11220                            0100      001100          


Q ss_pred             HHHHHHHHHcCCCCCCCCHHHHHHHHhcCCcccchhHHHHHHHHHHHHHHHhcCCCcccc-eEEEeccCCceeEEecCCC
Q 020565          241 KLKKELCEANALNASHVTDSLLERLIIGTREFTPVCAVVGGILGQEVIKAISCKGEPLKN-FFFFDIMDGKGVVEDVSSP  319 (324)
Q Consensus       241 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~p~~av~Ggi~aqEviK~itg~~~pl~~-~~~~D~~~~~~~~~~~~~~  319 (324)
                         ...+...|                   .++|+++++|+++|+|+||+|+|.+.|+.+ ++.||..+++.+.+.+.+.
T Consensus       183 ---~~~~~~~g-------------------~~~p~~~~v~~~~a~e~ik~l~g~~~~~~~~~~~~d~~~~~~~~~~~~~~  240 (247)
T d1jw9b_         183 ---ALTCVEAG-------------------VMAPLIGVIGSLQAMEAIKMLAGYGKPASGKIVMYDAMTCQFREMKLMRN  240 (247)
T ss_dssp             ---------CC-------------------BCHHHHHHHHHHHHHHHHHHHHTCSCCCBSEEEEEETTTTEEEEEECCCC
T ss_pred             ---cCCcccCC-------------------cccccchhHHHHHHHHHHHHHhcCCCcCcCcEEEEECCCCEEEEEecCcC
Confidence               00122233                   399999999999999999999999999876 8899999999888888653

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.3e-43  Score=335.48  Aligned_cols=289  Identities=20%  Similarity=0.285  Sum_probs=216.9

Q ss_pred             hHHHHHhhhH-HHHHHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHH
Q 020565           14 YDRQIRVWGA-DAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEV   92 (324)
Q Consensus        14 y~Rqi~l~g~-~~q~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~   92 (324)
                      |+|+...-|. ..|.+|+++||+|||+||+|||++|||+++|||+|+|+|.|.|+.+||+|||||+++|+   |++|+++
T Consensus        19 ~~~~~~~~~~e~~~~~l~~~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~D~Ve~sNL~RQflf~~~di---G~~Ka~~   95 (426)
T d1yovb1          19 FTHPDFEPSTESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDI---GRPKAEV   95 (426)
T ss_dssp             TCCTTCCCCSSHHHHHHHHCCEEEECSSTTHHHHHHHHHTTTCCCEEEECCCBCCGGGGGTCTTCCGGGT---TSBHHHH
T ss_pred             CcCcccccChHHHHHHHhcCeEEEECCCHHHHHHHHHHHHcCCCeEEEEECCCcchhhhcccccCChhHc---CcHHHHH
Confidence            3444333454 45888999999999999999999999999999999999999999999999999999999   9999999


Q ss_pred             HHHHHHhhCCCCeEeEeeCCCCCCchhhcCCccEEEEcCCCHHHHHHHHHHHHhc----------cCCccEEEeeecCce
Q 020565           93 CCDSLKDFNPMVRVSVEKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKL----------SKRVAFYTVDCRDSC  162 (324)
Q Consensus        93 ~~~~l~~lnp~v~v~~~~~~~~~~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~----------~~~ip~i~~~~~G~~  162 (324)
                      ++++++++||++++..+...+.+...+++++||+||+|.|+.++|.++|+.|..+          ..++|+|.+++.|+.
T Consensus        96 a~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~DlVi~~~Dn~~aR~~in~~c~~l~k~~~~~~~~~~~iPlI~gg~~G~~  175 (426)
T d1yovb1          96 AAEFLNDRVPNCNVVPHFNKIQDFNDTFYRQFHIIVCGLDSIIARRWINGMLISLLNYEDGVLDPSSIVPLIDGGTEGFK  175 (426)
T ss_dssp             HHHHHHHHSTTCCCEEECSCGGGBCHHHHTTCSEEEECCSCHHHHHHHHHHHHHTCCEETTEECGGGCCCEEEEEEETTE
T ss_pred             HHHHHHhhCCCCceEeeeccccchHHHHHHhcchheeccCcHHHHHHHHHHHHHhhcccccccccccCCceEEeEEeeeE
Confidence            9999999999999999999888777889999999999999999999999999742          157899999999999


Q ss_pred             EEEEEecCceeeeecCccccccc-ccCCCChHHhhccCc---ccCCCchhHHHHHHHHHHHHHHHhCCCC-CCCCcccHH
Q 020565          163 GEIFVDLQNHKYSKQKIEETIEC-QLRYPSFEEAISVPW---RALPRKASKLYFALRVLEQFEEAEGRSP-GEISIADLP  237 (324)
Q Consensus       163 g~v~~d~~~~~~~~~~~~~~~~~-~~~f~~~~e~l~~~~---~~~~~~~~~~~~~~~~l~~f~~~~~~~p-~~~~~~d~~  237 (324)
                      |++++.++..+          +| .|.++.+.+.-+.|+   .+.|+.+.......+.+ .|.+.+...+ ...+.+|.+
T Consensus       176 G~~~vi~p~~t----------~Cy~C~~~~~p~~~~~p~CTi~~~P~~~~hci~~ak~l-~~~~~~~~~~~~~~d~dd~~  244 (426)
T d1yovb1         176 GNARVILPGMT----------ACIECTLELYPPQVNFPMCTIASMPRLPEHCIEYVRML-QWPKEQPFGEGVPLDGDDPE  244 (426)
T ss_dssp             EEEEEECTTTS----------CCGGGGGGGSCCCCCCCHHHHHHCCCSHHHHHHHHHHT-HHHHSCTTSTTCCCCTTCHH
T ss_pred             EEEEEECCCCC----------CCcCcCCCCCCCCCCCCcccccCCCCCchheeehhhhh-cccccccccccCCCCCCCHH
Confidence            99998765321          23 222222111111222   12333332222112222 2333222211 122334444


Q ss_pred             HH---HHHHHHHHHHcCCCCCCCCHHHHHHHHh-cCCcccchhHHHHHHHHHHHHHHHhcCCCcccceEEEeccCCc-ee
Q 020565          238 AV---LKLKKELCEANALNASHVTDSLLERLII-GTREFTPVCAVVGGILGQEVIKAISCKGEPLKNFFFFDIMDGK-GV  312 (324)
Q Consensus       238 ~~---~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~l~p~~av~Ggi~aqEviK~itg~~~pl~~~~~~D~~~~~-~~  312 (324)
                      .+   .+.+......+++  ..++..+++.++. .-|.++|++|++||+++||+||++|+++.|++|+++|++..+. ..
T Consensus       245 ~i~~i~~~a~~ra~~~~I--~~~~~~~~k~ia~nIIPaiatTnAIVagl~~~E~iK~lt~~~~p~~n~~~~~~~~~~~~~  322 (426)
T d1yovb1         245 HIQWIFQKSLERASQYNI--RGVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFKIATSAYIPLNNYLVFNDVDGLYTY  322 (426)
T ss_dssp             HHHHHHHHHHHHHHHTTC--CCCCHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHCSSCCCCSEEEEECSBSCEEE
T ss_pred             HHHHHHHHHHHHHHhcCC--CCccHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhcCCccccceEEEecCCCceEe
Confidence            33   3445555566666  4578888999998 9999999999999999999999999999999999999988874 34


Q ss_pred             EEecCC
Q 020565          313 VEDVSS  318 (324)
Q Consensus       313 ~~~~~~  318 (324)
                      .+.+.+
T Consensus       323 ~~~~~k  328 (426)
T d1yovb1         323 TFEAER  328 (426)
T ss_dssp             EECCCC
T ss_pred             eeeccC
Confidence            444443

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.21  E-value=4.3e-06  Score=62.89  Aligned_cols=92  Identities=12%  Similarity=0.193  Sum_probs=68.2

Q ss_pred             HHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEe
Q 020565           28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS  107 (324)
Q Consensus        28 ~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~  107 (324)
                      .|++.+|+|+|.|.+|..-++.|..+|.. +++++++.-..                            ++.+-..-.++
T Consensus         9 ~l~~k~vlVvG~G~va~~ka~~ll~~ga~-v~v~~~~~~~~----------------------------~~~~~~~~~i~   59 (113)
T d1pjqa1           9 QLRDRDCLIVGGGDVAERKARLLLEAGAR-LTVNALTFIPQ----------------------------FTVWANEGMLT   59 (113)
T ss_dssp             CCBTCEEEEECCSHHHHHHHHHHHHTTBE-EEEEESSCCHH----------------------------HHHHHTTTSCE
T ss_pred             EeCCCEEEEECCCHHHHHHHHHHHHCCCe-EEEEeccCChH----------------------------HHHHHhcCCce
Confidence            36789999999999999999999999975 89987632111                            11111112333


Q ss_pred             EeeCCCCCCchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccE
Q 020565          108 VEKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAF  153 (324)
Q Consensus       108 ~~~~~~~~~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~  153 (324)
                      .....+.   .+.+.++++|+.++++.+....+.+.|++  .++|+
T Consensus        60 ~~~~~~~---~~dl~~~~lv~~at~d~~~n~~i~~~a~~--~~ilV  100 (113)
T d1pjqa1          60 LVEGPFD---ETLLDSCWLAIAATDDDTVNQRVSDAAES--RRIFC  100 (113)
T ss_dssp             EEESSCC---GGGGTTCSEEEECCSCHHHHHHHHHHHHH--TTCEE
T ss_pred             eeccCCC---HHHhCCCcEEeecCCCHHHHHHHHHHHHH--cCCEE
Confidence            4443333   45678999999999999999999999999  88864

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=97.97  E-value=1.3e-05  Score=64.90  Aligned_cols=101  Identities=15%  Similarity=0.081  Sum_probs=64.1

Q ss_pred             cCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHH--HhhCCCCeEeE
Q 020565           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSL--KDFNPMVRVSV  108 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l--~~lnp~v~v~~  108 (324)
                      +++|.|||+|.+|+.+|..|++.|. +++++|.+.                      .+.+.+.+.-  ....|..+...
T Consensus         1 sk~iaIiGaG~~G~~~A~~l~~~G~-~V~~~~r~~----------------------~~~~~~~~~~~~~~~~~~~~~~~   57 (184)
T d1bg6a2           1 SKTYAVLGLGNGGHAFAAYLALKGQ-SVLAWDIDA----------------------QRIKEIQDRGAIIAEGPGLAGTA   57 (184)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCH----------------------HHHHHHHHHTSEEEESSSCCEEE
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCC-EEEEEECCH----------------------HHHHHHHHcCCCchhhhhhhhhh
Confidence            5789999999999999999999997 588888732                      2222222110  01112222222


Q ss_pred             eeCCCCCCchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEE
Q 020565          109 EKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFY  154 (324)
Q Consensus       109 ~~~~~~~~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i  154 (324)
                      ..........+.++++|+||.++-....+..+.++...+..+.+++
T Consensus        58 ~~~~~~~~~~e~~~~aD~iii~v~~~~~~~~~~~i~~~l~~~~~iv  103 (184)
T d1bg6a2          58 HPDLLTSDIGLAVKDADVILIVVPAIHHASIAANIASYISEGQLII  103 (184)
T ss_dssp             CCSEEESCHHHHHTTCSEEEECSCGGGHHHHHHHHGGGCCTTCEEE
T ss_pred             hhhhhhhhhHhHhcCCCEEEEEEchhHHHHHHHHhhhccCCCCEEE
Confidence            2222223346778899999999988777777777665544455444

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=97.93  E-value=1.7e-05  Score=63.35  Aligned_cols=87  Identities=20%  Similarity=0.159  Sum_probs=61.4

Q ss_pred             HHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEe
Q 020565           28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS  107 (324)
Q Consensus        28 ~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~  107 (324)
                      .|++++|+|||+|.+|..++++|...|+++++++..                      ...|++.+++.+.     ..+.
T Consensus        21 ~l~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nR----------------------t~~ka~~l~~~~~-----~~~~   73 (159)
T d1gpja2          21 SLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANR----------------------TYERAVELARDLG-----GEAV   73 (159)
T ss_dssp             CCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECS----------------------SHHHHHHHHHHHT-----CEEC
T ss_pred             CcccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcC----------------------cHHHHHHHHHhhh-----cccc
Confidence            478999999999999999999999999999999643                      3447766666542     2221


Q ss_pred             EeeCCCCCCchhhcCCccEEEEcCCCHH---HHHHHHHHHHh
Q 020565          108 VEKGDLSSLDGEFYDKFDVVVVSCCSVT---TKKLINEKCRK  146 (324)
Q Consensus       108 ~~~~~~~~~~~~~~~~~diVi~~~~~~~---~~~~l~~~~~~  146 (324)
                          .++ ...+.+.++|+||.|+..+.   ....+.....+
T Consensus        74 ----~~~-~~~~~l~~~Divi~atss~~~ii~~~~i~~~~~~  110 (159)
T d1gpja2          74 ----RFD-ELVDHLARSDVVVSATAAPHPVIHVDDVREALRK  110 (159)
T ss_dssp             ----CGG-GHHHHHHTCSEEEECCSSSSCCBCHHHHHHHHHH
T ss_pred             ----cch-hHHHHhccCCEEEEecCCCCccccHhhhHHHHHh
Confidence                122 23456789999999997543   34455555443

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=97.79  E-value=1.1e-05  Score=65.95  Aligned_cols=85  Identities=13%  Similarity=0.129  Sum_probs=58.2

Q ss_pred             HHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEe
Q 020565           28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS  107 (324)
Q Consensus        28 ~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~  107 (324)
                      .+++++|+|+|+||.|..++..|...|+.++++++.+              .+     -..|+...++++..-.+.. +.
T Consensus        15 ~l~~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~--------------~~-----~~~~~~~l~~~~~~~~~~~-~~   74 (182)
T d1vi2a1          15 DIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRR--------------DE-----FFDKALAFAQRVNENTDCV-VT   74 (182)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECS--------------ST-----THHHHHHHHHHHHHHSSCE-EE
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHhhcCCceEeeeccc--------------hH-----HHHHHHHHHHHHHhhcCcc-eE
Confidence            3688999999999999999999999999999998762              11     2235666666666555433 22


Q ss_pred             EeeCCCCCCchhhcCCccEEEEcCC
Q 020565          108 VEKGDLSSLDGEFYDKFDVVVVSCC  132 (324)
Q Consensus       108 ~~~~~~~~~~~~~~~~~diVi~~~~  132 (324)
                      .....-.+...+.+..+|+||+|+-
T Consensus        75 ~~~~~~~~~~~~~~~~~diiIN~Tp   99 (182)
T d1vi2a1          75 VTDLADQQAFAEALASADILTNGTK   99 (182)
T ss_dssp             EEETTCHHHHHHHHHTCSEEEECSS
T ss_pred             eeecccccchhhhhcccceeccccC
Confidence            2211111122344678999999975

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.63  E-value=0.00024  Score=54.24  Aligned_cols=89  Identities=15%  Similarity=0.156  Sum_probs=62.0

Q ss_pred             cEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEeeCC
Q 020565           33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGD  112 (324)
Q Consensus        33 ~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~~~  112 (324)
                      +|+|+|+|.+|..+++.|...|.. ++++|.|                      +.+++.+.    +..   .+.++..+
T Consensus         2 ~IvI~G~G~~G~~la~~L~~~g~~-v~vid~d----------------------~~~~~~~~----~~~---~~~vi~Gd   51 (132)
T d1lssa_           2 YIIIAGIGRVGYTLAKSLSEKGHD-IVLIDID----------------------KDICKKAS----AEI---DALVINGD   51 (132)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCE-EEEEESC----------------------HHHHHHHH----HHC---SSEEEESC
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCC-cceecCC----------------------hhhhhhhh----hhh---hhhhccCc
Confidence            799999999999999999999975 8999882                      22333222    211   12233333


Q ss_pred             CCC---CchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccE
Q 020565          113 LSS---LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAF  153 (324)
Q Consensus       113 ~~~---~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~  153 (324)
                      ...   .....++++|.++.++.+.+....+...+++  .+.+-
T Consensus        52 ~~~~~~l~~~~i~~a~~vv~~t~~d~~N~~~~~~~k~--~~~~~   93 (132)
T d1lssa_          52 CTKIKTLEDAGIEDADMYIAVTGKEEVNLMSSLLAKS--YGINK   93 (132)
T ss_dssp             TTSHHHHHHTTTTTCSEEEECCSCHHHHHHHHHHHHH--TTCCC
T ss_pred             ccchhhhhhcChhhhhhhcccCCcHHHHHHHHHHHHH--cCCce
Confidence            332   2234468899999999998888888888888  65553

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.57  E-value=8.1e-05  Score=58.42  Aligned_cols=113  Identities=13%  Similarity=0.099  Sum_probs=62.7

Q ss_pred             HHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCcccc-ccCCCCcccCCCCcccCCccHHHHHHHHHHh---hCCC
Q 020565           28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTE-EAWSANFLIPPDENVYGGKTIAEVCCDSLKD---FNPM  103 (324)
Q Consensus        28 ~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~-~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~---lnp~  103 (324)
                      +|++++|+|||.|.+|.+-++.|..+|. ++++++++.-+. ..+..........    .. ..+.-...+.+   ....
T Consensus        10 ~l~gkrvLViGgG~va~~ka~~Ll~~GA-~VtVvap~~~~~l~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~   83 (150)
T d1kyqa1          10 QLKDKRILLIGGGEVGLTRLYKLMPTGC-KLTLVSPDLHKSIIPKFGKFIQNKDQ----PD-YREDAKRFINPNWDPTKN   83 (150)
T ss_dssp             CCTTCEEEEEEESHHHHHHHHHHGGGTC-EEEEEEEEECTTHHHHHCGGGC----------------CEEECTTCCTTSC
T ss_pred             eeCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCCCHHHHHHHHhccchhhh----hh-hhhhhhhhcchhhhhccc
Confidence            4789999999999999999999999997 599997653221 1111110000000    00 00000000000   0000


Q ss_pred             CeEeEeeCCCCCC---chhhcCCccEEEEcCCCHHHHHHHHHHHHh
Q 020565          104 VRVSVEKGDLSSL---DGEFYDKFDVVVVSCCSVTTKKLINEKCRK  146 (324)
Q Consensus       104 v~v~~~~~~~~~~---~~~~~~~~diVi~~~~~~~~~~~l~~~~~~  146 (324)
                      -.++.....+...   .......+++|+.|+++++....|.+.|+.
T Consensus        84 ~~~~~i~~~~~~~~l~~~~~~~~~~lVi~at~d~~~n~~i~~~a~~  129 (150)
T d1kyqa1          84 EIYEYIRSDFKDEYLDLENENDAWYIIMTCIPDHPESARIYHLCKE  129 (150)
T ss_dssp             CCSEEECSSCCGGGGCCSSTTCCEEEEEECCSCHHHHHHHHHHHHH
T ss_pred             cceEEEecccchhhhcccccccceEEEEeecCCHHHHHHHHHHHHH
Confidence            1223333333221   122245789999999999999999999976

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.57  E-value=7.5e-05  Score=59.42  Aligned_cols=111  Identities=17%  Similarity=0.142  Sum_probs=68.8

Q ss_pred             CcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEeeC
Q 020565           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKG  111 (324)
Q Consensus        32 ~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~~  111 (324)
                      .+|.+||+|-+|+.+|++|+..|. ++.++|.+.-..+++...           |........+.+    ..+.+-...-
T Consensus         2 ~kIg~IGlG~MG~~iA~~L~~~g~-~v~~~d~~~~~~~~~~~~-----------~~~~~~~~~e~~----~~~diii~~v   65 (162)
T d3cuma2           2 KQIAFIGLGHMGAPMATNLLKAGY-LLNVFDLVQSAVDGLVAA-----------GASAARSARDAV----QGADVVISML   65 (162)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTC-EEEEECSSHHHHHHHHHT-----------TCEECSSHHHHH----TSCSEEEECC
T ss_pred             CEEEEEEEHHHHHHHHHHHHHCCC-eEEEEECchhhhhhhhhh-----------hccccchhhhhc----cccCeeeecc
Confidence            369999999999999999999998 488888754443333221           111111111222    2222222111


Q ss_pred             CCC----------CCchhhcCCccEEEEcCC-CHHHHHHHHHHHHhccCCccEEEeeecC
Q 020565          112 DLS----------SLDGEFYDKFDVVVVSCC-SVTTKKLINEKCRKLSKRVAFYTVDCRD  160 (324)
Q Consensus       112 ~~~----------~~~~~~~~~~diVi~~~~-~~~~~~~l~~~~~~~~~~ip~i~~~~~G  160 (324)
                      ...          ......+..-++||+++. +++....+.+.+++  +++.|+.+...|
T Consensus        66 ~~~~~~~~v~~~~~~~~~~l~~g~iiid~st~~p~~~~~~~~~~~~--~gi~~~dapv~G  123 (162)
T d3cuma2          66 PASQHVEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARE--RGLAMLDAPVSG  123 (162)
T ss_dssp             SCHHHHHHHHHSTTCHHHHSCTTCEEEECSCCCHHHHHHHHHHHHH--TTCEEEECCEES
T ss_pred             cchhhHHHHHhccccccccCCCCCEEEECCCCCHHHHHHHHHHHHH--CCCcEEeccccc
Confidence            100          011223445578887764 78888999999999  999999988777

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=97.57  E-value=7.7e-05  Score=59.75  Aligned_cols=34  Identities=15%  Similarity=0.289  Sum_probs=31.4

Q ss_pred             hcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        30 ~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      ++++|+|+|+||.+..++..|...|+++|+|+..
T Consensus        16 ~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR   49 (167)
T d1npya1          16 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYAR   49 (167)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecc
Confidence            5789999999999999999999999999999744

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=97.53  E-value=0.00013  Score=52.44  Aligned_cols=90  Identities=17%  Similarity=0.185  Sum_probs=59.0

Q ss_pred             HhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeE
Q 020565           29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV  108 (324)
Q Consensus        29 l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~  108 (324)
                      +++++|+|+|+|..|..+|+.|...|.. ++++|...-..                 .+          .++...+.+..
T Consensus         3 ~~~K~v~ViGlG~sG~s~a~~L~~~g~~-v~~~D~~~~~~-----------------~~----------~~~~~~~~~~~   54 (93)
T d2jfga1           3 YQGKNVVIIGLGLTGLSCVDFFLARGVT-PRVMDTRMTPP-----------------GL----------DKLPEAVERHT   54 (93)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHHHTTCC-CEEEESSSSCT-----------------TG----------GGSCTTSCEEE
T ss_pred             cCCCEEEEEeECHHHHHHHHHHHHCCCE-EEEeeCCcCch-----------------hH----------HHHhhccceee
Confidence            6789999999999999999999999976 88888732211                 00          11122222221


Q ss_pred             eeCCCCCCchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEE
Q 020565          109 EKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFY  154 (324)
Q Consensus       109 ~~~~~~~~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i  154 (324)
                      .     ......+.++|+||.+..=+... .+-..+++  +++|+|
T Consensus        55 ~-----~~~~~~~~~~d~vi~SPGi~~~~-~~~~~a~~--~gi~ii   92 (93)
T d2jfga1          55 G-----SLNDEWLMAADLIVASPGIALAH-PSLSAAAD--AGIEIV   92 (93)
T ss_dssp             S-----BCCHHHHHHCSEEEECTTSCTTS-HHHHHHHH--TTCEEE
T ss_pred             c-----ccchhhhccCCEEEECCCCCCCC-HHHHHHHH--cCCCeE
Confidence            1     12345567899999987633333 34455667  889986

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=97.51  E-value=5.8e-05  Score=59.76  Aligned_cols=76  Identities=17%  Similarity=0.106  Sum_probs=53.9

Q ss_pred             hcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCC----Ce
Q 020565           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPM----VR  105 (324)
Q Consensus        30 ~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~----v~  105 (324)
                      ++.||.|||+|.+|+.++..|+..|+.++.|+|-                      .+.|++..+.-++...+.    ..
T Consensus         6 k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~----------------------~~~~~~g~a~Dl~~~~~~~~~~~~   63 (154)
T d1pzga1           6 RRKKVAMIGSGMIGGTMGYLCALRELADVVLYDV----------------------VKGMPEGKALDLSHVTSVVDTNVS   63 (154)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECS----------------------SSSHHHHHHHHHHHHHHHTTCCCC
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEe----------------------ccccchhHHHHHhhhccccCCeeE
Confidence            5689999999999999999999999999999984                      444566666666553221    12


Q ss_pred             EeEeeCCCCCCchhhcCCccEEEEcCC
Q 020565          106 VSVEKGDLSSLDGEFYDKFDVVVVSCC  132 (324)
Q Consensus       106 v~~~~~~~~~~~~~~~~~~diVi~~~~  132 (324)
                      +...     ...++.+++.|+||.+..
T Consensus        64 ~~~~-----~~~~~~~~~adiVvitag   85 (154)
T d1pzga1          64 VRAE-----YSYEAALTGADCVIVTAG   85 (154)
T ss_dssp             EEEE-----CSHHHHHTTCSEEEECCS
T ss_pred             Eecc-----CchhhhhcCCCeEEEecc
Confidence            2111     122456789999998774

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.50  E-value=0.00015  Score=57.65  Aligned_cols=94  Identities=9%  Similarity=-0.064  Sum_probs=60.0

Q ss_pred             cCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEee
Q 020565           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEK  110 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~  110 (324)
                      +++|+|+|+|.+|..+|++|+..|. +++++|.                      ...|++.+++    -.+...+....
T Consensus         2 ~K~IliiGaG~~G~~~a~~L~~~g~-~V~v~dr----------------------~~~~a~~l~~----~~~~~~~~~~~   54 (182)
T d1e5qa1           2 TKSVLMLGSGFVTRPTLDVLTDSGI-KVTVACR----------------------TLESAKKLSA----GVQHSTPISLD   54 (182)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTTC-EEEEEES----------------------CHHHHHHHHT----TCTTEEEEECC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC-EEEEEEC----------------------ChHHHHHHHh----ccccccccccc
Confidence            5789999999999999999999998 5999987                      4445554333    33333332222


Q ss_pred             CCCCCCchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEE
Q 020565          111 GDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFY  154 (324)
Q Consensus       111 ~~~~~~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i  154 (324)
                      ..........+...|+++.+...... ..+...|.+  .+..++
T Consensus        55 ~~~~~~~~~~i~~~~~~i~~~~~~~~-~~~~~~~~~--~~~~~~   95 (182)
T d1e5qa1          55 VNDDAALDAEVAKHDLVISLIPYTFH-ATVIKSAIR--QKKHVV   95 (182)
T ss_dssp             TTCHHHHHHHHTTSSEEEECSCGGGH-HHHHHHHHH--HTCEEE
T ss_pred             ccchhhhHhhhhccceeEeeccchhh-hHHHHHHHh--hcccee
Confidence            22212335567788888887755433 344456655  454444

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=97.48  E-value=3.4e-05  Score=62.38  Aligned_cols=121  Identities=12%  Similarity=0.021  Sum_probs=72.0

Q ss_pred             cCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEee
Q 020565           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEK  110 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~  110 (324)
                      +++|.+||+|.+|+.+|++|...|.. ++++|.+.-..+.+..+..-.....   |-...+    .+.+.-....+....
T Consensus         2 ~~nIg~IGlG~MG~~mA~~L~~~G~~-V~v~dr~~~~~~~l~~~~~~~~~~~---~a~~~~----~~~~~~~~~~~ii~~   73 (176)
T d2pgda2           2 QADIALIGLAVMGQNLILNMNDHGFV-VCAFNRTVSKVDDFLANEAKGTKVL---GAHSLE----EMVSKLKKPRRIILL   73 (176)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCC-EEEECSSTHHHHHHHHTTTTTSSCE---ECSSHH----HHHHHBCSSCEEEEC
T ss_pred             CCcEEEEeEhHHHHHHHHHHHHCCCe-EEEEcCCHHHHHHHHHhcccccccc---chhhhh----hhhhhhcccceEEEe
Confidence            57899999999999999999999985 8898875543333322211111111   221122    222222222222211


Q ss_pred             CCCCC-------CchhhcCCccEEEEcC-CCHHHHHHHHHHHHhccCCccEEEeeecCc
Q 020565          111 GDLSS-------LDGEFYDKFDVVVVSC-CSVTTKKLINEKCRKLSKRVAFYTVDCRDS  161 (324)
Q Consensus       111 ~~~~~-------~~~~~~~~~diVi~~~-~~~~~~~~l~~~~~~~~~~ip~i~~~~~G~  161 (324)
                      -.-.+       .....++.-++||+++ .++.....+.+.+.+  .++.++.+...|.
T Consensus        74 ~~~~~~v~~v~~~l~~~~~~g~iiid~sT~~~~~~~~~~~~~~~--~g~~~ldapvsGg  130 (176)
T d2pgda2          74 VKAGQAVDNFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKD--KGILFVGSGVSGG  130 (176)
T ss_dssp             SCTTHHHHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHH--TTCEEEEEEEESH
T ss_pred             cCchHHHHHHHHHHHhccccCcEEEecCcchhHHHHHHHHHHHh--cCCceeccccccC
Confidence            11111       0122345567888775 467777888899989  9999999887763

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=97.40  E-value=0.0001  Score=59.07  Aligned_cols=74  Identities=14%  Similarity=0.151  Sum_probs=53.7

Q ss_pred             HhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeE
Q 020565           29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV  108 (324)
Q Consensus        29 l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~  108 (324)
                      +++++|+|+|+||.+..++..|...|+. |+|+..                      -..|++.+++.+.+.++   ++.
T Consensus        16 ~~~k~vlIlGaGGaarai~~al~~~g~~-i~I~nR----------------------t~~ka~~l~~~~~~~~~---~~~   69 (170)
T d1nyta1          16 RPGLRILLIGAGGASRGVLLPLLSLDCA-VTITNR----------------------TVSRAEELAKLFAHTGS---IQA   69 (170)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCE-EEEECS----------------------SHHHHHHHHHHTGGGSS---EEE
T ss_pred             CCCCEEEEECCcHHHHHHHHHhcccceE-EEeccc----------------------hHHHHHHHHHHHhhccc---ccc
Confidence            5678999999999999999999999984 988743                      45577777777776653   222


Q ss_pred             eeCCCCCCchhhcCCccEEEEcCCC
Q 020565          109 EKGDLSSLDGEFYDKFDVVVVSCCS  133 (324)
Q Consensus       109 ~~~~~~~~~~~~~~~~diVi~~~~~  133 (324)
                      .  .+.   +.....+|+||+|+--
T Consensus        70 ~--~~~---~~~~~~~dliIN~Tp~   89 (170)
T d1nyta1          70 L--SMD---ELEGHEFDLIINATSS   89 (170)
T ss_dssp             C--CSG---GGTTCCCSEEEECCSC
T ss_pred             c--ccc---cccccccceeeccccc
Confidence            2  111   1223578999999753

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=97.39  E-value=0.00014  Score=57.45  Aligned_cols=94  Identities=12%  Similarity=0.066  Sum_probs=60.2

Q ss_pred             cEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEeeCC
Q 020565           33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGD  112 (324)
Q Consensus        33 ~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~~~  112 (324)
                      ||+|+|+|++|+.++..|+.+|.. +++++.+.-....+..   ...+     +                .......   
T Consensus         2 kI~IiGaG~iG~~~a~~L~~~G~~-V~~~~r~~~~~~~~~~---~~~~-----~----------------~~~~~~~---   53 (167)
T d1ks9a2           2 KITVLGCGALGQLWLTALCKQGHE-VQGWLRVPQPYCSVNL---VETD-----G----------------SIFNESL---   53 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCE-EEEECSSCCSEEEEEE---ECTT-----S----------------CEEEEEE---
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCc-eEEEEcCHHHhhhhcc---ccCC-----c----------------ccccccc---
Confidence            799999999999999999999985 9999875533322211   0000     0                0000111   


Q ss_pred             CCCCchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEE
Q 020565          113 LSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYT  155 (324)
Q Consensus       113 ~~~~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~  155 (324)
                       .....+.+..+|+||.++-...+...+..+...+..+.+++.
T Consensus        54 -~~~~~~~~~~~D~iii~vka~~~~~~~~~l~~~~~~~~~Iv~   95 (167)
T d1ks9a2          54 -TANDPDFLATSDLLLVTLKAWQVSDAVKSLASTLPVTTPILL   95 (167)
T ss_dssp             -EESCHHHHHTCSEEEECSCGGGHHHHHHHHHTTSCTTSCEEE
T ss_pred             -ccchhhhhcccceEEEeecccchHHHHHhhccccCcccEEee
Confidence             112244566899999999988888777777654334554554

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.32  E-value=0.00015  Score=57.49  Aligned_cols=81  Identities=17%  Similarity=0.167  Sum_probs=55.7

Q ss_pred             HHHhcCcEEEEcCchhHHHHHHHHHHhCCC-cEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCe
Q 020565           27 RRLSKSHILVCGMKGTVAEFCKNIVLAGVG-SLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVR  105 (324)
Q Consensus        27 ~~l~~~~VliiG~g~lGsei~k~L~~~Gv~-~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~  105 (324)
                      .++++.||.|||+|.+|+.+|..|+..|.. ++.|+|.                      .+.|++..+.-|...-+...
T Consensus        15 ~~~~~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~----------------------~~~~a~g~alDl~~~~~~~~   72 (159)
T d2ldxa1          15 DKLSRCKITVVGVGDVGMACAISILLKGLADELALVDA----------------------DTDKLRGEALDLQHGSLFLS   72 (159)
T ss_dssp             CCCCCCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECS----------------------CHHHHHHHHHHHHHTTTTCS
T ss_pred             ccCCCCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeC----------------------CchhhhccHHHHhCcchhcC
Confidence            457888999999999999999999999985 6999875                      44456655666665433322


Q ss_pred             EeEeeCCCCCCchhhcCCccEEEEcCC
Q 020565          106 VSVEKGDLSSLDGEFYDKFDVVVVSCC  132 (324)
Q Consensus       106 v~~~~~~~~~~~~~~~~~~diVi~~~~  132 (324)
                      ......   ....+.+++.|+||.+..
T Consensus        73 ~~~~~~---~~d~~~~~~adivvitag   96 (159)
T d2ldxa1          73 TPKIVF---GKDYNVSANSKLVIITAG   96 (159)
T ss_dssp             CCEEEE---ESSGGGGTTEEEEEECCS
T ss_pred             CCeEEe---ccchhhhccccEEEEecc
Confidence            111100   112345689999998764

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=97.31  E-value=0.00068  Score=53.55  Aligned_cols=89  Identities=13%  Similarity=0.061  Sum_probs=56.6

Q ss_pred             cEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEeeCC
Q 020565           33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGD  112 (324)
Q Consensus        33 ~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~~~  112 (324)
                      ||.|||+|.+|+.+|++|...|.. ++.+|.+                      +.+.+    ++++... +.  ...  
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~g~~-V~~~d~~----------------------~~~~~----~a~~~~~-~~--~~~--   49 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRRGHY-LIGVSRQ----------------------QSTCE----KAVERQL-VD--EAG--   49 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCE-EEEECSC----------------------HHHHH----HHHHTTS-CS--EEE--
T ss_pred             EEEEEeecHHHHHHHHHHHHCCCE-EEEEECC----------------------chHHH----HHHHhhc-cc--eee--
Confidence            699999999999999999999974 7777662                      11222    2222221 10  111  


Q ss_pred             CCCCchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEe
Q 020565          113 LSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTV  156 (324)
Q Consensus       113 ~~~~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~  156 (324)
                         ...+.++++|+||.|+-.......++++...+..+..++++
T Consensus        50 ---~~~~~~~~~DiIilavp~~~~~~vl~~l~~~l~~~~iv~~~   90 (165)
T d2f1ka2          50 ---QDLSLLQTAKIIFLCTPIQLILPTLEKLIPHLSPTAIVTDV   90 (165)
T ss_dssp             ---SCGGGGTTCSEEEECSCHHHHHHHHHHHGGGSCTTCEEEEC
T ss_pred             ---eecccccccccccccCcHhhhhhhhhhhhhhcccccceeec
Confidence               11345789999999997666666777776543444444444

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=97.20  E-value=0.00023  Score=55.91  Aligned_cols=74  Identities=22%  Similarity=0.156  Sum_probs=52.5

Q ss_pred             cCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhC----CCCeE
Q 020565           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFN----PMVRV  106 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~ln----p~v~v  106 (324)
                      ++||.|||+|.+|+.++..|++.++.++.|+|-                      ...|++..+.-++...    ..+.+
T Consensus         3 ~~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di----------------------~~~~~~g~a~Dl~~~~~~~~~~~~v   60 (150)
T d1t2da1           3 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDI----------------------VKNMPHGKALDTSHTNVMAYSNCKV   60 (150)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECS----------------------SSSHHHHHHHHHHTHHHHHTCCCCE
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEec----------------------cCCcceeeecchhhhccccCCCcEE
Confidence            478999999999999999999999999999984                      3335555555555432    22233


Q ss_pred             eEeeCCCCCCchhhcCCccEEEEcCC
Q 020565          107 SVEKGDLSSLDGEFYDKFDVVVVSCC  132 (324)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~diVi~~~~  132 (324)
                      ...      ...+.+++.|+||.+..
T Consensus        61 ~~~------~~~~~~~~advvvitag   80 (150)
T d1t2da1          61 SGS------NTYDDLAGADVVIVTAG   80 (150)
T ss_dssp             EEE------CCGGGGTTCSEEEECCS
T ss_pred             Eec------ccccccCCCcEEEEecc
Confidence            221      12355789999998876

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.19  E-value=0.00071  Score=53.64  Aligned_cols=91  Identities=15%  Similarity=0.081  Sum_probs=54.9

Q ss_pred             cEEEEcCchhHHHHHHHHHHhCCC-cEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEeeC
Q 020565           33 HILVCGMKGTVAEFCKNIVLAGVG-SLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKG  111 (324)
Q Consensus        33 ~VliiG~g~lGsei~k~L~~~Gv~-~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~~  111 (324)
                      +|+|||+|-+|+.+|++|...|.. +++.+|.+.-                      .    .+.+++.+--..+   . 
T Consensus         3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~----------------------~----~~~a~~~~~~~~~---~-   52 (171)
T d2g5ca2           3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPE----------------------S----ISKAVDLGIIDEG---T-   52 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHH----------------------H----HHHHHHTTSCSEE---E-
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChH----------------------H----HHHHHHhhcchhh---h-
Confidence            699999999999999999999974 5777776211                      1    1222333211111   1 


Q ss_pred             CCCCCchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEE
Q 020565          112 DLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYT  155 (324)
Q Consensus       112 ~~~~~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~  155 (324)
                        ..........+|+||.|+-.......++++...++.+.-+++
T Consensus        53 --~~~~~~~~~~~dlIila~p~~~~~~vl~~l~~~~~~~~ii~d   94 (171)
T d2g5ca2          53 --TSIAKVEDFSPDFVMLSSPVRTFREIAKKLSYILSEDATVTD   94 (171)
T ss_dssp             --SCGGGGGGTCCSEEEECSCHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred             --hhhhhhhccccccccccCCchhhhhhhhhhhccccccccccc
Confidence              111122234789999988876666677776655334433333

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=97.17  E-value=0.00059  Score=54.04  Aligned_cols=80  Identities=15%  Similarity=0.086  Sum_probs=53.9

Q ss_pred             HHhcCcEEEEcCchhHHHHHHHHHHhCC-CcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeE
Q 020565           28 RLSKSHILVCGMKGTVAEFCKNIVLAGV-GSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRV  106 (324)
Q Consensus        28 ~l~~~~VliiG~g~lGsei~k~L~~~Gv-~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v  106 (324)
                      .+.+.||.|||+|.+|+.++..|+..|+ .++.|+|-                      .+.+++.-+.-|....+....
T Consensus        17 ~~~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~----------------------~~~~a~g~alDl~h~~~~~~~   74 (160)
T d1i0za1          17 TVPNNKITVVGVGQVGMACAISILGKSLADELALVDV----------------------LEDKLKGEMMDLQHGSLFLQT   74 (160)
T ss_dssp             CCCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECS----------------------CHHHHHHHHHHHHHTGGGCCC
T ss_pred             cCCCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEe----------------------ccchhHHHHHHHhccccccCC
Confidence            3567899999999999999999999998 56999886                      444555555555543222211


Q ss_pred             eEeeCCCCCCchhhcCCccEEEEcCC
Q 020565          107 SVEKGDLSSLDGEFYDKFDVVVVSCC  132 (324)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~diVi~~~~  132 (324)
                      ....   .....+.++++|+||.+..
T Consensus        75 ~~~~---~~~d~~~~~~adiVVitAg   97 (160)
T d1i0za1          75 PKIV---ADKDYSVTANSKIVVVTAG   97 (160)
T ss_dssp             SEEE---ECSSGGGGTTCSEEEECCS
T ss_pred             CeEE---eccchhhcccccEEEEecC
Confidence            1110   0112455789999998765

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=97.15  E-value=0.0012  Score=51.35  Aligned_cols=75  Identities=15%  Similarity=0.164  Sum_probs=50.8

Q ss_pred             CcEEEEcCchhHHHHHHHHHHhCC-CcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCC--CeEeE
Q 020565           32 SHILVCGMKGTVAEFCKNIVLAGV-GSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPM--VRVSV  108 (324)
Q Consensus        32 ~~VliiG~g~lGsei~k~L~~~Gv-~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~--v~v~~  108 (324)
                      +||.|||+|.+|+.++..|+..|. .++.|+|-                      .+.|++..+.-|....+.  .....
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di----------------------~~~~~~g~~~Dl~~a~~~~~~~~~~   59 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDA----------------------NEAKVKADQIDFQDAMANLEAHGNI   59 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECS----------------------SHHHHHHHHHHHHHHGGGSSSCCEE
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEec----------------------ccchhhhHHHhhhccccccCCccce
Confidence            689999999999999999999995 67888875                      334554444445543222  22222


Q ss_pred             eeCCCCCCchhhcCCccEEEEcCCC
Q 020565          109 EKGDLSSLDGEFYDKFDVVVVSCCS  133 (324)
Q Consensus       109 ~~~~~~~~~~~~~~~~diVi~~~~~  133 (324)
                      ...+     .+.++++|+||.+...
T Consensus        60 ~~~d-----~~~l~~adiVVitaG~   79 (146)
T d1hyha1          60 VIND-----WAALADADVVISTLGN   79 (146)
T ss_dssp             EESC-----GGGGTTCSEEEECCSC
T ss_pred             eccC-----HHHhccccEEEEeccc
Confidence            2222     3457899999988653

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=97.12  E-value=0.00037  Score=55.85  Aligned_cols=75  Identities=11%  Similarity=0.212  Sum_probs=54.5

Q ss_pred             HHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEe
Q 020565           28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS  107 (324)
Q Consensus        28 ~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~  107 (324)
                      .+++++|+|+|+||.+-.++..|.. |..+++|+..                      ...|++.+++.+....+   +.
T Consensus        15 ~~~~k~vlIlGaGGaarai~~aL~~-~~~~i~I~nR----------------------~~~~a~~l~~~~~~~~~---~~   68 (171)
T d1p77a1          15 LRPNQHVLILGAGGATKGVLLPLLQ-AQQNIVLANR----------------------TFSKTKELAERFQPYGN---IQ   68 (171)
T ss_dssp             CCTTCEEEEECCSHHHHTTHHHHHH-TTCEEEEEES----------------------SHHHHHHHHHHHGGGSC---EE
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHcc-cCceeeeccc----------------------hHHHHHHHHHHHhhccc---cc
Confidence            3677899999999999999999986 6688999744                      44578888888876543   33


Q ss_pred             EeeCCCCCCchhhcCCccEEEEcCCC
Q 020565          108 VEKGDLSSLDGEFYDKFDVVVVSCCS  133 (324)
Q Consensus       108 ~~~~~~~~~~~~~~~~~diVi~~~~~  133 (324)
                      .....     ...+.++|+||.|+-.
T Consensus        69 ~~~~~-----~~~~~~~diiIN~tp~   89 (171)
T d1p77a1          69 AVSMD-----SIPLQTYDLVINATSA   89 (171)
T ss_dssp             EEEGG-----GCCCSCCSEEEECCCC
T ss_pred             hhhhc-----cccccccceeeecccc
Confidence            32211     1125689999999753

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.08  E-value=0.00043  Score=53.98  Aligned_cols=76  Identities=14%  Similarity=0.147  Sum_probs=54.4

Q ss_pred             cEEEEcC-chhHHHHHHHHHHhCC-CcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhC----CCCeE
Q 020565           33 HILVCGM-KGTVAEFCKNIVLAGV-GSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFN----PMVRV  106 (324)
Q Consensus        33 ~VliiG~-g~lGsei~k~L~~~Gv-~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~ln----p~v~v  106 (324)
                      ||.|||+ |.+|+.++..|+..|+ +++.|+|.+                 -   +..|++..+.-|....    +.+++
T Consensus         2 KV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~-----------------~---~~~~~~g~a~Dl~~~~~~~~~~~~~   61 (145)
T d1hyea1           2 KVTIIGASGRVGSATALLLAKEPFMKDLVLIGRE-----------------H---SINKLEGLREDIYDALAGTRSDANI   61 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECG-----------------G---GHHHHHHHHHHHHHHHTTSCCCCEE
T ss_pred             EEEEECCCChHHHHHHHHHHhCCcccccccccch-----------------h---hhHhhhcccccchhcccccccCCcc
Confidence            6999996 9999999999999995 799998872                 1   4457776666666543    33444


Q ss_pred             eEeeCCCCCCchhhcCCccEEEEcCC
Q 020565          107 SVEKGDLSSLDGEFYDKFDVVVVSCC  132 (324)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~diVi~~~~  132 (324)
                      ......    ..+.++++|+||.|..
T Consensus        62 ~~~~~~----d~~~l~~aDvVVitAG   83 (145)
T d1hyea1          62 YVESDE----NLRIIDESDVVIITSG   83 (145)
T ss_dssp             EEEETT----CGGGGTTCSEEEECCS
T ss_pred             ccCCcc----hHHHhccceEEEEecc
Confidence            433321    2356789999998854

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=97.08  E-value=0.00027  Score=56.77  Aligned_cols=91  Identities=13%  Similarity=0.104  Sum_probs=58.1

Q ss_pred             hcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEe
Q 020565           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVE  109 (324)
Q Consensus        30 ~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~  109 (324)
                      ...+|+|+|+|++|...+..+...|..+++.+|.                      ...|.+.+    +++.....+...
T Consensus        27 ~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~----------------------~~~r~~~a----~~lGa~~~i~~~   80 (174)
T d1jqba2          27 MGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGS----------------------RPICVEAA----KFYGATDILNYK   80 (174)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECC----------------------CHHHHHHH----HHHTCSEEECGG
T ss_pred             CCCEEEEEcCCcchhhhhhhhhcccccccccccc----------------------hhhhHHHH----HhhCcccccccc
Confidence            4678999999999999999999999999999887                      33343332    233322222222


Q ss_pred             eCCCCCCchhhc--CCccEEEEcCCCHHHHHHHHHHHHh
Q 020565          110 KGDLSSLDGEFY--DKFDVVVVSCCSVTTKKLINEKCRK  146 (324)
Q Consensus       110 ~~~~~~~~~~~~--~~~diVi~~~~~~~~~~~l~~~~~~  146 (324)
                      +..+.+...+..  ..+|+||+|+.+.......-+.++.
T Consensus        81 ~~~~~~~v~~~t~g~G~D~vid~~g~~~~~~~a~~~~~~  119 (174)
T d1jqba2          81 NGHIEDQVMKLTNGKGVDRVIMAGGGSETLSQAVKMVKP  119 (174)
T ss_dssp             GSCHHHHHHHHTTTSCEEEEEECSSCTTHHHHHHHHEEE
T ss_pred             chhHHHHHHHHhhccCcceEEEccCCHHHHHHHHHHHhc
Confidence            221111111211  3599999999987765555566655

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.03  E-value=0.00084  Score=57.24  Aligned_cols=84  Identities=17%  Similarity=0.076  Sum_probs=64.1

Q ss_pred             HHHHHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCC
Q 020565           25 AQRRLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPM  103 (324)
Q Consensus        25 ~q~~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~  103 (324)
                      ++++|+++.|+|.|+ +|+|.++|+.|++.|.. +.+.|.                      ...+.+.+++.+++.++.
T Consensus         4 ~M~~lk~Kv~lITGas~GIG~aiA~~la~~G~~-Vv~~~r----------------------~~~~l~~~~~~l~~~~~~   60 (257)
T d1xg5a_           4 GMERWRDRLALVTGASGGIGAAVARALVQQGLK-VVGCAR----------------------TVGNIEELAAECKSAGYP   60 (257)
T ss_dssp             TCGGGTTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEES----------------------CHHHHHHHHHHHHHTTCS
T ss_pred             CCCCCCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEEC----------------------CHHHHHHHHHHHHhcCCC
Confidence            356799999999997 68999999999999985 877765                      455788889999998887


Q ss_pred             CeEeEeeCCCCCC---------chhhcCCccEEEEcC
Q 020565          104 VRVSVEKGDLSSL---------DGEFYDKFDVVVVSC  131 (324)
Q Consensus       104 v~v~~~~~~~~~~---------~~~~~~~~diVi~~~  131 (324)
                      .++..+.-++++.         ..+.+...|++|.+.
T Consensus        61 ~~~~~~~~Dls~~~~v~~~v~~~~~~~g~iD~lVnnA   97 (257)
T d1xg5a_          61 GTLIPYRCDLSNEEDILSMFSAIRSQHSGVDICINNA   97 (257)
T ss_dssp             SEEEEEECCTTCHHHHHHHHHHHHHHHCCCSEEEECC
T ss_pred             ceEEEEEccCCCHHHHHHHHHHHHHhcCCCCEEEecc
Confidence            7887777776541         112235677777654

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=97.00  E-value=0.0048  Score=47.77  Aligned_cols=98  Identities=14%  Similarity=0.137  Sum_probs=62.7

Q ss_pred             hcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEe
Q 020565           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVE  109 (324)
Q Consensus        30 ~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~  109 (324)
                      ++-||+|+|+|.+|..+++.|...|.. ++++|.|.                      .+.....+.+.  .+.+.  +.
T Consensus         2 ~knHiII~G~g~~g~~l~~~L~~~~~~-v~vId~d~----------------------~~~~~~~~~~~--~~~~~--vi   54 (153)
T d1id1a_           2 RKDHFIVCGHSILAINTILQLNQRGQN-VTVISNLP----------------------EDDIKQLEQRL--GDNAD--VI   54 (153)
T ss_dssp             CCSCEEEECCSHHHHHHHHHHHHTTCC-EEEEECCC----------------------HHHHHHHHHHH--CTTCE--EE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCC-EEEEeccc----------------------hhHHHHHHHhh--cCCcE--EE
Confidence            356899999999999999999999986 78887632                      11111112221  22233  33


Q ss_pred             eCCCCC---CchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEE
Q 020565          110 KGDLSS---LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFY  154 (324)
Q Consensus       110 ~~~~~~---~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i  154 (324)
                      ..+.+.   ....-++.++.||.++++......+-..++++...++.|
T Consensus        55 ~Gd~~d~~~L~~a~i~~a~~vi~~~~~d~~n~~~~~~~r~~~~~~~ii  102 (153)
T d1id1a_          55 PGDSNDSSVLKKAGIDRCRAILALSDNDADNAFVVLSAKDMSSDVKTV  102 (153)
T ss_dssp             ESCTTSHHHHHHHTTTTCSEEEECSSCHHHHHHHHHHHHHHTSSSCEE
T ss_pred             EccCcchHHHHHhccccCCEEEEccccHHHHHHHHHHHHHhCCCCceE
Confidence            333332   223446789999999998887777777787743344333

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.99  E-value=0.0014  Score=51.08  Aligned_cols=76  Identities=17%  Similarity=0.198  Sum_probs=52.0

Q ss_pred             hcCcEEEEcCchhHHHHHHHHHHhCC-CcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCC--eE
Q 020565           30 SKSHILVCGMKGTVAEFCKNIVLAGV-GSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMV--RV  106 (324)
Q Consensus        30 ~~~~VliiG~g~lGsei~k~L~~~Gv-~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v--~v  106 (324)
                      ..+||.|||+|.+|+.+|..|+..|. .++.|+|-                      .+.|++..+.-|....+..  .+
T Consensus         5 ~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di----------------------~~~~~~g~a~Dl~~~~~~~~~~~   62 (148)
T d1ldna1           5 GGARVVVIGAGFVGASYVFALMNQGIADEIVLIDA----------------------NESKAIGDAMDFNHGKVFAPKPV   62 (148)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECS----------------------SHHHHHHHHHHHHHHTTSSSSCC
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEee----------------------ccccccchhccHhhCccccCCCe
Confidence            46789999999999999999999997 46999885                      3334444455565543322  12


Q ss_pred             eEeeCCCCCCchhhcCCccEEEEcCC
Q 020565          107 SVEKGDLSSLDGEFYDKFDVVVVSCC  132 (324)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~diVi~~~~  132 (324)
                      .....     ..+.++++|+||.+..
T Consensus        63 ~~~~~-----d~~~l~daDvvvitag   83 (148)
T d1ldna1          63 DIWHG-----DYDDCRDADLVVICAG   83 (148)
T ss_dssp             EEEEC-----CGGGTTTCSEEEECCS
T ss_pred             EEEEC-----CHHHhccceeEEEecc
Confidence            22222     2355789999998764

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.98  E-value=0.0012  Score=51.15  Aligned_cols=75  Identities=20%  Similarity=0.169  Sum_probs=49.6

Q ss_pred             CcEEEEcC-chhHHHHHHHHHHhCC-CcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEe
Q 020565           32 SHILVCGM-KGTVAEFCKNIVLAGV-GSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVE  109 (324)
Q Consensus        32 ~~VliiG~-g~lGsei~k~L~~~Gv-~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~  109 (324)
                      +||.|||+ |.+|+.+|..|+..|+ +++.|+|-                      .+.|+++  .-+...-+.......
T Consensus         1 sKv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi----------------------~~~~~~a--~Dl~~~~~~~~~~~~   56 (144)
T d1mlda1           1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDI----------------------AHTPGVA--ADLSHIETRATVKGY   56 (144)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEES----------------------SSHHHHH--HHHTTSSSSCEEEEE
T ss_pred             CeEEEECCCChHHHHHHHHHHhCCccceEEEEec----------------------cccchhh--HHHhhhhhhcCCCeE
Confidence            68999996 9999999999999998 88999875                      2223332  233333333332222


Q ss_pred             eCCCCCCchhhcCCccEEEEcCC
Q 020565          110 KGDLSSLDGEFYDKFDVVVVSCC  132 (324)
Q Consensus       110 ~~~~~~~~~~~~~~~diVi~~~~  132 (324)
                      ..  .....+.++++|+||.+..
T Consensus        57 ~~--~~~~~~~~~~aDivVitag   77 (144)
T d1mlda1          57 LG--PEQLPDCLKGCDVVVIPAG   77 (144)
T ss_dssp             ES--GGGHHHHHTTCSEEEECCS
T ss_pred             Ec--CCChHHHhCCCCEEEECCC
Confidence            11  1223466789999998865

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=96.96  E-value=0.0021  Score=49.84  Aligned_cols=34  Identities=9%  Similarity=0.297  Sum_probs=30.7

Q ss_pred             hcCcEEEEcCchhHHHHHHHHHHhCC-CcEEEEcC
Q 020565           30 SKSHILVCGMKGTVAEFCKNIVLAGV-GSLTLMDD   63 (324)
Q Consensus        30 ~~~~VliiG~g~lGsei~k~L~~~Gv-~~i~lvD~   63 (324)
                      ++.||.|||+|.+|+.++..|+..|+ .++.|+|-
T Consensus         4 ~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~   38 (146)
T d1ez4a1           4 NHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDV   38 (146)
T ss_dssp             TBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeec
Confidence            46799999999999999999999996 58999985

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=96.93  E-value=0.0034  Score=48.40  Aligned_cols=32  Identities=16%  Similarity=0.180  Sum_probs=29.9

Q ss_pred             CcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        32 ~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      .||.|||+|.+|+.+|..|+..|+.++.++|.
T Consensus         2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~   33 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDI   33 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCcceEEEEee
Confidence            58999999999999999999999999999886

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=96.93  E-value=0.0017  Score=49.20  Aligned_cols=33  Identities=15%  Similarity=0.132  Sum_probs=29.5

Q ss_pred             CcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCc
Q 020565           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV   65 (324)
Q Consensus        32 ~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~   65 (324)
                      ++++|+|+|.+|..+++.|...|.. ++++|.|.
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~g~~-vvvid~d~   33 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRMGHE-VLAVDINE   33 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCC-CEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCe-EEEecCcH
Confidence            4789999999999999999999986 88888844

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=96.87  E-value=0.00088  Score=53.61  Aligned_cols=123  Identities=11%  Similarity=0.062  Sum_probs=67.1

Q ss_pred             CcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEeeC
Q 020565           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKG  111 (324)
Q Consensus        32 ~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~~  111 (324)
                      -+|.|||+|-.|+.++++|+..|.. +.++|.+.-....+..........-   ....+......+..+.....+...-.
T Consensus         2 MkIGvIGlG~MG~~ma~~L~~~G~~-V~~~dr~~~~~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (178)
T d1pgja2           2 MDVGVVGLGVMGANLALNIAEKGFK-VAVFNRTYSKSEEFMKANASAPFAG---NLKAFETMEAFAASLKKPRKALILVQ   77 (178)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCC-EEEECSSHHHHHHHHHHTTTSTTGG---GEEECSCHHHHHHHBCSSCEEEECCC
T ss_pred             CEEEEEeehHHHHHHHHHHHHCCCe-EEEEECCHHHHHHHHHcCCcccccc---chhhhhhhhHHHHhcccceEEEEeec
Confidence            4799999999999999999999986 8888874433322211100000000   00000011112222222222221111


Q ss_pred             CCC------CCchhhcCCccEEEEcC-CCHHHHHHHHHHHHhccCCccEEEeeecC
Q 020565          112 DLS------SLDGEFYDKFDVVVVSC-CSVTTKKLINEKCRKLSKRVAFYTVDCRD  160 (324)
Q Consensus       112 ~~~------~~~~~~~~~~diVi~~~-~~~~~~~~l~~~~~~~~~~ip~i~~~~~G  160 (324)
                      .-.      ......+..-+++++++ .+++....+.+.+.+  +++-++.+...|
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~iii~~st~~~~~~~~~~~~l~~--~~~~~ldapv~g  131 (178)
T d1pgja2          78 AGAATDSTIEQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEA--AGLRFLGMGISG  131 (178)
T ss_dssp             CSHHHHHHHHHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHT--TTCEEEEEEEES
T ss_pred             CcchhhhhhhhhhhhccccceecccCccchhHHHHHHHHHhh--cceeEecccccC
Confidence            100      01123345666777776 467777788888888  889888887776

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=96.87  E-value=0.0014  Score=50.83  Aligned_cols=73  Identities=19%  Similarity=0.229  Sum_probs=50.1

Q ss_pred             CcEEEEcCchhHHHHHHHHHHhCCC-cEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhh---CCCCeEe
Q 020565           32 SHILVCGMKGTVAEFCKNIVLAGVG-SLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDF---NPMVRVS  107 (324)
Q Consensus        32 ~~VliiG~g~lGsei~k~L~~~Gv~-~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~l---np~v~v~  107 (324)
                      +||.|||+|.+|+.+|..|+..|+. ++.|+|-                      .+.|++.-+.-|+..   .+...+.
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~----------------------~~~~~~g~a~Dl~~a~~~~~~~~i~   59 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDI----------------------AKERVEAEVLDMQHGSSFYPTVSID   59 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECS----------------------SHHHHHHHHHHHHHTGGGSTTCEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEe----------------------ccccchhHHHHHHhccccCCCceee
Confidence            5899999999999999999999984 6888874                      333444444445543   3333332


Q ss_pred             EeeCCCCCCchhhcCCccEEEEcCC
Q 020565          108 VEKGDLSSLDGEFYDKFDVVVVSCC  132 (324)
Q Consensus       108 ~~~~~~~~~~~~~~~~~diVi~~~~  132 (324)
                      .. .     ..+.+++.|+||.+..
T Consensus        60 ~~-~-----~~~~~~daDvVVitaG   78 (143)
T d1llda1          60 GS-D-----DPEICRDADMVVITAG   78 (143)
T ss_dssp             EE-S-----CGGGGTTCSEEEECCC
T ss_pred             cC-C-----CHHHhhCCcEEEEecc
Confidence            21 1     1344788999998875

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.86  E-value=0.0012  Score=52.01  Aligned_cols=113  Identities=14%  Similarity=0.060  Sum_probs=67.2

Q ss_pred             cEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEeeCC
Q 020565           33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGD  112 (324)
Q Consensus        33 ~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~~~  112 (324)
                      ||.|||+|-+|..+|++|+.+|.. ++++|.+.-..+.+..+           |...+....+.+++  .++-+......
T Consensus         2 kIgiIGlG~MG~~~A~~L~~~G~~-V~~~d~~~~~~~~~~~~-----------~~~~~~~~~e~~~~--~d~ii~~v~~~   67 (161)
T d1vpda2           2 KVGFIGLGIMGKPMSKNLLKAGYS-LVVSDRNPEAIADVIAA-----------GAETASTAKAIAEQ--CDVIITMLPNS   67 (161)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCE-EEEECSCHHHHHHHHHT-----------TCEECSSHHHHHHH--CSEEEECCSSH
T ss_pred             EEEEEehhHHHHHHHHHHHHCCCe-EEEEeCCcchhHHHHHh-----------hhhhcccHHHHHhC--CCeEEEEcCCH
Confidence            699999999999999999999986 88888754433333221           11111111222222  22222222111


Q ss_pred             --CC------CCchhhcCCccEEEEcCC-CHHHHHHHHHHHHhccCCccEEEeeecCc
Q 020565          113 --LS------SLDGEFYDKFDVVVVSCC-SVTTKKLINEKCRKLSKRVAFYTVDCRDS  161 (324)
Q Consensus       113 --~~------~~~~~~~~~~diVi~~~~-~~~~~~~l~~~~~~~~~~ip~i~~~~~G~  161 (324)
                        +.      +.....++.-++||+++. +++....+.+.+++  +++-|+.+...|.
T Consensus        68 ~~v~~v~~~~~~~~~~~~~g~iiid~sT~~p~~~~~~~~~~~~--~g~~~vdapv~gg  123 (161)
T d1vpda2          68 PHVKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISDALKA--KGVEMLDAPVSGG  123 (161)
T ss_dssp             HHHHHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHT--TTCEEEECCEESH
T ss_pred             HHHHHHHhCCcchhhccCCCCEEEECCCCCHHHHHHHHHHHHH--cCCceecccccCC
Confidence              00      011223345567777754 67778888888888  8888888877663

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.80  E-value=0.00069  Score=54.37  Aligned_cols=79  Identities=14%  Similarity=0.076  Sum_probs=53.4

Q ss_pred             HHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEe
Q 020565           28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS  107 (324)
Q Consensus        28 ~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~  107 (324)
                      ++++++|+|+|+||.+..++..|  .+.++|+|+..                      ...|++.+++.+....+.-.+.
T Consensus        15 ~~~~k~vlIlGaGG~arai~~aL--~~~~~i~I~nR----------------------~~~ka~~l~~~~~~~~~~~~~~   70 (177)
T d1nvta1          15 RVKDKNIVIYGAGGAARAVAFEL--AKDNNIIIANR----------------------TVEKAEALAKEIAEKLNKKFGE   70 (177)
T ss_dssp             CCCSCEEEEECCSHHHHHHHHHH--TSSSEEEEECS----------------------SHHHHHHHHHHHHHHHTCCHHH
T ss_pred             CcCCCEEEEECCcHHHHHHHHHH--ccccceeeehh----------------------hhhHHHHHHHHHHHhhchhhhh
Confidence            47999999999999999998887  46668888644                      4458888888887654432211


Q ss_pred             EeeCCCCCCchhhcCCccEEEEcCCC
Q 020565          108 VEKGDLSSLDGEFYDKFDVVVVSCCS  133 (324)
Q Consensus       108 ~~~~~~~~~~~~~~~~~diVi~~~~~  133 (324)
                      ....   ......+..+|+||.|+..
T Consensus        71 ~~~~---~~~~~~~~~~dliIn~tp~   93 (177)
T d1nvta1          71 EVKF---SGLDVDLDGVDIIINATPI   93 (177)
T ss_dssp             HEEE---ECTTCCCTTCCEEEECSCT
T ss_pred             hhhh---hhhhhccchhhhhccCCcc
Confidence            1110   0112335678999998753

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=96.78  E-value=0.0052  Score=47.23  Aligned_cols=72  Identities=17%  Similarity=0.066  Sum_probs=48.4

Q ss_pred             cEEEEcCchhHHHHHHHHHHhCC-CcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHh----hCCCCeEe
Q 020565           33 HILVCGMKGTVAEFCKNIVLAGV-GSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKD----FNPMVRVS  107 (324)
Q Consensus        33 ~VliiG~g~lGsei~k~L~~~Gv-~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~----lnp~v~v~  107 (324)
                      ||.|||+|.+|+.++..|+..|. .++.|+|-                      .+.|++.....+..    .+...++.
T Consensus         2 KI~IIGaG~VG~~la~~l~~~~l~~el~L~Di----------------------~~~~~~~~~~d~~~~~~~~~~~~~i~   59 (142)
T d1guza1           2 KITVIGAGNVGATTAFRLAEKQLARELVLLDV----------------------VEGIPQGKALDMYESGPVGLFDTKVT   59 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECS----------------------SSSHHHHHHHHHHTTHHHHTCCCEEE
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCceEEEecc----------------------ccccchhhhhhhhcccchhcccceEE
Confidence            69999999999999999999996 68999885                      22233333333322    23344554


Q ss_pred             EeeCCCCCCchhhcCCccEEEEcCC
Q 020565          108 VEKGDLSSLDGEFYDKFDVVVVSCC  132 (324)
Q Consensus       108 ~~~~~~~~~~~~~~~~~diVi~~~~  132 (324)
                      .. .     ..+.++++|+||.+..
T Consensus        60 ~~-~-----~~~~~~dadvvvitag   78 (142)
T d1guza1          60 GS-N-----DYADTANSDIVIITAG   78 (142)
T ss_dssp             EE-S-----CGGGGTTCSEEEECCS
T ss_pred             ec-C-----CHHHhcCCeEEEEEEe
Confidence            32 1     1345789999998864

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=96.76  E-value=0.0011  Score=53.35  Aligned_cols=92  Identities=17%  Similarity=0.238  Sum_probs=58.4

Q ss_pred             HhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCcc----HHHHHHHHHHhhCCCC
Q 020565           29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKT----IAEVCCDSLKDFNPMV  104 (324)
Q Consensus        29 l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~----ka~~~~~~l~~lnp~v  104 (324)
                      -+.+||+|||.|..|.+.|..|++.|. +++|+|.+    ..++-++.+...--   ++.    -.+...+.+++.+  +
T Consensus        41 ~~~k~V~IIGaGPAGL~AA~~la~~G~-~Vtl~E~~----~~~GG~l~~~~~~p---~~~~~~~~~~~~~~~~~~~g--V  110 (179)
T d1ps9a3          41 VQKKNLAVVGAGPAGLAFAINAAARGH-QVTLFDAH----SEIGGQFNIAKQIP---GKEEFYETLRYYRRMIEVTG--V  110 (179)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHTTTC-EEEEEESS----SSSCTTHHHHTTST---TCTTHHHHHHHHHHHHHHHT--C
T ss_pred             CCCcEEEEECccHHHHHHHHHHHhhcc-ceEEEecc----CccCceEEEEEeCc---ccchHHHHHHHHHHhhhcCC--e
Confidence            356899999999999999999999997 59999883    33444433221111   222    2344455555554  4


Q ss_pred             eEeEeeCCCCCCchhhcCCccEEEEcCCCH
Q 020565          105 RVSVEKGDLSSLDGEFYDKFDVVVVSCCSV  134 (324)
Q Consensus       105 ~v~~~~~~~~~~~~~~~~~~diVi~~~~~~  134 (324)
                      ++.. ...++   .+...+||.||.++...
T Consensus       111 ~i~l-~~~Vt---~~~~~~~d~vilAtG~~  136 (179)
T d1ps9a3         111 TLKL-NHTVT---ADQLQAFDETILASGIP  136 (179)
T ss_dssp             EEEE-SCCCC---SSSSCCSSEEEECCCEE
T ss_pred             EEEe-CCEEc---ccccccceeEEEeecCC
Confidence            4433 22232   33456899999998753

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.71  E-value=0.0013  Score=53.39  Aligned_cols=82  Identities=12%  Similarity=0.037  Sum_probs=56.8

Q ss_pred             HHHhcCcEEEEc-CchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCe
Q 020565           27 RRLSKSHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVR  105 (324)
Q Consensus        27 ~~l~~~~VliiG-~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~  105 (324)
                      ..|++++|+|.| .||+|.++++.|+..|. +++++|.                      ...|.+.+++.+.+.. .+.
T Consensus        19 ~~l~gK~vlItGasgGIG~~ia~~la~~G~-~V~~~~r----------------------~~~~~~~~~~~~~~~~-~~~   74 (191)
T d1luaa1          19 GSVKGKKAVVLAGTGPVGMRSAALLAGEGA-EVVLCGR----------------------KLDKAQAAADSVNKRF-KVN   74 (191)
T ss_dssp             SCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEES----------------------SHHHHHHHHHHHHHHH-TCC
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHhhcc-chhhccc----------------------chHHHHHHHHHHHhcc-chh
Confidence            457999999999 58999999999999996 5888766                      4446666666666543 223


Q ss_pred             EeEeeCCCCCCchhhcCCccEEEEcCC
Q 020565          106 VSVEKGDLSSLDGEFYDKFDVVVVSCC  132 (324)
Q Consensus       106 v~~~~~~~~~~~~~~~~~~diVi~~~~  132 (324)
                      +...+..-.+...+.+.+.|+||.+..
T Consensus        75 ~~~~d~~~~~~~~~~~~~iDilin~Ag  101 (191)
T d1luaa1          75 VTAAETADDASRAEAVKGAHFVFTAGA  101 (191)
T ss_dssp             CEEEECCSHHHHHHHTTTCSEEEECCC
T ss_pred             hhhhhcccHHHHHHHhcCcCeeeecCc
Confidence            222221111234567889999998764

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.69  E-value=0.0056  Score=47.12  Aligned_cols=72  Identities=13%  Similarity=0.058  Sum_probs=49.7

Q ss_pred             cEEEEcCchhHHHHHHHHHHhCC-CcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhh---CC-CCeEe
Q 020565           33 HILVCGMKGTVAEFCKNIVLAGV-GSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDF---NP-MVRVS  107 (324)
Q Consensus        33 ~VliiG~g~lGsei~k~L~~~Gv-~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~l---np-~v~v~  107 (324)
                      ||.|||+|.+|+.+|..|+..|. .++.|+|-                      .+.|++.-+.-|+..   .+ ..++.
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di----------------------~~~~~~g~alDl~~~~~~~~~~~~i~   59 (142)
T d1ojua1           2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDI----------------------AEDLAVGEAMDLAHAAAGIDKYPKIV   59 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSCCSEEEEECS----------------------SHHHHHHHHHHHHHHHHTTTCCCEEE
T ss_pred             EEEEECcCHHHHHHHHHHHhcCcCceEEEEec----------------------ccchhhHHHHHHhhhccccCCCCccc
Confidence            79999999999999999999887 68999874                      444555444445432   22 23333


Q ss_pred             EeeCCCCCCchhhcCCccEEEEcCC
Q 020565          108 VEKGDLSSLDGEFYDKFDVVVVSCC  132 (324)
Q Consensus       108 ~~~~~~~~~~~~~~~~~diVi~~~~  132 (324)
                      .. .     ..+.+++.|+||.+..
T Consensus        60 ~~-~-----d~~~~~~adiVvitag   78 (142)
T d1ojua1          60 GG-A-----DYSLLKGSEIIVVTAG   78 (142)
T ss_dssp             EE-S-----CGGGGTTCSEEEECCC
T ss_pred             cC-C-----CHHHhccccEEEEecc
Confidence            21 1     1346789999998875

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=96.68  E-value=0.0021  Score=48.20  Aligned_cols=57  Identities=18%  Similarity=0.214  Sum_probs=42.5

Q ss_pred             cCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhC
Q 020565           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFN  101 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~ln  101 (324)
                      .++|+|||.|.+|+|+|..|+..|.. +++++...        ++|.+  -.   ++.-++.+.+.+++..
T Consensus        30 ~~~vvIIGgG~iG~E~A~~l~~~g~~-Vtli~~~~--------~~l~~--~~---~~~~~~~~~~~l~~~G   86 (121)
T d1d7ya2          30 QSRLLIVGGGVIGLELAATARTAGVH-VSLVETQP--------RLMSR--AA---PATLADFVARYHAAQG   86 (121)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCE-EEEEESSS--------STTTT--TS---CHHHHHHHHHHHHTTT
T ss_pred             CCeEEEECcchhHHHHHHHhhcccce-EEEEeecc--------ccccc--cC---CHHHHHHHHHHHHHCC
Confidence            57999999999999999999999975 99988722        12211  12   5556777777777764

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.62  E-value=0.0047  Score=47.44  Aligned_cols=71  Identities=23%  Similarity=0.237  Sum_probs=48.7

Q ss_pred             cEEEEcCchhHHHHHHHHHHhCC-CcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHh---hCCCCeEeE
Q 020565           33 HILVCGMKGTVAEFCKNIVLAGV-GSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKD---FNPMVRVSV  108 (324)
Q Consensus        33 ~VliiG~g~lGsei~k~L~~~Gv-~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~---lnp~v~v~~  108 (324)
                      ||.|||+|.+|+.++..|+..|. .++.|+|-                      .+.|++..+.-+..   ..+.+.+. 
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di----------------------~~~~~~g~~~Dl~~~~~~~~~~~~~-   58 (140)
T d1a5za1           2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDV----------------------DKKRAEGDALDLIHGTPFTRRANIY-   58 (140)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECS----------------------SHHHHHHHHHHHHHHGGGSCCCEEE-
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCCEEEEEec----------------------ccccccchhcccccccccccccccc-
Confidence            79999999999999999999998 47888874                      33344444444444   33333332 


Q ss_pred             eeCCCCCCchhhcCCccEEEEcCC
Q 020565          109 EKGDLSSLDGEFYDKFDVVVVSCC  132 (324)
Q Consensus       109 ~~~~~~~~~~~~~~~~diVi~~~~  132 (324)
                       ..     ..+.++++|+||.+..
T Consensus        59 -~~-----~~~~~~~adivvitag   76 (140)
T d1a5za1          59 -AG-----DYADLKGSDVVIVAAG   76 (140)
T ss_dssp             -EC-----CGGGGTTCSEEEECCC
T ss_pred             -CC-----cHHHhcCCCEEEEecc
Confidence             11     1344789999998864

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=96.62  E-value=0.0065  Score=47.04  Aligned_cols=31  Identities=13%  Similarity=0.163  Sum_probs=27.6

Q ss_pred             cEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565           33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        33 ~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      +|.+||+|-+|..+++.|..+|-.++.+.|.
T Consensus         2 kI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r   32 (152)
T d1yqga2           2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANR   32 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEECS
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCCcEEEEeC
Confidence            6999999999999999999999767777665

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=96.58  E-value=0.0038  Score=48.44  Aligned_cols=30  Identities=10%  Similarity=0.140  Sum_probs=26.0

Q ss_pred             cEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565           33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        33 ~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      ||.|||+|-+|+.++++|...|.. ++++|.
T Consensus         2 kIgiIG~G~mG~~ia~~l~~~g~~-v~~~~~   31 (152)
T d1i36a2           2 RVGFIGFGEVAQTLASRLRSRGVE-VVTSLE   31 (152)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCE-EEECCT
T ss_pred             EEEEEcHHHHHHHHHHHHHHCCCe-EEEEcC
Confidence            699999999999999999999974 566554

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.56  E-value=0.0054  Score=49.03  Aligned_cols=101  Identities=10%  Similarity=0.080  Sum_probs=58.1

Q ss_pred             cEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHh--hCCCCeEeEee
Q 020565           33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKD--FNPMVRVSVEK  110 (324)
Q Consensus        33 ~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~--lnp~v~v~~~~  110 (324)
                      +|.|+|+|..|+.+|..|+..|. +++++..+.                        -+...+.+++  .||........
T Consensus         2 kI~ViGaG~~GtalA~~la~~g~-~V~l~~r~~------------------------~~~~~~~i~~~~~~~~~~~~~~~   56 (180)
T d1txga2           2 IVSILGAGAMGSALSVPLVDNGN-EVRIWGTEF------------------------DTEILKSISAGREHPRLGVKLNG   56 (180)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCC-EEEEECCGG------------------------GHHHHHHHHTTCCBTTTTBCCCS
T ss_pred             EEEEECCCHHHHHHHHHHHHCCC-EEEEEEecc------------------------cHHHHHHHhhhhhhhhhcchhcc
Confidence            79999999999999999999996 477763210                        0011122221  12222111111


Q ss_pred             --CCCCCCchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEeeecC
Q 020565          111 --GDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRD  160 (324)
Q Consensus       111 --~~~~~~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~~~~G  160 (324)
                        ........+.++++|+||.+.-+...+..+.++...+ .+.+++.+ +.|
T Consensus        57 ~~i~~~~~~~~~~~~ad~Ii~avps~~~~~~~~~l~~~l-~~~~ii~~-tkg  106 (180)
T d1txga2          57 VEIFWPEQLEKCLENAEVVLLGVSTDGVLPVMSRILPYL-KDQYIVLI-SKG  106 (180)
T ss_dssp             EEEECGGGHHHHHTTCSEEEECSCGGGHHHHHHHHTTTC-CSCEEEEC-CCS
T ss_pred             ccccccccHHHHHhccchhhcccchhhhHHHHHhhcccc-ccceeccc-ccC
Confidence              1112334667889999999998777666666654331 33344443 344

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.55  E-value=0.00049  Score=54.79  Aligned_cols=90  Identities=14%  Similarity=0.119  Sum_probs=58.4

Q ss_pred             cCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEee
Q 020565           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEK  110 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~  110 (324)
                      ..+|+|+|+|++|.-.+..+...|..+++++|.                      ...|.+.+    +++-.+..+....
T Consensus        27 gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~----------------------~~~rl~~a----~~~Ga~~~~~~~~   80 (171)
T d1pl8a2          27 GHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDL----------------------SATRLSKA----KEIGADLVLQISK   80 (171)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEES----------------------CHHHHHHH----HHTTCSEEEECSS
T ss_pred             CCEEEEECCCccHHHHHHHHHHcCCceEEeccC----------------------CHHHHHHH----HHhCCcccccccc
Confidence            568999999999999999999999999999887                      33344332    2333222222211


Q ss_pred             CCCCCC----chhhcCCccEEEEcCCCHHHHHHHHHHHHh
Q 020565          111 GDLSSL----DGEFYDKFDVVVVSCCSVTTKKLINEKCRK  146 (324)
Q Consensus       111 ~~~~~~----~~~~~~~~diVi~~~~~~~~~~~l~~~~~~  146 (324)
                      ....+.    ....-..+|+||+|+.+.......-+.++.
T Consensus        81 ~~~~~~~~~~~~~~g~g~Dvvid~~G~~~~~~~a~~~~~~  120 (171)
T d1pl8a2          81 ESPQEIARKVEGQLGCKPEVTIECTGAEASIQAGIYATRS  120 (171)
T ss_dssp             CCHHHHHHHHHHHHTSCCSEEEECSCCHHHHHHHHHHSCT
T ss_pred             cccccccccccccCCCCceEEEeccCCchhHHHHHHHhcC
Confidence            111110    011224789999999998776666666666

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=96.54  E-value=0.0067  Score=46.67  Aligned_cols=74  Identities=20%  Similarity=0.165  Sum_probs=50.0

Q ss_pred             CcEEEEc-CchhHHHHHHHHHHhCCC-cEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHh---hCCCCeE
Q 020565           32 SHILVCG-MKGTVAEFCKNIVLAGVG-SLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKD---FNPMVRV  106 (324)
Q Consensus        32 ~~VliiG-~g~lGsei~k~L~~~Gv~-~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~---lnp~v~v  106 (324)
                      +||.|+| +|.+|+.+|..|+..|+. ++.|+|-+.                    ++.+++..+.-|..   .++.+++
T Consensus         1 sKV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~--------------------~~~~~~g~a~Dl~~~~~~~~~~~i   60 (142)
T d1o6za1           1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPD--------------------KEDDTVGQAADTNHGIAYDSNTRV   60 (142)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGG--------------------GHHHHHHHHHHHHHHHTTTCCCEE
T ss_pred             CeEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCC--------------------cccccceeecchhhcccccCCceE
Confidence            6899999 699999999999999986 588887411                    33345544445554   3333443


Q ss_pred             eEeeCCCCCCchhhcCCccEEEEcCC
Q 020565          107 SVEKGDLSSLDGEFYDKFDVVVVSCC  132 (324)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~diVi~~~~  132 (324)
                      ..  .+     .+.++++|+||.+..
T Consensus        61 ~~--~~-----~~~~~~aDiVvitaG   79 (142)
T d1o6za1          61 RQ--GG-----YEDTAGSDVVVITAG   79 (142)
T ss_dssp             EE--CC-----GGGGTTCSEEEECCC
T ss_pred             ee--CC-----HHHhhhcCEEEEecc
Confidence            22  22     344689999998865

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=96.49  E-value=0.0045  Score=47.71  Aligned_cols=33  Identities=21%  Similarity=0.221  Sum_probs=29.5

Q ss_pred             cCcEEEEcCchhHHHHHHHHHHhCCC-cEEEEcC
Q 020565           31 KSHILVCGMKGTVAEFCKNIVLAGVG-SLTLMDD   63 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~~~Gv~-~i~lvD~   63 (324)
                      +.||.|||+|.+|+.++..|+..|.. ++.|+|-
T Consensus         1 r~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~   34 (142)
T d1y6ja1           1 RSKVAIIGAGFVGASAAFTMALRQTANELVLIDV   34 (142)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECC
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEec
Confidence            35899999999999999999999985 6999985

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=96.44  E-value=0.0018  Score=52.54  Aligned_cols=101  Identities=9%  Similarity=0.063  Sum_probs=59.6

Q ss_pred             CcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhC----CCCeEe
Q 020565           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFN----PMVRVS  107 (324)
Q Consensus        32 ~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~ln----p~v~v~  107 (324)
                      +||+|+|+|..|+.+|..|+..|- ++++++.+.-....+                      .+  .+.|    |.+++.
T Consensus         8 ~KI~ViGaG~wGtAlA~~La~~g~-~V~l~~r~~~~~~~i----------------------~~--~~~n~~yl~~~~l~   62 (189)
T d1n1ea2           8 NKAVVFGSGAFGTALAMVLSKKCR-EVCVWHMNEEEVRLV----------------------NE--KRENVLFLKGVQLA   62 (189)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTEE-EEEEECSCHHHHHHH----------------------HH--HTBCTTTSTTCBCC
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCC-eEEEEEecHHHHHHH----------------------hh--cccccccccccccc
Confidence            479999999999999999999986 588876532111111                      11  0112    222211


Q ss_pred             EeeCCCCCCchhhcCCccEEEEcCCCHHHHHHHHHH-------HHhccCCccEEEeeecCc
Q 020565          108 VEKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEK-------CRKLSKRVAFYTVDCRDS  161 (324)
Q Consensus       108 ~~~~~~~~~~~~~~~~~diVi~~~~~~~~~~~l~~~-------~~~~~~~ip~i~~~~~G~  161 (324)
                      . .-..+....+.+++.|+||.+.-+...+..+.++       ...  .+.|++.+ +-|+
T Consensus        63 ~-~i~~t~~l~~a~~~ad~iiiavPs~~~~~~~~~~~~~~~~~~~~--~~~~ii~~-tKGi  119 (189)
T d1n1ea2          63 S-NITFTSDVEKAYNGAEIILFVIPTQFLRGFFEKSGGNLIAYAKE--KQVPVLVC-TKGI  119 (189)
T ss_dssp             T-TEEEESCHHHHHTTCSCEEECSCHHHHHHHHHHHCHHHHHHHHH--HTCCEEEC-CCSC
T ss_pred             c-ccccchhhhhccCCCCEEEEcCcHHHHHHHHHHHHhhhhhhhcc--CCcEEEEE-ECCC
Confidence            0 0011223466788999999999776655555443       223  56676654 3443

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=96.40  E-value=0.0068  Score=47.60  Aligned_cols=93  Identities=13%  Similarity=0.015  Sum_probs=58.2

Q ss_pred             hcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEe
Q 020565           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVE  109 (324)
Q Consensus        30 ~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~  109 (324)
                      ...+|+|+|+|++|..++..+...|. +++.+|.                      ...|.+.    ++++.....+...
T Consensus        26 ~g~~vlV~G~G~vG~~~~~~ak~~Ga-~vi~v~~----------------------~~~r~~~----a~~~ga~~~~~~~   78 (170)
T d1e3ja2          26 LGTTVLVIGAGPIGLVSVLAAKAYGA-FVVCTAR----------------------SPRRLEV----AKNCGADVTLVVD   78 (170)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEES----------------------CHHHHHH----HHHTTCSEEEECC
T ss_pred             CCCEEEEEcccccchhhHhhHhhhcc-cccccch----------------------HHHHHHH----HHHcCCcEEEecc
Confidence            36789999999999999999999997 6888876                      3333332    3334433222211


Q ss_pred             eCCCCC--C----chhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCc
Q 020565          110 KGDLSS--L----DGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRV  151 (324)
Q Consensus       110 ~~~~~~--~----~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~i  151 (324)
                      ...-..  .    ....-..+|+||+|..+.......-+.++.  .+.
T Consensus        79 ~~~~~~~~~~~~~~~~~g~g~D~vid~~g~~~~~~~a~~~~~~--~G~  124 (170)
T d1e3ja2          79 PAKEEESSIIERIRSAIGDLPNVTIDCSGNEKCITIGINITRT--GGT  124 (170)
T ss_dssp             TTTSCHHHHHHHHHHHSSSCCSEEEECSCCHHHHHHHHHHSCT--TCE
T ss_pred             ccccccchhhhhhhcccccCCceeeecCCChHHHHHHHHHHhc--CCc
Confidence            111110  0    011124689999999998776666667766  554

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=96.36  E-value=0.0028  Score=49.48  Aligned_cols=103  Identities=8%  Similarity=0.011  Sum_probs=59.0

Q ss_pred             cEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhh--------CCCC
Q 020565           33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDF--------NPMV  104 (324)
Q Consensus        33 ~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~l--------np~v  104 (324)
                      ||.+||+|-.|+.+++||+..|.  .++++...                      .|++...+.....        +..+
T Consensus         2 kIg~IGlG~MG~~ma~~L~~~g~--~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~   57 (156)
T d2cvza2           2 KVAFIGLGAMGYPMAGHLARRFP--TLVWNRTF----------------------EKALRHQEEFGSEAVPLERVAEARV   57 (156)
T ss_dssp             CEEEECCSTTHHHHHHHHHTTSC--EEEECSST----------------------HHHHHHHHHHCCEECCGGGGGGCSE
T ss_pred             eEEEEeHHHHHHHHHHHHHhCCC--EEEEeCCH----------------------HHHHHHHHHcCCcccccccccceeE
Confidence            79999999999999999998874  44554421                      1222222211100        1111


Q ss_pred             eEeEeeCC--CCCC---chhhcCCccEEEEc-CCCHHHHHHHHHHHHhccCCccEEEeeecCc
Q 020565          105 RVSVEKGD--LSSL---DGEFYDKFDVVVVS-CCSVTTKKLINEKCRKLSKRVAFYTVDCRDS  161 (324)
Q Consensus       105 ~v~~~~~~--~~~~---~~~~~~~~diVi~~-~~~~~~~~~l~~~~~~~~~~ip~i~~~~~G~  161 (324)
                      -+......  +...   .....+.-.++|++ +.+++....+.+.+.+  +++.|+++...|.
T Consensus        58 ~i~~~~~~~~v~~~~~~l~~~~~~~~~iid~sT~~p~~~~~~~~~~~~--~gi~~ldapVsGg  118 (156)
T d2cvza2          58 IFTCLPTTREVYEVAEALYPYLREGTYWVDATSGEPEASRRLAERLRE--KGVTYLDAPVSGG  118 (156)
T ss_dssp             EEECCSSHHHHHHHHHHHTTTCCTTEEEEECSCCCHHHHHHHHHHHHT--TTEEEEECCEESH
T ss_pred             EEecccchhhhhhhhccccccccccccccccccCCHHHHHHHHHHHHH--cCCeEEeccccCc
Confidence            11110000  0000   01122344566655 5678888899999999  9999999988774

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=96.36  E-value=0.0011  Score=53.24  Aligned_cols=33  Identities=6%  Similarity=-0.057  Sum_probs=30.5

Q ss_pred             cCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      ..+|+|+|+|++|..++..+...|..+++++|.
T Consensus        29 G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~   61 (182)
T d1vj0a2          29 GKTVVIQGAGPLGLFGVVIARSLGAENVIVIAG   61 (182)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTBSEEEEEES
T ss_pred             CCEEEEECCCccchhheeccccccccccccccc
Confidence            478999999999999999999999988999887

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=96.30  E-value=0.0092  Score=43.85  Aligned_cols=32  Identities=16%  Similarity=0.174  Sum_probs=29.3

Q ss_pred             cCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      ..+++|+|.|.+|+|+|..|++.|.. +|+++.
T Consensus        21 p~~vvIiGgG~~G~E~A~~l~~~g~~-Vtlve~   52 (115)
T d1lvla2          21 PQHLVVVGGGYIGLELGIAYRKLGAQ-VSVVEA   52 (115)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHTCE-EEEECS
T ss_pred             CCeEEEECCCHHHHHHHHHHhhcccc-eEEEee
Confidence            36899999999999999999999985 999977

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=96.29  E-value=0.0022  Score=51.02  Aligned_cols=34  Identities=12%  Similarity=0.073  Sum_probs=30.5

Q ss_pred             hcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        30 ~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      ...+|+|+|+|++|..++..+...|...+.+.|.
T Consensus        28 ~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~   61 (174)
T d1f8fa2          28 PASSFVTWGAGAVGLSALLAAKVCGASIIIAVDI   61 (174)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEES
T ss_pred             CCCEEEEeCCCHHHhhhhhcccccccceeeeecc
Confidence            4567999999999999999999999998888876

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=96.28  E-value=0.0043  Score=48.22  Aligned_cols=83  Identities=11%  Similarity=0.149  Sum_probs=51.0

Q ss_pred             cEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEeeCC
Q 020565           33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGD  112 (324)
Q Consensus        33 ~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~~~  112 (324)
                      ||.+||+|-+|+.+++.|..+|- ++++.|.                      ...|++.+++++   .  +.       
T Consensus         2 kIg~IG~G~mG~al~~~l~~~~~-~i~v~~r----------------------~~~~~~~l~~~~---g--~~-------   46 (152)
T d2ahra2           2 KIGIIGVGKMASAIIKGLKQTPH-ELIISGS----------------------SLERSKEIAEQL---A--LP-------   46 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHTTSSC-EEEEECS----------------------SHHHHHHHHHHH---T--CC-------
T ss_pred             EEEEEeccHHHHHHHHHHHhCCC-eEEEEcC----------------------hHHhHHhhcccc---c--ee-------
Confidence            69999999999999999998874 4666544                      333444433332   1  11       


Q ss_pred             CCCCchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEE
Q 020565          113 LSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFY  154 (324)
Q Consensus       113 ~~~~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i  154 (324)
                      ......+..+.+|+||.|..+..    +.+.+.++..+..+|
T Consensus        47 ~~~~~~~~~~~~dvIilavkp~~----~~~vl~~l~~~~~ii   84 (152)
T d2ahra2          47 YAMSHQDLIDQVDLVILGIKPQL----FETVLKPLHFKQPII   84 (152)
T ss_dssp             BCSSHHHHHHTCSEEEECSCGGG----HHHHHTTSCCCSCEE
T ss_pred             eechhhhhhhccceeeeecchHh----HHHHhhhcccceeEe
Confidence            11234566788999999986533    334444433444444

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.22  E-value=0.0021  Score=51.37  Aligned_cols=35  Identities=11%  Similarity=0.213  Sum_probs=32.2

Q ss_pred             hcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (324)
Q Consensus        30 ~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d   64 (324)
                      ..+||+|||.|..|.++|..|++.|...++|+|..
T Consensus         3 ~~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~   37 (196)
T d1gtea4           3 YSAKIALLGAGPASISCASFLARLGYSDITIFEKQ   37 (196)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred             CCCEEEEECChHHHHHHHHHHHHCCCCeEEEEEec
Confidence            46899999999999999999999999889999873

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=96.14  E-value=0.014  Score=41.69  Aligned_cols=88  Identities=17%  Similarity=0.214  Sum_probs=56.0

Q ss_pred             hcCcEEEEcCchhH-HHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeE
Q 020565           30 SKSHILVCGMKGTV-AEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV  108 (324)
Q Consensus        30 ~~~~VliiG~g~lG-sei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~  108 (324)
                      +.++|.+||.||+| +.+|+.|...|.. ++--|..        .+                 ...+.|.+..  +.+..
T Consensus         7 ~~~~ihfiGigG~GMs~LA~~L~~~G~~-VsGSD~~--------~~-----------------~~~~~L~~~G--i~v~~   58 (96)
T d1p3da1           7 RVQQIHFIGIGGAGMSGIAEILLNEGYQ-ISGSDIA--------DG-----------------VVTQRLAQAG--AKIYI   58 (96)
T ss_dssp             TCCEEEEETTTSTTHHHHHHHHHHHTCE-EEEEESC--------CS-----------------HHHHHHHHTT--CEEEE
T ss_pred             hCCEEEEEEECHHHHHHHHHHHHhCCCE-EEEEeCC--------CC-----------------hhhhHHHHCC--CeEEE
Confidence            45789999999999 7779999999985 7776641        11                 1124455543  44433


Q ss_pred             eeCCCCCCchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEE
Q 020565          109 EKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFY  154 (324)
Q Consensus       109 ~~~~~~~~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i  154 (324)
                      .      ...+.+++.|+||.+..=++..-.+ ..|++  +++|+|
T Consensus        59 g------~~~~~i~~~d~vV~S~AI~~~npel-~~A~~--~gipii   95 (96)
T d1p3da1          59 G------HAEEHIEGASVVVVSSAIKDDNPEL-VTSKQ--KRIPVI   95 (96)
T ss_dssp             S------CCGGGGTTCSEEEECTTSCTTCHHH-HHHHH--TTCCEE
T ss_pred             C------CccccCCCCCEEEECCCcCCCCHHH-HHHHH--cCCCEE
Confidence            1      1133457889999886522222233 34778  899986

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=96.14  E-value=0.017  Score=45.73  Aligned_cols=90  Identities=14%  Similarity=0.008  Sum_probs=56.8

Q ss_pred             cCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEee
Q 020565           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEK  110 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~  110 (324)
                      ...|+|+|+||+|...+..+...|..++..+|.                      ...|.+.+    +++--+..+...+
T Consensus        30 g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~----------------------~~~kl~~A----k~~GA~~~in~~~   83 (176)
T d1d1ta2          30 GSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDL----------------------NKDKFEKA----MAVGATECISPKD   83 (176)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECS----------------------CGGGHHHH----HHHTCSEEECGGG
T ss_pred             CCEEEEECCCchhHHHHHHHHHcCCceEEEecC----------------------cHHHHHHH----HhcCCcEEECccc
Confidence            567999999999999999999999999999987                      33333322    3333332332222


Q ss_pred             CCCC-CCch--hhcCCccEEEEcCCCHHHHHHHHHHHHh
Q 020565          111 GDLS-SLDG--EFYDKFDVVVVSCCSVTTKKLINEKCRK  146 (324)
Q Consensus       111 ~~~~-~~~~--~~~~~~diVi~~~~~~~~~~~l~~~~~~  146 (324)
                      .+.. ....  ..-.++|+||+++....+...--..++.
T Consensus        84 ~~~~~~~~~~~~~g~G~d~vi~~~g~~~~~~~a~~~~~~  122 (176)
T d1d1ta2          84 STKPISEVLSEMTGNNVGYTFEVIGHLETMIDALASCHM  122 (176)
T ss_dssp             CSSCHHHHHHHHHTSCCCEEEECSCCHHHHHHHHTTSCT
T ss_pred             cchHHHHHHHHhccccceEEEEeCCchHHHHHHHHHhhc
Confidence            1111 1011  1225799999999998765544344433

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=96.11  E-value=0.013  Score=45.13  Aligned_cols=33  Identities=15%  Similarity=0.323  Sum_probs=29.7

Q ss_pred             CcEEEEc-CchhHHHHHHHHHHhCCCcEEEEcCCc
Q 020565           32 SHILVCG-MKGTVAEFCKNIVLAGVGSLTLMDDRV   65 (324)
Q Consensus        32 ~~VliiG-~g~lGsei~k~L~~~Gv~~i~lvD~d~   65 (324)
                      .||.||| +|-+|..++++|..+|.. ++++|.+.
T Consensus        10 ~kI~iIGg~G~mG~~la~~L~~~G~~-V~~~d~~~   43 (152)
T d2pv7a2          10 HKIVIVGGYGKLGGLFARYLRASGYP-ISILDRED   43 (152)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHTTTCC-EEEECTTC
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHcCCC-cEeccccc
Confidence            5899999 899999999999999995 88988743

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=96.08  E-value=0.0078  Score=50.97  Aligned_cols=65  Identities=20%  Similarity=0.251  Sum_probs=50.5

Q ss_pred             HHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeE
Q 020565           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRV  106 (324)
Q Consensus        28 ~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v  106 (324)
                      ||+++.++|.|. +|+|.++++.|+..|.. +.+.|.                      ...+.+.+.+.+.+..+..++
T Consensus         1 rl~gK~alITGas~GIG~aia~~la~~Ga~-V~i~~r----------------------~~~~l~~~~~~~~~~~~~~~~   57 (258)
T d1iy8a_           1 RFTDRVVLITGGGSGLGRATAVRLAAEGAK-LSLVDV----------------------SSEGLEASKAAVLETAPDAEV   57 (258)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEES----------------------CHHHHHHHHHHHHHHCTTCCE
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEEC----------------------CHHHHHHHHHHHHhhCCCCeE
Confidence            578899999996 58999999999999975 888775                      444667777777777777777


Q ss_pred             eEeeCCCCC
Q 020565          107 SVEKGDLSS  115 (324)
Q Consensus       107 ~~~~~~~~~  115 (324)
                      .....++++
T Consensus        58 ~~~~~Dvt~   66 (258)
T d1iy8a_          58 LTTVADVSD   66 (258)
T ss_dssp             EEEECCTTS
T ss_pred             EEEeccCCC
Confidence            666666543

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.05  E-value=0.012  Score=47.49  Aligned_cols=99  Identities=16%  Similarity=0.083  Sum_probs=60.5

Q ss_pred             hcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeE
Q 020565           30 SKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV  108 (324)
Q Consensus        30 ~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~  108 (324)
                      .-+||+|+|+ |.+|+.+++.|...|. ++++++.+.-....           .   .              .+  .++.
T Consensus         2 ~~kkIlV~GatG~iG~~v~~~Ll~~g~-~V~~~~R~~~~~~~-----------~---~--------------~~--~~~~   50 (205)
T d1hdoa_           2 AVKKIAIFGATGQTGLTTLAQAVQAGY-EVTVLVRDSSRLPS-----------E---G--------------PR--PAHV   50 (205)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCGGGSCS-----------S---S--------------CC--CSEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcC-EEEEEEcChhhccc-----------c---c--------------cc--cccc
Confidence            3578999996 7899999999999997 48887653221110           0   0              11  2334


Q ss_pred             eeCCCCCC--chhhcCCccEEEEcCCCH----------HHHHHHHHHHHhccCCcc-EEEeeecCc
Q 020565          109 EKGDLSSL--DGEFYDKFDVVVVSCCSV----------TTKKLINEKCRKLSKRVA-FYTVDCRDS  161 (324)
Q Consensus       109 ~~~~~~~~--~~~~~~~~diVi~~~~~~----------~~~~~l~~~~~~~~~~ip-~i~~~~~G~  161 (324)
                      ...++.+.  ..+.++++|+||.+....          .....+-+.+++  .+++ ||..++.|.
T Consensus        51 ~~gD~~d~~~l~~al~~~d~vi~~~g~~~~~~~~~~~~~~~~~l~~aa~~--~~v~r~i~~ss~~~  114 (205)
T d1hdoa_          51 VVGDVLQAADVDKTVAGQDAVIVLLGTRNDLSPTTVMSEGARNIVAAMKA--HGVDKVVACTSAFL  114 (205)
T ss_dssp             EESCTTSHHHHHHHHTTCSEEEECCCCTTCCSCCCHHHHHHHHHHHHHHH--HTCCEEEEECCGGG
T ss_pred             ccccccchhhHHHHhcCCCEEEEEeccCCchhhhhhhHHHHHHHHHHHHh--cCCCeEEEEeeeec
Confidence            44555442  345678899998876421          122345566777  6665 666665554

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.00  E-value=0.026  Score=46.47  Aligned_cols=103  Identities=16%  Similarity=0.157  Sum_probs=63.9

Q ss_pred             HHhcCcEEEEcC-chhHHHHHHHHHHhCC-CcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCe
Q 020565           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGV-GSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVR  105 (324)
Q Consensus        28 ~l~~~~VliiG~-g~lGsei~k~L~~~Gv-~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~  105 (324)
                      ++++.+|+|.|+ |-+|+++++.|...|. .+++++..+......         .                   ..+.+.
T Consensus        11 ~m~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~---------~-------------------~~~~i~   62 (232)
T d2bkaa1          11 RMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDE---------E-------------------AYKNVN   62 (232)
T ss_dssp             HHTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCS---------G-------------------GGGGCE
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhcc---------c-------------------ccceee
Confidence            478899999996 6799999999999985 578887653322110         0                   001122


Q ss_pred             EeEeeCCCCC--CchhhcCCccEEEEcCCCHH--------------HHHHHHHHHHhccCCcc-EEEeeecCce
Q 020565          106 VSVEKGDLSS--LDGEFYDKFDVVVVSCCSVT--------------TKKLINEKCRKLSKRVA-FYTVDCRDSC  162 (324)
Q Consensus       106 v~~~~~~~~~--~~~~~~~~~diVi~~~~~~~--------------~~~~l~~~~~~~~~~ip-~i~~~~~G~~  162 (324)
                      ..  ..++.+  .....++++|+|+.|.....              ....+-++|.+  .++. |+..++.+..
T Consensus        63 ~~--~~D~~~~~~~~~~~~~~d~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~--~~v~~fi~~Ss~~~~  132 (232)
T d2bkaa1          63 QE--VVDFEKLDDYASAFQGHDVGFCCLGTTRGKAGAEGFVRVDRDYVLKSAELAKA--GGCKHFNLLSSKGAD  132 (232)
T ss_dssp             EE--ECCGGGGGGGGGGGSSCSEEEECCCCCHHHHHHHHHHHHHTHHHHHHHHHHHH--TTCCEEEEECCTTCC
T ss_pred             ee--eecccccccccccccccccccccccccccccchhhhhhhcccccceeeecccc--cCccccccCCccccc
Confidence            22  222222  23455788999998864311              11346677888  7776 6777766543

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=95.97  E-value=0.0067  Score=44.96  Aligned_cols=55  Identities=13%  Similarity=0.094  Sum_probs=40.4

Q ss_pred             cCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhh
Q 020565           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDF  100 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~l  100 (324)
                      ..+|+|||.|.+|+|+|..|+..|.. +|+++...    .+-++       .   .+.-++.+.+.+++.
T Consensus        22 p~~v~IiGgG~iG~E~A~~l~~~g~~-Vtlv~~~~----~il~~-------~---d~~~~~~~~~~l~~~   76 (117)
T d1onfa2          22 SKKIGIVGSGYIAVELINVIKRLGID-SYIFARGN----RILRK-------F---DESVINVLENDMKKN   76 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTCE-EEEECSSS----SSCTT-------S---CHHHHHHHHHHHHHT
T ss_pred             CCEEEEECCchHHHHHHHHHHhcccc-ceeeehhc----ccccc-------c---cHHHHHHHHHHHHhC
Confidence            36899999999999999999999976 99998621    12222       1   344566777777764

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.96  E-value=0.019  Score=46.30  Aligned_cols=33  Identities=21%  Similarity=0.198  Sum_probs=30.2

Q ss_pred             CcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCc
Q 020565           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV   65 (324)
Q Consensus        32 ~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~   65 (324)
                      .+|.|||+|-+|+.+|..++++|.. ++++|.+.
T Consensus         5 kkvaViGaG~mG~~iA~~~a~~G~~-V~l~D~~~   37 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAATGHT-VVLVDQTE   37 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCE-EEEECSCH
T ss_pred             EEEEEECcCHHHHHHHHHHHhCCCc-EEEEECCh
Confidence            5899999999999999999999986 99999754

>d2vapa1 c.32.1.1 (A:23-231) Cell-division protein FtsZ {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.95  E-value=0.009  Score=49.00  Aligned_cols=112  Identities=15%  Similarity=0.149  Sum_probs=63.8

Q ss_pred             hcCcEEEEcCchhHHHHHHHHHHhCCCcE--EEEcCCccccccCCCC--cccCCCCcccCC-ccHHHHHHHHHHhhCCCC
Q 020565           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSL--TLMDDRVVTEEAWSAN--FLIPPDENVYGG-KTIAEVCCDSLKDFNPMV  104 (324)
Q Consensus        30 ~~~~VliiG~g~lGsei~k~L~~~Gv~~i--~lvD~d~v~~~nl~r~--~l~~~~di~~~G-~~ka~~~~~~l~~lnp~v  104 (324)
                      .+.+|.|||+||.|+.++.+|.+.|+..+  ..+|.|.-..+....+  .++........| ....+..++...+--   
T Consensus        14 ~~~ki~ViGvGGaG~n~v~~l~~~~~~~v~~iainTD~~~L~~~~~~~ki~ig~~~t~g~Gag~~p~~g~~aa~e~~---   90 (209)
T d2vapa1          14 TKAKITVVGCGGAGNNTITRLKMEGIEGAKTVAINTDAQQLIRTKADKKILIGKKLTRGLGAGGNPKIGEEAAKESA---   90 (209)
T ss_dssp             TCCCEEEEEEHHHHHHHHHHHHHHTCTTEEEEEEESBHHHHHTSCCSEEEECCTTTTTTBCCTTCHHHHHHHHHHTH---
T ss_pred             cCCcEEEEEeCChHHHHHHHHHHcCCCceEEEEEeCCHHHHhcCCcchhcccccccccccccccchHHHHHHHHHHH---
Confidence            56899999999999999999999998644  5568876655554322  222221100001 001111111111100   


Q ss_pred             eEeEeeCCCCCCchhhcCCccEEEEcCC-----CHHHHHHHHHHHHhccCCccEEEe
Q 020565          105 RVSVEKGDLSSLDGEFYDKFDVVVVSCC-----SVTTKKLINEKCRKLSKRVAFYTV  156 (324)
Q Consensus       105 ~v~~~~~~~~~~~~~~~~~~diVi~~~~-----~~~~~~~l~~~~~~~~~~ip~i~~  156 (324)
                                +...+.++++|+||.+..     .-...-.+.++|++  .+++.+..
T Consensus        91 ----------~~I~~~l~~~d~vfi~AGlGGGTGsgaapvia~~ake--~g~lvv~i  135 (209)
T d2vapa1          91 ----------EEIKAAIQDSDMVFITCGLGGGTGTGSAPVVAEISKK--IGALTVAV  135 (209)
T ss_dssp             ----------HHHHHHHTTCSEEEEEEETTSSHHHHHHHHHHHHHHH--TTCEEEEE
T ss_pred             ----------HHHHHhccCCCEEEEEEeCCCCccccHHHHHHHHHHH--cCCcEEEE
Confidence                      011334668888876643     12234578999999  88877743

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=95.94  E-value=0.029  Score=44.08  Aligned_cols=89  Identities=15%  Similarity=0.059  Sum_probs=56.2

Q ss_pred             CcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEeeC
Q 020565           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKG  111 (324)
Q Consensus        32 ~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~~  111 (324)
                      .+|+|+|+||+|...+..+...|..++..+|.                      ...|.+.+    +++--.-.+...+.
T Consensus        30 dtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~----------------------~~~k~~~a----~~~Ga~~~i~~~~~   83 (176)
T d2jhfa2          30 STCAVFGLGGVGLSVIMGCKAAGAARIIGVDI----------------------NKDKFAKA----KEVGATECVNPQDY   83 (176)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECS----------------------CGGGHHHH----HHTTCSEEECGGGC
T ss_pred             CEEEEECCCCcHHHHHHHHHHcCCceEEeecC----------------------cHHHHHHH----HHhCCeeEEecCCc
Confidence            57999999999999999999999999999887                      33343332    22221111211111


Q ss_pred             C-C-CCC-chhhcCCccEEEEcCCCHHHHHHHHHHHHh
Q 020565          112 D-L-SSL-DGEFYDKFDVVVVSCCSVTTKKLINEKCRK  146 (324)
Q Consensus       112 ~-~-~~~-~~~~~~~~diVi~~~~~~~~~~~l~~~~~~  146 (324)
                      + . ... ....-..+|+||++.............++.
T Consensus        84 ~~~~~~~~~~~~~~G~D~vid~~G~~~~~~~a~~~~~~  121 (176)
T d2jhfa2          84 KKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQE  121 (176)
T ss_dssp             SSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHHBCT
T ss_pred             hhHHHHHHHHHhcCCCCEEEecCCchhHHHHHHHHHhc
Confidence            1 0 000 011124799999999998776666666655

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=95.81  E-value=0.0016  Score=52.84  Aligned_cols=37  Identities=14%  Similarity=0.070  Sum_probs=32.4

Q ss_pred             HHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCc
Q 020565           28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV   65 (324)
Q Consensus        28 ~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~   65 (324)
                      .|...+|.|+|+|.+|.++++.|...|.. +..+|...
T Consensus        41 ~l~~~~vgiiG~G~IG~~va~~l~~fg~~-v~~~d~~~   77 (188)
T d2naca1          41 DLEAMHVGTVAAGRIGLAVLRRLAPFDVH-LHYTDRHR   77 (188)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHGGGTCE-EEEECSSC
T ss_pred             eccccceeeccccccchhhhhhhhccCce-EEEEeecc
Confidence            47789999999999999999999999986 77887743

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=95.77  E-value=0.021  Score=45.10  Aligned_cols=90  Identities=12%  Similarity=-0.030  Sum_probs=55.9

Q ss_pred             cCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEee
Q 020565           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEK  110 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~  110 (324)
                      ..+|+|+|+|++|...+..+...|..++..+|.                      ...|.+.+    +++--...++...
T Consensus        28 G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~----------------------~~~kl~~a----~~lGa~~~i~~~~   81 (174)
T d1p0fa2          28 GSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGT----------------------HKDKFPKA----IELGATECLNPKD   81 (174)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTCSEEEEECS----------------------CGGGHHHH----HHTTCSEEECGGG
T ss_pred             CCEEEEECCCchhHHHHHHHHHcCCceeeccCC----------------------hHHHHHHH----HHcCCcEEEcCCC
Confidence            456999999999999999999999999999887                      23333332    2222222222111


Q ss_pred             CCCC-CCc--hhhcCCccEEEEcCCCHHHHHHHHHHHHh
Q 020565          111 GDLS-SLD--GEFYDKFDVVVVSCCSVTTKKLINEKCRK  146 (324)
Q Consensus       111 ~~~~-~~~--~~~~~~~diVi~~~~~~~~~~~l~~~~~~  146 (324)
                      .+.. ...  ...-..+|+||+++.+..+....-..++.
T Consensus        82 ~d~~~~~~~~~~~~~G~d~vid~~g~~~~~~~~~~~~~~  120 (174)
T d1p0fa2          82 YDKPIYEVICEKTNGGVDYAVECAGRIETMMNALQSTYC  120 (174)
T ss_dssp             CSSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHTBCT
T ss_pred             chhHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHH
Confidence            1100 000  11114799999999998766555555544

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=95.77  E-value=0.0011  Score=53.93  Aligned_cols=38  Identities=11%  Similarity=0.170  Sum_probs=32.5

Q ss_pred             HHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCc
Q 020565           27 RRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV   65 (324)
Q Consensus        27 ~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~   65 (324)
                      ..++.++|.|+|+|.+|.++++.|...|.. +..+|...
T Consensus        43 ~~l~g~tvgIiG~G~IG~~va~~l~~fg~~-v~~~d~~~   80 (191)
T d1gdha1          43 EKLDNKTLGIYGFGSIGQALAKRAQGFDMD-IDYFDTHR   80 (191)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHTTTCE-EEEECSSC
T ss_pred             ceecccceEEeecccchHHHHHHHHhhccc-cccccccc
Confidence            457789999999999999999999999987 66777633

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=95.74  E-value=0.02  Score=42.79  Aligned_cols=87  Identities=15%  Similarity=0.195  Sum_probs=55.6

Q ss_pred             CcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEeeC
Q 020565           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKG  111 (324)
Q Consensus        32 ~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~~  111 (324)
                      +||+|+|.|.+|.++++.|...   .+.++|.+.                      .+.+.    +++.  .+  .++..
T Consensus         1 kHivI~G~g~~g~~l~~~L~~~---~i~vi~~d~----------------------~~~~~----~~~~--~~--~~i~G   47 (129)
T d2fy8a1           1 RHVVICGWSESTLECLRELRGS---EVFVLAEDE----------------------NVRKK----VLRS--GA--NFVHG   47 (129)
T ss_dssp             CCEEEESCCHHHHHHHHTSCGG---GEEEEESCT----------------------THHHH----HHHT--TC--EEEES
T ss_pred             CEEEEECCCHHHHHHHHHHcCC---CCEEEEcch----------------------HHHHH----HHhc--Cc--ccccc
Confidence            5899999999999999999544   356766521                      12221    2221  22  23334


Q ss_pred             CCCC---CchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCc
Q 020565          112 DLSS---LDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRV  151 (324)
Q Consensus       112 ~~~~---~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~i  151 (324)
                      +.++   ....-+++++.||.++++......+-..++++...+
T Consensus        48 d~~~~~~L~~a~i~~A~~vi~~~~~d~~n~~~~~~~r~~~~~~   90 (129)
T d2fy8a1          48 DPTRVSDLEKANVRGARAVIVNLESDSETIHCILGIRKIDESV   90 (129)
T ss_dssp             CTTSHHHHHHTTCTTCSEEEECCSSHHHHHHHHHHHHHHCSSS
T ss_pred             ccCCHHHHHHhhhhcCcEEEEeccchhhhHHHHHHHHHHCCCc
Confidence            4332   223446789999999998888877777787743343

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=95.70  E-value=0.029  Score=44.29  Aligned_cols=33  Identities=18%  Similarity=0.120  Sum_probs=30.6

Q ss_pred             cCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      ..+|+|+|+|++|...+..+...|.+.+++.|.
T Consensus        29 G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~   61 (174)
T d1e3ia2          29 GSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDI   61 (174)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECS
T ss_pred             CCEEEEECCChHHHHHHHHHHHhCCceeeeecc
Confidence            368999999999999999999999999999887

>d1w5fa1 c.32.1.1 (A:22-215) Cell-division protein FtsZ {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Thermotoga maritima [TaxId: 2336]

Probab=95.69  E-value=0.014  Score=47.20  Aligned_cols=101  Identities=14%  Similarity=0.163  Sum_probs=61.1

Q ss_pred             cEEEEcCchhHHHHHHHHHHhCCCc--EEEEcCCccccccCCCC--cccCCCCcccC--------CccHHHHHHHHHHhh
Q 020565           33 HILVCGMKGTVAEFCKNIVLAGVGS--LTLMDDRVVTEEAWSAN--FLIPPDENVYG--------GKTIAEVCCDSLKDF  100 (324)
Q Consensus        33 ~VliiG~g~lGsei~k~L~~~Gv~~--i~lvD~d~v~~~nl~r~--~l~~~~di~~~--------G~~ka~~~~~~l~~l  100 (324)
                      ||.|||+||.|+.++.+|...|+..  +..+|.|.-..+....+  .++..+.....        |+.-++...+.+   
T Consensus         2 kI~viGvGGaG~n~v~~l~~~~~~~v~~iainTD~~~L~~~~a~~ki~iG~~~t~G~G~g~~p~~g~~aa~e~~~~I---   78 (194)
T d1w5fa1           2 KIKVIGVGGAGNNAINRMIEIGIHGVEFVAVNTDLQVLEASNADVKIQIGENITRGLGAGGRPEIGEQAALESEEKI---   78 (194)
T ss_dssp             CEEEEEEHHHHHHHHHHHHHHCCTTEEEEEEESCHHHHHTCCCSEEEECCTTTTTTSCCTTCHHHHHHHHHHTHHHH---
T ss_pred             eEEEEEeCchHHHHHHHHHHcCCCceEEEEEcCCHHHHhcCCcceEEecccccCCCcccccCchhhHhHHHHHHHHH---
Confidence            7999999999999999999999864  46678876555443221  22222210000        111222222222   


Q ss_pred             CCCCeEeEeeCCCCCCchhhcCCccEEEEcCC-----CHHHHHHHHHHHHhccCCccEEE
Q 020565          101 NPMVRVSVEKGDLSSLDGEFYDKFDVVVVSCC-----SVTTKKLINEKCRKLSKRVAFYT  155 (324)
Q Consensus       101 np~v~v~~~~~~~~~~~~~~~~~~diVi~~~~-----~~~~~~~l~~~~~~~~~~ip~i~  155 (324)
                                       .+.++++|+||.+..     .-...-.+.++|++  .+++.+.
T Consensus        79 -----------------~~~l~~~d~vfi~AGlGGgTGtgaapviA~~ake--~g~lvv~  119 (194)
T d1w5fa1          79 -----------------REVLQDTHMVFITAGFGGGTGTGASPVIAKIAKE--MGILTVA  119 (194)
T ss_dssp             -----------------HHHTTTCSEEEEEEETTSSHHHHHHHHHHHHHHH--TTCEEEE
T ss_pred             -----------------HHHhcCCCeEEEEEecCCCcccchHHHHHHHHHH--cCCceEE
Confidence                             344578888876642     12244578999999  8887663

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.53  E-value=0.017  Score=47.22  Aligned_cols=32  Identities=9%  Similarity=0.107  Sum_probs=29.2

Q ss_pred             cEEEEcCchhHHHHHHHHHHhCCC-cEEEEcCC
Q 020565           33 HILVCGMKGTVAEFCKNIVLAGVG-SLTLMDDR   64 (324)
Q Consensus        33 ~VliiG~g~lGsei~k~L~~~Gv~-~i~lvD~d   64 (324)
                      ||+|||.|..|..+|..|.++|.+ +++++|..
T Consensus         3 kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~   35 (230)
T d1cjca2           3 QICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQ   35 (230)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSSCEEEEECSS
T ss_pred             eEEEECccHHHHHHHHHHHhcCCCCeEEEEeCC
Confidence            799999999999999999999876 69999874

>d1ofua1 c.32.1.1 (A:11-208) Cell-division protein FtsZ {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.53  E-value=0.023  Score=45.97  Aligned_cols=106  Identities=12%  Similarity=0.121  Sum_probs=61.5

Q ss_pred             CcEEEEcCchhHHHHHHHHHHhCCC--cEEEEcCCccccccCCCC--cccCCCC---cccCCcc-HHHHHHHHHHhhCCC
Q 020565           32 SHILVCGMKGTVAEFCKNIVLAGVG--SLTLMDDRVVTEEAWSAN--FLIPPDE---NVYGGKT-IAEVCCDSLKDFNPM  103 (324)
Q Consensus        32 ~~VliiG~g~lGsei~k~L~~~Gv~--~i~lvD~d~v~~~nl~r~--~l~~~~d---i~~~G~~-ka~~~~~~l~~lnp~  103 (324)
                      +.|.|||.||.|+.++..|.+.|+.  ++..+|.|.-..++...+  +++.+.-   .-..|.+ +.+.+++.-      
T Consensus         2 a~IkViGvGGaG~n~v~~~~~~~~~~v~~iainTD~~~L~~~~~~~ki~iG~~~~~g~G~gg~p~~g~~aa~e~------   75 (198)
T d1ofua1           2 AVIKVIGVGGGGGNAVNHMAKNNVEGVEFICANTDAQALKNIAARTVLQLGPGVTKGLGAGANPEVGRQAALED------   75 (198)
T ss_dssp             CCEEEEEEHHHHHHHHHHHHHTTCCSEEEEEEESBTGGGSSCSCSEEEECCHHHHTTBCCCSCHHHHHHHHHHT------
T ss_pred             ceEEEEEECchHHHHHHHHHHcCCCCeEEEEEeCcHHHHhcCCccceeccccccccCCCCCCChHHHHHHHHHH------
Confidence            5799999999999999999999986  455578876655543322  1111100   0000111 111111100      


Q ss_pred             CeEeEeeCCCCCCchhhcCCccEEEEcCC--C---HHHHHHHHHHHHhccCCccEEE
Q 020565          104 VRVSVEKGDLSSLDGEFYDKFDVVVVSCC--S---VTTKKLINEKCRKLSKRVAFYT  155 (324)
Q Consensus       104 v~v~~~~~~~~~~~~~~~~~~diVi~~~~--~---~~~~~~l~~~~~~~~~~ip~i~  155 (324)
                                .+...+.++++|+||.+..  .   -...-.+.++|++  .+++.+.
T Consensus        76 ----------~~~I~~~l~~~d~vfi~AGlGGGTGtgaapviA~~ake--~g~lvva  120 (198)
T d1ofua1          76 ----------RERISEVLEGADMVFITTGMGGGTGTGAAPIIAEVAKE--MGILTVA  120 (198)
T ss_dssp             ----------HHHHHHHHTTCSEEEEEEETTSSHHHHHHHHHHHHHHH--TTCEEEE
T ss_pred             ----------HHHHHHHhCCCCeEEEEecCCCCccccHHHHHHHHHHH--cCCCEEE
Confidence                      0122455788998876643  1   2234569999999  8887773

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=95.53  E-value=0.04  Score=43.33  Aligned_cols=93  Identities=17%  Similarity=0.178  Sum_probs=57.6

Q ss_pred             hcCcEEEEcCchhHHHHHHHHHHhC-----CCcEEEEcCCccccccCCCCcccCCCCcccCCccHH----HHHHHHHHhh
Q 020565           30 SKSHILVCGMKGTVAEFCKNIVLAG-----VGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIA----EVCCDSLKDF  100 (324)
Q Consensus        30 ~~~~VliiG~g~lGsei~k~L~~~G-----v~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka----~~~~~~l~~l  100 (324)
                      ++.||.|||+|++|...+-...+..     ++++.|+|-                      .+.|+    +.+.......
T Consensus         2 k~~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Di----------------------d~~~~~~~~~~~~~~~~~~   59 (167)
T d1u8xx1           2 KSFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDN----------------------DKERQDRIAGACDVFIREK   59 (167)
T ss_dssp             CCEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECS----------------------CHHHHHHHHHHHHHHHHHH
T ss_pred             CCceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcC----------------------ChhHHHHHHHHHHHHHHHh
Confidence            3568999999999876443333322     357888876                      33344    4444444555


Q ss_pred             CCCCeEeEeeCCCCCCchhhcCCccEEEEcCCCHH--HHHHHHHHHHhccCCc
Q 020565          101 NPMVRVSVEKGDLSSLDGEFYDKFDVVVVSCCSVT--TKKLINEKCRKLSKRV  151 (324)
Q Consensus       101 np~v~v~~~~~~~~~~~~~~~~~~diVi~~~~~~~--~~~~l~~~~~~~~~~i  151 (324)
                      +...++.....     ..+.++++|+||.+.....  -+.+...+..+  +++
T Consensus        60 ~~~~~~~~~~d-----~~eal~~AD~Vvitag~~~~~g~~rd~~i~~~--~Gi  105 (167)
T d1u8xx1          60 APDIEFAATTD-----PEEAFTDVDFVMAHIRVGKYAMRALDEQIPLK--YGV  105 (167)
T ss_dssp             CTTSEEEEESC-----HHHHHSSCSEEEECCCTTHHHHHHHHHHHHHT--TTC
T ss_pred             CCCcceEecCC-----hhhccCCCCEEEECCCcCCCCceeHHHhhchh--cCc
Confidence            66666665432     3566889999999987533  33444555655  555

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=95.46  E-value=0.0068  Score=51.89  Aligned_cols=36  Identities=17%  Similarity=0.333  Sum_probs=32.6

Q ss_pred             CcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccc
Q 020565           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVT   67 (324)
Q Consensus        32 ~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~   67 (324)
                      .+|+|||+|.+|+.+|..|++.|..+++|+|.+.+.
T Consensus         2 ~dViIIGaGi~G~s~A~~La~~G~~~V~liE~~~~~   37 (305)
T d1pj5a2           2 PRIVIIGAGIVGTNLADELVTRGWNNITVLDQGPLN   37 (305)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSCTT
T ss_pred             CCEEEECcCHHHHHHHHHHHHcCCCcEEEEeCCCCC
Confidence            379999999999999999999999889999987553

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=95.39  E-value=0.035  Score=43.08  Aligned_cols=85  Identities=14%  Similarity=0.108  Sum_probs=49.6

Q ss_pred             CcEEEEcCchhHHH-HHHHHHHh-CCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEe
Q 020565           32 SHILVCGMKGTVAE-FCKNIVLA-GVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVE  109 (324)
Q Consensus        32 ~~VliiG~g~lGse-i~k~L~~~-Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~  109 (324)
                      -||.|||+|.+|.. .+..|... |+.-+.++|.                      ...|++.+++..   +  +.    
T Consensus         2 iri~iIG~G~~g~~~~~~~l~~~~~~~i~~v~d~----------------------~~~~~~~~~~~~---~--~~----   50 (164)
T d1tlta1           2 LRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSP----------------------TRAKALPICESW---R--IP----   50 (164)
T ss_dssp             EEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECS----------------------SCTTHHHHHHHH---T--CC----
T ss_pred             CEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEEec----------------------hhHhhhhhhhcc---c--cc----
Confidence            37999999999987 46666654 4443445554                      223444444333   1  11    


Q ss_pred             eCCCCCCchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccE
Q 020565          110 KGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAF  153 (324)
Q Consensus       110 ~~~~~~~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~  153 (324)
                         +.+..+++.++.|+|++|+-+. ....+...|-+  .++++
T Consensus        51 ---~~~~~~~l~~~~D~V~I~tp~~-~h~~~~~~al~--~gk~V   88 (164)
T d1tlta1          51 ---YADSLSSLAASCDAVFVHSSTA-SHFDVVSTLLN--AGVHV   88 (164)
T ss_dssp             ---BCSSHHHHHTTCSEEEECSCTT-HHHHHHHHHHH--TTCEE
T ss_pred             ---ccccchhhhhhcccccccccch-hcccccccccc--cccee
Confidence               1122345567899999888653 45555566656  66654

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=95.27  E-value=0.027  Score=47.59  Aligned_cols=107  Identities=13%  Similarity=0.072  Sum_probs=61.3

Q ss_pred             hcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhh-CCCCeEe
Q 020565           30 SKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDF-NPMVRVS  107 (324)
Q Consensus        30 ~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~l-np~v~v~  107 (324)
                      +++||||.|. |-+|+.+++.|...|.. ++.++.+...              .   ...+.+.    +..+ ++.+  +
T Consensus         2 ~k~KILVtGatG~iG~~l~~~L~~~G~~-V~~~~R~~~~--------------~---~~~~~~~----~~~~~~~~v--~   57 (312)
T d1qyda_           2 KKSRVLIVGGTGYIGKRIVNASISLGHP-TYVLFRPEVV--------------S---NIDKVQM----LLYFKQLGA--K   57 (312)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTTCC-EEEECCSCCS--------------S---CHHHHHH----HHHHHTTTC--E
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCE-EEEEECCCcc--------------c---chhHHHH----HhhhccCCc--E
Confidence            4688999996 77999999999999954 7666542111              1   1122221    2222 2233  3


Q ss_pred             EeeCCCCC--CchhhcCCccEEEEcCC------CH-HHHHHHHHHHHhccCCccEEEeeecCce
Q 020565          108 VEKGDLSS--LDGEFYDKFDVVVVSCC------SV-TTKKLINEKCRKLSKRVAFYTVDCRDSC  162 (324)
Q Consensus       108 ~~~~~~~~--~~~~~~~~~diVi~~~~------~~-~~~~~l~~~~~~~~~~ip~i~~~~~G~~  162 (324)
                      ....++.+  .....+.+.+.++.+..      +. .....+...+..  .+.+++...+.|..
T Consensus        58 ~v~~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~--~~~~~v~~Ss~g~~  119 (312)
T d1qyda_          58 LIEASLDDHQRLVDALKQVDVVISALAGGVLSHHILEQLKLVEAIKEA--GNIKRFLPSEFGMD  119 (312)
T ss_dssp             EECCCSSCHHHHHHHHTTCSEEEECCCCSSSSTTTTTHHHHHHHHHHS--CCCSEEECSCCSSC
T ss_pred             EEEeecccchhhhhhccCcchhhhhhhhcccccchhhhhHHHHHHHHh--cCCcEEEEeecccc
Confidence            44444443  23456678888887643      21 233445555555  56777777666543

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.23  E-value=0.0086  Score=44.63  Aligned_cols=32  Identities=13%  Similarity=0.027  Sum_probs=29.6

Q ss_pred             cCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      .++++|||.|.+|+|+|..|+..|.. +|+++.
T Consensus        23 p~~~vIiG~G~ig~E~A~~l~~lG~~-Vtii~~   54 (122)
T d1v59a2          23 PKRLTIIGGGIIGLEMGSVYSRLGSK-VTVVEF   54 (122)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCE-EEEECS
T ss_pred             CCeEEEECCCchHHHHHHHHHhhCcc-eeEEEe
Confidence            46899999999999999999999986 999886

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.21  E-value=0.017  Score=49.24  Aligned_cols=65  Identities=12%  Similarity=0.174  Sum_probs=48.0

Q ss_pred             HHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCC-CCe
Q 020565           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNP-MVR  105 (324)
Q Consensus        28 ~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp-~v~  105 (324)
                      ||++++++|.|+ +|+|.++|+.|+..|.. +.+.|.                      .+.+.+.+++.+.+... ..+
T Consensus         1 rL~gK~alITGas~GIG~aia~~la~~Ga~-V~~~~r----------------------~~~~l~~~~~~i~~~~~~~~~   57 (274)
T d1xhla_           1 RFSGKSVIITGSSNGIGRSAAVIFAKEGAQ-VTITGR----------------------NEDRLEETKQQILKAGVPAEK   57 (274)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEES----------------------CHHHHHHHHHHHHHTTCCGGG
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEEC----------------------CHHHHHHHHHHHHHcCCCCcc
Confidence            578899999996 68999999999999985 888765                      44466667777776643 335


Q ss_pred             EeEeeCCCCC
Q 020565          106 VSVEKGDLSS  115 (324)
Q Consensus       106 v~~~~~~~~~  115 (324)
                      +..+..++++
T Consensus        58 ~~~~~~Dv~~   67 (274)
T d1xhla_          58 INAVVADVTE   67 (274)
T ss_dssp             EEEEECCTTS
T ss_pred             eEEEEeeCCC
Confidence            5555555543

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=95.21  E-value=0.011  Score=48.75  Aligned_cols=36  Identities=11%  Similarity=0.111  Sum_probs=32.2

Q ss_pred             cCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccc
Q 020565           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVT   67 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~   67 (324)
                      +++|+|||+|-.|..+|..|+..|. +++|+|.+.+.
T Consensus         6 ~~kVvVIGaGiaGl~~A~~L~~~G~-~V~vier~~~~   41 (268)
T d1c0pa1           6 QKRVVVLGSGVIGLSSALILARKGY-SVHILARDLPE   41 (268)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSCTT
T ss_pred             CCcEEEECccHHHHHHHHHHHHCCC-CEEEEeCCCCC
Confidence            4689999999999999999999999 59999987653

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.17  E-value=0.047  Score=46.85  Aligned_cols=102  Identities=12%  Similarity=0.231  Sum_probs=62.8

Q ss_pred             cCcEEEEcCch-hHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEe
Q 020565           31 KSHILVCGMKG-TVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVE  109 (324)
Q Consensus        31 ~~~VliiG~g~-lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~  109 (324)
                      ++||||.|.+| +|+.+++.|...|.. ++.+|...       .            ++.      +.+.......+++..
T Consensus         1 kKKIlVtG~sGfiG~~lv~~L~~~g~~-V~~~d~~~-------~------------~~~------~~~~~~~~~~~~d~~   54 (312)
T d2b69a1           1 RKRILITGGAGFVGSHLTDKLMMDGHE-VTVVDNFF-------T------------GRK------RNVEHWIGHENFELI   54 (312)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEECCS-------S------------CCG------GGTGGGTTCTTEEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcCE-EEEEeCCC-------c------------CCH------HHHHHhcCCCceEEE
Confidence            47899999755 999999999999975 77777411       0            000      001122233445544


Q ss_pred             eCCCCCCchhhcCCccEEEEcCC---------CHHH--------HHHHHHHHHhccCCccEEEeeecCceE
Q 020565          110 KGDLSSLDGEFYDKFDVVVVSCC---------SVTT--------KKLINEKCRKLSKRVAFYTVDCRDSCG  163 (324)
Q Consensus       110 ~~~~~~~~~~~~~~~diVi~~~~---------~~~~--------~~~l~~~~~~~~~~ip~i~~~~~G~~g  163 (324)
                      ..+..   ...+.++|+||-+..         ++..        ...|-+.|++  .++.+|.+++...+|
T Consensus        55 ~~~~~---~~~~~~~d~VihlAa~~~~~~~~~~~~~~~~~Nv~g~~~ll~~~~~--~~~k~I~~SS~~vy~  120 (312)
T d2b69a1          55 NHDVV---EPLYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKR--VGARLLLASTSEVYG  120 (312)
T ss_dssp             ECCTT---SCCCCCCSEEEECCSCCSHHHHTTCHHHHHHHHHHHHHHHHHHHHH--HTCEEEEEEEGGGGB
T ss_pred             ehHHH---HHHHcCCCEEEECcccCCchhHHhCHHHHHHHHHHHHHHHHHHHHH--cCCcEEEEEChheec
Confidence            44332   233457999985532         2111        1345577888  778899999888777

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=95.17  E-value=0.015  Score=49.10  Aligned_cols=36  Identities=17%  Similarity=0.250  Sum_probs=31.8

Q ss_pred             HHHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           27 RRLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        27 ~~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      +||+++.++|.|. +|+|.++++.|+..|.. +.++|.
T Consensus         1 krL~gK~alITGas~GIG~aia~~la~~Ga~-V~~~~r   37 (260)
T d1zema1           1 KKFNGKVCLVTGAGGNIGLATALRLAEEGTA-IALLDM   37 (260)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEEC
Confidence            4789999999996 68999999999999975 888776

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=95.17  E-value=0.01  Score=43.72  Aligned_cols=31  Identities=19%  Similarity=0.111  Sum_probs=29.2

Q ss_pred             CcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        32 ~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      ++|+|||.|.+|+|+|..|.+.|. ++|+++.
T Consensus        22 ~~vvIiGgG~ig~E~A~~l~~~G~-~Vtlve~   52 (116)
T d1gesa2          22 ERVAVVGAGYIGVELGGVINGLGA-KTHLFEM   52 (116)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTC-EEEEECS
T ss_pred             CEEEEECCChhhHHHHHHhhcccc-EEEEEee
Confidence            689999999999999999999998 5999987

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.16  E-value=0.024  Score=45.88  Aligned_cols=41  Identities=12%  Similarity=0.036  Sum_probs=34.2

Q ss_pred             cEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCC
Q 020565           33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSAN   74 (324)
Q Consensus        33 ~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~   74 (324)
                      +|.|||+|-+|..+|-.|+..|.. ++.+|.+.-....++..
T Consensus         2 kI~ViGlG~vGl~~a~~la~~g~~-V~g~D~n~~~i~~ln~g   42 (202)
T d1mv8a2           2 RISIFGLGYVGAVCAGCLSARGHE-VIGVDVSSTKIDLINQG   42 (202)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCE-EEEECSCHHHHHHHHTT
T ss_pred             EEEEECCCHhHHHHHHHHHhCCCc-EEEEeCCHHHHHHhccc
Confidence            699999999999999999999975 88999876555555443

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.16  E-value=0.02  Score=48.66  Aligned_cols=64  Identities=14%  Similarity=0.170  Sum_probs=45.6

Q ss_pred             HHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhC-CCCe
Q 020565           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFN-PMVR  105 (324)
Q Consensus        28 ~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~ln-p~v~  105 (324)
                      ||++++++|.|. +|+|.++|+.|+..|.. +.++|.                      .+.+.+.+++.+++.. +..+
T Consensus         2 rL~gK~alVTGas~GIG~aia~~la~~Ga~-V~l~~r----------------------~~~~l~~~~~~l~~~~~~~~~   58 (272)
T d1xkqa_           2 RFSNKTVIITGSSNGIGRTTAILFAQEGAN-VTITGR----------------------SSERLEETRQIILKSGVSEKQ   58 (272)
T ss_dssp             TTTTCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEES----------------------CHHHHHHHHHHHHTTTCCGGG
T ss_pred             CCCCCEEEEeCcCcHHHHHHHHHHHHCCCE-EEEEEC----------------------CHHHHHHHHHHHHhcCCCCCc
Confidence            588999999996 68999999999999984 888876                      3345556666666553 2334


Q ss_pred             EeEeeCCCC
Q 020565          106 VSVEKGDLS  114 (324)
Q Consensus       106 v~~~~~~~~  114 (324)
                      +..+..+++
T Consensus        59 ~~~~~~Dvs   67 (272)
T d1xkqa_          59 VNSVVADVT   67 (272)
T ss_dssp             EEEEECCTT
T ss_pred             eEEEEccCC
Confidence            555555544

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.15  E-value=0.012  Score=43.77  Aligned_cols=53  Identities=15%  Similarity=0.191  Sum_probs=39.9

Q ss_pred             CcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhh
Q 020565           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDF  100 (324)
Q Consensus        32 ~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~l  100 (324)
                      .+++|||.|.+|+|+|..|.+.|. ++||+..+.     +-++       .   .+.-++.+.+.+++.
T Consensus        21 ~~vvIIGgG~iG~E~A~~l~~lG~-~Vtii~~~~-----~l~~-------~---D~~~~~~l~~~l~~~   73 (122)
T d1h6va2          21 GKTLVVGASYVALECAGFLAGIGL-DVTVMVRSI-----LLRG-------F---DQDMANKIGEHMEEH   73 (122)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTC-CEEEEESSS-----SSTT-------S---CHHHHHHHHHHHHHT
T ss_pred             CeEEEECCCccHHHHHHHHhhcCC-eEEEEEech-----hhcc-------C---CHHHHHHHHHHHHHC
Confidence            589999999999999999999998 599986542     2222       1   333566777777775

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=95.13  E-value=0.0096  Score=44.38  Aligned_cols=57  Identities=19%  Similarity=0.113  Sum_probs=41.7

Q ss_pred             cCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhC
Q 020565           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFN  101 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~ln  101 (324)
                      .++|+|||.|.+|+|+|..|+..|.. +|+++...        +.+-  ...   ++.-++.+.+.+++..
T Consensus        30 ~k~vvViGgG~iG~E~A~~l~~~g~~-Vtlie~~~--------~~l~--~~~---d~~~~~~~~~~l~~~g   86 (123)
T d1nhpa2          30 VNNVVVIGSGYIGIEAAEAFAKAGKK-VTVIDILD--------RPLG--VYL---DKEFTDVLTEEMEANN   86 (123)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCE-EEEEESSS--------STTT--TTC---CHHHHHHHHHHHHTTT
T ss_pred             CCEEEEECChHHHHHHHHHhhccceE-EEEEEecC--------cccc--ccc---chhhHHHHHHHhhcCC
Confidence            56899999999999999999999986 99997731        1111  112   5556677777777653

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.12  E-value=0.0093  Score=43.90  Aligned_cols=31  Identities=16%  Similarity=0.172  Sum_probs=28.9

Q ss_pred             CcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        32 ~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      .+|+|||.|.+|+|+|..|+..|.. +|+++.
T Consensus        23 ~~v~IiGgG~ig~E~A~~l~~~G~~-Vtlve~   53 (117)
T d1ebda2          23 KSLVVIGGGYIGIELGTAYANFGTK-VTILEG   53 (117)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             CeEEEECCCccceeeeeeecccccE-EEEEEe
Confidence            6899999999999999999999976 999875

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=95.08  E-value=0.023  Score=48.00  Aligned_cols=81  Identities=14%  Similarity=0.138  Sum_probs=55.8

Q ss_pred             HHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCC-CCe
Q 020565           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNP-MVR  105 (324)
Q Consensus        28 ~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp-~v~  105 (324)
                      ||+++.++|.|. +|+|.++++.|+..|.. +.+.|.                      ...+.+.+++.|++... ..+
T Consensus         2 rl~gKvalVTGas~GIG~aia~~la~~Ga~-V~~~~r----------------------~~~~l~~~~~~l~~~~~~~~~   58 (264)
T d1spxa_           2 RFAEKVAIITGSSNGIGRATAVLFAREGAK-VTITGR----------------------HAERLEETRQQILAAGVSEQN   58 (264)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEES----------------------CHHHHHHHHHHHHHTTCCGGG
T ss_pred             CCCCCEEEEeCcCCHHHHHHHHHHHHCCCE-EEEEEC----------------------CHHHHHHHHHHHHhcCCCcCc
Confidence            688999999996 68999999999999975 888775                      44466777777776643 345


Q ss_pred             EeEeeCCCCCC--c-------hhhcCCccEEEEcC
Q 020565          106 VSVEKGDLSSL--D-------GEFYDKFDVVVVSC  131 (324)
Q Consensus       106 v~~~~~~~~~~--~-------~~~~~~~diVi~~~  131 (324)
                      +..+..++++.  .       .+.+...|++|.+.
T Consensus        59 ~~~~~~Dvt~~~~v~~~~~~~~~~~g~iDilvnnA   93 (264)
T d1spxa_          59 VNSVVADVTTDAGQDEILSTTLGKFGKLDILVNNA   93 (264)
T ss_dssp             EEEEECCTTSHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             eEEEEccCCCHHHHHHHHHHHHHHhCCCCEeeccc
Confidence            66666565431  1       12234567776653

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=95.06  E-value=0.01  Score=48.21  Aligned_cols=32  Identities=19%  Similarity=0.330  Sum_probs=30.1

Q ss_pred             cEEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565           33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (324)
Q Consensus        33 ~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d   64 (324)
                      +|+|||+|..|...|..|++.|+.+++|+|..
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~   33 (347)
T d1b5qa1           2 RVIVVGAGMSGISAAKRLSEAGITDLLILEAT   33 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHHTTCCCEEEECSS
T ss_pred             CEEEECCcHHHHHHHHHHHhCCCCcEEEEECC
Confidence            69999999999999999999999889999974

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=95.06  E-value=0.073  Score=41.83  Aligned_cols=76  Identities=13%  Similarity=0.163  Sum_probs=49.5

Q ss_pred             cCcEEEEcCchhHHH--HHHHHHHh-C--CCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHH----HHHHHHhhC
Q 020565           31 KSHILVCGMKGTVAE--FCKNIVLA-G--VGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEV----CCDSLKDFN  101 (324)
Q Consensus        31 ~~~VliiG~g~lGse--i~k~L~~~-G--v~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~----~~~~l~~ln  101 (324)
                      +-||.|||+|++|..  ++..|++. +  .+++.|+|-                      .+.|++.    +.......+
T Consensus         2 ~mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Di----------------------d~~~~~~~~~~~~~~~~~~~   59 (171)
T d1obba1           2 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDI----------------------DEERLDAILTIAKKYVEEVG   59 (171)
T ss_dssp             CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECS----------------------CHHHHHHHHHHHHHHHHHTT
T ss_pred             CcEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeC----------------------CchHHHHHHHHHHHHHHhcC
Confidence            458999999999975  34445533 2  358999887                      3334333    333444566


Q ss_pred             CCCeEeEeeCCCCCCchhhcCCccEEEEcCCC
Q 020565          102 PMVRVSVEKGDLSSLDGEFYDKFDVVVVSCCS  133 (324)
Q Consensus       102 p~v~v~~~~~~~~~~~~~~~~~~diVi~~~~~  133 (324)
                      +..++.....     ..+.++++|+||.+...
T Consensus        60 ~~~~i~~~td-----~~eaL~dad~Vv~~~~~   86 (171)
T d1obba1          60 ADLKFEKTMN-----LDDVIIDADFVINTAMV   86 (171)
T ss_dssp             CCCEEEEESC-----HHHHHTTCSEEEECCCT
T ss_pred             CCeEEEEeCC-----hhhcccCCCeEeeeccc
Confidence            6677666432     35678999999998764

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=95.05  E-value=0.024  Score=44.33  Aligned_cols=87  Identities=13%  Similarity=-0.002  Sum_probs=52.2

Q ss_pred             cEEEEcCchhHHHHHHHHHHhC-----CCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCC-CCeE
Q 020565           33 HILVCGMKGTVAEFCKNIVLAG-----VGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNP-MVRV  106 (324)
Q Consensus        33 ~VliiG~g~lGsei~k~L~~~G-----v~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp-~v~v  106 (324)
                      ||.|||+|++|...+-.....+     ++++.|+|-                      .+.|++.+.+..+.+.. ...+
T Consensus         2 KIaiIGaGs~g~~~~~~~l~~~~~~~~~~el~L~Di----------------------d~~k~~~~~d~~~~~~~~~~~~   59 (162)
T d1up7a1           2 RIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDI----------------------DEEKQKIVVDFVKRLVKDRFKV   59 (162)
T ss_dssp             EEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECS----------------------CHHHHHHHHHHHHHHHTTSSEE
T ss_pred             EEEEECCCHHHHHHHHHHHHhcccccCccEEEEEec----------------------CcHHHHHHHHHHHhhhccCceE
Confidence            6999999999877775433322     578999885                      33355555544444322 2333


Q ss_pred             eEeeCCCCCCchhhcCCccEEEEcCCCHH--HHHHHHHHHHh
Q 020565          107 SVEKGDLSSLDGEFYDKFDVVVVSCCSVT--TKKLINEKCRK  146 (324)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~diVi~~~~~~~--~~~~l~~~~~~  146 (324)
                      ..     +....+.+++.|+||.+.....  .+.+...+-.+
T Consensus        60 ~~-----t~~~~~~l~~aDvVVita~~~~~~~~~r~~~i~~~   96 (162)
T d1up7a1          60 LI-----SDTFEGAVVDAKYVIFQFRPGGLKGRENDEGIPLK   96 (162)
T ss_dssp             EE-----CSSHHHHHTTCSEEEECCCTTHHHHHHHHHHGGGG
T ss_pred             EE-----ecCcccccCCCCEEEEecccCCCCCcchHhhhhhh
Confidence            32     2234667899999999987543  23333344444

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.95  E-value=0.038  Score=47.55  Aligned_cols=64  Identities=17%  Similarity=0.192  Sum_probs=46.2

Q ss_pred             HHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCC---C
Q 020565           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNP---M  103 (324)
Q Consensus        28 ~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp---~  103 (324)
                      +|+++.++|.|+ +|+|.++|+.|+..|.. +.+.|.                      ...+.+.+++.|++..+   .
T Consensus         9 ~L~gKvalITGas~GIG~aia~~la~~Ga~-Vvi~~r----------------------~~~~l~~~~~el~~~~~~~~~   65 (297)
T d1yxma1           9 LLQGQVAIVTGGATGIGKAIVKELLELGSN-VVIASR----------------------KLERLKSAADELQANLPPTKQ   65 (297)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEES----------------------CHHHHHHHHHHHHHTSCTTCC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEEC----------------------CHHHHHHHHHHHHhhhccccC
Confidence            589999999996 68999999999999985 888775                      44466666666665433   2


Q ss_pred             CeEeEeeCCCC
Q 020565          104 VRVSVEKGDLS  114 (324)
Q Consensus       104 v~v~~~~~~~~  114 (324)
                      .++..+..+++
T Consensus        66 ~~~~~~~~Dvs   76 (297)
T d1yxma1          66 ARVIPIQCNIR   76 (297)
T ss_dssp             CCEEEEECCTT
T ss_pred             ceEEEEeccCC
Confidence            34555555544

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=94.95  E-value=0.011  Score=43.94  Aligned_cols=55  Identities=18%  Similarity=0.225  Sum_probs=40.3

Q ss_pred             cCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhC
Q 020565           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFN  101 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~ln  101 (324)
                      ..+|+|||.|.+|.|+|..|+..|.. +|+++...        +++ .   .   +..-++.+.+.+++.+
T Consensus        32 ~~~vvIiGgG~iG~E~A~~l~~~g~~-Vtlv~~~~--------~l~-~---~---d~~~~~~~~~~l~~~G   86 (122)
T d1xhca2          32 SGEAIIIGGGFIGLELAGNLAEAGYH-VKLIHRGA--------MFL-G---L---DEELSNMIKDMLEETG   86 (122)
T ss_dssp             HSEEEEEECSHHHHHHHHHHHHTTCE-EEEECSSS--------CCT-T---C---CHHHHHHHHHHHHHTT
T ss_pred             CCcEEEECCcHHHHHHHHHhhcccce-EEEEeccc--------ccc-C---C---CHHHHHHHHHHHHHCC
Confidence            47899999999999999999999975 99987632        111 1   2   4444566677777753

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=94.80  E-value=0.0063  Score=49.52  Aligned_cols=36  Identities=17%  Similarity=0.094  Sum_probs=32.4

Q ss_pred             HHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565           27 RRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        27 ~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      ..|.+++|.|+|+|.+|.++|+.|...|.. +..+|+
T Consensus        39 ~el~gk~vgIiG~G~IG~~va~~l~~fg~~-V~~~d~   74 (197)
T d1j4aa1          39 REVRDQVVGVVGTGHIGQVFMQIMEGFGAK-VITYDI   74 (197)
T ss_dssp             CCGGGSEEEEECCSHHHHHHHHHHHHTTCE-EEEECS
T ss_pred             ccccCCeEEEecccccchhHHHhHhhhccc-ccccCc
Confidence            458999999999999999999999999985 777776

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=94.80  E-value=0.018  Score=50.63  Aligned_cols=32  Identities=13%  Similarity=0.226  Sum_probs=26.0

Q ss_pred             cCcEEEEcCch-hHHHHHHHHHHhCCCcEEEEcC
Q 020565           31 KSHILVCGMKG-TVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        31 ~~~VliiG~g~-lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      +++|||.|..| +|+.+++.|...|. +++.+|.
T Consensus         1 ~K~vLITGatGfiGs~lv~~Ll~~g~-~V~~~~r   33 (357)
T d1db3a_           1 SKVALITGVTGQDGSYLAEFLLEKGY-EVHGIKR   33 (357)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECC
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCcC-EEEEEEC
Confidence            35677999655 99999999999996 4777776

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.78  E-value=0.013  Score=49.62  Aligned_cols=34  Identities=12%  Similarity=0.232  Sum_probs=30.7

Q ss_pred             cCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCc
Q 020565           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV   65 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~   65 (324)
                      +.+|+|||+|..|..+|..|++.|+ +++|+|...
T Consensus         2 k~~V~IvGaGp~Gl~~A~~L~~~G~-~v~vlE~~~   35 (292)
T d1k0ia1           2 KTQVAIIGAGPSGLLLGQLLHKAGI-DNVILERQT   35 (292)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHTC-CEEEECSSC
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCC-CEEEEeCCC
Confidence            5689999999999999999999999 599998753

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=94.75  E-value=0.091  Score=40.09  Aligned_cols=74  Identities=16%  Similarity=0.117  Sum_probs=47.4

Q ss_pred             cEEEEcC-chhHHHHHHHHHHh-C-CCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEe
Q 020565           33 HILVCGM-KGTVAEFCKNIVLA-G-VGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVE  109 (324)
Q Consensus        33 ~VliiG~-g~lGsei~k~L~~~-G-v~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~  109 (324)
                      ||.|+|+ |.+|+.++..|+.. | +.++.|+|.+                     .  +++..+--|+...........
T Consensus         2 KV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~---------------------~--~~~g~a~Dl~h~~~~~~~~~~   58 (145)
T d2cmda1           2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIA---------------------P--VTPGVAVDLSHIPTAVKIKGF   58 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSS---------------------T--THHHHHHHHHTSCSSCEEEEE
T ss_pred             EEEEEcCCChHHHHHHHHHHhCCCCCcEEEEeccc---------------------c--cchhHHHHHHCCccccCCcEE
Confidence            7999995 99999999988754 6 4679998741                     1  112223345555444444443


Q ss_pred             eCCCCCCchhhcCCccEEEEcCC
Q 020565          110 KGDLSSLDGEFYDKFDVVVVSCC  132 (324)
Q Consensus       110 ~~~~~~~~~~~~~~~diVi~~~~  132 (324)
                      .   .....+.+++.|+||.+..
T Consensus        59 ~---~~~~~~~~~~aDvvvitaG   78 (145)
T d2cmda1          59 S---GEDATPALEGADVVLISAG   78 (145)
T ss_dssp             C---SSCCHHHHTTCSEEEECCS
T ss_pred             E---cCCCccccCCCCEEEECCC
Confidence            2   1223456789999998875

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=94.73  E-value=0.12  Score=40.04  Aligned_cols=33  Identities=21%  Similarity=0.168  Sum_probs=29.8

Q ss_pred             cCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      ..+|+|.|+||+|...+..+..+|...+..+|.
T Consensus        29 G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~   61 (176)
T d2fzwa2          29 GSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDI   61 (176)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTCSEEEEECS
T ss_pred             CCEEEEecchhHHHHHHHHHHHHhcCceEEEcc
Confidence            457999999999999999999999998888776

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=94.72  E-value=0.015  Score=43.95  Aligned_cols=57  Identities=12%  Similarity=0.124  Sum_probs=41.4

Q ss_pred             cCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhC
Q 020565           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFN  101 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~ln  101 (324)
                      .++|+|||.|-+|.|+|..|...|.. +++++....-   +.+       ..   ++.-++.+.+.+++.+
T Consensus        35 ~k~v~VIGgG~iG~E~A~~l~~~g~~-Vtvie~~~~~---l~~-------~~---~~~~~~~~~~~~~~~G   91 (133)
T d1q1ra2          35 DNRLVVIGGGYIGLEVAATAIKANMH-VTLLDTAARV---LER-------VT---APPVSAFYEHLHREAG   91 (133)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCE-EEEECSSSST---TTT-------TS---CHHHHHHHHHHHHHHT
T ss_pred             CCEEEEECCchHHHHHHHHHHhhCcc-eeeeeecccc---ccc-------cc---chhhhhhhhhcccccc
Confidence            57899999999999999999999986 9999873321   111       11   4445566677777654

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=94.61  E-value=0.045  Score=46.66  Aligned_cols=36  Identities=8%  Similarity=0.109  Sum_probs=31.3

Q ss_pred             HHHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           27 RRLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        27 ~~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      .+|++++++|.|+ +|+|..+|+.|+..|. ++.+.|.
T Consensus        21 ~~l~gK~alITGas~GIG~aiA~~la~~Ga-~Vii~~r   57 (294)
T d1w6ua_          21 NSFQGKVAFITGGGTGLGKGMTTLLSSLGA-QCVIASR   57 (294)
T ss_dssp             TTTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEEC
Confidence            3688899999995 7999999999999996 4888875

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=94.56  E-value=0.038  Score=46.49  Aligned_cols=52  Identities=15%  Similarity=0.186  Sum_probs=40.8

Q ss_pred             HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCC
Q 020565           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPM  103 (324)
Q Consensus        29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~  103 (324)
                      |++++|+|.|+ +|+|.++++.|+..|. ++.++|.                      ...+.+.+.+.+++....
T Consensus         4 L~gK~alITGas~GIG~aia~~la~~G~-~V~i~~r----------------------~~~~l~~~~~~~~~~~~~   56 (258)
T d1ae1a_           4 LKGTTALVTGGSKGIGYAIVEELAGLGA-RVYTCSR----------------------NEKELDECLEIWREKGLN   56 (258)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEES----------------------CHHHHHHHHHHHHHTTCC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEEC----------------------CHHHHHHHHHHHHhcCCC
Confidence            67899999995 7899999999999998 5888876                      334556666677665543

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=94.55  E-value=0.021  Score=41.88  Aligned_cols=57  Identities=12%  Similarity=0.059  Sum_probs=38.0

Q ss_pred             cCcEEEEcCchhHHHHHHHHHHhCC--CcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhC
Q 020565           31 KSHILVCGMKGTVAEFCKNIVLAGV--GSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFN  101 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~~~Gv--~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~ln  101 (324)
                      ..+++|||.|.+|.|+|..|+..+-  .++++++..    +.+-++       .   .+.-++.+.+.+++..
T Consensus        18 p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~----~~il~~-------~---d~~~~~~~~~~l~~~G   76 (117)
T d1feca2          18 PKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRG----DMILRG-------F---DSELRKQLTEQLRANG   76 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESS----SSSSTT-------S---CHHHHHHHHHHHHHTT
T ss_pred             CCeEEEECCChHHHHHHHHhHhhcccccccceeccc----cccccc-------c---cchhhHHHHHHHhhCc
Confidence            3689999999999999998887632  258888752    122221       1   3334566677777653

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=94.55  E-value=0.095  Score=40.57  Aligned_cols=87  Identities=8%  Similarity=0.067  Sum_probs=48.8

Q ss_pred             cEEEEcCchhHHH-HHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEeeC
Q 020565           33 HILVCGMKGTVAE-FCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKG  111 (324)
Q Consensus        33 ~VliiG~g~lGse-i~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~~  111 (324)
                      ||.|||+|..|.. .+..|...+--.+.++|.                      ...+++.+++..    +...   ...
T Consensus         3 rvgiiG~G~~~~~~~~~~l~~~~~~~~~~~d~----------------------~~~~~~~~~~~~----~~~~---~~~   53 (167)
T d1xeaa1           3 KIAMIGLGDIAQKAYLPVLAQWPDIELVLCTR----------------------NPKVLGTLATRY----RVSA---TCT   53 (167)
T ss_dssp             EEEEECCCHHHHHTHHHHHTTSTTEEEEEECS----------------------CHHHHHHHHHHT----TCCC---CCS
T ss_pred             EEEEEcCCHHHHHHHHHHHHhCCCcEEEEEEC----------------------CHHHHHHHHHhc----cccc---ccc
Confidence            7999999999976 566776654434555554                      333444333332    2111   111


Q ss_pred             CCCCCchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEE
Q 020565          112 DLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFY  154 (324)
Q Consensus       112 ~~~~~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i  154 (324)
                      ++.+..+   .+.|+|+.|+-+ .....+-..|-+  .+++++
T Consensus        54 ~~~~ll~---~~iD~V~I~tp~-~~H~~~~~~al~--~gk~V~   90 (167)
T d1xeaa1          54 DYRDVLQ---YGVDAVMIHAAT-DVHSTLAAFFLH--LGIPTF   90 (167)
T ss_dssp             STTGGGG---GCCSEEEECSCG-GGHHHHHHHHHH--TTCCEE
T ss_pred             cHHHhcc---cccceecccccc-cccccccccccc--cccccc
Confidence            2222211   368999888755 455556666766  677654

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.52  E-value=0.045  Score=45.81  Aligned_cols=80  Identities=18%  Similarity=0.288  Sum_probs=55.4

Q ss_pred             hcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeE
Q 020565           30 SKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV  108 (324)
Q Consensus        30 ~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~  108 (324)
                      ..+.++|.|. +|+|.++|+.|+..|.. +.+.|.                      ...+.+.+.+.+.+..+..++..
T Consensus         2 ~GKvalITGas~GIG~aia~~la~~Ga~-V~i~~r----------------------~~~~~~~~~~~l~~~~~~~~~~~   58 (254)
T d2gdza1           2 NGKVALVTGAAQGIGRAFAEALLLKGAK-VALVDW----------------------NLEAGVQCKAALHEQFEPQKTLF   58 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEES----------------------CHHHHHHHHHHHTTTSCGGGEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEEC----------------------CHHHHHHHHHHHHHhcCCCcEEE
Confidence            4567788886 78999999999999975 888775                      44456666667776666667776


Q ss_pred             eeCCCCCCc---------hhhcCCccEEEEcCC
Q 020565          109 EKGDLSSLD---------GEFYDKFDVVVVSCC  132 (324)
Q Consensus       109 ~~~~~~~~~---------~~~~~~~diVi~~~~  132 (324)
                      +..++++..         .+.+...|++|.+..
T Consensus        59 ~~~Dv~~~~~v~~~~~~~~~~~G~iDilVnnAg   91 (254)
T d2gdza1          59 IQCDVADQQQLRDTFRKVVDHFGRLDILVNNAG   91 (254)
T ss_dssp             EECCTTSHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             EEeecCCHHHHHHHHHHHHHHcCCcCeeccccc
Confidence            666665421         122356788876653

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.51  E-value=0.016  Score=43.17  Aligned_cols=54  Identities=15%  Similarity=0.161  Sum_probs=39.5

Q ss_pred             CcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhh
Q 020565           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDF  100 (324)
Q Consensus        32 ~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~l  100 (324)
                      ++|+|||.|.+|+|+|..|+..|.. +|+++...    .+-++       .   .+.-++.+.+.+++.
T Consensus        23 k~vvIvGgG~iG~E~A~~l~~~G~~-Vtlv~~~~----~~l~~-------~---d~~~~~~~~~~l~~~   76 (125)
T d3grsa2          23 GRSVIVGAGYIAVEMAGILSALGSK-TSLMIRHD----KVLRS-------F---DSMISTNCTEELENA   76 (125)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCE-EEEECSSS----SSCTT-------S---CHHHHHHHHHHHHHT
T ss_pred             CEEEEEcCCccHHHHHHHHhcCCcE-EEEEeecc----ccccc-------h---hhHHHHHHHHHHHHC
Confidence            6899999999999999999999985 99987721    11111       1   334566677777664

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=94.47  E-value=0.034  Score=46.73  Aligned_cols=62  Identities=18%  Similarity=0.269  Sum_probs=44.9

Q ss_pred             HHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeE
Q 020565           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRV  106 (324)
Q Consensus        28 ~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v  106 (324)
                      +|+.+.++|.|. +|+|.++|+.|+..|.. +.+.|.                      .+.+.+.+++.+++..+.  +
T Consensus         8 ~L~gK~alITGas~GIG~aia~~la~~Ga~-V~~~~r----------------------~~~~~~~~~~~l~~~g~~--~   62 (255)
T d1fmca_           8 RLDGKCAIITGAGAGIGKEIAITFATAGAS-VVVSDI----------------------NADAANHVVDEIQQLGGQ--A   62 (255)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHTTTCE-EEEEES----------------------CHHHHHHHHHHHHHTTCC--E
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEEC----------------------CHHHHHHHHHHHHHcCCc--E
Confidence            367889999996 68999999999999985 888765                      344666677777776543  3


Q ss_pred             eEeeCCCC
Q 020565          107 SVEKGDLS  114 (324)
Q Consensus       107 ~~~~~~~~  114 (324)
                      ..+..+++
T Consensus        63 ~~~~~Dvs   70 (255)
T d1fmca_          63 FACRCDIT   70 (255)
T ss_dssp             EEEECCTT
T ss_pred             EEEEccCC
Confidence            34444444

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=94.41  E-value=0.081  Score=43.27  Aligned_cols=33  Identities=21%  Similarity=0.366  Sum_probs=30.4

Q ss_pred             hcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        30 ~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      ...+|+|||.|..|...|..|++.|.. ++|+|.
T Consensus        48 ~~k~VvIIGaGpAGl~aA~~l~~~G~~-v~l~E~   80 (233)
T d1djqa3          48 NKDSVLIVGAGPSGSEAARVLMESGYT-VHLTDT   80 (233)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHTTCE-EEEECS
T ss_pred             CCceEEEEcccHHHHHHHHHHHHhccc-eeeEee
Confidence            568899999999999999999999985 999986

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=94.33  E-value=0.13  Score=42.89  Aligned_cols=80  Identities=14%  Similarity=0.287  Sum_probs=54.6

Q ss_pred             HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEe
Q 020565           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS  107 (324)
Q Consensus        29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~  107 (324)
                      |+++.|+|.|. +|+|.++|+.|+..|..-+.+.+.+                      ...  ...+.++..++..++.
T Consensus         3 l~gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~----------------------~~~--~~~~~~~~~~~~~~~~   58 (254)
T d1sbya1           3 LTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRV----------------------ENP--TALAELKAINPKVNIT   58 (254)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESS----------------------CCH--HHHHHHHHHCTTSEEE
T ss_pred             CCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCc----------------------ccH--HHHHHHHhhCCCCCEE
Confidence            68899999996 5899999999999999855554431                      111  1234567788888887


Q ss_pred             EeeCCCCC-C--c-------hhhcCCccEEEEcCC
Q 020565          108 VEKGDLSS-L--D-------GEFYDKFDVVVVSCC  132 (324)
Q Consensus       108 ~~~~~~~~-~--~-------~~~~~~~diVi~~~~  132 (324)
                      .+..++.. .  .       .+.+...|++|.+..
T Consensus        59 ~~~~d~~~~~~~~~~~~~~~~~~~g~iDilvnnAG   93 (254)
T d1sbya1          59 FHTYDVTVPVAESKKLLKKIFDQLKTVDILINGAG   93 (254)
T ss_dssp             EEECCTTSCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             EEEeecCCCHHHHHHHHHHHHHHcCCCCEEEeCCC
Confidence            77766642 1  1       112356788887653

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=94.32  E-value=0.021  Score=44.23  Aligned_cols=35  Identities=26%  Similarity=0.260  Sum_probs=30.8

Q ss_pred             cCcEEEEcCchhHHHHHHHHHHhCCC-cEEEEcCCc
Q 020565           31 KSHILVCGMKGTVAEFCKNIVLAGVG-SLTLMDDRV   65 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~~~Gv~-~i~lvD~d~   65 (324)
                      .+||+|||.|.+|.++|..|.+.|-. +|+++|.+.
T Consensus         2 gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~   37 (186)
T d1fcda1           2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNT   37 (186)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred             CCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence            36899999999999999999999963 799998754

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=94.28  E-value=0.056  Score=39.51  Aligned_cols=57  Identities=18%  Similarity=0.043  Sum_probs=41.0

Q ss_pred             cCcEEEEcCchhHHHHHHHHHHhCCC--cEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhC
Q 020565           31 KSHILVCGMKGTVAEFCKNIVLAGVG--SLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFN  101 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~~~Gv~--~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~ln  101 (324)
                      ..+++|||.|.+|+|+|..|...|..  ++|+++..    +.+-++       .   ...-++.+.+.+++.+
T Consensus        20 p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~----~~iL~~-------~---d~~~~~~l~~~l~~~G   78 (117)
T d1aoga2          20 PRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRG----EMILRG-------F---DHTLREELTKQLTANG   78 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESS----SSSSTT-------S---CHHHHHHHHHHHHHTT
T ss_pred             CCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEecc----chhhcc-------c---chHHHHHHHHHHHhcC
Confidence            36899999999999999999888864  68998762    111121       1   4455677788888753

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.27  E-value=0.093  Score=43.59  Aligned_cols=52  Identities=17%  Similarity=0.114  Sum_probs=41.9

Q ss_pred             HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCC
Q 020565           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPM  103 (324)
Q Consensus        29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~  103 (324)
                      |..+.++|.|+ +|+|.++++.|+..|.. +.++|.                      .+.|.+.+++.+++.++.
T Consensus         5 l~Gkv~lITGas~GIG~~ia~~la~~G~~-V~l~~r----------------------~~~~l~~~~~~~~~~~~~   57 (244)
T d1yb1a_           5 VTGEIVLITGAGHGIGRLTAYEFAKLKSK-LVLWDI----------------------NKHGLEETAAKCKGLGAK   57 (244)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEES----------------------CHHHHHHHHHHHHHTTCC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEEC----------------------CHHHHHHHHHHHHhcCCc
Confidence            56678888897 57999999999999986 888765                      555777888888877654

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=94.20  E-value=0.013  Score=46.19  Aligned_cols=33  Identities=9%  Similarity=0.108  Sum_probs=30.2

Q ss_pred             cCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      ..+|+|+|+|++|...+..+...|..+++.+|.
T Consensus        33 g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~   65 (172)
T d1h2ba2          33 GAYVAIVGVGGLGHIAVQLLKVMTPATVIALDV   65 (172)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHCCCEEEEEES
T ss_pred             CCEEEEeCCChHHHHHHHHHHhhcCcccccccc
Confidence            578999999999999999999999998888877

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=94.19  E-value=0.02  Score=42.30  Aligned_cols=31  Identities=16%  Similarity=0.128  Sum_probs=28.3

Q ss_pred             CcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        32 ~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      .+++|||.|.+|+|+|..|+..|.. ++++..
T Consensus        23 ~~i~IiG~G~ig~E~A~~l~~~G~~-Vtiv~~   53 (119)
T d3lada2          23 GKLGVIGAGVIGLELGSVWARLGAE-VTVLEA   53 (119)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             CeEEEECCChHHHHHHHHHHHcCCc-eEEEEe
Confidence            7899999999999999999999986 888764

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.17  E-value=0.12  Score=40.65  Aligned_cols=89  Identities=13%  Similarity=0.151  Sum_probs=50.9

Q ss_pred             cEEEEcCchhHHHHHHHHHHhCCCcEE-EEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEeeC
Q 020565           33 HILVCGMKGTVAEFCKNIVLAGVGSLT-LMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKG  111 (324)
Q Consensus        33 ~VliiG~g~lGsei~k~L~~~Gv~~i~-lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~~  111 (324)
                      ||.|||||.+|...++.|...+=-+++ +.|.                      ...|++.+++... ..+..++  + .
T Consensus         3 ki~iIG~G~~g~~~~~~l~~~~~~~i~ai~d~----------------------~~~~~~~~~~~~~-~~~~~~~--~-~   56 (184)
T d1ydwa1           3 RIGVMGCADIARKVSRAIHLAPNATISGVASR----------------------SLEKAKAFATANN-YPESTKI--H-G   56 (184)
T ss_dssp             EEEEESCCTTHHHHHHHHHHCTTEEEEEEECS----------------------SHHHHHHHHHHTT-CCTTCEE--E-S
T ss_pred             EEEEEcCCHHHHHHHHHHHhCCCCEEEEEEeC----------------------Cccccccchhccc-cccceee--c-C
Confidence            799999999999999999876322232 3343                      3334444332211 1122222  1 1


Q ss_pred             CCCCCchhhc--CCccEEEEcCCCHHHHHHHHHHHHhccCCccEE
Q 020565          112 DLSSLDGEFY--DKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFY  154 (324)
Q Consensus       112 ~~~~~~~~~~--~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i  154 (324)
                      +    .++++  .+.|+|+.|+.+ .....+...|.+  ++++++
T Consensus        57 ~----~~~ll~~~~iD~v~I~tp~-~~h~~~~~~~l~--~g~~v~   94 (184)
T d1ydwa1          57 S----YESLLEDPEIDALYVPLPT-SLHVEWAIKAAE--KGKHIL   94 (184)
T ss_dssp             S----HHHHHHCTTCCEEEECCCG-GGHHHHHHHHHT--TTCEEE
T ss_pred             c----HHHhhhccccceeeecccc-hhhcchhhhhhh--ccceee
Confidence            1    22333  468999988755 455566667766  777554

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=94.15  E-value=0.11  Score=40.26  Aligned_cols=34  Identities=18%  Similarity=0.085  Sum_probs=30.6

Q ss_pred             hcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        30 ~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      ...+|+|+|+|++|.-.+..+...|..+++.+|.
T Consensus        28 ~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~   61 (175)
T d1cdoa2          28 PGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDL   61 (175)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECS
T ss_pred             CCCEEEEEecCCccchHHHHHHHHhhchheeecc
Confidence            3466999999999999999999999999999887

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=94.09  E-value=0.022  Score=42.51  Aligned_cols=31  Identities=16%  Similarity=0.118  Sum_probs=29.0

Q ss_pred             CcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        32 ~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      .+++|+|.|-+|+|+|..+...|.. +|+++.
T Consensus        27 ~~vvIiGgG~IG~E~A~~~~~~G~~-Vtive~   57 (125)
T d1ojta2          27 GKLLIIGGGIIGLEMGTVYSTLGSR-LDVVEM   57 (125)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHHTCE-EEEECS
T ss_pred             CeEEEECCCHHHHHHHHHhhcCCCE-EEEEEe
Confidence            6899999999999999999999985 999877

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=94.09  E-value=0.024  Score=45.89  Aligned_cols=37  Identities=16%  Similarity=0.044  Sum_probs=32.9

Q ss_pred             HHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565           27 RRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (324)
Q Consensus        27 ~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d   64 (324)
                      ..|.+++|.|+|+|.+|.++++.|...|+. +..+|+.
T Consensus        41 ~~l~~ktvgIiG~G~IG~~va~~l~~fg~~-v~~~d~~   77 (199)
T d1dxya1          41 KELGQQTVGVMGTGHIGQVAIKLFKGFGAK-VIAYDPY   77 (199)
T ss_dssp             CCGGGSEEEEECCSHHHHHHHHHHHHTTCE-EEEECSS
T ss_pred             ccccceeeeeeeccccccccccccccccee-eeccCCc
Confidence            468899999999999999999999999987 7777873

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=94.08  E-value=0.075  Score=44.34  Aligned_cols=34  Identities=21%  Similarity=0.269  Sum_probs=30.1

Q ss_pred             HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      |+++.++|.|. +|+|.++|+.|+..|.. +.+.|.
T Consensus         3 l~gK~~lITGas~GIG~aia~~la~~Ga~-V~i~~r   37 (251)
T d1vl8a_           3 LRGRVALVTGGSRGLGFGIAQGLAEAGCS-VVVASR   37 (251)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEEC
Confidence            67899999996 68999999999999985 888775

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=94.03  E-value=0.014  Score=45.76  Aligned_cols=33  Identities=15%  Similarity=0.089  Sum_probs=29.4

Q ss_pred             cCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           31 KSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        31 ~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      ..+|+|+|+ |++|..++..+...|..+++++|.
T Consensus        28 g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~   61 (170)
T d1jvba2          28 TKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDV   61 (170)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEES
T ss_pred             CCEEEEEeccccceeeeeeccccccccccccccc
Confidence            457999996 999999999999999998999887

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.01  E-value=0.04  Score=43.02  Aligned_cols=50  Identities=8%  Similarity=0.060  Sum_probs=39.7

Q ss_pred             cEEEE-cCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCe
Q 020565           33 HILVC-GMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVR  105 (324)
Q Consensus        33 ~Vlii-G~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~  105 (324)
                      ||.|+ |.|++|..+|+.|+..|.. +++++.                      ...|++.+.+.+.+.-+...
T Consensus         2 ki~vigGaG~iG~alA~~la~~G~~-V~l~~R----------------------~~e~~~~l~~~i~~~~~~~~   52 (212)
T d1jaya_           2 RVALLGGTGNLGKGLALRLATLGHE-IVVGSR----------------------REEKAEAKAAEYRRIAGDAS   52 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCE-EEEEES----------------------SHHHHHHHHHHHHHHHSSCC
T ss_pred             EEEEEeCCcHHHHHHHHHHHHCCCE-EEEEEC----------------------CHHHHHHHHHHHHhcCCCce
Confidence            68999 7999999999999999987 777765                      44577778888876654433

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=94.01  E-value=0.03  Score=46.21  Aligned_cols=33  Identities=18%  Similarity=0.125  Sum_probs=30.0

Q ss_pred             cCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d   64 (324)
                      ..||+|||.|..|..+|..|++.|+ +++|+|..
T Consensus         4 ~~kV~IiGaG~aGl~~A~~L~~~G~-~v~v~Er~   36 (265)
T d2voua1           4 TDRIAVVGGSISGLTAALMLRDAGV-DVDVYERS   36 (265)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSS
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCC-CEEEEeCC
Confidence            4689999999999999999999999 59999863

>d1rq2a1 c.32.1.1 (A:8-205) Cell-division protein FtsZ {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.00  E-value=0.033  Score=45.09  Aligned_cols=39  Identities=13%  Similarity=0.190  Sum_probs=30.8

Q ss_pred             CcEEEEcCchhHHHHHHHHHHhCCC--cEEEEcCCcccccc
Q 020565           32 SHILVCGMKGTVAEFCKNIVLAGVG--SLTLMDDRVVTEEA   70 (324)
Q Consensus        32 ~~VliiG~g~lGsei~k~L~~~Gv~--~i~lvD~d~v~~~n   70 (324)
                      ++|-|||+||.|+.++.+|...|+.  ++..+|.|.-..+.
T Consensus         2 a~IkViGvGGaG~n~vn~~~~~~~~~v~~iainTD~~~L~~   42 (198)
T d1rq2a1           2 AVIKVVGIGGGGVNAVNRMIEQGLKGVEFIAINTDAQALLM   42 (198)
T ss_dssp             CCEEEEEEHHHHHHHHHHHHHTTCCSEEEEEEESCHHHHHH
T ss_pred             CeEEEEEeCchHHHHHHHHHHcCCCCceEEEEcchHHHHhc
Confidence            5788999999999999999999986  45556776544433

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=93.98  E-value=0.029  Score=44.18  Aligned_cols=90  Identities=17%  Similarity=0.038  Sum_probs=52.3

Q ss_pred             CcEEEEcCchhHH--HHHHHHHHh---CCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHH----HHHhhCC
Q 020565           32 SHILVCGMKGTVA--EFCKNIVLA---GVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCD----SLKDFNP  102 (324)
Q Consensus        32 ~~VliiG~g~lGs--ei~k~L~~~---Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~----~l~~lnp  102 (324)
                      .||.|||+|++|.  .++..+...   .+++|.|+|-+.                    ++.|.+++-.    ...+.+.
T Consensus         2 ~KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e--------------------~~~~~~~~d~~~~~~~~~~~~   61 (169)
T d1s6ya1           2 LKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPE--------------------GKEKLEIVGALAKRMVEKAGV   61 (169)
T ss_dssp             EEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGG--------------------GHHHHHHHHHHHHHHHHHTTC
T ss_pred             cEEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCc--------------------cHHHHHHHHHHHHHHHHhcCC
Confidence            4799999998764  333333332   356899988621                    3333443332    2345566


Q ss_pred             CCeEeEeeCCCCCCchhhcCCccEEEEcCCCHH--HHHHHHHHHHh
Q 020565          103 MVRVSVEKGDLSSLDGEFYDKFDVVVVSCCSVT--TKKLINEKCRK  146 (324)
Q Consensus       103 ~v~v~~~~~~~~~~~~~~~~~~diVi~~~~~~~--~~~~l~~~~~~  146 (324)
                      .+++...+.     ..+.++++|+||.+.....  ...+...+-.+
T Consensus        62 ~~~~~~~td-----~~~al~gaDvVv~ta~~~~~~~~~r~~~i~~~  102 (169)
T d1s6ya1          62 PIEIHLTLD-----RRRALDGADFVTTQFRVGGLEARAKDERIPLK  102 (169)
T ss_dssp             CCEEEEESC-----HHHHHTTCSEEEECCCTTHHHHHHHHHHTGGG
T ss_pred             CceeeecCC-----chhhcCCCCEEEEccccCCCCCeehhhhhhhh
Confidence            666655432     2456789999999987543  23334444444

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=93.94  E-value=0.064  Score=44.79  Aligned_cols=51  Identities=18%  Similarity=0.216  Sum_probs=39.2

Q ss_pred             HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCC
Q 020565           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNP  102 (324)
Q Consensus        29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp  102 (324)
                      |.++.++|.|. +|+|.++|+.|+..|.. +.++|.                      .+.+++.+++.+++.+.
T Consensus         8 lenKvalITGas~GIG~a~a~~la~~Ga~-V~~~~r----------------------~~~~l~~~~~~l~~~g~   59 (251)
T d2c07a1           8 GENKVALVTGAGRGIGREIAKMLAKSVSH-VICISR----------------------TQKSCDSVVDEIKSFGY   59 (251)
T ss_dssp             CSSCEEEEESTTSHHHHHHHHHHTTTSSE-EEEEES----------------------SHHHHHHHHHHHHTTTC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCCE-EEEEEC----------------------CHHHHHHHHHHHHhcCC
Confidence            56888889896 68999999999999974 888765                      33456666677766554

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=93.92  E-value=0.027  Score=41.33  Aligned_cols=33  Identities=18%  Similarity=0.184  Sum_probs=29.5

Q ss_pred             hcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        30 ~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      ..++|+|+|.|.+|+|+|..|++.|.. +++++.
T Consensus        21 ~~~~vvVvGgG~ig~E~A~~l~~~g~~-vt~i~~   53 (121)
T d1mo9a2          21 PGSTVVVVGGSKTAVEYGCFFNATGRR-TVMLVR   53 (121)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCE-EEEECS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcchh-heEeec
Confidence            458999999999999999999999965 888876

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=93.88  E-value=0.09  Score=40.42  Aligned_cols=77  Identities=13%  Similarity=0.063  Sum_probs=50.0

Q ss_pred             cEEEEcC-chhHHHHHHHHHHhCCCc------EEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCe
Q 020565           33 HILVCGM-KGTVAEFCKNIVLAGVGS------LTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVR  105 (324)
Q Consensus        33 ~VliiG~-g~lGsei~k~L~~~Gv~~------i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~  105 (324)
                      ||.|+|+ |.+|+.++..|+..++-.      +.++|.                 +.   ...+.+.....+........
T Consensus         6 KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~-----------------~~---~~~~~~~~~~~~~~~~~~~~   65 (154)
T d1y7ta1           6 RVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEI-----------------PQ---AMKALEGVVMELEDCAFPLL   65 (154)
T ss_dssp             EEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECC-----------------GG---GHHHHHHHHHHHHTTTCTTE
T ss_pred             EEEEECCCCHHHHHHHHHHHhccccccccchhHhHhcc-----------------cc---chhhHcCchhhhhccccccc
Confidence            8999997 999999999999988632      222222                 11   44466666666666554332


Q ss_pred             EeEeeCCCCCCchhhcCCccEEEEcCC
Q 020565          106 VSVEKGDLSSLDGEFYDKFDVVVVSCC  132 (324)
Q Consensus       106 v~~~~~~~~~~~~~~~~~~diVi~~~~  132 (324)
                      -....   .....+.+++.|+||.+.+
T Consensus        66 ~~~~~---~~~~~~~~~~advViitaG   89 (154)
T d1y7ta1          66 AGLEA---TDDPKVAFKDADYALLVGA   89 (154)
T ss_dssp             EEEEE---ESCHHHHTTTCSEEEECCC
T ss_pred             ccccc---CCchhhhcccccEEEeecC
Confidence            22221   1233567889999999875

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=93.88  E-value=0.026  Score=45.13  Aligned_cols=33  Identities=12%  Similarity=0.007  Sum_probs=29.9

Q ss_pred             CcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCc
Q 020565           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV   65 (324)
Q Consensus        32 ~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~   65 (324)
                      ++|.|||+|-+|+.+|..++++|.. ++++|.+.
T Consensus         5 ~~vaViGaG~mG~~iA~~~a~~G~~-V~l~D~~~   37 (186)
T d1wdka3           5 KQAAVLGAGIMGGGIAYQSASKGTP-ILMKDINE   37 (186)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTTCC-EEEECSSH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCe-EEEEECCH
Confidence            4699999999999999999999986 99999853

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=93.87  E-value=0.32  Score=41.75  Aligned_cols=79  Identities=13%  Similarity=0.022  Sum_probs=48.3

Q ss_pred             cCcEEEEcCch-hHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEe
Q 020565           31 KSHILVCGMKG-TVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVE  109 (324)
Q Consensus        31 ~~~VliiG~g~-lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~  109 (324)
                      .++|||.|..| +|+.+++.|...|..-+.+++                       ...|.+-+.+......+.-.....
T Consensus        11 gk~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR-----------------------~~~~~~~~~~~~~~~~~~~~~~~~   67 (342)
T d1y1pa1          11 GSLVLVTGANGFVASHVVEQLLEHGYKVRGTAR-----------------------SASKLANLQKRWDAKYPGRFETAV   67 (342)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEES-----------------------SHHHHHHHHHHHHHHSTTTEEEEE
T ss_pred             cCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeC-----------------------CchhHHHHHHhhhccccccccEEE
Confidence            58999999877 999999999999975333322                       112333333333334444333444


Q ss_pred             eCCCCC--CchhhcCCccEEEEcCC
Q 020565          110 KGDLSS--LDGEFYDKFDVVVVSCC  132 (324)
Q Consensus       110 ~~~~~~--~~~~~~~~~diVi~~~~  132 (324)
                      ..++.+  ...+.+.++|.|+.+..
T Consensus        68 ~~Dl~~~~~~~~~~~~~~~v~~~a~   92 (342)
T d1y1pa1          68 VEDMLKQGAYDEVIKGAAGVAHIAS   92 (342)
T ss_dssp             CSCTTSTTTTTTTTTTCSEEEECCC
T ss_pred             eccccchhhhhhhcccchhhhhhcc
Confidence            445543  23456788899886654

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.82  E-value=0.026  Score=46.85  Aligned_cols=33  Identities=24%  Similarity=0.358  Sum_probs=30.5

Q ss_pred             cEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCc
Q 020565           33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV   65 (324)
Q Consensus        33 ~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~   65 (324)
                      +|+|||.|..|..+|..|.+.|+..++|++...
T Consensus         3 ~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~   35 (288)
T d3c96a1           3 DILIAGAGIGGLSCALALHQAGIGKVTLLESSS   35 (288)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEEESSS
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence            799999999999999999999998899998743

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.80  E-value=0.03  Score=45.56  Aligned_cols=32  Identities=9%  Similarity=0.086  Sum_probs=28.8

Q ss_pred             CcEEEEcCchhHHHHHHHHHHhCCC------cEEEEcC
Q 020565           32 SHILVCGMKGTVAEFCKNIVLAGVG------SLTLMDD   63 (324)
Q Consensus        32 ~~VliiG~g~lGsei~k~L~~~Gv~------~i~lvD~   63 (324)
                      .||+|||+|..|-..|..|++.|..      +++|+|.
T Consensus         3 ~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~   40 (239)
T d1lqta2           3 YYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEM   40 (239)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEES
T ss_pred             cEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEec
Confidence            5899999999999999999999953      6899987

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=93.75  E-value=0.025  Score=46.97  Aligned_cols=31  Identities=13%  Similarity=0.247  Sum_probs=29.2

Q ss_pred             CcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        32 ~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      +||+|||.|..|...|..|++.|+ +++|+|.
T Consensus         2 KkV~IIGaG~aGL~aA~~La~~G~-~V~vlE~   32 (373)
T d1seza1           2 KRVAVIGAGVSGLAAAYKLKIHGL-NVTVFEA   32 (373)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTSC-EEEEECS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCC-CEEEEeC
Confidence            689999999999999999999999 5999986

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=93.73  E-value=0.025  Score=47.29  Aligned_cols=35  Identities=9%  Similarity=0.026  Sum_probs=31.3

Q ss_pred             CcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccc
Q 020565           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVT   67 (324)
Q Consensus        32 ~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~   67 (324)
                      ..|+|||.|-+|+.+|..|++.|. +++|+|.+.+.
T Consensus         5 ~DvvIIGaGi~Gls~A~~La~~G~-~V~vlE~~~~~   39 (276)
T d1ryia1           5 YEAVVIGGGIIGSAIAYYLAKENK-NTALFESGTMG   39 (276)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSTT
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCC-cEEEEeCCCCC
Confidence            459999999999999999999996 69999997654

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=93.73  E-value=0.071  Score=44.87  Aligned_cols=36  Identities=22%  Similarity=0.242  Sum_probs=31.6

Q ss_pred             HHHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           27 RRLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        27 ~~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      +||+++.++|.|. +|+|.++|+.|+..|.. +.++|.
T Consensus         2 nrL~gKvalITGas~GIG~aia~~la~~Ga~-V~i~~r   38 (268)
T d2bgka1           2 NRLQDKVAIITGGAGGIGETTAKLFVRYGAK-VVIADI   38 (268)
T ss_dssp             CTTTTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEEC
Confidence            3789999999996 68999999999999975 888776

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=93.72  E-value=0.062  Score=41.42  Aligned_cols=77  Identities=17%  Similarity=0.182  Sum_probs=47.7

Q ss_pred             CcEEEEcC-chhHHHHHHHHHHhCCC------cEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhh-CCC
Q 020565           32 SHILVCGM-KGTVAEFCKNIVLAGVG------SLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDF-NPM  103 (324)
Q Consensus        32 ~~VliiG~-g~lGsei~k~L~~~Gv~------~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~l-np~  103 (324)
                      .||.|||+ |.+|+.++..|+..++-      .+.++|.+                 -   .+.|++.+.-.+... .+.
T Consensus         4 ~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~-----------------~---~~~~~~~l~~~~~~~~~~~   63 (154)
T d5mdha1           4 IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDIT-----------------P---MMGVLDGVLMELQDCALPL   63 (154)
T ss_dssp             EEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCG-----------------G---GHHHHHHHHHHHHHTCCTT
T ss_pred             eEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCc-----------------c---chhhhhhhhhhhccccccc
Confidence            48999995 99999999999876652      34444430                 0   344555555555543 333


Q ss_pred             CeEeEeeCCCCCCchhhcCCccEEEEcCC
Q 020565          104 VRVSVEKGDLSSLDGEFYDKFDVVVVSCC  132 (324)
Q Consensus       104 v~v~~~~~~~~~~~~~~~~~~diVi~~~~  132 (324)
                      ......    .....+.+++.|+||.+..
T Consensus        64 ~~~~~~----~~~~~~~~~~~dvVVitag   88 (154)
T d5mdha1          64 LKDVIA----TDKEEIAFKDLDVAILVGS   88 (154)
T ss_dssp             EEEEEE----ESCHHHHTTTCSEEEECCS
T ss_pred             cccccc----CcccccccCCceEEEEecc
Confidence            222111    1233567889999998875

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.69  E-value=0.079  Score=45.93  Aligned_cols=106  Identities=16%  Similarity=0.113  Sum_probs=60.5

Q ss_pred             CcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEee
Q 020565           32 SHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEK  110 (324)
Q Consensus        32 ~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~  110 (324)
                      +.|||.|. |-+|+.+++.|...|.. ++.+|.       +.+            +..........+  .++  .++.+.
T Consensus         2 K~ILVTGatGfIG~~lv~~Ll~~g~~-V~~~d~-------~~~------------~~~~~~~~~~~~--~~~--~v~~~~   57 (347)
T d1z45a2           2 KIVLVTGGAGYIGSHTVVELIENGYD-CVVADN-------LSN------------STYDSVARLEVL--TKH--HIPFYE   57 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCE-EEEEEC-------CSS------------CCTHHHHHHHHH--HTS--CCCEEE
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcCe-EEEEEC-------CCC------------cchhHHHhHHhh--ccc--CCeEEE
Confidence            45788886 56999999999999965 777774       111            111111111111  222  334445


Q ss_pred             CCCCCC--chhhc--CCccEEEEcCCC--H-------H--------HHHHHHHHHHhccCCc-cEEEeeecCceE
Q 020565          111 GDLSSL--DGEFY--DKFDVVVVSCCS--V-------T--------TKKLINEKCRKLSKRV-AFYTVDCRDSCG  163 (324)
Q Consensus       111 ~~~~~~--~~~~~--~~~diVi~~~~~--~-------~--------~~~~l~~~~~~~~~~i-p~i~~~~~G~~g  163 (324)
                      .++.+.  ....+  .+.|+||-+...  .       .        ....+-+.|++  .++ .||..++...+|
T Consensus        58 ~Dl~d~~~l~~~~~~~~~d~VihlAa~~~~~~~~~~~~~~~~~N~~~t~~ll~~~~~--~~i~~~i~~SS~~vyg  130 (347)
T d1z45a2          58 VDLCDRKGLEKVFKEYKIDSVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQ--YNVSKFVFSSSATVYG  130 (347)
T ss_dssp             CCTTCHHHHHHHHHHSCCCEEEECCSCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHH--HTCCEEEEEEEGGGGC
T ss_pred             eecCCHHHHHHHHhccCCCEEEEccccccccccccCcccccccchhhhHHHHHHHHh--cccceEEeecceeeec
Confidence            555532  12222  267999865431  1       1        11345567887  665 488888888776

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.63  E-value=0.027  Score=43.81  Aligned_cols=32  Identities=13%  Similarity=0.175  Sum_probs=27.7

Q ss_pred             cCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      ..+|+|+|+|++|..++..+-..|. ++..+|.
T Consensus        28 g~~VlV~GaG~vG~~~~~~ak~~G~-~Vi~~~~   59 (166)
T d1llua2          28 GQWVAISGIGGLGHVAVQYARAMGL-HVAAIDI   59 (166)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCEEEEeeccccHHHHHHHHHHcCC-ccceecc
Confidence            5679999999999999999999995 6777766

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=93.62  E-value=0.03  Score=45.44  Aligned_cols=36  Identities=22%  Similarity=0.267  Sum_probs=32.0

Q ss_pred             HHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565           28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (324)
Q Consensus        28 ~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d   64 (324)
                      .|+.++|+|-|+|.+|..+++.|...|. ++++.|.|
T Consensus        24 ~L~gk~v~IqG~G~VG~~~A~~L~~~Ga-kvvv~d~d   59 (201)
T d1c1da1          24 SLDGLTVLVQGLGAVGGSLASLAAEAGA-QLLVADTD   59 (201)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEecch
Confidence            4888999999999999999999999995 58887764

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=93.62  E-value=0.035  Score=44.23  Aligned_cols=36  Identities=11%  Similarity=0.128  Sum_probs=32.8

Q ss_pred             HHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565           28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (324)
Q Consensus        28 ~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d   64 (324)
                      .|.+++|.|+|.|.+|.++++.|...|. ++..+|..
T Consensus        39 ~l~gk~vgIiG~G~IG~~va~~l~~~g~-~v~~~d~~   74 (181)
T d1qp8a1          39 LIQGEKVAVLGLGEIGTRVGKILAALGA-QVRGFSRT   74 (181)
T ss_dssp             CCTTCEEEEESCSTHHHHHHHHHHHTTC-EEEEECSS
T ss_pred             cccCceEEEeccccccccceeeeecccc-cccccccc
Confidence            4889999999999999999999999999 48888874

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=93.59  E-value=0.16  Score=43.62  Aligned_cols=100  Identities=17%  Similarity=0.129  Sum_probs=61.0

Q ss_pred             cEEEEcCch-hHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEeeC
Q 020565           33 HILVCGMKG-TVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKG  111 (324)
Q Consensus        33 ~VliiG~g~-lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~~  111 (324)
                      ||||.|+.| +|+.+++.|...|--++..+|...-..                             .++...-+++....
T Consensus         2 KILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~~~~-----------------------------~~~~~~~~~~~i~~   52 (342)
T d2blla1           2 RVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAI-----------------------------SRFLNHPHFHFVEG   52 (342)
T ss_dssp             EEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGG-----------------------------GGGTTCTTEEEEEC
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCcch-----------------------------hhhccCCCeEEEEC
Confidence            699999755 999999999999965688877521100                             11111123445555


Q ss_pred             CCCCC---chhhcCCccEEEEcCCC--HH---------------HHHHHHHHHHhccCCccEEEeeecCceE
Q 020565          112 DLSSL---DGEFYDKFDVVVVSCCS--VT---------------TKKLINEKCRKLSKRVAFYTVDCRDSCG  163 (324)
Q Consensus       112 ~~~~~---~~~~~~~~diVi~~~~~--~~---------------~~~~l~~~~~~~~~~ip~i~~~~~G~~g  163 (324)
                      ++...   .+...+++|+||-+...  ..               ....+-+.|.+  .++.++...+...+|
T Consensus        53 Di~~~~~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~--~~~~~~~~ss~~~~~  122 (342)
T d2blla1          53 DISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVK--YRKRIIFPSTSEVYG  122 (342)
T ss_dssp             CTTTCSHHHHHHHHHCSEEEECBCCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHH--TTCEEEEECCGGGGB
T ss_pred             ccCChHHHHHHHHhCCCccccccccccccccccCCcccccccccccccccccccc--ccccccccccccccc
Confidence            55432   23355678888866532  11               12345577888  778777777666666

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=93.55  E-value=0.022  Score=46.99  Aligned_cols=41  Identities=15%  Similarity=0.313  Sum_probs=37.5

Q ss_pred             HHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccc
Q 020565           27 RRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVT   67 (324)
Q Consensus        27 ~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~   67 (324)
                      ++|++.||++.|+|+.|.-+++.|...|.+++.++|.+-+-
T Consensus        22 ~~l~d~riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~GLi   62 (222)
T d1vl6a1          22 KKIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGIL   62 (222)
T ss_dssp             CCTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEEC
T ss_pred             CChhhcEEEEEChHHHHHHHHHHHHHhcccceEeecceeEE
Confidence            57999999999999999999999999999999999985443

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.54  E-value=0.19  Score=43.16  Aligned_cols=32  Identities=19%  Similarity=0.201  Sum_probs=27.6

Q ss_pred             cCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           31 KSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        31 ~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      ++||||.|+ |-+|+++++.|...|. .++.+|.
T Consensus         2 ~kKILITG~tGfIGs~lv~~Ll~~g~-~V~~ld~   34 (346)
T d1ek6a_           2 AEKVLVTGGAGYIGSHTVLELLEAGY-LPVVIDN   34 (346)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHTTC-CEEEEEC
T ss_pred             CCeEEEECCCcHHHHHHHHHHHHCcC-EEEEEEC
Confidence            578999996 5599999999999996 5888886

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.47  E-value=0.12  Score=39.98  Aligned_cols=33  Identities=9%  Similarity=0.034  Sum_probs=28.1

Q ss_pred             hcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        30 ~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      ...+|+|+|+|++|...+..+...|.. +..+|.
T Consensus        27 ~g~~vlI~GaG~vG~~a~q~ak~~G~~-vi~~~~   59 (168)
T d1piwa2          27 PGKKVGIVGLGGIGSMGTLISKAMGAE-TYVISR   59 (168)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCE-EEEEES
T ss_pred             CCCEEEEECCCCcchhHHHHhhhcccc-cccccc
Confidence            357899999999999999998899985 666765

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=93.45  E-value=0.027  Score=43.47  Aligned_cols=32  Identities=19%  Similarity=0.277  Sum_probs=27.3

Q ss_pred             CcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCc
Q 020565           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV   65 (324)
Q Consensus        32 ~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~   65 (324)
                      +||+|||.|.+|.|+|..|.+ |. ++|+++...
T Consensus         1 ~rVvIIGgG~~G~e~A~~l~~-~~-~Vtvv~~~~   32 (167)
T d1xhca1           1 SKVVIVGNGPGGFELAKQLSQ-TY-EVTVIDKEP   32 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT-TS-EEEEECSSS
T ss_pred             CeEEEECCcHHHHHHHHHHHc-CC-CEEEEeccc
Confidence            689999999999999999976 43 799998643

>d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=93.39  E-value=0.11  Score=45.52  Aligned_cols=32  Identities=19%  Similarity=0.311  Sum_probs=28.0

Q ss_pred             cEEEEcCch-hHHHHHHHHHHhCCCcEEEEcCC
Q 020565           33 HILVCGMKG-TVAEFCKNIVLAGVGSLTLMDDR   64 (324)
Q Consensus        33 ~VliiG~g~-lGsei~k~L~~~Gv~~i~lvD~d   64 (324)
                      ||||.|.+| +|+.+++.|+..|...+..+|..
T Consensus         2 kILItG~tGfIGs~l~~~L~~~g~~vv~~~d~~   34 (361)
T d1kewa_           2 KILITGGAGFIGSAVVRHIIKNTQDTVVNIDKL   34 (361)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHHCSCEEEEEECC
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence            799999765 99999999999998877778863

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=93.38  E-value=0.2  Score=39.38  Aligned_cols=79  Identities=16%  Similarity=0.102  Sum_probs=49.9

Q ss_pred             CcEEEEcC-chhHHHHHHHHHHhCC-C-----cEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCC
Q 020565           32 SHILVCGM-KGTVAEFCKNIVLAGV-G-----SLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMV  104 (324)
Q Consensus        32 ~~VliiG~-g~lGsei~k~L~~~Gv-~-----~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v  104 (324)
                      .||.|+|+ |.+|+.++..|+..++ |     .++++|-+                 -   .+.+++..+-.+...-...
T Consensus        25 ~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~-----------------~---~~~~l~g~~mdl~d~a~~~   84 (175)
T d7mdha1          25 VNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSE-----------------R---SFQALEGVAMELEDSLYPL   84 (175)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCG-----------------G---GHHHHHHHHHHHHTTTCTT
T ss_pred             cEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCc-----------------c---ccchhcchhhhhccccccc
Confidence            37999996 9999999999998665 2     34444431                 1   3445566666666554333


Q ss_pred             eEeEeeCCCCCCchhhcCCccEEEEcCCC
Q 020565          105 RVSVEKGDLSSLDGEFYDKFDVVVVSCCS  133 (324)
Q Consensus       105 ~v~~~~~~~~~~~~~~~~~~diVi~~~~~  133 (324)
                      .-....   .....+.+++.|+||.+...
T Consensus        85 ~~~~~~---~~~~~~~~~~aDvVvi~ag~  110 (175)
T d7mdha1          85 LREVSI---GIDPYEVFEDVDWALLIGAK  110 (175)
T ss_dssp             EEEEEE---ESCHHHHTTTCSEEEECCCC
T ss_pred             ccCccc---cccchhhccCCceEEEeecc
Confidence            222211   12345668899999988753

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=93.32  E-value=0.021  Score=44.60  Aligned_cols=32  Identities=16%  Similarity=0.050  Sum_probs=27.0

Q ss_pred             cCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      ..+|+|+|+|++|...+..+...|...+ ++|.
T Consensus        31 G~~VlI~GaG~vG~~a~qlak~~Ga~~i-~~~~   62 (168)
T d1uufa2          31 GKKVGVVGIGGLGHMGIKLAHAMGAHVV-AFTT   62 (168)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEE-EEES
T ss_pred             CCEEEEeccchHHHHHHHHhhcccccch-hhcc
Confidence            4679999999999999999999998765 5655

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.26  E-value=0.091  Score=43.67  Aligned_cols=35  Identities=29%  Similarity=0.371  Sum_probs=31.1

Q ss_pred             HHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        28 ~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      ||+++.++|-|. +|+|.++|+.|+..|.. +.+.|.
T Consensus         3 ~L~gK~alITGas~GIG~aia~~la~~G~~-V~~~~r   38 (244)
T d1nffa_           3 RLTGKVALVSGGARGMGASHVRAMVAEGAK-VVFGDI   38 (244)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEEC
Confidence            688999999996 68999999999999985 888775

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=93.25  E-value=0.084  Score=44.00  Aligned_cols=35  Identities=17%  Similarity=0.250  Sum_probs=31.0

Q ss_pred             HHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        28 ~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      ||+++.++|.|. +|+|.++++.|+..|.. +.+.|.
T Consensus         3 rL~gK~alVTGas~GIG~aia~~la~~Ga~-V~~~~r   38 (251)
T d1zk4a1           3 RLDGKVAIITGGTLGIGLAIATKFVEEGAK-VMITGR   38 (251)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEEC
Confidence            689999999995 78999999999999986 888765

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.25  E-value=0.089  Score=40.06  Aligned_cols=89  Identities=9%  Similarity=0.126  Sum_probs=52.5

Q ss_pred             cCcEEEEcC-chhHHHHHHHHHHhC--CCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEe
Q 020565           31 KSHILVCGM-KGTVAEFCKNIVLAG--VGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS  107 (324)
Q Consensus        31 ~~~VliiG~-g~lGsei~k~L~~~G--v~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~  107 (324)
                      .-+|.|+|+ |-+|.|+++.|...+  .-++..+               .+....   |+.        +....+...+ 
T Consensus         2 ~mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~---------------~s~~~~---Gk~--------i~~~~~~~~~-   54 (144)
T d2hjsa1           2 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLL---------------ASAESA---GQR--------MGFAESSLRV-   54 (144)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEE---------------ECTTTT---TCE--------EEETTEEEEC-
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhcCCCceEEEEE---------------eecccC---Ccc--------eeeccccchh-
Confidence            358999998 679999999998654  3344443               233344   652        1111111111 


Q ss_pred             EeeCCCCCCchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEE
Q 020565          108 VEKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYT  155 (324)
Q Consensus       108 ~~~~~~~~~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~  155 (324)
                            .....+.+++.|+++.|..+.....+...+. +  .+..+|+
T Consensus        55 ------~~~~~~~~~~~d~vf~a~p~~~s~~~~~~~~-~--~g~~VID   93 (144)
T d2hjsa1          55 ------GDVDSFDFSSVGLAFFAAAAEVSRAHAERAR-A--AGCSVID   93 (144)
T ss_dssp             ------EEGGGCCGGGCSEEEECSCHHHHHHHHHHHH-H--TTCEEEE
T ss_pred             ------ccchhhhhccceEEEecCCcchhhhhccccc-c--CCceEEe
Confidence                  1122344678999999987766665555544 4  5666654

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=93.23  E-value=0.033  Score=44.87  Aligned_cols=35  Identities=11%  Similarity=0.159  Sum_probs=31.5

Q ss_pred             HHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565           28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        28 ~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      .|+.++|.|+|+|.+|.++++.|...|+. +..+|+
T Consensus        46 eL~gktvgIiG~G~IG~~va~~l~~fg~~-v~~~d~   80 (193)
T d1mx3a1          46 RIRGETLGIIGLGRVGQAVALRAKAFGFN-VLFYDP   80 (193)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTTCE-EEEECT
T ss_pred             eeeCceEEEeccccccccceeeeeccccc-eeeccC
Confidence            48889999999999999999999999976 777777

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=93.01  E-value=0.033  Score=41.23  Aligned_cols=32  Identities=16%  Similarity=0.079  Sum_probs=29.1

Q ss_pred             cCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      -++++|||.|-+|.|+|..|.+.|. ++|++..
T Consensus        25 p~~~viiG~G~iglE~A~~~~~~G~-~Vtvi~~   56 (123)
T d1dxla2          25 PKKLVVIGAGYIGLEMGSVWGRIGS-EVTVVEF   56 (123)
T ss_dssp             CSEEEESCCSHHHHHHHHHHHHHTC-EEEEECS
T ss_pred             CCeEEEEccchHHHHHHHHHHhcCC-eEEEEEE
Confidence            3689999999999999999999997 4999876

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=93.00  E-value=0.057  Score=41.68  Aligned_cols=33  Identities=12%  Similarity=0.167  Sum_probs=27.8

Q ss_pred             hcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        30 ~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      ...+|+|.|+|++|.-.+..+...|. ++.++|.
T Consensus        27 ~g~~vlv~G~G~iG~~a~~~a~~~g~-~v~~~~~   59 (168)
T d1rjwa2          27 PGEWVAIYGIGGLGHVAVQYAKAMGL-NVVAVDI   59 (168)
T ss_dssp             TTCEEEEECCSTTHHHHHHHHHHTTC-EEEEECS
T ss_pred             CCCEEEEeecccchhhhhHHHhcCCC-eEeccCC
Confidence            46789999999999999999999888 4777665

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=93.00  E-value=0.085  Score=44.14  Aligned_cols=34  Identities=21%  Similarity=0.419  Sum_probs=29.9

Q ss_pred             HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      |++++++|.|. +|+|.++|+.|+..|.. +.++|.
T Consensus         7 l~gK~alITGas~GIG~aia~~la~~Ga~-V~i~~r   41 (260)
T d1h5qa_           7 FVNKTIIVTGGNRGIGLAFTRAVAAAGAN-VAVIYR   41 (260)
T ss_dssp             CTTEEEEEETTTSHHHHHHHHHHHHTTEE-EEEEES
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEEC
Confidence            67889999996 67999999999999985 888876

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=92.91  E-value=0.058  Score=43.04  Aligned_cols=36  Identities=8%  Similarity=-0.021  Sum_probs=32.2

Q ss_pred             HHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565           28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (324)
Q Consensus        28 ~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d   64 (324)
                      .|+.++|.|+|+|.+|.++++.|...|.. +..+|..
T Consensus        41 ~l~~~~vgiiG~G~IG~~va~~l~~fg~~-v~~~d~~   76 (188)
T d1sc6a1          41 EARGKKLGIIGYGHIGTQLGILAESLGMY-VYFYDIE   76 (188)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTCE-EEEECSS
T ss_pred             cccceEEEEeecccchhhhhhhcccccce-Eeecccc
Confidence            48899999999999999999999999887 7888864

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=92.89  E-value=0.086  Score=44.18  Aligned_cols=34  Identities=21%  Similarity=0.220  Sum_probs=30.0

Q ss_pred             HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      |++++++|.|. +|+|.++|+.|+..|.. +.++|.
T Consensus         6 LkgK~alVTGas~GIG~aiA~~la~~Ga~-V~~~~r   40 (259)
T d1xq1a_           6 LKAKTVLVTGGTKGIGHAIVEEFAGFGAV-IHTCAR   40 (259)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEEC
Confidence            68899999996 68999999999999984 888766

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=92.74  E-value=0.16  Score=39.86  Aligned_cols=87  Identities=16%  Similarity=0.057  Sum_probs=49.0

Q ss_pred             hcCcEEEEcCchhHHH-HHHHHHHhC-CCcEE-EEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeE
Q 020565           30 SKSHILVCGMKGTVAE-FCKNIVLAG-VGSLT-LMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRV  106 (324)
Q Consensus        30 ~~~~VliiG~g~lGse-i~k~L~~~G-v~~i~-lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v  106 (324)
                      ++-||.|||+|..|.. .+..+...+ .-+++ ++|.                      ...+++.+++...    ...+
T Consensus         2 kkirigiIG~G~~g~~~h~~~l~~~~~~~~i~~v~d~----------------------~~~~~~~~~~~~~----~~~~   55 (181)
T d1zh8a1           2 RKIRLGIVGCGIAARELHLPALKNLSHLFEITAVTSR----------------------TRSHAEEFAKMVG----NPAV   55 (181)
T ss_dssp             CCEEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECS----------------------SHHHHHHHHHHHS----SCEE
T ss_pred             CCcEEEEEcCCHHHHHHHHHHHHhCCCCeEEEEEEec----------------------cHhhhhhhhcccc----ccce
Confidence            4558999999999987 477776543 22333 4444                      3334444444332    2111


Q ss_pred             eEeeCCCCCCchhhc--CCccEEEEcCCCHHHHHHHHHHHHhccCCcc
Q 020565          107 SVEKGDLSSLDGEFY--DKFDVVVVSCCSVTTKKLINEKCRKLSKRVA  152 (324)
Q Consensus       107 ~~~~~~~~~~~~~~~--~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip  152 (324)
                        + .+    .++++  .+.|+|+.|+.+ .....+...|-+  .+++
T Consensus        56 --~-~~----~~ell~~~~id~v~I~tp~-~~h~~~~~~al~--~gk~   93 (181)
T d1zh8a1          56 --F-DS----YEELLESGLVDAVDLTLPV-ELNLPFIEKALR--KGVH   93 (181)
T ss_dssp             --E-SC----HHHHHHSSCCSEEEECCCG-GGHHHHHHHHHH--TTCE
T ss_pred             --e-ee----eeccccccccceeeccccc-cccccccccccc--cchh
Confidence              1 11    23333  368999988754 455556666666  6664

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.73  E-value=0.32  Score=41.63  Aligned_cols=35  Identities=9%  Similarity=0.083  Sum_probs=28.5

Q ss_pred             HHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        28 ~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      +.+.++|||.|. |-+|+.+++.|...|.. ++.+|.
T Consensus        13 ~~~~k~iLVTG~tGfIGs~lv~~L~~~g~~-V~~~d~   48 (341)
T d1sb8a_          13 PAQPKVWLITGVAGFIGSNLLETLLKLDQK-VVGLDN   48 (341)
T ss_dssp             HHSCCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEEC
T ss_pred             CCCCCEEEEecCCCHHHHHHHHHHHHCcCE-EEEEEC
Confidence            345578999995 66999999999999975 777775

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=92.70  E-value=0.27  Score=34.01  Aligned_cols=88  Identities=13%  Similarity=0.094  Sum_probs=54.3

Q ss_pred             cCcEEEEcCchhHH-HHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEe
Q 020565           31 KSHILVCGMKGTVA-EFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVE  109 (324)
Q Consensus        31 ~~~VliiG~g~lGs-ei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~  109 (324)
                      +.||-+||.||+|. .+|+.|...|.. ++--|..        .+                 ...++|+++.  +++..-
T Consensus         1 ~~~ihfiGIgG~GMs~LA~~L~~~G~~-VsGSD~~--------~~-----------------~~t~~L~~~G--i~i~~g   52 (89)
T d1j6ua1           1 HMKIHFVGIGGIGMSAVALHEFSNGND-VYGSNIE--------ET-----------------ERTAYLRKLG--IPIFVP   52 (89)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCE-EEEECSS--------CC-----------------HHHHHHHHTT--CCEESS
T ss_pred             CcEEEEEeECHHHHHHHHHHHHhCCCe-EEEEeCC--------CC-----------------hhHHHHHHCC--CeEEee
Confidence            35799999999886 779999999984 6665531        11                 1133466665  344221


Q ss_pred             eCCCCCCchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEE
Q 020565          110 KGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYT  155 (324)
Q Consensus       110 ~~~~~~~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~  155 (324)
                            ...+.+++.|+||.+..=++..-. -..+++  .++|+++
T Consensus        53 ------h~~~~i~~~d~vV~SsAI~~~npe-l~~A~~--~gIpv~~   89 (89)
T d1j6ua1          53 ------HSADNWYDPDLVIKTPAVRDDNPE-IVRARM--ERVPIEN   89 (89)
T ss_dssp             ------CCTTSCCCCSEEEECTTCCTTCHH-HHHHHH--TTCCEEE
T ss_pred             ------ecccccCCCCEEEEecCcCCCCHH-HHHHHH--cCCCccC
Confidence                  113335688999988642222112 346778  8999874

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=92.69  E-value=0.1  Score=43.56  Aligned_cols=35  Identities=26%  Similarity=0.417  Sum_probs=30.7

Q ss_pred             HHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        28 ~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      +|++++++|.|. +|+|.++|+.|+..|.. +.+.|.
T Consensus         2 ~L~gK~alVTGas~GIG~aia~~la~~Ga~-V~~~~r   37 (256)
T d1k2wa_           2 RLDGKTALITGSARGIGRAFAEAYVREGAR-VAIADI   37 (256)
T ss_dssp             TTTTEEEEEETCSSHHHHHHHHHHHHTTEE-EEEEES
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEEC
Confidence            478899999996 78999999999999975 888775

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=92.66  E-value=0.067  Score=44.53  Aligned_cols=37  Identities=16%  Similarity=0.321  Sum_probs=32.1

Q ss_pred             HHHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCC
Q 020565           27 RRLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDR   64 (324)
Q Consensus        27 ~~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d   64 (324)
                      +||+++.++|.|. +|+|.++++.|+..|.. +.+.|.+
T Consensus         1 qrL~gKvalVTGas~GIG~aia~~la~~Ga~-V~~~~~~   38 (247)
T d2ew8a1           1 QRLKDKLAVITGGANGIGRAIAERFAVEGAD-IAIADLV   38 (247)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESS
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECC
Confidence            4799999999996 68999999999999985 8887753

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=92.60  E-value=0.26  Score=40.89  Aligned_cols=58  Identities=19%  Similarity=0.294  Sum_probs=40.5

Q ss_pred             CcE-EEEcC-chhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEe
Q 020565           32 SHI-LVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVE  109 (324)
Q Consensus        32 ~~V-liiG~-g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~  109 (324)
                      +|| +|.|. +|+|.++|+.|+..|.. +.+.|.                      .+.+.+.+++.+++...  ++..+
T Consensus         1 KKValITGas~GIG~aia~~la~~Ga~-V~~~~r----------------------~~~~l~~~~~~i~~~g~--~~~~~   55 (255)
T d1gega_           1 KKVALVTGAGQGIGKAIALRLVKDGFA-VAIADY----------------------NDATAKAVASEINQAGG--HAVAV   55 (255)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEES----------------------CHHHHHHHHHHHHHTTC--CEEEE
T ss_pred             CCEEEEcCCccHHHHHHHHHHHHCCCE-EEEEEC----------------------CHHHHHHHHHHHHhcCC--cEEEE
Confidence            355 66686 68999999999999985 888775                      44466677777776654  34444


Q ss_pred             eCCCC
Q 020565          110 KGDLS  114 (324)
Q Consensus       110 ~~~~~  114 (324)
                      ..+++
T Consensus        56 ~~Dv~   60 (255)
T d1gega_          56 KVDVS   60 (255)
T ss_dssp             ECCTT
T ss_pred             EeeCC
Confidence            44554

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=92.58  E-value=0.2  Score=43.39  Aligned_cols=33  Identities=12%  Similarity=0.094  Sum_probs=28.0

Q ss_pred             hcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           30 SKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        30 ~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      ++.||||.|. |=+|+.+++.|...|. .++.+|.
T Consensus        14 ~nMKILVTGgsGfIGs~lv~~L~~~g~-~V~~~d~   47 (363)
T d2c5aa1          14 ENLKISITGAGGFIASHIARRLKHEGH-YVIASDW   47 (363)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcC-EEEEEeC
Confidence            6889999996 5599999999999996 4777775

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=92.55  E-value=0.063  Score=42.01  Aligned_cols=34  Identities=24%  Similarity=0.327  Sum_probs=28.6

Q ss_pred             hcCcEEEEcCchhHHHHHHHHHHhCCC-cEEEEcC
Q 020565           30 SKSHILVCGMKGTVAEFCKNIVLAGVG-SLTLMDD   63 (324)
Q Consensus        30 ~~~~VliiG~g~lGsei~k~L~~~Gv~-~i~lvD~   63 (324)
                      ++++|+|||.|.+|.|+|..|.+.|.. .++++.+
T Consensus         2 m~a~VvIIGgG~~G~e~A~~l~~~g~~v~i~~~~~   36 (183)
T d1d7ya1           2 LKAPVVVLGAGLASVSFVAELRQAGYQGLITVVGD   36 (183)
T ss_dssp             CCSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEES
T ss_pred             CCCCEEEECccHHHHHHHHHHHhcCCceEEEEEec
Confidence            467899999999999999999999976 4655544

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=92.55  E-value=0.079  Score=41.13  Aligned_cols=36  Identities=14%  Similarity=0.261  Sum_probs=29.8

Q ss_pred             hcCcEEEEcCchhHHHHHHHHHHhCCC-cEEEEcCCc
Q 020565           30 SKSHILVCGMKGTVAEFCKNIVLAGVG-SLTLMDDRV   65 (324)
Q Consensus        30 ~~~~VliiG~g~lGsei~k~L~~~Gv~-~i~lvD~d~   65 (324)
                      .+.+|+|||.|.+|.|+|..|.+.|.. +++++++..
T Consensus         2 ~~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~~~   38 (185)
T d1q1ra1           2 ANDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDAT   38 (185)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCC
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHcCCceEEEEecCcc
Confidence            367899999999999999999999986 466666543

>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

Probab=92.51  E-value=0.18  Score=39.17  Aligned_cols=93  Identities=13%  Similarity=0.062  Sum_probs=52.4

Q ss_pred             CcEEEEcC-chhHHHHHHHHHHhCCCcEEEE---cCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEe
Q 020565           32 SHILVCGM-KGTVAEFCKNIVLAGVGSLTLM---DDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS  107 (324)
Q Consensus        32 ~~VliiG~-g~lGsei~k~L~~~Gv~~i~lv---D~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~  107 (324)
                      -||+|+|+ |-+|.++++.+....  .+.|+   |...-  ..+       ..|+   |+-        +..-++.+.+ 
T Consensus         5 ikI~i~Ga~GrMG~~i~~~i~~~~--~~~lv~~~~~~~~--~~~-------g~d~---~~~--------~~~~~~~~~~-   61 (162)
T d1diha1           5 IRVAIAGAGGRMGRQLIQAALALE--GVQLGAALEREGS--SLL-------GSDA---GEL--------AGAGKTGVTV-   61 (162)
T ss_dssp             EEEEETTTTSHHHHHHHHHHHHST--TEECCCEECCTTC--TTC-------SCCT---TCS--------SSSSCCSCCE-
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCC--CCEEEEEEecccc--hhc-------cchh---hhh--------hccccCCcee-
Confidence            37999997 889999999888764  23332   22100  000       1122   210        0000111111 


Q ss_pred             EeeCCCCCCchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEe
Q 020565          108 VEKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTV  156 (324)
Q Consensus       108 ~~~~~~~~~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~  156 (324)
                            ....+..++.+|+||+-+.+ +.....-++|.+  +++|++.+
T Consensus        62 ------~~~~~~~~~~~DViIDFs~p-~~~~~~~~~a~~--~~~~~ViG  101 (162)
T d1diha1          62 ------QSSLDAVKDDFDVFIDFTRP-EGTLNHLAFCRQ--HGKGMVIG  101 (162)
T ss_dssp             ------ESCSTTTTTSCSEEEECSCH-HHHHHHHHHHHH--TTCEEEEC
T ss_pred             ------eccHHHHhcccceEEEeccH-HHHHHHHHHHHh--ccceeEEe
Confidence                  12234566789999988665 444455578888  89999854

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=92.47  E-value=0.042  Score=47.51  Aligned_cols=33  Identities=18%  Similarity=0.301  Sum_probs=30.1

Q ss_pred             hcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        30 ~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      ++++|+|||+|-.|..+|..|+..|. +++|+|.
T Consensus         1 k~KKI~IIGaG~sGL~aA~~L~k~G~-~V~viEk   33 (314)
T d2bi7a1           1 KSKKILIVGAGFSGAVIGRQLAEKGH-QVHIIDQ   33 (314)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHTTTC-EEEEEES
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhCCC-CEEEEEC
Confidence            47899999999999999999999997 5889886

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=92.46  E-value=0.19  Score=37.34  Aligned_cols=34  Identities=21%  Similarity=0.189  Sum_probs=23.5

Q ss_pred             cCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEee
Q 020565          121 YDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVD  157 (324)
Q Consensus       121 ~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~~  157 (324)
                      ++++|+||+-+.+.. ....-++|.+  +++|+|.+.
T Consensus        39 ~~~~DVvIDFS~p~~-~~~~l~~~~~--~~~p~ViGT   72 (128)
T d1vm6a3          39 LDSPDVVIDFSSPEA-LPKTVDLCKK--YRAGLVLGT   72 (128)
T ss_dssp             CSCCSEEEECSCGGG-HHHHHHHHHH--HTCEEEECC
T ss_pred             hccCCEEEEecCHHH-HHHHHHHHHh--cCCCEEEEc
Confidence            457899998776544 4455567777  899987433

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=92.41  E-value=0.12  Score=43.14  Aligned_cols=34  Identities=18%  Similarity=0.219  Sum_probs=29.8

Q ss_pred             HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      |+.+.++|.|. +|+|.++++.|+..|.. +.+.|.
T Consensus         6 L~GK~alITGas~GIG~aia~~la~~Ga~-V~~~~r   40 (259)
T d2ae2a_           6 LEGCTALVTGGSRGIGYGIVEELASLGAS-VYTCSR   40 (259)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEEC
Confidence            67889999997 58999999999999985 888775

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=92.34  E-value=0.052  Score=45.80  Aligned_cols=31  Identities=16%  Similarity=0.245  Sum_probs=28.8

Q ss_pred             CcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        32 ~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      ++|+|||.|..|...|..|+..|. +++|+|.
T Consensus        31 kkV~IIGaG~aGLsaA~~L~~~G~-~V~vlE~   61 (370)
T d2iida1          31 KHVVIVGAGMAGLSAAYVLAGAGH-QVTVLEA   61 (370)
T ss_dssp             CEEEEECCBHHHHHHHHHHHHHTC-EEEEECS
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCC-CEEEEeC
Confidence            489999999999999999999997 5999986

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=92.24  E-value=0.23  Score=41.47  Aligned_cols=63  Identities=13%  Similarity=0.176  Sum_probs=45.2

Q ss_pred             HHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeE
Q 020565           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRV  106 (324)
Q Consensus        28 ~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v  106 (324)
                      .|+++.++|.|. +|+|.++|+.|+..|.. +.+.|.+                     .+.+++.+++.+++..+  ++
T Consensus         4 dL~gK~alITGas~GIG~aia~~la~~G~~-Vv~~~r~---------------------~~~~~~~~~~~~~~~g~--~~   59 (261)
T d1geea_           4 DLEGKVVVITGSSTGLGKSMAIRFATEKAK-VVVNYRS---------------------KEDEANSVLEEIKKVGG--EA   59 (261)
T ss_dssp             GGTTCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEESS---------------------CHHHHHHHHHHHHHTTC--EE
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCC---------------------cHHHHHHHHHHHHhcCC--cE
Confidence            478899999995 78999999999999985 7776641                     23356667777777654  34


Q ss_pred             eEeeCCCC
Q 020565          107 SVEKGDLS  114 (324)
Q Consensus       107 ~~~~~~~~  114 (324)
                      ..+..+++
T Consensus        60 ~~~~~Dvt   67 (261)
T d1geea_          60 IAVKGDVT   67 (261)
T ss_dssp             EEEECCTT
T ss_pred             EEEEccCC
Confidence            44455554

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=92.22  E-value=0.18  Score=43.34  Aligned_cols=30  Identities=20%  Similarity=0.401  Sum_probs=25.7

Q ss_pred             cEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           33 HILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        33 ~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      ||||.|. |-+|+.+++.|...|. +++++|.
T Consensus         2 KiLItG~tGfIG~~l~~~L~~~g~-~V~~~d~   32 (338)
T d1udca_           2 RVLVTGGSGYIGSHTCVQLLQNGH-DVIILDN   32 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC-EEEEEEC
T ss_pred             EEEEECCCCHHHHHHHHHHHHCcC-EEEEEEC
Confidence            6999997 5599999999999996 4888874

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=92.15  E-value=0.3  Score=40.45  Aligned_cols=57  Identities=16%  Similarity=0.236  Sum_probs=40.4

Q ss_pred             cE-EEEcC-chhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEee
Q 020565           33 HI-LVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEK  110 (324)
Q Consensus        33 ~V-liiG~-g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~  110 (324)
                      || +|-|. +|+|.++|+.|+..|.. +.++|.                      .+.+.+.+++.|++...  ++..+.
T Consensus         3 KValITGas~GIG~aia~~la~~Ga~-V~i~~r----------------------~~~~l~~~~~~l~~~g~--~~~~~~   57 (257)
T d2rhca1           3 EVALVTGATSGIGLEIARRLGKEGLR-VFVCAR----------------------GEEGLRTTLKELREAGV--EADGRT   57 (257)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTCE-EEEEES----------------------CHHHHHHHHHHHHHTTC--CEEEEE
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEEC----------------------CHHHHHHHHHHHHhcCC--cEEEEE
Confidence            45 66675 68999999999999985 888776                      44466677777776654  444555


Q ss_pred             CCCC
Q 020565          111 GDLS  114 (324)
Q Consensus       111 ~~~~  114 (324)
                      .+++
T Consensus        58 ~Dvs   61 (257)
T d2rhca1          58 CDVR   61 (257)
T ss_dssp             CCTT
T ss_pred             eecC
Confidence            5554

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.13  E-value=0.14  Score=42.29  Aligned_cols=34  Identities=21%  Similarity=0.316  Sum_probs=30.0

Q ss_pred             HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      |+.++++|.|. +|+|.++++.|+..|.. +.++|.
T Consensus         5 L~GK~~lITGas~GIG~aia~~la~~G~~-V~~~~r   39 (244)
T d1pr9a_           5 LAGRRVLVTGAGKGIGRGTVQALHATGAR-VVAVSR   39 (244)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCCE-EEEEEC
Confidence            67899999996 68999999999999985 888775

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=92.13  E-value=0.088  Score=43.59  Aligned_cols=35  Identities=31%  Similarity=0.355  Sum_probs=30.5

Q ss_pred             HHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        28 ~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      +|+.++++|.|. +|+|.++|+.|+..|.. +.+.+.
T Consensus         2 ~l~gK~alItGas~GIG~aia~~l~~~G~~-V~~~~r   37 (241)
T d2a4ka1           2 RLSGKTILVTGAASGIGRAALDLFAREGAS-LVAVDR   37 (241)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             cCCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEEC
Confidence            588999999997 57999999999999985 777765

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.02  E-value=0.18  Score=42.33  Aligned_cols=77  Identities=19%  Similarity=0.234  Sum_probs=52.7

Q ss_pred             cCcEEEE-c-CchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeE
Q 020565           31 KSHILVC-G-MKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV  108 (324)
Q Consensus        31 ~~~Vlii-G-~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~  108 (324)
                      .+||.|| | .+|+|-++|+.|+..|-.++.+.+.                      ...|.+.+++.|++..+.+.  .
T Consensus         2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r----------------------~~~~~~~~~~~l~~~~~~~~--~   57 (275)
T d1wmaa1           2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTAR----------------------DVTRGQAAVQQLQAEGLSPR--F   57 (275)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEES----------------------SHHHHHHHHHHHHHTTCCCE--E
T ss_pred             CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEEC----------------------CHHHHHHHHHHHHhcCCcEE--E
Confidence            4688665 4 5799999999999985456777655                      55578888888888877654  3


Q ss_pred             eeCCCCCC---------chhhcCCccEEEEcC
Q 020565          109 EKGDLSSL---------DGEFYDKFDVVVVSC  131 (324)
Q Consensus       109 ~~~~~~~~---------~~~~~~~~diVi~~~  131 (324)
                      +..++++.         ..+.+...|++|+..
T Consensus        58 ~~~Dvs~~~sv~~~~~~~~~~~g~iDiLVnNA   89 (275)
T d1wmaa1          58 HQLDIDDLQSIRALRDFLRKEYGGLDVLVNNA   89 (275)
T ss_dssp             EECCTTCHHHHHHHHHHHHHHHSSEEEEEECC
T ss_pred             EEEecCCHHHHHHHHHHHHHhcCCcEEEEEcC
Confidence            44555431         112235678888654

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=91.95  E-value=0.17  Score=44.51  Aligned_cols=123  Identities=13%  Similarity=0.093  Sum_probs=67.4

Q ss_pred             CcEEEEcCch-hHHHHHHHHHHhCCCcEEEEcCCcccc--ccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeE
Q 020565           32 SHILVCGMKG-TVAEFCKNIVLAGVGSLTLMDDRVVTE--EAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV  108 (324)
Q Consensus        32 ~~VliiG~g~-lGsei~k~L~~~Gv~~i~lvD~d~v~~--~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~  108 (324)
                      +||||.|..| +|+++++.|...|. .++.+|+-.-..  .+.+..-+..       .....+.+...-...++.  ++.
T Consensus         2 ~kILVTGatGfiG~~lv~~Ll~~g~-~V~~iDnl~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~--i~~   71 (393)
T d1i24a_           2 SRVMVIGGDGYCGWATALHLSKKNY-EVCIVDNLVRRLFDHQLGLESLTP-------IASIHDRISRWKALTGKS--IEL   71 (393)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCHHHHHHHHHTCCCSSC-------CCCHHHHHHHHHHHHCCC--CEE
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcC-EEEEEecCCccccccccccccccc-------ccchHHHHHHHHhhcCCC--cEE
Confidence            6899999755 99999999999996 488888521111  0111111111       112233333222333443  455


Q ss_pred             eeCCCCCC--chhhcC--CccEEEEcCC---------CHH-----------HHHHHHHHHHhccCCccEEEeeecCceEE
Q 020565          109 EKGDLSSL--DGEFYD--KFDVVVVSCC---------SVT-----------TKKLINEKCRKLSKRVAFYTVDCRDSCGE  164 (324)
Q Consensus       109 ~~~~~~~~--~~~~~~--~~diVi~~~~---------~~~-----------~~~~l~~~~~~~~~~ip~i~~~~~G~~g~  164 (324)
                      +..++.+.  ....++  ++|+|+-...         +..           ....+-+.|++.+....++.+.+...+|.
T Consensus        72 ~~~Dl~d~~~l~~~~~~~~~d~ViHlAa~~~~~~s~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~~i~~ss~~~~~~  151 (393)
T d1i24a_          72 YVGDICDFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGEECHLVKLGTMGEYGT  151 (393)
T ss_dssp             EESCTTSHHHHHHHHHHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEECCGGGGCC
T ss_pred             EEccCCCHHHHHHHHHhhcchheeccccccccccccccccccccccccccccccHHHHHHHHhccccceeeccccccccc
Confidence            55566542  233443  4689986542         111           11234467877445566888887776664

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=91.88  E-value=0.048  Score=43.37  Aligned_cols=42  Identities=19%  Similarity=0.156  Sum_probs=35.2

Q ss_pred             HhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccC
Q 020565           29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAW   71 (324)
Q Consensus        29 l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl   71 (324)
                      +.-++|+|+|+|-+|...+....+.|.. ++++|.+.-..+.+
T Consensus        27 V~pa~VvViGaGvaG~~Aa~~A~~lGA~-V~v~D~~~~~~~~l   68 (183)
T d1l7da1          27 VPPARVLVFGVGVAGLQAIATAKRLGAV-VMATDVRAATKEQV   68 (183)
T ss_dssp             ECCCEEEEECCSHHHHHHHHHHHHTTCE-EEEECSCSTTHHHH
T ss_pred             cCCcEEEEEcCcHHHHHHHHHHHHcCCE-EEEEeccHHHHHHH
Confidence            4678999999999999999999999985 99999865544443

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=91.88  E-value=0.16  Score=42.41  Aligned_cols=34  Identities=18%  Similarity=0.206  Sum_probs=28.6

Q ss_pred             HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      |+++.++|.|. +|+|.++|+.|+..|.. +.+.|.
T Consensus         2 L~gK~alITGas~GIG~aiA~~la~~Ga~-V~~~~r   36 (260)
T d1x1ta1           2 LKGKVAVVTGSTSGIGLGIATALAAQGAD-IVLNGF   36 (260)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCE-EEEECC
T ss_pred             CCcCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEeC
Confidence            56778888885 68999999999999985 888775

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.83  E-value=0.1  Score=44.78  Aligned_cols=35  Identities=20%  Similarity=0.244  Sum_probs=30.3

Q ss_pred             HHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        28 ~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      +|+++.++|-|+ +|+|.++|+.|+..|.. +.+.|.
T Consensus         4 ~l~gKvalITGas~GIG~aiA~~la~~Ga~-Vvi~d~   39 (302)
T d1gz6a_           4 RFDGRVVLVTGAGGGLGRAYALAFAERGAL-VVVNDL   39 (302)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEECC
T ss_pred             CcCCCEEEEeCCCCHHHHHHHHHHHHcCCE-EEEEeC
Confidence            467889999996 68999999999999985 888775

>d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptomyces venezuelae [TaxId: 54571]

Probab=91.61  E-value=0.37  Score=40.85  Aligned_cols=106  Identities=15%  Similarity=0.194  Sum_probs=63.1

Q ss_pred             cEEEEcC-chhHHHHHHHHHHhCC-----CcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeE
Q 020565           33 HILVCGM-KGTVAEFCKNIVLAGV-----GSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRV  106 (324)
Q Consensus        33 ~VliiG~-g~lGsei~k~L~~~Gv-----~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v  106 (324)
                      ||+|.|. |-+|+.+++.|...|.     .++..+|.-......                        ..+........+
T Consensus         2 kIlItG~tGfIG~~l~~~L~~~g~~v~~~~~i~~~d~~~~~~~~------------------------~~~~~~~~~~~~   57 (322)
T d1r6da_           2 RLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNR------------------------ANLAPVDADPRL   57 (322)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCCG------------------------GGGGGGTTCTTE
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCCccCCceEEEEeCCCccccH------------------------hHhhhhhcCCCe
Confidence            6999996 5699999999999874     345666653222110                        012222233455


Q ss_pred             eEeeCCCCC--CchhhcCCccEEEEcCCC-----------------HHHHHHHHHHHHhccCCc-cEEEeeecCceEE
Q 020565          107 SVEKGDLSS--LDGEFYDKFDVVVVSCCS-----------------VTTKKLINEKCRKLSKRV-AFYTVDCRDSCGE  164 (324)
Q Consensus       107 ~~~~~~~~~--~~~~~~~~~diVi~~~~~-----------------~~~~~~l~~~~~~~~~~i-p~i~~~~~G~~g~  164 (324)
                      +.+..+...  .........|+|+.+...                 ......+-+.|++  .++ .||.+++...+|.
T Consensus        58 ~~~~~d~~~~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~--~~~~~~I~~Ss~~~yg~  133 (322)
T d1r6da_          58 RFVHGDIRDAGLLARELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVD--AGVGRVVHVSTNQVYGS  133 (322)
T ss_dssp             EEEECCTTCHHHHHHHTTTCCEEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHH--TTCCEEEEEEEGGGGCC
T ss_pred             EEEEeccccchhhhccccccceEEeecccccccccccchHHHhhhhHHHHHHHHHHHHH--cCCceEEEeecceeecC
Confidence            555555543  234455778888765421                 1111345567877  665 4899998888873

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=91.49  E-value=0.19  Score=41.73  Aligned_cols=37  Identities=27%  Similarity=0.285  Sum_probs=31.8

Q ss_pred             HHHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCC
Q 020565           27 RRLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDR   64 (324)
Q Consensus        27 ~~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d   64 (324)
                      +||+++.++|.|. +|+|.++++.|+..|.. +.+.|.+
T Consensus         2 nrL~gK~alITGas~GIG~aia~~la~~Ga~-V~~~~~~   39 (253)
T d1hxha_           2 NRLQGKVALVTGGASGVGLEVVKLLLGEGAK-VAFSDIN   39 (253)
T ss_dssp             CTTTTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEECSC
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECC
Confidence            3689999999995 68999999999999986 8887753

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.36  E-value=0.33  Score=41.40  Aligned_cols=76  Identities=17%  Similarity=0.170  Sum_probs=49.8

Q ss_pred             HhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeE
Q 020565           29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV  108 (324)
Q Consensus        29 l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~  108 (324)
                      +++++||-|||| .|. ++..++++|..+++-+|.                      .. .+..+++..++.+-.-++..
T Consensus        34 ~~~~~VLDiGcG-~G~-lsl~aa~~Ga~~V~aid~----------------------s~-~~~~a~~~~~~~~~~~~i~~   88 (311)
T d2fyta1          34 FKDKVVLDVGCG-TGI-LSMFAAKAGAKKVLGVDQ----------------------SE-ILYQAMDIIRLNKLEDTITL   88 (311)
T ss_dssp             TTTCEEEEETCT-TSH-HHHHHHHTTCSEEEEEES----------------------ST-HHHHHHHHHHHTTCTTTEEE
T ss_pred             CCcCEEEEECCC-CCH-HHHHHHHcCCCEEEEEeC----------------------HH-HHHHHHHHHHHhCCCccceE
Confidence            577899999998 453 667888999998988876                      22 23334455555554556666


Q ss_pred             eeCCCCCCchhhcCCccEEEEc
Q 020565          109 EKGDLSSLDGEFYDKFDVVVVS  130 (324)
Q Consensus       109 ~~~~~~~~~~~~~~~~diVi~~  130 (324)
                      ...+..+... -...+|+|+..
T Consensus        89 ~~~~~~~l~~-~~~~~D~Ivse  109 (311)
T d2fyta1          89 IKGKIEEVHL-PVEKVDVIISE  109 (311)
T ss_dssp             EESCTTTSCC-SCSCEEEEEEC
T ss_pred             EEeeHHHhcC-ccccceEEEEe
Confidence            6666554321 13579999863

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=91.32  E-value=0.08  Score=45.71  Aligned_cols=33  Identities=18%  Similarity=0.195  Sum_probs=29.4

Q ss_pred             CcEEEEcCchhHHHHHHHHHHhCCC-cEEEEcCC
Q 020565           32 SHILVCGMKGTVAEFCKNIVLAGVG-SLTLMDDR   64 (324)
Q Consensus        32 ~~VliiG~g~lGsei~k~L~~~Gv~-~i~lvD~d   64 (324)
                      +||+|||+|..|..+|++|.+.|.+ ++++++..
T Consensus         5 KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~   38 (335)
T d2gv8a1           5 RKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERR   38 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSS
T ss_pred             CeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECC
Confidence            5799999999999999999998874 69998875

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.19  E-value=0.36  Score=40.22  Aligned_cols=35  Identities=20%  Similarity=0.332  Sum_probs=30.5

Q ss_pred             HHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        28 ~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      .|++++++|.|+ +|+|.++|+.|+..|.. +.+++.
T Consensus        11 ~L~GK~alITGassGIG~aiA~~la~~G~~-Vil~~r   46 (269)
T d1xu9a_          11 MLQGKKVIVTGASKGIGREMAYHLAKMGAH-VVVTAR   46 (269)
T ss_dssp             GGTTCEEEESSCSSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             ccCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEEC
Confidence            388999999997 58999999999999975 888765

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=91.15  E-value=0.14  Score=40.77  Aligned_cols=30  Identities=17%  Similarity=0.097  Sum_probs=24.9

Q ss_pred             CcEEEEcC-chhHHHHHHHHHHhCCCcEEEEc
Q 020565           32 SHILVCGM-KGTVAEFCKNIVLAGVGSLTLMD   62 (324)
Q Consensus        32 ~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD   62 (324)
                      ++|||.|. |.+|+.+++.|+..|.. ++++|
T Consensus         4 ~tVlVtGatG~iG~~l~~~Ll~~g~~-v~v~~   34 (252)
T d2q46a1           4 PTVLVTGASGRTGQIVYKKLKEGSDK-FVAKG   34 (252)
T ss_dssp             CEEEEESTTSTTHHHHHHHHHHTTTT-CEEEE
T ss_pred             CEEEEECCccHHHHHHHHHHHHCCCc-EEEEE
Confidence            68999995 88999999999999964 45544

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=91.15  E-value=0.8  Score=37.45  Aligned_cols=33  Identities=24%  Similarity=0.169  Sum_probs=28.2

Q ss_pred             hcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           30 SKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        30 ~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      .++||||.|+ |-+|+.+++.|...|. +++.++.
T Consensus         2 ~kkKILVtGatG~iG~~l~~~L~~~G~-~V~~l~R   35 (307)
T d1qyca_           2 SRSRILLIGATGYIGRHVAKASLDLGH-PTFLLVR   35 (307)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTTC-CEEEECC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-eEEEEEC
Confidence            4689999997 7799999999999997 4777665

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=91.12  E-value=0.12  Score=41.61  Aligned_cols=35  Identities=11%  Similarity=0.078  Sum_probs=31.0

Q ss_pred             hcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCc
Q 020565           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV   65 (324)
Q Consensus        30 ~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~   65 (324)
                      .+..|+|||.|+.|.+.|..+++.|.+ ++|+|.+.
T Consensus         4 ~~~DlvVIG~GpaGl~aA~~aa~~G~~-V~liE~~~   38 (220)
T d1lvla1           4 IQTTLLIIGGGPGGYVAAIRAGQLGIP-TVLVEGQA   38 (220)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHTCC-EEEECSSC
T ss_pred             cccCEEEECCCHHHHHHHHHHHHCCCc-EEEEecCC
Confidence            457899999999999999999999975 99998754

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=90.95  E-value=0.13  Score=40.59  Aligned_cols=34  Identities=9%  Similarity=0.086  Sum_probs=29.7

Q ss_pred             cCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCc
Q 020565           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV   65 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~   65 (324)
                      +.+|+|||.|..|.+.|..|++.|.. .+++|...
T Consensus         5 ~~~VvIIGgGpaGl~aA~~~ar~g~~-v~vie~~~   38 (192)
T d1vdca1           5 NTRLCIVGSGPAAHTAAIYAARAELK-PLLFEGWM   38 (192)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCC-CEEECCSS
T ss_pred             cceEEEECCCHHHHHHHHHHHHcCCc-EEEEEeec
Confidence            57899999999999999999999986 67777544

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.88  E-value=0.1  Score=43.62  Aligned_cols=33  Identities=12%  Similarity=0.280  Sum_probs=29.7

Q ss_pred             hcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        30 ~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      +..||+|||+|--|-..|..|+.+|. +++|++.
T Consensus         4 ~~~kViVIGaG~aGL~aA~~L~~~G~-~V~VlEa   36 (449)
T d2dw4a2           4 KTGKVIIIGSGVSGLAAARQLQSFGM-DVTLLEA   36 (449)
T ss_dssp             CCCEEEEECCBHHHHHHHHHHHHTTC-EEEEECS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCC-CEEEEeC
Confidence            46789999999999999999999998 4888876

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=90.84  E-value=0.091  Score=43.27  Aligned_cols=30  Identities=13%  Similarity=0.191  Sum_probs=28.1

Q ss_pred             cEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565           33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        33 ~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      +|+|||.|..|...|..|++.|.. ++|++.
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~~-V~vlE~   31 (347)
T d2ivda1           2 NVAVVGGGISGLAVAHHLRSRGTD-AVLLES   31 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHTTTCC-EEEECS
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCC-EEEEec
Confidence            699999999999999999999985 999986

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=90.82  E-value=0.12  Score=41.33  Aligned_cols=34  Identities=18%  Similarity=0.120  Sum_probs=30.3

Q ss_pred             hcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        30 ~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      ...+|+|+|+|++|.-.+..+...|.+++.++|.
T Consensus        25 ~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~   58 (195)
T d1kola2          25 PGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDL   58 (195)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEES
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhhcccceeeecc
Confidence            3557999999999999999988999999999987

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=90.75  E-value=0.31  Score=41.18  Aligned_cols=31  Identities=19%  Similarity=0.400  Sum_probs=26.1

Q ss_pred             CcEEEEcCch-hHHHHHHHHHHhCCCcEEEEcC
Q 020565           32 SHILVCGMKG-TVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        32 ~~VliiG~g~-lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      +||||.|+.| +|+.+++.|...|.. ++.+|.
T Consensus         1 ~KILVTGatGfIGs~lv~~Ll~~g~~-V~~id~   32 (338)
T d1orra_           1 AKLLITGGCGFLGSNLASFALSQGID-LIVFDN   32 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCE-EEEEEC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcCE-EEEEEC
Confidence            5899999755 999999999999974 777773

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=90.75  E-value=0.11  Score=43.23  Aligned_cols=31  Identities=19%  Similarity=0.163  Sum_probs=28.4

Q ss_pred             EEEEcCchhHHHHHHHHHHhCCCcEEEEcCCc
Q 020565           34 ILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV   65 (324)
Q Consensus        34 VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~   65 (324)
                      |+|||.|-.|+.+|..|++.|.+ ++|+|...
T Consensus         6 vvIIGaGi~Gls~A~~La~~G~~-V~viE~~~   36 (281)
T d2gf3a1           6 VIVVGAGSMGMAAGYQLAKQGVK-TLLVDAFD   36 (281)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCC-EEEECSSC
T ss_pred             EEEECcCHHHHHHHHHHHHCCCc-EEEEeCCC
Confidence            99999999999999999999975 99998754

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=90.63  E-value=0.084  Score=42.66  Aligned_cols=32  Identities=16%  Similarity=0.053  Sum_probs=27.4

Q ss_pred             cEEEEcCchhHHHHHHHHHHhCCC-----cEEEEcCC
Q 020565           33 HILVCGMKGTVAEFCKNIVLAGVG-----SLTLMDDR   64 (324)
Q Consensus        33 ~VliiG~g~lGsei~k~L~~~Gv~-----~i~lvD~d   64 (324)
                      ||+|||+|-+|..+|..|+..|..     +.++++.+
T Consensus         2 kV~VIGaGi~GlstA~~L~~~G~~v~v~e~~~i~~~~   38 (246)
T d1kifa1           2 RVVVIGAGVIGLSTALCIHERYHSVLQPLDVKVYADR   38 (246)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESC
T ss_pred             EEEEECchHHHHHHHHHHHHCCCCceEEeeeeecccC
Confidence            699999999999999999999975     45666554

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=90.59  E-value=0.23  Score=38.51  Aligned_cols=24  Identities=13%  Similarity=0.084  Sum_probs=20.6

Q ss_pred             hcCcEEEEcCchhHHHHHHHHHHh
Q 020565           30 SKSHILVCGMKGTVAEFCKNIVLA   53 (324)
Q Consensus        30 ~~~~VliiG~g~lGsei~k~L~~~   53 (324)
                      ++-||.|+|+|.+|...++.|...
T Consensus         2 ~kirvgiiG~G~ig~~~~~~l~~~   25 (170)
T d1f06a1           2 TNIRVAIVGYGNLGRSVEKLIAKQ   25 (170)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHTTC
T ss_pred             CcceEEEECChHHHHHHHHHHHhC
Confidence            455899999999999999998763

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=90.52  E-value=0.82  Score=34.02  Aligned_cols=22  Identities=18%  Similarity=0.190  Sum_probs=18.5

Q ss_pred             cEEEEcC-chhHHHHHHHHHHhC
Q 020565           33 HILVCGM-KGTVAEFCKNIVLAG   54 (324)
Q Consensus        33 ~VliiG~-g~lGsei~k~L~~~G   54 (324)
                      ||.|+|+ |-.|.++++.+....
T Consensus         1 kI~v~Ga~GrMG~~i~~~i~~~~   23 (135)
T d1yl7a1           1 RVGVLGAKGKVGATMVRAVAAAD   23 (135)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHST
T ss_pred             CEEEECCCCHHHHHHHHHHHhCC
Confidence            6999996 889999999877653

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=90.47  E-value=0.055  Score=41.26  Aligned_cols=20  Identities=10%  Similarity=-0.009  Sum_probs=16.3

Q ss_pred             EEEEcCchhHHHHHHHHHHh
Q 020565           34 ILVCGMKGTVAEFCKNIVLA   53 (324)
Q Consensus        34 VliiG~g~lGsei~k~L~~~   53 (324)
                      |-+||+|-+|..++++|...
T Consensus         2 IgfIG~G~mg~~l~~~L~~~   21 (153)
T d2i76a2           2 LNFVGTGTLTRFFLECLKDR   21 (153)
T ss_dssp             CEEESCCHHHHHHHHTTC--
T ss_pred             EEEEeCcHHHHHHHHHHHhC
Confidence            46899999999999998653

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.43  E-value=0.21  Score=41.43  Aligned_cols=64  Identities=14%  Similarity=0.251  Sum_probs=48.7

Q ss_pred             HhcCcEEEEcC-chhHHHHHHHHHH---hCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCC
Q 020565           29 LSKSHILVCGM-KGTVAEFCKNIVL---AGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMV  104 (324)
Q Consensus        29 l~~~~VliiG~-g~lGsei~k~L~~---~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v  104 (324)
                      |+.+.++|-|. +|+|.++|+.|++   .|. ++.++|.                      ...+.+.+++.|+..+|..
T Consensus         4 L~gKvalITGas~GIG~aiA~~lA~~~~~G~-~Vv~~~r----------------------~~~~l~~~~~~l~~~~~~~   60 (259)
T d1oaaa_           4 LGCAVCVLTGASRGFGRALAPQLARLLSPGS-VMLVSAR----------------------SESMLRQLKEELGAQQPDL   60 (259)
T ss_dssp             CBSEEEEESSCSSHHHHHHHHHHHTTBCTTC-EEEEEES----------------------CHHHHHHHHHHHHHHCTTS
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHhcccCCC-EEEEEEC----------------------CHHHHHHHHHHHHhhcCCc
Confidence            44555556586 6899999999997   454 4777655                      4557788889999999999


Q ss_pred             eEeEeeCCCCC
Q 020565          105 RVSVEKGDLSS  115 (324)
Q Consensus       105 ~v~~~~~~~~~  115 (324)
                      ++..+..++++
T Consensus        61 ~~~~~~~Dvs~   71 (259)
T d1oaaa_          61 KVVLAAADLGT   71 (259)
T ss_dssp             EEEEEECCTTS
T ss_pred             eEEEEEccCCC
Confidence            98888877764

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=90.15  E-value=0.32  Score=40.00  Aligned_cols=34  Identities=15%  Similarity=0.214  Sum_probs=28.9

Q ss_pred             HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      |+++.++|-|. +|+|.++++.|+..|.. +.+.|.
T Consensus         2 l~gK~alITGas~GIG~a~a~~l~~~G~~-Vv~~~r   36 (243)
T d1q7ba_           2 FEGKIALVTGASRGIGRAIAETLAARGAK-VIGTAT   36 (243)
T ss_dssp             CTTCEEEESSCSSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCCE-EEEEeC
Confidence            57788888895 68999999999999985 777765

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.10  E-value=0.14  Score=40.73  Aligned_cols=32  Identities=16%  Similarity=0.191  Sum_probs=28.6

Q ss_pred             cCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      +.-|+|||.|-.|..+|..|++.|. +++|+|.
T Consensus         5 ~yDviViGaG~~Gl~~A~~La~~G~-~V~vlE~   36 (297)
T d2bcgg1           5 DYDVIVLGTGITECILSGLLSVDGK-KVLHIDK   36 (297)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHTTC-CEEEECS
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCC-CEEEEcC
Confidence            3458999999999999999999997 4999887

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=89.92  E-value=0.16  Score=39.00  Aligned_cols=32  Identities=16%  Similarity=0.282  Sum_probs=29.5

Q ss_pred             hcCcEEEEcCchhHHHHHHHHHHhCCCcEEEE
Q 020565           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLM   61 (324)
Q Consensus        30 ~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lv   61 (324)
                      ...+|+|||.|-+|.+.|..+.+.|..+++++
T Consensus        44 ~~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi   75 (153)
T d1gtea3          44 IRGAVIVLGAGDTAFDCATSALRCGARRVFLV   75 (153)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHTTCSEEEEE
T ss_pred             CCCEEEEECCChhHHHHHHHHHHcCCcceeEE
Confidence            34689999999999999999999999999987

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=89.91  E-value=0.14  Score=40.40  Aligned_cols=32  Identities=9%  Similarity=0.114  Sum_probs=28.4

Q ss_pred             cEEEEcCchhHHHHHHHHHHhCCC-cEEEEcCC
Q 020565           33 HILVCGMKGTVAEFCKNIVLAGVG-SLTLMDDR   64 (324)
Q Consensus        33 ~VliiG~g~lGsei~k~L~~~Gv~-~i~lvD~d   64 (324)
                      ||+|||.|.+|.|+|..|.+.+-+ ++++++.+
T Consensus         2 KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~   34 (198)
T d1nhpa1           2 KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKG   34 (198)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCTTSEEEEEESS
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCC
Confidence            799999999999999999998775 68998763

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=89.87  E-value=0.16  Score=41.34  Aligned_cols=34  Identities=15%  Similarity=0.121  Sum_probs=29.8

Q ss_pred             cCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCc
Q 020565           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV   65 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~   65 (324)
                      +.-|+|||+|..|...|..|++.|.+ ++|+|...
T Consensus         2 ~yDViIIGaG~aGl~aA~~la~~G~~-V~liEk~~   35 (251)
T d2i0za1           2 HYDVIVIGGGPSGLMAAIGAAEEGAN-VLLLDKGN   35 (251)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCC-EEEECSSS
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCc-EEEEeCCC
Confidence            34699999999999999999999985 99998743

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=89.72  E-value=0.22  Score=38.83  Aligned_cols=34  Identities=18%  Similarity=0.173  Sum_probs=31.0

Q ss_pred             HhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565           29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        29 l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      .+.++|+|+|+|-+|...+....+.|.. ++++|.
T Consensus        30 v~pa~V~ViGaGvaG~~A~~~A~~lGA~-V~~~D~   63 (168)
T d1pjca1          30 VKPGKVVILGGGVVGTEAAKMAVGLGAQ-VQIFDI   63 (168)
T ss_dssp             BCCCEEEEECCSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             CCCcEEEEECCChHHHHHHHHHhhCCCE-EEEEeC
Confidence            4689999999999999999999999965 999886

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=89.66  E-value=0.52  Score=37.23  Aligned_cols=25  Identities=16%  Similarity=0.174  Sum_probs=22.4

Q ss_pred             cCcEEEEcC-chhHHHHHHHHHHhCC
Q 020565           31 KSHILVCGM-KGTVAEFCKNIVLAGV   55 (324)
Q Consensus        31 ~~~VliiG~-g~lGsei~k~L~~~Gv   55 (324)
                      .+||+|.|. |-+|.++++.|...|-
T Consensus         2 ~KkIlItGatG~iG~~lv~~L~~~~~   27 (212)
T d2a35a1           2 PKRVLLAGATGLTGEHLLDRILSEPT   27 (212)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHCTT
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCC
Confidence            479999998 7799999999999885

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=89.52  E-value=0.28  Score=41.00  Aligned_cols=35  Identities=20%  Similarity=0.220  Sum_probs=30.2

Q ss_pred             HHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        28 ~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      .|++++++|.|+ +|+|.++++.|+..|.. +.+.|.
T Consensus        15 sL~gK~~lITGas~GIG~aia~~la~~Ga~-Vvi~~~   50 (272)
T d1g0oa_          15 SLEGKVALVTGAGRGIGREMAMELGRRGCK-VIVNYA   50 (272)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCE-EEEEeC
Confidence            488899999995 78999999999999986 667664

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=89.52  E-value=0.17  Score=41.68  Aligned_cols=33  Identities=15%  Similarity=0.189  Sum_probs=29.6

Q ss_pred             cCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d   64 (324)
                      ...|+|||+|..|...|..|++.|.. ++|+|..
T Consensus         4 ~~DViIIGaG~aGl~aA~~la~~G~~-V~vlEk~   36 (253)
T d2gqfa1           4 YSENIIIGAGAAGLFCAAQLAKLGKS-VTVFDNG   36 (253)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCC-EEEECSS
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCc-EEEEecC
Confidence            45699999999999999999999975 8999875

>d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Ornithine cyclodeaminase
species: Pseudomonas putida [TaxId: 303]

Probab=89.35  E-value=0.71  Score=40.00  Aligned_cols=75  Identities=11%  Similarity=0.081  Sum_probs=55.4

Q ss_pred             cCcEEEEcCchhHHHHHHHH-HHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEe
Q 020565           31 KSHILVCGMKGTVAEFCKNI-VLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVE  109 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L-~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~  109 (324)
                      ..++.|||+|.-+-.-++.+ ...++.++.++|.                      ...+++..++++++ .+.+.+...
T Consensus       128 a~~l~iiG~G~QA~~~~~a~~~v~~i~~V~v~~r----------------------~~~~~~~~~~~l~~-~~g~~v~~~  184 (340)
T d1x7da_         128 ARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDT----------------------DPLATAKLIANLKE-YSGLTIRRA  184 (340)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECS----------------------SHHHHHHHHHHHTT-CTTCEEEEC
T ss_pred             CceEEEEcccHHHHHHHHHHhhhcceeeeEEEec----------------------ChHHHHHHHHhhhh-ccCCCceec
Confidence            46799999999988777755 5677899988766                      45577777777765 445666543


Q ss_pred             eCCCCCCchhhcCCccEEEEcCCC
Q 020565          110 KGDLSSLDGEFYDKFDVVVVSCCS  133 (324)
Q Consensus       110 ~~~~~~~~~~~~~~~diVi~~~~~  133 (324)
                           +..++.++++|+|+.|+.+
T Consensus       185 -----~s~~eav~~ADIi~t~Tas  203 (340)
T d1x7da_         185 -----SSVAEAVKGVDIITTVTAD  203 (340)
T ss_dssp             -----SSHHHHHTTCSEEEECCCC
T ss_pred             -----CCHHHHHhcCCceeecccc
Confidence                 2346778899999988865

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=89.33  E-value=0.67  Score=37.47  Aligned_cols=87  Identities=16%  Similarity=0.184  Sum_probs=55.4

Q ss_pred             cCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEee
Q 020565           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEK  110 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~  110 (324)
                      .++||=+|||. |. .+..|+..|. +++-+|.                      -+.=.+.+++++.+.++.++  ...
T Consensus        42 ~~~iLDiGcGt-G~-~~~~l~~~~~-~v~gvD~----------------------s~~mi~~a~~~~~~~~~~i~--~~~   94 (251)
T d1wzna1          42 VRRVLDLACGT-GI-PTLELAERGY-EVVGLDL----------------------HEEMLRVARRKAKERNLKIE--FLQ   94 (251)
T ss_dssp             CCEEEEETCTT-CH-HHHHHHHTTC-EEEEEES----------------------CHHHHHHHHHHHHHTTCCCE--EEE
T ss_pred             CCEEEEeCCCC-Cc-cchhhcccce-EEEEEee----------------------ccccccccccccccccccch--hee
Confidence            34699999984 64 4667889997 6888877                      33345677778888777554  444


Q ss_pred             CCCCCCchhhcCCccEEEEcCCC------HHHHHHHHHHHHh
Q 020565          111 GDLSSLDGEFYDKFDVVVVSCCS------VTTKKLINEKCRK  146 (324)
Q Consensus       111 ~~~~~~~~~~~~~~diVi~~~~~------~~~~~~l~~~~~~  146 (324)
                      .+..+..  +-+.||+|++....      .+....+.++.+.
T Consensus        95 ~d~~~l~--~~~~fD~I~~~~~~~~~~~~~~~~~~L~~~~~~  134 (251)
T d1wzna1          95 GDVLEIA--FKNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEA  134 (251)
T ss_dssp             SCGGGCC--CCSCEEEEEECSSGGGGSCHHHHHHHHHHHHHH
T ss_pred             hhhhhcc--cccccchHhhhhhhhhcCChHHHHHHHHHHHHH
Confidence            4444332  22579999886432      2234556666655

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=89.32  E-value=0.14  Score=43.56  Aligned_cols=30  Identities=7%  Similarity=0.072  Sum_probs=27.6

Q ss_pred             cEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565           33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        33 ~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      .|+|||+|-.|+.+|..|+..|. +++|+|.
T Consensus         3 dv~IIGaG~sGl~~A~~L~~~g~-~V~iiEk   32 (298)
T d1i8ta1           3 DYIIVGSGLFGAVCANELKKLNK-KVLVIEK   32 (298)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGTC-CEEEECS
T ss_pred             cEEEECCcHHHHHHHHHHHhCCC-cEEEEEC
Confidence            58999999999999999999996 5999987

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=89.30  E-value=0.15  Score=41.90  Aligned_cols=35  Identities=23%  Similarity=0.380  Sum_probs=30.4

Q ss_pred             HHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565           28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        28 ~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      .|+.++|+|-|.|.+|+.+++.|...|.. ++.+|.
T Consensus        36 ~l~g~~v~IqG~GnVG~~~a~~L~~~Gak-vv~~d~   70 (230)
T d1leha1          36 SLEGLAVSVQGLGNVAKALCKKLNTEGAK-LVVTDV   70 (230)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCE-EEEECS
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCE-EEeecc
Confidence            37888999999999999999999999965 666654

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=89.26  E-value=0.18  Score=40.27  Aligned_cols=31  Identities=10%  Similarity=0.051  Sum_probs=27.9

Q ss_pred             CcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        32 ~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      .-|+|||.|+.|.+.|..+++.|.+ ++++|.
T Consensus         4 yDvvVIGgGpaGl~aA~~aa~~G~k-V~vie~   34 (221)
T d1dxla1           4 NDVVIIGGGPGGYVAAIKAAQLGFK-TTCIEK   34 (221)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHTCC-EEEEEC
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCc-EEEEEe
Confidence            4589999999999999999999975 888876

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=89.19  E-value=0.2  Score=41.54  Aligned_cols=37  Identities=22%  Similarity=0.215  Sum_probs=31.1

Q ss_pred             HHhcCcEEEEcC-c--hhHHHHHHHHHHhCCCcEEEEcCCc
Q 020565           28 RLSKSHILVCGM-K--GTVAEFCKNIVLAGVGSLTLMDDRV   65 (324)
Q Consensus        28 ~l~~~~VliiG~-g--~lGsei~k~L~~~Gv~~i~lvD~d~   65 (324)
                      +|++++++|.|+ |  |+|.++|+.|+..|.. +.+.+.+.
T Consensus         3 ~l~gK~~lItGaag~~GIG~aiA~~la~~Ga~-Vil~~~~~   42 (268)
T d2h7ma1           3 LLDGKRILVSGIITDSSIAFHIARVAQEQGAQ-LVLTGFDR   42 (268)
T ss_dssp             TTTTCEEEECCCSSTTCHHHHHHHHHHHTTCE-EEEEECSC
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHcCCE-EEEEeCCh
Confidence            478999999995 3  5999999999999975 88877654

>d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Leishmania major [TaxId: 5664]

Probab=89.17  E-value=0.73  Score=38.12  Aligned_cols=90  Identities=14%  Similarity=0.132  Sum_probs=52.8

Q ss_pred             EEEE-cC-chhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEeeC
Q 020565           34 ILVC-GM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKG  111 (324)
Q Consensus        34 Vlii-G~-g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~~  111 (324)
                      |.|| |. +|+|.++|+.|+..|.. +.+.|.                  -   .+.+++.+++.+.+.++...+.. ..
T Consensus         4 VAlITGas~GIG~aiA~~la~~Ga~-V~i~~~------------------~---~~~~~~~~~~~l~~~~~~~~~~~-~~   60 (284)
T d1e7wa_           4 VALVTGAAKRLGRSIAEGLHAEGYA-VCLHYH------------------R---SAAEANALSATLNARRPNSAITV-QA   60 (284)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTCE-EEEEES------------------S---CHHHHHHHHHHHHHHSTTCEEEE-EC
T ss_pred             EEEEeCCCCHHHHHHHHHHHHcCCE-EEEEeC------------------C---CHHHHHHHHHHHHhhcCCceEEE-Ee
Confidence            5555 65 78999999999999986 666553                  1   45578889999999988754433 23


Q ss_pred             CCCCCchhhcCCccEEEEcCCCHHHHHHHHHHHHh
Q 020565          112 DLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRK  146 (324)
Q Consensus       112 ~~~~~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~  146 (324)
                      +.........+..+...+.++.......+.+...+
T Consensus        61 d~~~~~~~~~~~~~~~~dv~~~~~v~~~~~~~~~~   95 (284)
T d1e7wa_          61 DLSNVATAPVSGADGSAPVTLFTRCAELVAACYTH   95 (284)
T ss_dssp             CCSSSCBCCCC----CCCBCHHHHHHHHHHHHHHH
T ss_pred             ecccccccccccccccccCCCHHHHHHHHHHHHHH
Confidence            32221111111222223333344455566666666

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.11  E-value=0.78  Score=39.24  Aligned_cols=77  Identities=14%  Similarity=0.170  Sum_probs=53.2

Q ss_pred             HHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEe
Q 020565           28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVS  107 (324)
Q Consensus        28 ~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~  107 (324)
                      .+++++||-+||| .| .++..++++|..+++.+|.                      . ..++.+++..++.+-.-+++
T Consensus        36 ~~~~~~VLDlGcG-tG-~ls~~aa~~Ga~~V~avd~----------------------s-~~~~~a~~~~~~~~~~~~i~   90 (328)
T d1g6q1_          36 LFKDKIVLDVGCG-TG-ILSMFAAKHGAKHVIGVDM----------------------S-SIIEMAKELVELNGFSDKIT   90 (328)
T ss_dssp             HHTTCEEEEETCT-TS-HHHHHHHHTCCSEEEEEES----------------------S-THHHHHHHHHHHTTCTTTEE
T ss_pred             cCCcCEEEEeCCC-CC-HHHHHHHHhCCCEEEEEeC----------------------C-HHHHHHHHHHHHhCccccce
Confidence            3588999999998 35 4567888999998988876                      2 13556666777777666777


Q ss_pred             EeeCCCCCCchhhcCCccEEEEc
Q 020565          108 VEKGDLSSLDGEFYDKFDVVVVS  130 (324)
Q Consensus       108 ~~~~~~~~~~~~~~~~~diVi~~  130 (324)
                      ....+..+.... -..+|+|+..
T Consensus        91 ~i~~~~~~l~~~-~~~~D~i~se  112 (328)
T d1g6q1_          91 LLRGKLEDVHLP-FPKVDIIISE  112 (328)
T ss_dssp             EEESCTTTSCCS-SSCEEEEEEC
T ss_pred             EEEeehhhccCc-ccceeEEEEE
Confidence            776665543211 1468998864

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=89.09  E-value=0.33  Score=37.60  Aligned_cols=31  Identities=13%  Similarity=0.097  Sum_probs=25.5

Q ss_pred             cCcEEEEc-CchhHHHHHHHHHHhCCCcEEEE
Q 020565           31 KSHILVCG-MKGTVAEFCKNIVLAGVGSLTLM   61 (324)
Q Consensus        31 ~~~VliiG-~g~lGsei~k~L~~~Gv~~i~lv   61 (324)
                      ..+|+|.| +|++|..++..+...|...+..+
T Consensus        26 g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~   57 (183)
T d1pqwa_          26 GERVLIHSATGGVGMAAVSIAKMIGARIYTTA   57 (183)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHHTCEEEEEE
T ss_pred             CCEEEEECCCCCcccccchhhccccccceeee
Confidence            36788878 59999999999999998766554

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.06  E-value=0.21  Score=37.29  Aligned_cols=56  Identities=7%  Similarity=-0.057  Sum_probs=38.5

Q ss_pred             cCcEEEEcCchhHHHHHHHHHH----hCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhh
Q 020565           31 KSHILVCGMKGTVAEFCKNIVL----AGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDF  100 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~~----~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~l  100 (324)
                      .++++|||.|.+|+|+|-.|++    .|+ ++++++...--   +.+.       .   ++.-++.+.+.+++.
T Consensus        37 ~k~i~IvGgG~~G~E~A~~l~~~~~~~g~-~Vt~i~~~~~~---l~~~-------~---~~~~~~~~~~~l~~~   96 (137)
T d1m6ia2          37 VKSITIIGGGFLGSELACALGRKARALGT-EVIQLFPEKGN---MGKI-------L---PEYLSNWTMEKVRRE   96 (137)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHHHHTC-EEEEECSSSST---TTTT-------S---CHHHHHHHHHHHHTT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHHHHhcCC-EEEEecccccC---Cccc-------C---CHHHHHHHHHHHHhC
Confidence            4679999999999999999974    466 58888772221   1111       2   554566677777764

>d1gq2a1 c.2.1.7 (A:280-580) Mitochondrial NAD(P)-dependent malic enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Domestic pigeon (Columba livia) [TaxId: 8932]

Probab=88.91  E-value=0.091  Score=44.97  Aligned_cols=42  Identities=21%  Similarity=0.323  Sum_probs=35.8

Q ss_pred             HHHhcCcEEEEcCchhHHHHHHHHHHh----------CCCcEEEEcCCcccc
Q 020565           27 RRLSKSHILVCGMKGTVAEFCKNIVLA----------GVGSLTLMDDRVVTE   68 (324)
Q Consensus        27 ~~l~~~~VliiG~g~lGsei~k~L~~~----------Gv~~i~lvD~d~v~~   68 (324)
                      ++|++.||++.|+|+.|.-+++.|+.+          |.++|.++|..-+=.
T Consensus        21 k~l~d~kiV~~GAGsAg~gia~~l~~~~~~~G~~~~~a~~~i~l~D~kGlv~   72 (298)
T d1gq2a1          21 NRLSDHTVLFQGAGEAALGIANLIVMAMQKEGVSKEEAIKRIWMVDSKGLIV   72 (298)
T ss_dssp             SCGGGCCEEEECCSHHHHHHHHHHHHHHHHHTCCHHHHHTTEEEEETTEECB
T ss_pred             CCHHHcEEEEECccHHHHHHHHHHHHHHHHcCCChhhccceEEEEeCCCccc
Confidence            579999999999999999999999866          567999999865433

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=88.76  E-value=0.62  Score=38.43  Aligned_cols=53  Identities=17%  Similarity=0.201  Sum_probs=39.7

Q ss_pred             HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCC
Q 020565           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPM  103 (324)
Q Consensus        29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~  103 (324)
                      |..+.|+|.|. +|+|.++|+.|+..|.. +.+.+.                  -   .+.+.+.+.+.+++....
T Consensus         4 L~GK~alITGas~GIG~aia~~la~~G~~-Vvi~~~------------------~---~~~~~~~~~~~~~~~g~~   57 (259)
T d1ja9a_           4 LAGKVALTTGAGRGIGRGIAIELGRRGAS-VVVNYG------------------S---SSKAAEEVVAELKKLGAQ   57 (259)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEES------------------S---CHHHHHHHHHHHHHTTCC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCCE-EEEEcC------------------C---ChHHHHHHHHHHHHcCCC
Confidence            67788999985 68999999999999987 555433                  0   444667777788776653

>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=88.66  E-value=0.39  Score=36.57  Aligned_cols=88  Identities=17%  Similarity=0.206  Sum_probs=50.3

Q ss_pred             CcEEEEcC-chhHHHHHHHHHHhC--CCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeE
Q 020565           32 SHILVCGM-KGTVAEFCKNIVLAG--VGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV  108 (324)
Q Consensus        32 ~~VliiG~-g~lGsei~k~L~~~G--v~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~  108 (324)
                      -+|.|+|+ |-+|.|+++.|..-.  +.++..+..               .+..   |+.        +....+..... 
T Consensus         2 ~kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s---------------~~s~---G~~--------~~~~~~~~~~~-   54 (154)
T d2gz1a1           2 YTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLAS---------------ARSA---GKS--------LKFKDQDITIE-   54 (154)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEEC---------------GGGT---TCE--------EEETTEEEEEE-
T ss_pred             CEEEEECCCcHHHHHHHHHHHcCCCCceEEEEecc---------------cccc---ccc--------ccccCCccccc-
Confidence            37999998 669999999998874  344544433               2222   431        11111111111 


Q ss_pred             eeCCCCCCchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEE
Q 020565          109 EKGDLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYT  155 (324)
Q Consensus       109 ~~~~~~~~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~  155 (324)
                            ...+..+.+.|+++.+..+.....+..+.. .  .++.+|+
T Consensus        55 ------~~~~~~~~~~d~~f~~~~~~~s~~~~~~~~-~--~~~~VID   92 (154)
T d2gz1a1          55 ------ETTETAFEGVDIALFSAGSSTSAKYAPYAV-K--AGVVVVD   92 (154)
T ss_dssp             ------ECCTTTTTTCSEEEECSCHHHHHHHHHHHH-H--TTCEEEE
T ss_pred             ------ccchhhhhhhhhhhhccCccchhhHHhhhc-c--ccceehh
Confidence                  112344568899999988766665555444 4  4555554

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=88.65  E-value=0.16  Score=43.29  Aligned_cols=32  Identities=13%  Similarity=0.103  Sum_probs=28.9

Q ss_pred             cCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      ...|+|||+|..|..+|+.|...|+. ++++|.
T Consensus         7 ~~dV~IIGAG~sGl~~a~~L~~~G~~-v~i~Ek   38 (298)
T d1w4xa1           7 EVDVLVVGAGFSGLYALYRLRELGRS-VHVIET   38 (298)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCC-EEEECS
T ss_pred             CCCEEEECccHHHHHHHHHHHhCCCC-EEEEEc
Confidence            34699999999999999999999994 889886

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=88.62  E-value=0.16  Score=40.51  Aligned_cols=33  Identities=9%  Similarity=0.070  Sum_probs=29.0

Q ss_pred             CcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCc
Q 020565           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV   65 (324)
Q Consensus        32 ~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~   65 (324)
                      .-|+|||+|..|.+.|..+++.|-+ ++|+|.+.
T Consensus         3 yDvvVIG~G~aG~~aA~~a~~~G~k-V~iiE~~~   35 (217)
T d1gesa1           3 YDYIAIGGGSGGIASINRAAMYGQK-CALIEAKE   35 (217)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCC-EEEEESSC
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCE-EEEEeccC
Confidence            3589999999999999999999975 99988653

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=88.62  E-value=0.14  Score=40.09  Aligned_cols=34  Identities=15%  Similarity=0.079  Sum_probs=29.8

Q ss_pred             hcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (324)
Q Consensus        30 ~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d   64 (324)
                      +..+|+|||.|..|.+.|..|++.|.. ++|+|..
T Consensus         4 k~~dVvIIGGGpaGl~AA~~~ar~g~~-v~iie~~   37 (190)
T d1trba1           4 KHSKLLILGSGPAGYTAAVYAARANLQ-PVLITGM   37 (190)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTTCC-CEEECCS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCc-eEEEEee
Confidence            456799999999999999999999985 7888754

>d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.58  E-value=0.11  Score=44.47  Aligned_cols=40  Identities=20%  Similarity=0.275  Sum_probs=34.9

Q ss_pred             HHHhcCcEEEEcCchhHHHHHHHHHHhCC----------CcEEEEcCCcc
Q 020565           27 RRLSKSHILVCGMKGTVAEFCKNIVLAGV----------GSLTLMDDRVV   66 (324)
Q Consensus        27 ~~l~~~~VliiG~g~lGsei~k~L~~~Gv----------~~i~lvD~d~v   66 (324)
                      ++|.+.||++.|+|+-|.-+++.|+.+++          ++|.++|.+-+
T Consensus        21 k~l~d~kiv~~GAGsAg~gia~ll~~~~~~~g~~~~~a~~~i~lvD~~Gl   70 (294)
T d1pj3a1          21 KPISEHKILFLGAGEAALGIANLIVMSMVENGLSEQEAQKKIWMFDKYGL   70 (294)
T ss_dssp             CCGGGCCEEEECCSHHHHHHHHHHHHHHHHTTCCHHHHHHTEEEEETTEE
T ss_pred             CCHHHcEEEEECccHHHHHHHHHHHHHHHhcCCchhhccccEEEEeCCCC
Confidence            57999999999999999999999888765          47999998653

>d1o0sa1 c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent malic enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Pig roundworm (Ascaris suum) [TaxId: 6253]

Probab=88.43  E-value=0.081  Score=45.46  Aligned_cols=41  Identities=20%  Similarity=0.204  Sum_probs=34.7

Q ss_pred             HHHhcCcEEEEcCchhHHHHHHHHHHhC----------CCcEEEEcCCccc
Q 020565           27 RRLSKSHILVCGMKGTVAEFCKNIVLAG----------VGSLTLMDDRVVT   67 (324)
Q Consensus        27 ~~l~~~~VliiG~g~lGsei~k~L~~~G----------v~~i~lvD~d~v~   67 (324)
                      ++|.+.||+|.|+|+.|.-+++.|+.++          .++|.++|.+-+-
T Consensus        21 k~l~d~kivi~GAGaAg~gia~~l~~~~~~~G~~~~~a~~~i~~vD~~Glv   71 (308)
T d1o0sa1          21 KLVSQEKYLFFGAGAASTGIAEMIVHQMQNEGISKEEACNRIYLMDIDGLV   71 (308)
T ss_dssp             CCGGGCCEEEECCSHHHHHHHHHHHHHHHTTTCCHHHHHHTEEEEETTEEC
T ss_pred             CCHHHcEEEEECcCHHHHHHHHHHHHHHHhcCCchhhhhceEEEEeCCCCc
Confidence            5789999999999999999999998773          3479999986543

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=88.24  E-value=0.54  Score=37.98  Aligned_cols=91  Identities=8%  Similarity=0.010  Sum_probs=48.1

Q ss_pred             cCcEEEEcCchhHHH-HHHHHHHh-CCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCC-CeEe
Q 020565           31 KSHILVCGMKGTVAE-FCKNIVLA-GVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPM-VRVS  107 (324)
Q Consensus        31 ~~~VliiG~g~lGse-i~k~L~~~-Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~-v~v~  107 (324)
                      .-||.|||||..|.. .+..+... ++.-+.++|.                      ...+++.+++..   +-. ..+.
T Consensus        33 ~iriaiIG~G~~~~~~~~~~~~~~~~~~ivav~d~----------------------~~~~a~~~~~~~---~i~~~~~~   87 (221)
T d1h6da1          33 RFGYAIVGLGKYALNQILPGFAGCQHSRIEALVSG----------------------NAEKAKIVAAEY---GVDPRKIY   87 (221)
T ss_dssp             CEEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECS----------------------CHHHHHHHHHHT---TCCGGGEE
T ss_pred             CEEEEEEcCcHHHHHHHHHHHHhCCCceEEEEecC----------------------CHHHHHHHHHhh---cccccccc
Confidence            458999999999964 56666544 3322224443                      344554444333   211 1222


Q ss_pred             EeeCCCCCCchhhc--CCccEEEEcCCCHHHHHHHHHHHHhccCCccEE
Q 020565          108 VEKGDLSSLDGEFY--DKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFY  154 (324)
Q Consensus       108 ~~~~~~~~~~~~~~--~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i  154 (324)
                      .+ .++    ++++  .+.|+|+.|+-+. ....+...|-+  .+++++
T Consensus        88 ~~-~d~----~ell~~~~iD~V~I~tp~~-~H~~~~~~al~--~gk~v~  128 (221)
T d1h6da1          88 DY-SNF----DKIAKDPKIDAVYIILPNS-LHAEFAIRAFK--AGKHVM  128 (221)
T ss_dssp             CS-SSG----GGGGGCTTCCEEEECSCGG-GHHHHHHHHHH--TTCEEE
T ss_pred             cc-Cch----hhhcccccceeeeeccchh-hhhhHHHHhhh--cchhhh
Confidence            21 112    3333  3688998887664 33445555555  666444

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=88.02  E-value=0.27  Score=38.99  Aligned_cols=35  Identities=14%  Similarity=0.116  Sum_probs=30.2

Q ss_pred             cCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCcc
Q 020565           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVV   66 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v   66 (324)
                      +.-|+|||.|+.|.+.|..+++.|.+ ++++|.+.+
T Consensus         3 ~~DviVIG~GpaGl~aA~~aar~G~k-V~vIEk~~~   37 (223)
T d1ebda1           3 ETETLVVGAGPGGYVAAIRAAQLGQK-VTIVEKGNL   37 (223)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCC-EEEEESSCT
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCE-EEEEecCCC
Confidence            35699999999999999999999974 899887543

>d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Archaeal alanine dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=87.98  E-value=0.82  Score=39.15  Aligned_cols=71  Identities=17%  Similarity=0.059  Sum_probs=52.5

Q ss_pred             CcEEEEcCchhHHHHHHHHHH-hCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEee
Q 020565           32 SHILVCGMKGTVAEFCKNIVL-AGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEK  110 (324)
Q Consensus        32 ~~VliiG~g~lGsei~k~L~~-~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~  110 (324)
                      .++.|+|+|..+-.-+..|.. ..+.++.+++.                      ...+++..++.++..+..+.+.   
T Consensus       126 ~~l~iiGaG~QA~~~~~al~~~~~i~~i~v~~r----------------------~~e~~~~~~~~~~~~~~~~~~~---  180 (320)
T d1omoa_         126 SVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDV----------------------REKAAKKFVSYCEDRGISASVQ---  180 (320)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCCEEEEECS----------------------SHHHHHHHHHHHHHTTCCEEEC---
T ss_pred             cEEEEecCcccHHHHHHHHHHHhhhhhcccccC----------------------CHHHHHHHHHHHHhcCCccccc---
Confidence            568999999999888887764 45788888755                      4557788888888876544321   


Q ss_pred             CCCCCCchhhcCCccEEEEcCCC
Q 020565          111 GDLSSLDGEFYDKFDVVVVSCCS  133 (324)
Q Consensus       111 ~~~~~~~~~~~~~~diVi~~~~~  133 (324)
                            ..+...++|+|+.|+.+
T Consensus       181 ------~~~a~~~aDiV~taT~s  197 (320)
T d1omoa_         181 ------PAEEASRCDVLVTTTPS  197 (320)
T ss_dssp             ------CHHHHTSSSEEEECCCC
T ss_pred             ------hhhhhccccEEEEeccC
Confidence                  13446789999998865

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.95  E-value=0.26  Score=39.25  Aligned_cols=36  Identities=11%  Similarity=0.087  Sum_probs=30.7

Q ss_pred             cCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccc
Q 020565           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVT   67 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~   67 (324)
                      +.-|+|||.|+.|.+.|..+++.|- +++|+|.+.+-
T Consensus         3 ~yDviIIG~GpaG~~aA~~aar~G~-kV~vIEk~~~G   38 (221)
T d3grsa1           3 SYDYLVIGGGSGGLASARRAAELGA-RAAVVESHKLG   38 (221)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTC-CEEEEESSCTT
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC-EEEEEeccCCC
Confidence            3458999999999999999999996 49999886543

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=87.93  E-value=0.21  Score=42.92  Aligned_cols=35  Identities=11%  Similarity=0.069  Sum_probs=30.1

Q ss_pred             HhcCcEEEEcCch-hHHHHHHHHHHhCCCcEEEEcCC
Q 020565           29 LSKSHILVCGMKG-TVAEFCKNIVLAGVGSLTLMDDR   64 (324)
Q Consensus        29 l~~~~VliiG~g~-lGsei~k~L~~~Gv~~i~lvD~d   64 (324)
                      ++++||||.|.+| +|+.++..|...|.. +..+|..
T Consensus         6 ~~~KkILVTG~tGfIGs~lv~~Ll~~g~~-V~~~~r~   41 (356)
T d1rkxa_           6 WQGKRVFVTGHTGFKGGWLSLWLQTMGAT-VKGYSLT   41 (356)
T ss_dssp             HTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESS
T ss_pred             hCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEECC
Confidence            6889999999755 999999999999985 7777764

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.92  E-value=0.37  Score=37.19  Aligned_cols=32  Identities=22%  Similarity=0.254  Sum_probs=26.1

Q ss_pred             hcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEE
Q 020565           30 SKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLM   61 (324)
Q Consensus        30 ~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lv   61 (324)
                      ...+|+|.|+ |++|...+..+...|...+.++
T Consensus        28 ~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~   60 (174)
T d1yb5a2          28 AGESVLVHGASGGVGLAACQIARAYGLKILGTA   60 (174)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCCEEEEEeccccccccccccccccCccccccc
Confidence            3557999996 9999999999999998754444

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.89  E-value=1.1  Score=38.02  Aligned_cols=32  Identities=16%  Similarity=0.308  Sum_probs=26.7

Q ss_pred             CcE-EEEcCch-hHHHHHHHHHHhCCCcEEEEcCC
Q 020565           32 SHI-LVCGMKG-TVAEFCKNIVLAGVGSLTLMDDR   64 (324)
Q Consensus        32 ~~V-liiG~g~-lGsei~k~L~~~Gv~~i~lvD~d   64 (324)
                      +|| ||.|+.| +|+.+++.|...|.. ++.+|..
T Consensus         1 kKI~LVTG~tGfIG~~l~~~Ll~~g~~-V~~i~r~   34 (347)
T d1t2aa_           1 RNVALITGITGQDGSYLAEFLLEKGYE-VHGIVRR   34 (347)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEECC
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHCcCE-EEEEECC
Confidence            478 8999866 999999999999975 7777763

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=87.79  E-value=1.2  Score=36.30  Aligned_cols=23  Identities=22%  Similarity=0.281  Sum_probs=20.0

Q ss_pred             EEEEcC-chhHHHHHHHHHHhCCC
Q 020565           34 ILVCGM-KGTVAEFCKNIVLAGVG   56 (324)
Q Consensus        34 VliiG~-g~lGsei~k~L~~~Gv~   56 (324)
                      |+|-|+ +|+|.++|+.|+..|..
T Consensus         4 vlITGas~GIG~aia~~la~~G~~   27 (240)
T d2bd0a1           4 LLITGAGKGIGRAIALEFARAARH   27 (240)
T ss_dssp             EEEETTTSHHHHHHHHHHHHHTTT
T ss_pred             EEEccCCCHHHHHHHHHHHHhCcc
Confidence            466786 68999999999999986

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=87.79  E-value=0.17  Score=42.25  Aligned_cols=35  Identities=14%  Similarity=0.131  Sum_probs=30.6

Q ss_pred             HHhcCcEEEEcC-c--hhHHHHHHHHHHhCCCcEEEEcC
Q 020565           28 RLSKSHILVCGM-K--GTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        28 ~l~~~~VliiG~-g--~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      .|++++++|.|. |  |+|.++|+.|+..|.. +.++|.
T Consensus         2 ~L~gK~alITGaag~~GIG~AiA~~la~~Ga~-V~i~~r   39 (274)
T d2pd4a1           2 FLKGKKGLIVGVANNKSIAYGIAQSCFNQGAT-LAFTYL   39 (274)
T ss_dssp             TTTTCEEEEECCCSTTSHHHHHHHHHHTTTCE-EEEEES
T ss_pred             cCCCCEEEEECCCCCcHHHHHHHHHHHHCCCE-EEEEeC
Confidence            478999999996 3  6999999999999987 888774

>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=87.73  E-value=1.1  Score=38.24  Aligned_cols=107  Identities=21%  Similarity=0.252  Sum_probs=60.7

Q ss_pred             cCcEEEEcC-chhHHHHHHHHHHhCCC-cEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeE
Q 020565           31 KSHILVCGM-KGTVAEFCKNIVLAGVG-SLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV  108 (324)
Q Consensus        31 ~~~VliiG~-g~lGsei~k~L~~~Gv~-~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~  108 (324)
                      -.+|||.|+ |=+|+.+++.|...|-. +++.+|.  .+..                +. +     ..+..+. .-+++.
T Consensus         2 ~mkILVTGgtGfIGs~lv~~L~~~g~~v~v~~~d~--~~~~----------------~~-~-----~~~~~~~-~~~i~~   56 (346)
T d1oc2a_           2 FKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDK--LTYA----------------GN-K-----ANLEAIL-GDRVEL   56 (346)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEEC--CCTT----------------CC-G-----GGTGGGC-SSSEEE
T ss_pred             cCEEEEeCCCcHHHHHHHHHHHHCCCCeEEEEEeC--CCcc----------------cc-H-----HHHHHhh-cCCeEE
Confidence            367999996 55999999999999964 3555553  1110                00 0     0001111 124455


Q ss_pred             eeCCCCC--CchhhcCCccEEEEcCCC--H-------H--------HHHHHHHHHHhccCCccEEEeeecCceEE
Q 020565          109 EKGDLSS--LDGEFYDKFDVVVVSCCS--V-------T--------TKKLINEKCRKLSKRVAFYTVDCRDSCGE  164 (324)
Q Consensus       109 ~~~~~~~--~~~~~~~~~diVi~~~~~--~-------~--------~~~~l~~~~~~~~~~ip~i~~~~~G~~g~  164 (324)
                      +..++.+  ....++..++.|+.....  .       .        ....+-+.|+.  .++.+|...+...+|.
T Consensus        57 ~~~Di~d~~~~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~N~~g~~nll~~~~~--~~~k~i~~ss~~vyg~  129 (346)
T d1oc2a_          57 VVGDIADAELVDKLAAKADAIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARK--YDIRFHHVSTDEVYGD  129 (346)
T ss_dssp             EECCTTCHHHHHHHHTTCSEEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHH--HTCEEEEEEEGGGGCC
T ss_pred             EEccCCCHHHHHHHHhhhhhhhhhhhcccccchhhCcccceeeehHhHHhhhhhhcc--ccccccccccceEecc
Confidence            5555543  234556677776655321  1       0        11233456777  7778888888877763

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=87.59  E-value=1.5  Score=35.67  Aligned_cols=78  Identities=14%  Similarity=0.108  Sum_probs=52.5

Q ss_pred             hcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEe
Q 020565           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVE  109 (324)
Q Consensus        30 ~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~  109 (324)
                      ++++||=+|||. |.- +..++..|.++++=+|.                      -..-.+.++++.++.+...++...
T Consensus        24 ~~~~VLDlGCG~-G~~-~~~~~~~~~~~v~GiD~----------------------S~~~l~~A~~r~~~~~~~~~v~f~   79 (252)
T d1ri5a_          24 RGDSVLDLGCGK-GGD-LLKYERAGIGEYYGVDI----------------------AEVSINDARVRARNMKRRFKVFFR   79 (252)
T ss_dssp             TTCEEEEETCTT-TTT-HHHHHHHTCSEEEEEES----------------------CHHHHHHHHHHHHTSCCSSEEEEE
T ss_pred             CcCEEEEecccC-cHH-HHHHHHcCCCeEEEecC----------------------CHHHHHHHHHHHHhcCCCcceEEE
Confidence            457899999984 644 45567889998988887                      222335667777777766677777


Q ss_pred             eCCCCCCchhhcCCccEEEEcC
Q 020565          110 KGDLSSLDGEFYDKFDVVVVSC  131 (324)
Q Consensus       110 ~~~~~~~~~~~~~~~diVi~~~  131 (324)
                      ..+........-..||+|++..
T Consensus        80 ~~D~~~~~~~~~~~fD~V~~~~  101 (252)
T d1ri5a_          80 AQDSYGRHMDLGKEFDVISSQF  101 (252)
T ss_dssp             ESCTTTSCCCCSSCEEEEEEES
T ss_pred             EcchhhhcccccccceEEEEcc
Confidence            6665433222234799998754

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=87.45  E-value=0.28  Score=40.91  Aligned_cols=37  Identities=11%  Similarity=0.214  Sum_probs=32.3

Q ss_pred             HHHhcCcEEEEcCchhHHHHHHHHHH-hCCCcEEEEcCC
Q 020565           27 RRLSKSHILVCGMKGTVAEFCKNIVL-AGVGSLTLMDDR   64 (324)
Q Consensus        27 ~~l~~~~VliiG~g~lGsei~k~L~~-~Gv~~i~lvD~d   64 (324)
                      .+..+.-|+|||+|..|..+|..|++ .|.+ ++++|..
T Consensus        29 ~~~~e~DViVIGaGpaGL~aA~~LA~~~G~~-V~vlE~~   66 (278)
T d1rp0a1          29 ITYAETDVVVVGAGSAGLSAAYEISKNPNVQ-VAIIEQS   66 (278)
T ss_dssp             HHHTEEEEEEECCSHHHHHHHHHHHTSTTSC-EEEEESS
T ss_pred             ccccCCCEEEECCCHHHHHHHHHHHHccCCe-EEEEecC
Confidence            35678889999999999999999997 6986 9999873

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.40  E-value=0.21  Score=41.44  Aligned_cols=36  Identities=22%  Similarity=0.381  Sum_probs=31.7

Q ss_pred             HHHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           27 RRLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        27 ~~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      .||+.+.++|.|. +|+|.++++.|+..|.. +.+.|.
T Consensus         2 ~rl~GK~alITGas~GIG~aia~~la~~Ga~-V~i~~r   38 (250)
T d1ydea1           2 TRYAGKVVVVTGGGRGIGAGIVRAFVNSGAR-VVICDK   38 (250)
T ss_dssp             CTTTTCEEEEETCSSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEEC
Confidence            3789999999996 78999999999999985 888775

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=87.35  E-value=0.21  Score=36.84  Aligned_cols=35  Identities=11%  Similarity=0.036  Sum_probs=26.5

Q ss_pred             cCcEEEEcCchhHHHHHHHHHH-hCCCcEEEEcCCc
Q 020565           31 KSHILVCGMKGTVAEFCKNIVL-AGVGSLTLMDDRV   65 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~~-~Gv~~i~lvD~d~   65 (324)
                      +-+|+|+|+|.+|..+++.|-. .|..=+.++|+|.
T Consensus         3 ~~~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiDdd~   38 (126)
T d2dt5a2           3 KWGLCIVGMGRLGSALADYPGFGESFELRGFFDVDP   38 (126)
T ss_dssp             CEEEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCT
T ss_pred             CceEEEEcCCHHHHHHHHhHhhcCCcEEEEEEeCch
Confidence            3489999999999999987753 3555566778753

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=87.33  E-value=0.21  Score=41.13  Aligned_cols=36  Identities=22%  Similarity=0.273  Sum_probs=31.1

Q ss_pred             HHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCC
Q 020565           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDR   64 (324)
Q Consensus        28 ~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d   64 (324)
                      +|++++++|.|. +|+|.++++.|+..|.. +.+.|.+
T Consensus         2 ~L~gK~~lITGas~GIG~aia~~l~~~G~~-V~~~~r~   38 (242)
T d1ulsa_           2 RLKDKAVLITGAAHGIGRATLELFAKEGAR-LVACDIE   38 (242)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEESC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECC
Confidence            478899999996 68999999999999985 8888763

>d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD)
species: Salmonella enterica serovar typhimurium [TaxId: 90371]

Probab=87.26  E-value=1.3  Score=36.19  Aligned_cols=107  Identities=12%  Similarity=0.113  Sum_probs=57.7

Q ss_pred             cEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEeeC
Q 020565           33 HILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKG  111 (324)
Q Consensus        33 ~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~~  111 (324)
                      ||||.|. |=+|+.+++.|...|  +++.+|...-.       +   ..|+   -  ..+.+.+.++...|++-+..-. 
T Consensus         2 KILItG~tGfiG~~l~~~L~~~g--~~v~~~~~~~~-------~---~~Dl---~--~~~~~~~~i~~~~~D~Vih~Aa-   63 (298)
T d1n2sa_           2 NILLFGKTGQVGWELQRSLAPVG--NLIALDVHSKE-------F---CGDF---S--NPKGVAETVRKLRPDVIVNAAA-   63 (298)
T ss_dssp             EEEEECTTSHHHHHHHHHTTTTS--EEEEECTTCSS-------S---CCCT---T--CHHHHHHHHHHHCCSEEEECCC-
T ss_pred             EEEEECCCCHHHHHHHHHHHhCC--CEEEEECCCcc-------c---cCcC---C--CHHHHHHHHHHcCCCEEEEecc-
Confidence            6999997 669999999998776  56666543211       1   1233   1  2344556666667765443211 


Q ss_pred             CCCCCchhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEeeecCceE
Q 020565          112 DLSSLDGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTVDCRDSCG  163 (324)
Q Consensus       112 ~~~~~~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~~~~G~~g  163 (324)
                       ... ........+...  ..+......+.+.|++  .++.++...+...++
T Consensus        64 -~~~-~~~~~~~~~~~~--~~n~~~~~~l~~~~~~--~~~~~~~~ss~~~~~  109 (298)
T d1n2sa_          64 -HTA-VDKAESEPELAQ--LLNATSVEAIAKAANE--TGAWVVHYSTDYVFP  109 (298)
T ss_dssp             -CCC-HHHHTTCHHHHH--HHHTHHHHHHHHHHTT--TTCEEEEEEEGGGSC
T ss_pred             -ccc-ccccccCccccc--cccccccccchhhhhc--ccccccccccccccc
Confidence             100 000000000000  0122334567788888  888888877766554

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=87.25  E-value=0.21  Score=41.98  Aligned_cols=36  Identities=19%  Similarity=0.399  Sum_probs=31.3

Q ss_pred             HHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCC
Q 020565           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDR   64 (324)
Q Consensus        28 ~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d   64 (324)
                      +|++++++|-|. +|+|.++|+.|+..|.. +.++|.+
T Consensus         2 ~L~gK~alITGas~GIG~aia~~la~~Ga~-V~i~~r~   38 (276)
T d1bdba_           2 KLKGEAVLITGGASGLGRALVDRFVAEGAK-VAVLDKS   38 (276)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECC
Confidence            478899999996 68999999999999985 8888763

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=87.19  E-value=0.23  Score=39.27  Aligned_cols=35  Identities=14%  Similarity=0.114  Sum_probs=30.6

Q ss_pred             HHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565           28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        28 ~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      .+..+++.|+|+|.+|.++++.+...|.. +..+|+
T Consensus        41 ~l~~k~vgiiG~G~IG~~va~~~~~fg~~-v~~~d~   75 (184)
T d1ygya1          41 EIFGKTVGVVGLGRIGQLVAQRIAAFGAY-VVAYDP   75 (184)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTTCE-EEEECT
T ss_pred             cccceeeeeccccchhHHHHHHhhhccce-EEeecC
Confidence            47889999999999999999999988874 777765

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=87.18  E-value=0.2  Score=33.83  Aligned_cols=33  Identities=9%  Similarity=-0.051  Sum_probs=29.6

Q ss_pred             CcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCc
Q 020565           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV   65 (324)
Q Consensus        32 ~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~   65 (324)
                      ++|.|+|.|-+|.-++..-.+.|+. +.++|++.
T Consensus         2 k~vgIlG~GQLgrMl~~Aa~~LG~~-v~vldp~~   34 (78)
T d3etja2           2 KQVCVLGNGQLGRMLRQAGEPLGIA-VWPVGLDA   34 (78)
T ss_dssp             EEEEEEBCSHHHHHHHHHHGGGTEE-EEEECTTS
T ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCE-EEEEcCCC
Confidence            4799999999999999999999997 88888854

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=87.13  E-value=0.24  Score=42.12  Aligned_cols=32  Identities=13%  Similarity=0.243  Sum_probs=28.0

Q ss_pred             cEEEEcCchhHHHHHHHHH-----HhCCCcEEEEcCCc
Q 020565           33 HILVCGMKGTVAEFCKNIV-----LAGVGSLTLMDDRV   65 (324)
Q Consensus        33 ~VliiG~g~lGsei~k~L~-----~~Gv~~i~lvD~d~   65 (324)
                      -|+|||+|..|+.+|..|+     +.|+. ++|+|...
T Consensus         9 DV~IvGaG~aGl~lA~~La~~~~~~~G~~-v~vlEr~~   45 (360)
T d1pn0a1           9 DVLIVGAGPAGLMAARVLSEYVRQKPDLK-VRIIDKRS   45 (360)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHSTTCC-EEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHhcccccCCCc-EEEEcCCC
Confidence            4999999999999999997     57997 99998743

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=87.05  E-value=0.51  Score=38.59  Aligned_cols=75  Identities=11%  Similarity=0.129  Sum_probs=48.2

Q ss_pred             HHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeE
Q 020565           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRV  106 (324)
Q Consensus        28 ~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v  106 (324)
                      .|++++++|.|+ +|+|.++++.|+..|.. +.+.|.+.-...++    +.-.-|+  ....-.+.+.+.+.+....+.+
T Consensus         4 sl~gK~~lITGas~GIG~aia~~la~~Ga~-V~~~~r~~~~~~~~----~~~~~Dv--~~~~~v~~~~~~~~~~~g~iDi   76 (237)
T d1uzma1           4 PFVSRSVLVTGGNRGIGLAIAQRLAADGHK-VAVTHRGSGAPKGL----FGVEVDV--TDSDAVDRAFTAVEEHQGPVEV   76 (237)
T ss_dssp             CCCCCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESSSCCCTTS----EEEECCT--TCHHHHHHHHHHHHHHHSSCSE
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECCcchhcCc----eEEEEec--CCHHHHHHHHHHHHHhcCCceE
Confidence            378899999997 58999999999999975 88888764433332    2234455  1333445555555555444444


Q ss_pred             eEe
Q 020565          107 SVE  109 (324)
Q Consensus       107 ~~~  109 (324)
                      -+.
T Consensus        77 LVn   79 (237)
T d1uzma1          77 LVS   79 (237)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            333

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.91  E-value=0.17  Score=41.76  Aligned_cols=38  Identities=16%  Similarity=0.154  Sum_probs=32.2

Q ss_pred             HHHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCCc
Q 020565           27 RRLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRV   65 (324)
Q Consensus        27 ~~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d~   65 (324)
                      .||++++++|.|. +|+|.++++.|+..|. ++.++|.+.
T Consensus         2 ~~l~gK~alITGas~GIG~aia~~la~~G~-~Vi~~~r~~   40 (245)
T d2ag5a1           2 GRLDGKVIILTAAAQGIGQAAALAFAREGA-KVIATDINE   40 (245)
T ss_dssp             CTTTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCH
Confidence            3688899999885 7899999999999997 488888653

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=86.88  E-value=0.25  Score=40.37  Aligned_cols=44  Identities=11%  Similarity=0.118  Sum_probs=34.4

Q ss_pred             HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCCccccccCCC
Q 020565           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSA   73 (324)
Q Consensus        29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r   73 (324)
                      |++++++|.|. +|+|.++++.|+..|.. +.+.|.+.-.......
T Consensus         2 LkgK~~lVTGas~GIG~aia~~l~~~Ga~-V~~~~r~~~~l~~~~~   46 (234)
T d1o5ia_           2 IRDKGVLVLAASRGIGRAVADVLSQEGAE-VTICARNEELLKRSGH   46 (234)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTCE-EEEEESCHHHHHHTCS
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEECCHHHHHhcCC
Confidence            68899999996 78999999999999985 8888875433333333

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=86.84  E-value=0.19  Score=41.50  Aligned_cols=35  Identities=23%  Similarity=0.280  Sum_probs=30.1

Q ss_pred             HHhcCcEEEEcCc---hhHHHHHHHHHHhCCCcEEEEcC
Q 020565           28 RLSKSHILVCGMK---GTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        28 ~l~~~~VliiG~g---~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      +|++++|+|.|++   |+|.++|+.|+..|.. +.+.|.
T Consensus         2 ~L~gK~~lITGass~~GIG~aiA~~l~~~G~~-V~i~~~   39 (258)
T d1qsga_           2 FLSGKRILVTGVASKLSIAYGIAQAMHREGAE-LAFTYQ   39 (258)
T ss_dssp             TTTTCEEEECCCCSTTSHHHHHHHHHHHTTCE-EEEEES
T ss_pred             cCCCCEEEEECCCCchhHHHHHHHHHHHcCCE-EEEEeC
Confidence            4789999999975   6999999999999987 777765

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=86.81  E-value=0.32  Score=40.89  Aligned_cols=36  Identities=17%  Similarity=0.232  Sum_probs=31.4

Q ss_pred             cCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccc
Q 020565           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVT   67 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~   67 (324)
                      +.-|+|||.|..|..+|..|+..|.+ ++|+|...+.
T Consensus        16 ~~DVlVIG~G~aGl~aA~~la~~G~~-V~lvEK~~~~   51 (308)
T d1y0pa2          16 TVDVVVVGSGGAGFSAAISATDSGAK-VILIEKEPVI   51 (308)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCC-EEEECSSSSS
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCc-EEEEecCCCC
Confidence            34699999999999999999999975 9999986653

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.81  E-value=0.31  Score=38.99  Aligned_cols=32  Identities=6%  Similarity=0.043  Sum_probs=28.3

Q ss_pred             cCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      +.-|+|||.|+.|...|..+++.|.+ ++|+|.
T Consensus         5 ~yDviVIG~GpAGl~aA~~aa~~G~k-V~lie~   36 (233)
T d1v59a1           5 SHDVVIIGGGPAGYVAAIKAAQLGFN-TACVEK   36 (233)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCC-EEEEES
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCc-EEEEEe
Confidence            34589999999999999999999985 888875

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.78  E-value=0.28  Score=41.35  Aligned_cols=29  Identities=14%  Similarity=0.205  Sum_probs=27.3

Q ss_pred             EEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565           34 ILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        34 VliiG~g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      |+|||+|-.|...|..|++.|. +++|+|.
T Consensus         2 ViVIGaG~aGL~aA~~L~~~G~-~V~VlE~   30 (383)
T d2v5za1           2 VVVVGGGISGMAAAKLLHDSGL-NVVVLEA   30 (383)
T ss_dssp             EEEECCBHHHHHHHHHHHHTTC-CEEEEES
T ss_pred             EEEECCCHHHHHHHHHHHhCCC-CEEEEec
Confidence            8999999999999999999998 5999986

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=86.71  E-value=0.24  Score=40.95  Aligned_cols=36  Identities=11%  Similarity=0.052  Sum_probs=31.4

Q ss_pred             HHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565           28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        28 ~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      .|+.++|+|-|.|.+|+.+|+.|...|.+-+.+-|.
T Consensus        28 ~l~g~~v~IqGfGnVG~~~a~~L~~~Gakvv~vsD~   63 (242)
T d1v9la1          28 GIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDI   63 (242)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECS
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEeecc
Confidence            588999999999999999999999999775555554

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=86.70  E-value=0.22  Score=41.99  Aligned_cols=56  Identities=18%  Similarity=0.160  Sum_probs=35.3

Q ss_pred             CCHHHHHHhHHHHHhhhHHHHHHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565            6 LTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (324)
Q Consensus         6 l~~~e~~ry~Rqi~l~g~~~q~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d   64 (324)
                      +++.+...|+..+........  -.-++|||||.|+ |+.+...|...++.++++||-|
T Consensus        53 ~~~~de~~Yhe~l~h~~l~~~--~~p~~vLiiGgG~-G~~~~~~l~~~~~~~i~~VEID  108 (274)
T d1iy9a_          53 TSEKDEFVYHEMVAHVPLFTH--PNPEHVLVVGGGD-GGVIREILKHPSVKKATLVDID  108 (274)
T ss_dssp             EETTTHHHHHHHHHHHHHHHS--SSCCEEEEESCTT-CHHHHHHTTCTTCSEEEEEESC
T ss_pred             eecCchhhchhhhccchhhcc--CCcceEEecCCCC-cHHHHHHHhcCCcceEEEecCC
Confidence            344445677765544433222  2457899999874 5555555555789999998764

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.51  E-value=0.29  Score=40.08  Aligned_cols=36  Identities=17%  Similarity=0.169  Sum_probs=31.3

Q ss_pred             HHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCC
Q 020565           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDR   64 (324)
Q Consensus        28 ~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d   64 (324)
                      .|+.+.++|.|+ +|+|.++++.|+..|.. +.++|.+
T Consensus         2 slkGKvalITGas~GIG~aia~~la~~G~~-V~~~~r~   38 (248)
T d2o23a1           2 SVKGLVAVITGGASGLGLATAERLVGQGAS-AVLLDLP   38 (248)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEECT
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEeCC
Confidence            378889999996 68999999999999995 8888764

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=86.44  E-value=0.44  Score=36.05  Aligned_cols=77  Identities=12%  Similarity=0.135  Sum_probs=50.1

Q ss_pred             HhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeE
Q 020565           29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSV  108 (324)
Q Consensus        29 l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~  108 (324)
                      +++++||=+||| .|+--+..+. -|..+++.+|.                      ...-.+.+++.++..+..-+++.
T Consensus        13 ~~g~~vlDl~~G-tG~~~iea~~-rga~~v~~ve~----------------------~~~a~~~~~~n~~~~~~~~~~~i   68 (152)
T d2esra1          13 FNGGRVLDLFAG-SGGLAIEAVS-RGMSAAVLVEK----------------------NRKAQAIIQDNIIMTKAENRFTL   68 (152)
T ss_dssp             CCSCEEEEETCT-TCHHHHHHHH-TTCCEEEEECC----------------------CHHHHHHHHHHHHTTTCGGGEEE
T ss_pred             CCCCeEEEcCCc-cCHHHHHHHH-hCcceeeeehh----------------------chhhhhhhhhhhhhcccccchhh
Confidence            567888777775 3443334444 58889999987                      44455677777777765556777


Q ss_pred             eeCCCCCCchhhcCCccEEEE
Q 020565          109 EKGDLSSLDGEFYDKFDVVVV  129 (324)
Q Consensus       109 ~~~~~~~~~~~~~~~~diVi~  129 (324)
                      +..+........-..||+|+.
T Consensus        69 i~~D~~~~l~~~~~~fDiIf~   89 (152)
T d2esra1          69 LKMEAERAIDCLTGRFDLVFL   89 (152)
T ss_dssp             ECSCHHHHHHHBCSCEEEEEE
T ss_pred             hcccccccccccccccceeEe
Confidence            666544322333467999987

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=86.19  E-value=0.39  Score=38.40  Aligned_cols=36  Identities=17%  Similarity=0.101  Sum_probs=31.3

Q ss_pred             CcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccc
Q 020565           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVT   67 (324)
Q Consensus        32 ~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~   67 (324)
                      .-|+|||.|+.|..+|..+++.|-+++.|+|...+.
T Consensus         4 YDviIIG~GpaGl~aA~~aa~~g~k~V~iie~~~~~   39 (238)
T d1aoga1           4 FDLVVIGAGSGGLEAAWNAATLYKKRVAVIDVQMVH   39 (238)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTSCCCEEEEESCSSS
T ss_pred             cCEEEECCCHHHHHHHHHHHHcCCCEEEEEEeeccc
Confidence            348999999999999999999998889999875543

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=86.16  E-value=0.34  Score=37.25  Aligned_cols=31  Identities=23%  Similarity=0.274  Sum_probs=27.6

Q ss_pred             cEEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565           33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (324)
Q Consensus        33 ~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d   64 (324)
                      -|+|||.|..|.+.|..+++.|.+ ++++|.+
T Consensus         3 DViIIGgGpaGl~AAi~aar~G~~-v~iie~~   33 (184)
T d1fl2a1           3 DVLIVGSGPAGAAAAIYSARKGIR-TGLMGER   33 (184)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCC-EEEECSS
T ss_pred             cEEEECcCHHHHHHHHHHHHcCCe-EEEEEEe
Confidence            489999999999999999999986 7788753

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=86.12  E-value=0.64  Score=37.75  Aligned_cols=34  Identities=12%  Similarity=0.017  Sum_probs=29.0

Q ss_pred             cCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCCc
Q 020565           31 KSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRV   65 (324)
Q Consensus        31 ~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d~   65 (324)
                      .++|+|.|. +|+|.++++.|+..|.. +.++|...
T Consensus         2 gK~vlITGas~GIG~a~a~~l~~~G~~-V~~~~~~~   36 (236)
T d1dhra_           2 ARRVLVYGGRGALGSRCVQAFRARNWW-VASIDVVE   36 (236)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTTCE-EEEEESSC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEeCCc
Confidence            578999997 68999999999999985 77777644

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=85.75  E-value=0.3  Score=40.32  Aligned_cols=34  Identities=24%  Similarity=0.246  Sum_probs=29.4

Q ss_pred             HhcCcEEEEcCc---hhHHHHHHHHHHhCCCcEEEEcC
Q 020565           29 LSKSHILVCGMK---GTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        29 l~~~~VliiG~g---~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      |++++++|.|++   |+|.++|+.|+..|.. +.+.|.
T Consensus         6 L~gK~alITGas~~~GIG~aiA~~la~~Ga~-V~i~~~   42 (256)
T d1ulua_           6 LSGKKALVMGVTNQRSLGFAIAAKLKEAGAE-VALSYQ   42 (256)
T ss_dssp             CTTCEEEEESCCCSSSHHHHHHHHHHHTTCE-EEEEES
T ss_pred             CCCCEEEEECCCCCchHHHHHHHHHHHCCCE-EEEEeC
Confidence            688999999975   6999999999999986 777664

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=85.62  E-value=0.6  Score=38.79  Aligned_cols=37  Identities=16%  Similarity=0.206  Sum_probs=33.1

Q ss_pred             HHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565           28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (324)
Q Consensus        28 ~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d   64 (324)
                      .|+.++|+|=|.|-+|..+++.|...|..-+.+-|.+
T Consensus        33 ~l~g~~v~IQGfGnVG~~~a~~L~e~GakvvavsD~~   69 (255)
T d1bgva1          33 TLVGKTVALAGFGNVAWGAAKKLAELGAKAVTLSGPD   69 (255)
T ss_dssp             CSTTCEEEECCSSHHHHHHHHHHHHHTCEEEEEEETT
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCC
Confidence            4788999999999999999999999998877777763

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.42  E-value=0.32  Score=37.68  Aligned_cols=38  Identities=8%  Similarity=0.100  Sum_probs=33.5

Q ss_pred             HhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccc
Q 020565           29 LSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVT   67 (324)
Q Consensus        29 l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~   67 (324)
                      |..++|+|+|.|-+|..+|+.|...|.. ++++|.|.+.
T Consensus        22 l~Gk~v~V~GyG~iG~g~A~~~rg~G~~-V~v~e~dp~~   59 (163)
T d1li4a1          22 IAGKVAVVAGYGDVGKGCAQALRGFGAR-VIITEIDPIN   59 (163)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCE-EEEECSCHHH
T ss_pred             ecCCEEEEeccccccHHHHHHHHhCCCe-eEeeecccch
Confidence            6778999999999999999999999976 8888887644

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=85.29  E-value=0.23  Score=42.75  Aligned_cols=55  Identities=15%  Similarity=0.130  Sum_probs=32.9

Q ss_pred             CCHHHHHHhHHHHHhhhHHHHHHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565            6 LTEQETALYDRQIRVWGADAQRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus         6 l~~~e~~ry~Rqi~l~g~~~q~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      +++.+...|+..+.-......  =.-.+|||+|.|+ |..+...|...++.++++||-
T Consensus        55 ~~~~de~~Yhe~l~h~~l~~~--~~pk~VLiiG~G~-G~~~~~ll~~~~~~~v~~VEi  109 (312)
T d1uira_          55 STERDEYIYHETLVHPAMLTH--PEPKRVLIVGGGE-GATLREVLKHPTVEKAVMVDI  109 (312)
T ss_dssp             EETTTHHHHHHHHHHHHHHHS--SCCCEEEEEECTT-SHHHHHHTTSTTCCEEEEEES
T ss_pred             eccccHHHHHHHHhhhhhhhC--CCcceEEEeCCCc-hHHHHHHHhcCCcceEEEecC
Confidence            344445567765543332222  1356899999984 544444444457889999876

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=84.75  E-value=0.44  Score=38.25  Aligned_cols=30  Identities=10%  Similarity=0.100  Sum_probs=27.4

Q ss_pred             cEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565           33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        33 ~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      -|+|||.|+.|...|..|++.|. +++|+|.
T Consensus         8 DviIIG~GPaGlsaA~~aa~~G~-~V~viE~   37 (229)
T d1ojta1           8 DVVVLGGGPGGYSAAFAAADEGL-KVAIVER   37 (229)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-CEEEEES
T ss_pred             CEEEECcCHHHHHHHHHHHHCCC-eEEEEec
Confidence            48999999999999999999998 5888875

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=84.74  E-value=0.32  Score=40.82  Aligned_cols=34  Identities=18%  Similarity=0.237  Sum_probs=29.6

Q ss_pred             HhcCcEEEEcCc---hhHHHHHHHHHHhCCCcEEEEcC
Q 020565           29 LSKSHILVCGMK---GTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        29 l~~~~VliiG~g---~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      |++++++|.|++   |+|.++|+.|+..|.. +.+.+.
T Consensus         6 L~gK~alVTGass~~GIG~aiA~~la~~Ga~-Vvi~~~   42 (297)
T d1d7oa_           6 LRGKRAFIAGIADDNGYGWAVAKSLAAAGAE-ILVGTW   42 (297)
T ss_dssp             CTTCEEEEECCSSSSSHHHHHHHHHHHTTCE-EEEEEE
T ss_pred             CCCCEEEEECCCCCchHHHHHHHHHHHCCCE-EEEEeC
Confidence            788999999985   7999999999999987 667653

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=84.73  E-value=0.4  Score=38.83  Aligned_cols=34  Identities=15%  Similarity=0.044  Sum_probs=29.2

Q ss_pred             CcEEEEcCchhHHHHHHHHHHhCCC--cEEEEcCCc
Q 020565           32 SHILVCGMKGTVAEFCKNIVLAGVG--SLTLMDDRV   65 (324)
Q Consensus        32 ~~VliiG~g~lGsei~k~L~~~Gv~--~i~lvD~d~   65 (324)
                      +||+|||.|+.|...|...+++|.+  +++++|.+.
T Consensus         2 ~~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk~~   37 (233)
T d1xdia1           2 TRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG   37 (233)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC
T ss_pred             cEEEEECCCHHHHHHHHHHHHcCCCCCEEEEEecCC
Confidence            4799999999999999999999986  577888643

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=84.60  E-value=0.53  Score=38.94  Aligned_cols=35  Identities=31%  Similarity=0.411  Sum_probs=30.7

Q ss_pred             HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCC
Q 020565           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDR   64 (324)
Q Consensus        29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d   64 (324)
                      |+.++++|.|. +|+|.++|+.|+..|.. +.+.|.+
T Consensus         3 L~gK~alVTGas~GIG~aia~~la~~Ga~-V~~~~r~   38 (254)
T d1hdca_           3 LSGKTVIITGGARGLGAEAARQAVAAGAR-VVLADVL   38 (254)
T ss_dssp             CCCSEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESC
T ss_pred             CCCCEEEEeCcCCHHHHHHHHHHHHCCCE-EEEEECC
Confidence            67889999996 58999999999999986 8888763

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=84.35  E-value=0.36  Score=41.32  Aligned_cols=32  Identities=16%  Similarity=0.314  Sum_probs=28.2

Q ss_pred             CcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (324)
Q Consensus        32 ~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d   64 (324)
                      .-|+|||.|.-|+-+|+.|+.+|.+ +.+++..
T Consensus         5 yDviIVGsG~aG~v~A~~La~~G~k-VlvLEaG   36 (379)
T d2f5va1           5 YDVVIVGSGPIGCTYARELVGAGYK-VAMFDIG   36 (379)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCE-EEEECSS
T ss_pred             ccEEEECcCHHHHHHHHHHhhCCCe-EEEEecC
Confidence            3589999999999999999999985 8888764

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.29  E-value=0.72  Score=38.91  Aligned_cols=36  Identities=8%  Similarity=0.230  Sum_probs=30.2

Q ss_pred             HHhcCcEEEEcCchhHHHHHHHHHH--hCCCcEEEEcCC
Q 020565           28 RLSKSHILVCGMKGTVAEFCKNIVL--AGVGSLTLMDDR   64 (324)
Q Consensus        28 ~l~~~~VliiG~g~lGsei~k~L~~--~Gv~~i~lvD~d   64 (324)
                      .-.++.|+|||+|..|...|..|++  .|.. ++++|..
T Consensus        47 ~~~~~~~~~~g~g~~g~~~a~~~~~~~~~~~-~~~~~~~   84 (311)
T d2gjca1          47 KFAVSDVIIVGAGSSGLSAAYVIAKNRPDLK-VCIIESS   84 (311)
T ss_dssp             HTTEESEEEECCSHHHHHHHHHHHHHCTTSC-EEEECSS
T ss_pred             cccCCCEEEECCCHHHHHHHHHHHHhCCCCe-EEEEEcC
Confidence            3456789999999999999999995  4766 8999874

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=84.03  E-value=0.49  Score=33.48  Aligned_cols=32  Identities=9%  Similarity=0.239  Sum_probs=27.3

Q ss_pred             HHHhcCcEEEEcCchhHHHHHHHHHHhCCCcE
Q 020565           27 RRLSKSHILVCGMKGTVAEFCKNIVLAGVGSL   58 (324)
Q Consensus        27 ~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i   58 (324)
                      ..+++++|+|||.|..|..+|..|+..+-..+
T Consensus        28 ~~f~gK~VlVVG~g~Sa~dia~~l~~~ak~v~   59 (107)
T d2gv8a2          28 ELFVGESVLVVGGASSANDLVRHLTPVAKHPI   59 (107)
T ss_dssp             GGGTTCCEEEECSSHHHHHHHHHHTTTSCSSE
T ss_pred             hhcCCCeEEEECCCCCHHHHHHHHHHhcCEEE
Confidence            45899999999999999999999987765433

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=83.89  E-value=0.56  Score=36.99  Aligned_cols=33  Identities=15%  Similarity=0.109  Sum_probs=28.9

Q ss_pred             cCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d   64 (324)
                      +.-|+|||.|+.|...|..+++.|.+ +.++|..
T Consensus         3 kYDviIIGgGpAGl~aA~~aar~G~~-V~viE~~   35 (229)
T d3lada1           3 KFDVIVIGAGPGGYVAAIKSAQLGLK-TALIEKY   35 (229)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHHTCC-EEEEECC
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCe-EEEEecc
Confidence            44599999999999999999999976 8888864

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=83.85  E-value=1  Score=34.85  Aligned_cols=37  Identities=16%  Similarity=-0.012  Sum_probs=26.4

Q ss_pred             chhhcCCccEEEEcCCCHHHHHHHHHHHHhccCCccEEEe
Q 020565          117 DGEFYDKFDVVVVSCCSVTTKKLINEKCRKLSKRVAFYTV  156 (324)
Q Consensus       117 ~~~~~~~~diVi~~~~~~~~~~~l~~~~~~~~~~ip~i~~  156 (324)
                      ..+.+++.|+||.|+..+.++....... +  .++..|..
T Consensus        73 ~~~~~~~vDvViEcTG~f~~~~~~~~hl-~--~G~k~Vi~  109 (172)
T d2czca2          73 LNDLLEKVDIIVDATPGGIGAKNKPLYE-K--AGVKAIFQ  109 (172)
T ss_dssp             HHHHHTTCSEEEECCSTTHHHHHHHHHH-H--HTCEEEEC
T ss_pred             hhhhhccCCEEEECCCCCCCHHHHHHHH-H--cCCCEEEE
Confidence            3555679999999999988887776554 3  35555543

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=83.80  E-value=0.41  Score=38.40  Aligned_cols=32  Identities=9%  Similarity=0.037  Sum_probs=28.1

Q ss_pred             cEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCc
Q 020565           33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRV   65 (324)
Q Consensus        33 ~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~   65 (324)
                      -|+|||+|+.|...|.++++.|-+ +.|+|...
T Consensus         5 DviVIG~GpaGl~aA~~aa~~G~k-V~viE~~~   36 (235)
T d1h6va1           5 DLIIIGGGSGGLAAAKEAAKFDKK-VMVLDFVT   36 (235)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGCCC-EEEECCCC
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCe-EEEEeccC
Confidence            489999999999999999999987 88887533

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=83.75  E-value=0.43  Score=41.11  Aligned_cols=31  Identities=19%  Similarity=0.092  Sum_probs=27.8

Q ss_pred             cEEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565           33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (324)
Q Consensus        33 ~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d   64 (324)
                      -|+|||.|.-|+-+|..|+.+|.+ +.+++..
T Consensus         4 ~VIVVGsG~aG~v~A~rLaeaG~~-VlvLEaG   34 (367)
T d1n4wa1           4 PAVVIGTGYGAAVSALRLGEAGVQ-TLMLEMG   34 (367)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCC-EEEEESS
T ss_pred             eEEEeCcCHHHHHHHHHHHHCcCe-EEEEecC
Confidence            389999999999999999999985 8888874

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=83.71  E-value=0.52  Score=33.87  Aligned_cols=38  Identities=13%  Similarity=0.124  Sum_probs=32.1

Q ss_pred             cCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccc
Q 020565           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEE   69 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~   69 (324)
                      ..||.|+|.|-+|--++..-.+.|+. +.++|++.-.+.
T Consensus        11 ~~kigIlGgGQL~rMla~aA~~lG~~-v~v~d~~~~~PA   48 (111)
T d1kjqa2          11 ATRVMLLGSGELGKEVAIECQRLGVE-VIAVDRYADAPA   48 (111)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHTTTCE-EEEEESSTTCGG
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHCCCE-EEEEcCCCCCch
Confidence            46799999999999999999999997 788888654443

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=83.61  E-value=0.44  Score=40.43  Aligned_cols=37  Identities=8%  Similarity=0.084  Sum_probs=32.1

Q ss_pred             HHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565           28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (324)
Q Consensus        28 ~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d   64 (324)
                      .|+.++|+|-|.|.+|..+|+.|...|.+-+.+-|.+
T Consensus        33 ~L~gktvaIqGfGnVG~~~A~~L~e~Gakvv~vsD~~   69 (293)
T d1hwxa1          33 GFGDKTFAVQGFGNVGLHSMRYLHRFGAKCVAVGESD   69 (293)
T ss_dssp             SSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEEETT
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEccc
Confidence            3678999999999999999999999998766666664

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=83.52  E-value=0.22  Score=37.94  Aligned_cols=27  Identities=11%  Similarity=0.182  Sum_probs=24.6

Q ss_pred             cCcEEEEcCchhHHHHHHHHHHhCCCc
Q 020565           31 KSHILVCGMKGTVAEFCKNIVLAGVGS   57 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~~~Gv~~   57 (324)
                      ..||+|||.|.+|+++|..+++.|...
T Consensus        29 gkrVvVIGgG~~g~d~a~~~~r~G~~~   55 (162)
T d1ps9a2          29 GNKVAIIGCGGIGFDTAMYLSQPGEST   55 (162)
T ss_dssp             CSEEEEECCHHHHHHHHHHHTCCSSCG
T ss_pred             CCceEEEcCchhHHHHHHHHHHcCCcc
Confidence            468999999999999999999999764

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=83.50  E-value=0.37  Score=38.48  Aligned_cols=36  Identities=11%  Similarity=0.109  Sum_probs=30.7

Q ss_pred             HHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565           28 RLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        28 ~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      .++.++|+|||+|..|..+|..|+..+....++.-.
T Consensus        29 ~~~gK~V~VvG~G~Sa~dia~~~~~~~~~~~~~~~~   64 (235)
T d1w4xa2          29 DFSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRT   64 (235)
T ss_dssp             CCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESS
T ss_pred             CCCCCEEEEECCCccHHHHHHHHHhhhccccccccc
Confidence            378899999999999999999999999876555433

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=83.31  E-value=0.58  Score=38.42  Aligned_cols=33  Identities=9%  Similarity=0.136  Sum_probs=29.2

Q ss_pred             cEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCcc
Q 020565           33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVV   66 (324)
Q Consensus        33 ~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v   66 (324)
                      -|+|||.|+.|...|..+++.|.+ +.|+|.+.+
T Consensus         3 DviVIG~G~aG~~aA~~aa~~G~~-V~liE~~~~   35 (259)
T d1onfa1           3 DLIVIGGGSGGMAAARRAARHNAK-VALVEKSRL   35 (259)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCC-EEEEESSST
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCe-EEEEecCCC
Confidence            379999999999999999999985 999997644

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.07  E-value=0.48  Score=38.87  Aligned_cols=34  Identities=24%  Similarity=0.301  Sum_probs=29.5

Q ss_pred             HhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           29 LSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        29 l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      |+.++++|.|. +|+|.++++.|+..|.. +.++|.
T Consensus         3 l~GK~alITGas~GIG~aia~~la~~Ga~-V~~~~r   37 (242)
T d1cyda_           3 FSGLRALVTGAGKGIGRDTVKALHASGAK-VVAVTR   37 (242)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEEC
Confidence            57789999996 68999999999999975 888765

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=83.02  E-value=0.45  Score=39.19  Aligned_cols=36  Identities=22%  Similarity=0.290  Sum_probs=30.8

Q ss_pred             HHhcCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCC
Q 020565           28 RLSKSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDR   64 (324)
Q Consensus        28 ~l~~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d   64 (324)
                      +|+.+.++|-|. +|+|.++++.|+..|.. +.+.|.+
T Consensus         2 ~l~GK~alITGas~GIG~aia~~la~~G~~-V~~~~~~   38 (248)
T d2d1ya1           2 LFAGKGVLVTGGARGIGRAIAQAFAREGAL-VALCDLR   38 (248)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESS
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEECC
Confidence            478889999995 78999999999999975 8888753

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=82.94  E-value=0.56  Score=41.21  Aligned_cols=34  Identities=6%  Similarity=0.182  Sum_probs=29.7

Q ss_pred             cCcEEEEcCchhHHHHHHHHHH------hCCCcEEEEcCCc
Q 020565           31 KSHILVCGMKGTVAEFCKNIVL------AGVGSLTLMDDRV   65 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~~------~Gv~~i~lvD~d~   65 (324)
                      +.-|+|||.|+.|+..|..|++      .|++ +.|+|...
T Consensus        32 e~DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~-VlllEK~~   71 (380)
T d2gmha1          32 EADVVIVGAGPAGLSAATRLKQLAAQHEKDLR-VCLVEKAA   71 (380)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHHHTTCCCC-EEEECSSS
T ss_pred             cCCEEEECCCHHHHHHHHHHHhhhhhhcCCCE-EEEEcCCC
Confidence            4679999999999999999998      7886 88988743

>d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: ADP-L-glycero-D-mannoheptose 6-epimerase
species: Escherichia coli [TaxId: 562]

Probab=82.85  E-value=0.48  Score=39.19  Aligned_cols=30  Identities=23%  Similarity=0.424  Sum_probs=26.7

Q ss_pred             EEEEcCch-hHHHHHHHHHHhCCCcEEEEcC
Q 020565           34 ILVCGMKG-TVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        34 VliiG~g~-lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      |||.|..| +|+.+++.|...|...++.+|+
T Consensus         2 ILITGgsGfIGs~lv~~L~~~g~~~V~~~d~   32 (307)
T d1eq2a_           2 IIVTGGAGFIGSNIVKALNDKGITDILVVDN   32 (307)
T ss_dssp             EEEETTTSHHHHHHHHHHHTTTCCCEEEEEC
T ss_pred             EEEecCccHHHHHHHHHHHhCCCCeEEEEEC
Confidence            78999765 9999999999999888999874

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=82.38  E-value=0.6  Score=39.52  Aligned_cols=35  Identities=14%  Similarity=0.261  Sum_probs=30.8

Q ss_pred             cCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCcc
Q 020565           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVV   66 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v   66 (324)
                      ..-|+|||.|..|...|..|+..|.+ ++|++....
T Consensus        23 t~DVvVIG~G~aGl~aA~~la~~G~~-V~llEk~~~   57 (322)
T d1d4ca2          23 TTDVVIIGSGGAGLAAAVSARDAGAK-VILLEKEPI   57 (322)
T ss_dssp             ECSEEEECSSHHHHHHHHHHHTTTCC-EEEECSSSS
T ss_pred             cceEEEECcCHHHHHHHHHHHHCCCc-EEEEeCCCC
Confidence            35699999999999999999999986 999987654

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=82.37  E-value=2.1  Score=34.77  Aligned_cols=57  Identities=19%  Similarity=0.282  Sum_probs=36.9

Q ss_pred             EEEEcC-chhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEeeCC
Q 020565           34 ILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVEKGD  112 (324)
Q Consensus        34 VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~~~~  112 (324)
                      |+|-|. +|+|.++++.|+..|.. +.+.|..                     ...+.+.+++.+++...  ++..+..+
T Consensus         4 ~lITGas~GIG~a~a~~la~~Ga~-V~i~~~~---------------------~~~~~~~~~~~~~~~g~--~~~~~~~D   59 (244)
T d1edoa_           4 VVVTGASRGIGKAIALSLGKAGCK-VLVNYAR---------------------SAKAAEEVSKQIEAYGG--QAITFGGD   59 (244)
T ss_dssp             EEETTCSSHHHHHHHHHHHHTTCE-EEEEESS---------------------CHHHHHHHHHHHHHHTC--EEEEEECC
T ss_pred             EEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCC---------------------CHHHHHHHHHHHHHcCC--cEEEEeCC
Confidence            455574 78999999999999986 6665531                     33356666677766553  34444444


Q ss_pred             CC
Q 020565          113 LS  114 (324)
Q Consensus       113 ~~  114 (324)
                      +.
T Consensus        60 v~   61 (244)
T d1edoa_          60 VS   61 (244)
T ss_dssp             TT
T ss_pred             CC
Confidence            43

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=82.28  E-value=0.46  Score=38.57  Aligned_cols=34  Identities=12%  Similarity=0.085  Sum_probs=29.1

Q ss_pred             cCcEEEEcC-chhHHHHHHHHHHhCCCcEEEEcCCc
Q 020565           31 KSHILVCGM-KGTVAEFCKNIVLAGVGSLTLMDDRV   65 (324)
Q Consensus        31 ~~~VliiG~-g~lGsei~k~L~~~Gv~~i~lvD~d~   65 (324)
                      +.||+|.|+ +|+|.++++.|+..|.. +.++|.+.
T Consensus         2 ~gkVlITGas~GIG~aia~~l~~~G~~-V~~~~~~~   36 (235)
T d1ooea_           2 SGKVIVYGGKGALGSAILEFFKKNGYT-VLNIDLSA   36 (235)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTEE-EEEEESSC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEECCc
Confidence            458999996 78999999999999975 88888754

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=82.25  E-value=0.62  Score=35.06  Aligned_cols=35  Identities=9%  Similarity=0.145  Sum_probs=28.8

Q ss_pred             HhcCcEEEE--cCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565           29 LSKSHILVC--GMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (324)
Q Consensus        29 l~~~~Vlii--G~g~lGsei~k~L~~~Gv~~i~lvD~d   64 (324)
                      .-.++|+|+  |.|-+|+|+|..|+..|. ++|++...
T Consensus        37 ~~~~~vvi~d~ggg~ig~e~A~~la~~G~-~Vtlv~~~   73 (156)
T d1djqa2          37 KIGKRVVILNADTYFMAPSLAEKLATAGH-EVTIVSGV   73 (156)
T ss_dssp             CCCSEEEEEECCCSSHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             ccCCceEEEecCCChHHHHHHHHHHHcCC-eEEEEecC
Confidence            345567776  888899999999999997 59999874

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=81.73  E-value=0.6  Score=40.22  Aligned_cols=31  Identities=19%  Similarity=0.115  Sum_probs=27.7

Q ss_pred             cEEEEcCchhHHHHHHHHHHhCCCcEEEEcCC
Q 020565           33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDR   64 (324)
Q Consensus        33 ~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d   64 (324)
                      -|+|||.|.-|+.+|..|+.+|.+ +++++..
T Consensus         9 dvIVVGsG~aG~v~A~rLaeaG~~-VlvLEaG   39 (370)
T d3coxa1           9 PALVIGSGYGGAVAALRLTQAGIP-TQIVEMG   39 (370)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCC-EEEECSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCe-EEEEeCC
Confidence            489999999999999999999975 8888863

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=81.40  E-value=4.8  Score=31.59  Aligned_cols=90  Identities=14%  Similarity=0.235  Sum_probs=56.4

Q ss_pred             hcCcEEEEcCchhHHH---HHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeE
Q 020565           30 SKSHILVCGMKGTVAE---FCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRV  106 (324)
Q Consensus        30 ~~~~VliiG~g~lGse---i~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v  106 (324)
                      .+++||=+||| .|..   +++.+...|. +++-+|.                      ...-.+.+.+++.+.++...+
T Consensus        39 ~~~~vLDlGCG-tG~~~~~l~~~~~~~~~-~v~giD~----------------------S~~ml~~A~~~~~~~~~~~~~   94 (225)
T d1im8a_          39 ADSNVYDLGCS-RGAATLSARRNINQPNV-KIIGIDN----------------------SQPMVERCRQHIAAYHSEIPV   94 (225)
T ss_dssp             TTCEEEEESCT-TCHHHHHHHHTCCCSSC-EEEEECS----------------------CHHHHHHHHHHHHTSCCSSCE
T ss_pred             CCCEEEEeccc-hhhHHHHHHHhhcCCCC-ceEEeCC----------------------CHHHHHHHHHHhHhhcccchh
Confidence            46689999996 3433   3333323343 5888877                      555667888888988888888


Q ss_pred             eEeeCCCCCCchhhcCCccEEEEcCC----CHH-HHHHHHHHHHh
Q 020565          107 SVEKGDLSSLDGEFYDKFDVVVVSCC----SVT-TKKLINEKCRK  146 (324)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~diVi~~~~----~~~-~~~~l~~~~~~  146 (324)
                      +....+..+.   ....+|+|++...    +.+ ....+.++.+.
T Consensus        95 ~~~~~d~~~~---~~~~~d~i~~~~~l~~~~~~d~~~~l~~i~~~  136 (225)
T d1im8a_          95 EILCNDIRHV---EIKNASMVILNFTLQFLPPEDRIALLTKIYEG  136 (225)
T ss_dssp             EEECSCTTTC---CCCSEEEEEEESCGGGSCGGGHHHHHHHHHHH
T ss_pred             hhccchhhcc---ccccceeeEEeeeccccChhhHHHHHHHHHHh
Confidence            8776654432   2346788776543    322 33456666655

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=81.25  E-value=0.54  Score=39.85  Aligned_cols=40  Identities=13%  Similarity=-0.027  Sum_probs=33.9

Q ss_pred             hcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCcccccc
Q 020565           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEA   70 (324)
Q Consensus        30 ~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~n   70 (324)
                      +..-|+|||.|..|...|..+++.|.+ ++|++...+.-.+
T Consensus         4 ~~~DVvVIG~G~AGl~AAl~aa~~G~~-V~liEK~~~~~g~   43 (336)
T d2bs2a2           4 QYCDSLVIGGGLAGLRAAVATQQKGLS-TIVLSLIPVKRSH   43 (336)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHTTTCC-EEEECSSCGGGSG
T ss_pred             eecCEEEECcCHHHHHHHHHHHHCCCC-EEEEecCCCCCCc
Confidence            345699999999999999999999986 9999987765443

>d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Erythromycin synthase, eryAI, 1st ketoreductase module
species: Saccharopolyspora erythraea [TaxId: 1836]

Probab=81.06  E-value=0.7  Score=37.88  Aligned_cols=31  Identities=23%  Similarity=0.372  Sum_probs=27.2

Q ss_pred             cCcEEEEc-CchhHHHHHHHHHHhCCCcEEEE
Q 020565           31 KSHILVCG-MKGTVAEFCKNIVLAGVGSLTLM   61 (324)
Q Consensus        31 ~~~VliiG-~g~lGsei~k~L~~~Gv~~i~lv   61 (324)
                      +..|+|.| .||+|.++++.|+..|..++.++
T Consensus         9 ~gt~lVTGgs~GIG~a~a~~la~~Ga~~vvl~   40 (259)
T d2fr1a1           9 TGTVLVTGGTGGVGGQIARWLARRGAPHLLLV   40 (259)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHHTCSEEEEE
T ss_pred             cCEEEEECCCcHHHHHHHHHHHHCCCCEEEEE
Confidence            45789999 58999999999999999888875

>d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Biliverdin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=80.88  E-value=1.3  Score=33.93  Aligned_cols=32  Identities=13%  Similarity=0.082  Sum_probs=23.8

Q ss_pred             CcEEEEcCchhHHHHHHHHHHhC-CCcEEEEcC
Q 020565           32 SHILVCGMKGTVAEFCKNIVLAG-VGSLTLMDD   63 (324)
Q Consensus        32 ~~VliiG~g~lGsei~k~L~~~G-v~~i~lvD~   63 (324)
                      -+|.|||+|..|..-+++|...+ +..+.++|.
T Consensus         8 ~kv~iIG~G~~g~~h~~~l~~~~~~~~~~~~~~   40 (172)
T d1lc0a1           8 FGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGF   40 (172)
T ss_dssp             EEEEEECCSHHHHHHHHHHTSHHHHTTEEEEEE
T ss_pred             cEEEEEcCCHHHHHHHHHHHhCCCCcEEEEEec
Confidence            46899999999999888887653 344566553

>d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=80.77  E-value=5.1  Score=29.00  Aligned_cols=35  Identities=23%  Similarity=0.143  Sum_probs=29.1

Q ss_pred             HhcCcEEEEcC----chhHHHHHHHHHHhCCCcEEEEcC
Q 020565           29 LSKSHILVCGM----KGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        29 l~~~~VliiG~----g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      ++-++|.|||+    +..|..+++||...|-+++..|-+
T Consensus         6 f~PksIAVVGaS~~~~~~g~~v~~~L~~~~~g~v~pVnP   44 (129)
T d2csua1           6 FNPKGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNI   44 (129)
T ss_dssp             TSCSEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECS
T ss_pred             CCCCeEEEEccCCCCCCcHHHHHHHHHHcCCCcEEEecc
Confidence            45688999996    678999999998777678888866

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.75  E-value=0.66  Score=37.02  Aligned_cols=36  Identities=11%  Similarity=0.135  Sum_probs=30.3

Q ss_pred             cCcEEEEcCchhHHHHHHHHHHhCCC-cEEEEcCCcc
Q 020565           31 KSHILVCGMKGTVAEFCKNIVLAGVG-SLTLMDDRVV   66 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~~~Gv~-~i~lvD~d~v   66 (324)
                      ..+++|||.|..|.++|..|...|.. +|++++.+..
T Consensus         4 ~~~~vIvG~G~aG~~~A~~Lr~~~~~~~I~li~~e~~   40 (213)
T d1m6ia1           4 HVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPE   40 (213)
T ss_dssp             EEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSS
T ss_pred             CCCEEEECCcHHHHHHHHHHHhcCCCCcEEEEeCCCC
Confidence            34689999999999999999998874 8999987543

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=80.60  E-value=0.71  Score=35.47  Aligned_cols=31  Identities=10%  Similarity=-0.119  Sum_probs=24.5

Q ss_pred             hcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcC
Q 020565           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDD   63 (324)
Q Consensus        30 ~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~   63 (324)
                      ..++||.+||| .|. .+..|+..|.. ++-+|.
T Consensus        20 ~~~rvLd~GCG-~G~-~a~~la~~G~~-V~gvD~   50 (201)
T d1pjza_          20 PGARVLVPLCG-KSQ-DMSWLSGQGYH-VVGAEL   50 (201)
T ss_dssp             TTCEEEETTTC-CSH-HHHHHHHHCCE-EEEEEE
T ss_pred             CCCEEEEecCc-CCH-HHHHHHHcCCc-eEeecc
Confidence            67899999998 575 56688889974 777776

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=80.47  E-value=2.7  Score=32.73  Aligned_cols=89  Identities=16%  Similarity=0.100  Sum_probs=54.6

Q ss_pred             hcCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccccccCCCCcccCCCCcccCCccHHHHHHHHHHhhCCCCeEeEe
Q 020565           30 SKSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVTEEAWSANFLIPPDENVYGGKTIAEVCCDSLKDFNPMVRVSVE  109 (324)
Q Consensus        30 ~~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~~~nl~r~~l~~~~di~~~G~~ka~~~~~~l~~lnp~v~v~~~  109 (324)
                      ++.+||=||||. |. .+..|+..|. +++-+|.                      ...-.+.+++++...++.+..  .
T Consensus        37 ~~~~ILDiGcG~-G~-~~~~la~~~~-~v~giD~----------------------S~~~i~~ak~~~~~~~~~~~~--~   89 (226)
T d1ve3a1          37 KRGKVLDLACGV-GG-FSFLLEDYGF-EVVGVDI----------------------SEDMIRKAREYAKSRESNVEF--I   89 (226)
T ss_dssp             SCCEEEEETCTT-SH-HHHHHHHTTC-EEEEEES----------------------CHHHHHHHHHHHHHTTCCCEE--E
T ss_pred             CCCEEEEECCCc-ch-hhhhHhhhhc-ccccccc----------------------cccchhhhhhhhccccccccc--c
Confidence            357899999984 55 5568888886 5888775                      444556777888887766543  3


Q ss_pred             eCCCCCCchhhcCCccEEEEcCC----C-HHHHHHHHHHHHh
Q 020565          110 KGDLSSLDGEFYDKFDVVVVSCC----S-VTTKKLINEKCRK  146 (324)
Q Consensus       110 ~~~~~~~~~~~~~~~diVi~~~~----~-~~~~~~l~~~~~~  146 (324)
                      ..+..... .--..||+|++...    + .+....+.++.+.
T Consensus        90 ~~d~~~l~-~~~~~fD~I~~~~~l~~~~~~d~~~~l~~i~~~  130 (226)
T d1ve3a1          90 VGDARKLS-FEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRV  130 (226)
T ss_dssp             ECCTTSCC-SCTTCEEEEEEESCGGGCCHHHHHHHHHHHHHH
T ss_pred             cccccccc-ccCcCceEEEEecchhhCChhHHHHHHHHHHHH
Confidence            33333221 11146899887643    1 1333456666655

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=80.42  E-value=0.71  Score=37.69  Aligned_cols=29  Identities=24%  Similarity=0.139  Sum_probs=25.9

Q ss_pred             CcEEEEcCchhHHHHHHHHHHhCCCcEEE
Q 020565           32 SHILVCGMKGTVAEFCKNIVLAGVGSLTL   60 (324)
Q Consensus        32 ~~VliiG~g~lGsei~k~L~~~Gv~~i~l   60 (324)
                      .-|+|||.|..|++.|-..+++|.+.+.|
T Consensus         3 YDVIVIGgG~AG~eAA~~aAR~G~ktlli   31 (230)
T d2cula1           3 YQVLIVGAGFSGAETAFWLAQKGVRVGLL   31 (230)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred             CcEEEECcCHHHHHHHHHHHHCCCcEEEE
Confidence            45999999999999999999999996544

>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class I ketol-acid reductoisomerase (KARI)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=80.33  E-value=1.1  Score=34.79  Aligned_cols=34  Identities=15%  Similarity=0.195  Sum_probs=30.7

Q ss_pred             HHHHhcCcEEEEcCchhHHHHHHHHHHhCCCcEEE
Q 020565           26 QRRLSKSHILVCGMKGTVAEFCKNIVLAGVGSLTL   60 (324)
Q Consensus        26 q~~l~~~~VliiG~g~lGsei~k~L~~~Gv~~i~l   60 (324)
                      ...|++++|.|||.|+-|-.=|.||--+|+. +++
T Consensus        11 l~~ik~k~IaViGYGsQG~AhAlNLrDSG~~-V~V   44 (182)
T d1np3a2          11 LSIIQGKKVAIIGYGSQGHAHACNLKDSGVD-VTV   44 (182)
T ss_dssp             HHHHHTSCEEEECCSHHHHHHHHHHHHTTCC-EEE
T ss_pred             hHHHCCCEEEEEeeCcHhHHHHhhhhhcCCC-EEE
Confidence            3678999999999999999999999999994 655

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=80.26  E-value=0.86  Score=38.48  Aligned_cols=34  Identities=21%  Similarity=0.240  Sum_probs=30.2

Q ss_pred             cEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCccc
Q 020565           33 HILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVVT   67 (324)
Q Consensus        33 ~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v~   67 (324)
                      -|+|||.|..|...|..+++.|.+ +.|++...+.
T Consensus        21 DVvVIGaG~aGl~AA~~aa~~G~~-V~vlEK~~~~   54 (317)
T d1qo8a2          21 QVLVVGAGSAGFNASLAAKKAGAN-VILVDKAPFS   54 (317)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCC-EEEECSSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCc-EEEEeCCCCC
Confidence            399999999999999999999975 9999886554

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=80.08  E-value=0.68  Score=37.25  Aligned_cols=36  Identities=14%  Similarity=0.012  Sum_probs=31.3

Q ss_pred             cCcEEEEcCchhHHHHHHHHHHhCCCcEEEEcCCcc
Q 020565           31 KSHILVCGMKGTVAEFCKNIVLAGVGSLTLMDDRVV   66 (324)
Q Consensus        31 ~~~VliiG~g~lGsei~k~L~~~Gv~~i~lvD~d~v   66 (324)
                      +.-|+|||.|+-|...|..+++.|-+++.|+|....
T Consensus         3 ~YDvvVIG~GpAG~~aAi~aa~~g~k~V~vie~~~~   38 (240)
T d1feca1           3 AYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKH   38 (240)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSS
T ss_pred             ccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEEecc
Confidence            345899999999999999999999988999987554