Citrus Sinensis ID: 020573
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 324 | 2.2.26 [Sep-21-2011] | |||||||
| Q8DHV7 | 291 | Release factor glutamine | yes | no | 0.746 | 0.831 | 0.374 | 6e-41 | |
| P74003 | 299 | Release factor glutamine | N/A | no | 0.679 | 0.735 | 0.415 | 1e-38 | |
| Q7NJS7 | 286 | Release factor glutamine | yes | no | 0.651 | 0.737 | 0.426 | 3e-37 | |
| Q2RFW1 | 283 | Release factor glutamine | yes | no | 0.546 | 0.625 | 0.398 | 1e-25 | |
| Q748B2 | 284 | Release factor glutamine | yes | no | 0.530 | 0.605 | 0.382 | 9e-24 | |
| A9WBM9 | 283 | Release factor glutamine | yes | no | 0.533 | 0.611 | 0.417 | 7e-23 | |
| Q97F67 | 285 | Release factor glutamine | yes | no | 0.533 | 0.607 | 0.353 | 6e-21 | |
| Q9K4E3 | 281 | Release factor glutamine | yes | no | 0.533 | 0.615 | 0.377 | 8e-20 | |
| Q7VDL7 | 293 | Release factor glutamine | yes | no | 0.561 | 0.621 | 0.380 | 4e-19 | |
| Q9A9T7 | 289 | Release factor glutamine | yes | no | 0.537 | 0.602 | 0.372 | 5e-19 |
| >sp|Q8DHV7|PRMC_THEEB Release factor glutamine methyltransferase OS=Thermosynechococcus elongatus (strain BP-1) GN=prmC PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 168 bits (425), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 97/259 (37%), Positives = 140/259 (54%), Gaps = 17/259 (6%)
Query: 66 LKKWHNWAKALASSVRSTFADSDNGPDSSILFRELNWLVEDSLEDPSLIPQLGFQNNSQS 125
L++W +WA+ + + P+ REL + L ++ +
Sbjct: 6 LQRWWHWAQGIIPA-----------PERESGLRELKQFLRAFTGLSPL--EITLRRFPPQ 52
Query: 126 VRLRIGLDELYGLWKQRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSD 185
+ L++ L EL W++R ++R P QYL+G HW DL L V V IPRPETE +L++
Sbjct: 53 IHLKLPLTELQERWQRRWQERVPLQYLIGVAHWHDLELVVTPSVLIPRPETE---ELLAV 109
Query: 186 VLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGL 245
V + G W+DLGTGSGAIAIG+AR+ + I AVD + A VA N Q+Y L
Sbjct: 110 VAATVPPWQQQGHWLDLGTGSGAIAIGLARLFPA-ALIHAVDCSSEALEVAQVNIQKYAL 168
Query: 246 QDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGL 305
D + G+WF + ++G++ G+VSNPPYIP+ ++ LQ EV HEP LALDGG DGL
Sbjct: 169 GDRVRCYVGNWFDPIVPLQGQVQGIVSNPPYIPTSVVATLQPEVQYHEPLLALDGGTDGL 228
Query: 306 DYLLHLCNGTASMLKPDKW 324
+ + L+P W
Sbjct: 229 QAIRQILETAPEYLQPQGW 247
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Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif. Thermosynechococcus elongatus (strain BP-1) (taxid: 197221) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: nEC: 1EC: 6 |
| >sp|P74003|PRMC_SYNY3 Release factor glutamine methyltransferase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=prmC PE=3 SV=1 | Back alignment and function description |
|---|
Score = 160 bits (404), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 93/224 (41%), Positives = 134/224 (59%), Gaps = 4/224 (1%)
Query: 99 ELNWLVEDSLEDPSLIPQLGFQNNSQ-SVRLRIGLDELYGLWKQRIEKRKPFQYLVGCEH 157
ELNWL++ + L L Q+ + + L+ + + W++R+E++ P QYL+G
Sbjct: 31 ELNWLLQGWTDLDRLT--LRLQDFAHREIALQETWENIQRGWRRRVEEKYPVQYLLGQTQ 88
Query: 158 WRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVL 217
WRD V+ V + V IPRPETEL++D+V + WVDLGTGSGAIA+G+A
Sbjct: 89 WRDFVIKVTDDVLIPRPETELIIDIVQHEHSALSPSNCADHWVDLGTGSGAIALGLAATF 148
Query: 218 GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYI 277
+ + AVD + A A+A NAQ D I+ QG W+ L+ ++G++ G+VSNPPYI
Sbjct: 149 -PQALVHAVDCSGSALAIARENAQLNQFGDRIQFHQGYWWEPLEHLKGQVQGMVSNPPYI 207
Query: 278 PSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKP 321
P +++ LQ EV KHEP LALDGG DGL + L + + LKP
Sbjct: 208 PQRELAQLQPEVIKHEPLLALDGGPDGLQAVEQLIRRSPTYLKP 251
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Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif. Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: n EC: 1 EC: 6 |
| >sp|Q7NJS7|PRMC_GLOVI Release factor glutamine methyltransferase OS=Gloeobacter violaceus (strain PCC 7421) GN=prmC PE=3 SV=1 | Back alignment and function description |
|---|
Score = 155 bits (393), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 95/223 (42%), Positives = 128/223 (57%), Gaps = 12/223 (5%)
Query: 99 ELNWLVEDSLEDPSLIPQLGFQNNSQSVRLRIGLDELYGLWKQRIEKRKPFQYLVGCEHW 158
E+++L+E L +LG ++ R ++L LW++RIE+ P QYL+G HW
Sbjct: 25 EIDYLIEAVTGLDRLRVRLGGPQALEAHR-----EKLAALWRRRIEEAMPLQYLLGTAHW 79
Query: 159 RDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLG 218
RDL L V V IPRPE+E +VD+ D R G R VDLGTGSGAIA+ +AR L
Sbjct: 80 RDLQLQVNPAVLIPRPESEALVDVAVD-FCRSCAGARV---VDLGTGSGAIAVAVARAL- 134
Query: 219 SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIP 278
++ AVD + A VA N +RYGL + + + +G+WF L V+SNPPYIP
Sbjct: 135 PGATVWAVDASEAALVVAGANIERYGLSEQVHLLRGNWFVPLPT--QPFDAVLSNPPYIP 192
Query: 279 SDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKP 321
S +I+ L EV HEP ALDGG DGLD + + A L+P
Sbjct: 193 SAEIAALMPEVRLHEPLSALDGGSDGLDAVRQIIADAARHLRP 235
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Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif. Gloeobacter violaceus (strain PCC 7421) (taxid: 251221) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: n EC: 1 EC: 6 |
| >sp|Q2RFW1|PRMC_MOOTA Release factor glutamine methyltransferase OS=Moorella thermoacetica (strain ATCC 39073) GN=prmC PE=3 SV=1 | Back alignment and function description |
|---|
Score = 117 bits (293), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 75/188 (39%), Positives = 106/188 (56%), Gaps = 11/188 (5%)
Query: 137 GLWKQRIEKRK---PFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDG 193
G + Q I++R P QYL G + + L V V IPR +TE++V+ V + L D
Sbjct: 55 GRFWQAIDRRAAGYPLQYLTGHQEFMSLDFKVTPAVLIPRQDTEVVVEAVLERL----DP 110
Query: 194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQ 253
D GTGSGAIA+ +A L + + A D++P A VA NA++ GL + + Q
Sbjct: 111 CESYTIADCGTGSGAIALSLAHYL-PRARVYATDISPAALTVAQENARKLGLAARVTLLQ 169
Query: 254 GSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCN 313
G + L+ + KL +V+NPPYIP+ + GL +V + EPRLALDGG DGLD L
Sbjct: 170 GDFLAPLRGL--KLDALVANPPYIPTAALPGLPADV-RSEPRLALDGGPDGLDAYRFLLP 226
Query: 314 GTASMLKP 321
G A +L+P
Sbjct: 227 GAAGLLRP 234
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Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif. Moorella thermoacetica (strain ATCC 39073) (taxid: 264732) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: n EC: 1 EC: 6 |
| >sp|Q748B2|PRMC_GEOSL Release factor glutamine methyltransferase OS=Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA) GN=prmC PE=3 SV=1 | Back alignment and function description |
|---|
Score = 111 bits (277), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 70/183 (38%), Positives = 103/183 (56%), Gaps = 11/183 (6%)
Query: 142 RIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVD 201
R KR+P QY++G + + L V V IPR +TE++V+ + L R +D
Sbjct: 70 RRAKREPLQYILGTQEFCGLDFVVTPSVLIPRHDTEVIVE---EALRRAPHA---AAVLD 123
Query: 202 LGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK 261
+G GSG IA+ +A+ L ++ V+ +P A A+A NA+R+G + + + +GS F L
Sbjct: 124 IGVGSGCIAVALAKQL-PHAQVVGVEQSPGAIALAQRNAERHGAR--VTLFEGSLFEPLG 180
Query: 262 DVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKP 321
D L +VSNPPYIP+ D+ LQ EV ++EPR ALDGG DGLD+ + L P
Sbjct: 181 DQRFDL--IVSNPPYIPTADLEALQPEVREYEPRAALDGGSDGLDFYRLIVPAAPEYLNP 238
Query: 322 DKW 324
W
Sbjct: 239 GGW 241
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Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif. Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA) (taxid: 243231) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: n EC: 1 EC: 6 |
| >sp|A9WBM9|PRMC_CHLAA Release factor glutamine methyltransferase OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=prmC PE=3 SV=1 | Back alignment and function description |
|---|
Score = 108 bits (269), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 76/182 (41%), Positives = 95/182 (52%), Gaps = 9/182 (4%)
Query: 141 QRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWV 200
+R R+P YL+G + L L V+ V IPRPETEL+V+L R N
Sbjct: 61 ERRANREPVAYLIGHREFFGLDLFVDRRVLIPRPETELLVELTLKEAQRFNHT--PLIIA 118
Query: 201 DLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKL 260
D+GTGSGAIAI +A L I VD++P A AVAA N RY L D I + +G L
Sbjct: 119 DIGTGSGAIAIALAMHL-PHALIYGVDISPDALAVAAINVTRYRLDDRIRLLEGDLCTPL 177
Query: 261 KDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLK 320
+ +VSNPPY +I V +HEP LALDGG DGLD L + LK
Sbjct: 178 P---APVDILVSNPPYTILTEIDE---GVYRHEPHLALDGGSDGLDCYRRLIAAAPTYLK 231
Query: 321 PD 322
P+
Sbjct: 232 PN 233
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Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif. Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) (taxid: 324602) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: n EC: 1 EC: 6 |
| >sp|Q97F67|PRMC_CLOAB Release factor glutamine methyltransferase OS=Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) GN=prmC PE=3 SV=1 | Back alignment and function description |
|---|
Score = 101 bits (252), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 63/178 (35%), Positives = 97/178 (54%), Gaps = 5/178 (2%)
Query: 144 EKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLG 203
+K+ P +Y+ + L VE+GV IPRP+TE++V+ V + + +N D+
Sbjct: 65 KKKMPIRYITEKCEFMGLDFHVEKGVLIPRPDTEILVEAVLEYIELNNYKK----VCDVC 120
Query: 204 TGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDV 263
TGSGAI + IA+ ++ D++P A V+ N Q L+D ++I G K +
Sbjct: 121 TGSGAIGLSIAK-YAKDVEVLCSDISPDAIRVSKINRQGLNLEDRVKIENGDLLEKPIER 179
Query: 264 EGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKP 321
K VVSNPPYI D+I L +V +EP +AL GG DGLD+ + + + +LKP
Sbjct: 180 GEKFDIVVSNPPYIREDEIPKLMDDVKDYEPIIALVGGEDGLDFYRRITSMSKKVLKP 237
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Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif. Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) (taxid: 272562) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: n EC: 1 EC: 6 |
| >sp|Q9K4E3|PRMC_STRCO Release factor glutamine methyltransferase OS=Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145) GN=prmC PE=3 SV=1 | Back alignment and function description |
|---|
Score = 98.2 bits (243), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 68/180 (37%), Positives = 98/180 (54%), Gaps = 7/180 (3%)
Query: 142 RIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVD 201
R E R+P Q++ G ++R L L V GVF+PRPETE +V D VR D + VD
Sbjct: 60 RREAREPLQHITGRAYFRYLELQVGPGVFVPRPETESVVGWAIDA-VRAMDVVEPCI-VD 117
Query: 202 LGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK 261
L TGSGAIA+ +A+ + + + AV+L+ A N + +++RQG
Sbjct: 118 LCTGSGAIALALAQEV-PRSRVHAVELSEDALKWTRRNME----GSRVDLRQGDALTAFP 172
Query: 262 DVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKP 321
D++G++ VVSNPPYIP + + E H+P LAL G DGLD + L +L+P
Sbjct: 173 DLDGQVDLVVSNPPYIPLTEWEYVAPEARDHDPELALFSGEDGLDLIRGLERTAHRLLRP 232
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Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif. Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145) (taxid: 100226) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: n EC: 1 EC: 6 |
| >sp|Q7VDL7|PRMC_PROMA Release factor glutamine methyltransferase OS=Prochlorococcus marinus (strain SARG / CCMP1375 / SS120) GN=prmC PE=3 SV=1 | Back alignment and function description |
|---|
Score = 95.5 bits (236), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 72/189 (38%), Positives = 97/189 (51%), Gaps = 7/189 (3%)
Query: 138 LWKQRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGL-RD 196
+W + + + P Q+LVG WRD L V IPR ETE+++D+ L + + GL +
Sbjct: 67 IWMRHLSDQIPLQHLVGKCPWRDFELKVNSSALIPRQETEILIDIA---LKKVDAGLMKY 123
Query: 197 GFWVDLGTGSGAIAIGIARVLGS-KGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGS 255
G W DLGTGSGA+A+ +AR L +G A D A A+A N + + G
Sbjct: 124 GRWADLGTGSGALAVALARALPLWEGH--AADCCNDALALAESNINTLTENANVSLHLGD 181
Query: 256 WFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGT 315
W+ LK G VV+NPPYIP +S L V HEP LAL GG DG+D + G
Sbjct: 182 WWEPLKPWWGNFDLVVANPPYIPKTHLSELDPVVRDHEPILALSGGDDGMDSCRKVIKGA 241
Query: 316 ASMLKPDKW 324
L+ W
Sbjct: 242 MKGLRSGGW 250
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Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif. Prochlorococcus marinus (strain SARG / CCMP1375 / SS120) (taxid: 167539) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: n EC: 1 EC: 6 |
| >sp|Q9A9T7|PRMC_CAUCR Release factor glutamine methyltransferase OS=Caulobacter crescentus (strain ATCC 19089 / CB15) GN=prmC PE=3 SV=2 | Back alignment and function description |
|---|
Score = 95.1 bits (235), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 69/185 (37%), Positives = 95/185 (51%), Gaps = 11/185 (5%)
Query: 139 WKQRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGF 198
+ +R +R+P +++G + + ++L V + V PRPETE++VD V F
Sbjct: 62 YLERRARREPVSHIIGRKGFWKILLQVNKNVLTPRPETEVIVDEVLKAFPEHM-----AF 116
Query: 199 -WVDLGTGSGAIAIGI-ARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSW 256
+DLG GSG I + + A +KG + +D + A AVA NA L + G W
Sbjct: 117 SMLDLGVGSGTILLAVLAERPAAKG--LGIDASSEALAVARENAANLDLNTRAALLHGDW 174
Query: 257 FGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTA 316
L L VVSNPPYIP++ I L+ EV HEPRLALDGG DGL L
Sbjct: 175 TTGLGSDSFDL--VVSNPPYIPTEVIDTLEPEVRIHEPRLALDGGPDGLAAYRELAPEIL 232
Query: 317 SMLKP 321
+LKP
Sbjct: 233 RVLKP 237
|
Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif. Caulobacter crescentus (strain ATCC 19089 / CB15) (taxid: 190650) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: n EC: 1 EC: 6 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 324 | ||||||
| 255566573 | 354 | n6-DNA-methyltransferase, putative [Rici | 0.854 | 0.782 | 0.683 | 1e-110 | |
| 224073134 | 360 | predicted protein [Populus trichocarpa] | 0.854 | 0.769 | 0.673 | 1e-108 | |
| 449466616 | 360 | PREDICTED: release factor glutamine meth | 0.895 | 0.805 | 0.622 | 1e-108 | |
| 363807000 | 364 | uncharacterized protein LOC100796269 [Gl | 0.969 | 0.862 | 0.619 | 1e-106 | |
| 356525752 | 361 | PREDICTED: protein methyltransferase hem | 0.956 | 0.858 | 0.624 | 1e-106 | |
| 225462209 | 356 | PREDICTED: protein methyltransferase hem | 0.944 | 0.859 | 0.619 | 1e-104 | |
| 297797429 | 365 | methylase family protein [Arabidopsis ly | 0.879 | 0.780 | 0.615 | 9e-99 | |
| 15237618 | 377 | RNA methyltransferase family protein [Ar | 0.882 | 0.758 | 0.606 | 5e-98 | |
| 358348140 | 403 | Protein hemK [Medicago truncatula] gi|35 | 0.839 | 0.674 | 0.575 | 8e-98 | |
| 21553723 | 377 | unknown [Arabidopsis thaliana] | 0.882 | 0.758 | 0.596 | 7e-96 |
| >gi|255566573|ref|XP_002524271.1| n6-DNA-methyltransferase, putative [Ricinus communis] gi|223536462|gb|EEF38110.1| n6-DNA-methyltransferase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust.
Identities = 190/278 (68%), Positives = 231/278 (83%), Gaps = 1/278 (0%)
Query: 44 STPKPKTPLFLKPPKYSATLSDLKKWHNWAKALASSVRSTFADSDNGPDSSILFRELNWL 103
S+ K + PLFL+PP YS +LS+L KW WAK LASSV S+F + DNGPDS++L REL WL
Sbjct: 28 SSLKIQNPLFLRPPVYSTSLSELNKWQQWAKHLASSVGSSFVNLDNGPDSTLLCRELKWL 87
Query: 104 VEDSLEDPSLIPQLGFQNNSQSVRLRIGLDELYGLWKQRIEKRKPFQYLVGCEHWRDLVL 163
+EDSLED SLIPQL QNN ++V+LR LDELY LW+QRIE+RKPFQY+VGCEHWRD VL
Sbjct: 88 IEDSLEDHSLIPQLCIQNNFRNVKLRASLDELYSLWRQRIEERKPFQYIVGCEHWRDFVL 147
Query: 164 SVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSI 223
SV+EGV IPRPETEL++DLV V +N+ L +G W DLGTGSGA+AIGIA++LG +G +
Sbjct: 148 SVQEGVLIPRPETELIIDLVKGA-VLNNEELSEGLWADLGTGSGALAIGIAKILGPQGRV 206
Query: 224 IAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDIS 283
IA DL+P+AA+VA +N QRY LQ ++E+R+GSWF L DVEGKL+GVVSNPPYIPSDDIS
Sbjct: 207 IATDLSPVAASVATYNVQRYDLQGMVEVRKGSWFEPLNDVEGKLAGVVSNPPYIPSDDIS 266
Query: 284 GLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKP 321
GLQ EVG+HEPR+ALDGG+ G+D LLHL NG AS+LKP
Sbjct: 267 GLQAEVGRHEPRIALDGGISGMDDLLHLTNGAASILKP 304
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224073134|ref|XP_002303988.1| predicted protein [Populus trichocarpa] gi|222841420|gb|EEE78967.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 396 bits (1018), Expect = e-108, Method: Compositional matrix adjust.
Identities = 192/285 (67%), Positives = 228/285 (80%), Gaps = 8/285 (2%)
Query: 44 STPKPKTPLFLKPPKYSATLSDLKKWHNWAKALASSVRSTFADSDNGPDSSILFRELNWL 103
+T KPK PLFL+PP YS T SDL+KWH WAK LASSV S+F +SDNGPDS++L RELNWL
Sbjct: 27 TTIKPKIPLFLRPPTYSVTSSDLQKWHGWAKGLASSVGSSFVESDNGPDSTLLCRELNWL 86
Query: 104 VEDSLED-------PSLIPQLGFQNNSQSVRLRIGLDELYGLWKQRIEKRKPFQYLVGCE 156
+EDSLE+ + + ++V LRI LD+LY LWKQRIE+R+PFQY+VGCE
Sbjct: 87 LEDSLENRSSSSCFSFAACKYDTFDGIENVMLRISLDDLYQLWKQRIEERRPFQYIVGCE 146
Query: 157 HWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARV 216
HWRDLVLSV+EGV IPRPETEL+VDLVSD V +N L G W D+GTGSGAIAIGI+++
Sbjct: 147 HWRDLVLSVQEGVLIPRPETELIVDLVSDA-VSNNQELGQGLWADVGTGSGAIAIGISKI 205
Query: 217 LGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPY 276
L S G +IA DL+P+A +VA FN QRYGLQ + E+RQGSWF LKDVEG+L G+VSNPPY
Sbjct: 206 LRSYGRVIATDLSPVAVSVAMFNVQRYGLQHVTEVRQGSWFEPLKDVEGQLVGIVSNPPY 265
Query: 277 IPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKP 321
IPSD+ISGLQ EVG+HEPRLALDGG G+DYLLHLCNG A+MLKP
Sbjct: 266 IPSDNISGLQAEVGRHEPRLALDGGASGIDYLLHLCNGAAAMLKP 310
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449466616|ref|XP_004151022.1| PREDICTED: release factor glutamine methyltransferase-like [Cucumis sativus] gi|449526004|ref|XP_004170005.1| PREDICTED: release factor glutamine methyltransferase-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 396 bits (1017), Expect = e-108, Method: Compositional matrix adjust.
Identities = 190/305 (62%), Positives = 234/305 (76%), Gaps = 15/305 (4%)
Query: 26 RAILNQPFSSSSSSSSHSSTPKPKTPLFLKPPKYSATLSDLKKWHNWAKALASSVRSTFA 85
RA L P + S SS+ P+ PLFL+PP YS TL D KWHNWAK L SV S+F
Sbjct: 7 RAYLVAPHRAKSIRPICSSSLNPQIPLFLRPPNYSVTLKDFHKWHNWAKILNCSVGSSFV 66
Query: 86 DSDNGPDSSILFRELNWLVEDSLEDPSLI----------PQLGFQNNSQSVRLRIGLDEL 135
D+DNGPDS++L REL WLV+D++ED SL P+LG +N VRL++G++EL
Sbjct: 67 DTDNGPDSTLLHRELKWLVQDAVEDKSLSSELENEIEQNPELGLRN----VRLKVGIEEL 122
Query: 136 YGLWKQRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLR 195
Y LWKQRI +R+PFQY+VGCEHWRDL+LSVEEGV IPRPETE++VDLV V V DN+ LR
Sbjct: 123 YRLWKQRIHERRPFQYIVGCEHWRDLILSVEEGVLIPRPETEVLVDLVEKV-VSDNEALR 181
Query: 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGS 255
+G WVDLGTGSGAIAIGI R+L +G +IA DL+ +A AVA +N QRYGLQD+IE+RQGS
Sbjct: 182 EGLWVDLGTGSGAIAIGICRILEGRGRVIATDLSSIALAVAGYNVQRYGLQDLIELRQGS 241
Query: 256 WFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGT 315
W+ L+DV+GKLSG++SNPPYIPSD+I GLQ EVGKHEPR+ALDGG +G+D L+HLC+
Sbjct: 242 WYEPLQDVQGKLSGIISNPPYIPSDNIFGLQAEVGKHEPRVALDGGTNGMDELIHLCDEA 301
Query: 316 ASMLK 320
MLK
Sbjct: 302 TVMLK 306
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|363807000|ref|NP_001242318.1| uncharacterized protein LOC100796269 [Glycine max] gi|255645193|gb|ACU23094.1| unknown [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 392 bits (1007), Expect = e-106, Method: Compositional matrix adjust.
Identities = 199/321 (61%), Positives = 250/321 (77%), Gaps = 7/321 (2%)
Query: 1 MRVSLTRACRFYTSPITPKPSFFSPRAILNQPFSSSSSSSSHSSTPKPKTPLFLKPPKYS 60
MR++L+ R Y+ P K S FS L +PF SS SSS + KP+ PLFL+ P YS
Sbjct: 1 MRLTLSSVYRPYSFPTLLKSSSFS---TLCRPFCSSVLSSSPTCV-KPQVPLFLRQPIYS 56
Query: 61 ATLSDLKKWHNWAKALASSVRSTFADSDNGPDSSILFRELNWLVEDSLEDPSLIPQLGFQ 120
L +LKKWH+WAK +A S+ STF DSDNGPDSS+L REL WL+ED++ED S+I +
Sbjct: 57 TKLCELKKWHDWAKGVAFSIGSTFVDSDNGPDSSLLCRELKWLMEDAVEDHSMI--VKDD 114
Query: 121 NNSQSVRLRIGLDELYGLWKQRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMV 180
++ + V++R+G++ELY LWKQR+++R+PFQY+VGCEHWRDLVLSV+EGV IPRPETEL+V
Sbjct: 115 DSDERVKMRVGIEELYCLWKQRVQERRPFQYVVGCEHWRDLVLSVQEGVLIPRPETELLV 174
Query: 181 DLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNA 240
D V DV V +N+ L+ G W DLGTGSGA+AIGI VLGS+G +IA DL+P+A AVAA+N
Sbjct: 175 DFVDDV-VSENEDLKRGVWADLGTGSGALAIGIGGVLGSEGRVIATDLSPVAVAVAAYNV 233
Query: 241 QRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDG 300
Q Y QD IE+R+GSWF LKD+EG L+G+VSNPPYIPS DISGLQ EVG+HEPR+ALDG
Sbjct: 234 QGYCFQDKIELREGSWFEPLKDMEGMLAGLVSNPPYIPSKDISGLQAEVGRHEPRVALDG 293
Query: 301 GVDGLDYLLHLCNGTASMLKP 321
G DG+D LLHLC+G A MLKP
Sbjct: 294 GTDGMDALLHLCDGAALMLKP 314
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356525752|ref|XP_003531487.1| PREDICTED: protein methyltransferase hemK homolog [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 390 bits (1001), Expect = e-106, Method: Compositional matrix adjust.
Identities = 201/322 (62%), Positives = 248/322 (77%), Gaps = 12/322 (3%)
Query: 1 MRVSLTRACRFYTSPITPKPSFFSPRAILNQPFSSSSSSSSHSSTPKPKTPLFLKPPKYS 60
M ++L+ R Y+ P K S FS L++PF SS+ SS + KP+ PLFL+PP YS
Sbjct: 1 MNLTLSSVYRPYSFPTLLKSSSFS---TLSRPFCSSALSSPPTCV-KPQVPLFLRPPIYS 56
Query: 61 ATLSDLKKWHNWAKALASSVRSTFADSDNGPDSSILFRELNWLVEDSLEDPSLIPQLGFQ 120
L +LKKWH+WAK +A S+ STF SDNG DSSILFRE+ WL+ED++ED S+I
Sbjct: 57 TKLCELKKWHDWAKGVAFSIGSTFVHSDNGRDSSILFREMKWLMEDAVEDHSMIV----- 111
Query: 121 NNSQSVRLRIGLDELYGLWKQRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMV 180
+ + V++RIG+DELY LWKQRI +R+PFQY+VGCEHWRDLVLSV+EGV IPRPETEL+V
Sbjct: 112 -DDERVKMRIGIDELYCLWKQRIHERRPFQYVVGCEHWRDLVLSVQEGVLIPRPETELIV 170
Query: 181 DLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGS-IIAVDLNPLAAAVAAFN 239
D V DV V +N+ L+ G W DLGTGSGA+AIGI RVL S+G ++A DL+P+A AVAA+N
Sbjct: 171 DFVYDV-VSENEDLKSGVWADLGTGSGALAIGIGRVLRSEGGRVVATDLSPVAVAVAAYN 229
Query: 240 AQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALD 299
QRY LQD IE+R+GSWF LKD+EGKL G+VSNPPYIPS DISGLQ EVG+HEPR+ALD
Sbjct: 230 VQRYCLQDKIELREGSWFEPLKDMEGKLVGLVSNPPYIPSKDISGLQAEVGRHEPRVALD 289
Query: 300 GGVDGLDYLLHLCNGTASMLKP 321
GG DG+D LLHLC+G MLKP
Sbjct: 290 GGTDGMDALLHLCDGAGLMLKP 311
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225462209|ref|XP_002269180.1| PREDICTED: protein methyltransferase hemK homolog [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 385 bits (989), Expect = e-104, Method: Compositional matrix adjust.
Identities = 199/321 (61%), Positives = 246/321 (76%), Gaps = 15/321 (4%)
Query: 1 MRVSLTRACRFYTSPITPKPSFFSPRAILNQPFSSSSSSSSHSSTPKPKTPLFLKPPKYS 60
M++S+ RAC ++ +P S L++P S SS S S KP+ PLFL+PP +S
Sbjct: 1 MKLSIPRACGSWSK--SPPVS-----TTLHKPISFYSSIPSSSPL-KPQVPLFLRPPIHS 52
Query: 61 ATLSDLKKWHNWAKALASSVRSTFADSDNGPDSSILFRELNWLVEDSLEDPSLIPQLGFQ 120
ATLSDL+KWH+WAK L SD+ PD ++L REL WL+ED+LE S +PQ+G
Sbjct: 53 ATLSDLQKWHHWAKTLP------VPHSDDPPDPTLLRRELKWLLEDALEVHSSVPQMGSH 106
Query: 121 NNSQSVRLRIGLDELYGLWKQRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMV 180
++ + ++LR L++LY +W+QRIE+R+PFQY+VGCEHWRDLVLSV++GV IPRPETE+ V
Sbjct: 107 SDDRPIKLRTSLEQLYSVWRQRIEERRPFQYVVGCEHWRDLVLSVQDGVLIPRPETEVFV 166
Query: 181 DLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNA 240
DLV DV+ ++ D L G W DLGTGSGAIAIGI R+LG +G +IA DL+P+A +VA+FN
Sbjct: 167 DLVGDVVTQNGD-LTQGLWADLGTGSGAIAIGIGRILGPRGRVIATDLSPVAVSVASFNV 225
Query: 241 QRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDG 300
QRY LQDIIEIRQGSWF LKDVEGKLSG+VSNPPYIPSD ISGLQ EVG HEPRLALDG
Sbjct: 226 QRYSLQDIIEIRQGSWFEPLKDVEGKLSGLVSNPPYIPSDHISGLQPEVGWHEPRLALDG 285
Query: 301 GVDGLDYLLHLCNGTASMLKP 321
GVDG+D LLHLCNG ASMLKP
Sbjct: 286 GVDGIDALLHLCNGAASMLKP 306
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297797429|ref|XP_002866599.1| methylase family protein [Arabidopsis lyrata subsp. lyrata] gi|297312434|gb|EFH42858.1| methylase family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 366 bits (939), Expect = 9e-99, Method: Compositional matrix adjust.
Identities = 178/289 (61%), Positives = 228/289 (78%), Gaps = 4/289 (1%)
Query: 35 SSSSSSSHSSTPKPKTPLFLKPPKYSATLSDLKKWHNWAKALASSVRSTFADSDNGPDSS 94
+ SS+ ++S + PKTPLFL+ P ++ +LS++ KWH+WAK LASSV + +S++ DS
Sbjct: 26 AKSSTETNSLSITPKTPLFLRTPSHATSLSEVWKWHDWAKDLASSVEESSTNSEDVLDSV 85
Query: 95 ILFRELNWLVEDSL-EDPSLIPQLG--FQNNSQSVRLRIGLDELYGLWKQRIEKRKPFQY 151
IL REL WL+EDS+ +DP +I N ++V+LR L+ELY LW+QRIEKR+PFQY
Sbjct: 86 ILHRELKWLIEDSIVDDPLVILHRSEIADNGEKNVKLRASLEELYDLWRQRIEKRRPFQY 145
Query: 152 LVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAI 211
+VGCE+WRDLVL VEEGV IPRPETEL+VD+V +++ RD + + GFW DLGTGSGAIAI
Sbjct: 146 VVGCEYWRDLVLCVEEGVLIPRPETELIVDMVEELVTRD-EWFKKGFWADLGTGSGAIAI 204
Query: 212 GIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVV 271
GIA+VLGS+G +IA DL+P+A AVA N QRYGL+ +IE+R+GSWF LK +EGKL G+V
Sbjct: 205 GIAKVLGSRGRVIATDLSPVAVAVAGKNVQRYGLEGMIEVREGSWFEPLKGLEGKLVGLV 264
Query: 272 SNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLK 320
SNPPYIPSDDI GLQ EVGKHEP+LALDGG+DG D LLHLC G + ML+
Sbjct: 265 SNPPYIPSDDIPGLQAEVGKHEPKLALDGGIDGTDSLLHLCYGASQMLQ 313
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15237618|ref|NP_201220.1| RNA methyltransferase family protein [Arabidopsis thaliana] gi|10176963|dbj|BAB10283.1| unnamed protein product [Arabidopsis thaliana] gi|15451004|gb|AAK96773.1| Unknown protein [Arabidopsis thaliana] gi|30725624|gb|AAP37834.1| At5g64156 [Arabidopsis thaliana] gi|332010464|gb|AED97847.1| RNA methyltransferase family protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 363 bits (933), Expect = 5e-98, Method: Compositional matrix adjust.
Identities = 176/290 (60%), Positives = 225/290 (77%), Gaps = 4/290 (1%)
Query: 35 SSSSSSSHSSTPKPKTPLFLKPPKYSATLSDLKKWHNWAKALASSVRSTFADSDNGPDSS 94
S SS + S + PKTPL+L+ P ++ +LS++ KWH+WAK LASSV + +S++ DS
Sbjct: 38 SKSSRPTKSLSITPKTPLYLRTPSHATSLSEVWKWHDWAKDLASSVEESSKNSEDTLDSV 97
Query: 95 ILFRELNWLVEDSL-EDPSLIPQLG--FQNNSQSVRLRIGLDELYGLWKQRIEKRKPFQY 151
IL REL WL+EDS+ +DP +I N ++V+LR L+ELY LW+QRIEKR+PFQY
Sbjct: 98 ILHRELKWLIEDSIVDDPLVILHRSEIADNGEKNVKLRASLEELYDLWRQRIEKRRPFQY 157
Query: 152 LVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAI 211
+VGCEHWRDLVL VEEGV IPRPETEL+VD+V +++ RD + + W DLGTGSGAIAI
Sbjct: 158 VVGCEHWRDLVLCVEEGVLIPRPETELIVDMVEELVTRD-EWFKKDIWADLGTGSGAIAI 216
Query: 212 GIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVV 271
GIA+VLGS+G +IA DL+P+A AVA N QRY L+ +IE+R+GSWF LKD+EGKL G+V
Sbjct: 217 GIAKVLGSRGRVIATDLSPVAIAVAGHNVQRYSLEGMIEVREGSWFEPLKDLEGKLVGLV 276
Query: 272 SNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKP 321
SNPPYIPSDDI GLQ EVG+HEP+LALDGG+DG D L HLC+G + ML+P
Sbjct: 277 SNPPYIPSDDIPGLQAEVGRHEPKLALDGGIDGTDSLFHLCHGASRMLQP 326
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|358348140|ref|XP_003638107.1| Protein hemK [Medicago truncatula] gi|355504042|gb|AES85245.1| Protein hemK [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 363 bits (931), Expect = 8e-98, Method: Compositional matrix adjust.
Identities = 182/316 (57%), Positives = 224/316 (70%), Gaps = 44/316 (13%)
Query: 47 KPKTPLFLKPPKYSATLSDLKKWHNWAKALASSVRSTFADSDNGPDSSILFRELNWLVED 106
KP+ P+FL+PP YS L+DLKKWHNWAK +A S+ S+F SDNGPDS+IL REL W +ED
Sbjct: 41 KPQVPIFLRPPIYSTKLNDLKKWHNWAKNIAFSIGSSFVQSDNGPDSTILCRELKWFIED 100
Query: 107 SLEDP-SLIPQLGFQNNSQSVRLRIGLDELYGLWKQRIEKRKPFQYLVGCEHWRDLVLSV 165
+E+ SL Q+G ++++ V++R ++ELY LWKQRIE+RKPFQY+VGCEHW+DLVLSV
Sbjct: 101 VVENHHSLFSQVG--DDNEKVKMRADIEELYCLWKQRIEERKPFQYIVGCEHWKDLVLSV 158
Query: 166 EEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIA 225
+EGV IPRPETEL+VDLVSDV V N+GL+ G W DLGTGSGA+AIGI RVLG G +I
Sbjct: 159 QEGVLIPRPETELIVDLVSDV-VSKNEGLKRGVWADLGTGSGALAIGIGRVLGDGGKVIG 217
Query: 226 VDLNPLAAAVAAFNAQRYG----------------------------------------L 245
DL+P+A AVA +N QRY L
Sbjct: 218 SDLSPVAVAVAGYNVQRYSLQVRNSSFQLPWFTFSFIVQSKLYMSILYLETCSTYVNHHL 277
Query: 246 QDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGL 305
QD IE+R+GSW LKD+EGKL+G+VSNPPYIPS +I LQ EVGKHEPR+ALDGG+DG+
Sbjct: 278 QDKIELREGSWLEPLKDMEGKLAGLVSNPPYIPSKEIPVLQAEVGKHEPRVALDGGIDGM 337
Query: 306 DYLLHLCNGTASMLKP 321
D LLHLC+G MLKP
Sbjct: 338 DALLHLCDGADLMLKP 353
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|21553723|gb|AAM62816.1| unknown [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 356 bits (914), Expect = 7e-96, Method: Compositional matrix adjust.
Identities = 173/290 (59%), Positives = 223/290 (76%), Gaps = 4/290 (1%)
Query: 35 SSSSSSSHSSTPKPKTPLFLKPPKYSATLSDLKKWHNWAKALASSVRSTFADSDNGPDSS 94
S SS + S + PKTPL+L+ P ++ +LS++ KWH+WAK LASSV + +S++ DS
Sbjct: 38 SKSSRPTKSLSITPKTPLYLRTPSHATSLSEVWKWHDWAKDLASSVEESSKNSEDTLDSV 97
Query: 95 ILFRELNWLVEDSL-EDPSLIPQLG--FQNNSQSVRLRIGLDELYGLWKQRIEKRKPFQY 151
IL REL WL+EDS+ +DP +I N ++V+LR L+ELY LW+QRIEKR+PF Y
Sbjct: 98 ILHRELKWLIEDSIVDDPLVILHRSEIADNGKKNVKLRASLEELYDLWRQRIEKRRPFHY 157
Query: 152 LVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAI 211
+VGCEHWRDLVL VEEGV IPRPETEL+VD+V +++ RD + + G +LGTGSGAIAI
Sbjct: 158 VVGCEHWRDLVLCVEEGVLIPRPETELIVDMVEELVTRD-EWFKKGILANLGTGSGAIAI 216
Query: 212 GIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVV 271
GIA+VLGS+G +IA DL+P+A AVA N RY L+ +IE+R+GSWF LKD+EGKL G+V
Sbjct: 217 GIAKVLGSRGRVIATDLSPVAIAVAGHNVHRYSLEGMIEVREGSWFEPLKDLEGKLVGLV 276
Query: 272 SNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKP 321
SNPPYIPSDDI GLQ EVG+HEP+LALDGG+DG D L HLC+G + ML+P
Sbjct: 277 SNPPYIPSDDIPGLQAEVGRHEPKLALDGGIDGTDSLFHLCHGASRMLQP 326
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 324 | ||||||
| TAIR|locus:2164396 | 377 | AT5G64150 [Arabidopsis thalian | 0.808 | 0.694 | 0.503 | 1e-68 | |
| ZFIN|ZDB-GENE-050208-185 | 342 | hemk1 "HemK methyltransferase | 0.481 | 0.456 | 0.324 | 2.9e-09 | |
| TIGR_CMR|GSU_3103 | 284 | GSU_3103 "modification methyla | 0.543 | 0.619 | 0.265 | 1.6e-08 | |
| UNIPROTKB|Q10602 | 304 | prmC "Release factor glutamine | 0.148 | 0.157 | 0.392 | 5.2e-07 | |
| TIGR_CMR|VC_2178 | 286 | VC_2178 "hemK protein" [Vibrio | 0.391 | 0.444 | 0.296 | 8.3e-07 | |
| TIGR_CMR|CHY_2562 | 285 | CHY_2562 "modification methyla | 0.462 | 0.526 | 0.292 | 1.1e-06 | |
| TIGR_CMR|BA_5571 | 283 | BA_5571 "modification methylas | 0.435 | 0.498 | 0.298 | 1.8e-06 | |
| UNIPROTKB|E2RK46 | 358 | HEMK1 "Uncharacterized protein | 0.469 | 0.424 | 0.296 | 1.2e-05 | |
| UNIPROTKB|Q83AD8 | 277 | prmC "Release factor glutamine | 0.444 | 0.519 | 0.288 | 1.5e-05 | |
| TIGR_CMR|CBU_1964 | 277 | CBU_1964 "protein methyltransf | 0.444 | 0.519 | 0.288 | 1.5e-05 |
| TAIR|locus:2164396 AT5G64150 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 697 (250.4 bits), Expect = 1.0e-68, P = 1.0e-68
Identities = 134/266 (50%), Positives = 176/266 (66%)
Query: 59 YSATLSDLKKWHNWAKALASSVRSTFADSDNGPDSSILFRELNWLVEDSL-EDPSLIPQL 117
++ +LS++ KWH+WAK LASSV + +S++ DS IL REL WL+EDS+ +DP +I
Sbjct: 62 HATSLSEVWKWHDWAKDLASSVEESSKNSEDTLDSVILHRELKWLIEDSIVDDPLVILHR 121
Query: 118 G--FQNNSQSVRLRIGLDELYGLWKQRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPE 175
N ++V+LR L+ELY LW+QRIEKR+PFQY+VGCEHWRDLVL VEEGV IPRPE
Sbjct: 122 SEIADNGEKNVKLRASLEELYDLWRQRIEKRRPFQYVVGCEHWRDLVLCVEEGVLIPRPE 181
Query: 176 TELMVDLVSDVLVRDNDGLRDGFWVDLGTXXXXXXXXXXRVLGSKGSIIXXXXXXXXXXX 235
TEL+VD+V +++ RD + + W DLGT +VLGS+G +I
Sbjct: 182 TELIVDMVEELVTRD-EWFKKDIWADLGTGSGAIAIGIAKVLGSRGRVIATDLSPVAIAV 240
Query: 236 XXXXXQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPR 295
QRY L+ +IE+R+GSWF LKD+EGKL G+VSNPPYIPSDDI GLQ EVG+HEP+
Sbjct: 241 AGHNVQRYSLEGMIEVREGSWFEPLKDLEGKLVGLVSNPPYIPSDDIPGLQAEVGRHEPK 300
Query: 296 XXXXXXXXXXXXXXXXCNGTASMLKP 321
C+G + ML+P
Sbjct: 301 LALDGGIDGTDSLFHLCHGASRMLQP 326
|
|
| ZFIN|ZDB-GENE-050208-185 hemk1 "HemK methyltransferase family member 1" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 157 (60.3 bits), Expect = 2.9e-09, P = 2.9e-09
Identities = 58/179 (32%), Positives = 80/179 (44%)
Query: 124 QSVRLRIGLD--ELYGLWKQRIEK--RKPFQYLVGCEHW--RDLVLSVEEGVFIPRPETE 177
Q RLR L E +WK ++ R P QY++ E W RDL L ++ VFIPRPETE
Sbjct: 90 QKKRLRDTLTDKERETVWKLCSKRLTRMPVQYVI--EEWDFRDLTLKMKPPVFIPRPETE 147
Query: 178 LMVDLVSDVLVRDNDGLRDGFW-VDLGTXXXXXXXXXXRVLGSKGSIIXXXXXXXXXXXX 236
+V LV + D + +R F +++G R L +
Sbjct: 148 ELVGLV----LEDFESIRGDFHGLEVGCGSGAISLSLLRSLPQL-RVFALDQSQDAVCLT 202
Query: 237 XXXXQRYGLQDIIEIRQGSWFGKLKDVEGKLSG------VVSNPPYIPSDDISGLQVEV 289
R GLQD +E+ +KD + LS +VSNPPYI S D+ LQ E+
Sbjct: 203 MENANRLGLQDRLEVHH---LDVVKDADVILSKCNPVDFIVSNPPYILSQDMEALQTEI 258
|
|
| TIGR_CMR|GSU_3103 GSU_3103 "modification methylase, HemK family" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 149 (57.5 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 50/188 (26%), Positives = 77/188 (40%)
Query: 137 GLWKQRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRD 196
GL +R KR+P QY++G + + L V V IPR +TE++V+ + L R
Sbjct: 66 GLVARRA-KREPLQYILGTQEFCGLDFVVTPSVLIPRHDTEVIVE---EALRRAPHAAAV 121
Query: 197 GFWVDLGTXXXXXXXXXXRVLGSKGSIIXXXXXXXXXXXXXXXXQRYGLQDIIEIRQGSW 256
+D+G + L ++ +R+G + + + +GS
Sbjct: 122 ---LDIGVGSGCIAVALAKQL-PHAQVVGVEQSPGAIALAQRNAERHGAR--VTLFEGSL 175
Query: 257 FGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRXXXXXXXXXXXXXXXXCNGTA 316
F L D L +VSNPPYIP+ D+ LQ EV ++EPR
Sbjct: 176 FEPLGDQRFDL--IVSNPPYIPTADLEALQPEVREYEPRAALDGGSDGLDFYRLIVPAAP 233
Query: 317 SMLKPDKW 324
L P W
Sbjct: 234 EYLNPGGW 241
|
|
| UNIPROTKB|Q10602 prmC "Release factor glutamine methyltransferase" [Mycobacterium tuberculosis (taxid:1773)] | Back alignment and assigned GO terms |
|---|
Score = 97 (39.2 bits), Expect = 5.2e-07, Sum P(2) = 5.2e-07
Identities = 20/51 (39%), Positives = 32/51 (62%)
Query: 133 DELYGLWKQRIE---KRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMV 180
DE +G ++ + +R P Q+L+G + +VL V GVF+PRPETE ++
Sbjct: 49 DEFFGRYRDIVTARARRVPLQHLIGTVSFGPVVLHVGPGVFVPRPETEAIL 99
|
|
| TIGR_CMR|VC_2178 VC_2178 "hemK protein" [Vibrio cholerae O1 biovar El Tor (taxid:686)] | Back alignment and assigned GO terms |
|---|
Score = 135 (52.6 bits), Expect = 8.3e-07, P = 8.3e-07
Identities = 40/135 (29%), Positives = 57/135 (42%)
Query: 147 KPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTXX 206
+P Y++G + L L V IPRP+TE +V+L D L DG +DLGT
Sbjct: 70 EPMAYILGEREFWSLPLKVSPSTLIPRPDTERLVELALD-----KAALIDGELLDLGTGT 124
Query: 207 XXXXXXXXRVLGSKGSIIXXXXXXXXXXXXXXXXQRYGLQDIIEIRQGSWFGKLKDVEGK 266
L ++ + R + + + QGSWF L D K
Sbjct: 125 GAIALALASELPTR-QVTGIDLRPEAAELARENATRLAIHNA-QFFQGSWFSPLADGT-K 181
Query: 267 LSGVVSNPPYIPSDD 281
+ +VSNPPYI +D
Sbjct: 182 FALIVSNPPYIEEND 196
|
|
| TIGR_CMR|CHY_2562 CHY_2562 "modification methylase, HemK family" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 134 (52.2 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 46/157 (29%), Positives = 67/157 (42%)
Query: 141 QRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWV 200
+R R P YL+G + + L V V IPRPETELMV+ + L R GL+
Sbjct: 64 ERRASRIPLAYLIGKKEFYGLDFFVTPEVLIPRPETELMVEEGINFL-RQYRGLK--LVA 120
Query: 201 DLGTXXXXXXXXXXRVLGSKGSIIXXXXXXXXXXXXXXXXQRYGLQDIIEIRQGSWFGKL 260
D+GT + G +G+ + + + G L
Sbjct: 121 DVGTGSGAVGVALACHI-PLGLFFLLDISEEALKVARVNAHHHGVDERVILGHGDLLEPL 179
Query: 261 K--DVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPR 295
D GK S + +N PYIP++++S L EV K EP+
Sbjct: 180 SKLDFSGKFSLITANLPYIPTEELSTLMPEVQK-EPQ 215
|
|
| TIGR_CMR|BA_5571 BA_5571 "modification methylase, HemK family" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 132 (51.5 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 45/151 (29%), Positives = 60/151 (39%)
Query: 148 PFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDG--FWVDLGTX 205
P QY++G E + V E V IPRPETE +L+ VL R D D+GT
Sbjct: 67 PIQYMIGHEMFYGRSFFVNEEVLIPRPETE---ELIVGVLERIERHFGDEKLHVADIGTG 123
Query: 206 XXXXXXXXXRVLGSKG-SIIXXXXXXXXXXXXXXXXQRYGLQDIIEIRQGSWFGKLKDVE 264
L +K + + G + + G +
Sbjct: 124 SGAISITLA--LENKNLHVYTVDIAQESIEVAKENAKTLGAE--VTFYHGDLLSPFYETG 179
Query: 265 GKLSGVVSNPPYIPSDDISGLQVEVGKHEPR 295
KL VVSNPPYIP +D GL V +HEP+
Sbjct: 180 QKLDVVVSNPPYIPEEDWRGLSPVVKEHEPK 210
|
|
| UNIPROTKB|E2RK46 HEMK1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 127 (49.8 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 49/165 (29%), Positives = 73/165 (44%)
Query: 138 LWKQRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDND--GLR 195
L +R++ R P QY++G ++ L L + VFIPRPETE +V+ V + + + G +
Sbjct: 100 LSSRRLQ-RMPVQYILGEWDFQGLSLKMAPPVFIPRPETEELVEWVLEEVAQSPCAMGTQ 158
Query: 196 DG-FWVDLGTXXXXXXXXXXRVLGSKGSIIXXXXXXXXXXXXXXXXQRYGLQDIIEI--- 251
DG +++G L + +I QR L D I I
Sbjct: 159 DGPLILEVGCGSGAISLSLLSQL-PQSRVIAVDKGEAAICLTEENAQRLRLLDRIRIVPL 217
Query: 252 ---RQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHE 293
+GSW L G + VVSNPPYI D+ L E+ +E
Sbjct: 218 DVTLEGSWAHLLP--WGPVDLVVSNPPYIFHQDMEQLAPEIRSYE 260
|
|
| UNIPROTKB|Q83AD8 prmC "Release factor glutamine methyltransferase" [Coxiella burnetii RSA 493 (taxid:227377)] | Back alignment and assigned GO terms |
|---|
Score = 124 (48.7 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 45/156 (28%), Positives = 68/156 (43%)
Query: 140 KQRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFW 199
K+R+ K +P Y++G + + L L V V IPRPETE++V+ + L +D + LR
Sbjct: 62 KRRL-KGEPIAYILGQKEFWSLNLKVTPDVLIPRPETEMLVEWILKNLPKD-EKLRIA-- 117
Query: 200 VDLGTXXXXXXXXXXRVLGSKGSIIXXXXXXXXXXXXXXXXQRYGLQDIIEIRQGSWFGK 259
DLGT V +I +++ +++ G W
Sbjct: 118 -DLGTGSGAVALAIA-VERPHWTIDATDNSQAALKIAEINAKQHEIKNC-NFYHGEWCQA 174
Query: 260 LKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPR 295
L + +V NPPYIP D Q+ KHEPR
Sbjct: 175 LPRRD--YHAIVGNPPYIPDKDQHLQQL---KHEPR 205
|
|
| TIGR_CMR|CBU_1964 CBU_1964 "protein methyltransferase HemK" [Coxiella burnetii RSA 493 (taxid:227377)] | Back alignment and assigned GO terms |
|---|
Score = 124 (48.7 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 45/156 (28%), Positives = 68/156 (43%)
Query: 140 KQRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFW 199
K+R+ K +P Y++G + + L L V V IPRPETE++V+ + L +D + LR
Sbjct: 62 KRRL-KGEPIAYILGQKEFWSLNLKVTPDVLIPRPETEMLVEWILKNLPKD-EKLRIA-- 117
Query: 200 VDLGTXXXXXXXXXXRVLGSKGSIIXXXXXXXXXXXXXXXXQRYGLQDIIEIRQGSWFGK 259
DLGT V +I +++ +++ G W
Sbjct: 118 -DLGTGSGAVALAIA-VERPHWTIDATDNSQAALKIAEINAKQHEIKNC-NFYHGEWCQA 174
Query: 260 LKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPR 295
L + +V NPPYIP D Q+ KHEPR
Sbjct: 175 LPRRD--YHAIVGNPPYIPDKDQHLQQL---KHEPR 205
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.1.1 | 0.691 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 324 | |||
| PRK09328 | 275 | PRK09328, PRK09328, N5-glutamine S-adenosyl-L-meth | 1e-61 | |
| TIGR03534 | 251 | TIGR03534, RF_mod_PrmC, protein-(glutamine-N5) met | 1e-56 | |
| COG2890 | 280 | COG2890, HemK, Methylase of polypeptide chain rele | 3e-48 | |
| TIGR00536 | 284 | TIGR00536, hemK_fam, HemK family putative methylas | 1e-46 | |
| TIGR03533 | 284 | TIGR03533, L3_gln_methyl, protein-(glutamine-N5) m | 8e-31 | |
| PRK11805 | 307 | PRK11805, PRK11805, N5-glutamine S-adenosyl-L-meth | 8e-29 | |
| TIGR03704 | 251 | TIGR03704, PrmC_rel_meth, putative protein-(glutam | 2e-24 | |
| PRK01544 | 506 | PRK01544, PRK01544, bifunctional N5-glutamine S-ad | 2e-19 | |
| PRK14966 | 423 | PRK14966, PRK14966, unknown domain/N5-glutamine S- | 1e-17 | |
| PRK14967 | 223 | PRK14967, PRK14967, putative methyltransferase; Pr | 6e-14 | |
| pfam13659 | 117 | pfam13659, Methyltransf_26, Methyltransferase doma | 2e-12 | |
| PRK14968 | 188 | PRK14968, PRK14968, putative methyltransferase; Pr | 4e-11 | |
| cd02440 | 107 | cd02440, AdoMet_MTases, S-adenosylmethionine-depen | 2e-08 | |
| TIGR00537 | 179 | TIGR00537, hemK_rel_arch, HemK-related putative me | 1e-07 | |
| COG4123 | 248 | COG4123, COG4123, Predicted O-methyltransferase [G | 3e-07 | |
| PRK00517 | 250 | PRK00517, prmA, ribosomal protein L11 methyltransf | 4e-07 | |
| pfam05175 | 170 | pfam05175, MTS, Methyltransferase small domain | 5e-07 | |
| pfam06325 | 294 | pfam06325, PrmA, Ribosomal protein L11 methyltrans | 6e-07 | |
| pfam01170 | 172 | pfam01170, UPF0020, Putative RNA methylase family | 8e-07 | |
| COG2242 | 187 | COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme | 1e-06 | |
| TIGR00406 | 288 | TIGR00406, prmA, ribosomal protein L11 methyltrans | 1e-06 | |
| pfam13847 | 151 | pfam13847, Methyltransf_31, Methyltransferase doma | 3e-06 | |
| COG2264 | 300 | COG2264, PrmA, Ribosomal protein L11 methylase [Tr | 8e-06 | |
| pfam12847 | 104 | pfam12847, Methyltransf_18, Methyltransferase doma | 1e-05 | |
| COG2263 | 198 | COG2263, COG2263, Predicted RNA methylase [Transla | 2e-05 | |
| COG2519 | 256 | COG2519, GCD14, tRNA(1-methyladenosine) methyltran | 2e-05 | |
| PRK00377 | 198 | PRK00377, cbiT, cobalt-precorrin-6Y C(15)-methyltr | 3e-05 | |
| PRK11783 | 702 | PRK11783, rlmL, 23S rRNA m(2)G2445 methyltransfera | 7e-05 | |
| COG4122 | 219 | COG4122, COG4122, Predicted O-methyltransferase [G | 1e-04 | |
| TIGR02469 | 124 | TIGR02469, CbiT, precorrin-6Y C5,15-methyltransfer | 2e-04 | |
| COG0116 | 381 | COG0116, COG0116, Predicted N6-adenine-specific DN | 5e-04 | |
| COG2813 | 300 | COG2813, RsmC, 16S RNA G1207 methylase RsmC [Trans | 0.001 | |
| pfam09445 | 165 | pfam09445, Methyltransf_15, RNA cap guanine-N2 met | 0.002 | |
| PRK13944 | 205 | PRK13944, PRK13944, protein-L-isoaspartate O-methy | 0.004 |
| >gnl|CDD|236467 PRK09328, PRK09328, N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 196 bits (502), Expect = 1e-61
Identities = 82/193 (42%), Positives = 105/193 (54%), Gaps = 9/193 (4%)
Query: 132 LDELYGLWKQRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDN 191
L+ L +R +P QY++G + L V GV IPRPETE +V+ + L
Sbjct: 50 LERFRALVARRA-AGEPLQYILGEAEFWGLDFKVSPGVLIPRPETEELVEWALEAL-LLK 107
Query: 192 DGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEI 251
+ LR +DLGTGSGAIA+ +A+ + AVD++P A AVA NA+ GL +E
Sbjct: 108 EPLR---VLDLGTGSGAIALALAKERPDA-EVTAVDISPEALAVARRNAKH-GLGARVEF 162
Query: 252 RQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHL 311
QG WF L G+ +VSNPPYIP DI LQ EV HEP LAL GG DGLD+ +
Sbjct: 163 LQGDWFEPLPG--GRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRI 220
Query: 312 CNGTASMLKPDKW 324
LKP W
Sbjct: 221 IEQAPRYLKPGGW 233
|
Length = 275 |
| >gnl|CDD|234248 TIGR03534, RF_mod_PrmC, protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Score = 183 bits (468), Expect = 1e-56
Identities = 84/194 (43%), Positives = 104/194 (53%), Gaps = 11/194 (5%)
Query: 133 DELYGLWK--QRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRD 190
+EL R K +P Y++G + L V GV IPRPETE +V+ + L
Sbjct: 28 EELARFDALLARRAKGEPVAYILGEREFYGLDFKVSPGVLIPRPETEELVEAALERL--K 85
Query: 191 NDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIE 250
LR +DLGTGSGAIA+ +A+ + AVD++P A AVA NA R GL D +E
Sbjct: 86 KGPLR---VLDLGTGSGAIALALAKER-PDARVTAVDISPEALAVARKNAARLGL-DNVE 140
Query: 251 IRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLH 310
Q WF L GK +VSNPPYIP DI L EV HEPRLAL GG DGLD+
Sbjct: 141 FLQSDWFEPLPG--GKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRR 198
Query: 311 LCNGTASMLKPDKW 324
+ +LKP W
Sbjct: 199 IIAQAPRLLKPGGW 212
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3 [Protein fate, Protein modification and repair]. Length = 251 |
| >gnl|CDD|225443 COG2890, HemK, Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 162 bits (413), Expect = 3e-48
Identities = 74/186 (39%), Positives = 107/186 (57%), Gaps = 11/186 (5%)
Query: 139 WKQRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGF 198
+R + +P Y++G + L V+EGV IPRP+TEL+V+ +L++ D
Sbjct: 59 LLERRAEGEPVAYILGSAEFGGLRFKVDEGVLIPRPDTELLVEAALALLLQL-----DKR 113
Query: 199 WVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFG 258
+DLGTGSGAIAI +A+ +IAVD++P A A+A NA+R GL ++ + Q F
Sbjct: 114 ILDLGTGSGAIAIALAKEGP-DAEVIAVDISPDALALARENAERNGLVRVLVV-QSDLFE 171
Query: 259 KLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASM 318
L+ GK +VSNPPYIP++D L EV ++EP LAL GG DGL+ + +
Sbjct: 172 PLR---GKFDLIVSNPPYIPAEDPE-LLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDI 227
Query: 319 LKPDKW 324
LKP
Sbjct: 228 LKPGGV 233
|
Length = 280 |
| >gnl|CDD|129627 TIGR00536, hemK_fam, HemK family putative methylases | Back alignment and domain information |
|---|
Score = 158 bits (402), Expect = 1e-46
Identities = 83/264 (31%), Positives = 123/264 (46%), Gaps = 31/264 (11%)
Query: 62 TLSDLKKWHNWAKALASSVRSTFADSDNGPDSSILFRELNWLVEDSLEDPSLIPQLGFQN 121
T+ + +W ASS S +N ++L L+ L +
Sbjct: 2 TIQEALRW-------ASSALSRAIARENPWLEALL------LLLHDLGRERDLLLAFLT- 47
Query: 122 NSQSVRLRIGLDELYGLWKQRIEKRK---PFQYLVGCEHWRDLVLSVEEGVFIPRPETEL 178
+ DE + + + +R P YL+G + + L V E V IPRPETE
Sbjct: 48 ------EELTPDEKERI-FRLVLRRVKGVPVAYLLGSKEFYGLEFFVNEHVLIPRPETEE 100
Query: 179 MVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF 238
+V+ L+ N L +DLGTGSG IA+ +A + +IAVD++P A AVA
Sbjct: 101 LVEKALASLISQNPILH---ILDLGTGSGCIALALAYEFPNA-EVIAVDISPDALAVAEE 156
Query: 239 NAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLAL 298
NA++ L+ +E Q + F L K+ +VSNPPYI +D++ L V + EP LAL
Sbjct: 157 NAEKNQLEHRVEFIQSNLFEPLAGQ--KIDIIVSNPPYIDEEDLADLPNVV-RFEPLLAL 213
Query: 299 DGGVDGLDYLLHLCNGTASMLKPD 322
GG DGL+ L + LKP+
Sbjct: 214 VGGDDGLNILRQIIELAPDYLKPN 237
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain [Protein fate, Protein modification and repair]. Length = 284 |
| >gnl|CDD|234247 TIGR03533, L3_gln_methyl, protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Score = 117 bits (295), Expect = 8e-31
Identities = 73/203 (35%), Positives = 100/203 (49%), Gaps = 33/203 (16%)
Query: 133 DELYGLWKQRIEKRKPFQYLVGCEHW-RDLVLSVEEGVFIPR-PETELMVDLVSDVLVRD 190
+ + L ++RIE+R P YL E W L V+E V IPR P EL
Sbjct: 62 ERILELIERRIEERIPVAYLTN-EAWFAGLEFYVDERVLIPRSPIAEL------------ 108
Query: 191 NDGLRDGF--WV---------DLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFN 239
+ DGF W+ DL TGSG IAI A + + AVD++P A AVA N
Sbjct: 109 ---IEDGFAPWLEPEPVKRILDLCTGSGCIAIACAYAF-PEAEVDAVDISPDALAVAEIN 164
Query: 240 AQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALD 299
+R+GL+D + + Q F L + L +VSNPPY+ ++D++ L E HEP LAL
Sbjct: 165 IERHGLEDRVTLIQSDLFAALPGRKYDL--IVSNPPYVDAEDMADLPAEYH-HEPELALA 221
Query: 300 GGVDGLDYLLHLCNGTASMLKPD 322
G DGLD + + A L +
Sbjct: 222 SGEDGLDLVRRILAEAADHLNEN 244
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 284 |
| >gnl|CDD|236988 PRK11805, PRK11805, N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 8e-29
Identities = 67/180 (37%), Positives = 90/180 (50%), Gaps = 33/180 (18%)
Query: 140 KQRIEKRKPFQYLVGCEHW-RDLVLSVEEGVFIPR-PETELMVDLVSDVLVRDNDGLRDG 197
++RI +R P YL E W L V+E V +PR P EL + DG
Sbjct: 81 ERRINERIPAAYLTN-EAWFCGLEFYVDERVLVPRSPIAEL---------------IEDG 124
Query: 198 F--WV---------DLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQ 246
F W+ DL TGSG IAI A + AVD++P A AVA N +R+GL+
Sbjct: 125 FAPWLEDPPVTRILDLCTGSGCIAIACAYAF-PDAEVDAVDISPDALAVAEINIERHGLE 183
Query: 247 DIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLD 306
D + + + F L L +VSNPPY+ ++D++ L E +HEP LAL G DGLD
Sbjct: 184 DRVTLIESDLFAALPGRRYDL--IVSNPPYVDAEDMADLPAEY-RHEPELALAAGDDGLD 240
|
Length = 307 |
| >gnl|CDD|234318 TIGR03704, PrmC_rel_meth, putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Score = 99.1 bits (247), Expect = 2e-24
Identities = 59/190 (31%), Positives = 91/190 (47%), Gaps = 10/190 (5%)
Query: 133 DELYGLWKQRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDND 192
EL + +R+ P ++++G + L ++V+ GVF+PR TE +VD
Sbjct: 28 GELAAMVDRRVAG-LPLEHVLGWAEFCGLRIAVDPGVFVPRRRTEFLVDEA---AALARP 83
Query: 193 GLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIR 252
VDL GSGA+ +A L + A D++P A A N G +
Sbjct: 84 RSGTLVVVDLCCGSGAVGAALAAALDGI-ELHAADIDPAAVRCARRNLADAGGT----VH 138
Query: 253 QGSWFGKL-KDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHL 311
+G + L + G++ + +N PY+P+D I+ + E HEPR+ALDGG DGLD L +
Sbjct: 139 EGDLYDALPTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRV 198
Query: 312 CNGTASMLKP 321
G L P
Sbjct: 199 AAGAPDWLAP 208
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 251 |
| >gnl|CDD|234958 PRK01544, PRK01544, bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Score = 88.4 bits (219), Expect = 2e-19
Identities = 60/202 (29%), Positives = 94/202 (46%), Gaps = 23/202 (11%)
Query: 141 QRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLV----------------- 183
+R K +P Y+ G + + V + V IPR +TE++VD+V
Sbjct: 64 ERRLKHEPIAYITGVKEFYSREFIVNKHVLIPRSDTEVLVDVVFQCHSRESGNPEKKQLN 123
Query: 184 ---SDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNA 240
+ N + ++LGTGSG IAI + L ++IA D++ A VA NA
Sbjct: 124 PCFRGNDISSNCNDKFLNILELGTGSGCIAISLLCEL-PNANVIATDISLDAIEVAKSNA 182
Query: 241 QRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDG 300
+Y + D I+I +WF ++ + K +VSNPPYI + S + +E +EP +AL
Sbjct: 183 IKYEVTDRIQIIHSNWFENIE--KQKFDFIVSNPPYISHSEKSEMAIETINYEPSIALFA 240
Query: 301 GVDGLDYLLHLCNGTASMLKPD 322
DGL + LKP+
Sbjct: 241 EEDGLQAYFIIAENAKQFLKPN 262
|
Length = 506 |
| >gnl|CDD|184930 PRK14966, PRK14966, unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Score = 82.4 bits (203), Expect = 1e-17
Identities = 67/179 (37%), Positives = 90/179 (50%), Gaps = 10/179 (5%)
Query: 141 QRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWV 200
QR +P Y++G + +V V IPRPETE LV VL R + R W
Sbjct: 203 QRRLNGEPVAYILGVREFYGRRFAVNPNVLIPRPETE---HLVEAVLARLPENGR--VW- 256
Query: 201 DLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKL 260
DLGTGSGA+A+ +A + + A D++P A A NA G + +E GSWF
Sbjct: 257 DLGTGSGAVAVTVA-LERPDAFVRASDISPPALETARKNAADLGAR--VEFAHGSWFDTD 313
Query: 261 KDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASML 319
EGK +VSNPPYI + D LQ ++ + EP++AL DGL + L G L
Sbjct: 314 MPSEGKWDIIVSNPPYIENGDKHLLQGDL-RFEPQIALTDFSDGLSCIRTLAQGAPDRL 371
|
Length = 423 |
| >gnl|CDD|184931 PRK14967, PRK14967, putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 69.3 bits (170), Expect = 6e-14
Identities = 53/156 (33%), Positives = 78/156 (50%), Gaps = 18/156 (11%)
Query: 167 EGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWV-DLGTGSGAIAIGIARVLGSKGSIIA 225
GV+ P+ +T+L+ D L + GL G V DL TGSGA+A+ A G+ GS+ A
Sbjct: 13 PGVYRPQEDTQLLAD----ALAAE--GLGPGRRVLDLCTGSGALAVAAAA-AGA-GSVTA 64
Query: 226 VDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGL 285
VD++ A A NA G+ +++R+G W ++ VVSNPPY+P+ +
Sbjct: 65 VDISRRAVRSARLNALLAGVD--VDVRRGDWARAVE--FRPFDVVVSNPPYVPAPPDA-- 118
Query: 286 QVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKP 321
P A D G DG L LC+ ++L P
Sbjct: 119 ---PPSRGPARAWDAGPDGRAVLDRLCDAAPALLAP 151
|
Length = 223 |
| >gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 62.8 bits (153), Expect = 2e-12
Identities = 27/80 (33%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Query: 200 VDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGK 259
+D G GSGA + AR G ++ V+L+P AAA+A GL + + G
Sbjct: 5 LDPGAGSGAFLLAAAR-AGPDARVVGVELDPEAAALARRRLALAGLAPRVRVVVGDAREL 63
Query: 260 LKDVEGKLSGVVSNPPYIPS 279
L+ +G V+ NPPY P
Sbjct: 64 LELPDGSFDLVLGNPPYGPR 83
|
This family contains methyltransferase domains. Length = 117 |
| >gnl|CDD|237872 PRK14968, PRK14968, putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 60.7 bits (148), Expect = 4e-11
Identities = 37/143 (25%), Positives = 70/143 (48%), Gaps = 19/143 (13%)
Query: 165 VEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSII 224
+ + V+ P ++ L+ + + + D + +++GTGSG +AI A+ G K ++
Sbjct: 1 LNDEVYEPAEDSFLLAENA---VDKKGDRV-----LEVGTGSGIVAIVAAK-NGKK--VV 49
Query: 225 AVDLNPLAAAVAAFNAQRYGLQDI-IEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDIS 283
VD+NP A A NA+ +++ +E+ + F + K ++ NPPY+P+++
Sbjct: 50 GVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRG--DKFDVILFNPPYLPTEE-- 105
Query: 284 GLQVEVGKHEPRLALDGGVDGLD 306
E AL GG DG +
Sbjct: 106 ---EEEWDDWLNYALSGGKDGRE 125
|
Length = 188 |
| >gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 2e-08
Identities = 20/82 (24%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
Query: 200 VDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGK 259
+DLG G+GA+A+ +A G + VD++P+A +A A + +E+ +G
Sbjct: 3 LDLGCGTGALALALAS--GPGARVTGVDISPVALELARKAAAALLADN-VEVLKGDAEEL 59
Query: 260 LKDVEGKLSGVVSNPPYIPSDD 281
+ + ++S+PP +
Sbjct: 60 PPEADESFDVIISDPPLHHLVE 81
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107 |
| >gnl|CDD|129628 TIGR00537, hemK_rel_arch, HemK-related putative methylase | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 1e-07
Identities = 35/124 (28%), Positives = 57/124 (45%), Gaps = 17/124 (13%)
Query: 200 VDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGK 259
+++G G+G +AI R+ G I+ D+NP A NA+ + +++ F
Sbjct: 24 LEIGAGTGLVAI---RLKGKGKCILTTDINPFAVKELRENAKLNNVG--LDVVMTDLF-- 76
Query: 260 LKDVEGKLSGVVSNPPYIPS--DDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTAS 317
K V GK ++ NPPY+P D G ++V A+DGG DG + +
Sbjct: 77 -KGVRGKFDVILFNPPYLPLEDDLRRGDWLDV-------AIDGGKDGRKVIDRFLDELPE 128
Query: 318 MLKP 321
+LK
Sbjct: 129 ILKE 132
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes [Unknown function, Enzymes of unknown specificity]. Length = 179 |
| >gnl|CDD|226608 COG4123, COG4123, Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 3e-07
Identities = 32/127 (25%), Positives = 53/127 (41%), Gaps = 16/127 (12%)
Query: 200 VDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSW--F 257
+DLG G+GA+ + +A+ K I+ V++ AA +A N L++ I++ + F
Sbjct: 49 LDLGAGNGALGLLLAQ-RTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEF 107
Query: 258 GKLKDVEGKLSGVVSNPPYIPSDDISGL--QVEVGKHEPRLALDGGVDGLDYLLHLCNGT 315
K V ++ NPPY + +HE L L+ L
Sbjct: 108 LKAL-VFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLED----------LIRAA 156
Query: 316 ASMLKPD 322
A +LKP
Sbjct: 157 AKLLKPG 163
|
Length = 248 |
| >gnl|CDD|234786 PRK00517, prmA, ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Score = 49.8 bits (120), Expect = 4e-07
Identities = 23/56 (41%), Positives = 34/56 (60%), Gaps = 6/56 (10%)
Query: 201 DLGTGSG--AIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQG 254
D+G GSG AIA A LG+K ++AVD++P A A NA+ G++ + + QG
Sbjct: 125 DVGCGSGILAIA---AAKLGAK-KVLAVDIDPQAVEAARENAELNGVELNVYLPQG 176
|
Length = 250 |
| >gnl|CDD|203189 pfam05175, MTS, Methyltransferase small domain | Back alignment and domain information |
|---|
Score = 48.7 bits (117), Expect = 5e-07
Identities = 25/96 (26%), Positives = 42/96 (43%), Gaps = 4/96 (4%)
Query: 180 VDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFN 239
+D+ S +L+ G +DLG G G + +A+ + VD+N A A N
Sbjct: 16 LDIGSRLLLSHLPKPLGGKVLDLGCGYGVLGAALAK-RSPDLEVTMVDINARALESARAN 74
Query: 240 AQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPP 275
GL + E+ + ++ GK ++SNPP
Sbjct: 75 LAANGL-ENGEVFWSDLYSAVEP--GKFDLIISNPP 107
|
This domain is found in ribosomal RNA small subunit methyltransferase C as well as other methyltransferases . Length = 170 |
| >gnl|CDD|218990 pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA) | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 6e-07
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 9/74 (12%)
Query: 201 DLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKL 260
D+G GSG +AI + LG+K ++ VD++P+A A NA+ G++ +E+
Sbjct: 166 DVGCGSGILAIAALK-LGAK-KVVGVDIDPVAVRAAKENAELNGVEAQLEVYL------P 217
Query: 261 KDV-EGKLSGVVSN 273
D+ EGK VV+N
Sbjct: 218 GDLPEGKADVVVAN 231
|
This family consists of several Ribosomal protein L11 methyltransferase (EC:2.1.1.-) sequences. Length = 294 |
| >gnl|CDD|216342 pfam01170, UPF0020, Putative RNA methylase family UPF0020 | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 8e-07
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Query: 205 GSGAIAIGIARVLGSKG-SIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDV 263
GSG I I A ++G+ + D++ A NA+ G+ D IE Q KL +
Sbjct: 38 GSGTILIE-AALMGANIAPLYGSDIDWRMVQGARINAENAGVGDKIEFVQAD-AAKLPLL 95
Query: 264 EGKLSGVVSNPPY 276
G + +V+NPPY
Sbjct: 96 NGSVDAIVTNPPY 108
|
This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains. Length = 172 |
| >gnl|CDD|225151 COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 1e-06
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 5/65 (7%)
Query: 193 GLRDG--FWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIE 250
R G W D+G G+G+I I A G G +IA++ + A + NA R+G+ D +E
Sbjct: 31 RPRPGDRLW-DIGAGTGSITIEWALA-GPSGRVIAIERDEEALELIERNAARFGV-DNLE 87
Query: 251 IRQGS 255
+ +G
Sbjct: 88 VVEGD 92
|
Length = 187 |
| >gnl|CDD|232960 TIGR00406, prmA, ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 1e-06
Identities = 37/146 (25%), Positives = 68/146 (46%), Gaps = 23/146 (15%)
Query: 139 WKQRIEKRKPFQYLVGCEHWRDLVLSVEEGVFI-----------PRPETELMVDLVSDVL 187
WK + + C WRD V S E+ + I P T L ++ + D+
Sbjct: 99 WKDNFHPVQFGKRFWICPSWRD-VPSDEDALIIMLDPGLAFGTGTHPTTSLCLEWLEDLD 157
Query: 188 VRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQD 247
++D + + D+G GSG ++I A LG+ ++ +D++PLA A NA+ + D
Sbjct: 158 LKDKNVI------DVGCGSGILSIA-ALKLGAA-KVVGIDIDPLAVESARKNAELNQVSD 209
Query: 248 IIEIRQGSWFGKLKDVEGKLSGVVSN 273
++++ + +EGK +V+N
Sbjct: 210 RLQVKLI---YLEQPIEGKADVIVAN 232
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 288 |
| >gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 3e-06
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 200 VDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWF 257
+DLG G+G + +A LG ++ +D++ A A NA++ G ++ +E QG
Sbjct: 8 LDLGCGTGYLTFILAEKLGPGAEVVGIDISEEAIEKAKENAKKLGYEN-VEFIQGDIE 64
|
This family appears to be have methyltransferase activity. Length = 151 |
| >gnl|CDD|225173 COG2264, PrmA, Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 8e-06
Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Query: 201 DLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKL 260
D+G GSG +AI A+ LG+K ++ VD++P A A NA+ G++ +++ +
Sbjct: 168 DVGCGSGILAIAAAK-LGAK-KVVGVDIDPQAVEAARENARLNGVELLVQAKGFL--LLE 223
Query: 261 KDVEGKLSGVVSN 273
G +V+N
Sbjct: 224 VPENGPFDVIVAN 236
|
Length = 300 |
| >gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 1e-05
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 199 WVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFG 258
+D+G G+G++AI +AR L + VDL+P +A NA+ L I QG
Sbjct: 5 VLDIGCGTGSLAIELAR-LFPGARVTGVDLSPEMLELARENAKL-ALGPRITFVQGDAPD 62
Query: 259 KLKDVEG 265
L +EG
Sbjct: 63 ALDLLEG 69
|
Protein in this family function as methyltransferases. Length = 104 |
| >gnl|CDD|225172 COG2263, COG2263, Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 2e-05
Identities = 37/126 (29%), Positives = 61/126 (48%), Gaps = 17/126 (13%)
Query: 159 RDLVLSVEEGVFIPRPETEL---MVD--LVSDVL-VRDNDGLRDGFWV-DLGTGSGAIAI 211
++L + +E+ P P+ L L + +L V G +G V DLG G+G +AI
Sbjct: 2 KELEILLEKLKGFPNPKLGLEQYRTPAPLAAYILWVAYLRGDLEGKTVLDLGAGTGILAI 61
Query: 212 GIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQ-DIIEIRQGSWFGKLKDVEGKLSGV 270
G A +LG+ ++AVD++P A +A NA+ + + + D GK V
Sbjct: 62 G-AALLGAS-RVLAVDIDPEALEIARANAEELLGDVEFVV-------ADVSDFRGKFDTV 112
Query: 271 VSNPPY 276
+ NPP+
Sbjct: 113 IMNPPF 118
|
Length = 198 |
| >gnl|CDD|225317 COG2519, GCD14, tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 2e-05
Identities = 17/55 (30%), Positives = 30/55 (54%)
Query: 200 VDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQG 254
++ GTGSGA+ +AR +G +G + ++ A A N +GL D + ++ G
Sbjct: 99 LEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLG 153
|
Length = 256 |
| >gnl|CDD|234740 PRK00377, cbiT, cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 3e-05
Identities = 21/84 (25%), Positives = 46/84 (54%), Gaps = 5/84 (5%)
Query: 171 IPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNP 230
IP + E+ +S + +R D + +D+G G+G++ + + ++G G + AVD +
Sbjct: 21 IPMTKEEIRALALSKLRLRKGDMI-----LDIGCGTGSVTVEASLLVGETGKVYAVDKDE 75
Query: 231 LAAAVAAFNAQRYGLQDIIEIRQG 254
A + NA+++G+ + I + +G
Sbjct: 76 KAINLTRRNAEKFGVLNNIVLIKG 99
|
Length = 198 |
| >gnl|CDD|236981 PRK11783, rlmL, 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 44.0 bits (105), Expect = 7e-05
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 6/69 (8%)
Query: 210 AIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSG 269
G+A + D++P A NA+R G+ ++I LK+ K
Sbjct: 249 RAGLAEL---PSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKD-VADLKNPLPKGPT 304
Query: 270 --VVSNPPY 276
V+SNPPY
Sbjct: 305 GLVISNPPY 313
|
Length = 702 |
| >gnl|CDD|226607 COG4122, COG4122, Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 1e-04
Identities = 15/55 (27%), Positives = 27/55 (49%)
Query: 200 VDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQG 254
+++GT G A+ +A L G + ++ + A +A N G+ D IE+ G
Sbjct: 64 LEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLG 118
|
Length = 219 |
| >gnl|CDD|233880 TIGR02469, CbiT, precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 2e-04
Identities = 22/65 (33%), Positives = 37/65 (56%), Gaps = 5/65 (7%)
Query: 193 GLRDG--FWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIE 250
LR G W D+G G+G++ I AR++ G + A++ NP A + N +R+G+ + I
Sbjct: 16 RLRPGDVLW-DIGAGTGSVTIEAARLVP-NGRVYAIERNPEALDLIERNLRRFGVSN-IV 72
Query: 251 IRQGS 255
I +G
Sbjct: 73 IVEGD 77
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]. Length = 124 |
| >gnl|CDD|223194 COG0116, COG0116, Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 5e-04
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 223 IIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPY 276
I D++P A NA+ G+ D+IE +Q LK+ + V+SNPPY
Sbjct: 257 IYGSDIDPRHIEGAKANARAAGVGDLIEFKQAD-ATDLKEPLEEYGVVISNPPY 309
|
Length = 381 |
| >gnl|CDD|225370 COG2813, RsmC, 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.001
Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 5/97 (5%)
Query: 179 MVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF 238
+D S +L+ G +DLG G G + + +A+ + + VD+N A A
Sbjct: 142 KLDKGSRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKK-SPQAKLTLVDVNARAVESARK 200
Query: 239 NAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPP 275
N G+++ E+ + + + VEGK ++SNPP
Sbjct: 201 NLAANGVENT-EVWASNLY---EPVEGKFDLIISNPP 233
|
Length = 300 |
| >gnl|CDD|220246 pfam09445, Methyltransf_15, RNA cap guanine-N2 methyltransferase | Back alignment and domain information |
|---|
Score = 38.0 bits (89), Expect = 0.002
Identities = 28/80 (35%), Positives = 39/80 (48%), Gaps = 6/80 (7%)
Query: 200 VDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWF-- 257
+D+ G+G I A V S +I +D+NP A A NA+ YG+ D I G WF
Sbjct: 5 LDVFCGAGGNTIQFANVFCS---VIGIDINPEHLACAQHNAEVYGVSDRIWFILGDWFEL 61
Query: 258 -GKLKDVEGKLSGVVSNPPY 276
KLK + V +PP+
Sbjct: 62 LAKLKFGKIPYDCVFLSPPW 81
|
RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe Tgs1 and Giardia lamblia Tgs2 catalyze methylation of the exocyclic N2 amine of 7-methylguanosine. Length = 165 |
| >gnl|CDD|140001 PRK13944, PRK13944, protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 37.5 bits (87), Expect = 0.004
Identities = 17/55 (30%), Positives = 29/55 (52%)
Query: 200 VDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQG 254
+++GTGSG A A + +G + V++ A AA N +R G ++E+ G
Sbjct: 77 LEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHG 131
|
Length = 205 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 324 | |||
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 100.0 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 100.0 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 100.0 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 100.0 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 100.0 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 100.0 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 100.0 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 100.0 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 100.0 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 99.97 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 99.97 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.89 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 99.86 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 99.82 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.81 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 99.8 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.77 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 99.77 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 99.77 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 99.77 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 99.77 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 99.73 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.73 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 99.69 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.66 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 99.65 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 99.65 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 99.65 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 99.64 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.62 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 99.61 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 99.61 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 99.6 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 99.59 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 99.58 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.58 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 99.57 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 99.57 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.57 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.57 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.57 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 99.55 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 99.54 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 99.54 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 99.54 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.54 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 99.53 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.52 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.52 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 99.52 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 99.52 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.51 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 99.5 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 99.5 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.5 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 99.49 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 99.49 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 99.48 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.48 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 99.48 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.48 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 99.47 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.45 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.45 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.45 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.45 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 99.44 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.44 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 99.43 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.43 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.43 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.43 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 99.42 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 99.42 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.41 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.41 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.4 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 99.4 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.4 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 99.4 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.39 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 99.39 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.38 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.38 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 99.37 | |
| PLN02476 | 278 | O-methyltransferase | 99.37 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.37 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 99.36 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 99.36 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 99.36 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 99.35 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.35 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.35 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 99.34 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.34 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.34 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.34 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 99.34 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 99.33 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.33 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 99.33 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.33 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.33 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 99.33 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 99.32 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 99.32 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 99.32 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 99.31 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 99.31 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.3 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 99.28 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.28 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.27 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 99.27 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 99.26 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 99.25 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.25 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 99.24 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 99.24 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 99.24 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.24 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 99.23 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 99.23 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 99.22 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 99.22 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.22 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.22 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 99.22 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 99.21 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.21 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 99.21 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.2 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.2 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.2 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 99.19 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 99.19 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.19 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 99.19 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 99.19 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 99.19 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.18 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.16 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 99.16 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 99.16 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.15 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 99.15 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.14 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 99.13 | |
| PLN02366 | 308 | spermidine synthase | 99.12 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 99.11 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 99.11 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 99.11 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 99.11 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 99.1 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 99.1 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.09 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 99.07 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.07 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 99.05 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 99.04 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 99.04 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.04 | |
| KOG2730 | 263 | consensus Methylase [General function prediction o | 98.99 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 98.99 | |
| COG0286 | 489 | HsdM Type I restriction-modification system methyl | 98.99 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 98.98 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 98.97 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 98.96 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 98.92 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 98.91 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 98.9 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 98.9 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 98.89 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 98.85 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 98.81 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 98.81 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 98.81 | |
| COG3129 | 292 | Predicted SAM-dependent methyltransferase [General | 98.8 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 98.78 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 98.77 | |
| PLN02823 | 336 | spermine synthase | 98.77 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 98.76 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 98.76 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 98.75 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 98.73 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 98.71 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 98.66 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 98.65 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 98.65 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 98.64 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 98.63 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 98.63 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 98.6 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 98.59 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 98.57 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 98.56 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 98.56 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 98.52 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 98.48 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 98.45 | |
| KOG2912 | 419 | consensus Predicted DNA methylase [Function unknow | 98.42 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 98.41 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 98.41 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 98.35 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 98.32 | |
| KOG2671 | 421 | consensus Putative RNA methylase [Replication, rec | 98.31 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 98.31 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 98.31 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 98.23 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 98.23 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 98.21 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 98.21 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 98.2 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 98.19 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 98.19 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 98.19 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 98.17 | |
| PF11599 | 246 | AviRa: RRNA methyltransferase AviRa; InterPro: IPR | 98.11 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 98.1 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 98.1 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 98.1 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 98.09 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 98.08 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 98.06 | |
| TIGR00497 | 501 | hsdM type I restriction system adenine methylase ( | 98.04 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 98.03 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 98.03 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 98.0 | |
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 97.99 | |
| KOG1122 | 460 | consensus tRNA and rRNA cytosine-C5-methylase (nuc | 97.99 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 97.99 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 97.93 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 97.92 | |
| PF02005 | 377 | TRM: N2,N2-dimethylguanosine tRNA methyltransferas | 97.89 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 97.85 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 97.82 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 97.79 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 97.79 | |
| COG1867 | 380 | TRM1 N2,N2-dimethylguanosine tRNA methyltransferas | 97.76 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 97.73 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 97.57 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 97.56 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 97.44 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 97.44 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 97.43 | |
| cd00315 | 275 | Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth | 97.41 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 97.4 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 97.33 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 97.23 | |
| COG1568 | 354 | Predicted methyltransferases [General function pre | 97.2 | |
| COG0275 | 314 | Predicted S-adenosylmethionine-dependent methyltra | 97.17 | |
| PF01795 | 310 | Methyltransf_5: MraW methylase family; InterPro: I | 97.1 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 97.08 | |
| PF07669 | 106 | Eco57I: Eco57I restriction-modification methylase; | 97.06 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 97.05 | |
| PF01555 | 231 | N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th | 96.94 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 96.91 | |
| KOG1253 | 525 | consensus tRNA methyltransferase [Translation, rib | 96.88 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 96.86 | |
| KOG4058 | 199 | consensus Uncharacterized conserved protein [Funct | 96.82 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 96.79 | |
| PRK13699 | 227 | putative methylase; Provisional | 96.78 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 96.72 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 96.71 | |
| KOG1501 | 636 | consensus Arginine N-methyltransferase [General fu | 96.6 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 96.52 | |
| PF04445 | 234 | SAM_MT: Putative SAM-dependent methyltransferase; | 96.51 | |
| KOG1227 | 351 | consensus Putative methyltransferase [General func | 96.49 | |
| KOG0822 | 649 | consensus Protein kinase inhibitor [Cell cycle con | 96.45 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 96.31 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 96.26 | |
| KOG2198 | 375 | consensus tRNA cytosine-5-methylases and related e | 96.24 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 96.21 | |
| PF00145 | 335 | DNA_methylase: C-5 cytosine-specific DNA methylase | 96.2 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 96.2 | |
| PHA01634 | 156 | hypothetical protein | 96.2 | |
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 96.1 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 96.02 | |
| PRK13699 | 227 | putative methylase; Provisional | 95.81 | |
| KOG2078 | 495 | consensus tRNA modification enzyme [RNA processing | 95.8 | |
| PF10354 | 166 | DUF2431: Domain of unknown function (DUF2431); Int | 95.78 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 95.75 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 95.45 | |
| TIGR00675 | 315 | dcm DNA-methyltransferase (dcm). All proteins in t | 95.38 | |
| COG0270 | 328 | Dcm Site-specific DNA methylase [DNA replication, | 95.21 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 95.16 | |
| PRK10458 | 467 | DNA cytosine methylase; Provisional | 95.14 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 95.1 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 94.77 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 94.65 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 94.6 | |
| KOG1596 | 317 | consensus Fibrillarin and related nucleolar RNA-bi | 93.79 | |
| KOG3924 | 419 | consensus Putative protein methyltransferase invol | 93.77 | |
| KOG1099 | 294 | consensus SAM-dependent methyltransferase/cell div | 93.73 | |
| KOG2793 | 248 | consensus Putative N2,N2-dimethylguanosine tRNA me | 93.68 | |
| PTZ00357 | 1072 | methyltransferase; Provisional | 93.66 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 93.59 | |
| KOG2360 | 413 | consensus Proliferation-associated nucleolar prote | 93.47 | |
| COG1565 | 370 | Uncharacterized conserved protein [Function unknow | 93.28 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 93.05 | |
| KOG1562 | 337 | consensus Spermidine synthase [Amino acid transpor | 92.98 | |
| PF02636 | 252 | Methyltransf_28: Putative S-adenosyl-L-methionine- | 92.8 | |
| PF10237 | 162 | N6-adenineMlase: Probable N6-adenine methyltransfe | 92.02 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 91.95 | |
| PF07757 | 112 | AdoMet_MTase: Predicted AdoMet-dependent methyltra | 91.81 | |
| COG4889 | 1518 | Predicted helicase [General function prediction on | 91.66 | |
| KOG2651 | 476 | consensus rRNA adenine N-6-methyltransferase [RNA | 90.87 | |
| COG4301 | 321 | Uncharacterized conserved protein [Function unknow | 90.87 | |
| PF05050 | 167 | Methyltransf_21: Methyltransferase FkbM domain; In | 89.91 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 89.56 | |
| PF07279 | 218 | DUF1442: Protein of unknown function (DUF1442); In | 88.68 | |
| KOG3350 | 217 | consensus Uncharacterized conserved protein [Funct | 88.58 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 88.55 | |
| PF03686 | 127 | UPF0146: Uncharacterised protein family (UPF0146); | 87.46 | |
| PRK07102 | 243 | short chain dehydrogenase; Provisional | 87.14 | |
| PRK07523 | 255 | gluconate 5-dehydrogenase; Provisional | 86.55 | |
| PF02086 | 260 | MethyltransfD12: D12 class N6 adenine-specific DNA | 86.51 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 85.42 | |
| KOG2920 | 282 | consensus Predicted methyltransferase [General fun | 85.35 | |
| PRK12384 | 259 | sorbitol-6-phosphate dehydrogenase; Provisional | 85.15 | |
| PRK08251 | 248 | short chain dehydrogenase; Provisional | 84.94 | |
| KOG1201 | 300 | consensus Hydroxysteroid 17-beta dehydrogenase 11 | 84.8 | |
| PRK06124 | 256 | gluconate 5-dehydrogenase; Provisional | 84.65 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 84.47 | |
| COG0863 | 302 | DNA modification methylase [DNA replication, recom | 84.3 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 83.93 | |
| PRK06940 | 275 | short chain dehydrogenase; Provisional | 83.86 | |
| PRK12826 | 251 | 3-ketoacyl-(acyl-carrier-protein) reductase; Revie | 83.7 | |
| KOG0024 | 354 | consensus Sorbitol dehydrogenase [Secondary metabo | 83.28 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 83.03 | |
| PRK07533 | 258 | enoyl-(acyl carrier protein) reductase; Provisiona | 82.98 | |
| COG2961 | 279 | ComJ Protein involved in catabolism of external DN | 82.44 | |
| PRK08945 | 247 | putative oxoacyl-(acyl carrier protein) reductase; | 82.44 | |
| PF04378 | 245 | RsmJ: Ribosomal RNA small subunit methyltransferas | 82.2 | |
| PRK07666 | 239 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 82.08 | |
| PRK06949 | 258 | short chain dehydrogenase; Provisional | 81.55 | |
| PRK06125 | 259 | short chain dehydrogenase; Provisional | 81.49 | |
| PRK08213 | 259 | gluconate 5-dehydrogenase; Provisional | 81.46 | |
| PRK05599 | 246 | hypothetical protein; Provisional | 80.81 | |
| PRK08085 | 254 | gluconate 5-dehydrogenase; Provisional | 80.45 | |
| KOG2782 | 303 | consensus Putative SAM dependent methyltransferase | 80.44 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 80.39 | |
| PRK08594 | 257 | enoyl-(acyl carrier protein) reductase; Provisiona | 80.3 | |
| PRK06079 | 252 | enoyl-(acyl carrier protein) reductase; Provisiona | 80.25 |
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-45 Score=333.50 Aligned_cols=250 Identities=34% Similarity=0.510 Sum_probs=212.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhhhccccccCCCCCCCccchHHHHHHHHHhhcCCCCCcccccccCCcccccC-ChhHHH
Q 020573 56 PPKYSATLSDLKKWHNWAKALASSVRSTFADSDNGPDSSILFRELNWLVEDSLEDPSLIPQLGFQNNSQSVRL-RIGLDE 134 (324)
Q Consensus 56 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ll~~~~~~~~~~~~l~~~~~~~~~~l-~~~~~~ 134 (324)
.|.|.++.+.|..|..|+.....+...+ ......|+..++++..-.... +.. .+.++ ...++.
T Consensus 26 ~p~hat~~sal~~~~~W~~~l~~~~~e~------------~k~~~~~i~shvL~~Kf~si~-ds~---~~~pl~~~ql~~ 89 (328)
T KOG2904|consen 26 TPSHATSLSALELLLPWTRTLEQAGEES------------SKLSYKWIVSHVLPDKFWSIE-DSI---VDDPLVILQLES 89 (328)
T ss_pred CCccCccchhhHhhchHHHHHHHhcCch------------hhhhhHHHHHhhhhhhhcccc-chh---hccccchhHHHH
Confidence 5888999999999999997664432221 125678999999886621111 111 12234 446788
Q ss_pred HHHHHHHHHhcCCCceeEEecccccCeeeeeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHH
Q 020573 135 LYGLWKQRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIA 214 (324)
Q Consensus 135 ~~~~~~~r~~~~~pl~yi~g~~~f~~l~~~v~~~vliPrp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la 214 (324)
.++.|.+|+. +.|+|||+|+++|.++.+.+.++|||||||||.+|+++.+.+ .+.....+..|||+|||||+|++.++
T Consensus 90 i~~~~~~R~~-r~PlQYIlg~~~F~~l~l~~~pgVlIPRpETEE~V~~Vid~~-~~~~~~~~~~ildlgtGSGaIslsll 167 (328)
T KOG2904|consen 90 IRWACLQRYK-RMPLQYILGSQPFGDLDLVCKPGVLIPRPETEEWVEAVIDAL-NNSEHSKHTHILDLGTGSGAISLSLL 167 (328)
T ss_pred HHHHHHHHHh-cCChhheeccCccCCceEEecCCeeecCccHHHHHHHHHHHH-hhhhhcccceEEEecCCccHHHHHHH
Confidence 8888888875 899999999999999999999999999999999999999988 55445556689999999999999999
Q ss_pred HHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEE----EcccccccccCCCCeeEEEEcCCCCCCCCcccchhhhh
Q 020573 215 RVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIR----QGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVG 290 (324)
Q Consensus 215 ~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~----~gD~~~~l~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~ 290 (324)
..+ +++.|+|+|.|+.|+.+|.+|++++++.+++.++ ++|++++.+.+.+++|++|||||||+.+|+..+++||+
T Consensus 168 ~~L-~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~ 246 (328)
T KOG2904|consen 168 HGL-PQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVR 246 (328)
T ss_pred hcC-CCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEEecCCCcccccchhhcCchhe
Confidence 998 6899999999999999999999999999999888 67887776666789999999999999999999999999
Q ss_pred cccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 291 KHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 291 ~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
.|||..||+||.+|++.+.+++.-|.++|+|||.
T Consensus 247 ~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~ 280 (328)
T KOG2904|consen 247 LYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGF 280 (328)
T ss_pred ecCchhhhccccchhHHHHHHHHhhHhhcccCCe
Confidence 9999999999999999999999999999999994
|
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-43 Score=328.34 Aligned_cols=232 Identities=34% Similarity=0.453 Sum_probs=192.9
Q ss_pred HHHHHHHHHHHHhhhccccccCCCCCCCccchHHHHHHHHHhhcCCCCCcccccccCCcccccCChhHHHHHHHHHHHHh
Q 020573 65 DLKKWHNWAKALASSVRSTFADSDNGPDSSILFRELNWLVEDSLEDPSLIPQLGFQNNSQSVRLRIGLDELYGLWKQRIE 144 (324)
Q Consensus 65 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ll~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~r~~ 144 (324)
++.+|.+|+.+++...+ . ++ ..+++.++.+.++....... ......+..+..+.+..+..|+.
T Consensus 2 ~~~~~l~~a~~~l~~~~-~---~~--------~~~~~~l~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~rr~ 64 (280)
T COG2890 2 TIRQALREAVSRLSAAG-G---TP--------NLDAELLLLHLLGKPRDQLL-----AHPEAELSEEELERLRELLERRA 64 (280)
T ss_pred cHHHHHHHHHHHHHhcC-C---CC--------cccHHHHHHHHhCCCHHHHh-----hccccccCHHHHHHHHHHHHHHH
Confidence 68899999998888766 1 11 14677788888877543222 11223455455555555556669
Q ss_pred cCCCceeEEecccccCeeeeeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEE
Q 020573 145 KRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSII 224 (324)
Q Consensus 145 ~~~pl~yi~g~~~f~~l~~~v~~~vliPrp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~ 224 (324)
+++|+|||+|..+|+++.|.|+++|++|||+||.+++.++... ... .. +|||+|||||++++++++++ ++++|+
T Consensus 65 ~~~P~~yi~g~~~f~gl~~~v~~~vliPr~dTe~Lve~~l~~~-~~~---~~-~ilDlGTGSG~iai~la~~~-~~~~V~ 138 (280)
T COG2890 65 EGEPVAYILGSAEFGGLRFKVDEGVLIPRPDTELLVEAALALL-LQL---DK-RILDLGTGSGAIAIALAKEG-PDAEVI 138 (280)
T ss_pred CCCCHhHhhccCeecceeeeeCCCceecCCchHHHHHHHHHhh-hhc---CC-cEEEecCChHHHHHHHHhhC-cCCeEE
Confidence 9999999999999999999999999999999999999987433 111 11 79999999999999999996 889999
Q ss_pred EEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCc
Q 020573 225 AVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDG 304 (324)
Q Consensus 225 gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dG 304 (324)
|+|+|+.|+++|++|++.+|+ .++.++++|||+.+. ++||+||+||||++.. ...+.+++.+|||..||++|.||
T Consensus 139 a~Dis~~Al~~A~~Na~~~~l-~~~~~~~~dlf~~~~---~~fDlIVsNPPYip~~-~~~~~~~~~~~EP~~Al~~g~dG 213 (280)
T COG2890 139 AVDISPDALALARENAERNGL-VRVLVVQSDLFEPLR---GKFDLIVSNPPYIPAE-DPELLPEVVRYEPLLALVGGGDG 213 (280)
T ss_pred EEECCHHHHHHHHHHHHHcCC-ccEEEEeeecccccC---CceeEEEeCCCCCCCc-ccccChhhhccCHHHHHccCccH
Confidence 999999999999999999999 568888889998765 4999999999999998 66778888899999999999999
Q ss_pred HHHHHHHHHHHhcccCCCCC
Q 020573 305 LDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 305 l~~~~~il~~a~~~LkpgG~ 324 (324)
++++++|+.++.++|+|||+
T Consensus 214 l~~~~~i~~~a~~~l~~~g~ 233 (280)
T COG2890 214 LEVYRRILGEAPDILKPGGV 233 (280)
T ss_pred HHHHHHHHHhhHHHcCCCcE
Confidence 99999999999999999985
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-42 Score=346.56 Aligned_cols=240 Identities=29% Similarity=0.402 Sum_probs=200.9
Q ss_pred HHHHHHHHHHHhhhccccccCCCCCCCccchHHHHHHHHHhhcCCCCCcccccccCCcccccCChhHHHHHHHHHHHHhc
Q 020573 66 LKKWHNWAKALASSVRSTFADSDNGPDSSILFRELNWLVEDSLEDPSLIPQLGFQNNSQSVRLRIGLDELYGLWKQRIEK 145 (324)
Q Consensus 66 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ll~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~r~~~ 145 (324)
+.++++|+......++.. . ...|++||++++++.+...+.+. .+..++.+..+.++.+.+|+.+
T Consensus 5 ~~~~l~~~~~~l~~~g~~---------~--~~~~a~~Ll~~~l~~~~~~l~~~-----~~~~l~~~~~~~~~~~~~rr~~ 68 (506)
T PRK01544 5 IKQILSDATDKLNKIGIS---------S--PQLEARILLQHVINKPIEYLLIN-----LDEQLNEAEIEAFEKLLERRLK 68 (506)
T ss_pred HHHHHHHHHHHHHHcCCC---------C--HHHHHHHHHHHHHCcCHHHHhhc-----cCCCCCHHHHHHHHHHHHHHHc
Confidence 556777776665544321 1 13689999999999875433311 1235666667778888889899
Q ss_pred CCCceeEEecccccCeeeeeeCCcccccchHHHHHHHHHHHhhhc--------------------CCCCCCCeEEEEcCC
Q 020573 146 RKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRD--------------------NDGLRDGFWVDLGTG 205 (324)
Q Consensus 146 ~~pl~yi~g~~~f~~l~~~v~~~vliPrp~te~lve~l~~~l~~~--------------------~~~~~~~~VLDLGcG 205 (324)
|+|+|||+|+++|+|++|+|+++||||||+||.+|+.+++.+... .....+.+|||+|||
T Consensus 69 ~ePlqYI~G~~~F~g~~f~V~~~VLIPRpeTE~Lve~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VLDlG~G 148 (506)
T PRK01544 69 HEPIAYITGVKEFYSREFIVNKHVLIPRSDTEVLVDVVFQCHSRESGNPEKKQLNPCFRGNDISSNCNDKFLNILELGTG 148 (506)
T ss_pred CCCHHHHhCcCEEcCcEEEeCCCcccCCCcHHHHHHHHHHHhhhccccccccccccccccccccccccCCCCEEEEccCc
Confidence 999999999999999999999999999999999999998765110 001134589999999
Q ss_pred ccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcCCCCCCCCcccc
Q 020573 206 SGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGL 285 (324)
Q Consensus 206 sG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNPPYi~~~~~~~l 285 (324)
||++++.+++.+ ++++|+|+|+|+.|++.|++|++.+++.++++++++|+++.+. .++||+||+||||++..+...+
T Consensus 149 sG~iai~la~~~-p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~--~~~fDlIvsNPPYi~~~~~~~l 225 (506)
T PRK01544 149 SGCIAISLLCEL-PNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIE--KQKFDFIVSNPPYISHSEKSEM 225 (506)
T ss_pred hhHHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCc--CCCccEEEECCCCCCchhhhhc
Confidence 999999999986 7889999999999999999999999998889999999987654 3589999999999999988888
Q ss_pred hhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 286 QVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 286 ~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
+.++..|||..||+||+||++.|+.|++.+.++|+|||+
T Consensus 226 ~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~ 264 (506)
T PRK01544 226 AIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGK 264 (506)
T ss_pred CchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCE
Confidence 899999999999999999999999999999999999995
|
|
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=319.12 Aligned_cols=237 Identities=33% Similarity=0.422 Sum_probs=197.7
Q ss_pred HHHHHHHHHHHhhhccccccCCCCCCCccchHHHHHHHHHhhcCCCCCcccccccCCcccccCChhHHHHHHHHHHHHhc
Q 020573 66 LKKWHNWAKALASSVRSTFADSDNGPDSSILFRELNWLVEDSLEDPSLIPQLGFQNNSQSVRLRIGLDELYGLWKQRIEK 145 (324)
Q Consensus 66 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ll~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~r~~~ 145 (324)
+.++++|+.......+.. +. ...|+++|++++++.+.....+. .+..++.+..+.+..+.+|+.+
T Consensus 3 ~~~~~~~~~~~l~~~~~~--------~~--~~~~a~~ll~~~l~~~~~~~~~~-----~~~~l~~~~~~~~~~~~~~r~~ 67 (284)
T TIGR00536 3 IQEALRWASSALSRAIAR--------EN--PWLEALLLLLHDLGRERDLLLAF-----LTEELTPDEKERIFRLVLRRVK 67 (284)
T ss_pred HHHHHHHHHHHHHHCCCC--------CC--HHHHHHHHHHHHHCcCHHHHhhc-----cCCCCCHHHHHHHHHHHHHHHc
Confidence 456777776665433321 01 13689999999999875443311 1235677667778888888899
Q ss_pred CCCceeEEecccccCeeeeeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEE
Q 020573 146 RKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIA 225 (324)
Q Consensus 146 ~~pl~yi~g~~~f~~l~~~v~~~vliPrp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~g 225 (324)
++|+|||+|.++|++++|.|++++|+|||+||.+++.+++.+ .. .....+|||+|||+|++++.++..+ ++.+|+|
T Consensus 68 ~~pl~yi~g~~~f~g~~f~v~~~vliPr~ete~lv~~~l~~~-~~--~~~~~~vLDlG~GsG~i~l~la~~~-~~~~v~a 143 (284)
T TIGR00536 68 GVPVAYLLGSKEFYGLEFFVNEHVLIPRPETEELVEKALASL-IS--QNPILHILDLGTGSGCIALALAYEF-PNAEVIA 143 (284)
T ss_pred CCCHHHHhCcceEcCeEEEECCCCcCCCCccHHHHHHHHHHh-hh--cCCCCEEEEEeccHhHHHHHHHHHC-CCCEEEE
Confidence 999999999999999999999999999999999999988765 11 1122589999999999999999986 7789999
Q ss_pred EeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcH
Q 020573 226 VDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGL 305 (324)
Q Consensus 226 vDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl 305 (324)
+|+|+++++.|++|++.+++.++++++++|+++.+.. .+||+||+||||++..++..+ +++..|||+.||+||.||+
T Consensus 144 vDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~--~~fDlIvsNPPyi~~~~~~~~-~~~~~~eP~~AL~gg~dgl 220 (284)
T TIGR00536 144 VDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAG--QKIDIIVSNPPYIDEEDLADL-PNVVRFEPLLALVGGDDGL 220 (284)
T ss_pred EECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcC--CCccEEEECCCCCCcchhhcC-CcccccCcHHHhcCCCcHH
Confidence 9999999999999999999977899999999886542 389999999999999887777 6777899999999999999
Q ss_pred HHHHHHHHHHhcccCCCCC
Q 020573 306 DYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 306 ~~~~~il~~a~~~LkpgG~ 324 (324)
++++.+++++.++|+|||+
T Consensus 221 ~~~~~ii~~a~~~L~~gG~ 239 (284)
T TIGR00536 221 NILRQIIELAPDYLKPNGF 239 (284)
T ss_pred HHHHHHHHHHHHhccCCCE
Confidence 9999999999999999995
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-41 Score=316.63 Aligned_cols=248 Identities=30% Similarity=0.399 Sum_probs=204.0
Q ss_pred CCCCCHHHHHHHHHHHHHHhhhcccccc-CCCCCCCccchHHHHHHHHHhhcCCCCCcccccccCCcccccCChhHHHHH
Q 020573 58 KYSATLSDLKKWHNWAKALASSVRSTFA-DSDNGPDSSILFRELNWLVEDSLEDPSLIPQLGFQNNSQSVRLRIGLDELY 136 (324)
Q Consensus 58 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~e~~~ll~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~ 136 (324)
+++..+.++.++.+|+.......+..+. +.++ ...|++||++++++.+...+.+. .+..++.+..+.+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~------~~~~a~~ll~~~l~~~~~~l~~~-----~~~~l~~~~~~~~ 76 (307)
T PRK11805 8 EAVNELHTIRDLLRWAVSRFNAAGLFFGHGTDN------AWDEAVQLVLHALHLPLDIPEPF-----LDARLTPSEKARI 76 (307)
T ss_pred cchhhhhHHHHHHHHHHHHHHhcCCccCCCCCC------HHHHHHHHHHHHHCcCHHHHhhc-----ccCCCCHHHHHHH
Confidence 4456678888999998777654433211 1111 13689999999999875433311 1235666666777
Q ss_pred HHHHHHHh-cCCCceeEEecccccCeeeeeeCCcccccchHHHHHHHHHH-HhhhcCCCCCCCeEEEEcCCccHHHHHHH
Q 020573 137 GLWKQRIE-KRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSD-VLVRDNDGLRDGFWVDLGTGSGAIAIGIA 214 (324)
Q Consensus 137 ~~~~~r~~-~~~pl~yi~g~~~f~~l~~~v~~~vliPrp~te~lve~l~~-~l~~~~~~~~~~~VLDLGcGsG~iai~la 214 (324)
..+.+||. +|+|+|||+|+++|++++|+|+++|||||++|+.+++.++. ++ .. ....+|||+|||+|++++.++
T Consensus 77 ~~~~~rr~~~~~Pl~yi~g~~~F~g~~f~v~~~vlipr~~te~lv~~~l~~~~-~~---~~~~~VLDlG~GsG~iai~la 152 (307)
T PRK11805 77 LELIERRINERIPAAYLTNEAWFCGLEFYVDERVLVPRSPIAELIEDGFAPWL-ED---PPVTRILDLCTGSGCIAIACA 152 (307)
T ss_pred HHHHHHHHHCCccHHHHcCcceEcCcEEEECCCCcCCCCchHHHHHHHHHHHh-cc---CCCCEEEEEechhhHHHHHHH
Confidence 77778886 69999999999999999999999999999999999998765 33 11 112589999999999999999
Q ss_pred HHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcCCCCCCCCcccchhhhhcccc
Q 020573 215 RVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEP 294 (324)
Q Consensus 215 ~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP 294 (324)
+.+ ++.+|+|+|+|+.+++.|++|++.+++.++++++++|+++.++ .++||+||+||||++..++..++.++ +|||
T Consensus 153 ~~~-p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~--~~~fDlIvsNPPyi~~~~~~~l~~~~-~~eP 228 (307)
T PRK11805 153 YAF-PDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALP--GRRYDLIVSNPPYVDAEDMADLPAEY-RHEP 228 (307)
T ss_pred HHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCC--CCCccEEEECCCCCCccchhhcCHhh-ccCc
Confidence 986 7889999999999999999999999998889999999987654 25899999999999998888888888 5999
Q ss_pred cccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 295 RLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 295 ~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
..||+||.+|+++++.+++.+.++|+|||+
T Consensus 229 ~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~ 258 (307)
T PRK11805 229 ELALAAGDDGLDLVRRILAEAPDYLTEDGV 258 (307)
T ss_pred cceeeCCCchHHHHHHHHHHHHHhcCCCCE
Confidence 999999999999999999999999999995
|
|
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-41 Score=312.65 Aligned_cols=242 Identities=31% Similarity=0.415 Sum_probs=196.9
Q ss_pred HHHHHHHHHHHHhhhccccccCCCCCCCccchHHHHHHHHHhhcCCCCCcccccccCCcccccCChhHHHHHHHHHHHHh
Q 020573 65 DLKKWHNWAKALASSVRSTFADSDNGPDSSILFRELNWLVEDSLEDPSLIPQLGFQNNSQSVRLRIGLDELYGLWKQRIE 144 (324)
Q Consensus 65 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ll~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~r~~ 144 (324)
++.++++|+.......+..+. .+.+. ...|++||++++++.+...+.+. .+..++.+..+.+..+.+||.
T Consensus 3 ~~~~~~~~~~~~l~~~~~~~~---~~~~~--~~~~a~~ll~~~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~rr~ 72 (284)
T TIGR03533 3 TIRDFLRWAVSRFNAAGLFFG---HGTDN--AWDEAVYLVLHALHLPLDILEPF-----LDARLTPSEKERILELIERRI 72 (284)
T ss_pred cHHHHHHHHHHHHHhcCCccc---CCCCC--HHHHHHHHHHHHHCcCHHHHhhc-----ccCCCCHHHHHHHHHHHHHHH
Confidence 456677777666554332110 00011 13689999999999875433311 123566666666777777776
Q ss_pred -cCCCceeEEecccccCeeeeeeCCcccccchHHHHHHHHHH-HhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcE
Q 020573 145 -KRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSD-VLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGS 222 (324)
Q Consensus 145 -~~~pl~yi~g~~~f~~l~~~v~~~vliPrp~te~lve~l~~-~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~ 222 (324)
.++|+|||+|+++|++++|.|++++||||++||.+++..+. ++ . ...+.+|||+|||+|++++.+++.. ++.+
T Consensus 73 ~~~~Pl~yi~g~~~f~g~~f~v~~~vlipr~~te~lv~~~l~~~~-~---~~~~~~vLDlG~GsG~i~~~la~~~-~~~~ 147 (284)
T TIGR03533 73 EERIPVAYLTNEAWFAGLEFYVDERVLIPRSPIAELIEDGFAPWL-E---PEPVKRILDLCTGSGCIAIACAYAF-PEAE 147 (284)
T ss_pred hCCCcHHHHcCCCeecCcEEEECCCCccCCCchHHHHHHHHHHHh-c---cCCCCEEEEEeCchhHHHHHHHHHC-CCCE
Confidence 79999999999999999999999999999999999988765 33 1 1234689999999999999999986 7789
Q ss_pred EEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCC
Q 020573 223 IIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGV 302 (324)
Q Consensus 223 V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~ 302 (324)
|+|+|+|+.|++.|++|++.+++.++++++++|+++.+. .++||+||+||||++..++..++.++ .|||+.||+||+
T Consensus 148 v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~--~~~fD~Iv~NPPy~~~~~~~~l~~~~-~~ep~~al~gg~ 224 (284)
T TIGR03533 148 VDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALP--GRKYDLIVSNPPYVDAEDMADLPAEY-HHEPELALASGE 224 (284)
T ss_pred EEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccC--CCCccEEEECCCCCCccchhhCCHhh-hcCHHHHhcCCC
Confidence 999999999999999999999998889999999987653 25899999999999999888888888 699999999999
Q ss_pred CcHHHHHHHHHHHhcccCCCCC
Q 020573 303 DGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 303 dGl~~~~~il~~a~~~LkpgG~ 324 (324)
+|++.++.+++.+.++|+|||+
T Consensus 225 dGl~~~~~il~~a~~~L~~gG~ 246 (284)
T TIGR03533 225 DGLDLVRRILAEAADHLNENGV 246 (284)
T ss_pred cHHHHHHHHHHHHHHhcCCCCE
Confidence 9999999999999999999995
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=315.18 Aligned_cols=213 Identities=31% Similarity=0.428 Sum_probs=182.7
Q ss_pred HHHHHHHHHhhcCCCCCcccccccCCcccccCChhHHHHHHHHHHHHhcCCCceeEEecccccCeeeeeeCCcccccchH
Q 020573 97 FRELNWLVEDSLEDPSLIPQLGFQNNSQSVRLRIGLDELYGLWKQRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPET 176 (324)
Q Consensus 97 ~~e~~~ll~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~r~~~~~pl~yi~g~~~f~~l~~~v~~~vliPrp~t 176 (324)
..|+++|++++++.++..+.+. .+..++.+..+.+..+.+||.+|+|+|||+|.++|+|++|.|++++|+|||+|
T Consensus 164 ~~dA~~LL~~~l~~~r~~l~~~-----~~~~l~~~~~~~~~~~v~RR~~gePlqYIlG~~~F~G~~f~V~p~vLIPRpeT 238 (423)
T PRK14966 164 KNEARMLLQYASEYTRVQLLTR-----GGEEMPDEVRQRADRLAQRRLNGEPVAYILGVREFYGRRFAVNPNVLIPRPET 238 (423)
T ss_pred HHHHHHHHHHHHCcCHHHHhhC-----CcccCCHHHHHHHHHHHHHHHcCCCceeEeeeeeecCcEEEeCCCccCCCccH
Confidence 3689999999999875433311 12356777777788888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccc
Q 020573 177 ELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSW 256 (324)
Q Consensus 177 e~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~ 256 (324)
|.+++.+++.+ . ++.+|||+|||||++++.+++.. ++.+|+|+|+|+.|++.|++|++.++. +++++++|+
T Consensus 239 E~LVe~aL~~l-~-----~~~rVLDLGcGSG~IaiaLA~~~-p~a~VtAVDiS~~ALe~AreNa~~~g~--rV~fi~gDl 309 (423)
T PRK14966 239 EHLVEAVLARL-P-----ENGRVWDLGTGSGAVAVTVALER-PDAFVRASDISPPALETARKNAADLGA--RVEFAHGSW 309 (423)
T ss_pred HHHHHHhhhcc-C-----CCCEEEEEeChhhHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCC--cEEEEEcch
Confidence 99999998765 1 24589999999999999999875 788999999999999999999998875 699999999
Q ss_pred ccccccCCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 257 FGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 257 ~~~l~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
++......++||+|||||||++..+...++.++ +|||+.||+||+||+++++++++.+.++|+|||+
T Consensus 310 ~e~~l~~~~~FDLIVSNPPYI~~~e~~l~~~~v-~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~ 376 (423)
T PRK14966 310 FDTDMPSEGKWDIIVSNPPYIENGDKHLLQGDL-RFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGF 376 (423)
T ss_pred hccccccCCCccEEEECCCCCCcchhhhcchhh-hcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcE
Confidence 875322235899999999999988765555555 7999999999999999999999999999999995
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=286.44 Aligned_cols=197 Identities=31% Similarity=0.487 Sum_probs=172.7
Q ss_pred HHHHHHHHHhhcCCCCCcccccccCCcccccCChhHHHHHHHHHHHHhcCCCceeEEecccccCeeeeeeCCcccccchH
Q 020573 97 FRELNWLVEDSLEDPSLIPQLGFQNNSQSVRLRIGLDELYGLWKQRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPET 176 (324)
Q Consensus 97 ~~e~~~ll~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~r~~~~~pl~yi~g~~~f~~l~~~v~~~vliPrp~t 176 (324)
..|++||++++.. ...++.|.+||.+|+|+|||+|.++|++++|.+++++|+||++|
T Consensus 14 ~~~a~~l~~~~~~-----------------------~~~~~~~~~rr~~~~Pl~yi~g~~~f~g~~~~v~~~vf~pr~~T 70 (251)
T TIGR03704 14 EDEAALLVDAART-----------------------PGELAAMVDRRVAGLPLEHVLGWAEFCGLRIAVDPGVFVPRRRT 70 (251)
T ss_pred HHHHHHHHHhccC-----------------------HHHHHHHHHHHHcCCCHHHhcccCeEcCeEEEECCCCcCCCccH
Confidence 4899999999731 24456677788899999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccc
Q 020573 177 ELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSW 256 (324)
Q Consensus 177 e~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~ 256 (324)
+.+++.++.++ .. .....+|||+|||+|++++.+++.+ +..+|+|+|+|+.|++.|++|++.++ ++++++|+
T Consensus 71 e~Lv~~~l~~~-~~--~~~~~~vLDlg~GsG~i~l~la~~~-~~~~v~~vDis~~al~~A~~N~~~~~----~~~~~~D~ 142 (251)
T TIGR03704 71 EFLVDEAAALA-RP--RSGTLVVVDLCCGSGAVGAALAAAL-DGIELHAADIDPAAVRCARRNLADAG----GTVHEGDL 142 (251)
T ss_pred HHHHHHHHHhh-cc--cCCCCEEEEecCchHHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcC----CEEEEeec
Confidence 99999998865 21 1123589999999999999999886 66799999999999999999999876 47899999
Q ss_pred cccccc-CCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 257 FGKLKD-VEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 257 ~~~l~~-~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
++.+.. ..++||+||+||||++.+++..+++++..|||..||+||.||++.++.+++.+.++|||||+
T Consensus 143 ~~~l~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~ 211 (251)
T TIGR03704 143 YDALPTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGH 211 (251)
T ss_pred hhhcchhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCE
Confidence 876532 23589999999999999988889999999999999999999999999999999999999995
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-35 Score=274.12 Aligned_cols=231 Identities=37% Similarity=0.504 Sum_probs=192.6
Q ss_pred HHHHHHHHHHHHhhhccccccCCCCCCCccchHHHHHHHHHhhcCCCCCcccccccCCcccccCChhHHHHHHHHHHHHh
Q 020573 65 DLKKWHNWAKALASSVRSTFADSDNGPDSSILFRELNWLVEDSLEDPSLIPQLGFQNNSQSVRLRIGLDELYGLWKQRIE 144 (324)
Q Consensus 65 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ll~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~r~~ 144 (324)
++.++.+|+...... ...++++|++++++.+.....+. .+..++.+..+.+..+..|+.
T Consensus 3 ~~~~~~~~~~~~l~~----------------~~~~~~~ll~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 61 (275)
T PRK09328 3 TIAEALREATARLAS----------------PRLDAELLLAHVLGLSRTDLLLN-----PEEELTPEELERFRALVARRA 61 (275)
T ss_pred cHHHHHHHHHHHHhC----------------cHHHHHHHHHHHHCcCHHHHhhc-----ccCCCCHHHHHHHHHHHHHHH
Confidence 356777887665431 13689999999999875443321 122345444455666667778
Q ss_pred cCCCceeEEecccccCeeeeeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEE
Q 020573 145 KRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSII 224 (324)
Q Consensus 145 ~~~pl~yi~g~~~f~~l~~~v~~~vliPrp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~ 224 (324)
+++|++|++|..+|++..|.+++++|+||++||.+++.+.... ...++.+|||+|||+|++++.++..+ ++.+|+
T Consensus 62 ~~~p~~~i~g~~~f~~~~~~~~~~~lipr~~te~l~~~~~~~~----~~~~~~~vLDiG~GsG~~~~~la~~~-~~~~v~ 136 (275)
T PRK09328 62 AGEPLQYILGEAEFWGLDFKVSPGVLIPRPETEELVEWALEAL----LLKEPLRVLDLGTGSGAIALALAKER-PDAEVT 136 (275)
T ss_pred cCCCHHHHceeceEcCcEEEECCCceeCCCCcHHHHHHHHHhc----cccCCCEEEEEcCcHHHHHHHHHHHC-CCCEEE
Confidence 9999999999999999999999999999999999999988654 22345689999999999999999986 788999
Q ss_pred EEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCc
Q 020573 225 AVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDG 304 (324)
Q Consensus 225 gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dG 304 (324)
|+|+|+.+++.|++|++ ++...++.++.+|+++.+. .++||+||+||||++...+..+.+++..|||..|+++|.+|
T Consensus 137 ~iDis~~~l~~a~~n~~-~~~~~~i~~~~~d~~~~~~--~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g 213 (275)
T PRK09328 137 AVDISPEALAVARRNAK-HGLGARVEFLQGDWFEPLP--GGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDG 213 (275)
T ss_pred EEECCHHHHHHHHHHHH-hCCCCcEEEEEccccCcCC--CCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCH
Confidence 99999999999999998 4445579999999987654 36899999999999998888888999889999999999999
Q ss_pred HHHHHHHHHHHhcccCCCCC
Q 020573 305 LDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 305 l~~~~~il~~a~~~LkpgG~ 324 (324)
++.++.+++++.++|||||+
T Consensus 214 ~~~~~~~~~~~~~~Lk~gG~ 233 (275)
T PRK09328 214 LDFYRRIIEQAPRYLKPGGW 233 (275)
T ss_pred HHHHHHHHHHHHHhcccCCE
Confidence 99999999999999999995
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-31 Score=281.14 Aligned_cols=168 Identities=24% Similarity=0.290 Sum_probs=146.0
Q ss_pred EecccccCeeeeeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHH
Q 020573 153 VGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLA 232 (324)
Q Consensus 153 ~g~~~f~~l~~~v~~~vliPrp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~a 232 (324)
.|.++|++++|.|.|+||||||+||.+++. +... . ....++.+|||+|||||++++.+++.+ ++.+|+|+|+|++|
T Consensus 79 ~G~~~F~~l~~~V~p~VLIPRpeTE~lve~-L~~~-~-~~~~~~~~VLDlG~GSG~Iai~La~~~-~~~~v~avDis~~A 154 (1082)
T PLN02672 79 EGFRNRKKLTMMEIPSIFIPEDWSFTFYEG-LNRH-P-DSIFRDKTVAELGCGNGWISIAIAEKW-LPSKVYGLDINPRA 154 (1082)
T ss_pred CCeEEecCCceeeCCCcccCchhHHHHHHH-HHhc-c-cccCCCCEEEEEecchHHHHHHHHHHC-CCCEEEEEECCHHH
Confidence 488899999999999999999999999998 4332 1 111235689999999999999999986 77899999999999
Q ss_pred HHHHHHHHHHcCCC---------------CcEEEEEcccccccccCCCCeeEEEEcCCCCCCCCcccchhhhhcccc---
Q 020573 233 AAVAAFNAQRYGLQ---------------DIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEP--- 294 (324)
Q Consensus 233 l~~Ar~N~~~~gl~---------------~rv~~~~gD~~~~l~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP--- 294 (324)
+++|++|++.++++ ++++++++|+++.+.....+||+||||||||+..++..|+++|..|||
T Consensus 155 l~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~ 234 (1082)
T PLN02672 155 VKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCRDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEF 234 (1082)
T ss_pred HHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhccccCCceEEEEECCCcCCCcchhhcChhhhhcccccc
Confidence 99999999987542 579999999998764322479999999999999999999999988875
Q ss_pred ------cccccC---CCCcHHHHHHHHHHHhcccCCCCC
Q 020573 295 ------RLALDG---GVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 295 ------~~aL~g---g~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
..||+| |.|||++|++|++++.++|+|||+
T Consensus 235 ~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~ 273 (1082)
T PLN02672 235 LYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGI 273 (1082)
T ss_pred ccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCE
Confidence 689987 499999999999999999999995
|
|
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-30 Score=239.02 Aligned_cols=212 Identities=38% Similarity=0.564 Sum_probs=182.1
Q ss_pred HHHHHHHhhcCCCCCcccccccCCcccccCChhHHHHHHHHHHHHhcCCCceeEEecccccCeeeeeeCCcccccchHHH
Q 020573 99 ELNWLVEDSLEDPSLIPQLGFQNNSQSVRLRIGLDELYGLWKQRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETEL 178 (324)
Q Consensus 99 e~~~ll~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~r~~~~~pl~yi~g~~~f~~l~~~v~~~vliPrp~te~ 178 (324)
|+++|+++.++........+ ....+..+..+.+..+.+++..++|++|++|..+|++..+.+++++++|+++++.
T Consensus 1 ~~~~~l~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 75 (251)
T TIGR03534 1 DAELLLAHVLGKDRTDLLLH-----PEKELTPEELARFEALLARRAKGEPVAYILGEREFYGLDFKVSPGVLIPRPDTEE 75 (251)
T ss_pred CHHHHHHHHHCcCHHHHhhc-----ccCCCCHHHHHHHHHHHHHHHcCCCHHHHcccceEeceEEEECCCcccCCCChHH
Confidence 46789999998763222111 1234556566667777778889999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccc
Q 020573 179 MVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFG 258 (324)
Q Consensus 179 lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~ 258 (324)
+++.+++.+ . ..+.+|||+|||+|.+++.+++.+ ++.+|+|+|+++.+++.|++|++.+++. +++++++|+++
T Consensus 76 l~~~~l~~~-~----~~~~~ilDig~G~G~~~~~l~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~~~d~~~ 148 (251)
T TIGR03534 76 LVEAALERL-K----KGPLRVLDLGTGSGAIALALAKER-PDARVTAVDISPEALAVARKNAARLGLD-NVTFLQSDWFE 148 (251)
T ss_pred HHHHHHHhc-c----cCCCeEEEEeCcHhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchhc
Confidence 999988876 2 134589999999999999999986 7789999999999999999999999886 59999999987
Q ss_pred ccccCCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 259 KLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 259 ~l~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
.+. .++||+|++||||+...+...+..++..|||..++.+|.+|++.++.+++.+.++|+|||+
T Consensus 149 ~~~--~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~ 212 (251)
T TIGR03534 149 PLP--GGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGW 212 (251)
T ss_pred cCc--CCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCE
Confidence 553 3689999999999998888888889989999999999999999999999999999999995
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.89 E-value=1e-22 Score=177.03 Aligned_cols=131 Identities=38% Similarity=0.614 Sum_probs=111.3
Q ss_pred eeeeeeCCccccc---chHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Q 020573 161 LVLSVEEGVFIPR---PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAA 237 (324)
Q Consensus 161 l~~~v~~~vliPr---p~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar 237 (324)
++|...+|||.|+ +.|++|++.+... ...+|||+|||+|++++.+++.. ++.+|+++|+|+.|++.|+
T Consensus 2 ~~~~~~~gvFs~~~~d~~t~lL~~~l~~~--------~~~~vLDlG~G~G~i~~~la~~~-~~~~v~~vDi~~~a~~~a~ 72 (170)
T PF05175_consen 2 LEFITHPGVFSPPRLDAGTRLLLDNLPKH--------KGGRVLDLGCGSGVISLALAKRG-PDAKVTAVDINPDALELAK 72 (170)
T ss_dssp EEEEEETTSTTTTSHHHHHHHHHHHHHHH--------TTCEEEEETSTTSHHHHHHHHTS-TCEEEEEEESBHHHHHHHH
T ss_pred EEEEECCCeeCCCCCCHHHHHHHHHHhhc--------cCCeEEEecCChHHHHHHHHHhC-CCCEEEEEcCCHHHHHHHH
Confidence 5788999999964 5788888877653 25689999999999999999985 7889999999999999999
Q ss_pred HHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhc
Q 020573 238 FNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTAS 317 (324)
Q Consensus 238 ~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~ 317 (324)
+|++.+++.+ ++++.+|+++.+. .++||+|++|||+. .++.+|++.++.++++|.+
T Consensus 73 ~n~~~n~~~~-v~~~~~d~~~~~~--~~~fD~Iv~NPP~~---------------------~~~~~~~~~~~~~i~~a~~ 128 (170)
T PF05175_consen 73 RNAERNGLEN-VEVVQSDLFEALP--DGKFDLIVSNPPFH---------------------AGGDDGLDLLRDFIEQARR 128 (170)
T ss_dssp HHHHHTTCTT-EEEEESSTTTTCC--TTCEEEEEE---SB---------------------TTSHCHHHHHHHHHHHHHH
T ss_pred HHHHhcCccc-ccccccccccccc--ccceeEEEEccchh---------------------cccccchhhHHHHHHHHHH
Confidence 9999999988 9999999998766 37999999999953 2345688999999999999
Q ss_pred ccCCCCC
Q 020573 318 MLKPDKW 324 (324)
Q Consensus 318 ~LkpgG~ 324 (324)
+|||||.
T Consensus 129 ~Lk~~G~ 135 (170)
T PF05175_consen 129 YLKPGGR 135 (170)
T ss_dssp HEEEEEE
T ss_pred hccCCCE
Confidence 9999994
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.3e-21 Score=173.05 Aligned_cols=150 Identities=32% Similarity=0.461 Sum_probs=125.7
Q ss_pred cCeeeeeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 020573 159 RDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF 238 (324)
Q Consensus 159 ~~l~~~v~~~vliPrp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~ 238 (324)
-+..+.+.+++|.|+.+++.+++.+...- ..++.+|||+|||+|.+++.+++. ...+|+++|+|+.+++.|++
T Consensus 5 ~~~~~~~~~g~~~p~~ds~~l~~~l~~~~-----~~~~~~vLDlGcG~G~~~~~la~~--~~~~v~~vD~s~~~l~~a~~ 77 (223)
T PRK14967 5 PPDALLRAPGVYRPQEDTQLLADALAAEG-----LGPGRRVLDLCTGSGALAVAAAAA--GAGSVTAVDISRRAVRSARL 77 (223)
T ss_pred CCceeecCCCCcCCCCcHHHHHHHHHhcc-----cCCCCeEEEecCCHHHHHHHHHHc--CCCeEEEEECCHHHHHHHHH
Confidence 36788999999999999999888765431 224569999999999999999885 33599999999999999999
Q ss_pred HHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcc
Q 020573 239 NAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASM 318 (324)
Q Consensus 239 N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~ 318 (324)
|++.+++ ++.++++|+.+.+. .++||+|++||||++..... .....|..++.++.+|...+..+++++.++
T Consensus 78 n~~~~~~--~~~~~~~d~~~~~~--~~~fD~Vi~npPy~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~ 148 (223)
T PRK14967 78 NALLAGV--DVDVRRGDWARAVE--FRPFDVVVSNPPYVPAPPDA-----PPSRGPARAWDAGPDGRAVLDRLCDAAPAL 148 (223)
T ss_pred HHHHhCC--eeEEEECchhhhcc--CCCeeEEEECCCCCCCCccc-----ccccChhHhhhCCCcHHHHHHHHHHHHHHh
Confidence 9998886 38999999987543 36899999999999765432 224567788889999999999999999999
Q ss_pred cCCCCC
Q 020573 319 LKPDKW 324 (324)
Q Consensus 319 LkpgG~ 324 (324)
||+||.
T Consensus 149 Lk~gG~ 154 (223)
T PRK14967 149 LAPGGS 154 (223)
T ss_pred cCCCcE
Confidence 999995
|
|
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.1e-20 Score=167.64 Aligned_cols=146 Identities=23% Similarity=0.343 Sum_probs=116.8
Q ss_pred CeeeeeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHH
Q 020573 160 DLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFN 239 (324)
Q Consensus 160 ~l~~~v~~~vliPrp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N 239 (324)
.+.+...+.++-..-++-+|..++.. ...++|||+|||+|.+++.+|++. ++++|+|||+++++.+.|++|
T Consensus 17 ~~~I~q~~~~~~~~~DaiLL~~~~~~--------~~~~~IlDlGaG~G~l~L~la~r~-~~a~I~~VEiq~~~a~~A~~n 87 (248)
T COG4123 17 QFFIIQDRCGFRYGTDAILLAAFAPV--------PKKGRILDLGAGNGALGLLLAQRT-EKAKIVGVEIQEEAAEMAQRN 87 (248)
T ss_pred ceEEEeCCCccccccHHHHHHhhccc--------ccCCeEEEecCCcCHHHHHHhccC-CCCcEEEEEeCHHHHHHHHHH
Confidence 45556666777777777776665432 126799999999999999999986 669999999999999999999
Q ss_pred HHHcCCCCcEEEEEcccccccccCC-CCeeEEEEcCCCCCCCCc--ccchhhhhcccccccccCCCCcHHHHHHHHHHHh
Q 020573 240 AQRYGLQDIIEIRQGSWFGKLKDVE-GKLSGVVSNPPYIPSDDI--SGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTA 316 (324)
Q Consensus 240 ~~~~gl~~rv~~~~gD~~~~l~~~~-~~fDlIVsNPPYi~~~~~--~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~ 316 (324)
++.+++.+|++++++|+.+..+... .+||+|||||||-..... ..-..+..+||...-+ ..+++.|.
T Consensus 88 v~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~l----------e~~i~~a~ 157 (248)
T COG4123 88 VALNPLEERIQVIEADIKEFLKALVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDL----------EDLIRAAA 157 (248)
T ss_pred HHhCcchhceeEehhhHHHhhhcccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCH----------HHHHHHHH
Confidence 9999999999999999987654432 369999999999987765 2334555677766543 48999999
Q ss_pred cccCCCCC
Q 020573 317 SMLKPDKW 324 (324)
Q Consensus 317 ~~LkpgG~ 324 (324)
++||+||.
T Consensus 158 ~~lk~~G~ 165 (248)
T COG4123 158 KLLKPGGR 165 (248)
T ss_pred HHccCCCE
Confidence 99999994
|
|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.1e-19 Score=155.25 Aligned_cols=135 Identities=24% Similarity=0.402 Sum_probs=109.2
Q ss_pred cccccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCc
Q 020573 169 VFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDI 248 (324)
Q Consensus 169 vliPrp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~r 248 (324)
|++||++|.++.+.+.. . ++.+|||+|||+|.+++.+++.. + +|+|+|+|+++++.|++|++.++. +
T Consensus 1 ~~~~~~d~~~l~~~l~~-~-------~~~~vLdlG~G~G~~~~~l~~~~-~--~v~~vD~s~~~~~~a~~~~~~~~~--~ 67 (179)
T TIGR00537 1 VYEPAEDSLLLEANLRE-L-------KPDDVLEIGAGTGLVAIRLKGKG-K--CILTTDINPFAVKELRENAKLNNV--G 67 (179)
T ss_pred CCCCCccHHHHHHHHHh-c-------CCCeEEEeCCChhHHHHHHHhcC-C--EEEEEECCHHHHHHHHHHHHHcCC--c
Confidence 58999999776665432 2 24689999999999999999863 3 899999999999999999998876 4
Q ss_pred EEEEEcccccccccCCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 249 IEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 249 v~~~~gD~~~~l~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
++++.+|+++.. .++||+|++||||++..+.... ......++.+|.+|.+.++.+++++.++|||||.
T Consensus 68 ~~~~~~d~~~~~---~~~fD~Vi~n~p~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~ 135 (179)
T TIGR00537 68 LDVVMTDLFKGV---RGKFDVILFNPPYLPLEDDLRR-----GDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGR 135 (179)
T ss_pred eEEEEccccccc---CCcccEEEECCCCCCCcchhcc-----cchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCE
Confidence 899999998753 2589999999999866532111 1223457778999999999999999999999994
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.7e-19 Score=152.25 Aligned_cols=147 Identities=25% Similarity=0.411 Sum_probs=125.4
Q ss_pred CcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCC
Q 020573 168 GVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQD 247 (324)
Q Consensus 168 ~vliPrp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~ 247 (324)
.|+-|-.+|-++++.+.... .+........++|+|||||+++..+++..+++....++|+|+.|++..++.++.|+..
T Consensus 17 dVYEPaEDTFlLlDaLekd~-~eL~~~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~- 94 (209)
T KOG3191|consen 17 DVYEPAEDTFLLLDALEKDA-AELKGHNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVH- 94 (209)
T ss_pred hccCccchhhHHHHHHHHHH-HHHhhcCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCc-
Confidence 78899999999999887655 3333333668999999999999999999989999999999999999999999999864
Q ss_pred cEEEEEcccccccccCCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 248 IIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 248 rv~~~~gD~~~~l~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
+..++.|+.+.+.. +++|+++.||||+++.+... ..+--..|+.||.+|.+.+.+++.+....|.|.|+
T Consensus 95 -~~~V~tdl~~~l~~--~~VDvLvfNPPYVpt~~~~i-----~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv 163 (209)
T KOG3191|consen 95 -IDVVRTDLLSGLRN--ESVDVLVFNPPYVPTSDEEI-----GDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGV 163 (209)
T ss_pred -cceeehhHHhhhcc--CCccEEEECCCcCcCCcccc-----hhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCce
Confidence 89999999998876 79999999999999876322 12223457889999999999999999999999996
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.7e-18 Score=165.33 Aligned_cols=133 Identities=19% Similarity=0.289 Sum_probs=105.6
Q ss_pred CeeeeeeCCccccc---chHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHH
Q 020573 160 DLVLSVEEGVFIPR---PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVA 236 (324)
Q Consensus 160 ~l~~~v~~~vliPr---p~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~A 236 (324)
++++...+|||... ..|+++++.+.. ...++|||+|||+|.+++.+++.. |+.+|+++|+|+.|++.|
T Consensus 198 ~~~~~~~~gVFs~~~LD~GtrllL~~lp~--------~~~~~VLDLGCGtGvi~i~la~~~-P~~~V~~vD~S~~Av~~A 268 (378)
T PRK15001 198 DWTIHNHANVFSRTGLDIGARFFMQHLPE--------NLEGEIVDLGCGNGVIGLTLLDKN-PQAKVVFVDESPMAVASS 268 (378)
T ss_pred eEEEEecCCccCCCCcChHHHHHHHhCCc--------ccCCeEEEEeccccHHHHHHHHhC-CCCEEEEEECCHHHHHHH
Confidence 56777889999984 457777665432 123589999999999999999985 889999999999999999
Q ss_pred HHHHHHcCCC--CcEEEEEcccccccccCCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHH
Q 020573 237 AFNAQRYGLQ--DIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNG 314 (324)
Q Consensus 237 r~N~~~~gl~--~rv~~~~gD~~~~l~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~ 314 (324)
++|++.++.. .+++++.+|.++.+.. ++||+|+|||||+....+ . -+...+++..
T Consensus 269 ~~N~~~n~~~~~~~v~~~~~D~l~~~~~--~~fDlIlsNPPfh~~~~~---~------------------~~ia~~l~~~ 325 (378)
T PRK15001 269 RLNVETNMPEALDRCEFMINNALSGVEP--FRFNAVLCNPPFHQQHAL---T------------------DNVAWEMFHH 325 (378)
T ss_pred HHHHHHcCcccCceEEEEEccccccCCC--CCEEEEEECcCcccCccC---C------------------HHHHHHHHHH
Confidence 9999988754 3689999998875532 589999999999853221 0 1234578999
Q ss_pred HhcccCCCCC
Q 020573 315 TASMLKPDKW 324 (324)
Q Consensus 315 a~~~LkpgG~ 324 (324)
+.++|||||.
T Consensus 326 a~~~LkpGG~ 335 (378)
T PRK15001 326 ARRCLKINGE 335 (378)
T ss_pred HHHhcccCCE
Confidence 9999999994
|
|
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.1e-18 Score=141.19 Aligned_cols=108 Identities=28% Similarity=0.366 Sum_probs=86.3
Q ss_pred CeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc-cCCCCeeEEEEcCC
Q 020573 197 GFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK-DVEGKLSGVVSNPP 275 (324)
Q Consensus 197 ~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~-~~~~~fDlIVsNPP 275 (324)
.+|||+|||+|.+++.+++.. ..+++|+|+++.+++.|+.|+..+++.++++++++|+++... ...++||+|++|||
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP 79 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPP 79 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--S
T ss_pred CEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCC
Confidence 489999999999999999973 689999999999999999999999998889999999987652 22579999999999
Q ss_pred CCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 276 YIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 276 Yi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
|.+........ -+.+..+++.+.++|||||+
T Consensus 80 ~~~~~~~~~~~------------------~~~~~~~~~~~~~~L~~gG~ 110 (117)
T PF13659_consen 80 YGPRSGDKAAL------------------RRLYSRFLEAAARLLKPGGV 110 (117)
T ss_dssp TTSBTT----G------------------GCHHHHHHHHHHHHEEEEEE
T ss_pred Cccccccchhh------------------HHHHHHHHHHHHHHcCCCeE
Confidence 98643211100 11566899999999999984
|
... |
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.9e-18 Score=158.43 Aligned_cols=130 Identities=24% Similarity=0.412 Sum_probs=108.5
Q ss_pred CeeeeeeCCccccc---chHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHH
Q 020573 160 DLVLSVEEGVFIPR---PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVA 236 (324)
Q Consensus 160 ~l~~~v~~~vliPr---p~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~A 236 (324)
++.|.-.+|||.-. ..|++|++.+.... .++|||+|||.|.+++.+++.. |+.+|+.+|+|..|++.|
T Consensus 128 ~~~~~t~pGVFS~~~lD~GS~lLl~~l~~~~--------~~~vlDlGCG~Gvlg~~la~~~-p~~~vtmvDvn~~Av~~a 198 (300)
T COG2813 128 ELTFKTLPGVFSRDKLDKGSRLLLETLPPDL--------GGKVLDLGCGYGVLGLVLAKKS-PQAKLTLVDVNARAVESA 198 (300)
T ss_pred ceEEEeCCCCCcCCCcChHHHHHHHhCCccC--------CCcEEEeCCCccHHHHHHHHhC-CCCeEEEEecCHHHHHHH
Confidence 57788899999963 66888887655422 3489999999999999999986 899999999999999999
Q ss_pred HHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHh
Q 020573 237 AFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTA 316 (324)
Q Consensus 237 r~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~ 316 (324)
|+|++.|++++. ++..+|.+++.. ++||.|||||||+...+. ..+.-.+|+.+|.
T Consensus 199 r~Nl~~N~~~~~-~v~~s~~~~~v~---~kfd~IisNPPfh~G~~v---------------------~~~~~~~~i~~A~ 253 (300)
T COG2813 199 RKNLAANGVENT-EVWASNLYEPVE---GKFDLIISNPPFHAGKAV---------------------VHSLAQEIIAAAA 253 (300)
T ss_pred HHhHHHcCCCcc-EEEEeccccccc---ccccEEEeCCCccCCcch---------------------hHHHHHHHHHHHH
Confidence 999999999864 889999988765 499999999999844321 1234558999999
Q ss_pred cccCCCC
Q 020573 317 SMLKPDK 323 (324)
Q Consensus 317 ~~LkpgG 323 (324)
++|++||
T Consensus 254 ~~L~~gG 260 (300)
T COG2813 254 RHLKPGG 260 (300)
T ss_pred HhhccCC
Confidence 9999999
|
|
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.6e-18 Score=147.42 Aligned_cols=141 Identities=26% Similarity=0.473 Sum_probs=115.6
Q ss_pred eCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCC
Q 020573 166 EEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGL 245 (324)
Q Consensus 166 ~~~vliPrp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl 245 (324)
++++|.|++++.++++.+.. .++.+|||+|||+|.++..++.. +.+|+|+|+|+++++.+++|+..+++
T Consensus 2 ~~~~~~p~~~~~~l~~~~~~--------~~~~~vLd~G~G~G~~~~~l~~~---~~~v~~~D~s~~~~~~a~~~~~~~~~ 70 (188)
T PRK14968 2 NDEVYEPAEDSFLLAENAVD--------KKGDRVLEVGTGSGIVAIVAAKN---GKKVVGVDINPYAVECAKCNAKLNNI 70 (188)
T ss_pred CCcccCcchhHHHHHHhhhc--------cCCCEEEEEccccCHHHHHHHhh---cceEEEEECCHHHHHHHHHHHHHcCC
Confidence 57899999999988887653 23568999999999999999986 47999999999999999999999888
Q ss_pred CCc-EEEEEcccccccccCCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 246 QDI-IEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 246 ~~r-v~~~~gD~~~~l~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
.++ +.++++|+.+.+.. ++||+|++||||.+........ .....++.+|.+|.+.+..+++++.++|||||+
T Consensus 71 ~~~~~~~~~~d~~~~~~~--~~~d~vi~n~p~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~ 143 (188)
T PRK14968 71 RNNGVEVIRSDLFEPFRG--DKFDVILFNPPYLPTEEEEEWD-----DWLNYALSGGKDGREVIDRFLDEVGRYLKPGGR 143 (188)
T ss_pred CCcceEEEeccccccccc--cCceEEEECCCcCCCCchhhhh-----hhhhhhhccCcChHHHHHHHHHHHHHhcCCCeE
Confidence 655 89999999886543 4899999999998754322111 112456778889999999999999999999994
|
|
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.1e-18 Score=161.59 Aligned_cols=163 Identities=20% Similarity=0.317 Sum_probs=117.0
Q ss_pred cCeee-eeeCCccccc-chHHHHHHHHHHHhhhcC----CCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHH
Q 020573 159 RDLVL-SVEEGVFIPR-PETELMVDLVSDVLVRDN----DGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLA 232 (324)
Q Consensus 159 ~~l~~-~v~~~vliPr-p~te~lve~l~~~l~~~~----~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~a 232 (324)
+|+++ .+..+.+.|. |..--++.++.+++.... ......++||||||+|+++..++... ++++++|+|+++.|
T Consensus 72 ygl~~wdip~~~LcPpiP~R~~Yi~~l~dll~~~~~~~~p~~~~~~vLDIGtGag~I~~lLa~~~-~~~~~~atDId~~A 150 (321)
T PRK11727 72 YGVAHWDIPAGYLCPPIPGRADYIHHLADLLAEDNGGVIPRGANVRVLDIGVGANCIYPLIGVHE-YGWRFVGSDIDPQA 150 (321)
T ss_pred cCCCcccCCCCCcCCCCCcHHHHHHHHHHHhcccccccCCCCCCceEEEecCCccHHHHHHHhhC-CCCEEEEEeCCHHH
Confidence 46764 6888999986 777778888877762211 11235689999999999999998875 68999999999999
Q ss_pred HHHHHHHHHHc-CCCCcEEEEE-c---ccccccccCCCCeeEEEEcCCCCCCCCcccc--hh---hhhccccc---c---
Q 020573 233 AAVAAFNAQRY-GLQDIIEIRQ-G---SWFGKLKDVEGKLSGVVSNPPYIPSDDISGL--QV---EVGKHEPR---L--- 296 (324)
Q Consensus 233 l~~Ar~N~~~~-gl~~rv~~~~-g---D~~~~l~~~~~~fDlIVsNPPYi~~~~~~~l--~~---ev~~~eP~---~--- 296 (324)
++.|++|++.+ ++.++|++++ . ++++.+....++||+|+|||||..+.+.... +. ...+|.+. +
T Consensus 151 l~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDlivcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~ 230 (321)
T PRK11727 151 LASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDATLCNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFG 230 (321)
T ss_pred HHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEEEeCCCCcCcchhhccchhhHHhhhhccCCCccccCCc
Confidence 99999999999 8998998864 2 3343332224689999999999987654211 11 12223221 1
Q ss_pred ------cccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 297 ------ALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 297 ------aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
-..||+ +.++.++++++..+++..||
T Consensus 231 g~~~EL~~~GGe--~~fi~~mi~eS~~~~~~~gw 262 (321)
T PRK11727 231 GQQAELWCEGGE--VAFIKRMIEESKAFAKQVLW 262 (321)
T ss_pred chhhheeeCCcE--eeeehHhhHHHHHHHhhCcE
Confidence 113444 67888899998888887775
|
|
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.8e-17 Score=144.93 Aligned_cols=125 Identities=17% Similarity=0.193 Sum_probs=98.8
Q ss_pred CCCceeEEecccccCeeeeeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEE
Q 020573 146 RKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIA 225 (324)
Q Consensus 146 ~~pl~yi~g~~~f~~l~~~v~~~vliPrp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~g 225 (324)
|.+.=||+|.. |+|+.+.+.++.-. ||.++.+.+.+++++ .. ...+.+|||+|||+|++++.++... ..+|++
T Consensus 9 ~~~~mrIi~g~-~~g~~l~~~~~~~~-Rp~~d~v~e~l~~~l-~~--~~~~~~vLDl~~GsG~l~l~~lsr~--a~~V~~ 81 (199)
T PRK10909 9 GSGQIRIIGGQ-WRGRKLPVPDSPGL-RPTTDRVRETLFNWL-AP--VIVDARCLDCFAGSGALGLEALSRY--AAGATL 81 (199)
T ss_pred CCCCEEEEeec-cCCCEeCCCCCCCc-CcCCHHHHHHHHHHH-hh--hcCCCEEEEcCCCccHHHHHHHHcC--CCEEEE
Confidence 33345788766 78999988554322 999999999998877 21 1245699999999999999755542 369999
Q ss_pred EeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcCCCCC
Q 020573 226 VDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIP 278 (324)
Q Consensus 226 vDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNPPYi~ 278 (324)
+|+++.+++.|++|++.+++. +++++++|+++.+....++||+|++||||..
T Consensus 82 vE~~~~a~~~a~~Nl~~~~~~-~v~~~~~D~~~~l~~~~~~fDlV~~DPPy~~ 133 (199)
T PRK10909 82 LEMDRAVAQQLIKNLATLKAG-NARVVNTNALSFLAQPGTPHNVVFVDPPFRK 133 (199)
T ss_pred EECCHHHHHHHHHHHHHhCCC-cEEEEEchHHHHHhhcCCCceEEEECCCCCC
Confidence 999999999999999999986 5999999998765433357999999999964
|
|
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.5e-17 Score=155.78 Aligned_cols=130 Identities=22% Similarity=0.333 Sum_probs=104.6
Q ss_pred CeeeeeeCCccccc---chHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHH
Q 020573 160 DLVLSVEEGVFIPR---PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVA 236 (324)
Q Consensus 160 ~l~~~v~~~vliPr---p~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~A 236 (324)
++.+...+++|.+. ..|+++++.+... ..++|||+|||+|.+++.+++.. ++.+|+++|+|+.|++.|
T Consensus 166 ~l~i~~~pgvFs~~~lD~gt~lLl~~l~~~--------~~g~VLDlGCG~G~ls~~la~~~-p~~~v~~vDis~~Al~~A 236 (342)
T PRK09489 166 GLTVKTLPGVFSRDGLDVGSQLLLSTLTPH--------TKGKVLDVGCGAGVLSAVLARHS-PKIRLTLSDVSAAALESS 236 (342)
T ss_pred CEEEEeCCCCCCCCCCCHHHHHHHHhcccc--------CCCeEEEeccCcCHHHHHHHHhC-CCCEEEEEECCHHHHHHH
Confidence 56778889999974 4567777654421 24589999999999999999985 778999999999999999
Q ss_pred HHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHh
Q 020573 237 AFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTA 316 (324)
Q Consensus 237 r~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~ 316 (324)
++|++.+++. .+++.+|.++.. .++||+||+||||+... ....+..+.++.++.
T Consensus 237 ~~nl~~n~l~--~~~~~~D~~~~~---~~~fDlIvsNPPFH~g~---------------------~~~~~~~~~~i~~a~ 290 (342)
T PRK09489 237 RATLAANGLE--GEVFASNVFSDI---KGRFDMIISNPPFHDGI---------------------QTSLDAAQTLIRGAV 290 (342)
T ss_pred HHHHHHcCCC--CEEEEccccccc---CCCccEEEECCCccCCc---------------------cccHHHHHHHHHHHH
Confidence 9999999875 577888887643 46899999999997321 112456778999999
Q ss_pred cccCCCCC
Q 020573 317 SMLKPDKW 324 (324)
Q Consensus 317 ~~LkpgG~ 324 (324)
++|||||.
T Consensus 291 ~~LkpgG~ 298 (342)
T PRK09489 291 RHLNSGGE 298 (342)
T ss_pred HhcCcCCE
Confidence 99999994
|
|
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.8e-16 Score=154.33 Aligned_cols=126 Identities=23% Similarity=0.236 Sum_probs=105.9
Q ss_pred cCCCceeEEec--------ccccCeeeeeeCCcccc--cchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHH
Q 020573 145 KRKPFQYLVGC--------EHWRDLVLSVEEGVFIP--RPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIA 214 (324)
Q Consensus 145 ~~~pl~yi~g~--------~~f~~l~~~v~~~vliP--rp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la 214 (324)
+++|.+|+.|. .+|+++.|.++++.|++ +..++.+++.+++++ ...++.+|||+|||+|.+++.++
T Consensus 241 ~~~~~~~i~g~~~~~~~~~~~~~g~~f~~~~~~F~q~n~~~~e~l~~~vl~~l----~~~~~~~VLDlgcGtG~~sl~la 316 (443)
T PRK13168 241 KGPDLVHLLGPADAQLSYYLPEFGLRLAFSPRDFIQVNAQVNQKMVARALEWL----DPQPGDRVLDLFCGLGNFTLPLA 316 (443)
T ss_pred CCCcceeecccccCCcceEEEcCCeEEEECCCCeEEcCHHHHHHHHHHHHHHh----cCCCCCEEEEEeccCCHHHHHHH
Confidence 46789999886 24778999999999986 567899999999887 22345799999999999999999
Q ss_pred HHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccccc---CCCCeeEEEEcCCCCC
Q 020573 215 RVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKD---VEGKLSGVVSNPPYIP 278 (324)
Q Consensus 215 ~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~---~~~~fDlIVsNPPYi~ 278 (324)
+.. .+|+|+|+|++|++.|++|++.+++.+ ++++++|+.+.+.. ..++||+|++||||..
T Consensus 317 ~~~---~~V~gvD~s~~al~~A~~n~~~~~~~~-v~~~~~d~~~~l~~~~~~~~~fD~Vi~dPPr~g 379 (443)
T PRK13168 317 RQA---AEVVGVEGVEAMVERARENARRNGLDN-VTFYHANLEEDFTDQPWALGGFDKVLLDPPRAG 379 (443)
T ss_pred HhC---CEEEEEeCCHHHHHHHHHHHHHcCCCc-eEEEEeChHHhhhhhhhhcCCCCEEEECcCCcC
Confidence 874 699999999999999999999999864 99999999765432 1357999999999974
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.66 E-value=8.5e-16 Score=123.08 Aligned_cols=105 Identities=26% Similarity=0.354 Sum_probs=84.2
Q ss_pred CCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcCC
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPP 275 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNPP 275 (324)
+.+|||+|||+|.+++.+++.+ ++.+|+|+|+|+++++.|++|+...+..++++++++|+ .......++||+|+++-
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~~~~~D~v~~~~- 78 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLF-PGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EFDPDFLEPFDLVICSG- 78 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGGTTTSSCEEEEEECS-
T ss_pred CCEEEEEcCcCCHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccCcccCCCCCEEEECC-
Confidence 5699999999999999999975 78999999999999999999998888888999999999 22223346899999964
Q ss_pred CCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 276 YIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 276 Yi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
+. . .+-+ .++..+.+++.+.++|+|||+
T Consensus 79 ~~----~--------~~~~---------~~~~~~~~l~~~~~~L~pgG~ 106 (112)
T PF12847_consen 79 FT----L--------HFLL---------PLDERRRVLERIRRLLKPGGR 106 (112)
T ss_dssp GS----G--------GGCC---------HHHHHHHHHHHHHHHEEEEEE
T ss_pred Cc----c--------cccc---------chhHHHHHHHHHHHhcCCCcE
Confidence 31 0 0000 124456789999999999995
|
... |
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.9e-15 Score=141.15 Aligned_cols=154 Identities=23% Similarity=0.392 Sum_probs=111.6
Q ss_pred HHHHHHHHHHHHhcCCCceeEEecccccC-------eeeeeeCCcccc---cchHHHHHHHHHHHhhhcCCCCCCCeEEE
Q 020573 132 LDELYGLWKQRIEKRKPFQYLVGCEHWRD-------LVLSVEEGVFIP---RPETELMVDLVSDVLVRDNDGLRDGFWVD 201 (324)
Q Consensus 132 ~~~~~~~~~~r~~~~~pl~yi~g~~~f~~-------l~~~v~~~vliP---rp~te~lve~l~~~l~~~~~~~~~~~VLD 201 (324)
.++|.+.|++.+.--+--..++-...|+. ..+.++||+-+- +|.|.+.++++.+.. .++.++||
T Consensus 95 e~DW~~~wk~~~~P~rig~~f~I~Psw~~~~~~~~~~~i~lDPGlAFGTG~HpTT~lcL~~Le~~~------~~g~~vlD 168 (300)
T COG2264 95 EEDWEREWKKYFHPVRIGERFVIVPSWREYPEPSDELNIELDPGLAFGTGTHPTTSLCLEALEKLL------KKGKTVLD 168 (300)
T ss_pred hHHHHHHHHhcCCcEEeeeeEEECCCCccCCCCCCceEEEEccccccCCCCChhHHHHHHHHHHhh------cCCCEEEE
Confidence 47888888765532222223444556663 347788887774 589999999988876 25779999
Q ss_pred EcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcCCCCCCCC
Q 020573 202 LGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDD 281 (324)
Q Consensus 202 LGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNPPYi~~~~ 281 (324)
+|||||.++++.++. ...+|+|+|++|.|++.|++|+++|++...++....+..+... .++||+||+|=
T Consensus 169 vGcGSGILaIAa~kL--GA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~--~~~~DvIVANI------- 237 (300)
T COG2264 169 VGCGSGILAIAAAKL--GAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPE--NGPFDVIVANI------- 237 (300)
T ss_pred ecCChhHHHHHHHHc--CCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcc--cCcccEEEehh-------
Confidence 999999999999995 4578999999999999999999999987533333333322222 25999999981
Q ss_pred cccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 282 ISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 282 ~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
-. +.+..+...+.+.|||||+
T Consensus 238 ----LA------------------~vl~~La~~~~~~lkpgg~ 258 (300)
T COG2264 238 ----LA------------------EVLVELAPDIKRLLKPGGR 258 (300)
T ss_pred ----hH------------------HHHHHHHHHHHHHcCCCce
Confidence 11 2344678888999999985
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.3e-15 Score=140.72 Aligned_cols=112 Identities=20% Similarity=0.225 Sum_probs=91.4
Q ss_pred CCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcCC
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPP 275 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNPP 275 (324)
.++|||+|||+|.+++.+++.. +..+|+|+|+|+.|++.|++|. ++++++++|+.+... .++||+||+|||
T Consensus 65 ~grVLDLGcGsGilsl~la~r~-~~~~V~gVDisp~al~~Ar~n~------~~v~~v~~D~~e~~~--~~kFDlIIsNPP 135 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRC-KPEKIVCVELNPEFARIGKRLL------PEAEWITSDVFEFES--NEKFDVVISNPP 135 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhC------cCCEEEECchhhhcc--cCCCcEEEEcCC
Confidence 4689999999999999998874 4579999999999999999873 258999999987543 368999999999
Q ss_pred CCCCCCcccchhhhhcccccccccCCCCcHHHH--HHHHHHHhcccCCCCC
Q 020573 276 YIPSDDISGLQVEVGKHEPRLALDGGVDGLDYL--LHLCNGTASMLKPDKW 324 (324)
Q Consensus 276 Yi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~--~~il~~a~~~LkpgG~ 324 (324)
|...... ..+...+..||+.|.+.+ ..++..+..+|+|+|.
T Consensus 136 F~~l~~~--------d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~ 178 (279)
T PHA03411 136 FGKINTT--------DTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGS 178 (279)
T ss_pred ccccCch--------hhhhhhhhccCccccccccHHHHHhhhHheecCCce
Confidence 9864321 112225677899999985 8999999999999994
|
|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=6.7e-16 Score=139.80 Aligned_cols=105 Identities=15% Similarity=0.231 Sum_probs=84.9
Q ss_pred CCeEEEEcCCccHHHHHHHHHhC--CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEc
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLG--SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN 273 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~--p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsN 273 (324)
+.+|||+|||+|.+++.++++.. +..+|+|+|+++.|+++|++|+. ++.++++|+.... ..++||+||+|
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~------~~~~~~~D~~~~~--~~~~FDlIIsN 121 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP------EATWINADALTTE--FDTLFDMAISN 121 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc------CCEEEEcchhccc--ccCCccEEEEC
Confidence 56999999999999999998641 35699999999999999998853 3889999987532 24689999999
Q ss_pred CCCCCCCCcccchhhhhcccccccc-cCCCCcHHHHHHHHHHHhcccCCCC
Q 020573 274 PPYIPSDDISGLQVEVGKHEPRLAL-DGGVDGLDYLLHLCNGTASMLKPDK 323 (324)
Q Consensus 274 PPYi~~~~~~~l~~ev~~~eP~~aL-~gg~dGl~~~~~il~~a~~~LkpgG 323 (324)
|||.+... +. .+..+|+.....+++.|.+++++|+
T Consensus 122 PPY~~~~~---------------~d~~ar~~g~~~~~~li~~A~~Ll~~G~ 157 (241)
T PHA03412 122 PPFGKIKT---------------SDFKGKYTGAEFEYKVIERASQIARQGT 157 (241)
T ss_pred CCCCCccc---------------cccCCcccccHHHHHHHHHHHHHcCCCE
Confidence 99986331 11 2336789999999999999888876
|
|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.4e-15 Score=150.96 Aligned_cols=142 Identities=19% Similarity=0.283 Sum_probs=109.0
Q ss_pred CCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCC
Q 020573 167 EGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQ 246 (324)
Q Consensus 167 ~~vliPrp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~ 246 (324)
.|.++.+.++..++..+++ ..++.+|||+|||+|..++.+++..+++++|+|+|+++.+++.+++|++++|+.
T Consensus 229 ~G~~~~qd~~s~lv~~~l~-------~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~ 301 (444)
T PRK14902 229 DGLITIQDESSMLVAPALD-------PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLT 301 (444)
T ss_pred CceEEEEChHHHHHHHHhC-------CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC
Confidence 4556666666665554443 124568999999999999999998656789999999999999999999999997
Q ss_pred CcEEEEEcccccccccCCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHH----HHHHHHHHHhcccCCC
Q 020573 247 DIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLD----YLLHLCNGTASMLKPD 322 (324)
Q Consensus 247 ~rv~~~~gD~~~~l~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~----~~~~il~~a~~~Lkpg 322 (324)
+ ++++++|+.+......++||+|++||||...+.+ ++.|...+....+++. ..+.+++.+.++||||
T Consensus 302 ~-v~~~~~D~~~~~~~~~~~fD~Vl~D~Pcsg~G~~--------~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpG 372 (444)
T PRK14902 302 N-IETKALDARKVHEKFAEKFDKILVDAPCSGLGVI--------RRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKG 372 (444)
T ss_pred e-EEEEeCCcccccchhcccCCEEEEcCCCCCCeee--------ccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 6 9999999977543233689999999999754432 4556655555444443 3468999999999999
Q ss_pred CC
Q 020573 323 KW 324 (324)
Q Consensus 323 G~ 324 (324)
|.
T Consensus 373 G~ 374 (444)
T PRK14902 373 GI 374 (444)
T ss_pred CE
Confidence 95
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.5e-15 Score=151.84 Aligned_cols=149 Identities=18% Similarity=0.130 Sum_probs=112.2
Q ss_pred cCChhHHHHHHHHHHHHhcCCCcee----EEecccccCeeeeeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEE
Q 020573 127 RLRIGLDELYGLWKQRIEKRKPFQY----LVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDL 202 (324)
Q Consensus 127 ~l~~~~~~~~~~~~~r~~~~~pl~y----i~g~~~f~~l~~~v~~~vliPrp~te~lve~l~~~l~~~~~~~~~~~VLDL 202 (324)
.+..+..+.+..+.+| +|| |+|...|++..|.+.+++. +|+.+++.+. + .++.+|||+
T Consensus 212 ~~~~~~~~~~~~~~~~------~~y~~~~i~~~~~f~g~~~~v~~~v~----~te~l~~~~~--~------~~~~~vLDi 273 (475)
T PLN02336 212 KVSSTNDKGFQRFLDN------VQYKSSGILRYERVFGEGFVSTGGLE----TTKEFVDKLD--L------KPGQKVLDV 273 (475)
T ss_pred eecCCcchhHHHHhhh------hccccccHHHHHHHhCCCCCCCchHH----HHHHHHHhcC--C------CCCCEEEEE
Confidence 3443333444444444 899 9999999999999999887 6777776543 1 235699999
Q ss_pred cCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcCCCCCCCCc
Q 020573 203 GTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDI 282 (324)
Q Consensus 203 GcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNPPYi~~~~~ 282 (324)
|||+|++++.+++.+ +.+|+|+|+|+.+++.|++|+. +...++++.++|+.+.. ...++||+|+++--
T Consensus 274 GcG~G~~~~~la~~~--~~~v~gvDiS~~~l~~A~~~~~--~~~~~v~~~~~d~~~~~-~~~~~fD~I~s~~~------- 341 (475)
T PLN02336 274 GCGIGGGDFYMAENF--DVHVVGIDLSVNMISFALERAI--GRKCSVEFEVADCTKKT-YPDNSFDVIYSRDT------- 341 (475)
T ss_pred eccCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhh--cCCCceEEEEcCcccCC-CCCCCEEEEEECCc-------
Confidence 999999999999875 5799999999999999999876 44457999999998642 12468999999522
Q ss_pred ccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 283 SGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 283 ~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
..|-+ ....+++++.+.|||||+
T Consensus 342 -------l~h~~------------d~~~~l~~~~r~LkpgG~ 364 (475)
T PLN02336 342 -------ILHIQ------------DKPALFRSFFKWLKPGGK 364 (475)
T ss_pred -------ccccC------------CHHHHHHHHHHHcCCCeE
Confidence 23322 123688999999999995
|
|
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=99.61 E-value=6.6e-15 Score=140.83 Aligned_cols=125 Identities=18% Similarity=0.246 Sum_probs=95.3
Q ss_pred chHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEE
Q 020573 174 PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQ 253 (324)
Q Consensus 174 p~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~ 253 (324)
+..+.+...+.+.. ...++.+|||+|||+|.+++.++.. +.+|+|+|+++.|++.|+.|++.+|+.+ +.+.+
T Consensus 165 ~l~~~la~~~~~l~----~~~~g~~vLDp~cGtG~~lieaa~~---~~~v~g~Di~~~~~~~a~~nl~~~g~~~-i~~~~ 236 (329)
T TIGR01177 165 SMDPKLARAMVNLA----RVTEGDRVLDPFCGTGGFLIEAGLM---GAKVIGCDIDWKMVAGARINLEHYGIED-FFVKR 236 (329)
T ss_pred CCCHHHHHHHHHHh----CCCCcCEEEECCCCCCHHHHHHHHh---CCeEEEEcCCHHHHHHHHHHHHHhCCCC-CeEEe
Confidence 33344455444443 2234678999999999999987764 4799999999999999999999999987 99999
Q ss_pred cccccccccCCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 254 GSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 254 gD~~~~l~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
+|+.+ ++...++||+|++||||....... +....+.+..+++.+.++|||||+
T Consensus 237 ~D~~~-l~~~~~~~D~Iv~dPPyg~~~~~~-----------------~~~~~~l~~~~l~~~~r~Lk~gG~ 289 (329)
T TIGR01177 237 GDATK-LPLSSESVDAIATDPPYGRSTTAA-----------------GDGLESLYERSLEEFHEVLKSEGW 289 (329)
T ss_pred cchhc-CCcccCCCCEEEECCCCcCccccc-----------------CCchHHHHHHHHHHHHHHccCCcE
Confidence 99987 332246899999999997533210 112236678999999999999995
|
This family is found exclusively in the Archaea. |
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.6e-15 Score=145.74 Aligned_cols=111 Identities=16% Similarity=0.153 Sum_probs=89.7
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCC-CcEEEEEcccccccccC---CCCeeEE
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQ-DIIEIRQGSWFGKLKDV---EGKLSGV 270 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~-~rv~~~~gD~~~~l~~~---~~~fDlI 270 (324)
++++|||+|||+|++++.++.. ...+|+++|+|+.+++.|++|++.+++. ++++++++|+++.+... .++||+|
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~--ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlV 297 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMG--GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVI 297 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhC--CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEE
Confidence 3679999999999999987753 4569999999999999999999999986 47999999999865431 3589999
Q ss_pred EEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 271 VSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 271 VsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
|+||||..... . ++. .++..|..++..+.++|+|||+
T Consensus 298 ilDPP~f~~~k-----~---------~l~---~~~~~y~~l~~~a~~lLk~gG~ 334 (396)
T PRK15128 298 VMDPPKFVENK-----S---------QLM---GACRGYKDINMLAIQLLNPGGI 334 (396)
T ss_pred EECCCCCCCCh-----H---------HHH---HHHHHHHHHHHHHHHHcCCCeE
Confidence 99999975431 0 111 2355688899999999999995
|
|
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=99.60 E-value=6.2e-15 Score=138.53 Aligned_cols=130 Identities=30% Similarity=0.485 Sum_probs=90.2
Q ss_pred hHHHHHHHHHHHHhcCCCceeEEecccccC-------eeeeeeCCcccc---cchHHHHHHHHHHHhhhcCCCCCCCeEE
Q 020573 131 GLDELYGLWKQRIEKRKPFQYLVGCEHWRD-------LVLSVEEGVFIP---RPETELMVDLVSDVLVRDNDGLRDGFWV 200 (324)
Q Consensus 131 ~~~~~~~~~~~r~~~~~pl~yi~g~~~f~~-------l~~~v~~~vliP---rp~te~lve~l~~~l~~~~~~~~~~~VL 200 (324)
+.++|.+.|++.+..-+--..+.-...|.. ..+.++|++-+- +|.|.+.++.+.+.. .++.+||
T Consensus 93 ~~~dW~~~Wk~~~~P~~vg~~~~I~P~w~~~~~~~~~~~I~idPg~AFGTG~H~TT~lcl~~l~~~~------~~g~~vL 166 (295)
T PF06325_consen 93 EEEDWEEAWKKYFKPIRVGDRLVIVPSWEEYPEPPDEIVIEIDPGMAFGTGHHPTTRLCLELLEKYV------KPGKRVL 166 (295)
T ss_dssp -HHCHHHHHHHH---EEECTTEEEEETT----SSTTSEEEEESTTSSS-SSHCHHHHHHHHHHHHHS------STTSEEE
T ss_pred ccccchHHHHhcCccEEECCcEEEECCCcccCCCCCcEEEEECCCCcccCCCCHHHHHHHHHHHHhc------cCCCEEE
Confidence 457788899877632211122333444532 346677776664 588999999888765 2456999
Q ss_pred EEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEc
Q 020573 201 DLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN 273 (324)
Q Consensus 201 DLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsN 273 (324)
|+|||||.++++.++. ...+|+|+|+++.|++.|++|++.|++.+++.+. ...+ . ..++||+|++|
T Consensus 167 DvG~GSGILaiaA~kl--GA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~--~~~~-~--~~~~~dlvvAN 232 (295)
T PF06325_consen 167 DVGCGSGILAIAAAKL--GAKKVVAIDIDPLAVEAARENAELNGVEDRIEVS--LSED-L--VEGKFDLVVAN 232 (295)
T ss_dssp EES-TTSHHHHHHHHT--TBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEES--CTSC-T--CCS-EEEEEEE
T ss_pred EeCCcHHHHHHHHHHc--CCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE--Eecc-c--ccccCCEEEEC
Confidence 9999999999999995 3468999999999999999999999999877663 1111 1 23799999998
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=5e-15 Score=154.57 Aligned_cols=113 Identities=17% Similarity=0.190 Sum_probs=92.7
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCC-CcEEEEEcccccccccCCCCeeEEEEc
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQ-DIIEIRQGSWFGKLKDVEGKLSGVVSN 273 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~-~rv~~~~gD~~~~l~~~~~~fDlIVsN 273 (324)
++++|||+|||+|.+++.+++. ...+|+++|+|+.|++.|++|++.+++. ++++++++|+++.+....++||+||+|
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~--Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilD 615 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALG--GAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFID 615 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEEC
Confidence 3579999999999999999985 3457999999999999999999999987 689999999988664444689999999
Q ss_pred CCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 274 PPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
|||...... +. . -.++...|..++..+.++|+|||+
T Consensus 616 PP~f~~~~~--~~-~------------~~~~~~~y~~l~~~a~~lL~~gG~ 651 (702)
T PRK11783 616 PPTFSNSKR--ME-D------------SFDVQRDHVALIKDAKRLLRPGGT 651 (702)
T ss_pred CCCCCCCCc--cc-h------------hhhHHHHHHHHHHHHHHHcCCCCE
Confidence 999864321 00 0 013466788999999999999995
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.8e-14 Score=133.79 Aligned_cols=141 Identities=14% Similarity=0.202 Sum_probs=103.0
Q ss_pred CCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCC
Q 020573 167 EGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQ 246 (324)
Q Consensus 167 ~~vliPrp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~ 246 (324)
.|.+.+......++..+++ ..++.+|||+|||+|..++.+++..+..+.|+|+|+++.+++.+++|++++|+.
T Consensus 50 ~G~~~~qd~~s~~~~~~l~-------~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~ 122 (264)
T TIGR00446 50 SGLYYIQEASSMIPPLALE-------PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVL 122 (264)
T ss_pred CCeEEEECHHHHHHHHHhC-------CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCC
Confidence 3445555555555544332 234679999999999999999998755679999999999999999999999986
Q ss_pred CcEEEEEcccccccccCCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcH----HHHHHHHHHHhcccCCC
Q 020573 247 DIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGL----DYLLHLCNGTASMLKPD 322 (324)
Q Consensus 247 ~rv~~~~gD~~~~l~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl----~~~~~il~~a~~~Lkpg 322 (324)
+ ++++++|..... ...++||.|++|||+...+.+ +++|...+.-..+-+ ...+.+++.|.++||||
T Consensus 123 ~-v~~~~~D~~~~~-~~~~~fD~Vl~D~Pcsg~G~~--------~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpg 192 (264)
T TIGR00446 123 N-VAVTNFDGRVFG-AAVPKFDAILLDAPCSGEGVI--------RKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPG 192 (264)
T ss_pred c-EEEecCCHHHhh-hhccCCCEEEEcCCCCCCccc--------ccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 5 999999976532 223579999999999755443 344444322222222 23467999999999999
Q ss_pred CC
Q 020573 323 KW 324 (324)
Q Consensus 323 G~ 324 (324)
|+
T Consensus 193 G~ 194 (264)
T TIGR00446 193 GV 194 (264)
T ss_pred CE
Confidence 95
|
|
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.4e-14 Score=127.25 Aligned_cols=96 Identities=21% Similarity=0.199 Sum_probs=79.3
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNP 274 (324)
.+.+|||+|||+|.+++.++... ++++|+|+|.|+.+++.+++|++++++.+ ++++++|+.+. . ..++||+|++|.
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~-~~~~V~~iD~s~~~~~~a~~~~~~~~~~~-i~~i~~d~~~~-~-~~~~fD~I~s~~ 117 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIAR-PELKLTLLESNHKKVAFLREVKAELGLNN-VEIVNGRAEDF-Q-HEEQFDVITSRA 117 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHC-CCCeEEEEeCcHHHHHHHHHHHHHhCCCC-eEEEecchhhc-c-ccCCccEEEehh
Confidence 46799999999999999999864 77899999999999999999999999864 99999999774 2 246899999973
Q ss_pred CCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 275 PYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
+ ..+..+++.+.++|+|||.
T Consensus 118 -~-----------------------------~~~~~~~~~~~~~LkpgG~ 137 (181)
T TIGR00138 118 -L-----------------------------ASLNVLLELTLNLLKVGGY 137 (181)
T ss_pred -h-----------------------------hCHHHHHHHHHHhcCCCCE
Confidence 1 1122466777899999984
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.57 E-value=2e-14 Score=136.69 Aligned_cols=112 Identities=18% Similarity=0.156 Sum_probs=92.7
Q ss_pred ccCeeeeeeCCccccc--chHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHH
Q 020573 158 WRDLVLSVEEGVFIPR--PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAV 235 (324)
Q Consensus 158 f~~l~~~v~~~vliPr--p~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~ 235 (324)
+.+..|.+.++.|++. ..++.+++.+.+++ . ...+.+|||+|||+|.+++.+++. ..+|+|+|+|+.|++.
T Consensus 138 ~~~~~~~~~~~sF~Q~n~~~~~~l~~~v~~~l-~---~~~~~~VLDl~cG~G~~sl~la~~---~~~V~gvD~s~~av~~ 210 (315)
T PRK03522 138 FNGVPLFIRPQSFFQTNPAVAAQLYATARDWV-R---ELPPRSMWDLFCGVGGFGLHCATP---GMQLTGIEISAEAIAC 210 (315)
T ss_pred ECCEEEEECCCeeeecCHHHHHHHHHHHHHHH-H---hcCCCEEEEccCCCCHHHHHHHhc---CCEEEEEeCCHHHHHH
Confidence 4567899999999975 45677888888776 2 223579999999999999999985 3799999999999999
Q ss_pred HHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcCCCC
Q 020573 236 AAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYI 277 (324)
Q Consensus 236 Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNPPYi 277 (324)
|++|++.+++. +++++++|+.+......++||+|++|||+.
T Consensus 211 A~~n~~~~~l~-~v~~~~~D~~~~~~~~~~~~D~Vv~dPPr~ 251 (315)
T PRK03522 211 AKQSAAELGLT-NVQFQALDSTQFATAQGEVPDLVLVNPPRR 251 (315)
T ss_pred HHHHHHHcCCC-ceEEEEcCHHHHHHhcCCCCeEEEECCCCC
Confidence 99999999984 699999999765432335799999999975
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.8e-14 Score=142.53 Aligned_cols=124 Identities=18% Similarity=0.204 Sum_probs=96.2
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNP 274 (324)
++.+|||+|||+|..++.++...+++++|+|+|+++.+++.+++|+++.|+.+ +++.++|..+......++||.|++||
T Consensus 237 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~-v~~~~~Da~~l~~~~~~~fD~Vl~Da 315 (431)
T PRK14903 237 PGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSS-IEIKIADAERLTEYVQDTFDRILVDA 315 (431)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCe-EEEEECchhhhhhhhhccCCEEEECC
Confidence 46799999999999999999987667899999999999999999999999865 99999998763222346899999999
Q ss_pred CCCCCCCcccchhhhhcccccccccCCCCcH-HHHHHHHHHHhcccCCCCC
Q 020573 275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGL-DYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 275 PYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl-~~~~~il~~a~~~LkpgG~ 324 (324)
||...+.+. ..+++..+.+... ..++ ...++++..+.++|||||+
T Consensus 316 PCsg~G~~~-~~p~~~~~~~~~~----~~~l~~~Q~~iL~~a~~~LkpGG~ 361 (431)
T PRK14903 316 PCTSLGTAR-NHPEVLRRVNKED----FKKLSEIQLRIVSQAWKLLEKGGI 361 (431)
T ss_pred CCCCCcccc-CChHHHHhCCHHH----HHHHHHHHHHHHHHHHHhcCCCCE
Confidence 998776542 2344433322211 1122 2557899999999999995
|
|
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.5e-14 Score=122.86 Aligned_cols=102 Identities=27% Similarity=0.336 Sum_probs=83.5
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccccc-CCCCeeEEEEc
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKD-VEGKLSGVVSN 273 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~-~~~~fDlIVsN 273 (324)
.+.+|||+|||+|.++..+++...++.+|+|+|+|+++++.|+++++.+++. +++|.++|+.+ +.. ..++||+|+++
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~-ni~~~~~d~~~-l~~~~~~~~D~I~~~ 80 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLD-NIEFIQGDIED-LPQELEEKFDIIISN 80 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTST-TEEEEESBTTC-GCGCSSTTEEEEEEE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccccc-ccceEEeehhc-cccccCCCeeEEEEc
Confidence 3569999999999999999965557899999999999999999999999998 69999999998 542 12689999998
Q ss_pred CCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 274 PPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
.++.. +.....+++.+.++||+||+
T Consensus 81 ~~l~~--------------------------~~~~~~~l~~~~~~lk~~G~ 105 (152)
T PF13847_consen 81 GVLHH--------------------------FPDPEKVLKNIIRLLKPGGI 105 (152)
T ss_dssp STGGG--------------------------TSHHHHHHHHHHHHEEEEEE
T ss_pred Cchhh--------------------------ccCHHHHHHHHHHHcCCCcE
Confidence 77621 11223578888999999884
|
... |
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.57 E-value=7.6e-14 Score=131.17 Aligned_cols=152 Identities=24% Similarity=0.467 Sum_probs=109.9
Q ss_pred HHHHHHHHHHHHhcCCCce-eEEeccccc-------CeeeeeeCCcccc---cchHHHHHHHHHHHhhhcCCCCCCCeEE
Q 020573 132 LDELYGLWKQRIEKRKPFQ-YLVGCEHWR-------DLVLSVEEGVFIP---RPETELMVDLVSDVLVRDNDGLRDGFWV 200 (324)
Q Consensus 132 ~~~~~~~~~~r~~~~~pl~-yi~g~~~f~-------~l~~~v~~~vliP---rp~te~lve~l~~~l~~~~~~~~~~~VL 200 (324)
.++|.+.|++.+.. .++. +++-...|. ...+.++|+..+. ++.|.+..+.+.... .++.+||
T Consensus 92 ~~dW~~~w~~~~~p-~~~g~~~~i~p~w~~~~~~~~~~~i~ldpg~aFgtG~h~tt~l~l~~l~~~~------~~g~~VL 164 (288)
T TIGR00406 92 SKDWERAWKDNFHP-VQFGKRFWICPSWRDVPSDEDALIIMLDPGLAFGTGTHPTTSLCLEWLEDLD------LKDKNVI 164 (288)
T ss_pred hhhHHHHHHHhCCC-EEEcCeEEEECCCcCCCCCCCcEEEEECCCCcccCCCCHHHHHHHHHHHhhc------CCCCEEE
Confidence 47888999887633 2222 233334442 2456677877664 466777666655433 2457999
Q ss_pred EEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcCCCCCCC
Q 020573 201 DLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSD 280 (324)
Q Consensus 201 DLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNPPYi~~~ 280 (324)
|+|||+|.+++.+++. ...+|+|+|+|+.|++.|++|+..+++.+++.+..++.... ..++||+|++|..
T Consensus 165 DvGcGsG~lai~aa~~--g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~---~~~~fDlVvan~~----- 234 (288)
T TIGR00406 165 DVGCGSGILSIAALKL--GAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQP---IEGKADVIVANIL----- 234 (288)
T ss_pred EeCCChhHHHHHHHHc--CCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccc---cCCCceEEEEecC-----
Confidence 9999999999998874 34699999999999999999999999988888888774332 2368999999842
Q ss_pred CcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 281 DISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 281 ~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
.+.+..++.++.++|||||+
T Consensus 235 ------------------------~~~l~~ll~~~~~~LkpgG~ 254 (288)
T TIGR00406 235 ------------------------AEVIKELYPQFSRLVKPGGW 254 (288)
T ss_pred ------------------------HHHHHHHHHHHHHHcCCCcE
Confidence 12234678888999999985
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.1e-14 Score=125.71 Aligned_cols=95 Identities=23% Similarity=0.207 Sum_probs=81.5
Q ss_pred CCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcCC
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPP 275 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNPP 275 (324)
+.+|||+|||+|.+++.+++.. ++++|+|+|+++++++.|++|++.+++.+ ++++++|..+. .. .++||+|++|-
T Consensus 46 g~~VLDiGcGtG~~al~la~~~-~~~~V~giD~s~~~l~~A~~~~~~~~l~~-i~~~~~d~~~~-~~-~~~fDlV~~~~- 120 (187)
T PRK00107 46 GERVLDVGSGAGFPGIPLAIAR-PELKVTLVDSLGKKIAFLREVAAELGLKN-VTVVHGRAEEF-GQ-EEKFDVVTSRA- 120 (187)
T ss_pred CCeEEEEcCCCCHHHHHHHHHC-CCCeEEEEeCcHHHHHHHHHHHHHcCCCC-EEEEeccHhhC-CC-CCCccEEEEcc-
Confidence 6799999999999999999875 78999999999999999999999999876 99999998773 33 56899999961
Q ss_pred CCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 276 YIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 276 Yi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
...+..+++.+.++|||||+
T Consensus 121 -----------------------------~~~~~~~l~~~~~~LkpGG~ 140 (187)
T PRK00107 121 -----------------------------VASLSDLVELCLPLLKPGGR 140 (187)
T ss_pred -----------------------------ccCHHHHHHHHHHhcCCCeE
Confidence 01134688999999999995
|
|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=4e-14 Score=140.68 Aligned_cols=143 Identities=20% Similarity=0.227 Sum_probs=106.9
Q ss_pred eeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHc
Q 020573 164 SVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRY 243 (324)
Q Consensus 164 ~v~~~vliPrp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~ 243 (324)
....|.++.+..+..++-.++. ..++.+|||+|||+|..++.+++..+..++|+|+|+|+.+++.+++|++++
T Consensus 226 ~~~~G~~~vqd~~s~l~~~~l~-------~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~ 298 (445)
T PRK14904 226 FLKLGLVSVQNPTQALACLLLN-------PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASAL 298 (445)
T ss_pred HHhCcEEEEeCHHHHHHHHhcC-------CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHh
Confidence 3456666766666665554443 224679999999999999999987655679999999999999999999999
Q ss_pred CCCCcEEEEEcccccccccCCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHH----HHHHHHHHHhccc
Q 020573 244 GLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLD----YLLHLCNGTASML 319 (324)
Q Consensus 244 gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~----~~~~il~~a~~~L 319 (324)
|+. +++++++|+.+... .++||+|++|||+.....+. ..|...+....+.+. ..+.++..+.++|
T Consensus 299 g~~-~v~~~~~Da~~~~~--~~~fD~Vl~D~Pcsg~g~~~--------r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~l 367 (445)
T PRK14904 299 GIT-IIETIEGDARSFSP--EEQPDAILLDAPCTGTGVLG--------RRAELRWKLTPEKLAELVGLQAELLDHAASLL 367 (445)
T ss_pred CCC-eEEEEeCccccccc--CCCCCEEEEcCCCCCcchhh--------cCcchhhcCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 986 49999999877543 35899999999998765432 233333222222232 3467999999999
Q ss_pred CCCCC
Q 020573 320 KPDKW 324 (324)
Q Consensus 320 kpgG~ 324 (324)
||||+
T Consensus 368 kpgG~ 372 (445)
T PRK14904 368 KPGGV 372 (445)
T ss_pred CCCcE
Confidence 99995
|
|
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.3e-14 Score=137.53 Aligned_cols=112 Identities=18% Similarity=0.158 Sum_probs=91.6
Q ss_pred ccCeeeeeeCCccccc--chHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHH
Q 020573 158 WRDLVLSVEEGVFIPR--PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAV 235 (324)
Q Consensus 158 f~~l~~~v~~~vliPr--p~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~ 235 (324)
+.|..|.++++.|++- ...+.+++.+.+++ . ...+.+|||+|||+|.+++.++.. ..+|+|+|+++.|++.
T Consensus 198 ~~g~~~~~~~~~F~Q~n~~~~~~l~~~~~~~l-~---~~~~~~vLDL~cG~G~~~l~la~~---~~~v~~vE~~~~av~~ 270 (374)
T TIGR02085 198 FNDVPLVIRPQSFFQTNPKVAAQLYATARQWV-R---EIPVTQMWDLFCGVGGFGLHCAGP---DTQLTGIEIESEAIAC 270 (374)
T ss_pred ECCEEEEECCCccccCCHHHHHHHHHHHHHHH-H---hcCCCEEEEccCCccHHHHHHhhc---CCeEEEEECCHHHHHH
Confidence 4467899999999974 55677777777765 2 123468999999999999999974 3689999999999999
Q ss_pred HHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcCCCC
Q 020573 236 AAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYI 277 (324)
Q Consensus 236 Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNPPYi 277 (324)
|++|++.+++. +++++++|+.+.+....++||+||.||||.
T Consensus 271 a~~N~~~~~~~-~~~~~~~d~~~~~~~~~~~~D~vi~DPPr~ 311 (374)
T TIGR02085 271 AQQSAQMLGLD-NLSFAALDSAKFATAQMSAPELVLVNPPRR 311 (374)
T ss_pred HHHHHHHcCCC-cEEEEECCHHHHHHhcCCCCCEEEECCCCC
Confidence 99999999986 599999999765433234699999999985
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=99.54 E-value=6.5e-14 Score=122.86 Aligned_cols=126 Identities=24% Similarity=0.233 Sum_probs=90.3
Q ss_pred ccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcE---------EEEEeCCHHHHHHHHHHHHH
Q 020573 172 PRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGS---------IIAVDLNPLAAAVAAFNAQR 242 (324)
Q Consensus 172 Prp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~---------V~gvDis~~al~~Ar~N~~~ 242 (324)
|.+..+.+...++... ...++..++|..||||.+.+..+... .+.. ++|+|+++++++.|++|++.
T Consensus 9 ~a~L~~~lA~~ll~la----~~~~~~~vlDP~CGsGtiliEaa~~~-~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ 83 (179)
T PF01170_consen 9 PAPLRPTLAAALLNLA----GWRPGDVVLDPFCGSGTILIEAALMG-ANIPPLNDINELKIIGSDIDPKAVRGARENLKA 83 (179)
T ss_dssp STSS-HHHHHHHHHHT----T--TTS-EEETT-TTSHHHHHHHHHH-TTTSTTTH-CH--EEEEESSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHh----CCCCCCEEeecCCCCCHHHHHHHHHh-hCcccccccccccEEecCCCHHHHHHHHHHHHh
Confidence 4455566666666554 22346789999999999999998875 4545 99999999999999999999
Q ss_pred cCCCCcEEEEEcccccccccCCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCC
Q 020573 243 YGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKP 321 (324)
Q Consensus 243 ~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~Lkp 321 (324)
.++.+.+.+.++|+.+.- ...+.+|.||+||||...-.. . .+.-++|+.+++++.++|++
T Consensus 84 ag~~~~i~~~~~D~~~l~-~~~~~~d~IvtnPPyG~r~~~---~---------------~~~~~ly~~~~~~~~~~l~~ 143 (179)
T PF01170_consen 84 AGVEDYIDFIQWDARELP-LPDGSVDAIVTNPPYGRRLGS---K---------------KDLEKLYRQFLRELKRVLKP 143 (179)
T ss_dssp TT-CGGEEEEE--GGGGG-GTTSBSCEEEEE--STTSHCH---H---------------HHHHHHHHHHHHHHHCHSTT
T ss_pred cccCCceEEEecchhhcc-cccCCCCEEEECcchhhhccC---H---------------HHHHHHHHHHHHHHHHHCCC
Confidence 999988999999998743 335789999999999743210 0 11246788999999999987
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=7.2e-14 Score=138.21 Aligned_cols=119 Identities=14% Similarity=0.180 Sum_probs=92.5
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccccc-CCCCeeEEEEc
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKD-VEGKLSGVVSN 273 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~-~~~~fDlIVsN 273 (324)
++.+|||+|||+|..++.+++.. ++++|+|+|+++.+++.+++|++++|+. ++++++|..+.... ..++||.|++|
T Consensus 244 ~g~~VLDlgaG~G~~t~~la~~~-~~~~v~a~D~s~~~l~~~~~n~~~~g~~--~~~~~~D~~~~~~~~~~~~fD~Vl~D 320 (427)
T PRK10901 244 NGERVLDACAAPGGKTAHILELA-PQAQVVALDIDAQRLERVRENLQRLGLK--ATVIVGDARDPAQWWDGQPFDRILLD 320 (427)
T ss_pred CCCEEEEeCCCCChHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHcCCC--eEEEEcCcccchhhcccCCCCEEEEC
Confidence 46799999999999999999985 5579999999999999999999999874 78999998764221 13579999999
Q ss_pred CCCCCCCCcccchhhhhcccccccccCCCCcH----HHHHHHHHHHhcccCCCCC
Q 020573 274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGL----DYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 274 PPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl----~~~~~il~~a~~~LkpgG~ 324 (324)
|||...+.+ ++.|...+......+ +..+.+++.+.++|||||+
T Consensus 321 ~Pcs~~G~~--------~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~ 367 (427)
T PRK10901 321 APCSATGVI--------RRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGT 367 (427)
T ss_pred CCCCccccc--------ccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCE
Confidence 999865433 233443333222222 4457899999999999995
|
|
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.9e-13 Score=110.80 Aligned_cols=99 Identities=27% Similarity=0.360 Sum_probs=80.8
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNP 274 (324)
.+.+|+|+|||+|.++..+++.+ ++.+|+|+|+++.+++.|++|++.+++. +++++.+|.........++||+|++..
T Consensus 19 ~~~~vldlG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~D~v~~~~ 96 (124)
T TIGR02469 19 PGDVLWDIGAGSGSITIEAARLV-PNGRVYAIERNPEALRLIERNARRFGVS-NIVIVEGDAPEALEDSLPEPDRVFIGG 96 (124)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHC-CCceEEEEcCCHHHHHHHHHHHHHhCCC-ceEEEeccccccChhhcCCCCEEEECC
Confidence 35699999999999999999986 6689999999999999999999998876 499999987643333346899999842
Q ss_pred CCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 275 PYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
+. ..+..+++.+.+.|||||+
T Consensus 97 ~~-----------------------------~~~~~~l~~~~~~Lk~gG~ 117 (124)
T TIGR02469 97 SG-----------------------------GLLQEILEAIWRRLRPGGR 117 (124)
T ss_pred cc-----------------------------hhHHHHHHHHHHHcCCCCE
Confidence 11 1234789999999999995
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=9.5e-14 Score=123.40 Aligned_cols=104 Identities=18% Similarity=0.308 Sum_probs=84.6
Q ss_pred CCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEE
Q 020573 192 DGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVV 271 (324)
Q Consensus 192 ~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIV 271 (324)
...++.+|||+|||+|.+++.+++..++..+|+++|+++.+++.|++|++.+++.+++.++.+|..+.+....++||.|+
T Consensus 37 ~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~ 116 (198)
T PRK00377 37 RLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIF 116 (198)
T ss_pred CCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEE
Confidence 34457799999999999999999876566899999999999999999999999767799999998775444446899999
Q ss_pred EcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 272 SNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 272 sNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
++.. ...+..+++.+.+.|||||+
T Consensus 117 ~~~~-----------------------------~~~~~~~l~~~~~~LkpgG~ 140 (198)
T PRK00377 117 IGGG-----------------------------SEKLKEIISASWEIIKKGGR 140 (198)
T ss_pred ECCC-----------------------------cccHHHHHHHHHHHcCCCcE
Confidence 8631 11234678888999999984
|
|
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.9e-13 Score=122.30 Aligned_cols=93 Identities=22% Similarity=0.329 Sum_probs=75.9
Q ss_pred HHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccc
Q 020573 178 LMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWF 257 (324)
Q Consensus 178 ~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~ 257 (324)
.++..+.+.+ ...++.+|||+|||+|.++..+++.+++.++|+++|+++++++.|++|++.+++.++++++.+|..
T Consensus 59 ~~~~~~~~~l----~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~ 134 (205)
T PRK13944 59 HMVAMMCELI----EPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGK 134 (205)
T ss_pred HHHHHHHHhc----CCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcc
Confidence 3455555554 223467999999999999999999875567999999999999999999999998878999999998
Q ss_pred cccccCCCCeeEEEEcCC
Q 020573 258 GKLKDVEGKLSGVVSNPP 275 (324)
Q Consensus 258 ~~l~~~~~~fDlIVsNPP 275 (324)
+.+.. .++||+|+++-.
T Consensus 135 ~~~~~-~~~fD~Ii~~~~ 151 (205)
T PRK13944 135 RGLEK-HAPFDAIIVTAA 151 (205)
T ss_pred cCCcc-CCCccEEEEccC
Confidence 76543 468999999743
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.6e-13 Score=125.02 Aligned_cols=148 Identities=27% Similarity=0.408 Sum_probs=102.3
Q ss_pred hHHHHHHHHHHHHhcCCCceeEEecccccC------eeeeeeCCcccc---cchHHHHHHHHHHHhhhcCCCCCCCeEEE
Q 020573 131 GLDELYGLWKQRIEKRKPFQYLVGCEHWRD------LVLSVEEGVFIP---RPETELMVDLVSDVLVRDNDGLRDGFWVD 201 (324)
Q Consensus 131 ~~~~~~~~~~~r~~~~~pl~yi~g~~~f~~------l~~~v~~~vliP---rp~te~lve~l~~~l~~~~~~~~~~~VLD 201 (324)
+.++|.+.|++....-+--..+.-...|.. ..+.++|++-+- .+.|..+++.+.... ..+.+|||
T Consensus 52 ~~~dw~~~w~~~~~p~~~g~~~~i~p~~~~~~~~~~~~i~i~p~~afgtg~h~tt~~~l~~l~~~~------~~~~~VLD 125 (250)
T PRK00517 52 EDEDWEREWKKYFHPIRIGDRLWIVPSWEDPPDPDEINIELDPGMAFGTGTHPTTRLCLEALEKLV------LPGKTVLD 125 (250)
T ss_pred CchhHHHHHHHHCCCEEEcCCEEEECCCcCCCCCCeEEEEECCCCccCCCCCHHHHHHHHHHHhhc------CCCCEEEE
Confidence 346788889877643222223333344432 234555554443 466777777666543 24679999
Q ss_pred EcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcCCCCCCCC
Q 020573 202 LGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDD 281 (324)
Q Consensus 202 LGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNPPYi~~~~ 281 (324)
+|||+|.+++.+++. + ..+|+|+|+|+.+++.|++|++.+++.+++.+..+|. +||+|++|.-
T Consensus 126 iGcGsG~l~i~~~~~-g-~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~---------~fD~Vvani~------ 188 (250)
T PRK00517 126 VGCGSGILAIAAAKL-G-AKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGDL---------KADVIVANIL------ 188 (250)
T ss_pred eCCcHHHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCCC---------CcCEEEEcCc------
Confidence 999999999987774 3 3479999999999999999999998865566555432 7999999831
Q ss_pred cccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 282 ISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 282 ~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
.+.+..++.++.++|||||+
T Consensus 189 -----------------------~~~~~~l~~~~~~~LkpgG~ 208 (250)
T PRK00517 189 -----------------------ANPLLELAPDLARLLKPGGR 208 (250)
T ss_pred -----------------------HHHHHHHHHHHHHhcCCCcE
Confidence 12234678889999999995
|
|
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=99.52 E-value=2e-14 Score=126.58 Aligned_cols=117 Identities=25% Similarity=0.374 Sum_probs=86.3
Q ss_pred cccCeeeeeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHH
Q 020573 157 HWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVA 236 (324)
Q Consensus 157 ~f~~l~~~v~~~vliPrp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~A 236 (324)
.|.|..+...++ -.-||.+..+-+.+.+++ ... ...+.+||||+||||++++....+ ...+|+.||.|+.++...
T Consensus 7 ~~kgr~l~~p~~-~~~RPT~drvrealFniL-~~~-~~~g~~vLDLFaGSGalGlEALSR--GA~~v~fVE~~~~a~~~i 81 (183)
T PF03602_consen 7 KYKGRKLKTPKG-DNTRPTTDRVREALFNIL-QPR-NLEGARVLDLFAGSGALGLEALSR--GAKSVVFVEKNRKAIKII 81 (183)
T ss_dssp TTTT-EEE-TT---TS-SSSHHHHHHHHHHH-HCH--HTT-EEEETT-TTSHHHHHHHHT--T-SEEEEEES-HHHHHHH
T ss_pred ecCCCEecCCCC-CCcCCCcHHHHHHHHHHh-ccc-ccCCCeEEEcCCccCccHHHHHhc--CCCeEEEEECCHHHHHHH
Confidence 467777776655 344888888889888888 322 246789999999999999998886 457999999999999999
Q ss_pred HHHHHHcCCCCcEEEEEcccccccccC---CCCeeEEEEcCCCCC
Q 020573 237 AFNAQRYGLQDIIEIRQGSWFGKLKDV---EGKLSGVVSNPPYIP 278 (324)
Q Consensus 237 r~N~~~~gl~~rv~~~~gD~~~~l~~~---~~~fDlIVsNPPYi~ 278 (324)
++|++..++.++++++.+|.+..+... ..+||+|+.+|||..
T Consensus 82 ~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflDPPY~~ 126 (183)
T PF03602_consen 82 KKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLDPPYAK 126 (183)
T ss_dssp HHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE--STTS
T ss_pred HHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEECCCccc
Confidence 999999999888999999987765432 468999999999974
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.8e-13 Score=123.20 Aligned_cols=92 Identities=20% Similarity=0.271 Sum_probs=75.2
Q ss_pred HHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccc
Q 020573 178 LMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWF 257 (324)
Q Consensus 178 ~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~ 257 (324)
.++..+++.+ ...++.+|||+|||+|.++..+++..+++++|+++|+++++++.|++|++++++. +++++.+|..
T Consensus 64 ~~~~~~~~~l----~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~-~v~~~~~d~~ 138 (215)
T TIGR00080 64 HMVAMMTELL----ELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLD-NVIVIVGDGT 138 (215)
T ss_pred HHHHHHHHHh----CCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCC-CeEEEECCcc
Confidence 3455555555 2345679999999999999999998755678999999999999999999999985 5999999998
Q ss_pred cccccCCCCeeEEEEcCC
Q 020573 258 GKLKDVEGKLSGVVSNPP 275 (324)
Q Consensus 258 ~~l~~~~~~fDlIVsNPP 275 (324)
+.... .++||+|+++++
T Consensus 139 ~~~~~-~~~fD~Ii~~~~ 155 (215)
T TIGR00080 139 QGWEP-LAPYDRIYVTAA 155 (215)
T ss_pred cCCcc-cCCCCEEEEcCC
Confidence 75443 358999999865
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.51 E-value=8.8e-14 Score=126.68 Aligned_cols=101 Identities=19% Similarity=0.292 Sum_probs=86.0
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNP 274 (324)
++.+|||+|||||-+++.+++..+ .++|+|+|+|+.|++.|++.+...+..+ ++|+++|+.+ ++..+.+||+|.+.
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~~~~-i~fv~~dAe~-LPf~D~sFD~vt~~- 126 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGVQN-VEFVVGDAEN-LPFPDNSFDAVTIS- 126 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccCccc-eEEEEechhh-CCCCCCccCEEEee-
Confidence 578999999999999999999974 8999999999999999999999988887 9999999987 55557899999983
Q ss_pred CCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 275 PYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
| ..++ +..+...|+++.|+|||||.
T Consensus 127 -f------------glrn------------v~d~~~aL~E~~RVlKpgG~ 151 (238)
T COG2226 127 -F------------GLRN------------VTDIDKALKEMYRVLKPGGR 151 (238)
T ss_pred -e------------hhhc------------CCCHHHHHHHHHHhhcCCeE
Confidence 1 1122 23456889999999999993
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.7e-13 Score=135.47 Aligned_cols=121 Identities=14% Similarity=0.198 Sum_probs=93.0
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc-cCCCCeeEEEEc
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK-DVEGKLSGVVSN 273 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~-~~~~~fDlIVsN 273 (324)
++.+|||+|||+|..++.+++.. ++++|+|+|+++++++.+++|++++|+..++.+..+|..+... ...++||.|++|
T Consensus 238 ~g~~VLDlcag~G~kt~~la~~~-~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~VllD 316 (426)
T TIGR00563 238 NEETILDACAAPGGKTTHILELA-PQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILLD 316 (426)
T ss_pred CCCeEEEeCCCccHHHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEEEc
Confidence 46799999999999999999987 4789999999999999999999999987445557788754321 013579999999
Q ss_pred CCCCCCCCcccchhhhhcccccccccCCCCcH----HHHHHHHHHHhcccCCCCC
Q 020573 274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGL----DYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 274 PPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl----~~~~~il~~a~~~LkpgG~ 324 (324)
||+...+.+ ++.|.+.+....+.+ ...+.++..|.++|||||+
T Consensus 317 aPcSg~G~~--------~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~ 363 (426)
T TIGR00563 317 APCSATGVI--------RRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGT 363 (426)
T ss_pred CCCCCCccc--------ccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcE
Confidence 999877654 334443333222222 3347899999999999995
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.1e-13 Score=126.47 Aligned_cols=114 Identities=15% Similarity=0.210 Sum_probs=90.4
Q ss_pred hHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEc
Q 020573 175 ETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQG 254 (324)
Q Consensus 175 ~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~g 254 (324)
++..+...+.... ++++|||+|||+|+.++.++...+++++|+++|+++++++.|++|++++|+.++++++.+
T Consensus 55 ~~g~~L~~l~~~~-------~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~g 127 (234)
T PLN02781 55 DEGLFLSMLVKIM-------NAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQS 127 (234)
T ss_pred HHHHHHHHHHHHh-------CCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEc
Confidence 3444455544433 366999999999999999999876688999999999999999999999999999999999
Q ss_pred ccccccccC-----CCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 255 SWFGKLKDV-----EGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 255 D~~~~l~~~-----~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
|+.+.+..+ .++||+|+.|.+- ..|..+++.+.++|+|||+
T Consensus 128 da~~~L~~l~~~~~~~~fD~VfiDa~k-----------------------------~~y~~~~~~~~~ll~~GG~ 173 (234)
T PLN02781 128 DALSALDQLLNNDPKPEFDFAFVDADK-----------------------------PNYVHFHEQLLKLVKVGGI 173 (234)
T ss_pred cHHHHHHHHHhCCCCCCCCEEEECCCH-----------------------------HHHHHHHHHHHHhcCCCeE
Confidence 998765432 3689999996220 1233567888899999985
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.50 E-value=7.9e-14 Score=127.23 Aligned_cols=102 Identities=25% Similarity=0.323 Sum_probs=73.1
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNP 274 (324)
++.+|||+|||||.++..+++..+++++|+|+|+|+.|++.|++.++..+.. +|+++++|..+ ++..+++||+|++-
T Consensus 47 ~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~-~i~~v~~da~~-lp~~d~sfD~v~~~- 123 (233)
T PF01209_consen 47 PGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQ-NIEFVQGDAED-LPFPDNSFDAVTCS- 123 (233)
T ss_dssp S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT---SEEEEE-BTTB---S-TT-EEEEEEE-
T ss_pred CCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCC-CeeEEEcCHHH-hcCCCCceeEEEHH-
Confidence 4679999999999999999998777889999999999999999999998876 69999999977 44446899999982
Q ss_pred CCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 275 PYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
| ..++-| ...+.++++.++|||||.
T Consensus 124 -f------------glrn~~------------d~~~~l~E~~RVLkPGG~ 148 (233)
T PF01209_consen 124 -F------------GLRNFP------------DRERALREMYRVLKPGGR 148 (233)
T ss_dssp -S-------------GGG-S------------SHHHHHHHHHHHEEEEEE
T ss_pred -h------------hHHhhC------------CHHHHHHHHHHHcCCCeE
Confidence 0 112111 234688999999999994
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.3e-13 Score=118.42 Aligned_cols=96 Identities=30% Similarity=0.471 Sum_probs=75.5
Q ss_pred cccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEE
Q 020573 171 IPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIE 250 (324)
Q Consensus 171 iPrp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~ 250 (324)
+|.+.+..++..+. + .....+..|+|+|||||.+++.++.. + ..+|+|+|++++|++.+++|+.+. ..++.
T Consensus 26 Tp~~~Aa~il~~a~--~---~g~l~g~~V~DlG~GTG~La~ga~~l-G-a~~V~~vdiD~~a~ei~r~N~~~l--~g~v~ 96 (198)
T COG2263 26 TPAPLAAYILWVAY--L---RGDLEGKTVLDLGAGTGILAIGAALL-G-ASRVLAVDIDPEALEIARANAEEL--LGDVE 96 (198)
T ss_pred CChHHHHHHHHHHH--H---cCCcCCCEEEEcCCCcCHHHHHHHhc-C-CcEEEEEecCHHHHHHHHHHHHhh--CCceE
Confidence 34455555554443 1 13456778999999999999999885 3 479999999999999999999983 35699
Q ss_pred EEEcccccccccCCCCeeEEEEcCCCCCC
Q 020573 251 IRQGSWFGKLKDVEGKLSGVVSNPPYIPS 279 (324)
Q Consensus 251 ~~~gD~~~~l~~~~~~fDlIVsNPPYi~~ 279 (324)
|+.+|..+. .+++|.+++||||...
T Consensus 97 f~~~dv~~~----~~~~dtvimNPPFG~~ 121 (198)
T COG2263 97 FVVADVSDF----RGKFDTVIMNPPFGSQ 121 (198)
T ss_pred EEEcchhhc----CCccceEEECCCCccc
Confidence 999998653 4789999999999754
|
|
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.9e-13 Score=135.30 Aligned_cols=123 Identities=20% Similarity=0.266 Sum_probs=98.4
Q ss_pred CCceeEEecccc----cCeeeeeeCCcccc--cchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCC
Q 020573 147 KPFQYLVGCEHW----RDLVLSVEEGVFIP--RPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSK 220 (324)
Q Consensus 147 ~pl~yi~g~~~f----~~l~~~v~~~vliP--rp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~ 220 (324)
++...+.|+..+ .+..|.++++.|++ +..++.+++.+.+++ ...++.+|||+|||+|.+++.+++..
T Consensus 242 ~~~~~l~G~~~~~~~~~~~~~~~~~~~F~Q~N~~~~~~l~~~~~~~l----~~~~~~~vLDl~cG~G~~sl~la~~~--- 314 (431)
T TIGR00479 242 EETEQIAGEGPIYEKSGDLSFSLSARDFFQVNSGQNEKLVDRALEAL----ELQGEELVVDAYCGVGTFTLPLAKQA--- 314 (431)
T ss_pred CceEEEeCCCeEEEEECCEEEEECCCceeecCHHHHHHHHHHHHHHh----ccCCCCEEEEcCCCcCHHHHHHHHhC---
Confidence 455566665433 37789999999997 356788888888776 22345689999999999999999874
Q ss_pred cEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccccc---CCCCeeEEEEcCCCC
Q 020573 221 GSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKD---VEGKLSGVVSNPPYI 277 (324)
Q Consensus 221 ~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~---~~~~fDlIVsNPPYi 277 (324)
.+|+|+|+++.|++.|++|++.+++. +++++++|+.+.+.. ..++||+|+.|||+.
T Consensus 315 ~~V~~vE~~~~av~~a~~n~~~~~~~-nv~~~~~d~~~~l~~~~~~~~~~D~vi~dPPr~ 373 (431)
T TIGR00479 315 KSVVGIEVVPESVEKAQQNAELNGIA-NVEFLAGTLETVLPKQPWAGQIPDVLLLDPPRK 373 (431)
T ss_pred CEEEEEEcCHHHHHHHHHHHHHhCCC-ceEEEeCCHHHHHHHHHhcCCCCCEEEECcCCC
Confidence 58999999999999999999999986 599999998764332 124799999999985
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.6e-13 Score=133.54 Aligned_cols=121 Identities=22% Similarity=0.276 Sum_probs=93.7
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc---cCCCCeeEEE
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---DVEGKLSGVV 271 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~---~~~~~fDlIV 271 (324)
++.+|||+|||+|..++.+++..+..++|+|+|+++.+++.+++|++++|+.+ ++++++|..+... ...++||.|+
T Consensus 252 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~-v~~~~~D~~~~~~~~~~~~~~fD~Vl 330 (434)
T PRK14901 252 PGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKS-IKILAADSRNLLELKPQWRGYFDRIL 330 (434)
T ss_pred CcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCe-EEEEeCChhhcccccccccccCCEEE
Confidence 46799999999999999999986556799999999999999999999999975 9999999876431 1236899999
Q ss_pred EcCCCCCCCCcccchhhhhcccccccccCCCCcH----HHHHHHHHHHhcccCCCCC
Q 020573 272 SNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGL----DYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 272 sNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl----~~~~~il~~a~~~LkpgG~ 324 (324)
+|||+...+.+ ++.|...+.-..+.+ ...+.+++.+.++|||||.
T Consensus 331 ~DaPCSg~G~~--------~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~ 379 (434)
T PRK14901 331 LDAPCSGLGTL--------HRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGT 379 (434)
T ss_pred EeCCCCccccc--------ccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCE
Confidence 99998754433 333433222222222 2246899999999999994
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.3e-13 Score=128.91 Aligned_cols=102 Identities=25% Similarity=0.285 Sum_probs=83.3
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEc
Q 020573 194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN 273 (324)
Q Consensus 194 ~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsN 273 (324)
.++.+|||+|||+|.++..+++.+ +++|+|+|+|+.+++.|+++++..++.++++++++|+.+. +...++||+|+++
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~--g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~-~~~~~~FD~V~s~ 193 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY--GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQ-PFEDGQFDLVWSM 193 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccC-CCCCCCccEEEEC
Confidence 356799999999999999999975 5799999999999999999999999888899999998763 3234789999995
Q ss_pred CCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 274 PPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
- +..|-|. ...+++++.++|||||+
T Consensus 194 ~--------------~~~h~~d------------~~~~l~e~~rvLkpGG~ 218 (340)
T PLN02244 194 E--------------SGEHMPD------------KRKFVQELARVAAPGGR 218 (340)
T ss_pred C--------------chhccCC------------HHHHHHHHHHHcCCCcE
Confidence 1 2233221 23688999999999994
|
|
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.1e-13 Score=120.61 Aligned_cols=116 Identities=17% Similarity=0.158 Sum_probs=92.3
Q ss_pred cccCeeeeeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHH
Q 020573 157 HWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVA 236 (324)
Q Consensus 157 ~f~~l~~~v~~~vliPrp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~A 236 (324)
.|.+..+...++.. -||.+..+.+.+..++ .. ...+.++||+|||||.+++.++.+. ..+|+++|+++.+++.+
T Consensus 15 ~~kg~~l~~p~~~~-~rpt~~~vrea~f~~l-~~--~~~g~~vLDLfaGsG~lglea~srg--a~~v~~vE~~~~a~~~~ 88 (189)
T TIGR00095 15 WRGGRLLKLPPGGS-TRPTTRVVRELFFNIL-RP--EIQGAHLLDVFAGSGLLGEEALSRG--AKVAFLEEDDRKANQTL 88 (189)
T ss_pred hhCCcccCCCCCCC-CCCchHHHHHHHHHHH-HH--hcCCCEEEEecCCCcHHHHHHHhCC--CCEEEEEeCCHHHHHHH
Confidence 46677777666543 4788888888877776 21 2346799999999999999999972 35899999999999999
Q ss_pred HHHHHHcCCCCcEEEEEcccccccccC---CCCeeEEEEcCCCCC
Q 020573 237 AFNAQRYGLQDIIEIRQGSWFGKLKDV---EGKLSGVVSNPPYIP 278 (324)
Q Consensus 237 r~N~~~~gl~~rv~~~~gD~~~~l~~~---~~~fDlIVsNPPYi~ 278 (324)
++|++.+++.++++++++|.++.+... ...||+|+.+|||..
T Consensus 89 ~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~DPPy~~ 133 (189)
T TIGR00095 89 KENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLDPPFFN 133 (189)
T ss_pred HHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEECcCCCC
Confidence 999999998878999999997754322 124899999999963
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.48 E-value=7.2e-13 Score=116.51 Aligned_cols=96 Identities=25% Similarity=0.324 Sum_probs=79.0
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNP 274 (324)
++.+|||+|||+|.+++.+++.. ++.+|+++|+|+.+++.|++|++++++. +++++.+|....+ .++||+|+++-
T Consensus 31 ~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~n~~~~~~~-~i~~~~~d~~~~~---~~~~D~v~~~~ 105 (187)
T PRK08287 31 RAKHLIDVGAGTGSVSIEAALQF-PSLQVTAIERNPDALRLIKENRQRFGCG-NIDIIPGEAPIEL---PGKADAIFIGG 105 (187)
T ss_pred CCCEEEEECCcCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhCCC-CeEEEecCchhhc---CcCCCEEEECC
Confidence 56799999999999999999985 7789999999999999999999999875 5999999975433 35899999852
Q ss_pred CCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 275 PYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
.. ..+..+++.+.++|+|||+
T Consensus 106 ~~-----------------------------~~~~~~l~~~~~~Lk~gG~ 126 (187)
T PRK08287 106 SG-----------------------------GNLTAIIDWSLAHLHPGGR 126 (187)
T ss_pred Cc-----------------------------cCHHHHHHHHHHhcCCCeE
Confidence 10 0123578888999999984
|
|
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=99.47 E-value=5.9e-13 Score=124.68 Aligned_cols=159 Identities=22% Similarity=0.372 Sum_probs=82.3
Q ss_pred cCeee-eeeCCccccc-chHHHHHHHHHHHhhhcCCC-CCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHH
Q 020573 159 RDLVL-SVEEGVFIPR-PETELMVDLVSDVLVRDNDG-LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAV 235 (324)
Q Consensus 159 ~~l~~-~v~~~vliPr-p~te~lve~l~~~l~~~~~~-~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~ 235 (324)
+|+.+ .+.++.|.|. |..--++.++.+++...... ....++||+|||..||--.|+... .+++++|+|+++.+++.
T Consensus 63 fgl~~wdiP~~~LcP~iP~R~nYi~~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~-~~W~fvaTdID~~sl~~ 141 (299)
T PF05971_consen 63 FGLDVWDIPEGRLCPPIPNRLNYIHWIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKL-YGWSFVATDIDPKSLES 141 (299)
T ss_dssp H--------TTS----HHHHHHHHHHHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHH-H--EEEEEES-HHHHHH
T ss_pred cCCccccCCCCCcCCCCchhHHHHHHHHHHhhccccccccceEeecCCccHHHHHHHHhhhh-cCCeEEEecCCHHHHHH
Confidence 46766 7899999997 77777888888877322111 124689999999998864444443 47999999999999999
Q ss_pred HHHHHHHc-CCCCcEEEEEc----ccccccccCCCCeeEEEEcCCCCCCCCcccch--hhh---hc-----ccccccccC
Q 020573 236 AAFNAQRY-GLQDIIEIRQG----SWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQ--VEV---GK-----HEPRLALDG 300 (324)
Q Consensus 236 Ar~N~~~~-gl~~rv~~~~g----D~~~~l~~~~~~fDlIVsNPPYi~~~~~~~l~--~ev---~~-----~eP~~aL~g 300 (324)
|++|+++| +++++|+++.. +++..+....+.||+.+|||||..+.+...-. ... .+ ..|..+..|
T Consensus 142 A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dftmCNPPFy~s~~e~~~~~~~k~~nl~~~~~~~~~p~~~~~G 221 (299)
T PF05971_consen 142 ARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFTMCNPPFYSSQEEAEAGTERKWKNLGRPNKKRSPPKLNFTG 221 (299)
T ss_dssp HHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEEEE-----SS-------------------------------
T ss_pred HHHHHHhccccccceEEEEcCCccccchhhhcccceeeEEecCCccccChhhhcccccccccccccccccccCccccCCC
Confidence 99999999 99999999865 34554444446899999999998775432111 000 01 246666555
Q ss_pred CCCc-------HHHHHHHHHHHhcc
Q 020573 301 GVDG-------LDYLLHLCNGTASM 318 (324)
Q Consensus 301 g~dG-------l~~~~~il~~a~~~ 318 (324)
...- +.++.++++++..+
T Consensus 222 ~~~El~~~GGEv~FV~rMI~ES~~~ 246 (299)
T PF05971_consen 222 QSNELWCEGGEVAFVKRMIKESLQL 246 (299)
T ss_dssp -TTTTHHHHTHHHHHHHHHHHHHHH
T ss_pred CcceEEcCCccHHHHHHHHHHHHHh
Confidence 4322 67888888887643
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.6e-12 Score=117.62 Aligned_cols=102 Identities=17% Similarity=0.224 Sum_probs=82.3
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNP 274 (324)
++.+|||+|||+|.++..+++.+++.++|+|+|+++++++.|++|++..++. +++++++|..+. ....++||+|+++-
T Consensus 45 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~-~~~~~~fD~V~~~~ 122 (231)
T TIGR02752 45 AGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLH-NVELVHGNAMEL-PFDDNSFDYVTIGF 122 (231)
T ss_pred CCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCC-ceEEEEechhcC-CCCCCCccEEEEec
Confidence 4679999999999999999998767789999999999999999999888874 699999998763 22246899999964
Q ss_pred CCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 275 PYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
.+. +-+ .+..+++++.+.|+|||+
T Consensus 123 ~l~--------------~~~------------~~~~~l~~~~~~Lk~gG~ 146 (231)
T TIGR02752 123 GLR--------------NVP------------DYMQVLREMYRVVKPGGK 146 (231)
T ss_pred ccc--------------cCC------------CHHHHHHHHHHHcCcCeE
Confidence 321 111 123678889999999994
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.4e-13 Score=119.67 Aligned_cols=108 Identities=18% Similarity=0.171 Sum_probs=82.7
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc--cCCCCeeEEEE
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK--DVEGKLSGVVS 272 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~--~~~~~fDlIVs 272 (324)
...+|||+|||+|.++..+++.+ ++.+|+|+|+|+++++.|++|++.+++. +++++++|+.+.+. ...+.||+|++
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~-p~~~v~gVD~s~~~i~~a~~~~~~~~~~-~v~~~~~d~~~~l~~~~~~~~~D~V~~ 117 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKAN-PDINFIGIEVHEPGVGKALKKIEEEGLT-NLRLLCGDAVEVLLDMFPDGSLDRIYL 117 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHC-CCccEEEEEechHHHHHHHHHHHHcCCC-CEEEEecCHHHHHHHHcCccccceEEE
Confidence 35689999999999999999986 7789999999999999999999998884 59999999833332 12468999999
Q ss_pred cCCC--CCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 273 NPPY--IPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 273 NPPY--i~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
|.|. .... .+ ........+++++.++|||||+
T Consensus 118 ~~~~p~~~~~----------~~----------~~~~~~~~~l~~i~~~LkpgG~ 151 (202)
T PRK00121 118 NFPDPWPKKR----------HH----------KRRLVQPEFLALYARKLKPGGE 151 (202)
T ss_pred ECCCCCCCcc----------cc----------ccccCCHHHHHHHHHHcCCCCE
Confidence 8642 2110 00 0011234788999999999994
|
|
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.45 E-value=7.3e-13 Score=122.95 Aligned_cols=103 Identities=24% Similarity=0.258 Sum_probs=88.1
Q ss_pred CCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEE
Q 020573 192 DGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVV 271 (324)
Q Consensus 192 ~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIV 271 (324)
...++.+|||+|||.|.+++.+|+++ +.+|+|+++|+++.+.+++.++..|+++++++...|+.+. .++||-||
T Consensus 69 ~L~~G~~lLDiGCGWG~l~~~aA~~y--~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~----~e~fDrIv 142 (283)
T COG2230 69 GLKPGMTLLDIGCGWGGLAIYAAEEY--GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDF----EEPFDRIV 142 (283)
T ss_pred CCCCCCEEEEeCCChhHHHHHHHHHc--CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecccccc----ccccceee
Confidence 55678899999999999999999996 6899999999999999999999999998999999998764 35699999
Q ss_pred EcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 272 SNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 272 sNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
| -++..| -|.+.+..+++.+.++|+|||.
T Consensus 143 S--------------vgmfEh----------vg~~~~~~ff~~~~~~L~~~G~ 171 (283)
T COG2230 143 S--------------VGMFEH----------VGKENYDDFFKKVYALLKPGGR 171 (283)
T ss_pred e--------------hhhHHH----------hCcccHHHHHHHHHhhcCCCce
Confidence 9 222222 1345677899999999999994
|
|
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.5e-12 Score=120.83 Aligned_cols=103 Identities=21% Similarity=0.199 Sum_probs=78.9
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHH--cCCCCcEEEEEcccccccccCCCCeeEEEE
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR--YGLQDIIEIRQGSWFGKLKDVEGKLSGVVS 272 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~--~gl~~rv~~~~gD~~~~l~~~~~~fDlIVs 272 (324)
++.+|||+|||+|.++..+++.++++++|+|+|+|++|++.|+++... .+...+++++++|..+ ++..+++||+|++
T Consensus 73 ~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~-lp~~~~sfD~V~~ 151 (261)
T PLN02233 73 MGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATD-LPFDDCYFDAITM 151 (261)
T ss_pred CCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEccccc-CCCCCCCEeEEEE
Confidence 467999999999999999998765678999999999999999987642 2233469999999876 3333568999998
Q ss_pred cCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 273 NPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 273 NPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
+--+ +|-+ ....+++++.++|||||.
T Consensus 152 ~~~l--------------~~~~------------d~~~~l~ei~rvLkpGG~ 177 (261)
T PLN02233 152 GYGL--------------RNVV------------DRLKAMQEMYRVLKPGSR 177 (261)
T ss_pred eccc--------------ccCC------------CHHHHHHHHHHHcCcCcE
Confidence 5211 2211 123688999999999994
|
|
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.44 E-value=2e-12 Score=113.14 Aligned_cols=120 Identities=20% Similarity=0.341 Sum_probs=99.4
Q ss_pred EEecccccCeeeeeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHH
Q 020573 152 LVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPL 231 (324)
Q Consensus 152 i~g~~~f~~l~~~v~~~vliPrp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~ 231 (324)
|+| -.|.|..+.+.++ ---||.+..+-+.+.+++ ... ...+.++||+++|||++++..+.+ ...+++.||.|..
T Consensus 4 Ii~-G~~kgr~L~~p~~-~~~RPT~drVREalFNil-~~~-~i~g~~~LDlFAGSGaLGlEAlSR--GA~~~~~vE~~~~ 77 (187)
T COG0742 4 IIG-GKYKGRKLKTPDG-PGTRPTTDRVREALFNIL-APD-EIEGARVLDLFAGSGALGLEALSR--GAARVVFVEKDRK 77 (187)
T ss_pred EEe-ccccCCcccCCCC-CCcCCCchHHHHHHHHhc-ccc-ccCCCEEEEecCCccHhHHHHHhC--CCceEEEEecCHH
Confidence 444 3577888887776 233888889999999888 321 356889999999999999999997 4579999999999
Q ss_pred HHHHHHHHHHHcCCCCcEEEEEcccccccccCCCC--eeEEEEcCCCC
Q 020573 232 AAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGK--LSGVVSNPPYI 277 (324)
Q Consensus 232 al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~--fDlIVsNPPYi 277 (324)
++...++|++..++..+++++.+|....+.....+ ||+|+.+|||.
T Consensus 78 a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflDPPy~ 125 (187)
T COG0742 78 AVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLDPPYA 125 (187)
T ss_pred HHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeCCCCc
Confidence 99999999999998889999999998665554444 99999999997
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.44 E-value=2e-13 Score=123.10 Aligned_cols=99 Identities=25% Similarity=0.341 Sum_probs=84.0
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEc
Q 020573 194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN 273 (324)
Q Consensus 194 ~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsN 273 (324)
..+.+|||+|||-|.++..+|+. ++.|+|+|++++++++|+..+...++. +.+.+....+... ..++||+|+|
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~---Ga~VtgiD~se~~I~~Ak~ha~e~gv~--i~y~~~~~edl~~-~~~~FDvV~c- 130 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARL---GASVTGIDASEKPIEVAKLHALESGVN--IDYRQATVEDLAS-AGGQFDVVTC- 130 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHC---CCeeEEecCChHHHHHHHHhhhhcccc--ccchhhhHHHHHh-cCCCccEEEE-
Confidence 45789999999999999999996 489999999999999999999999875 7777777766332 2379999999
Q ss_pred CCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 274 PPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
-||..|-|.- +.|+..+.+++||||+
T Consensus 131 -------------mEVlEHv~dp------------~~~~~~c~~lvkP~G~ 156 (243)
T COG2227 131 -------------MEVLEHVPDP------------ESFLRACAKLVKPGGI 156 (243)
T ss_pred -------------hhHHHccCCH------------HHHHHHHHHHcCCCcE
Confidence 4888886654 4689999999999995
|
|
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.43 E-value=6.6e-13 Score=128.70 Aligned_cols=108 Identities=20% Similarity=0.331 Sum_probs=89.6
Q ss_pred eeeeeeCCccccc--chHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 020573 161 LVLSVEEGVFIPR--PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF 238 (324)
Q Consensus 161 l~~~v~~~vliPr--p~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~ 238 (324)
+.|.++++.|++- ..++.+++.+.+++ . . .+.++||++||+|.+++.+++.. .+|+|+|+++.|++.|++
T Consensus 175 ~~~~~~~~sF~Q~N~~~~e~l~~~v~~~~-~---~-~~~~vLDl~~G~G~~sl~la~~~---~~v~~vE~~~~ai~~a~~ 246 (362)
T PRK05031 175 FIYRQVENSFTQPNAAVNEKMLEWALDAT-K---G-SKGDLLELYCGNGNFTLALARNF---RRVLATEISKPSVAAAQY 246 (362)
T ss_pred EEEEeCCCCeeccCHHHHHHHHHHHHHHh-h---c-CCCeEEEEeccccHHHHHHHhhC---CEEEEEECCHHHHHHHHH
Confidence 6788889999873 57889999988877 2 1 12479999999999999999874 589999999999999999
Q ss_pred HHHHcCCCCcEEEEEcccccccccC---------------CCCeeEEEEcCCCC
Q 020573 239 NAQRYGLQDIIEIRQGSWFGKLKDV---------------EGKLSGVVSNPPYI 277 (324)
Q Consensus 239 N~~~~gl~~rv~~~~gD~~~~l~~~---------------~~~fDlIVsNPPYi 277 (324)
|++.+++. +++++.+|+.+.+..+ ..+||+|+.||||.
T Consensus 247 N~~~~~~~-~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR~ 299 (362)
T PRK05031 247 NIAANGID-NVQIIRMSAEEFTQAMNGVREFNRLKGIDLKSYNFSTIFVDPPRA 299 (362)
T ss_pred HHHHhCCC-cEEEEECCHHHHHHHHhhcccccccccccccCCCCCEEEECCCCC
Confidence 99999986 5999999997754321 12589999999983
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=9e-13 Score=121.55 Aligned_cols=101 Identities=19% Similarity=0.155 Sum_probs=81.1
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNP 274 (324)
.+.+|||+|||+|.++..+++. +.+|+|+|+|+++++.|++++...++.++++++++|+.+......++||+|+++-
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~---g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~ 120 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAEL---GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHA 120 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehh
Confidence 3569999999999999999986 3799999999999999999999999887899999998764322346899999953
Q ss_pred CCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 275 PYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
.+ .|- .....+++++.++|||||+
T Consensus 121 vl--------------~~~------------~~~~~~l~~~~~~LkpgG~ 144 (255)
T PRK11036 121 VL--------------EWV------------ADPKSVLQTLWSVLRPGGA 144 (255)
T ss_pred HH--------------Hhh------------CCHHHHHHHHHHHcCCCeE
Confidence 21 221 1113578899999999995
|
|
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.2e-13 Score=106.84 Aligned_cols=99 Identities=26% Similarity=0.351 Sum_probs=74.5
Q ss_pred EEEEcCCccHHHHHHHHHh--CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcCCC
Q 020573 199 WVDLGTGSGAIAIGIARVL--GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPY 276 (324)
Q Consensus 199 VLDLGcGsG~iai~la~~~--~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNPPY 276 (324)
|||+|||+|..+..+++.+ ++..+++|+|+|++|++.|+++....+. +++++++|+.+ +....++||+|+++=
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~--~~~~~~~D~~~-l~~~~~~~D~v~~~~-- 75 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP--KVRFVQADARD-LPFSDGKFDLVVCSG-- 75 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT--TSEEEESCTTC-HHHHSSSEEEEEE-T--
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC--ceEEEECCHhH-CcccCCCeeEEEEcC--
Confidence 7999999999999999986 3347999999999999999999988766 59999999977 444457999999920
Q ss_pred CCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCC
Q 020573 277 IPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDK 323 (324)
Q Consensus 277 i~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG 323 (324)
..+ .|-+ -+.++.++++..++|||||
T Consensus 76 ---~~~--------~~~~----------~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 76 ---LSL--------HHLS----------PEELEALLRRIARLLRPGG 101 (101)
T ss_dssp ---TGG--------GGSS----------HHHHHHHHHHHHHTEEEEE
T ss_pred ---Ccc--------CCCC----------HHHHHHHHHHHHHHhCCCC
Confidence 001 1111 2345689999999999998
|
|
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.43 E-value=9.9e-13 Score=122.70 Aligned_cols=103 Identities=24% Similarity=0.295 Sum_probs=78.9
Q ss_pred CCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEE
Q 020573 192 DGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVV 271 (324)
Q Consensus 192 ~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIV 271 (324)
...++.+|||+|||.|.+++.+|+++ +++|+|+.+|++..+.|++.+++.|+.+++++...|+.+. .++||.||
T Consensus 59 ~l~~G~~vLDiGcGwG~~~~~~a~~~--g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~----~~~fD~Iv 132 (273)
T PF02353_consen 59 GLKPGDRVLDIGCGWGGLAIYAAERY--GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDL----PGKFDRIV 132 (273)
T ss_dssp T--TT-EEEEES-TTSHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG-------S-SEEE
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHc--CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeecccc----CCCCCEEE
Confidence 55678899999999999999999996 5899999999999999999999999999999999998762 24999999
Q ss_pred EcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 272 SNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 272 sNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
| -++..|- |-..+..+++.+.++|||||.
T Consensus 133 S--------------i~~~Ehv----------g~~~~~~~f~~~~~~LkpgG~ 161 (273)
T PF02353_consen 133 S--------------IEMFEHV----------GRKNYPAFFRKISRLLKPGGR 161 (273)
T ss_dssp E--------------ESEGGGT----------CGGGHHHHHHHHHHHSETTEE
T ss_pred E--------------Eechhhc----------ChhHHHHHHHHHHHhcCCCcE
Confidence 9 2222331 234567899999999999994
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.8e-12 Score=116.62 Aligned_cols=105 Identities=22% Similarity=0.297 Sum_probs=78.9
Q ss_pred CeeeeeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHH
Q 020573 160 DLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFN 239 (324)
Q Consensus 160 ~l~~~v~~~vliPrp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N 239 (324)
+..+.+..+..+..| .++..+.+.+ ...++.+|||+|||+|+++..+++..+++++|+++|+++++++.|++|
T Consensus 48 d~~~~~~~g~~~~~p---~~~~~~~~~l----~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~ 120 (212)
T PRK13942 48 DTPLEIGYGQTISAI---HMVAIMCELL----DLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKT 120 (212)
T ss_pred CCCccCCCCCEeCcH---HHHHHHHHHc----CCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHH
Confidence 444444444333222 3444444444 233567999999999999999999876668999999999999999999
Q ss_pred HHHcCCCCcEEEEEcccccccccCCCCeeEEEEc
Q 020573 240 AQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN 273 (324)
Q Consensus 240 ~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsN 273 (324)
++.+++. +++++.+|..+.... .+.||+|+++
T Consensus 121 l~~~g~~-~v~~~~gd~~~~~~~-~~~fD~I~~~ 152 (212)
T PRK13942 121 LKKLGYD-NVEVIVGDGTLGYEE-NAPYDRIYVT 152 (212)
T ss_pred HHHcCCC-CeEEEECCcccCCCc-CCCcCEEEEC
Confidence 9999885 599999998765433 3689999984
|
|
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=99.42 E-value=6.8e-13 Score=125.63 Aligned_cols=142 Identities=23% Similarity=0.339 Sum_probs=89.5
Q ss_pred cccccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHh------CCCcEEEEEeCCHHHHHHHHHHHHH
Q 020573 169 VFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVL------GSKGSIIAVDLNPLAAAVAAFNAQR 242 (324)
Q Consensus 169 vliPrp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~------~p~~~V~gvDis~~al~~Ar~N~~~ 242 (324)
+|.|+..+.++++.+. ...+.+|+|++||+|.+.+++.+.+ ....+++|+|+++.++.+|+.|+..
T Consensus 28 ~~TP~~i~~l~~~~~~--------~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l 99 (311)
T PF02384_consen 28 FYTPREIVDLMVKLLN--------PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLL 99 (311)
T ss_dssp C---HHHHHHHHHHHT--------T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHH
T ss_pred eehHHHHHHHHHhhhh--------ccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhh
Confidence 4678877777666652 1235589999999999999998742 2568999999999999999999988
Q ss_pred cCCCCc-EEEEEcccccccccC-CCCeeEEEEcCCCCCCCCcc-cchhhhhcccccccccCCCCcHHHHHHHHHHHhccc
Q 020573 243 YGLQDI-IEIRQGSWFGKLKDV-EGKLSGVVSNPPYIPSDDIS-GLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASML 319 (324)
Q Consensus 243 ~gl~~r-v~~~~gD~~~~l~~~-~~~fDlIVsNPPYi~~~~~~-~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~L 319 (324)
++.... ..+..+|.+...... .++||+||+||||....-.. ...... +|... .......+. .+++.+.+.|
T Consensus 100 ~~~~~~~~~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~--~Fi~~~l~~L 173 (311)
T PF02384_consen 100 HGIDNSNINIIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDE-RFKKY---FPPKSNAEY--AFIEHALSLL 173 (311)
T ss_dssp TTHHCBGCEEEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTC-CCTTC---SSSTTEHHH--HHHHHHHHTE
T ss_pred hccccccccccccccccccccccccccccccCCCCccccccccccccccc-ccccc---CCCccchhh--hhHHHHHhhc
Confidence 876543 468899987643332 36899999999999762111 111111 22111 222333443 3889999999
Q ss_pred CCCCC
Q 020573 320 KPDKW 324 (324)
Q Consensus 320 kpgG~ 324 (324)
|+||.
T Consensus 174 k~~G~ 178 (311)
T PF02384_consen 174 KPGGR 178 (311)
T ss_dssp EEEEE
T ss_pred ccccc
Confidence 99983
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.3e-12 Score=114.45 Aligned_cols=99 Identities=15% Similarity=0.115 Sum_probs=78.5
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNP 274 (324)
.+.+|||+|||+|.+++.+++. +.+|+|+|+|+.|++.++++++..++. +.+..+|..... ..++||+|+++.
T Consensus 30 ~~~~vLDiGcG~G~~a~~la~~---g~~V~~iD~s~~~l~~a~~~~~~~~~~--v~~~~~d~~~~~--~~~~fD~I~~~~ 102 (195)
T TIGR00477 30 APCKTLDLGCGQGRNSLYLSLA---GYDVRAWDHNPASIASVLDMKARENLP--LRTDAYDINAAA--LNEDYDFIFSTV 102 (195)
T ss_pred CCCcEEEeCCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHHhCCC--ceeEeccchhcc--ccCCCCEEEEec
Confidence 3569999999999999999985 479999999999999999999888874 778888875421 235899999987
Q ss_pred CCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 275 PYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
.+... . .+....+++.+.++|||||+
T Consensus 103 ~~~~~------~------------------~~~~~~~l~~~~~~LkpgG~ 128 (195)
T TIGR00477 103 VFMFL------Q------------------AGRVPEIIANMQAHTRPGGY 128 (195)
T ss_pred ccccC------C------------------HHHHHHHHHHHHHHhCCCcE
Confidence 76411 0 12334688999999999994
|
Part of a tellurite-reducing operon tehA and tehB |
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.2e-12 Score=116.03 Aligned_cols=107 Identities=21% Similarity=0.315 Sum_probs=84.4
Q ss_pred CCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccccc--CCCCeeEEEEc
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKD--VEGKLSGVVSN 273 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~--~~~~fDlIVsN 273 (324)
..++||+|||+|.+++.+++.. |+.+|+|+|+++++++.|++|+...++. +++++++|+.+.... ..+.+|.|++|
T Consensus 17 ~~~ilDiGcG~G~~~~~la~~~-p~~~v~gvD~~~~~l~~a~~~~~~~~l~-ni~~i~~d~~~~~~~~~~~~~~d~v~~~ 94 (194)
T TIGR00091 17 APLHLEIGCGKGRFLIDMAKQN-PDKNFLGIEIHTPIVLAANNKANKLGLK-NLHVLCGDANELLDKFFPDGSLSKVFLN 94 (194)
T ss_pred CceEEEeCCCccHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHHhCCC-CEEEEccCHHHHHHhhCCCCceeEEEEE
Confidence 4589999999999999999986 8899999999999999999999999886 599999999764321 13589999999
Q ss_pred CC--CCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 274 PP--YIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 274 PP--Yi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
+| |.. . +|..+.. ....+++.++++|||||.
T Consensus 95 ~pdpw~k----------~-~h~~~r~---------~~~~~l~~~~r~LkpgG~ 127 (194)
T TIGR00091 95 FPDPWPK----------K-RHNKRRI---------TQPHFLKEYANVLKKGGV 127 (194)
T ss_pred CCCcCCC----------C-Ccccccc---------CCHHHHHHHHHHhCCCCE
Confidence 75 321 1 2222211 124688999999999994
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.8e-12 Score=117.86 Aligned_cols=103 Identities=19% Similarity=0.129 Sum_probs=81.9
Q ss_pred CCCeEEEEcCCccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEc
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN 273 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~-~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsN 273 (324)
.+.+|||+|||+|..+..+++.+ .++++|+|+|+|+.|++.|++|+..++..++++++++|+.+. +. +.+|+|++|
T Consensus 56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~-~~--~~~D~vv~~ 132 (247)
T PRK15451 56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDI-AI--ENASMVVLN 132 (247)
T ss_pred CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhC-CC--CCCCEEehh
Confidence 45689999999999999998843 367899999999999999999999988877899999998763 22 469999997
Q ss_pred CCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 274 PPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
.... |-+ .+....+++++.+.|||||.
T Consensus 133 ~~l~--------------~l~----------~~~~~~~l~~i~~~LkpGG~ 159 (247)
T PRK15451 133 FTLQ--------------FLE----------PSERQALLDKIYQGLNPGGA 159 (247)
T ss_pred hHHH--------------hCC----------HHHHHHHHHHHHHhcCCCCE
Confidence 4321 111 01234688999999999994
|
|
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.9e-12 Score=113.60 Aligned_cols=98 Identities=22% Similarity=0.346 Sum_probs=76.0
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNP 274 (324)
++.+|||+|||+|.+++.+++.. ++.+|+++|+|+++++.|++|++++++. +++++.+|..+.+......+|.++.+.
T Consensus 40 ~~~~VLDiG~G~G~~~~~la~~~-~~~~V~~vD~s~~~~~~a~~n~~~~~~~-~v~~~~~d~~~~~~~~~~~~d~v~~~~ 117 (196)
T PRK07402 40 PDSVLWDIGAGTGTIPVEAGLLC-PKGRVIAIERDEEVVNLIRRNCDRFGVK-NVEVIEGSAPECLAQLAPAPDRVCIEG 117 (196)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCC-CeEEEECchHHHHhhCCCCCCEEEEEC
Confidence 46799999999999999999864 6789999999999999999999999885 599999998653332223455554420
Q ss_pred CCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 275 PYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
+ ..+..+++.+.++|+|||+
T Consensus 118 --------------------------~----~~~~~~l~~~~~~LkpgG~ 137 (196)
T PRK07402 118 --------------------------G----RPIKEILQAVWQYLKPGGR 137 (196)
T ss_pred --------------------------C----cCHHHHHHHHHHhcCCCeE
Confidence 0 1134678888999999984
|
|
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.3e-12 Score=113.57 Aligned_cols=100 Identities=18% Similarity=0.161 Sum_probs=79.9
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNP 274 (324)
++.+|||+|||+|..++.+++. +.+|+|+|+|+.|++.|++++...++.+ +++..+|+.+.. ..++||+|+++-
T Consensus 30 ~~~~vLDiGcG~G~~a~~La~~---g~~V~gvD~S~~~i~~a~~~~~~~~~~~-v~~~~~d~~~~~--~~~~fD~I~~~~ 103 (197)
T PRK11207 30 KPGKTLDLGCGNGRNSLYLAAN---GFDVTAWDKNPMSIANLERIKAAENLDN-LHTAVVDLNNLT--FDGEYDFILSTV 103 (197)
T ss_pred CCCcEEEECCCCCHHHHHHHHC---CCEEEEEeCCHHHHHHHHHHHHHcCCCc-ceEEecChhhCC--cCCCcCEEEEec
Confidence 4579999999999999999985 3699999999999999999999988854 999999987632 236799999974
Q ss_pred CCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 275 PYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
.+ .|-+ .+....+++.+.++|||||+
T Consensus 104 ~~--------------~~~~----------~~~~~~~l~~i~~~LkpgG~ 129 (197)
T PRK11207 104 VL--------------MFLE----------AKTIPGLIANMQRCTKPGGY 129 (197)
T ss_pred ch--------------hhCC----------HHHHHHHHHHHHHHcCCCcE
Confidence 32 1111 12345789999999999994
|
|
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.40 E-value=5e-12 Score=110.23 Aligned_cols=100 Identities=24% Similarity=0.344 Sum_probs=83.7
Q ss_pred CCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEE
Q 020573 192 DGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVV 271 (324)
Q Consensus 192 ~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIV 271 (324)
...++.+++|+|||||.+++.++.. +|.++|+|+|.++++++..++|+++.|++ +++++.||.-+.+.... ++|.|+
T Consensus 31 ~~~~g~~l~DIGaGtGsi~iE~a~~-~p~~~v~AIe~~~~a~~~~~~N~~~fg~~-n~~vv~g~Ap~~L~~~~-~~daiF 107 (187)
T COG2242 31 RPRPGDRLWDIGAGTGSITIEWALA-GPSGRVIAIERDEEALELIERNAARFGVD-NLEVVEGDAPEALPDLP-SPDAIF 107 (187)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHh-CCCceEEEEecCHHHHHHHHHHHHHhCCC-cEEEEeccchHhhcCCC-CCCEEE
Confidence 3446779999999999999999955 69999999999999999999999999965 59999999988777643 788888
Q ss_pred EcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 272 SNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 272 sNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
.+ |. .-+..+++.+..+|||||.
T Consensus 108 IG---------------------------Gg---~~i~~ile~~~~~l~~ggr 130 (187)
T COG2242 108 IG---------------------------GG---GNIEEILEAAWERLKPGGR 130 (187)
T ss_pred EC---------------------------CC---CCHHHHHHHHHHHcCcCCe
Confidence 73 22 2244688999999999984
|
|
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.9e-12 Score=116.65 Aligned_cols=98 Identities=21% Similarity=0.151 Sum_probs=81.5
Q ss_pred eEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcCCCC
Q 020573 198 FWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYI 277 (324)
Q Consensus 198 ~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNPPYi 277 (324)
+|||+|||+|..+..+++.+ ++.+|+|+|+|+++++.|++++...|+.+++++..+|+.+.. ..++||+|+++
T Consensus 2 ~vLDiGcG~G~~~~~la~~~-~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~--~~~~fD~I~~~---- 74 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERH-PHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDP--FPDTYDLVFGF---- 74 (224)
T ss_pred eEEEECCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCC--CCCCCCEeehH----
Confidence 79999999999999999986 678999999999999999999999999889999999986542 23689999983
Q ss_pred CCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 278 PSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 278 ~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
++..|-+ ....+++++.++|||||+
T Consensus 75 ----------~~l~~~~------------~~~~~l~~~~~~LkpgG~ 99 (224)
T smart00828 75 ----------EVIHHIK------------DKMDLFSNISRHLKDGGH 99 (224)
T ss_pred ----------HHHHhCC------------CHHHHHHHHHHHcCCCCE
Confidence 2323321 134789999999999995
|
|
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=99.39 E-value=4e-12 Score=118.95 Aligned_cols=108 Identities=23% Similarity=0.256 Sum_probs=80.9
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCC-CcEEEEEccccccccc--CCCCeeEEE
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQ-DIIEIRQGSWFGKLKD--VEGKLSGVV 271 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~-~rv~~~~gD~~~~l~~--~~~~fDlIV 271 (324)
.+++|||++|=||.+++.++.. ...+|++||.|..++++|++|++.||++ ++++++++|+++.+.. ..++||+||
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~g--GA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~II 200 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAG--GAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLII 200 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHT--TESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEE
T ss_pred CCCceEEecCCCCHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEE
Confidence 3679999999999999988774 4468999999999999999999999986 6799999999986542 146999999
Q ss_pred EcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 272 SNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 272 sNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
++||=-.... + +=...|..++..+.++|+|||+
T Consensus 201 lDPPsF~k~~----------~----------~~~~~y~~L~~~a~~ll~~gG~ 233 (286)
T PF10672_consen 201 LDPPSFAKSK----------F----------DLERDYKKLLRRAMKLLKPGGL 233 (286)
T ss_dssp E--SSEESST----------C----------EHHHHHHHHHHHHHHTEEEEEE
T ss_pred ECCCCCCCCH----------H----------HHHHHHHHHHHHHHHhcCCCCE
Confidence 9999332111 1 0024678899999999999984
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.6e-12 Score=123.97 Aligned_cols=100 Identities=22% Similarity=0.296 Sum_probs=80.5
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNP 274 (324)
.+.+|||+|||+|.++..+++. +.+|+|+|.++++++.|+++++..+...+++++++|+.+ +....++||+|++
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~---g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~-l~~~~~~FD~Vi~-- 204 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARM---GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEK-LADEGRKFDAVLS-- 204 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHH-hhhccCCCCEEEE--
Confidence 4568999999999999999873 579999999999999999998776665679999999865 3323468999999
Q ss_pred CCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 275 PYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
.+|..|-+. ...++++..++|||||.
T Consensus 205 ------------~~vLeHv~d------------~~~~L~~l~r~LkPGG~ 230 (322)
T PLN02396 205 ------------LEVIEHVAN------------PAEFCKSLSALTIPNGA 230 (322)
T ss_pred ------------hhHHHhcCC------------HHHHHHHHHHHcCCCcE
Confidence 355555332 34688899999999995
|
|
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.1e-12 Score=118.04 Aligned_cols=102 Identities=27% Similarity=0.353 Sum_probs=81.8
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNP 274 (324)
++.+|||+|||+|..++.+++..++..+|+|+|+++.+++.|++|....++. +++++.+|+.+ ++...+.||+|++|-
T Consensus 77 ~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~-~v~~~~~d~~~-l~~~~~~fD~Vi~~~ 154 (272)
T PRK11873 77 PGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYT-NVEFRLGEIEA-LPVADNSVDVIISNC 154 (272)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCC-CEEEEEcchhh-CCCCCCceeEEEEcC
Confidence 5679999999999999888887666779999999999999999999988875 69999999866 332246899999983
Q ss_pred CCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 275 PYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
-+ .|-|. ...+++++.++|||||+
T Consensus 155 v~--------------~~~~d------------~~~~l~~~~r~LkpGG~ 178 (272)
T PRK11873 155 VI--------------NLSPD------------KERVFKEAFRVLKPGGR 178 (272)
T ss_pred cc--------------cCCCC------------HHHHHHHHHHHcCCCcE
Confidence 32 12111 13678999999999995
|
|
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.4e-12 Score=128.06 Aligned_cols=124 Identities=23% Similarity=0.326 Sum_probs=102.6
Q ss_pred CCCceeEEec----ccccCeeeeeeCCccccc--chHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCC
Q 020573 146 RKPFQYLVGC----EHWRDLVLSVEEGVFIPR--PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGS 219 (324)
Q Consensus 146 ~~pl~yi~g~----~~f~~l~~~v~~~vliPr--p~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p 219 (324)
+.|++++-|. +.+.|+.|.++++.|++. ...|.+...+.++. +...++.++|++||||.|++++|+.+
T Consensus 332 ~~~~~l~~~~~~I~E~l~~ltF~iSp~AFFQ~Nt~~aevLys~i~e~~----~l~~~k~llDv~CGTG~iglala~~~-- 405 (534)
T KOG2187|consen 332 GKPLQLVGGDPYITESLLGLTFRISPGAFFQTNTSAAEVLYSTIGEWA----GLPADKTLLDVCCGTGTIGLALARGV-- 405 (534)
T ss_pred CCCeEEEccccEEEeecCCeEEEECCchhhccCcHHHHHHHHHHHHHh----CCCCCcEEEEEeecCCceehhhhccc--
Confidence 3678877664 577899999999999985 78899999999887 34456789999999999999999975
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCC----CCee-EEEEcCCCC
Q 020573 220 KGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVE----GKLS-GVVSNPPYI 277 (324)
Q Consensus 220 ~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~----~~fD-lIVsNPPYi 277 (324)
.+|+||++++++++.|++|++.||++| .+|++|-..+.+..+. +.=+ ++|.|||-.
T Consensus 406 -~~ViGvEi~~~aV~dA~~nA~~NgisN-a~Fi~gqaE~~~~sl~~~~~~~~~~v~iiDPpR~ 466 (534)
T KOG2187|consen 406 -KRVIGVEISPDAVEDAEKNAQINGISN-ATFIVGQAEDLFPSLLTPCCDSETLVAIIDPPRK 466 (534)
T ss_pred -cceeeeecChhhcchhhhcchhcCccc-eeeeecchhhccchhcccCCCCCceEEEECCCcc
Confidence 799999999999999999999999986 9999996555443321 2334 889999973
|
|
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.37 E-value=6.1e-12 Score=117.19 Aligned_cols=116 Identities=13% Similarity=0.202 Sum_probs=94.9
Q ss_pred cchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEE
Q 020573 173 RPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIR 252 (324)
Q Consensus 173 rp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~ 252 (324)
.+++..+...+.... +.++|||+|||+|+.++.+|+..+++++|+++|.++++.+.|++|+++.|+.++|+++
T Consensus 103 ~~~~g~lL~~L~~~~-------~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li 175 (278)
T PLN02476 103 SPDQAQLLAMLVQIL-------GAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVK 175 (278)
T ss_pred CHHHHHHHHHHHHhc-------CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEE
Confidence 456666666666544 4679999999999999999998766889999999999999999999999999999999
Q ss_pred EcccccccccC-----CCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 253 QGSWFGKLKDV-----EGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 253 ~gD~~~~l~~~-----~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
.||..+.++.+ .++||+|+.+.+- ..|..+++.+.++|+|||+
T Consensus 176 ~GdA~e~L~~l~~~~~~~~FD~VFIDa~K-----------------------------~~Y~~y~e~~l~lL~~GGv 223 (278)
T PLN02476 176 HGLAAESLKSMIQNGEGSSYDFAFVDADK-----------------------------RMYQDYFELLLQLVRVGGV 223 (278)
T ss_pred EcCHHHHHHHHHhcccCCCCCEEEECCCH-----------------------------HHHHHHHHHHHHhcCCCcE
Confidence 99998866432 3589999996431 2345677888899999995
|
|
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=3e-12 Score=118.03 Aligned_cols=94 Identities=28% Similarity=0.259 Sum_probs=74.7
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEc
Q 020573 194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN 273 (324)
Q Consensus 194 ~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsN 273 (324)
..+.+|||+|||+|.++..+++.+ ++.+|+|+|+|+.+++.|+++ +++++++|+.+.. ..++||+|++|
T Consensus 28 ~~~~~vLDlGcG~G~~~~~l~~~~-p~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~--~~~~fD~v~~~ 96 (255)
T PRK14103 28 ERARRVVDLGCGPGNLTRYLARRW-PGAVIEALDSSPEMVAAARER--------GVDARTGDVRDWK--PKPDTDVVVSN 96 (255)
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHhc--------CCcEEEcChhhCC--CCCCceEEEEe
Confidence 346799999999999999999986 778999999999999999763 3789999986542 24689999998
Q ss_pred CCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 274 PPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
..+. |-|. ...+++++.+.|||||+
T Consensus 97 ~~l~--------------~~~d------------~~~~l~~~~~~LkpgG~ 121 (255)
T PRK14103 97 AALQ--------------WVPE------------HADLLVRWVDELAPGSW 121 (255)
T ss_pred hhhh--------------hCCC------------HHHHHHHHHHhCCCCcE
Confidence 6542 2111 13578888999999994
|
|
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.36 E-value=3e-12 Score=126.31 Aligned_cols=111 Identities=20% Similarity=0.216 Sum_probs=95.1
Q ss_pred CeeeeeeCCccccc--chHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Q 020573 160 DLVLSVEEGVFIPR--PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAA 237 (324)
Q Consensus 160 ~l~~~v~~~vliPr--p~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar 237 (324)
+..+.+.++.|++- ..++.|++.+.+++ +..++.+++|+.||.|.|++.+|+.. .+|+|+|+++++++.|+
T Consensus 260 ~~~~~~~~~sF~Q~N~~~~ekl~~~a~~~~----~~~~~~~vlDlYCGvG~f~l~lA~~~---~~V~gvEi~~~aV~~A~ 332 (432)
T COG2265 260 GVSFQISPRSFFQVNPAVAEKLYETALEWL----ELAGGERVLDLYCGVGTFGLPLAKRV---KKVHGVEISPEAVEAAQ 332 (432)
T ss_pred ceEEEeCCCCceecCHHHHHHHHHHHHHHH----hhcCCCEEEEeccCCChhhhhhcccC---CEEEEEecCHHHHHHHH
Confidence 46788888888873 67899999999998 33346789999999999999999764 79999999999999999
Q ss_pred HHHHHcCCCCcEEEEEcccccccccCC--CCeeEEEEcCCCCC
Q 020573 238 FNAQRYGLQDIIEIRQGSWFGKLKDVE--GKLSGVVSNPPYIP 278 (324)
Q Consensus 238 ~N~~~~gl~~rv~~~~gD~~~~l~~~~--~~fDlIVsNPPYi~ 278 (324)
+|++.|++.| ++|..++..+...... ..+|.||.|||=-.
T Consensus 333 ~NA~~n~i~N-~~f~~~~ae~~~~~~~~~~~~d~VvvDPPR~G 374 (432)
T COG2265 333 ENAAANGIDN-VEFIAGDAEEFTPAWWEGYKPDVVVVDPPRAG 374 (432)
T ss_pred HHHHHcCCCc-EEEEeCCHHHHhhhccccCCCCEEEECCCCCC
Confidence 9999999987 9999999988655432 47899999999653
|
|
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.3e-12 Score=128.64 Aligned_cols=112 Identities=17% Similarity=0.161 Sum_probs=81.6
Q ss_pred CCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCC-------CcEEEEEeCCHHHHHHHHHH
Q 020573 167 EGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGS-------KGSIIAVDLNPLAAAVAAFN 239 (324)
Q Consensus 167 ~~vliPrp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p-------~~~V~gvDis~~al~~Ar~N 239 (324)
..+|.|...++.+++.+.... .........+|+|+|||+|++.++++..+.. ...++|+|+++.++..|+.|
T Consensus 4 GqfyTP~~ia~~mv~~~~~~~-~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~ 82 (524)
T TIGR02987 4 GTFFTPPDIAKAMVANLVNEI-GKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKL 82 (524)
T ss_pred cccCCcHHHHHHHHHHHhhhc-chhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHH
Confidence 456889999999998876543 1111113468999999999999999987621 25799999999999999999
Q ss_pred HHHcCCCCcEEEEEccccccc----ccCCCCeeEEEEcCCCCCCC
Q 020573 240 AQRYGLQDIIEIRQGSWFGKL----KDVEGKLSGVVSNPPYIPSD 280 (324)
Q Consensus 240 ~~~~gl~~rv~~~~gD~~~~l----~~~~~~fDlIVsNPPYi~~~ 280 (324)
+...+. ..+.+..+|..... ....++||+||+||||+...
T Consensus 83 l~~~~~-~~~~i~~~d~l~~~~~~~~~~~~~fD~IIgNPPy~~~k 126 (524)
T TIGR02987 83 LGEFAL-LEINVINFNSLSYVLLNIESYLDLFDIVITNPPYGRLK 126 (524)
T ss_pred HhhcCC-CCceeeecccccccccccccccCcccEEEeCCCccccC
Confidence 987762 22566666654321 11135899999999999754
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.2e-12 Score=124.52 Aligned_cols=109 Identities=23% Similarity=0.297 Sum_probs=78.4
Q ss_pred CeeeeeeCCcccc--cchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Q 020573 160 DLVLSVEEGVFIP--RPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAA 237 (324)
Q Consensus 160 ~l~~~v~~~vliP--rp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar 237 (324)
++.|.++++.|++ ...++.+++.+.+++ . .. +..+||+.||+|.+++.+|+.+ .+|+|||+++.|++.|+
T Consensus 164 ~~~~~~~~~sFfQvN~~~~~~l~~~~~~~l-~---~~-~~~vlDlycG~G~fsl~la~~~---~~V~gvE~~~~av~~A~ 235 (352)
T PF05958_consen 164 GLSFRISPGSFFQVNPEQNEKLYEQALEWL-D---LS-KGDVLDLYCGVGTFSLPLAKKA---KKVIGVEIVEEAVEDAR 235 (352)
T ss_dssp TEEEEEETTS---SBHHHHHHHHHHHHHHC-T---T--TTEEEEES-TTTCCHHHHHCCS---SEEEEEES-HHHHHHHH
T ss_pred ceEEEECCCcCccCcHHHHHHHHHHHHHHh-h---cC-CCcEEEEeecCCHHHHHHHhhC---CeEEEeeCCHHHHHHHH
Confidence 5678999999997 377899999999988 2 22 2379999999999999999975 69999999999999999
Q ss_pred HHHHHcCCCCcEEEEEcccccccc------------c---CCCCeeEEEEcCCCC
Q 020573 238 FNAQRYGLQDIIEIRQGSWFGKLK------------D---VEGKLSGVVSNPPYI 277 (324)
Q Consensus 238 ~N~~~~gl~~rv~~~~gD~~~~l~------------~---~~~~fDlIVsNPPYi 277 (324)
+|++.+++.+ ++|+.++..+... . ....+|+||.|||=-
T Consensus 236 ~Na~~N~i~n-~~f~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~vilDPPR~ 289 (352)
T PF05958_consen 236 ENAKLNGIDN-VEFIRGDAEDFAKALAKAREFNRLKGIDLKSFKFDAVILDPPRA 289 (352)
T ss_dssp HHHHHTT--S-EEEEE--SHHCCCHHCCS-GGTTGGGS-GGCTTESEEEE---TT
T ss_pred HHHHHcCCCc-ceEEEeeccchhHHHHhhHHHHhhhhhhhhhcCCCEEEEcCCCC
Confidence 9999999975 9999887643211 0 012689999999964
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.35 E-value=5e-12 Score=119.88 Aligned_cols=109 Identities=21% Similarity=0.290 Sum_probs=88.0
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEc-ccccccccCCCCeeEEEE
Q 020573 194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQG-SWFGKLKDVEGKLSGVVS 272 (324)
Q Consensus 194 ~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~g-D~~~~l~~~~~~fDlIVs 272 (324)
.++..|||..||||.+.+.+... +++++|+|++..|++-|+.|++.+++.+ ..++.+ |+.+ ++-.+.++|.|++
T Consensus 196 ~~G~~vlDPFcGTGgiLiEagl~---G~~viG~Did~~mv~gak~Nl~~y~i~~-~~~~~~~Da~~-lpl~~~~vdaIat 270 (347)
T COG1041 196 KRGELVLDPFCGTGGILIEAGLM---GARVIGSDIDERMVRGAKINLEYYGIED-YPVLKVLDATN-LPLRDNSVDAIAT 270 (347)
T ss_pred ccCCEeecCcCCccHHHHhhhhc---CceEeecchHHHHHhhhhhhhhhhCcCc-eeEEEeccccc-CCCCCCccceEEe
Confidence 45779999999999999998874 5899999999999999999999999876 766666 8766 3322235999999
Q ss_pred cCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 273 NPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 273 NPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
+|||..+....... =-++|..+++.+.++||+||+
T Consensus 271 DPPYGrst~~~~~~-----------------l~~Ly~~~le~~~evLk~gG~ 305 (347)
T COG1041 271 DPPYGRSTKIKGEG-----------------LDELYEEALESASEVLKPGGR 305 (347)
T ss_pred cCCCCccccccccc-----------------HHHHHHHHHHHHHHHhhcCcE
Confidence 99998765432111 136788999999999999995
|
|
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.6e-12 Score=98.84 Aligned_cols=92 Identities=23% Similarity=0.242 Sum_probs=71.4
Q ss_pred EEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcCCCCCC
Q 020573 200 VDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPS 279 (324)
Q Consensus 200 LDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNPPYi~~ 279 (324)
||+|||+|..+..+++. +..+|+++|+++++++.++++.... ++.+.++|..+. +..+++||+|+++
T Consensus 1 LdiG~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~~~~~~~~~----~~~~~~~d~~~l-~~~~~sfD~v~~~------ 67 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR--GGASVTGIDISEEMLEQARKRLKNE----GVSFRQGDAEDL-PFPDNSFDVVFSN------ 67 (95)
T ss_dssp EEET-TTSHHHHHHHHT--TTCEEEEEES-HHHHHHHHHHTTTS----TEEEEESBTTSS-SS-TT-EEEEEEE------
T ss_pred CEecCcCCHHHHHHHhc--cCCEEEEEeCCHHHHHHHHhccccc----CchheeehHHhC-ccccccccccccc------
Confidence 79999999999999997 5789999999999999999987643 366999998774 4446899999995
Q ss_pred CCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 280 DDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 280 ~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
.+..| ++....+++++.++|||||+
T Consensus 68 --------~~~~~------------~~~~~~~l~e~~rvLk~gG~ 92 (95)
T PF08241_consen 68 --------SVLHH------------LEDPEAALREIYRVLKPGGR 92 (95)
T ss_dssp --------SHGGG------------SSHHHHHHHHHHHHEEEEEE
T ss_pred --------cceee------------ccCHHHHHHHHHHHcCcCeE
Confidence 22233 13455889999999999995
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.35 E-value=2e-13 Score=107.43 Aligned_cols=97 Identities=20% Similarity=0.243 Sum_probs=62.5
Q ss_pred EEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccC-CCCeeEEEEcCCCCC
Q 020573 200 VDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDV-EGKLSGVVSNPPYIP 278 (324)
Q Consensus 200 LDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~-~~~fDlIVsNPPYi~ 278 (324)
||+|||+|.++..++..+ +..+++|+|+|+.|++.|+++....+..+ ......+..+..... .++||+|+++
T Consensus 1 LdiGcG~G~~~~~l~~~~-~~~~~~~~D~s~~~l~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~fD~V~~~----- 73 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-PDARYTGVDISPSMLERARERLAELGNDN-FERLRFDVLDLFDYDPPESFDLVVAS----- 73 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT----EEEEE--SSS---CCC----SEEEEE-----
T ss_pred CEeCccChHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCCcc-eeEEEeecCChhhcccccccceehhh-----
Confidence 799999999999999997 78999999999999999999998876543 444444433322211 2599999994
Q ss_pred CCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 279 SDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 279 ~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
.|..| ++..+.+++.+.++|||||+
T Consensus 74 ---------~vl~~------------l~~~~~~l~~~~~~L~pgG~ 98 (99)
T PF08242_consen 74 ---------NVLHH------------LEDIEAVLRNIYRLLKPGGI 98 (99)
T ss_dssp ----------TTS--------------S-HHHHHHHHTTT-TSS-E
T ss_pred ---------hhHhh------------hhhHHHHHHHHHHHcCCCCC
Confidence 34344 23455899999999999995
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.7e-12 Score=132.40 Aligned_cols=137 Identities=21% Similarity=0.132 Sum_probs=97.3
Q ss_pred ccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhC---------------------------------
Q 020573 172 PRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLG--------------------------------- 218 (324)
Q Consensus 172 Prp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~--------------------------------- 218 (324)
+-|..|.++..++... .- ...+..++|++||||.+.+..|....
T Consensus 170 ~Apl~etlAaa~l~~a-~w--~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~ 246 (702)
T PRK11783 170 EAPLKENLAAAILLRS-GW--PQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQE 246 (702)
T ss_pred CCCCcHHHHHHHHHHc-CC--CCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHH
Confidence 3467777887777543 11 12356899999999999999886310
Q ss_pred --------CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccC-CCCeeEEEEcCCCCCCCCc----ccc
Q 020573 219 --------SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDV-EGKLSGVVSNPPYIPSDDI----SGL 285 (324)
Q Consensus 219 --------p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~-~~~fDlIVsNPPYi~~~~~----~~l 285 (324)
...+++|+|+++.|++.|++|+..+|+.+++++.++|+.+..... .++||+||+||||...-.. ..+
T Consensus 247 ~~~~~~~~~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~l 326 (702)
T PRK11783 247 RARAGLAELPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIAL 326 (702)
T ss_pred HHhhcccccCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHH
Confidence 123799999999999999999999999988999999998743221 2479999999999754321 111
Q ss_pred hhh------hhcccccccccCCCCcHHHHHHH
Q 020573 286 QVE------VGKHEPRLALDGGVDGLDYLLHL 311 (324)
Q Consensus 286 ~~e------v~~~eP~~aL~gg~dGl~~~~~i 311 (324)
..+ .....+..++..+++++.....+
T Consensus 327 Y~~lg~~lk~~~~g~~~~llt~~~~l~~~~~l 358 (702)
T PRK11783 327 YSQLGRRLKQQFGGWNAALFSSSPELLSCLGL 358 (702)
T ss_pred HHHHHHHHHHhCCCCeEEEEeCCHHHHHHhCC
Confidence 111 11245667788888877766554
|
|
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=8.5e-12 Score=117.17 Aligned_cols=99 Identities=16% Similarity=0.136 Sum_probs=79.1
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNP 274 (324)
++++|||+|||+|..++.+++. +.+|+|+|+|+.|++.+++|++..++ ++++..+|+.+.. ..++||+|+++-
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~---g~~V~avD~s~~ai~~~~~~~~~~~l--~v~~~~~D~~~~~--~~~~fD~I~~~~ 192 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALL---GFDVTAVDINQQSLENLQEIAEKENL--NIRTGLYDINSAS--IQEEYDFILSTV 192 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEechhccc--ccCCccEEEEcc
Confidence 3569999999999999999985 47999999999999999999999888 4899888876532 246899999964
Q ss_pred CCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 275 PYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
-+ .|-+ -+....+++.+.++|+|||+
T Consensus 193 vl--------------~~l~----------~~~~~~~l~~~~~~LkpgG~ 218 (287)
T PRK12335 193 VL--------------MFLN----------RERIPAIIKNMQEHTNPGGY 218 (287)
T ss_pred hh--------------hhCC----------HHHHHHHHHHHHHhcCCCcE
Confidence 32 1110 12345789999999999995
|
|
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.34 E-value=9.4e-12 Score=119.25 Aligned_cols=121 Identities=21% Similarity=0.095 Sum_probs=89.0
Q ss_pred cccccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCc
Q 020573 169 VFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDI 248 (324)
Q Consensus 169 vliPrp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~r 248 (324)
++.|+..++.+.+.+++.. . ....+.+|||+|||+|.++..+++.+ +..+|+++|+|+++++.|+++... .+
T Consensus 90 ~~~~~~~~e~~r~~~l~~~-~--l~~~~~~VLDLGcGtG~~~l~La~~~-~~~~VtgVD~S~~mL~~A~~k~~~----~~ 161 (340)
T PLN02490 90 IINPGHWTEDMRDDALEPA-D--LSDRNLKVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEPL----KE 161 (340)
T ss_pred CeecCcchHHHHHHHHhhc-c--cCCCCCEEEEEecCCcHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhhhc----cC
Confidence 4456677777777666543 1 11245699999999999999999886 567999999999999999998652 34
Q ss_pred EEEEEcccccccccCCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 249 IEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 249 v~~~~gD~~~~l~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
++++.+|+.+ +....+.||+|++|..+. |-|. ...+++++.+.|||||.
T Consensus 162 i~~i~gD~e~-lp~~~~sFDvVIs~~~L~--------------~~~d------------~~~~L~e~~rvLkPGG~ 210 (340)
T PLN02490 162 CKIIEGDAED-LPFPTDYADRYVSAGSIE--------------YWPD------------PQRGIKEAYRVLKIGGK 210 (340)
T ss_pred CeEEeccHHh-CCCCCCceeEEEEcChhh--------------hCCC------------HHHHHHHHHHhcCCCcE
Confidence 8899999876 222246899999974432 1111 12578999999999994
|
|
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.6e-11 Score=112.07 Aligned_cols=103 Identities=19% Similarity=0.116 Sum_probs=80.7
Q ss_pred CCCeEEEEcCCccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEc
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN 273 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~-~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsN 273 (324)
++.+|||+|||+|.++..+++.+ .++++|+|+|+|+.|++.|+++++..+...+++++++|+.+.. . ..+|+|+++
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~-~--~~~d~v~~~ 129 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVE-I--KNASMVILN 129 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC-C--CCCCEEeee
Confidence 45689999999999999999874 2578999999999999999999988776667999999997632 2 368999985
Q ss_pred CCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 274 PPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
-.. .|-+ .+....+++++.+.|||||+
T Consensus 130 ~~l--------------~~~~----------~~~~~~~l~~i~~~LkpgG~ 156 (239)
T TIGR00740 130 FTL--------------QFLP----------PEDRIALLTKIYEGLNPNGV 156 (239)
T ss_pred cch--------------hhCC----------HHHHHHHHHHHHHhcCCCeE
Confidence 321 1111 11234688999999999994
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.34 E-value=6.9e-12 Score=121.17 Aligned_cols=107 Identities=17% Similarity=0.292 Sum_probs=87.2
Q ss_pred eeeeeeCCccccc--chHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 020573 161 LVLSVEEGVFIPR--PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF 238 (324)
Q Consensus 161 l~~~v~~~vliPr--p~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~ 238 (324)
+.+.++++.|.+- ..++.+++.+.+++ . . .+.++||+|||+|.+++.+++.. .+|+|+|++++|++.|++
T Consensus 166 ~~~~~~~~~F~Q~N~~~~~~l~~~v~~~~-~---~-~~~~vlDl~~G~G~~sl~la~~~---~~v~~vE~~~~av~~a~~ 237 (353)
T TIGR02143 166 FIYRQVENSFTQPNAAVNIKMLEWACEVT-Q---G-SKGDLLELYCGNGNFSLALAQNF---RRVLATEIAKPSVNAAQY 237 (353)
T ss_pred EEEEECCCCcccCCHHHHHHHHHHHHHHh-h---c-CCCcEEEEeccccHHHHHHHHhC---CEEEEEECCHHHHHHHHH
Confidence 6788888988853 45788888888876 2 1 12379999999999999999874 489999999999999999
Q ss_pred HHHHcCCCCcEEEEEcccccccccC---------C------CCeeEEEEcCCC
Q 020573 239 NAQRYGLQDIIEIRQGSWFGKLKDV---------E------GKLSGVVSNPPY 276 (324)
Q Consensus 239 N~~~~gl~~rv~~~~gD~~~~l~~~---------~------~~fDlIVsNPPY 276 (324)
|++.+++.+ ++++.+|+.+.+... . .+||+|+.|||.
T Consensus 238 n~~~~~~~~-v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~lDPPR 289 (353)
T TIGR02143 238 NIAANNIDN-VQIIRMSAEEFTQAMNGVREFRRLKGIDLKSYNCSTIFVDPPR 289 (353)
T ss_pred HHHHcCCCc-EEEEEcCHHHHHHHHhhccccccccccccccCCCCEEEECCCC
Confidence 999999865 999999997754321 1 148999999995
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=99.33 E-value=5e-12 Score=112.60 Aligned_cols=107 Identities=28% Similarity=0.347 Sum_probs=73.4
Q ss_pred Ceeeee--eCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Q 020573 160 DLVLSV--EEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAA 237 (324)
Q Consensus 160 ~l~~~v--~~~vliPrp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar 237 (324)
|..|.+ +.-+|.||-.+|.. .+.+.+ .++..|+|++||.|.+++.+|+. ++..+|+|+|++|.|++.++
T Consensus 72 G~~f~~D~~kvyfs~rl~~Er~--Ri~~~v------~~~e~VlD~faGIG~f~l~~ak~-~~~~~V~A~d~Np~a~~~L~ 142 (200)
T PF02475_consen 72 GIRFKVDLSKVYFSPRLSTERR--RIANLV------KPGEVVLDMFAGIGPFSLPIAKH-GKAKRVYAVDLNPDAVEYLK 142 (200)
T ss_dssp TEEEEEETTTS---GGGHHHHH--HHHTC--------TT-EEEETT-TTTTTHHHHHHH-T-SSEEEEEES-HHHHHHHH
T ss_pred CEEEEEccceEEEccccHHHHH--HHHhcC------CcceEEEEccCCccHHHHHHhhh-cCccEEEEecCCHHHHHHHH
Confidence 445554 44567788666652 222222 24679999999999999999995 35689999999999999999
Q ss_pred HHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcCCCC
Q 020573 238 FNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYI 277 (324)
Q Consensus 238 ~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNPPYi 277 (324)
+|++.|++.+++..+++|..+.+. .+.+|-|++|.|..
T Consensus 143 ~Ni~lNkv~~~i~~~~~D~~~~~~--~~~~drvim~lp~~ 180 (200)
T PF02475_consen 143 ENIRLNKVENRIEVINGDAREFLP--EGKFDRVIMNLPES 180 (200)
T ss_dssp HHHHHTT-TTTEEEEES-GGG-----TT-EEEEEE--TSS
T ss_pred HHHHHcCCCCeEEEEcCCHHHhcC--ccccCEEEECChHH
Confidence 999999999999999999988665 47999999998864
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=7.6e-12 Score=115.25 Aligned_cols=96 Identities=20% Similarity=0.161 Sum_probs=76.2
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEc
Q 020573 194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN 273 (324)
Q Consensus 194 ~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsN 273 (324)
.++.+|||+|||+|.++..+++.+ +..+|+|+|+|+.+++.|+++. .++.++.+|..+... .++||+|++|
T Consensus 30 ~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~i~~a~~~~------~~~~~~~~d~~~~~~--~~~fD~v~~~ 100 (258)
T PRK01683 30 ENPRYVVDLGCGPGNSTELLVERW-PAARITGIDSSPAMLAEARSRL------PDCQFVEADIASWQP--PQALDLIFAN 100 (258)
T ss_pred cCCCEEEEEcccCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhC------CCCeEEECchhccCC--CCCccEEEEc
Confidence 346799999999999999999986 7789999999999999999874 248899999876432 3589999998
Q ss_pred CCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 274 PPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
..+. |-+ ....+++++.+.|||||+
T Consensus 101 ~~l~--------------~~~------------d~~~~l~~~~~~LkpgG~ 125 (258)
T PRK01683 101 ASLQ--------------WLP------------DHLELFPRLVSLLAPGGV 125 (258)
T ss_pred cChh--------------hCC------------CHHHHHHHHHHhcCCCcE
Confidence 5542 111 123678888999999994
|
|
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.8e-12 Score=124.58 Aligned_cols=110 Identities=23% Similarity=0.236 Sum_probs=91.9
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCC-CcEEEEEcccccccccCC---CCeeEE
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQ-DIIEIRQGSWFGKLKDVE---GKLSGV 270 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~-~rv~~~~gD~~~~l~~~~---~~fDlI 270 (324)
.+++|||++|=||.+++.+|.. ...+|++||+|..++++|++|++.||+. +++.|+++|.|+.+.... .+||+|
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~g--GA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlI 294 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALG--GASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLI 294 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhc--CCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEE
Confidence 4789999999999999999985 4459999999999999999999999985 568999999999876542 389999
Q ss_pred EEcCC-CCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 271 VSNPP-YIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 271 VsNPP-Yi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
|.+|| |..+... + .++..+|..++..+.+.|+|||+
T Consensus 295 ilDPPsF~r~k~~----------~--------~~~~rdy~~l~~~~~~iL~pgG~ 331 (393)
T COG1092 295 ILDPPSFARSKKQ----------E--------FSAQRDYKDLNDLALRLLAPGGT 331 (393)
T ss_pred EECCcccccCccc----------c--------hhHHHHHHHHHHHHHHHcCCCCE
Confidence 99999 4433221 1 23467889999999999999995
|
|
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.33 E-value=8e-12 Score=111.84 Aligned_cols=110 Identities=22% Similarity=0.229 Sum_probs=79.5
Q ss_pred EEecccccCeeeeeeCCcccccchHHHHHHHHHHHhhhc-CCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCH
Q 020573 152 LVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRD-NDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNP 230 (324)
Q Consensus 152 i~g~~~f~~l~~~v~~~vliPrp~te~lve~l~~~l~~~-~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~ 230 (324)
+++.+.||+-+| ...+++|..++.++...++.+... ....++.+|||+|||+|.++..+++.+ ++.+|+|+|+|+
T Consensus 2 ~~~~~~fw~~~~---g~~~~~rn~~~~~~~~~~~~~~~~l~~~~~~~~VLDiGCG~G~~~~~L~~~~-~~~~v~giDiS~ 77 (204)
T TIGR03587 2 KTEQEQFWAGEF---GKEYIDRNSRQSLVAAKLAMFARALNRLPKIASILELGANIGMNLAALKRLL-PFKHIYGVEINE 77 (204)
T ss_pred cchHHHHhcCcc---cchhhhccccHHHHHHHHHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhC-CCCeEEEEECCH
Confidence 455666666555 233778876665555444433110 012245689999999999999999875 678999999999
Q ss_pred HHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEc
Q 020573 231 LAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN 273 (324)
Q Consensus 231 ~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsN 273 (324)
+|++.|+++.. ++.+.++|+.++.. .++||+|++|
T Consensus 78 ~~l~~A~~~~~------~~~~~~~d~~~~~~--~~sfD~V~~~ 112 (204)
T TIGR03587 78 YAVEKAKAYLP------NINIIQGSLFDPFK--DNFFDLVLTK 112 (204)
T ss_pred HHHHHHHhhCC------CCcEEEeeccCCCC--CCCEEEEEEC
Confidence 99999998742 37888999887433 4799999996
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.2e-11 Score=126.01 Aligned_cols=114 Identities=14% Similarity=0.090 Sum_probs=86.7
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc-cCCCCeeEEEEc
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK-DVEGKLSGVVSN 273 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~-~~~~~fDlIVsN 273 (324)
++.+|||+|||+|.++..+++.+ ++.+|+|+|+|+.|++.|++++...+. +++++++|..+... ...++||+|++|
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~-P~~kVtGIDIS~~MLe~Ararl~~~g~--~ie~I~gDa~dLp~~fedeSFDvVVsn 494 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEET-EDKRIYGIDISENVIDTLKKKKQNEGR--SWNVIKGDAINLSSSFEKESVDTIVYS 494 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCC--CeEEEEcchHhCccccCCCCEEEEEEc
Confidence 46799999999999999999986 789999999999999999999876653 58899999876311 124689999999
Q ss_pred CCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 274 PPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
+++..- ..|.| ..++..+.+....+++++.++|||||+
T Consensus 495 ~vLH~L----------~syIp---~~g~~f~~edl~kiLreI~RVLKPGGr 532 (677)
T PRK06922 495 SILHEL----------FSYIE---YEGKKFNHEVIKKGLQSAYEVLKPGGR 532 (677)
T ss_pred hHHHhh----------hhhcc---cccccccHHHHHHHHHHHHHHcCCCcE
Confidence 876410 01111 112223456778899999999999995
|
|
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.3e-11 Score=111.06 Aligned_cols=115 Identities=21% Similarity=0.302 Sum_probs=96.2
Q ss_pred chHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEE
Q 020573 174 PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQ 253 (324)
Q Consensus 174 p~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~ 253 (324)
|++-.+...+.... .+++||++||+.|+-++.+|..++.+++++.+|++++..+.|++|+++.|+.++|+++.
T Consensus 45 ~e~g~~L~~L~~~~-------~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~ 117 (219)
T COG4122 45 PETGALLRLLARLS-------GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLL 117 (219)
T ss_pred hhHHHHHHHHHHhc-------CCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEe
Confidence 67777777776644 46799999999999999999998558999999999999999999999999999999999
Q ss_pred -ccccccccc-CCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 254 -GSWFGKLKD-VEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 254 -gD~~~~l~~-~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
+|+.+.+.. ..++||+|+.+ +.+ ..|..+++.+.++|+|||+
T Consensus 118 ~gdal~~l~~~~~~~fDliFID------------------adK-----------~~yp~~le~~~~lLr~GGl 161 (219)
T COG4122 118 GGDALDVLSRLLDGSFDLVFID------------------ADK-----------ADYPEYLERALPLLRPGGL 161 (219)
T ss_pred cCcHHHHHHhccCCCccEEEEe------------------CCh-----------hhCHHHHHHHHHHhCCCcE
Confidence 599887764 46899999984 110 1345788889999999995
|
|
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=99.32 E-value=7.5e-12 Score=108.42 Aligned_cols=77 Identities=18% Similarity=0.214 Sum_probs=65.0
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNP 274 (324)
.+.+|||+|||+|.++..+++. ..+|+++|+++.+++.+++|+.. .++++++++|+.+.... ..+||.|++||
T Consensus 13 ~~~~vLEiG~G~G~lt~~l~~~---~~~v~~vE~~~~~~~~~~~~~~~---~~~v~ii~~D~~~~~~~-~~~~d~vi~n~ 85 (169)
T smart00650 13 PGDTVLEIGPGKGALTEELLER---AARVTAIEIDPRLAPRLREKFAA---ADNLTVIHGDALKFDLP-KLQPYKVVGNL 85 (169)
T ss_pred CcCEEEEECCCccHHHHHHHhc---CCeEEEEECCHHHHHHHHHHhcc---CCCEEEEECchhcCCcc-ccCCCEEEECC
Confidence 4568999999999999999986 37999999999999999999864 24699999999874322 24699999999
Q ss_pred CCCC
Q 020573 275 PYIP 278 (324)
Q Consensus 275 PYi~ 278 (324)
||..
T Consensus 86 Py~~ 89 (169)
T smart00650 86 PYNI 89 (169)
T ss_pred Cccc
Confidence 9974
|
|
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.2e-12 Score=110.07 Aligned_cols=78 Identities=32% Similarity=0.493 Sum_probs=61.2
Q ss_pred eEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCC-CC-eeEEEEcCC
Q 020573 198 FWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVE-GK-LSGVVSNPP 275 (324)
Q Consensus 198 ~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~-~~-fDlIVsNPP 275 (324)
.|+|++||.|.-++.+|+.+ .+|+|+|+++..++.|+.|++-+|+.++|+++++|+++.+.... .. +|+|+++||
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~---~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSPP 78 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTF---DRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSPP 78 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT----EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE---
T ss_pred EEEEeccCcCHHHHHHHHhC---CeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECCC
Confidence 69999999999999999986 68999999999999999999999999999999999998765432 12 899999999
Q ss_pred CCC
Q 020573 276 YIP 278 (324)
Q Consensus 276 Yi~ 278 (324)
|..
T Consensus 79 WGG 81 (163)
T PF09445_consen 79 WGG 81 (163)
T ss_dssp BSS
T ss_pred CCC
Confidence 975
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.4e-11 Score=108.97 Aligned_cols=77 Identities=17% Similarity=0.248 Sum_probs=65.8
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEc
Q 020573 194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN 273 (324)
Q Consensus 194 ~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsN 273 (324)
.++.+|||+|||+|.++..+++.. .+|+++|+++++++.|++|++++++.+ +++..+|..+.+.. .++||+|+++
T Consensus 77 ~~~~~VLeiG~GsG~~t~~la~~~---~~v~~vd~~~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~-~~~fD~I~~~ 151 (212)
T PRK00312 77 KPGDRVLEIGTGSGYQAAVLAHLV---RRVFSVERIKTLQWEAKRRLKQLGLHN-VSVRHGDGWKGWPA-YAPFDRILVT 151 (212)
T ss_pred CCCCEEEEECCCccHHHHHHHHHh---CEEEEEeCCHHHHHHHHHHHHHCCCCc-eEEEECCcccCCCc-CCCcCEEEEc
Confidence 356799999999999999888864 489999999999999999999998865 99999998775443 3689999997
Q ss_pred CC
Q 020573 274 PP 275 (324)
Q Consensus 274 PP 275 (324)
.+
T Consensus 152 ~~ 153 (212)
T PRK00312 152 AA 153 (212)
T ss_pred cC
Confidence 53
|
|
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=99.31 E-value=7.4e-12 Score=112.07 Aligned_cols=115 Identities=25% Similarity=0.406 Sum_probs=90.3
Q ss_pred chHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEE
Q 020573 174 PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQ 253 (324)
Q Consensus 174 p~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~ 253 (324)
+++..++..+.... +.++||++|||+|+-++.+|+.++++++|+.+|++++..+.|++|+++.|+.++|+++.
T Consensus 31 ~~~g~lL~~l~~~~-------~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~ 103 (205)
T PF01596_consen 31 PETGQLLQMLVRLT-------RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIE 103 (205)
T ss_dssp HHHHHHHHHHHHHH-------T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEE
T ss_pred HHHHHHHHHHHHhc-------CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEE
Confidence 45555666666554 35699999999999999999988678999999999999999999999999999999999
Q ss_pred cccccccccC-----CCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 254 GSWFGKLKDV-----EGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 254 gD~~~~l~~~-----~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
||+.+.++.+ .++||+|+.+= +- ..|..+++.+.++|++||+
T Consensus 104 gda~~~l~~l~~~~~~~~fD~VFiDa-------------~K----------------~~y~~y~~~~~~ll~~ggv 150 (205)
T PF01596_consen 104 GDALEVLPELANDGEEGQFDFVFIDA-------------DK----------------RNYLEYFEKALPLLRPGGV 150 (205)
T ss_dssp S-HHHHHHHHHHTTTTTSEEEEEEES-------------TG----------------GGHHHHHHHHHHHEEEEEE
T ss_pred eccHhhHHHHHhccCCCceeEEEEcc-------------cc----------------cchhhHHHHHhhhccCCeE
Confidence 9998765432 25899999941 00 1233566777789999985
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=7.1e-12 Score=116.35 Aligned_cols=107 Identities=16% Similarity=0.112 Sum_probs=83.9
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNP 274 (324)
.+.+|||+|||+|.++..+++.+ |+.+|+++|+++++++.|+++....+..++++++.+|..+.+....++||+|++|.
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~ 144 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYL-PDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG 144 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC
Confidence 35689999999999999999986 88999999999999999999987655556899999999876655456899999983
Q ss_pred CCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 275 PYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
|.... .+. . .....+++.+.++|+|||+
T Consensus 145 -~~~~~----~~~-------~----------l~t~efl~~~~~~L~pgGv 172 (262)
T PRK04457 145 -FDGEG----IID-------A----------LCTQPFFDDCRNALSSDGI 172 (262)
T ss_pred -CCCCC----Ccc-------c----------cCcHHHHHHHHHhcCCCcE
Confidence 32111 000 0 0124788999999999995
|
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.8e-11 Score=107.96 Aligned_cols=118 Identities=23% Similarity=0.263 Sum_probs=86.0
Q ss_pred chHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEE
Q 020573 174 PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQ 253 (324)
Q Consensus 174 p~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~ 253 (324)
|..+.+.+.+.+.+ ...++.+|||+|||+|.++..+++.+++.++|+|+|+++.+++.|+++.. ....++++..
T Consensus 2 ~~~~~~~~~~~~~~----~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~--~~~~~~~~~~ 75 (241)
T PRK08317 2 PDFRRYRARTFELL----AVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAA--GLGPNVEFVR 75 (241)
T ss_pred chHHHHHHHHHHHc----CCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhh--CCCCceEEEe
Confidence 34455566666655 33456799999999999999999987567899999999999999999833 2334699999
Q ss_pred cccccccccCCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 254 GSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 254 gD~~~~l~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
+|..+. +...++||+|+++--+ .|-+ ....+++++.+.|||||+
T Consensus 76 ~d~~~~-~~~~~~~D~v~~~~~~--------------~~~~------------~~~~~l~~~~~~L~~gG~ 119 (241)
T PRK08317 76 GDADGL-PFPDGSFDAVRSDRVL--------------QHLE------------DPARALAEIARVLRPGGR 119 (241)
T ss_pred cccccC-CCCCCCceEEEEechh--------------hccC------------CHHHHHHHHHHHhcCCcE
Confidence 998652 2224689999995221 2211 123678888999999994
|
|
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.28 E-value=4.1e-11 Score=108.96 Aligned_cols=100 Identities=23% Similarity=0.365 Sum_probs=87.8
Q ss_pred CCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEE
Q 020573 192 DGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVV 271 (324)
Q Consensus 192 ~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIV 271 (324)
...++.+|+|.|+|||+++..||..+++.++|+.+|+.++..+.|++|++..++.+++.+..+|..+.... ..||.|+
T Consensus 91 gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~--~~vDav~ 168 (256)
T COG2519 91 GISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDE--EDVDAVF 168 (256)
T ss_pred CCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccccc--cccCEEE
Confidence 44568899999999999999999988899999999999999999999999999999999999999887654 4899999
Q ss_pred EcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 272 SNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 272 sNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
.+-| +|. ..++++.+.|||||+
T Consensus 169 LDmp-----------------~PW--------------~~le~~~~~Lkpgg~ 190 (256)
T COG2519 169 LDLP-----------------DPW--------------NVLEHVSDALKPGGV 190 (256)
T ss_pred EcCC-----------------ChH--------------HHHHHHHHHhCCCcE
Confidence 9644 232 578889999999984
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=5.2e-11 Score=110.57 Aligned_cols=101 Identities=18% Similarity=0.158 Sum_probs=77.4
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEc
Q 020573 194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN 273 (324)
Q Consensus 194 ~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsN 273 (324)
.++.+|||+|||+|..+..+++.+ .++|+|+|+|+.+++.|+++... .+++.+..+|+.+. +...++||+|+++
T Consensus 51 ~~~~~VLDiGcG~G~~a~~la~~~--~~~v~giD~s~~~~~~a~~~~~~---~~~i~~~~~D~~~~-~~~~~~FD~V~s~ 124 (263)
T PTZ00098 51 NENSKVLDIGSGLGGGCKYINEKY--GAHVHGVDICEKMVNIAKLRNSD---KNKIEFEANDILKK-DFPENTFDMIYSR 124 (263)
T ss_pred CCCCEEEEEcCCCChhhHHHHhhc--CCEEEEEECCHHHHHHHHHHcCc---CCceEEEECCcccC-CCCCCCeEEEEEh
Confidence 356799999999999999998864 57999999999999999988654 34699999998752 2224689999995
Q ss_pred CCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 274 PPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
.- ..|-+ .+....+++++.++|||||+
T Consensus 125 ~~--------------l~h~~----------~~d~~~~l~~i~r~LkPGG~ 151 (263)
T PTZ00098 125 DA--------------ILHLS----------YADKKKLFEKCYKWLKPNGI 151 (263)
T ss_pred hh--------------HHhCC----------HHHHHHHHHHHHHHcCCCcE
Confidence 21 12211 12334788999999999995
|
|
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=5e-11 Score=113.83 Aligned_cols=101 Identities=16% Similarity=0.073 Sum_probs=75.1
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEc
Q 020573 194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN 273 (324)
Q Consensus 194 ~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsN 273 (324)
..+++|||+|||+|.++..++.. ++ ..|+|+|.|+.++..++...+..+...+++++.+|+.+. +. .++||+|+|+
T Consensus 121 l~g~~VLDIGCG~G~~~~~la~~-g~-~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~l-p~-~~~FD~V~s~ 196 (322)
T PRK15068 121 LKGRTVLDVGCGNGYHMWRMLGA-GA-KLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQL-PA-LKAFDTVFSM 196 (322)
T ss_pred CCCCEEEEeccCCcHHHHHHHHc-CC-CEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHC-CC-cCCcCEEEEC
Confidence 45679999999999999999987 33 479999999998876554444333345699999998763 33 5789999993
Q ss_pred CCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 274 PPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
.+..|.+ ....+++++.+.|+|||.
T Consensus 197 --------------~vl~H~~------------dp~~~L~~l~~~LkpGG~ 221 (322)
T PRK15068 197 --------------GVLYHRR------------SPLDHLKQLKDQLVPGGE 221 (322)
T ss_pred --------------ChhhccC------------CHHHHHHHHHHhcCCCcE
Confidence 2333422 234678999999999994
|
|
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=99.27 E-value=4.6e-11 Score=113.06 Aligned_cols=102 Identities=14% Similarity=0.128 Sum_probs=80.9
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEc
Q 020573 194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN 273 (324)
Q Consensus 194 ~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsN 273 (324)
.+..+|||+|||+|.+++.+++++ |+.+++++|. +.+++.|++|++..|+.++++++.+|+++... +.+|+|++.
T Consensus 148 ~~~~~vlDiG~G~G~~~~~~~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~---~~~D~v~~~ 222 (306)
T TIGR02716 148 DGVKKMIDVGGGIGDISAAMLKHF-PELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESY---PEADAVLFC 222 (306)
T ss_pred CCCCEEEEeCCchhHHHHHHHHHC-CCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCC---CCCCEEEeE
Confidence 345799999999999999999997 8899999998 79999999999999999999999999986321 247987752
Q ss_pred CCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 274 PPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
.+.++- +-+....+++++.+.|||||.
T Consensus 223 --------------~~lh~~----------~~~~~~~il~~~~~~L~pgG~ 249 (306)
T TIGR02716 223 --------------RILYSA----------NEQLSTIMCKKAFDAMRSGGR 249 (306)
T ss_pred --------------hhhhcC----------ChHHHHHHHHHHHHhcCCCCE
Confidence 111110 112345789999999999994
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=99.26 E-value=4.7e-11 Score=113.51 Aligned_cols=108 Identities=19% Similarity=0.104 Sum_probs=84.3
Q ss_pred cCeeeeeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 020573 159 RDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF 238 (324)
Q Consensus 159 ~~l~~~v~~~vliPrp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~ 238 (324)
++....+....+.+++.++.+++.+++++ ......++.+|||+|||+|.+++.+++. +.+|+|+|+|+.|++.|++
T Consensus 109 y~~~d~v~~~~l~~~~~~~~~v~~~l~~l-~~~~~~~~~~VLDlGcGtG~~a~~la~~---g~~V~gvD~S~~ml~~A~~ 184 (315)
T PLN02585 109 YGETDEVNKVQLDIRLGHAQTVEKVLLWL-AEDGSLAGVTVCDAGCGTGSLAIPLALE---GAIVSASDISAAMVAEAER 184 (315)
T ss_pred cCCccccCceeeecccChHHHHHHHHHHH-HhcCCCCCCEEEEecCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHH
Confidence 45556667777888888888888888887 3221234679999999999999999985 4699999999999999999
Q ss_pred HHHHcCC----CCcEEEEEcccccccccCCCCeeEEEEcC
Q 020573 239 NAQRYGL----QDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (324)
Q Consensus 239 N~~~~gl----~~rv~~~~gD~~~~l~~~~~~fDlIVsNP 274 (324)
|++..+. ..++.|..+|+.+. .++||+|+++-
T Consensus 185 ~~~~~~~~~~~~~~~~f~~~Dl~~l----~~~fD~Vv~~~ 220 (315)
T PLN02585 185 RAKEALAALPPEVLPKFEANDLESL----SGKYDTVTCLD 220 (315)
T ss_pred HHHhcccccccccceEEEEcchhhc----CCCcCEEEEcC
Confidence 9876532 13588999997542 36899999863
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.3e-11 Score=112.33 Aligned_cols=105 Identities=15% Similarity=0.201 Sum_probs=81.5
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcC--C--CCcEEEEEcccccccccCCCCeeEE
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYG--L--QDIIEIRQGSWFGKLKDVEGKLSGV 270 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~g--l--~~rv~~~~gD~~~~l~~~~~~fDlI 270 (324)
.+++||++|||+|.++..+++.. +..+|++||+++++++.|+++....+ . .++++++.+|..+.+....++||+|
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~-~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHP-SVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCC-CCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 46799999999999999998863 45799999999999999999986532 2 4579999999987665445789999
Q ss_pred EEcC--CCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 271 VSNP--PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 271 VsNP--PYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
++|. |+.+... + ..+.+++.+.+.|+|||+
T Consensus 155 i~D~~dp~~~~~~-----------------------l-~t~ef~~~~~~~L~~gGv 186 (283)
T PRK00811 155 IVDSTDPVGPAEG-----------------------L-FTKEFYENCKRALKEDGI 186 (283)
T ss_pred EECCCCCCCchhh-----------------------h-hHHHHHHHHHHhcCCCcE
Confidence 9983 4421110 0 124678888999999995
|
|
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.25 E-value=5.1e-11 Score=105.34 Aligned_cols=100 Identities=25% Similarity=0.240 Sum_probs=74.8
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEc
Q 020573 194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN 273 (324)
Q Consensus 194 ~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsN 273 (324)
.+++++||+|||.|..++.||+. +..|+|+|+|+.+++.+++.+++.+++ |+....|+.+... .+.||+|++-
T Consensus 29 ~~~g~~LDlgcG~GRNalyLA~~---G~~VtAvD~s~~al~~l~~~a~~~~l~--i~~~~~Dl~~~~~--~~~yD~I~st 101 (192)
T PF03848_consen 29 LKPGKALDLGCGEGRNALYLASQ---GFDVTAVDISPVALEKLQRLAEEEGLD--IRTRVADLNDFDF--PEEYDFIVST 101 (192)
T ss_dssp S-SSEEEEES-TTSHHHHHHHHT---T-EEEEEESSHHHHHHHHHHHHHTT-T--EEEEE-BGCCBS---TTTEEEEEEE
T ss_pred cCCCcEEEcCCCCcHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHhhcCce--eEEEEecchhccc--cCCcCEEEEE
Confidence 35779999999999999999996 589999999999999999999998886 9999999876432 4689999982
Q ss_pred CCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 274 PPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
.|..|-+. +....+++...+.++|||+
T Consensus 102 --------------~v~~fL~~----------~~~~~i~~~m~~~~~pGG~ 128 (192)
T PF03848_consen 102 --------------VVFMFLQR----------ELRPQIIENMKAATKPGGY 128 (192)
T ss_dssp --------------SSGGGS-G----------GGHHHHHHHHHHTEEEEEE
T ss_pred --------------EEeccCCH----------HHHHHHHHHHHhhcCCcEE
Confidence 11222221 1234688888999999995
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=4.6e-11 Score=112.65 Aligned_cols=92 Identities=18% Similarity=0.251 Sum_probs=74.0
Q ss_pred HHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccc
Q 020573 179 MVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFG 258 (324)
Q Consensus 179 lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~ 258 (324)
+++.+.+.. ...++.+|||+|||+|.++..+++.. .+|+|+|+|+.+++.+++++..++..++++++++|+.+
T Consensus 24 i~~~Iv~~~----~~~~~~~VLEIG~G~G~LT~~Ll~~~---~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~ 96 (294)
T PTZ00338 24 VLDKIVEKA----AIKPTDTVLEIGPGTGNLTEKLLQLA---KKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALK 96 (294)
T ss_pred HHHHHHHhc----CCCCcCEEEEecCchHHHHHHHHHhC---CcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhh
Confidence 344444443 23356799999999999999999863 68999999999999999999888766679999999977
Q ss_pred ccccCCCCeeEEEEcCCCCCCC
Q 020573 259 KLKDVEGKLSGVVSNPPYIPSD 280 (324)
Q Consensus 259 ~l~~~~~~fDlIVsNPPYi~~~ 280 (324)
.. ...||.||+|+||.-+.
T Consensus 97 ~~---~~~~d~VvaNlPY~Ist 115 (294)
T PTZ00338 97 TE---FPYFDVCVANVPYQISS 115 (294)
T ss_pred hc---ccccCEEEecCCcccCc
Confidence 32 24789999999997544
|
|
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=6.9e-11 Score=114.69 Aligned_cols=107 Identities=14% Similarity=0.111 Sum_probs=84.9
Q ss_pred CCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccccc-CCCCeeEEEEcC
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKD-VEGKLSGVVSNP 274 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~-~~~~fDlIVsNP 274 (324)
+..+||+|||+|.+++.+|+.. |+..++|+|+++.+++.|.+++..+++.+ +.++++|+...+.. ..+.+|.|++|.
T Consensus 123 ~p~vLEIGcGsG~~ll~lA~~~-P~~~~iGIEI~~~~i~~a~~ka~~~gL~N-V~~i~~DA~~ll~~~~~~s~D~I~lnF 200 (390)
T PRK14121 123 EKILIEIGFGSGRHLLYQAKNN-PNKLFIGIEIHTPSIEQVLKQIELLNLKN-LLIINYDARLLLELLPSNSVEKIFVHF 200 (390)
T ss_pred CCeEEEEcCcccHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCCc-EEEEECCHHHhhhhCCCCceeEEEEeC
Confidence 4589999999999999999996 88999999999999999999999999976 99999998543211 247899999997
Q ss_pred CCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 275 PYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
|.-=.. .+| ..+ ....+++.+.++|+|||.
T Consensus 201 PdPW~K---------krH---RRl--------v~~~fL~e~~RvLkpGG~ 230 (390)
T PRK14121 201 PVPWDK---------KPH---RRV--------ISEDFLNEALRVLKPGGT 230 (390)
T ss_pred CCCccc---------cch---hhc--------cHHHHHHHHHHHcCCCcE
Confidence 631000 122 111 135789999999999994
|
|
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.3e-11 Score=112.25 Aligned_cols=96 Identities=23% Similarity=0.299 Sum_probs=77.5
Q ss_pred CCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCC-----cEEEEEcccccccccCCCCeeEE
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQD-----IIEIRQGSWFGKLKDVEGKLSGV 270 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~-----rv~~~~gD~~~~l~~~~~~fDlI 270 (324)
+.+|||+|||.|.++..||+. +++|+|+|+++++++.|++.....-..+ ++++...|..+ ..++||.|
T Consensus 90 g~~ilDvGCGgGLLSepLArl---ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~----~~~~fDaV 162 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARL---GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEG----LTGKFDAV 162 (282)
T ss_pred CceEEEeccCccccchhhHhh---CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhh----ccccccee
Confidence 467999999999999999996 3899999999999999999955443333 36666666544 23579999
Q ss_pred EEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 271 VSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 271 VsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
|| .||..| .++...+++...++|||||.
T Consensus 163 vc--------------sevleH------------V~dp~~~l~~l~~~lkP~G~ 190 (282)
T KOG1270|consen 163 VC--------------SEVLEH------------VKDPQEFLNCLSALLKPNGR 190 (282)
T ss_pred ee--------------HHHHHH------------HhCHHHHHHHHHHHhCCCCc
Confidence 99 678777 55667899999999999984
|
|
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.3e-10 Score=104.59 Aligned_cols=89 Identities=24% Similarity=0.274 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcc
Q 020573 176 TELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGS 255 (324)
Q Consensus 176 te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD 255 (324)
.+.+.+.+++++ .. ...++.+|||+|||+|.++..+++. +.+|+|+|+|+++++.|++++...+..+++.+.++|
T Consensus 38 ~~~~~~~~~~~l-~~-~~~~~~~vLDiGcG~G~~~~~la~~---~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d 112 (219)
T TIGR02021 38 RAAMRRKLLDWL-PK-DPLKGKRVLDAGCGTGLLSIELAKR---GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVND 112 (219)
T ss_pred HHHHHHHHHHHH-hc-CCCCCCEEEEEeCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECC
Confidence 345566666666 21 1235679999999999999999875 369999999999999999999888776679999999
Q ss_pred cccccccCCCCeeEEEEc
Q 020573 256 WFGKLKDVEGKLSGVVSN 273 (324)
Q Consensus 256 ~~~~l~~~~~~fDlIVsN 273 (324)
+.+.. ++||+|+++
T Consensus 113 ~~~~~----~~fD~ii~~ 126 (219)
T TIGR02021 113 LLSLC----GEFDIVVCM 126 (219)
T ss_pred hhhCC----CCcCEEEEh
Confidence 87632 589999984
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.23 E-value=4.7e-11 Score=114.69 Aligned_cols=99 Identities=27% Similarity=0.307 Sum_probs=79.7
Q ss_pred cchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCC--------------------------------
Q 020573 173 RPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSK-------------------------------- 220 (324)
Q Consensus 173 rp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~-------------------------------- 220 (324)
-|..|.|...++... +-..+..++|+-||||.|+|..|... ++
T Consensus 173 ApLketLAaAil~la----gw~~~~pl~DPmCGSGTi~IEAAl~~-~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~ 247 (381)
T COG0116 173 APLKETLAAAILLLA----GWKPDEPLLDPMCGSGTILIEAALIA-ANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEER 247 (381)
T ss_pred CCchHHHHHHHHHHc----CCCCCCccccCCCCccHHHHHHHHhc-cccCCccccccchhhhhhccHHHHHHHHHHHHHH
Confidence 366677777666543 22234589999999999999999863 31
Q ss_pred c-------EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcCCCC
Q 020573 221 G-------SIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYI 277 (324)
Q Consensus 221 ~-------~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNPPYi 277 (324)
+ .++|+|+++.+++.|+.|+++.|+.+.|+|.++|+...-... +.+|+|||||||.
T Consensus 248 a~~~~~~~~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~-~~~gvvI~NPPYG 310 (381)
T COG0116 248 ARRGKELPIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPL-EEYGVVISNPPYG 310 (381)
T ss_pred HhhcCccceEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCC-CcCCEEEeCCCcc
Confidence 1 378999999999999999999999999999999997643332 6899999999997
|
|
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=7e-11 Score=115.21 Aligned_cols=77 Identities=22% Similarity=0.158 Sum_probs=66.7
Q ss_pred CCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcCC
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPP 275 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNPP 275 (324)
+.+|||++||+|.+++.++.+. +..+|+++|+++.+++.+++|++.|++.+ +++.++|+.+.+.. .++||+|+.|||
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~-~~~~V~a~Din~~Av~~a~~N~~~N~~~~-~~v~~~Da~~~l~~-~~~fD~V~lDP~ 134 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALET-GVEKVTLNDINPDAVELIKKNLELNGLEN-EKVFNKDANALLHE-ERKFDVVDIDPF 134 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCc-eEEEhhhHHHHHhh-cCCCCEEEECCC
Confidence 3589999999999999999985 44589999999999999999999999875 78999998765432 357999999986
|
|
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.22 E-value=6.6e-11 Score=102.33 Aligned_cols=94 Identities=26% Similarity=0.335 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHhhhcCCCC-CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEc
Q 020573 176 TELMVDLVSDVLVRDNDGL-RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQG 254 (324)
Q Consensus 176 te~lve~l~~~l~~~~~~~-~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~g 254 (324)
.+.+++++.+.+. ..... ...+|||||||.|.+...|+++ +-....+|||.|++|+++|+..+++.++++.|+|.+.
T Consensus 48 e~riv~wl~d~~~-~~rv~~~A~~VlDLGtGNG~~L~~L~~e-gf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~ 125 (227)
T KOG1271|consen 48 EERIVDWLKDLIV-ISRVSKQADRVLDLGTGNGHLLFQLAKE-GFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQL 125 (227)
T ss_pred HHHHHHHHHhhhh-hhhhcccccceeeccCCchHHHHHHHHh-cCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEe
Confidence 3556777766552 11111 2239999999999999999997 3456799999999999999999999999999999999
Q ss_pred ccccccccCCCCeeEEEE
Q 020573 255 SWFGKLKDVEGKLSGVVS 272 (324)
Q Consensus 255 D~~~~l~~~~~~fDlIVs 272 (324)
|.+++ ....++||+|.-
T Consensus 126 DI~~~-~~~~~qfdlvlD 142 (227)
T KOG1271|consen 126 DITDP-DFLSGQFDLVLD 142 (227)
T ss_pred eccCC-cccccceeEEee
Confidence 99986 334578998875
|
|
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.1e-10 Score=107.09 Aligned_cols=84 Identities=24% Similarity=0.372 Sum_probs=68.0
Q ss_pred CCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccc-ccc-cCCCCeeE
Q 020573 192 DGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFG-KLK-DVEGKLSG 269 (324)
Q Consensus 192 ~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~-~l~-~~~~~fDl 269 (324)
+..++.+|+|-|+|||+++.++++.++|.++|+..|+.++..+.|++|++.+|+.++|.+.+.|..+ .+. ..+..+|.
T Consensus 37 ~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~~~~~Da 116 (247)
T PF08704_consen 37 DIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEELESDFDA 116 (247)
T ss_dssp T--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT-TTSEEE
T ss_pred CCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccccccCcccE
Confidence 4457889999999999999999999999999999999999999999999999999899999999964 332 23468999
Q ss_pred EEEcCC
Q 020573 270 VVSNPP 275 (324)
Q Consensus 270 IVsNPP 275 (324)
|+.+-|
T Consensus 117 vfLDlp 122 (247)
T PF08704_consen 117 VFLDLP 122 (247)
T ss_dssp EEEESS
T ss_pred EEEeCC
Confidence 999754
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.8e-11 Score=109.54 Aligned_cols=94 Identities=17% Similarity=0.065 Sum_probs=71.6
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNP 274 (324)
...+|||+|||+|.++..+++. ..+|+|+|+|+.+++.|+++.. ...++++|+.+ ++...++||+|++|.
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~~~D~s~~~l~~a~~~~~------~~~~~~~d~~~-~~~~~~~fD~V~s~~ 111 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRER---GSQVTALDLSPPMLAQARQKDA------ADHYLAGDIES-LPLATATFDLAWSNL 111 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhCC------CCCEEEcCccc-CcCCCCcEEEEEECc
Confidence 3568999999999999988764 4799999999999999998742 25678888865 233346899999986
Q ss_pred CCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 275 PYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
++. |.+ ....++.++.++|||||+
T Consensus 112 ~l~--------------~~~------------d~~~~l~~~~~~Lk~gG~ 135 (251)
T PRK10258 112 AVQ--------------WCG------------NLSTALRELYRVVRPGGV 135 (251)
T ss_pred hhh--------------hcC------------CHHHHHHHHHHHcCCCeE
Confidence 542 111 123678888999999984
|
|
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.9e-10 Score=103.34 Aligned_cols=100 Identities=15% Similarity=0.095 Sum_probs=76.2
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccc--ccCCCCeeEE
Q 020573 193 GLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKL--KDVEGKLSGV 270 (324)
Q Consensus 193 ~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l--~~~~~~fDlI 270 (324)
..++.+|||+|||+|.++..+++.. +.++|+|+|+++.|++.+.++++.. .++.++.+|..++. ....++||+|
T Consensus 70 i~~g~~VlD~G~G~G~~~~~la~~v-~~g~V~avD~~~~ml~~l~~~a~~~---~nv~~i~~D~~~~~~~~~l~~~~D~i 145 (226)
T PRK04266 70 IKKGSKVLYLGAASGTTVSHVSDIV-EEGVVYAVEFAPRPMRELLEVAEER---KNIIPILADARKPERYAHVVEKVDVI 145 (226)
T ss_pred CCCCCEEEEEccCCCHHHHHHHHhc-CCCeEEEEECCHHHHHHHHHHhhhc---CCcEEEECCCCCcchhhhccccCCEE
Confidence 3456799999999999999999987 4679999999999999888887754 35899999986531 1223579999
Q ss_pred EEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 271 VSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 271 VsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
+++-+. |. ....+++++.++|||||.
T Consensus 146 ~~d~~~-----------------p~-----------~~~~~L~~~~r~LKpGG~ 171 (226)
T PRK04266 146 YQDVAQ-----------------PN-----------QAEIAIDNAEFFLKDGGY 171 (226)
T ss_pred EECCCC-----------------hh-----------HHHHHHHHHHHhcCCCcE
Confidence 985220 10 112467899999999994
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.5e-10 Score=103.88 Aligned_cols=110 Identities=25% Similarity=0.348 Sum_probs=83.3
Q ss_pred ccccCeeeeeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHH
Q 020573 156 EHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAV 235 (324)
Q Consensus 156 ~~f~~l~~~v~~~vliPrp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~ 235 (324)
..|.+..+.+..+..+..| .++..+++.+ ...++.+|||+|||||+.+..+++..++...|+++|+++..++.
T Consensus 40 ~aY~d~~l~i~~~~~is~P---~~~a~~l~~L----~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~ 112 (209)
T PF01135_consen 40 LAYEDRPLPIGCGQTISAP---SMVARMLEAL----DLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAER 112 (209)
T ss_dssp GTTSSS-EEEETTEEE--H---HHHHHHHHHT----TC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHH
T ss_pred CCCCCCCeeecceeechHH---HHHHHHHHHH----hcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHH
Confidence 3445677777777777655 3455555555 34467899999999999999999998777899999999999999
Q ss_pred HHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcC
Q 020573 236 AAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (324)
Q Consensus 236 Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNP 274 (324)
|++|++.++.. ++.++.+|.....+. .+.||.|+++.
T Consensus 113 A~~~l~~~~~~-nv~~~~gdg~~g~~~-~apfD~I~v~~ 149 (209)
T PF01135_consen 113 ARRNLARLGID-NVEVVVGDGSEGWPE-EAPFDRIIVTA 149 (209)
T ss_dssp HHHHHHHHTTH-SEEEEES-GGGTTGG-G-SEEEEEESS
T ss_pred HHHHHHHhccC-ceeEEEcchhhcccc-CCCcCEEEEee
Confidence 99999999987 499999998877654 46899999963
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.4e-10 Score=108.83 Aligned_cols=104 Identities=13% Similarity=0.080 Sum_probs=79.4
Q ss_pred CCCeEEEEcCCccHH-HHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHH-cCCCCcEEEEEcccccccccCCCCeeEEEE
Q 020573 195 RDGFWVDLGTGSGAI-AIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR-YGLQDIIEIRQGSWFGKLKDVEGKLSGVVS 272 (324)
Q Consensus 195 ~~~~VLDLGcGsG~i-ai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~-~gl~~rv~~~~gD~~~~l~~~~~~fDlIVs 272 (324)
.+++|+|+|||.|-+ ++.++....++++++|+|+|+++++.|+++++. .++.++++|..+|..+.... .++||+|++
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~-l~~FDlVF~ 201 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTES-LKEYDVVFL 201 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccc-cCCcCEEEE
Confidence 567999999997743 555554445889999999999999999999965 78988999999999875332 368999999
Q ss_pred cCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 273 NPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 273 NPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
+ --+. +.+ ....+++++..++|+|||+
T Consensus 202 ~-ALi~------~dk------------------~~k~~vL~~l~~~LkPGG~ 228 (296)
T PLN03075 202 A-ALVG------MDK------------------EEKVKVIEHLGKHMAPGAL 228 (296)
T ss_pred e-cccc------ccc------------------ccHHHHHHHHHHhcCCCcE
Confidence 5 2110 000 1234788999999999995
|
|
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.4e-10 Score=105.17 Aligned_cols=104 Identities=19% Similarity=0.240 Sum_probs=82.9
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHhCCC------cEEEEEeCCHHHHHHHHHHHHHcCCCCc--EEEEEcccccccccCC
Q 020573 193 GLRDGFWVDLGTGSGAIAIGIARVLGSK------GSIIAVDLNPLAAAVAAFNAQRYGLQDI--IEIRQGSWFGKLKDVE 264 (324)
Q Consensus 193 ~~~~~~VLDLGcGsG~iai~la~~~~p~------~~V~gvDis~~al~~Ar~N~~~~gl~~r--v~~~~gD~~~~l~~~~ 264 (324)
...+.++||++||||-++..+.+.. +. .+|+.+|+|++|++++++.+++.++..+ +.++.+|..+ ++...
T Consensus 98 p~~~m~~lDvaGGTGDiaFril~~v-~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~-LpFdd 175 (296)
T KOG1540|consen 98 PGKGMKVLDVAGGTGDIAFRILRHV-KSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAED-LPFDD 175 (296)
T ss_pred CCCCCeEEEecCCcchhHHHHHHhh-ccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCccc-CCCCC
Confidence 3456799999999999999999987 44 7999999999999999999988877665 9999999877 44446
Q ss_pred CCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 265 GKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 265 ~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
..||..++- | .+ ++- -++.+.+++|+|+|||||.
T Consensus 176 ~s~D~yTia--f-----------GI-RN~------------th~~k~l~EAYRVLKpGGr 209 (296)
T KOG1540|consen 176 DSFDAYTIA--F-----------GI-RNV------------THIQKALREAYRVLKPGGR 209 (296)
T ss_pred CcceeEEEe--c-----------ce-ecC------------CCHHHHHHHHHHhcCCCcE
Confidence 789987761 1 11 221 2245789999999999994
|
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.7e-10 Score=109.94 Aligned_cols=78 Identities=19% Similarity=0.299 Sum_probs=66.5
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEc
Q 020573 194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN 273 (324)
Q Consensus 194 ~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsN 273 (324)
.++.+|||+|||+|.++..+++..+..++|+++|+++++++.|++|++.+|+. ++.++++|..+.... .+.||+|+++
T Consensus 79 ~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~-nV~~i~gD~~~~~~~-~~~fD~Ii~~ 156 (322)
T PRK13943 79 DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIE-NVIFVCGDGYYGVPE-FAPYDVIFVT 156 (322)
T ss_pred CCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEeCChhhcccc-cCCccEEEEC
Confidence 34679999999999999999998644468999999999999999999999985 599999998765443 2579999984
|
|
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=7e-11 Score=106.13 Aligned_cols=102 Identities=22% Similarity=0.293 Sum_probs=72.5
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccc-------ccCCCCe
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKL-------KDVEGKL 267 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l-------~~~~~~f 267 (324)
++.+|||+|||+|.++..+++..++.++|+|+|+++ + +... +++++++|+.+.. ....++|
T Consensus 51 ~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~----------~~~~-~v~~i~~D~~~~~~~~~i~~~~~~~~~ 118 (209)
T PRK11188 51 PGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M----------DPIV-GVDFLQGDFRDELVLKALLERVGDSKV 118 (209)
T ss_pred CCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c----------cCCC-CcEEEecCCCChHHHHHHHHHhCCCCC
Confidence 466899999999999999999876668999999998 1 1233 4999999998741 0124689
Q ss_pred eEEEEcC-CCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 268 SGVVSNP-PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 268 DlIVsNP-PYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
|+|+||+ |+...... .+...+ +.....+++.+.++|||||+
T Consensus 119 D~V~S~~~~~~~g~~~----~d~~~~------------~~~~~~~L~~~~~~LkpGG~ 160 (209)
T PRK11188 119 QVVMSDMAPNMSGTPA----VDIPRA------------MYLVELALDMCRDVLAPGGS 160 (209)
T ss_pred CEEecCCCCccCCChH----HHHHHH------------HHHHHHHHHHHHHHcCCCCE
Confidence 9999997 55422110 000000 22345789999999999995
|
|
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.3e-10 Score=104.66 Aligned_cols=97 Identities=20% Similarity=0.198 Sum_probs=75.6
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNP 274 (324)
.+.+|||+|||+|.++..+++.. +..+|+++|+++.+++.++++.. .++.++.+|+.+.. ...++||+|+++-
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~-----~~~~~~~~d~~~~~-~~~~~fD~vi~~~ 106 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRF-PQAEFIALDISAGMLAQAKTKLS-----ENVQFICGDAEKLP-LEDSSFDLIVSNL 106 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhC-CCCcEEEEeChHHHHHHHHHhcC-----CCCeEEecchhhCC-CCCCceeEEEEhh
Confidence 34689999999999999999985 77889999999999999987654 35889999987642 2346899999962
Q ss_pred CCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 275 PYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
.. .|. .....+++.+.+.|||||+
T Consensus 107 ~l--------------~~~------------~~~~~~l~~~~~~L~~~G~ 130 (240)
T TIGR02072 107 AL--------------QWC------------DDLSQALSELARVLKPGGL 130 (240)
T ss_pred hh--------------hhc------------cCHHHHHHHHHHHcCCCcE
Confidence 21 221 1234688899999999995
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.20 E-value=2e-10 Score=103.64 Aligned_cols=103 Identities=20% Similarity=0.255 Sum_probs=80.7
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNP 274 (324)
++.+|||+|||+|.++..++...+++.+|+++|+++.+++.+++++..+++.+++.++.+|+.+.. ...+.||+|+++
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~I~~~- 128 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALP-FPDNSFDAVTIA- 128 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCC-CCCCCccEEEEe-
Confidence 457999999999999999999863368999999999999999999987777677999999987643 224689999984
Q ss_pred CCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 275 PYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
+. ..+- .....+++.+.+.|+|||+
T Consensus 129 -~~------------l~~~------------~~~~~~l~~~~~~L~~gG~ 153 (239)
T PRK00216 129 -FG------------LRNV------------PDIDKALREMYRVLKPGGR 153 (239)
T ss_pred -cc------------cccC------------CCHHHHHHHHHHhccCCcE
Confidence 11 0111 1134678888999999994
|
|
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.8e-10 Score=114.88 Aligned_cols=121 Identities=14% Similarity=0.170 Sum_probs=94.0
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNP 274 (324)
++.+|||+|+|.|.-+..+|..++..+.|+++|+++.-+...++|+++.|+.+ +.+...|.........+.||.|+.++
T Consensus 113 pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~n-v~v~~~D~~~~~~~~~~~fD~ILvDa 191 (470)
T PRK11933 113 APQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSN-VALTHFDGRVFGAALPETFDAILLDA 191 (470)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEeCchhhhhhhchhhcCeEEEcC
Confidence 56799999999999999999988667899999999999999999999999975 89998887653223346799999999
Q ss_pred CCCCCCCcccchhhhhcccccccccCCCCcH----HHHHHHHHHHhcccCCCCC
Q 020573 275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGL----DYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 275 PYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl----~~~~~il~~a~~~LkpgG~ 324 (324)
|+...+.+.. .|.....-..+.+ ..-++|+..|.++|||||+
T Consensus 192 PCSG~G~~rk--------~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~ 237 (470)
T PRK11933 192 PCSGEGTVRK--------DPDALKNWSPESNLEIAATQRELIESAFHALKPGGT 237 (470)
T ss_pred CCCCCccccc--------CHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcE
Confidence 9987765533 2322211111112 2237899999999999995
|
|
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.4e-10 Score=106.67 Aligned_cols=116 Identities=16% Similarity=0.261 Sum_probs=92.9
Q ss_pred cchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEE
Q 020573 173 RPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIR 252 (324)
Q Consensus 173 rp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~ 252 (324)
.+++..+...+.... ..++||++||++|+-++.+|..++++++|+++|.+++..+.|++|+++.|+.++|+++
T Consensus 64 ~~~~g~lL~~l~~~~-------~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~ 136 (247)
T PLN02589 64 SADEGQFLNMLLKLI-------NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFR 136 (247)
T ss_pred CHHHHHHHHHHHHHh-------CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEE
Confidence 355556666666544 3569999999999999999998877899999999999999999999999999999999
Q ss_pred EcccccccccC------CCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 253 QGSWFGKLKDV------EGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 253 ~gD~~~~l~~~------~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
.||+.+.++.+ .++||+|+.+ .+ =+.|..+++.+.++|++||+
T Consensus 137 ~G~a~e~L~~l~~~~~~~~~fD~iFiD-------------ad----------------K~~Y~~y~~~~l~ll~~GGv 185 (247)
T PLN02589 137 EGPALPVLDQMIEDGKYHGTFDFIFVD-------------AD----------------KDNYINYHKRLIDLVKVGGV 185 (247)
T ss_pred eccHHHHHHHHHhccccCCcccEEEec-------------CC----------------HHHhHHHHHHHHHhcCCCeE
Confidence 99998866542 2689999984 00 01234566777889999985
|
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=2e-10 Score=112.20 Aligned_cols=98 Identities=23% Similarity=0.254 Sum_probs=77.4
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEE
Q 020573 193 GLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVS 272 (324)
Q Consensus 193 ~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVs 272 (324)
..++.+|||+|||+|.+++.+++.. +++|+|+|+|+++++.|+++++ ++ .+++..+|+.+. .++||.|++
T Consensus 165 l~~g~rVLDIGcG~G~~a~~la~~~--g~~V~giDlS~~~l~~A~~~~~--~l--~v~~~~~D~~~l----~~~fD~Ivs 234 (383)
T PRK11705 165 LKPGMRVLDIGCGWGGLARYAAEHY--GVSVVGVTISAEQQKLAQERCA--GL--PVEIRLQDYRDL----NGQFDRIVS 234 (383)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHhc--cC--eEEEEECchhhc----CCCCCEEEE
Confidence 3456799999999999999999874 5799999999999999999985 33 388888987652 368999999
Q ss_pred cCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 273 NPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 273 NPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
+.-+ .|- |...+..+++++.++|||||+
T Consensus 235 ~~~~--------------ehv----------g~~~~~~~l~~i~r~LkpGG~ 262 (383)
T PRK11705 235 VGMF--------------EHV----------GPKNYRTYFEVVRRCLKPDGL 262 (383)
T ss_pred eCch--------------hhC----------ChHHHHHHHHHHHHHcCCCcE
Confidence 6332 111 233456789999999999994
|
|
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.2e-10 Score=107.78 Aligned_cols=76 Identities=25% Similarity=0.326 Sum_probs=64.6
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNP 274 (324)
++.+|||+|||+|.++..+++.. .+|+|+|+++.+++.+++++.. .++++++++|+.+. .. ..||.||+||
T Consensus 29 ~~~~VLEIG~G~G~lt~~L~~~~---~~v~~vEid~~~~~~l~~~~~~---~~~v~ii~~D~~~~-~~--~~~d~Vv~Nl 99 (258)
T PRK14896 29 DGDPVLEIGPGKGALTDELAKRA---KKVYAIELDPRLAEFLRDDEIA---AGNVEIIEGDALKV-DL--PEFNKVVSNL 99 (258)
T ss_pred CcCeEEEEeCccCHHHHHHHHhC---CEEEEEECCHHHHHHHHHHhcc---CCCEEEEEeccccC-Cc--hhceEEEEcC
Confidence 46799999999999999999973 6899999999999999998854 24699999999873 21 3689999999
Q ss_pred CCCCC
Q 020573 275 PYIPS 279 (324)
Q Consensus 275 PYi~~ 279 (324)
||..+
T Consensus 100 Py~i~ 104 (258)
T PRK14896 100 PYQIS 104 (258)
T ss_pred CcccC
Confidence 99754
|
|
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.19 E-value=7.8e-11 Score=109.92 Aligned_cols=78 Identities=22% Similarity=0.224 Sum_probs=63.2
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNP 274 (324)
.+.+|||+|||+|.++..+++.. .+|+|+|+|+++++.+++|+.. ++++++++|+.+.... .-.+|.||+||
T Consensus 42 ~~~~VLEiG~G~G~lt~~L~~~~---~~v~avE~d~~~~~~~~~~~~~----~~v~~i~~D~~~~~~~-~~~~~~vv~Nl 113 (272)
T PRK00274 42 PGDNVLEIGPGLGALTEPLLERA---AKVTAVEIDRDLAPILAETFAE----DNLTIIEGDALKVDLS-ELQPLKVVANL 113 (272)
T ss_pred CcCeEEEeCCCccHHHHHHHHhC---CcEEEEECCHHHHHHHHHhhcc----CceEEEEChhhcCCHH-HcCcceEEEeC
Confidence 46689999999999999999984 3899999999999999988742 4699999999874211 11159999999
Q ss_pred CCCCCC
Q 020573 275 PYIPSD 280 (324)
Q Consensus 275 PYi~~~ 280 (324)
||..+.
T Consensus 114 PY~iss 119 (272)
T PRK00274 114 PYNITT 119 (272)
T ss_pred CccchH
Confidence 997653
|
|
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.19 E-value=5.2e-11 Score=99.37 Aligned_cols=84 Identities=24% Similarity=0.399 Sum_probs=71.1
Q ss_pred CCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEE
Q 020573 192 DGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVV 271 (324)
Q Consensus 192 ~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIV 271 (324)
+...+++++|||||.|.+.++.+.. .+..|+|+|++++|++++++|++...++ +.+++.|..+.... .+.||..|
T Consensus 45 gdiEgkkl~DLgcgcGmLs~a~sm~--~~e~vlGfDIdpeALEIf~rNaeEfEvq--idlLqcdildle~~-~g~fDtav 119 (185)
T KOG3420|consen 45 GDIEGKKLKDLGCGCGMLSIAFSMP--KNESVLGFDIDPEALEIFTRNAEEFEVQ--IDLLQCDILDLELK-GGIFDTAV 119 (185)
T ss_pred ccccCcchhhhcCchhhhHHHhhcC--CCceEEeeecCHHHHHHHhhchHHhhhh--hheeeeeccchhcc-CCeEeeEE
Confidence 4556889999999999999777663 5678999999999999999999988775 79999999875443 47999999
Q ss_pred EcCCCCCCC
Q 020573 272 SNPPYIPSD 280 (324)
Q Consensus 272 sNPPYi~~~ 280 (324)
.||||....
T Consensus 120 iNppFGTk~ 128 (185)
T KOG3420|consen 120 INPPFGTKK 128 (185)
T ss_pred ecCCCCccc
Confidence 999997543
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.1e-10 Score=107.84 Aligned_cols=103 Identities=16% Similarity=0.027 Sum_probs=74.8
Q ss_pred CCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEE
Q 020573 192 DGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVV 271 (324)
Q Consensus 192 ~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIV 271 (324)
...++++|||+|||+|.++..++.. ++ ..|+|+|.|+.++..++...+..+...++.+..+++.+. +. ...||+|+
T Consensus 118 ~~~~g~~VLDvGCG~G~~~~~~~~~-g~-~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~l-p~-~~~FD~V~ 193 (314)
T TIGR00452 118 SPLKGRTILDVGCGSGYHMWRMLGH-GA-KSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQL-HE-LYAFDTVF 193 (314)
T ss_pred CCCCCCEEEEeccCCcHHHHHHHHc-CC-CEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHC-CC-CCCcCEEE
Confidence 3456789999999999999998876 23 489999999999887654433333345688888887653 32 24899999
Q ss_pred EcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 272 SNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 272 sNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
++ .+..|-+. ...+++++++.|||||.
T Consensus 194 s~--------------gvL~H~~d------------p~~~L~el~r~LkpGG~ 220 (314)
T TIGR00452 194 SM--------------GVLYHRKS------------PLEHLKQLKHQLVIKGE 220 (314)
T ss_pred Ec--------------chhhccCC------------HHHHHHHHHHhcCCCCE
Confidence 95 33344322 23578899999999994
|
Known examples to date are restricted to the proteobacteria. |
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.7e-10 Score=107.30 Aligned_cols=123 Identities=19% Similarity=0.139 Sum_probs=81.5
Q ss_pred HHHHHHHHHHhhhcCCCCCCCeEEEEcCCccH----HHHHHHHHhCC----CcEEEEEeCCHHHHHHHHHHHH----HcC
Q 020573 177 ELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGA----IAIGIARVLGS----KGSIIAVDLNPLAAAVAAFNAQ----RYG 244 (324)
Q Consensus 177 e~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~----iai~la~~~~p----~~~V~gvDis~~al~~Ar~N~~----~~g 244 (324)
+.+.+.++..+........+.+|+|+|||||- +++.+++.+.. +.+|+|+|+|+.|++.|++++- ..+
T Consensus 81 ~~l~~~vlp~l~~~~~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~ 160 (264)
T smart00138 81 EALEEKVLPLLIASRRHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELED 160 (264)
T ss_pred HHHHHHHhHHHHHhcCCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhc
Confidence 34555554433121112234699999999996 66667765421 4789999999999999998641 011
Q ss_pred ----------------------CCCcEEEEEcccccccccCCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCC
Q 020573 245 ----------------------LQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGV 302 (324)
Q Consensus 245 ----------------------l~~rv~~~~gD~~~~l~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~ 302 (324)
+.++|+|.++|+.+... ..++||+|+|. .|..|-+
T Consensus 161 ~~~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~~~~-~~~~fD~I~cr--------------nvl~yf~-------- 217 (264)
T smart00138 161 LPKALLARYFSRVEDKYRVKPELKERVRFAKHNLLAESP-PLGDFDLIFCR--------------NVLIYFD-------- 217 (264)
T ss_pred CCHHHHhhhEEeCCCeEEEChHHhCcCEEeeccCCCCCC-ccCCCCEEEec--------------hhHHhCC--------
Confidence 22469999999987533 24789999993 2222211
Q ss_pred CcHHHHHHHHHHHhcccCCCCC
Q 020573 303 DGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 303 dGl~~~~~il~~a~~~LkpgG~ 324 (324)
-....+++++.++.|+|||+
T Consensus 218 --~~~~~~~l~~l~~~L~pGG~ 237 (264)
T smart00138 218 --EPTQRKLLNRFAEALKPGGY 237 (264)
T ss_pred --HHHHHHHHHHHHHHhCCCeE
Confidence 12234789999999999995
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.3e-10 Score=86.72 Aligned_cols=99 Identities=24% Similarity=0.364 Sum_probs=77.9
Q ss_pred eEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcCCCC
Q 020573 198 FWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYI 277 (324)
Q Consensus 198 ~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNPPYi 277 (324)
+++|+|||+|.++..+++ . ...+++++|+++.++..++++....+ ..+++++.+|+.+......++||+|++|+++.
T Consensus 1 ~ildig~G~G~~~~~~~~-~-~~~~~~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~ 77 (107)
T cd02440 1 RVLDLGCGTGALALALAS-G-PGARVTGVDISPVALELARKAAAALL-ADNVEVLKGDAEELPPEADESFDVIISDPPLH 77 (107)
T ss_pred CeEEEcCCccHHHHHHhc-C-CCCEEEEEeCCHHHHHHHHHHHhccc-ccceEEEEcChhhhccccCCceEEEEEcccee
Confidence 489999999999999988 3 56899999999999999986544443 34699999999876532246899999999875
Q ss_pred CCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 278 PSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 278 ~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
.. .+....+++.+.+.|++||+
T Consensus 78 ~~-------------------------~~~~~~~l~~~~~~l~~~g~ 99 (107)
T cd02440 78 HL-------------------------VEDLARFLEEARRLLKPGGV 99 (107)
T ss_pred eh-------------------------hhHHHHHHHHHHHHcCCCCE
Confidence 31 12344688888999999984
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.7e-10 Score=115.42 Aligned_cols=108 Identities=18% Similarity=0.227 Sum_probs=80.4
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHH-----cCC-CCcEEEEEcccccccccCCCCee
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR-----YGL-QDIIEIRQGSWFGKLKDVEGKLS 268 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~-----~gl-~~rv~~~~gD~~~~l~~~~~~fD 268 (324)
++++|||+|||+|..+..+++. ++..+|+++|+|+++++.|++|... ..+ .++++++.+|..+.+....++||
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~-~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKY-PDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhC-CCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 4679999999999999999875 2337999999999999999996321 122 25799999999886654457999
Q ss_pred EEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 269 GVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 269 lIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
+|++|+|......... . ..+++++.+.++|||||+
T Consensus 376 vIi~D~~~~~~~~~~~------L---------------~t~ef~~~~~~~L~pgG~ 410 (521)
T PRK03612 376 VIIVDLPDPSNPALGK------L---------------YSVEFYRLLKRRLAPDGL 410 (521)
T ss_pred EEEEeCCCCCCcchhc------c---------------chHHHHHHHHHhcCCCeE
Confidence 9999987532111000 1 124678888999999995
|
|
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.1e-10 Score=102.85 Aligned_cols=98 Identities=20% Similarity=0.132 Sum_probs=74.8
Q ss_pred CCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcCC
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPP 275 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNPP 275 (324)
-.+++|+|||.|.++..||.+. .+++++|+|+.|++.|++.+... + +|+++++|+-+..+ .++||+||.
T Consensus 44 y~~alEvGCs~G~lT~~LA~rC---d~LlavDis~~Al~~Ar~Rl~~~--~-~V~~~~~dvp~~~P--~~~FDLIV~--- 112 (201)
T PF05401_consen 44 YRRALEVGCSIGVLTERLAPRC---DRLLAVDISPRALARARERLAGL--P-HVEWIQADVPEFWP--EGRFDLIVL--- 112 (201)
T ss_dssp EEEEEEE--TTSHHHHHHGGGE---EEEEEEES-HHHHHHHHHHTTT---S-SEEEEES-TTT-----SS-EEEEEE---
T ss_pred cceeEecCCCccHHHHHHHHhh---CceEEEeCCHHHHHHHHHhcCCC--C-CeEEEECcCCCCCC--CCCeeEEEE---
Confidence 3589999999999999999986 68999999999999999987643 3 59999999977654 479999999
Q ss_pred CCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 276 YIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 276 Yi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
.||..|-. ..+.++.++......|+|||.
T Consensus 113 -----------SEVlYYL~---------~~~~L~~~l~~l~~~L~pgG~ 141 (201)
T PF05401_consen 113 -----------SEVLYYLD---------DAEDLRAALDRLVAALAPGGH 141 (201)
T ss_dssp -----------ES-GGGSS---------SHHHHHHHHHHHHHTEEEEEE
T ss_pred -----------ehHhHcCC---------CHHHHHHHHHHHHHHhCCCCE
Confidence 57767632 246778899999999999994
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=99.15 E-value=4.6e-10 Score=101.14 Aligned_cols=103 Identities=16% Similarity=0.064 Sum_probs=73.1
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHc-----------CCCCcEEEEEcccccccccC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRY-----------GLQDIIEIRQGSWFGKLKDV 263 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~-----------gl~~rv~~~~gD~~~~l~~~ 263 (324)
++.+|||+|||.|..++.||++ +.+|+|+|+|+.|++.+....... .-..+|+++++|+++.....
T Consensus 34 ~~~rvLd~GCG~G~da~~LA~~---G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~ 110 (213)
T TIGR03840 34 AGARVFVPLCGKSLDLAWLAEQ---GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAAD 110 (213)
T ss_pred CCCeEEEeCCCchhHHHHHHhC---CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCccc
Confidence 4569999999999999999985 579999999999999864321100 01235999999998854322
Q ss_pred CCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 264 EGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 264 ~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
.++||.|+-.--+ ..++++ .-..+++...++|||||+
T Consensus 111 ~~~fD~i~D~~~~------~~l~~~------------------~R~~~~~~l~~lLkpgG~ 147 (213)
T TIGR03840 111 LGPVDAVYDRAAL------IALPEE------------------MRQRYAAHLLALLPPGAR 147 (213)
T ss_pred CCCcCEEEechhh------ccCCHH------------------HHHHHHHHHHHHcCCCCe
Confidence 3578988863111 122222 234688999999999994
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.4e-10 Score=102.91 Aligned_cols=95 Identities=25% Similarity=0.179 Sum_probs=76.1
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNP 274 (324)
...+|.|||||+|..+-.|++++ |.+.|+|+|-|++|++.|++. +. +++|.++|..+.-+ +..+|+|++|
T Consensus 30 ~~~~v~DLGCGpGnsTelL~~Rw-P~A~i~GiDsS~~Mla~Aa~r-----lp-~~~f~~aDl~~w~p--~~~~dllfaN- 99 (257)
T COG4106 30 RPRRVVDLGCGPGNSTELLARRW-PDAVITGIDSSPAMLAKAAQR-----LP-DATFEEADLRTWKP--EQPTDLLFAN- 99 (257)
T ss_pred ccceeeecCCCCCHHHHHHHHhC-CCCeEeeccCCHHHHHHHHHh-----CC-CCceecccHhhcCC--CCccchhhhh-
Confidence 45689999999999999999998 899999999999999998654 23 49999999877544 3689999998
Q ss_pred CCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 275 PYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
.|..|-|.- -+++..-...|.|||+
T Consensus 100 -------------AvlqWlpdH------------~~ll~rL~~~L~Pgg~ 124 (257)
T COG4106 100 -------------AVLQWLPDH------------PELLPRLVSQLAPGGV 124 (257)
T ss_pred -------------hhhhhcccc------------HHHHHHHHHhhCCCce
Confidence 334555532 1456666788999995
|
|
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=99.13 E-value=5.7e-10 Score=100.58 Aligned_cols=90 Identities=27% Similarity=0.314 Sum_probs=68.7
Q ss_pred HHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccc
Q 020573 178 LMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWF 257 (324)
Q Consensus 178 ~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~ 257 (324)
...+.+..++ ......++.+|||+|||+|.++..+++. ..+|+|+|+|+.+++.|+++....+..+++.+..+|+.
T Consensus 47 ~~~~~~~~~l-~~~~~~~~~~vLDvGcG~G~~~~~l~~~---~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~ 122 (230)
T PRK07580 47 RMRDTVLSWL-PADGDLTGLRILDAGCGVGSLSIPLARR---GAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLE 122 (230)
T ss_pred HHHHHHHHHH-HhcCCCCCCEEEEEeCCCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCch
Confidence 3444455554 2211234679999999999999999886 25799999999999999999988887677999999943
Q ss_pred cccccCCCCeeEEEEcCC
Q 020573 258 GKLKDVEGKLSGVVSNPP 275 (324)
Q Consensus 258 ~~l~~~~~~fDlIVsNPP 275 (324)
. ..+.||+|+++=.
T Consensus 123 ~----~~~~fD~v~~~~~ 136 (230)
T PRK07580 123 S----LLGRFDTVVCLDV 136 (230)
T ss_pred h----ccCCcCEEEEcch
Confidence 2 2368999998633
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.5e-09 Score=103.05 Aligned_cols=154 Identities=16% Similarity=0.151 Sum_probs=98.9
Q ss_pred CCCceeEEe-cccccCeeeeeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEE
Q 020573 146 RKPFQYLVG-CEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSII 224 (324)
Q Consensus 146 ~~pl~yi~g-~~~f~~l~~~v~~~vliPrp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~ 224 (324)
.-+.|.|.= +..-+|..+.++..+-+-..+ |.....++..+ .......+++||++|||.|.++..+++. .+..+|+
T Consensus 43 ~s~yQ~i~v~~~~~~g~~L~lDg~~q~~~~d-e~~Y~e~l~h~-~l~~~~~pkrVLiIGgG~G~~~rellk~-~~v~~V~ 119 (308)
T PLN02366 43 KSDFQDVLVFESATYGKVLVLDGVIQLTERD-ECAYQEMITHL-PLCSIPNPKKVLVVGGGDGGVLREIARH-SSVEQID 119 (308)
T ss_pred cCCCeeEEEEEcCCCceEEEECCEeeecCcc-HHHHHHHHHHH-HHhhCCCCCeEEEEcCCccHHHHHHHhC-CCCCeEE
Confidence 346666533 222235666666554333333 33333333222 1111234679999999999999999986 3457899
Q ss_pred EEeCCHHHHHHHHHHHHHc--CC-CCcEEEEEcccccccccC-CCCeeEEEEcCCCCCCCCcccchhhhhcccccccccC
Q 020573 225 AVDLNPLAAAVAAFNAQRY--GL-QDIIEIRQGSWFGKLKDV-EGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDG 300 (324)
Q Consensus 225 gvDis~~al~~Ar~N~~~~--gl-~~rv~~~~gD~~~~l~~~-~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~g 300 (324)
.||+++++++.|++..... ++ .+|++++.+|..+.+... .++||+|+++.+-- .. |.
T Consensus 120 ~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvIi~D~~dp-~~-------------~~----- 180 (308)
T PLN02366 120 ICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAIIVDSSDP-VG-------------PA----- 180 (308)
T ss_pred EEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEEEEcCCCC-CC-------------ch-----
Confidence 9999999999999987643 23 358999999987765443 46899999974311 00 00
Q ss_pred CCCcHHHHHHHHHHHhcccCCCCC
Q 020573 301 GVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 301 g~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
.--..+.+++.+.+.|+|||+
T Consensus 181 ---~~L~t~ef~~~~~~~L~pgGv 201 (308)
T PLN02366 181 ---QELFEKPFFESVARALRPGGV 201 (308)
T ss_pred ---hhhhHHHHHHHHHHhcCCCcE
Confidence 011235788899999999995
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=99.11 E-value=6.1e-10 Score=98.00 Aligned_cols=102 Identities=24% Similarity=0.318 Sum_probs=71.1
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccc------c-cCCCC
Q 020573 194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKL------K-DVEGK 266 (324)
Q Consensus 194 ~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l------~-~~~~~ 266 (324)
.++.+|||+|||+|.++..+++.+.+.++|+|+|+|+.+ .. .+++++++|+.+.. . ...++
T Consensus 31 ~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~-~~i~~~~~d~~~~~~~~~l~~~~~~~~ 98 (188)
T TIGR00438 31 KPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PI-ENVDFIRGDFTDEEVLNKIRERVGDDK 98 (188)
T ss_pred CCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cC-CCceEEEeeCCChhHHHHHHHHhCCCC
Confidence 457799999999999999999886556789999999854 12 24888999986531 0 11357
Q ss_pred eeEEEEcC--CCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 267 LSGVVSNP--PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 267 fDlIVsNP--PYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
||+|++|+ ++........+ ..++..+.++..+.++|+|||.
T Consensus 99 ~D~V~~~~~~~~~g~~~~~~~-----------------~~~~~~~~~l~~~~~~LkpgG~ 141 (188)
T TIGR00438 99 VDVVMSDAAPNISGYWDIDHL-----------------RSIDLVELALDIAKEVLKPKGN 141 (188)
T ss_pred ccEEEcCCCCCCCCCccccHH-----------------HHHHHHHHHHHHHHHHccCCCE
Confidence 99999985 33211111000 0123456789999999999994
|
|
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=99.11 E-value=8.3e-10 Score=104.47 Aligned_cols=124 Identities=14% Similarity=0.081 Sum_probs=83.2
Q ss_pred cchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEE
Q 020573 173 RPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIR 252 (324)
Q Consensus 173 rp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~ 252 (324)
|.+.+.+.+.+.+.. ... ..+.+|||+|||+|..+..+++.+....+|+|+|+|++|++.|++++......-++.++
T Consensus 44 r~E~~il~~~~~~ia-~~~--~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i 120 (301)
T TIGR03438 44 RTEAAILERHADEIA-AAT--GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGI 120 (301)
T ss_pred HHHHHHHHHHHHHHH-Hhh--CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEE
Confidence 455566665555544 211 23568999999999999999998632579999999999999999998764322347889
Q ss_pred EcccccccccCCCCe---e--EEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 253 QGSWFGKLKDVEGKL---S--GVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 253 ~gD~~~~l~~~~~~f---D--lIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
++|+.+.+... ..+ + ++++.-. +. .++ .+....+++++.++|+|||+
T Consensus 121 ~gD~~~~~~~~-~~~~~~~~~~~~~gs~------~~-------~~~-----------~~e~~~~L~~i~~~L~pgG~ 172 (301)
T TIGR03438 121 CADFTQPLALP-PEPAAGRRLGFFPGST------IG-------NFT-----------PEEAVAFLRRIRQLLGPGGG 172 (301)
T ss_pred EEcccchhhhh-cccccCCeEEEEeccc------cc-------CCC-----------HHHHHHHHHHHHHhcCCCCE
Confidence 99998754321 222 2 3332111 11 111 22345789999999999994
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.1e-09 Score=105.29 Aligned_cols=155 Identities=12% Similarity=0.104 Sum_probs=96.9
Q ss_pred cCCCceeEEecccccCeeeeeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEE
Q 020573 145 KRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSII 224 (324)
Q Consensus 145 ~~~pl~yi~g~~~f~~l~~~v~~~vliPrp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~ 224 (324)
...|.|.|.-.. ..++.+.++..+-+--.+...+.+.+.... . .....+.+||++|||.|..+..+.+. .+..+|+
T Consensus 103 ~~S~yQ~I~I~e-t~~~~L~LDG~~Q~se~DE~iYHE~Lvhp~-m-~~h~~PkrVLIIGgGdG~tlrelLk~-~~v~~It 178 (374)
T PRK01581 103 EKSNYQNINLLQ-VSDIRLYLDKQLQFSSVDEQIYHEALVHPI-M-SKVIDPKRVLILGGGDGLALREVLKY-ETVLHVD 178 (374)
T ss_pred cCCCCceEEEEE-cCCEEEEECCeeccccccHHHHHHHHHHHH-H-HhCCCCCEEEEECCCHHHHHHHHHhc-CCCCeEE
Confidence 345777764311 112345555544333223222233322211 0 01234579999999999998888875 3567999
Q ss_pred EEeCCHHHHHHHHHHH-----HHcCC-CCcEEEEEcccccccccCCCCeeEEEEcCCCCCCCCcccchhhhhcccccccc
Q 020573 225 AVDLNPLAAAVAAFNA-----QRYGL-QDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLAL 298 (324)
Q Consensus 225 gvDis~~al~~Ar~N~-----~~~gl-~~rv~~~~gD~~~~l~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL 298 (324)
+||+++++++.|+++- .+..+ .+|++++.+|..+.+....++||+|++|.|--..... .
T Consensus 179 ~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YDVIIvDl~DP~~~~~-----~---------- 243 (374)
T PRK01581 179 LVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYDVIIIDFPDPATELL-----S---------- 243 (374)
T ss_pred EEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCccEEEEcCCCccccch-----h----------
Confidence 9999999999999621 11122 4689999999998766556789999999653111000 0
Q ss_pred cCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 299 DGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 299 ~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
--.-+.+++.+.+.|+|||+
T Consensus 244 ------~LyT~EFy~~~~~~LkPgGV 263 (374)
T PRK01581 244 ------TLYTSELFARIATFLTEDGA 263 (374)
T ss_pred ------hhhHHHHHHHHHHhcCCCcE
Confidence 01124688899999999995
|
|
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.11 E-value=4.1e-10 Score=107.48 Aligned_cols=104 Identities=22% Similarity=0.269 Sum_probs=82.8
Q ss_pred eeeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHH
Q 020573 163 LSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR 242 (324)
Q Consensus 163 ~~v~~~vliPrp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~ 242 (324)
+.++.-+|.||-.+|-. .+.+.. ..+.+|+|+++|.|.+++.+|+. ....|+|+|+||.|++..++|++.
T Consensus 164 vD~~Kv~Fsprl~~ER~--Rva~~v------~~GE~V~DmFAGVGpfsi~~Ak~--g~~~V~A~diNP~A~~~L~eNi~L 233 (341)
T COG2520 164 VDVAKVYFSPRLSTERA--RVAELV------KEGETVLDMFAGVGPFSIPIAKK--GRPKVYAIDINPDAVEYLKENIRL 233 (341)
T ss_pred EchHHeEECCCchHHHH--HHHhhh------cCCCEEEEccCCcccchhhhhhc--CCceEEEEecCHHHHHHHHHHHHh
Confidence 34455688898666642 122222 13679999999999999999996 334599999999999999999999
Q ss_pred cCCCCcEEEEEcccccccccCCCCeeEEEEcCCCC
Q 020573 243 YGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYI 277 (324)
Q Consensus 243 ~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNPPYi 277 (324)
|++.+++..++||..+..... +.+|-|++|-|..
T Consensus 234 N~v~~~v~~i~gD~rev~~~~-~~aDrIim~~p~~ 267 (341)
T COG2520 234 NKVEGRVEPILGDAREVAPEL-GVADRIIMGLPKS 267 (341)
T ss_pred cCccceeeEEeccHHHhhhcc-ccCCEEEeCCCCc
Confidence 999999999999998866543 6899999997763
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=99.10 E-value=7.4e-10 Score=103.22 Aligned_cols=107 Identities=12% Similarity=0.130 Sum_probs=80.6
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcC--C-CCcEEEEEcccccccccCCCCeeEEE
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYG--L-QDIIEIRQGSWFGKLKDVEGKLSGVV 271 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~g--l-~~rv~~~~gD~~~~l~~~~~~fDlIV 271 (324)
.+.+||++|||+|.++..+++.. +..+|+++|+++++++.|+++....+ + ..+++++.+|..+.+....++||+||
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~-~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi 150 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHK-SVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII 150 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCC-CcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence 35699999999999999888863 46789999999999999999886542 1 24689999998776554457999999
Q ss_pred EcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 272 SNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 272 sNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
+|++.-.... .. + ..+.+++.+.+.|+|||+
T Consensus 151 ~D~~~~~~~~--------------~~-------l-~~~ef~~~~~~~L~pgG~ 181 (270)
T TIGR00417 151 VDSTDPVGPA--------------ET-------L-FTKEFYELLKKALNEDGI 181 (270)
T ss_pred EeCCCCCCcc--------------cc-------h-hHHHHHHHHHHHhCCCcE
Confidence 9976421100 00 0 124678888999999995
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.10 E-value=9e-10 Score=99.61 Aligned_cols=100 Identities=17% Similarity=0.117 Sum_probs=73.1
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCC--------------CCcEEEEEccccccc
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGL--------------QDIIEIRQGSWFGKL 260 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl--------------~~rv~~~~gD~~~~l 260 (324)
++.+|||+|||.|..++.||++ +.+|+|||+|+.|++.+.. ++++ ..+|++.++|+++..
T Consensus 37 ~~~rvL~~gCG~G~da~~LA~~---G~~V~avD~s~~Ai~~~~~---~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~ 110 (218)
T PRK13255 37 AGSRVLVPLCGKSLDMLWLAEQ---GHEVLGVELSELAVEQFFA---ENGLTPQTRQSGEFEHYQAGEITIYCGDFFALT 110 (218)
T ss_pred CCCeEEEeCCCChHhHHHHHhC---CCeEEEEccCHHHHHHHHH---HcCCCccccccccccccccCceEEEECcccCCC
Confidence 3569999999999999999985 5899999999999998642 2222 246999999999864
Q ss_pred ccCCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 261 KDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 261 ~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
....+.||.|+-- ..+..++++ .-..+++...++|+|||+
T Consensus 111 ~~~~~~fd~v~D~------~~~~~l~~~------------------~R~~~~~~l~~lL~pgG~ 150 (218)
T PRK13255 111 AADLADVDAVYDR------AALIALPEE------------------MRERYVQQLAALLPAGCR 150 (218)
T ss_pred cccCCCeeEEEeh------HhHhhCCHH------------------HHHHHHHHHHHHcCCCCe
Confidence 3333578988851 111222222 234688899999999984
|
|
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=7.6e-10 Score=103.13 Aligned_cols=71 Identities=18% Similarity=0.214 Sum_probs=56.6
Q ss_pred CCeEEEEcCCccHHHHHHHHHhCC--CcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEc
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLGS--KGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN 273 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~p--~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsN 273 (324)
..+|||+|||+|.++..+++.++. ..+|+|+|+|+.|++.|+++. .++.+..+|..+ ++...++||+|+++
T Consensus 86 ~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~------~~~~~~~~d~~~-lp~~~~sfD~I~~~ 158 (272)
T PRK11088 86 ATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY------PQVTFCVASSHR-LPFADQSLDAIIRI 158 (272)
T ss_pred CCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC------CCCeEEEeeccc-CCCcCCceeEEEEe
Confidence 468999999999999999987522 247999999999999998752 248899999876 33334689999984
|
|
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.8e-09 Score=96.14 Aligned_cols=104 Identities=23% Similarity=0.355 Sum_probs=84.1
Q ss_pred ccCeeeeeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Q 020573 158 WRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAA 237 (324)
Q Consensus 158 f~~l~~~v~~~vliPrp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar 237 (324)
|-+..+-+..+..|-.|. ++-.+.+++ ...++.+|||+|||||+.+..+|+.. .+|+++|+.++..+.|+
T Consensus 42 Y~d~~lpi~~gqtis~P~---~vA~m~~~L----~~~~g~~VLEIGtGsGY~aAvla~l~---~~V~siEr~~~L~~~A~ 111 (209)
T COG2518 42 YEDRALPIGCGQTISAPH---MVARMLQLL----ELKPGDRVLEIGTGSGYQAAVLARLV---GRVVSIERIEELAEQAR 111 (209)
T ss_pred ccCCcccCCCCceecCcH---HHHHHHHHh----CCCCCCeEEEECCCchHHHHHHHHHh---CeEEEEEEcHHHHHHHH
Confidence 345556666777776664 444445544 34467899999999999999999985 49999999999999999
Q ss_pred HHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEc
Q 020573 238 FNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN 273 (324)
Q Consensus 238 ~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsN 273 (324)
+|++..|+.| |.++++|-...++. ...||.|+.+
T Consensus 112 ~~L~~lg~~n-V~v~~gDG~~G~~~-~aPyD~I~Vt 145 (209)
T COG2518 112 RNLETLGYEN-VTVRHGDGSKGWPE-EAPYDRIIVT 145 (209)
T ss_pred HHHHHcCCCc-eEEEECCcccCCCC-CCCcCEEEEe
Confidence 9999999987 99999999887765 4799999985
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.7e-09 Score=96.49 Aligned_cols=100 Identities=19% Similarity=0.189 Sum_probs=77.1
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNP 274 (324)
++.+|||+|||+|.++..+++..+...+++++|+++.+++.++++.. ...+++++.+|+.+.. ...++||+|+++=
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~---~~~~i~~~~~d~~~~~-~~~~~~D~i~~~~ 114 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE---LPLNIEFIQADAEALP-FEDNSFDAVTIAF 114 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc---cCCCceEEecchhcCC-CCCCcEEEEEEee
Confidence 46799999999999999999986322799999999999999999876 3356999999988743 2246899999851
Q ss_pred CCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 275 PYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
-+ .+. .....+++.+.+.|+|||+
T Consensus 115 ~~--------------~~~------------~~~~~~l~~~~~~L~~gG~ 138 (223)
T TIGR01934 115 GL--------------RNV------------TDIQKALREMYRVLKPGGR 138 (223)
T ss_pred ee--------------CCc------------ccHHHHHHHHHHHcCCCcE
Confidence 11 111 1234688999999999994
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.2e-09 Score=106.09 Aligned_cols=78 Identities=22% Similarity=0.155 Sum_probs=67.7
Q ss_pred CeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcCC
Q 020573 197 GFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPP 275 (324)
Q Consensus 197 ~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNPP 275 (324)
.+|||++||||..++.++++.+...+|+++|+|++|++.+++|++.+++. ++++.++|....+.....+||+|..||+
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~-~~~v~~~Da~~~l~~~~~~fDvIdlDPf 123 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVE-NIEVPNEDAANVLRYRNRKFHVIDIDPF 123 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEchhHHHHHHHhCCCCCEEEeCCC
Confidence 48999999999999999998423368999999999999999999999886 4999999998766544468999999994
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.9e-09 Score=97.64 Aligned_cols=100 Identities=23% Similarity=0.307 Sum_probs=76.1
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEc
Q 020573 194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN 273 (324)
Q Consensus 194 ~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsN 273 (324)
.++.+|||+|||+|.++..+++. ..+|+++|+++.+++.|++|+...+. ++.+..+|+.+......++||+|+++
T Consensus 47 ~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~fD~Ii~~ 121 (233)
T PRK05134 47 LFGKRVLDVGCGGGILSESMARL---GADVTGIDASEENIEVARLHALESGL--KIDYRQTTAEELAAEHPGQFDVVTCM 121 (233)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc---CCeEEEEcCCHHHHHHHHHHHHHcCC--ceEEEecCHHHhhhhcCCCccEEEEh
Confidence 35678999999999999999875 36899999999999999999987776 48888888866432234689999995
Q ss_pred CCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 274 PPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
-.+ .|-+. ...+++.+.++|+|||+
T Consensus 122 ~~l--------------~~~~~------------~~~~l~~~~~~L~~gG~ 146 (233)
T PRK05134 122 EML--------------EHVPD------------PASFVRACAKLVKPGGL 146 (233)
T ss_pred hHh--------------hccCC------------HHHHHHHHHHHcCCCcE
Confidence 222 22111 12567888888999884
|
|
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.6e-09 Score=95.94 Aligned_cols=100 Identities=22% Similarity=0.210 Sum_probs=76.2
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNP 274 (324)
.+.+|||+|||+|.++..+++. ..+++++|+++.+++.+++++...+.. ++.+..+|+.+......++||+|+++-
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~D~i~~~~ 120 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARL---GANVTGIDASEENIEVAKLHAKKDPLL-KIEYRCTSVEDLAEKGAKSFDVVTCME 120 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEeCCHHHhhcCCCCCccEEEehh
Confidence 4679999999999999998875 257999999999999999999887764 488999987664333236899999952
Q ss_pred CCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 275 PYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
-+ .|.+ ....+++.+.+.|++||.
T Consensus 121 ~l--------------~~~~------------~~~~~l~~~~~~L~~gG~ 144 (224)
T TIGR01983 121 VL--------------EHVP------------DPQAFIRACAQLLKPGGI 144 (224)
T ss_pred HH--------------HhCC------------CHHHHHHHHHHhcCCCcE
Confidence 21 2211 123677888888999884
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.4e-09 Score=108.99 Aligned_cols=100 Identities=17% Similarity=0.142 Sum_probs=75.0
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccc-cccCCCCeeEEEEc
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGK-LKDVEGKLSGVVSN 273 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~-l~~~~~~fDlIVsN 273 (324)
.+.+|||+|||+|.++..+++.. .+|+|+|+++.+++.+++ .++...++.++++|+.+. ++...++||+|++|
T Consensus 37 ~~~~vLDlGcG~G~~~~~la~~~---~~v~giD~s~~~l~~a~~---~~~~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~ 110 (475)
T PLN02336 37 EGKSVLELGAGIGRFTGELAKKA---GQVIALDFIESVIKKNES---INGHYKNVKFMCADVTSPDLNISDGSVDLIFSN 110 (475)
T ss_pred CCCEEEEeCCCcCHHHHHHHhhC---CEEEEEeCCHHHHHHHHH---HhccCCceEEEEecccccccCCCCCCEEEEehh
Confidence 45689999999999999999874 589999999999987654 233334699999998642 22234689999998
Q ss_pred CCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 274 PPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
.++. |-+ -+....+++++.++|||||+
T Consensus 111 ~~l~--------------~l~----------~~~~~~~l~~~~r~Lk~gG~ 137 (475)
T PLN02336 111 WLLM--------------YLS----------DKEVENLAERMVKWLKVGGY 137 (475)
T ss_pred hhHH--------------hCC----------HHHHHHHHHHHHHhcCCCeE
Confidence 6642 111 11234789999999999995
|
|
| >KOG2730 consensus Methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.1e-09 Score=97.43 Aligned_cols=99 Identities=26% Similarity=0.352 Sum_probs=80.5
Q ss_pred ccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEE
Q 020573 172 PRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEI 251 (324)
Q Consensus 172 Prp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~ 251 (324)
|.++.+.+...+...+ ....|+|..||.|.-++..|... ..|+++|++|.-++.|++|++-+|+++||.|
T Consensus 78 pe~ia~~iA~~v~~~~-------~~~~iidaf~g~gGntiqfa~~~---~~VisIdiDPikIa~AkhNaeiYGI~~rItF 147 (263)
T KOG2730|consen 78 PEKIAEHIANRVVACM-------NAEVIVDAFCGVGGNTIQFALQG---PYVIAIDIDPVKIACARHNAEVYGVPDRITF 147 (263)
T ss_pred cHHHHHHHHHHHHHhc-------CcchhhhhhhcCCchHHHHHHhC---CeEEEEeccHHHHHHHhccceeecCCceeEE
Confidence 4556666666655543 24589999999999999999875 6899999999999999999999999999999
Q ss_pred EEcccccccccC---CCCeeEEEEcCCCCCCC
Q 020573 252 RQGSWFGKLKDV---EGKLSGVVSNPPYIPSD 280 (324)
Q Consensus 252 ~~gD~~~~l~~~---~~~fDlIVsNPPYi~~~ 280 (324)
++|||++....+ ...+|++..-||+...+
T Consensus 148 I~GD~ld~~~~lq~~K~~~~~vf~sppwggp~ 179 (263)
T KOG2730|consen 148 ICGDFLDLASKLKADKIKYDCVFLSPPWGGPS 179 (263)
T ss_pred EechHHHHHHHHhhhhheeeeeecCCCCCCcc
Confidence 999998754332 34578999999987543
|
|
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=4.6e-09 Score=98.39 Aligned_cols=116 Identities=12% Similarity=0.059 Sum_probs=78.6
Q ss_pred HHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccc
Q 020573 177 ELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSW 256 (324)
Q Consensus 177 e~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~ 256 (324)
.-|...++.-+ ......++.+|||+|||+|.++..++...++..+|+|||+++.+++...+.++.. .+|.++.+|.
T Consensus 115 SKlaa~i~~g~-~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r---~NI~~I~~Da 190 (293)
T PTZ00146 115 SKLAAAIIGGV-ANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR---PNIVPIIEDA 190 (293)
T ss_pred cHHHHHHHCCc-ceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc---CCCEEEECCc
Confidence 34444444333 2223345679999999999999999999877789999999998665444443322 3488999998
Q ss_pred cccc--ccCCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 257 FGKL--KDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 257 ~~~l--~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
..+. ....+.||+|+++-. +| +..+.++.++.++|||||.
T Consensus 191 ~~p~~y~~~~~~vDvV~~Dva-----------------~p-----------dq~~il~~na~r~LKpGG~ 232 (293)
T PTZ00146 191 RYPQKYRMLVPMVDVIFADVA-----------------QP-----------DQARIVALNAQYFLKNGGH 232 (293)
T ss_pred cChhhhhcccCCCCEEEEeCC-----------------Cc-----------chHHHHHHHHHHhccCCCE
Confidence 6542 112357999999631 11 1223456678999999984
|
|
| >COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.6e-09 Score=107.39 Aligned_cols=147 Identities=23% Similarity=0.269 Sum_probs=99.0
Q ss_pred CCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCC---CcEEEEEeCCHHHHHHHHHHHHHc
Q 020573 167 EGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGS---KGSIIAVDLNPLAAAVAAFNAQRY 243 (324)
Q Consensus 167 ~~vliPrp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p---~~~V~gvDis~~al~~Ar~N~~~~ 243 (324)
...|.||..++++++.+.. ....+|+|.+||||.+.+..++.++. +..++|.|+++....+|+.|+-.+
T Consensus 166 GEfyTP~~v~~liv~~l~~--------~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lh 237 (489)
T COG0286 166 GEFYTPREVSELIVELLDP--------EPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILH 237 (489)
T ss_pred CccCChHHHHHHHHHHcCC--------CCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHh
Confidence 4578899999988887653 12348999999999999999887732 367999999999999999999999
Q ss_pred CCCCcEEEEEccccccccc----CCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccC-CCCcHHHHHHHHHHHhcc
Q 020573 244 GLQDIIEIRQGSWFGKLKD----VEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDG-GVDGLDYLLHLCNGTASM 318 (324)
Q Consensus 244 gl~~rv~~~~gD~~~~l~~----~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~g-g~dGl~~~~~il~~a~~~ 318 (324)
|+...+....+|-+..... ..++||+|++||||.........-.. ....+....| ..-.-.....++++...+
T Consensus 238 gi~~~~~i~~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~af~~h~~~~ 315 (489)
T COG0286 238 GIEGDANIRHGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLES--EQDERFFFYGVFPTKNSADLAFLQHILYK 315 (489)
T ss_pred CCCccccccccccccCCcccccCCccceeEEEeCCCCCccccccccccc--cccccccccCCCCCCCchHHHHHHHHHHh
Confidence 9874467777776653322 23679999999999733322211000 0111111111 111122224577777888
Q ss_pred cCCCC
Q 020573 319 LKPDK 323 (324)
Q Consensus 319 LkpgG 323 (324)
|+|||
T Consensus 316 l~~~g 320 (489)
T COG0286 316 LKPGG 320 (489)
T ss_pred cCCCc
Confidence 88876
|
|
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.9e-09 Score=97.94 Aligned_cols=67 Identities=18% Similarity=0.182 Sum_probs=54.5
Q ss_pred CCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcC
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNP 274 (324)
+.+|||+|||+|.++..+++.+ +.+|+|+|+|++|++.|+++ ..++++|+.+ ++..+++||+|+++-
T Consensus 52 ~~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~---------~~~~~~d~~~-lp~~d~sfD~v~~~~ 118 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNLVA---------DDKVVGSFEA-LPFRDKSFDVVMSSF 118 (226)
T ss_pred CCeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHhc---------cceEEechhh-CCCCCCCEEEEEecC
Confidence 5699999999999999999874 47999999999999999864 1346788765 344457999999963
|
|
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.9e-09 Score=98.24 Aligned_cols=77 Identities=22% Similarity=0.304 Sum_probs=63.3
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCee---EE
Q 020573 194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLS---GV 270 (324)
Q Consensus 194 ~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fD---lI 270 (324)
.++.+|||+|||+|.++..+++.. .+|+++|+++.+++.++.+... ..+++++++|+.+... ..+| +|
T Consensus 28 ~~~~~VLEiG~G~G~lt~~L~~~~---~~v~~iE~d~~~~~~l~~~~~~---~~~v~v~~~D~~~~~~---~~~d~~~~v 98 (253)
T TIGR00755 28 LEGDVVLEIGPGLGALTEPLLKRA---KKVTAIEIDPRLAEILRKLLSL---YERLEVIEGDALKVDL---PDFPKQLKV 98 (253)
T ss_pred CCcCEEEEeCCCCCHHHHHHHHhC---CcEEEEECCHHHHHHHHHHhCc---CCcEEEEECchhcCCh---hHcCCcceE
Confidence 346799999999999999999974 4699999999999999988743 3469999999977422 2466 99
Q ss_pred EEcCCCCCC
Q 020573 271 VSNPPYIPS 279 (324)
Q Consensus 271 VsNPPYi~~ 279 (324)
++|+||..+
T Consensus 99 vsNlPy~i~ 107 (253)
T TIGR00755 99 VSNLPYNIS 107 (253)
T ss_pred EEcCChhhH
Confidence 999999643
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.2e-09 Score=97.51 Aligned_cols=76 Identities=33% Similarity=0.384 Sum_probs=56.1
Q ss_pred CCCeEEEEcCCccHHHHHHHHHh---CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEE
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVL---GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVV 271 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~---~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIV 271 (324)
++.+|||+|||+|.++..+++.. +++.+|+|+|+|++|++.|+++....+ +++..++... +....++||+|+
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~----~~~~~~~~~~-l~~~~~~fD~V~ 134 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPG----VTFRQAVSDE-LVAEGERFDVVT 134 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCC----CeEEEEeccc-ccccCCCccEEE
Confidence 45699999999999999988643 345699999999999999998865443 4444444322 122246899999
Q ss_pred EcCC
Q 020573 272 SNPP 275 (324)
Q Consensus 272 sNPP 275 (324)
+|--
T Consensus 135 ~~~~ 138 (232)
T PRK06202 135 SNHF 138 (232)
T ss_pred ECCe
Confidence 9844
|
|
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=98.92 E-value=3.4e-09 Score=89.52 Aligned_cols=90 Identities=18% Similarity=0.220 Sum_probs=63.4
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEc
Q 020573 194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN 273 (324)
Q Consensus 194 ~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsN 273 (324)
..+.+|||+|||+|.++..+++. ..+|+|+|+++.+++. . ++.....+..+.. ...++||+|+++
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~---~~~~~g~D~~~~~~~~---------~--~~~~~~~~~~~~~-~~~~~fD~i~~~ 85 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRALAKR---GFEVTGVDISPQMIEK---------R--NVVFDNFDAQDPP-FPDGSFDLIICN 85 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHHHHT---TSEEEEEESSHHHHHH---------T--TSEEEEEECHTHH-CHSSSEEEEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHh---CCEEEEEECCHHHHhh---------h--hhhhhhhhhhhhh-ccccchhhHhhH
Confidence 35679999999999999999775 2499999999999987 1 1222222111111 124799999995
Q ss_pred CCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 274 PPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
.+..|-| ....+++.+.++|||||+
T Consensus 86 --------------~~l~~~~------------d~~~~l~~l~~~LkpgG~ 110 (161)
T PF13489_consen 86 --------------DVLEHLP------------DPEEFLKELSRLLKPGGY 110 (161)
T ss_dssp --------------SSGGGSS------------HHHHHHHHHHHCEEEEEE
T ss_pred --------------HHHhhcc------------cHHHHHHHHHHhcCCCCE
Confidence 3334432 345789999999999995
|
... |
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=98.91 E-value=6.3e-09 Score=103.43 Aligned_cols=103 Identities=23% Similarity=0.286 Sum_probs=74.4
Q ss_pred CCeEEEEcCCccHHHHHHHHH---hCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEE
Q 020573 196 DGFWVDLGTGSGAIAIGIARV---LGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVS 272 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~---~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVs 272 (324)
+..|+|+|||+|.+....++. .+...+|+|||.|+.|+...++.++.++..++|+++++|+.+.-. ..++|+|||
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~l--pekvDIIVS 264 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVEL--PEKVDIIVS 264 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCH--SS-EEEEEE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCC--CCceeEEEE
Confidence 568999999999998776654 223579999999999998888888899999999999999987433 359999999
Q ss_pred cCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 273 NPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 273 NPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
++......+| .....+..+-++|||||+
T Consensus 265 -----------ElLGsfg~nE-------------l~pE~Lda~~rfLkp~Gi 292 (448)
T PF05185_consen 265 -----------ELLGSFGDNE-------------LSPECLDAADRFLKPDGI 292 (448)
T ss_dssp --------------BTTBTTT-------------SHHHHHHHGGGGEEEEEE
T ss_pred -----------eccCCccccc-------------cCHHHHHHHHhhcCCCCE
Confidence 1111121221 223567888899999985
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=98.90 E-value=8.5e-09 Score=89.91 Aligned_cols=121 Identities=17% Similarity=0.265 Sum_probs=73.2
Q ss_pred hHHHHHHHHHHHhhh--cCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcC--CCCcEE
Q 020573 175 ETELMVDLVSDVLVR--DNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYG--LQDIIE 250 (324)
Q Consensus 175 ~te~lve~l~~~l~~--~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~g--l~~rv~ 250 (324)
-+..+.+.+...... ......+.+|||||||+|..++.+++.. ...+|+..|.++ .++..+.|++.|+ ...++.
T Consensus 23 aa~~La~~l~~~~~~~~~~~~~~~~~VLELGaG~Gl~gi~~a~~~-~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~ 100 (173)
T PF10294_consen 23 AALVLARYLLSHSESEFNPELFRGKRVLELGAGTGLPGIAAAKLF-GAARVVLTDYNE-VLELLRRNIELNGSLLDGRVS 100 (173)
T ss_dssp HHHHHHHHHHH-------GGGTTTSEEEETT-TTSHHHHHHHHT--T-SEEEEEE-S--HHHHHHHHHHTT--------E
T ss_pred hHHHHHHHHHHhcccccchhhcCCceEEEECCccchhHHHHHhcc-CCceEEEeccch-hhHHHHHHHHhcccccccccc
Confidence 344555555542100 1123457899999999999999999974 568999999998 9999999999987 667799
Q ss_pred EEEcccccccc--c-CCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCC
Q 020573 251 IRQGSWFGKLK--D-VEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDK 323 (324)
Q Consensus 251 ~~~gD~~~~l~--~-~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG 323 (324)
+..-||.+... . ...+||+|++ .++ .|.+. .+..++....++|+++|
T Consensus 101 v~~L~Wg~~~~~~~~~~~~~D~Ila--------------sDv-~Y~~~-----------~~~~L~~tl~~ll~~~~ 150 (173)
T PF10294_consen 101 VRPLDWGDELDSDLLEPHSFDVILA--------------SDV-LYDEE-----------LFEPLVRTLKRLLKPNG 150 (173)
T ss_dssp EEE--TTS-HHHHHHS-SSBSEEEE--------------ES---S-GG-----------GHHHHHHHHHHHBTT-T
T ss_pred CcEEEecCcccccccccccCCEEEE--------------ecc-cchHH-----------HHHHHHHHHHHHhCCCC
Confidence 99999977431 1 1358999998 344 23322 34467777778888876
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.90 E-value=6.8e-09 Score=98.34 Aligned_cols=76 Identities=24% Similarity=0.306 Sum_probs=66.6
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEE
Q 020573 193 GLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVS 272 (324)
Q Consensus 193 ~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVs 272 (324)
..+++.|||+|||+|.+++..|+. ...+|+|||.|.-+ +.|++.++.|++.+.|++++|...+..-+ .+++|+|||
T Consensus 58 lf~dK~VlDVGcGtGILS~F~akA--GA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~LP-~eKVDiIvS 133 (346)
T KOG1499|consen 58 LFKDKTVLDVGCGTGILSMFAAKA--GARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIELP-VEKVDIIVS 133 (346)
T ss_pred hcCCCEEEEcCCCccHHHHHHHHh--CcceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEEecC-ccceeEEee
Confidence 457889999999999999999997 36899999998665 99999999999999999999998874222 479999999
|
|
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.3e-08 Score=96.72 Aligned_cols=144 Identities=17% Similarity=0.231 Sum_probs=104.7
Q ss_pred eeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCC-CcEEEEEeCCHHHHHHHHHHHHHc
Q 020573 165 VEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGS-KGSIIAVDLNPLAAAVAAFNAQRY 243 (324)
Q Consensus 165 v~~~vliPrp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p-~~~V~gvDis~~al~~Ar~N~~~~ 243 (324)
...|.+++.....+++-.+++ ..++.+|||+|++.|.=+..+|+.... ...|+++|+++.-+...++|+++.
T Consensus 133 ~~~G~~~vQd~sS~l~a~~L~-------p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~Rl 205 (355)
T COG0144 133 FAEGLIYVQDEASQLPALVLD-------PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRL 205 (355)
T ss_pred hhceEEEEcCHHHHHHHHHcC-------CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHc
Confidence 455666666666666665553 335789999999999999999998633 256799999999999999999999
Q ss_pred CCCCcEEEEEccccccccc--CCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCc---H-HHHHHHHHHHhc
Q 020573 244 GLQDIIEIRQGSWFGKLKD--VEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDG---L-DYLLHLCNGTAS 317 (324)
Q Consensus 244 gl~~rv~~~~gD~~~~l~~--~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dG---l-~~~~~il~~a~~ 317 (324)
|+.+ +.+.+.|....... ..++||.|+.++|+...+.+ +..|.....-..+- + ..-..|+..|.+
T Consensus 206 G~~n-v~~~~~d~~~~~~~~~~~~~fD~iLlDaPCSg~G~i--------rr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~ 276 (355)
T COG0144 206 GVRN-VIVVNKDARRLAELLPGGEKFDRILLDAPCSGTGVI--------RRDPDVKWRRTPEDIAELAKLQKEILAAALK 276 (355)
T ss_pred CCCc-eEEEecccccccccccccCcCcEEEECCCCCCCccc--------ccCccccccCCHHHHHHHHHHHHHHHHHHHH
Confidence 9987 88888876532211 12369999999999877665 33333322222221 2 233689999999
Q ss_pred ccCCCCC
Q 020573 318 MLKPDKW 324 (324)
Q Consensus 318 ~LkpgG~ 324 (324)
+|||||.
T Consensus 277 ~lk~GG~ 283 (355)
T COG0144 277 LLKPGGV 283 (355)
T ss_pred hcCCCCE
Confidence 9999995
|
|
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.85 E-value=1e-08 Score=91.44 Aligned_cols=115 Identities=25% Similarity=0.309 Sum_probs=79.7
Q ss_pred HHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccc
Q 020573 179 MVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFG 258 (324)
Q Consensus 179 lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~ 258 (324)
+.+.+++.+ .. ....+.-|||+|||||.-+-.+... +-..+|+|+|+.|+++|.+ +.. + -.++.+|+-+
T Consensus 36 m~eRaLELL-al-p~~~~~~iLDIGCGsGLSg~vL~~~---Gh~wiGvDiSpsML~~a~~--~e~--e--gdlil~DMG~ 104 (270)
T KOG1541|consen 36 MAERALELL-AL-PGPKSGLILDIGCGSGLSGSVLSDS---GHQWIGVDISPSMLEQAVE--REL--E--GDLILCDMGE 104 (270)
T ss_pred HHHHHHHHh-hC-CCCCCcEEEEeccCCCcchheeccC---CceEEeecCCHHHHHHHHH--hhh--h--cCeeeeecCC
Confidence 344445544 21 2224678999999999999887664 4789999999999999997 222 1 3578889988
Q ss_pred ccccCCCCeeEEEEcCCCCCCCCcccch----hhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCC
Q 020573 259 KLKDVEGKLSGVVSNPPYIPSDDISGLQ----VEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDK 323 (324)
Q Consensus 259 ~l~~~~~~fDlIVsNPPYi~~~~~~~l~----~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG 323 (324)
.++...+.||.+|+ ++.+| ..-..|.|+.. +..|+...+..|++|+
T Consensus 105 GlpfrpGtFDg~IS---------ISAvQWLcnA~~s~~~P~~R----------l~~FF~tLy~~l~rg~ 154 (270)
T KOG1541|consen 105 GLPFRPGTFDGVIS---------ISAVQWLCNADKSLHVPKKR----------LLRFFGTLYSCLKRGA 154 (270)
T ss_pred CCCCCCCccceEEE---------eeeeeeecccCccccChHHH----------HHHHhhhhhhhhccCc
Confidence 88877899999888 22222 12224555543 3367777788888876
|
|
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.7e-08 Score=89.80 Aligned_cols=105 Identities=22% Similarity=0.314 Sum_probs=78.6
Q ss_pred eEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccccc--CCCCeeEEEEcCC
Q 020573 198 FWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKD--VEGKLSGVVSNPP 275 (324)
Q Consensus 198 ~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~--~~~~fDlIVsNPP 275 (324)
.+||+|||.|.+.+.+|+.. |+..++|+|+....+..|.+.+.+.++.| +.++++|+...+.. ..+++|.|..|-|
T Consensus 20 l~lEIG~G~G~~l~~~A~~~-Pd~n~iGiE~~~~~v~~a~~~~~~~~l~N-v~~~~~da~~~l~~~~~~~~v~~i~i~FP 97 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRN-PDINFIGIEIRKKRVAKALRKAEKRGLKN-VRFLRGDARELLRRLFPPGSVDRIYINFP 97 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHS-TTSEEEEEES-HHHHHHHHHHHHHHTTSS-EEEEES-CTTHHHHHSTTTSEEEEEEES-
T ss_pred eEEEecCCCCHHHHHHHHHC-CCCCEEEEecchHHHHHHHHHHHhhcccc-eEEEEccHHHHHhhcccCCchheEEEeCC
Confidence 79999999999999999996 99999999999999999999999999975 99999998874432 1478999999854
Q ss_pred --CCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 276 --YIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 276 --Yi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
|-.. +|.-+. +. -..+++..++.|+|||.
T Consensus 98 DPWpK~-----------rH~krR-l~--------~~~fl~~~~~~L~~gG~ 128 (195)
T PF02390_consen 98 DPWPKK-----------RHHKRR-LV--------NPEFLELLARVLKPGGE 128 (195)
T ss_dssp ----SG-----------GGGGGS-TT--------SHHHHHHHHHHEEEEEE
T ss_pred CCCccc-----------chhhhh-cC--------CchHHHHHHHHcCCCCE
Confidence 3221 111111 11 12678888899999984
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.7e-08 Score=94.85 Aligned_cols=142 Identities=20% Similarity=0.316 Sum_probs=101.8
Q ss_pred CCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCC
Q 020573 167 EGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQ 246 (324)
Q Consensus 167 ~~vliPrp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~ 246 (324)
.|.+........++-.++. ..++.+|||+|+|.|.-+..++......+.|+++|+++.-+...+.|+++.|+.
T Consensus 64 ~G~~~vQd~sS~l~~~~L~-------~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~ 136 (283)
T PF01189_consen 64 NGLFYVQDESSQLVALALD-------PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVF 136 (283)
T ss_dssp TTSEEEHHHHHHHHHHHHT-------TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-S
T ss_pred CCcEEeccccccccccccc-------ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCc
Confidence 3444444455555554443 235678999999999999999998866789999999999999999999999987
Q ss_pred CcEEEEEccccccccc-CCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcH----HHHHHHHHHHhccc--
Q 020573 247 DIIEIRQGSWFGKLKD-VEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGL----DYLLHLCNGTASML-- 319 (324)
Q Consensus 247 ~rv~~~~gD~~~~l~~-~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl----~~~~~il~~a~~~L-- 319 (324)
+ +.....|....... ....||.|+.++|....+.+ +..|.....-....+ ..-+++++.|.+++
T Consensus 137 ~-v~~~~~D~~~~~~~~~~~~fd~VlvDaPCSg~G~i--------~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~ 207 (283)
T PF01189_consen 137 N-VIVINADARKLDPKKPESKFDRVLVDAPCSGLGTI--------RRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNI 207 (283)
T ss_dssp S-EEEEESHHHHHHHHHHTTTEEEEEEECSCCCGGGT--------TTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHH
T ss_pred e-EEEEeeccccccccccccccchhhcCCCccchhhh--------hhccchhhcccccccchHHHHHHHHHHHHHHhhcc
Confidence 6 88888887664322 12369999999999876543 233333322122222 23368999999999
Q ss_pred --CCCCC
Q 020573 320 --KPDKW 324 (324)
Q Consensus 320 --kpgG~ 324 (324)
||||+
T Consensus 208 ~~k~gG~ 214 (283)
T PF01189_consen 208 DFKPGGR 214 (283)
T ss_dssp HBEEEEE
T ss_pred cccCCCe
Confidence 99984
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.81 E-value=5.3e-08 Score=87.44 Aligned_cols=115 Identities=16% Similarity=0.252 Sum_probs=93.4
Q ss_pred chHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEE
Q 020573 174 PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQ 253 (324)
Q Consensus 174 p~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~ 253 (324)
|+--.+++.+.+.+ .++++||+|+=+|+-+++.|..++++++|+++|+++++.+++.+-.+..|+..+|.+++
T Consensus 59 ~d~g~fl~~li~~~-------~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~ 131 (237)
T KOG1663|consen 59 PDKGQFLQMLIRLL-------NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIE 131 (237)
T ss_pred hHHHHHHHHHHHHh-------CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeee
Confidence 34445666666655 46799999999999999999999889999999999999999999999999999999999
Q ss_pred cccccccccC-----CCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 254 GSWFGKLKDV-----EGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 254 gD~~~~l~~~-----~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
|+..+.+.++ .+.||+++.+ ... +.|-...+++.++||+||+
T Consensus 132 g~a~esLd~l~~~~~~~tfDfaFvD----------adK-------------------~nY~~y~e~~l~Llr~GGv 178 (237)
T KOG1663|consen 132 GPALESLDELLADGESGTFDFAFVD----------ADK-------------------DNYSNYYERLLRLLRVGGV 178 (237)
T ss_pred cchhhhHHHHHhcCCCCceeEEEEc----------cch-------------------HHHHHHHHHHHhhcccccE
Confidence 9998765432 4689999983 000 1223577888899999995
|
|
| >COG3129 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.7e-08 Score=90.39 Aligned_cols=117 Identities=18% Similarity=0.304 Sum_probs=88.5
Q ss_pred eeeeCCccccc-chHHHHHHHHHHHhhhcCCCC--CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHH
Q 020573 163 LSVEEGVFIPR-PETELMVDLVSDVLVRDNDGL--RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFN 239 (324)
Q Consensus 163 ~~v~~~vliPr-p~te~lve~l~~~l~~~~~~~--~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N 239 (324)
..+.++.+.|- |...-++..+.+++....... +..++||+|+|.-||--.+..+- -+++.+|.|+++.+++.|+.|
T Consensus 43 wdiPeg~LCPpvPgRAdYih~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~e-YgwrfvGseid~~sl~sA~~i 121 (292)
T COG3129 43 WDIPEGFLCPPVPGRADYIHHLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHE-YGWRFVGSEIDSQSLSSAKAI 121 (292)
T ss_pred ecCCCCCcCCCCCChhHHHHHHHHHHHhcCCCCCcCceEEEeeccCccccccccccee-ecceeecCccCHHHHHHHHHH
Confidence 45677888874 777778888888774322222 44589999999999887666542 468999999999999999999
Q ss_pred HHHc-CCCCcEEEEEcc----cccccccCCCCeeEEEEcCCCCCCC
Q 020573 240 AQRY-GLQDIIEIRQGS----WFGKLKDVEGKLSGVVSNPPYIPSD 280 (324)
Q Consensus 240 ~~~~-gl~~rv~~~~gD----~~~~l~~~~~~fDlIVsNPPYi~~~ 280 (324)
+..| +++..+++.... .|..+....++||+++|||||+.+.
T Consensus 122 i~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd~tlCNPPFh~s~ 167 (292)
T COG3129 122 ISANPGLERAIRLRRQKDSDAIFNGIIGKNERYDATLCNPPFHDSA 167 (292)
T ss_pred HHcCcchhhheeEEeccCccccccccccccceeeeEecCCCcchhH
Confidence 9998 888778876542 3333433357999999999998764
|
|
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.7e-08 Score=88.67 Aligned_cols=69 Identities=20% Similarity=0.273 Sum_probs=58.0
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccccc-CCCCeeEEEEc
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKD-VEGKLSGVVSN 273 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~-~~~~fDlIVsN 273 (324)
++.+|||||||.|.+...|.+. .+..++|+|++++.+..+.++ | +.++++|+.+.+.. .+++||+||.+
T Consensus 13 pgsrVLDLGCGdG~LL~~L~~~--k~v~g~GvEid~~~v~~cv~r----G----v~Viq~Dld~gL~~f~d~sFD~VIls 82 (193)
T PF07021_consen 13 PGSRVLDLGCGDGELLAYLKDE--KQVDGYGVEIDPDNVAACVAR----G----VSVIQGDLDEGLADFPDQSFDYVILS 82 (193)
T ss_pred CCCEEEecCCCchHHHHHHHHh--cCCeEEEEecCHHHHHHHHHc----C----CCEEECCHHHhHhhCCCCCccEEehH
Confidence 4679999999999999999886 579999999999988776654 3 77999999887753 36799999985
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.5e-08 Score=88.15 Aligned_cols=72 Identities=13% Similarity=0.107 Sum_probs=56.6
Q ss_pred CCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc-cCCCCeeEEEEcC
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK-DVEGKLSGVVSNP 274 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~-~~~~~fDlIVsNP 274 (324)
+.+|||+|||+|.++..+++.. ...++|+|+++++++.|+++ +++++++|+.+.+. ...++||+|++|.
T Consensus 14 ~~~iLDiGcG~G~~~~~l~~~~--~~~~~giD~s~~~i~~a~~~--------~~~~~~~d~~~~l~~~~~~sfD~Vi~~~ 83 (194)
T TIGR02081 14 GSRVLDLGCGDGELLALLRDEK--QVRGYGIEIDQDGVLACVAR--------GVNVIQGDLDEGLEAFPDKSFDYVILSQ 83 (194)
T ss_pred CCEEEEeCCCCCHHHHHHHhcc--CCcEEEEeCCHHHHHHHHHc--------CCeEEEEEhhhcccccCCCCcCEEEEhh
Confidence 5689999999999999988753 46889999999999888642 36788888865332 2246899999997
Q ss_pred CCC
Q 020573 275 PYI 277 (324)
Q Consensus 275 PYi 277 (324)
.+.
T Consensus 84 ~l~ 86 (194)
T TIGR02081 84 TLQ 86 (194)
T ss_pred HhH
Confidence 653
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=98.77 E-value=9e-08 Score=91.88 Aligned_cols=79 Identities=11% Similarity=0.129 Sum_probs=66.3
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcC---CCCcEEEEEcccccccccCCCCeeEEE
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYG---LQDIIEIRQGSWFGKLKDVEGKLSGVV 271 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~g---l~~rv~~~~gD~~~~l~~~~~~fDlIV 271 (324)
.+++||.+|+|.|..+..+.+.. +..+|+.||++++.+++|+++...++ -.+|++++.+|..+.+....++||+|+
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~-~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi 181 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHK-TVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVII 181 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEE
Confidence 45689999999999999888863 55789999999999999999875432 246899999999987765567899999
Q ss_pred EcC
Q 020573 272 SNP 274 (324)
Q Consensus 272 sNP 274 (324)
.+.
T Consensus 182 ~D~ 184 (336)
T PLN02823 182 GDL 184 (336)
T ss_pred ecC
Confidence 985
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=4.4e-08 Score=81.69 Aligned_cols=70 Identities=20% Similarity=0.185 Sum_probs=57.9
Q ss_pred CCCeEEEEcCCccH-HHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEE-
Q 020573 195 RDGFWVDLGTGSGA-IAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVS- 272 (324)
Q Consensus 195 ~~~~VLDLGcGsG~-iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVs- 272 (324)
++.+++|+|||+|. ++..|++. +..|+|+|+++.+++.|+++ .++++.+|+|++-..+-+.+|+|.+
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~~---G~~ViaIDi~~~aV~~a~~~--------~~~~v~dDlf~p~~~~y~~a~liysi 84 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKES---GFDVIVIDINEKAVEKAKKL--------GLNAFVDDLFNPNLEIYKNAKLIYSI 84 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHHC---CCEEEEEECCHHHHHHHHHh--------CCeEEECcCCCCCHHHHhcCCEEEEe
Confidence 45689999999996 88888864 47999999999999888776 2789999999976655678999988
Q ss_pred cCC
Q 020573 273 NPP 275 (324)
Q Consensus 273 NPP 275 (324)
+||
T Consensus 85 rpp 87 (134)
T PRK04148 85 RPP 87 (134)
T ss_pred CCC
Confidence 444
|
|
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.76 E-value=5.5e-08 Score=88.28 Aligned_cols=103 Identities=11% Similarity=-0.037 Sum_probs=74.4
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH------H-----cCCCCcEEEEEcccccccc--
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ------R-----YGLQDIIEIRQGSWFGKLK-- 261 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~------~-----~gl~~rv~~~~gD~~~~l~-- 261 (324)
++.+||++|||.|.-++.||.. +.+|+|+|+|+.|++.+.+... . .--..+++++++|+|+.-.
T Consensus 43 ~~~rvLvPgCGkg~D~~~LA~~---G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~ 119 (226)
T PRK13256 43 DSSVCLIPMCGCSIDMLFFLSK---GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIA 119 (226)
T ss_pred CCCeEEEeCCCChHHHHHHHhC---CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccc
Confidence 4579999999999999999996 4689999999999998865210 0 0012359999999998532
Q ss_pred cCCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 262 DVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 262 ~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
...++||+|+- ...+..++++.+ .++++...+.|+|||.
T Consensus 120 ~~~~~fD~VyD------ra~~~Alpp~~R------------------~~Y~~~l~~lL~pgg~ 158 (226)
T PRK13256 120 NNLPVFDIWYD------RGAYIALPNDLR------------------TNYAKMMLEVCSNNTQ 158 (226)
T ss_pred cccCCcCeeee------ehhHhcCCHHHH------------------HHHHHHHHHHhCCCcE
Confidence 22368999764 223334444443 3678888999999984
|
|
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=98.75 E-value=2e-08 Score=90.77 Aligned_cols=103 Identities=24% Similarity=0.246 Sum_probs=74.4
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH-HHHHcC----------CCCcEEEEEcccccccccC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF-NAQRYG----------LQDIIEIRQGSWFGKLKDV 263 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~-N~~~~g----------l~~rv~~~~gD~~~~l~~~ 263 (324)
.+.+||++|||.|.-...||.+ +.+|+|+|+|+.|++.|.+ |..... -..+|+++++|+|+.-...
T Consensus 37 ~~~rvLvPgCG~g~D~~~La~~---G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~ 113 (218)
T PF05724_consen 37 PGGRVLVPGCGKGYDMLWLAEQ---GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPED 113 (218)
T ss_dssp TSEEEEETTTTTSCHHHHHHHT---TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSC
T ss_pred CCCeEEEeCCCChHHHHHHHHC---CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhh
Confidence 4569999999999999999986 4799999999999999843 221010 1236899999999854443
Q ss_pred CCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 264 EGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 264 ~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
.++||+|+= ...+..++++.+. ++.+...++|+|||.
T Consensus 114 ~g~fD~iyD------r~~l~Alpp~~R~------------------~Ya~~l~~ll~p~g~ 150 (218)
T PF05724_consen 114 VGKFDLIYD------RTFLCALPPEMRE------------------RYAQQLASLLKPGGR 150 (218)
T ss_dssp HHSEEEEEE------CSSTTTS-GGGHH------------------HHHHHHHHCEEEEEE
T ss_pred cCCceEEEE------ecccccCCHHHHH------------------HHHHHHHHHhCCCCc
Confidence 468999985 3445566665533 678888999999984
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=3.3e-08 Score=93.15 Aligned_cols=95 Identities=27% Similarity=0.365 Sum_probs=74.8
Q ss_pred HHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccc
Q 020573 178 LMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWF 257 (324)
Q Consensus 178 ~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~ 257 (324)
.|++.+++.+ ...+++.++|.+||.|..+..+++.++++++|+|+|.+++|++.|++++.. .++++++++|+.
T Consensus 6 Vll~Evl~~L----~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~---~~ri~~i~~~f~ 78 (296)
T PRK00050 6 VLLDEVVDAL----AIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP---FGRFTLVHGNFS 78 (296)
T ss_pred ccHHHHHHhh----CCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc---CCcEEEEeCCHH
Confidence 4566666665 223467999999999999999999875578999999999999999998765 367999999997
Q ss_pred cccccCC---CCeeEEEEcCCCCCC
Q 020573 258 GKLKDVE---GKLSGVVSNPPYIPS 279 (324)
Q Consensus 258 ~~l~~~~---~~fDlIVsNPPYi~~ 279 (324)
+...... .++|+|++|.-+...
T Consensus 79 ~l~~~l~~~~~~vDgIl~DLGvSs~ 103 (296)
T PRK00050 79 NLKEVLAEGLGKVDGILLDLGVSSP 103 (296)
T ss_pred HHHHHHHcCCCccCEEEECCCcccc
Confidence 6432222 279999999876543
|
|
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=98.71 E-value=7.8e-08 Score=90.45 Aligned_cols=80 Identities=23% Similarity=0.311 Sum_probs=68.6
Q ss_pred cCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeE
Q 020573 190 DNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSG 269 (324)
Q Consensus 190 ~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDl 269 (324)
+..+..++.|+|+|||||.++...|+. ...+|++||.| +|.+.|++-++.|.+.+||.++.|...+. + +.++.|+
T Consensus 172 N~sDF~~kiVlDVGaGSGILS~FAaqA--GA~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdi-e-LPEk~Dv 246 (517)
T KOG1500|consen 172 NHSDFQDKIVLDVGAGSGILSFFAAQA--GAKKVYAVEAS-EMAQYARKLVASNNLADRITVIPGKIEDI-E-LPEKVDV 246 (517)
T ss_pred cccccCCcEEEEecCCccHHHHHHHHh--CcceEEEEehh-HHHHHHHHHHhcCCccceEEEccCccccc-c-CchhccE
Confidence 334567889999999999999999987 46899999997 68899999999999999999999998763 2 3479999
Q ss_pred EEEcC
Q 020573 270 VVSNP 274 (324)
Q Consensus 270 IVsNP 274 (324)
||+-|
T Consensus 247 iISEP 251 (517)
T KOG1500|consen 247 IISEP 251 (517)
T ss_pred EEecc
Confidence 99965
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.66 E-value=7.5e-09 Score=92.72 Aligned_cols=94 Identities=23% Similarity=0.241 Sum_probs=67.5
Q ss_pred CCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc-cCCCCeeEEEEcC
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK-DVEGKLSGVVSNP 274 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~-~~~~~fDlIVsNP 274 (324)
-.++||||||||..+..+-... .+++|||||.+|++.|.+. |+-+ .+.+++....+. .-..+||+|++
T Consensus 126 F~~~lDLGCGTGL~G~~lR~~a---~~ltGvDiS~nMl~kA~eK----g~YD--~L~~Aea~~Fl~~~~~er~DLi~A-- 194 (287)
T COG4976 126 FRRMLDLGCGTGLTGEALRDMA---DRLTGVDISENMLAKAHEK----GLYD--TLYVAEAVLFLEDLTQERFDLIVA-- 194 (287)
T ss_pred cceeeecccCcCcccHhHHHHH---hhccCCchhHHHHHHHHhc----cchH--HHHHHHHHHHhhhccCCcccchhh--
Confidence 3589999999999999987764 6899999999999998764 2221 222333222222 11368999998
Q ss_pred CCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 275 PYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
.+|.-| |..+..++..+...|+|||.
T Consensus 195 ------------aDVl~Y------------lG~Le~~~~~aa~~L~~gGl 220 (287)
T COG4976 195 ------------ADVLPY------------LGALEGLFAGAAGLLAPGGL 220 (287)
T ss_pred ------------hhHHHh------------hcchhhHHHHHHHhcCCCce
Confidence 455444 44566788999999999994
|
|
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.2e-07 Score=84.74 Aligned_cols=92 Identities=26% Similarity=0.268 Sum_probs=71.8
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNP 274 (324)
...+|+|+|+|+|.++..+++++ |+.+++..|+ |+.++.+++ .+||+++.||+++.++ . +|+++..
T Consensus 100 ~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~v~~~~~~-------~~rv~~~~gd~f~~~P---~-~D~~~l~- 165 (241)
T PF00891_consen 100 GFKTVVDVGGGSGHFAIALARAY-PNLRATVFDL-PEVIEQAKE-------ADRVEFVPGDFFDPLP---V-ADVYLLR- 165 (241)
T ss_dssp TSSEEEEET-TTSHHHHHHHHHS-TTSEEEEEE--HHHHCCHHH-------TTTEEEEES-TTTCCS---S-ESEEEEE-
T ss_pred CccEEEeccCcchHHHHHHHHHC-CCCcceeecc-Hhhhhcccc-------ccccccccccHHhhhc---c-ccceeee-
Confidence 44689999999999999999997 9999999999 889988887 5789999999997654 3 9999882
Q ss_pred CCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCC--C
Q 020573 275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPD--K 323 (324)
Q Consensus 275 PYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~Lkpg--G 323 (324)
.|.+.-+ -+....|++++++.|+|| |
T Consensus 166 -------------~vLh~~~----------d~~~~~iL~~~~~al~pg~~g 193 (241)
T PF00891_consen 166 -------------HVLHDWS----------DEDCVKILRNAAAALKPGKDG 193 (241)
T ss_dssp -------------SSGGGS-----------HHHHHHHHHHHHHHSEECTTE
T ss_pred -------------hhhhhcc----------hHHHHHHHHHHHHHhCCCCCC
Confidence 2222111 244568999999999998 7
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.8e-07 Score=86.23 Aligned_cols=81 Identities=19% Similarity=0.153 Sum_probs=65.4
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEc
Q 020573 194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN 273 (324)
Q Consensus 194 ~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsN 273 (324)
.++..|+|+|+|.|+++..|++.. .+|+++|+++..++..++... ..++++++++|+.+.-.....+++.||+|
T Consensus 29 ~~~d~VlEIGpG~GaLT~~Ll~~~---~~v~aiEiD~~l~~~L~~~~~---~~~n~~vi~~DaLk~d~~~l~~~~~vVaN 102 (259)
T COG0030 29 SPGDNVLEIGPGLGALTEPLLERA---ARVTAIEIDRRLAEVLKERFA---PYDNLTVINGDALKFDFPSLAQPYKVVAN 102 (259)
T ss_pred CCCCeEEEECCCCCHHHHHHHhhc---CeEEEEEeCHHHHHHHHHhcc---cccceEEEeCchhcCcchhhcCCCEEEEc
Confidence 346799999999999999999974 689999999999999888765 33569999999987422100168999999
Q ss_pred CCCCCCC
Q 020573 274 PPYIPSD 280 (324)
Q Consensus 274 PPYi~~~ 280 (324)
.||.-+.
T Consensus 103 lPY~Iss 109 (259)
T COG0030 103 LPYNISS 109 (259)
T ss_pred CCCcccH
Confidence 9997654
|
|
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.5e-07 Score=85.08 Aligned_cols=49 Identities=24% Similarity=0.380 Sum_probs=43.5
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHc
Q 020573 194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRY 243 (324)
Q Consensus 194 ~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~ 243 (324)
..+..+||+||-+|.+++.+|+.|+ ...|+|+||++..+..|++|++..
T Consensus 57 f~~~~~LDIGCNsG~lt~~iak~F~-~r~iLGvDID~~LI~~Ark~~r~~ 105 (288)
T KOG2899|consen 57 FEPKQALDIGCNSGFLTLSIAKDFG-PRRILGVDIDPVLIQRARKEIRFP 105 (288)
T ss_pred cCcceeEeccCCcchhHHHHHHhhc-cceeeEeeccHHHHHHHHHhcccc
Confidence 3467899999999999999999985 468999999999999999998643
|
|
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=3.2e-07 Score=83.94 Aligned_cols=81 Identities=25% Similarity=0.268 Sum_probs=69.9
Q ss_pred eEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHc------C--CCCcEEEEEcccccccccCCCCeeE
Q 020573 198 FWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRY------G--LQDIIEIRQGSWFGKLKDVEGKLSG 269 (324)
Q Consensus 198 ~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~------g--l~~rv~~~~gD~~~~l~~~~~~fDl 269 (324)
+|||+.+|+|..++.++.. +++|+++|.++.+..+.++|+++. + +..+++++++|..+.+......||+
T Consensus 91 ~VLD~TAGlG~Da~~las~---G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~~~fDV 167 (250)
T PRK10742 91 DVVDATAGLGRDAFVLASV---GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQV 167 (250)
T ss_pred EEEECCCCccHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCCCCCcE
Confidence 8999999999999999986 477999999999999999999985 2 2357999999998887655558999
Q ss_pred EEEcCCCCCCCC
Q 020573 270 VVSNPPYIPSDD 281 (324)
Q Consensus 270 IVsNPPYi~~~~ 281 (324)
|..+|||-....
T Consensus 168 VYlDPMfp~~~k 179 (250)
T PRK10742 168 VYLDPMFPHKQK 179 (250)
T ss_pred EEECCCCCCCcc
Confidence 999999976543
|
|
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.5e-07 Score=85.54 Aligned_cols=106 Identities=19% Similarity=0.270 Sum_probs=85.7
Q ss_pred CeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccC--CCCeeEEEEcC
Q 020573 197 GFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDV--EGKLSGVVSNP 274 (324)
Q Consensus 197 ~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~--~~~fDlIVsNP 274 (324)
..+||||||.|.+.+.+|++. |+..++|||+....+..|.+.+.+.++. ++.++++|+.+.+..+ .+++|-|..|-
T Consensus 50 pi~lEIGfG~G~~l~~~A~~n-P~~nfiGiEi~~~~v~~~l~k~~~~~l~-Nlri~~~DA~~~l~~~~~~~sl~~I~i~F 127 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKN-PEKNFLGIEIRVPGVAKALKKIKELGLK-NLRLLCGDAVEVLDYLIPDGSLDKIYINF 127 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHC-CCCCEEEEEEehHHHHHHHHHHHHcCCC-cEEEEcCCHHHHHHhcCCCCCeeEEEEEC
Confidence 479999999999999999996 9999999999999999999999999997 5999999998765443 35899999985
Q ss_pred C--CCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 275 P--YIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 275 P--Yi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
| +... +|+-+.- ....+++...+.|+|||.
T Consensus 128 PDPWpKk-----------RH~KRRl---------~~~~fl~~~a~~Lk~gG~ 159 (227)
T COG0220 128 PDPWPKK-----------RHHKRRL---------TQPEFLKLYARKLKPGGV 159 (227)
T ss_pred CCCCCCc-----------ccccccc---------CCHHHHHHHHHHccCCCE
Confidence 4 4322 2322211 234789999999999994
|
|
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.60 E-value=3.2e-07 Score=86.00 Aligned_cols=102 Identities=19% Similarity=0.153 Sum_probs=68.9
Q ss_pred CCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEE
Q 020573 192 DGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVV 271 (324)
Q Consensus 192 ~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIV 271 (324)
....+++|||+|||+|+.+..++.+ ....|+|+|-+...+...+--.+..|...++.++ ....+.++. .+.||+|+
T Consensus 112 ~~L~gk~VLDIGC~nGY~~frM~~~--GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~l-plgvE~Lp~-~~~FDtVF 187 (315)
T PF08003_consen 112 PDLKGKRVLDIGCNNGYYSFRMLGR--GAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFEL-PLGVEDLPN-LGAFDTVF 187 (315)
T ss_pred CCcCCCEEEEecCCCcHHHHHHhhc--CCCEEEEECCChHHHHHHHHHHHHhCCCccEEEc-Ccchhhccc-cCCcCEEE
Confidence 3567889999999999999999987 3468999998877665544333334443333333 223344554 57899999
Q ss_pred EcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCC
Q 020573 272 SNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDK 323 (324)
Q Consensus 272 sNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG 323 (324)
| -.|..|...- + ..+.+..+.|++||
T Consensus 188 ~--------------MGVLYHrr~P--------l----~~L~~Lk~~L~~gG 213 (315)
T PF08003_consen 188 S--------------MGVLYHRRSP--------L----DHLKQLKDSLRPGG 213 (315)
T ss_pred E--------------eeehhccCCH--------H----HHHHHHHHhhCCCC
Confidence 9 4565663321 2 45677789999998
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.59 E-value=2.8e-07 Score=84.64 Aligned_cols=83 Identities=20% Similarity=0.344 Sum_probs=70.7
Q ss_pred CCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEE
Q 020573 192 DGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVV 271 (324)
Q Consensus 192 ~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIV 271 (324)
...++..||++|-|||.++..+... +++|+|+|+++.+++...+.++....+++.+++.||+++.- ...||++|
T Consensus 55 ~~k~tD~VLEvGPGTGnLT~~lLe~---~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d---~P~fd~cV 128 (315)
T KOG0820|consen 55 DLKPTDVVLEVGPGTGNLTVKLLEA---GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTD---LPRFDGCV 128 (315)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHh---cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCC---Ccccceee
Confidence 4456789999999999999999986 47999999999999999988876666789999999998742 24799999
Q ss_pred EcCCCCCCC
Q 020573 272 SNPPYIPSD 280 (324)
Q Consensus 272 sNPPYi~~~ 280 (324)
+|-||--++
T Consensus 129 sNlPyqISS 137 (315)
T KOG0820|consen 129 SNLPYQISS 137 (315)
T ss_pred ccCCccccC
Confidence 999996554
|
|
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=98.57 E-value=5.1e-07 Score=79.55 Aligned_cols=94 Identities=17% Similarity=0.094 Sum_probs=69.8
Q ss_pred hHHHHHHHHHHHhhhcCCC-CCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEE
Q 020573 175 ETELMVDLVSDVLVRDNDG-LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQ 253 (324)
Q Consensus 175 ~te~lve~l~~~l~~~~~~-~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~ 253 (324)
..+.+..++++-+...... ....+++|+|||.|.-++.+|-.+ |+.+|+.+|.+..-+...+.-+...|++| +++++
T Consensus 27 ~~~~~~~Hi~DSL~~~~~~~~~~~~~lDiGSGaGfPGipLaI~~-p~~~~~LvEs~~KK~~FL~~~~~~L~L~n-v~v~~ 104 (184)
T PF02527_consen 27 PEEIWERHILDSLALLPFLPDFGKKVLDIGSGAGFPGIPLAIAR-PDLQVTLVESVGKKVAFLKEVVRELGLSN-VEVIN 104 (184)
T ss_dssp HHHHHHHHHHHHHGGGGCS-CCCSEEEEETSTTTTTHHHHHHH--TTSEEEEEESSHHHHHHHHHHHHHHT-SS-EEEEE
T ss_pred HHHHHHHHHHHHHHhhhhhccCCceEEecCCCCCChhHHHHHhC-CCCcEEEEeCCchHHHHHHHHHHHhCCCC-EEEEE
Confidence 3445555666544211111 122279999999999999999986 89999999999999999999999999975 99999
Q ss_pred cccccccccCCCCeeEEEE
Q 020573 254 GSWFGKLKDVEGKLSGVVS 272 (324)
Q Consensus 254 gD~~~~l~~~~~~fDlIVs 272 (324)
+...+ .....+||+|++
T Consensus 105 ~R~E~--~~~~~~fd~v~a 121 (184)
T PF02527_consen 105 GRAEE--PEYRESFDVVTA 121 (184)
T ss_dssp S-HHH--TTTTT-EEEEEE
T ss_pred eeecc--cccCCCccEEEe
Confidence 99887 223479999999
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.56 E-value=3.8e-08 Score=88.45 Aligned_cols=106 Identities=22% Similarity=0.246 Sum_probs=79.5
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCC-CCcEEEEEcccccccccC-CCCeeEEE
Q 020573 194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGL-QDIIEIRQGSWFGKLKDV-EGKLSGVV 271 (324)
Q Consensus 194 ~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl-~~rv~~~~gD~~~~l~~~-~~~fDlIV 271 (324)
..+.+|||-|+|-|+.++..+++ ...+|+.+|.+++.+++|.-|==..++ +.+++++.||..+..+.+ +.+||+||
T Consensus 133 ~~G~rVLDtC~GLGYtAi~a~~r--GA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIi 210 (287)
T COG2521 133 KRGERVLDTCTGLGYTAIEALER--GAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAII 210 (287)
T ss_pred ccCCEeeeeccCccHHHHHHHHc--CCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEe
Confidence 45789999999999999999986 334999999999999999887432222 225899999999877655 45799999
Q ss_pred EcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 272 SNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 272 sNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
-+||-.+-.. .|. -.+|.++.++.|||||.
T Consensus 211 HDPPRfS~Ag--eLY---------------------seefY~El~RiLkrgGr 240 (287)
T COG2521 211 HDPPRFSLAG--ELY---------------------SEEFYRELYRILKRGGR 240 (287)
T ss_pred eCCCccchhh--hHh---------------------HHHHHHHHHHHcCcCCc
Confidence 9999643221 111 12455666899999983
|
|
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.56 E-value=6.2e-08 Score=87.52 Aligned_cols=95 Identities=20% Similarity=0.171 Sum_probs=66.1
Q ss_pred eEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcCCCC
Q 020573 198 FWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYI 277 (324)
Q Consensus 198 ~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNPPYi 277 (324)
.++|+|||+|.-++.+|..+ .+|+|+|+|+.|+++|++.-...-......+...+..+ +...++++|+|++
T Consensus 36 ~a~DvG~G~Gqa~~~iae~~---k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~-L~g~e~SVDlI~~----- 106 (261)
T KOG3010|consen 36 LAWDVGTGNGQAARGIAEHY---KEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVD-LLGGEESVDLITA----- 106 (261)
T ss_pred eEEEeccCCCcchHHHHHhh---hhheeecCCHHHHHHhhcCCCcccccCCcccccccccc-ccCCCcceeeehh-----
Confidence 79999999998888888886 68999999999999988643211111112333333333 2222579999998
Q ss_pred CCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCC
Q 020573 278 PSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDK 323 (324)
Q Consensus 278 ~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG 323 (324)
.+..+| -++.++.+.+.++||+.|
T Consensus 107 ---------Aqa~HW-------------Fdle~fy~~~~rvLRk~G 130 (261)
T KOG3010|consen 107 ---------AQAVHW-------------FDLERFYKEAYRVLRKDG 130 (261)
T ss_pred ---------hhhHHh-------------hchHHHHHHHHHHcCCCC
Confidence 232232 245689999999999988
|
|
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.52 E-value=3.1e-07 Score=81.30 Aligned_cols=100 Identities=18% Similarity=0.119 Sum_probs=73.1
Q ss_pred CCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEE-EEEcccccccccCCCCeeEEEEcC
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIE-IRQGSWFGKLKDVEGKLSGVVSNP 274 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~-~~~gD~~~~l~~~~~~fDlIVsNP 274 (324)
...+|++|||+|..--..-. .|...|+++|-++.|-++|.+.++.+... ++. |+.++..+...-.++++|.||+-
T Consensus 77 K~~vLEvgcGtG~Nfkfy~~--~p~~svt~lDpn~~mee~~~ks~~E~k~~-~~~~fvva~ge~l~~l~d~s~DtVV~T- 152 (252)
T KOG4300|consen 77 KGDVLEVGCGTGANFKFYPW--KPINSVTCLDPNEKMEEIADKSAAEKKPL-QVERFVVADGENLPQLADGSYDTVVCT- 152 (252)
T ss_pred ccceEEecccCCCCcccccC--CCCceEEEeCCcHHHHHHHHHHHhhccCc-ceEEEEeechhcCcccccCCeeeEEEE-
Confidence 34689999999987655433 27889999999999999999999887443 466 88888766322236899999982
Q ss_pred CCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 275 PYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
-|. -. .+..++.+++..++|+|||+
T Consensus 153 -------------lvL--------CS----ve~~~k~L~e~~rlLRpgG~ 177 (252)
T KOG4300|consen 153 -------------LVL--------CS----VEDPVKQLNEVRRLLRPGGR 177 (252)
T ss_pred -------------EEE--------ec----cCCHHHHHHHHHHhcCCCcE
Confidence 110 00 12234678888999999994
|
|
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.4e-06 Score=81.67 Aligned_cols=104 Identities=21% Similarity=0.272 Sum_probs=82.1
Q ss_pred CCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcC--C-CCcEEEEEcccccccccCCCCeeEEEE
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYG--L-QDIIEIRQGSWFGKLKDVEGKLSGVVS 272 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~g--l-~~rv~~~~gD~~~~l~~~~~~fDlIVs 272 (324)
.++||-+|-|.|..+..+.+.. +-.+++.||++++.+++|++-..... . ..|++++.+|..+.+.....+||+|+.
T Consensus 77 pk~VLiiGgGdG~tlRevlkh~-~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~ 155 (282)
T COG0421 77 PKRVLIIGGGDGGTLREVLKHL-PVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIV 155 (282)
T ss_pred CCeEEEECCCccHHHHHHHhcC-CcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEE
Confidence 3699999999999999999984 67899999999999999999875432 2 478999999999988765568999999
Q ss_pred cC--CCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 273 NP--PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 273 NP--PYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
|- | + -|.-+| +-..|++.+.+.|+++|+
T Consensus 156 D~tdp-~---------------gp~~~L--------ft~eFy~~~~~~L~~~Gi 185 (282)
T COG0421 156 DSTDP-V---------------GPAEAL--------FTEEFYEGCRRALKEDGI 185 (282)
T ss_pred cCCCC-C---------------Cccccc--------CCHHHHHHHHHhcCCCcE
Confidence 61 1 1 011111 123688999999999996
|
|
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=98.45 E-value=4.3e-07 Score=83.64 Aligned_cols=107 Identities=18% Similarity=0.181 Sum_probs=79.3
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCC---CCcEEEEEcccccccccCCC-CeeEE
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGL---QDIIEIRQGSWFGKLKDVEG-KLSGV 270 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl---~~rv~~~~gD~~~~l~~~~~-~fDlI 270 (324)
.+++||=+|-|.|..+..+.+.. +..+|+.||+++..++.|++....... .+|++++.+|....+....+ +||+|
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~-~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI 154 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHP-PVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI 154 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTST-T-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred CcCceEEEcCCChhhhhhhhhcC-CcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence 46799999999999999998863 467999999999999999998765322 46899999999887776556 89999
Q ss_pred EEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 271 VSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 271 VsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
+.+.+- +.... .. . .-+.+++.+.+.|+|||+
T Consensus 155 i~D~~d-p~~~~----~~--l---------------~t~ef~~~~~~~L~~~Gv 186 (246)
T PF01564_consen 155 IVDLTD-PDGPA----PN--L---------------FTREFYQLCKRRLKPDGV 186 (246)
T ss_dssp EEESSS-TTSCG----GG--G---------------SSHHHHHHHHHHEEEEEE
T ss_pred EEeCCC-CCCCc----cc--c---------------cCHHHHHHHHhhcCCCcE
Confidence 997653 21110 00 1 123688889999999985
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >KOG2912 consensus Predicted DNA methylase [Function unknown] | Back alignment and domain information |
|---|
Probab=98.42 E-value=7.8e-07 Score=83.19 Aligned_cols=141 Identities=18% Similarity=0.256 Sum_probs=99.6
Q ss_pred CeeeeeeCCccccc-chHHHHHHHHHHHhhhcCCCCCCCe--EEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHH
Q 020573 160 DLVLSVEEGVFIPR-PETELMVDLVSDVLVRDNDGLRDGF--WVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVA 236 (324)
Q Consensus 160 ~l~~~v~~~vliPr-p~te~lve~l~~~l~~~~~~~~~~~--VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~A 236 (324)
|+...+.++.++|+ |...-++.++.+++ ...+..++.. =+|+|+|.-||--.+.... -++..+++|+++..++.|
T Consensus 65 gl~veiP~grLcPtVPnR~nYihwI~DLL-ss~q~~k~~i~~GiDIgtgasci~~llg~rq-~n~~f~~teidd~s~~~a 142 (419)
T KOG2912|consen 65 GLSVEIPLGRLCPTVPNRLNYIHWIEDLL-SSQQSDKSTIRRGIDIGTGASCIYPLLGARQ-NNWYFLATEIDDMSFNYA 142 (419)
T ss_pred CceEecCccccCCCCccchhhHHHHHHHh-hcccCCCcceeeeeeccCchhhhHHhhhchh-ccceeeeeeccccccchh
Confidence 67788899999997 77777888888887 3332222222 4899999999887776553 568999999999999999
Q ss_pred HHHHHHcCCCCcEEEEEccccccc-----cc-CCCCeeEEEEcCCCCCCCCccc--chhhhhcccccccccCCC
Q 020573 237 AFNAQRYGLQDIIEIRQGSWFGKL-----KD-VEGKLSGVVSNPPYIPSDDISG--LQVEVGKHEPRLALDGGV 302 (324)
Q Consensus 237 r~N~~~~gl~~rv~~~~gD~~~~l-----~~-~~~~fDlIVsNPPYi~~~~~~~--l~~ev~~~eP~~aL~gg~ 302 (324)
..|+.++++++++.+++.+-.+.+ .. .+..||+..|||||-....-.. -...-++--|+.+..||.
T Consensus 143 ~snV~qn~lss~ikvV~~~~~ktll~d~~~~~~e~~ydFcMcNPPFfe~~~Ea~~n~~~s~~rtpp~~vc~gg~ 216 (419)
T KOG2912|consen 143 KSNVEQNNLSSLIKVVKVEPQKTLLMDALKEESEIIYDFCMCNPPFFENQLEAKGNNSRSPRRTPPSSVCTGGS 216 (419)
T ss_pred hccccccccccceeeEEecchhhcchhhhccCccceeeEEecCCchhhchhhhccccccCCCCCCcccccccch
Confidence 999999999998888876432211 11 1346999999999976522111 112223455666666664
|
|
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=98.41 E-value=2.3e-06 Score=76.74 Aligned_cols=72 Identities=35% Similarity=0.478 Sum_probs=57.4
Q ss_pred EEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEE
Q 020573 199 WVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVS 272 (324)
Q Consensus 199 VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVs 272 (324)
|+|+||--|++++.|.+. +.-.+|+++|+++..++.|++|++++|+.+++++..||-++.+.. .+..|.||.
T Consensus 1 vaDIGtDHgyLpi~L~~~-~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~-~e~~d~ivI 72 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKN-GKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKP-GEDVDTIVI 72 (205)
T ss_dssp EEEET-STTHHHHHHHHT-TSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--G-GG---EEEE
T ss_pred CceeccchhHHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCC-CCCCCEEEE
Confidence 689999999999999997 455689999999999999999999999999999999999887765 123787776
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.41 E-value=2.4e-06 Score=76.86 Aligned_cols=97 Identities=22% Similarity=0.127 Sum_probs=76.6
Q ss_pred ccchHHHHHHHHHHHhhhcCCCCC-CCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEE
Q 020573 172 PRPETELMVDLVSDVLVRDNDGLR-DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIE 250 (324)
Q Consensus 172 Prp~te~lve~l~~~l~~~~~~~~-~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~ 250 (324)
++...+++..++++.+........ +.+|+|+|+|.|.-++.+|-.+ |+.+|+-+|-..+-+...++-.+..+++| ++
T Consensus 43 ~~~~~e~~~rHilDSl~~~~~~~~~~~~~~DIGSGaGfPGipLAI~~-p~~~vtLles~~Kk~~FL~~~~~eL~L~n-v~ 120 (215)
T COG0357 43 IRDPEELWQRHILDSLVLLPYLDGKAKRVLDIGSGAGFPGIPLAIAF-PDLKVTLLESLGKKIAFLREVKKELGLEN-VE 120 (215)
T ss_pred CCCHHHHHHHHHHHHhhhhhcccccCCEEEEeCCCCCCchhhHHHhc-cCCcEEEEccCchHHHHHHHHHHHhCCCC-eE
Confidence 455667777777776521111112 5799999999999999999765 88999999999999999999999999976 99
Q ss_pred EEEcccccccccCCCC-eeEEEE
Q 020573 251 IRQGSWFGKLKDVEGK-LSGVVS 272 (324)
Q Consensus 251 ~~~gD~~~~l~~~~~~-fDlIVs 272 (324)
++++...+.-.. .+ ||+|++
T Consensus 121 i~~~RaE~~~~~--~~~~D~vts 141 (215)
T COG0357 121 IVHGRAEEFGQE--KKQYDVVTS 141 (215)
T ss_pred EehhhHhhcccc--cccCcEEEe
Confidence 999998774332 23 999999
|
|
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=98.35 E-value=2.5e-06 Score=79.14 Aligned_cols=91 Identities=22% Similarity=0.228 Sum_probs=69.5
Q ss_pred HHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccc
Q 020573 178 LMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWF 257 (324)
Q Consensus 178 ~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~ 257 (324)
.+++.+.+.+ ....+..|+|+|.|.|.++..+++.. .+|+++|+++..++..++... ...+++++.+|+.
T Consensus 17 ~~~~~Iv~~~----~~~~~~~VlEiGpG~G~lT~~L~~~~---~~v~~vE~d~~~~~~L~~~~~---~~~~~~vi~~D~l 86 (262)
T PF00398_consen 17 NIADKIVDAL----DLSEGDTVLEIGPGPGALTRELLKRG---KRVIAVEIDPDLAKHLKERFA---SNPNVEVINGDFL 86 (262)
T ss_dssp HHHHHHHHHH----TCGTTSEEEEESSTTSCCHHHHHHHS---SEEEEEESSHHHHHHHHHHCT---TCSSEEEEES-TT
T ss_pred HHHHHHHHhc----CCCCCCEEEEeCCCCccchhhHhccc---CcceeecCcHhHHHHHHHHhh---hcccceeeecchh
Confidence 4566666655 22356799999999999999999973 799999999999998887654 3457999999998
Q ss_pred cccccC--CCCeeEEEEcCCCCC
Q 020573 258 GKLKDV--EGKLSGVVSNPPYIP 278 (324)
Q Consensus 258 ~~l~~~--~~~fDlIVsNPPYi~ 278 (324)
+..... ......||+|.||.-
T Consensus 87 ~~~~~~~~~~~~~~vv~NlPy~i 109 (262)
T PF00398_consen 87 KWDLYDLLKNQPLLVVGNLPYNI 109 (262)
T ss_dssp TSCGGGHCSSSEEEEEEEETGTG
T ss_pred ccccHHhhcCCceEEEEEecccc
Confidence 743221 246779999999953
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.32 E-value=7.1e-06 Score=75.52 Aligned_cols=84 Identities=20% Similarity=0.262 Sum_probs=72.7
Q ss_pred CCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccC-CCCeeEE
Q 020573 192 DGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDV-EGKLSGV 270 (324)
Q Consensus 192 ~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~-~~~fDlI 270 (324)
+..++.+|++-|||||.++.++++..+|.++++..|....-.+.|++..+.+|+.+++++..-|.-..-... ...+|.|
T Consensus 102 ~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~ks~~aDaV 181 (314)
T KOG2915|consen 102 EIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLIKSLKADAV 181 (314)
T ss_pred cCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCccccccccceE
Confidence 445688999999999999999999999999999999999999999999999999999999998876432111 4689999
Q ss_pred EEcCC
Q 020573 271 VSNPP 275 (324)
Q Consensus 271 VsNPP 275 (324)
+.+-|
T Consensus 182 FLDlP 186 (314)
T KOG2915|consen 182 FLDLP 186 (314)
T ss_pred EEcCC
Confidence 99865
|
|
| >KOG2671 consensus Putative RNA methylase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.31 E-value=7.3e-07 Score=84.22 Aligned_cols=125 Identities=15% Similarity=0.177 Sum_probs=87.2
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHH-------HHHHHHHHcCCCCc-EEEEEcccccccccCCC
Q 020573 194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAA-------VAAFNAQRYGLQDI-IEIRQGSWFGKLKDVEG 265 (324)
Q Consensus 194 ~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~-------~Ar~N~~~~gl~~r-v~~~~gD~~~~l~~~~~ 265 (324)
.+++.|.|...|||.+.++.|.. ++.|+|.||+-.++. ..+.|.+++|..++ +.++.+|+..+.-....
T Consensus 207 ~pGdivyDPFVGTGslLvsaa~F---Ga~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~rsn~ 283 (421)
T KOG2671|consen 207 KPGDIVYDPFVGTGSLLVSAAHF---GAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLRSNL 283 (421)
T ss_pred CCCCEEecCccccCceeeehhhh---cceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchhhcc
Confidence 46789999999999999999884 489999999988887 35678888885543 57788888764322246
Q ss_pred CeeEEEEcCCCCCCCCcccch----------hhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 266 KLSGVVSNPPYIPSDDISGLQ----------VEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 266 ~fDlIVsNPPYi~~~~~~~l~----------~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
.||.|||+|||.-.......- ..-..|-|..... .=.+++-.++.-++++|..||.
T Consensus 284 ~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~y---sl~~~v~dll~fss~~L~~ggr 349 (421)
T KOG2671|consen 284 KFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQY---SLSSLVYDLLCFSSRRLVDGGR 349 (421)
T ss_pred eeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchh---HHHHHHhhHHHhhHhhhhcCce
Confidence 899999999997543322110 0111233322111 1145667889999999999984
|
|
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=98.31 E-value=2.9e-06 Score=81.34 Aligned_cols=106 Identities=16% Similarity=0.170 Sum_probs=70.0
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcC---------CCCcEEEEEcccccc-----c
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYG---------LQDIIEIRQGSWFGK-----L 260 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~g---------l~~rv~~~~gD~~~~-----l 260 (324)
++.+|||||||-|.-..-.... .-..++|+|++..+++.|++..+... ..=...++.+|.+.. +
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~--~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~ 139 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKA--KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKL 139 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHT--T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTS
T ss_pred CCCeEEEecCCCchhHHHHHhc--CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhc
Confidence 5679999999999877666664 34799999999999999999883321 111367888988753 1
Q ss_pred ccCCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 261 KDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 261 ~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
.....+||+|-+- +--|.++. --+-.+.+++.+.++|+|||+
T Consensus 140 ~~~~~~FDvVScQ------------------FalHY~Fe----se~~ar~~l~Nvs~~Lk~GG~ 181 (331)
T PF03291_consen 140 PPRSRKFDVVSCQ------------------FALHYAFE----SEEKARQFLKNVSSLLKPGGY 181 (331)
T ss_dssp SSTTS-EEEEEEE------------------S-GGGGGS----SHHHHHHHHHHHHHTEEEEEE
T ss_pred cccCCCcceeehH------------------HHHHHhcC----CHHHHHHHHHHHHHhcCCCCE
Confidence 2212589999882 11111111 134567899999999999995
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.6e-05 Score=72.38 Aligned_cols=82 Identities=23% Similarity=0.301 Sum_probs=52.1
Q ss_pred CCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccccc-CCCCeeEE
Q 020573 192 DGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKD-VEGKLSGV 270 (324)
Q Consensus 192 ~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~-~~~~fDlI 270 (324)
....+++||=+|=+ =.+++++|.. +...+|+.+|+++..++..++.+++.|+. ++.++.|+.++++. +.++||++
T Consensus 41 gdL~gk~il~lGDD-DLtSlA~al~-~~~~~I~VvDiDeRll~fI~~~a~~~gl~--i~~~~~DlR~~LP~~~~~~fD~f 116 (243)
T PF01861_consen 41 GDLEGKRILFLGDD-DLTSLALALT-GLPKRITVVDIDERLLDFINRVAEEEGLP--IEAVHYDLRDPLPEELRGKFDVF 116 (243)
T ss_dssp T-STT-EEEEES-T-T-HHHHHHHH-T--SEEEEE-S-HHHHHHHHHHHHHHT----EEEE---TTS---TTTSS-BSEE
T ss_pred CcccCCEEEEEcCC-cHHHHHHHhh-CCCCeEEEEEcCHHHHHHHHHHHHHcCCc--eEEEEecccccCCHHHhcCCCEE
Confidence 34567899988844 3556666654 35689999999999999999999999986 99999999998875 46899999
Q ss_pred EEcCCCC
Q 020573 271 VSNPPYI 277 (324)
Q Consensus 271 VsNPPYi 277 (324)
++||||-
T Consensus 117 ~TDPPyT 123 (243)
T PF01861_consen 117 FTDPPYT 123 (243)
T ss_dssp EE---SS
T ss_pred EeCCCCC
Confidence 9999996
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=98.23 E-value=1.3e-05 Score=71.39 Aligned_cols=102 Identities=15% Similarity=0.098 Sum_probs=75.0
Q ss_pred eEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccccc-------CCCCeeEE
Q 020573 198 FWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKD-------VEGKLSGV 270 (324)
Q Consensus 198 ~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~-------~~~~fDlI 270 (324)
+||++|||||--+..+|+++ |..+..-.|.++......+..+...++++-..-+.-|+.+.... ..+.||.|
T Consensus 28 ~vLEiaSGtGqHa~~FA~~l-P~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i 106 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQAL-PHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAI 106 (204)
T ss_pred eEEEEcCCccHHHHHHHHHC-CCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCccee
Confidence 59999999999999999998 88999999999999888888888877765333334444332111 13589999
Q ss_pred EEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 271 VSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 271 VsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
++- .+.+--| -.....+++.|.++|++||.
T Consensus 107 ~~~--------------N~lHI~p----------~~~~~~lf~~a~~~L~~gG~ 136 (204)
T PF06080_consen 107 FCI--------------NMLHISP----------WSAVEGLFAGAARLLKPGGL 136 (204)
T ss_pred eeh--------------hHHHhcC----------HHHHHHHHHHHHHhCCCCCE
Confidence 982 2222222 24556899999999999994
|
The function of this family is unknown. |
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.23 E-value=2.2e-06 Score=74.88 Aligned_cols=69 Identities=25% Similarity=0.263 Sum_probs=59.8
Q ss_pred CeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEE
Q 020573 197 GFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVS 272 (324)
Q Consensus 197 ~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVs 272 (324)
+.+.|||+|||.++...|+.. .+|++++.+|.-.++|.+|+...|..+ ++++.||..+.- . ...|+|+|
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~A---~rViAiE~dPk~a~~a~eN~~v~g~~n-~evv~gDA~~y~-f--e~ADvvic 102 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHAA---ERVIAIEKDPKRARLAEENLHVPGDVN-WEVVVGDARDYD-F--ENADVVIC 102 (252)
T ss_pred hceeeccCCcchHHHHHHhhh---ceEEEEecCcHHHHHhhhcCCCCCCcc-eEEEeccccccc-c--cccceeHH
Confidence 579999999999999998863 699999999999999999998888764 999999987632 1 46799988
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.21 E-value=5.2e-06 Score=84.06 Aligned_cols=107 Identities=17% Similarity=0.164 Sum_probs=81.0
Q ss_pred CCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccccc-CCCCeeEEEEcC
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKD-VEGKLSGVVSNP 274 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~-~~~~fDlIVsNP 274 (324)
...+||+|||.|-+.+.+|... |+..++|+|++...+..|.+.+.+.++.| +.++.+|+...... ..+++|.|..|-
T Consensus 348 ~p~~lEIG~G~G~~~~~~A~~~-p~~~~iGiE~~~~~~~~~~~~~~~~~l~N-~~~~~~~~~~~~~~~~~~sv~~i~i~F 425 (506)
T PRK01544 348 RKVFLEIGFGMGEHFINQAKMN-PDALFIGVEVYLNGVANVLKLAGEQNITN-FLLFPNNLDLILNDLPNNSLDGIYILF 425 (506)
T ss_pred CceEEEECCCchHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHHcCCCe-EEEEcCCHHHHHHhcCcccccEEEEEC
Confidence 4589999999999999999996 99999999999999999999988889865 88988886422111 136799999986
Q ss_pred C--CCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 275 P--YIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 275 P--Yi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
| |-.. +|.-+. + .-..+++..++.|||||.
T Consensus 426 PDPWpKk-----------rh~krR-l--------~~~~fl~~~~~~Lk~gG~ 457 (506)
T PRK01544 426 PDPWIKN-----------KQKKKR-I--------FNKERLKILQDKLKDNGN 457 (506)
T ss_pred CCCCCCC-----------CCcccc-c--------cCHHHHHHHHHhcCCCCE
Confidence 4 4221 222111 1 123678888999999994
|
|
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=3.7e-05 Score=71.38 Aligned_cols=138 Identities=8% Similarity=-0.129 Sum_probs=89.3
Q ss_pred CCCceeEE-ecccccCeeeeeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEE
Q 020573 146 RKPFQYLV-GCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSII 224 (324)
Q Consensus 146 ~~pl~yi~-g~~~f~~l~~~v~~~vliPrp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~ 224 (324)
+-+.|.|. -+..-+|.-+.++ ++.. ...-|.+...++-.. .-.....+++||=+|.|-|..+..+.+. + .+|+
T Consensus 25 kS~~Q~i~i~es~~fGr~LvLD-~~~~-te~dEfiYHEmLvHp-pl~~h~~pk~VLIiGGGDGg~~REvLkh--~-~~v~ 98 (262)
T PRK00536 25 RSEHNILEIFKSKDFGEIAMLN-KQLL-FKNFLHIESELLAHM-GGCTKKELKEVLIVDGFDLELAHQLFKY--D-THVD 98 (262)
T ss_pred CCCCcEEEEEEccccccEEEEe-eeee-ecchhhhHHHHHHHH-HHhhCCCCCeEEEEcCCchHHHHHHHCc--C-CeeE
Confidence 45677643 2444557777777 5543 333344444444332 1112335689999999999999999997 4 3999
Q ss_pred EEeCCHHHHHHHHHHHHHc--CC-CCcEEEEEcccccccccCCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCC
Q 020573 225 AVDLNPLAAAVAAFNAQRY--GL-QDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGG 301 (324)
Q Consensus 225 gvDis~~al~~Ar~N~~~~--gl-~~rv~~~~gD~~~~l~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg 301 (324)
-|||+++.++.+++..-.. ++ +.|++++. ++. ....++||+||.+-.|-
T Consensus 99 mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~--~~~--~~~~~~fDVIIvDs~~~------------------------ 150 (262)
T PRK00536 99 FVQADEKILDSFISFFPHFHEVKNNKNFTHAK--QLL--DLDIKKYDLIICLQEPD------------------------ 150 (262)
T ss_pred EEECCHHHHHHHHHHCHHHHHhhcCCCEEEee--hhh--hccCCcCCEEEEcCCCC------------------------
Confidence 9999999999999954321 22 35788876 221 11136899999963211
Q ss_pred CCcHHHHHHHHHHHhcccCCCCC
Q 020573 302 VDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 302 ~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
..+.+.+.+.|+|||+
T Consensus 151 -------~~fy~~~~~~L~~~Gi 166 (262)
T PRK00536 151 -------IHKIDGLKRMLKEDGV 166 (262)
T ss_pred -------hHHHHHHHHhcCCCcE
Confidence 1456777888999985
|
|
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.20 E-value=5.5e-06 Score=73.61 Aligned_cols=78 Identities=17% Similarity=0.261 Sum_probs=62.4
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHhCCCcE-EEEEeCCHHHHHHHHHHHHHcCC---------CCcEEEEEcccccccccC
Q 020573 194 LRDGFWVDLGTGSGAIAIGIARVLGSKGS-IIAVDLNPLAAAVAAFNAQRYGL---------QDIIEIRQGSWFGKLKDV 263 (324)
Q Consensus 194 ~~~~~VLDLGcGsG~iai~la~~~~p~~~-V~gvDis~~al~~Ar~N~~~~gl---------~~rv~~~~gD~~~~l~~~ 263 (324)
.++.++||+|+|||+++..++...+..+. ++|||.-++.++.+++|+.+.-- ..++.++.||......+
T Consensus 81 ~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e- 159 (237)
T KOG1661|consen 81 QPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAE- 159 (237)
T ss_pred ccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCc-
Confidence 35779999999999999999976655444 49999999999999999976531 23588889998775544
Q ss_pred CCCeeEEEE
Q 020573 264 EGKLSGVVS 272 (324)
Q Consensus 264 ~~~fDlIVs 272 (324)
..+||.|.+
T Consensus 160 ~a~YDaIhv 168 (237)
T KOG1661|consen 160 QAPYDAIHV 168 (237)
T ss_pred cCCcceEEE
Confidence 468999988
|
|
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.6e-06 Score=78.46 Aligned_cols=135 Identities=13% Similarity=0.208 Sum_probs=86.1
Q ss_pred cCeeeeeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCC--cEEEEEeCCHHHHHHH
Q 020573 159 RDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSK--GSIIAVDLNPLAAAVA 236 (324)
Q Consensus 159 ~~l~~~v~~~vliPrp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~--~~V~gvDis~~al~~A 236 (324)
|+.-+.....-|.. +.+++....-++. ...+ ....+||++|||.|.....+.+.. ++ ..|+++|.|+.|+++.
T Consensus 39 wD~fy~~~~~rFfk--dR~wL~~Efpel~-~~~~-~~~~~ilEvGCGvGNtvfPll~~~-~n~~l~v~acDfsp~Ai~~v 113 (264)
T KOG2361|consen 39 WDTFYKIHENRFFK--DRNWLLREFPELL-PVDE-KSAETILEVGCGVGNTVFPLLKTS-PNNRLKVYACDFSPRAIELV 113 (264)
T ss_pred hhhhhhhccccccc--hhHHHHHhhHHhh-Cccc-cChhhheeeccCCCcccchhhhcC-CCCCeEEEEcCCChHHHHHH
Confidence 34434444444432 3445555544444 2111 223379999999999999999874 66 7999999999999999
Q ss_pred HHHHHHcCCCCcEEEEEccccccc---ccCCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHH
Q 020573 237 AFNAQRYGLQDIIEIRQGSWFGKL---KDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCN 313 (324)
Q Consensus 237 r~N~~~~gl~~rv~~~~gD~~~~l---~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~ 313 (324)
++|..... .++.....|+..+- +...+.+|+|++= |+ ++.+.+ +-....++
T Consensus 114 k~~~~~~e--~~~~afv~Dlt~~~~~~~~~~~svD~it~I--Fv----LSAi~p------------------ek~~~a~~ 167 (264)
T KOG2361|consen 114 KKSSGYDE--SRVEAFVWDLTSPSLKEPPEEGSVDIITLI--FV----LSAIHP------------------EKMQSVIK 167 (264)
T ss_pred Hhccccch--hhhcccceeccchhccCCCCcCccceEEEE--EE----EeccCh------------------HHHHHHHH
Confidence 99876543 45666666655432 1124789988771 11 122222 23346788
Q ss_pred HHhcccCCCCC
Q 020573 314 GTASMLKPDKW 324 (324)
Q Consensus 314 ~a~~~LkpgG~ 324 (324)
...++|||||.
T Consensus 168 nl~~llKPGG~ 178 (264)
T KOG2361|consen 168 NLRTLLKPGGS 178 (264)
T ss_pred HHHHHhCCCcE
Confidence 88999999994
|
|
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.4e-05 Score=67.30 Aligned_cols=95 Identities=23% Similarity=0.284 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHh---CCCcEEEEEeCCHHHHHHHHHHHHHcC--CCCcEE
Q 020573 176 TELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVL---GSKGSIIAVDLNPLAAAVAAFNAQRYG--LQDIIE 250 (324)
Q Consensus 176 te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~---~p~~~V~gvDis~~al~~Ar~N~~~~g--l~~rv~ 250 (324)
-+.+++.+...............|+|+|||.|+++..++..| .++.+|+|+|.++..++.|++..+..+ ...+++
T Consensus 6 i~~~~~~i~~~~~~~~~~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~ 85 (141)
T PF13679_consen 6 IERMAELIDSLCDSVGESKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLS 85 (141)
T ss_pred HHHHHHHHHHHHHHhhccCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccch
Confidence 344455544443111122346689999999999999999933 257899999999999999999998877 545677
Q ss_pred EEEcccccccccCCCCeeEEEE
Q 020573 251 IRQGSWFGKLKDVEGKLSGVVS 272 (324)
Q Consensus 251 ~~~gD~~~~l~~~~~~fDlIVs 272 (324)
+..++..+... ....+++|.
T Consensus 86 ~~~~~~~~~~~--~~~~~~~vg 105 (141)
T PF13679_consen 86 FIQGDIADESS--SDPPDILVG 105 (141)
T ss_pred hhccchhhhcc--cCCCeEEEE
Confidence 77776644211 235566665
|
|
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=98.19 E-value=3.9e-05 Score=71.55 Aligned_cols=106 Identities=22% Similarity=0.312 Sum_probs=82.0
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCC--cEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccc--cccCCCCeeEE
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSK--GSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGK--LKDVEGKLSGV 270 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~--~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~--l~~~~~~fDlI 270 (324)
.+.+|+|+.||.|...+-+.... +. ..|.-.|.|+..++..++-++..|+.+-++|.++|+|+. +..+..+.+++
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~-~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~ 213 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKH-PERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLA 213 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhC-CCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEE
Confidence 46799999999999988888776 44 689999999999999999999999998779999999985 33334466776
Q ss_pred EEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 271 VSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 271 VsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
|..==| ..-| --+.++.-+...++.+.|||+
T Consensus 214 iVsGL~--------------ElF~---------Dn~lv~~sl~gl~~al~pgG~ 244 (311)
T PF12147_consen 214 IVSGLY--------------ELFP---------DNDLVRRSLAGLARALEPGGY 244 (311)
T ss_pred EEecch--------------hhCC---------cHHHHHHHHHHHHHHhCCCcE
Confidence 662111 1111 135667788889999999985
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=3.9e-06 Score=78.87 Aligned_cols=105 Identities=20% Similarity=0.228 Sum_probs=71.7
Q ss_pred CCeEEEEcCCccH----HHHHHHHHhC---CCcEEEEEeCCHHHHHHHHHHHH--------------Hc-----------
Q 020573 196 DGFWVDLGTGSGA----IAIGIARVLG---SKGSIIAVDLNPLAAAVAAFNAQ--------------RY----------- 243 (324)
Q Consensus 196 ~~~VLDLGcGsG~----iai~la~~~~---p~~~V~gvDis~~al~~Ar~N~~--------------~~----------- 243 (324)
.-+|+..||+||- +|+.+...++ .+.+|+|+|+|+.+++.|++-+- ++
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 3699999999995 4455544321 14689999999999999987630 00
Q ss_pred -----CCCCcEEEEEcccccccccCCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcc
Q 020573 244 -----GLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASM 318 (324)
Q Consensus 244 -----gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~ 318 (324)
.+.++|+|.+.|+.+......++||+|+|. .|..|-. -+.-+++++...+.
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cR--------------NvliyF~----------~~~~~~vl~~l~~~ 251 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCR--------------NVMIYFD----------KTTQERILRRFVPL 251 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCccCCCcceeeHh--------------hHHhcCC----------HHHHHHHHHHHHHH
Confidence 022568899999987322224789999993 2222210 12345789999999
Q ss_pred cCCCCC
Q 020573 319 LKPDKW 324 (324)
Q Consensus 319 LkpgG~ 324 (324)
|+|||+
T Consensus 252 L~pgG~ 257 (287)
T PRK10611 252 LKPDGL 257 (287)
T ss_pred hCCCcE
Confidence 999995
|
|
| >PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes | Back alignment and domain information |
|---|
Probab=98.11 E-value=2.7e-05 Score=69.55 Aligned_cols=108 Identities=18% Similarity=0.086 Sum_probs=66.8
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCC-CcEEEEEeCCHHHHHHHHHHHHHcC-----------------------------
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGS-KGSIIAVDLNPLAAAVAAFNAQRYG----------------------------- 244 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p-~~~V~gvDis~~al~~Ar~N~~~~g----------------------------- 244 (324)
.+..+.|.|||+|++...+.-..+. -..|+|.|++++++++|++|+....
T Consensus 51 ~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~s 130 (246)
T PF11599_consen 51 GPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALES 130 (246)
T ss_dssp S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred CCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHHH
Confidence 4568999999999999888765322 2479999999999999999985331
Q ss_pred ------------CCCcEEEEEcccccccc----cCCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHH
Q 020573 245 ------------LQDIIEIRQGSWFGKLK----DVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYL 308 (324)
Q Consensus 245 ------------l~~rv~~~~gD~~~~l~----~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~ 308 (324)
-.....+.+.|.|++-. ......|+|+.+-||....++.. +.+-+-+
T Consensus 131 A~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g-----------------~~~~~p~ 193 (246)
T PF11599_consen 131 ADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQG-----------------EGSGGPV 193 (246)
T ss_dssp HHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS--------------------HHHH
T ss_pred HHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccC-----------------CCCCCcH
Confidence 01126788889987422 11234799999999986554422 1223456
Q ss_pred HHHHHHHhccc
Q 020573 309 LHLCNGTASML 319 (324)
Q Consensus 309 ~~il~~a~~~L 319 (324)
..+++.....|
T Consensus 194 ~~ml~~l~~vL 204 (246)
T PF11599_consen 194 AQMLNSLAPVL 204 (246)
T ss_dssp HHHHHHHHCCS
T ss_pred HHHHHHHHhhC
Confidence 67888888888
|
This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A. |
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.10 E-value=2.3e-05 Score=72.95 Aligned_cols=122 Identities=22% Similarity=0.231 Sum_probs=80.6
Q ss_pred HHHHHHHHHHhhhcCCCCCCCeEEEEcCCcc----HHHHHHHHHhC----CCcEEEEEeCCHHHHHHHHHH------HHH
Q 020573 177 ELMVDLVSDVLVRDNDGLRDGFWVDLGTGSG----AIAIGIARVLG----SKGSIIAVDLNPLAAAVAAFN------AQR 242 (324)
Q Consensus 177 e~lve~l~~~l~~~~~~~~~~~VLDLGcGsG----~iai~la~~~~----p~~~V~gvDis~~al~~Ar~N------~~~ 242 (324)
+.+.+.+...+...... ..-+|+-.||+|| .+|+.+.+.++ ...+|+|+|+|..+++.|+.- ..+
T Consensus 79 ~~l~~~v~p~l~~~~~~-~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~ 157 (268)
T COG1352 79 EELRDEVLPELVKRKKG-RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLR 157 (268)
T ss_pred HHHHHHHHHHHHhhccC-CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhc
Confidence 44555565543221111 4569999999999 57777777763 257999999999999999752 211
Q ss_pred ---------c------C-------CCCcEEEEEcccccccccCCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccC
Q 020573 243 ---------Y------G-------LQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDG 300 (324)
Q Consensus 243 ---------~------g-------l~~rv~~~~gD~~~~l~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~g 300 (324)
+ | +...|.|.+.|+.+... ..+.||+|+| ..|.-|--
T Consensus 158 ~~~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~-~~~~fD~IfC--------------RNVLIYFd------ 216 (268)
T COG1352 158 GLPPELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSP-FLGKFDLIFC--------------RNVLIYFD------ 216 (268)
T ss_pred cCCHHHHhhhEeecCCCcEEEChHHhcccEEeecCCCCCcc-ccCCCCEEEE--------------cceEEeeC------
Confidence 0 0 12358888888887543 4578999999 33322211
Q ss_pred CCCcHHHHHHHHHHHhcccCCCCC
Q 020573 301 GVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 301 g~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
-..-+++++.-+..|+|||+
T Consensus 217 ----~~~q~~il~~f~~~L~~gG~ 236 (268)
T COG1352 217 ----EETQERILRRFADSLKPGGL 236 (268)
T ss_pred ----HHHHHHHHHHHHHHhCCCCE
Confidence 11224788888999999995
|
|
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=98.10 E-value=1.3e-05 Score=66.79 Aligned_cols=59 Identities=20% Similarity=0.242 Sum_probs=52.6
Q ss_pred eEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccc
Q 020573 198 FWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFG 258 (324)
Q Consensus 198 ~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~ 258 (324)
.++|+|||.|.+++.+++.. +.++|+++|.++.+.+.+++|++.+++.+ +.+++..+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~-~~~~v~~~E~~~~~~~~l~~~~~~n~~~~-v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKG-AEGRVIAFEPLPDAYEILEENVKLNNLPN-VVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhC-CCCEEEEEecCHHHHHHHHHHHHHcCCCc-EEEEEeeeeC
Confidence 38999999999999999875 77799999999999999999999998865 8888877664
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.10 E-value=9.9e-06 Score=76.20 Aligned_cols=105 Identities=16% Similarity=0.142 Sum_probs=74.6
Q ss_pred CCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcC-CCC----cEEEEEcccccc-----cccCCC
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYG-LQD----IIEIRQGSWFGK-----LKDVEG 265 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~g-l~~----rv~~~~gD~~~~-----l~~~~~ 265 (324)
+..++|||||-|.-++-.-+. .-..++|+||.+..++.|++..+... ... .+.|+.+|.+.. ++..+.
T Consensus 118 ~~~~~~LgCGKGGDLlKw~kA--gI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp 195 (389)
T KOG1975|consen 118 GDDVLDLGCGKGGDLLKWDKA--GIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDP 195 (389)
T ss_pred ccccceeccCCcccHhHhhhh--cccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCC
Confidence 457899999999988887765 35789999999999999998876431 111 278999998753 222233
Q ss_pred CeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 266 KLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 266 ~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
+||+|-|- |--|.++. -.+-.+.++..++++|||||+
T Consensus 196 ~fDivScQ------------------F~~HYaFe----tee~ar~~l~Nva~~LkpGG~ 232 (389)
T KOG1975|consen 196 RFDIVSCQ------------------FAFHYAFE----TEESARIALRNVAKCLKPGGV 232 (389)
T ss_pred Ccceeeee------------------eeEeeeec----cHHHHHHHHHHHHhhcCCCcE
Confidence 59988872 22222322 134456789999999999996
|
|
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.09 E-value=1.2e-05 Score=71.55 Aligned_cols=121 Identities=21% Similarity=0.267 Sum_probs=68.1
Q ss_pred HHHHHHHHH-HhhhcCCCCCCCeEEEEcCCccH----HHHHHHHHh----CCCcEEEEEeCCHHHHHHHHHHH-------
Q 020573 177 ELMVDLVSD-VLVRDNDGLRDGFWVDLGTGSGA----IAIGIARVL----GSKGSIIAVDLNPLAAAVAAFNA------- 240 (324)
Q Consensus 177 e~lve~l~~-~l~~~~~~~~~~~VLDLGcGsG~----iai~la~~~----~p~~~V~gvDis~~al~~Ar~N~------- 240 (324)
+.+.+.++. .+ ........-+|+..||+||- +++.+.... +-..+|+|+|+|+.+++.|++-+
T Consensus 13 ~~l~~~vlp~~~-~~~~~~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~ 91 (196)
T PF01739_consen 13 EALRDEVLPPLL-ARARPGRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLR 91 (196)
T ss_dssp HHHHHHHH--------CS-S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGT
T ss_pred HHHHHHHHHhhc-cccCCCCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHh
Confidence 456666663 33 22222245699999999995 444444421 11469999999999999997621
Q ss_pred -------HHc-----C--------CCCcEEEEEcccccccccCCCCeeEEEEcCCCCCCCCcccchhhhhc-cccccccc
Q 020573 241 -------QRY-----G--------LQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGK-HEPRLALD 299 (324)
Q Consensus 241 -------~~~-----g--------l~~rv~~~~gD~~~~l~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~-~eP~~aL~ 299 (324)
+++ + +.++|.|.+.|+.+. ....++||+|+|. .|.- +.
T Consensus 92 ~~~~~~~~ryf~~~~~~~~~v~~~lr~~V~F~~~NL~~~-~~~~~~fD~I~CR--------------NVlIYF~------ 150 (196)
T PF01739_consen 92 GLPPAYLRRYFTERDGGGYRVKPELRKMVRFRRHNLLDP-DPPFGRFDLIFCR--------------NVLIYFD------ 150 (196)
T ss_dssp TS-HHHHHHHEEEE-CCCTTE-HHHHTTEEEEE--TT-S-------EEEEEE---------------SSGGGS-------
T ss_pred hhHHHHHHHhccccCCCceeEChHHcCceEEEecccCCC-CcccCCccEEEec--------------CEEEEeC------
Confidence 111 0 124699999999882 2235799999993 2222 21
Q ss_pred CCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 300 GGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 300 gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
-+.-.++++..++.|+|||+
T Consensus 151 -----~~~~~~vl~~l~~~L~pgG~ 170 (196)
T PF01739_consen 151 -----PETQQRVLRRLHRSLKPGGY 170 (196)
T ss_dssp -----HHHHHHHHHHHGGGEEEEEE
T ss_pred -----HHHHHHHHHHHHHHcCCCCE
Confidence 23345789999999999995
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.08 E-value=4.5e-05 Score=65.64 Aligned_cols=116 Identities=16% Similarity=0.169 Sum_probs=84.2
Q ss_pred chHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEE
Q 020573 174 PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQ 253 (324)
Q Consensus 174 p~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~ 253 (324)
|.+..+.+.+...+ +...+.-||++|.|+|.++-++.++--+...++++|.|++.+....+. -+.+++++
T Consensus 31 PsSs~lA~~M~s~I----~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~------~p~~~ii~ 100 (194)
T COG3963 31 PSSSILARKMASVI----DPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQL------YPGVNIIN 100 (194)
T ss_pred CCcHHHHHHHHhcc----CcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHh------CCCccccc
Confidence 34556777777665 334566899999999999999988755678899999999998766543 23478999
Q ss_pred ccccccc----ccCCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCC
Q 020573 254 GSWFGKL----KDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDK 323 (324)
Q Consensus 254 gD~~~~l----~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG 323 (324)
||.++.- +.....||.|||--|...- +. ..--++++.+...|..||
T Consensus 101 gda~~l~~~l~e~~gq~~D~viS~lPll~~------P~------------------~~~iaile~~~~rl~~gg 150 (194)
T COG3963 101 GDAFDLRTTLGEHKGQFFDSVISGLPLLNF------PM------------------HRRIAILESLLYRLPAGG 150 (194)
T ss_pred cchhhHHHHHhhcCCCeeeeEEeccccccC------cH------------------HHHHHHHHHHHHhcCCCC
Confidence 9998742 1234579999998886522 11 112268888888898887
|
|
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=98.06 E-value=6.6e-06 Score=70.71 Aligned_cols=74 Identities=20% Similarity=0.148 Sum_probs=53.4
Q ss_pred EEEeCCHHHHHHHHHHHHHcC--CCCcEEEEEcccccccccCCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCC
Q 020573 224 IAVDLNPLAAAVAAFNAQRYG--LQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGG 301 (324)
Q Consensus 224 ~gvDis~~al~~Ar~N~~~~g--l~~rv~~~~gD~~~~l~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg 301 (324)
+|+|+|++|++.|+++.+..+ ..++++++++|..+ ++...++||+|+++ | +.+|-+
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~-lp~~~~~fD~v~~~--~------------~l~~~~------- 58 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAID-LPFDDCEFDAVTMG--Y------------GLRNVV------- 58 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhh-CCCCCCCeeEEEec--c------------hhhcCC-------
Confidence 489999999999988765332 23469999999876 44445689999984 1 112211
Q ss_pred CCcHHHHHHHHHHHhcccCCCCC
Q 020573 302 VDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 302 ~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
....+++++.++|||||.
T Consensus 59 -----d~~~~l~ei~rvLkpGG~ 76 (160)
T PLN02232 59 -----DRLRAMKEMYRVLKPGSR 76 (160)
T ss_pred -----CHHHHHHHHHHHcCcCeE
Confidence 223688999999999994
|
|
| >TIGR00497 hsdM type I restriction system adenine methylase (hsdM) | Back alignment and domain information |
|---|
Probab=98.04 E-value=3.1e-05 Score=78.42 Aligned_cols=108 Identities=22% Similarity=0.242 Sum_probs=74.0
Q ss_pred eeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhC---CCcEEEEEeCCHHHHHHHHHHHH
Q 020573 165 VEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLG---SKGSIIAVDLNPLAAAVAAFNAQ 241 (324)
Q Consensus 165 v~~~vliPrp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~---p~~~V~gvDis~~al~~Ar~N~~ 241 (324)
-...++.|+...+++++.+... ..+...+.|++||||.+.+...+... ....++|.++...+...|+.|+.
T Consensus 193 ~~g~~~Tp~~Iv~l~~~~~~~~------~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~ 266 (501)
T TIGR00497 193 SGGEFFTPQDISELLARIAIGK------KDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMI 266 (501)
T ss_pred cCceeeCcHHHHHHHHHHhccC------CCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHH
Confidence 3445677887777766543321 11345899999999999987665431 12469999999999999999998
Q ss_pred HcCCCC-cEEEEEccccccccc-CCCCeeEEEEcCCCCC
Q 020573 242 RYGLQD-IIEIRQGSWFGKLKD-VEGKLSGVVSNPPYIP 278 (324)
Q Consensus 242 ~~gl~~-rv~~~~gD~~~~l~~-~~~~fDlIVsNPPYi~ 278 (324)
.++... ......+|-+..... ...+||.|++||||..
T Consensus 267 l~~~~~~t~~~~~~dtl~~~d~~~~~~~D~v~~NpPf~~ 305 (501)
T TIGR00497 267 LHNIDYANFNIINADTLTTKEWENENGFEVVVSNPPYSI 305 (501)
T ss_pred HcCCCccccCcccCCcCCCccccccccCCEEeecCCccc
Confidence 887642 244445555442211 1247999999999975
|
Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)). |
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=98.03 E-value=1.6e-05 Score=66.85 Aligned_cols=86 Identities=19% Similarity=0.181 Sum_probs=61.1
Q ss_pred EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCC-CeeEEEEcCCCCCCCCcccchhhhhcccccccccC
Q 020573 222 SIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEG-KLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDG 300 (324)
Q Consensus 222 ~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~-~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~g 300 (324)
+|+|.||.++|++.+++.++..++.+++++++.+-......... ++|+++.|--|.|.+|..-...
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~------------- 67 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTK------------- 67 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB---------------
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcC-------------
Confidence 69999999999999999999999988999999887664443334 8999999999999887542221
Q ss_pred CCCcHHHHHHHHHHHhcccCCCCC
Q 020573 301 GVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 301 g~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
-+-.-..++.+.+.|++||+
T Consensus 68 ----~~TTl~Al~~al~lL~~gG~ 87 (140)
T PF06962_consen 68 ----PETTLKALEAALELLKPGGI 87 (140)
T ss_dssp ----HHHHHHHHHHHHHHEEEEEE
T ss_pred ----cHHHHHHHHHHHHhhccCCE
Confidence 11222567888899999984
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=98.03 E-value=1.8e-05 Score=72.00 Aligned_cols=40 Identities=15% Similarity=0.238 Sum_probs=34.5
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHH
Q 020573 194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAV 235 (324)
Q Consensus 194 ~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~ 235 (324)
..+.++||+|||+|.++..+++. ...+|+|+|+++.++..
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~--ga~~v~avD~~~~~l~~ 113 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQK--GAKEVYGVDVGYNQLAE 113 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHc--CCCEEEEEeCCHHHHHH
Confidence 35678999999999999999986 34789999999987765
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=98.00 E-value=3.9e-05 Score=70.52 Aligned_cols=89 Identities=20% Similarity=0.353 Sum_probs=64.3
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEE-cccccccccCCCCeeEEEEc
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQ-GSWFGKLKDVEGKLSGVVSN 273 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~-gD~~~~l~~~~~~fDlIVsN 273 (324)
...++||||+|.|.++..++..| .+|+++|+|+.|.. .+++.|. +++. .||.+ ...+||+|.|
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f---~~v~aTE~S~~Mr~----rL~~kg~----~vl~~~~w~~----~~~~fDvIsc- 157 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLF---KEVYATEASPPMRW----RLSKKGF----TVLDIDDWQQ----TDFKFDVISC- 157 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhc---ceEEeecCCHHHHH----HHHhCCC----eEEehhhhhc----cCCceEEEee-
Confidence 45689999999999999999987 57999999998854 3444554 3332 23332 1358999999
Q ss_pred CCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 274 PPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
++.|+. .+.|. .+++++.+.|+|+|+
T Consensus 158 --------LNvLDR---c~~P~--------------~LL~~i~~~l~p~G~ 183 (265)
T PF05219_consen 158 --------LNVLDR---CDRPL--------------TLLRDIRRALKPNGR 183 (265)
T ss_pred --------hhhhhc---cCCHH--------------HHHHHHHHHhCCCCE
Confidence 344442 34443 588888999999995
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.99 E-value=6.1e-05 Score=67.56 Aligned_cols=75 Identities=19% Similarity=0.272 Sum_probs=66.9
Q ss_pred CCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEE
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVS 272 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVs 272 (324)
+.+++|+||--|++.+.+.+. .+...+++.|+++..++.|.+|+.++++.++++...+|-+..+.. +..+|+||.
T Consensus 17 ~~~iaDIGsDHAYLp~~Lv~~-~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~-~d~~d~ivI 91 (226)
T COG2384 17 GARIADIGSDHAYLPIYLVKN-NPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLEL-EDEIDVIVI 91 (226)
T ss_pred CCceeeccCchhHhHHHHHhc-CCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCc-cCCcCEEEE
Confidence 346999999999999999998 478899999999999999999999999999999999999887764 347888776
|
|
| >KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.99 E-value=6.2e-05 Score=73.14 Aligned_cols=120 Identities=18% Similarity=0.148 Sum_probs=91.4
Q ss_pred CCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccc-ccCCCCeeEE
Q 020573 192 DGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKL-KDVEGKLSGV 270 (324)
Q Consensus 192 ~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l-~~~~~~fDlI 270 (324)
...++.+|||+|+..|.-+..+|......+.|+|.|.+..-+...+.|+.++|+.+ ..+...|..+.- ....++||-|
T Consensus 238 ~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~n-tiv~n~D~~ef~~~~~~~~fDRV 316 (460)
T KOG1122|consen 238 DPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTN-TIVSNYDGREFPEKEFPGSFDRV 316 (460)
T ss_pred CCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCc-eEEEccCcccccccccCccccee
Confidence 34467899999999999999999887677899999999999999999999999876 777777765432 1223489999
Q ss_pred EEcCCCCCCCCcccch--------hhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 271 VSNPPYIPSDDISGLQ--------VEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 271 VsNPPYi~~~~~~~l~--------~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
+.+-|+..++.+..-+ .++.+| -..-++++..|.+++++||+
T Consensus 317 LLDAPCSGtgvi~K~~~vkt~k~~~di~~~------------~~LQr~LllsAi~lv~~GGv 366 (460)
T KOG1122|consen 317 LLDAPCSGTGVISKDQSVKTNKTVKDILRY------------AHLQRELLLSAIDLVKAGGV 366 (460)
T ss_pred eecCCCCCCcccccccccccchhHHHHHHh------------HHHHHHHHHHHHhhccCCcE
Confidence 9999997654432211 122222 12347899999999999996
|
|
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=97.99 E-value=2.5e-06 Score=67.80 Aligned_cols=97 Identities=24% Similarity=0.283 Sum_probs=41.4
Q ss_pred EEEcCCccHHHHHHHHHhCCCc--EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCC-CCeeEEEEcCCC
Q 020573 200 VDLGTGSGAIAIGIARVLGSKG--SIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVE-GKLSGVVSNPPY 276 (324)
Q Consensus 200 LDLGcGsG~iai~la~~~~p~~--~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~-~~fDlIVsNPPY 276 (324)
||+||..|..++.+++.+.++. +++++|..+. .+.+++++++.++.+++++++++..+.++... +++|+|+.+=
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg-- 77 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG-- 77 (106)
T ss_dssp --------------------------EEEESS-------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES--
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECC--
Confidence 6899999999999998775544 7999999986 55566667667787889999999977655443 6899999841
Q ss_pred CCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 277 IPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 277 i~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
.|. -.....-++.+..+|+|||+
T Consensus 78 --------------~H~-----------~~~~~~dl~~~~~~l~~ggv 100 (106)
T PF13578_consen 78 --------------DHS-----------YEAVLRDLENALPRLAPGGV 100 (106)
T ss_dssp ----------------------------HHHHHHHHHHHGGGEEEEEE
T ss_pred --------------CCC-----------HHHHHHHHHHHHHHcCCCeE
Confidence 111 12334567888899999984
|
|
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.93 E-value=1.7e-05 Score=69.86 Aligned_cols=73 Identities=26% Similarity=0.453 Sum_probs=62.3
Q ss_pred CCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEE
Q 020573 192 DGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVV 271 (324)
Q Consensus 192 ~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIV 271 (324)
+...+++|||+|+|+|..+++.++. ....|++.|+.+......+.|++.||+. +.+...|... . ...||+|+
T Consensus 76 etVrgkrVLd~gagsgLvaIAaa~a--GA~~v~a~d~~P~~~~ai~lNa~angv~--i~~~~~d~~g--~--~~~~Dl~L 147 (218)
T COG3897 76 ETVRGKRVLDLGAGSGLVAIAAARA--GAAEVVAADIDPWLEQAIRLNAAANGVS--ILFTHADLIG--S--PPAFDLLL 147 (218)
T ss_pred cccccceeeecccccChHHHHHHHh--hhHHHHhcCCChHHHHHhhcchhhccce--eEEeeccccC--C--CcceeEEE
Confidence 4457889999999999999999997 4578999999999999999999999974 8888888754 1 35799877
Q ss_pred E
Q 020573 272 S 272 (324)
Q Consensus 272 s 272 (324)
.
T Consensus 148 a 148 (218)
T COG3897 148 A 148 (218)
T ss_pred e
Confidence 6
|
|
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=97.92 E-value=4.3e-05 Score=72.37 Aligned_cols=92 Identities=21% Similarity=0.347 Sum_probs=72.8
Q ss_pred HHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccc
Q 020573 178 LMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWF 257 (324)
Q Consensus 178 ~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~ 257 (324)
.|.+.+++.+ ...+++.++|.-+|.|.-+..+++.+ ++++|+|+|.++.|++.|+++++.+ .++++++++++.
T Consensus 7 Vll~Evl~~L----~~~~ggiyVD~TlG~GGHS~~iL~~l-~~g~vigiD~D~~Al~~ak~~L~~~--~~R~~~i~~nF~ 79 (305)
T TIGR00006 7 VLLDEVVEGL----NIKPDGIYIDCTLGFGGHSKAILEQL-GTGRLIGIDRDPQAIAFAKERLSDF--EGRVVLIHDNFA 79 (305)
T ss_pred hhHHHHHHhc----CcCCCCEEEEeCCCChHHHHHHHHhC-CCCEEEEEcCCHHHHHHHHHHHhhc--CCcEEEEeCCHH
Confidence 4667777766 23356799999999999999999987 4599999999999999999998765 468999999987
Q ss_pred cccccC----CCCeeEEEEcCCC
Q 020573 258 GKLKDV----EGKLSGVVSNPPY 276 (324)
Q Consensus 258 ~~l~~~----~~~fDlIVsNPPY 276 (324)
+....+ ..++|.|+.|--.
T Consensus 80 ~l~~~l~~~~~~~vDgIl~DLGv 102 (305)
T TIGR00006 80 NFFEHLDELLVTKIDGILVDLGV 102 (305)
T ss_pred HHHHHHHhcCCCcccEEEEeccC
Confidence 632211 2469999998654
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2 | Back alignment and domain information |
|---|
Probab=97.89 E-value=2.3e-05 Score=76.48 Aligned_cols=81 Identities=22% Similarity=0.190 Sum_probs=62.5
Q ss_pred CCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCC-cEEEEEcccccccccCCCCeeEEEEcC
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQD-IIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~-rv~~~~gD~~~~l~~~~~~fDlIVsNP 274 (324)
+.++||.-+|||.=++..++++....+|++-|+|++|++..++|++.|++.+ ++++.+.|.-..+......||+|=.+
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDlD- 128 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDLD- 128 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE--
T ss_pred CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEeC-
Confidence 3589999999999999999996455799999999999999999999999988 79999999876553234789999887
Q ss_pred CCC
Q 020573 275 PYI 277 (324)
Q Consensus 275 PYi 277 (324)
||.
T Consensus 129 PfG 131 (377)
T PF02005_consen 129 PFG 131 (377)
T ss_dssp -SS
T ss_pred CCC
Confidence 454
|
1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: |
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00014 Score=69.54 Aligned_cols=150 Identities=19% Similarity=0.201 Sum_probs=100.4
Q ss_pred CCceeEEecccccCeeeeeeCCccc-ccch---HHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcE
Q 020573 147 KPFQYLVGCEHWRDLVLSVEEGVFI-PRPE---TELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGS 222 (324)
Q Consensus 147 ~pl~yi~g~~~f~~l~~~v~~~vli-Prp~---te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~ 222 (324)
.|.|.|+=..+=.++.++.+.+.=+ -|.+ +|.++--.++.+ ....++|-+|-|.|.-+..+.+. +.-.+
T Consensus 243 spYQ~iVvTr~g~d~rLYldG~LQfsTrDe~RYhEsLV~pals~~------~~a~~vLvlGGGDGLAlRellky-P~~~q 315 (508)
T COG4262 243 SPYQRIVVTRRGDDLRLYLDGGLQFSTRDEYRYHESLVYPALSSV------RGARSVLVLGGGDGLALRELLKY-PQVEQ 315 (508)
T ss_pred CccceEEEEEecCceEEEEcCceeeeechhhhhhheeeecccccc------cccceEEEEcCCchHHHHHHHhC-CCcce
Confidence 4666665444444677787777443 3433 233333222222 22458999999999999999885 33679
Q ss_pred EEEEeCCHHHHHHHHHHHHHc-----CC-CCcEEEEEcccccccccCCCCeeEEEEcCCCCCCCCcccchhhhhcccccc
Q 020573 223 IIAVDLNPLAAAVAAFNAQRY-----GL-QDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRL 296 (324)
Q Consensus 223 V~gvDis~~al~~Ar~N~~~~-----gl-~~rv~~~~gD~~~~l~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~ 296 (324)
|+-||++|++++.+++|.... .+ +.|++++..|.++.+.....+||.||.+-|=-.+..+..+..
T Consensus 316 I~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~vIVDl~DP~tps~~rlYS--------- 386 (508)
T COG4262 316 ITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDVVIVDLPDPSTPSIGRLYS--------- 386 (508)
T ss_pred EEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccEEEEeCCCCCCcchhhhhh---------
Confidence 999999999999999775322 22 358999999999988776679999999866433332222211
Q ss_pred cccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 297 ALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 297 aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
.+|..-+.++|+++|.
T Consensus 387 ------------~eFY~ll~~~l~e~Gl 402 (508)
T COG4262 387 ------------VEFYRLLSRHLAETGL 402 (508)
T ss_pred ------------HHHHHHHHHhcCcCce
Confidence 2455667889999884
|
|
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00016 Score=69.09 Aligned_cols=86 Identities=15% Similarity=0.082 Sum_probs=60.6
Q ss_pred cchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhC---CCcEEEEEeCCHHHHHHHHHHHHHcCCCC-c
Q 020573 173 RPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLG---SKGSIIAVDLNPLAAAVAAFNAQRYGLQD-I 248 (324)
Q Consensus 173 rp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~---p~~~V~gvDis~~al~~Ar~N~~~~gl~~-r 248 (324)
|-|.+++-+...+.. ... ..+..++|+|||+|.-...|.+.+. .....+++|+|.++++.+..++.....+. .
T Consensus 57 r~E~~iL~~~~~~Ia-~~i--~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~ 133 (319)
T TIGR03439 57 NDEIEILKKHSSDIA-ASI--PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVR 133 (319)
T ss_pred HHHHHHHHHHHHHHH-Hhc--CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeE
Confidence 566777776666655 221 2345899999999998777666552 23679999999999999999998333332 2
Q ss_pred EEEEEcccccccc
Q 020573 249 IEIRQGSWFGKLK 261 (324)
Q Consensus 249 v~~~~gD~~~~l~ 261 (324)
+.-+.||+.+.+.
T Consensus 134 v~~l~gdy~~~l~ 146 (319)
T TIGR03439 134 CAGLLGTYDDGLA 146 (319)
T ss_pred EEEEEecHHHHHh
Confidence 4448999877643
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=97.79 E-value=6.9e-05 Score=67.19 Aligned_cols=80 Identities=21% Similarity=0.295 Sum_probs=52.5
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHH-------cCC-CCcEEEEEccccccc--cc
Q 020573 193 GLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR-------YGL-QDIIEIRQGSWFGKL--KD 262 (324)
Q Consensus 193 ~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~-------~gl-~~rv~~~~gD~~~~l--~~ 262 (324)
..++...+|||||.|...+.+|... +-.+++|||+.+...+.|+.+.+. .|. ..++++.++|+.+.. ..
T Consensus 40 l~~~dvF~DlGSG~G~~v~~aal~~-~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~~ 118 (205)
T PF08123_consen 40 LTPDDVFYDLGSGVGNVVFQAALQT-GCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFVKD 118 (205)
T ss_dssp --TT-EEEEES-TTSHHHHHHHHHH---SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHc-CCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhHhh
Confidence 3456799999999999999888876 445699999999999988876643 233 346899999988642 11
Q ss_pred CCCCeeEEEEc
Q 020573 263 VEGKLSGVVSN 273 (324)
Q Consensus 263 ~~~~fDlIVsN 273 (324)
.-...|+|++|
T Consensus 119 ~~s~AdvVf~N 129 (205)
T PF08123_consen 119 IWSDADVVFVN 129 (205)
T ss_dssp HGHC-SEEEE-
T ss_pred hhcCCCEEEEe
Confidence 11357999997
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=97.79 E-value=2.7e-05 Score=67.92 Aligned_cols=100 Identities=23% Similarity=0.289 Sum_probs=63.3
Q ss_pred CCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccc-----cc----CCCC
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKL-----KD----VEGK 266 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l-----~~----~~~~ 266 (324)
+.++||+||++|.++..+.++.++.++|+|+|+.+. ... ..+.++++|..+.. .. ..++
T Consensus 24 ~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-----------~~~-~~~~~i~~d~~~~~~~~~i~~~~~~~~~~ 91 (181)
T PF01728_consen 24 GFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-----------DPL-QNVSFIQGDITNPENIKDIRKLLPESGEK 91 (181)
T ss_dssp TEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-----------GS--TTEEBTTGGGEEEEHSHHGGGSHGTTTCS
T ss_pred ccEEEEcCCcccceeeeeeecccccceEEEEecccc-----------ccc-cceeeeecccchhhHHHhhhhhccccccC
Confidence 479999999999999999997545789999999876 122 24777788876531 11 1258
Q ss_pred eeEEEEcC-CCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCC
Q 020573 267 LSGVVSNP-PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDK 323 (324)
Q Consensus 267 fDlIVsNP-PYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG 323 (324)
+|+|+++- |...... ..+.. .-++.....+.-|..+|++||
T Consensus 92 ~dlv~~D~~~~~~g~~---------~~d~~-------~~~~l~~~~l~~a~~~L~~gG 133 (181)
T PF01728_consen 92 FDLVLSDMAPNVSGDR---------NIDEF-------ISIRLILSQLLLALELLKPGG 133 (181)
T ss_dssp ESEEEE-------SSH---------HSSHH-------HHHHHHHHHHHHHHHHHCTTE
T ss_pred cceeccccccCCCCch---------hhHHH-------HHHHHHHHHHHHHHhhhcCCC
Confidence 99999974 2221110 00000 014555666778888999998
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00012 Score=70.25 Aligned_cols=77 Identities=16% Similarity=0.117 Sum_probs=64.3
Q ss_pred CCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcC
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNP 274 (324)
..+|+|.-+|||.=++..|.+. +..+|+.-|+||+|++.+++|++.|...+ ...++.|....+......||+|=.+|
T Consensus 53 ~~~v~DalsatGiRgIRya~E~-~~~~v~lNDisp~Avelik~Nv~~N~~~~-~~v~n~DAN~lm~~~~~~fd~IDiDP 129 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVET-GVVKVVLNDISPKAVELIKENVRLNSGED-AEVINKDANALLHELHRAFDVIDIDP 129 (380)
T ss_pred CeEEeecccccchhHhhhhhhc-CccEEEEccCCHHHHHHHHHHHHhcCccc-ceeecchHHHHHHhcCCCccEEecCC
Confidence 5689999999999999999997 44599999999999999999999995544 66666888766655457899998873
|
|
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0003 Score=65.73 Aligned_cols=76 Identities=17% Similarity=0.198 Sum_probs=48.5
Q ss_pred CCeEEEEcCCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH-HcCCCCcEEEEEcccccccccCCCCeeEEEE
Q 020573 196 DGFWVDLGTGS-GAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ-RYGLQDIIEIRQGSWFGKLKDVEGKLSGVVS 272 (324)
Q Consensus 196 ~~~VLDLGcGs-G~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~-~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVs 272 (324)
+.+|+=+|+|. -..++.+++..+++..|+++|++++|++.|++-++ ..|+..++.|+.+|..+....+ ..||+|+.
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl-~~~DvV~l 198 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDL-KEYDVVFL 198 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG-----SEEEE
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhcccccc-ccCCEEEE
Confidence 45999999994 56667777765567899999999999999999887 6688889999999987643332 58998887
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00061 Score=61.03 Aligned_cols=100 Identities=18% Similarity=0.261 Sum_probs=76.8
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccC-CCCeeEEEEc
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDV-EGKLSGVVSN 273 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~-~~~fDlIVsN 273 (324)
++++||.+|-|-|.+...+-.. .| .+=+-+|.+++.++..+++.=.. ..+|.++.|-|.+.++.+ ++.||.|.-+
T Consensus 101 kggrvLnVGFGMgIidT~iQe~-~p-~~H~IiE~hp~V~krmr~~gw~e--k~nViil~g~WeDvl~~L~d~~FDGI~yD 176 (271)
T KOG1709|consen 101 KGGRVLNVGFGMGIIDTFIQEA-PP-DEHWIIEAHPDVLKRMRDWGWRE--KENVIILEGRWEDVLNTLPDKHFDGIYYD 176 (271)
T ss_pred CCceEEEeccchHHHHHHHhhc-CC-cceEEEecCHHHHHHHHhccccc--ccceEEEecchHhhhccccccCcceeEee
Confidence 5789999999999999988775 35 45567899999998888775322 346999999998876553 4679999974
Q ss_pred CCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 274 PPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
.|-|. .+.++++.+.+.++|||+|+
T Consensus 177 -----------------Ty~e~---------yEdl~~~hqh~~rLLkP~gv 201 (271)
T KOG1709|consen 177 -----------------TYSEL---------YEDLRHFHQHVVRLLKPEGV 201 (271)
T ss_pred -----------------chhhH---------HHHHHHHHHHHhhhcCCCce
Confidence 12111 35677889999999999995
|
|
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00068 Score=60.53 Aligned_cols=102 Identities=23% Similarity=0.249 Sum_probs=69.6
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc------cC-CCCe
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK------DV-EGKL 267 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~------~~-~~~f 267 (324)
++.+|+|||+-.|..+..+++..+++.+|+|+|+.|-.. . ..|.++++|+++.-. .+ ...+
T Consensus 45 ~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~-----------~-~~V~~iq~d~~~~~~~~~l~~~l~~~~~ 112 (205)
T COG0293 45 PGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP-----------I-PGVIFLQGDITDEDTLEKLLEALGGAPV 112 (205)
T ss_pred CCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccccc-----------C-CCceEEeeeccCccHHHHHHHHcCCCCc
Confidence 467999999999999999999987777899999987321 2 249999999986421 11 2357
Q ss_pred eEEEEcC-CCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 268 SGVVSNP-PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 268 DlIVsNP-PYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
|+|+|++ |=+ ..... ..++. -+......++.|..+|++||.
T Consensus 113 DvV~sD~ap~~--~g~~~------~Dh~r--------~~~L~~~a~~~a~~vL~~~G~ 154 (205)
T COG0293 113 DVVLSDMAPNT--SGNRS------VDHAR--------SMYLCELALEFALEVLKPGGS 154 (205)
T ss_pred ceEEecCCCCc--CCCcc------ccHHH--------HHHHHHHHHHHHHHeeCCCCe
Confidence 9999864 211 00000 01111 144556778888999999983
|
|
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0003 Score=62.84 Aligned_cols=94 Identities=15% Similarity=0.162 Sum_probs=51.6
Q ss_pred HHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccc
Q 020573 180 VDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGK 259 (324)
Q Consensus 180 ve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~ 259 (324)
++.+.+++ . .......|.|+|||-+.++..+.. ..+|+..|+... . -.+...|+..
T Consensus 60 vd~iI~~l-~--~~~~~~viaD~GCGdA~la~~~~~----~~~V~SfDLva~--------------n--~~Vtacdia~- 115 (219)
T PF05148_consen 60 VDVIIEWL-K--KRPKSLVIADFGCGDAKLAKAVPN----KHKVHSFDLVAP--------------N--PRVTACDIAN- 115 (219)
T ss_dssp HHHHHHHH-C--TS-TTS-EEEES-TT-HHHHH--S-------EEEEESS-S--------------S--TTEEES-TTS-
T ss_pred HHHHHHHH-H--hcCCCEEEEECCCchHHHHHhccc----CceEEEeeccCC--------------C--CCEEEecCcc-
Confidence 34445555 1 112346899999999999965432 357999999631 1 2356677744
Q ss_pred cccCCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 260 LKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 260 l~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
++-..+.+|++|+.-- .|-. .+..++.+|.|.||+||.
T Consensus 116 vPL~~~svDv~VfcLS--------LMGT-------------------n~~~fi~EA~RvLK~~G~ 153 (219)
T PF05148_consen 116 VPLEDESVDVAVFCLS--------LMGT-------------------NWPDFIREANRVLKPGGI 153 (219)
T ss_dssp -S--TT-EEEEEEES-----------SS--------------------HHHHHHHHHHHEEEEEE
T ss_pred CcCCCCceeEEEEEhh--------hhCC-------------------CcHHHHHHHHheeccCcE
Confidence 3333579999998521 1111 244689999999999994
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00082 Score=62.90 Aligned_cols=52 Identities=21% Similarity=0.181 Sum_probs=43.0
Q ss_pred CCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHc
Q 020573 192 DGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRY 243 (324)
Q Consensus 192 ~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~ 243 (324)
....+.+|||+|||.|.-..++...++.-.+++++|.|+.|+++++.-++..
T Consensus 30 p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~ 81 (274)
T PF09243_consen 30 PDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAG 81 (274)
T ss_pred cCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcc
Confidence 4456789999999999988888777754568999999999999999876544
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0018 Score=60.45 Aligned_cols=101 Identities=15% Similarity=0.237 Sum_probs=70.0
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcC----------------------------C-
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYG----------------------------L- 245 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~g----------------------------l- 245 (324)
.+.+||-.|||.|.++..+|.. +..+.|.|.|--|+-..+-.+.... +
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~---G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iP 132 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKL---GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIP 132 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhc---cceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeC
Confidence 4569999999999999999996 4799999999988766554332100 0
Q ss_pred ----------CCcEEEEEcccccccccC--CCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHH
Q 020573 246 ----------QDIIEIRQGSWFGKLKDV--EGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCN 313 (324)
Q Consensus 246 ----------~~rv~~~~gD~~~~l~~~--~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~ 313 (324)
..++....||+.+..... .++||+|++. =||+ -...+-..++
T Consensus 133 Dv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~-FFID-------------------------TA~Ni~~Yi~ 186 (270)
T PF07942_consen 133 DVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTC-FFID-------------------------TAENIIEYIE 186 (270)
T ss_pred CcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEE-EEee-------------------------chHHHHHHHH
Confidence 124666777777654332 3688888885 1121 1233446788
Q ss_pred HHhcccCCCCC
Q 020573 314 GTASMLKPDKW 324 (324)
Q Consensus 314 ~a~~~LkpgG~ 324 (324)
.+.++|||||+
T Consensus 187 tI~~lLkpgG~ 197 (270)
T PF07942_consen 187 TIEHLLKPGGY 197 (270)
T ss_pred HHHHHhccCCE
Confidence 88999999994
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00031 Score=65.69 Aligned_cols=74 Identities=18% Similarity=0.187 Sum_probs=56.4
Q ss_pred eEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccC-CCCeeEEEEcCCC
Q 020573 198 FWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDV-EGKLSGVVSNPPY 276 (324)
Q Consensus 198 ~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~-~~~fDlIVsNPPY 276 (324)
+++|++||.|.+...+.+. + -..|+++|+++.|++..+.|... .++.+|..+..... .+.+|+|+..||+
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~-G-~~~v~a~e~~~~a~~~~~~N~~~-------~~~~~Di~~~~~~~~~~~~D~l~~gpPC 72 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKA-G-FEIVAANEIDKSAAETYEANFPN-------KLIEGDITKIDEKDFIPDIDLLTGGFPC 72 (275)
T ss_pred cEEEEccCcchHHHHHHHc-C-CEEEEEEeCCHHHHHHHHHhCCC-------CCccCccccCchhhcCCCCCEEEeCCCC
Confidence 6899999999999988775 2 35689999999999999988631 14566666533221 3579999999999
Q ss_pred CCCC
Q 020573 277 IPSD 280 (324)
Q Consensus 277 i~~~ 280 (324)
-+.+
T Consensus 73 q~fS 76 (275)
T cd00315 73 QPFS 76 (275)
T ss_pred hhhh
Confidence 7544
|
Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. |
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0018 Score=58.52 Aligned_cols=117 Identities=15% Similarity=0.089 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcc
Q 020573 176 TELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGS 255 (324)
Q Consensus 176 te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD 255 (324)
..-|...++.-+ ......++.+||-||..+|.....++...++++.|+|||.|+......-.-+++- .||--+.+|
T Consensus 55 RSKLaAai~~Gl-~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R---~NIiPIl~D 130 (229)
T PF01269_consen 55 RSKLAAAILKGL-ENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR---PNIIPILED 130 (229)
T ss_dssp T-HHHHHHHTT--S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS---TTEEEEES-
T ss_pred hhHHHHHHHcCc-cccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC---Cceeeeecc
Confidence 344555554433 2223446779999999999999999999988999999999997655444333332 358888999
Q ss_pred cccccc--cCCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 256 WFGKLK--DVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 256 ~~~~l~--~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
...+.. .+-+.+|+|+++= ..|.. .+-++.++..+||+||.
T Consensus 131 Ar~P~~Y~~lv~~VDvI~~DV-----------------aQp~Q-----------a~I~~~Na~~fLk~gG~ 173 (229)
T PF01269_consen 131 ARHPEKYRMLVEMVDVIFQDV-----------------AQPDQ-----------ARIAALNARHFLKPGGH 173 (229)
T ss_dssp TTSGGGGTTTS--EEEEEEE------------------SSTTH-----------HHHHHHHHHHHEEEEEE
T ss_pred CCChHHhhcccccccEEEecC-----------------CChHH-----------HHHHHHHHHhhccCCcE
Confidence 887643 2346899999951 12222 12466788889999883
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00018 Score=64.69 Aligned_cols=102 Identities=16% Similarity=0.053 Sum_probs=66.0
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNP 274 (324)
...+.||.|+|.|.++-.+...+ -.+|..||-++..++.|++.+...+ ....++++.-+.+..+. .++||+|.+.
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~--f~~VDlVEp~~~Fl~~a~~~l~~~~-~~v~~~~~~gLQ~f~P~-~~~YDlIW~Q- 129 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPV--FDEVDLVEPVEKFLEQAKEYLGKDN-PRVGEFYCVGLQDFTPE-EGKYDLIWIQ- 129 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC---SEEEEEES-HHHHHHHHHHTCCGG-CCEEEEEES-GGG-----TT-EEEEEEE-
T ss_pred CcceEEecccccchhHHHHHHHh--cCEeEEeccCHHHHHHHHHHhcccC-CCcceEEecCHhhccCC-CCcEeEEEeh-
Confidence 34689999999999998764432 2699999999999999997754311 12256666665554332 4699999993
Q ss_pred CCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 275 PYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
=+..|-.. +.+..|++.+...|+|||+
T Consensus 130 -------------W~lghLTD----------~dlv~fL~RCk~~L~~~G~ 156 (218)
T PF05891_consen 130 -------------WCLGHLTD----------EDLVAFLKRCKQALKPNGV 156 (218)
T ss_dssp -------------S-GGGS-H----------HHHHHHHHHHHHHEEEEEE
T ss_pred -------------HhhccCCH----------HHHHHHHHHHHHhCcCCcE
Confidence 12233332 4455899999999999985
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0051 Score=48.56 Aligned_cols=71 Identities=28% Similarity=0.433 Sum_probs=47.3
Q ss_pred EEEEcCCccHHHHHHHHHhCCC-cEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccc-cccCC-CCeeEEEE
Q 020573 199 WVDLGTGSGAIAIGIARVLGSK-GSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGK-LKDVE-GKLSGVVS 272 (324)
Q Consensus 199 VLDLGcGsG~iai~la~~~~p~-~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~-l~~~~-~~fDlIVs 272 (324)
++|+|||+|... .++... .. ..++|+|.++.++..++......+.. .+.+..+|.... +.... ..||++.+
T Consensus 52 ~ld~~~g~g~~~-~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~~~ 125 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLG-GRGAYVVGVDLSPEMLALARARAEGAGLG-LVDFVVADALGGVLPFEDSASFDLVIS 125 (257)
T ss_pred eEEecCCcCHHH-HHHHhC-CCCceEEEEeCCHHHHHHHHhhhhhcCCC-ceEEEEeccccCCCCCCCCCceeEEee
Confidence 999999999987 444432 22 48999999999999866554432211 167888887652 33222 37999844
|
|
| >COG1568 Predicted methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0014 Score=60.87 Aligned_cols=83 Identities=19% Similarity=0.227 Sum_probs=68.4
Q ss_pred CCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccccc-CCCCeeEE
Q 020573 192 DGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKD-VEGKLSGV 270 (324)
Q Consensus 192 ~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~-~~~~fDlI 270 (324)
.+..++.|+-+| -.-..+++++.. +...+|..|||++..+....+-++..|+.| ++.+.-|+.++++. +..+||+.
T Consensus 149 GDL~gK~I~vvG-DDDLtsia~aLt-~mpk~iaVvDIDERli~fi~k~aee~g~~~-ie~~~~Dlr~plpe~~~~kFDvf 225 (354)
T COG1568 149 GDLEGKEIFVVG-DDDLTSIALALT-GMPKRIAVVDIDERLIKFIEKVAEELGYNN-IEAFVFDLRNPLPEDLKRKFDVF 225 (354)
T ss_pred cCcCCCeEEEEc-CchhhHHHHHhc-CCCceEEEEechHHHHHHHHHHHHHhCccc-hhheeehhcccChHHHHhhCCee
Confidence 445677899999 666666766664 344689999999999999999999999865 99999999998864 45799999
Q ss_pred EEcCCCC
Q 020573 271 VSNPPYI 277 (324)
Q Consensus 271 VsNPPYi 277 (324)
+.+|||.
T Consensus 226 iTDPpeT 232 (354)
T COG1568 226 ITDPPET 232 (354)
T ss_pred ecCchhh
Confidence 9999985
|
|
| >COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0022 Score=60.22 Aligned_cols=91 Identities=22% Similarity=0.412 Sum_probs=70.8
Q ss_pred HHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccc
Q 020573 178 LMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWF 257 (324)
Q Consensus 178 ~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~ 257 (324)
.|++.+.+.+ ...+++..+|.--|-|..+..+...+++.++++|+|.++.|++.|++.+..++ +|+.++++++.
T Consensus 10 VLl~E~i~~L----~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~--~r~~~v~~~F~ 83 (314)
T COG0275 10 VLLNEVVELL----APKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD--GRVTLVHGNFA 83 (314)
T ss_pred hHHHHHHHhc----ccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC--CcEEEEeCcHH
Confidence 3555556555 33456899999999999999999998667889999999999999999988765 68999999876
Q ss_pred cccccC----CCCeeEEEEcC
Q 020573 258 GKLKDV----EGKLSGVVSNP 274 (324)
Q Consensus 258 ~~l~~~----~~~fDlIVsNP 274 (324)
+....+ .+++|.|+.+-
T Consensus 84 ~l~~~l~~~~i~~vDGiL~DL 104 (314)
T COG0275 84 NLAEALKELGIGKVDGILLDL 104 (314)
T ss_pred HHHHHHHhcCCCceeEEEEec
Confidence 532211 25788887753
|
|
| >PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0005 Score=65.21 Aligned_cols=92 Identities=21% Similarity=0.322 Sum_probs=64.3
Q ss_pred HHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccc
Q 020573 178 LMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWF 257 (324)
Q Consensus 178 ~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~ 257 (324)
.|++.+++.+ ...+++.++|.--|.|..+.++.+.+ ++++|+|+|.+++|++.|+++++.. .+++.++++++-
T Consensus 7 Vll~Evl~~L----~~~~~g~~vD~T~G~GGHS~aiL~~~-~~~~li~~DrD~~a~~~a~~~l~~~--~~r~~~~~~~F~ 79 (310)
T PF01795_consen 7 VLLKEVLEAL----NPKPGGIYVDCTFGGGGHSKAILEKL-PNGRLIGIDRDPEALERAKERLKKF--DDRFIFIHGNFS 79 (310)
T ss_dssp TTHHHHHHHH----T--TT-EEEETT-TTSHHHHHHHHT--TT-EEEEEES-HHHHHHHHCCTCCC--CTTEEEEES-GG
T ss_pred ccHHHHHHhh----CcCCCceEEeecCCcHHHHHHHHHhC-CCCeEEEecCCHHHHHHHHHHHhhc--cceEEEEeccHH
Confidence 3566666666 23456799999999999999999987 5699999999999999999887644 578999999986
Q ss_pred cccc---c--CCCCeeEEEEcCCC
Q 020573 258 GKLK---D--VEGKLSGVVSNPPY 276 (324)
Q Consensus 258 ~~l~---~--~~~~fDlIVsNPPY 276 (324)
+... . ...++|.|+.+.-+
T Consensus 80 ~l~~~l~~~~~~~~~dgiL~DLGv 103 (310)
T PF01795_consen 80 NLDEYLKELNGINKVDGILFDLGV 103 (310)
T ss_dssp GHHHHHHHTTTTS-EEEEEEE-S-
T ss_pred HHHHHHHHccCCCccCEEEEcccc
Confidence 5321 1 13589999997554
|
The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A. |
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0016 Score=62.43 Aligned_cols=68 Identities=21% Similarity=0.165 Sum_probs=52.5
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEc
Q 020573 194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN 273 (324)
Q Consensus 194 ~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsN 273 (324)
.++.++||+||++|.++..+.++ +.+|+|||..+-+ .++.. .++|..+++|-+...+. .+.+|++||+
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~r---G~~V~AVD~g~l~-----~~L~~---~~~V~h~~~d~fr~~p~-~~~vDwvVcD 277 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRR---GMFVTAVDNGPMA-----QSLMD---TGQVEHLRADGFKFRPP-RKNVDWLVCD 277 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHc---CCEEEEEechhcC-----HhhhC---CCCEEEEeccCcccCCC-CCCCCEEEEe
Confidence 46789999999999999999986 3699999966422 11221 35699999999886553 4689999996
|
|
| >PF07669 Eco57I: Eco57I restriction-modification methylase; InterPro: IPR011639 This entry contains restriction modification methylases, which in the case of endonuclease Eco57I is found adjacent to the DNA cleavage domain, which recognises asymmetric DNA sequence 5'-CTGAAG [, ] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.00039 Score=55.68 Aligned_cols=44 Identities=23% Similarity=0.391 Sum_probs=31.5
Q ss_pred CeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCC
Q 020573 266 KLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDK 323 (324)
Q Consensus 266 ~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG 323 (324)
+||+||.||||+........... .....+.|..|++.+.++| +|
T Consensus 2 kFD~VIGNPPY~~~~~~~~~~~~------------~~~~~dlY~~Fie~~~~ll--~G 45 (106)
T PF07669_consen 2 KFDVVIGNPPYIKIKSLSKKKKK------------KKKKSDLYILFIEKSLNLL--NG 45 (106)
T ss_pred CcCEEEECCCChhhccccchhhc------------ccccCcHHHHHHHHHHHHh--CC
Confidence 69999999999976643322111 1115788999999999988 66
|
The methylase causes specific methylation on A-5 on one strand, the other strand being methylated by the Eco57IB methylase []. ; GO: 0003677 DNA binding, 0003824 catalytic activity, 0006304 DNA modification |
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.00022 Score=61.08 Aligned_cols=94 Identities=14% Similarity=0.087 Sum_probs=63.3
Q ss_pred chHHHHHHHHHHHhhhcCCCCCCCeEEEEcCC-ccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCC--CcEE
Q 020573 174 PETELMVDLVSDVLVRDNDGLRDGFWVDLGTG-SGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQ--DIIE 250 (324)
Q Consensus 174 p~te~lve~l~~~l~~~~~~~~~~~VLDLGcG-sG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~--~rv~ 250 (324)
|..|.+.-.++... ....+.+|+++|.| +|.-++.+|... +...|+-.|-++++++..++....|... .++.
T Consensus 12 pseeala~~~l~~~----n~~rg~~ilelgggft~laglmia~~a-~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~ 86 (201)
T KOG3201|consen 12 PSEEALAWTILRDP----NKIRGRRILELGGGFTGLAGLMIACKA-PDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCC 86 (201)
T ss_pred ccHHHHHHHHHhch----hHHhHHHHHHhcCchhhhhhhheeeec-CCceEEEecCCHHHHHHHHHHHhcccccccceeh
Confidence 45566665555422 23456789999999 666777777765 7889999999999999888877665222 2354
Q ss_pred EEEcccccccccC-CCCeeEEEE
Q 020573 251 IRQGSWFGKLKDV-EGKLSGVVS 272 (324)
Q Consensus 251 ~~~gD~~~~l~~~-~~~fDlIVs 272 (324)
.+..++....... ...||+|++
T Consensus 87 vlrw~~~~aqsq~eq~tFDiIla 109 (201)
T KOG3201|consen 87 VLRWLIWGAQSQQEQHTFDIILA 109 (201)
T ss_pred hhHHHHhhhHHHHhhCcccEEEe
Confidence 4555544332222 248999998
|
|
| >PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0029 Score=56.13 Aligned_cols=59 Identities=14% Similarity=0.198 Sum_probs=42.8
Q ss_pred ccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 020573 172 PRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF 238 (324)
Q Consensus 172 Prp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~ 238 (324)
|.+-...|++.+.... . .++..|||.+||||..++++.+. +.+.+|+|++++.+++|++
T Consensus 173 ~~~kP~~l~~~lI~~~-t----~~gdiVlDpF~GSGTT~~aa~~l---~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 173 PTQKPVELIERLIKAS-T----NPGDIVLDPFAGSGTTAVAAEEL---GRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp TT-S-HHHHHHHHHHH-S-----TT-EEEETT-TTTHHHHHHHHT---T-EEEEEESSHHHHHHHHH
T ss_pred eecCCHHHHHHHHHhh-h----ccceeeehhhhccChHHHHHHHc---CCeEEEEeCCHHHHHHhcC
Confidence 4444556777777655 2 24679999999999999988774 4789999999999999975
|
In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B .... |
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0013 Score=63.93 Aligned_cols=101 Identities=24% Similarity=0.209 Sum_probs=77.5
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNP 274 (324)
++.+++|+|||.|.....++.. ....++|+|.++.-+..+..-....++.++-.++.+|+.+... .+..||.+-++
T Consensus 110 ~~~~~~~~~~g~~~~~~~i~~f--~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~f-edn~fd~v~~l- 185 (364)
T KOG1269|consen 110 PGSKVLDVGTGVGGPSRYIAVF--KKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPF-EDNTFDGVRFL- 185 (364)
T ss_pred ccccccccCcCcCchhHHHHHh--ccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCC-CccccCcEEEE-
Confidence 3447999999999999999885 5689999999998888888877777787777777777766432 25789988883
Q ss_pred CCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 275 PYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
++..|.|... ..++++.+.+||||+
T Consensus 186 -------------d~~~~~~~~~------------~~y~Ei~rv~kpGG~ 210 (364)
T KOG1269|consen 186 -------------EVVCHAPDLE------------KVYAEIYRVLKPGGL 210 (364)
T ss_pred -------------eecccCCcHH------------HHHHHHhcccCCCce
Confidence 4456655432 456777888999995
|
|
| >KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.00055 Score=67.87 Aligned_cols=83 Identities=19% Similarity=0.187 Sum_probs=69.3
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccccc---CCCCeeEEE
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKD---VEGKLSGVV 271 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~---~~~~fDlIV 271 (324)
.+-+|||.-++||.-++..|++++.-.+|++-|.++.+++..++|++.++..+.++..++|+....-. ....||+|=
T Consensus 109 ~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvID 188 (525)
T KOG1253|consen 109 KSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVID 188 (525)
T ss_pred CcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccceEe
Confidence 35689999999999999999998555689999999999999999999999999899999998643211 236899998
Q ss_pred EcCCCCC
Q 020573 272 SNPPYIP 278 (324)
Q Consensus 272 sNPPYi~ 278 (324)
.+ ||..
T Consensus 189 LD-PyGs 194 (525)
T KOG1253|consen 189 LD-PYGS 194 (525)
T ss_pred cC-CCCC
Confidence 87 5653
|
|
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0017 Score=58.73 Aligned_cols=72 Identities=15% Similarity=0.040 Sum_probs=52.5
Q ss_pred CeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcC
Q 020573 197 GFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (324)
Q Consensus 197 ~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNP 274 (324)
..++|+|||-|++...+-.+ .-.+++-+|.|-.|++.++.. +..++. +....+|-. .+...++++|+|++.-
T Consensus 74 p~a~diGcs~G~v~rhl~~e--~vekli~~DtS~~M~~s~~~~-qdp~i~--~~~~v~DEE-~Ldf~ens~DLiisSl 145 (325)
T KOG2940|consen 74 PTAFDIGCSLGAVKRHLRGE--GVEKLIMMDTSYDMIKSCRDA-QDPSIE--TSYFVGDEE-FLDFKENSVDLIISSL 145 (325)
T ss_pred cceeecccchhhhhHHHHhc--chhheeeeecchHHHHHhhcc-CCCceE--EEEEecchh-cccccccchhhhhhhh
Confidence 47999999999999988776 246899999999999988753 223332 455566632 2443457999999853
|
|
| >KOG4058 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0033 Score=53.22 Aligned_cols=75 Identities=31% Similarity=0.423 Sum_probs=62.1
Q ss_pred HHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccc
Q 020573 179 MVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFG 258 (324)
Q Consensus 179 lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~ 258 (324)
-++.++.++ ...+.++.+|+|+|.|.+-++.++.. -..-+|+|+++-.+..++-.+-+.|...+..|..-|.++
T Consensus 60 Qv~nVLSll----~~n~~GklvDlGSGDGRiVlaaar~g--~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK 133 (199)
T KOG4058|consen 60 QVENVLSLL----RGNPKGKLVDLGSGDGRIVLAAARCG--LRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWK 133 (199)
T ss_pred HHHHHHHHc----cCCCCCcEEeccCCCceeehhhhhhC--CCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhh
Confidence 345556666 22345789999999999999999862 357899999999999999999999999899999999987
Q ss_pred c
Q 020573 259 K 259 (324)
Q Consensus 259 ~ 259 (324)
.
T Consensus 134 ~ 134 (199)
T KOG4058|consen 134 V 134 (199)
T ss_pred c
Confidence 4
|
|
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0049 Score=57.86 Aligned_cols=59 Identities=10% Similarity=-0.010 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHH
Q 020573 176 TELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR 242 (324)
Q Consensus 176 te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~ 242 (324)
.+.|++.+.... . .+++.|||.++|||..++++.+. +.+.+|+|++++.+++|++.++.
T Consensus 194 P~~L~erlI~~~-S----~~GD~VLDPF~GSGTT~~AA~~l---gR~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 194 PEALLKRIILAS-S----NPGDIVLDPFAGSFTTGAVAKAS---GRKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred hHHHHHHHHHHh-C----CCCCEEEECCCCCcHHHHHHHHc---CCCEEEEeCCHHHHHHHHHHHHh
Confidence 355666666554 2 35779999999999999987774 47899999999999999998753
|
|
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0048 Score=56.17 Aligned_cols=64 Identities=11% Similarity=0.114 Sum_probs=48.3
Q ss_pred ccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHc
Q 020573 172 PRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRY 243 (324)
Q Consensus 172 Prp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~ 243 (324)
|.+-...|++.++... . .+++.|||.+||||..+++..+. +.+.+|+|++++..+.|.+.++..
T Consensus 145 p~~kP~~l~~~~i~~~-s----~~g~~vlDpf~Gsgtt~~aa~~~---~r~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 145 PTEKPVTSLQPLIESF-T----HPNAIVLDPFAGSGSTCVAALQS---GRRYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred CCCCcHHHHHHHHHHh-C----CCCCEEEeCCCCCCHHHHHHHHc---CCCEEEEecCHHHHHHHHHHHHHH
Confidence 3333345556555443 1 24679999999999999988774 468999999999999999988764
|
|
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0054 Score=53.95 Aligned_cols=102 Identities=15% Similarity=0.110 Sum_probs=65.8
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEc-cccccccc-------CCCC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQG-SWFGKLKD-------VEGK 266 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~g-D~~~~l~~-------~~~~ 266 (324)
++.+|||+||..|..+....+..+|++.|.|||+-.- ..+. .+.++++ |+.++... ...+
T Consensus 69 p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~-----------~p~~-Ga~~i~~~dvtdp~~~~ki~e~lp~r~ 136 (232)
T KOG4589|consen 69 PEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI-----------EPPE-GATIIQGNDVTDPETYRKIFEALPNRP 136 (232)
T ss_pred CCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec-----------cCCC-CcccccccccCCHHHHHHHHHhCCCCc
Confidence 4679999999999999999998889999999998531 1122 3666666 66554210 2358
Q ss_pred eeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCC
Q 020573 267 LSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDK 323 (324)
Q Consensus 267 fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG 323 (324)
+|+|+|+--=..++. ..+.|+- -+++....+..|...++|+|
T Consensus 137 VdvVlSDMapnaTGv------r~~Dh~~---------~i~LC~s~l~~al~~~~p~g 178 (232)
T KOG4589|consen 137 VDVVLSDMAPNATGV------RIRDHYR---------SIELCDSALLFALTLLIPNG 178 (232)
T ss_pred ccEEEeccCCCCcCc------chhhHHH---------HHHHHHHHHHHhhhhcCCCc
Confidence 999999621111110 1112211 14555566677888888888
|
|
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.007 Score=55.62 Aligned_cols=72 Identities=13% Similarity=0.112 Sum_probs=54.6
Q ss_pred CCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEE
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVS 272 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVs 272 (324)
+.+|+|+|||-==+++..... .++..++|+||+..+++....-+...+.. .++...|...... ....|+.+.
T Consensus 106 p~sVlDigCGlNPlalp~~~~-~~~a~Y~a~DID~~~ve~l~~~l~~l~~~--~~~~v~Dl~~~~~--~~~~DlaLl 177 (251)
T PF07091_consen 106 PDSVLDIGCGLNPLALPWMPE-APGATYIAYDIDSQLVEFLNAFLAVLGVP--HDARVRDLLSDPP--KEPADLALL 177 (251)
T ss_dssp -SEEEEET-TTCHHHHHTTTS-STT-EEEEEESBHHHHHHHHHHHHHTT-C--EEEEEE-TTTSHT--TSEESEEEE
T ss_pred CchhhhhhccCCceehhhccc-CCCcEEEEEeCCHHHHHHHHHHHHhhCCC--cceeEeeeeccCC--CCCcchhhH
Confidence 569999999999999987765 37789999999999999999999998865 6677778776533 246777665
|
|
| >KOG1501 consensus Arginine N-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.0039 Score=61.19 Aligned_cols=60 Identities=23% Similarity=0.341 Sum_probs=52.5
Q ss_pred CeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccc
Q 020573 197 GFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFG 258 (324)
Q Consensus 197 ~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~ 258 (324)
..+||+|||||.++...+++ + .-.|+|+|.-.-|.+.|++-..++|.+++|+++.-.-.+
T Consensus 68 v~vLdigtGTGLLSmMAvra-g-aD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrSte 127 (636)
T KOG1501|consen 68 VFVLDIGTGTGLLSMMAVRA-G-ADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTE 127 (636)
T ss_pred EEEEEccCCccHHHHHHHHh-c-CCeEEeehhhchHHHHHHHHHhcCCCccceeeeccccce
Confidence 46999999999999999987 3 457999999999999999999999999999988755433
|
|
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.0072 Score=53.83 Aligned_cols=66 Identities=14% Similarity=0.177 Sum_probs=54.0
Q ss_pred CCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcC------CCCcEEEEEccccccccc
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYG------LQDIIEIRQGSWFGKLKD 262 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~g------l~~rv~~~~gD~~~~l~~ 262 (324)
...+.|||||-|.+.+.++-.+ |+.-|.|+||--...+.-++.++.++ .-.++.+...+.+..+++
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~f-PdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn 132 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKF-PDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPN 132 (249)
T ss_pred cceEEeeccCccchhhhccccC-ccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccc
Confidence 4579999999999999999997 89999999999998888888887654 223477888877766554
|
|
| >PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.011 Score=53.95 Aligned_cols=79 Identities=19% Similarity=0.204 Sum_probs=50.1
Q ss_pred CeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHc---CC-----CCcEEEEEcccccccccCCCCee
Q 020573 197 GFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRY---GL-----QDIIEIRQGSWFGKLKDVEGKLS 268 (324)
Q Consensus 197 ~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~---gl-----~~rv~~~~gD~~~~l~~~~~~fD 268 (324)
.+|||.-+|-|.-++.+|. + +++|+++|.||....+.+.-+++. .- ..|++++++|..+.+.....+||
T Consensus 77 ~~VLDaTaGLG~Da~vlA~-~--G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~~~s~D 153 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLAS-L--GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQPDNSFD 153 (234)
T ss_dssp --EEETT-TTSHHHHHHHH-H--T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCHSS--S
T ss_pred CEEEECCCcchHHHHHHHc-c--CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhcCCCCC
Confidence 3899999999999999986 4 478999999998776666544332 11 14799999999987764457999
Q ss_pred EEEEcCCCCC
Q 020573 269 GVVSNPPYIP 278 (324)
Q Consensus 269 lIVsNPPYi~ 278 (324)
+|..+|=|-.
T Consensus 154 VVY~DPMFp~ 163 (234)
T PF04445_consen 154 VVYFDPMFPE 163 (234)
T ss_dssp EEEE--S---
T ss_pred EEEECCCCCC
Confidence 9999998854
|
; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A. |
| >KOG1227 consensus Putative methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.0011 Score=62.12 Aligned_cols=73 Identities=19% Similarity=0.184 Sum_probs=58.6
Q ss_pred CCeEEEEcCCccHHHH-HHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEE
Q 020573 196 DGFWVDLGTGSGAIAI-GIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVS 272 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai-~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVs 272 (324)
+..|+||..|.|++++ .+... ....|+|+|.+|.+++..++|++.|++.++..++.||-...- +....|-|..
T Consensus 195 ~eviVDLYAGIGYFTlpflV~a--gAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~--~~~~AdrVnL 268 (351)
T KOG1227|consen 195 GEVIVDLYAGIGYFTLPFLVTA--GAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPK--PRLRADRVNL 268 (351)
T ss_pred cchhhhhhcccceEEeehhhcc--CccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccC--ccccchheee
Confidence 4689999999999999 55553 567999999999999999999999999888888888865432 2345665544
|
|
| >KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.0063 Score=61.01 Aligned_cols=75 Identities=17% Similarity=0.081 Sum_probs=57.3
Q ss_pred CCeEEEEcCCccHHHHHHH---HHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEE
Q 020573 196 DGFWVDLGTGSGAIAIGIA---RVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVS 272 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la---~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVs 272 (324)
...|+-+|.|-|-+.-+.. +....+.++++||.+|.|+-..+. .+.....++|+++.+|+.+.-+. ..+.|++||
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~-~n~~~W~~~Vtii~~DMR~w~ap-~eq~DI~VS 445 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQN-RNFECWDNRVTIISSDMRKWNAP-REQADIIVS 445 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhh-hchhhhcCeeEEEeccccccCCc-hhhccchHH
Confidence 4578999999998765443 333356789999999999876654 66666778999999999875432 368899998
|
|
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.013 Score=54.10 Aligned_cols=79 Identities=16% Similarity=0.137 Sum_probs=55.1
Q ss_pred CCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcCC
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPP 275 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNPP 275 (324)
...|.|+|||-+-|+. .. .-+|+..|+-. + +-+++..|+.+ ++-.+++.|++|..--
T Consensus 181 ~~vIaD~GCGEakiA~---~~---~~kV~SfDL~a--------------~--~~~V~~cDm~~-vPl~d~svDvaV~CLS 237 (325)
T KOG3045|consen 181 NIVIADFGCGEAKIAS---SE---RHKVHSFDLVA--------------V--NERVIACDMRN-VPLEDESVDVAVFCLS 237 (325)
T ss_pred ceEEEecccchhhhhh---cc---ccceeeeeeec--------------C--CCceeeccccC-CcCccCcccEEEeeHh
Confidence 4589999999999887 22 25799999853 1 24556677766 4434579999988411
Q ss_pred CCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 276 YIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 276 Yi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
|+. ..+..|+.+|.+.|++||.
T Consensus 238 ---------LMg------------------tn~~df~kEa~RiLk~gG~ 259 (325)
T KOG3045|consen 238 ---------LMG------------------TNLADFIKEANRILKPGGL 259 (325)
T ss_pred ---------hhc------------------ccHHHHHHHHHHHhccCce
Confidence 111 1244689999999999994
|
|
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.0037 Score=58.69 Aligned_cols=67 Identities=19% Similarity=0.273 Sum_probs=42.6
Q ss_pred cEEEEEcccccccccC-CCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 248 IIEIRQGSWFGKLKDV-EGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 248 rv~~~~gD~~~~l~~~-~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
..+++++|..+.+..+ .++||+||+||||-........ .... . ..+=++.+..++.++.++|||||.
T Consensus 8 ~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~-------~~~~--~-~~~~~~~l~~~l~~~~rvLK~~G~ 75 (284)
T PRK11524 8 AKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGL-------IEAW--K-EDLFIDWLYEWIDECHRVLKKQGT 75 (284)
T ss_pred CCEEEeccHHHHHHhcccCcccEEEECCCcccccccccc-------cccc--c-HHHHHHHHHHHHHHHHHHhCCCcE
Confidence 3578899998854332 4689999999999642211100 0000 0 111245567899999999999994
|
|
| >KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.037 Score=53.43 Aligned_cols=124 Identities=15% Similarity=0.174 Sum_probs=78.9
Q ss_pred CCCCCCeEEEEcCCccHHHHHHHHHhCC---CcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccc--cc------
Q 020573 192 DGLRDGFWVDLGTGSGAIAIGIARVLGS---KGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFG--KL------ 260 (324)
Q Consensus 192 ~~~~~~~VLDLGcGsG~iai~la~~~~p---~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~--~l------ 260 (324)
+..++.+|||+|+..|.-++.+.+.... .+.|++-|.++.-+...++-+.+..-. ++.+...|... ..
T Consensus 152 ~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~-~~~v~~~~~~~~p~~~~~~~~ 230 (375)
T KOG2198|consen 152 GVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSP-NLLVTNHDASLFPNIYLKDGN 230 (375)
T ss_pred ccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCc-ceeeecccceeccccccccCc
Confidence 3446789999999999999888876522 238999999998888877776544322 23333333211 11
Q ss_pred ccCCCCeeEEEEcCCCCCCCCcccchhhhhccccccccc---CCC-CcHHHH-HHHHHHHhcccCCCCC
Q 020573 261 KDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALD---GGV-DGLDYL-LHLCNGTASMLKPDKW 324 (324)
Q Consensus 261 ~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~---gg~-dGl~~~-~~il~~a~~~LkpgG~ 324 (324)
......||-|+++=|+...+.+ ++.|.+--. ... -||-.+ -.|+..+.++||+||.
T Consensus 231 ~~~~~~fDrVLvDVPCS~Dgt~--------rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~ 291 (375)
T KOG2198|consen 231 DKEQLKFDRVLVDVPCSGDGTL--------RKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGR 291 (375)
T ss_pred hhhhhhcceeEEecccCCCccc--------ccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCE
Confidence 0112479999999999766433 222222111 111 234333 3789999999999994
|
|
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.0081 Score=54.03 Aligned_cols=107 Identities=18% Similarity=0.170 Sum_probs=68.8
Q ss_pred hHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEc
Q 020573 175 ETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQG 254 (324)
Q Consensus 175 ~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~g 254 (324)
....+++++.+............++||+||=+....+..... -.|+.+|+++. .-.+.+.
T Consensus 31 SSK~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s~~~~----fdvt~IDLns~----------------~~~I~qq 90 (219)
T PF11968_consen 31 SSKWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACSTSGW----FDVTRIDLNSQ----------------HPGILQQ 90 (219)
T ss_pred hhHHHHHHhhhhccccccccccceEEeecccCCCCcccccCc----eeeEEeecCCC----------------CCCceee
Confidence 345677777665421111122368999999987766665444 36999999851 1456788
Q ss_pred ccccc-cc-cCCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 255 SWFGK-LK-DVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 255 D~~~~-l~-~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
||++- ++ ...++||+|++ .-|..|-|.-..- -.++..+.++|+++|.
T Consensus 91 DFm~rplp~~~~e~FdvIs~--------------SLVLNfVP~p~~R---------G~Ml~r~~~fL~~~g~ 139 (219)
T PF11968_consen 91 DFMERPLPKNESEKFDVISL--------------SLVLNFVPDPKQR---------GEMLRRAHKFLKPPGL 139 (219)
T ss_pred ccccCCCCCCcccceeEEEE--------------EEEEeeCCCHHHH---------HHHHHHHHHHhCCCCc
Confidence 88873 33 12569999998 3344555532211 1688999999999984
|
|
| >PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2 | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.0082 Score=56.42 Aligned_cols=75 Identities=20% Similarity=0.250 Sum_probs=54.0
Q ss_pred eEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccccc-CCCCeeEEEEcCCC
Q 020573 198 FWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKD-VEGKLSGVVSNPPY 276 (324)
Q Consensus 198 ~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~-~~~~fDlIVsNPPY 276 (324)
+++||+||.|.+.+.+-+. + -..|.++|+++.|.+.-+.|.. ....+|..+.... +.+.+|+++.-||+
T Consensus 2 ~~~dlFsG~Gg~~~g~~~a-g-~~~~~a~e~~~~a~~~y~~N~~--------~~~~~Di~~~~~~~l~~~~D~l~ggpPC 71 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQA-G-FEVVWAVEIDPDACETYKANFP--------EVICGDITEIDPSDLPKDVDLLIGGPPC 71 (335)
T ss_dssp EEEEET-TTTHHHHHHHHT-T-EEEEEEEESSHHHHHHHHHHHT--------EEEESHGGGCHHHHHHHT-SEEEEE---
T ss_pred cEEEEccCccHHHHHHHhc-C-cEEEEEeecCHHHHHhhhhccc--------ccccccccccccccccccceEEEeccCC
Confidence 6899999999999999886 2 3579999999999999998864 6777887764221 11159999999999
Q ss_pred CCCCCc
Q 020573 277 IPSDDI 282 (324)
Q Consensus 277 i~~~~~ 282 (324)
-+-+..
T Consensus 72 Q~fS~a 77 (335)
T PF00145_consen 72 QGFSIA 77 (335)
T ss_dssp TTTSTT
T ss_pred ceEecc
Confidence 875543
|
1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A .... |
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.011 Score=56.58 Aligned_cols=92 Identities=16% Similarity=0.117 Sum_probs=70.6
Q ss_pred CeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcCCC
Q 020573 197 GFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPY 276 (324)
Q Consensus 197 ~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNPPY 276 (324)
...+|+|.|.|.++-.+...+ | +|-+++.+...+..++.+.. .| |+.+.||.|+..+ +-|+|+.
T Consensus 179 ~~avDvGgGiG~v~k~ll~~f-p--~ik~infdlp~v~~~a~~~~-~g----V~~v~gdmfq~~P----~~daI~m---- 242 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLSKY-P--HIKGINFDLPFVLAAAPYLA-PG----VEHVAGDMFQDTP----KGDAIWM---- 242 (342)
T ss_pred ceEEEcCCcHhHHHHHHHHhC-C--CCceeecCHHHHHhhhhhhc-CC----cceecccccccCC----CcCeEEE----
Confidence 579999999999999999976 4 58888888888877777765 44 8889999998744 4568887
Q ss_pred CCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 277 IPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 277 i~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
+=+.+| -+=+...+|++++++.|+|||.
T Consensus 243 ----------kWiLhd----------wtDedcvkiLknC~~sL~~~Gk 270 (342)
T KOG3178|consen 243 ----------KWILHD----------WTDEDCVKILKNCKKSLPPGGK 270 (342)
T ss_pred ----------Eeeccc----------CChHHHHHHHHHHHHhCCCCCE
Confidence 222222 2235667899999999999994
|
|
| >PHA01634 hypothetical protein | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.027 Score=46.66 Aligned_cols=72 Identities=11% Similarity=0.069 Sum_probs=56.4
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEc
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN 273 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsN 273 (324)
.+++|+|+|.+.|.-++.++.. ...+|++++.++...+..++|++.+.+-++.. ..++|-. .-+.||+.+.+
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~--GAK~Vva~E~~~kl~k~~een~k~nnI~DK~v-~~~eW~~----~Y~~~Di~~iD 99 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLR--GASFVVQYEKEEKLRKKWEEVCAYFNICDKAV-MKGEWNG----EYEDVDIFVMD 99 (156)
T ss_pred cCCEEEEecCCccchhhHHhhc--CccEEEEeccCHHHHHHHHHHhhhheeeecee-ecccccc----cCCCcceEEEE
Confidence 5779999999999999999886 46799999999999999999999886655332 2334543 23678887774
|
|
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.0081 Score=53.78 Aligned_cols=78 Identities=19% Similarity=0.249 Sum_probs=42.5
Q ss_pred cchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHH---hCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcE
Q 020573 173 RPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARV---LGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDII 249 (324)
Q Consensus 173 rp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~---~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv 249 (324)
-|..-...+.++-.+ ++..|+++|+-.|.-++..|.. ++++++|+|+|++....... ..+.+.+.++|
T Consensus 17 ~P~Dm~~~qeli~~~-------kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~--a~e~hp~~~rI 87 (206)
T PF04989_consen 17 YPQDMVAYQELIWEL-------KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRK--AIESHPMSPRI 87 (206)
T ss_dssp -HHHHHHHHHHHHHH---------SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S---GGGG----TTE
T ss_pred CHHHHHHHHHHHHHh-------CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchH--HHhhccccCce
Confidence 344444455444433 4679999999999988887753 45678999999964433222 22335566789
Q ss_pred EEEEcccccc
Q 020573 250 EIRQGSWFGK 259 (324)
Q Consensus 250 ~~~~gD~~~~ 259 (324)
++++||..+.
T Consensus 88 ~~i~Gds~d~ 97 (206)
T PF04989_consen 88 TFIQGDSIDP 97 (206)
T ss_dssp EEEES-SSST
T ss_pred EEEECCCCCH
Confidence 9999998753
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.085 Score=47.11 Aligned_cols=95 Identities=16% Similarity=0.122 Sum_probs=67.3
Q ss_pred chHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEE
Q 020573 174 PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQ 253 (324)
Q Consensus 174 p~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~ 253 (324)
|...-|...++.-+ .+.....+.+||=||..+|.....++... +++.|+|||.|+....-.-.-+++- +|+--+.
T Consensus 56 p~RSKLaAaIl~Gl-~~~pi~~g~~VLYLGAasGTTvSHVSDIv-~~G~iYaVEfs~R~~reLl~~a~~R---~Ni~PIL 130 (231)
T COG1889 56 PRRSKLAAAILKGL-KNFPIKEGSKVLYLGAASGTTVSHVSDIV-GEGRIYAVEFSPRPMRELLDVAEKR---PNIIPIL 130 (231)
T ss_pred cchhHHHHHHHcCc-ccCCcCCCCEEEEeeccCCCcHhHHHhcc-CCCcEEEEEecchhHHHHHHHHHhC---CCceeee
Confidence 34445566555544 33344567899999999999999999987 5889999999998765544444332 3477788
Q ss_pred cccccccc--cCCCCeeEEEEc
Q 020573 254 GSWFGKLK--DVEGKLSGVVSN 273 (324)
Q Consensus 254 gD~~~~l~--~~~~~fDlIVsN 273 (324)
+|+..+.. .+-+.+|+|+.+
T Consensus 131 ~DA~~P~~Y~~~Ve~VDviy~D 152 (231)
T COG1889 131 EDARKPEKYRHLVEKVDVIYQD 152 (231)
T ss_pred cccCCcHHhhhhcccccEEEEe
Confidence 88876532 234679999984
|
|
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.0088 Score=54.45 Aligned_cols=65 Identities=18% Similarity=0.321 Sum_probs=42.8
Q ss_pred EEEEEcccccccccC-CCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 249 IEIRQGSWFGKLKDV-EGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 249 v~~~~gD~~~~l~~~-~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
.++++||..+.+..+ .+++|+||.+|||-.... .+.-. -..+.+..+.+..++.++.++|||||+
T Consensus 2 ~~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~---------~~~~~--~~~~~~~~ew~~~~l~E~~RVLKpgg~ 67 (227)
T PRK13699 2 SRFILGNCIDVMARFPDNAVDFILTDPPYLVGFR---------DRQGR--TIAGDKTDEWLQPACNEMYRVLKKDAL 67 (227)
T ss_pred CeEEechHHHHHHhCCccccceEEeCCCcccccc---------cCCCc--ccccccHHHHHHHHHHHHHHHcCCCCE
Confidence 467889988765433 479999999999953100 00000 011233456778899999999999984
|
|
| >KOG2078 consensus tRNA modification enzyme [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.0085 Score=58.66 Aligned_cols=63 Identities=24% Similarity=0.148 Sum_probs=56.7
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCc-EEEEEccccccc
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDI-IEIRQGSWFGKL 260 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~r-v~~~~gD~~~~l 260 (324)
.+..|.|++||.|-+++.+++. +++|++-|++++++++.+.|+..+.+... ++.+..|..+.+
T Consensus 249 ~gevv~D~FaGvGPfa~Pa~kK---~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~Fl 312 (495)
T KOG2078|consen 249 PGEVVCDVFAGVGPFALPAAKK---GCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDFL 312 (495)
T ss_pred CcchhhhhhcCcCccccchhhc---CcEEEecCCCHHHHHHHHHhccccccchhheeeecccHHHHh
Confidence 4678999999999999999986 49999999999999999999999988776 999998887665
|
|
| >PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.069 Score=46.26 Aligned_cols=108 Identities=16% Similarity=0.214 Sum_probs=64.5
Q ss_pred EcCCccHHHHHHHHHhCCCcEEEEEeCCHH--HHH---HHHHHHHHcCCCCcEEE-EEccccccccc---CCCCeeEEEE
Q 020573 202 LGTGSGAIAIGIARVLGSKGSIIAVDLNPL--AAA---VAAFNAQRYGLQDIIEI-RQGSWFGKLKD---VEGKLSGVVS 272 (324)
Q Consensus 202 LGcGsG~iai~la~~~~p~~~V~gvDis~~--al~---~Ar~N~~~~gl~~rv~~-~~gD~~~~l~~---~~~~fDlIVs 272 (324)
+|=|.=.++.+|++.++...+++|+-.+.+ ..+ .+..|++.+.-.+ +.+ ..-|..+.-.. ..++||.||.
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g-~~V~~~VDat~l~~~~~~~~~~FDrIiF 81 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELG-VTVLHGVDATKLHKHFRLKNQRFDRIIF 81 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcC-CccccCCCCCcccccccccCCcCCEEEE
Confidence 455666788888888754567777665543 222 2446766552222 333 33344442221 1468999999
Q ss_pred cCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCC
Q 020573 273 NPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDK 323 (324)
Q Consensus 273 NPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG 323 (324)
|-|-+... ...-...+..+ -.+++.|++.|..+|+++|
T Consensus 82 NFPH~G~~-~~~~~~~i~~n------------r~Ll~~Ff~Sa~~~L~~~G 119 (166)
T PF10354_consen 82 NFPHVGGG-SEDGKRNIRLN------------RELLRGFFKSASQLLKPDG 119 (166)
T ss_pred eCCCCCCC-ccchhHHHHHH------------HHHHHHHHHHHHHhcCCCC
Confidence 99987521 11111222222 3677899999999999988
|
|
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.067 Score=48.83 Aligned_cols=79 Identities=15% Similarity=0.155 Sum_probs=54.5
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc--cCCCCeeEE
Q 020573 193 GLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK--DVEGKLSGV 270 (324)
Q Consensus 193 ~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~--~~~~~fDlI 270 (324)
..++..+||+|+-||.|+-.+.+. ...+|+|+|..-..+..--+| ..|+..++.-=...+. ...+..|+|
T Consensus 77 ~~k~kv~LDiGsSTGGFTd~lLq~--gAk~VyavDVG~~Ql~~kLR~------d~rV~~~E~tN~r~l~~~~~~~~~d~~ 148 (245)
T COG1189 77 DVKGKVVLDIGSSTGGFTDVLLQR--GAKHVYAVDVGYGQLHWKLRN------DPRVIVLERTNVRYLTPEDFTEKPDLI 148 (245)
T ss_pred CCCCCEEEEecCCCccHHHHHHHc--CCcEEEEEEccCCccCHhHhc------CCcEEEEecCChhhCCHHHcccCCCeE
Confidence 346789999999999999999986 457999999987666543322 3456555442222221 223578999
Q ss_pred EEcCCCCCC
Q 020573 271 VSNPPYIPS 279 (324)
Q Consensus 271 VsNPPYi~~ 279 (324)
+++--||+-
T Consensus 149 v~DvSFISL 157 (245)
T COG1189 149 VIDVSFISL 157 (245)
T ss_pred EEEeehhhH
Confidence 998777753
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.025 Score=56.66 Aligned_cols=94 Identities=15% Similarity=0.181 Sum_probs=48.5
Q ss_pred CCcccccchHHHHHHHHHHHhhhc-CCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEE---eCCHHHHHHHHHHHHH
Q 020573 167 EGVFIPRPETELMVDLVSDVLVRD-NDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAV---DLNPLAAAVAAFNAQR 242 (324)
Q Consensus 167 ~~vliPrp~te~lve~l~~~l~~~-~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gv---Dis~~al~~Ar~N~~~ 242 (324)
.|..+|.. ...+++.+.+.+ .. .....-..+||+|||+|.++..|..+ +..+..+ |..+..++.|-+
T Consensus 90 ggt~F~~G-a~~Yid~i~~~~-~~~~~~g~iR~~LDvGcG~aSF~a~l~~r---~V~t~s~a~~d~~~~qvqfale---- 160 (506)
T PF03141_consen 90 GGTMFPHG-ADHYIDQIAEMI-PLIKWGGGIRTALDVGCGVASFGAYLLER---NVTTMSFAPNDEHEAQVQFALE---- 160 (506)
T ss_pred CCccccCC-HHHHHHHHHHHh-hccccCCceEEEEeccceeehhHHHHhhC---CceEEEcccccCCchhhhhhhh----
Confidence 33444442 334566666655 21 11112236899999999999999875 2333333 333333444332
Q ss_pred cCCCCcEEEEEcccccccccCCCCeeEEEE
Q 020573 243 YGLQDIIEIRQGSWFGKLKDVEGKLSGVVS 272 (324)
Q Consensus 243 ~gl~~rv~~~~gD~~~~l~~~~~~fDlIVs 272 (324)
-|+..-+.+ -+ ..-++...+.||+|-|
T Consensus 161 RGvpa~~~~-~~--s~rLPfp~~~fDmvHc 187 (506)
T PF03141_consen 161 RGVPAMIGV-LG--SQRLPFPSNAFDMVHC 187 (506)
T ss_pred cCcchhhhh-hc--cccccCCccchhhhhc
Confidence 344321111 11 1224444578998887
|
; GO: 0008168 methyltransferase activity |
| >TIGR00675 dcm DNA-methyltransferase (dcm) | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.035 Score=52.99 Aligned_cols=73 Identities=18% Similarity=0.248 Sum_probs=53.3
Q ss_pred EEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcCCCCC
Q 020573 199 WVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIP 278 (324)
Q Consensus 199 VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNPPYi~ 278 (324)
|+||+||.|.+.+.+-+. + --.+.++|+++.+++.-+.|.. + .++.+|..+........+|+++.-||+-+
T Consensus 1 vidLF~G~GG~~~Gl~~a-G-~~~~~a~e~~~~a~~ty~~N~~-----~--~~~~~Di~~~~~~~~~~~dvl~gg~PCq~ 71 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQA-G-FKCVFASEIDKYAQKTYEANFG-----N--KVPFGDITKISPSDIPDFDILLGGFPCQP 71 (315)
T ss_pred CEEEecCccHHHHHHHHc-C-CeEEEEEeCCHHHHHHHHHhCC-----C--CCCccChhhhhhhhCCCcCEEEecCCCcc
Confidence 589999999999999765 2 2356789999999999888842 1 34456765532211246899999999876
Q ss_pred CC
Q 020573 279 SD 280 (324)
Q Consensus 279 ~~ 280 (324)
-+
T Consensus 72 fS 73 (315)
T TIGR00675 72 FS 73 (315)
T ss_pred cc
Confidence 54
|
All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.038 Score=53.02 Aligned_cols=77 Identities=19% Similarity=0.225 Sum_probs=57.5
Q ss_pred CeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccccc-CCC-CeeEEEEcC
Q 020573 197 GFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKD-VEG-KLSGVVSNP 274 (324)
Q Consensus 197 ~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~-~~~-~fDlIVsNP 274 (324)
-+++||+||.|.+.+.+... + -.-+.++|+++.+++.-+.|... ..+..+|..+.... ... .+|+|+.-|
T Consensus 4 ~~~idLFsG~GG~~lGf~~a-g-f~~~~a~Eid~~a~~ty~~n~~~------~~~~~~di~~~~~~~~~~~~~DvligGp 75 (328)
T COG0270 4 MKVIDLFAGIGGLSLGFEEA-G-FEIVFANEIDPPAVATYKANFPH------GDIILGDIKELDGEALRKSDVDVLIGGP 75 (328)
T ss_pred ceEEeeccCCchHHHHHHhc-C-CeEEEEEecCHHHHHHHHHhCCC------CceeechHhhcChhhccccCCCEEEeCC
Confidence 47999999999999988875 2 35799999999999988888542 45556666543322 112 799999999
Q ss_pred CCCCCCC
Q 020573 275 PYIPSDD 281 (324)
Q Consensus 275 PYi~~~~ 281 (324)
|+-+-+.
T Consensus 76 PCQ~FS~ 82 (328)
T COG0270 76 PCQDFSI 82 (328)
T ss_pred CCcchhh
Confidence 9976543
|
|
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.026 Score=52.30 Aligned_cols=107 Identities=16% Similarity=0.197 Sum_probs=63.5
Q ss_pred CCCCCeEEEEcCCccHHH-HHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCC----------------C---------
Q 020573 193 GLRDGFWVDLGTGSGAIA-IGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGL----------------Q--------- 246 (324)
Q Consensus 193 ~~~~~~VLDLGcGsG~ia-i~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl----------------~--------- 246 (324)
..++.++||+|||+-..- +.++..+ .+|+..|..+...+..++-++.-+- .
T Consensus 54 ~~~g~~llDiGsGPtiy~~lsa~~~f---~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~ 130 (256)
T PF01234_consen 54 GVKGETLLDIGSGPTIYQLLSACEWF---EEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEK 130 (256)
T ss_dssp SS-EEEEEEES-TT--GGGTTGGGTE---EEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHH
T ss_pred CcCCCEEEEeCCCcHHHhhhhHHHhh---cceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHH
Confidence 345678999999985543 3333433 5899999999988877665543221 0
Q ss_pred --CcE-EEEEcccccccc--c---CCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcc
Q 020573 247 --DII-EIRQGSWFGKLK--D---VEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASM 318 (324)
Q Consensus 247 --~rv-~~~~gD~~~~l~--~---~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~ 318 (324)
..| +++..|..+.-+ . ..++||+|++- --+... -.-++.|+..++...++
T Consensus 131 lR~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~---------fcLE~a-------------~~d~~~y~~al~ni~~l 188 (256)
T PF01234_consen 131 LRRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISS---------FCLESA-------------CKDLDEYRRALRNISSL 188 (256)
T ss_dssp HHHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEE---------SSHHHH--------------SSHHHHHHHHHHHHTT
T ss_pred HHHhhceEEEeeccCCCCCCccccCccchhhhhhh---------HHHHHH-------------cCCHHHHHHHHHHHHHH
Confidence 113 366777766322 1 12359998882 111111 11267899999999999
Q ss_pred cCCCCC
Q 020573 319 LKPDKW 324 (324)
Q Consensus 319 LkpgG~ 324 (324)
|||||.
T Consensus 189 LkpGG~ 194 (256)
T PF01234_consen 189 LKPGGH 194 (256)
T ss_dssp EEEEEE
T ss_pred cCCCcE
Confidence 999994
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >PRK10458 DNA cytosine methylase; Provisional | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.19 Score=50.67 Aligned_cols=81 Identities=14% Similarity=0.030 Sum_probs=55.4
Q ss_pred CCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccc---------------
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKL--------------- 260 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l--------------- 260 (324)
.-+++||+||.|.+.+.+-.. ....|.++|+++.|.+.-+.|.... .....+.+|..+..
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~a--G~~~v~a~Eid~~A~~TY~~N~~~~---p~~~~~~~DI~~i~~~~~~~~~~~~~~~~ 162 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAI--GGQCVFTSEWNKHAVRTYKANWYCD---PATHRFNEDIRDITLSHKEGVSDEEAAEH 162 (467)
T ss_pred CceEEEeCcCccHHHHHHHHc--CCEEEEEEechHHHHHHHHHHcCCC---CccceeccChhhCccccccccchhhhhhh
Confidence 458999999999999999664 3346899999999999888874211 11333445544321
Q ss_pred -ccCCCCeeEEEEcCCCCCCCC
Q 020573 261 -KDVEGKLSGVVSNPPYIPSDD 281 (324)
Q Consensus 261 -~~~~~~fDlIVsNPPYi~~~~ 281 (324)
......+|+++.-||+-+-+.
T Consensus 163 ~~~~~p~~DvL~gGpPCQ~FS~ 184 (467)
T PRK10458 163 IRQHIPDHDVLLAGFPCQPFSL 184 (467)
T ss_pred hhccCCCCCEEEEcCCCCccch
Confidence 001136899999999876543
|
|
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.0042 Score=55.48 Aligned_cols=41 Identities=22% Similarity=0.280 Sum_probs=35.2
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF 238 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~ 238 (324)
.+.++||+|.|.|-++..++-.+ .+|+|.|+|..|....++
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~f---eevyATElS~tMr~rL~k 152 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPTF---EEVYATELSWTMRDRLKK 152 (288)
T ss_pred CCeeEEeccCCCcchhhhhcchH---HHHHHHHhhHHHHHHHhh
Confidence 45799999999999999999887 579999999988776543
|
|
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.029 Score=52.35 Aligned_cols=92 Identities=16% Similarity=0.081 Sum_probs=65.0
Q ss_pred CCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcCC
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPP 275 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNPP 275 (324)
+..++|.|||.|-.... .|...++|.|++...+..|++- +......+|+.+. +.....||.+++
T Consensus 46 gsv~~d~gCGngky~~~-----~p~~~~ig~D~c~~l~~~ak~~-------~~~~~~~ad~l~~-p~~~~s~d~~ls--- 109 (293)
T KOG1331|consen 46 GSVGLDVGCGNGKYLGV-----NPLCLIIGCDLCTGLLGGAKRS-------GGDNVCRADALKL-PFREESFDAALS--- 109 (293)
T ss_pred cceeeecccCCcccCcC-----CCcceeeecchhhhhccccccC-------CCceeehhhhhcC-CCCCCccccchh---
Confidence 56899999999976531 2667899999999888877742 2126777887763 333568998877
Q ss_pred CCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCC
Q 020573 276 YIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDK 323 (324)
Q Consensus 276 Yi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG 323 (324)
...++++....++. .++++..+.|+|||
T Consensus 110 ---iavihhlsT~~RR~-----------------~~l~e~~r~lrpgg 137 (293)
T KOG1331|consen 110 ---IAVIHHLSTRERRE-----------------RALEELLRVLRPGG 137 (293)
T ss_pred ---hhhhhhhhhHHHHH-----------------HHHHHHHHHhcCCC
Confidence 23444555444332 68889999999998
|
|
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=94.65 E-value=0.11 Score=48.28 Aligned_cols=62 Identities=18% Similarity=0.153 Sum_probs=40.2
Q ss_pred CeEEEEcCCcc--HHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccc
Q 020573 197 GFWVDLGTGSG--AIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGK 259 (324)
Q Consensus 197 ~~VLDLGcGsG--~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~ 259 (324)
...||||||-- ...-.+|+...|+++|+=||++|..+..++.-+..+.- .+..++++|+.++
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~-g~t~~v~aD~r~p 133 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPR-GRTAYVQADLRDP 133 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TT-SEEEEEE--TT-H
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCC-ccEEEEeCCCCCH
Confidence 37999999932 23445666667999999999999999999987765431 2489999999875
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.14 Score=48.69 Aligned_cols=40 Identities=15% Similarity=0.150 Sum_probs=30.4
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAA 237 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar 237 (324)
...+||-.|||.|.++..+|.. +. .+-|-|.|--|+-...
T Consensus 150 ~ki~iLvPGaGlGRLa~dla~~-G~--~~qGNEfSy~Mli~S~ 189 (369)
T KOG2798|consen 150 TKIRILVPGAGLGRLAYDLACL-GF--KCQGNEFSYFMLICSS 189 (369)
T ss_pred cCceEEecCCCchhHHHHHHHh-cc--cccccHHHHHHHHHHH
Confidence 3568999999999999999997 34 4556688777765443
|
|
| >KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.79 E-value=0.2 Score=45.95 Aligned_cols=78 Identities=15% Similarity=0.111 Sum_probs=55.4
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc--cCCCCeeEE
Q 020573 193 GLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK--DVEGKLSGV 270 (324)
Q Consensus 193 ~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~--~~~~~fDlI 270 (324)
..++.+||=||+++|..-..++...+|..-|+|||.|+.+=...-..+++. .+|--+.-|+..+.+ .+-+-+|+|
T Consensus 154 ikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR---tNiiPIiEDArhP~KYRmlVgmVDvI 230 (317)
T KOG1596|consen 154 IKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR---TNIIPIIEDARHPAKYRMLVGMVDVI 230 (317)
T ss_pred ecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc---CCceeeeccCCCchheeeeeeeEEEE
Confidence 456789999999999999999998899999999999986533332222211 236666677765432 134578999
Q ss_pred EEc
Q 020573 271 VSN 273 (324)
Q Consensus 271 VsN 273 (324)
+++
T Consensus 231 FaD 233 (317)
T KOG1596|consen 231 FAD 233 (317)
T ss_pred ecc
Confidence 985
|
|
| >KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=93.77 E-value=0.12 Score=50.45 Aligned_cols=95 Identities=16% Similarity=0.300 Sum_probs=67.1
Q ss_pred HHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHc-------CC-CCc
Q 020573 177 ELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRY-------GL-QDI 248 (324)
Q Consensus 177 e~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~-------gl-~~r 248 (324)
|...+++.... .+....+.+...|+|.|.|.....+|... ....=+|+++....-+.|..|.+.+ |- .+.
T Consensus 175 E~~~~ql~si~-dEl~~g~~D~F~DLGSGVGqlv~~~aa~a-~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~ 252 (419)
T KOG3924|consen 175 ETQLEQLRSIV-DELKLGPADVFMDLGSGVGQLVCFVAAYA-GCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNK 252 (419)
T ss_pred hhhHHHHHHHH-HHhccCCCCcccCCCcccchhhHHHHHhh-ccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCc
Confidence 44445555544 33344567789999999999999888864 4567789999988888887776432 33 456
Q ss_pred EEEEEcccccccc--cCCCCeeEEEEc
Q 020573 249 IEIRQGSWFGKLK--DVEGKLSGVVSN 273 (324)
Q Consensus 249 v~~~~gD~~~~l~--~~~~~fDlIVsN 273 (324)
++.+++++..+-. .+....++|++|
T Consensus 253 ~~~i~gsf~~~~~v~eI~~eatvi~vN 279 (419)
T KOG3924|consen 253 IETIHGSFLDPKRVTEIQTEATVIFVN 279 (419)
T ss_pred eeecccccCCHHHHHHHhhcceEEEEe
Confidence 8999999876421 223468899997
|
|
| >KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=93.73 E-value=0.093 Score=47.74 Aligned_cols=99 Identities=27% Similarity=0.299 Sum_probs=64.2
Q ss_pred CeEEEEcCCccHHHHHHHHHhCC----C----cEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccc------cc
Q 020573 197 GFWVDLGTGSGAIAIGIARVLGS----K----GSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKL------KD 262 (324)
Q Consensus 197 ~~VLDLGcGsG~iai~la~~~~p----~----~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l------~~ 262 (324)
.+++|||...|..+..+++++.. . .+|++||+.+-+ -++ .|.-+++|....- .+
T Consensus 43 ~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma-----------PI~-GV~qlq~DIT~~stae~Ii~h 110 (294)
T KOG1099|consen 43 KRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA-----------PIE-GVIQLQGDITSASTAEAIIEH 110 (294)
T ss_pred hHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC-----------ccC-ceEEeecccCCHhHHHHHHHH
Confidence 48999999999999999987632 1 239999997532 233 3888999987642 22
Q ss_pred C-CCCeeEEEEcC-CCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCC
Q 020573 263 V-EGKLSGVVSNP-PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDK 323 (324)
Q Consensus 263 ~-~~~fDlIVsNP-PYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG 323 (324)
+ .++.|+|||+- |=+. .++.+. |+.. -+++...+.-+..+|||||
T Consensus 111 fggekAdlVvcDGAPDvT--GlHd~D-Ey~Q-------------~qLllaAl~i~t~Vlk~Gg 157 (294)
T KOG1099|consen 111 FGGEKADLVVCDGAPDVT--GLHDLD-EYVQ-------------AQLLLAALNIATCVLKPGG 157 (294)
T ss_pred hCCCCccEEEeCCCCCcc--ccccHH-HHHH-------------HHHHHHHHHHHhheecCCC
Confidence 2 24899999962 2110 111111 1111 2344566788889999998
|
|
| >KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.68 E-value=0.34 Score=44.66 Aligned_cols=75 Identities=19% Similarity=0.226 Sum_probs=50.6
Q ss_pred CCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHc-----CCCCcEEEEEccccccccc--CCCC-e
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRY-----GLQDIIEIRQGSWFGKLKD--VEGK-L 267 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~-----gl~~rv~~~~gD~~~~l~~--~~~~-f 267 (324)
..+||++|+|+|.-++.+|... .++|+-.|.. ..+...+.|...+ ++...+.+..-+|.+.+.. .... |
T Consensus 87 ~~~vlELGsGtglvG~~aa~~~--~~~v~ltD~~-~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~ 163 (248)
T KOG2793|consen 87 YINVLELGSGTGLVGILAALLL--GAEVVLTDLP-KVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPF 163 (248)
T ss_pred ceeEEEecCCccHHHHHHHHHh--cceeccCCch-hhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcc
Confidence 4579999999999999888864 5889999985 4555555554333 3333577777777664431 1234 8
Q ss_pred eEEEEc
Q 020573 268 SGVVSN 273 (324)
Q Consensus 268 DlIVsN 273 (324)
|+|++-
T Consensus 164 Dlilas 169 (248)
T KOG2793|consen 164 DLILAS 169 (248)
T ss_pred cEEEEe
Confidence 988873
|
|
| >PTZ00357 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=93.66 E-value=0.27 Score=51.27 Aligned_cols=75 Identities=23% Similarity=0.146 Sum_probs=50.8
Q ss_pred eEEEEcCCccHHHHH---HHHHhCCCcEEEEEeCCHHHHHHHHHHHHH-cCC-------CCcEEEEEccccccccc----
Q 020573 198 FWVDLGTGSGAIAIG---IARVLGSKGSIIAVDLNPLAAAVAAFNAQR-YGL-------QDIIEIRQGSWFGKLKD---- 262 (324)
Q Consensus 198 ~VLDLGcGsG~iai~---la~~~~p~~~V~gvDis~~al~~Ar~N~~~-~gl-------~~rv~~~~gD~~~~l~~---- 262 (324)
.|+-+|+|-|-+--. .++..+-+.+|++||.|+.++.+.+.+..+ ... .++|+++.+|+.+.-..
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~ 782 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG 782 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence 589999999976544 344444467999999997766555555322 122 34699999999774221
Q ss_pred ------CCCCeeEEEE
Q 020573 263 ------VEGKLSGVVS 272 (324)
Q Consensus 263 ------~~~~fDlIVs 272 (324)
..+++|+|||
T Consensus 783 s~~~P~~~gKaDIVVS 798 (1072)
T PTZ00357 783 SLTLPADFGLCDLIVS 798 (1072)
T ss_pred cccccccccccceehH
Confidence 1147999998
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.59 E-value=0.37 Score=46.43 Aligned_cols=69 Identities=13% Similarity=0.179 Sum_probs=48.4
Q ss_pred CCCCCeEEEEcCC-ccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEc---ccccccccCCCCee
Q 020573 193 GLRDGFWVDLGTG-SGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQG---SWFGKLKDVEGKLS 268 (324)
Q Consensus 193 ~~~~~~VLDLGcG-sG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~g---D~~~~l~~~~~~fD 268 (324)
..++++|+=.|+| .|.+++.+|+.. .++|+++|.+++-.+.|++- |. -.++.+ |..+.+ .+.||
T Consensus 164 ~~pG~~V~I~G~GGlGh~avQ~Aka~--ga~Via~~~~~~K~e~a~~l----GA---d~~i~~~~~~~~~~~---~~~~d 231 (339)
T COG1064 164 VKPGKWVAVVGAGGLGHMAVQYAKAM--GAEVIAITRSEEKLELAKKL----GA---DHVINSSDSDALEAV---KEIAD 231 (339)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHc--CCeEEEEeCChHHHHHHHHh----CC---cEEEEcCCchhhHHh---HhhCc
Confidence 3456787777776 678999999986 39999999999999988864 32 233332 333322 23599
Q ss_pred EEEEc
Q 020573 269 GVVSN 273 (324)
Q Consensus 269 lIVsN 273 (324)
+|+.-
T Consensus 232 ~ii~t 236 (339)
T COG1064 232 AIIDT 236 (339)
T ss_pred EEEEC
Confidence 98873
|
|
| >KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=93.47 E-value=0.24 Score=48.20 Aligned_cols=86 Identities=15% Similarity=0.178 Sum_probs=70.9
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccc-cccCCCCeeEEEE
Q 020573 194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGK-LKDVEGKLSGVVS 272 (324)
Q Consensus 194 ~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~-l~~~~~~fDlIVs 272 (324)
.++.+|+|.||-.|.-++.+|......++++|+|.+.+-.+..++-+...|... ++...+|+... .+.--..+-.|+.
T Consensus 212 ~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~~~-~~~~~~df~~t~~~~~~~~v~~iL~ 290 (413)
T KOG2360|consen 212 RPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGVSI-VESVEGDFLNTATPEKFRDVTYILV 290 (413)
T ss_pred CCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCCCc-cccccccccCCCCcccccceeEEEe
Confidence 356899999999999999999887668899999999999999999999998865 77789998773 2221245778999
Q ss_pred cCCCCCCC
Q 020573 273 NPPYIPSD 280 (324)
Q Consensus 273 NPPYi~~~ 280 (324)
+|+...+.
T Consensus 291 DpscSgSg 298 (413)
T KOG2360|consen 291 DPSCSGSG 298 (413)
T ss_pred CCCCCCCc
Confidence 99997655
|
|
| >COG1565 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.28 E-value=0.41 Score=46.36 Aligned_cols=67 Identities=19% Similarity=0.186 Sum_probs=48.2
Q ss_pred HHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHh---CC----CcEEEEEeCCHHHHHHHHHHHHHcC
Q 020573 177 ELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVL---GS----KGSIIAVDLNPLAAAVAAFNAQRYG 244 (324)
Q Consensus 177 e~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~---~p----~~~V~gvDis~~al~~Ar~N~~~~g 244 (324)
|++..++.+.+ +......+-.++++|.|.|.++.-+.+.. .| ..++.-||.|++..+.-+++++...
T Consensus 60 ella~~~~~~w-q~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~~ 133 (370)
T COG1565 60 ELLAEQFLQLW-QELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKATE 133 (370)
T ss_pred HHHHHHHHHHH-HHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhccc
Confidence 45555555555 33333345689999999999998877654 22 5689999999999888888877553
|
|
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.05 E-value=0.22 Score=44.30 Aligned_cols=108 Identities=18% Similarity=0.067 Sum_probs=65.3
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHH----HHHHHHHHHHH--cCCCCcEEEEEcccccccccCCCCee
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPL----AAAVAAFNAQR--YGLQDIIEIRQGSWFGKLKDVEGKLS 268 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~----al~~Ar~N~~~--~gl~~rv~~~~gD~~~~l~~~~~~fD 268 (324)
++.+|+|+--|.|.++..++...++++.|+++--.+. ..+..+.|... .... +++.+-.+..... ..+..|
T Consensus 48 pg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~a-N~e~~~~~~~A~~--~pq~~d 124 (238)
T COG4798 48 PGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYA-NVEVIGKPLVALG--APQKLD 124 (238)
T ss_pred CCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhh-hhhhhCCcccccC--CCCccc
Confidence 5679999999999999999999999999998764433 11223333221 1222 2555555544433 235677
Q ss_pred EEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 269 GVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 269 lIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
++..|-=|+.- +..... -.....+...+.+.|||||+
T Consensus 125 ~~~~~~~yhdm---------------h~k~i~----~~~A~~vna~vf~~LKPGGv 161 (238)
T COG4798 125 LVPTAQNYHDM---------------HNKNIH----PATAAKVNAAVFKALKPGGV 161 (238)
T ss_pred ccccchhhhhh---------------hccccC----cchHHHHHHHHHHhcCCCcE
Confidence 77776555421 111111 11223566778899999995
|
|
| >KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.98 E-value=0.26 Score=46.47 Aligned_cols=108 Identities=15% Similarity=0.128 Sum_probs=80.3
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHc--CCC-CcEEEEEcccccccccC-CCCeeE
Q 020573 194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRY--GLQ-DIIEIRQGSWFGKLKDV-EGKLSG 269 (324)
Q Consensus 194 ~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~--gl~-~rv~~~~gD~~~~l~~~-~~~fDl 269 (324)
..+++++-+|-|-|......+++ ..-.+++-+|++...++..++..... |.+ .+|.++-||-+..++.. .++||+
T Consensus 120 ~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dV 198 (337)
T KOG1562|consen 120 PNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDV 198 (337)
T ss_pred CCCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceE
Confidence 45679999999999999888887 34568999999999999999887643 332 46999999998876654 679999
Q ss_pred EEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 270 VVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 270 IVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
|+.+ +++. ..+.+ -.+.+.+++...+.||+||+
T Consensus 199 ii~d-----ssdp-vgpa~----------------~lf~~~~~~~v~~aLk~dgv 231 (337)
T KOG1562|consen 199 IITD-----SSDP-VGPAC----------------ALFQKPYFGLVLDALKGDGV 231 (337)
T ss_pred EEEe-----cCCc-cchHH----------------HHHHHHHHHHHHHhhCCCcE
Confidence 9984 1111 11111 12345788888999999985
|
|
| >PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function | Back alignment and domain information |
|---|
Probab=92.80 E-value=0.3 Score=44.92 Aligned_cols=47 Identities=21% Similarity=0.251 Sum_probs=37.1
Q ss_pred CCeEEEEcCCccHHHHHHHHHhCC-------CcEEEEEeCCHHHHHHHHHHHHH
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLGS-------KGSIIAVDLNPLAAAVAAFNAQR 242 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~p-------~~~V~gvDis~~al~~Ar~N~~~ 242 (324)
+-+|+|+|.|+|.++.-+.+.+.. ..+++-||.|+.+.+.-++++..
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 368999999999999999987742 24899999999998888887754
|
; PDB: 4F3N_A 1ZKD_B. |
| >PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre | Back alignment and domain information |
|---|
Probab=92.02 E-value=2.3 Score=36.72 Aligned_cols=85 Identities=19% Similarity=0.190 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcc
Q 020573 176 TELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGS 255 (324)
Q Consensus 176 te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD 255 (324)
.+.+++.+.+.. ....+|+=+||=|-...+.- ...++.+++-.|++..-- ..+ ++ +|+.=|
T Consensus 12 ~~~l~~~l~~~~------~~~~~iaclstPsl~~~l~~--~~~~~~~~~Lle~D~RF~--------~~~--~~-~F~fyD 72 (162)
T PF10237_consen 12 AEFLARELLDGA------LDDTRIACLSTPSLYEALKK--ESKPRIQSFLLEYDRRFE--------QFG--GD-EFVFYD 72 (162)
T ss_pred HHHHHHHHHHhc------CCCCEEEEEeCcHHHHHHHh--hcCCCccEEEEeecchHH--------hcC--Cc-ceEECC
Confidence 445555555433 13468999999887777665 123667899999996432 122 22 455555
Q ss_pred cccccc---cCCCCeeEEEEcCCCCCC
Q 020573 256 WFGKLK---DVEGKLSGVVSNPPYIPS 279 (324)
Q Consensus 256 ~~~~l~---~~~~~fDlIVsNPPYi~~ 279 (324)
..++.. .+.++||+||.+|||...
T Consensus 73 ~~~p~~~~~~l~~~~d~vv~DPPFl~~ 99 (162)
T PF10237_consen 73 YNEPEELPEELKGKFDVVVIDPPFLSE 99 (162)
T ss_pred CCChhhhhhhcCCCceEEEECCCCCCH
Confidence 555432 235799999999999643
|
This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ). |
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=91.95 E-value=0.6 Score=49.01 Aligned_cols=106 Identities=14% Similarity=0.186 Sum_probs=65.2
Q ss_pred CCeEEEEcCCccHHHHHHHHHh------CC-----CcEEEEEeCCH---HHHHHH-----------HHHHHH-----cCC
Q 020573 196 DGFWVDLGTGSGAIAIGIARVL------GS-----KGSIIAVDLNP---LAAAVA-----------AFNAQR-----YGL 245 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~------~p-----~~~V~gvDis~---~al~~A-----------r~N~~~-----~gl 245 (324)
.-+|+|+|-|+|...+...+.+ .+ ..+++++|..| +-+..+ ++-.+. .|+
T Consensus 58 ~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~ 137 (662)
T PRK01747 58 RFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGC 137 (662)
T ss_pred cEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCc
Confidence 3589999999999887777655 12 35899999754 222222 222211 122
Q ss_pred ------CC--cEEEEEcccccccccCCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhc
Q 020573 246 ------QD--IIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTAS 317 (324)
Q Consensus 246 ------~~--rv~~~~gD~~~~l~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~ 317 (324)
.+ +++++.||+.+.+..+..++|+++.++ |.|... ++. |. ..++...++
T Consensus 138 ~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~-FsP~~n-----p~~--W~---------------~~~~~~l~~ 194 (662)
T PRK01747 138 HRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDG-FAPAKN-----PDM--WS---------------PNLFNALAR 194 (662)
T ss_pred eEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCC-CCCccC-----hhh--cc---------------HHHHHHHHH
Confidence 12 355778998887766556799999973 333222 111 21 146777788
Q ss_pred ccCCCCC
Q 020573 318 MLKPDKW 324 (324)
Q Consensus 318 ~LkpgG~ 324 (324)
+++|||.
T Consensus 195 ~~~~~~~ 201 (662)
T PRK01747 195 LARPGAT 201 (662)
T ss_pred HhCCCCE
Confidence 8888874
|
|
| >PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [] | Back alignment and domain information |
|---|
Probab=91.81 E-value=0.26 Score=39.62 Aligned_cols=32 Identities=22% Similarity=0.223 Sum_probs=26.1
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLN 229 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis 229 (324)
+....+|+|||+|.+.--|.++ +-..+|+|.-
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~E---Gy~G~GiD~R 89 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSE---GYPGWGIDAR 89 (112)
T ss_pred CCCceEEccCCchHHHHHHHhC---CCCccccccc
Confidence 3457999999999999888876 3678899874
|
; GO: 0008168 methyltransferase activity |
| >COG4889 Predicted helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.66 E-value=0.35 Score=51.73 Aligned_cols=155 Identities=17% Similarity=0.177 Sum_probs=82.2
Q ss_pred cccccchHHHHHHHHHHHhhh---cCCCCCCCeEEEEcCCccHHHHHHHHHhCC--------CcEEEEEeCCHHHHHHHH
Q 020573 169 VFIPRPETELMVDLVSDVLVR---DNDGLRDGFWVDLGTGSGAIAIGIARVLGS--------KGSIIAVDLNPLAAAVAA 237 (324)
Q Consensus 169 vliPrp~te~lve~l~~~l~~---~~~~~~~~~VLDLGcGsG~iai~la~~~~p--------~~~V~gvDis~~al~~Ar 237 (324)
|+.|-.....++..+-..+.. ..-...+.+|||.++|||.+...+.+.+-. ....+|.||---+..+|.
T Consensus 816 VyTPiEVVDFIlra~d~vlkkHFg~~l~d~~vhilDpFtGTGtFi~RlL~alIs~edl~rKf~~eLhA~eIvLLsYYIAa 895 (1518)
T COG4889 816 VYTPIEVVDFILRATDDVLKKHFGTDLNDQSVHILDPFTGTGTFIVRLLSALISDEDLKRKFQKELHAFEIVLLSYYIAA 895 (1518)
T ss_pred eecchhHhhHHHHhcchHHHHHhCCCcccCCeeeecCCCCccHHHHHHHHHhcCHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 566765545554433333211 111234568999999999988776543210 236788888777778888
Q ss_pred HHHHHc--CCCCcE----EEEEcccccccc------------------cCCCCeeEEEEcCCCCCCCCc-ccchhhhhcc
Q 020573 238 FNAQRY--GLQDII----EIRQGSWFGKLK------------------DVEGKLSGVVSNPPYIPSDDI-SGLQVEVGKH 292 (324)
Q Consensus 238 ~N~~~~--gl~~rv----~~~~gD~~~~l~------------------~~~~~fDlIVsNPPYi~~~~~-~~l~~ev~~~ 292 (324)
-|++.. ++.... .+...|-|+.++ +..-+.-+|+.||||.....- +.....+ .|
T Consensus 896 iNIe~t~~~~~gd~~~F~giaLtDtf~~~Eed~~d~~~f~~n~erlkrq~~ipI~VIiGNPPYS~gqks~ndnn~nl-~y 974 (1518)
T COG4889 896 INIEQTAQNRDGDLKNFKGIALTDTFDYLEEDTLDGDIFGYNNERLKRQKEIPIRVIIGNPPYSAGQKSENDNNQNL-SY 974 (1518)
T ss_pred hhHHHHhhhhcCCcccCCCceecchhhhhccccccccccCccHHHHHhhcCCceEEEeCCCCCcccccCcCcccccc-cc
Confidence 888642 111100 112222222111 112257899999999754321 1111111 11
Q ss_pred c--------ccccc--c-CCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 293 E--------PRLAL--D-GGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 293 e--------P~~aL--~-gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
. -...- . -...-.|-|-+.++-|.+.++..|+
T Consensus 975 pkLd~rv~~sy~k~STA~nknsl~Dsyira~RwasDri~d~GV 1017 (1518)
T COG4889 975 PKLDKRVYESYGKNSTATNKNSLRDSYIRAIRWASDRIKDNGV 1017 (1518)
T ss_pred chHHHHHHHHHhccchhhcccchHHHHHHHHHHHhhhcccCce
Confidence 1 10000 0 0122356677788888899988885
|
|
| >KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=90.87 E-value=0.79 Score=44.73 Aligned_cols=42 Identities=19% Similarity=0.069 Sum_probs=35.7
Q ss_pred CCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHH
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFN 239 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N 239 (324)
-+.++|+|.|-|.++..++-.+ +-.|.|||-|..+.+.|++-
T Consensus 154 i~~vvD~GaG~G~LSr~lSl~y--~lsV~aIegsq~~~~ra~rL 195 (476)
T KOG2651|consen 154 IDQVVDVGAGQGHLSRFLSLGY--GLSVKAIEGSQRLVERAQRL 195 (476)
T ss_pred CCeeEEcCCCchHHHHHHhhcc--CceEEEeccchHHHHHHHHH
Confidence 4589999999999999999875 68999999998877776654
|
|
| >COG4301 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.87 E-value=3.5 Score=38.25 Aligned_cols=88 Identities=14% Similarity=0.103 Sum_probs=58.4
Q ss_pred ccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCC---CcEEEEEeCCHHHHHHHHHHHHHcCCCCc
Q 020573 172 PRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGS---KGSIIAVDLNPLAAAVAAFNAQRYGLQDI 248 (324)
Q Consensus 172 Prp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p---~~~V~gvDis~~al~~Ar~N~~~~gl~~r 248 (324)
-|-+++.+...+.+.. ....+...+|+|+|+-.-+..+...+.+ -.+.+.+|+|...+.-..+-+...-..-.
T Consensus 59 TRtEaaIl~~~a~Eia----~~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~ 134 (321)
T COG4301 59 TRTEAAILQARAAEIA----SITGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLE 134 (321)
T ss_pred chhHHHHHHHHHHHHH----HhhCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCe
Confidence 3667777777666655 2224668999999999888777766522 26899999999887655444433322223
Q ss_pred EEEEEcccccccccC
Q 020573 249 IEIRQGSWFGKLKDV 263 (324)
Q Consensus 249 v~~~~gD~~~~l~~~ 263 (324)
+.-+.+|+...+..+
T Consensus 135 v~~l~~~~~~~La~~ 149 (321)
T COG4301 135 VNALCGDYELALAEL 149 (321)
T ss_pred EeehhhhHHHHHhcc
Confidence 677788877665543
|
|
| >PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function | Back alignment and domain information |
|---|
Probab=89.91 E-value=0.98 Score=37.64 Aligned_cols=55 Identities=18% Similarity=0.207 Sum_probs=34.4
Q ss_pred EEcCCcc--HHHHHHH-HHhCCCcEEEEEeCCHHHHHHHHHH--HHHcCCCCcEEEEEcc
Q 020573 201 DLGTGSG--AIAIGIA-RVLGSKGSIIAVDLNPLAAAVAAFN--AQRYGLQDIIEIRQGS 255 (324)
Q Consensus 201 DLGcGsG--~iai~la-~~~~p~~~V~gvDis~~al~~Ar~N--~~~~gl~~rv~~~~gD 255 (324)
|+|+..| .....+. +...+..+|+++|-++..++..++| +..+...+.++++...
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~~~~~~~~~~~~~ 60 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALNDKDGEVEFHPYA 60 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHTTTSTTGGEEEE-
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhcCCCceEEEEEee
Confidence 8999999 5555543 2345788999999999999999999 6666443345555543
|
; PDB: 2PY6_A. |
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.56 E-value=1.8 Score=43.52 Aligned_cols=106 Identities=12% Similarity=0.134 Sum_probs=68.0
Q ss_pred eEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcCCCC
Q 020573 198 FWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYI 277 (324)
Q Consensus 198 ~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNPPYi 277 (324)
+++-+|||.--+...+-+. ....|+.+|+|+.+++.+..--.+. .....+...|..... ...++||+|+-=
T Consensus 51 ~~l~lGCGNS~l~e~ly~~--G~~dI~~iD~S~V~V~~m~~~~~~~--~~~~~~~~~d~~~l~-fedESFdiVIdk---- 121 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKN--GFEDITNIDSSSVVVAAMQVRNAKE--RPEMQMVEMDMDQLV-FEDESFDIVIDK---- 121 (482)
T ss_pred eeEeecCCCCHHHHHHHhc--CCCCceeccccHHHHHHHHhccccC--CcceEEEEecchhcc-CCCcceeEEEec----
Confidence 8999999999988888775 3568999999999988765432211 123788888876632 235789998872
Q ss_pred CCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 278 PSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 278 ~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
+.++.+ +++..++.- ....-..+.+.++.|++||.
T Consensus 122 --GtlDal------~~de~a~~~----~~~v~~~~~eVsrvl~~~gk 156 (482)
T KOG2352|consen 122 --GTLDAL------FEDEDALLN----TAHVSNMLDEVSRVLAPGGK 156 (482)
T ss_pred --Cccccc------cCCchhhhh----hHHhhHHHhhHHHHhccCCE
Confidence 111111 111111110 02334567888899999984
|
|
| >PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length | Back alignment and domain information |
|---|
Probab=88.68 E-value=4 Score=36.85 Aligned_cols=76 Identities=17% Similarity=0.173 Sum_probs=55.9
Q ss_pred CCeEEEEcCCcc----HHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccc-cccccCCCCeeEE
Q 020573 196 DGFWVDLGTGSG----AIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWF-GKLKDVEGKLSGV 270 (324)
Q Consensus 196 ~~~VLDLGcGsG----~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~-~~l~~~~~~fDlI 270 (324)
.+.+++.+|+-| .++++.|.+- .++++++|--+++.+...++.+...++.+.++|+.|+-. +.+..+ ...|++
T Consensus 42 AkliVe~~s~g~~~~ttiaLaaAAr~-TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e~~~~~~-~~iDF~ 119 (218)
T PF07279_consen 42 AKLIVEAWSSGGAISTTIALAAAARQ-TGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPEEVMPGL-KGIDFV 119 (218)
T ss_pred ceEEEEEecCCCchHhHHHHHHHHHh-cCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCCHHHHHhhc-cCCCEE
Confidence 457899876644 4555555553 678999999999998888988888888877899999853 334443 468888
Q ss_pred EEc
Q 020573 271 VSN 273 (324)
Q Consensus 271 VsN 273 (324)
+.+
T Consensus 120 vVD 122 (218)
T PF07279_consen 120 VVD 122 (218)
T ss_pred EEe
Confidence 874
|
The function of this family is unknown. |
| >KOG3350 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.58 E-value=4.3 Score=35.66 Aligned_cols=124 Identities=11% Similarity=0.137 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHhcCCCceeEEe--cccccCeeeeeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHH
Q 020573 133 DELYGLWKQRIEKRKPFQYLVG--CEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIA 210 (324)
Q Consensus 133 ~~~~~~~~~r~~~~~pl~yi~g--~~~f~~l~~~v~~~vliPrp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~ia 210 (324)
.+....-.+|+...++..++++ ...|.--+|..+ +...+.+++...+.. ..+.+|.=+.|-|=++-
T Consensus 21 ~eF~aEq~k~~e~~~~~~~~i~~~~eDwQlsqfwy~------~eta~~La~e~v~~s------~e~~rIacvS~Psly~y 88 (217)
T KOG3350|consen 21 NEFLAEQQKRIEEEENQSDIIEKIGEDWQLSQFWYS------DETARKLAAERVEAS------GEGSRIACVSCPSLYVY 88 (217)
T ss_pred HHHHHHHHhhhhccCchhhhhhhcccchhhhhhhcC------HHHHHHHHHHHHhhc------ccCceEEEEeCchHHhh
Confidence 3334444456666666656554 234432122211 122334444443322 12457777777765522
Q ss_pred HHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccccc---CCCCeeEEEEcCCCCCCC
Q 020573 211 IGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKD---VEGKLSGVVSNPPYIPSD 280 (324)
Q Consensus 211 i~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~---~~~~fDlIVsNPPYi~~~ 280 (324)
.-.-..-.|.-+|+-.+.+.. ...+| -+|+.-|.-.++.. +.+.||+||.+|||....
T Consensus 89 ~k~re~~~~~~~v~lfEfDkR--------Fe~yg----~eFvfYDyN~p~dlp~~lk~~fdiivaDPPfL~~e 149 (217)
T KOG3350|consen 89 QKKREIEIPHDQVYLFEFDKR--------FELYG----TEFVFYDYNCPLDLPDELKAHFDIIVADPPFLSEE 149 (217)
T ss_pred hhhhhccCCceeEEEEEehhh--------HHhcc----ceeEEeccCCCCCCHHHHHhcccEEEeCCccccch
Confidence 211111124568888888753 23344 45666666555432 356899999999998654
|
|
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=88.55 E-value=2.2 Score=43.46 Aligned_cols=43 Identities=28% Similarity=0.313 Sum_probs=36.7
Q ss_pred CCCCeEEEEcCC-ccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 020573 194 LRDGFWVDLGTG-SGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF 238 (324)
Q Consensus 194 ~~~~~VLDLGcG-sG~iai~la~~~~p~~~V~gvDis~~al~~Ar~ 238 (324)
.++.+|+=+|+| .|..++..|+.+ +++|+++|.+++.++.+++
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~l--GA~V~a~D~~~~rle~aes 206 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSL--GAIVRAFDTRPEVAEQVES 206 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH
Confidence 457899999999 678888889986 3589999999999888775
|
|
| >PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown | Back alignment and domain information |
|---|
Probab=87.46 E-value=1.2 Score=36.86 Aligned_cols=65 Identities=23% Similarity=0.280 Sum_probs=35.7
Q ss_pred CCeEEEEcCCccH-HHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEE-c
Q 020573 196 DGFWVDLGTGSGA-IAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVS-N 273 (324)
Q Consensus 196 ~~~VLDLGcGsG~-iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVs-N 273 (324)
..+++++|-|.=. .+..|.+. +..|+++|+++. ++. . .+.++.-|.+++-...-...|+|.| |
T Consensus 14 ~~kiVEVGiG~~~~vA~~L~~~---G~dV~~tDi~~~-------~a~-~----g~~~v~DDif~P~l~iY~~a~lIYSiR 78 (127)
T PF03686_consen 14 YGKIVEVGIGFNPEVAKKLKER---GFDVIATDINPR-------KAP-E----GVNFVVDDIFNPNLEIYEGADLIYSIR 78 (127)
T ss_dssp SSEEEEET-TT--HHHHHHHHH---S-EEEEE-SS-S----------------STTEE---SSS--HHHHTTEEEEEEES
T ss_pred CCcEEEECcCCCHHHHHHHHHc---CCcEEEEECccc-------ccc-c----CcceeeecccCCCHHHhcCCcEEEEeC
Confidence 4499999999654 45555554 379999999987 332 2 3778999999875444457899988 5
Q ss_pred CC
Q 020573 274 PP 275 (324)
Q Consensus 274 PP 275 (324)
||
T Consensus 79 PP 80 (127)
T PF03686_consen 79 PP 80 (127)
T ss_dssp --
T ss_pred CC
Confidence 55
|
; PDB: 2K4M_A. |
| >PRK07102 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.14 E-value=5 Score=35.75 Aligned_cols=78 Identities=10% Similarity=0.004 Sum_probs=52.3
Q ss_pred eEEEEcCCccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc------cCCCCeeEE
Q 020573 198 FWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK------DVEGKLSGV 270 (324)
Q Consensus 198 ~VLDLGcGsG~iai~la~~~~-p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~------~~~~~fDlI 270 (324)
+++-.| |+|.++..+++++- .+.+|++++.+++..+...+++...+ ..++++++.|..+.-. ....++|++
T Consensus 3 ~vlItG-as~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~~~d~v 80 (243)
T PRK07102 3 KILIIG-ATSDIARACARRYAAAGARLYLAARDVERLERLADDLRARG-AVAVSTHELDILDTASHAAFLDSLPALPDIV 80 (243)
T ss_pred EEEEEc-CCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhc-CCeEEEEecCCCChHHHHHHHHHHhhcCCEE
Confidence 566566 67888888887662 34689999999877665545444332 2368999999876321 112357999
Q ss_pred EEcCCCC
Q 020573 271 VSNPPYI 277 (324)
Q Consensus 271 VsNPPYi 277 (324)
|.|..+.
T Consensus 81 v~~ag~~ 87 (243)
T PRK07102 81 LIAVGTL 87 (243)
T ss_pred EECCcCC
Confidence 9987654
|
|
| >PRK07523 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.55 E-value=6.9 Score=35.14 Aligned_cols=81 Identities=17% Similarity=0.032 Sum_probs=56.5
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc---------cCC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVE 264 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~-p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~---------~~~ 264 (324)
.++++|=.| |+|.++..+++.+. .+.+|+.++.+++.++...+.++..+ .++.++..|+.+.-. ...
T Consensus 9 ~~k~vlItG-a~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 85 (255)
T PRK07523 9 TGRRALVTG-SSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQG--LSAHALAFDVTDHDAVRAAIDAFEAEI 85 (255)
T ss_pred CCCEEEEEC-CcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--ceEEEEEccCCCHHHHHHHHHHHHHhc
Confidence 456788777 68888888887652 35689999999887766666665444 348888888875311 112
Q ss_pred CCeeEEEEcCCCCC
Q 020573 265 GKLSGVVSNPPYIP 278 (324)
Q Consensus 265 ~~fDlIVsNPPYi~ 278 (324)
+..|++|.|.-+..
T Consensus 86 ~~~d~li~~ag~~~ 99 (255)
T PRK07523 86 GPIDILVNNAGMQF 99 (255)
T ss_pred CCCCEEEECCCCCC
Confidence 56899999976543
|
|
| >PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes | Back alignment and domain information |
|---|
Probab=86.51 E-value=1.2 Score=40.48 Aligned_cols=52 Identities=13% Similarity=0.272 Sum_probs=34.6
Q ss_pred HHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Q 020573 179 MVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAA 237 (324)
Q Consensus 179 lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar 237 (324)
++.++.+.+ .. ....+++|+.||+|+++..+... ..+|+.-|+++..+...+
T Consensus 8 l~~~I~~~i-p~---~~~~~~vepF~G~g~V~~~~~~~---~~~vi~ND~~~~l~~~~~ 59 (260)
T PF02086_consen 8 LAKWIIELI-PK---NKHKTYVEPFAGGGSVFLNLKQP---GKRVIINDINPDLINFWK 59 (260)
T ss_dssp GHHHHHHHS--S----S-SEEEETT-TTSHHHHCC------SSEEEEEES-HHHHHHHH
T ss_pred HHHHHHHHc-CC---CCCCEEEEEecchhHHHHHhccc---ccceeeeechHHHHHHHH
Confidence 455566655 21 14569999999999999988763 478999999998776665
|
There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B. |
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=85.42 E-value=0.48 Score=47.46 Aligned_cols=77 Identities=17% Similarity=0.110 Sum_probs=55.0
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc------cCCCCee
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK------DVEGKLS 268 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~------~~~~~fD 268 (324)
.++++|=+|-|+|.+...+-..+ |..++++|+++|+++++|+++.....-. +.+++-.|-.+.+. .....||
T Consensus 295 ~~~~~lvvg~ggG~l~sfl~~~~-p~~~i~~ve~dP~~l~va~q~f~f~q~~-r~~V~i~dGl~~~~~~~k~~~~~~~~d 372 (482)
T KOG2352|consen 295 TGGKQLVVGLGGGGLPSFLHMSL-PKFQITAVEIDPEMLEVATQYFGFMQSD-RNKVHIADGLDFLQRTAKSQQEDICPD 372 (482)
T ss_pred ccCcEEEEecCCCccccceeeec-CccceeEEEEChhHhhccHhhhchhhhh-hhhhhHhhchHHHHHHhhccccccCCc
Confidence 35678999999999999998887 7899999999999999999997543211 23333333332221 1235799
Q ss_pred EEEEc
Q 020573 269 GVVSN 273 (324)
Q Consensus 269 lIVsN 273 (324)
++..+
T Consensus 373 vl~~d 377 (482)
T KOG2352|consen 373 VLMVD 377 (482)
T ss_pred EEEEE
Confidence 98875
|
|
| >KOG2920 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.35 E-value=1.2 Score=41.66 Aligned_cols=38 Identities=18% Similarity=0.085 Sum_probs=32.6
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHH
Q 020573 194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAA 233 (324)
Q Consensus 194 ~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al 233 (324)
..+++|||+|||+|.-.+.+... ....++..|.|.+.+
T Consensus 115 ~~~k~vLELgCg~~Lp~i~~~~~--~~~~~~fqD~na~vl 152 (282)
T KOG2920|consen 115 FSGKRVLELGCGAALPGIFAFVK--GAVSVHFQDFNAEVL 152 (282)
T ss_pred ecCceeEecCCcccccchhhhhh--ccceeeeEecchhhe
Confidence 45789999999999999999886 347899999998877
|
|
| >PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.15 E-value=8.8 Score=34.46 Aligned_cols=81 Identities=15% Similarity=0.052 Sum_probs=52.1
Q ss_pred CeEEEEcCCccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc---------cCCCC
Q 020573 197 GFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVEGK 266 (324)
Q Consensus 197 ~~VLDLGcGsG~iai~la~~~~-p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~---------~~~~~ 266 (324)
+++|=.| |+|.++..+++.+. .+.+|+.+|.+....+.....+....-..++.++..|+.+.-. ...++
T Consensus 3 k~ilItG-~~~~IG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~~ 81 (259)
T PRK12384 3 QVAVVIG-GGQTLGAFLCHGLAEEGYRVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVDEIFGR 81 (259)
T ss_pred CEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 3577777 67888888877652 3578999999987665544444322111358889999865311 11257
Q ss_pred eeEEEEcCCCCC
Q 020573 267 LSGVVSNPPYIP 278 (324)
Q Consensus 267 fDlIVsNPPYi~ 278 (324)
.|+||.|.-+..
T Consensus 82 id~vv~~ag~~~ 93 (259)
T PRK12384 82 VDLLVYNAGIAK 93 (259)
T ss_pred CCEEEECCCcCC
Confidence 899999976543
|
|
| >PRK08251 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.94 E-value=10 Score=33.66 Aligned_cols=81 Identities=12% Similarity=-0.024 Sum_probs=54.6
Q ss_pred CeEEEEcCCccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc---------cCCCC
Q 020573 197 GFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVEGK 266 (324)
Q Consensus 197 ~~VLDLGcGsG~iai~la~~~~-p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~---------~~~~~ 266 (324)
+++|=.| |+|.++..+++++. .+.+|+.++.+++.++.....+.......++.++.+|+.+.-. ...+.
T Consensus 3 k~vlItG-as~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 81 (248)
T PRK08251 3 QKILITG-ASSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFRDELGG 81 (248)
T ss_pred CEEEEEC-CCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 3567666 68888888887662 2368999999988777665555443223358899999876411 11246
Q ss_pred eeEEEEcCCCCC
Q 020573 267 LSGVVSNPPYIP 278 (324)
Q Consensus 267 fDlIVsNPPYi~ 278 (324)
.|+||.|.-+..
T Consensus 82 id~vi~~ag~~~ 93 (248)
T PRK08251 82 LDRVIVNAGIGK 93 (248)
T ss_pred CCEEEECCCcCC
Confidence 899999976543
|
|
| >KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=84.80 E-value=9.4 Score=36.16 Aligned_cols=85 Identities=16% Similarity=0.207 Sum_probs=62.1
Q ss_pred CCCCCeEEEEcCCccH---HHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccc---------
Q 020573 193 GLRDGFWVDLGTGSGA---IAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKL--------- 260 (324)
Q Consensus 193 ~~~~~~VLDLGcGsG~---iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l--------- 260 (324)
...++.||==|.|+|. +++.+|++ +++++..|++++..+...++++++| +++.+..|..+.-
T Consensus 35 ~v~g~~vLITGgg~GlGr~ialefa~r---g~~~vl~Din~~~~~etv~~~~~~g---~~~~y~cdis~~eei~~~a~~V 108 (300)
T KOG1201|consen 35 SVSGEIVLITGGGSGLGRLIALEFAKR---GAKLVLWDINKQGNEETVKEIRKIG---EAKAYTCDISDREEIYRLAKKV 108 (300)
T ss_pred hccCCEEEEeCCCchHHHHHHHHHHHh---CCeEEEEeccccchHHHHHHHHhcC---ceeEEEecCCCHHHHHHHHHHH
Confidence 3457788888888873 56666664 4689999999999988888888876 5899999887531
Q ss_pred ccCCCCeeEEEEcCCCCCCCCcc
Q 020573 261 KDVEGKLSGVVSNPPYIPSDDIS 283 (324)
Q Consensus 261 ~~~~~~fDlIVsNPPYi~~~~~~ 283 (324)
+..-|..|++|.|---.+...+-
T Consensus 109 k~e~G~V~ILVNNAGI~~~~~ll 131 (300)
T KOG1201|consen 109 KKEVGDVDILVNNAGIVTGKKLL 131 (300)
T ss_pred HHhcCCceEEEeccccccCCCcc
Confidence 12247899999996655544433
|
|
| >PRK06124 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.65 E-value=9.7 Score=34.11 Aligned_cols=81 Identities=16% Similarity=0.104 Sum_probs=55.7
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc---------cCC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVE 264 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~-p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~---------~~~ 264 (324)
.+++++=.| |+|.++..+++.+. .+.+|+.++.+++.++.....++..+ .++.++.+|+.+.-. ...
T Consensus 10 ~~k~ilItG-as~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 86 (256)
T PRK06124 10 AGQVALVTG-SARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAG--GAAEALAFDIADEEAVAAAFARIDAEH 86 (256)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHhc
Confidence 456777777 67777888777652 35799999999877766655555544 358889999865311 112
Q ss_pred CCeeEEEEcCCCCC
Q 020573 265 GKLSGVVSNPPYIP 278 (324)
Q Consensus 265 ~~fDlIVsNPPYi~ 278 (324)
+++|++|.|.-+..
T Consensus 87 ~~id~vi~~ag~~~ 100 (256)
T PRK06124 87 GRLDILVNNVGARD 100 (256)
T ss_pred CCCCEEEECCCCCC
Confidence 57899999976643
|
|
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.47 E-value=4.2 Score=38.60 Aligned_cols=43 Identities=19% Similarity=0.325 Sum_probs=31.9
Q ss_pred CCCeEEEEcCC-ccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 020573 195 RDGFWVDLGTG-SGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF 238 (324)
Q Consensus 195 ~~~~VLDLGcG-sG~iai~la~~~~p~~~V~gvDis~~al~~Ar~ 238 (324)
++.+|+=.|+| .|.+++.+|+.. ...+|+++|.+++.++.|++
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~-G~~~Vi~~~~~~~~~~~a~~ 212 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTL-GAAEIVCADVSPRSLSLARE 212 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEEeCCHHHHHHHHH
Confidence 46788888876 566677778875 22379999999998887764
|
|
| >COG0863 DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=84.30 E-value=4.5 Score=37.48 Aligned_cols=47 Identities=23% Similarity=0.274 Sum_probs=40.6
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHc
Q 020573 194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRY 243 (324)
Q Consensus 194 ~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~ 243 (324)
..+..|+|..+|+|..+++..+. +.+++|+|++++.++.+.+.+...
T Consensus 221 ~~~diVlDpf~GsGtt~~aa~~~---~r~~ig~e~~~~y~~~~~~r~~~~ 267 (302)
T COG0863 221 FPGDIVLDPFAGSGTTGIAAKNL---GRRFIGIEINPEYVEVALKRLQEG 267 (302)
T ss_pred CCCCEEeecCCCCChHHHHHHHc---CCceEEEecCHHHHHHHHHHHHhh
Confidence 35779999999999999987764 468999999999999999988755
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=83.93 E-value=0.54 Score=47.32 Aligned_cols=96 Identities=13% Similarity=0.188 Sum_probs=56.6
Q ss_pred CeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcCCC
Q 020573 197 GFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPY 276 (324)
Q Consensus 197 ~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNPPY 276 (324)
..|+|+.+|.|.||.+|... + |+.+-.-+..-.-.-..+-.-|+- =..-||-+.+......||+|-+|-=|
T Consensus 367 RNVMDMnAg~GGFAAAL~~~--~---VWVMNVVP~~~~ntL~vIydRGLI----G~yhDWCE~fsTYPRTYDLlHA~~lf 437 (506)
T PF03141_consen 367 RNVMDMNAGYGGFAAALIDD--P---VWVMNVVPVSGPNTLPVIYDRGLI----GVYHDWCEAFSTYPRTYDLLHADGLF 437 (506)
T ss_pred eeeeeecccccHHHHHhccC--C---ceEEEecccCCCCcchhhhhcccc----hhccchhhccCCCCcchhheehhhhh
Confidence 36999999999999999764 3 444444332111011111122331 23457877776656799999986222
Q ss_pred CCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 277 IPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 277 i~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
. .+..+. .+..++-+.-|.|+|||+
T Consensus 438 s-------------~~~~rC----------~~~~illEmDRILRP~G~ 462 (506)
T PF03141_consen 438 S-------------LYKDRC----------EMEDILLEMDRILRPGGW 462 (506)
T ss_pred h-------------hhcccc----------cHHHHHHHhHhhcCCCce
Confidence 1 111111 234678888999999995
|
; GO: 0008168 methyltransferase activity |
| >PRK06940 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.86 E-value=4.9 Score=36.97 Aligned_cols=76 Identities=21% Similarity=0.247 Sum_probs=51.6
Q ss_pred eEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc--------cCCCCeeE
Q 020573 198 FWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK--------DVEGKLSG 269 (324)
Q Consensus 198 ~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~--------~~~~~fDl 269 (324)
.++=-| .|.++..+++.+..+.+|+.+|.+++.++.+.+.++..+ .++.++..|+.+.-. ...+++|+
T Consensus 4 ~~lItG--a~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~i~~~~~~~~~~g~id~ 79 (275)
T PRK06940 4 VVVVIG--AGGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREAG--FDVSTQEVDVSSRESVKALAATAQTLGPVTG 79 (275)
T ss_pred EEEEEC--CChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEeecCCHHHHHHHHHHHHhcCCCCE
Confidence 344444 467999999988667899999999877665555554433 258888888865310 01257999
Q ss_pred EEEcCCCC
Q 020573 270 VVSNPPYI 277 (324)
Q Consensus 270 IVsNPPYi 277 (324)
+|.|.-+.
T Consensus 80 li~nAG~~ 87 (275)
T PRK06940 80 LVHTAGVS 87 (275)
T ss_pred EEECCCcC
Confidence 99997653
|
|
| >PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed | Back alignment and domain information |
|---|
Probab=83.70 E-value=10 Score=33.53 Aligned_cols=80 Identities=24% Similarity=0.194 Sum_probs=53.9
Q ss_pred CCeEEEEcCCccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc---------cCCC
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVEG 265 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~-p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~---------~~~~ 265 (324)
++++|=.| |+|.++..+++.+- .+.+|++++.++..+..+.+.+...+ .++.++.+|+.+... ...+
T Consensus 6 ~~~ilItG-asg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 82 (251)
T PRK12826 6 GRVALVTG-AARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAG--GKARARQVDVRDRAALKAAVAAGVEDFG 82 (251)
T ss_pred CCEEEEcC-CCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 45677555 57888888877652 24689999999876665555555443 248899999876311 1124
Q ss_pred CeeEEEEcCCCCC
Q 020573 266 KLSGVVSNPPYIP 278 (324)
Q Consensus 266 ~fDlIVsNPPYi~ 278 (324)
++|+||.|..+..
T Consensus 83 ~~d~vi~~ag~~~ 95 (251)
T PRK12826 83 RLDILVANAGIFP 95 (251)
T ss_pred CCCEEEECCCCCC
Confidence 7899999986654
|
|
| >KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=83.28 E-value=2.6 Score=40.41 Aligned_cols=46 Identities=17% Similarity=0.195 Sum_probs=40.0
Q ss_pred CCCCCCeEEEEcCC-ccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 020573 192 DGLRDGFWVDLGTG-SGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF 238 (324)
Q Consensus 192 ~~~~~~~VLDLGcG-sG~iai~la~~~~p~~~V~gvDis~~al~~Ar~ 238 (324)
....+.+||=+|+| .|..+...|+.+ ...+|+.+|+++..++.|++
T Consensus 166 ~vk~Gs~vLV~GAGPIGl~t~l~Aka~-GA~~VVi~d~~~~Rle~Ak~ 212 (354)
T KOG0024|consen 166 GVKKGSKVLVLGAGPIGLLTGLVAKAM-GASDVVITDLVANRLELAKK 212 (354)
T ss_pred CcccCCeEEEECCcHHHHHHHHHHHHc-CCCcEEEeecCHHHHHHHHH
Confidence 34567899999999 688888889988 56899999999999999997
|
|
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=83.03 E-value=2.8 Score=40.71 Aligned_cols=45 Identities=16% Similarity=0.250 Sum_probs=33.3
Q ss_pred CCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHH
Q 020573 192 DGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVA 236 (324)
Q Consensus 192 ~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~A 236 (324)
.+..+++|||+|.|.|.-+.++-..++.-..++-++.|+..-++.
T Consensus 110 ~dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~ 154 (484)
T COG5459 110 PDFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVG 154 (484)
T ss_pred CCcCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHH
Confidence 556678899999999998888888773334577888887544443
|
|
| >PRK07533 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=82.98 E-value=13 Score=33.63 Aligned_cols=80 Identities=15% Similarity=0.029 Sum_probs=50.8
Q ss_pred CCCeEEEEcCCc-cHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccc---------ccC
Q 020573 195 RDGFWVDLGTGS-GAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKL---------KDV 263 (324)
Q Consensus 195 ~~~~VLDLGcGs-G~iai~la~~~~-p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l---------~~~ 263 (324)
.++.+|-.|.++ +.|+.++|+.+. .+++|+.++.+.+..+.+++-.+..+ .+.++..|..+.- ...
T Consensus 9 ~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~~---~~~~~~~D~~~~~~v~~~~~~~~~~ 85 (258)
T PRK07533 9 AGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEELD---APIFLPLDVREPGQLEAVFARIAEE 85 (258)
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHhhc---cceEEecCcCCHHHHHHHHHHHHHH
Confidence 466888889887 478888877652 34688888988655443333333322 2456777876531 111
Q ss_pred CCCeeEEEEcCCCC
Q 020573 264 EGKLSGVVSNPPYI 277 (324)
Q Consensus 264 ~~~fDlIVsNPPYi 277 (324)
.++.|++|.|.-+.
T Consensus 86 ~g~ld~lv~nAg~~ 99 (258)
T PRK07533 86 WGRLDFLLHSIAFA 99 (258)
T ss_pred cCCCCEEEEcCccC
Confidence 26799999997554
|
|
| >COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.44 E-value=27 Score=32.40 Aligned_cols=77 Identities=21% Similarity=0.281 Sum_probs=61.5
Q ss_pred EEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccccc---CCCCeeEEEEcCCC
Q 020573 200 VDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKD---VEGKLSGVVSNPPY 276 (324)
Q Consensus 200 LDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~---~~~~fDlIVsNPPY 276 (324)
+..-+||--++..+.+. +-++.++|+.++=....++|.. -..++.+.++|-|..+.. ..++=-+|+.+|||
T Consensus 93 l~~YpGSP~lA~~llR~---qDRl~l~ELHp~D~~~L~~~f~---~d~~vrv~~~DG~~~l~a~LPP~erRglVLIDPPf 166 (279)
T COG2961 93 LRYYPGSPLLARQLLRE---QDRLVLTELHPSDAPLLRNNFA---GDRRVRVLRGDGFLALKAHLPPKERRGLVLIDPPF 166 (279)
T ss_pred cccCCCCHHHHHHHcch---hceeeeeecCccHHHHHHHHhC---CCcceEEEecCcHHHHhhhCCCCCcceEEEeCCCc
Confidence 89999999999988774 4689999999998888888876 234699999998865431 23466799999999
Q ss_pred CCCCCc
Q 020573 277 IPSDDI 282 (324)
Q Consensus 277 i~~~~~ 282 (324)
-..++.
T Consensus 167 E~~~eY 172 (279)
T COG2961 167 ELKDEY 172 (279)
T ss_pred ccccHH
Confidence 866554
|
|
| >PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=82.44 E-value=5.3 Score=35.68 Aligned_cols=80 Identities=15% Similarity=0.129 Sum_probs=53.3
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccc-----------ccc
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGK-----------LKD 262 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~-p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~-----------l~~ 262 (324)
++++++=.| |+|.++..+++.+. .+.+|+++|.+.+.++...+.++..+. .++.++..|.... +..
T Consensus 11 ~~k~vlItG-~~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~ 88 (247)
T PRK08945 11 KDRIILVTG-AGDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAAGG-PQPAIIPLDLLTATPQNYQQLADTIEE 88 (247)
T ss_pred CCCEEEEeC-CCchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHhcCC-CCceEEEecccCCCHHHHHHHHHHHHH
Confidence 456777777 67888888887652 246999999998877666665555443 3477777776421 111
Q ss_pred CCCCeeEEEEcCCC
Q 020573 263 VEGKLSGVVSNPPY 276 (324)
Q Consensus 263 ~~~~fDlIVsNPPY 276 (324)
..++.|.||.|--.
T Consensus 89 ~~~~id~vi~~Ag~ 102 (247)
T PRK08945 89 QFGRLDGVLHNAGL 102 (247)
T ss_pred HhCCCCEEEECCcc
Confidence 12578999998543
|
|
| >PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted | Back alignment and domain information |
|---|
Probab=82.20 E-value=0.44 Score=43.90 Aligned_cols=78 Identities=23% Similarity=0.339 Sum_probs=47.1
Q ss_pred EEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccccc---CCCCeeEEEEcCCC
Q 020573 200 VDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKD---VEGKLSGVVSNPPY 276 (324)
Q Consensus 200 LDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~---~~~~fDlIVsNPPY 276 (324)
+..-.||=.++..+.+. .-+.+.+|+.+...+..++|+.. ..++++++.|-++.+.. ...+=-+|+.+|||
T Consensus 62 l~~YPGSP~ia~~llR~---qDrl~l~ELHp~d~~~L~~~~~~---~~~v~v~~~DG~~~l~allPP~~rRglVLIDPpY 135 (245)
T PF04378_consen 62 LRFYPGSPAIAARLLRE---QDRLVLFELHPQDFEALKKNFRR---DRRVRVHHRDGYEGLKALLPPPERRGLVLIDPPY 135 (245)
T ss_dssp --EEE-HHHHHHHHS-T---TSEEEEE--SHHHHHHHTTS--T---TS-EEEE-S-HHHHHHHH-S-TTS-EEEEE----
T ss_pred cCcCCCCHHHHHHhCCc---cceEEEEecCchHHHHHHHHhcc---CCccEEEeCchhhhhhhhCCCCCCCeEEEECCCC
Confidence 77889999999888774 47999999999999999888764 24799999999885432 23456799999999
Q ss_pred CCCCCcc
Q 020573 277 IPSDDIS 283 (324)
Q Consensus 277 i~~~~~~ 283 (324)
-..++..
T Consensus 136 E~~~dy~ 142 (245)
T PF04378_consen 136 EQKDDYQ 142 (245)
T ss_dssp -STTHHH
T ss_pred CCchHHH
Confidence 8766543
|
; PDB: 2OO3_A. |
| >PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=82.08 E-value=15 Score=32.58 Aligned_cols=79 Identities=13% Similarity=0.040 Sum_probs=54.2
Q ss_pred CCeEEEEcCCccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc---------cCCC
Q 020573 196 DGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVEG 265 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~-~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~---------~~~~ 265 (324)
+++++-.| |+|.++..+++++ ..+.+|+.++.++...+.....+...+ .++.++..|..+... ...+
T Consensus 7 ~~~vlVtG-~sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 83 (239)
T PRK07666 7 GKNALITG-AGRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAYG--VKVVIATADVSDYEEVTAAIEQLKNELG 83 (239)
T ss_pred CCEEEEEc-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhC--CeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 45677777 5888888888765 245699999999877665554554333 468889999865321 0124
Q ss_pred CeeEEEEcCCCC
Q 020573 266 KLSGVVSNPPYI 277 (324)
Q Consensus 266 ~fDlIVsNPPYi 277 (324)
..|+||.|....
T Consensus 84 ~id~vi~~ag~~ 95 (239)
T PRK07666 84 SIDILINNAGIS 95 (239)
T ss_pred CccEEEEcCccc
Confidence 789999997654
|
|
| >PRK06949 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=81.55 E-value=17 Score=32.41 Aligned_cols=79 Identities=11% Similarity=0.061 Sum_probs=54.7
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc---------cCC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVE 264 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~-p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~---------~~~ 264 (324)
.+++++=.| |+|.++..+++.+. .+.+|++++.+++.++.....+...+ .+++++..|+.+.-. ...
T Consensus 8 ~~k~ilItG-asg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 84 (258)
T PRK06949 8 EGKVALVTG-ASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAEG--GAAHVVSLDVTDYQSIKAAVAHAETEA 84 (258)
T ss_pred CCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHhc
Confidence 356777777 77888888887662 34689999999888766665554433 358888888865310 112
Q ss_pred CCeeEEEEcCCC
Q 020573 265 GKLSGVVSNPPY 276 (324)
Q Consensus 265 ~~fDlIVsNPPY 276 (324)
+++|+||.|-..
T Consensus 85 ~~~d~li~~ag~ 96 (258)
T PRK06949 85 GTIDILVNNSGV 96 (258)
T ss_pred CCCCEEEECCCC
Confidence 468999998764
|
|
| >PRK06125 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=81.49 E-value=16 Score=32.88 Aligned_cols=81 Identities=15% Similarity=0.050 Sum_probs=53.5
Q ss_pred CCeEEEEcCCccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc-----cCCCCeeE
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK-----DVEGKLSG 269 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~-p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~-----~~~~~fDl 269 (324)
+++++=.|+ +|.++..+++.+. .+.+|++++.+++.++.+...++... ..++.++..|+.+.-. ...++.|+
T Consensus 7 ~k~vlItG~-~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~~g~id~ 84 (259)
T PRK06125 7 GKRVLITGA-SKGIGAAAAEAFAAEGCHLHLVARDADALEALAADLRAAH-GVDVAVHALDLSSPEAREQLAAEAGDIDI 84 (259)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhc-CCceEEEEecCCCHHHHHHHHHHhCCCCE
Confidence 456777774 5667777766542 34699999999887766665555432 2358888888865311 11257999
Q ss_pred EEEcCCCCC
Q 020573 270 VVSNPPYIP 278 (324)
Q Consensus 270 IVsNPPYi~ 278 (324)
+|.|.-...
T Consensus 85 lv~~ag~~~ 93 (259)
T PRK06125 85 LVNNAGAIP 93 (259)
T ss_pred EEECCCCCC
Confidence 999976543
|
|
| >PRK08213 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=81.46 E-value=13 Score=33.49 Aligned_cols=80 Identities=16% Similarity=0.102 Sum_probs=56.3
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc---------cCC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVE 264 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~-p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~---------~~~ 264 (324)
.++++|=.| |+|.++..+++.+. .+.+|+.++.+...++...+.+...+ .++.++.+|+.+.-. ...
T Consensus 11 ~~k~ilItG-a~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~--~~~~~~~~Dl~d~~~i~~~~~~~~~~~ 87 (259)
T PRK08213 11 SGKTALVTG-GSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALG--IDALWIAADVADEADIERLAEETLERF 87 (259)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 345777777 78888998888762 24689999999887776666655443 358889999876311 112
Q ss_pred CCeeEEEEcCCCC
Q 020573 265 GKLSGVVSNPPYI 277 (324)
Q Consensus 265 ~~fDlIVsNPPYi 277 (324)
+.+|.||.|..+.
T Consensus 88 ~~id~vi~~ag~~ 100 (259)
T PRK08213 88 GHVDILVNNAGAT 100 (259)
T ss_pred CCCCEEEECCCCC
Confidence 4689999997653
|
|
| >PRK05599 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=80.81 E-value=9.2 Score=34.41 Aligned_cols=77 Identities=19% Similarity=0.136 Sum_probs=53.6
Q ss_pred EEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccc---------ccCCCCeeE
Q 020573 199 WVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKL---------KDVEGKLSG 269 (324)
Q Consensus 199 VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l---------~~~~~~fDl 269 (324)
++=.|+ ++.++.++++.+..+.+|+.++.+++.++...+.++..+- +++.++..|..+.- ....++.|+
T Consensus 3 vlItGa-s~GIG~aia~~l~~g~~Vil~~r~~~~~~~~~~~l~~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~id~ 80 (246)
T PRK05599 3 ILILGG-TSDIAGEIATLLCHGEDVVLAARRPEAAQGLASDLRQRGA-TSVHVLSFDAQDLDTHRELVKQTQELAGEISL 80 (246)
T ss_pred EEEEeC-ccHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhccC-CceEEEEcccCCHHHHHHHHHHHHHhcCCCCE
Confidence 454555 5677888888776678899999998888776666665542 34788888876531 112368999
Q ss_pred EEEcCCCC
Q 020573 270 VVSNPPYI 277 (324)
Q Consensus 270 IVsNPPYi 277 (324)
+|.|.-+.
T Consensus 81 lv~nag~~ 88 (246)
T PRK05599 81 AVVAFGIL 88 (246)
T ss_pred EEEecCcC
Confidence 99997654
|
|
| >PRK08085 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=80.45 E-value=17 Score=32.58 Aligned_cols=79 Identities=16% Similarity=0.066 Sum_probs=53.5
Q ss_pred CCeEEEEcCCccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc---------cCCC
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVEG 265 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~-p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~---------~~~~ 265 (324)
++++|=.| |+|.++..+++++. .+.+|+.++.++..+......+...+ .++.++..|+.+... ...+
T Consensus 9 ~k~~lItG-as~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 85 (254)
T PRK08085 9 GKNILITG-SAQGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQEG--IKAHAAPFNVTHKQEVEAAIEHIEKDIG 85 (254)
T ss_pred CCEEEEEC-CCChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcC--CeEEEEecCCCCHHHHHHHHHHHHHhcC
Confidence 45666666 66788888877652 34689999999877766655555443 347788888865311 1125
Q ss_pred CeeEEEEcCCCC
Q 020573 266 KLSGVVSNPPYI 277 (324)
Q Consensus 266 ~fDlIVsNPPYi 277 (324)
++|++|.|.-+.
T Consensus 86 ~id~vi~~ag~~ 97 (254)
T PRK08085 86 PIDVLINNAGIQ 97 (254)
T ss_pred CCCEEEECCCcC
Confidence 789999998654
|
|
| >KOG2782 consensus Putative SAM dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.44 E-value=1.7 Score=39.43 Aligned_cols=66 Identities=29% Similarity=0.445 Sum_probs=54.2
Q ss_pred cccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 020573 171 IPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ 241 (324)
Q Consensus 171 iPrp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~ 241 (324)
.|.+-.-.+++.+++.+ ...++...+|+--|.|.-+..+.+.. +..++++.|.+|.|-++|+....
T Consensus 23 ~~~~HVPVm~devl~~l----spv~g~sf~DmTfGagGHt~~ilqk~-se~k~yalDrDP~A~~La~~~s~ 88 (303)
T KOG2782|consen 23 VPSSHVPVMLDEVLDIL----SPVRGRSFVDMTFGAGGHTSSILQKH-SELKNYALDRDPVARKLAHFHSD 88 (303)
T ss_pred ccccCCceehhhHHHHc----CCCCCceEEEEeccCCcchHHHHHhC-cHhhhhhhccChHHHHHHHHhhH
Confidence 34433446788888887 44567899999999999999999986 88999999999999999987764
|
|
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=80.39 E-value=3.2 Score=32.74 Aligned_cols=61 Identities=25% Similarity=0.293 Sum_probs=42.9
Q ss_pred CCccHHHHHHHHHhCCCc-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccc--ccC-CCCeeEEEE
Q 020573 204 TGSGAIAIGIARVLGSKG-SIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKL--KDV-EGKLSGVVS 272 (324)
Q Consensus 204 cGsG~iai~la~~~~p~~-~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l--~~~-~~~fDlIVs 272 (324)
||.|.++..+++.+..+. .|+.+|.+++.++.++.. + +.++.||..+.- ... -.+.|.|++
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~----~----~~~i~gd~~~~~~l~~a~i~~a~~vv~ 68 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE----G----VEVIYGDATDPEVLERAGIEKADAVVI 68 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT----T----SEEEES-TTSHHHHHHTTGGCESEEEE
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc----c----cccccccchhhhHHhhcCccccCEEEE
Confidence 788889999988775555 899999999997776642 2 779999987642 111 146787776
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >PRK08594 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=80.30 E-value=19 Score=32.69 Aligned_cols=82 Identities=16% Similarity=0.118 Sum_probs=49.8
Q ss_pred CCCeEEEEcCCc-cHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc---------cC
Q 020573 195 RDGFWVDLGTGS-GAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DV 263 (324)
Q Consensus 195 ~~~~VLDLGcGs-G~iai~la~~~~-p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~---------~~ 263 (324)
.++.++=.|.++ +.++.++++.+. .+++|+.++.+....+..++-.+... ..++.+++.|..+.-. ..
T Consensus 6 ~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 84 (257)
T PRK08594 6 EGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTLE-GQESLLLPCDVTSDEEITACFETIKEE 84 (257)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHcC-CCceEEEecCCCCHHHHHHHHHHHHHh
Confidence 356788888874 788888887662 35688888654321111222222221 2358888888865311 11
Q ss_pred CCCeeEEEEcCCCC
Q 020573 264 EGKLSGVVSNPPYI 277 (324)
Q Consensus 264 ~~~fDlIVsNPPYi 277 (324)
.+++|++|.|.-+.
T Consensus 85 ~g~ld~lv~nag~~ 98 (257)
T PRK08594 85 VGVIHGVAHCIAFA 98 (257)
T ss_pred CCCccEEEECcccC
Confidence 26899999997654
|
|
| >PRK06079 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=80.25 E-value=16 Score=32.93 Aligned_cols=78 Identities=17% Similarity=0.121 Sum_probs=50.3
Q ss_pred CCCeEEEEcCCc-cHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc---------cC
Q 020573 195 RDGFWVDLGTGS-GAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DV 263 (324)
Q Consensus 195 ~~~~VLDLGcGs-G~iai~la~~~~-p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~---------~~ 263 (324)
.++++|-.|.++ +.|+.++++++. .+.+|+.++.+....+.+++. . ..++.+++.|+.+.-. ..
T Consensus 6 ~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~~~~~~~~~~----~-~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 80 (252)
T PRK06079 6 SGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQNDRMKKSLQKL----V-DEEDLLVECDVASDESIERAFATIKER 80 (252)
T ss_pred CCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCchHHHHHHHhh----c-cCceeEEeCCCCCHHHHHHHHHHHHHH
Confidence 456788888775 678888877662 457899888875433322221 1 1347888899875311 11
Q ss_pred CCCeeEEEEcCCCC
Q 020573 264 EGKLSGVVSNPPYI 277 (324)
Q Consensus 264 ~~~fDlIVsNPPYi 277 (324)
.+++|++|.|.-+.
T Consensus 81 ~g~iD~lv~nAg~~ 94 (252)
T PRK06079 81 VGKIDGIVHAIAYA 94 (252)
T ss_pred hCCCCEEEEccccc
Confidence 26799999998654
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 324 | ||||
| 1vq1_A | 294 | Crystal Structure Of N5-Glutamine Methyltransferase | 5e-05 | ||
| 1nv8_A | 284 | N5-Glutamine Methyltransferase, Hemk Length = 284 | 7e-05 | ||
| 1sg9_A | 282 | Crystal Structure Of Thermotoga Maritima Protein He | 7e-05 |
| >pdb|1VQ1|A Chain A, Crystal Structure Of N5-Glutamine Methyltransferase, Hemk(Ec 2.1.1.-) (Tm0488) From Thermotoga Maritima At 2.80 A Resolution Length = 294 | Back alignment and structure |
|
| >pdb|1NV8|A Chain A, N5-Glutamine Methyltransferase, Hemk Length = 284 | Back alignment and structure |
|
| >pdb|1SG9|A Chain A, Crystal Structure Of Thermotoga Maritima Protein Hemk, An N5-Glutamine Methyltransferase Length = 282 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* Length = 276 | Back alignment and structure |
|---|
Score = 177 bits (451), Expect = 4e-54
Identities = 60/184 (32%), Positives = 87/184 (47%), Gaps = 10/184 (5%)
Query: 141 QRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWV 200
R +P +L G + L L V IPRP+TE +V+ L R +
Sbjct: 60 TRRRDGEPIAHLTGVREFWSLPLFVSPATLIPRPDTECLVEQALARL--PEQPCR---IL 114
Query: 201 DLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKL 260
DLGTG+GAIA+ +A IIAVD P A ++A NAQ +++ I I Q WF L
Sbjct: 115 DLGTGTGAIALALASER-PDCEIIAVDRMPDAVSLAQRNAQHLAIKN-IHILQSDWFSAL 172
Query: 261 KDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLK 320
+ + +VSNPPYI D Q +V + EP AL G+ ++H+ + + L
Sbjct: 173 AG--QQFAMIVSNPPYIDEQDPHLQQGDV-RFEPLTALVAADSGMADIVHIIEQSRNALV 229
Query: 321 PDKW 324
+
Sbjct: 230 SGGF 233
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* Length = 284 | Back alignment and structure |
|---|
Score = 175 bits (445), Expect = 3e-53
Identities = 60/185 (32%), Positives = 91/185 (49%), Gaps = 14/185 (7%)
Query: 141 QRIEKRKPFQYLVG-CEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFW 199
++ P Y++G E L VEEGVF+PRPETE +V+L +++ R
Sbjct: 73 EKRASGYPLHYILGEKEFM-GLSFLVEEGVFVPRPETEELVELALELI-RKYGIKT---V 127
Query: 200 VDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGK 259
D+GTGSGAI + +A+ + A D++ A +A NA+R+G+ D +R+G +
Sbjct: 128 ADIGTGSGAIGVSVAKFSDAIV--FATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEP 185
Query: 260 LKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASML 319
K+ + ++SNPPY+ S L +V EP AL GG DGLD+
Sbjct: 186 FKEKFASIEMILSNPPYVKSSA--HLPKDV-LFEPPEALFGGEDGLDFYREFF---GRYD 239
Query: 320 KPDKW 324
K
Sbjct: 240 TSGKI 244
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} Length = 215 | Back alignment and structure |
|---|
Score = 170 bits (433), Expect = 3e-52
Identities = 60/164 (36%), Positives = 83/164 (50%), Gaps = 9/164 (5%)
Query: 163 LSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGS 222
V IPRP+TE++V+ L R G R +D+GTGSG IA+ IA S
Sbjct: 1 FEVGPDCLIPRPDTEVLVEEAIRFLKRMPSGTR---VIDVGTGSGCIAVSIALAC-PGVS 56
Query: 223 IIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDV---EGKLSGVVSNPPYIPS 279
+ AVDL+ A AVA NA+R+G ++ L + +VSNPPYIP+
Sbjct: 57 VTAVDLSMDALAVARRNAERFGAV--VDWAAADGIEWLIERAERGRPWHAIVSNPPYIPT 114
Query: 280 DDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDK 323
+I L+ V +EPRLALDGG DGL + + +L +
Sbjct: 115 GEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGR 158
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} Length = 230 | Back alignment and structure |
|---|
Score = 159 bits (405), Expect = 8e-48
Identities = 29/185 (15%), Positives = 56/185 (30%), Gaps = 20/185 (10%)
Query: 140 KQRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFW 199
R + R + + + L + + P + + +R +
Sbjct: 10 SNR-QARILYNKAIAKALF-GLDIEYHPKGLVTTPISRY---IFLKTFLRGGEVA----- 59
Query: 200 VDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGK 259
+++GTG A+ +A + A +++ A N +R + G
Sbjct: 60 LEIGTGHTAMMALMAEKF-FNCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKG 118
Query: 260 LKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASML 319
+ EG + S PPY R A+ GG G ++ + L L
Sbjct: 119 VV--EGTFDVIFSAPPYYDKP-------LGRVLTEREAIGGGKYGEEFSVKLLEEAFDHL 169
Query: 320 KPDKW 324
P
Sbjct: 170 NPGGK 174
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} Length = 170 | Back alignment and structure |
|---|
Score = 87.5 bits (217), Expect = 4e-21
Identities = 25/144 (17%), Positives = 47/144 (32%), Gaps = 35/144 (24%)
Query: 169 VFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDL 228
+ P +T ++D + +GL +DLGT +G I + + + ++++ DL
Sbjct: 3 WYEPGEDTYTLMDALER------EGLEMKIVLDLGTSTGVITEQLRK----RNTVVSTDL 52
Query: 229 NPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVE 288
N A + + + VV NPPY+P
Sbjct: 53 NIRALESHRGGNL----------VRADLLCSINQ--ESVDVVVFNPPYVPD--------- 91
Query: 289 VGKHEPRLALDGGVDGLDYLLHLC 312
+ GG G + +
Sbjct: 92 ----TDDPIIGGGYLGREVIDRFV 111
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} Length = 259 | Back alignment and structure |
|---|
Score = 77.1 bits (190), Expect = 1e-16
Identities = 34/169 (20%), Positives = 59/169 (34%), Gaps = 16/169 (9%)
Query: 157 HWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARV 216
+L + VF + L+ +R G +DL +G+G I + ++
Sbjct: 18 LAENLRIIQSPSVFSFSIDAVLLAKFSYL-------PIRKGKIIDLCSGNGIIPLLLSTR 70
Query: 217 LGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDV-EGKLSGVVSNPP 275
+K I+ V++ A +A + L+D IEI + + + + V NPP
Sbjct: 71 --TKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIVTCNPP 128
Query: 276 YIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324
Y + D S R + L AS+LK
Sbjct: 129 YFATPDTSLKNTNEHFRIARHEVMCT------LEDTIRVAASLLKQGGK 171
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 Length = 194 | Back alignment and structure |
|---|
Score = 73.1 bits (180), Expect = 1e-15
Identities = 32/134 (23%), Positives = 54/134 (40%), Gaps = 14/134 (10%)
Query: 144 EKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLG 203
K + ++ + L + GVF VD + +LV + +D +DLG
Sbjct: 9 SDVKIVEDILRG---KKLKFKTDSGVFSYG-----KVDKGTKILVENVVVDKDDDILDLG 60
Query: 204 TGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDI-IEIRQGSWFGKLKD 262
G G I I +A S D+N A +A N + L + I + + +KD
Sbjct: 61 CGYGVIGIALAD---EVKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKD 117
Query: 263 VEGKLSGVVSNPPY 276
K + +++NPP
Sbjct: 118 --RKYNKIITNPPI 129
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 Length = 254 | Back alignment and structure |
|---|
Score = 74.0 bits (181), Expect = 2e-15
Identities = 27/157 (17%), Positives = 58/157 (36%), Gaps = 10/157 (6%)
Query: 156 EHWRDLVLSVEEGVFIPRPETE-LMVDLVSDVLVRDNDGLRDGFWV-DLGTGSGAIAIGI 213
E + L + + IP + V D++ + D+GTG+ I +
Sbjct: 25 EDF-GLSIDIPLERLIPTVPLRLNYIHWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLL 83
Query: 214 ARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDV-----EGKLS 268
L + +A +++ + A N ++ L D+I++ + L D E
Sbjct: 84 GATL-NGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYD 142
Query: 269 GVVSNPPYIPS-DDISGLQVEVGKHEPRLALDGGVDG 304
+ NPP+ + + G+ + P +++ G
Sbjct: 143 FCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGIT 179
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} Length = 343 | Back alignment and structure |
|---|
Score = 67.0 bits (164), Expect = 1e-12
Identities = 33/142 (23%), Positives = 62/142 (43%), Gaps = 13/142 (9%)
Query: 137 GLWKQRIEKRKPF--QYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGL 194
GL+ R+EK+ F + G L + GVF +D+ S +L+
Sbjct: 141 GLYFGRLEKQPVFDAEKFWGEYSVDGLTVKTLPGVFSRD-----GLDVGSQLLLSTLTPH 195
Query: 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQG 254
G +D+G G+G +++ AR K + D++ A + G++ E+
Sbjct: 196 TKGKVLDVGCGAGVLSVAFAR-HSPKIRLTLCDVSAPAVEASRATLAANGVEG--EVFAS 252
Query: 255 SWFGKLKDVEGKLSGVVSNPPY 276
+ F +V+G+ ++SNPP+
Sbjct: 253 NVF---SEVKGRFDMIISNPPF 271
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} Length = 197 | Back alignment and structure |
|---|
Score = 62.2 bits (151), Expect = 9e-12
Identities = 19/82 (23%), Positives = 33/82 (40%)
Query: 200 VDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGK 259
VD G+G +A ++G G + D+ A A L D + + +
Sbjct: 27 VDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNM 86
Query: 260 LKDVEGKLSGVVSNPPYIPSDD 281
K ++ + V+ N Y+PS D
Sbjct: 87 DKYIDCPVKAVMFNLGYLPSGD 108
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} Length = 260 | Back alignment and structure |
|---|
Score = 62.6 bits (152), Expect = 2e-11
Identities = 22/135 (16%), Positives = 41/135 (30%), Gaps = 20/135 (14%)
Query: 200 VDLGTGSGAIAIGIA-RVLGSKGSIIAVDLNPLAAAVAAFNA---QRYGLQDIIEIRQGS 255
DLG G+GA + +A R+ ++ + + + A A + IE+ +
Sbjct: 41 ADLGAGAGAAGMAVAARLEKAE--VTLYERSQEMAEFARRSLELPDNAAFSARIEVLEAD 98
Query: 256 WF-GKLKDVEGKLSG-----VVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLL 309
VE L V+ NPPY + D A +
Sbjct: 99 VTLRAKARVEAGLPDEHFHHVIMNPPYNDAGDRR-----TPDALKAEAHAMTEGLFE--- 150
Query: 310 HLCNGTASMLKPDKW 324
++++
Sbjct: 151 DWIRTASAIMVSGGQ 165
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} Length = 230 | Back alignment and structure |
|---|
Score = 61.4 bits (149), Expect = 3e-11
Identities = 17/99 (17%), Positives = 38/99 (38%), Gaps = 1/99 (1%)
Query: 200 VDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGK 259
+D+G+ + I + + +G IA ++ A N +GL I++R +
Sbjct: 26 LDVGSDHAYLPIFLLQ-MGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSA 84
Query: 260 LKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLAL 298
++ + + + DI ++ +H L L
Sbjct: 85 FEEADNIDTITICGMGGRLIADILNNDIDKLQHVKTLVL 123
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} Length = 244 | Back alignment and structure |
|---|
Score = 61.8 bits (150), Expect = 3e-11
Identities = 11/74 (14%), Positives = 30/74 (40%), Gaps = 1/74 (1%)
Query: 200 VDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGK 259
D+G+ + + + IA ++ A + GL + I++R+G+
Sbjct: 26 ADIGSDHAYLPCFAVK-NQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAV 84
Query: 260 LKDVEGKLSGVVSN 273
++ + + V++
Sbjct: 85 IEKKDAIDTIVIAG 98
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} Length = 375 | Back alignment and structure |
|---|
Score = 60.3 bits (146), Expect = 2e-10
Identities = 25/140 (17%), Positives = 53/140 (37%), Gaps = 13/140 (9%)
Query: 139 WKQRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGF 198
Q + + + D + VF R D+ + ++ +G
Sbjct: 174 EPQLADAPQTVSW---KLEGTDWTIHNHANVF-SRTGL----DIGARFFMQHLPENLEGE 225
Query: 199 WVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDI--IEIRQGSW 256
VDLG G+G I + + + ++ VD +P+A A + N + + + E +
Sbjct: 226 IVDLGCGNGVIGLTLLDKNP-QAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNA 284
Query: 257 FGKLKDVEGKLSGVVSNPPY 276
++ + + V+ NPP+
Sbjct: 285 LSGVEP--FRFNAVLCNPPF 302
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* Length = 225 | Back alignment and structure |
|---|
Score = 57.2 bits (138), Expect = 8e-10
Identities = 13/65 (20%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Query: 200 VDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGK 259
+D+G+ + I + G S IA ++ A N + +GL++ I++R +
Sbjct: 20 LDVGSDHAYLPIELVE-RGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAA 78
Query: 260 LKDVE 264
++ +
Sbjct: 79 FEETD 83
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* Length = 373 | Back alignment and structure |
|---|
Score = 57.1 bits (138), Expect = 2e-09
Identities = 23/77 (29%), Positives = 32/77 (41%), Gaps = 2/77 (2%)
Query: 200 VDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGK 259
+D GSG I I +A G II ++ A NA G+ D I+ QG +
Sbjct: 222 LDPMCGSGTILIELAL-RRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGD-ATQ 279
Query: 260 LKDVEGKLSGVVSNPPY 276
L + +SN PY
Sbjct: 280 LSQYVDSVDFAISNLPY 296
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219 | Back alignment and structure |
|---|
Score = 56.0 bits (135), Expect = 2e-09
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 193 GLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIR 252
G+ G +D+G+G GA++I +A+ SI A+D + +A N L D I+I
Sbjct: 41 GITAGTCIDIGSGPGALSIALAKQSD--FSIRALDFSKHMNEIALKNIADANLNDRIQIV 98
Query: 253 QG 254
QG
Sbjct: 99 QG 100
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} Length = 354 | Back alignment and structure |
|---|
Score = 56.7 bits (137), Expect = 2e-09
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
Query: 200 VDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGK 259
+D TGSG IA+ A LG + A DL+ +A A GL I +R
Sbjct: 208 LDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRAD--ARH 265
Query: 260 LKDVEGKLSGVVSNPPY 276
L ++ +++NPP+
Sbjct: 266 LPRFFPEVDRILANPPH 282
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Length = 305 | Back alignment and structure |
|---|
Score = 54.7 bits (131), Expect = 9e-09
Identities = 16/105 (15%), Positives = 32/105 (30%), Gaps = 1/105 (0%)
Query: 151 YLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWV-DLGTGSGAI 209
LV + + +E + P + LR G V + G +
Sbjct: 73 RLVTHQPGSGALAPLERVFYERLPAVLATRERHGHFRRALQRHLRPGCVVASVPCGWMSE 132
Query: 210 AIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQG 254
+ + ++ +D +P A A A + L I + +
Sbjct: 133 LLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQ 177
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* Length = 241 | Back alignment and structure |
|---|
Score = 52.7 bits (126), Expect = 3e-08
Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 5/81 (6%)
Query: 200 VDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGK 259
VD G G I A + +IA+D++P+ A+A NA+ YG+ D IE G +
Sbjct: 83 VDAFCGVGGNTIQFAL---TGMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLL 139
Query: 260 LKDVEGKLSGVVSNPPYIPSD 280
K V +PP+ D
Sbjct: 140 AS--FLKADVVFLSPPWGGPD 158
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 Length = 200 | Back alignment and structure |
|---|
Score = 51.9 bits (124), Expect = 4e-08
Identities = 22/107 (20%), Positives = 43/107 (40%), Gaps = 18/107 (16%)
Query: 172 PRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPL 231
++++ +D + + D GTG+G +A G + +LG++ S+ A D++P
Sbjct: 34 ASTAAYFLIEIYNDGNIGGRSVI------DAGTGNGILACG-SYLLGAE-SVTAFDIDPD 85
Query: 232 AAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIP 278
A A N + ++ GK + NPP+
Sbjct: 86 AIETAKRNCGGVNFM----------VADVSEISGKYDTWIMNPPFGS 122
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* Length = 381 | Back alignment and structure |
|---|
Score = 52.7 bits (126), Expect = 6e-08
Identities = 24/121 (19%), Positives = 50/121 (41%), Gaps = 11/121 (9%)
Query: 159 RDLVLSVEEGVFIPR---PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIAR 215
+ GVF P + L+++ + + L +G+R +DLG G GA+ + +AR
Sbjct: 196 AEYTFHHLPGVFSAGKVDPASLLLLEALQERL--GPEGVRGRQVLDLGAGYGALTLPLAR 253
Query: 216 VLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPP 275
++ V+ + + + L+ + L + E + +V+NPP
Sbjct: 254 ---MGAEVVGVEDDLASVLSLQKGLEANALK--AQALHSDVDEALTE-EARFDIIVTNPP 307
Query: 276 Y 276
+
Sbjct: 308 F 308
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} Length = 205 | Back alignment and structure |
|---|
Score = 51.0 bits (123), Expect = 7e-08
Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 6/74 (8%)
Query: 200 VDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGK 259
D+GTGSG +AI A LG+K S++A D++ + A NA G+ D I +++ S
Sbjct: 65 ADVGTGSGILAIA-AHKLGAK-SVLATDISDESMTAAEENAALNGIYD-IALQKTS---L 118
Query: 260 LKDVEGKLSGVVSN 273
L DV+GK +V+N
Sbjct: 119 LADVDGKFDLIVAN 132
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* Length = 192 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 1e-07
Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 6/64 (9%)
Query: 193 GLRDG--FWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIE 250
D+G G+G + + +A + A+D NP A + N QR+GL D +
Sbjct: 30 EPGKNDVAV-DVGCGTGGVTLELAG---RVRRVYAIDRNPEAISTTEMNLQRHGLGDNVT 85
Query: 251 IRQG 254
+ +G
Sbjct: 86 LMEG 89
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267 | Back alignment and structure |
|---|
Score = 51.0 bits (122), Expect = 1e-07
Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 201 DLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGS 255
D+G G+G + +A + G + +D + NA++ GLQ+ + GS
Sbjct: 52 DIGCGTGGQTMVLAGHVT--GQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGS 104
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Length = 219 | Back alignment and structure |
|---|
Score = 50.5 bits (121), Expect = 1e-07
Identities = 18/63 (28%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 193 GLRDGFWV-DLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEI 251
GL++G V D+GTG+G +++++G KG + A+D+ A + GL++ +E+
Sbjct: 34 GLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKN-VEV 92
Query: 252 RQG 254
+
Sbjct: 93 LKS 95
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257 | Back alignment and structure |
|---|
Score = 49.5 bits (118), Expect = 4e-07
Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Query: 201 DLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGS 255
D+G G+G + +A + G I +DL P + NA + D ++ GS
Sbjct: 52 DIGCGTGGQTLFLADYVK--GQITGIDLFPDFIEIFNENAVKANCADRVKGITGS 104
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276 | Back alignment and structure |
|---|
Score = 48.4 bits (115), Expect = 1e-06
Identities = 14/64 (21%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 193 GLRDGFWV-DLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEI 251
G V + G G GA + +A+ I ++D++P + A N ++ G+++ ++
Sbjct: 34 VYPPGAKVLEAGCGIGAQTVILAK-NNPDAEITSIDISPESLEKARENTEKNGIKN-VKF 91
Query: 252 RQGS 255
Q +
Sbjct: 92 LQAN 95
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB: 2gh1_A Length = 284 | Back alignment and structure |
|---|
Score = 48.0 bits (114), Expect = 2e-06
Identities = 12/71 (16%), Positives = 21/71 (29%), Gaps = 3/71 (4%)
Query: 185 DVLVRDNDGLRDGFWV-DLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRY 243
LV + + D G G G + + + +L +D A A +
Sbjct: 11 SFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLL 70
Query: 244 GLQDIIEIRQG 254
E +G
Sbjct: 71 PYD--SEFLEG 79
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} Length = 183 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 2e-06
Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 7/65 (10%)
Query: 193 GLRDG--FWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIE 250
L D+G GSG + + IA+ + A+D A V N ++ +++ +
Sbjct: 32 NLNKDDVVV-DVGCGSGGMTVEIAK---RCKFVYAIDYLDGAIEVTKQNLAKFNIKN-CQ 86
Query: 251 IRQGS 255
I +G
Sbjct: 87 IIKGR 91
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} Length = 237 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 4e-06
Identities = 10/55 (18%), Positives = 24/55 (43%)
Query: 200 VDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQG 254
+++G +G + A + G I A+D + A + ++ G++ I +
Sbjct: 75 IEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIES 129
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} Length = 210 | Back alignment and structure |
|---|
Score = 45.6 bits (109), Expect = 5e-06
Identities = 13/55 (23%), Positives = 22/55 (40%)
Query: 200 VDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQG 254
V G G G + AR + ++ +D + A GL D +E++ G
Sbjct: 61 VVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVG 115
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* Length = 247 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 7e-06
Identities = 12/55 (21%), Positives = 27/55 (49%)
Query: 200 VDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQG 254
+++G +G + A + G I+A+D+N + ++ G+ I+ R+G
Sbjct: 84 MEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREG 138
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* Length = 254 | Back alignment and structure |
|---|
Score = 45.3 bits (108), Expect = 8e-06
Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Query: 200 VDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDII 249
+DLGTGSG +AI A LG K + VD++P+ A NA+R G++
Sbjct: 125 LDLGTGSGVLAIA-AEKLGGK--ALGVDIDPMVLPQAEANAKRNGVRPRF 171
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* Length = 223 | Back alignment and structure |
|---|
Score = 45.3 bits (108), Expect = 8e-06
Identities = 18/55 (32%), Positives = 31/55 (56%)
Query: 200 VDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQG 254
+++GT G I +AR L S G ++ ++ + A +A N +R L D +E+R G
Sbjct: 63 LEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTG 117
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 Length = 277 | Back alignment and structure |
|---|
Score = 45.4 bits (107), Expect = 9e-06
Identities = 22/98 (22%), Positives = 47/98 (47%), Gaps = 11/98 (11%)
Query: 160 DLVLSVEEGVFIPRP-ETELMVDLVSDVLVRDNDGLRDGFWV-DLGTGSGAIAIGIARVL 217
D +++++ I P ++ + ++ +++G + D G GSGA+ +AR +
Sbjct: 84 DEIMNMKRRTQIVYPKDSSFIAMML---------DVKEGDRIIDTGVGSGAMCAVLARAV 134
Query: 218 GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGS 255
GS G + A + A +A N ++GL + + I+
Sbjct: 135 GSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRD 172
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} Length = 239 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 1e-05
Identities = 14/55 (25%), Positives = 28/55 (50%)
Query: 200 VDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQG 254
+++GT +G ++ A L G I+ D++ VA + GL++ I ++ G
Sbjct: 65 IEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLG 119
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} Length = 225 | Back alignment and structure |
|---|
Score = 44.9 bits (107), Expect = 1e-05
Identities = 17/55 (30%), Positives = 30/55 (54%)
Query: 200 VDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQG 254
+D+GT +G AI + L G++I D++ + A+A ++ GL D I +R
Sbjct: 69 IDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLS 123
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Length = 273 | Back alignment and structure |
|---|
Score = 45.2 bits (107), Expect = 1e-05
Identities = 13/65 (20%), Positives = 23/65 (35%), Gaps = 3/65 (4%)
Query: 193 GLRDGFWV-DLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEI 251
+R G V D+G G G A+ +A + + ++ A A GL + +
Sbjct: 58 DVRSGDRVLDVGCGIGKPAVRLATARD--VRVTGISISRPQVNQANARATAAGLANRVTF 115
Query: 252 RQGSW 256
Sbjct: 116 SYADA 120
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... Length = 221 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 1e-05
Identities = 17/55 (30%), Positives = 29/55 (52%)
Query: 200 VDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQG 254
++LG G A+ +AR+L ++ +++NP AA+ GLQD + I G
Sbjct: 63 LELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNG 117
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 Length = 229 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 1e-05
Identities = 11/55 (20%), Positives = 27/55 (49%)
Query: 200 VDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQG 254
+DLGT +G A+ +A L + G ++ +++ + ++ + I++R
Sbjct: 74 LDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLK 128
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} Length = 232 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 1e-05
Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 200 VDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQG 254
+++G G A+ +A L G IIA D +P A A+A Q+ G+ + I +R G
Sbjct: 77 LEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLG 131
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} Length = 242 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 1e-05
Identities = 16/77 (20%), Positives = 29/77 (37%), Gaps = 4/77 (5%)
Query: 200 VDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGK 259
++LGT +G A+ ++ L G +I D+N A + + I++R G
Sbjct: 65 LELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDT 124
Query: 260 LKDVEGKLSGVVSNPPY 276
L L +
Sbjct: 125 LH----SLLNEGGEHQF 137
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} Length = 275 | Back alignment and structure |
|---|
Score = 44.6 bits (105), Expect = 1e-05
Identities = 14/69 (20%), Positives = 29/69 (42%), Gaps = 7/69 (10%)
Query: 193 GLRDGFWV-DLGTGSGAIAIGIARVLGSKGSIIAVDLN------PLAAAVAAFNAQRYGL 245
++ G + ++G G G ++ +A +GS G + +D+ PL A + L
Sbjct: 40 QVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPL 99
Query: 246 QDIIEIRQG 254
D + +
Sbjct: 100 GDRLTVHFN 108
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} Length = 248 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 2e-05
Identities = 16/55 (29%), Positives = 30/55 (54%)
Query: 200 VDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQG 254
+++GT G I +AR L + G ++ ++ + A VA N Q G+ + +R+G
Sbjct: 68 LEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREG 122
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* Length = 421 | Back alignment and structure |
|---|
Score = 44.6 bits (105), Expect = 2e-05
Identities = 29/168 (17%), Positives = 48/168 (28%), Gaps = 32/168 (19%)
Query: 169 VFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDL 228
V P + MV L + R G ++ G G+ + V++
Sbjct: 21 VETPPEVVDFMVSLA--------EAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEI 72
Query: 229 NPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVE 288
+P A + + D + G F D+ ++ NPPY + S +
Sbjct: 73 DPKALDLPPWAEGILA--DFLLWEPGEAF----DL------ILGNPPYGIVGEASKYPIH 120
Query: 289 VGKHEPRL------ALDGGVDGLDYLLHLC------NGTASMLKPDKW 324
V K L G + L G + P W
Sbjct: 121 VFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPATW 168
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* Length = 255 | Back alignment and structure |
|---|
Score = 43.8 bits (103), Expect = 3e-05
Identities = 16/71 (22%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 193 GLRDGFWV-DLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEI 251
G+ G ++ + G GSGA+ + +A ++G +G +++ ++ A +A N + G D + I
Sbjct: 90 GISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTI 149
Query: 252 RQGSWFGKLKD 262
+ + +++
Sbjct: 150 KLKDIYEGIEE 160
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 Length = 336 | Back alignment and structure |
|---|
Score = 44.0 bits (103), Expect = 4e-05
Identities = 14/81 (17%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Query: 200 VDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGK 259
++ G+GSG +++ +++ +GS+G +I+ ++ +A N + + + + W
Sbjct: 110 LEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEE-WPDN 168
Query: 260 LKDVEGKLSGVVSNPPYIPSD 280
+ + +SG + + D
Sbjct: 169 VDFIHKDISGATEDIKSLTFD 189
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} Length = 384 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 4e-05
Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 218 GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPY 276
+ I D + +A NA+ GL+D+++++Q K ++SNPPY
Sbjct: 254 DIQLDISGFDFDGRMVEIARKNAREVGLEDVVKLKQMR-LQDFK-TNKINGVLISNPPY 310
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} Length = 385 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 5e-05
Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 223 IIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPY 276
I D++ + +A NA+ G+ + IE G + K E + +++NPPY
Sbjct: 260 IYGYDIDEESIDIARENAEIAGVDEYIEFNVGD-ATQFK-SEDEFGFIITNPPY 311
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} Length = 178 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 5e-05
Identities = 14/61 (22%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Query: 193 GLRDGFWV-DLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEI 251
+ + D+G GSG+IAI R + + + +++ NA G+ D I +
Sbjct: 22 APKPHETLWDIGGGSGSIAIEWLR-STPQTTAVCFEISEERRERILSNAINLGVSDRIAV 80
Query: 252 R 252
+
Sbjct: 81 Q 81
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A Length = 383 | Back alignment and structure |
|---|
Score = 43.1 bits (101), Expect = 6e-05
Identities = 20/83 (24%), Positives = 37/83 (44%), Gaps = 9/83 (10%)
Query: 171 IPRPETELMVDLVSDVLVR--------DNDGLRDGFWV-DLGTGSGAIAIGIARVLGSKG 221
+P +++ D+ +VL + DG +G V DLG G+G ++++G G
Sbjct: 50 VPESHRKILADIADEVLEKFYGCGSTLPADGSLEGATVLDLGCGTGRDVYLASKLVGEHG 109
Query: 222 SIIAVDLNPLAAAVAAFNAQRYG 244
+I VD+ VA + +
Sbjct: 110 KVIGVDMLDNQLEVARKYVEYHA 132
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} Length = 204 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 7e-05
Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 3/61 (4%)
Query: 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQG 254
R D+G GSG++++ + G I ++ N YGL + QG
Sbjct: 55 RGELLWDIGGGSGSVSVEWCL---AGGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQG 111
Query: 255 S 255
+
Sbjct: 112 T 112
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} Length = 393 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 7e-05
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Query: 223 IIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSG-VVSNPPY 276
II D++ +A NA GL D+I RQ + + G VV+NPPY
Sbjct: 266 IIGGDIDARLIEIAKQNAVEAGLGDLITFRQLQ-VADFQTEDEY--GVVVANPPY 317
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} Length = 878 | Back alignment and structure |
|---|
Score = 43.4 bits (101), Expect = 9e-05
Identities = 19/119 (15%), Positives = 34/119 (28%), Gaps = 9/119 (7%)
Query: 170 FIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLG--SKGSIIAVD 227
+++ + +L D D GSG + ++ I A D
Sbjct: 298 PTDIELGKVLSIISQHIL--GRPLTEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWAND 355
Query: 228 LNPLAAAVAAFNAQRYGLQ-----DIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDD 281
+ L + + Q + I + +S VV NPPY+
Sbjct: 356 IETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFANVSVVVMNPPYVSGVT 414
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} Length = 233 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 1e-04
Identities = 14/55 (25%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 200 VDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQG 254
+++GT G AI +A+ L + +I++++ + A + + GL+ IE+ G
Sbjct: 59 LEIGTAIGYSAIRMAQALP-EATIVSIERDERRYEEAHKHVKALGLESRIELLFG 112
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 Length = 256 | Back alignment and structure |
|---|
Score = 41.7 bits (98), Expect = 2e-04
Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Query: 193 GLRDGFWV-DLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEI 251
++ G + DLG+GSG + AR G G +D++ L A A A+ G+ + +
Sbjct: 33 RMKPGTRILDLGSGSGEMLCTWARDHGITG--TGIDMSSLFTAQAKRRAEELGVSERVHF 90
Query: 252 RQGS 255
Sbjct: 91 IHND 94
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* Length = 703 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 2e-04
Identities = 13/55 (23%), Positives = 20/55 (36%), Gaps = 1/55 (1%)
Query: 223 IIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSG-VVSNPPY 276
D + A NA+ G+ ++I + G V+SNPPY
Sbjct: 259 FYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPY 313
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} Length = 221 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 2e-04
Identities = 6/56 (10%), Positives = 16/56 (28%), Gaps = 1/56 (1%)
Query: 200 VDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQD-IIEIRQG 254
+ + +G + + I L ++ +D A + G +
Sbjct: 61 IAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLS 116
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Length = 297 | Back alignment and structure |
|---|
Score = 41.0 bits (96), Expect = 3e-04
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 200 VDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSW 256
+DLG G G A + R G SI +++ P+ + GL D I ++ GS+
Sbjct: 87 LDLGAGYGGAARFLVRKFG--VSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSF 141
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 Length = 344 | Back alignment and structure |
|---|
Score = 40.9 bits (96), Expect = 3e-04
Identities = 21/123 (17%), Positives = 44/123 (35%), Gaps = 24/123 (19%)
Query: 172 PRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKG----SIIAVD 227
P ++ L+ + +++ + +D G+ + + L KG VD
Sbjct: 111 PDSIGFIVAYLL-EKVIQKKKNVS---ILDPACGTANLLTTVINQLELKGDVDVHASGVD 166
Query: 228 LNPLAAAVAAFNAQRYGLQDI-IEIRQG----SWFGKLKDVEGKLSGVVSNPPY--IPSD 280
++ L ++A A LQ + + + DV V+S+ P P D
Sbjct: 167 VDDLLISLALVGAD---LQRQKMTLLHQDGLANLLVDPVDV------VISDLPVGYYPDD 217
Query: 281 DIS 283
+ +
Sbjct: 218 ENA 220
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} Length = 258 | Back alignment and structure |
|---|
Score = 39.7 bits (92), Expect = 6e-04
Identities = 15/55 (27%), Positives = 28/55 (50%)
Query: 200 VDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQG 254
++ GTGSG + + +AR +G KG + + + P A A N + + + + G
Sbjct: 101 LEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLG 155
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209 | Back alignment and structure |
|---|
Score = 39.1 bits (91), Expect = 7e-04
Identities = 10/55 (18%), Positives = 20/55 (36%), Gaps = 4/55 (7%)
Query: 201 DLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGS 255
D G G + I G K ++++ L A ++ + + I +G
Sbjct: 29 DCGAGGDLPPLSIFVEDGYK--TYGIEISDLQLKKAENFSRENNFK--LNISKGD 79
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} Length = 232 | Back alignment and structure |
|---|
Score = 39.2 bits (92), Expect = 7e-04
Identities = 10/55 (18%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Query: 200 VDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQG 254
+++GT G ++ A + + ++ N A N Y ++ + I +G
Sbjct: 76 LEIGTAIGYSSMQFAS-ISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEG 129
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239 | Back alignment and structure |
|---|
Score = 39.4 bits (92), Expect = 8e-04
Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 5/63 (7%)
Query: 193 GLRDGFWV-DLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEI 251
R V D+G G+G A+ + + I VD VA+ AQ G+++ +
Sbjct: 18 ECRAEHRVLDIGAGAGHTALAFSPYVQE---CIGVDATKEMVEVASSFAQEKGVEN-VRF 73
Query: 252 RQG 254
+QG
Sbjct: 74 QQG 76
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 324 | |||
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 100.0 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 100.0 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.94 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 99.88 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.87 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.8 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 99.79 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.77 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.75 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.74 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 99.74 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.73 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.73 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.73 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.72 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.71 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.7 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.7 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.7 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 99.69 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.69 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.69 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 99.69 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.68 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.68 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 99.68 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 99.68 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.67 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 99.67 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 99.67 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.66 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 99.66 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 99.65 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.64 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.64 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 99.63 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.63 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 99.63 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.62 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 99.61 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 99.61 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 99.61 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 99.61 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.59 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 99.59 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 99.59 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.59 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.59 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 99.58 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.58 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 99.58 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.58 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.58 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.58 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.58 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 99.58 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 99.57 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.57 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.57 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.57 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 99.56 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 99.56 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.56 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 99.56 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 99.56 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 99.56 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.56 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 99.56 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.56 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.55 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 99.55 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 99.55 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 99.55 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.55 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.55 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 99.54 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.54 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.54 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 99.54 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 99.54 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.54 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.54 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 99.54 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 99.53 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 99.52 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 99.52 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.52 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.52 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 99.52 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.52 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.51 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 99.51 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 99.51 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 99.51 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 99.51 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 99.51 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 99.5 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.5 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 99.5 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.5 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.49 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.49 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 99.49 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.48 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 99.48 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.48 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 99.48 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.48 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 99.48 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 99.48 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 99.47 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.47 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.47 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.47 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 99.47 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.47 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.46 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.46 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 99.46 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.46 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.46 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.45 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.45 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.44 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 99.44 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 99.44 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 99.44 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 99.44 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.44 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.43 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 99.42 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.42 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.42 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.42 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 99.42 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.42 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.42 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.42 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.42 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.41 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.41 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.41 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.41 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 99.41 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 99.41 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.41 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.41 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.41 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.4 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.4 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.4 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 99.4 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.4 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.4 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 99.4 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.39 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.39 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 99.39 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.39 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.38 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.38 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.38 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.38 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.38 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.38 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.37 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.37 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.37 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 99.37 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 99.36 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.35 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 99.34 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 99.34 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.33 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.33 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.33 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.33 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 99.33 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.33 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 99.33 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.33 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.32 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.32 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.32 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.32 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 99.32 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.31 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.31 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 99.31 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.31 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.31 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.31 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 99.3 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.3 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 99.3 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 99.3 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.3 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 99.29 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 99.29 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.29 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 99.29 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 99.29 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.29 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.29 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.28 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 99.28 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.28 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 99.28 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 99.28 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 99.28 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.27 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.27 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.27 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 99.27 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 99.26 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 99.26 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.26 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.26 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.25 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 99.25 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 99.24 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.24 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.24 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.24 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 99.24 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.23 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 99.23 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.23 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.23 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.23 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.22 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.22 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 99.22 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.21 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.21 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.2 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 99.2 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.19 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.19 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 99.19 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 99.18 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.17 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.16 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.15 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.15 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.14 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.14 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 99.12 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.11 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 99.08 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 99.08 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 99.07 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 99.06 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.04 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 99.03 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.01 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 98.97 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 98.96 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 98.96 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 98.96 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 98.96 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 98.95 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 98.93 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 98.93 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 98.93 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 98.92 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 98.87 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 98.84 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 98.83 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 98.82 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 98.81 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 98.81 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 98.75 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 98.72 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 98.71 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 98.71 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 98.71 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.7 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 98.66 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 98.62 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 98.61 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 98.51 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 98.42 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 98.38 | |
| 2oo3_A | 283 | Protein involved in catabolism of external DNA; st | 98.25 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 98.24 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 98.23 | |
| 3tka_A | 347 | Ribosomal RNA small subunit methyltransferase H; H | 98.18 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 98.11 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 97.91 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 97.83 | |
| 2c7p_A | 327 | Modification methylase HHAI; DNA methyltransferase | 97.77 | |
| 1i4w_A | 353 | Mitochondrial replication protein MTF1; mitochondr | 97.72 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 97.66 | |
| 1g55_A | 343 | DNA cytosine methyltransferase DNMT2; human DNA me | 97.65 | |
| 3g7u_A | 376 | Cytosine-specific methyltransferase; DNA-binding, | 97.53 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 97.36 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 97.31 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 97.07 | |
| 3ubt_Y | 331 | Modification methylase HAEIII; protein-DNA complex | 96.87 | |
| 2qrv_A | 295 | DNA (cytosine-5)-methyltransferase 3A; DNA methylt | 96.84 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 96.68 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 96.61 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 96.61 | |
| 3qv2_A | 327 | 5-cytosine DNA methyltransferase; DNMT2, ehmeth; H | 96.6 | |
| 4h0n_A | 333 | DNMT2; SAH binding, transferase; HET: SAH; 2.71A { | 96.59 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 96.58 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 96.57 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 96.52 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 96.4 | |
| 2py6_A | 409 | Methyltransferase FKBM; YP_546752.1, structural ge | 96.34 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 96.22 | |
| 3me5_A | 482 | Cytosine-specific methyltransferase; structural ge | 96.03 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 96.03 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 95.87 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 95.45 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 94.7 | |
| 3vyw_A | 308 | MNMC2; tRNA wobble uridine, modification enzyme, g | 94.44 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 94.37 | |
| 3swr_A | 1002 | DNA (cytosine-5)-methyltransferase 1; epigenetics, | 93.56 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 93.49 | |
| 1zkd_A | 387 | DUF185; NESG, RPR58, structural genomics, PSI, pro | 93.27 | |
| 4ft4_B | 784 | DNA (cytosine-5)-methyltransferase 1; chromodomain | 93.22 | |
| 3tos_A | 257 | CALS11; methyltransferase, calicheamicin, structur | 92.46 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 92.18 | |
| 4dkj_A | 403 | Cytosine-specific methyltransferase; CG-specificit | 92.1 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 91.16 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 90.76 | |
| 3av4_A | 1330 | DNA (cytosine-5)-methyltransferase 1; CXXC-type zi | 90.6 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 89.95 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 89.83 | |
| 4f3n_A | 432 | Uncharacterized ACR, COG1565 superfamily; structur | 89.4 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 88.71 | |
| 1yb1_A | 272 | 17-beta-hydroxysteroid dehydrogenase type XI; shor | 88.5 | |
| 4eso_A | 255 | Putative oxidoreductase; NADP, structural genomics | 88.38 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 87.7 | |
| 3rku_A | 287 | Oxidoreductase YMR226C; substrate fingerprint, sho | 87.39 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 86.57 | |
| 1xg5_A | 279 | ARPG836; short chain dehydrogenase, human, SGC, st | 86.56 | |
| 3lyl_A | 247 | 3-oxoacyl-(acyl-carrier-protein) reductase; alpha | 86.42 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 86.32 | |
| 4fs3_A | 256 | Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; | 86.0 | |
| 1rjd_A | 334 | PPM1P, carboxy methyl transferase for protein phos | 85.96 | |
| 3qiv_A | 253 | Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR | 85.89 | |
| 3sju_A | 279 | Keto reductase; short-chain dehydrogenase, oxidore | 85.64 | |
| 3o26_A | 311 | Salutaridine reductase; short chain dehydrogenase/ | 85.53 | |
| 1wma_A | 276 | Carbonyl reductase [NADPH] 1; oxidoreductase; HET: | 85.41 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 85.37 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 85.11 | |
| 1ae1_A | 273 | Tropinone reductase-I; oxidoreductase, tropane alk | 84.99 | |
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 84.9 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 84.84 | |
| 2jah_A | 247 | Clavulanic acid dehydrogenase; short-chain dehydro | 84.84 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 84.73 | |
| 4e6p_A | 259 | Probable sorbitol dehydrogenase (L-iditol 2-dehyd; | 84.13 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 84.07 | |
| 3awd_A | 260 | GOX2181, putative polyol dehydrogenase; oxidoreduc | 83.61 | |
| 3ioy_A | 319 | Short-chain dehydrogenase/reductase SDR; structura | 83.5 | |
| 3t4x_A | 267 | Oxidoreductase, short chain dehydrogenase/reducta; | 83.33 | |
| 1xu9_A | 286 | Corticosteroid 11-beta-dehydrogenase, isozyme 1; h | 83.27 | |
| 3sx2_A | 278 | Putative 3-ketoacyl-(acyl-carrier-protein) reduct; | 83.07 | |
| 3pk0_A | 262 | Short-chain dehydrogenase/reductase SDR; ssgcid, s | 81.85 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 81.8 | |
| 3grk_A | 293 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 81.66 | |
| 1vl8_A | 267 | Gluconate 5-dehydrogenase; TM0441, structural geno | 81.57 | |
| 3lf2_A | 265 | Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross | 81.49 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 81.26 | |
| 3r3s_A | 294 | Oxidoreductase; structural genomics, csgid, center | 80.77 | |
| 3ftp_A | 270 | 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid | 80.62 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 80.53 | |
| 1oaa_A | 259 | Sepiapterin reductase; tetrahydrobiopterin, oxidor | 80.53 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 80.24 |
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-37 Score=287.76 Aligned_cols=226 Identities=29% Similarity=0.403 Sum_probs=185.3
Q ss_pred HHHHHHHHHHHhhhccccccCCCCCCCccchHHHHHHHHHhhcCCCCCcccccccCCcccccCChhHHHHHHHHHHHHhc
Q 020573 66 LKKWHNWAKALASSVRSTFADSDNGPDSSILFRELNWLVEDSLEDPSLIPQLGFQNNSQSVRLRIGLDELYGLWKQRIEK 145 (324)
Q Consensus 66 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ll~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~r~~~ 145 (324)
+.+|++|+..++... . ++ ...|++||++++++.+...+.+. ...+..++. +.+..+.+|+..
T Consensus 16 ~~~~~~~~~~~l~~~-~-----~~------~~~~a~~ll~~~~~~~~~~l~~~---~~~~~~~~~---~~~~~~~~~r~~ 77 (284)
T 1nv8_A 16 IWSLIRDCSGKLEGV-T-----ET------SVLEVLLIVSRVLGIRKEDLFLK---DLGVSPTEE---KRILELVEKRAS 77 (284)
T ss_dssp HHHHHHHHHHHTTTT-C-----SC------HHHHHHHHHHHHHTCCGGGGCCS---SCCCCHHHH---HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhc-c-----CC------hHHHHHHHHHHHcCCCHHHHHhc---cccccccCH---HHHHHHHHHHHC
Confidence 888999998776532 1 11 23789999999999886444321 100112222 445556667789
Q ss_pred CCCceeEEecccccCeeeeeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEE
Q 020573 146 RKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIA 225 (324)
Q Consensus 146 ~~pl~yi~g~~~f~~l~~~v~~~vliPrp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~g 225 (324)
++|++|++|..+|+++.|.+++++|+|||+|+.+++.+++.+ .. ..+.+|||+|||+|++++.+++. ++.+|+|
T Consensus 78 ~~p~~yi~g~~~f~~~~~~v~~~~lipr~~te~lv~~~l~~~-~~---~~~~~vLDlG~GsG~~~~~la~~--~~~~v~~ 151 (284)
T 1nv8_A 78 GYPLHYILGEKEFMGLSFLVEEGVFVPRPETEELVELALELI-RK---YGIKTVADIGTGSGAIGVSVAKF--SDAIVFA 151 (284)
T ss_dssp TCCHHHHHTEEEETTEEEECCTTSCCCCTTHHHHHHHHHHHH-HH---HTCCEEEEESCTTSHHHHHHHHH--SSCEEEE
T ss_pred CCCCeEEeeeeEECCeEEEeCCCceecChhHHHHHHHHHHHh-cc---cCCCEEEEEeCchhHHHHHHHHC--CCCEEEE
Confidence 999999999999999999999999999999999999999877 21 13468999999999999999997 6789999
Q ss_pred EeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCe---eEEEEcCCCCCCCCcccchhhhhcccccccccCCC
Q 020573 226 VDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKL---SGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGV 302 (324)
Q Consensus 226 vDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~f---DlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~ 302 (324)
+|+|+.+++.|++|++.+++.++++++++|+++.+. ++| |+||+||||++..+ .++++|. |||..||++|.
T Consensus 152 vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~~~---~~f~~~D~IvsnPPyi~~~~--~l~~~v~-~ep~~al~~~~ 225 (284)
T 1nv8_A 152 TDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFK---EKFASIEMILSNPPYVKSSA--HLPKDVL-FEPPEALFGGE 225 (284)
T ss_dssp EESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGG---GGTTTCCEEEECCCCBCGGG--SCTTSCC-CSCHHHHBCTT
T ss_pred EECCHHHHHHHHHHHHHcCCCCceEEEECcchhhcc---cccCCCCEEEEcCCCCCccc--ccChhhc-cCcHHHhcCCC
Confidence 999999999999999999998889999999998654 478 99999999999887 7888998 99999999999
Q ss_pred CcHHHHHHHHHHHhcccCCCCC
Q 020573 303 DGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 303 dGl~~~~~il~~a~~~LkpgG~ 324 (324)
||+++++.++. +.|+|||+
T Consensus 226 dgl~~~~~i~~---~~l~pgG~ 244 (284)
T 1nv8_A 226 DGLDFYREFFG---RYDTSGKI 244 (284)
T ss_dssp TSCHHHHHHHH---HCCCTTCE
T ss_pred cHHHHHHHHHH---hcCCCCCE
Confidence 99988777741 67889995
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-37 Score=281.99 Aligned_cols=231 Identities=29% Similarity=0.368 Sum_probs=196.5
Q ss_pred HHHHHHHHHHHhhhccccccCCCCCCCccchHHHHHHHHHhhcCCCCCcccccccCCcccccCChhHHHHHHHHHHHHhc
Q 020573 66 LKKWHNWAKALASSVRSTFADSDNGPDSSILFRELNWLVEDSLEDPSLIPQLGFQNNSQSVRLRIGLDELYGLWKQRIEK 145 (324)
Q Consensus 66 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ll~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~r~~~ 145 (324)
+.+|++|+..... +. + . ...++++|++++++.+...+.+. ....++.+..+.++.+.+|+..
T Consensus 3 ~~~~~~~~~~~l~--~~-----~----~--~~~~a~~ll~~~~~~~~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~ 64 (276)
T 2b3t_A 3 YQHWLREAISQLQ--AS-----E----S--PRRDAEILLEHVTGRGRTFILAF-----GETQLTDEQCQQLDALLTRRRD 64 (276)
T ss_dssp HHHHHHHHHHTTT--TS-----S----C--HHHHHHHHHHHHHTCCHHHHHHT-----TTCBCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhc--CC-----C----C--cHHHHHHHHHHHhCCCHHHHHhc-----cCCCCCHHHHHHHHHHHHHHHc
Confidence 6678888876641 11 1 1 23789999999999875433311 1234666667777778888889
Q ss_pred CCCceeEEecccccCeeeeeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEE
Q 020573 146 RKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIA 225 (324)
Q Consensus 146 ~~pl~yi~g~~~f~~l~~~v~~~vliPrp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~g 225 (324)
++|++|++|..+|++..|.+++++|+|||+|+.+++.+++.+ . .++.+|||+|||+|++++.+++.+ +..+|+|
T Consensus 65 ~~p~~~i~g~~~f~~~~~~~~~~~~ipr~~te~l~~~~l~~~-~----~~~~~vLDlG~GsG~~~~~la~~~-~~~~v~~ 138 (276)
T 2b3t_A 65 GEPIAHLTGVREFWSLPLFVSPATLIPRPDTECLVEQALARL-P----EQPCRILDLGTGTGAIALALASER-PDCEIIA 138 (276)
T ss_dssp TCCHHHHSCEEEETTEEEECCTTSCCCCTTHHHHHHHHHHHS-C----SSCCEEEEETCTTSHHHHHHHHHC-TTSEEEE
T ss_pred CCChhHeeeeeEECCceEEeCCCCcccCchHHHHHHHHHHhc-c----cCCCEEEEecCCccHHHHHHHHhC-CCCEEEE
Confidence 999999999999999999999999999999999999999876 2 245699999999999999999886 7789999
Q ss_pred EeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcH
Q 020573 226 VDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGL 305 (324)
Q Consensus 226 vDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl 305 (324)
+|+|+.+++.|++|++.+++. +++++++|+++.+. .++||+|++||||++..+ ..+.+++..|+|..|+++|.+|+
T Consensus 139 vD~s~~~l~~a~~n~~~~~~~-~v~~~~~d~~~~~~--~~~fD~Iv~npPy~~~~~-~~l~~~v~~~~p~~al~~~~~g~ 214 (276)
T 2b3t_A 139 VDRMPDAVSLAQRNAQHLAIK-NIHILQSDWFSALA--GQQFAMIVSNPPYIDEQD-PHLQQGDVRFEPLTALVAADSGM 214 (276)
T ss_dssp ECSSHHHHHHHHHHHHHHTCC-SEEEECCSTTGGGT--TCCEEEEEECCCCBCTTC-HHHHSSGGGSSCSTTTBCHHHHT
T ss_pred EECCHHHHHHHHHHHHHcCCC-ceEEEEcchhhhcc--cCCccEEEECCCCCCccc-cccChhhhhcCcHHHHcCCCcHH
Confidence 999999999999999999986 59999999988653 368999999999998877 67888999999999999999999
Q ss_pred HHHHHHHHHHhcccCCCCC
Q 020573 306 DYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 306 ~~~~~il~~a~~~LkpgG~ 324 (324)
+.++.+++.+.++|||||+
T Consensus 215 ~~~~~~l~~~~~~LkpgG~ 233 (276)
T 2b3t_A 215 ADIVHIIEQSRNALVSGGF 233 (276)
T ss_dssp HHHHHHHHHHGGGEEEEEE
T ss_pred HHHHHHHHHHHHhcCCCCE
Confidence 9999999999999999995
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.8e-27 Score=207.22 Aligned_cols=156 Identities=37% Similarity=0.527 Sum_probs=99.7
Q ss_pred eeeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHH
Q 020573 163 LSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR 242 (324)
Q Consensus 163 ~~v~~~vliPrp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~ 242 (324)
|.+++++|+||++|+.+++.+++.+ .. ..++.+|||+|||+|.+++.+++.. ++.+|+|+|+|+.+++.|++|+..
T Consensus 1 f~~~~~~~~p~~~~~~~~~~~~~~l-~~--~~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~~~~~~~~a~~~~~~ 76 (215)
T 4dzr_A 1 FEVGPDCLIPRPDTEVLVEEAIRFL-KR--MPSGTRVIDVGTGSGCIAVSIALAC-PGVSVTAVDLSMDALAVARRNAER 76 (215)
T ss_dssp CBCSGGGGSCCHHHHHHHHHHHHHH-TT--CCTTEEEEEEESSBCHHHHHHHHHC-TTEEEEEEECC-------------
T ss_pred CcCCCCccCCCccHHHHHHHHHHHh-hh--cCCCCEEEEecCCHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHHHH
Confidence 5688999999999999999999887 21 1356799999999999999999985 778999999999999999999998
Q ss_pred cCCCCcEEEEEccccccccc---CCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhccc
Q 020573 243 YGLQDIIEIRQGSWFGKLKD---VEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASML 319 (324)
Q Consensus 243 ~gl~~rv~~~~gD~~~~l~~---~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~L 319 (324)
+++ +++++++|+.+.+.. ..++||+|++||||+...++..+..++..|+|..++.+|.+|++.+..+++.+.++|
T Consensus 77 ~~~--~~~~~~~d~~~~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L 154 (215)
T 4dzr_A 77 FGA--VVDWAAADGIEWLIERAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVL 154 (215)
T ss_dssp --------CCHHHHHHHHHHHHHTTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGB
T ss_pred hCC--ceEEEEcchHhhhhhhhhccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHh
Confidence 887 599999999875442 126899999999999999999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 020573 320 KPDKW 324 (324)
Q Consensus 320 kpgG~ 324 (324)
||||+
T Consensus 155 kpgG~ 159 (215)
T 4dzr_A 155 ARGRA 159 (215)
T ss_dssp CSSSE
T ss_pred cCCCe
Confidence 99995
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=99.88 E-value=1.2e-22 Score=184.27 Aligned_cols=165 Identities=18% Similarity=0.252 Sum_probs=116.3
Q ss_pred cccCeeeeeeCCccccc----chHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHH
Q 020573 157 HWRDLVLSVEEGVFIPR----PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLA 232 (324)
Q Consensus 157 ~f~~l~~~v~~~vliPr----p~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~a 232 (324)
.|++..+.+.+++|+|+ ++++.+++.+++.+ .. ...++.+|||+|||+|.+++.+++.. ++.+|+|+|+|+.+
T Consensus 25 ~~~~~~~~~~~~~~~p~~~~r~~~~~~~~~~~~~~-~~-~~~~~~~vLDlG~G~G~~~~~la~~~-~~~~v~gvD~s~~~ 101 (254)
T 2h00_A 25 EDFGLSIDIPLERLIPTVPLRLNYIHWVEDLIGHQ-DS-DKSTLRRGIDIGTGASCIYPLLGATL-NGWYFLATEVDDMC 101 (254)
T ss_dssp HHHCCCCCCCTTSCCCCHHHHHHHHHHHHHHHCCC-CG-GGCCCCEEEEESCTTTTHHHHHHHHH-HCCEEEEEESCHHH
T ss_pred HcCCeeeecCccccCCCccchHHHHHHHHHHHhhc-cc-cCCCCCEEEEeCCChhHHHHHHHHhC-CCCeEEEEECCHHH
Confidence 45688899999999998 77777777766544 11 00245699999999999999999886 56899999999999
Q ss_pred HHHHHHHHHHcCCCCcEEEEEccccc----ccccC-CCCeeEEEEcCCCCCCC-Ccccc-hhhhhcccccccccCCC---
Q 020573 233 AAVAAFNAQRYGLQDIIEIRQGSWFG----KLKDV-EGKLSGVVSNPPYIPSD-DISGL-QVEVGKHEPRLALDGGV--- 302 (324)
Q Consensus 233 l~~Ar~N~~~~gl~~rv~~~~gD~~~----~l~~~-~~~fDlIVsNPPYi~~~-~~~~l-~~ev~~~eP~~aL~gg~--- 302 (324)
++.|++|++.+++.++++++++|..+ .+... .++||+|++||||+... +...+ ..++..|+|..++.++.
T Consensus 102 ~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 181 (254)
T 2h00_A 102 FNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEI 181 (254)
T ss_dssp HHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEEEECCCCC-------------------------CTTTT
T ss_pred HHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccEEEECCCCccCcchhcccccccccccCCHHHHhhhHHHH
Confidence 99999999999998889999999654 22211 15899999999999765 33333 24566788888887765
Q ss_pred ----CcHHHHHHHHHHHhcccCCCCC
Q 020573 303 ----DGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 303 ----dGl~~~~~il~~a~~~LkpgG~ 324 (324)
.++.++..+++.+.++|+++|+
T Consensus 182 LkpgG~l~~~~~~~~~~~~~l~~~g~ 207 (254)
T 2h00_A 182 MAEGGELEFVKRIIHDSLQLKKRLRW 207 (254)
T ss_dssp HHHHTHHHHHHHHHHHHHHHGGGBSC
T ss_pred EecCCEEEEEHHHHHHHHhcccceEE
Confidence 7789999999999999998875
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.87 E-value=4.6e-22 Score=177.31 Aligned_cols=149 Identities=17% Similarity=0.202 Sum_probs=113.7
Q ss_pred cccCeeeeeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCC-ccHHHHHHHHHhCCCcEEEEEeCCHHHHHH
Q 020573 157 HWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTG-SGAIAIGIARVLGSKGSIIAVDLNPLAAAV 235 (324)
Q Consensus 157 ~f~~l~~~v~~~vliPrp~te~lve~l~~~l~~~~~~~~~~~VLDLGcG-sG~iai~la~~~~p~~~V~gvDis~~al~~ 235 (324)
.|++..+.+.+++++|+++++.++ +...+ .++.+|||+||| +|.+++.+++.. ..+|+|+|+|+.+++.
T Consensus 25 ~~~~~~~~~~~~~~~p~~~~~~l~--~~~~~------~~~~~vLDlG~G~~G~~~~~la~~~--~~~v~~vD~s~~~~~~ 94 (230)
T 3evz_A 25 ALFGLDIEYHPKGLVTTPISRYIF--LKTFL------RGGEVALEIGTGHTAMMALMAEKFF--NCKVTATEVDEEFFEY 94 (230)
T ss_dssp HHHCCCCCCCTTSCCCCHHHHHHH--HHTTC------CSSCEEEEECCTTTCHHHHHHHHHH--CCEEEEEECCHHHHHH
T ss_pred HhcCCceecCCCeEeCCCchhhhH--hHhhc------CCCCEEEEcCCCHHHHHHHHHHHhc--CCEEEEEECCHHHHHH
Confidence 466788889999999999998774 11111 246799999999 999999999985 5899999999999999
Q ss_pred HHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHH
Q 020573 236 AAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGT 315 (324)
Q Consensus 236 Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a 315 (324)
|++|++.+++ +++++++|+........++||+|++||||....+. ..++|..++.++.+|++.+..+++.+
T Consensus 95 a~~~~~~~~~--~v~~~~~d~~~~~~~~~~~fD~I~~npp~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~l~~~ 165 (230)
T 3evz_A 95 ARRNIERNNS--NVRLVKSNGGIIKGVVEGTFDVIFSAPPYYDKPLG-------RVLTEREAIGGGKYGEEFSVKLLEEA 165 (230)
T ss_dssp HHHHHHHTTC--CCEEEECSSCSSTTTCCSCEEEEEECCCCC----------------------CCSSSCHHHHHHHHHH
T ss_pred HHHHHHHhCC--CcEEEeCCchhhhhcccCceeEEEECCCCcCCccc-------cccChhhhhccCccchHHHHHHHHHH
Confidence 9999999998 59999999643221123789999999999976542 13678889999999999999999999
Q ss_pred hcccCCCCC
Q 020573 316 ASMLKPDKW 324 (324)
Q Consensus 316 ~~~LkpgG~ 324 (324)
.++|||||+
T Consensus 166 ~~~LkpgG~ 174 (230)
T 3evz_A 166 FDHLNPGGK 174 (230)
T ss_dssp GGGEEEEEE
T ss_pred HHHhCCCeE
Confidence 999999995
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.80 E-value=3.3e-19 Score=154.57 Aligned_cols=137 Identities=19% Similarity=0.202 Sum_probs=106.7
Q ss_pred cccCeeeeeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHH
Q 020573 157 HWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVA 236 (324)
Q Consensus 157 ~f~~l~~~v~~~vliPrp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~A 236 (324)
.|.|..+.+.+ ..+||.++.+.+.+.+.+ ......++.+|||+|||+|.+++.+++. +..+|+|+|+|+.+++.|
T Consensus 9 ~~~g~~l~~~~--~~~rp~~~~~~~~l~~~l-~~~~~~~~~~vLDlgcG~G~~~~~~~~~--~~~~v~~vD~~~~~~~~a 83 (189)
T 3p9n_A 9 VAGGRRIAVPP--RGTRPTTDRVRESLFNIV-TARRDLTGLAVLDLYAGSGALGLEALSR--GAASVLFVESDQRSAAVI 83 (189)
T ss_dssp TTTTCEEECCS--CCC---CHHHHHHHHHHH-HHHSCCTTCEEEEETCTTCHHHHHHHHT--TCSEEEEEECCHHHHHHH
T ss_pred ccCCcEecCCC--CCCccCcHHHHHHHHHHH-HhccCCCCCEEEEeCCCcCHHHHHHHHC--CCCeEEEEECCHHHHHHH
Confidence 47788888877 678888888888888877 3211235679999999999999988874 457999999999999999
Q ss_pred HHHHHHcCCCCcEEEEEcccccccccC-CCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHH
Q 020573 237 AFNAQRYGLQDIIEIRQGSWFGKLKDV-EGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGT 315 (324)
Q Consensus 237 r~N~~~~gl~~rv~~~~gD~~~~l~~~-~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a 315 (324)
++|++.+++ ++++++++|+.+..... .++||+|++||||... .+.+..+++.+
T Consensus 84 ~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~fD~i~~~~p~~~~-------------------------~~~~~~~l~~~ 137 (189)
T 3p9n_A 84 ARNIEALGL-SGATLRRGAVAAVVAAGTTSPVDLVLADPPYNVD-------------------------SADVDAILAAL 137 (189)
T ss_dssp HHHHHHHTC-SCEEEEESCHHHHHHHCCSSCCSEEEECCCTTSC-------------------------HHHHHHHHHHH
T ss_pred HHHHHHcCC-CceEEEEccHHHHHhhccCCCccEEEECCCCCcc-------------------------hhhHHHHHHHH
Confidence 999999998 56999999998754322 4689999999999631 12344677777
Q ss_pred hc--ccCCCCC
Q 020573 316 AS--MLKPDKW 324 (324)
Q Consensus 316 ~~--~LkpgG~ 324 (324)
.+ +|||||+
T Consensus 138 ~~~~~L~pgG~ 148 (189)
T 3p9n_A 138 GTNGWTREGTV 148 (189)
T ss_dssp HHSSSCCTTCE
T ss_pred HhcCccCCCeE
Confidence 77 9999995
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=2e-18 Score=169.40 Aligned_cols=145 Identities=19% Similarity=0.199 Sum_probs=119.8
Q ss_pred CChhHHHHHHHHHHHHh-------cCCCceeEEeccccc---CeeeeeeCCcccc--cchHHHHHHHHHHHhhhcCCCCC
Q 020573 128 LRIGLDELYGLWKQRIE-------KRKPFQYLVGCEHWR---DLVLSVEEGVFIP--RPETELMVDLVSDVLVRDNDGLR 195 (324)
Q Consensus 128 l~~~~~~~~~~~~~r~~-------~~~pl~yi~g~~~f~---~l~~~v~~~vliP--rp~te~lve~l~~~l~~~~~~~~ 195 (324)
++....+.+..+.+++. .++|++|+.|...|+ ++.|.++++.|++ ++.++.+++.+.+++ ....
T Consensus 211 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~g~~~~~~~~~f~q~n~~~~e~l~~~~~~~l----~~~~ 286 (433)
T 1uwv_A 211 LSSADREKLERFSHSEGLDLYLAPDSEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWL----DVQP 286 (433)
T ss_dssp CCHHHHHHHHHHHHHHTCEEEEESSSSCCEEEECCCCEEEETTEEEECCSSSCCCSBHHHHHHHHHHHHHHH----TCCT
T ss_pred CCHHHHHHHHHHhhcccEEEEEECCCCeEEEEeCCCcEEEECCEEEEECcccccccCHHHHHHHHHHHHHhh----cCCC
Confidence 33444455555655543 578899999998887 9999999999999 678999999999887 2334
Q ss_pred CCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccccc---CCCCeeEEEE
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKD---VEGKLSGVVS 272 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~---~~~~fDlIVs 272 (324)
+.+|||+|||+|.+++.+++. ..+|+|+|+|+.|++.|++|++.+++. +++|+++|+.+.+.. ..++||+|++
T Consensus 287 ~~~VLDlgcG~G~~~~~la~~---~~~V~gvD~s~~al~~A~~n~~~~~~~-~v~f~~~d~~~~l~~~~~~~~~fD~Vv~ 362 (433)
T 1uwv_A 287 EDRVLDLFCGMGNFTLPLATQ---AASVVGVEGVPALVEKGQQNARLNGLQ-NVTFYHENLEEDVTKQPWAKNGFDKVLL 362 (433)
T ss_dssp TCEEEEESCTTTTTHHHHHTT---SSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCTTSCCSSSGGGTTCCSEEEE
T ss_pred CCEEEECCCCCCHHHHHHHhh---CCEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEECCHHHHhhhhhhhcCCCCEEEE
Confidence 579999999999999999986 479999999999999999999999987 599999999885432 2358999999
Q ss_pred cCCCCCCC
Q 020573 273 NPPYIPSD 280 (324)
Q Consensus 273 NPPYi~~~ 280 (324)
||||....
T Consensus 363 dPPr~g~~ 370 (433)
T 1uwv_A 363 DPARAGAA 370 (433)
T ss_dssp CCCTTCCH
T ss_pred CCCCccHH
Confidence 99998643
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.77 E-value=6.8e-19 Score=151.04 Aligned_cols=115 Identities=22% Similarity=0.253 Sum_probs=97.4
Q ss_pred cccCeeeeeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHH
Q 020573 157 HWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVA 236 (324)
Q Consensus 157 ~f~~l~~~v~~~vliPrp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~A 236 (324)
.|++..+.+.++. .+||.++.+++.+.+.+ .. ..++.+|||+|||+|.+++.+++. +..+|+|+|+|+.+++.|
T Consensus 10 ~~~~~~~~~~~~~-~~rp~~~~~~~~~~~~l-~~--~~~~~~vLD~GcG~G~~~~~~~~~--~~~~v~~vD~~~~~~~~a 83 (187)
T 2fhp_A 10 EYGGRRLKALDGD-NTRPTTDKVKESIFNMI-GP--YFDGGMALDLYSGSGGLAIEAVSR--GMDKSICIEKNFAALKVI 83 (187)
T ss_dssp TTTTCBCCCCCCC-SSCCCCHHHHHHHHHHH-CS--CCSSCEEEETTCTTCHHHHHHHHT--TCSEEEEEESCHHHHHHH
T ss_pred cccCccccCCCCC-CcCcCHHHHHHHHHHHH-Hh--hcCCCCEEEeCCccCHHHHHHHHc--CCCEEEEEECCHHHHHHH
Confidence 6778888888876 88999999999988877 21 235679999999999999998884 457999999999999999
Q ss_pred HHHHHHcCCCCcEEEEEccccccccc---CCCCeeEEEEcCCCC
Q 020573 237 AFNAQRYGLQDIIEIRQGSWFGKLKD---VEGKLSGVVSNPPYI 277 (324)
Q Consensus 237 r~N~~~~gl~~rv~~~~gD~~~~l~~---~~~~fDlIVsNPPYi 277 (324)
++|++.+++.++++++++|+.+.... ..++||+|++||||.
T Consensus 84 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~~~~~~ 127 (187)
T 2fhp_A 84 KENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLLDPPYA 127 (187)
T ss_dssp HHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECCCGG
T ss_pred HHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEEECCCCC
Confidence 99999999877899999999874431 136899999999986
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.75 E-value=4.6e-18 Score=154.98 Aligned_cols=145 Identities=23% Similarity=0.247 Sum_probs=102.9
Q ss_pred CeeeeeeCCcccccchHHHHHHHHHHHhhhcCCCC-CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 020573 160 DLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGL-RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF 238 (324)
Q Consensus 160 ~l~~~v~~~vliPrp~te~lve~l~~~l~~~~~~~-~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~ 238 (324)
++.+...+..+.+..++.++..+ + ... ++.+|||+|||+|.+++.+++.. + .+|+|+|+++.+++.|++
T Consensus 21 ~~~i~q~~~~~~~~~d~~ll~~~----~----~~~~~~~~vLDlG~G~G~~~~~la~~~-~-~~v~gvDi~~~~~~~a~~ 90 (259)
T 3lpm_A 21 NLRIIQSPSVFSFSIDAVLLAKF----S----YLPIRKGKIIDLCSGNGIIPLLLSTRT-K-AKIVGVEIQERLADMAKR 90 (259)
T ss_dssp TEEEEEBTTTBCCCHHHHHHHHH----C----CCCSSCCEEEETTCTTTHHHHHHHTTC-C-CEEEEECCSHHHHHHHHH
T ss_pred CEEEEeCCCCccCcHHHHHHHHH----h----cCCCCCCEEEEcCCchhHHHHHHHHhc-C-CcEEEEECCHHHHHHHHH
Confidence 56676777777776555444332 2 222 46799999999999999999974 3 499999999999999999
Q ss_pred HHHHcCCCCcEEEEEcccccccccC-CCCeeEEEEcCCCCCCCCcccch----hhhhcccccccccCCCCcHHHHHHHHH
Q 020573 239 NAQRYGLQDIIEIRQGSWFGKLKDV-EGKLSGVVSNPPYIPSDDISGLQ----VEVGKHEPRLALDGGVDGLDYLLHLCN 313 (324)
Q Consensus 239 N~~~~gl~~rv~~~~gD~~~~l~~~-~~~fDlIVsNPPYi~~~~~~~l~----~ev~~~eP~~aL~gg~dGl~~~~~il~ 313 (324)
|++.+++.++++++++|+.+..... .++||+|++||||.......... ....+| .....+..+++
T Consensus 91 n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~----------~~~~~~~~~l~ 160 (259)
T 3lpm_A 91 SVAYNQLEDQIEIIEYDLKKITDLIPKERADIVTCNPPYFATPDTSLKNTNEHFRIARH----------EVMCTLEDTIR 160 (259)
T ss_dssp HHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEEEECCCC---------------------------------HHHHHHHH
T ss_pred HHHHCCCcccEEEEECcHHHhhhhhccCCccEEEECCCCCCCccccCCCCchHHHhhhc----------cccCCHHHHHH
Confidence 9999999989999999998865322 47899999999998652211111 122222 23455678999
Q ss_pred HHhcccCCCCC
Q 020573 314 GTASMLKPDKW 324 (324)
Q Consensus 314 ~a~~~LkpgG~ 324 (324)
.+.++|||||+
T Consensus 161 ~~~~~LkpgG~ 171 (259)
T 3lpm_A 161 VAASLLKQGGK 171 (259)
T ss_dssp HHHHHEEEEEE
T ss_pred HHHHHccCCcE
Confidence 99999999995
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.74 E-value=2.7e-18 Score=146.78 Aligned_cols=106 Identities=20% Similarity=0.223 Sum_probs=80.5
Q ss_pred CCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCC
Q 020573 167 EGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQ 246 (324)
Q Consensus 167 ~~vliPrp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~ 246 (324)
+...++||.++.+.+.+.+.+ .. ...+.+|||+|||+|.+++.+++. +..+|+|+|+|+.+++.|++|++.+++.
T Consensus 6 p~~~~~rp~~~~~~~~~~~~l-~~--~~~~~~vLDlGcG~G~~~~~l~~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~ 80 (177)
T 2esr_A 6 LDGKITRPTSDKVRGAIFNMI-GP--YFNGGRVLDLFAGSGGLAIEAVSR--GMSAAVLVEKNRKAQAIIQDNIIMTKAE 80 (177)
T ss_dssp ------------CHHHHHHHH-CS--CCCSCEEEEETCTTCHHHHHHHHT--TCCEEEEECCCHHHHHHHHHHHHTTTCG
T ss_pred CCCCCCCcCHHHHHHHHHHHH-Hh--hcCCCeEEEeCCCCCHHHHHHHHc--CCCEEEEEECCHHHHHHHHHHHHHcCCC
Confidence 345678999999999988877 21 235679999999999999999986 4579999999999999999999999987
Q ss_pred CcEEEEEcccccccccCCCCeeEEEEcCCCC
Q 020573 247 DIIEIRQGSWFGKLKDVEGKLSGVVSNPPYI 277 (324)
Q Consensus 247 ~rv~~~~gD~~~~l~~~~~~fDlIVsNPPYi 277 (324)
++++++++|+.+.+....++||+|++||||.
T Consensus 81 ~~~~~~~~d~~~~~~~~~~~fD~i~~~~~~~ 111 (177)
T 2esr_A 81 NRFTLLKMEAERAIDCLTGRFDLVFLDPPYA 111 (177)
T ss_dssp GGEEEECSCHHHHHHHBCSCEEEEEECCSSH
T ss_pred CceEEEECcHHHhHHhhcCCCCEEEECCCCC
Confidence 7899999999875443446799999999984
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.8e-18 Score=170.41 Aligned_cols=154 Identities=16% Similarity=0.154 Sum_probs=108.4
Q ss_pred HHHHHHHHhcCCCceeEE----------ecccccCeeeeeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCC
Q 020573 136 YGLWKQRIEKRKPFQYLV----------GCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTG 205 (324)
Q Consensus 136 ~~~~~~r~~~~~pl~yi~----------g~~~f~~l~~~v~~~vliPrp~te~lve~l~~~l~~~~~~~~~~~VLDLGcG 205 (324)
+..+.+++.+++|++|++ +...|++..+. .+.++++++.++.+.+.+++.+ . ..++.+|||+|||
T Consensus 94 ~~~ll~~~~~~~pl~~i~~~r~~~~~~~~~~~~y~~~~~-~~~~L~d~~~t~~~~~~il~~l-~---~~~~~~VLDiGcG 168 (480)
T 3b3j_A 94 FYNILKTCRGHTLERSVFSERTEESSAVQYFQFYGYLSQ-QQNMMQDYVRTGTYQRAILQNH-T---DFKDKIVLDVGCG 168 (480)
T ss_dssp --------------------------CCEEEEGGGCSCH-HHHHHHHHHHHHHHHHHHHHTG-G---GTTTCEEEEESCS
T ss_pred HHHHHHHHHcCCcHHHHHhhhhhhhchhhHHHHHhhhcc-chhhhcChHhHHHHHHHHHHhh-h---hcCCCEEEEecCc
Confidence 344445667889999999 66677777665 7889999999999999888766 2 2246799999999
Q ss_pred ccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcCC-CCCCCCccc
Q 020573 206 SGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPP-YIPSDDISG 284 (324)
Q Consensus 206 sG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNPP-Yi~~~~~~~ 284 (324)
+|.+++.+++. +..+|+|+|+|+ +++.|++|++.+++.++++++++|+.+.. ..++||+||+|++ |+...
T Consensus 169 tG~la~~la~~--~~~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~~~--~~~~fD~Ivs~~~~~~~~~---- 239 (480)
T 3b3j_A 169 SGILSFFAAQA--GARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVS--LPEQVDIIISEPMGYMLFN---- 239 (480)
T ss_dssp TTHHHHHHHHT--TCSEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTTCC--CSSCEEEEECCCCHHHHTC----
T ss_pred ccHHHHHHHHc--CCCEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchhhCc--cCCCeEEEEEeCchHhcCc----
Confidence 99999999884 567999999998 99999999999999888999999998731 2358999999988 32110
Q ss_pred chhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 285 LQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 285 l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
+.+..++..+.++|||||+
T Consensus 240 ---------------------e~~~~~l~~~~~~LkpgG~ 258 (480)
T 3b3j_A 240 ---------------------ERMLESYLHAKKYLKPSGN 258 (480)
T ss_dssp ---------------------HHHHHHHHHGGGGEEEEEE
T ss_pred ---------------------HHHHHHHHHHHHhcCCCCE
Confidence 1122456678899999984
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.73 E-value=3.8e-18 Score=154.50 Aligned_cols=112 Identities=22% Similarity=0.164 Sum_probs=91.6
Q ss_pred CCCeEEEEcCCccHHHHHHHHH--hCCCcEEEEEeCCHHHHHHHHHHHHHc---CCCCc---------------------
Q 020573 195 RDGFWVDLGTGSGAIAIGIARV--LGSKGSIIAVDLNPLAAAVAAFNAQRY---GLQDI--------------------- 248 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~--~~p~~~V~gvDis~~al~~Ar~N~~~~---gl~~r--------------------- 248 (324)
.+.+|||+|||+|.+++.+++. . +..+|+|+|+|+.+++.|++|+..+ ++.++
T Consensus 51 ~~~~vLD~gcGsG~~~~~la~~~~~-~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (250)
T 1o9g_A 51 GPVTLWDPCCGSGYLLTVLGLLHRR-SLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQ 129 (250)
T ss_dssp SCEEEEETTCTTSHHHHHHHHHTGG-GEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHhcc-CCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhh
Confidence 4569999999999999999987 4 5679999999999999999999876 55433
Q ss_pred ----EE-------------EEEccccccccc----CCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHH
Q 020573 249 ----IE-------------IRQGSWFGKLKD----VEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDY 307 (324)
Q Consensus 249 ----v~-------------~~~gD~~~~l~~----~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~ 307 (324)
++ +.++|+++.... ..++||+|++||||+....+.. ++|.+.
T Consensus 130 ~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~-----------------~~~~~~ 192 (250)
T 1o9g_A 130 AARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEG-----------------QVPGQP 192 (250)
T ss_dssp HHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSS-----------------CCCHHH
T ss_pred hhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccc-----------------cccccH
Confidence 66 999999886521 2248999999999986543211 367899
Q ss_pred HHHHHHHHhcccCCCCC
Q 020573 308 LLHLCNGTASMLKPDKW 324 (324)
Q Consensus 308 ~~~il~~a~~~LkpgG~ 324 (324)
+..+++++.++|||||+
T Consensus 193 ~~~~l~~~~~~LkpgG~ 209 (250)
T 1o9g_A 193 VAGLLRSLASALPAHAV 209 (250)
T ss_dssp HHHHHHHHHHHSCTTCE
T ss_pred HHHHHHHHHHhcCCCcE
Confidence 99999999999999995
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.73 E-value=9.3e-18 Score=143.74 Aligned_cols=117 Identities=22% Similarity=0.344 Sum_probs=93.4
Q ss_pred CcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCC
Q 020573 168 GVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQD 247 (324)
Q Consensus 168 ~vliPrp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~ 247 (324)
.+|+|+++++.+++.+. .. ..++.+|||+|||+|.+++.+++. . +|+|+|+|+.|++. .+
T Consensus 2 ~v~~P~~~~~~l~~~l~-~~-----~~~~~~vLD~GcG~G~~~~~l~~~---~-~v~gvD~s~~~~~~----------~~ 61 (170)
T 3q87_B 2 DWYEPGEDTYTLMDALE-RE-----GLEMKIVLDLGTSTGVITEQLRKR---N-TVVSTDLNIRALES----------HR 61 (170)
T ss_dssp CSCCCCHHHHHHHHHHH-HH-----TCCSCEEEEETCTTCHHHHHHTTT---S-EEEEEESCHHHHHT----------CS
T ss_pred cccCcCccHHHHHHHHH-hh-----cCCCCeEEEeccCccHHHHHHHhc---C-cEEEEECCHHHHhc----------cc
Confidence 47999999999999843 32 123569999999999999999986 2 99999999999987 34
Q ss_pred cEEEEEcccccccccCCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 248 IIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 248 rv~~~~gD~~~~l~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
+++++++|+.+++.. ++||+|++||||....+... +.+|.+|++.++.+++.+ |||+
T Consensus 62 ~~~~~~~d~~~~~~~--~~fD~i~~n~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~l-----pgG~ 118 (170)
T 3q87_B 62 GGNLVRADLLCSINQ--ESVDVVVFNPPYVPDTDDPI-------------IGGGYLGREVIDRFVDAV-----TVGM 118 (170)
T ss_dssp SSCEEECSTTTTBCG--GGCSEEEECCCCBTTCCCTT-------------TBCCGGGCHHHHHHHHHC-----CSSE
T ss_pred CCeEEECChhhhccc--CCCCEEEECCCCccCCcccc-------------ccCCcchHHHHHHHHhhC-----CCCE
Confidence 699999999886543 68999999999986554211 667888888888777654 8884
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.73 E-value=5.1e-18 Score=155.31 Aligned_cols=121 Identities=19% Similarity=0.169 Sum_probs=87.5
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHH---cCCCCcEEEEEcccccccc------cCCC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR---YGLQDIIEIRQGSWFGKLK------DVEG 265 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~---~gl~~rv~~~~gD~~~~l~------~~~~ 265 (324)
++.+|||+|||+|.+++.+++.. +..+|+|+|+++.+++.|++|++. +++.++++++++|+.+... ...+
T Consensus 36 ~~~~VLDlG~G~G~~~l~la~~~-~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~ 114 (260)
T 2ozv_A 36 RACRIADLGAGAGAAGMAVAARL-EKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPDE 114 (260)
T ss_dssp SCEEEEECCSSSSHHHHHHHHHC-TTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCTT
T ss_pred CCCEEEEeCChHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCCC
Confidence 45699999999999999999986 778999999999999999999998 8888889999999987632 1246
Q ss_pred CeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 266 KLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 266 ~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
+||+|++||||..... ...++..+ ..|+..+.++ +..+++.+.++|||||+
T Consensus 115 ~fD~Vv~nPPy~~~~~--~~~~~~~~---~~a~~~~~~~---~~~~l~~~~~~LkpgG~ 165 (260)
T 2ozv_A 115 HFHHVIMNPPYNDAGD--RRTPDALK---AEAHAMTEGL---FEDWIRTASAIMVSGGQ 165 (260)
T ss_dssp CEEEEEECCCC--------------------------CC---HHHHHHHHHHHEEEEEE
T ss_pred CcCEEEECCCCcCCCC--CCCcCHHH---HHHhhcCcCC---HHHHHHHHHHHcCCCCE
Confidence 8999999999987641 22222211 2333333333 56789999999999994
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.72 E-value=1.1e-17 Score=147.14 Aligned_cols=115 Identities=19% Similarity=0.204 Sum_probs=85.4
Q ss_pred cccCeeeeeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHH
Q 020573 157 HWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVA 236 (324)
Q Consensus 157 ~f~~l~~~v~~~vliPrp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~A 236 (324)
.|.+..+.+.++ ...||.++.+.+.+.+++... .++.+|||+|||+|.+++.++.. ...+|+|+|+|+.+++.|
T Consensus 19 ~~~g~~l~~~~~-~~~rp~~~~~~~~l~~~l~~~---~~~~~vLDlGcGtG~~~~~~~~~--~~~~v~gvD~s~~~l~~a 92 (201)
T 2ift_A 19 LWRGRKLPVLNS-EGLRPTGDRVKETLFNWLMPY---IHQSECLDGFAGSGSLGFEALSR--QAKKVTFLELDKTVANQL 92 (201)
T ss_dssp TTTTCEEECC----------CHHHHHHHHHHHHH---HTTCEEEETTCTTCHHHHHHHHT--TCSEEEEECSCHHHHHHH
T ss_pred eeCCcEecCCCC-CCcCcCHHHHHHHHHHHHHHh---cCCCeEEEcCCccCHHHHHHHHc--cCCEEEEEECCHHHHHHH
Confidence 577888887665 356777777777777766211 13569999999999999987775 236999999999999999
Q ss_pred HHHHHHcCCC-CcEEEEEcccccccccC-CCC-eeEEEEcCCCC
Q 020573 237 AFNAQRYGLQ-DIIEIRQGSWFGKLKDV-EGK-LSGVVSNPPYI 277 (324)
Q Consensus 237 r~N~~~~gl~-~rv~~~~gD~~~~l~~~-~~~-fDlIVsNPPYi 277 (324)
++|++.+++. ++++++++|+.+.+... .++ ||+|++||||.
T Consensus 93 ~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~~~ 136 (201)
T 2ift_A 93 KKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLDPPFH 136 (201)
T ss_dssp HHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEECCCSS
T ss_pred HHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEECCCCC
Confidence 9999999984 56999999988754331 367 99999999985
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.71 E-value=1.2e-17 Score=146.87 Aligned_cols=119 Identities=17% Similarity=0.206 Sum_probs=90.7
Q ss_pred eeEEecccccCeeeeeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCC
Q 020573 150 QYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLN 229 (324)
Q Consensus 150 ~yi~g~~~f~~l~~~v~~~vliPrp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis 229 (324)
.++.| .|++..+.+..+ ..+||.++.+.+.+.+++... .++.+|||+|||+|.+++.+++.. ..+|+|+|+|
T Consensus 15 ~ii~g--~~~g~~l~~~~~-~~~rp~~~~~~~~l~~~l~~~---~~~~~vLDlgcG~G~~~~~l~~~~--~~~V~~vD~s 86 (202)
T 2fpo_A 15 RIIGG--QWRGRKLPVPDS-PGLRPTTDRVRETLFNWLAPV---IVDAQCLDCFAGSGALGLEALSRY--AAGATLIEMD 86 (202)
T ss_dssp ECCSG--GGTTCEEECCCC-------CHHHHHHHHHHHHHH---HTTCEEEETTCTTCHHHHHHHHTT--CSEEEEECSC
T ss_pred EEEEE--EEcCcEecCCCC-CCCCCCHHHHHHHHHHHHHhh---cCCCeEEEeCCCcCHHHHHHHhcC--CCEEEEEECC
Confidence 34444 477888887665 456888888888887776211 135699999999999999887752 3599999999
Q ss_pred HHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcCCCC
Q 020573 230 PLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYI 277 (324)
Q Consensus 230 ~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNPPYi 277 (324)
+.+++.|++|++.+++ ++++++++|+.+.+....++||+|++||||.
T Consensus 87 ~~~l~~a~~~~~~~~~-~~v~~~~~D~~~~~~~~~~~fD~V~~~~p~~ 133 (202)
T 2fpo_A 87 RAVSQQLIKNLATLKA-GNARVVNSNAMSFLAQKGTPHNIVFVDPPFR 133 (202)
T ss_dssp HHHHHHHHHHHHHTTC-CSEEEECSCHHHHHSSCCCCEEEEEECCSSS
T ss_pred HHHHHHHHHHHHHcCC-CcEEEEECCHHHHHhhcCCCCCEEEECCCCC
Confidence 9999999999999998 5699999998875443346899999999986
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=8.7e-17 Score=155.32 Aligned_cols=135 Identities=22% Similarity=0.344 Sum_probs=110.3
Q ss_pred eeeeeeCCccc---ccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Q 020573 161 LVLSVEEGVFI---PRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAA 237 (324)
Q Consensus 161 l~~~v~~~vli---Prp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar 237 (324)
+.+...+++|. +++.++.+++.+.+.+ .. ...++.+|||+|||+|.+++.+++. +.+|+|+|+|+.+++.|+
T Consensus 198 ~~~~~~pgvFs~~~~d~~t~~ll~~l~~~l-~~-~~~~~~~VLDlGcG~G~~~~~la~~---g~~V~gvDis~~al~~A~ 272 (381)
T 3dmg_A 198 YTFHHLPGVFSAGKVDPASLLLLEALQERL-GP-EGVRGRQVLDLGAGYGALTLPLARM---GAEVVGVEDDLASVLSLQ 272 (381)
T ss_dssp EEEEECTTCTTTTSCCHHHHHHHHHHHHHH-CT-TTTTTCEEEEETCTTSTTHHHHHHT---TCEEEEEESBHHHHHHHH
T ss_pred EEEEeCCCceeCCCCCHHHHHHHHHHHHhh-cc-cCCCCCEEEEEeeeCCHHHHHHHHc---CCEEEEEECCHHHHHHHH
Confidence 46788899999 5688999999888765 11 1234679999999999999999986 369999999999999999
Q ss_pred HHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhc
Q 020573 238 FNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTAS 317 (324)
Q Consensus 238 ~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~ 317 (324)
+|++.+++. ++++++|+.+.... .++||+|++||||.... ....+....+++++.+
T Consensus 273 ~n~~~~~~~--v~~~~~D~~~~~~~-~~~fD~Ii~npp~~~~~---------------------~~~~~~~~~~l~~~~~ 328 (381)
T 3dmg_A 273 KGLEANALK--AQALHSDVDEALTE-EARFDIIVTNPPFHVGG---------------------AVILDVAQAFVNVAAA 328 (381)
T ss_dssp HHHHHTTCC--CEEEECSTTTTSCT-TCCEEEEEECCCCCTTC---------------------SSCCHHHHHHHHHHHH
T ss_pred HHHHHcCCC--eEEEEcchhhcccc-CCCeEEEEECCchhhcc---------------------cccHHHHHHHHHHHHH
Confidence 999999875 89999999886442 46899999999997322 1224556789999999
Q ss_pred ccCCCCC
Q 020573 318 MLKPDKW 324 (324)
Q Consensus 318 ~LkpgG~ 324 (324)
+|||||+
T Consensus 329 ~LkpGG~ 335 (381)
T 3dmg_A 329 RLRPGGV 335 (381)
T ss_dssp HEEEEEE
T ss_pred hcCcCcE
Confidence 9999994
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.70 E-value=4.7e-17 Score=141.32 Aligned_cols=113 Identities=19% Similarity=0.196 Sum_probs=92.3
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNP 274 (324)
++.+|||+|||+|.+++.+++.+++.++|+|+|+|+.+++.|++|++.+++.++++++++|+.+......++||+|++|+
T Consensus 22 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~ 101 (197)
T 3eey_A 22 EGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMFNL 101 (197)
T ss_dssp TTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEEEEE
T ss_pred CCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEEEcC
Confidence 46799999999999999999987667899999999999999999999999877899999998765433457899999999
Q ss_pred CCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 275 PYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
||.+..+.... ...+....+++++.++|||||+
T Consensus 102 ~~~~~~~~~~~-----------------~~~~~~~~~l~~~~~~Lk~gG~ 134 (197)
T 3eey_A 102 GYLPSGDHSIS-----------------TRPETTIQALSKAMELLVTGGI 134 (197)
T ss_dssp SBCTTSCTTCB-----------------CCHHHHHHHHHHHHHHEEEEEE
T ss_pred CcccCcccccc-----------------cCcccHHHHHHHHHHhCcCCCE
Confidence 99765432111 1123455689999999999984
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.2e-17 Score=152.19 Aligned_cols=139 Identities=16% Similarity=0.008 Sum_probs=99.7
Q ss_pred HHHHHHHHhcCCCceeEEecccccCeeeeeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHH
Q 020573 136 YGLWKQRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIAR 215 (324)
Q Consensus 136 ~~~~~~r~~~~~pl~yi~g~~~f~~l~~~v~~~vliPrp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~ 215 (324)
|..+..++.++.|++|+.+...|+...+..+..+++|++ ...+.+|||+|||+|.+++.++.
T Consensus 39 ~~~~l~~~~~~~nl~~i~~~~~~~~~~~~ds~~~l~~~~------------------~~~~~~vLDiG~G~G~~~i~la~ 100 (249)
T 3g89_A 39 LYALLQEASGKVNLTALRGEEEVVVKHFLDSLTLLRLPL------------------WQGPLRVLDLGTGAGFPGLPLKI 100 (249)
T ss_dssp HHHHHHHC----------CHHHHHHHHHHHHHGGGGSSC------------------CCSSCEEEEETCTTTTTHHHHHH
T ss_pred HHHHHHHHhcCCCCceECCHHHHhhceeeechhhhcccc------------------cCCCCEEEEEcCCCCHHHHHHHH
Confidence 334445557789999999988888776666655555532 12456999999999999999999
Q ss_pred HhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc--cCCCCeeEEEEcCCCCCCCCcccchhhhhccc
Q 020573 216 VLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK--DVEGKLSGVVSNPPYIPSDDISGLQVEVGKHE 293 (324)
Q Consensus 216 ~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~--~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~e 293 (324)
.+ ++.+|+|+|+|+++++.|++|++.+++.+ ++++++|+.+... ...++||+|+++- +
T Consensus 101 ~~-~~~~v~~vD~s~~~~~~a~~~~~~~~l~~-v~~~~~d~~~~~~~~~~~~~fD~I~s~a--------------~---- 160 (249)
T 3g89_A 101 VR-PELELVLVDATRKKVAFVERAIEVLGLKG-ARALWGRAEVLAREAGHREAYARAVARA--------------V---- 160 (249)
T ss_dssp HC-TTCEEEEEESCHHHHHHHHHHHHHHTCSS-EEEEECCHHHHTTSTTTTTCEEEEEEES--------------S----
T ss_pred HC-CCCEEEEEECCHHHHHHHHHHHHHhCCCc-eEEEECcHHHhhcccccCCCceEEEECC--------------c----
Confidence 86 78999999999999999999999999976 9999999876432 1236899999951 0
Q ss_pred ccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 294 PRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 294 P~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
..+..+++.+.++|||||+
T Consensus 161 ------------~~~~~ll~~~~~~LkpgG~ 179 (249)
T 3g89_A 161 ------------APLCVLSELLLPFLEVGGA 179 (249)
T ss_dssp ------------CCHHHHHHHHGGGEEEEEE
T ss_pred ------------CCHHHHHHHHHHHcCCCeE
Confidence 0123678889999999984
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.69 E-value=4.6e-17 Score=154.64 Aligned_cols=162 Identities=15% Similarity=0.115 Sum_probs=114.6
Q ss_pred hhHHHHHHHHHHHHhcCCCceeEEecccccCeeeeeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHH
Q 020573 130 IGLDELYGLWKQRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAI 209 (324)
Q Consensus 130 ~~~~~~~~~~~~r~~~~~pl~yi~g~~~f~~l~~~v~~~vliPrp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~i 209 (324)
+.....++.+.++..+ .+.+| ...+.|+....++...+.... ....+.+|||+|||||.+
T Consensus 85 ~~~g~~ye~~~~~~~~-~~~~~---------------g~~~TP~~i~~~~~~ll~~l~----~~~~~~~VlDp~cGsG~~ 144 (344)
T 2f8l_A 85 EEIRKGLQLALLKGMK-HGIQV---------------NHQMTPDSIGFIVAYLLEKVI----QKKKNVSILDPACGTANL 144 (344)
T ss_dssp HHHHHHHHHHHHHHTS-SSCCG---------------GGCCCCHHHHHHHHHHHHHHH----TTCSEEEEEETTCTTSHH
T ss_pred hHHHHHHHHHHHHHhh-ccccc---------------CcCCChHHHHHHHHHHHHHhc----CCCCCCEEEeCCCCccHH
Confidence 3566777777777654 66555 234567766666555443322 112356899999999999
Q ss_pred HHHHHHHhCCC----cEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcCCCCCCCCcccc
Q 020573 210 AIGIARVLGSK----GSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGL 285 (324)
Q Consensus 210 ai~la~~~~p~----~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNPPYi~~~~~~~l 285 (324)
++.+++.+... .+|+|+|+++.++++|+.|+..+|+ ++.+.++|.++... .++||+|++||||.....
T Consensus 145 l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~--~~~i~~~D~l~~~~--~~~fD~Ii~NPPfg~~~~---- 216 (344)
T 2f8l_A 145 LTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ--KMTLLHQDGLANLL--VDPVDVVISDLPVGYYPD---- 216 (344)
T ss_dssp HHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC--CCEEEESCTTSCCC--CCCEEEEEEECCCSEESC----
T ss_pred HHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCC--CceEEECCCCCccc--cCCccEEEECCCCCCcCc----
Confidence 99999986222 7899999999999999999999987 48999999987543 368999999999732111
Q ss_pred hhhhhcccccccccCCCCcHHHH-HHHHHHHhcccCCCCC
Q 020573 286 QVEVGKHEPRLALDGGVDGLDYL-LHLCNGTASMLKPDKW 324 (324)
Q Consensus 286 ~~ev~~~eP~~aL~gg~dGl~~~-~~il~~a~~~LkpgG~ 324 (324)
.....+|++. ..+|...+ ..+++.+.++|||||+
T Consensus 217 ~~~~~~~~~~-----~~~g~~~~~~~~l~~~~~~Lk~gG~ 251 (344)
T 2f8l_A 217 DENAKTFELC-----REEGHSFAHFLFIEQGMRYTKPGGY 251 (344)
T ss_dssp HHHHTTSTTC-----CSSSCEEHHHHHHHHHHHTEEEEEE
T ss_pred hhhhhhcccc-----CCCCcchHHHHHHHHHHHHhCCCCE
Confidence 0112355553 23444433 4689999999999984
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.69 E-value=3.7e-16 Score=133.86 Aligned_cols=139 Identities=23% Similarity=0.315 Sum_probs=106.5
Q ss_pred CceeEEecccccCeeeeeeCCccccc---chHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEE
Q 020573 148 PFQYLVGCEHWRDLVLSVEEGVFIPR---PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSII 224 (324)
Q Consensus 148 pl~yi~g~~~f~~l~~~v~~~vliPr---p~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~ 224 (324)
..+++.+...-..+.+...+++|.|+ ..++.+++. + ...++.+|||+|||+|.++..+++. ..+|+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~----~~~~~~~vLdiG~G~G~~~~~~~~~---~~~v~ 78 (194)
T 1dus_A 10 DVKIVEDILRGKKLKFKTDSGVFSYGKVDKGTKILVEN----V----VVDKDDDILDLGCGYGVIGIALADE---VKSTT 78 (194)
T ss_dssp CEEEEEEEETTEEEEEEEETTSTTTTSCCHHHHHHHHH----C----CCCTTCEEEEETCTTSHHHHHHGGG---SSEEE
T ss_pred cccEEeeecCCCceEEEeCCCcCCccccchHHHHHHHH----c----ccCCCCeEEEeCCCCCHHHHHHHHc---CCeEE
Confidence 44555554333445667788888887 455555443 3 1224679999999999999999886 47999
Q ss_pred EEeCCHHHHHHHHHHHHHcCCCC-cEEEEEcccccccccCCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCC
Q 020573 225 AVDLNPLAAAVAAFNAQRYGLQD-IIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVD 303 (324)
Q Consensus 225 gvDis~~al~~Ar~N~~~~gl~~-rv~~~~gD~~~~l~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~d 303 (324)
|+|+++.+++.|++|+..+++.+ +++++++|+.+... .++||+|++||||..
T Consensus 79 ~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~D~v~~~~~~~~------------------------- 131 (194)
T 1dus_A 79 MADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVK--DRKYNKIITNPPIRA------------------------- 131 (194)
T ss_dssp EEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCT--TSCEEEEEECCCSTT-------------------------
T ss_pred EEECCHHHHHHHHHHHHHcCCCccceEEEECchhcccc--cCCceEEEECCCccc-------------------------
Confidence 99999999999999999998875 69999999988554 368999999999862
Q ss_pred cHHHHHHHHHHHhcccCCCCC
Q 020573 304 GLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 304 Gl~~~~~il~~a~~~LkpgG~ 324 (324)
+.+.+..+++.+.++|+|||+
T Consensus 132 ~~~~~~~~l~~~~~~L~~gG~ 152 (194)
T 1dus_A 132 GKEVLHRIIEEGKELLKDNGE 152 (194)
T ss_dssp CHHHHHHHHHHHHHHEEEEEE
T ss_pred chhHHHHHHHHHHHHcCCCCE
Confidence 123445788888999999884
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.69 E-value=6.4e-17 Score=155.92 Aligned_cols=133 Identities=19% Similarity=0.285 Sum_probs=101.0
Q ss_pred CeeeeeeCCccccc---chHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHH
Q 020573 160 DLVLSVEEGVFIPR---PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVA 236 (324)
Q Consensus 160 ~l~~~v~~~vliPr---p~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~A 236 (324)
++.+...+++|.+. ..++++++ .+ ....+.+|||+|||+|.+++.+++.. |+.+|+|+|+|+.+++.|
T Consensus 192 ~~~~~~~pg~Fs~~~~d~~~~~ll~----~l----~~~~~~~VLDlGcG~G~~s~~la~~~-p~~~V~gvD~s~~al~~A 262 (375)
T 4dcm_A 192 DWTIHNHANVFSRTGLDIGARFFMQ----HL----PENLEGEIVDLGCGNGVIGLTLLDKN-PQAKVVFVDESPMAVASS 262 (375)
T ss_dssp TEEEEECTTCTTCSSCCHHHHHHHH----TC----CCSCCSEEEEETCTTCHHHHHHHHHC-TTCEEEEEESCHHHHHHH
T ss_pred ceEEEeCCCcccCCcccHHHHHHHH----hC----cccCCCeEEEEeCcchHHHHHHHHHC-CCCEEEEEECcHHHHHHH
Confidence 46778889999974 23444433 33 22234799999999999999999985 789999999999999999
Q ss_pred HHHHHHcCCCC--cEEEEEcccccccccCCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHH
Q 020573 237 AFNAQRYGLQD--IIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNG 314 (324)
Q Consensus 237 r~N~~~~gl~~--rv~~~~gD~~~~l~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~ 314 (324)
++|++.+++.+ +++++.+|+++.+. .++||+|++||||.....+. . .....++++
T Consensus 263 r~n~~~ngl~~~~~v~~~~~D~~~~~~--~~~fD~Ii~nppfh~~~~~~-------~--------------~~~~~~l~~ 319 (375)
T 4dcm_A 263 RLNVETNMPEALDRCEFMINNALSGVE--PFRFNAVLCNPPFHQQHALT-------D--------------NVAWEMFHH 319 (375)
T ss_dssp HHHHHHHCGGGGGGEEEEECSTTTTCC--TTCEEEEEECCCC--------------C--------------CHHHHHHHH
T ss_pred HHHHHHcCCCcCceEEEEechhhccCC--CCCeeEEEECCCcccCcccC-------H--------------HHHHHHHHH
Confidence 99999998764 58889999998654 36899999999997432210 0 122368899
Q ss_pred HhcccCCCCC
Q 020573 315 TASMLKPDKW 324 (324)
Q Consensus 315 a~~~LkpgG~ 324 (324)
+.++|||||+
T Consensus 320 ~~~~LkpgG~ 329 (375)
T 4dcm_A 320 ARRCLKINGE 329 (375)
T ss_dssp HHHHEEEEEE
T ss_pred HHHhCCCCcE
Confidence 9999999984
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=99.69 E-value=6.3e-17 Score=153.75 Aligned_cols=152 Identities=16% Similarity=0.160 Sum_probs=115.2
Q ss_pred hcCCCceeE-EecccccCeeeeeeCCcccccch----HHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhC
Q 020573 144 EKRKPFQYL-VGCEHWRDLVLSVEEGVFIPRPE----TELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLG 218 (324)
Q Consensus 144 ~~~~pl~yi-~g~~~f~~l~~~v~~~vliPrp~----te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~ 218 (324)
..+.|+||| +++..++|..+.++..+.+++++ +|.++...+. ....+.+|||+|||+|.++..+++..
T Consensus 70 ~~~s~~q~I~v~~~~~~g~~l~ldg~~~~~~~de~~y~e~L~~l~l~------~~~~~~~VLdIG~G~G~~a~~la~~~- 142 (334)
T 1xj5_A 70 QGKSDYQDVIVFQSATYGKVLVLDGVIQLTERDECAYQEMITHLPLC------SIPNPKKVLVIGGGDGGVLREVARHA- 142 (334)
T ss_dssp EEECSSCEEEEEEESSSCEEEEETTEEEEETTTHHHHHHHHHHHHHT------TSSCCCEEEEETCSSSHHHHHHTTCT-
T ss_pred EeecCCeEEEEEEcCCCCeEEEECCEeecCcCcchHHHHHHHHHHHh------hCCCCCEEEEECCCccHHHHHHHHcC-
Confidence 456899999 99999999999999999999876 4444443221 11245799999999999999999874
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHHc--CC-CCcEEEEEcccccccccC-CCCeeEEEEcCCCCCCCCcccchhhhhcccc
Q 020573 219 SKGSIIAVDLNPLAAAVAAFNAQRY--GL-QDIIEIRQGSWFGKLKDV-EGKLSGVVSNPPYIPSDDISGLQVEVGKHEP 294 (324)
Q Consensus 219 p~~~V~gvDis~~al~~Ar~N~~~~--gl-~~rv~~~~gD~~~~l~~~-~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP 294 (324)
+..+|+++|+|+.+++.|++|+... ++ ..+++++++|+.+.+... .++||+|++|++-- .. ..
T Consensus 143 ~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlIi~d~~~p-~~-----~~------- 209 (334)
T 1xj5_A 143 SIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAVIVDSSDP-IG-----PA------- 209 (334)
T ss_dssp TCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEEEECCCCT-TS-----GG-------
T ss_pred CCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEEEECCCCc-cC-----cc-------
Confidence 6789999999999999999998763 44 357999999988754332 36899999997521 00 00
Q ss_pred cccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 295 RLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 295 ~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
++ ...+.+++.+.++|||||+
T Consensus 210 --------~~-l~~~~~l~~~~~~LkpgG~ 230 (334)
T 1xj5_A 210 --------KE-LFEKPFFQSVARALRPGGV 230 (334)
T ss_dssp --------GG-GGSHHHHHHHHHHEEEEEE
T ss_pred --------hh-hhHHHHHHHHHHhcCCCcE
Confidence 01 1134788999999999985
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.68 E-value=3.3e-17 Score=138.27 Aligned_cols=111 Identities=23% Similarity=0.235 Sum_probs=90.4
Q ss_pred cccCeeeeeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHH
Q 020573 157 HWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVA 236 (324)
Q Consensus 157 ~f~~l~~~v~~~vliPrp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~A 236 (324)
.|++..+.+.++ ++|.++.+.+.+.+.+... ..++.+|||+|||+|.+++.+++.. .+|+|+|+|+.+++.|
T Consensus 8 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~~~vLD~GcG~G~~~~~l~~~~---~~v~~vD~~~~~~~~a 79 (171)
T 1ws6_A 8 KARGVALKVPAS---ARPSPVRLRKALFDYLRLR--YPRRGRFLDPFAGSGAVGLEAASEG---WEAVLVEKDPEAVRLL 79 (171)
T ss_dssp GGTTCEECCCTT---CCCCCHHHHHHHHHHHHHH--CTTCCEEEEETCSSCHHHHHHHHTT---CEEEEECCCHHHHHHH
T ss_pred ccCCeEecCCCC---CCCCHHHHHHHHHHHHHhh--ccCCCeEEEeCCCcCHHHHHHHHCC---CeEEEEeCCHHHHHHH
Confidence 467899999988 7778888888887776211 1145699999999999999999973 3499999999999999
Q ss_pred HHHHHHcCCCCcEEEEEcccccccccC---CCCeeEEEEcCCCC
Q 020573 237 AFNAQRYGLQDIIEIRQGSWFGKLKDV---EGKLSGVVSNPPYI 277 (324)
Q Consensus 237 r~N~~~~gl~~rv~~~~gD~~~~l~~~---~~~fDlIVsNPPYi 277 (324)
++|++.+++ +++++++|+.+.+... .++||+|++||||.
T Consensus 80 ~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~~~~ 121 (171)
T 1ws6_A 80 KENVRRTGL--GARVVALPVEVFLPEAKAQGERFTVAFMAPPYA 121 (171)
T ss_dssp HHHHHHHTC--CCEEECSCHHHHHHHHHHTTCCEEEEEECCCTT
T ss_pred HHHHHHcCC--ceEEEeccHHHHHHhhhccCCceEEEEECCCCc
Confidence 999999987 5999999998743321 23799999999997
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.68 E-value=9e-17 Score=147.66 Aligned_cols=126 Identities=19% Similarity=0.214 Sum_probs=99.8
Q ss_pred CCceeEEecccccCeeeeeeCC--cccccchHHHHHHHHHHH-----------hhhcCCCCCCCeEEEEcCCccHHHHHH
Q 020573 147 KPFQYLVGCEHWRDLVLSVEEG--VFIPRPETELMVDLVSDV-----------LVRDNDGLRDGFWVDLGTGSGAIAIGI 213 (324)
Q Consensus 147 ~pl~yi~g~~~f~~l~~~v~~~--vliPrp~te~lve~l~~~-----------l~~~~~~~~~~~VLDLGcGsG~iai~l 213 (324)
.+.++++|. +++..+.+..+ +++++|+++.+.+.+... +.......++.+|||+|||+|.+++.+
T Consensus 53 ~~~~~i~g~--~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~VLDiG~G~G~~~~~l 130 (277)
T 1o54_A 53 IDLNEVFEK--GPGEIIRTSAGKKGYILIPSLIDEIMNMKRRTQIVYPKDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVL 130 (277)
T ss_dssp EEHHHHTTS--CTTCEEECTTCCEEEEECCCHHHHHHTCCC-CCCCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHH
T ss_pred EEHHHhcCC--CCCcEEEEcCCcEEEEeCCCHHHHHhhccccCCccCHHHHHHHHHHhCCCCCCEEEEECCcCCHHHHHH
Confidence 456677775 45677888777 889999999887643221 101113345679999999999999999
Q ss_pred HHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcCCC
Q 020573 214 ARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPY 276 (324)
Q Consensus 214 a~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNPPY 276 (324)
++.+++..+|+++|+++.+++.|++|++.+++.++++++.+|+.+.+. .++||+|++|||+
T Consensus 131 a~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--~~~~D~V~~~~~~ 191 (277)
T 1o54_A 131 ARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFD--EKDVDALFLDVPD 191 (277)
T ss_dssp HHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCS--CCSEEEEEECCSC
T ss_pred HHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHccc--CCccCEEEECCcC
Confidence 998657789999999999999999999999986779999999987643 3689999999885
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=99.68 E-value=1.9e-16 Score=150.22 Aligned_cols=144 Identities=16% Similarity=0.096 Sum_probs=108.1
Q ss_pred cCeeeeeeCCccccc---chHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHH
Q 020573 159 RDLVLSVEEGVFIPR---PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAV 235 (324)
Q Consensus 159 ~~l~~~v~~~vliPr---p~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~ 235 (324)
.+..|.+++..+... ++++...+.+.+.+ .. ..++.+|||+|||+|.+++.+++. +++|+++|+|+.+++.
T Consensus 117 ~g~~f~v~~~~~~~tg~f~dq~~~~~~l~~~~-~~--~~~~~~VLDlgcGtG~~sl~la~~---ga~V~~VD~s~~al~~ 190 (332)
T 2igt_A 117 LGVEFLGRFTAFRHVGVFPEQIVHWEWLKNAV-ET--ADRPLKVLNLFGYTGVASLVAAAA---GAEVTHVDASKKAIGW 190 (332)
T ss_dssp TTEEEEEECCSSSCCSCCGGGHHHHHHHHHHH-HH--SSSCCEEEEETCTTCHHHHHHHHT---TCEEEEECSCHHHHHH
T ss_pred CCEEEEEecCccccceechHHHHHHHHHHHHH-Hh--cCCCCcEEEcccccCHHHHHHHHc---CCEEEEEECCHHHHHH
Confidence 467777777655442 46666666666655 21 123569999999999999999985 2499999999999999
Q ss_pred HHHHHHHcCCCC-cEEEEEcccccccccC---CCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHH
Q 020573 236 AAFNAQRYGLQD-IIEIRQGSWFGKLKDV---EGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHL 311 (324)
Q Consensus 236 Ar~N~~~~gl~~-rv~~~~gD~~~~l~~~---~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~i 311 (324)
|++|++.+++.+ +++++++|+++.+... .++||+||+||||....... ++ .+..+.+..+
T Consensus 191 a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii~dPP~~~~~~~~----~~------------~~~~~~~~~l 254 (332)
T 2igt_A 191 AKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIILTDPPKFGRGTHG----EV------------WQLFDHLPLM 254 (332)
T ss_dssp HHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEEECCCSEEECTTC----CE------------EEHHHHHHHH
T ss_pred HHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEEECCccccCCchH----HH------------HHHHHHHHHH
Confidence 999999999976 5999999998755321 35899999999975322100 01 1236678889
Q ss_pred HHHHhcccCCCCC
Q 020573 312 CNGTASMLKPDKW 324 (324)
Q Consensus 312 l~~a~~~LkpgG~ 324 (324)
++.+.++|||||+
T Consensus 255 l~~~~~~LkpgG~ 267 (332)
T 2igt_A 255 LDICREILSPKAL 267 (332)
T ss_dssp HHHHHHTBCTTCC
T ss_pred HHHHHHhcCcCcE
Confidence 9999999999995
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.68 E-value=2.6e-16 Score=149.98 Aligned_cols=128 Identities=20% Similarity=0.179 Sum_probs=100.2
Q ss_pred cchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEE
Q 020573 173 RPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIR 252 (324)
Q Consensus 173 rp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~ 252 (324)
.+..+.+...+.... ...++.+|||+|||+|.+++.++...+++.+|+|+|+|+.+++.|++|++.+|+. ++++.
T Consensus 185 a~l~~~la~~l~~~~----~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~-~i~~~ 259 (354)
T 3tma_A 185 GSLTPVLAQALLRLA----DARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLS-WIRFL 259 (354)
T ss_dssp CSCCHHHHHHHHHHT----TCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCT-TCEEE
T ss_pred CCcCHHHHHHHHHHh----CCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCC-ceEEE
Confidence 345566666666554 2334678999999999999999998546789999999999999999999999998 79999
Q ss_pred EcccccccccCCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 253 QGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 253 ~gD~~~~l~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
++|+.+... ..+.||+|++||||..... . ..+..+.++.+++.+.++|||||.
T Consensus 260 ~~D~~~~~~-~~~~~D~Ii~npPyg~r~~------------~------~~~~~~~~~~~~~~~~~~LkpgG~ 312 (354)
T 3tma_A 260 RADARHLPR-FFPEVDRILANPPHGLRLG------------R------KEGLFHLYWDFLRGALALLPPGGR 312 (354)
T ss_dssp ECCGGGGGG-TCCCCSEEEECCCSCC----------------------CHHHHHHHHHHHHHHHHTSCTTCE
T ss_pred eCChhhCcc-ccCCCCEEEECCCCcCccC------------C------cccHHHHHHHHHHHHHHhcCCCcE
Confidence 999987433 2357899999999963210 0 012246678999999999999994
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.67 E-value=1.9e-16 Score=139.82 Aligned_cols=138 Identities=15% Similarity=0.132 Sum_probs=100.9
Q ss_pred CeeeeeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHH
Q 020573 160 DLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFN 239 (324)
Q Consensus 160 ~l~~~v~~~vliPrp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N 239 (324)
...+...+.+++|+|++ ...++. +.. . ..+.+|||+|||+|.+++.+++.. |+.+|+|+|+|+.+++.|++|
T Consensus 13 ~~~~~~~~~~~~~~p~~-~~~~~~-~~f-~----~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~gvD~s~~~l~~a~~~ 84 (214)
T 1yzh_A 13 TELLEANPQYVVLNPLE-AKAKWR-DLF-G----NDNPIHVEVGSGKGAFVSGMAKQN-PDINYIGIDIQKSVLSYALDK 84 (214)
T ss_dssp HHHHHTCTTTEECCGGG-TTTTHH-HHH-T----SCCCEEEEESCTTSHHHHHHHHHC-TTSEEEEEESCHHHHHHHHHH
T ss_pred HHHHHhCCCEEecChhh-cccCHH-HHc-C----CCCCeEEEEccCcCHHHHHHHHHC-CCCCEEEEEcCHHHHHHHHHH
Confidence 33444566778888875 222222 222 1 135689999999999999999986 788999999999999999999
Q ss_pred HHHcCCCCcEEEEEcccccccc-cCCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcc
Q 020573 240 AQRYGLQDIIEIRQGSWFGKLK-DVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASM 318 (324)
Q Consensus 240 ~~~~gl~~rv~~~~gD~~~~l~-~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~ 318 (324)
++.+++. +++++++|+.+... ...++||+|++|+|-.-. . .+|+++.. .+..+++.+.++
T Consensus 85 ~~~~~~~-~v~~~~~d~~~~~~~~~~~~~D~i~~~~~~~~~--------~-~~~~~~~~---------~~~~~l~~~~~~ 145 (214)
T 1yzh_A 85 VLEVGVP-NIKLLWVDGSDLTDYFEDGEIDRLYLNFSDPWP--------K-KRHEKRRL---------TYKTFLDTFKRI 145 (214)
T ss_dssp HHHHCCS-SEEEEECCSSCGGGTSCTTCCSEEEEESCCCCC--------S-GGGGGGST---------TSHHHHHHHHHH
T ss_pred HHHcCCC-CEEEEeCCHHHHHhhcCCCCCCEEEEECCCCcc--------c-cchhhhcc---------CCHHHHHHHHHH
Confidence 9999984 69999999987321 124689999999873210 0 13444421 245789999999
Q ss_pred cCCCCC
Q 020573 319 LKPDKW 324 (324)
Q Consensus 319 LkpgG~ 324 (324)
|||||+
T Consensus 146 LkpgG~ 151 (214)
T 1yzh_A 146 LPENGE 151 (214)
T ss_dssp SCTTCE
T ss_pred cCCCcE
Confidence 999995
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=2.4e-16 Score=152.35 Aligned_cols=138 Identities=12% Similarity=0.021 Sum_probs=103.7
Q ss_pred cCeeeeeeCC-----ccccc-chHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHH
Q 020573 159 RDLVLSVEEG-----VFIPR-PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLA 232 (324)
Q Consensus 159 ~~l~~~v~~~-----vliPr-p~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~a 232 (324)
.|+.|.+++. .|++. ..++.++ .+.+ ..+.+|||+|||+|.+++.+|+. ...+|+|+|+|+.|
T Consensus 179 ~g~~f~v~~~~~~~t~ff~~~~~~~~~~---~~~~------~~~~~VLDl~cGtG~~sl~la~~--ga~~V~~vD~s~~a 247 (385)
T 2b78_A 179 NGISYNVFLNDGLMTGIFLDQRQVRNEL---INGS------AAGKTVLNLFSYTAAFSVAAAMG--GAMATTSVDLAKRS 247 (385)
T ss_dssp TTEEEEECSSSSSCCSSCGGGHHHHHHH---HHTT------TBTCEEEEETCTTTHHHHHHHHT--TBSEEEEEESCTTH
T ss_pred CCEEEEEeccccccCCcCCcHHHHHHHH---HHHh------cCCCeEEEEeeccCHHHHHHHHC--CCCEEEEEECCHHH
Confidence 5788999886 55543 2222222 2221 13569999999999999999985 23599999999999
Q ss_pred HHHHHHHHHHcCCCC-cEEEEEcccccccccC---CCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHH
Q 020573 233 AAVAAFNAQRYGLQD-IIEIRQGSWFGKLKDV---EGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYL 308 (324)
Q Consensus 233 l~~Ar~N~~~~gl~~-rv~~~~gD~~~~l~~~---~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~ 308 (324)
++.|++|++.+++.+ +++++++|+++.+... .++||+|++||||..... . ...+.+..+
T Consensus 248 l~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~Ii~DPP~~~~~~---------~--------~~~~~~~~~ 310 (385)
T 2b78_A 248 RALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIIIIDPPSFARNK---------K--------EVFSVSKDY 310 (385)
T ss_dssp HHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEEECCCCC----------------------CCCCHHHHH
T ss_pred HHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEEEECCCCCCCCh---------h--------hHHHHHHHH
Confidence 999999999999975 7999999998755421 358999999999963211 0 123457788
Q ss_pred HHHHHHHhcccCCCCC
Q 020573 309 LHLCNGTASMLKPDKW 324 (324)
Q Consensus 309 ~~il~~a~~~LkpgG~ 324 (324)
+.++..+.++|+|||+
T Consensus 311 ~~ll~~~~~~L~pgG~ 326 (385)
T 2b78_A 311 HKLIRQGLEILSENGL 326 (385)
T ss_dssp HHHHHHHHHTEEEEEE
T ss_pred HHHHHHHHHhcCCCcE
Confidence 8999999999999985
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.7e-16 Score=146.77 Aligned_cols=138 Identities=10% Similarity=0.011 Sum_probs=93.2
Q ss_pred hcCCCceeEEecccccCeeeeeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEE
Q 020573 144 EKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSI 223 (324)
Q Consensus 144 ~~~~pl~yi~g~~~f~~l~~~v~~~vliPrp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V 223 (324)
..++|++|++|...|++..+. +.++.+++.+.... ....+.+|||+|||+|.+++.+++. ...+|
T Consensus 41 ~~~~~~~~i~g~~~~~g~~~~---------~~~~~l~~~l~~~~----~~~~~~~vLDlG~G~G~~~~~~a~~--~~~~v 105 (281)
T 3bzb_A 41 LQCSVQVQTTQEHPLWTSHVW---------SGARALADTLCWQP----ELIAGKTVCELGAGAGLVSIVAFLA--GADQV 105 (281)
T ss_dssp -CCEEEEECC--------------------CHHHHHHHHHHHCG----GGTTTCEEEETTCTTSHHHHHHHHT--TCSEE
T ss_pred ccCCeEEEECCCCCCCCceee---------cHHHHHHHHHHhcc----hhcCCCeEEEecccccHHHHHHHHc--CCCEE
Confidence 556799999999999887665 67889999888754 1234679999999999999999885 33599
Q ss_pred EEEeC-CHHHHHHHHHHH-----HHcCCC----CcEEEEEccccccccc-----CCCCeeEEEE-cCCCCCCCCcccchh
Q 020573 224 IAVDL-NPLAAAVAAFNA-----QRYGLQ----DIIEIRQGSWFGKLKD-----VEGKLSGVVS-NPPYIPSDDISGLQV 287 (324)
Q Consensus 224 ~gvDi-s~~al~~Ar~N~-----~~~gl~----~rv~~~~gD~~~~l~~-----~~~~fDlIVs-NPPYi~~~~~~~l~~ 287 (324)
+|+|+ |+.+++.|++|+ +.+++. +++++...||.+.... ..++||+|++ |..|...
T Consensus 106 ~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~dvl~~~~-------- 177 (281)
T 3bzb_A 106 VATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQRCTGLQRFQVVLLADLLSFHQ-------- 177 (281)
T ss_dssp EEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHHHHHHSCSSBSEEEEESCCSCGG--------
T ss_pred EEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHHhhccCCCCCEEEEeCcccChH--------
Confidence 99999 899999999999 556664 4699998887664221 1368999997 6555411
Q ss_pred hhhcccccccccCCCCcHHHHHHHHHHHhcccC---C--CC
Q 020573 288 EVGKHEPRLALDGGVDGLDYLLHLCNGTASMLK---P--DK 323 (324)
Q Consensus 288 ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~Lk---p--gG 323 (324)
.+..+++.+.++|| | ||
T Consensus 178 -------------------~~~~ll~~l~~~Lk~~~p~~gG 199 (281)
T 3bzb_A 178 -------------------AHDALLRSVKMLLALPANDPTA 199 (281)
T ss_dssp -------------------GHHHHHHHHHHHBCCTTTCTTC
T ss_pred -------------------HHHHHHHHHHHHhcccCCCCCC
Confidence 13357788888888 8 88
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=4.2e-16 Score=133.96 Aligned_cols=109 Identities=18% Similarity=0.157 Sum_probs=81.4
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNP 274 (324)
++.+|||+|||+|.+++.+++. ..+|+|+|+|+.+++.|++|++.+++ +++++++++..+......++||+|++|+
T Consensus 22 ~~~~vLDiGcG~G~~~~~la~~---~~~v~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~~~~~l~~~~~~~fD~v~~~~ 97 (185)
T 3mti_A 22 DESIVVDATMGNGNDTAFLAGL---SKKVYAFDVQEQALGKTSQRLSDLGI-ENTELILDGHENLDHYVREPIRAAIFNL 97 (185)
T ss_dssp TTCEEEESCCTTSHHHHHHHTT---SSEEEEEESCHHHHHHHHHHHHHHTC-CCEEEEESCGGGGGGTCCSCEEEEEEEE
T ss_pred CCCEEEEEcCCCCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEeCcHHHHHhhccCCcCEEEEeC
Confidence 4679999999999999999986 48999999999999999999999998 5699999777653222246899999999
Q ss_pred CCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 275 PYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
+|.+..+.. + .+. .+....+++++.++|||||+
T Consensus 98 ~~~~~~~~~-----~-~~~-----------~~~~~~~l~~~~~~LkpgG~ 130 (185)
T 3mti_A 98 GYLPSADKS-----V-ITK-----------PHTTLEAIEKILDRLEVGGR 130 (185)
T ss_dssp C-----------------C-----------HHHHHHHHHHHHHHEEEEEE
T ss_pred CCCCCcchh-----c-ccC-----------hhhHHHHHHHHHHhcCCCcE
Confidence 998653211 1 000 23344678899999999984
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=1.6e-16 Score=150.04 Aligned_cols=152 Identities=15% Similarity=0.173 Sum_probs=112.8
Q ss_pred hcCCCceeEEecc-cccCeeeeeeCCcccccch----HHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhC
Q 020573 144 EKRKPFQYLVGCE-HWRDLVLSVEEGVFIPRPE----TELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLG 218 (324)
Q Consensus 144 ~~~~pl~yi~g~~-~f~~l~~~v~~~vliPrp~----te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~ 218 (324)
...-|+|||.+.. .++|..+.++..+.+|+++ +|.++...+... ..+.+|||+|||+|.++..+++..
T Consensus 66 ~~~s~~q~i~v~~~~~~g~~l~ldg~~~~~~~de~~y~e~l~~~~l~~~------~~~~~VLdiG~G~G~~~~~l~~~~- 138 (321)
T 2pt6_A 66 ETKSKYQNVLVFESTTYGKVLVLDGVIQLTEKDEFAYHEMMTHVPMTVS------KEPKNVLVVGGGDGGIIRELCKYK- 138 (321)
T ss_dssp EEECSSCEEEEEEESSSCEEEEETTEEEEETTTHHHHHHHHHHHHHHHS------SSCCEEEEEECTTCHHHHHHTTCT-
T ss_pred EEECCCceEEEEEcCCCcEEEEECCEeeeCcccchHHHHHHHHHHHhcC------CCCCEEEEEcCCccHHHHHHHHcC-
Confidence 3457999998863 6789999999999999987 454444322211 235799999999999999999864
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHH--cCC-CCcEEEEEcccccccccCCCCeeEEEEcCCCCCCCCcccchhhhhccccc
Q 020573 219 SKGSIIAVDLNPLAAAVAAFNAQR--YGL-QDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPR 295 (324)
Q Consensus 219 p~~~V~gvDis~~al~~Ar~N~~~--~gl-~~rv~~~~gD~~~~l~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~ 295 (324)
+..+|+++|+|+.+++.|++|+.. +++ .++++++++|+.+.+....++||+|++|++-. . .|.
T Consensus 139 ~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi~d~~~p-~-------------~~~ 204 (321)
T 2pt6_A 139 SVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIVDSSDP-I-------------GPA 204 (321)
T ss_dssp TCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEEECCCS-S-------------SGG
T ss_pred CCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEEECCcCC-C-------------Ccc
Confidence 678999999999999999999875 233 35799999999875543346899999997421 0 011
Q ss_pred ccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 296 LALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 296 ~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
..+. -+.+++.+.++|||||+
T Consensus 205 ~~l~--------~~~~l~~~~~~LkpgG~ 225 (321)
T 2pt6_A 205 ETLF--------NQNFYEKIYNALKPNGY 225 (321)
T ss_dssp GGGS--------SHHHHHHHHHHEEEEEE
T ss_pred hhhh--------HHHHHHHHHHhcCCCcE
Confidence 0110 14688889999999985
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=3.1e-16 Score=145.27 Aligned_cols=106 Identities=18% Similarity=0.159 Sum_probs=86.5
Q ss_pred Ceeee--eeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Q 020573 160 DLVLS--VEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAA 237 (324)
Q Consensus 160 ~l~~~--v~~~vliPrp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar 237 (324)
|..|. ++...|.|+..+|.. .+.+.+ .++.+|||+|||+|.+++.+|+. ..++|+|+|+|+.|++.++
T Consensus 96 G~~~~~D~~k~~f~~~~~~er~--ri~~~~------~~g~~VlD~~aG~G~~~i~~a~~--g~~~V~avD~np~a~~~~~ 165 (278)
T 3k6r_A 96 GIKYKLDVAKIMFSPANVKERV--RMAKVA------KPDELVVDMFAGIGHLSLPIAVY--GKAKVIAIEKDPYTFKFLV 165 (278)
T ss_dssp TEEEEEETTTSCCCGGGHHHHH--HHHHHC------CTTCEEEETTCTTTTTTHHHHHH--TCCEEEEECCCHHHHHHHH
T ss_pred CEEEEEeccceEEcCCcHHHHH--HHHHhc------CCCCEEEEecCcCcHHHHHHHHh--cCCeEEEEECCHHHHHHHH
Confidence 44444 445688898777752 333333 24679999999999999999987 4579999999999999999
Q ss_pred HHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcCCCC
Q 020573 238 FNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYI 277 (324)
Q Consensus 238 ~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNPPYi 277 (324)
+|++.|++.++++++++|..+... .+.||.|++|||+.
T Consensus 166 ~N~~~N~v~~~v~~~~~D~~~~~~--~~~~D~Vi~~~p~~ 203 (278)
T 3k6r_A 166 ENIHLNKVEDRMSAYNMDNRDFPG--ENIADRILMGYVVR 203 (278)
T ss_dssp HHHHHTTCTTTEEEECSCTTTCCC--CSCEEEEEECCCSS
T ss_pred HHHHHcCCCCcEEEEeCcHHHhcc--ccCCCEEEECCCCc
Confidence 999999999999999999988654 36899999999975
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.64 E-value=9.1e-16 Score=134.00 Aligned_cols=117 Identities=19% Similarity=0.157 Sum_probs=92.1
Q ss_pred cchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEE
Q 020573 173 RPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIR 252 (324)
Q Consensus 173 rp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~ 252 (324)
+++++.+++.+.+.+ ......++.+|||+|||+|.+++.+++.+ ++.+|+|+|+|+.+++.|++|+..+++.+ ++++
T Consensus 44 ~~~~~~~~~~~~~~l-~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~ 120 (207)
T 1jsx_A 44 RDPNEMLVRHILDSI-VVAPYLQGERFIDVGTGPGLPGIPLSIVR-PEAHFTLLDSLGKRVRFLRQVQHELKLEN-IEPV 120 (207)
T ss_dssp ----CHHHHHHHHHH-HHGGGCCSSEEEEETCTTTTTHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHHTTCSS-EEEE
T ss_pred CCHHHHHHHHHHhhh-hhhhhcCCCeEEEECCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCC-eEEE
Confidence 788888888888776 21111235699999999999999999986 77899999999999999999999999876 9999
Q ss_pred EcccccccccCCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 253 QGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 253 ~gD~~~~l~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
++|+.+... .++||+|++|.- ..+..+++.+.++|+|||+
T Consensus 121 ~~d~~~~~~--~~~~D~i~~~~~------------------------------~~~~~~l~~~~~~L~~gG~ 160 (207)
T 1jsx_A 121 QSRVEEFPS--EPPFDGVISRAF------------------------------ASLNDMVSWCHHLPGEQGR 160 (207)
T ss_dssp ECCTTTSCC--CSCEEEEECSCS------------------------------SSHHHHHHHHTTSEEEEEE
T ss_pred ecchhhCCc--cCCcCEEEEecc------------------------------CCHHHHHHHHHHhcCCCcE
Confidence 999987542 368999999620 1134688999999999984
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.64 E-value=8.1e-16 Score=137.58 Aligned_cols=120 Identities=11% Similarity=0.097 Sum_probs=96.7
Q ss_pred ccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCC-CcEE
Q 020573 172 PRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQ-DIIE 250 (324)
Q Consensus 172 Prp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~-~rv~ 250 (324)
..+++..++..+.... ...++.+|||+|||+|..++.+++.++++++|+++|+|+++++.|++|+++.|+. ++++
T Consensus 37 i~~~~~~~l~~l~~~~----~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~ 112 (221)
T 3dr5_A 37 PDEMTGQLLTTLAATT----NGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVR 112 (221)
T ss_dssp CCHHHHHHHHHHHHHS----CCTTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEE
T ss_pred CCHHHHHHHHHHHHhh----CCCCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEE
Confidence 4577777777776544 2222348999999999999999998766899999999999999999999999998 7899
Q ss_pred EEEcccccccccC-CCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 251 IRQGSWFGKLKDV-EGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 251 ~~~gD~~~~l~~~-~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
++++|..+.++.. .++||+|+++.+.. .+..+++.+.++|||||+
T Consensus 113 ~~~gda~~~l~~~~~~~fD~V~~d~~~~-----------------------------~~~~~l~~~~~~LkpGG~ 158 (221)
T 3dr5_A 113 FLLSRPLDVMSRLANDSYQLVFGQVSPM-----------------------------DLKALVDAAWPLLRRGGA 158 (221)
T ss_dssp EECSCHHHHGGGSCTTCEEEEEECCCTT-----------------------------THHHHHHHHHHHEEEEEE
T ss_pred EEEcCHHHHHHHhcCCCcCeEEEcCcHH-----------------------------HHHHHHHHHHHHcCCCcE
Confidence 9999998866554 57999999975321 123578888899999985
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.7e-15 Score=139.58 Aligned_cols=106 Identities=13% Similarity=0.033 Sum_probs=87.9
Q ss_pred cCeeeeeeCCc--ccccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHH
Q 020573 159 RDLVLSVEEGV--FIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVA 236 (324)
Q Consensus 159 ~~l~~~v~~~v--liPrp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~A 236 (324)
.|+.|.++++. +.++..++.+.. ... ..++.+|||+|||+|.+++.+|+.. +.++|+|+|+|+.+++.|
T Consensus 89 ~g~~f~~~~~~~f~~~~~~~e~~~~--~~~------~~~~~~VLDlgcG~G~~s~~la~~~-~~~~V~~vD~s~~av~~a 159 (272)
T 3a27_A 89 YGCLFKLDVAKIMWSQGNIEERKRM--AFI------SNENEVVVDMFAGIGYFTIPLAKYS-KPKLVYAIEKNPTAYHYL 159 (272)
T ss_dssp TTEEEEEETTTSCCCGGGHHHHHHH--HTS------CCTTCEEEETTCTTTTTHHHHHHHT-CCSEEEEEECCHHHHHHH
T ss_pred CCEEEEEechhEEECCCchHHHHHH--HHh------cCCCCEEEEecCcCCHHHHHHHHhC-CCCEEEEEeCCHHHHHHH
Confidence 57889999987 567776666542 221 2346799999999999999999985 567999999999999999
Q ss_pred HHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcCCC
Q 020573 237 AFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPY 276 (324)
Q Consensus 237 r~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNPPY 276 (324)
++|++.+++.+ +.++++|+.+. +. .++||+|++|||+
T Consensus 160 ~~n~~~n~l~~-~~~~~~d~~~~-~~-~~~~D~Vi~d~p~ 196 (272)
T 3a27_A 160 CENIKLNKLNN-VIPILADNRDV-EL-KDVADRVIMGYVH 196 (272)
T ss_dssp HHHHHHTTCSS-EEEEESCGGGC-CC-TTCEEEEEECCCS
T ss_pred HHHHHHcCCCC-EEEEECChHHc-Cc-cCCceEEEECCcc
Confidence 99999999875 89999999886 43 4689999999997
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=1.1e-15 Score=141.26 Aligned_cols=107 Identities=16% Similarity=0.111 Sum_probs=83.5
Q ss_pred cCeeeeeeC--CcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHH
Q 020573 159 RDLVLSVEE--GVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVA 236 (324)
Q Consensus 159 ~~l~~~v~~--~vliPrp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~A 236 (324)
.|+.|.++. ..|.|+...+ ...+.+.+ .++.+|||+|||+|.+++.+++.. .. +|+|+|+|+.|++.|
T Consensus 95 ~g~~f~~d~~~~~f~~~~~~~--~~~l~~~~------~~~~~VLDlgcG~G~~~~~la~~~-~~-~V~~vD~s~~~~~~a 164 (278)
T 2frn_A 95 NGIKYKLDVAKIMFSPANVKE--RVRMAKVA------KPDELVVDMFAGIGHLSLPIAVYG-KA-KVIAIEKDPYTFKFL 164 (278)
T ss_dssp TTEEEEEETTTSCCCGGGHHH--HHHHHHHC------CTTCEEEETTCTTTTTHHHHHHHT-CC-EEEEECCCHHHHHHH
T ss_pred CCEEEEEEccceeEcCCcHHH--HHHHHHhC------CCCCEEEEecccCCHHHHHHHHhC-CC-EEEEEECCHHHHHHH
Confidence 466777754 4566662222 12222222 136799999999999999999974 33 899999999999999
Q ss_pred HHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcCCCC
Q 020573 237 AFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYI 277 (324)
Q Consensus 237 r~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNPPYi 277 (324)
++|++.+++.++++++++|+.+... .++||+|++|||+.
T Consensus 165 ~~n~~~n~~~~~v~~~~~D~~~~~~--~~~fD~Vi~~~p~~ 203 (278)
T 2frn_A 165 VENIHLNKVEDRMSAYNMDNRDFPG--ENIADRILMGYVVR 203 (278)
T ss_dssp HHHHHHTTCTTTEEEECSCTTTCCC--CSCEEEEEECCCSS
T ss_pred HHHHHHcCCCceEEEEECCHHHhcc--cCCccEEEECCchh
Confidence 9999999998889999999988654 47899999999964
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=4.5e-16 Score=153.72 Aligned_cols=120 Identities=16% Similarity=0.172 Sum_probs=97.0
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNP 274 (324)
++.+|||+|||+|..++.+|+.++..++|+|+|+|+.+++.+++|++++|+. +.++++|..+......++||+|++||
T Consensus 101 ~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~--v~~~~~Da~~l~~~~~~~FD~Il~D~ 178 (464)
T 3m6w_A 101 PGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP--LAVTQAPPRALAEAFGTYFHRVLLDA 178 (464)
T ss_dssp TTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC--CEEECSCHHHHHHHHCSCEEEEEEEC
T ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe--EEEEECCHHHhhhhccccCCEEEECC
Confidence 4679999999999999999998755589999999999999999999999986 99999998764322346899999999
Q ss_pred CCCCCCCcccchhhhhcccccccccCCCCcHHH----HHHHHHHHhcccCCCCC
Q 020573 275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDY----LLHLCNGTASMLKPDKW 324 (324)
Q Consensus 275 PYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~----~~~il~~a~~~LkpgG~ 324 (324)
||.....+ ++.|.....-..+++.. .+.+++.+.++|||||+
T Consensus 179 PcSg~G~~--------rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~ 224 (464)
T 3m6w_A 179 PCSGEGMF--------RKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGV 224 (464)
T ss_dssp CCCCGGGT--------TTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEE
T ss_pred CcCCcccc--------ccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcE
Confidence 99865433 44555544444444433 48899999999999994
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=2.3e-15 Score=134.87 Aligned_cols=118 Identities=25% Similarity=0.276 Sum_probs=91.3
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNP 274 (324)
++.+|||+|||+|.+++.+++. ..+|+|+|+|+.+++.|++|++.+++.++++++++|+.+... .++||+|++||
T Consensus 78 ~~~~vLD~gcG~G~~~~~la~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~D~v~~~~ 152 (241)
T 3gdh_A 78 KCDVVVDAFCGVGGNTIQFALT---GMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLAS--FLKADVVFLSP 152 (241)
T ss_dssp CCSEEEETTCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHGG--GCCCSEEEECC
T ss_pred CCCEEEECccccCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhcc--cCCCCEEEECC
Confidence 4679999999999999999986 389999999999999999999999987679999999987543 36899999999
Q ss_pred CCCCCCCcccchhhhhcccccccccCCCCcHHHHHH----------------HHHHHhcccCCCCC
Q 020573 275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLH----------------LCNGTASMLKPDKW 324 (324)
Q Consensus 275 PYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~----------------il~~a~~~LkpgG~ 324 (324)
||......... ..+ +.-.-..+|..++.. .++++.++|+|||.
T Consensus 153 ~~~~~~~~~~~-----~~~--~~~~L~pgG~~i~~~~~~~~~~~~~~lp~~~~~~~~~~~l~~~g~ 211 (241)
T 3gdh_A 153 PWGGPDYATAE-----TFD--IRTMMSPDGFEIFRLSKKITNNIVYFLPRNADIDQVASLAGPGGQ 211 (241)
T ss_dssp CCSSGGGGGSS-----SBC--TTTSCSSCHHHHHHHHHHHCSCEEEEEETTBCHHHHHHTTCTTCC
T ss_pred CcCCcchhhhH-----HHH--HHhhcCCcceeHHHHHHhhCCceEEECCCCCCHHHHHHHhccCCC
Confidence 99864432211 111 122234567755554 34667889999884
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=2.4e-15 Score=155.76 Aligned_cols=113 Identities=15% Similarity=0.162 Sum_probs=92.7
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCC-CcEEEEEcccccccccCCCCeeEEEEc
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQ-DIIEIRQGSWFGKLKDVEGKLSGVVSN 273 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~-~rv~~~~gD~~~~l~~~~~~fDlIVsN 273 (324)
++.+|||+|||+|.+++.+++. ...+|+++|+|+.+++.|++|++.+|+. ++++++++|+++.+....++||+|++|
T Consensus 539 ~g~~VLDlg~GtG~~sl~aa~~--ga~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~D 616 (703)
T 3v97_A 539 KGKDFLNLFSYTGSATVHAGLG--GARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFID 616 (703)
T ss_dssp TTCEEEEESCTTCHHHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEEC
T ss_pred CCCcEEEeeechhHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEEC
Confidence 3679999999999999999984 3468999999999999999999999997 579999999998665545789999999
Q ss_pred CCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 274 PPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
|||....... .+..++...++.++..+.++|+|||+
T Consensus 617 PP~f~~~~~~---------------~~~~~~~~~~~~ll~~a~~~LkpgG~ 652 (703)
T 3v97_A 617 PPTFSNSKRM---------------EDAFDVQRDHLALMKDLKRLLRAGGT 652 (703)
T ss_dssp CCSBC----------------------CCBHHHHHHHHHHHHHHHEEEEEE
T ss_pred CccccCCccc---------------hhHHHHHHHHHHHHHHHHHhcCCCcE
Confidence 9996533210 01124578899999999999999995
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=99.61 E-value=6.5e-16 Score=152.31 Aligned_cols=121 Identities=15% Similarity=0.209 Sum_probs=97.4
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNP 274 (324)
++.+|||+|||+|..++.+|+.++..++|+|+|+|+.+++.+++|++++|+.+ +.++++|..+......++||+|++||
T Consensus 105 ~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~n-v~v~~~Da~~l~~~~~~~FD~Il~Da 183 (456)
T 3m4x_A 105 PGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSN-AIVTNHAPAELVPHFSGFFDRIVVDA 183 (456)
T ss_dssp TTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSS-EEEECCCHHHHHHHHTTCEEEEEEEC
T ss_pred CCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCc-eEEEeCCHHHhhhhccccCCEEEECC
Confidence 46799999999999999999987556899999999999999999999999975 99999998764322346899999999
Q ss_pred CCCCCCCcccchhhhhcccccccccCCCCcH----HHHHHHHHHHhcccCCCCC
Q 020573 275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGL----DYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 275 PYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl----~~~~~il~~a~~~LkpgG~ 324 (324)
||...+.+ ++.|.....-..+++ ...+.+++.|.++|||||+
T Consensus 184 PCSg~G~~--------rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~ 229 (456)
T 3m4x_A 184 PCSGEGMF--------RKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQ 229 (456)
T ss_dssp CCCCGGGT--------TTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEE
T ss_pred CCCCcccc--------ccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcE
Confidence 99865543 444554444444444 3446899999999999994
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.61 E-value=2.9e-15 Score=140.88 Aligned_cols=123 Identities=15% Similarity=0.158 Sum_probs=92.5
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNP 274 (324)
++.+|||+|||+|..++.+++.+++.++|+|+|+|+.+++.+++|++++|+.+ ++++++|+.+... ..++||+|++||
T Consensus 118 ~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~-v~~~~~D~~~~~~-~~~~fD~Il~d~ 195 (315)
T 1ixk_A 118 PGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLN-VILFHSSSLHIGE-LNVEFDKILLDA 195 (315)
T ss_dssp TTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCS-EEEESSCGGGGGG-GCCCEEEEEEEC
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCe-EEEEECChhhccc-ccccCCEEEEeC
Confidence 46799999999999999999987556899999999999999999999999864 9999999877432 346899999999
Q ss_pred CCCCCCCcccchhhhh-cccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 275 PYIPSDDISGLQVEVG-KHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 275 PYi~~~~~~~l~~ev~-~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
||.....+... +++. ++.+. ...+..+..+.+++.+.++|||||+
T Consensus 196 Pcsg~g~~~~~-p~~~~~~~~~----~~~~~~~~q~~~L~~~~~~LkpGG~ 241 (315)
T 1ixk_A 196 PCTGSGTIHKN-PERKWNRTMD----DIKFCQGLQMRLLEKGLEVLKPGGI 241 (315)
T ss_dssp CTTSTTTCC---------CCHH----HHHHHHHHHHHHHHHHHHHEEEEEE
T ss_pred CCCCcccccCC-hhHhhcCCHH----HHHHHHHHHHHHHHHHHHhCCCCCE
Confidence 99765544221 1111 11110 0112234557899999999999994
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=2.6e-15 Score=134.90 Aligned_cols=100 Identities=17% Similarity=0.242 Sum_probs=84.6
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNP 274 (324)
++.+|+|+|||+|++++.+++. ++..+|+|+|+++.+++.|++|++++|+.+++++.++|+++.++. ..+||+|+..
T Consensus 15 ~g~~VlDIGtGsG~l~i~la~~-~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~-~~~~D~Ivia- 91 (225)
T 3kr9_A 15 QGAILLDVGSDHAYLPIELVER-GQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEE-TDQVSVITIA- 91 (225)
T ss_dssp TTEEEEEETCSTTHHHHHHHHT-TSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCG-GGCCCEEEEE-
T ss_pred CCCEEEEeCCCcHHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhccc-CcCCCEEEEc-
Confidence 4569999999999999999997 477899999999999999999999999998999999999987754 1269988851
Q ss_pred CCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 275 PYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
|. |-+.+..|++.+..+|+++|+
T Consensus 92 --------------------------G~-Gg~~i~~Il~~~~~~L~~~~~ 114 (225)
T 3kr9_A 92 --------------------------GM-GGRLIARILEEGLGKLANVER 114 (225)
T ss_dssp --------------------------EE-CHHHHHHHHHHTGGGCTTCCE
T ss_pred --------------------------CC-ChHHHHHHHHHHHHHhCCCCE
Confidence 11 235677899999999998874
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.59 E-value=6.2e-15 Score=132.14 Aligned_cols=115 Identities=11% Similarity=0.101 Sum_probs=92.5
Q ss_pred cchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEE
Q 020573 173 RPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIR 252 (324)
Q Consensus 173 rp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~ 252 (324)
.+....++..+.... ++.+|||+|||+|..++.+++.. +..+|+++|+++.+++.|++|++..++.++++++
T Consensus 56 ~~~~~~~l~~~~~~~-------~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~ 127 (232)
T 3ntv_A 56 DRLTLDLIKQLIRMN-------NVKNILEIGTAIGYSSMQFASIS-DDIHVTTIERNETMIQYAKQNLATYHFENQVRII 127 (232)
T ss_dssp CHHHHHHHHHHHHHH-------TCCEEEEECCSSSHHHHHHHTTC-TTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEE
T ss_pred CHHHHHHHHHHHhhc-------CCCEEEEEeCchhHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEE
Confidence 455544555444433 35699999999999999999964 6789999999999999999999999998789999
Q ss_pred Ecccccccc-cCCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 253 QGSWFGKLK-DVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 253 ~gD~~~~l~-~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
++|+.+.++ ...++||+|++|.+.. .+..+++.+.++|||||+
T Consensus 128 ~~d~~~~~~~~~~~~fD~V~~~~~~~-----------------------------~~~~~l~~~~~~LkpgG~ 171 (232)
T 3ntv_A 128 EGNALEQFENVNDKVYDMIFIDAAKA-----------------------------QSKKFFEIYTPLLKHQGL 171 (232)
T ss_dssp ESCGGGCHHHHTTSCEEEEEEETTSS-----------------------------SHHHHHHHHGGGEEEEEE
T ss_pred ECCHHHHHHhhccCCccEEEEcCcHH-----------------------------HHHHHHHHHHHhcCCCeE
Confidence 999988665 4457999999974421 133678899999999985
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.59 E-value=3.4e-15 Score=144.73 Aligned_cols=107 Identities=25% Similarity=0.306 Sum_probs=87.4
Q ss_pred CCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcCC
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPP 275 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNPP 275 (324)
+.+|||+|||+|.+++.+|+. ++.|+|+|+|+.|++.|++|++.+++.+ ++.++|+++.+....++||+|++|||
T Consensus 215 g~~VLDlg~GtG~~sl~~a~~---ga~V~avDis~~al~~a~~n~~~ng~~~--~~~~~D~~~~l~~~~~~fD~Ii~dpP 289 (393)
T 4dmg_A 215 GERVLDVYSYVGGFALRAARK---GAYALAVDKDLEALGVLDQAALRLGLRV--DIRHGEALPTLRGLEGPFHHVLLDPP 289 (393)
T ss_dssp TCEEEEESCTTTHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHHTCCC--EEEESCHHHHHHTCCCCEEEEEECCC
T ss_pred CCeEEEcccchhHHHHHHHHc---CCeEEEEECCHHHHHHHHHHHHHhCCCC--cEEEccHHHHHHHhcCCCCEEEECCC
Confidence 679999999999999999985 2459999999999999999999999875 46699998866443456999999999
Q ss_pred CCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 276 YIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 276 Yi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
|...... .+ .++...+..+++.+.++|||||+
T Consensus 290 ~f~~~~~-----~~------------~~~~~~~~~ll~~a~~~LkpGG~ 321 (393)
T 4dmg_A 290 TLVKRPE-----EL------------PAMKRHLVDLVREALRLLAEEGF 321 (393)
T ss_dssp CCCSSGG-----GH------------HHHHHHHHHHHHHHHHTEEEEEE
T ss_pred cCCCCHH-----HH------------HHHHHHHHHHHHHHHHhcCCCCE
Confidence 8643321 11 13467788999999999999995
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.2e-14 Score=146.30 Aligned_cols=152 Identities=17% Similarity=0.171 Sum_probs=105.7
Q ss_pred eCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhC--CCcEEEEEeCCHHHHHHHHHHHHHc
Q 020573 166 EEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLG--SKGSIIAVDLNPLAAAVAAFNAQRY 243 (324)
Q Consensus 166 ~~~vliPrp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~--p~~~V~gvDis~~al~~Ar~N~~~~ 243 (324)
...+|.|++.++++++.+.... ....+.+|+|+|||||.+.+.+++.+. ....++|+|+++.++++|+.|+..+
T Consensus 196 ~G~fyTP~~Vv~lmv~ll~~~~----~~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~ 271 (542)
T 3lkd_A 196 AGEFYTPQPVAKLMTQIAFLGR----EDKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILH 271 (542)
T ss_dssp CSSCCCCHHHHHHHHHHHHTTC----TTCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHT
T ss_pred CCeecccHHHHHHHHHHHhccc----CCCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHc
Confidence 3457889998888888766321 123467999999999999999998752 2578999999999999999999999
Q ss_pred CCC-CcEEEEEcccccc--cccCCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccC
Q 020573 244 GLQ-DIIEIRQGSWFGK--LKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLK 320 (324)
Q Consensus 244 gl~-~rv~~~~gD~~~~--l~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~Lk 320 (324)
|+. +++.+.++|.+.. ......+||+||+||||............-.+|.+.-.+....++ +. .+++.+.++||
T Consensus 272 gi~~~~~~I~~gDtL~~d~p~~~~~~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~-~~--~Fl~~~l~~Lk 348 (542)
T 3lkd_A 272 GVPIENQFLHNADTLDEDWPTQEPTNFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKA-DF--AFLLHGYYHLK 348 (542)
T ss_dssp TCCGGGEEEEESCTTTSCSCCSSCCCBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCC-HH--HHHHHHHHTBC
T ss_pred CCCcCccceEecceecccccccccccccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchh-hH--HHHHHHHHHhC
Confidence 985 4689999999864 112246899999999998543211110011122211101111121 22 58888999999
Q ss_pred -CCCC
Q 020573 321 -PDKW 324 (324)
Q Consensus 321 -pgG~ 324 (324)
+||+
T Consensus 349 ~~gGr 353 (542)
T 3lkd_A 349 QDNGV 353 (542)
T ss_dssp TTTCE
T ss_pred CCcee
Confidence 9994
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.59 E-value=1.1e-14 Score=129.23 Aligned_cols=118 Identities=19% Similarity=0.202 Sum_probs=91.0
Q ss_pred cchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEE
Q 020573 173 RPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIR 252 (324)
Q Consensus 173 rp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~ 252 (324)
.+++..++..+.... ++.+|||+|||+|..++.+++.++++++|+++|+++.+++.|++|++.+++.++++++
T Consensus 43 ~~~~~~~l~~l~~~~-------~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~ 115 (221)
T 3u81_A 43 GDAKGQIMDAVIREY-------SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTIL 115 (221)
T ss_dssp CHHHHHHHHHHHHHH-------CCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEE
T ss_pred CHHHHHHHHHHHHhc-------CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEE
Confidence 345555565555443 3569999999999999999997655789999999999999999999999998889999
Q ss_pred EcccccccccCC-----CCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 253 QGSWFGKLKDVE-----GKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 253 ~gD~~~~l~~~~-----~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
++|+.+.++... ++||+|+++.+.. . ......+++.+ ++|||||+
T Consensus 116 ~~d~~~~l~~~~~~~~~~~fD~V~~d~~~~-------------~-------------~~~~~~~~~~~-~~LkpgG~ 165 (221)
T 3u81_A 116 NGASQDLIPQLKKKYDVDTLDMVFLDHWKD-------------R-------------YLPDTLLLEKC-GLLRKGTV 165 (221)
T ss_dssp ESCHHHHGGGTTTTSCCCCCSEEEECSCGG-------------G-------------HHHHHHHHHHT-TCCCTTCE
T ss_pred ECCHHHHHHHHHHhcCCCceEEEEEcCCcc-------------c-------------chHHHHHHHhc-cccCCCeE
Confidence 999877554433 5899999974311 1 12223466666 99999995
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.59 E-value=3.2e-15 Score=141.97 Aligned_cols=129 Identities=22% Similarity=0.358 Sum_probs=99.0
Q ss_pred eeeeeeCCccccc---chHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Q 020573 161 LVLSVEEGVFIPR---PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAA 237 (324)
Q Consensus 161 l~~~v~~~vliPr---p~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar 237 (324)
+.+...+++|.+. ..++.+++. + ....+.+|||+|||+|.+++.+++.. ++.+|+|+|+|+.+++.|+
T Consensus 167 ~~~~~~~gvf~~~~~d~~~~~ll~~----l----~~~~~~~VLDlGcG~G~~~~~la~~~-~~~~v~~vD~s~~~l~~a~ 237 (343)
T 2pjd_A 167 LTVKTLPGVFSRDGLDVGSQLLLST----L----TPHTKGKVLDVGCGAGVLSVAFARHS-PKIRLTLCDVSAPAVEASR 237 (343)
T ss_dssp EEEEECTTCTTSSSCCHHHHHHHHH----S----CTTCCSBCCBTTCTTSHHHHHHHHHC-TTCBCEEEESBHHHHHHHH
T ss_pred eEEEecCCccCCCCCcHHHHHHHHh----c----CcCCCCeEEEecCccCHHHHHHHHHC-CCCEEEEEECCHHHHHHHH
Confidence 4566778888854 234444443 2 11135689999999999999999984 7789999999999999999
Q ss_pred HHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhc
Q 020573 238 FNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTAS 317 (324)
Q Consensus 238 ~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~ 317 (324)
+|+..+++. ++++.+|+++.. .++||+|++||||..... ...+....+++++.+
T Consensus 238 ~~~~~~~~~--~~~~~~d~~~~~---~~~fD~Iv~~~~~~~g~~---------------------~~~~~~~~~l~~~~~ 291 (343)
T 2pjd_A 238 ATLAANGVE--GEVFASNVFSEV---KGRFDMIISNPPFHDGMQ---------------------TSLDAAQTLIRGAVR 291 (343)
T ss_dssp HHHHHTTCC--CEEEECSTTTTC---CSCEEEEEECCCCCSSSH---------------------HHHHHHHHHHHHHGG
T ss_pred HHHHHhCCC--CEEEEccccccc---cCCeeEEEECCCcccCcc---------------------CCHHHHHHHHHHHHH
Confidence 999998875 677899987743 468999999999963210 013456689999999
Q ss_pred ccCCCCC
Q 020573 318 MLKPDKW 324 (324)
Q Consensus 318 ~LkpgG~ 324 (324)
+|||||+
T Consensus 292 ~LkpgG~ 298 (343)
T 2pjd_A 292 HLNSGGE 298 (343)
T ss_dssp GEEEEEE
T ss_pred hCCCCcE
Confidence 9999994
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=99.58 E-value=7e-16 Score=142.08 Aligned_cols=121 Identities=17% Similarity=0.117 Sum_probs=88.3
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccccc---CCCCeeEEE
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKD---VEGKLSGVV 271 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~---~~~~fDlIV 271 (324)
++.+|||+|||+|..++.+++.++..++|+|+|+++.+++.+++|++++|+. +++++++|..+.... ..++||+|+
T Consensus 83 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~-~v~~~~~D~~~~~~~~~~~~~~fD~Vl 161 (274)
T 3ajd_A 83 EDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVL-NTIIINADMRKYKDYLLKNEIFFDKIL 161 (274)
T ss_dssp TTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCC-cEEEEeCChHhcchhhhhccccCCEEE
Confidence 4679999999999999999998633489999999999999999999999987 599999998764321 136899999
Q ss_pred EcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 272 SNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 272 sNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
+||||...+.+.. .|........+..+....+++.+.++|||||+
T Consensus 162 ~d~Pcs~~g~~~~--------~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~ 206 (274)
T 3ajd_A 162 LDAPCSGNIIKDK--------NRNVSEEDIKYCSLRQKELIDIGIDLLKKDGE 206 (274)
T ss_dssp EEECCC--------------------HHHHTGGGTCHHHHHHHHHHHEEEEEE
T ss_pred EcCCCCCCccccc--------CCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCE
Confidence 9999986543321 12111111111223456899999999999994
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=9e-15 Score=133.19 Aligned_cols=149 Identities=25% Similarity=0.370 Sum_probs=106.8
Q ss_pred hHHHHHHHHHHHHhcCCCce----eEEec---ccccCeeeeeeCCcccc---cchHHHHHHHHHHHhhhcCCCCCCCeEE
Q 020573 131 GLDELYGLWKQRIEKRKPFQ----YLVGC---EHWRDLVLSVEEGVFIP---RPETELMVDLVSDVLVRDNDGLRDGFWV 200 (324)
Q Consensus 131 ~~~~~~~~~~~r~~~~~pl~----yi~g~---~~f~~l~~~v~~~vliP---rp~te~lve~l~~~l~~~~~~~~~~~VL 200 (324)
+.+++.+.|++.+. |+. .+... ....++.+.++++.++. .+.|..+.+.+...+ .++.+||
T Consensus 55 ~~~dw~~~~~~~~~---p~~~~~~~i~~~w~~~~~~~~~~~l~p~~~fgtg~~~tt~~~~~~l~~~~------~~~~~VL 125 (254)
T 2nxc_A 55 GDEDWLEAWRRDLK---PALAPPFVVLAPWHTWEGAEIPLVIEPGMAFGTGHHETTRLALKALARHL------RPGDKVL 125 (254)
T ss_dssp CHHHHHHHHHHHCC---CEEETTEEEECTTCCCCSSSEEEECCCC-----CCSHHHHHHHHHHHHHC------CTTCEEE
T ss_pred ChhHHHHHHHhhCC---CEEEecEEEeCCCCCCCCCceEEEECCCccccCCCCHHHHHHHHHHHHhc------CCCCEEE
Confidence 44778888887753 332 22221 11234567778877664 466666666655433 2457999
Q ss_pred EEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcCCCCCCC
Q 020573 201 DLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSD 280 (324)
Q Consensus 201 DLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNPPYi~~~ 280 (324)
|+|||+|.+++.+++. + .+|+|+|+|+.+++.|++|++.+++. +++.++|+.+.++ .++||+|++|+++
T Consensus 126 DiGcG~G~l~~~la~~-g--~~v~gvDi~~~~v~~a~~n~~~~~~~--v~~~~~d~~~~~~--~~~fD~Vv~n~~~---- 194 (254)
T 2nxc_A 126 DLGTGSGVLAIAAEKL-G--GKALGVDIDPMVLPQAEANAKRNGVR--PRFLEGSLEAALP--FGPFDLLVANLYA---- 194 (254)
T ss_dssp EETCTTSHHHHHHHHT-T--CEEEEEESCGGGHHHHHHHHHHTTCC--CEEEESCHHHHGG--GCCEEEEEEECCH----
T ss_pred EecCCCcHHHHHHHHh-C--CeEEEEECCHHHHHHHHHHHHHcCCc--EEEEECChhhcCc--CCCCCEEEECCcH----
Confidence 9999999999999885 2 39999999999999999999999885 9999999987543 3689999999653
Q ss_pred CcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 281 DISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 281 ~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
+.+..++..+.++|||||+
T Consensus 195 -------------------------~~~~~~l~~~~~~LkpgG~ 213 (254)
T 2nxc_A 195 -------------------------ELHAALAPRYREALVPGGR 213 (254)
T ss_dssp -------------------------HHHHHHHHHHHHHEEEEEE
T ss_pred -------------------------HHHHHHHHHHHHHcCCCCE
Confidence 1234678888899999984
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.58 E-value=4.9e-15 Score=143.42 Aligned_cols=137 Identities=13% Similarity=0.114 Sum_probs=101.3
Q ss_pred cCeeeeeeCC-----cccc-cchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHH
Q 020573 159 RDLVLSVEEG-----VFIP-RPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLA 232 (324)
Q Consensus 159 ~~l~~~v~~~-----vliP-rp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~a 232 (324)
.|+.|.+++. .|+. ..+. ...+.+.. ++.+|||+|||+|.+++.+++. ...+|+|+|+|+.+
T Consensus 188 ~g~~f~v~~~~~~~tgff~~~~~~---~~~l~~~~-------~~~~VLDl~cG~G~~sl~la~~--g~~~V~~vD~s~~a 255 (396)
T 3c0k_A 188 HGMKLLVDIQHGHKTGYYLDQRDS---RLATRRYV-------ENKRVLNCFSYTGGFAVSALMG--GCSQVVSVDTSQEA 255 (396)
T ss_dssp TTEEEEECTTTSSTTSSCGGGHHH---HHHHHHHC-------TTCEEEEESCTTCSHHHHHHHT--TCSEEEEEESCHHH
T ss_pred CCEEEEEeccccccCCcCcCHHHH---HHHHHHhh-------CCCeEEEeeccCCHHHHHHHHC--CCCEEEEEECCHHH
Confidence 4777888875 4443 2222 22222221 4569999999999999999986 24699999999999
Q ss_pred HHHHHHHHHHcCC-CCcEEEEEcccccccccC---CCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHH
Q 020573 233 AAVAAFNAQRYGL-QDIIEIRQGSWFGKLKDV---EGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYL 308 (324)
Q Consensus 233 l~~Ar~N~~~~gl-~~rv~~~~gD~~~~l~~~---~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~ 308 (324)
++.|++|++.+++ .++++++++|+++.+... .++||+|++||||...... .+ .++...+
T Consensus 256 l~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii~dpP~~~~~~~-----~~------------~~~~~~~ 318 (396)
T 3c0k_A 256 LDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVMDPPKFVENKS-----QL------------MGACRGY 318 (396)
T ss_dssp HHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECCSSTTTCSS-----SS------------SCCCTHH
T ss_pred HHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEEEECCCCCCCChh-----HH------------HHHHHHH
Confidence 9999999999998 657999999998764421 3589999999998654321 00 1234456
Q ss_pred HHHHHHHhcccCCCCC
Q 020573 309 LHLCNGTASMLKPDKW 324 (324)
Q Consensus 309 ~~il~~a~~~LkpgG~ 324 (324)
..++..+.+.|+|||+
T Consensus 319 ~~~l~~~~~~LkpgG~ 334 (396)
T 3c0k_A 319 KDINMLAIQLLNEGGI 334 (396)
T ss_dssp HHHHHHHHHTEEEEEE
T ss_pred HHHHHHHHHhcCCCcE
Confidence 7889999999999985
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.58 E-value=1.2e-14 Score=130.86 Aligned_cols=119 Identities=21% Similarity=0.127 Sum_probs=93.9
Q ss_pred ccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEE
Q 020573 172 PRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEI 251 (324)
Q Consensus 172 Prp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~ 251 (324)
.+|.+...++.+.+.+ ...++.+|||+|||+|.++..+++.+ +.+|+|+|+|+.+++.|+++++..++.+++++
T Consensus 17 ~~~~~~~~~~~l~~~~----~~~~~~~VLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~ 90 (256)
T 1nkv_A 17 HNPFTEEKYATLGRVL----RMKPGTRILDLGSGSGEMLCTWARDH--GITGTGIDMSSLFTAQAKRRAEELGVSERVHF 90 (256)
T ss_dssp SSSCCHHHHHHHHHHT----CCCTTCEEEEETCTTCHHHHHHHHHT--CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEE
T ss_pred cCCCCHHHHHHHHHhc----CCCCCCEEEEECCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEE
Confidence 3455566677777665 33456799999999999999999985 46999999999999999999999999878999
Q ss_pred EEcccccccccCCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 252 RQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 252 ~~gD~~~~l~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
+++|+.+... .++||+|+++... .|-+. ...+++++.++|||||+
T Consensus 91 ~~~d~~~~~~--~~~fD~V~~~~~~--------------~~~~~------------~~~~l~~~~r~LkpgG~ 135 (256)
T 1nkv_A 91 IHNDAAGYVA--NEKCDVAACVGAT--------------WIAGG------------FAGAEELLAQSLKPGGI 135 (256)
T ss_dssp EESCCTTCCC--SSCEEEEEEESCG--------------GGTSS------------SHHHHHHHTTSEEEEEE
T ss_pred EECChHhCCc--CCCCCEEEECCCh--------------HhcCC------------HHHHHHHHHHHcCCCeE
Confidence 9999987432 5789999995221 22111 23688999999999994
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=1.3e-14 Score=133.03 Aligned_cols=103 Identities=19% Similarity=0.130 Sum_probs=83.2
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEc
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN 273 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~-p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsN 273 (324)
++.+|||+|||+|.+++.+++.+. ++++|+|+|+|+.|++.|+++++..+...+++++++|+.+. +. +.||+|++|
T Consensus 70 ~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~-~~--~~~d~v~~~ 146 (261)
T 4gek_A 70 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDI-AI--ENASMVVLN 146 (261)
T ss_dssp TTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTC-CC--CSEEEEEEE
T ss_pred CCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccc-cc--cccccceee
Confidence 467999999999999999999763 46799999999999999999999998888899999998763 32 579999996
Q ss_pred CCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 274 PPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
- +..|-|. .....+++++++.|||||+
T Consensus 147 ~--------------~l~~~~~----------~~~~~~l~~i~~~LkpGG~ 173 (261)
T 4gek_A 147 F--------------TLQFLEP----------SERQALLDKIYQGLNPGGA 173 (261)
T ss_dssp S--------------CGGGSCH----------HHHHHHHHHHHHHEEEEEE
T ss_pred e--------------eeeecCc----------hhHhHHHHHHHHHcCCCcE
Confidence 1 1122211 1234688999999999994
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.58 E-value=2.6e-14 Score=124.85 Aligned_cols=99 Identities=18% Similarity=0.200 Sum_probs=84.4
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEc
Q 020573 194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN 273 (324)
Q Consensus 194 ~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsN 273 (324)
.++.+|||+|||+|.+++.+++.. +..+|+|+|+|+++++.|++|++.+++ ++++++++|+.+.+... ++||+|+++
T Consensus 39 ~~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~-~~~D~i~~~ 115 (204)
T 3e05_A 39 QDDLVMWDIGAGSASVSIEASNLM-PNGRIFALERNPQYLGFIRDNLKKFVA-RNVTLVEAFAPEGLDDL-PDPDRVFIG 115 (204)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHHC-TTSEEEEEECCHHHHHHHHHHHHHHTC-TTEEEEECCTTTTCTTS-CCCSEEEES
T ss_pred CCCCEEEEECCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeCChhhhhhcC-CCCCEEEEC
Confidence 356799999999999999999984 789999999999999999999999998 56999999998765542 679999998
Q ss_pred CCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 274 PPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
.++. .+..+++++.++|||||+
T Consensus 116 ~~~~-----------------------------~~~~~l~~~~~~LkpgG~ 137 (204)
T 3e05_A 116 GSGG-----------------------------MLEEIIDAVDRRLKSEGV 137 (204)
T ss_dssp CCTT-----------------------------CHHHHHHHHHHHCCTTCE
T ss_pred CCCc-----------------------------CHHHHHHHHHHhcCCCeE
Confidence 7652 123688899999999994
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.4e-14 Score=122.89 Aligned_cols=99 Identities=18% Similarity=0.123 Sum_probs=83.2
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEc
Q 020573 194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN 273 (324)
Q Consensus 194 ~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsN 273 (324)
.++.+|||+|||+|.+++.+++.+ +..+|+|+|+|+.+++.|++|++.+++.+++ ++++|..+.++...++||+|+++
T Consensus 24 ~~~~~vldiG~G~G~~~~~l~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~~~~~~~D~i~~~ 101 (178)
T 3hm2_A 24 KPHETLWDIGGGSGSIAIEWLRST-PQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFDDVPDNPDVIFIG 101 (178)
T ss_dssp CTTEEEEEESTTTTHHHHHHHTTS-SSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGGGCCSCCSEEEEC
T ss_pred cCCCeEEEeCCCCCHHHHHHHHHC-CCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhhccCCCCCEEEEC
Confidence 346699999999999999999986 7799999999999999999999999988679 89999877666544789999998
Q ss_pred CCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 274 PPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
.++.. ..+++++.++|||||+
T Consensus 102 ~~~~~------------------------------~~~l~~~~~~L~~gG~ 122 (178)
T 3hm2_A 102 GGLTA------------------------------PGVFAAAWKRLPVGGR 122 (178)
T ss_dssp C-TTC------------------------------TTHHHHHHHTCCTTCE
T ss_pred CcccH------------------------------HHHHHHHHHhcCCCCE
Confidence 66531 1478888899999984
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=99.58 E-value=5.9e-15 Score=132.99 Aligned_cols=99 Identities=17% Similarity=0.232 Sum_probs=81.5
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNP 274 (324)
++.+|+|+|||+|++++.+++. ++..+|+|+|+++.+++.|++|++.+|+.+++++.++|.++.+.. ..+||+|+.
T Consensus 21 ~g~~VlDIGtGsG~l~i~la~~-~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~-~~~~D~Ivi-- 96 (230)
T 3lec_A 21 KGARLLDVGSDHAYLPIFLLQM-GYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEE-ADNIDTITI-- 96 (230)
T ss_dssp TTEEEEEETCSTTHHHHHHHHT-TCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCG-GGCCCEEEE--
T ss_pred CCCEEEEECCchHHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhcccc-ccccCEEEE--
Confidence 4569999999999999999997 477899999999999999999999999999999999999987653 237998774
Q ss_pred CCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCC
Q 020573 275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDK 323 (324)
Q Consensus 275 PYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG 323 (324)
. |- |-+.+..|++.+...|+++|
T Consensus 97 --------a-----------------Gm-Gg~lI~~IL~~~~~~l~~~~ 119 (230)
T 3lec_A 97 --------C-----------------GM-GGRLIADILNNDIDKLQHVK 119 (230)
T ss_dssp --------E-----------------EE-CHHHHHHHHHHTGGGGTTCC
T ss_pred --------e-----------------CC-chHHHHHHHHHHHHHhCcCC
Confidence 0 11 12556677777777777776
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.57 E-value=8.7e-15 Score=145.27 Aligned_cols=121 Identities=13% Similarity=0.171 Sum_probs=93.1
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNP 274 (324)
++.+|||+|||+|..++.+|+.+++.++|+|+|+|+.+++.+++|++++|+.+ +.++++|..+......++||.|++||
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~n-v~~~~~D~~~~~~~~~~~fD~Il~D~ 195 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISN-VALTHFDGRVFGAAVPEMFDAILLDA 195 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCS-EEEECCCSTTHHHHSTTCEEEEEEEC
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCc-EEEEeCCHHHhhhhccccCCEEEECC
Confidence 46799999999999999999987556899999999999999999999999864 99999998764321346899999999
Q ss_pred CCCCCCCcccchhhhhcccccccccCCCCc----HHHHHHHHHHHhcccCCCCC
Q 020573 275 PYIPSDDISGLQVEVGKHEPRLALDGGVDG----LDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 275 PYi~~~~~~~l~~ev~~~eP~~aL~gg~dG----l~~~~~il~~a~~~LkpgG~ 324 (324)
||.....+ ++.|.....-..+. .+..+.+++.+.++|||||+
T Consensus 196 PcSg~G~~--------~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~ 241 (479)
T 2frx_A 196 PCSGEGVV--------RKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGT 241 (479)
T ss_dssp CCCCGGGG--------GTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEE
T ss_pred CcCCcccc--------cCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCE
Confidence 99765433 22332221111111 13346899999999999994
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.57 E-value=4.4e-15 Score=131.44 Aligned_cols=115 Identities=19% Similarity=0.245 Sum_probs=92.0
Q ss_pred chHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEE
Q 020573 174 PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQ 253 (324)
Q Consensus 174 p~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~ 253 (324)
+....++..+.... ++.+|||+|||+|..++.+++.++++++|+++|+++.+++.|++|++.+++.+++++++
T Consensus 50 ~~~~~~l~~l~~~~-------~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~ 122 (225)
T 3tr6_A 50 PEQAQLLALLVKLM-------QAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRL 122 (225)
T ss_dssp HHHHHHHHHHHHHH-------TCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEE
T ss_pred HHHHHHHHHHHHhh-------CCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEe
Confidence 45555566555443 35699999999999999999987447899999999999999999999999988899999
Q ss_pred cccccccccCC-----CCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 254 GSWFGKLKDVE-----GKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 254 gD~~~~l~~~~-----~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
+|+.+.++... ++||+|++|++. ..+..+++.+.++|||||+
T Consensus 123 ~d~~~~~~~~~~~~~~~~fD~v~~~~~~-----------------------------~~~~~~l~~~~~~L~pgG~ 169 (225)
T 3tr6_A 123 SPAKDTLAELIHAGQAWQYDLIYIDADK-----------------------------ANTDLYYEESLKLLREGGL 169 (225)
T ss_dssp SCHHHHHHHHHTTTCTTCEEEEEECSCG-----------------------------GGHHHHHHHHHHHEEEEEE
T ss_pred CCHHHHHHHhhhccCCCCccEEEECCCH-----------------------------HHHHHHHHHHHHhcCCCcE
Confidence 99977544322 689999998651 1123578888999999985
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.57 E-value=2.4e-14 Score=125.07 Aligned_cols=122 Identities=25% Similarity=0.353 Sum_probs=91.6
Q ss_pred eeeeeCCcccc---cchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 020573 162 VLSVEEGVFIP---RPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF 238 (324)
Q Consensus 162 ~~~v~~~vliP---rp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~ 238 (324)
.+.+++++... .+.+..+.+.+...+ .++.+|||+|||+|.+++.+++. +..+|+|+|+|+.+++.|++
T Consensus 30 ~~~~~~~~~f~~~~~~~~~~~~~~l~~~~------~~~~~vLDiG~G~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~ 101 (205)
T 3grz_A 30 IIRLDPGLAFGTGNHQTTQLAMLGIERAM------VKPLTVADVGTGSGILAIAAHKL--GAKSVLATDISDESMTAAEE 101 (205)
T ss_dssp EEEESCC-----CCHHHHHHHHHHHHHHC------SSCCEEEEETCTTSHHHHHHHHT--TCSEEEEEESCHHHHHHHHH
T ss_pred eEEecCCcccCCCCCccHHHHHHHHHHhc------cCCCEEEEECCCCCHHHHHHHHC--CCCEEEEEECCHHHHHHHHH
Confidence 34455554332 244555555555433 24579999999999999998874 55799999999999999999
Q ss_pred HHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcc
Q 020573 239 NAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASM 318 (324)
Q Consensus 239 N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~ 318 (324)
|+..+++.+ +++.++|+.+.. .++||+|++|+|+. .+..+++++.++
T Consensus 102 ~~~~~~~~~-v~~~~~d~~~~~---~~~fD~i~~~~~~~-----------------------------~~~~~l~~~~~~ 148 (205)
T 3grz_A 102 NAALNGIYD-IALQKTSLLADV---DGKFDLIVANILAE-----------------------------ILLDLIPQLDSH 148 (205)
T ss_dssp HHHHTTCCC-CEEEESSTTTTC---CSCEEEEEEESCHH-----------------------------HHHHHGGGSGGG
T ss_pred HHHHcCCCc-eEEEeccccccC---CCCceEEEECCcHH-----------------------------HHHHHHHHHHHh
Confidence 999999877 999999998743 36899999997641 234678888888
Q ss_pred cCCCCC
Q 020573 319 LKPDKW 324 (324)
Q Consensus 319 LkpgG~ 324 (324)
|||||+
T Consensus 149 L~~gG~ 154 (205)
T 3grz_A 149 LNEDGQ 154 (205)
T ss_dssp EEEEEE
T ss_pred cCCCCE
Confidence 888884
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=99.56 E-value=9.5e-15 Score=141.30 Aligned_cols=111 Identities=23% Similarity=0.289 Sum_probs=90.4
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccccc---CCCCeeEEE
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKD---VEGKLSGVV 271 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~---~~~~fDlIV 271 (324)
++.+|||+|||+|.+++.+++. +..+|+|+|+|+.+++.|++|++.+++.++++++++|+++.+.. ..++||+|+
T Consensus 217 ~~~~VLDl~~G~G~~~~~la~~--g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi 294 (396)
T 2as0_A 217 PGDRVLDVFTYTGGFAIHAAIA--GADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVV 294 (396)
T ss_dssp TTCEEEETTCTTTHHHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEecCCCCHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEE
Confidence 4679999999999999999986 34699999999999999999999999976799999999875432 136899999
Q ss_pred EcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 272 SNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 272 sNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
+||||..... ..+ .++...+..++..+.++|+|||+
T Consensus 295 ~dpP~~~~~~-----~~~------------~~~~~~~~~~l~~~~~~LkpgG~ 330 (396)
T 2as0_A 295 LDPPAFVQHE-----KDL------------KAGLRAYFNVNFAGLNLVKDGGI 330 (396)
T ss_dssp ECCCCSCSSG-----GGH------------HHHHHHHHHHHHHHHTTEEEEEE
T ss_pred ECCCCCCCCH-----HHH------------HHHHHHHHHHHHHHHHhcCCCcE
Confidence 9999865332 111 11246677899999999999984
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.56 E-value=9.5e-15 Score=132.70 Aligned_cols=99 Identities=15% Similarity=0.200 Sum_probs=81.3
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNP 274 (324)
++.+|+|+|||+|++++.+++. ++..+|+|+|+++.+++.|++|++.+|+.++|++.++|.++.+.. ..+||+||+-
T Consensus 21 ~g~~VlDIGtGsG~l~i~la~~-~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~-~~~~D~Ivia- 97 (244)
T 3gnl_A 21 KNERIADIGSDHAYLPCFAVKN-QTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEK-KDAIDTIVIA- 97 (244)
T ss_dssp SSEEEEEETCSTTHHHHHHHHT-TSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCG-GGCCCEEEEE-
T ss_pred CCCEEEEECCccHHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCc-cccccEEEEe-
Confidence 4569999999999999999997 467799999999999999999999999999999999999987653 1259998851
Q ss_pred CCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCC
Q 020573 275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDK 323 (324)
Q Consensus 275 PYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG 323 (324)
|- |-+.+..|++.+..+|+++|
T Consensus 98 --------------------------gm-Gg~lI~~IL~~~~~~L~~~~ 119 (244)
T 3gnl_A 98 --------------------------GM-GGTLIRTILEEGAAKLAGVT 119 (244)
T ss_dssp --------------------------EE-CHHHHHHHHHHTGGGGTTCC
T ss_pred --------------------------CC-chHHHHHHHHHHHHHhCCCC
Confidence 11 12556677777777777765
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.7e-14 Score=130.77 Aligned_cols=115 Identities=17% Similarity=0.229 Sum_probs=90.9
Q ss_pred chHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEE
Q 020573 174 PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQ 253 (324)
Q Consensus 174 p~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~ 253 (324)
+....++..+.... ++.+|||+|||+|..++.+++.++++++|+++|+|+.+++.|++|+++.++.+++++++
T Consensus 49 ~~~~~~l~~l~~~~-------~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~ 121 (248)
T 3tfw_A 49 ANQGQFLALLVRLT-------QAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLRE 121 (248)
T ss_dssp HHHHHHHHHHHHHH-------TCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEE
T ss_pred HHHHHHHHHHHhhc-------CCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEE
Confidence 34444555554433 35699999999999999999987447899999999999999999999999988899999
Q ss_pred cccccccccCC--CCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 254 GSWFGKLKDVE--GKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 254 gD~~~~l~~~~--~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
+|+.+.++... ++||+|+++.+. ..+..+++.+.++|||||+
T Consensus 122 ~d~~~~l~~~~~~~~fD~V~~d~~~-----------------------------~~~~~~l~~~~~~LkpGG~ 165 (248)
T 3tfw_A 122 GPALQSLESLGECPAFDLIFIDADK-----------------------------PNNPHYLRWALRYSRPGTL 165 (248)
T ss_dssp SCHHHHHHTCCSCCCCSEEEECSCG-----------------------------GGHHHHHHHHHHTCCTTCE
T ss_pred cCHHHHHHhcCCCCCeEEEEECCch-----------------------------HHHHHHHHHHHHhcCCCeE
Confidence 99977554332 489999997431 0123578888999999995
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=99.56 E-value=9.7e-15 Score=128.31 Aligned_cols=116 Identities=15% Similarity=0.141 Sum_probs=92.9
Q ss_pred ccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEE
Q 020573 172 PRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEI 251 (324)
Q Consensus 172 Prp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~ 251 (324)
..+.+..++..+.... .+.+|||+|||+|..++.+++.++++.+|+++|+|+.+++.|++|++..++.+++++
T Consensus 40 ~~~~~~~~l~~l~~~~-------~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~ 112 (210)
T 3c3p_A 40 VDRQTGRLLYLLARIK-------QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVEL 112 (210)
T ss_dssp CCHHHHHHHHHHHHHH-------CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEE
T ss_pred cCHHHHHHHHHHHHhh-------CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEE
Confidence 4566666666665543 356999999999999999999874378999999999999999999999998888999
Q ss_pred EEcccccccccCCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 252 RQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 252 ~~gD~~~~l~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
+++|+.+.++...+ ||+|++|.+.. .+..+++.+.++|||||+
T Consensus 113 ~~~d~~~~~~~~~~-fD~v~~~~~~~-----------------------------~~~~~l~~~~~~LkpgG~ 155 (210)
T 3c3p_A 113 QVGDPLGIAAGQRD-IDILFMDCDVF-----------------------------NGADVLERMNRCLAKNAL 155 (210)
T ss_dssp EESCHHHHHTTCCS-EEEEEEETTTS-----------------------------CHHHHHHHHGGGEEEEEE
T ss_pred EEecHHHHhccCCC-CCEEEEcCChh-----------------------------hhHHHHHHHHHhcCCCeE
Confidence 99999875554446 99999973310 123678888999999984
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.56 E-value=1e-14 Score=140.00 Aligned_cols=108 Identities=18% Similarity=0.283 Sum_probs=89.7
Q ss_pred eeeeeeCCccccc--chHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 020573 161 LVLSVEEGVFIPR--PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF 238 (324)
Q Consensus 161 l~~~v~~~vliPr--p~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~ 238 (324)
+.|.++++.|++. ..++.+++.+.+++ . . .+.+|||+|||+|.+++.+|+.. .+|+|+|+|+.|++.|++
T Consensus 182 ~~~~~~~~~F~Q~n~~~~~~l~~~~~~~~-~---~-~~~~vLDl~cG~G~~~l~la~~~---~~V~gvd~~~~ai~~a~~ 253 (369)
T 3bt7_A 182 MIYRQVENSFTQPNAAMNIQMLEWALDVT-K---G-SKGDLLELYCGNGNFSLALARNF---DRVLATEIAKPSVAAAQY 253 (369)
T ss_dssp CEEEEETTSCCCSBHHHHHHHHHHHHHHT-T---T-CCSEEEEESCTTSHHHHHHGGGS---SEEEEECCCHHHHHHHHH
T ss_pred EEEEECCCCeecCCHHHHHHHHHHHHHHh-h---c-CCCEEEEccCCCCHHHHHHHhcC---CEEEEEECCHHHHHHHHH
Confidence 6788899999974 55688888888876 2 1 24689999999999999999853 699999999999999999
Q ss_pred HHHHcCCCCcEEEEEcccccccccCC---------------CCeeEEEEcCCCC
Q 020573 239 NAQRYGLQDIIEIRQGSWFGKLKDVE---------------GKLSGVVSNPPYI 277 (324)
Q Consensus 239 N~~~~gl~~rv~~~~gD~~~~l~~~~---------------~~fDlIVsNPPYi 277 (324)
|++.+|+. +++++++|+.+.+.... .+||+||.||||.
T Consensus 254 n~~~ng~~-~v~~~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~fD~Vv~dPPr~ 306 (369)
T 3bt7_A 254 NIAANHID-NVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRS 306 (369)
T ss_dssp HHHHTTCC-SEEEECCCSHHHHHHHSSCCCCTTGGGSCGGGCCEEEEEECCCTT
T ss_pred HHHHcCCC-ceEEEECCHHHHHHHHhhccccccccccccccCCCCEEEECcCcc
Confidence 99999985 59999999977543211 2799999999996
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=2.9e-15 Score=145.03 Aligned_cols=135 Identities=16% Similarity=0.181 Sum_probs=95.3
Q ss_pred CcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCC
Q 020573 168 GVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQD 247 (324)
Q Consensus 168 ~vliPrp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~ 247 (324)
.++.|+...+.+++ .+ . ...+.+|||+|||+|.+++.+++.+++..+|+|+|+++.+++.| .
T Consensus 20 ~~~TP~~l~~~~~~----~~-~---~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a----------~ 81 (421)
T 2ih2_A 20 RVETPPEVVDFMVS----LA-E---APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP----------P 81 (421)
T ss_dssp -CCCCHHHHHHHHH----HC-C---CCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC----------T
T ss_pred eEeCCHHHHHHHHH----hh-c---cCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC----------C
Confidence 35667665555544 33 1 12356999999999999999999864568999999999999877 3
Q ss_pred cEEEEEcccccccccCCCCeeEEEEcCCCCCCCCccc----chhhhh-cccccccccCCCCcHHHHHHHHHHHhcccCCC
Q 020573 248 IIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISG----LQVEVG-KHEPRLALDGGVDGLDYLLHLCNGTASMLKPD 322 (324)
Q Consensus 248 rv~~~~gD~~~~l~~~~~~fDlIVsNPPYi~~~~~~~----l~~ev~-~~eP~~aL~gg~dGl~~~~~il~~a~~~Lkpg 322 (324)
+++++++|+++... .++||+||+||||........ +..+.+ .+++..+...| ..+.+..+++.+.++|+||
T Consensus 82 ~~~~~~~D~~~~~~--~~~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~fl~~~~~~Lk~~ 157 (421)
T 2ih2_A 82 WAEGILADFLLWEP--GEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKG--KYNLYGAFLEKAVRLLKPG 157 (421)
T ss_dssp TEEEEESCGGGCCC--SSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCT--TCCHHHHHHHHHHHHEEEE
T ss_pred CCcEEeCChhhcCc--cCCCCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccC--CccHHHHHHHHHHHHhCCC
Confidence 59999999987543 368999999999997655211 222221 12222222222 2467778999999999999
Q ss_pred CC
Q 020573 323 KW 324 (324)
Q Consensus 323 G~ 324 (324)
|+
T Consensus 158 G~ 159 (421)
T 2ih2_A 158 GV 159 (421)
T ss_dssp EE
T ss_pred CE
Confidence 84
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=5.9e-15 Score=131.64 Aligned_cols=107 Identities=14% Similarity=0.187 Sum_probs=85.2
Q ss_pred CCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc--cCCCCeeEEEEc
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK--DVEGKLSGVVSN 273 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~--~~~~~fDlIVsN 273 (324)
+.+|||+|||+|.+++.+|+.. ++.+|+|+|+|+.+++.|++|++.+++.+ ++++++|+.+.+. ...++||.|++|
T Consensus 35 ~~~vLDiGcG~G~~~~~lA~~~-p~~~v~giD~s~~~l~~a~~~~~~~~l~n-v~~~~~Da~~~l~~~~~~~~~d~v~~~ 112 (218)
T 3dxy_A 35 APVTLEIGFGMGASLVAMAKDR-PEQDFLGIEVHSPGVGACLASAHEEGLSN-LRVMCHDAVEVLHKMIPDNSLRMVQLF 112 (218)
T ss_dssp CCEEEEESCTTCHHHHHHHHHC-TTSEEEEECSCHHHHHHHHHHHHHTTCSS-EEEECSCHHHHHHHHSCTTCEEEEEEE
T ss_pred CCeEEEEeeeChHHHHHHHHHC-CCCeEEEEEecHHHHHHHHHHHHHhCCCc-EEEEECCHHHHHHHHcCCCChheEEEe
Confidence 5689999999999999999985 88999999999999999999999999876 9999999877533 124799999999
Q ss_pred --CCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 274 --PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 274 --PPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
+||..... +.-++ ....+++.+.++|||||+
T Consensus 113 ~~~p~~~~~~----------~~rr~----------~~~~~l~~~~r~LkpGG~ 145 (218)
T 3dxy_A 113 FPDPWHKARH----------NKRRI----------VQVPFAELVKSKLQLGGV 145 (218)
T ss_dssp SCCCCCSGGG----------GGGSS----------CSHHHHHHHHHHEEEEEE
T ss_pred CCCCccchhh----------hhhhh----------hhHHHHHHHHHHcCCCcE
Confidence 77753221 10000 012578899999999994
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=1.2e-14 Score=137.84 Aligned_cols=103 Identities=23% Similarity=0.194 Sum_probs=83.6
Q ss_pred cCeeeeeeCC--cccccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHH
Q 020573 159 RDLVLSVEEG--VFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVA 236 (324)
Q Consensus 159 ~~l~~~v~~~--vliPrp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~A 236 (324)
.|..|.+++. .+.++..++.+ .+...+ ..+.+|||+|||+|.+++. ++ ...+|+|+|+|+.+++.|
T Consensus 165 ~g~~f~~d~~~~~~~~~~~~er~--~i~~~~------~~~~~VLDlg~G~G~~~l~-a~---~~~~V~~vD~s~~ai~~a 232 (336)
T 2yx1_A 165 NGYRLWVDIAKVYFSPRLGGERA--RIMKKV------SLNDVVVDMFAGVGPFSIA-CK---NAKKIYAIDINPHAIELL 232 (336)
T ss_dssp TTEEEEEETTTSCCCGGGHHHHH--HHHHHC------CTTCEEEETTCTTSHHHHH-TT---TSSEEEEEESCHHHHHHH
T ss_pred CCEEEEEehHHhccCCccHHHHH--HHHHhc------CCCCEEEEccCccCHHHHh-cc---CCCEEEEEECCHHHHHHH
Confidence 4677777775 45556666665 333333 2467999999999999999 77 257999999999999999
Q ss_pred HHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcCCCC
Q 020573 237 AFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYI 277 (324)
Q Consensus 237 r~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNPPYi 277 (324)
++|++.+++.++++++++|+++.+ ++||+|++|||+.
T Consensus 233 ~~n~~~n~l~~~v~~~~~D~~~~~----~~fD~Vi~dpP~~ 269 (336)
T 2yx1_A 233 KKNIKLNKLEHKIIPILSDVREVD----VKGNRVIMNLPKF 269 (336)
T ss_dssp HHHHHHTTCTTTEEEEESCGGGCC----CCEEEEEECCTTT
T ss_pred HHHHHHcCCCCcEEEEECChHHhc----CCCcEEEECCcHh
Confidence 999999999778999999998865 6899999999985
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.56 E-value=1e-14 Score=129.18 Aligned_cols=132 Identities=16% Similarity=0.166 Sum_probs=94.3
Q ss_pred eeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHc
Q 020573 164 SVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRY 243 (324)
Q Consensus 164 ~v~~~vliPrp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~ 243 (324)
.-.+.+++++|++ ...++.. .. . ..+.+|||+|||+|.+++.+|+.. |+.+|+|+|+|+.+++.|++|++.+
T Consensus 14 ~~~~~~~~~~~~~-~~~~~~~-~f-~----~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~giD~s~~~l~~a~~~~~~~ 85 (213)
T 2fca_A 14 AENADIAISNPAD-YKGKWNT-VF-G----NDNPIHIEVGTGKGQFISGMAKQN-PDINYIGIELFKSVIVTAVQKVKDS 85 (213)
T ss_dssp HHTTTTBCSCGGG-GTTCHHH-HH-T----SCCCEEEEECCTTSHHHHHHHHHC-TTSEEEEECSCHHHHHHHHHHHHHS
T ss_pred HhCccEEecCccc-cCCCHHH-Hc-C----CCCceEEEEecCCCHHHHHHHHHC-CCCCEEEEEechHHHHHHHHHHHHc
Confidence 3345566777654 2223322 22 1 135689999999999999999986 7899999999999999999999999
Q ss_pred CCCCcEEEEEcccccccc-cCCCCeeEEEEcCC--CCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccC
Q 020573 244 GLQDIIEIRQGSWFGKLK-DVEGKLSGVVSNPP--YIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLK 320 (324)
Q Consensus 244 gl~~rv~~~~gD~~~~l~-~~~~~fDlIVsNPP--Yi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~Lk 320 (324)
++.+ ++++++|+.+... ...+.||.|++|.| |... .|+.+. + ....+++.+.++||
T Consensus 86 ~~~n-v~~~~~d~~~l~~~~~~~~~d~v~~~~~~p~~~~-----------~~~~~r-l--------~~~~~l~~~~~~Lk 144 (213)
T 2fca_A 86 EAQN-VKLLNIDADTLTDVFEPGEVKRVYLNFSDPWPKK-----------RHEKRR-L--------TYSHFLKKYEEVMG 144 (213)
T ss_dssp CCSS-EEEECCCGGGHHHHCCTTSCCEEEEESCCCCCSG-----------GGGGGS-T--------TSHHHHHHHHHHHT
T ss_pred CCCC-EEEEeCCHHHHHhhcCcCCcCEEEEECCCCCcCc-----------cccccc-c--------CcHHHHHHHHHHcC
Confidence 9864 9999999876311 12468999999854 3211 122211 0 13468899999999
Q ss_pred CCCC
Q 020573 321 PDKW 324 (324)
Q Consensus 321 pgG~ 324 (324)
|||+
T Consensus 145 pgG~ 148 (213)
T 2fca_A 145 KGGS 148 (213)
T ss_dssp TSCE
T ss_pred CCCE
Confidence 9994
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=1.4e-14 Score=128.21 Aligned_cols=115 Identities=19% Similarity=0.250 Sum_probs=91.0
Q ss_pred chHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEE
Q 020573 174 PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQ 253 (324)
Q Consensus 174 p~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~ 253 (324)
+.+..++..+.... ++.+|||+|||+|..++.+++.++++++|+++|+++.+++.|++|++..++.+++++++
T Consensus 44 ~~~~~~l~~l~~~~-------~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~ 116 (223)
T 3duw_A 44 PTQGKFLQLLVQIQ-------GARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRT 116 (223)
T ss_dssp HHHHHHHHHHHHHH-------TCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEE
T ss_pred HHHHHHHHHHHHhh-------CCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEE
Confidence 44455555554433 35699999999999999999987447899999999999999999999999988899999
Q ss_pred cccccccccC----CCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 254 GSWFGKLKDV----EGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 254 gD~~~~l~~~----~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
+|+.+.+... .++||+|+++++.. .+..+++.+.++|||||+
T Consensus 117 ~d~~~~~~~~~~~~~~~fD~v~~d~~~~-----------------------------~~~~~l~~~~~~L~pgG~ 162 (223)
T 3duw_A 117 GLALDSLQQIENEKYEPFDFIFIDADKQ-----------------------------NNPAYFEWALKLSRPGTV 162 (223)
T ss_dssp SCHHHHHHHHHHTTCCCCSEEEECSCGG-----------------------------GHHHHHHHHHHTCCTTCE
T ss_pred cCHHHHHHHHHhcCCCCcCEEEEcCCcH-----------------------------HHHHHHHHHHHhcCCCcE
Confidence 9997654321 15799999975510 123678888999999995
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=1.7e-14 Score=131.02 Aligned_cols=116 Identities=15% Similarity=0.247 Sum_probs=93.4
Q ss_pred cchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEE
Q 020573 173 RPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIR 252 (324)
Q Consensus 173 rp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~ 252 (324)
.+++..++..+.... .+.+|||+|||+|..++.+++.++++++|+++|+++++++.|++|++..|+.++++++
T Consensus 64 ~~~~~~ll~~l~~~~-------~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~ 136 (247)
T 1sui_A 64 SADEGQFLSMLLKLI-------NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFR 136 (247)
T ss_dssp CHHHHHHHHHHHHHT-------TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEE
T ss_pred CHHHHHHHHHHHHhh-------CcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEE
Confidence 456666666655543 3569999999999999999998744789999999999999999999999998889999
Q ss_pred EcccccccccC------CCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 253 QGSWFGKLKDV------EGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 253 ~gD~~~~l~~~------~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
.+|+.+.++.+ .++||+|+++.+. ..+..+++.+.++|||||+
T Consensus 137 ~gda~~~l~~l~~~~~~~~~fD~V~~d~~~-----------------------------~~~~~~l~~~~~~LkpGG~ 185 (247)
T 1sui_A 137 EGPALPVLDEMIKDEKNHGSYDFIFVDADK-----------------------------DNYLNYHKRLIDLVKVGGV 185 (247)
T ss_dssp ESCHHHHHHHHHHSGGGTTCBSEEEECSCS-----------------------------TTHHHHHHHHHHHBCTTCC
T ss_pred ECCHHHHHHHHHhccCCCCCEEEEEEcCch-----------------------------HHHHHHHHHHHHhCCCCeE
Confidence 99997754422 3689999997431 0134678888999999995
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=99.55 E-value=2.5e-14 Score=137.42 Aligned_cols=99 Identities=18% Similarity=0.185 Sum_probs=85.2
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccccc-CCCCeeEEEEc
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKD-VEGKLSGVVSN 273 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~-~~~~fDlIVsN 273 (324)
++.+|||+| |+|.+++.+++. ++..+|+|+|+|+.+++.|++|++.+|+. +++++++|+.+.++. ..++||+|++|
T Consensus 172 ~~~~VLDlG-G~G~~~~~la~~-~~~~~v~~vDi~~~~l~~a~~~~~~~g~~-~v~~~~~D~~~~l~~~~~~~fD~Vi~~ 248 (373)
T 2qm3_A 172 ENKDIFVLG-DDDLTSIALMLS-GLPKRIAVLDIDERLTKFIEKAANEIGYE-DIEIFTFDLRKPLPDYALHKFDTFITD 248 (373)
T ss_dssp TTCEEEEES-CTTCHHHHHHHH-TCCSEEEEECSCHHHHHHHHHHHHHHTCC-CEEEECCCTTSCCCTTTSSCBSEEEEC
T ss_pred CCCEEEEEC-CCCHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHHcCCC-CEEEEEChhhhhchhhccCCccEEEEC
Confidence 467999999 999999999987 46689999999999999999999999987 699999999885542 34689999999
Q ss_pred CCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCC
Q 020573 274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDK 323 (324)
Q Consensus 274 PPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG 323 (324)
|||... | .+.+++.+.+.|||||
T Consensus 249 ~p~~~~------------------------~---~~~~l~~~~~~LkpgG 271 (373)
T 2qm3_A 249 PPETLE------------------------A---IRAFVGRGIATLKGPR 271 (373)
T ss_dssp CCSSHH------------------------H---HHHHHHHHHHTBCSTT
T ss_pred CCCchH------------------------H---HHHHHHHHHHHcccCC
Confidence 999621 1 2578899999999999
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.6e-14 Score=129.00 Aligned_cols=117 Identities=15% Similarity=0.120 Sum_probs=92.7
Q ss_pred cccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEE
Q 020573 171 IPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIE 250 (324)
Q Consensus 171 iPrp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~ 250 (324)
+..+....++..++... ++.+|||+|||+|.+++.+++.+ ++.+|+++|+++.+++.|++|++.+++.++++
T Consensus 37 ~~~~~~~~~l~~~~~~~-------~~~~vLdiG~G~G~~~~~la~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~ 108 (233)
T 2gpy_A 37 IMDLLGMESLLHLLKMA-------APARILEIGTAIGYSAIRMAQAL-PEATIVSIERDERRYEEAHKHVKALGLESRIE 108 (233)
T ss_dssp CCCHHHHHHHHHHHHHH-------CCSEEEEECCTTSHHHHHHHHHC-TTCEEEEECCCHHHHHHHHHHHHHTTCTTTEE
T ss_pred CcCHHHHHHHHHHHhcc-------CCCEEEEecCCCcHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEE
Confidence 44555555555444433 35699999999999999999986 67899999999999999999999999987899
Q ss_pred EEEcccccccccC--CCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 251 IRQGSWFGKLKDV--EGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 251 ~~~gD~~~~l~~~--~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
++++|+.+.++.. .++||+|++|++.. .+..+++.+.+.|||||+
T Consensus 109 ~~~~d~~~~~~~~~~~~~fD~I~~~~~~~-----------------------------~~~~~l~~~~~~L~pgG~ 155 (233)
T 2gpy_A 109 LLFGDALQLGEKLELYPLFDVLFIDAAKG-----------------------------QYRRFFDMYSPMVRPGGL 155 (233)
T ss_dssp EECSCGGGSHHHHTTSCCEEEEEEEGGGS-----------------------------CHHHHHHHHGGGEEEEEE
T ss_pred EEECCHHHHHHhcccCCCccEEEECCCHH-----------------------------HHHHHHHHHHHHcCCCeE
Confidence 9999998754433 46899999986531 123678888999999984
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.55 E-value=1e-14 Score=140.50 Aligned_cols=130 Identities=19% Similarity=0.231 Sum_probs=95.7
Q ss_pred cccccchHHHHHHHHHHHhhhc---------CCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHH
Q 020573 169 VFIPRPETELMVDLVSDVLVRD---------NDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFN 239 (324)
Q Consensus 169 vliPrp~te~lve~l~~~l~~~---------~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N 239 (324)
..+|+++++.+.+.....+... ....++.+|||+|||+|.++..+++.++++.+|+|+|+|+.+++.|++|
T Consensus 48 ~~~p~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~ 127 (383)
T 4fsd_A 48 AAVPESHRKILADIADEVLEKFYGCGSTLPADGSLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKY 127 (383)
T ss_dssp --CCHHHHHHHHTSCHHHHHHCCSCCCCCSCGGGGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHhhHHHHHHhcCCCCccccccCCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHH
Confidence 3788888888877433322100 0023567999999999999999999876778999999999999999999
Q ss_pred HHHc-----C-CC-CcEEEEEccccccc-----ccCCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHH
Q 020573 240 AQRY-----G-LQ-DIIEIRQGSWFGKL-----KDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDY 307 (324)
Q Consensus 240 ~~~~-----g-l~-~rv~~~~gD~~~~l-----~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~ 307 (324)
++.+ | +. .+++++++|+.+.. ....++||+|++|..+. |.+.
T Consensus 128 ~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~~~~~~fD~V~~~~~l~--------------~~~d------------ 181 (383)
T 4fsd_A 128 VEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEGVPDSSVDIVISNCVCN--------------LSTN------------ 181 (383)
T ss_dssp HHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCCCCTTCEEEEEEESCGG--------------GCSC------------
T ss_pred HHHhhhhcccccCCCceEEEEccHHHhhhcccCCCCCCCEEEEEEccchh--------------cCCC------------
Confidence 9876 3 32 46999999998731 22246899999984432 2221
Q ss_pred HHHHHHHHhcccCCCCC
Q 020573 308 LLHLCNGTASMLKPDKW 324 (324)
Q Consensus 308 ~~~il~~a~~~LkpgG~ 324 (324)
...+++++.++|||||+
T Consensus 182 ~~~~l~~~~r~LkpgG~ 198 (383)
T 4fsd_A 182 KLALFKEIHRVLRDGGE 198 (383)
T ss_dssp HHHHHHHHHHHEEEEEE
T ss_pred HHHHHHHHHHHcCCCCE
Confidence 23789999999999995
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.55 E-value=1.8e-14 Score=130.04 Aligned_cols=82 Identities=23% Similarity=0.396 Sum_probs=73.5
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEE
Q 020573 193 GLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVS 272 (324)
Q Consensus 193 ~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVs 272 (324)
..++.+|||+|||+|.++..+++.+++..+|+++|+++++++.|++|++.+++.++++++++|+.+.+. .++||+|++
T Consensus 91 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--~~~~D~v~~ 168 (255)
T 3mb5_A 91 ISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGIE--EENVDHVIL 168 (255)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCCC--CCSEEEEEE
T ss_pred CCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhccC--CCCcCEEEE
Confidence 345679999999999999999998667899999999999999999999999998889999999987654 368999999
Q ss_pred cCCC
Q 020573 273 NPPY 276 (324)
Q Consensus 273 NPPY 276 (324)
|+|.
T Consensus 169 ~~~~ 172 (255)
T 3mb5_A 169 DLPQ 172 (255)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 9884
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.54 E-value=3.6e-14 Score=139.74 Aligned_cols=121 Identities=19% Similarity=0.219 Sum_probs=94.3
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCC-CCeeEEEEc
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVE-GKLSGVVSN 273 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~-~~fDlIVsN 273 (324)
++.+|||+|||+|..+..++..++..++|+|+|+++.+++.+++|++++|+.+ ++++++|+.+...... ++||+|++|
T Consensus 259 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~-v~~~~~D~~~~~~~~~~~~fD~Vl~D 337 (450)
T 2yxl_A 259 PGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKI-VKPLVKDARKAPEIIGEEVADKVLLD 337 (450)
T ss_dssp TTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCS-EEEECSCTTCCSSSSCSSCEEEEEEE
T ss_pred CcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCc-EEEEEcChhhcchhhccCCCCEEEEc
Confidence 46799999999999999999987333899999999999999999999999864 9999999877532222 679999999
Q ss_pred CCCCCCCCcccchhhhhcccccccccCCCCcHHHH----HHHHHHHhcccCCCCC
Q 020573 274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYL----LHLCNGTASMLKPDKW 324 (324)
Q Consensus 274 PPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~----~~il~~a~~~LkpgG~ 324 (324)
|||...+.+ ++.|........+.+..+ +.+++.+.++|||||+
T Consensus 338 ~Pcsg~g~~--------~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~ 384 (450)
T 2yxl_A 338 APCTSSGTI--------GKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGR 384 (450)
T ss_dssp CCCCCGGGT--------TTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEE
T ss_pred CCCCCCeee--------ccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcE
Confidence 999765433 334444333333333222 6889999999999994
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.54 E-value=1.4e-14 Score=130.25 Aligned_cols=122 Identities=14% Similarity=0.051 Sum_probs=91.6
Q ss_pred cccchHHHHHHHHHHHhhhcC--CCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCc
Q 020573 171 IPRPETELMVDLVSDVLVRDN--DGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDI 248 (324)
Q Consensus 171 iPrp~te~lve~l~~~l~~~~--~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~r 248 (324)
.+++.++.+.+.+.+.+.... ....+.+|||+|||+|.+++.++... ++.+|+|+|+|+++++.|++|++.+++.+
T Consensus 44 ~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~- 121 (240)
T 1xdz_A 44 SITEKKEVYLKHFYDSITAAFYVDFNQVNTICDVGAGAGFPSLPIKICF-PHLHVTIVDSLNKRITFLEKLSEALQLEN- 121 (240)
T ss_dssp SCCSHHHHHHHTHHHHHGGGGTSCGGGCCEEEEECSSSCTTHHHHHHHC-TTCEEEEEESCHHHHHHHHHHHHHHTCSS-
T ss_pred ccCCHHHHHHHHHHHHHhHHHhcccCCCCEEEEecCCCCHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCC-
Confidence 345666666666655441110 11246799999999999999999864 77899999999999999999999999875
Q ss_pred EEEEEcccccccc--cCCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 249 IEIRQGSWFGKLK--DVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 249 v~~~~gD~~~~l~--~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
++++++|+.+... ...++||+|+++.- ..+..+++.+.++|||||+
T Consensus 122 v~~~~~d~~~~~~~~~~~~~fD~V~~~~~------------------------------~~~~~~l~~~~~~LkpgG~ 169 (240)
T 1xdz_A 122 TTFCHDRAETFGQRKDVRESYDIVTARAV------------------------------ARLSVLSELCLPLVKKNGL 169 (240)
T ss_dssp EEEEESCHHHHTTCTTTTTCEEEEEEECC------------------------------SCHHHHHHHHGGGEEEEEE
T ss_pred EEEEeccHHHhcccccccCCccEEEEecc------------------------------CCHHHHHHHHHHhcCCCCE
Confidence 9999999876321 12468999999530 0134688888999999984
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.54 E-value=2e-14 Score=126.63 Aligned_cols=123 Identities=16% Similarity=0.100 Sum_probs=93.2
Q ss_pred ccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCC----
Q 020573 172 PRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQD---- 247 (324)
Q Consensus 172 Prp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~---- 247 (324)
|.+......+.+.+.+ .. .++.+|||+|||+|.++..+++.. +..+|+|+|+|+.+++.|++|+..+++.+
T Consensus 10 p~~~~~~~~~~l~~~l-~~---~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~ 84 (217)
T 3jwh_A 10 PISLNQQRMNGVVAAL-KQ---SNARRVIDLGCGQGNLLKILLKDS-FFEQITGVDVSYRSLEIAQERLDRLRLPRNQWE 84 (217)
T ss_dssp -CCHHHHHHHHHHHHH-HH---TTCCEEEEETCTTCHHHHHHHHCT-TCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHT
T ss_pred CCCHHHHHHHHHHHHH-Hh---cCCCEEEEeCCCCCHHHHHHHhhC-CCCEEEEEECCHHHHHHHHHHHHHhcCCcccCc
Confidence 4455666677777766 21 245699999999999999999974 66899999999999999999998888764
Q ss_pred cEEEEEcccccccccCCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 248 IIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 248 rv~~~~gD~~~~l~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
+++++++|+... ....++||+|+++-.+ .|-+ -..+..+++++.++|||||+
T Consensus 85 ~v~~~~~d~~~~-~~~~~~fD~v~~~~~l--------------~~~~----------~~~~~~~l~~~~~~LkpgG~ 136 (217)
T 3jwh_A 85 RLQLIQGALTYQ-DKRFHGYDAATVIEVI--------------EHLD----------LSRLGAFERVLFEFAQPKIV 136 (217)
T ss_dssp TEEEEECCTTSC-CGGGCSCSEEEEESCG--------------GGCC----------HHHHHHHHHHHHTTTCCSEE
T ss_pred ceEEEeCCcccc-cccCCCcCEEeeHHHH--------------HcCC----------HHHHHHHHHHHHHHcCCCEE
Confidence 799999998542 2223689999996321 2222 12345789999999999984
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.54 E-value=7.6e-15 Score=147.78 Aligned_cols=144 Identities=19% Similarity=0.216 Sum_probs=99.8
Q ss_pred CCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhC--------------CCcEEEEEeCCHHH
Q 020573 167 EGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLG--------------SKGSIIAVDLNPLA 232 (324)
Q Consensus 167 ~~vliPrp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~--------------p~~~V~gvDis~~a 232 (324)
...|.|++.++++++.+.. ...+|+|+|||||.+.+.+++.+. ....++|+|+++.+
T Consensus 225 G~fyTP~~Vv~lmv~ll~p---------~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~ 295 (544)
T 3khk_A 225 GQYYTPKSIVTLIVEMLEP---------YKGRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTT 295 (544)
T ss_dssp TTTCCCHHHHHHHHHHHCC---------CSEEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHH
T ss_pred CeEeCCHHHHHHHHHHHhc---------CCCeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHH
Confidence 4567899888888876431 123899999999999999876541 04689999999999
Q ss_pred HHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcCCCCCCCCcccchhhhhccccccccc--------CCCCc
Q 020573 233 AAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALD--------GGVDG 304 (324)
Q Consensus 233 l~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~--------gg~dG 304 (324)
+++|+.|+..+|+..++.+.++|.+........+||+||+||||....-.. +.....++.... -...+
T Consensus 296 ~~lA~~Nl~l~gi~~~i~i~~gDtL~~~~~~~~~fD~Iv~NPPf~~~~~~~----~~~~~d~r~~~g~~~~~~~~~~~~~ 371 (544)
T 3khk_A 296 WKLAAMNMVIRGIDFNFGKKNADSFLDDQHPDLRADFVMTNPPFNMKDWWH----EKLADDPRWTINTNGEKRILTPPTG 371 (544)
T ss_dssp HHHHHHHHHHTTCCCBCCSSSCCTTTSCSCTTCCEEEEEECCCSSCCSCCC----GGGTTCGGGEECCC--CEECCCCTT
T ss_pred HHHHHHHHHHhCCCcccceeccchhcCcccccccccEEEECCCcCCccccc----hhhhhhhhhhcCcccccccccCCCc
Confidence 999999999999876666689998764333346899999999998532111 111222222211 00111
Q ss_pred HHHHHHHHHHHhcccCCCCC
Q 020573 305 LDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 305 l~~~~~il~~a~~~LkpgG~ 324 (324)
-..+ .+++.+.++|||||+
T Consensus 372 ~~~~-~Fl~~~l~~Lk~gGr 390 (544)
T 3khk_A 372 NANF-AWMLHMLYHLAPTGS 390 (544)
T ss_dssp CTHH-HHHHHHHHTEEEEEE
T ss_pred chhH-HHHHHHHHHhccCce
Confidence 1112 478888999999984
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=2.4e-14 Score=137.69 Aligned_cols=121 Identities=23% Similarity=0.175 Sum_probs=89.7
Q ss_pred chHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEE
Q 020573 174 PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQ 253 (324)
Q Consensus 174 p~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~ 253 (324)
|..+.+...+.... ..++.+|||+|||+|.+++.++... +.++|+|+|+|+.+++.|++|++.+|+.+++++.+
T Consensus 201 ~l~~~la~~l~~~~-----~~~~~~vLD~gCGsG~~~i~~a~~~-~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~ 274 (373)
T 3tm4_A 201 HLKASIANAMIELA-----ELDGGSVLDPMCGSGTILIELALRR-YSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQ 274 (373)
T ss_dssp CCCHHHHHHHHHHH-----TCCSCCEEETTCTTCHHHHHHHHTT-CCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEE
T ss_pred CccHHHHHHHHHhh-----cCCCCEEEEccCcCcHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEE
Confidence 33455555555433 1246689999999999999999974 55699999999999999999999999977899999
Q ss_pred cccccccccCCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhccc
Q 020573 254 GSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASML 319 (324)
Q Consensus 254 gD~~~~l~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~L 319 (324)
+|+.+.. ...++||+|++||||...... ...--+.|+.+++.+.++|
T Consensus 275 ~D~~~~~-~~~~~fD~Ii~npPyg~r~~~------------------~~~~~~ly~~~~~~l~r~l 321 (373)
T 3tm4_A 275 GDATQLS-QYVDSVDFAISNLPYGLKIGK------------------KSMIPDLYMKFFNELAKVL 321 (373)
T ss_dssp CCGGGGG-GTCSCEEEEEEECCCC------------------------CCHHHHHHHHHHHHHHHE
T ss_pred CChhhCC-cccCCcCEEEECCCCCcccCc------------------chhHHHHHHHHHHHHHHHc
Confidence 9998743 334689999999999642110 0011244677888888877
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.1e-13 Score=121.83 Aligned_cols=96 Identities=21% Similarity=0.214 Sum_probs=80.5
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEc
Q 020573 194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN 273 (324)
Q Consensus 194 ~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsN 273 (324)
.++.+|||+|||+|.+++.+++. ..+|+|+|+|+++++.|++|++.+++.++++++++|+.+.+... ++||+|+++
T Consensus 54 ~~~~~vLDlGcG~G~~~~~la~~---~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~-~~~D~v~~~ 129 (204)
T 3njr_A 54 RRGELLWDIGGGSGSVSVEWCLA---GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADL-PLPEAVFIG 129 (204)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTS-CCCSEEEEC
T ss_pred CCCCEEEEecCCCCHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccC-CCCCEEEEC
Confidence 35679999999999999999986 47999999999999999999999999867999999998855442 579999997
Q ss_pred CCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 274 PPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
+.. ... +++++.++|||||+
T Consensus 130 ~~~------------------------------~~~-~l~~~~~~LkpgG~ 149 (204)
T 3njr_A 130 GGG------------------------------SQA-LYDRLWEWLAPGTR 149 (204)
T ss_dssp SCC------------------------------CHH-HHHHHHHHSCTTCE
T ss_pred Ccc------------------------------cHH-HHHHHHHhcCCCcE
Confidence 421 012 67888899999984
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=9.2e-14 Score=128.80 Aligned_cols=110 Identities=15% Similarity=0.109 Sum_probs=89.1
Q ss_pred CCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEE
Q 020573 192 DGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVV 271 (324)
Q Consensus 192 ~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIV 271 (324)
...++.+|||+|||+|.++..+++.+ + .+|+|+|+|+.+++.|++++...++.++++++.+|+.+. .++||+|+
T Consensus 69 ~~~~~~~vLDiGcG~G~~~~~la~~~-~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~~~fD~v~ 142 (302)
T 3hem_A 69 NLEPGMTLLDIGCGWGSTMRHAVAEY-D-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF----DEPVDRIV 142 (302)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHHHHH-C-CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC----CCCCSEEE
T ss_pred CCCCcCEEEEeeccCcHHHHHHHHhC-C-CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc----CCCccEEE
Confidence 34456799999999999999999987 3 799999999999999999999999988899999999764 47999999
Q ss_pred EcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 272 SNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 272 sNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
++..+ .|-|... ...|.+.+..+++++.++|||||+
T Consensus 143 ~~~~~--------------~~~~d~~---~~~~~~~~~~~l~~~~~~LkpgG~ 178 (302)
T 3hem_A 143 SLGAF--------------EHFADGA---GDAGFERYDTFFKKFYNLTPDDGR 178 (302)
T ss_dssp EESCG--------------GGTTCCS---SCCCTTHHHHHHHHHHHSSCTTCE
T ss_pred EcchH--------------HhcCccc---cccchhHHHHHHHHHHHhcCCCcE
Confidence 97332 2222110 112456677899999999999995
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.54 E-value=6.5e-14 Score=135.34 Aligned_cols=99 Identities=25% Similarity=0.283 Sum_probs=81.5
Q ss_pred cchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCC--------------------------------
Q 020573 173 RPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSK-------------------------------- 220 (324)
Q Consensus 173 rp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~-------------------------------- 220 (324)
.|..|.+...++... ...++..++|++||||.+++.+|... .+
T Consensus 176 Apl~e~LAaall~l~----~~~~~~~llDp~CGSGt~lIEAa~~a-~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~ 250 (384)
T 3ldg_A 176 APIKENMAAAIILLS----NWFPDKPFVDPTCGSGTFCIEAAMIG-MNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQ 250 (384)
T ss_dssp CCCCHHHHHHHHHHT----TCCTTSCEEETTCTTSHHHHHHHHHH-TTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHh----CCCCCCeEEEeCCcCCHHHHHHHHHh-cCcCCCccccchhhhhccCCHHHHHHHHHHHHHh
Confidence 355677777766654 22346789999999999999999764 32
Q ss_pred ------cEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcCCCCC
Q 020573 221 ------GSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIP 278 (324)
Q Consensus 221 ------~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNPPYi~ 278 (324)
.+|+|+|+|+.|++.|++|++.+|+.+++++.++|+.+... ..+||+||+||||..
T Consensus 251 ~~~~~~~~v~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~--~~~fD~Iv~NPPYG~ 312 (384)
T 3ldg_A 251 ADYDIQLDISGFDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKT--NKINGVLISNPPYGE 312 (384)
T ss_dssp CCTTCCCCEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCC--CCCSCEEEECCCCTT
T ss_pred hhccCCceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCc--cCCcCEEEECCchhh
Confidence 46999999999999999999999999889999999988533 258999999999974
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=6.8e-14 Score=136.92 Aligned_cols=105 Identities=20% Similarity=0.209 Sum_probs=90.2
Q ss_pred ccCeeeeeeCCccccc--chHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHH
Q 020573 158 WRDLVLSVEEGVFIPR--PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAV 235 (324)
Q Consensus 158 f~~l~~~v~~~vliPr--p~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~ 235 (324)
+.|+.|.++++.|++. ..++.+++.+.+ + ..+.+|||+|||+|.+++.+|+. ..+|+|+|+|+.|++.
T Consensus 258 ~~g~~f~~~~~~F~q~n~~~~e~l~~~~~~-~------~~~~~VLDlgcG~G~~sl~la~~---~~~V~gvD~s~~ai~~ 327 (425)
T 2jjq_A 258 LDDVDYLIHPNSFFQTNSYQAVNLVRKVSE-L------VEGEKILDMYSGVGTFGIYLAKR---GFNVKGFDSNEFAIEM 327 (425)
T ss_dssp ETTEEEEECTTSCCCSBHHHHHHHHHHHHH-H------CCSSEEEEETCTTTHHHHHHHHT---TCEEEEEESCHHHHHH
T ss_pred ECCEEEEEccccccccCHHHHHHHHHHhhc-c------CCCCEEEEeeccchHHHHHHHHc---CCEEEEEECCHHHHHH
Confidence 4688999999999963 667888887776 4 13569999999999999999986 3699999999999999
Q ss_pred HHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcCCCC
Q 020573 236 AAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYI 277 (324)
Q Consensus 236 Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNPPYi 277 (324)
|++|++.+++. ++++++|+.+.+. .+||+|++|||+.
T Consensus 328 A~~n~~~ngl~--v~~~~~d~~~~~~---~~fD~Vv~dPPr~ 364 (425)
T 2jjq_A 328 ARRNVEINNVD--AEFEVASDREVSV---KGFDTVIVDPPRA 364 (425)
T ss_dssp HHHHHHHHTCC--EEEEECCTTTCCC---TTCSEEEECCCTT
T ss_pred HHHHHHHcCCc--EEEEECChHHcCc---cCCCEEEEcCCcc
Confidence 99999999985 9999999988643 2899999999984
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.52 E-value=4.4e-15 Score=134.48 Aligned_cols=115 Identities=18% Similarity=0.241 Sum_probs=92.5
Q ss_pred chHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEE
Q 020573 174 PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQ 253 (324)
Q Consensus 174 p~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~ 253 (324)
+++..++..+.... ++.+|||+|||+|..++.+|+.++++++|+++|+++++++.|++|++..|+.+++++++
T Consensus 46 ~~~~~~l~~l~~~~-------~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~ 118 (242)
T 3r3h_A 46 PEQAQFMQMLIRLT-------RAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRL 118 (242)
T ss_dssp HHHHHHHHHHHHHH-------TCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEE
T ss_pred HHHHHHHHHHHhhc-------CcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEE
Confidence 55555666555543 35699999999999999999987557899999999999999999999999988899999
Q ss_pred cccccccccC-----CCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 254 GSWFGKLKDV-----EGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 254 gD~~~~l~~~-----~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
+|..+.+... .++||+|+++.+. ..+..+++.+.++|||||+
T Consensus 119 gda~~~l~~~~~~~~~~~fD~V~~d~~~-----------------------------~~~~~~l~~~~~~LkpGG~ 165 (242)
T 3r3h_A 119 GPALDTLHSLLNEGGEHQFDFIFIDADK-----------------------------TNYLNYYELALKLVTPKGL 165 (242)
T ss_dssp SCHHHHHHHHHHHHCSSCEEEEEEESCG-----------------------------GGHHHHHHHHHHHEEEEEE
T ss_pred cCHHHHHHHHhhccCCCCEeEEEEcCCh-----------------------------HHhHHHHHHHHHhcCCCeE
Confidence 9998755432 3689999997441 1123578888999999995
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=1.5e-14 Score=139.32 Aligned_cols=109 Identities=21% Similarity=0.220 Sum_probs=89.9
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccC---CCCeeEEE
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDV---EGKLSGVV 271 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~---~~~fDlIV 271 (324)
.+.+|||+|||+|.+++.+++. ..+|+|+|+|+.+++.|++|++.+++.+ ++++++|+++.+... .++||+|+
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~---~~~v~~vD~s~~~~~~a~~n~~~n~~~~-~~~~~~d~~~~~~~~~~~~~~fD~Ii 284 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALG---FREVVAVDSSAEALRRAEENARLNGLGN-VRVLEANAFDLLRRLEKEGERFDLVV 284 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH---EEEEEEEESCHHHHHHHHHHHHHTTCTT-EEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEeeeccCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHHHHcCCCC-ceEEECCHHHHHHHHHhcCCCeeEEE
Confidence 4568999999999999999997 3799999999999999999999999977 999999998754421 36899999
Q ss_pred EcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 272 SNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 272 sNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
+||||...... .+ .++...+..++..+.++|+|||+
T Consensus 285 ~dpP~~~~~~~-----~~------------~~~~~~~~~~l~~~~~~LkpgG~ 320 (382)
T 1wxx_A 285 LDPPAFAKGKK-----DV------------ERAYRAYKEVNLRAIKLLKEGGI 320 (382)
T ss_dssp ECCCCSCCSTT-----SH------------HHHHHHHHHHHHHHHHTEEEEEE
T ss_pred ECCCCCCCChh-----HH------------HHHHHHHHHHHHHHHHhcCCCCE
Confidence 99998653321 11 12356778899999999999984
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.52 E-value=7.2e-15 Score=136.73 Aligned_cols=125 Identities=16% Similarity=0.065 Sum_probs=93.9
Q ss_pred cccccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCc
Q 020573 169 VFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDI 248 (324)
Q Consensus 169 vliPrp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~r 248 (324)
++.++...+.+.+.+...+ .++.+|||+|||+|.+++.++....++.+|+|+|+|+.+++.|++|+...++.++
T Consensus 98 ~l~~~~~~~~~~~~l~~~l------~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~ 171 (305)
T 3ocj_A 98 VLATRERHGHFRRALQRHL------RPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQ 171 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHC------CTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGG
T ss_pred hhcchHHHHHHHHHHHhhC------CCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCc
Confidence 3344444444444443222 2467999999999999999963224788999999999999999999999999888
Q ss_pred EEEEEcccccccccCCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 249 IEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 249 v~~~~gD~~~~l~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
++++++|+.+... .++||+|++|.++. |-|. .+....+++++.++|||||+
T Consensus 172 v~~~~~d~~~~~~--~~~fD~v~~~~~~~--------------~~~~---------~~~~~~~l~~~~~~LkpgG~ 222 (305)
T 3ocj_A 172 ITLHRQDAWKLDT--REGYDLLTSNGLNI--------------YEPD---------DARVTELYRRFWQALKPGGA 222 (305)
T ss_dssp EEEEECCGGGCCC--CSCEEEEECCSSGG--------------GCCC---------HHHHHHHHHHHHHHEEEEEE
T ss_pred eEEEECchhcCCc--cCCeEEEEECChhh--------------hcCC---------HHHHHHHHHHHHHhcCCCeE
Confidence 9999999987432 27999999987654 2111 23344689999999999995
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.52 E-value=7.1e-14 Score=121.97 Aligned_cols=114 Identities=22% Similarity=0.228 Sum_probs=89.4
Q ss_pred HHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccc
Q 020573 177 ELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSW 256 (324)
Q Consensus 177 e~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~ 256 (324)
..+.+.+.+.+ .. .+.+|||+|||+|.++..+++. ++.+|+|+|+|+.+++.|+++++..++.++++++++|+
T Consensus 30 ~~~~~~~~~~~----~~-~~~~vLdiG~G~G~~~~~l~~~--~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~ 102 (219)
T 3dlc_A 30 PIIAENIINRF----GI-TAGTCIDIGSGPGALSIALAKQ--SDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDV 102 (219)
T ss_dssp HHHHHHHHHHH----CC-CEEEEEEETCTTSHHHHHHHHH--SEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBT
T ss_pred HHHHHHHHHhc----CC-CCCEEEEECCCCCHHHHHHHHc--CCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCH
Confidence 34556666655 22 2339999999999999999997 56899999999999999999999999888899999999
Q ss_pred ccccccCCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 257 FGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 257 ~~~l~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
.+. +...++||+|+++..+. |-+ ....+++++.++|||||+
T Consensus 103 ~~~-~~~~~~~D~v~~~~~l~--------------~~~------------~~~~~l~~~~~~L~pgG~ 143 (219)
T 3dlc_A 103 HNI-PIEDNYADLIVSRGSVF--------------FWE------------DVATAFREIYRILKSGGK 143 (219)
T ss_dssp TBC-SSCTTCEEEEEEESCGG--------------GCS------------CHHHHHHHHHHHEEEEEE
T ss_pred HHC-CCCcccccEEEECchHh--------------hcc------------CHHHHHHHHHHhCCCCCE
Confidence 873 22347899999975432 211 123688899999999984
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=99.52 E-value=3.1e-14 Score=128.21 Aligned_cols=116 Identities=14% Similarity=0.159 Sum_probs=92.4
Q ss_pred cchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEE
Q 020573 173 RPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIR 252 (324)
Q Consensus 173 rp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~ 252 (324)
.+++..++..+.... ++.+|||+|||+|..++.+++.++++++|+++|+++++++.|++|+++.|+.++++++
T Consensus 55 ~~~~~~~l~~l~~~~-------~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~ 127 (237)
T 3c3y_A 55 SPLAGQLMSFVLKLV-------NAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFI 127 (237)
T ss_dssp CHHHHHHHHHHHHHT-------TCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEE
T ss_pred CHHHHHHHHHHHHhh-------CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEE
Confidence 345555666555433 3569999999999999999998754799999999999999999999999998889999
Q ss_pred EcccccccccC------CCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 253 QGSWFGKLKDV------EGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 253 ~gD~~~~l~~~------~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
++|+.+.++.+ .++||+|+++.+- ..+..+++.+.++|||||+
T Consensus 128 ~gda~~~l~~l~~~~~~~~~fD~I~~d~~~-----------------------------~~~~~~l~~~~~~L~pGG~ 176 (237)
T 3c3y_A 128 ESDAMLALDNLLQGQESEGSYDFGFVDADK-----------------------------PNYIKYHERLMKLVKVGGI 176 (237)
T ss_dssp ESCHHHHHHHHHHSTTCTTCEEEEEECSCG-----------------------------GGHHHHHHHHHHHEEEEEE
T ss_pred EcCHHHHHHHHHhccCCCCCcCEEEECCch-----------------------------HHHHHHHHHHHHhcCCCeE
Confidence 99998754432 3689999996320 0234678888999999995
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=5.8e-14 Score=127.67 Aligned_cols=115 Identities=17% Similarity=0.098 Sum_probs=90.5
Q ss_pred HHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccc
Q 020573 177 ELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSW 256 (324)
Q Consensus 177 e~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~ 256 (324)
...+..++..+ . ...++.+|||+|||+|.++..+++. +.++|+|+|+|+.+++.|+++++..++.++++++++|+
T Consensus 31 ~~~~~~~l~~l-~--~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~ 105 (267)
T 3kkz_A 31 PEVTLKALSFI-D--NLTEKSLIADIGCGTGGQTMVLAGH--VTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSM 105 (267)
T ss_dssp HHHHHHHHTTC-C--CCCTTCEEEEETCTTCHHHHHHHTT--CSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCT
T ss_pred HHHHHHHHHhc-c--cCCCCCEEEEeCCCCCHHHHHHHhc--cCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcCh
Confidence 34455555544 1 2335679999999999999999996 56799999999999999999999999988999999999
Q ss_pred ccccccCCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 257 FGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 257 ~~~l~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
.+. +...++||+|+++..+. |- ....+++++.++|||||+
T Consensus 106 ~~~-~~~~~~fD~i~~~~~~~--------------~~-------------~~~~~l~~~~~~LkpgG~ 145 (267)
T 3kkz_A 106 DDL-PFRNEELDLIWSEGAIY--------------NI-------------GFERGLNEWRKYLKKGGY 145 (267)
T ss_dssp TSC-CCCTTCEEEEEESSCGG--------------GT-------------CHHHHHHHHGGGEEEEEE
T ss_pred hhC-CCCCCCEEEEEEcCCce--------------ec-------------CHHHHHHHHHHHcCCCCE
Confidence 763 32347899999975542 10 123688999999999995
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=4.6e-14 Score=120.51 Aligned_cols=117 Identities=23% Similarity=0.290 Sum_probs=93.2
Q ss_pred cccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEE
Q 020573 171 IPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIE 250 (324)
Q Consensus 171 iPrp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~ 250 (324)
+|++..+.+.+.+.+.+ ...++.+|||+|||+|.++..+++.. .+|+|+|+|+.+++.|++|++.+++.++++
T Consensus 13 ~~~~~~~~~~~~~~~~~----~~~~~~~vldiG~G~G~~~~~l~~~~---~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~ 85 (192)
T 1l3i_A 13 VPGPTAMEVRCLIMCLA----EPGKNDVAVDVGCGTGGVTLELAGRV---RRVYAIDRNPEAISTTEMNLQRHGLGDNVT 85 (192)
T ss_dssp SCCCCCHHHHHHHHHHH----CCCTTCEEEEESCTTSHHHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHTTCCTTEE
T ss_pred CCCCChHHHHHHHHHhc----CCCCCCEEEEECCCCCHHHHHHHHhc---CEEEEEECCHHHHHHHHHHHHHcCCCcceE
Confidence 45566666777777665 23456799999999999999999863 799999999999999999999999866799
Q ss_pred EEEcccccccccCCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 251 IRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 251 ~~~gD~~~~l~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
+.++|+.+.+... ++||+|+++.++. .+..+++.+.++|+|||+
T Consensus 86 ~~~~d~~~~~~~~-~~~D~v~~~~~~~-----------------------------~~~~~l~~~~~~l~~gG~ 129 (192)
T 1l3i_A 86 LMEGDAPEALCKI-PDIDIAVVGGSGG-----------------------------ELQEILRIIKDKLKPGGR 129 (192)
T ss_dssp EEESCHHHHHTTS-CCEEEEEESCCTT-----------------------------CHHHHHHHHHHTEEEEEE
T ss_pred EEecCHHHhcccC-CCCCEEEECCchH-----------------------------HHHHHHHHHHHhcCCCcE
Confidence 9999987744432 4899999987651 013578888889998884
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=99.51 E-value=2.6e-14 Score=126.84 Aligned_cols=101 Identities=16% Similarity=0.214 Sum_probs=83.2
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccC--C---CCeeE
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDV--E---GKLSG 269 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~--~---~~fDl 269 (324)
++.+|||+|||+|..++.+++.++++.+|+++|+++.+++.|++|++.+++.++++++++|+.+.+... . ++||+
T Consensus 69 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~ 148 (229)
T 2avd_A 69 QAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDV 148 (229)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEE
T ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCccE
Confidence 356999999999999999999864478999999999999999999999999888999999987654322 1 58999
Q ss_pred EEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 270 VVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 270 IVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
|++|+|.. .+..+++.+.++|+|||+
T Consensus 149 v~~d~~~~-----------------------------~~~~~l~~~~~~L~pgG~ 174 (229)
T 2avd_A 149 AVVDADKE-----------------------------NCSAYYERCLQLLRPGGI 174 (229)
T ss_dssp EEECSCST-----------------------------THHHHHHHHHHHEEEEEE
T ss_pred EEECCCHH-----------------------------HHHHHHHHHHHHcCCCeE
Confidence 99987721 123567888889999884
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.51 E-value=5.6e-14 Score=136.19 Aligned_cols=99 Identities=30% Similarity=0.286 Sum_probs=81.7
Q ss_pred cchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCC--------------------------------
Q 020573 173 RPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSK-------------------------------- 220 (324)
Q Consensus 173 rp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~-------------------------------- 220 (324)
.|..|.+...++... ...++..+||+|||||.+++.+|... .+
T Consensus 183 Apl~e~lAa~ll~l~----~~~~~~~vlDp~CGSGt~~ieaa~~~-~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~ 257 (393)
T 3k0b_A 183 APIKETMAAALVLLT----SWHPDRPFYDPVCGSGTIPIEAALIG-QNIAPGFNREFVSETWDWMPKQVWADARQEAEDL 257 (393)
T ss_dssp CSCCHHHHHHHHHHS----CCCTTSCEEETTCTTSHHHHHHHHHH-TTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHh----CCCCCCeEEEcCCCCCHHHHHHHHHh-cCcCCCccccchhhccccCCHHHHHHHHHHHHHh
Confidence 356677777776654 22346689999999999999999864 22
Q ss_pred ------cEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcCCCCC
Q 020573 221 ------GSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIP 278 (324)
Q Consensus 221 ------~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNPPYi~ 278 (324)
.+|+|+|+|+.|++.|++|++.+|+.+++++.++|+.+... .++||+||+||||..
T Consensus 258 ~~~~~~~~V~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~--~~~fD~Iv~NPPYg~ 319 (393)
T 3k0b_A 258 ANYDQPLNIIGGDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQT--EDEYGVVVANPPYGE 319 (393)
T ss_dssp CCTTCCCCEEEEESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCC--CCCSCEEEECCCCCC
T ss_pred hcccCCceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCC--CCCCCEEEECCCCcc
Confidence 46999999999999999999999998889999999988543 358999999999974
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.51 E-value=1.5e-14 Score=142.06 Aligned_cols=137 Identities=20% Similarity=0.239 Sum_probs=96.4
Q ss_pred cccccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhC------------CCcEEEEEeCCHHHHHHH
Q 020573 169 VFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLG------------SKGSIIAVDLNPLAAAVA 236 (324)
Q Consensus 169 vliPrp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~------------p~~~V~gvDis~~al~~A 236 (324)
.+.|++..+.+++.+. ...+.+|+|+|||||.+++.+++.+. ...+++|+|+++.++++|
T Consensus 153 fyTP~~v~~~mv~~l~--------~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA 224 (445)
T 2okc_A 153 YFTPRPLIQAMVDCIN--------PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLA 224 (445)
T ss_dssp GCCCHHHHHHHHHHHC--------CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHH
T ss_pred ccCcHHHHHHHHHHhC--------CCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHH
Confidence 4678776666665432 22356899999999999999988641 235799999999999999
Q ss_pred HHHHHHcCCCC-cEEEEEcccccccccCCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHH
Q 020573 237 AFNAQRYGLQD-IIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGT 315 (324)
Q Consensus 237 r~N~~~~gl~~-rv~~~~gD~~~~l~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a 315 (324)
+.|+..+|+.. ++++.++|.+..... ++||+||+||||........ ...+.+. ....+.. ...+++++
T Consensus 225 ~~nl~l~g~~~~~~~i~~gD~l~~~~~--~~fD~Iv~NPPf~~~~~~~~---~~~~~~~--~~~~~~~----~~~fl~~~ 293 (445)
T 2okc_A 225 SMNLYLHGIGTDRSPIVCEDSLEKEPS--TLVDVILANPPFGTRPAGSV---DINRPDF--YVETKNN----QLNFLQHM 293 (445)
T ss_dssp HHHHHHTTCCSSCCSEEECCTTTSCCS--SCEEEEEECCCSSCCCTTCC---CCCCTTS--SSCCSCH----HHHHHHHH
T ss_pred HHHHHHhCCCcCCCCEeeCCCCCCccc--CCcCEEEECCCCCCcccccc---hhhHhhc--CCCCcch----HHHHHHHH
Confidence 99999999853 588999998875332 48999999999987544321 1001111 1111211 23577888
Q ss_pred hcccCCCCC
Q 020573 316 ASMLKPDKW 324 (324)
Q Consensus 316 ~~~LkpgG~ 324 (324)
.++|||||.
T Consensus 294 ~~~Lk~gG~ 302 (445)
T 2okc_A 294 MLMLKTGGR 302 (445)
T ss_dssp HHHEEEEEE
T ss_pred HHHhccCCE
Confidence 899999984
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=99.51 E-value=4.5e-14 Score=136.50 Aligned_cols=98 Identities=24% Similarity=0.236 Sum_probs=81.0
Q ss_pred chHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCC---------------------------------
Q 020573 174 PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSK--------------------------------- 220 (324)
Q Consensus 174 p~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~--------------------------------- 220 (324)
|..|.++..++... ...++.++||+|||||.+++.+|... .+
T Consensus 178 pl~e~lAa~ll~~~----~~~~~~~vlDp~CGSGt~lieaa~~~-~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~ 252 (385)
T 3ldu_A 178 PIRETLAAGLIYLT----PWKAGRVLVDPMCGSGTILIEAAMIG-INMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKI 252 (385)
T ss_dssp CCCHHHHHHHHHTS----CCCTTSCEEETTCTTCHHHHHHHHHH-TTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHS
T ss_pred CCcHHHHHHHHHhh----CCCCCCeEEEcCCCCCHHHHHHHHHH-hhhCCCcccccchhhcccCCHHHHHHHHHHHHHHh
Confidence 55667777766554 23346789999999999999998863 22
Q ss_pred -----cEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcCCCCC
Q 020573 221 -----GSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIP 278 (324)
Q Consensus 221 -----~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNPPYi~ 278 (324)
.+|+|+|+|+.|++.|++|++.+|+.+++++.++|+.+... .++||+||+||||..
T Consensus 253 ~~~~~~~V~GvDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~--~~~~D~Iv~NPPyg~ 313 (385)
T 3ldu_A 253 DNESKFKIYGYDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKS--EDEFGFIITNPPYGE 313 (385)
T ss_dssp CCSCCCCEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCC--SCBSCEEEECCCCCC
T ss_pred hccCCceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCc--CCCCcEEEECCCCcC
Confidence 57999999999999999999999998789999999988543 358999999999974
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.9e-13 Score=122.26 Aligned_cols=105 Identities=17% Similarity=0.180 Sum_probs=83.9
Q ss_pred CCcccccchHHHHHHHHHHHh------------hhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHH
Q 020573 167 EGVFIPRPETELMVDLVSDVL------------VRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAA 234 (324)
Q Consensus 167 ~~vliPrp~te~lve~l~~~l------------~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~ 234 (324)
+.+++|+|+++.+.+.+.... .......++.+|||+|||+|.+++.+++. ..+|+++|+++.+++
T Consensus 51 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~---~~~v~~vD~~~~~~~ 127 (248)
T 2yvl_A 51 NGFEVYRPTLEEIILLGFERKTQIIYPKDSFYIALKLNLNKEKRVLEFGTGSGALLAVLSEV---AGEVWTFEAVEEFYK 127 (248)
T ss_dssp TTEEEECCCHHHHHHHTSCCSSCCCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH---SSEEEEECSCHHHHH
T ss_pred EEEEEeCCCHHHHHHhcCcCCCCcccchhHHHHHHhcCCCCCCEEEEeCCCccHHHHHHHHh---CCEEEEEecCHHHHH
Confidence 678889999888775443211 01112235679999999999999999997 479999999999999
Q ss_pred HHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcCC
Q 020573 235 VAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPP 275 (324)
Q Consensus 235 ~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNPP 275 (324)
.|++|++.+++.+++++..+|+.+.... .++||+|++|+|
T Consensus 128 ~a~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~D~v~~~~~ 167 (248)
T 2yvl_A 128 TAQKNLKKFNLGKNVKFFNVDFKDAEVP-EGIFHAAFVDVR 167 (248)
T ss_dssp HHHHHHHHTTCCTTEEEECSCTTTSCCC-TTCBSEEEECSS
T ss_pred HHHHHHHHcCCCCcEEEEEcChhhcccC-CCcccEEEECCc
Confidence 9999999999877899999999885411 358999999877
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.50 E-value=1.9e-13 Score=128.43 Aligned_cols=120 Identities=15% Similarity=0.097 Sum_probs=86.6
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccC--CCCeeEEEE
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDV--EGKLSGVVS 272 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~--~~~fDlIVs 272 (324)
++.+|||+|||+|..++.+|+.+++.++|+|+|+++.+++.+++|++++|+. +++++++|+.+..... .++||.|++
T Consensus 102 ~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~-~v~~~~~D~~~~~~~~~~~~~fD~Vl~ 180 (309)
T 2b9e_A 102 PGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVS-CCELAEEDFLAVSPSDPRYHEVHYILL 180 (309)
T ss_dssp TTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCGGGSCTTCGGGTTEEEEEE
T ss_pred CCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeCChHhcCccccccCCCCEEEE
Confidence 4679999999999999999998756689999999999999999999999986 4999999987643221 147999999
Q ss_pred cCCCCCCCCcccchhhhhccccccccc--CCCCc---H-HHHHHHHHHHhcccCCCCC
Q 020573 273 NPPYIPSDDISGLQVEVGKHEPRLALD--GGVDG---L-DYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 273 NPPYi~~~~~~~l~~ev~~~eP~~aL~--gg~dG---l-~~~~~il~~a~~~LkpgG~ 324 (324)
||||...+.+.. .|..... -..+. + ...+.+++.|.++|+ ||+
T Consensus 181 D~PcSg~G~~~r--------~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~ 229 (309)
T 2b9e_A 181 DPSCSGSGMPSR--------QLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQR 229 (309)
T ss_dssp CCCCCC--------------------------CCHHHHHHHHHHHHHHHTTCTT-CCE
T ss_pred cCCcCCCCCCcc--------CCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCE
Confidence 999986654321 1211110 01112 2 344678999999987 773
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=8.9e-14 Score=125.14 Aligned_cols=117 Identities=19% Similarity=0.136 Sum_probs=90.7
Q ss_pred hHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEc
Q 020573 175 ETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQG 254 (324)
Q Consensus 175 ~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~g 254 (324)
.....+..++..+ . ...++.+|||+|||+|.++..+++.. + .+|+|+|+|+.+++.|++|+..+++.++++++++
T Consensus 29 ~~~~~~~~~l~~l-~--~~~~~~~vLDiG~G~G~~~~~l~~~~-~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~ 103 (257)
T 3f4k_A 29 GSPEATRKAVSFI-N--ELTDDAKIADIGCGTGGQTLFLADYV-K-GQITGIDLFPDFIEIFNENAVKANCADRVKGITG 103 (257)
T ss_dssp CCHHHHHHHHTTS-C--CCCTTCEEEEETCTTSHHHHHHHHHC-C-SEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEEC
T ss_pred CCHHHHHHHHHHH-h--cCCCCCeEEEeCCCCCHHHHHHHHhC-C-CeEEEEECCHHHHHHHHHHHHHcCCCCceEEEEC
Confidence 3344555555544 1 22346799999999999999999985 4 4999999999999999999999999989999999
Q ss_pred ccccccccCCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 255 SWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 255 D~~~~l~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
|+.+ ++...++||+|+++-.+. |- ....+++++.++|||||+
T Consensus 104 d~~~-~~~~~~~fD~v~~~~~l~--------------~~-------------~~~~~l~~~~~~L~pgG~ 145 (257)
T 3f4k_A 104 SMDN-LPFQNEELDLIWSEGAIY--------------NI-------------GFERGMNEWSKYLKKGGF 145 (257)
T ss_dssp CTTS-CSSCTTCEEEEEEESCSC--------------CC-------------CHHHHHHHHHTTEEEEEE
T ss_pred Chhh-CCCCCCCEEEEEecChHh--------------hc-------------CHHHHHHHHHHHcCCCcE
Confidence 9965 333347999999974332 10 023688999999999995
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=4.6e-14 Score=131.64 Aligned_cols=151 Identities=11% Similarity=0.081 Sum_probs=102.8
Q ss_pred CCCceeEEe-cccccCeeeeeeCCcccccchH----HHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCC
Q 020573 146 RKPFQYLVG-CEHWRDLVLSVEEGVFIPRPET----ELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSK 220 (324)
Q Consensus 146 ~~pl~yi~g-~~~f~~l~~~v~~~vliPrp~t----e~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~ 220 (324)
.-+.|++.- ....+|..+.++..+.+++.+. |.++...+ + . ...+.+|||+|||+|.++..+++.. +.
T Consensus 42 ~s~~q~i~v~~~~~~g~~l~ldg~~~~~~~de~~y~e~l~~~~l--~-~---~~~~~~VLdiG~G~G~~~~~l~~~~-~~ 114 (296)
T 1inl_A 42 QSDIQRIDIFENPDLGVVFALDGITMTTEKDEFMYHEMLAHVPM--F-L---HPNPKKVLIIGGGDGGTLREVLKHD-SV 114 (296)
T ss_dssp ECSSCEEEEEEETTTEEEEEETTEEEEETTTHHHHHHHHHHHHH--H-H---SSSCCEEEEEECTTCHHHHHHTTST-TC
T ss_pred ECCCccEEEEEcCCCcEEEEECCEEeecccchhHHHHHHhHHHH--h-c---CCCCCEEEEEcCCcCHHHHHHHhcC-CC
Confidence 356676543 2234578888887666666653 33332221 1 1 1235799999999999999999874 56
Q ss_pred cEEEEEeCCHHHHHHHHHHHHH--cCC-CCcEEEEEcccccccccCCCCeeEEEEcCCCCCCCCcccchhhhhccccccc
Q 020573 221 GSIIAVDLNPLAAAVAAFNAQR--YGL-QDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLA 297 (324)
Q Consensus 221 ~~V~gvDis~~al~~Ar~N~~~--~gl-~~rv~~~~gD~~~~l~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~a 297 (324)
.+|+++|+|+.+++.|++|+.. .++ .++++++.+|+.+.+....++||+|++|+|.... .|...
T Consensus 115 ~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~d~~~~~~-------------~~~~~ 181 (296)
T 1inl_A 115 EKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIIIDSTDPTA-------------GQGGH 181 (296)
T ss_dssp SEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEEEC-----------------------
T ss_pred CEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEEEcCCCccc-------------Cchhh
Confidence 8999999999999999999865 334 3579999999877554445689999999874200 01001
Q ss_pred ccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 298 LDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 298 L~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
+ ....+++.+.++|||||+
T Consensus 182 l--------~~~~~l~~~~~~LkpgG~ 200 (296)
T 1inl_A 182 L--------FTEEFYQACYDALKEDGV 200 (296)
T ss_dssp C--------CSHHHHHHHHHHEEEEEE
T ss_pred h--------hHHHHHHHHHHhcCCCcE
Confidence 1 124678888999999985
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.50 E-value=5.8e-14 Score=123.68 Aligned_cols=121 Identities=17% Similarity=0.076 Sum_probs=90.8
Q ss_pred chHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCC----cE
Q 020573 174 PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQD----II 249 (324)
Q Consensus 174 p~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~----rv 249 (324)
+......+.+.+.+ .. .++.+|||+|||+|.++..+++.. +..+|+|+|+|+.+++.|++++..+++.+ ++
T Consensus 12 ~~~~~~~~~l~~~l-~~---~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v 86 (219)
T 3jwg_A 12 NLNQQRLGTVVAVL-KS---VNAKKVIDLGCGEGNLLSLLLKDK-SFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRI 86 (219)
T ss_dssp CHHHHHHHHHHHHH-HH---TTCCEEEEETCTTCHHHHHHHTST-TCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTE
T ss_pred cchHHHHHHHHHHH-hh---cCCCEEEEecCCCCHHHHHHHhcC-CCCEEEEEECCHHHHHHHHHHHHhhccccccCcce
Confidence 34455556666655 21 246799999999999999999874 66899999999999999999998877764 79
Q ss_pred EEEEcccccccccCCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 250 EIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 250 ~~~~gD~~~~l~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
+++++|+... ....++||+|+++-. ..|-+ -..+..+++++.++|||||+
T Consensus 87 ~~~~~d~~~~-~~~~~~fD~V~~~~~--------------l~~~~----------~~~~~~~l~~~~~~LkpgG~ 136 (219)
T 3jwg_A 87 SLFQSSLVYR-DKRFSGYDAATVIEV--------------IEHLD----------ENRLQAFEKVLFEFTRPQTV 136 (219)
T ss_dssp EEEECCSSSC-CGGGTTCSEEEEESC--------------GGGCC----------HHHHHHHHHHHHTTTCCSEE
T ss_pred EEEeCccccc-ccccCCCCEEEEHHH--------------HHhCC----------HHHHHHHHHHHHHhhCCCEE
Confidence 9999998543 222468999999522 22322 12345789999999999984
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=1.5e-13 Score=133.07 Aligned_cols=117 Identities=18% Similarity=0.190 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH-------HcCCC-C
Q 020573 176 TELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ-------RYGLQ-D 247 (324)
Q Consensus 176 te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~-------~~gl~-~ 247 (324)
....+..+++.+ ...++.+|||||||+|.+++.+|... +..+|+|||+++.++++|++|++ .+|+. +
T Consensus 158 ~~~~i~~il~~l----~l~~gd~VLDLGCGtG~l~l~lA~~~-g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~ 232 (438)
T 3uwp_A 158 SFDLVAQMIDEI----KMTDDDLFVDLGSGVGQVVLQVAAAT-NCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHA 232 (438)
T ss_dssp HHHHHHHHHHHH----CCCTTCEEEEESCTTSHHHHHHHHHC-CCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCC
T ss_pred CHHHHHHHHHhc----CCCCCCEEEEeCCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 344555555555 34467799999999999999999875 55579999999999999998763 45663 6
Q ss_pred cEEEEEccccccccc-CCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 248 IIEIRQGSWFGKLKD-VEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 248 rv~~~~gD~~~~l~~-~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
+|+|++||+++.... ....||+|++|++|.. ++ ....+.+..+.|||||.
T Consensus 233 rVefi~GD~~~lp~~d~~~~aDVVf~Nn~~F~--------pd-------------------l~~aL~Ei~RvLKPGGr 283 (438)
T 3uwp_A 233 EYTLERGDFLSEEWRERIANTSVIFVNNFAFG--------PE-------------------VDHQLKERFANMKEGGR 283 (438)
T ss_dssp EEEEEECCTTSHHHHHHHHTCSEEEECCTTCC--------HH-------------------HHHHHHHHHTTSCTTCE
T ss_pred CeEEEECcccCCccccccCCccEEEEcccccC--------ch-------------------HHHHHHHHHHcCCCCcE
Confidence 799999999874211 0137999999998742 11 12455677899999994
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.49 E-value=2.4e-13 Score=123.56 Aligned_cols=116 Identities=17% Similarity=0.171 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcc
Q 020573 176 TELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGS 255 (324)
Q Consensus 176 te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD 255 (324)
.+.+++.+.+.+ ...++.+|||+|||+|.++..+++.. +.+|+|+|+|+.+++.|++++...++.++++++.+|
T Consensus 46 ~~~~~~~l~~~~----~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d 119 (273)
T 3bus_A 46 TDRLTDEMIALL----DVRSGDRVLDVGCGIGKPAVRLATAR--DVRVTGISISRPQVNQANARATAAGLANRVTFSYAD 119 (273)
T ss_dssp HHHHHHHHHHHS----CCCTTCEEEEESCTTSHHHHHHHHHS--CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECC
T ss_pred HHHHHHHHHHhc----CCCCCCEEEEeCCCCCHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECc
Confidence 344555555544 33456799999999999999999974 579999999999999999999999998889999999
Q ss_pred cccccccCCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 256 WFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 256 ~~~~l~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
+.+. +...++||+|+++-.+. |-+. ...+++++.++|||||+
T Consensus 120 ~~~~-~~~~~~fD~v~~~~~l~--------------~~~~------------~~~~l~~~~~~L~pgG~ 161 (273)
T 3bus_A 120 AMDL-PFEDASFDAVWALESLH--------------HMPD------------RGRALREMARVLRPGGT 161 (273)
T ss_dssp TTSC-CSCTTCEEEEEEESCTT--------------TSSC------------HHHHHHHHHTTEEEEEE
T ss_pred cccC-CCCCCCccEEEEechhh--------------hCCC------------HHHHHHHHHHHcCCCeE
Confidence 9773 32346899999964432 2111 13688999999999984
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=1.2e-13 Score=133.20 Aligned_cols=81 Identities=14% Similarity=0.016 Sum_probs=70.2
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHc---------------CCCCcEEEEEcccccc
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRY---------------GLQDIIEIRQGSWFGK 259 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~---------------gl~~rv~~~~gD~~~~ 259 (324)
.+.+|||+|||+|.+++.++++. +..+|+++|+++++++.|++|++.+ ++.+ ++++++|+.+.
T Consensus 47 ~~~~VLDl~aGtG~~~l~~a~~~-~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~-i~v~~~Da~~~ 124 (378)
T 2dul_A 47 NPKIVLDALSATGIRGIRFALET-PAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKT-IVINHDDANRL 124 (378)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHS-SCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSE-EEEEESCHHHH
T ss_pred CCCEEEECCCchhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCc-eEEEcCcHHHH
Confidence 35699999999999999999986 5678999999999999999999999 8865 99999999875
Q ss_pred cccCCCCeeEEEEcCCCC
Q 020573 260 LKDVEGKLSGVVSNPPYI 277 (324)
Q Consensus 260 l~~~~~~fDlIVsNPPYi 277 (324)
+....++||+|+.|||+.
T Consensus 125 ~~~~~~~fD~I~lDP~~~ 142 (378)
T 2dul_A 125 MAERHRYFHFIDLDPFGS 142 (378)
T ss_dssp HHHSTTCEEEEEECCSSC
T ss_pred HHhccCCCCEEEeCCCCC
Confidence 543345899999998763
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.48 E-value=2.2e-13 Score=115.50 Aligned_cols=92 Identities=21% Similarity=0.220 Sum_probs=77.2
Q ss_pred chHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEE
Q 020573 174 PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQ 253 (324)
Q Consensus 174 p~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~ 253 (324)
+.++.+.+.+.+.+ ...++.+|||+|||+|.++..+++ +..+|+|+|+|+.+++.|++|++.+++. ++++++
T Consensus 18 ~~~~~~~~~~~~~~----~~~~~~~vLdiG~G~G~~~~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~~~~~ 89 (183)
T 2yxd_A 18 ITKEEIRAVSIGKL----NLNKDDVVVDVGCGSGGMTVEIAK---RCKFVYAIDYLDGAIEVTKQNLAKFNIK-NCQIIK 89 (183)
T ss_dssp CCCHHHHHHHHHHH----CCCTTCEEEEESCCCSHHHHHHHT---TSSEEEEEECSHHHHHHHHHHHHHTTCC-SEEEEE
T ss_pred cCHHHHHHHHHHHc----CCCCCCEEEEeCCCCCHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEE
Confidence 44566677777666 233567999999999999999988 4589999999999999999999999984 599999
Q ss_pred cccccccccCCCCeeEEEEcCC
Q 020573 254 GSWFGKLKDVEGKLSGVVSNPP 275 (324)
Q Consensus 254 gD~~~~l~~~~~~fDlIVsNPP 275 (324)
+|+.+.++. ++||+|++|++
T Consensus 90 ~d~~~~~~~--~~~D~i~~~~~ 109 (183)
T 2yxd_A 90 GRAEDVLDK--LEFNKAFIGGT 109 (183)
T ss_dssp SCHHHHGGG--CCCSEEEECSC
T ss_pred CCccccccC--CCCcEEEECCc
Confidence 999885543 68999999988
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=99.48 E-value=4e-14 Score=146.20 Aligned_cols=154 Identities=12% Similarity=0.044 Sum_probs=102.7
Q ss_pred CCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhC--CCcEEEEEeCCHHHHHHH--HHHHHH
Q 020573 167 EGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLG--SKGSIIAVDLNPLAAAVA--AFNAQR 242 (324)
Q Consensus 167 ~~vliPrp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~--p~~~V~gvDis~~al~~A--r~N~~~ 242 (324)
..++.|+.....+++.+...+ . .....+.+|+|+|||||++++.+++.++ ...+++|+|+++.+++.| +.|+..
T Consensus 295 GqFYTP~eLA~lMVeLA~ill-~-~~l~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~l 372 (878)
T 3s1s_A 295 GVVPTDIELGKVLSIISQHIL-G-RPLTEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLF 372 (878)
T ss_dssp BSSSCCHHHHHHHHHHHHHHH-C-SCCCTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTS
T ss_pred ceEcCCHHHHHHHHHHHhhhc-c-ccCCCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHH
Confidence 446778888888887744333 1 1122467999999999999999998762 135799999999999999 888765
Q ss_pred c----CCCCcEEEEEcccccccccCCCCeeEEEEcCCCCCCCCcccchhhh----hcccccccccCCCCcHHHHHHHHHH
Q 020573 243 Y----GLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEV----GKHEPRLALDGGVDGLDYLLHLCNG 314 (324)
Q Consensus 243 ~----gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNPPYi~~~~~~~l~~ev----~~~eP~~aL~gg~dGl~~~~~il~~ 314 (324)
+ ++.. ..+...|+++......++||+||+||||+..........+. ....|... ..+.++.+.+..|++.
T Consensus 373 N~LlhGi~~-~~I~~dD~L~~~~~~~~kFDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p-~s~~G~~DLy~aFIe~ 450 (878)
T 3s1s_A 373 PQLVSSNNA-PTITGEDVCSLNPEDFANVSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRP-QTLFGQIGVEALFLEL 450 (878)
T ss_dssp TTTCBTTBC-CEEECCCGGGCCGGGGTTEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCC-SSCSSSCCHHHHHHHH
T ss_pred hhhhcCCCc-ceEEecchhcccccccCCCCEEEECCCccccccchhhhhhHHHHhhhhccccc-cccccccchHHHHHHH
Confidence 3 3332 45666777653222236899999999998644332211111 11111111 1123456788899999
Q ss_pred HhcccCCCCC
Q 020573 315 TASMLKPDKW 324 (324)
Q Consensus 315 a~~~LkpgG~ 324 (324)
+.++|++||+
T Consensus 451 Al~lLKpGGr 460 (878)
T 3s1s_A 451 VTELVQDGTV 460 (878)
T ss_dssp HHHHSCTTCE
T ss_pred HHHhcCCCcE
Confidence 9999999994
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.48 E-value=6.4e-14 Score=124.65 Aligned_cols=91 Identities=21% Similarity=0.188 Sum_probs=75.2
Q ss_pred cccccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCc
Q 020573 169 VFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDI 248 (324)
Q Consensus 169 vliPrp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~r 248 (324)
..+|+++++.+++.++... . .++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|++| ..+
T Consensus 27 ~~~~~~~~~~l~~~~~~~~-~----~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~------~~~ 92 (226)
T 3m33_A 27 RVLSGPDPELTFDLWLSRL-L----TPQTRVLEAGCGHGPDAARFGPQ---AARWAAYDFSPELLKLARAN------APH 92 (226)
T ss_dssp CEESSSCTTHHHHHHHHHH-C----CTTCEEEEESCTTSHHHHHHGGG---SSEEEEEESCHHHHHHHHHH------CTT
T ss_pred cccCCCCHHHHHHHHHHhc-C----CCCCeEEEeCCCCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHh------CCC
Confidence 4567888888888877654 1 24679999999999999999986 37999999999999999998 235
Q ss_pred EEEEEcccccccccC-CCCeeEEEEc
Q 020573 249 IEIRQGSWFGKLKDV-EGKLSGVVSN 273 (324)
Q Consensus 249 v~~~~gD~~~~l~~~-~~~fDlIVsN 273 (324)
++++++|+.+.++.. .++||+|++|
T Consensus 93 ~~~~~~d~~~~~~~~~~~~fD~v~~~ 118 (226)
T 3m33_A 93 ADVYEWNGKGELPAGLGAPFGLIVSR 118 (226)
T ss_dssp SEEEECCSCSSCCTTCCCCEEEEEEE
T ss_pred ceEEEcchhhccCCcCCCCEEEEEeC
Confidence 999999997666543 5799999998
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=99.48 E-value=5.6e-14 Score=141.46 Aligned_cols=138 Identities=20% Similarity=0.229 Sum_probs=98.4
Q ss_pred CCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCC-----------------CcEEEEEeCC
Q 020573 167 EGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGS-----------------KGSIIAVDLN 229 (324)
Q Consensus 167 ~~vliPrp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p-----------------~~~V~gvDis 229 (324)
...|.|++.++++++.+. ...+.+|+|+|||||.+++.+++.+.. ..+++|+|++
T Consensus 149 G~fyTP~~iv~~mv~~l~--------p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid 220 (541)
T 2ar0_A 149 GQYFTPRPLIKTIIHLLK--------PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELV 220 (541)
T ss_dssp -CCCCCHHHHHHHHHHHC--------CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESC
T ss_pred CeeeCCHHHHHHHHHHhc--------cCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCC
Confidence 447788887777766432 123568999999999999999886521 1379999999
Q ss_pred HHHHHHHHHHHHHcCCCC----cEEEEEcccccccccCCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcH
Q 020573 230 PLAAAVAAFNAQRYGLQD----IIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGL 305 (324)
Q Consensus 230 ~~al~~Ar~N~~~~gl~~----rv~~~~gD~~~~l~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl 305 (324)
+.++++|+.|+..+|+.+ ++.+.++|.+.......++||+||+||||....... . +.... . .....
T Consensus 221 ~~~~~lA~~nl~l~gi~~~~~~~~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~-----~-~~~~~--~--~~~~~ 290 (541)
T 2ar0_A 221 PGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTN-----I-TRTFV--H--PTSNK 290 (541)
T ss_dssp HHHHHHHHHHHHTTTCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCC-----C-CSCCS--S--CCSCH
T ss_pred HHHHHHHHHHHHHhCCCccccccCCeEeCCCcccccccccCCeEEEECCCcccccchh-----h-HhhcC--C--CCCch
Confidence 999999999999888864 378999998764322236899999999998765432 0 11100 0 11111
Q ss_pred HHHHHHHHHHhcccCCCCC
Q 020573 306 DYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 306 ~~~~~il~~a~~~LkpgG~ 324 (324)
...+++.+.++|||||+
T Consensus 291 --~~~Fl~~~l~~Lk~gGr 307 (541)
T 2ar0_A 291 --QLCFMQHIIETLHPGGR 307 (541)
T ss_dssp --HHHHHHHHHHHEEEEEE
T ss_pred --HHHHHHHHHHHhCCCCE
Confidence 22688999999999984
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.48 E-value=1.6e-13 Score=121.70 Aligned_cols=116 Identities=14% Similarity=0.097 Sum_probs=86.1
Q ss_pred HHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccc
Q 020573 177 ELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSW 256 (324)
Q Consensus 177 e~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~ 256 (324)
..+...+...+ ......++.+|||+|||+|.+++.+++.+++.++|+|+|+|+.+++.+++|++.+ .+++++++|+
T Consensus 56 ~~~~~~i~~~l-~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~---~~v~~~~~d~ 131 (227)
T 1g8a_A 56 SKLGAAIMNGL-KNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER---RNIVPILGDA 131 (227)
T ss_dssp CHHHHHHHTTC-CCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC---TTEEEEECCT
T ss_pred hhHHHHHHhhH-HhcCCCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc---CCCEEEEccC
Confidence 34445554333 2222345679999999999999999998766689999999999999999998765 4699999999
Q ss_pred cccc--ccCCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 257 FGKL--KDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 257 ~~~l--~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
.+.. ....++||+|++|+|.. + ..+.++.++.++|||||+
T Consensus 132 ~~~~~~~~~~~~~D~v~~~~~~~----------~------------------~~~~~l~~~~~~LkpgG~ 173 (227)
T 1g8a_A 132 TKPEEYRALVPKVDVIFEDVAQP----------T------------------QAKILIDNAEVYLKRGGY 173 (227)
T ss_dssp TCGGGGTTTCCCEEEEEECCCST----------T------------------HHHHHHHHHHHHEEEEEE
T ss_pred CCcchhhcccCCceEEEECCCCH----------h------------------HHHHHHHHHHHhcCCCCE
Confidence 8732 22345899999998710 0 112357888899999984
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=99.48 E-value=8.6e-14 Score=136.12 Aligned_cols=119 Identities=16% Similarity=0.192 Sum_probs=93.6
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccccc-CCCCeeEEEEc
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKD-VEGKLSGVVSN 273 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~-~~~~fDlIVsN 273 (324)
++.+|||+|||+|..+..+++.. ++++|+|+|+++.+++.+++|++++|+. ++++++|+.+.... ..++||+|++|
T Consensus 246 ~g~~VLDlgaG~G~~t~~la~~~-~~~~v~a~D~~~~~l~~~~~~~~~~g~~--~~~~~~D~~~~~~~~~~~~fD~Vl~D 322 (429)
T 1sqg_A 246 NGEHILDLCAAPGGKTTHILEVA-PEAQVVAVDIDEQRLSRVYDNLKRLGMK--ATVKQGDGRYPSQWCGEQQFDRILLD 322 (429)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHC-TTCEEEEEESSTTTHHHHHHHHHHTTCC--CEEEECCTTCTHHHHTTCCEEEEEEE
T ss_pred CcCeEEEECCCchHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHHHHHcCCC--eEEEeCchhhchhhcccCCCCEEEEe
Confidence 46799999999999999999985 5689999999999999999999999973 79999998764321 12589999999
Q ss_pred CCCCCCCCcccchhhhhcccccccccCCCCcH----HHHHHHHHHHhcccCCCCC
Q 020573 274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGL----DYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 274 PPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl----~~~~~il~~a~~~LkpgG~ 324 (324)
|||...+.+ ++.|...+....+.+ .....+++.+.++|||||+
T Consensus 323 ~Pcsg~g~~--------~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~ 369 (429)
T 1sqg_A 323 APCSATGVI--------RRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGT 369 (429)
T ss_dssp CCCCCGGGT--------TTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEE
T ss_pred CCCCccccc--------CCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCE
Confidence 999865543 334444333333333 3347899999999999994
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=9.3e-14 Score=130.13 Aligned_cols=155 Identities=13% Similarity=0.100 Sum_probs=100.7
Q ss_pred cCCCceeEE-ecccccCeeeeeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEE
Q 020573 145 KRKPFQYLV-GCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSI 223 (324)
Q Consensus 145 ~~~pl~yi~-g~~~f~~l~~~v~~~vliPrp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V 223 (324)
...+.|+|. -...++|..+.++..+-....+ |.....++..+ .......+.+|||+|||+|.++..+++.. +..+|
T Consensus 46 ~~s~~q~i~v~~~~~~g~~L~ldg~~~~~~~d-e~~y~e~l~~~-~l~~~~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v 122 (304)
T 2o07_A 46 RRSRYQDILVFRSKTYGNVLVLDGVIQCTERD-EFSYQEMIANL-PLCSHPNPRKVLIIGGGDGGVLREVVKHP-SVESV 122 (304)
T ss_dssp EECSSSEEEEEEESSSCEEEEETTEEEEETTT-HHHHHHHHHHH-HHTTSSSCCEEEEEECTTSHHHHHHTTCT-TCCEE
T ss_pred EECCCcEEEEEEcCCCceEEEECCEEEeeccc-chHHHHHHHHH-HHhhCCCCCEEEEECCCchHHHHHHHHcC-CCCEE
Confidence 345777764 3344556666666422222222 22222222222 11112345799999999999999999874 67899
Q ss_pred EEEeCCHHHHHHHHHHHHH--cCC-CCcEEEEEcccccccccCCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccC
Q 020573 224 IAVDLNPLAAAVAAFNAQR--YGL-QDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDG 300 (324)
Q Consensus 224 ~gvDis~~al~~Ar~N~~~--~gl-~~rv~~~~gD~~~~l~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~g 300 (324)
+++|+|+.+++.|++|+.. .++ .++++++.+|..+.+....++||+|++|+|..... .+
T Consensus 123 ~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii~d~~~~~~~------~~------------ 184 (304)
T 2o07_A 123 VQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVIITDSSDPMGP------AE------------ 184 (304)
T ss_dssp EEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEEEECC-------------------------
T ss_pred EEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEEECCCCCCCc------ch------------
Confidence 9999999999999999876 344 46799999999775544457899999998752110 00
Q ss_pred CCCcHHHHHHHHHHHhcccCCCCC
Q 020573 301 GVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 301 g~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
-...+.+++.+.++|||||+
T Consensus 185 ----~l~~~~~l~~~~~~LkpgG~ 204 (304)
T 2o07_A 185 ----SLFKESYYQLMKTALKEDGV 204 (304)
T ss_dssp --------CHHHHHHHHHEEEEEE
T ss_pred ----hhhHHHHHHHHHhccCCCeE
Confidence 01123678888999999985
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.1e-13 Score=122.78 Aligned_cols=114 Identities=18% Similarity=0.186 Sum_probs=87.7
Q ss_pred cccCeeeeeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhC----CCcEEEEEeCCHHH
Q 020573 157 HWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLG----SKGSIIAVDLNPLA 232 (324)
Q Consensus 157 ~f~~l~~~v~~~vliPrp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~----p~~~V~gvDis~~a 232 (324)
.|++..+.+..+..+++|... ..+++.+ .. ...++.+|||+|||+|.++..+++..+ +..+|+|+|+++.+
T Consensus 47 ~y~d~~~~~~~~~~~~~p~~~---~~~~~~l-~~-~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~ 121 (227)
T 2pbf_A 47 PYIDTPVYISHGVTISAPHMH---ALSLKRL-IN-VLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDL 121 (227)
T ss_dssp TTSSSCEEEETTEEECCHHHH---HHHHHHH-TT-TSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHH
T ss_pred cCCCCccccCCCCccCChHHH---HHHHHHH-Hh-hCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHH
Confidence 566777888888888877543 3333433 10 123467999999999999999999864 56799999999999
Q ss_pred HHHHHHHHHHcCC----CCcEEEEEccccccc----ccCCCCeeEEEEcCCC
Q 020573 233 AAVAAFNAQRYGL----QDIIEIRQGSWFGKL----KDVEGKLSGVVSNPPY 276 (324)
Q Consensus 233 l~~Ar~N~~~~gl----~~rv~~~~gD~~~~l----~~~~~~fDlIVsNPPY 276 (324)
++.|++|++.+++ .++++++.+|+.+.. .. .++||+|+++.++
T Consensus 122 ~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~-~~~fD~I~~~~~~ 172 (227)
T 2pbf_A 122 VNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEKKE-LGLFDAIHVGASA 172 (227)
T ss_dssp HHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHHHH-HCCEEEEEECSBB
T ss_pred HHHHHHHHHHcCccccccCCEEEEECChHhcccccCcc-CCCcCEEEECCch
Confidence 9999999999874 346999999998753 22 3689999998664
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.47 E-value=3.6e-13 Score=118.64 Aligned_cols=97 Identities=16% Similarity=0.077 Sum_probs=79.9
Q ss_pred CCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcCC
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPP 275 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNPP 275 (324)
+.+|||+|||+|.++..+++.. + +|+|+|+|+.+++.|++|++.++ .+++++++|+.+. ....++||+|++|++
T Consensus 39 ~~~vLDlG~G~G~~~~~l~~~~-~--~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~d~~~~-~~~~~~~D~v~~~~~ 112 (227)
T 1ve3_A 39 RGKVLDLACGVGGFSFLLEDYG-F--EVVGVDISEDMIRKAREYAKSRE--SNVEFIVGDARKL-SFEDKTFDYVIFIDS 112 (227)
T ss_dssp CCEEEEETCTTSHHHHHHHHTT-C--EEEEEESCHHHHHHHHHHHHHTT--CCCEEEECCTTSC-CSCTTCEEEEEEESC
T ss_pred CCeEEEEeccCCHHHHHHHHcC-C--EEEEEECCHHHHHHHHHHHHhcC--CCceEEECchhcC-CCCCCcEEEEEEcCc
Confidence 6799999999999999999874 3 99999999999999999998887 4699999998873 222468999999988
Q ss_pred --CCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 276 --YIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 276 --Yi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
+.. ......+++++.++|||||+
T Consensus 113 ~~~~~--------------------------~~~~~~~l~~~~~~L~~gG~ 137 (227)
T 1ve3_A 113 IVHFE--------------------------PLELNQVFKEVRRVLKPSGK 137 (227)
T ss_dssp GGGCC--------------------------HHHHHHHHHHHHHHEEEEEE
T ss_pred hHhCC--------------------------HHHHHHHHHHHHHHcCCCcE
Confidence 321 12334788999999999984
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=2.4e-13 Score=126.77 Aligned_cols=101 Identities=19% Similarity=0.170 Sum_probs=84.1
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEc
Q 020573 194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN 273 (324)
Q Consensus 194 ~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsN 273 (324)
.++.+|||+|||+|.++..+++.+ +.+|+|+|+|+.+++.|++|++.+++.++++++++|+.+. +...++||+|+++
T Consensus 116 ~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~fD~V~~~ 192 (312)
T 3vc1_A 116 GPDDTLVDAGCGRGGSMVMAHRRF--GSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDT-PFDKGAVTASWNN 192 (312)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSC-CCCTTCEEEEEEE
T ss_pred CCCCEEEEecCCCCHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcC-CCCCCCEeEEEEC
Confidence 456799999999999999999985 4799999999999999999999999988899999999863 2234799999995
Q ss_pred CCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 274 PPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
- +..|-+ ...+++++.++|||||+
T Consensus 193 ~--------------~l~~~~-------------~~~~l~~~~~~LkpgG~ 216 (312)
T 3vc1_A 193 E--------------STMYVD-------------LHDLFSEHSRFLKVGGR 216 (312)
T ss_dssp S--------------CGGGSC-------------HHHHHHHHHHHEEEEEE
T ss_pred C--------------chhhCC-------------HHHHHHHHHHHcCCCcE
Confidence 2 212211 45789999999999994
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.6e-13 Score=132.03 Aligned_cols=122 Identities=22% Similarity=0.210 Sum_probs=92.9
Q ss_pred ccccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcE
Q 020573 170 FIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDII 249 (324)
Q Consensus 170 liPrp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv 249 (324)
+..+..++.+.+.+.... ...++.+|||+|||+|.+++.+++. ...+|+|+|+| .+++.|++|++.+++.+++
T Consensus 42 l~d~~r~~~~~~~i~~~~----~~~~~~~VLDlGcGtG~ls~~la~~--g~~~V~gvD~s-~~~~~a~~~~~~~~~~~~v 114 (376)
T 3r0q_C 42 LSDRVRMDAYFNAVFQNK----HHFEGKTVLDVGTGSGILAIWSAQA--GARKVYAVEAT-KMADHARALVKANNLDHIV 114 (376)
T ss_dssp HTCHHHHHHHHHHHHTTT----TTTTTCEEEEESCTTTHHHHHHHHT--TCSEEEEEESS-TTHHHHHHHHHHTTCTTTE
T ss_pred hcChHHHHHHHHHHHhcc----ccCCCCEEEEeccCcCHHHHHHHhc--CCCEEEEEccH-HHHHHHHHHHHHcCCCCeE
Confidence 333445555666555433 3345789999999999999999996 34599999999 9999999999999999999
Q ss_pred EEEEcccccccccCCCCeeEEEEcC-CCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 250 EIRQGSWFGKLKDVEGKLSGVVSNP-PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 250 ~~~~gD~~~~l~~~~~~fDlIVsNP-PYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
+++++|+.+... .++||+|++|+ +|... ++. .+..++..+.++|||||+
T Consensus 115 ~~~~~d~~~~~~--~~~~D~Iv~~~~~~~l~------------~e~------------~~~~~l~~~~~~LkpgG~ 164 (376)
T 3r0q_C 115 EVIEGSVEDISL--PEKVDVIISEWMGYFLL------------RES------------MFDSVISARDRWLKPTGV 164 (376)
T ss_dssp EEEESCGGGCCC--SSCEEEEEECCCBTTBT------------TTC------------THHHHHHHHHHHEEEEEE
T ss_pred EEEECchhhcCc--CCcceEEEEcChhhccc------------chH------------HHHHHHHHHHhhCCCCeE
Confidence 999999977432 27899999987 44321 111 133678888899999995
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=99.47 E-value=9e-14 Score=124.63 Aligned_cols=116 Identities=21% Similarity=0.274 Sum_probs=91.1
Q ss_pred cchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEE
Q 020573 173 RPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIR 252 (324)
Q Consensus 173 rp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~ 252 (324)
.+.+..++..+.... ++.+|||+|||+|..++.+++.++++++|+++|+++++++.|++|++.+++.++++++
T Consensus 57 ~~~~~~~l~~l~~~~-------~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~ 129 (232)
T 3cbg_A 57 SPEQAQFLGLLISLT-------GAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLR 129 (232)
T ss_dssp CHHHHHHHHHHHHHH-------TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEE
T ss_pred CHHHHHHHHHHHHhc-------CCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEE
Confidence 455556666555443 3569999999999999999998744789999999999999999999999998889999
Q ss_pred EcccccccccC---C--CCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 253 QGSWFGKLKDV---E--GKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 253 ~gD~~~~l~~~---~--~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
.+|+.+.+..+ . ++||+|+++.+. ..+..+++.+.++|+|||+
T Consensus 130 ~~d~~~~l~~l~~~~~~~~fD~V~~d~~~-----------------------------~~~~~~l~~~~~~LkpgG~ 177 (232)
T 3cbg_A 130 LGPALATLEQLTQGKPLPEFDLIFIDADK-----------------------------RNYPRYYEIGLNLLRRGGL 177 (232)
T ss_dssp ESCHHHHHHHHHTSSSCCCEEEEEECSCG-----------------------------GGHHHHHHHHHHTEEEEEE
T ss_pred EcCHHHHHHHHHhcCCCCCcCEEEECCCH-----------------------------HHHHHHHHHHHHHcCCCeE
Confidence 99987643321 1 689999997431 1133578888999999984
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.47 E-value=1.8e-13 Score=128.38 Aligned_cols=107 Identities=17% Similarity=0.249 Sum_probs=83.0
Q ss_pred eeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHc
Q 020573 164 SVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRY 243 (324)
Q Consensus 164 ~v~~~vliPrp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~ 243 (324)
.+..+.|........+++.+.+.+ ...++.+|||+|||+|.+++.+++..+.+.+|+|+|+|+++++.|++|++.+
T Consensus 48 ~l~~~~f~q~~~~~~~~~~l~~~l----~~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~ 123 (317)
T 1dl5_A 48 SYDDGEEYSTSSQPSLMALFMEWV----GLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERL 123 (317)
T ss_dssp EEECSSCEEEECCHHHHHHHHHHT----TCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHT
T ss_pred cccCCCcceeccCHHHHHHHHHhc----CCCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHc
Confidence 455554444433345566666555 2335679999999999999999998633578999999999999999999999
Q ss_pred CCCCcEEEEEcccccccccCCCCeeEEEEcCCC
Q 020573 244 GLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPY 276 (324)
Q Consensus 244 gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNPPY 276 (324)
++.+ +++..+|+.+.... .++||+|+++++.
T Consensus 124 g~~~-v~~~~~d~~~~~~~-~~~fD~Iv~~~~~ 154 (317)
T 1dl5_A 124 GIEN-VIFVCGDGYYGVPE-FSPYDVIFVTVGV 154 (317)
T ss_dssp TCCS-EEEEESCGGGCCGG-GCCEEEEEECSBB
T ss_pred CCCC-eEEEECChhhcccc-CCCeEEEEEcCCH
Confidence 9876 99999999875432 3689999998775
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.46 E-value=2.4e-13 Score=121.38 Aligned_cols=100 Identities=12% Similarity=0.058 Sum_probs=80.0
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccc--ccCCCCeeEEE
Q 020573 194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKL--KDVEGKLSGVV 271 (324)
Q Consensus 194 ~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l--~~~~~~fDlIV 271 (324)
.++.+|||+|||+|.++..+++.+++..+|+|+|+|+.+++.+.++++.+ .+++++++|+.+.. +...++||+|+
T Consensus 76 ~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~---~~v~~~~~d~~~~~~~~~~~~~~D~V~ 152 (233)
T 2ipx_A 76 KPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR---TNIIPVIEDARHPHKYRMLIAMVDVIF 152 (233)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC---TTEEEECSCTTCGGGGGGGCCCEEEEE
T ss_pred CCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc---CCeEEEEcccCChhhhcccCCcEEEEE
Confidence 35679999999999999999998766789999999999999999988876 45999999998742 22346899999
Q ss_pred EcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 272 SNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 272 sNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
+|+|.. +..+.++.++.++|||||+
T Consensus 153 ~~~~~~----------------------------~~~~~~~~~~~~~LkpgG~ 177 (233)
T 2ipx_A 153 ADVAQP----------------------------DQTRIVALNAHTFLRNGGH 177 (233)
T ss_dssp ECCCCT----------------------------THHHHHHHHHHHHEEEEEE
T ss_pred EcCCCc----------------------------cHHHHHHHHHHHHcCCCeE
Confidence 998710 0122467778889999884
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.46 E-value=2.7e-13 Score=119.09 Aligned_cols=102 Identities=17% Similarity=0.202 Sum_probs=83.6
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNP 274 (324)
++.+|||+|||+|.++..+++..++..+|+|+|+|+.+++.|++++...++. +++++++|+.+. ....++||+|+++-
T Consensus 37 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~-~~~~~~fD~v~~~~ 114 (219)
T 3dh0_A 37 EGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLK-NVEVLKSEENKI-PLPDNTVDFIFMAF 114 (219)
T ss_dssp TTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCT-TEEEEECBTTBC-SSCSSCEEEEEEES
T ss_pred CCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEecccccC-CCCCCCeeEEEeeh
Confidence 4679999999999999999998657789999999999999999999999886 599999999763 22346899999973
Q ss_pred CCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 275 PYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
.+ .|-+ ....+++++.++|||||+
T Consensus 115 ~l--------------~~~~------------~~~~~l~~~~~~LkpgG~ 138 (219)
T 3dh0_A 115 TF--------------HELS------------EPLKFLEELKRVAKPFAY 138 (219)
T ss_dssp CG--------------GGCS------------SHHHHHHHHHHHEEEEEE
T ss_pred hh--------------hhcC------------CHHHHHHHHHHHhCCCeE
Confidence 32 2211 124688999999999984
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.46 E-value=6.5e-14 Score=131.84 Aligned_cols=149 Identities=15% Similarity=0.149 Sum_probs=101.9
Q ss_pred CCCceeEEecc-cccCeeeeeeCCcccccch----HHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCC
Q 020573 146 RKPFQYLVGCE-HWRDLVLSVEEGVFIPRPE----TELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSK 220 (324)
Q Consensus 146 ~~pl~yi~g~~-~f~~l~~~v~~~vliPrp~----te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~ 220 (324)
.-|.|+|.-.. ..+|..+.++..+.+++++ +|.++...+... ..+.+|||+|||+|.++..+++.. +.
T Consensus 60 ~s~~q~i~v~~~~~~g~~l~ldg~~q~~~~de~~Y~e~l~~l~l~~~------~~~~~VLdIG~G~G~~~~~l~~~~-~~ 132 (314)
T 2b2c_A 60 KSKYQDVLVFESTTYGNVLVLDGIVQATERDEFSYQEMLAHLPMFAH------PDPKRVLIIGGGDGGILREVLKHE-SV 132 (314)
T ss_dssp ECSSCEEEEEEETTTEEEEEETTEEEEESSSSSHHHHHHHHHHHHHS------SSCCEEEEESCTTSHHHHHHTTCT-TC
T ss_pred ECCCCCEEEEEcCCCCEEEEECCEeecCCcchhHHHHHHHHHHHhhC------CCCCEEEEEcCCcCHHHHHHHHcC-CC
Confidence 35666664422 2346677777766666654 454444322211 235699999999999999999874 67
Q ss_pred cEEEEEeCCHHHHHHHHHHHHHc--CC-CCcEEEEEcccccccccCCCCeeEEEEcCCCCCCCCcccchhhhhccccccc
Q 020573 221 GSIIAVDLNPLAAAVAAFNAQRY--GL-QDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLA 297 (324)
Q Consensus 221 ~~V~gvDis~~al~~Ar~N~~~~--gl-~~rv~~~~gD~~~~l~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~a 297 (324)
.+|+++|+|+.+++.|++|+... ++ .++++++.+|+.+.+....++||+|++|++..- .|.
T Consensus 133 ~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~d~~~~~--------------~~~-- 196 (314)
T 2b2c_A 133 EKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVIITDSSDPV--------------GPA-- 196 (314)
T ss_dssp CEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEEECCC----------------------
T ss_pred CEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEEEcCCCCC--------------Ccc--
Confidence 89999999999999999998654 44 467999999998755434568999999975210 010
Q ss_pred ccCCCCcHHHH-HHHHHHHhcccCCCCC
Q 020573 298 LDGGVDGLDYL-LHLCNGTASMLKPDKW 324 (324)
Q Consensus 298 L~gg~dGl~~~-~~il~~a~~~LkpgG~ 324 (324)
-..+ ..+++.+.++|+|||+
T Consensus 197 -------~~l~t~~~l~~~~~~LkpgG~ 217 (314)
T 2b2c_A 197 -------ESLFGQSYYELLRDALKEDGI 217 (314)
T ss_dssp --------------HHHHHHHHEEEEEE
T ss_pred -------hhhhHHHHHHHHHhhcCCCeE
Confidence 0112 4788899999999985
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.2e-13 Score=128.11 Aligned_cols=109 Identities=17% Similarity=0.183 Sum_probs=80.4
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCC----------------------------
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQ---------------------------- 246 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~---------------------------- 246 (324)
.+.+|||+|||+|.+++.+++.+ +..+|+|+|+|+.+++.|++|++..+..
T Consensus 46 ~~~~VLDiGCG~G~~~~~la~~~-~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (292)
T 3g07_A 46 RGRDVLDLGCNVGHLTLSIACKW-GPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRS 124 (292)
T ss_dssp TTSEEEEESCTTCHHHHHHHHHT-CCSEEEEEESCHHHHHHHHHTC----------------------------------
T ss_pred CCCcEEEeCCCCCHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccccc
Confidence 46799999999999999999997 6689999999999999999998765532
Q ss_pred -----------------------------CcEEEEEccccccc----ccCCCCeeEEEEcCCCCCCCCcccchhhhhccc
Q 020573 247 -----------------------------DIIEIRQGSWFGKL----KDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHE 293 (324)
Q Consensus 247 -----------------------------~rv~~~~gD~~~~l----~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~e 293 (324)
++++|+++|+.+.. ....++||+|+++- +..|-
T Consensus 125 ~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~--------------vl~~i 190 (292)
T 3g07_A 125 CFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLS--------------LTKWV 190 (292)
T ss_dssp -----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEES--------------CHHHH
T ss_pred cccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEECh--------------HHHHh
Confidence 57999999998643 11247899999952 11110
Q ss_pred ccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 294 PRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 294 P~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
. | ..+-+.+..+++++.++|||||+
T Consensus 191 h---l---~~~~~~~~~~l~~~~~~LkpGG~ 215 (292)
T 3g07_A 191 H---L---NWGDEGLKRMFRRIYRHLRPGGI 215 (292)
T ss_dssp H---H---HHHHHHHHHHHHHHHHHEEEEEE
T ss_pred h---h---cCCHHHHHHHHHHHHHHhCCCcE
Confidence 0 0 00123567899999999999995
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=2.5e-13 Score=128.93 Aligned_cols=103 Identities=18% Similarity=0.175 Sum_probs=83.0
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEc
Q 020573 194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN 273 (324)
Q Consensus 194 ~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsN 273 (324)
.++.+|||+|||+|.+++.+++. +..+|+|+|+|+ +++.|++|++.+++.++++++++|+.+. ....++||+|++|
T Consensus 63 ~~~~~VLDiGcGtG~ls~~la~~--g~~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~~D~Ivs~ 138 (340)
T 2fyt_A 63 FKDKVVLDVGCGTGILSMFAAKA--GAKKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIEEV-HLPVEKVDVIISE 138 (340)
T ss_dssp TTTCEEEEETCTTSHHHHHHHHT--TCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTS-CCSCSCEEEEEEC
T ss_pred cCCCEEEEeeccCcHHHHHHHHc--CCCEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHHh-cCCCCcEEEEEEc
Confidence 35679999999999999999986 346999999996 9999999999999978899999999863 2223689999999
Q ss_pred C-CCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 274 P-PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 274 P-PYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
+ +|.- .++ ..+..++..+.++|||||+
T Consensus 139 ~~~~~l------------~~~------------~~~~~~l~~~~~~LkpgG~ 166 (340)
T 2fyt_A 139 WMGYFL------------LFE------------SMLDSVLYAKNKYLAKGGS 166 (340)
T ss_dssp CCBTTB------------TTT------------CHHHHHHHHHHHHEEEEEE
T ss_pred Cchhhc------------cCH------------HHHHHHHHHHHhhcCCCcE
Confidence 7 5541 111 1234678888999999984
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=2.1e-13 Score=129.95 Aligned_cols=103 Identities=17% Similarity=0.170 Sum_probs=83.0
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNP 274 (324)
++.+|||+|||+|.+++.+++. +..+|+|+|+| .+++.|++|++.+++.++++++++|+.+. ....++||+|++|+
T Consensus 66 ~~~~VLDvGcG~G~~~~~la~~--g~~~v~gvD~s-~~l~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~fD~Iis~~ 141 (349)
T 3q7e_A 66 KDKVVLDVGSGTGILCMFAAKA--GARKVIGIECS-SISDYAVKIVKANKLDHVVTIIKGKVEEV-ELPVEKVDIIISEW 141 (349)
T ss_dssp TTCEEEEESCTTSHHHHHHHHT--TCSEEEEEECS-THHHHHHHHHHHTTCTTTEEEEESCTTTC-CCSSSCEEEEEECC
T ss_pred CCCEEEEEeccchHHHHHHHHC--CCCEEEEECcH-HHHHHHHHHHHHcCCCCcEEEEECcHHHc-cCCCCceEEEEEcc
Confidence 4679999999999999999996 45799999999 59999999999999998999999999874 22247999999987
Q ss_pred CCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 275 PYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
.... ..+++ .+..++..+.++|||||+
T Consensus 142 ~~~~-----------l~~~~------------~~~~~l~~~~r~LkpgG~ 168 (349)
T 3q7e_A 142 MGYC-----------LFYES------------MLNTVLHARDKWLAPDGL 168 (349)
T ss_dssp CBBT-----------BTBTC------------CHHHHHHHHHHHEEEEEE
T ss_pred cccc-----------ccCch------------hHHHHHHHHHHhCCCCCE
Confidence 5321 01111 233678888999999995
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.45 E-value=4.5e-13 Score=124.00 Aligned_cols=102 Identities=16% Similarity=0.097 Sum_probs=82.2
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHc-CCCCcEEEEEcccccccccCC------CCe
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRY-GLQDIIEIRQGSWFGKLKDVE------GKL 267 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~-gl~~rv~~~~gD~~~~l~~~~------~~f 267 (324)
++.+|||+|||+|.++..+++.+.+..+|+|+|+|+.+++.|+++++.. +...+++++++|+.+.. ... ++|
T Consensus 36 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~~~~~~~f 114 (299)
T 3g5t_A 36 ERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFK-FLGADSVDKQKI 114 (299)
T ss_dssp CCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCG-GGCTTTTTSSCE
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCC-ccccccccCCCe
Confidence 4679999999999999999987546789999999999999999999987 55567999999998732 223 689
Q ss_pred eEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 268 SGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 268 DlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
|+|+++-.. .|- ....+++++.++|||||+
T Consensus 115 D~V~~~~~l--------------~~~-------------~~~~~l~~~~~~LkpgG~ 144 (299)
T 3g5t_A 115 DMITAVECA--------------HWF-------------DFEKFQRSAYANLRKDGT 144 (299)
T ss_dssp EEEEEESCG--------------GGS-------------CHHHHHHHHHHHEEEEEE
T ss_pred eEEeHhhHH--------------HHh-------------CHHHHHHHHHHhcCCCcE
Confidence 999996322 221 134788999999999994
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=6.2e-13 Score=121.94 Aligned_cols=102 Identities=13% Similarity=0.059 Sum_probs=82.6
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEE
Q 020573 193 GLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVS 272 (324)
Q Consensus 193 ~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVs 272 (324)
..++.+|||+|||+|.++..+++.. +.+|+|+|+|+.+++.|++++...++.++++++.+|+.+ ++ ++||+|++
T Consensus 62 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~---~~fD~v~~ 135 (287)
T 1kpg_A 62 LQPGMTLLDVGCGWGATMMRAVEKY--DVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQ-FD---EPVDRIVS 135 (287)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGG-CC---CCCSEEEE
T ss_pred CCCcCEEEEECCcccHHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhh-CC---CCeeEEEE
Confidence 3456799999999999999999776 359999999999999999999998888789999999865 32 68999999
Q ss_pred cCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 273 NPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 273 NPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
+-. ..|-+. +....+++++.++|||||+
T Consensus 136 ~~~--------------l~~~~~----------~~~~~~l~~~~~~LkpgG~ 163 (287)
T 1kpg_A 136 IGA--------------FEHFGH----------ERYDAFFSLAHRLLPADGV 163 (287)
T ss_dssp ESC--------------GGGTCT----------TTHHHHHHHHHHHSCTTCE
T ss_pred eCc--------------hhhcCh----------HHHHHHHHHHHHhcCCCCE
Confidence 522 222211 2245788999999999995
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=1.7e-13 Score=132.59 Aligned_cols=79 Identities=18% Similarity=-0.021 Sum_probs=69.8
Q ss_pred CCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCc-EEEEEcccccccc-cCCCCeeEEEEc
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDI-IEIRQGSWFGKLK-DVEGKLSGVVSN 273 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~r-v~~~~gD~~~~l~-~~~~~fDlIVsN 273 (324)
+.+|||+|||+|.+++.++++.+...+|+++|+++.+++.+++|++.+++.++ ++++++|.++.+. ...++||+|+.|
T Consensus 53 g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~lD 132 (392)
T 3axs_A 53 PVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVDLD 132 (392)
T ss_dssp CEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEEEC
T ss_pred CCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEEEC
Confidence 56899999999999999999752226899999999999999999999999887 9999999987665 444689999999
Q ss_pred C
Q 020573 274 P 274 (324)
Q Consensus 274 P 274 (324)
|
T Consensus 133 P 133 (392)
T 3axs_A 133 P 133 (392)
T ss_dssp C
T ss_pred C
Confidence 8
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.44 E-value=2.6e-13 Score=121.73 Aligned_cols=100 Identities=19% Similarity=0.212 Sum_probs=81.9
Q ss_pred CCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccC------------
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDV------------ 263 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~------------ 263 (324)
+.+|||+|||+|..++.+++.+++..+|+++|+++.+++.|++|++.+++.++++++.+|..+.++..
T Consensus 61 ~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~ 140 (239)
T 2hnk_A 61 AKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWASD 140 (239)
T ss_dssp CSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGGTT
T ss_pred cCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhccccccccc
Confidence 56999999999999999999874478999999999999999999999998888999999987643321
Q ss_pred ---C-CCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 264 ---E-GKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 264 ---~-~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
. ++||+|+++.. ...+..+++.+.+.|||||+
T Consensus 141 f~~~~~~fD~I~~~~~-----------------------------~~~~~~~l~~~~~~L~pgG~ 176 (239)
T 2hnk_A 141 FAFGPSSIDLFFLDAD-----------------------------KENYPNYYPLILKLLKPGGL 176 (239)
T ss_dssp TCCSTTCEEEEEECSC-----------------------------GGGHHHHHHHHHHHEEEEEE
T ss_pred ccCCCCCcCEEEEeCC-----------------------------HHHHHHHHHHHHHHcCCCeE
Confidence 1 68999999621 01123578888899999984
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.44 E-value=6.8e-13 Score=115.78 Aligned_cols=78 Identities=21% Similarity=0.310 Sum_probs=68.3
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNP 274 (324)
++.+|||+|||+|.+++.+++. ...+|+|+|+|+.+++.|++|++.+++ +++++++|+.+. + ++||+|++||
T Consensus 49 ~~~~vlD~g~G~G~~~~~l~~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~-~---~~~D~v~~~~ 120 (207)
T 1wy7_A 49 EGKVVADLGAGTGVLSYGALLL--GAKEVICVEVDKEAVDVLIENLGEFKG--KFKVFIGDVSEF-N---SRVDIVIMNP 120 (207)
T ss_dssp TTCEEEEETCTTCHHHHHHHHT--TCSEEEEEESCHHHHHHHHHHTGGGTT--SEEEEESCGGGC-C---CCCSEEEECC
T ss_pred CcCEEEEeeCCCCHHHHHHHHc--CCCEEEEEECCHHHHHHHHHHHHHcCC--CEEEEECchHHc-C---CCCCEEEEcC
Confidence 4679999999999999999986 235899999999999999999998887 599999999873 2 4899999999
Q ss_pred CCCCCC
Q 020573 275 PYIPSD 280 (324)
Q Consensus 275 PYi~~~ 280 (324)
||....
T Consensus 121 p~~~~~ 126 (207)
T 1wy7_A 121 PFGSQR 126 (207)
T ss_dssp CCSSSS
T ss_pred CCcccc
Confidence 997543
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=4.3e-13 Score=138.83 Aligned_cols=101 Identities=21% Similarity=0.196 Sum_probs=81.7
Q ss_pred cchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHh-----------------------------------
Q 020573 173 RPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVL----------------------------------- 217 (324)
Q Consensus 173 rp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~----------------------------------- 217 (324)
.|..|.+...++... ....+..++|++||||.+++.+|...
T Consensus 172 apl~e~LAa~ll~~~----~~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~ 247 (703)
T 3v97_A 172 APIKETLAAAIVMRS----GWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTR 247 (703)
T ss_dssp CSSCHHHHHHHHHHT----TCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHhh----CCCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHH
Confidence 466777888777655 22345689999999999999988752
Q ss_pred ------CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccC-CCCeeEEEEcCCCC
Q 020573 218 ------GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDV-EGKLSGVVSNPPYI 277 (324)
Q Consensus 218 ------~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~-~~~fDlIVsNPPYi 277 (324)
.+..+|+|+|+++.|++.|++|++.+|+.+.++|.++|+.+..... .++||+||+||||.
T Consensus 248 ~~~~~~~~~~~i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG 314 (703)
T 3v97_A 248 ARKGLAEYSSHFYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYG 314 (703)
T ss_dssp HHHHHHHCCCCEEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCC
T ss_pred hhhccccCCccEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCCcc
Confidence 0225899999999999999999999999988999999998743322 23899999999995
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.44 E-value=4.8e-13 Score=120.97 Aligned_cols=118 Identities=18% Similarity=0.172 Sum_probs=85.9
Q ss_pred CcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCC
Q 020573 168 GVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQD 247 (324)
Q Consensus 168 ~vliPrp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~ 247 (324)
.+..+..+.+.+++.+. ..++.+|||+|||+|.++..+++.. .+|+|+|+|+.+++.|+++++..++.
T Consensus 18 ~~~~~~~~~~~l~~~l~--------~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~l~~a~~~~~~~~~~- 85 (260)
T 1vl5_A 18 QIHAKGSDLAKLMQIAA--------LKGNEEVLDVATGGGHVANAFAPFV---KKVVAFDLTEDILKVARAFIEGNGHQ- 85 (260)
T ss_dssp -----CCCHHHHHHHHT--------CCSCCEEEEETCTTCHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHTTCC-
T ss_pred ccccCHHHHHHHHHHhC--------CCCCCEEEEEeCCCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHhcCCC-
Confidence 34445555555555432 2246799999999999999999874 49999999999999999999998876
Q ss_pred cEEEEEcccccccccCCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 248 IIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 248 rv~~~~gD~~~~l~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
++.++++|+.+ ++...++||+|+++-. ..|-+. ...+++++.++|||||+
T Consensus 86 ~v~~~~~d~~~-l~~~~~~fD~V~~~~~--------------l~~~~d------------~~~~l~~~~r~LkpgG~ 135 (260)
T 1vl5_A 86 QVEYVQGDAEQ-MPFTDERFHIVTCRIA--------------AHHFPN------------PASFVSEAYRVLKKGGQ 135 (260)
T ss_dssp SEEEEECCC-C-CCSCTTCEEEEEEESC--------------GGGCSC------------HHHHHHHHHHHEEEEEE
T ss_pred ceEEEEecHHh-CCCCCCCEEEEEEhhh--------------hHhcCC------------HHHHHHHHHHHcCCCCE
Confidence 59999999876 3333478999999622 223221 23678899999999984
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.43 E-value=6.1e-13 Score=119.72 Aligned_cols=79 Identities=24% Similarity=0.326 Sum_probs=69.3
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHc-CCCCcEEEEEcccccc-cccCCCCeeEEE
Q 020573 194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRY-GLQDIIEIRQGSWFGK-LKDVEGKLSGVV 271 (324)
Q Consensus 194 ~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~-gl~~rv~~~~gD~~~~-l~~~~~~fDlIV 271 (324)
.++.+|||+|||+|.+++.+++.+++..+|+++|+++.+++.|++|++.+ | .+++++.++|+.+. +. .++||+|+
T Consensus 95 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g-~~~v~~~~~d~~~~~~~--~~~~D~v~ 171 (258)
T 2pwy_A 95 APGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQ-VENVRFHLGKLEEAELE--EAAYDGVA 171 (258)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC-CCCEEEEESCGGGCCCC--TTCEEEEE
T ss_pred CCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcC-CCCEEEEECchhhcCCC--CCCcCEEE
Confidence 45679999999999999999998667789999999999999999999988 8 45699999999875 33 36899999
Q ss_pred EcCC
Q 020573 272 SNPP 275 (324)
Q Consensus 272 sNPP 275 (324)
+|+|
T Consensus 172 ~~~~ 175 (258)
T 2pwy_A 172 LDLM 175 (258)
T ss_dssp EESS
T ss_pred ECCc
Confidence 9876
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=99.42 E-value=5.6e-13 Score=125.82 Aligned_cols=103 Identities=17% Similarity=0.138 Sum_probs=81.6
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNP 274 (324)
++.+|||+|||+|.+++.+++. +..+|+|+|+| .+++.|++|++.+++.++++++++|+.+. ....++||+|++++
T Consensus 38 ~~~~VLDiGcGtG~ls~~la~~--g~~~v~~vD~s-~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~~D~Ivs~~ 113 (328)
T 1g6q_1 38 KDKIVLDVGCGTGILSMFAAKH--GAKHVIGVDMS-SIIEMAKELVELNGFSDKITLLRGKLEDV-HLPFPKVDIIISEW 113 (328)
T ss_dssp TTCEEEEETCTTSHHHHHHHHT--CCSEEEEEESS-THHHHHHHHHHHTTCTTTEEEEESCTTTS-CCSSSCEEEEEECC
T ss_pred CCCEEEEecCccHHHHHHHHHC--CCCEEEEEChH-HHHHHHHHHHHHcCCCCCEEEEECchhhc-cCCCCcccEEEEeC
Confidence 4569999999999999999986 44699999999 69999999999999988999999998774 22236899999998
Q ss_pred CCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 275 PYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
+...- .++. .+..++..+.++|||||+
T Consensus 114 ~~~~l-----------~~~~------------~~~~~l~~~~~~LkpgG~ 140 (328)
T 1g6q_1 114 MGYFL-----------LYES------------MMDTVLYARDHYLVEGGL 140 (328)
T ss_dssp CBTTB-----------STTC------------CHHHHHHHHHHHEEEEEE
T ss_pred chhhc-----------ccHH------------HHHHHHHHHHhhcCCCeE
Confidence 73210 1111 123577888899999984
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.42 E-value=6.2e-13 Score=121.93 Aligned_cols=100 Identities=18% Similarity=0.144 Sum_probs=81.9
Q ss_pred CCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcCC
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPP 275 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNPP 275 (324)
+.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|+++++..++.++++++++|+.+......++||+|+++-.
T Consensus 69 ~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~ 145 (285)
T 4htf_A 69 KLRVLDAGGGEGQTAIKMAER---GHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLETPVDLILFHAV 145 (285)
T ss_dssp CCEEEEETCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSSCEEEEEEESC
T ss_pred CCEEEEeCCcchHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCCCceEEEECch
Confidence 569999999999999999986 47999999999999999999999998778999999998754334579999999632
Q ss_pred CCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 276 YIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 276 Yi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
+ .|-+. ...+++++.++|||||+
T Consensus 146 l--------------~~~~~------------~~~~l~~~~~~LkpgG~ 168 (285)
T 4htf_A 146 L--------------EWVAD------------PRSVLQTLWSVLRPGGV 168 (285)
T ss_dssp G--------------GGCSC------------HHHHHHHHHHTEEEEEE
T ss_pred h--------------hcccC------------HHHHHHHHHHHcCCCeE
Confidence 2 23221 23688999999999995
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=4.1e-13 Score=120.92 Aligned_cols=115 Identities=14% Similarity=0.057 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcc
Q 020573 176 TELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGS 255 (324)
Q Consensus 176 te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD 255 (324)
....++.+++.+ ...++.+|||+|||+|.++..+++.+ +.+|+|+|+|+.+++.|++++... .+++++++|
T Consensus 40 ~~~~~~~~~~~~----~~~~~~~vLdiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d 110 (266)
T 3ujc_A 40 GLEATKKILSDI----ELNENSKVLDIGSGLGGGCMYINEKY--GAHTHGIDICSNIVNMANERVSGN---NKIIFEAND 110 (266)
T ss_dssp HHHHHHHHTTTC----CCCTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHTCCSC---TTEEEEECC
T ss_pred hHHHHHHHHHhc----CCCCCCEEEEECCCCCHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhhcC---CCeEEEECc
Confidence 334455555444 33456799999999999999999986 579999999999999999887654 469999999
Q ss_pred cccccccCCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 256 WFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 256 ~~~~l~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
+.+. +...++||+|+++-. ..|-+ ......+++++.++|||||+
T Consensus 111 ~~~~-~~~~~~fD~v~~~~~--------------l~~~~----------~~~~~~~l~~~~~~L~pgG~ 154 (266)
T 3ujc_A 111 ILTK-EFPENNFDLIYSRDA--------------ILALS----------LENKNKLFQKCYKWLKPTGT 154 (266)
T ss_dssp TTTC-CCCTTCEEEEEEESC--------------GGGSC----------HHHHHHHHHHHHHHEEEEEE
T ss_pred cccC-CCCCCcEEEEeHHHH--------------HHhcC----------hHHHHHHHHHHHHHcCCCCE
Confidence 9873 323579999999622 12211 14556889999999999994
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.42 E-value=5.2e-13 Score=116.80 Aligned_cols=99 Identities=17% Similarity=0.253 Sum_probs=76.7
Q ss_pred eeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcC
Q 020573 165 VEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYG 244 (324)
Q Consensus 165 v~~~vliPrp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~g 244 (324)
...+.++..+ .++..+.+.+ ...++.+|||+|||+|.++..+++. ..+|+|+|+|+.+++.|++|++.++
T Consensus 54 ~~~~~~~~~~---~~~~~~~~~l----~~~~~~~vLdiG~G~G~~~~~la~~---~~~v~~vD~~~~~~~~a~~~~~~~~ 123 (210)
T 3lbf_A 54 IGQGQTISQP---YMVARMTELL----ELTPQSRVLEIGTGSGYQTAILAHL---VQHVCSVERIKGLQWQARRRLKNLD 123 (210)
T ss_dssp CTTSCEECCH---HHHHHHHHHT----TCCTTCEEEEECCTTSHHHHHHHHH---SSEEEEEESCHHHHHHHHHHHHHTT
T ss_pred cCCCCEeCCH---HHHHHHHHhc----CCCCCCEEEEEcCCCCHHHHHHHHh---CCEEEEEecCHHHHHHHHHHHHHcC
Confidence 3334444333 3444445444 2345679999999999999999997 3799999999999999999999999
Q ss_pred CCCcEEEEEcccccccccCCCCeeEEEEcCC
Q 020573 245 LQDIIEIRQGSWFGKLKDVEGKLSGVVSNPP 275 (324)
Q Consensus 245 l~~rv~~~~gD~~~~l~~~~~~fDlIVsNPP 275 (324)
+. +++++++|+.+.... .++||+|++|..
T Consensus 124 ~~-~v~~~~~d~~~~~~~-~~~~D~i~~~~~ 152 (210)
T 3lbf_A 124 LH-NVSTRHGDGWQGWQA-RAPFDAIIVTAA 152 (210)
T ss_dssp CC-SEEEEESCGGGCCGG-GCCEEEEEESSB
T ss_pred CC-ceEEEECCcccCCcc-CCCccEEEEccc
Confidence 87 599999999885543 468999999743
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.42 E-value=2.6e-13 Score=125.17 Aligned_cols=107 Identities=15% Similarity=0.118 Sum_probs=82.5
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHc--CC-CCcEEEEEcccccccccCCCCeeEEE
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRY--GL-QDIIEIRQGSWFGKLKDVEGKLSGVV 271 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~--gl-~~rv~~~~gD~~~~l~~~~~~fDlIV 271 (324)
.+.+|||+|||+|.++..+++.. +..+|+++|+++.+++.|++|+... ++ .++++++.+|..+.+....++||+|+
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii 153 (275)
T 1iy9_A 75 NPEHVLVVGGGDGGVIREILKHP-SVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM 153 (275)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCT-TCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred CCCEEEEECCchHHHHHHHHhCC-CCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEE
Confidence 45799999999999999999863 5689999999999999999998652 34 35799999999876554457899999
Q ss_pred EcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 272 SNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 272 sNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
+|+|+.... .. .|. .+.+++.+.++|||||+
T Consensus 154 ~d~~~~~~~-~~-------------~l~--------~~~~~~~~~~~L~pgG~ 184 (275)
T 1iy9_A 154 VDSTEPVGP-AV-------------NLF--------TKGFYAGIAKALKEDGI 184 (275)
T ss_dssp ESCSSCCSC-CC-------------CCS--------TTHHHHHHHHHEEEEEE
T ss_pred ECCCCCCCc-ch-------------hhh--------HHHHHHHHHHhcCCCcE
Confidence 999863110 00 000 12577888899999985
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=2.7e-13 Score=121.97 Aligned_cols=105 Identities=16% Similarity=0.140 Sum_probs=81.6
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccccc-CCCCeeEEEEc
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKD-VEGKLSGVVSN 273 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~-~~~~fDlIVsN 273 (324)
++++|||+|||+|..+..+++.. + .+|+|||+|+.+++.|+++.+..+. +++++.+|+.+.... ..++||.|+.+
T Consensus 60 ~G~rVLdiG~G~G~~~~~~~~~~-~-~~v~~id~~~~~~~~a~~~~~~~~~--~~~~~~~~a~~~~~~~~~~~FD~i~~D 135 (236)
T 3orh_A 60 KGGRVLEVGFGMAIAASKVQEAP-I-DEHWIIECNDGVFQRLRDWAPRQTH--KVIPLKGLWEDVAPTLPDGHFDGILYD 135 (236)
T ss_dssp TCEEEEEECCTTSHHHHHHTTSC-E-EEEEEEECCHHHHHHHHHHGGGCSS--EEEEEESCHHHHGGGSCTTCEEEEEEC
T ss_pred CCCeEEEECCCccHHHHHHHHhC-C-cEEEEEeCCHHHHHHHHHHHhhCCC--ceEEEeehHHhhcccccccCCceEEEe
Confidence 46799999999999999998863 3 6899999999999999999887764 589999998764332 24689999997
Q ss_pred CCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 274 PPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
+.... ....| +.....+++++.++|||||+
T Consensus 136 ~~~~~---------~~~~~------------~~~~~~~~~e~~rvLkPGG~ 165 (236)
T 3orh_A 136 TYPLS---------EETWH------------THQFNFIKNHAFRLLKPGGV 165 (236)
T ss_dssp CCCCB---------GGGTT------------THHHHHHHHTHHHHEEEEEE
T ss_pred eeecc---------cchhh------------hcchhhhhhhhhheeCCCCE
Confidence 54321 11122 33455789999999999994
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.42 E-value=5e-13 Score=118.71 Aligned_cols=113 Identities=15% Similarity=0.110 Sum_probs=85.9
Q ss_pred HHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccc
Q 020573 179 MVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFG 258 (324)
Q Consensus 179 lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~ 258 (324)
+.+.+.+.+ . ...++.+|||+|||+|.++..+++.+ ++.+|+|+|+|+.+++.|++++...+ +++++++|+.+
T Consensus 31 ~~~~~~~~~-~--~~~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~d~~~ 103 (234)
T 3dtn_A 31 FYGVSVSIA-S--VDTENPDILDLGAGTGLLSAFLMEKY-PEATFTLVDMSEKMLEIAKNRFRGNL---KVKYIEADYSK 103 (234)
T ss_dssp HHHHHHHTC-C--CSCSSCEEEEETCTTSHHHHHHHHHC-TTCEEEEEESCHHHHHHHHHHTCSCT---TEEEEESCTTT
T ss_pred HHHHHHHHh-h--cCCCCCeEEEecCCCCHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHhhccCC---CEEEEeCchhc
Confidence 345555544 2 12356799999999999999999986 78899999999999999999976554 69999999987
Q ss_pred ccccCCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 259 KLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 259 ~l~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
.... ++||+|+++..+. |-+. .....+++++.++|||||+
T Consensus 104 ~~~~--~~fD~v~~~~~l~--------------~~~~----------~~~~~~l~~~~~~LkpgG~ 143 (234)
T 3dtn_A 104 YDFE--EKYDMVVSALSIH--------------HLED----------EDKKELYKRSYSILKESGI 143 (234)
T ss_dssp CCCC--SCEEEEEEESCGG--------------GSCH----------HHHHHHHHHHHHHEEEEEE
T ss_pred cCCC--CCceEEEEeCccc--------------cCCH----------HHHHHHHHHHHHhcCCCcE
Confidence 4332 7899999974432 2111 1223588999999999994
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=1e-12 Score=122.42 Aligned_cols=98 Identities=13% Similarity=0.091 Sum_probs=78.5
Q ss_pred CCCCCCeEEEEcCCccHHH-HHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEE
Q 020573 192 DGLRDGFWVDLGTGSGAIA-IGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGV 270 (324)
Q Consensus 192 ~~~~~~~VLDLGcGsG~ia-i~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlI 270 (324)
...++.+|||+|||+|.++ +.+|+. ++++|+|+|+|+++++.|++|+++.|+ ++++++++|..+. + .+.||+|
T Consensus 119 ~l~~g~rVLDIGcG~G~~ta~~lA~~--~ga~V~gIDis~~~l~~Ar~~~~~~gl-~~v~~v~gDa~~l-~--d~~FDvV 192 (298)
T 3fpf_A 119 RFRRGERAVFIGGGPLPLTGILLSHV--YGMRVNVVEIEPDIAELSRKVIEGLGV-DGVNVITGDETVI-D--GLEFDVL 192 (298)
T ss_dssp TCCTTCEEEEECCCSSCHHHHHHHHT--TCCEEEEEESSHHHHHHHHHHHHHHTC-CSEEEEESCGGGG-G--GCCCSEE
T ss_pred CCCCcCEEEEECCCccHHHHHHHHHc--cCCEEEEEECCHHHHHHHHHHHHhcCC-CCeEEEECchhhC-C--CCCcCEE
Confidence 3446789999999999766 445553 578999999999999999999999999 7899999999873 3 3789999
Q ss_pred EEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 271 VSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 271 VsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
+++- . + .....+++++.++|||||+
T Consensus 193 ~~~a----------~---~----------------~d~~~~l~el~r~LkPGG~ 217 (298)
T 3fpf_A 193 MVAA----------L---A----------------EPKRRVFRNIHRYVDTETR 217 (298)
T ss_dssp EECT----------T---C----------------SCHHHHHHHHHHHCCTTCE
T ss_pred EECC----------C---c----------------cCHHHHHHHHHHHcCCCcE
Confidence 9831 0 0 0123688999999999995
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.42 E-value=3.9e-13 Score=123.35 Aligned_cols=80 Identities=16% Similarity=0.200 Sum_probs=69.4
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHc-CCCCcEEEEEcccccccccCCCCeeEEE
Q 020573 193 GLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRY-GLQDIIEIRQGSWFGKLKDVEGKLSGVV 271 (324)
Q Consensus 193 ~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~-gl~~rv~~~~gD~~~~l~~~~~~fDlIV 271 (324)
..++.+|||+|||+|.+++.+++.+.+..+|+|+|+++.+++.|++|++.+ |.. +++++++|+.+.+. .++||+|+
T Consensus 108 ~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~-~v~~~~~d~~~~~~--~~~fD~Vi 184 (275)
T 1yb2_A 108 LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIG-NVRTSRSDIADFIS--DQMYDAVI 184 (275)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCT-TEEEECSCTTTCCC--SCCEEEEE
T ss_pred CCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCC-cEEEEECchhccCc--CCCccEEE
Confidence 345679999999999999999997556789999999999999999999988 854 59999999988544 36899999
Q ss_pred EcCC
Q 020573 272 SNPP 275 (324)
Q Consensus 272 sNPP 275 (324)
+|+|
T Consensus 185 ~~~~ 188 (275)
T 1yb2_A 185 ADIP 188 (275)
T ss_dssp ECCS
T ss_pred EcCc
Confidence 9876
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.41 E-value=1.3e-12 Score=120.26 Aligned_cols=102 Identities=25% Similarity=0.281 Sum_probs=83.7
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEc
Q 020573 194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN 273 (324)
Q Consensus 194 ~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsN 273 (324)
.++.+|||+|||+|.++..+++.+ +.+|+|+|+|+.+++.|++++...++.++++++++|+.+. +...++||+|+++
T Consensus 81 ~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~fD~v~~~ 157 (297)
T 2o57_A 81 QRQAKGLDLGAGYGGAARFLVRKF--GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEI-PCEDNSYDFIWSQ 157 (297)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSC-SSCTTCEEEEEEE
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccC-CCCCCCEeEEEec
Confidence 356799999999999999999986 4699999999999999999999999988899999999873 3234789999995
Q ss_pred CCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 274 PPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
-. ..|-+. ...+++++.++|||||+
T Consensus 158 ~~--------------l~~~~~------------~~~~l~~~~~~LkpgG~ 182 (297)
T 2o57_A 158 DA--------------FLHSPD------------KLKVFQECARVLKPRGV 182 (297)
T ss_dssp SC--------------GGGCSC------------HHHHHHHHHHHEEEEEE
T ss_pred ch--------------hhhcCC------------HHHHHHHHHHHcCCCeE
Confidence 22 233221 34788999999999994
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.41 E-value=7.3e-13 Score=116.23 Aligned_cols=81 Identities=16% Similarity=0.198 Sum_probs=69.6
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEc
Q 020573 194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN 273 (324)
Q Consensus 194 ~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsN 273 (324)
.++.+|||+|||+|.++..+++..+++.+|+++|+++.+++.|++|+..+++.+ +++..+|+.+.+.. .++||+|+++
T Consensus 76 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~-~~~fD~v~~~ 153 (215)
T 2yxe_A 76 KPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDN-VIVIVGDGTLGYEP-LAPYDRIYTT 153 (215)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTT-EEEEESCGGGCCGG-GCCEEEEEES
T ss_pred CCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-eEEEECCcccCCCC-CCCeeEEEEC
Confidence 356799999999999999999987566899999999999999999999988865 99999998765442 3689999998
Q ss_pred CCC
Q 020573 274 PPY 276 (324)
Q Consensus 274 PPY 276 (324)
.++
T Consensus 154 ~~~ 156 (215)
T 2yxe_A 154 AAG 156 (215)
T ss_dssp SBB
T ss_pred Cch
Confidence 654
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=6.2e-13 Score=116.63 Aligned_cols=99 Identities=14% Similarity=0.123 Sum_probs=79.9
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNP 274 (324)
++.+|||+|||+|.++..+++.. .+|+|+|+|+.+++.|++++...+ +++++++|+.+.. ..++||+|+++.
T Consensus 51 ~~~~vLDiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~d~~~~~--~~~~fD~v~~~~ 122 (216)
T 3ofk_A 51 AVSNGLEIGCAAGAFTEKLAPHC---KRLTVIDVMPRAIGRACQRTKRWS---HISWAATDILQFS--TAELFDLIVVAE 122 (216)
T ss_dssp SEEEEEEECCTTSHHHHHHGGGE---EEEEEEESCHHHHHHHHHHTTTCS---SEEEEECCTTTCC--CSCCEEEEEEES
T ss_pred CCCcEEEEcCCCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHhcccCC---CeEEEEcchhhCC--CCCCccEEEEcc
Confidence 45799999999999999999873 699999999999999999987643 6999999998754 357999999973
Q ss_pred CCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 275 PYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
.+ .|-+. .+.+..+++++.++|||||+
T Consensus 123 ~l--------------~~~~~---------~~~~~~~l~~~~~~L~pgG~ 149 (216)
T 3ofk_A 123 VL--------------YYLED---------MTQMRTAIDNMVKMLAPGGH 149 (216)
T ss_dssp CG--------------GGSSS---------HHHHHHHHHHHHHTEEEEEE
T ss_pred HH--------------HhCCC---------HHHHHHHHHHHHHHcCCCCE
Confidence 32 22221 23455789999999999995
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=1.3e-12 Score=121.84 Aligned_cols=102 Identities=12% Similarity=0.093 Sum_probs=83.7
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEE
Q 020573 193 GLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVS 272 (324)
Q Consensus 193 ~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVs 272 (324)
..++.+|||+|||+|.++..+++.+ +.+|+|+|+|+.+++.|++++...++.++++++.+|+.+. + ++||+|++
T Consensus 88 ~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~---~~fD~v~~ 161 (318)
T 2fk8_A 88 LKPGMTLLDIGCGWGTTMRRAVERF--DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF-A---EPVDRIVS 161 (318)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGC-C---CCCSEEEE
T ss_pred CCCcCEEEEEcccchHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHC-C---CCcCEEEE
Confidence 3456799999999999999999986 4699999999999999999999999888899999998653 2 68999999
Q ss_pred cCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 273 NPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 273 NPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
+-.+ .|-+. +....+++++.++|||||+
T Consensus 162 ~~~l--------------~~~~~----------~~~~~~l~~~~~~LkpgG~ 189 (318)
T 2fk8_A 162 IEAF--------------EHFGH----------ENYDDFFKRCFNIMPADGR 189 (318)
T ss_dssp ESCG--------------GGTCG----------GGHHHHHHHHHHHSCTTCE
T ss_pred eChH--------------HhcCH----------HHHHHHHHHHHHhcCCCcE
Confidence 6322 22211 2345789999999999995
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=6.6e-13 Score=117.56 Aligned_cols=81 Identities=17% Similarity=0.240 Sum_probs=68.8
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCC----CCcEEEEEcccccccccCCCCeeEE
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGL----QDIIEIRQGSWFGKLKDVEGKLSGV 270 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl----~~rv~~~~gD~~~~l~~~~~~fDlI 270 (324)
++.+|||+|||+|.++..+++.+++..+|+|+|+++.+++.|++|+..+++ .++++++++|+.+.... .++||+|
T Consensus 77 ~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~fD~i 155 (226)
T 1i1n_A 77 EGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAE-EAPYDAI 155 (226)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGG-GCCEEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCccc-CCCcCEE
Confidence 467999999999999999999875667999999999999999999998764 34699999998764332 3689999
Q ss_pred EEcCCC
Q 020573 271 VSNPPY 276 (324)
Q Consensus 271 VsNPPY 276 (324)
+++.++
T Consensus 156 ~~~~~~ 161 (226)
T 1i1n_A 156 HVGAAA 161 (226)
T ss_dssp EECSBB
T ss_pred EECCch
Confidence 998765
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.41 E-value=7.8e-13 Score=124.77 Aligned_cols=82 Identities=17% Similarity=0.295 Sum_probs=66.1
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcC----------CCCcEEEEEcccccccccC
Q 020573 194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYG----------LQDIIEIRQGSWFGKLKDV 263 (324)
Q Consensus 194 ~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~g----------l~~rv~~~~gD~~~~l~~~ 263 (324)
.++.+|||+|||+|.+++.+++.+++..+|+|+|+++.+++.|++|+...+ ..++++++.+|+.+.....
T Consensus 104 ~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~~~~ 183 (336)
T 2b25_A 104 NPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDI 183 (336)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC---
T ss_pred CCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHccccc
Confidence 356799999999999999999987677899999999999999999998643 2357999999998754222
Q ss_pred -CCCeeEEEEcCC
Q 020573 264 -EGKLSGVVSNPP 275 (324)
Q Consensus 264 -~~~fDlIVsNPP 275 (324)
.++||+|++|+|
T Consensus 184 ~~~~fD~V~~~~~ 196 (336)
T 2b25_A 184 KSLTFDAVALDML 196 (336)
T ss_dssp ----EEEEEECSS
T ss_pred CCCCeeEEEECCC
Confidence 357999999876
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.41 E-value=7.8e-13 Score=119.30 Aligned_cols=110 Identities=20% Similarity=0.238 Sum_probs=81.7
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHc--------CCCCcEEEEEccccccccc--CC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRY--------GLQDIIEIRQGSWFGKLKD--VE 264 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~--------gl~~rv~~~~gD~~~~l~~--~~ 264 (324)
++.+|||+|||+|.+++.+++.. ++.+|+|+|+|+.+++.|++|++.+ ++. +++++++|+++.+.. ..
T Consensus 49 ~~~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~-nv~~~~~D~~~~l~~~~~~ 126 (246)
T 2vdv_E 49 KKVTIADIGCGFGGLMIDLSPAF-PEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQ-NINVLRGNAMKFLPNFFEK 126 (246)
T ss_dssp CCEEEEEETCTTSHHHHHHHHHS-TTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTT-TEEEEECCTTSCGGGTSCT
T ss_pred CCCEEEEEcCCCCHHHHHHHHhC-CCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCC-cEEEEeccHHHHHHHhccc
Confidence 45689999999999999999985 7789999999999999999999887 775 599999999875542 24
Q ss_pred CCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 265 GKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 265 ~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
+.+|.|+.+-|--... .+.+..+. ....+++.+.++|||||+
T Consensus 127 ~~~d~v~~~~p~p~~k--------~~~~~~r~----------~~~~~l~~~~~~LkpgG~ 168 (246)
T 2vdv_E 127 GQLSKMFFCFPDPHFK--------QRKHKARI----------ITNTLLSEYAYVLKEGGV 168 (246)
T ss_dssp TCEEEEEEESCCCC--------------CSSC----------CCHHHHHHHHHHEEEEEE
T ss_pred cccCEEEEECCCcccc--------cchhHHhh----------ccHHHHHHHHHHcCCCCE
Confidence 6899998773321100 00111110 024688889999999984
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=1.5e-12 Score=112.04 Aligned_cols=100 Identities=17% Similarity=0.123 Sum_probs=80.9
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNP 274 (324)
++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|++++..+++.+ ++++.+|+.+.. . .++||+|+++.
T Consensus 32 ~~~~vLdiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~~-~~~~~~d~~~~~-~-~~~~D~v~~~~ 105 (199)
T 2xvm_A 32 KPGKTLDLGCGNGRNSLYLAAN---GYDVDAWDKNAMSIANVERIKSIENLDN-LHTRVVDLNNLT-F-DRQYDFILSTV 105 (199)
T ss_dssp CSCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHHTCTT-EEEEECCGGGCC-C-CCCEEEEEEES
T ss_pred CCCeEEEEcCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHhCCCCC-cEEEEcchhhCC-C-CCCceEEEEcc
Confidence 4669999999999999999986 3699999999999999999999888754 999999988742 2 57899999975
Q ss_pred CCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 275 PYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
.+. |-+. +....+++.+.++|||||+
T Consensus 106 ~l~--------------~~~~----------~~~~~~l~~~~~~L~~gG~ 131 (199)
T 2xvm_A 106 VLM--------------FLEA----------KTIPGLIANMQRCTKPGGY 131 (199)
T ss_dssp CGG--------------GSCG----------GGHHHHHHHHHHTEEEEEE
T ss_pred hhh--------------hCCH----------HHHHHHHHHHHHhcCCCeE
Confidence 432 1110 1234688999999999984
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.41 E-value=1.2e-12 Score=124.64 Aligned_cols=116 Identities=20% Similarity=0.185 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcc
Q 020573 176 TELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGS 255 (324)
Q Consensus 176 te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD 255 (324)
++.+.+.+.+.+ ...++.+|||+|||+|.+++.+++. +..+|+|+|+|+ +++.|+++++.+++.++++++.+|
T Consensus 35 ~~~y~~~i~~~l----~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~~vD~s~-~~~~a~~~~~~~~l~~~v~~~~~d 107 (348)
T 2y1w_A 35 TGTYQRAILQNH----TDFKDKIVLDVGCGSGILSFFAAQA--GARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGK 107 (348)
T ss_dssp HHHHHHHHHHTG----GGTTTCEEEEETCTTSHHHHHHHHT--TCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESC
T ss_pred HHHHHHHHHhcc----ccCCcCEEEEcCCCccHHHHHHHhC--CCCEEEEECCHH-HHHHHHHHHHHcCCCCcEEEEEcc
Confidence 344445555444 2235679999999999999999985 457999999996 889999999999998889999999
Q ss_pred cccccccCCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 256 WFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 256 ~~~~l~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
+.+.. ..++||+||+++++.-- . . +.+...+..+.++|||||+
T Consensus 108 ~~~~~--~~~~~D~Ivs~~~~~~~------~-----~-------------~~~~~~l~~~~~~LkpgG~ 150 (348)
T 2y1w_A 108 VEEVS--LPEQVDIIISEPMGYML------F-----N-------------ERMLESYLHAKKYLKPSGN 150 (348)
T ss_dssp TTTCC--CSSCEEEEEECCCBTTB------T-----T-------------TSHHHHHHHGGGGEEEEEE
T ss_pred hhhCC--CCCceeEEEEeCchhcC------C-----h-------------HHHHHHHHHHHhhcCCCeE
Confidence 98732 23689999999874310 0 0 0112456678899999984
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.40 E-value=2.5e-13 Score=118.70 Aligned_cols=88 Identities=13% Similarity=-0.042 Sum_probs=70.5
Q ss_pred hHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEc
Q 020573 175 ETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQG 254 (324)
Q Consensus 175 ~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~g 254 (324)
.-+.+.+.+...+ ..+.+|||+|||+|.+++.++... |+++|+|+|+|+.|+++|++|+..+|+.+++++ .
T Consensus 35 ~ld~fY~~~~~~l------~~~~~VLDlGCG~GplAl~l~~~~-p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~--~ 105 (200)
T 3fzg_A 35 TLNDFYTYVFGNI------KHVSSILDFGCGFNPLALYQWNEN-EKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--L 105 (200)
T ss_dssp GHHHHHHHHHHHS------CCCSEEEEETCTTHHHHHHHHCSS-CCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEE--E
T ss_pred hHHHHHHHHHhhc------CCCCeEEEecCCCCHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEE--e
Confidence 3344555555554 236699999999999999999975 888999999999999999999999999866777 6
Q ss_pred ccccccccCCCCeeEEEEc
Q 020573 255 SWFGKLKDVEGKLSGVVSN 273 (324)
Q Consensus 255 D~~~~l~~~~~~fDlIVsN 273 (324)
|..+.. ..++||+|+++
T Consensus 106 d~~~~~--~~~~~DvVLa~ 122 (200)
T 3fzg_A 106 NKESDV--YKGTYDVVFLL 122 (200)
T ss_dssp CCHHHH--TTSEEEEEEEE
T ss_pred cccccC--CCCCcChhhHh
Confidence 665443 24789999995
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.2e-12 Score=119.19 Aligned_cols=102 Identities=17% Similarity=0.197 Sum_probs=83.5
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEc
Q 020573 194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN 273 (324)
Q Consensus 194 ~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsN 273 (324)
.++.+|||+|||+|.++..+++.. ++.+|+|+|+|+.+++.|++++...++. +++++.+|+.+. ....++||+|+++
T Consensus 36 ~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~-~~~~~~fD~v~~~ 112 (276)
T 3mgg_A 36 PPGAKVLEAGCGIGAQTVILAKNN-PDAEITSIDISPESLEKARENTEKNGIK-NVKFLQANIFSL-PFEDSSFDHIFVC 112 (276)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCGGGC-CSCTTCEEEEEEE
T ss_pred CCCCeEEEecCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCC-CcEEEEcccccC-CCCCCCeeEEEEe
Confidence 456799999999999999999985 7889999999999999999999999886 499999999863 2235799999996
Q ss_pred CCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 274 PPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
..+ .|-+. ...+++++.++|||||+
T Consensus 113 ~~l--------------~~~~~------------~~~~l~~~~~~L~pgG~ 137 (276)
T 3mgg_A 113 FVL--------------EHLQS------------PEEALKSLKKVLKPGGT 137 (276)
T ss_dssp SCG--------------GGCSC------------HHHHHHHHHHHEEEEEE
T ss_pred chh--------------hhcCC------------HHHHHHHHHHHcCCCcE
Confidence 432 22221 12678889999999985
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=7e-13 Score=118.53 Aligned_cols=105 Identities=15% Similarity=0.143 Sum_probs=79.1
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc-cCCCCeeEEEEc
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK-DVEGKLSGVVSN 273 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~-~~~~~fDlIVsN 273 (324)
++.+|||+|||+|.++..+++. ...+|+|+|+|+.+++.|+++++..+ .+++++++|+.+... ...++||+|++|
T Consensus 60 ~~~~vLDiGcGtG~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~fD~V~~d 135 (236)
T 1zx0_A 60 KGGRVLEVGFGMAIAASKVQEA--PIDEHWIIECNDGVFQRLRDWAPRQT--HKVIPLKGLWEDVAPTLPDGHFDGILYD 135 (236)
T ss_dssp TCEEEEEECCTTSHHHHHHHTS--CEEEEEEEECCHHHHHHHHHHGGGCS--SEEEEEESCHHHHGGGSCTTCEEEEEEC
T ss_pred CCCeEEEEeccCCHHHHHHHhc--CCCeEEEEcCCHHHHHHHHHHHHhcC--CCeEEEecCHHHhhcccCCCceEEEEEC
Confidence 4569999999999999999764 33599999999999999999988766 469999999977422 224689999995
Q ss_pred CCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 274 PPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
.|.. . .+.++ ......+++++.++|||||+
T Consensus 136 -~~~~--~---------~~~~~---------~~~~~~~l~~~~r~LkpgG~ 165 (236)
T 1zx0_A 136 -TYPL--S---------EETWH---------THQFNFIKNHAFRLLKPGGV 165 (236)
T ss_dssp -CCCC--B---------GGGTT---------THHHHHHHHTHHHHEEEEEE
T ss_pred -Cccc--c---------hhhhh---------hhhHHHHHHHHHHhcCCCeE
Confidence 2211 0 00111 23445788999999999995
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.40 E-value=4.7e-13 Score=128.83 Aligned_cols=102 Identities=21% Similarity=0.171 Sum_probs=79.8
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNP 274 (324)
++++|||+|||+|.+++.+|+. ...+|+|||.|+ +++.|+++++.||+.++|+++++|..+.- +.++||+|||++
T Consensus 83 ~~k~VLDvG~GtGiLs~~Aa~a--GA~~V~ave~s~-~~~~a~~~~~~n~~~~~i~~i~~~~~~~~--lpe~~DvivsE~ 157 (376)
T 4hc4_A 83 RGKTVLDVGAGTGILSIFCAQA--GARRVYAVEASA-IWQQAREVVRFNGLEDRVHVLPGPVETVE--LPEQVDAIVSEW 157 (376)
T ss_dssp TTCEEEEETCTTSHHHHHHHHT--TCSEEEEEECST-THHHHHHHHHHTTCTTTEEEEESCTTTCC--CSSCEEEEECCC
T ss_pred CCCEEEEeCCCccHHHHHHHHh--CCCEEEEEeChH-HHHHHHHHHHHcCCCceEEEEeeeeeeec--CCccccEEEeec
Confidence 5779999999999999988885 346999999996 88999999999999999999999987742 236899999963
Q ss_pred CCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 275 PYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
- .....+|.. +..++....++|||||+
T Consensus 158 ~-----------~~~l~~e~~------------l~~~l~a~~r~Lkp~G~ 184 (376)
T 4hc4_A 158 M-----------GYGLLHESM------------LSSVLHARTKWLKEGGL 184 (376)
T ss_dssp C-----------BTTBTTTCS------------HHHHHHHHHHHEEEEEE
T ss_pred c-----------cccccccch------------hhhHHHHHHhhCCCCce
Confidence 2 111223322 33566667789999984
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=4.5e-13 Score=120.75 Aligned_cols=115 Identities=16% Similarity=0.221 Sum_probs=87.7
Q ss_pred Cccccc-chHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHH---hCCCcEEEEEeCCHHHHHHHHHHHHHc
Q 020573 168 GVFIPR-PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARV---LGSKGSIIAVDLNPLAAAVAAFNAQRY 243 (324)
Q Consensus 168 ~vliPr-p~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~---~~p~~~V~gvDis~~al~~Ar~N~~~~ 243 (324)
++.+++ |+++.++..++... ++.+|||+|||+|.+++.+++. +.++++|+|+|+|+.+++.|+
T Consensus 60 ~~~~~~~p~~~~~l~~~l~~~-------~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~------ 126 (236)
T 2bm8_A 60 GLRMLKDPDTQAVYHDMLWEL-------RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA------ 126 (236)
T ss_dssp TEECCSCHHHHHHHHHHHHHH-------CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG------
T ss_pred cccccCCHHHHHHHHHHHHhc-------CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHh------
Confidence 566677 88888887776654 2469999999999999999997 347799999999999999887
Q ss_pred CCCCcEEEEEcccccc--cccCC-CCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhc-cc
Q 020573 244 GLQDIIEIRQGSWFGK--LKDVE-GKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTAS-ML 319 (324)
Q Consensus 244 gl~~rv~~~~gD~~~~--l~~~~-~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~-~L 319 (324)
++.++++++++|+.+. ++... .+||+|+++-. |. .+..++.++.+ +|
T Consensus 127 ~~~~~v~~~~gD~~~~~~l~~~~~~~fD~I~~d~~----------------~~-------------~~~~~l~~~~r~~L 177 (236)
T 2bm8_A 127 SDMENITLHQGDCSDLTTFEHLREMAHPLIFIDNA----------------HA-------------NTFNIMKWAVDHLL 177 (236)
T ss_dssp GGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEESS----------------CS-------------SHHHHHHHHHHHTC
T ss_pred ccCCceEEEECcchhHHHHHhhccCCCCEEEECCc----------------hH-------------hHHHHHHHHHHhhC
Confidence 2235799999999874 33222 37999998532 10 12357888886 99
Q ss_pred CCCCC
Q 020573 320 KPDKW 324 (324)
Q Consensus 320 kpgG~ 324 (324)
||||+
T Consensus 178 kpGG~ 182 (236)
T 2bm8_A 178 EEGDY 182 (236)
T ss_dssp CTTCE
T ss_pred CCCCE
Confidence 99995
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.40 E-value=1e-12 Score=120.57 Aligned_cols=99 Identities=13% Similarity=0.078 Sum_probs=81.6
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNP 274 (324)
++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|++++..+++ +++++++|+.+... .++||+|++|.
T Consensus 120 ~~~~vLD~GcG~G~~~~~l~~~---g~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~--~~~fD~i~~~~ 192 (286)
T 3m70_A 120 SPCKVLDLGCGQGRNSLYLSLL---GYDVTSWDHNENSIAFLNETKEKENL--NISTALYDINAANI--QENYDFIVSTV 192 (286)
T ss_dssp CSCEEEEESCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCGGGCCC--CSCEEEEEECS
T ss_pred CCCcEEEECCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHHcCC--ceEEEEeccccccc--cCCccEEEEcc
Confidence 4679999999999999999986 36999999999999999999999987 59999999987433 47899999987
Q ss_pred CCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 275 PYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
++. |-+. .....+++.+.++|||||+
T Consensus 193 ~~~--------------~~~~----------~~~~~~l~~~~~~LkpgG~ 218 (286)
T 3m70_A 193 VFM--------------FLNR----------ERVPSIIKNMKEHTNVGGY 218 (286)
T ss_dssp SGG--------------GSCG----------GGHHHHHHHHHHTEEEEEE
T ss_pred chh--------------hCCH----------HHHHHHHHHHHHhcCCCcE
Confidence 653 1110 1234688999999999994
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.39 E-value=1e-12 Score=117.24 Aligned_cols=99 Identities=16% Similarity=0.136 Sum_probs=77.5
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc--cCCCCeeEEE
Q 020573 194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK--DVEGKLSGVV 271 (324)
Q Consensus 194 ~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~--~~~~~fDlIV 271 (324)
.++.+|||+|||+|.++..+++.+ +..+|+|+|+|+.+++.|++|++.+ +++.++.+|+.++.. ...++||+|+
T Consensus 73 ~~~~~VLDlGcG~G~~~~~la~~~-~~~~v~gvD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~~~~D~v~ 148 (230)
T 1fbn_A 73 KRDSKILYLGASAGTTPSHVADIA-DKGIVYAIEYAPRIMRELLDACAER---ENIIPILGDANKPQEYANIVEKVDVIY 148 (230)
T ss_dssp CTTCEEEEESCCSSHHHHHHHHHT-TTSEEEEEESCHHHHHHHHHHTTTC---TTEEEEECCTTCGGGGTTTSCCEEEEE
T ss_pred CCCCEEEEEcccCCHHHHHHHHHc-CCcEEEEEECCHHHHHHHHHHhhcC---CCeEEEECCCCCcccccccCccEEEEE
Confidence 356799999999999999999986 4689999999999999999998755 469999999876311 1126899999
Q ss_pred EcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 272 SNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 272 sNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
.++|.. +....+++++.++|||||+
T Consensus 149 ~~~~~~----------------------------~~~~~~l~~~~~~LkpgG~ 173 (230)
T 1fbn_A 149 EDVAQP----------------------------NQAEILIKNAKWFLKKGGY 173 (230)
T ss_dssp ECCCST----------------------------THHHHHHHHHHHHEEEEEE
T ss_pred EecCCh----------------------------hHHHHHHHHHHHhCCCCcE
Confidence 764321 0123568888889999884
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.39 E-value=4.4e-13 Score=117.67 Aligned_cols=103 Identities=12% Similarity=0.011 Sum_probs=76.3
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcC-----------CCCcEEEEEcccccccccC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYG-----------LQDIIEIRQGSWFGKLKDV 263 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~g-----------l~~rv~~~~gD~~~~l~~~ 263 (324)
++.+|||+|||+|..+..+++. +.+|+|+|+|+.|++.|+++..... ...+++++++|+.+.....
T Consensus 22 ~~~~vLD~GCG~G~~~~~la~~---g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~ 98 (203)
T 1pjz_A 22 PGARVLVPLCGKSQDMSWLSGQ---GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARD 98 (203)
T ss_dssp TTCEEEETTTCCSHHHHHHHHH---CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHH
T ss_pred CCCEEEEeCCCCcHhHHHHHHC---CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCccc
Confidence 4679999999999999999986 3699999999999999998764310 1246999999998742210
Q ss_pred CCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 264 EGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 264 ~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
.++||+|+++--+. |-| .+....+++++.++|||||+
T Consensus 99 ~~~fD~v~~~~~l~--------------~l~----------~~~~~~~l~~~~r~LkpgG~ 135 (203)
T 1pjz_A 99 IGHCAAFYDRAAMI--------------ALP----------ADMRERYVQHLEALMPQACS 135 (203)
T ss_dssp HHSEEEEEEESCGG--------------GSC----------HHHHHHHHHHHHHHSCSEEE
T ss_pred CCCEEEEEECcchh--------------hCC----------HHHHHHHHHHHHHHcCCCcE
Confidence 15899999853321 111 12234688999999999994
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=99.39 E-value=2.4e-12 Score=125.97 Aligned_cols=114 Identities=13% Similarity=0.126 Sum_probs=83.8
Q ss_pred HHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHH-------HHHHHHcCCC-CcEE
Q 020573 179 MVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVA-------AFNAQRYGLQ-DIIE 250 (324)
Q Consensus 179 lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~A-------r~N~~~~gl~-~rv~ 250 (324)
++..+++.+ ....+.+|||+|||+|.+++.+|+.+ +..+|+|+|+++.+++.| ++|++.+|+. ++++
T Consensus 230 ~v~~ml~~l----~l~~g~~VLDLGCGsG~la~~LA~~~-g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~ 304 (433)
T 1u2z_A 230 FLSDVYQQC----QLKKGDTFMDLGSGVGNCVVQAALEC-GCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVE 304 (433)
T ss_dssp HHHHHHHHT----TCCTTCEEEEESCTTSHHHHHHHHHH-CCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEE
T ss_pred HHHHHHHhc----CCCCCCEEEEeCCCcCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceE
Confidence 444444444 23456799999999999999999986 556899999999999999 9999999853 5699
Q ss_pred EEEccccc-c--cccCCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 251 IRQGSWFG-K--LKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 251 ~~~gD~~~-~--l~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
++++|.+. . +....++||+|++|.... . ..+...++++.+.|||||.
T Consensus 305 ~i~gD~~~~~~~~~~~~~~FDvIvvn~~l~---------------~------------~d~~~~L~el~r~LKpGG~ 354 (433)
T 1u2z_A 305 FSLKKSFVDNNRVAELIPQCDVILVNNFLF---------------D------------EDLNKKVEKILQTAKVGCK 354 (433)
T ss_dssp EEESSCSTTCHHHHHHGGGCSEEEECCTTC---------------C------------HHHHHHHHHHHTTCCTTCE
T ss_pred EEEcCccccccccccccCCCCEEEEeCccc---------------c------------ccHHHHHHHHHHhCCCCeE
Confidence 99986543 1 111125899999974321 0 1123467888999999994
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.39 E-value=7.7e-13 Score=119.25 Aligned_cols=108 Identities=14% Similarity=0.138 Sum_probs=79.4
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHH------cCCCCcEEEEEcccccccc--cCCCC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR------YGLQDIIEIRQGSWFGKLK--DVEGK 266 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~------~gl~~rv~~~~gD~~~~l~--~~~~~ 266 (324)
.+.+|||+|||+|.+++.+|+.+ ++..|+|+|+|+.+++.|++|++. .++. +++++++|+.+.++ ...++
T Consensus 46 ~~~~vLDiGcG~G~~~~~la~~~-p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~-nv~~~~~d~~~~l~~~~~~~~ 123 (235)
T 3ckk_A 46 AQVEFADIGCGYGGLLVELSPLF-PDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQ-NIACLRSNAMKHLPNFFYKGQ 123 (235)
T ss_dssp CCEEEEEETCTTCHHHHHHGGGS-TTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCT-TEEEEECCTTTCHHHHCCTTC
T ss_pred CCCeEEEEccCCcHHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCC-eEEEEECcHHHhhhhhCCCcC
Confidence 34589999999999999999986 788999999999999999999875 3454 59999999987443 12478
Q ss_pred eeEEEEcCC--CCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 267 LSGVVSNPP--YIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 267 fDlIVsNPP--Yi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
||.|++|-| +... +|.-+. .....+++.+.++|||||+
T Consensus 124 ~D~v~~~~~dp~~k~-----------~h~krr---------~~~~~~l~~~~~~LkpGG~ 163 (235)
T 3ckk_A 124 LTKMFFLFPDPHFKR-----------TKHKWR---------IISPTLLAEYAYVLRVGGL 163 (235)
T ss_dssp EEEEEEESCC-------------------------------CCCHHHHHHHHHHEEEEEE
T ss_pred eeEEEEeCCCchhhh-----------hhhhhh---------hhhHHHHHHHHHHCCCCCE
Confidence 999998743 2110 111000 0113688899999999984
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.1e-12 Score=118.49 Aligned_cols=114 Identities=13% Similarity=0.092 Sum_probs=87.8
Q ss_pred HHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccc
Q 020573 179 MVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFG 258 (324)
Q Consensus 179 lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~ 258 (324)
|...++.-+ ......++.+|||+|||+|.++..+|+..+++++|+|+|+++++++.++++++..+ ++..+.+|..+
T Consensus 62 laa~i~~gl-~~l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~---ni~~V~~d~~~ 137 (233)
T 4df3_A 62 LAAALLKGL-IELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRR---NIFPILGDARF 137 (233)
T ss_dssp HHHHHHTTC-SCCCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCT---TEEEEESCTTC
T ss_pred HHHHHHhch-hhcCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhc---CeeEEEEeccC
Confidence 444444433 33345678899999999999999999999999999999999999999999886543 58999998876
Q ss_pred cc--ccCCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 259 KL--KDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 259 ~l--~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
+. ....+.+|+|+++.++.. ..+.++.++.+.|||||.
T Consensus 138 p~~~~~~~~~vDvVf~d~~~~~----------------------------~~~~~l~~~~r~LKpGG~ 177 (233)
T 4df3_A 138 PEKYRHLVEGVDGLYADVAQPE----------------------------QAAIVVRNARFFLRDGGY 177 (233)
T ss_dssp GGGGTTTCCCEEEEEECCCCTT----------------------------HHHHHHHHHHHHEEEEEE
T ss_pred ccccccccceEEEEEEeccCCh----------------------------hHHHHHHHHHHhccCCCE
Confidence 43 233568999999766531 112578888999999984
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.38 E-value=1.4e-12 Score=120.06 Aligned_cols=101 Identities=14% Similarity=0.010 Sum_probs=81.6
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEc
Q 020573 194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN 273 (324)
Q Consensus 194 ~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsN 273 (324)
.++.+|||+|||+|.++..+++.++.+.+|+|+|+|+.+++.|++++...+. +++++++|+.+.. . .++||+|+++
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~-~-~~~fD~v~~~ 96 (284)
T 3gu3_A 21 TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY--DSEFLEGDATEIE-L-NDKYDIAICH 96 (284)
T ss_dssp CSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSS--EEEEEESCTTTCC-C-SSCEEEEEEE
T ss_pred CCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCC--ceEEEEcchhhcC-c-CCCeeEEEEC
Confidence 3567999999999999999999873358999999999999999999987765 6999999998732 2 4689999996
Q ss_pred CCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 274 PPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
... .|-+ ....+++++.++|||||+
T Consensus 97 ~~l--------------~~~~------------~~~~~l~~~~~~LkpgG~ 121 (284)
T 3gu3_A 97 AFL--------------LHMT------------TPETMLQKMIHSVKKGGK 121 (284)
T ss_dssp SCG--------------GGCS------------SHHHHHHHHHHTEEEEEE
T ss_pred Chh--------------hcCC------------CHHHHHHHHHHHcCCCCE
Confidence 322 2222 123788999999999995
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.38 E-value=2.2e-12 Score=117.83 Aligned_cols=82 Identities=20% Similarity=0.239 Sum_probs=69.7
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHc-C-CCCcEEEEEcccccccccCCCCeeEE
Q 020573 193 GLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRY-G-LQDIIEIRQGSWFGKLKDVEGKLSGV 270 (324)
Q Consensus 193 ~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~-g-l~~rv~~~~gD~~~~l~~~~~~fDlI 270 (324)
..++.+|||+|||+|.++..+++.+++..+|+++|+++.+++.|++|++.+ | +.++++++++|+.+... ..++||+|
T Consensus 97 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~~-~~~~~D~v 175 (280)
T 1i9g_A 97 IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSEL-PDGSVDRA 175 (280)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCC-CTTCEEEE
T ss_pred CCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcCC-CCCceeEE
Confidence 345679999999999999999997667789999999999999999999988 5 45579999999987521 24689999
Q ss_pred EEcCC
Q 020573 271 VSNPP 275 (324)
Q Consensus 271 VsNPP 275 (324)
++|+|
T Consensus 176 ~~~~~ 180 (280)
T 1i9g_A 176 VLDML 180 (280)
T ss_dssp EEESS
T ss_pred EECCc
Confidence 99876
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=1.9e-12 Score=115.86 Aligned_cols=100 Identities=21% Similarity=0.228 Sum_probs=80.5
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEc
Q 020573 194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN 273 (324)
Q Consensus 194 ~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsN 273 (324)
.++.+|||+|||+|.++..+++.. .+|+|+|+|+.+++.|++++..+++. +++++++|+.+ ++...++||+|+++
T Consensus 20 ~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~-~~~~~~~fD~v~~~ 94 (239)
T 1xxl_A 20 RAEHRVLDIGAGAGHTALAFSPYV---QECIGVDATKEMVEVASSFAQEKGVE-NVRFQQGTAES-LPFPDDSFDIITCR 94 (239)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHHTCC-SEEEEECBTTB-CCSCTTCEEEEEEE
T ss_pred CCCCEEEEEccCcCHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCCC-CeEEEeccccc-CCCCCCcEEEEEEC
Confidence 456799999999999999999874 59999999999999999999998876 59999999876 33334789999996
Q ss_pred CCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 274 PPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
-. ..|-+ ....+++++.++|||||+
T Consensus 95 ~~--------------l~~~~------------~~~~~l~~~~~~LkpgG~ 119 (239)
T 1xxl_A 95 YA--------------AHHFS------------DVRKAVREVARVLKQDGR 119 (239)
T ss_dssp SC--------------GGGCS------------CHHHHHHHHHHHEEEEEE
T ss_pred Cc--------------hhhcc------------CHHHHHHHHHHHcCCCcE
Confidence 22 12222 124688899999999984
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=1.3e-12 Score=122.07 Aligned_cols=150 Identities=13% Similarity=0.083 Sum_probs=97.1
Q ss_pred CCCceeEEe-ccc---ccCeeeeeeCCcccccch----HHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHh
Q 020573 146 RKPFQYLVG-CEH---WRDLVLSVEEGVFIPRPE----TELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVL 217 (324)
Q Consensus 146 ~~pl~yi~g-~~~---f~~l~~~v~~~vliPrp~----te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~ 217 (324)
..+.|+|.- +.. .++..+.++..+.....+ ++.+....+ . ....+.+|||+|||+|.++..+++..
T Consensus 44 ~s~~q~i~v~~~~p~g~~g~~l~ldg~~~~~~~de~~y~e~l~~~~l--~----~~~~~~~VLdiG~G~G~~~~~l~~~~ 117 (304)
T 3bwc_A 44 PTKFQHLTIFESDPKGPWGTVMALDGCIQVTDYDEFVYHEVLGHTSL--C----SHPKPERVLIIGGGDGGVLREVLRHG 117 (304)
T ss_dssp ECSSSEEEEEEECTTSSCCEEEEETTEEEEETTTHHHHHHHHHHHHH--T----TSSSCCEEEEEECTTSHHHHHHHTCT
T ss_pred ECCCCCEEEEEecCCCccceEEEECCeeeeecccchHHHHHHhhhhh--h----cCCCCCeEEEEcCCCCHHHHHHHhCC
Confidence 356666543 223 456666666543332222 233332211 1 11245799999999999999999863
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHH---cCCCCcEEEEEccccccccc-CCCCeeEEEEcCCCCCCCCcccchhhhhccc
Q 020573 218 GSKGSIIAVDLNPLAAAVAAFNAQR---YGLQDIIEIRQGSWFGKLKD-VEGKLSGVVSNPPYIPSDDISGLQVEVGKHE 293 (324)
Q Consensus 218 ~p~~~V~gvDis~~al~~Ar~N~~~---~gl~~rv~~~~gD~~~~l~~-~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~e 293 (324)
+..+|+++|+|+.+++.|++++.. .....+++++.+|+.+.+.. ..++||+|++|+++...
T Consensus 118 -~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvIi~d~~~~~~-------------- 182 (304)
T 3bwc_A 118 -TVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVVIIDTTDPAG-------------- 182 (304)
T ss_dssp -TCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEEEEECC------------------
T ss_pred -CCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEEEECCCCccc--------------
Confidence 568999999999999999998743 12245799999999875432 24689999999875210
Q ss_pred ccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 294 PRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 294 P~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
|...+. ...+++.+.++|||||+
T Consensus 183 ~~~~l~--------~~~~l~~~~~~LkpgG~ 205 (304)
T 3bwc_A 183 PASKLF--------GEAFYKDVLRILKPDGI 205 (304)
T ss_dssp -----C--------CHHHHHHHHHHEEEEEE
T ss_pred cchhhh--------HHHHHHHHHHhcCCCcE
Confidence 100000 13678888999999985
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.38 E-value=4.8e-13 Score=118.82 Aligned_cols=94 Identities=16% Similarity=0.140 Sum_probs=75.2
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNP 274 (324)
++.+|||+|||+|.++..+++.. .+|+|+|+|+.+++.|++++.. +++++++|+.+.. ..++||+|+++
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~~~~~-----~v~~~~~d~~~~~--~~~~fD~v~~~- 110 (250)
T 2p7i_A 42 RPGNLLELGSFKGDFTSRLQEHF---NDITCVEASEEAISHAQGRLKD-----GITYIHSRFEDAQ--LPRRYDNIVLT- 110 (250)
T ss_dssp CSSCEEEESCTTSHHHHHHTTTC---SCEEEEESCHHHHHHHHHHSCS-----CEEEEESCGGGCC--CSSCEEEEEEE-
T ss_pred CCCcEEEECCCCCHHHHHHHHhC---CcEEEEeCCHHHHHHHHHhhhC-----CeEEEEccHHHcC--cCCcccEEEEh-
Confidence 45689999999999999999863 4899999999999999988542 5999999998753 24789999995
Q ss_pred CCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHh-cccCCCCC
Q 020573 275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTA-SMLKPDKW 324 (324)
Q Consensus 275 PYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~-~~LkpgG~ 324 (324)
.+..|-+. ...+++++. ++|||||+
T Consensus 111 -------------~~l~~~~~------------~~~~l~~~~~~~LkpgG~ 136 (250)
T 2p7i_A 111 -------------HVLEHIDD------------PVALLKRINDDWLAEGGR 136 (250)
T ss_dssp -------------SCGGGCSS------------HHHHHHHHHHTTEEEEEE
T ss_pred -------------hHHHhhcC------------HHHHHHHHHHHhcCCCCE
Confidence 22333221 247899999 99999995
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=2.4e-12 Score=117.93 Aligned_cols=106 Identities=19% Similarity=0.236 Sum_probs=83.7
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNP 274 (324)
++.+|||+|||+|.++..+++. +..+|+|+|+|+.+++.|++++...++..+++++++|+.+......++||+|+++-
T Consensus 64 ~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~ 141 (298)
T 1ri5_A 64 RGDSVLDLGCGKGGDLLKYERA--GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQF 141 (298)
T ss_dssp TTCEEEEETCTTTTTHHHHHHH--TCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEES
T ss_pred CCCeEEEECCCCCHHHHHHHHC--CCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEECc
Confidence 4679999999999999998886 45699999999999999999999888877899999999874221246899999962
Q ss_pred CCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 275 PYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
.. .|- ....+....+++++.++|||||+
T Consensus 142 ~l--------------~~~--------~~~~~~~~~~l~~~~~~LkpgG~ 169 (298)
T 1ri5_A 142 SF--------------HYA--------FSTSESLDIAQRNIARHLRPGGY 169 (298)
T ss_dssp CG--------------GGG--------GSSHHHHHHHHHHHHHTEEEEEE
T ss_pred hh--------------hhh--------cCCHHHHHHHHHHHHHhcCCCCE
Confidence 21 110 01134566899999999999994
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.37 E-value=2.7e-12 Score=113.67 Aligned_cols=99 Identities=15% Similarity=0.032 Sum_probs=75.6
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccc--ccCCCCeeEEE
Q 020573 194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKL--KDVEGKLSGVV 271 (324)
Q Consensus 194 ~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l--~~~~~~fDlIV 271 (324)
.++.+|||+|||+|.++..+++.. ++++|+|+|+|+.+++.+.++++.. +++.++.+|..+.. ....++||+|+
T Consensus 56 ~~g~~VLDlGcGtG~~~~~la~~~-~~~~V~gvD~s~~~l~~~~~~a~~~---~~v~~~~~d~~~~~~~~~~~~~fD~V~ 131 (210)
T 1nt2_A 56 RGDERVLYLGAASGTTVSHLADIV-DEGIIYAVEYSAKPFEKLLELVRER---NNIIPLLFDASKPWKYSGIVEKVDLIY 131 (210)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHT-TTSEEEEECCCHHHHHHHHHHHHHC---SSEEEECSCTTCGGGTTTTCCCEEEEE
T ss_pred CCCCEEEEECCcCCHHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHhcC---CCeEEEEcCCCCchhhcccccceeEEE
Confidence 356799999999999999999986 4689999999999988777777654 35899999987641 12236899999
Q ss_pred EcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 272 SNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 272 sNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
+|.+. | +..+.+++++.++|||||+
T Consensus 132 ~~~~~-----------------~-----------~~~~~~l~~~~r~LkpgG~ 156 (210)
T 1nt2_A 132 QDIAQ-----------------K-----------NQIEILKANAEFFLKEKGE 156 (210)
T ss_dssp ECCCS-----------------T-----------THHHHHHHHHHHHEEEEEE
T ss_pred EeccC-----------------h-----------hHHHHHHHHHHHHhCCCCE
Confidence 98210 0 0122457889999999994
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.37 E-value=3.3e-12 Score=114.57 Aligned_cols=100 Identities=23% Similarity=0.190 Sum_probs=79.1
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNP 274 (324)
++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|++|+...+. +++++++|+.+.. ..++||+|+++.
T Consensus 41 ~~~~vLDlGcG~G~~~~~l~~~---~~~v~gvD~s~~~l~~a~~~~~~~~~--~v~~~~~d~~~~~--~~~~fD~v~~~~ 113 (252)
T 1wzn_A 41 EVRRVLDLACGTGIPTLELAER---GYEVVGLDLHEEMLRVARRKAKERNL--KIEFLQGDVLEIA--FKNEFDAVTMFF 113 (252)
T ss_dssp CCCEEEEETCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTC--CCEEEESCGGGCC--CCSCEEEEEECS
T ss_pred CCCEEEEeCCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHhcCC--ceEEEECChhhcc--cCCCccEEEEcC
Confidence 4579999999999999999985 36999999999999999999998876 4999999998742 236899999842
Q ss_pred CCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 275 PYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
... .|.+ .+....+++.+.++|||||+
T Consensus 114 ~~~-------------~~~~----------~~~~~~~l~~~~~~L~pgG~ 140 (252)
T 1wzn_A 114 STI-------------MYFD----------EEDLRKLFSKVAEALKPGGV 140 (252)
T ss_dssp SGG-------------GGSC----------HHHHHHHHHHHHHHEEEEEE
T ss_pred Cch-------------hcCC----------HHHHHHHHHHHHHHcCCCeE
Confidence 110 1100 23456789999999999994
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=1e-12 Score=121.48 Aligned_cols=104 Identities=13% Similarity=0.160 Sum_probs=80.3
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHc--CC--------CCcEEEEEcccccccccCC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRY--GL--------QDIIEIRQGSWFGKLKDVE 264 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~--gl--------~~rv~~~~gD~~~~l~~~~ 264 (324)
.+.+|||+|||+|.++..+++. +..+|+++|+|+.+++.|++|+ .. ++ .++++++.+|..+.+.. .
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~--~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~-~ 150 (281)
T 1mjf_A 75 KPKRVLVIGGGDGGTVREVLQH--DVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-N 150 (281)
T ss_dssp CCCEEEEEECTTSHHHHHHTTS--CCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-C
T ss_pred CCCeEEEEcCCcCHHHHHHHhC--CCCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHHhcc-c
Confidence 3579999999999999999986 5689999999999999999998 43 33 45799999998765543 4
Q ss_pred CCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 265 GKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 265 ~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
++||+|++|+|+.... .+ ++ ....+++.+.++|+|||+
T Consensus 151 ~~fD~Ii~d~~~~~~~------~~---------------~l-~~~~~l~~~~~~L~pgG~ 188 (281)
T 1mjf_A 151 RGFDVIIADSTDPVGP------AK---------------VL-FSEEFYRYVYDALNNPGI 188 (281)
T ss_dssp CCEEEEEEECCCCC--------------------------T-TSHHHHHHHHHHEEEEEE
T ss_pred CCeeEEEECCCCCCCc------ch---------------hh-hHHHHHHHHHHhcCCCcE
Confidence 7899999999863110 00 00 123678888999999985
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=2.1e-12 Score=115.46 Aligned_cols=105 Identities=17% Similarity=0.235 Sum_probs=78.4
Q ss_pred eeeeeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHH
Q 020573 161 LVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNA 240 (324)
Q Consensus 161 l~~~v~~~vliPrp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~ 240 (324)
....+..+..+..+ .++..+.+.+ ...++.+|||+|||+|.++..+++.. + .+|+++|+++.+++.|++|+
T Consensus 64 ~~~~~~~~~~~~~~---~~~~~~~~~l----~~~~~~~vLdiG~G~G~~~~~la~~~-~-~~v~~vD~~~~~~~~a~~~~ 134 (235)
T 1jg1_A 64 EPLPIPAGQTVSAP---HMVAIMLEIA----NLKPGMNILEVGTGSGWNAALISEIV-K-TDVYTIERIPELVEFAKRNL 134 (235)
T ss_dssp SCEECSTTCEECCH---HHHHHHHHHH----TCCTTCCEEEECCTTSHHHHHHHHHH-C-SCEEEEESCHHHHHHHHHHH
T ss_pred CCcccCCCceeccH---HHHHHHHHhc----CCCCCCEEEEEeCCcCHHHHHHHHHh-C-CEEEEEeCCHHHHHHHHHHH
Confidence 33344444444333 3444555554 23346799999999999999999986 4 79999999999999999999
Q ss_pred HHcCCCCcEEEEEcccccccccCCCCeeEEEEcCCC
Q 020573 241 QRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPY 276 (324)
Q Consensus 241 ~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNPPY 276 (324)
+.+++.+ +++..+|+...+.. .++||+|+++.+.
T Consensus 135 ~~~~~~~-v~~~~~d~~~~~~~-~~~fD~Ii~~~~~ 168 (235)
T 1jg1_A 135 ERAGVKN-VHVILGDGSKGFPP-KAPYDVIIVTAGA 168 (235)
T ss_dssp HHTTCCS-EEEEESCGGGCCGG-GCCEEEEEECSBB
T ss_pred HHcCCCC-cEEEECCcccCCCC-CCCccEEEECCcH
Confidence 9999876 99999998554443 2469999998553
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=3e-12 Score=116.67 Aligned_cols=103 Identities=11% Similarity=-0.006 Sum_probs=76.3
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHH----------cC------CCCcEEEEEccccc
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR----------YG------LQDIIEIRQGSWFG 258 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~----------~g------l~~rv~~~~gD~~~ 258 (324)
++.+|||+|||+|..+..||+. +.+|+|+|+|+.|++.|+++... .+ ...+++++++|+++
T Consensus 68 ~~~~vLD~GCG~G~~~~~La~~---G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~ 144 (252)
T 2gb4_A 68 SGLRVFFPLCGKAIEMKWFADR---GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFD 144 (252)
T ss_dssp CSCEEEETTCTTCTHHHHHHHT---TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTT
T ss_pred CCCeEEEeCCCCcHHHHHHHHC---CCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECcccc
Confidence 4679999999999999999986 36999999999999999876431 00 12469999999987
Q ss_pred ccccCCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 259 KLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 259 ~l~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
......++||+|+++--+. .++.+ ....+++++.++|||||+
T Consensus 145 l~~~~~~~FD~V~~~~~l~------~l~~~------------------~~~~~l~~~~~~LkpGG~ 186 (252)
T 2gb4_A 145 LPRANIGKFDRIWDRGALV------AINPG------------------DHDRYADIILSLLRKEFQ 186 (252)
T ss_dssp GGGGCCCCEEEEEESSSTT------TSCGG------------------GHHHHHHHHHHTEEEEEE
T ss_pred CCcccCCCEEEEEEhhhhh------hCCHH------------------HHHHHHHHHHHHcCCCeE
Confidence 4332126899999864432 11111 123678999999999994
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.34 E-value=5e-13 Score=129.87 Aligned_cols=80 Identities=19% Similarity=0.087 Sum_probs=69.0
Q ss_pred CCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHc--CCCCcEEEEEcccccccccC-CCCeeEEEE
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRY--GLQDIIEIRQGSWFGKLKDV-EGKLSGVVS 272 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~--gl~~rv~~~~gD~~~~l~~~-~~~fDlIVs 272 (324)
+.+|||+|||+|..++.+++. ..+|+|+|+|+.+++.|++|++.+ |+ ++++++++|+.+.+... .++||+|++
T Consensus 94 g~~VLDLgcG~G~~al~LA~~---g~~V~~VD~s~~~l~~Ar~N~~~~~~gl-~~i~~i~~Da~~~L~~~~~~~fDvV~l 169 (410)
T 3ll7_A 94 GTKVVDLTGGLGIDFIALMSK---ASQGIYIERNDETAVAARHNIPLLLNEG-KDVNILTGDFKEYLPLIKTFHPDYIYV 169 (410)
T ss_dssp TCEEEESSCSSSHHHHHHHTT---CSEEEEEESCHHHHHHHHHHHHHHSCTT-CEEEEEESCGGGSHHHHHHHCCSEEEE
T ss_pred CCEEEEeCCCchHHHHHHHhc---CCEEEEEECCHHHHHHHHHhHHHhccCC-CcEEEEECcHHHhhhhccCCCceEEEE
Confidence 679999999999999999885 379999999999999999999998 88 57999999998854421 248999999
Q ss_pred cCCCCCC
Q 020573 273 NPPYIPS 279 (324)
Q Consensus 273 NPPYi~~ 279 (324)
||||...
T Consensus 170 DPPrr~~ 176 (410)
T 3ll7_A 170 DPARRSG 176 (410)
T ss_dssp CCEEC--
T ss_pred CCCCcCC
Confidence 9999874
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.34 E-value=3.2e-12 Score=111.14 Aligned_cols=73 Identities=26% Similarity=0.338 Sum_probs=61.9
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNP 274 (324)
.+.+|||+|||+|.+++.+++. +..+|+|+|+|+.+++.|++|+. +++++++|+.+ ++ ++||+|++||
T Consensus 51 ~~~~vlD~gcG~G~~~~~l~~~--~~~~v~~vD~~~~~~~~a~~~~~------~~~~~~~d~~~-~~---~~~D~v~~~~ 118 (200)
T 1ne2_A 51 GGRSVIDAGTGNGILACGSYLL--GAESVTAFDIDPDAIETAKRNCG------GVNFMVADVSE-IS---GKYDTWIMNP 118 (200)
T ss_dssp BTSEEEEETCTTCHHHHHHHHT--TBSEEEEEESCHHHHHHHHHHCT------TSEEEECCGGG-CC---CCEEEEEECC
T ss_pred CCCEEEEEeCCccHHHHHHHHc--CCCEEEEEECCHHHHHHHHHhcC------CCEEEECcHHH-CC---CCeeEEEECC
Confidence 4679999999999999999986 34589999999999999999975 48999999987 32 6899999999
Q ss_pred CCCCC
Q 020573 275 PYIPS 279 (324)
Q Consensus 275 PYi~~ 279 (324)
||...
T Consensus 119 p~~~~ 123 (200)
T 1ne2_A 119 PFGSV 123 (200)
T ss_dssp CC---
T ss_pred Cchhc
Confidence 99754
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=6.5e-13 Score=118.92 Aligned_cols=107 Identities=16% Similarity=0.088 Sum_probs=80.0
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCC-HHHHHHH---HHHHHHcCCCCcEEEEEcccccccccCCCCeeEE
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLN-PLAAAVA---AFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGV 270 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis-~~al~~A---r~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlI 270 (324)
++.+|||+|||+|.+++.+++.. ++.+|+|+|+| +.+++.| +++++..++.+ +.++++|+.+......+.+|.|
T Consensus 24 ~~~~vLDiGCG~G~~~~~la~~~-~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~-v~~~~~d~~~l~~~~~d~v~~i 101 (225)
T 3p2e_A 24 FDRVHIDLGTGDGRNIYKLAIND-QNTFYIGIDPVKENLFDISKKIIKKPSKGGLSN-VVFVIAAAESLPFELKNIADSI 101 (225)
T ss_dssp CSEEEEEETCTTSHHHHHHHHTC-TTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSS-EEEECCBTTBCCGGGTTCEEEE
T ss_pred CCCEEEEEeccCcHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCC-eEEEEcCHHHhhhhccCeEEEE
Confidence 35689999999999999999864 78999999999 6666666 88888888764 9999999876422223679999
Q ss_pred EEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 271 VSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 271 VsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
++|+|+.. ....+ .. ....+++++.++|||||+
T Consensus 102 ~~~~~~~~------~~~~~-~~--------------~~~~~l~~~~r~LkpGG~ 134 (225)
T 3p2e_A 102 SILFPWGT------LLEYV-IK--------------PNRDILSNVADLAKKEAH 134 (225)
T ss_dssp EEESCCHH------HHHHH-HT--------------TCHHHHHHHHTTEEEEEE
T ss_pred EEeCCCcH------Hhhhh-hc--------------chHHHHHHHHHhcCCCcE
Confidence 99998642 00000 00 112578889999999994
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.33 E-value=8.8e-13 Score=117.43 Aligned_cols=100 Identities=14% Similarity=0.106 Sum_probs=79.8
Q ss_pred CCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcCC
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPP 275 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNPP 275 (324)
+.+|||+|||+|.++..+++ +..+|+|+|+|+.+++.|++++...+...+++++++|+.+... .++||+|+++..
T Consensus 67 ~~~vLDiGcG~G~~~~~l~~---~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--~~~fD~v~~~~~ 141 (235)
T 3lcc_A 67 LGRALVPGCGGGHDVVAMAS---PERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRP--TELFDLIFDYVF 141 (235)
T ss_dssp CEEEEEETCTTCHHHHHHCB---TTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCC--SSCEEEEEEESS
T ss_pred CCCEEEeCCCCCHHHHHHHh---CCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCC--CCCeeEEEEChh
Confidence 45999999999999999876 3579999999999999999999876666679999999988543 358999999754
Q ss_pred CCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 276 YIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 276 Yi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
+.. +++ +....+++++.++|||||+
T Consensus 142 l~~------~~~------------------~~~~~~l~~~~~~LkpgG~ 166 (235)
T 3lcc_A 142 FCA------IEP------------------EMRPAWAKSMYELLKPDGE 166 (235)
T ss_dssp TTT------SCG------------------GGHHHHHHHHHHHEEEEEE
T ss_pred hhc------CCH------------------HHHHHHHHHHHHHCCCCcE
Confidence 421 111 1234688999999999984
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.33 E-value=3.1e-12 Score=114.98 Aligned_cols=96 Identities=16% Similarity=0.025 Sum_probs=77.7
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEc
Q 020573 194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN 273 (324)
Q Consensus 194 ~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsN 273 (324)
.++.+|||+|||+|.++..+++.+ +..+|+|+|+|+.+++.|+++ ..+++++++|+.+.. ..++||+|++|
T Consensus 32 ~~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~~D~s~~~~~~a~~~------~~~~~~~~~d~~~~~--~~~~fD~v~~~ 102 (259)
T 2p35_A 32 ERVLNGYDLGCGPGNSTELLTDRY-GVNVITGIDSDDDMLEKAADR------LPNTNFGKADLATWK--PAQKADLLYAN 102 (259)
T ss_dssp SCCSSEEEETCTTTHHHHHHHHHH-CTTSEEEEESCHHHHHHHHHH------STTSEEEECCTTTCC--CSSCEEEEEEE
T ss_pred CCCCEEEEecCcCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHh------CCCcEEEECChhhcC--ccCCcCEEEEe
Confidence 356799999999999999999987 678999999999999999988 235999999997743 35789999997
Q ss_pred CCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 274 PPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
..+ .|-+ ....+++++.++|||||+
T Consensus 103 ~~l--------------~~~~------------~~~~~l~~~~~~L~pgG~ 127 (259)
T 2p35_A 103 AVF--------------QWVP------------DHLAVLSQLMDQLESGGV 127 (259)
T ss_dssp SCG--------------GGST------------THHHHHHHHGGGEEEEEE
T ss_pred Cch--------------hhCC------------CHHHHHHHHHHhcCCCeE
Confidence 432 2211 234688999999999984
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=2.7e-12 Score=117.82 Aligned_cols=123 Identities=18% Similarity=0.143 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCC---CcEEEE
Q 020573 176 TELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQ---DIIEIR 252 (324)
Q Consensus 176 te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~---~rv~~~ 252 (324)
++.+.+.+.+.+ .. .++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|++|+...+.. .++.+.
T Consensus 42 ~~~~~~~l~~~l-~~---~~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~ 114 (293)
T 3thr_A 42 TAEYKAWLLGLL-RQ---HGCHRVLDVACGTGVDSIMLVEE---GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIE 114 (293)
T ss_dssp CHHHHHHHHHHH-HH---TTCCEEEETTCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEE
T ss_pred HHHHHHHHHHHh-cc---cCCCEEEEecCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHhhhhcccccccceeeEe
Confidence 344555555555 21 24569999999999999999986 359999999999999999998654432 358899
Q ss_pred Ecccccccc--cCCCCeeEEEEc-CCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 253 QGSWFGKLK--DVEGKLSGVVSN-PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 253 ~gD~~~~l~--~~~~~fDlIVsN-PPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
.+|+.+... ...++||+|+++ .-+ .|-+.. ....+....+++++.++|||||+
T Consensus 115 ~~d~~~~~~~~~~~~~fD~V~~~g~~l--------------~~~~~~-----~~~~~~~~~~l~~~~~~LkpgG~ 170 (293)
T 3thr_A 115 EANWLTLDKDVPAGDGFDAVICLGNSF--------------AHLPDS-----KGDQSEHRLALKNIASMVRPGGL 170 (293)
T ss_dssp ECCGGGHHHHSCCTTCEEEEEECTTCG--------------GGSCCS-----SSSSHHHHHHHHHHHHTEEEEEE
T ss_pred ecChhhCccccccCCCeEEEEEcChHH--------------hhcCcc-----ccCHHHHHHHHHHHHHHcCCCeE
Confidence 999876320 124789999995 221 222210 01134456899999999999995
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=3.5e-12 Score=118.06 Aligned_cols=107 Identities=13% Similarity=0.163 Sum_probs=81.4
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcC--C-CCcEEEEEcccccccccCCCCeeEEE
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYG--L-QDIIEIRQGSWFGKLKDVEGKLSGVV 271 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~g--l-~~rv~~~~gD~~~~l~~~~~~fDlIV 271 (324)
.+.+|||+|||+|.++..+++.. +..+|+++|+|+.+++.|++++...+ + .++++++.+|..+.+....++||+|+
T Consensus 78 ~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 156 (283)
T 2i7c_A 78 EPKNVLVVGGGDGGIIRELCKYK-SVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 156 (283)
T ss_dssp SCCEEEEEECTTSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CCCeEEEEeCCcCHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEE
Confidence 45799999999999999999863 67899999999999999999976542 2 35799999999875543357899999
Q ss_pred EcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 272 SNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 272 sNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
+|++.... +.+ .+ .-..+++.+.++|||||+
T Consensus 157 ~d~~~~~~------~~~--------~l--------~~~~~l~~~~~~L~pgG~ 187 (283)
T 2i7c_A 157 VDSSDPIG------PAE--------TL--------FNQNFYEKIYNALKPNGY 187 (283)
T ss_dssp EECCCTTT------GGG--------GG--------SSHHHHHHHHHHEEEEEE
T ss_pred EcCCCCCC------cch--------hh--------hHHHHHHHHHHhcCCCcE
Confidence 98753210 000 00 013678888999999985
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.33 E-value=7e-12 Score=113.06 Aligned_cols=93 Identities=15% Similarity=0.085 Sum_probs=69.2
Q ss_pred HHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccc
Q 020573 179 MVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFG 258 (324)
Q Consensus 179 lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~ 258 (324)
+...++..+ ......++.+|||+|||+|.++..+|+..++.++|+|+|+++.+++...+.++.. .++.++++|...
T Consensus 61 la~~ll~~l-~~~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r---~nv~~i~~Da~~ 136 (232)
T 3id6_C 61 LAGAILKGL-KTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRR---PNIFPLLADARF 136 (232)
T ss_dssp HHHHHHTTC-SCCSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHC---TTEEEEECCTTC
T ss_pred HHHHHHhhh-hhcCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc---CCeEEEEccccc
Confidence 444444444 2223456789999999999999999998877899999999999986655555443 359999999876
Q ss_pred ccc--cCCCCeeEEEEcCC
Q 020573 259 KLK--DVEGKLSGVVSNPP 275 (324)
Q Consensus 259 ~l~--~~~~~fDlIVsNPP 275 (324)
+.. ...++||+|++|-+
T Consensus 137 ~~~~~~~~~~~D~I~~d~a 155 (232)
T 3id6_C 137 PQSYKSVVENVDVLYVDIA 155 (232)
T ss_dssp GGGTTTTCCCEEEEEECCC
T ss_pred chhhhccccceEEEEecCC
Confidence 432 23468999999854
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=1.4e-11 Score=117.94 Aligned_cols=102 Identities=20% Similarity=0.200 Sum_probs=84.1
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEc
Q 020573 194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN 273 (324)
Q Consensus 194 ~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsN 273 (324)
....+|||+|||+|.++..+++.+ |+.+++++|+ +.+++.|++++...++.+++++..+|++++++ ..||+|+++
T Consensus 201 ~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~p---~~~D~v~~~ 275 (369)
T 3gwz_A 201 SGAATAVDIGGGRGSLMAAVLDAF-PGLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFFETIP---DGADVYLIK 275 (369)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTTCCC---SSCSEEEEE
T ss_pred ccCcEEEEeCCCccHHHHHHHHHC-CCCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCCCCCC---CCceEEEhh
Confidence 346799999999999999999986 8899999999 99999999999999998899999999986544 279999995
Q ss_pred CCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 274 PPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
--. .+-+ -+....+++++.+.|||||+
T Consensus 276 ~vl--------------h~~~----------d~~~~~~L~~~~~~L~pgG~ 302 (369)
T 3gwz_A 276 HVL--------------HDWD----------DDDVVRILRRIATAMKPDSR 302 (369)
T ss_dssp SCG--------------GGSC----------HHHHHHHHHHHHTTCCTTCE
T ss_pred hhh--------------ccCC----------HHHHHHHHHHHHHHcCCCCE
Confidence 222 2211 12234789999999999994
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.33 E-value=6.4e-12 Score=114.15 Aligned_cols=83 Identities=16% Similarity=0.163 Sum_probs=69.2
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHH------HHHHHHHHHHHcCCCCcEEEEEcc-ccc-ccccCCC
Q 020573 194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPL------AAAVAAFNAQRYGLQDIIEIRQGS-WFG-KLKDVEG 265 (324)
Q Consensus 194 ~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~------al~~Ar~N~~~~gl~~rv~~~~gD-~~~-~l~~~~~ 265 (324)
.++.+|||+|||+|.++..+++..+++.+|+|+|+|+. +++.|+++++..++.++++++++| +.. .++...+
T Consensus 42 ~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~ 121 (275)
T 3bkx_A 42 KPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSDDLGPIADQ 121 (275)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTTTCCGGGTTC
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhhhccCCCCCC
Confidence 45679999999999999999998766689999999997 999999999988887789999998 432 1222247
Q ss_pred CeeEEEEcCCC
Q 020573 266 KLSGVVSNPPY 276 (324)
Q Consensus 266 ~fDlIVsNPPY 276 (324)
+||+|+++..+
T Consensus 122 ~fD~v~~~~~l 132 (275)
T 3bkx_A 122 HFDRVVLAHSL 132 (275)
T ss_dssp CCSEEEEESCG
T ss_pred CEEEEEEccch
Confidence 89999998665
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.32 E-value=3.1e-12 Score=113.46 Aligned_cols=88 Identities=20% Similarity=0.174 Sum_probs=70.5
Q ss_pred HHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccc
Q 020573 178 LMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWF 257 (324)
Q Consensus 178 ~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~ 257 (324)
.+++.+.+.+ ...++.+|||+|||+|.++..+++.. .+|+|+|+++.+++.|++|+..++ +++++++|+.
T Consensus 57 ~~~~~~~~~~----~~~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~~~---~v~~~~~d~~ 126 (231)
T 1vbf_A 57 NLGIFMLDEL----DLHKGQKVLEIGTGIGYYTALIAEIV---DKVVSVEINEKMYNYASKLLSYYN---NIKLILGDGT 126 (231)
T ss_dssp HHHHHHHHHT----TCCTTCEEEEECCTTSHHHHHHHHHS---SEEEEEESCHHHHHHHHHHHTTCS---SEEEEESCGG
T ss_pred HHHHHHHHhc----CCCCCCEEEEEcCCCCHHHHHHHHHc---CEEEEEeCCHHHHHHHHHHHhhcC---CeEEEECCcc
Confidence 3455555544 23356799999999999999999973 799999999999999999998776 5999999998
Q ss_pred cccccCCCCeeEEEEcCCC
Q 020573 258 GKLKDVEGKLSGVVSNPPY 276 (324)
Q Consensus 258 ~~l~~~~~~fDlIVsNPPY 276 (324)
+.+.. .++||+|+++.++
T Consensus 127 ~~~~~-~~~fD~v~~~~~~ 144 (231)
T 1vbf_A 127 LGYEE-EKPYDRVVVWATA 144 (231)
T ss_dssp GCCGG-GCCEEEEEESSBB
T ss_pred ccccc-CCCccEEEECCcH
Confidence 74432 3689999998654
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.32 E-value=6.2e-12 Score=112.64 Aligned_cols=101 Identities=11% Similarity=0.001 Sum_probs=79.3
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEc
Q 020573 194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN 273 (324)
Q Consensus 194 ~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsN 273 (324)
.++.+|||+|||+|.++..+++.. ..+|+|+|+|+.+++.|++++... .+++++++|+.+. ....++||+|+++
T Consensus 92 ~~~~~vLDiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~-~~~~~~fD~v~~~ 165 (254)
T 1xtp_A 92 HGTSRALDCGAGIGRITKNLLTKL--YATTDLLEPVKHMLEEAKRELAGM---PVGKFILASMETA-TLPPNTYDLIVIQ 165 (254)
T ss_dssp CCCSEEEEETCTTTHHHHHTHHHH--CSEEEEEESCHHHHHHHHHHTTTS---SEEEEEESCGGGC-CCCSSCEEEEEEE
T ss_pred cCCCEEEEECCCcCHHHHHHHHhh--cCEEEEEeCCHHHHHHHHHHhccC---CceEEEEccHHHC-CCCCCCeEEEEEc
Confidence 356799999999999999999874 468999999999999999987654 4699999998763 3234689999995
Q ss_pred CCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 274 PPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
-. ..|-+. +....+++++.++|||||+
T Consensus 166 ~~--------------l~~~~~----------~~~~~~l~~~~~~LkpgG~ 192 (254)
T 1xtp_A 166 WT--------------AIYLTD----------ADFVKFFKHCQQALTPNGY 192 (254)
T ss_dssp SC--------------GGGSCH----------HHHHHHHHHHHHHEEEEEE
T ss_pred ch--------------hhhCCH----------HHHHHHHHHHHHhcCCCeE
Confidence 32 222211 2355789999999999994
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.32 E-value=3.8e-12 Score=112.28 Aligned_cols=103 Identities=21% Similarity=0.232 Sum_probs=81.4
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCC----CcEEEEEcccccccccCCCCeeEE
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQ----DIIEIRQGSWFGKLKDVEGKLSGV 270 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~----~rv~~~~gD~~~~l~~~~~~fDlI 270 (324)
++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|++++...++. +++++..+|+.+. ....++||+|
T Consensus 30 ~~~~vLdiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~D~v 105 (235)
T 3sm3_A 30 EDDEILDIGCGSGKISLELASK---GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSL-SFHDSSFDFA 105 (235)
T ss_dssp TTCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSC-CSCTTCEEEE
T ss_pred CCCeEEEECCCCCHHHHHHHhC---CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEeccccc-CCCCCceeEE
Confidence 4669999999999999999986 469999999999999999999887763 3689999998763 3235789999
Q ss_pred EEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 271 VSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 271 VsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
+++..+. |-+. .+....+++++.++|||||+
T Consensus 106 ~~~~~l~--------------~~~~---------~~~~~~~l~~~~~~L~pgG~ 136 (235)
T 3sm3_A 106 VMQAFLT--------------SVPD---------PKERSRIIKEVFRVLKPGAY 136 (235)
T ss_dssp EEESCGG--------------GCCC---------HHHHHHHHHHHHHHEEEEEE
T ss_pred EEcchhh--------------cCCC---------HHHHHHHHHHHHHHcCCCeE
Confidence 9974432 2111 23344789999999999984
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.32 E-value=2.1e-12 Score=115.54 Aligned_cols=102 Identities=14% Similarity=0.012 Sum_probs=79.3
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNP 274 (324)
++.+|||+|||+|.++..+++.. ..+|+|+|+|+.+++.|++++...+ ..+++++++|+.+.. ...++||+|+++-
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~~d~~~~~-~~~~~fD~v~~~~ 154 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPL--FREVDMVDITEDFLVQAKTYLGEEG-KRVRNYFCCGLQDFT-PEPDSYDVIWIQW 154 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTT--CSEEEEEESCHHHHHHHHHHTGGGG-GGEEEEEECCGGGCC-CCSSCEEEEEEES
T ss_pred CCCEEEEECCCCCHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHhhhcC-CceEEEEEcChhhcC-CCCCCEEEEEEcc
Confidence 46799999999999999998863 4699999999999999999987765 235999999987633 2245899999962
Q ss_pred CCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 275 PYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
. ..|-+. ..+..+++++.++|||||+
T Consensus 155 ~--------------l~~~~~----------~~~~~~l~~~~~~LkpgG~ 180 (241)
T 2ex4_A 155 V--------------IGHLTD----------QHLAEFLRRCKGSLRPNGI 180 (241)
T ss_dssp C--------------GGGSCH----------HHHHHHHHHHHHHEEEEEE
T ss_pred h--------------hhhCCH----------HHHHHHHHHHHHhcCCCeE
Confidence 1 122221 1245789999999999994
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.32 E-value=3.1e-12 Score=113.61 Aligned_cols=114 Identities=17% Similarity=0.193 Sum_probs=81.3
Q ss_pred cccCeeeeeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCC-----CcEEEEEeCCHH
Q 020573 157 HWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGS-----KGSIIAVDLNPL 231 (324)
Q Consensus 157 ~f~~l~~~v~~~vliPrp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p-----~~~V~gvDis~~ 231 (324)
.|.+..+.+..+..+..|. ++..+++.+ .. ...++.+|||+|||+|.++..+++..+. ..+|+++|++++
T Consensus 51 ~y~d~~~~~~~~~~~~~p~---~~~~~~~~l-~~-~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~ 125 (227)
T 1r18_A 51 PYMDAPQPIGGGVTISAPH---MHAFALEYL-RD-HLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAE 125 (227)
T ss_dssp TTBSSCEEEETTEEECCHH---HHHHHHHHT-TT-TCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHH
T ss_pred cccCCCcccCCCCccCChH---HHHHHHHHH-Hh-hCCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHH
Confidence 4455555566665555543 233334433 10 1234679999999999999999997622 259999999999
Q ss_pred HHHHHHHHHHHcCC----CCcEEEEEcccccccccCCCCeeEEEEcCCC
Q 020573 232 AAAVAAFNAQRYGL----QDIIEIRQGSWFGKLKDVEGKLSGVVSNPPY 276 (324)
Q Consensus 232 al~~Ar~N~~~~gl----~~rv~~~~gD~~~~l~~~~~~fDlIVsNPPY 276 (324)
+++.|++|+..++. .++++++.+|..+.+.. .++||+|+++.+.
T Consensus 126 ~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~fD~I~~~~~~ 173 (227)
T 1r18_A 126 LVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPP-NAPYNAIHVGAAA 173 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGG-GCSEEEEEECSCB
T ss_pred HHHHHHHHHHhcCccccCCCceEEEECCcccCCCc-CCCccEEEECCch
Confidence 99999999988762 23599999999875443 3689999998664
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.31 E-value=6e-12 Score=111.75 Aligned_cols=116 Identities=16% Similarity=0.080 Sum_probs=86.9
Q ss_pred HHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccc
Q 020573 177 ELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSW 256 (324)
Q Consensus 177 e~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~ 256 (324)
+.+.+.+.+.+ ... ..++.+|||+|||+|.++..+++. ..+|+|+|+|+.+++.|++++...+. +++++++|+
T Consensus 21 ~~~~~~~~~~l-~~~-~~~~~~vLdiG~G~G~~~~~l~~~---~~~~~~~D~s~~~~~~a~~~~~~~~~--~~~~~~~d~ 93 (246)
T 1y8c_A 21 KKWSDFIIEKC-VEN-NLVFDDYLDLACGTGNLTENLCPK---FKNTWAVDLSQEMLSEAENKFRSQGL--KPRLACQDI 93 (246)
T ss_dssp HHHHHHHHHHH-HTT-TCCTTEEEEETCTTSTTHHHHGGG---SSEEEEECSCHHHHHHHHHHHHHTTC--CCEEECCCG
T ss_pred HHHHHHHHHHH-HHh-CCCCCeEEEeCCCCCHHHHHHHHC---CCcEEEEECCHHHHHHHHHHHhhcCC--CeEEEeccc
Confidence 34455555555 211 124679999999999999999886 36899999999999999999988876 599999998
Q ss_pred ccccccCCCCeeEEEEcC-CCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 257 FGKLKDVEGKLSGVVSNP-PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 257 ~~~l~~~~~~fDlIVsNP-PYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
.+... .++||+|+++. .+ .|-+. .+....+++++.++|||||+
T Consensus 94 ~~~~~--~~~fD~v~~~~~~l--------------~~~~~---------~~~~~~~l~~~~~~L~pgG~ 137 (246)
T 1y8c_A 94 SNLNI--NRKFDLITCCLDST--------------NYIID---------SDDLKKYFKAVSNHLKEGGV 137 (246)
T ss_dssp GGCCC--SCCEEEEEECTTGG--------------GGCCS---------HHHHHHHHHHHHTTEEEEEE
T ss_pred ccCCc--cCCceEEEEcCccc--------------cccCC---------HHHHHHHHHHHHHhcCCCcE
Confidence 77422 26899999964 21 22110 13456789999999999994
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.31 E-value=3.9e-12 Score=114.31 Aligned_cols=98 Identities=16% Similarity=0.109 Sum_probs=77.3
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEc
Q 020573 194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN 273 (324)
Q Consensus 194 ~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsN 273 (324)
.++.+|||+|||+|.++..+++.. . .+|+|+|+|+.+++.|++++. ..+++++++|+.+ ++...++||+|+++
T Consensus 43 ~~~~~vLD~GcG~G~~~~~l~~~~-~-~~v~~vD~s~~~~~~a~~~~~----~~~~~~~~~d~~~-~~~~~~~fD~v~~~ 115 (253)
T 3g5l_A 43 FNQKTVLDLGCGFGWHCIYAAEHG-A-KKVLGIDLSERMLTEAKRKTT----SPVVCYEQKAIED-IAIEPDAYNVVLSS 115 (253)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHTT-C-SEEEEEESCHHHHHHHHHHCC----CTTEEEEECCGGG-CCCCTTCEEEEEEE
T ss_pred cCCCEEEEECCCCCHHHHHHHHcC-C-CEEEEEECCHHHHHHHHHhhc----cCCeEEEEcchhh-CCCCCCCeEEEEEc
Confidence 357799999999999999999973 3 399999999999999998865 3469999999876 33335799999996
Q ss_pred CCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 274 PPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
-.+ .|-+ ....+++++.++|||||+
T Consensus 116 ~~l--------------~~~~------------~~~~~l~~~~~~LkpgG~ 140 (253)
T 3g5l_A 116 LAL--------------HYIA------------SFDDICKKVYINLKSSGS 140 (253)
T ss_dssp SCG--------------GGCS------------CHHHHHHHHHHHEEEEEE
T ss_pred hhh--------------hhhh------------hHHHHHHHHHHHcCCCcE
Confidence 321 2211 134788999999999994
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=99.31 E-value=5.4e-13 Score=122.16 Aligned_cols=81 Identities=19% Similarity=0.163 Sum_probs=68.7
Q ss_pred CCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCH-------HHHHHHHHHHHHcCCCCcEEEEEcccccccccCC---C
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNP-------LAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVE---G 265 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~-------~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~---~ 265 (324)
+.+|||+|||+|.+++.+|+. +++|+|+|+|+ ++++.|++|++.+++.++++++++|+.+.+.... +
T Consensus 84 ~~~VLDlgcG~G~~a~~lA~~---g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~~~~~ 160 (258)
T 2r6z_A 84 HPTVWDATAGLGRDSFVLASL---GLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVKTQG 160 (258)
T ss_dssp CCCEEETTCTTCHHHHHHHHT---TCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHHHHHC
T ss_pred cCeEEEeeCccCHHHHHHHHh---CCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhhccCC
Confidence 568999999999999999995 36899999999 9999999999998887789999999987544222 5
Q ss_pred CeeEEEEcCCCCCC
Q 020573 266 KLSGVVSNPPYIPS 279 (324)
Q Consensus 266 ~fDlIVsNPPYi~~ 279 (324)
+||+|++||||...
T Consensus 161 ~fD~V~~dP~~~~~ 174 (258)
T 2r6z_A 161 KPDIVYLDPMYPER 174 (258)
T ss_dssp CCSEEEECCCC---
T ss_pred CccEEEECCCCCCc
Confidence 89999999999653
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.31 E-value=1.1e-11 Score=107.51 Aligned_cols=95 Identities=25% Similarity=0.148 Sum_probs=77.8
Q ss_pred eEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcCCCC
Q 020573 198 FWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYI 277 (324)
Q Consensus 198 ~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNPPYi 277 (324)
+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|++++...+. ++.++++|+.+. ....++||+|+++..+.
T Consensus 32 ~vLdiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~-~~~~~~fD~v~~~~~~~ 105 (202)
T 2kw5_A 32 KILCLAEGEGRNACFLASL---GYEVTAVDQSSVGLAKAKQLAQEKGV--KITTVQSNLADF-DIVADAWEGIVSIFCHL 105 (202)
T ss_dssp EEEECCCSCTHHHHHHHTT---TCEEEEECSSHHHHHHHHHHHHHHTC--CEEEECCBTTTB-SCCTTTCSEEEEECCCC
T ss_pred CEEEECCCCCHhHHHHHhC---CCeEEEEECCHHHHHHHHHHHHhcCC--ceEEEEcChhhc-CCCcCCccEEEEEhhcC
Confidence 9999999999999999885 36999999999999999999998876 599999998764 22246899999963221
Q ss_pred CCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 278 PSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 278 ~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
+ .+....+++++.+.|||||+
T Consensus 106 ----------------~----------~~~~~~~l~~~~~~L~pgG~ 126 (202)
T 2kw5_A 106 ----------------P----------SSLRQQLYPKVYQGLKPGGV 126 (202)
T ss_dssp ----------------C----------HHHHHHHHHHHHTTCCSSEE
T ss_pred ----------------C----------HHHHHHHHHHHHHhcCCCcE
Confidence 0 23345789999999999994
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.31 E-value=3.7e-12 Score=110.78 Aligned_cols=113 Identities=12% Similarity=0.076 Sum_probs=82.3
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNP 274 (324)
++.+|||+|||+|.++..+++. ++ .+|+|+|+|+.+++.|++++.. ..+++++++|+.+. ....++||+|++|+
T Consensus 42 ~~~~vLdiGcG~G~~~~~l~~~-~~-~~v~~~D~s~~~~~~a~~~~~~---~~~i~~~~~d~~~~-~~~~~~fD~v~~~~ 115 (215)
T 2pxx_A 42 PEDRILVLGCGNSALSYELFLG-GF-PNVTSVDYSSVVVAAMQACYAH---VPQLRWETMDVRKL-DFPSASFDVVLEKG 115 (215)
T ss_dssp TTCCEEEETCTTCSHHHHHHHT-TC-CCEEEEESCHHHHHHHHHHTTT---CTTCEEEECCTTSC-CSCSSCEEEEEEES
T ss_pred CCCeEEEECCCCcHHHHHHHHc-CC-CcEEEEeCCHHHHHHHHHhccc---CCCcEEEEcchhcC-CCCCCcccEEEECc
Confidence 4568999999999999999987 23 3899999999999999999764 24699999998773 22246899999998
Q ss_pred CCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 275 PYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
++.. +. ..+.. .........+....+++++.++|||||+
T Consensus 116 ~~~~------~~---~~~~~--~~~~~~~~~~~~~~~l~~~~~~LkpgG~ 154 (215)
T 2pxx_A 116 TLDA------LL---AGERD--PWTVSSEGVHTVDQVLSEVSRVLVPGGR 154 (215)
T ss_dssp HHHH------HT---TTCSC--TTSCCHHHHHHHHHHHHHHHHHEEEEEE
T ss_pred chhh------hc---ccccc--ccccccchhHHHHHHHHHHHHhCcCCCE
Confidence 7621 00 00000 0001112355677899999999999994
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=4.9e-12 Score=116.96 Aligned_cols=101 Identities=15% Similarity=0.083 Sum_probs=79.1
Q ss_pred CCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCC--CcEEEEEcccccccccCCCCeeEEEEc
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQ--DIIEIRQGSWFGKLKDVEGKLSGVVSN 273 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~--~rv~~~~gD~~~~l~~~~~~fDlIVsN 273 (324)
+.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|++++...++. .+++++++|+.+. +. .++||+|++.
T Consensus 83 ~~~vLDlGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~-~~-~~~fD~v~~~ 157 (299)
T 3g2m_A 83 SGPVLELAAGMGRLTFPFLDL---GWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAF-AL-DKRFGTVVIS 157 (299)
T ss_dssp CSCEEEETCTTTTTHHHHHTT---TCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBC-CC-SCCEEEEEEC
T ss_pred CCcEEEEeccCCHHHHHHHHc---CCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcC-Cc-CCCcCEEEEC
Confidence 448999999999999999986 368999999999999999999877642 5699999999873 22 5799999963
Q ss_pred CCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 274 PPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
..+..|-+ -+....+++++.++|||||+
T Consensus 158 -------------~~~~~~~~----------~~~~~~~l~~~~~~L~pgG~ 185 (299)
T 3g2m_A 158 -------------SGSINELD----------EADRRGLYASVREHLEPGGK 185 (299)
T ss_dssp -------------HHHHTTSC----------HHHHHHHHHHHHHHEEEEEE
T ss_pred -------------CcccccCC----------HHHHHHHHHHHHHHcCCCcE
Confidence 11112211 13455789999999999994
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.4e-11 Score=115.28 Aligned_cols=102 Identities=19% Similarity=0.117 Sum_probs=82.9
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNP 274 (324)
++.+|||+|||+|.++..+++.+ ++.+++++|++ .+++.|++++...++.++++++.+|+++. . ..+.||+|+++-
T Consensus 165 ~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~-~~~~~D~v~~~~ 240 (335)
T 2r3s_A 165 EPLKVLDISASHGLFGIAVAQHN-PNAEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFEV-D-YGNDYDLVLLPN 240 (335)
T ss_dssp CCSEEEEETCTTCHHHHHHHHHC-TTCEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTS-C-CCSCEEEEEEES
T ss_pred CCCEEEEECCCcCHHHHHHHHHC-CCCeEEEEecH-HHHHHHHHHHHhcCCCcceEEEecccccC-C-CCCCCcEEEEcc
Confidence 46799999999999999999986 77899999999 99999999999999888899999999873 1 223599999952
Q ss_pred CCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 275 PYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
.. .|-+ -+....+++++.+.|||||+
T Consensus 241 ~l--------------~~~~----------~~~~~~~l~~~~~~L~pgG~ 266 (335)
T 2r3s_A 241 FL--------------HHFD----------VATCEQLLRKIKTALAVEGK 266 (335)
T ss_dssp CG--------------GGSC----------HHHHHHHHHHHHHHEEEEEE
T ss_pred hh--------------ccCC----------HHHHHHHHHHHHHhCCCCcE
Confidence 22 1111 12345788999999999983
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.30 E-value=4.5e-12 Score=110.22 Aligned_cols=101 Identities=16% Similarity=0.098 Sum_probs=77.4
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNP 274 (324)
++.+|||+|||+|.+++.++.. ++.+|+|+|+|+.+++.|++++...+. +++++++|+.+. +...++||+|+++-
T Consensus 23 ~~~~vLDiGcG~G~~~~~~~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~-~~~~~~fD~v~~~~ 97 (209)
T 2p8j_A 23 LDKTVLDCGAGGDLPPLSIFVE--DGYKTYGIEISDLQLKKAENFSRENNF--KLNISKGDIRKL-PFKDESMSFVYSYG 97 (209)
T ss_dssp SCSEEEEESCCSSSCTHHHHHH--TTCEEEEEECCHHHHHHHHHHHHHHTC--CCCEEECCTTSC-CSCTTCEEEEEECS
T ss_pred CCCEEEEECCCCCHHHHHHHHh--CCCEEEEEECCHHHHHHHHHHHHhcCC--ceEEEECchhhC-CCCCCceeEEEEcC
Confidence 3579999999999986555554 357999999999999999999988763 589999998763 32246899999963
Q ss_pred CCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 275 PYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
.. .|-+ .+....+++++.++|||||+
T Consensus 98 ~l--------------~~~~----------~~~~~~~l~~~~~~LkpgG~ 123 (209)
T 2p8j_A 98 TI--------------FHMR----------KNDVKEAIDEIKRVLKPGGL 123 (209)
T ss_dssp CG--------------GGSC----------HHHHHHHHHHHHHHEEEEEE
T ss_pred hH--------------HhCC----------HHHHHHHHHHHHHHcCCCcE
Confidence 21 2211 13455789999999999995
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=2.4e-12 Score=120.91 Aligned_cols=110 Identities=15% Similarity=0.122 Sum_probs=82.9
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHH--cC-C-CCcEEEEEcccccccccCCCCeeEE
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR--YG-L-QDIIEIRQGSWFGKLKDVEGKLSGV 270 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~--~g-l-~~rv~~~~gD~~~~l~~~~~~fDlI 270 (324)
.+.+|||+|||+|.++..+++.. +..+|+++|+|+.+++.|++|+.. .+ + .++++++.+|..+.+....++||+|
T Consensus 77 ~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I 155 (314)
T 1uir_A 77 EPKRVLIVGGGEGATLREVLKHP-TVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV 155 (314)
T ss_dssp CCCEEEEEECTTSHHHHHHTTST-TCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred CCCeEEEEcCCcCHHHHHHHhcC-CCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEE
Confidence 35799999999999999999874 668999999999999999999865 22 2 4579999999987554345789999
Q ss_pred EEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 271 VSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 271 VsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
++|++.... .. .|...+ ....+++.+.++|||||+
T Consensus 156 i~d~~~~~~--~~---------~~~~~l--------~~~~~l~~~~~~LkpgG~ 190 (314)
T 1uir_A 156 IIDLTDPVG--ED---------NPARLL--------YTVEFYRLVKAHLNPGGV 190 (314)
T ss_dssp EEECCCCBS--TT---------CGGGGG--------SSHHHHHHHHHTEEEEEE
T ss_pred EECCCCccc--cc---------Ccchhc--------cHHHHHHHHHHhcCCCcE
Confidence 999775210 00 000000 124688899999999995
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=8.1e-12 Score=118.95 Aligned_cols=102 Identities=21% Similarity=0.191 Sum_probs=83.5
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEc
Q 020573 194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN 273 (324)
Q Consensus 194 ~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsN 273 (324)
.++.+|||+|||+|.++..+++.+ ++.+++++|+ +.+++.|++|+..+++.++++++.+|+++.++ ..||+|+++
T Consensus 181 ~~~~~vlDvG~G~G~~~~~l~~~~-~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~---~~~D~v~~~ 255 (374)
T 1qzz_A 181 SAVRHVLDVGGGNGGMLAAIALRA-PHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKPLP---VTADVVLLS 255 (374)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCCS---CCEEEEEEE
T ss_pred CCCCEEEEECCCcCHHHHHHHHHC-CCCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCcCC---CCCCEEEEe
Confidence 346799999999999999999986 7889999999 99999999999999998889999999987554 359999996
Q ss_pred CCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 274 PPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
..+. |-+ -.....+++++.+.|||||+
T Consensus 256 ~vl~--------------~~~----------~~~~~~~l~~~~~~L~pgG~ 282 (374)
T 1qzz_A 256 FVLL--------------NWS----------DEDALTILRGCVRALEPGGR 282 (374)
T ss_dssp SCGG--------------GSC----------HHHHHHHHHHHHHHEEEEEE
T ss_pred cccc--------------CCC----------HHHHHHHHHHHHHhcCCCcE
Confidence 4322 111 11234688999999999984
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.8e-12 Score=118.58 Aligned_cols=103 Identities=15% Similarity=0.110 Sum_probs=76.7
Q ss_pred HHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccc
Q 020573 178 LMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWF 257 (324)
Q Consensus 178 ~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~ 257 (324)
.+++.+.+.. ....+|||+|||+|.++..+++.. .+|+|+|+|+.|++.|+++ .+++++++|+.
T Consensus 28 ~l~~~l~~~~------~~~~~vLDvGcGtG~~~~~l~~~~---~~v~gvD~s~~ml~~a~~~-------~~v~~~~~~~e 91 (257)
T 4hg2_A 28 ALFRWLGEVA------PARGDALDCGCGSGQASLGLAEFF---ERVHAVDPGEAQIRQALRH-------PRVTYAVAPAE 91 (257)
T ss_dssp HHHHHHHHHS------SCSSEEEEESCTTTTTHHHHHTTC---SEEEEEESCHHHHHTCCCC-------TTEEEEECCTT
T ss_pred HHHHHHHHhc------CCCCCEEEEcCCCCHHHHHHHHhC---CEEEEEeCcHHhhhhhhhc-------CCceeehhhhh
Confidence 3556655543 134689999999999999999864 6999999999999887642 35999999987
Q ss_pred cccccCCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 258 GKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 258 ~~l~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
+ ++..+++||+|+++-- .+|-+ ...+++++.++|||||+
T Consensus 92 ~-~~~~~~sfD~v~~~~~--------------~h~~~-------------~~~~~~e~~rvLkpgG~ 130 (257)
T 4hg2_A 92 D-TGLPPASVDVAIAAQA--------------MHWFD-------------LDRFWAELRRVARPGAV 130 (257)
T ss_dssp C-CCCCSSCEEEEEECSC--------------CTTCC-------------HHHHHHHHHHHEEEEEE
T ss_pred h-hcccCCcccEEEEeee--------------hhHhh-------------HHHHHHHHHHHcCCCCE
Confidence 6 3333579999999521 12211 12578899999999994
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.29 E-value=6.3e-12 Score=117.28 Aligned_cols=89 Identities=15% Similarity=0.262 Sum_probs=68.4
Q ss_pred HHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccc
Q 020573 179 MVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFG 258 (324)
Q Consensus 179 lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~ 258 (324)
+++.+.+.+ ...++.+|||+|||+|.++..+++. ..+|+|+|+|+.+++.|++|++.+++ ++++++++|+.+
T Consensus 30 i~~~i~~~~----~~~~~~~VLDiG~G~G~lt~~La~~---~~~v~~vDi~~~~~~~a~~~~~~~~~-~~v~~~~~D~~~ 101 (299)
T 2h1r_A 30 ILDKIIYAA----KIKSSDIVLEIGCGTGNLTVKLLPL---AKKVITIDIDSRMISEVKKRCLYEGY-NNLEVYEGDAIK 101 (299)
T ss_dssp HHHHHHHHH----CCCTTCEEEEECCTTSTTHHHHTTT---SSEEEEECSCHHHHHHHHHHHHHTTC-CCEEC----CCS
T ss_pred HHHHHHHhc----CCCCcCEEEEEcCcCcHHHHHHHhc---CCEEEEEECCHHHHHHHHHHHHHcCC-CceEEEECchhh
Confidence 344444444 2234679999999999999999885 36999999999999999999988887 469999999977
Q ss_pred ccccCCCCeeEEEEcCCCCC
Q 020573 259 KLKDVEGKLSGVVSNPPYIP 278 (324)
Q Consensus 259 ~l~~~~~~fDlIVsNPPYi~ 278 (324)
.. .++||+|++||||.-
T Consensus 102 ~~---~~~~D~Vv~n~py~~ 118 (299)
T 2h1r_A 102 TV---FPKFDVCTANIPYKI 118 (299)
T ss_dssp SC---CCCCSEEEEECCGGG
T ss_pred CC---cccCCEEEEcCCccc
Confidence 42 248999999999963
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.3e-11 Score=117.90 Aligned_cols=104 Identities=12% Similarity=0.066 Sum_probs=83.3
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNP 274 (324)
...+|||+|||+|.++..+++.+ |+.+|+++|+ +.+++.|++++...++.++++++.+|+++......+.||+|+++-
T Consensus 179 ~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p~~~D~v~~~~ 256 (363)
T 3dp7_A 179 HPKRLLDIGGNTGKWATQCVQYN-KEVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFPTGFDAVWMSQ 256 (363)
T ss_dssp CCSEEEEESCTTCHHHHHHHHHS-TTCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCCCCCSEEEEES
T ss_pred CCCEEEEeCCCcCHHHHHHHHhC-CCCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccccccCCCCCCCcCEEEEec
Confidence 35699999999999999999986 8899999999 999999999999888888899999999874201125899999952
Q ss_pred CCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 275 PYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
+..+-+ -+....+++++.+.|||||+
T Consensus 257 --------------vlh~~~----------~~~~~~~l~~~~~~L~pgG~ 282 (363)
T 3dp7_A 257 --------------FLDCFS----------EEEVISILTRVAQSIGKDSK 282 (363)
T ss_dssp --------------CSTTSC----------HHHHHHHHHHHHHHCCTTCE
T ss_pred --------------hhhhCC----------HHHHHHHHHHHHHhcCCCcE
Confidence 111111 12345789999999999994
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.29 E-value=6.2e-12 Score=112.40 Aligned_cols=111 Identities=17% Similarity=0.095 Sum_probs=80.9
Q ss_pred hHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEc
Q 020573 175 ETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQG 254 (324)
Q Consensus 175 ~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~g 254 (324)
..+.+.+.+...+ .. ..++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|+++ ++++.+
T Consensus 24 ~~~~~~~~~~~~l-~~--~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~---------~~~~~~ 88 (240)
T 3dli_A 24 SRELVKARLRRYI-PY--FKGCRRVLDIGCGRGEFLELCKEE---GIESIGVDINEDMIKFCEGK---------FNVVKS 88 (240)
T ss_dssp CHHHHHHHHGGGG-GG--TTTCSCEEEETCTTTHHHHHHHHH---TCCEEEECSCHHHHHHHHTT---------SEEECS
T ss_pred CHHHHHHHHHHHH-hh--hcCCCeEEEEeCCCCHHHHHHHhC---CCcEEEEECCHHHHHHHHhh---------cceeec
Confidence 3455556555554 21 224579999999999999999986 35899999999999999876 788889
Q ss_pred cccccc-ccCCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 255 SWFGKL-KDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 255 D~~~~l-~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
|..+.+ +...++||+|+++ .+..|-+. ..+..+++++.++|||||+
T Consensus 89 d~~~~~~~~~~~~fD~i~~~--------------~~l~~~~~----------~~~~~~l~~~~~~LkpgG~ 135 (240)
T 3dli_A 89 DAIEYLKSLPDKYLDGVMIS--------------HFVEHLDP----------ERLFELLSLCYSKMKYSSY 135 (240)
T ss_dssp CHHHHHHTSCTTCBSEEEEE--------------SCGGGSCG----------GGHHHHHHHHHHHBCTTCC
T ss_pred cHHHHhhhcCCCCeeEEEEC--------------CchhhCCc----------HHHHHHHHHHHHHcCCCcE
Confidence 987643 2224789999995 22233221 1234789999999999995
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.29 E-value=6e-12 Score=118.41 Aligned_cols=104 Identities=13% Similarity=0.011 Sum_probs=80.1
Q ss_pred CeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccC-CCCeeEEEEcCC
Q 020573 197 GFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDV-EGKLSGVVSNPP 275 (324)
Q Consensus 197 ~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~-~~~fDlIVsNPP 275 (324)
.+|||||||+|.++..+++.+ ++.+|++||+++.+++.|++++.... ..+++++.+|..+.+... .++||+|++|.+
T Consensus 91 ~rVLdIG~G~G~la~~la~~~-p~~~v~~VEidp~vi~~Ar~~~~~~~-~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~ 168 (317)
T 3gjy_A 91 LRITHLGGGACTMARYFADVY-PQSRNTVVELDAELARLSREWFDIPR-APRVKIRVDDARMVAESFTPASRDVIIRDVF 168 (317)
T ss_dssp CEEEEESCGGGHHHHHHHHHS-TTCEEEEEESCHHHHHHHHHHSCCCC-TTTEEEEESCHHHHHHTCCTTCEEEEEECCS
T ss_pred CEEEEEECCcCHHHHHHHHHC-CCcEEEEEECCHHHHHHHHHhccccC-CCceEEEECcHHHHHhhccCCCCCEEEECCC
Confidence 489999999999999999976 77899999999999999999875432 357999999998765432 468999999854
Q ss_pred CCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 276 YIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 276 Yi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
..... +. .|. ...+++.+.++|||||+
T Consensus 169 ~~~~~------~~--------~L~--------t~efl~~~~r~LkpgGv 195 (317)
T 3gjy_A 169 AGAIT------PQ--------NFT--------TVEFFEHCHRGLAPGGL 195 (317)
T ss_dssp TTSCC------CG--------GGS--------BHHHHHHHHHHEEEEEE
T ss_pred Ccccc------ch--------hhh--------HHHHHHHHHHhcCCCcE
Confidence 32100 00 000 13688889999999995
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.29 E-value=7.6e-12 Score=114.35 Aligned_cols=89 Identities=20% Similarity=0.259 Sum_probs=69.7
Q ss_pred HHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccc
Q 020573 179 MVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFG 258 (324)
Q Consensus 179 lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~ 258 (324)
+++.+.+.+ ...++.+|||+|||+|.++..+++.. .+|+|+|+|+.+++.+++++.. .++++++++|+.+
T Consensus 17 i~~~iv~~~----~~~~~~~VLEIG~G~G~lt~~La~~~---~~V~avEid~~~~~~~~~~~~~---~~~v~~i~~D~~~ 86 (255)
T 3tqs_A 17 VLQKIVSAI----HPQKTDTLVEIGPGRGALTDYLLTEC---DNLALVEIDRDLVAFLQKKYNQ---QKNITIYQNDALQ 86 (255)
T ss_dssp HHHHHHHHH----CCCTTCEEEEECCTTTTTHHHHTTTS---SEEEEEECCHHHHHHHHHHHTT---CTTEEEEESCTTT
T ss_pred HHHHHHHhc----CCCCcCEEEEEcccccHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHhh---CCCcEEEEcchHh
Confidence 445555554 23356799999999999999999863 7999999999999999999865 2469999999987
Q ss_pred c-cccC--CCCeeEEEEcCCCCC
Q 020573 259 K-LKDV--EGKLSGVVSNPPYIP 278 (324)
Q Consensus 259 ~-l~~~--~~~fDlIVsNPPYi~ 278 (324)
. +... .++|| ||+||||..
T Consensus 87 ~~~~~~~~~~~~~-vv~NlPY~i 108 (255)
T 3tqs_A 87 FDFSSVKTDKPLR-VVGNLPYNI 108 (255)
T ss_dssp CCGGGSCCSSCEE-EEEECCHHH
T ss_pred CCHHHhccCCCeE-EEecCCccc
Confidence 4 2222 24688 999999953
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.9e-11 Score=108.57 Aligned_cols=111 Identities=13% Similarity=0.021 Sum_probs=83.1
Q ss_pred HHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccc
Q 020573 178 LMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWF 257 (324)
Q Consensus 178 ~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~ 257 (324)
.+.+.+...+ .++.+|||+|||+|.++..+++. .+|+|+|+|+.+++.|++++...+ .+++++++|+.
T Consensus 22 ~~~~~~~~~~------~~~~~vLdiG~G~G~~~~~l~~~----~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~d~~ 89 (243)
T 3d2l_A 22 EWVAWVLEQV------EPGKRIADIGCGTGTATLLLADH----YEVTGVDLSEEMLEIAQEKAMETN--RHVDFWVQDMR 89 (243)
T ss_dssp HHHHHHHHHS------CTTCEEEEESCTTCHHHHHHTTT----SEEEEEESCHHHHHHHHHHHHHTT--CCCEEEECCGG
T ss_pred HHHHHHHHHc------CCCCeEEEecCCCCHHHHHHhhC----CeEEEEECCHHHHHHHHHhhhhcC--CceEEEEcChh
Confidence 3445555544 12469999999999999988874 699999999999999999998876 35999999987
Q ss_pred cccccCCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 258 GKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 258 ~~l~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
+... .++||+|+++.. +..|-+ ..+....+++++.++|||||+
T Consensus 90 ~~~~--~~~fD~v~~~~~-------------~~~~~~---------~~~~~~~~l~~~~~~L~pgG~ 132 (243)
T 3d2l_A 90 ELEL--PEPVDAITILCD-------------SLNYLQ---------TEADVKQTFDSAARLLTDGGK 132 (243)
T ss_dssp GCCC--SSCEEEEEECTT-------------GGGGCC---------SHHHHHHHHHHHHHHEEEEEE
T ss_pred hcCC--CCCcCEEEEeCC-------------chhhcC---------CHHHHHHHHHHHHHhcCCCeE
Confidence 6422 368999999631 112211 023455789999999999994
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.29 E-value=8.8e-12 Score=112.09 Aligned_cols=98 Identities=18% Similarity=0.255 Sum_probs=76.6
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNP 274 (324)
++.+|||+|||+|.++..+++. ..+|+|+|+|+.+++.|++++ . +...+++++++|+.+ ++...++||+|+++-
T Consensus 39 ~~~~vLDiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~-~-~~~~~~~~~~~d~~~-~~~~~~~fD~v~~~~ 112 (263)
T 2yqz_A 39 EEPVFLELGVGTGRIALPLIAR---GYRYIALDADAAMLEVFRQKI-A-GVDRKVQVVQADARA-IPLPDESVHGVIVVH 112 (263)
T ss_dssp SCCEEEEETCTTSTTHHHHHTT---TCEEEEEESCHHHHHHHHHHT-T-TSCTTEEEEESCTTS-CCSCTTCEEEEEEES
T ss_pred CCCEEEEeCCcCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHh-h-ccCCceEEEEccccc-CCCCCCCeeEEEECC
Confidence 4679999999999999999985 379999999999999999998 2 333569999999976 332346899999963
Q ss_pred CCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 275 PYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
.+ .|-+ ....+++++.++|||||+
T Consensus 113 ~l--------------~~~~------------~~~~~l~~~~~~L~pgG~ 136 (263)
T 2yqz_A 113 LW--------------HLVP------------DWPKVLAEAIRVLKPGGA 136 (263)
T ss_dssp CG--------------GGCT------------THHHHHHHHHHHEEEEEE
T ss_pred ch--------------hhcC------------CHHHHHHHHHHHCCCCcE
Confidence 32 2211 124688899999999984
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=9e-12 Score=112.70 Aligned_cols=97 Identities=16% Similarity=0.106 Sum_probs=76.0
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNP 274 (324)
++.+|||+|||+|.++..+++.. .+|+|+|+|+.+++.|++++. +++++++|+.+... .++||+|+++.
T Consensus 50 ~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~~~~------~~~~~~~d~~~~~~--~~~fD~v~~~~ 118 (263)
T 3pfg_A 50 KAASLLDVACGTGMHLRHLADSF---GTVEGLELSADMLAIARRRNP------DAVLHHGDMRDFSL--GRRFSAVTCMF 118 (263)
T ss_dssp TCCEEEEETCTTSHHHHHHTTTS---SEEEEEESCHHHHHHHHHHCT------TSEEEECCTTTCCC--SCCEEEEEECT
T ss_pred CCCcEEEeCCcCCHHHHHHHHcC---CeEEEEECCHHHHHHHHhhCC------CCEEEECChHHCCc--cCCcCEEEEcC
Confidence 35799999999999999998863 689999999999999998843 59999999987422 47999999963
Q ss_pred CCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 275 PYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
. +..|-+. .+....+++++.++|||||+
T Consensus 119 ~-------------~l~~~~~---------~~~~~~~l~~~~~~L~pgG~ 146 (263)
T 3pfg_A 119 S-------------SIGHLAG---------QAELDAALERFAAHVLPDGV 146 (263)
T ss_dssp T-------------GGGGSCH---------HHHHHHHHHHHHHTEEEEEE
T ss_pred c-------------hhhhcCC---------HHHHHHHHHHHHHhcCCCcE
Confidence 1 1122111 23455789999999999995
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=5.6e-12 Score=117.93 Aligned_cols=93 Identities=18% Similarity=0.223 Sum_probs=75.2
Q ss_pred HHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccc
Q 020573 178 LMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWF 257 (324)
Q Consensus 178 ~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~ 257 (324)
.+++.+++.+ ...++.+|||+|||+|.+++.+++.+ ++++|+|+|+|+.|++.|++|++.++ ++++++++|+.
T Consensus 13 vLl~e~l~~L----~~~~g~~vLD~g~G~G~~s~~la~~~-~~~~VigvD~d~~al~~A~~~~~~~g--~~v~~v~~d~~ 85 (301)
T 1m6y_A 13 VMVREVIEFL----KPEDEKIILDCTVGEGGHSRAILEHC-PGCRIIGIDVDSEVLRIAEEKLKEFS--DRVSLFKVSYR 85 (301)
T ss_dssp TTHHHHHHHH----CCCTTCEEEETTCTTSHHHHHHHHHC-TTCEEEEEESCHHHHHHHHHHTGGGT--TTEEEEECCGG
T ss_pred HHHHHHHHhc----CCCCCCEEEEEeCCcCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEECCHH
Confidence 3556666666 23356799999999999999999986 57899999999999999999998887 57999999986
Q ss_pred ccc---ccC-CCCeeEEEEcCCCC
Q 020573 258 GKL---KDV-EGKLSGVVSNPPYI 277 (324)
Q Consensus 258 ~~l---~~~-~~~fDlIVsNPPYi 277 (324)
+.. ... .++||.|++||||.
T Consensus 86 ~l~~~l~~~g~~~~D~Vl~D~gvS 109 (301)
T 1m6y_A 86 EADFLLKTLGIEKVDGILMDLGVS 109 (301)
T ss_dssp GHHHHHHHTTCSCEEEEEEECSCC
T ss_pred HHHHHHHhcCCCCCCEEEEcCccc
Confidence 531 111 14799999999974
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=8.1e-12 Score=104.59 Aligned_cols=103 Identities=23% Similarity=0.241 Sum_probs=75.3
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccc-----c--cCCCCe
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKL-----K--DVEGKL 267 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l-----~--~~~~~f 267 (324)
++.+|||+|||+|.++..+++.++++.+|+|+|+++ +++. .++++.++|+.+.. . ...++|
T Consensus 22 ~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~-----------~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 89 (180)
T 1ej0_A 22 PGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI-----------VGVDFLQGDFRDELVMKALLERVGDSKV 89 (180)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC-----------TTEEEEESCTTSHHHHHHHHHHHTTCCE
T ss_pred CCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc-----------CcEEEEEcccccchhhhhhhccCCCCce
Confidence 467999999999999999999875668999999998 6532 35999999998741 0 123689
Q ss_pred eEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 268 SGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 268 DlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
|+|++|+|+...... ..+.. ........+++.+.++|+|||+
T Consensus 90 D~i~~~~~~~~~~~~---~~~~~------------~~~~~~~~~l~~~~~~L~~gG~ 131 (180)
T 1ej0_A 90 QVVMSDMAPNMSGTP---AVDIP------------RAMYLVELALEMCRDVLAPGGS 131 (180)
T ss_dssp EEEEECCCCCCCSCH---HHHHH------------HHHHHHHHHHHHHHHHEEEEEE
T ss_pred eEEEECCCccccCCC---ccchH------------HHHHHHHHHHHHHHHHcCCCcE
Confidence 999999998643321 00000 0022346789999999999984
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=1.3e-11 Score=116.02 Aligned_cols=101 Identities=22% Similarity=0.165 Sum_probs=83.8
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNP 274 (324)
...+|||+|||+|.++..+++.+ |+.+++++|+ +.+++.|++++...++.+++++..+|++++++ ..||+|+++-
T Consensus 169 ~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~p---~~~D~v~~~~ 243 (332)
T 3i53_A 169 ALGHVVDVGGGSGGLLSALLTAH-EDLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFFDPLP---AGAGGYVLSA 243 (332)
T ss_dssp GGSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCCC---CSCSEEEEES
T ss_pred CCCEEEEeCCChhHHHHHHHHHC-CCCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCCCCCC---CCCcEEEEeh
Confidence 35699999999999999999987 8889999999 99999999999999998899999999986544 2799999942
Q ss_pred CCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 275 PYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
+..|-+. +....+++++.+.|||||+
T Consensus 244 --------------vlh~~~~----------~~~~~~l~~~~~~L~pgG~ 269 (332)
T 3i53_A 244 --------------VLHDWDD----------LSAVAILRRCAEAAGSGGV 269 (332)
T ss_dssp --------------CGGGSCH----------HHHHHHHHHHHHHHTTTCE
T ss_pred --------------hhccCCH----------HHHHHHHHHHHHhcCCCCE
Confidence 2222111 2245789999999999995
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=1.6e-11 Score=116.39 Aligned_cols=102 Identities=21% Similarity=0.281 Sum_probs=83.2
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEc
Q 020573 194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN 273 (324)
Q Consensus 194 ~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsN 273 (324)
.++.+|||+|||+|.++..+++.+ ++.+++++|+ +.+++.|++|+..+++.++++++.+|+++.++ ..||+|+++
T Consensus 182 ~~~~~vLDvG~G~G~~~~~l~~~~-~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~---~~~D~v~~~ 256 (360)
T 1tw3_A 182 TNVRHVLDVGGGKGGFAAAIARRA-PHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEPLP---RKADAIILS 256 (360)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSCCS---SCEEEEEEE
T ss_pred ccCcEEEEeCCcCcHHHHHHHHhC-CCCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCCCC---CCccEEEEc
Confidence 346799999999999999999986 7889999999 99999999999999998789999999987554 359999996
Q ss_pred CCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 274 PPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
..+. |-+ -.....+++++.+.|||||+
T Consensus 257 ~vl~--------------~~~----------~~~~~~~l~~~~~~L~pgG~ 283 (360)
T 1tw3_A 257 FVLL--------------NWP----------DHDAVRILTRCAEALEPGGR 283 (360)
T ss_dssp SCGG--------------GSC----------HHHHHHHHHHHHHTEEEEEE
T ss_pred cccc--------------CCC----------HHHHHHHHHHHHHhcCCCcE
Confidence 4321 111 11234688899999999984
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.28 E-value=1.3e-11 Score=114.38 Aligned_cols=90 Identities=16% Similarity=0.239 Sum_probs=73.3
Q ss_pred HHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccc
Q 020573 179 MVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFG 258 (324)
Q Consensus 179 lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~ 258 (324)
+++.+.+.+ ...++.+|||+|||+|.++..+++.. .+|+|+|+|+.+++.|++++..++..++++++++|+.+
T Consensus 16 i~~~i~~~~----~~~~~~~VLDiG~G~G~lt~~L~~~~---~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~ 88 (285)
T 1zq9_A 16 IINSIIDKA----ALRPTDVVLEVGPGTGNMTVKLLEKA---KKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLK 88 (285)
T ss_dssp HHHHHHHHT----CCCTTCEEEEECCTTSTTHHHHHHHS---SEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTT
T ss_pred HHHHHHHhc----CCCCCCEEEEEcCcccHHHHHHHhhC---CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceec
Confidence 455555544 23356799999999999999999973 69999999999999999999877765679999999986
Q ss_pred ccccCCCCeeEEEEcCCCCC
Q 020573 259 KLKDVEGKLSGVVSNPPYIP 278 (324)
Q Consensus 259 ~l~~~~~~fDlIVsNPPYi~ 278 (324)
. .. ..||+|++|+||.-
T Consensus 89 ~-~~--~~fD~vv~nlpy~~ 105 (285)
T 1zq9_A 89 T-DL--PFFDTCVANLPYQI 105 (285)
T ss_dssp S-CC--CCCSEEEEECCGGG
T ss_pred c-cc--hhhcEEEEecCccc
Confidence 3 21 37999999999963
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.9e-11 Score=126.76 Aligned_cols=126 Identities=23% Similarity=0.253 Sum_probs=93.0
Q ss_pred eCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHc--
Q 020573 166 EEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRY-- 243 (324)
Q Consensus 166 ~~~vliPrp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~-- 243 (324)
..+.|.| +.++..++.+.+.+ .. ..+.+|||+|||+|.++..+++..++..+|+|+|+|+.+++.|+++++..
T Consensus 697 e~gtFsP-PL~eqRle~LLelL-~~---~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~ln 771 (950)
T 3htx_A 697 EAAFFKP-PLSKQRVEYALKHI-RE---SSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLN 771 (950)
T ss_dssp CCCCSSS-CHHHHHHHHHHHHH-HH---SCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTT
T ss_pred hhCcCCc-hHHHHHHHHHHHHh-cc---cCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccc
Confidence 3445555 66677777777776 21 24679999999999999999987434579999999999999999977643
Q ss_pred ----CCCCcEEEEEcccccccccCCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhccc
Q 020573 244 ----GLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASML 319 (324)
Q Consensus 244 ----gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~L 319 (324)
++. +++++++|+.+. ....++||+|+++ ++..|-+. .....+++++.++|
T Consensus 772 Akr~gl~-nVefiqGDa~dL-p~~d~sFDlVV~~--------------eVLeHL~d----------p~l~~~L~eI~RvL 825 (950)
T 3htx_A 772 KEACNVK-SATLYDGSILEF-DSRLHDVDIGTCL--------------EVIEHMEE----------DQACEFGEKVLSLF 825 (950)
T ss_dssp TTCSSCS-EEEEEESCTTSC-CTTSCSCCEEEEE--------------SCGGGSCH----------HHHHHHHHHHHHTT
T ss_pred hhhcCCC-ceEEEECchHhC-CcccCCeeEEEEe--------------CchhhCCh----------HHHHHHHHHHHHHc
Confidence 443 699999999873 3335789999994 22233221 12335788999999
Q ss_pred CCC
Q 020573 320 KPD 322 (324)
Q Consensus 320 kpg 322 (324)
|||
T Consensus 826 KPG 828 (950)
T 3htx_A 826 HPK 828 (950)
T ss_dssp CCS
T ss_pred CCC
Confidence 998
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=1.6e-11 Score=107.15 Aligned_cols=96 Identities=21% Similarity=0.213 Sum_probs=76.4
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNP 274 (324)
++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|++ .+.. +++++++|+.+.. ..++||+|+++-
T Consensus 46 ~~~~vLdiG~G~G~~~~~l~~~---~~~v~~~D~s~~~~~~a~~----~~~~-~~~~~~~d~~~~~--~~~~~D~v~~~~ 115 (218)
T 3ou2_A 46 IRGDVLELASGTGYWTRHLSGL---ADRVTALDGSAEMIAEAGR----HGLD-NVEFRQQDLFDWT--PDRQWDAVFFAH 115 (218)
T ss_dssp SCSEEEEESCTTSHHHHHHHHH---SSEEEEEESCHHHHHHHGG----GCCT-TEEEEECCTTSCC--CSSCEEEEEEES
T ss_pred CCCeEEEECCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHh----cCCC-CeEEEecccccCC--CCCceeEEEEec
Confidence 4569999999999999999997 3699999999999999998 4543 5999999998762 347999999962
Q ss_pred CCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 275 PYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
+..|-|. ..+..+++++.++|||||+
T Consensus 116 --------------~l~~~~~----------~~~~~~l~~~~~~L~pgG~ 141 (218)
T 3ou2_A 116 --------------WLAHVPD----------DRFEAFWESVRSAVAPGGV 141 (218)
T ss_dssp --------------CGGGSCH----------HHHHHHHHHHHHHEEEEEE
T ss_pred --------------hhhcCCH----------HHHHHHHHHHHHHcCCCeE
Confidence 2233221 2245789999999999984
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.27 E-value=6.8e-12 Score=110.12 Aligned_cols=96 Identities=11% Similarity=0.121 Sum_probs=75.3
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNP 274 (324)
++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|++++. .+++++++|+.+.... ++||+|+++-
T Consensus 45 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~-----~~~~~~~~d~~~~~~~--~~fD~v~~~~ 114 (220)
T 3hnr_A 45 SFGNVLEFGVGTGNLTNKLLLA---GRTVYGIEPSREMRMIAKEKLP-----KEFSITEGDFLSFEVP--TSIDTIVSTY 114 (220)
T ss_dssp CCSEEEEECCTTSHHHHHHHHT---TCEEEEECSCHHHHHHHHHHSC-----TTCCEESCCSSSCCCC--SCCSEEEEES
T ss_pred CCCeEEEeCCCCCHHHHHHHhC---CCeEEEEeCCHHHHHHHHHhCC-----CceEEEeCChhhcCCC--CCeEEEEECc
Confidence 4669999999999999999986 4799999999999999998864 4699999999874322 7999999973
Q ss_pred CCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 275 PYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
.+ .|-+.. ....+++++.+.|||||+
T Consensus 115 ~l--------------~~~~~~----------~~~~~l~~~~~~LkpgG~ 140 (220)
T 3hnr_A 115 AF--------------HHLTDD----------EKNVAIAKYSQLLNKGGK 140 (220)
T ss_dssp CG--------------GGSCHH----------HHHHHHHHHHHHSCTTCE
T ss_pred ch--------------hcCChH----------HHHHHHHHHHHhcCCCCE
Confidence 32 221111 112488999999999995
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=3.9e-11 Score=113.96 Aligned_cols=102 Identities=14% Similarity=0.120 Sum_probs=83.3
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEc
Q 020573 194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN 273 (324)
Q Consensus 194 ~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsN 273 (324)
..+.+|||+|||+|.++..+++.+ |+.+++++|+ +.+++.|++|++..++.++++++.+|+++. +. ..+|+|+++
T Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~--~~~D~v~~~ 263 (359)
T 1x19_A 189 DGVKKMIDVGGGIGDISAAMLKHF-PELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKE-SY--PEADAVLFC 263 (359)
T ss_dssp TTCCEEEEESCTTCHHHHHHHHHC-TTCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTS-CC--CCCSEEEEE
T ss_pred CCCCEEEEECCcccHHHHHHHHHC-CCCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccC-CC--CCCCEEEEe
Confidence 356799999999999999999986 7889999999 999999999999999988899999999874 21 234999995
Q ss_pred CCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 274 PPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
-.+ .+-+ -+....+++++.+.|||||+
T Consensus 264 ~vl--------------h~~~----------d~~~~~~l~~~~~~L~pgG~ 290 (359)
T 1x19_A 264 RIL--------------YSAN----------EQLSTIMCKKAFDAMRSGGR 290 (359)
T ss_dssp SCG--------------GGSC----------HHHHHHHHHHHHTTCCTTCE
T ss_pred chh--------------ccCC----------HHHHHHHHHHHHHhcCCCCE
Confidence 322 2111 13355789999999999994
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.26 E-value=1e-13 Score=125.29 Aligned_cols=79 Identities=14% Similarity=0.221 Sum_probs=64.6
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNP 274 (324)
++.+|||+|||+|.++..+++.. .+|+|+|+|+.+++.|++|++ + .++++++++|+.+......++| .||+||
T Consensus 29 ~~~~VLDiG~G~G~~~~~l~~~~---~~v~~id~~~~~~~~a~~~~~--~-~~~v~~~~~D~~~~~~~~~~~f-~vv~n~ 101 (245)
T 1yub_A 29 ETDTVYEIGTGKGHLTTKLAKIS---KQVTSIELDSHLFNLSSEKLK--L-NTRVTLIHQDILQFQFPNKQRY-KIVGNI 101 (245)
T ss_dssp SSEEEEECSCCCSSCSHHHHHHS---SEEEESSSSCSSSSSSSCTTT--T-CSEEEECCSCCTTTTCCCSSEE-EEEEEC
T ss_pred CCCEEEEEeCCCCHHHHHHHHhC---CeEEEEECCHHHHHHHHHHhc--c-CCceEEEECChhhcCcccCCCc-EEEEeC
Confidence 46689999999999999999973 799999999999999998876 2 3569999999987421112578 899999
Q ss_pred CCCCCC
Q 020573 275 PYIPSD 280 (324)
Q Consensus 275 PYi~~~ 280 (324)
||....
T Consensus 102 Py~~~~ 107 (245)
T 1yub_A 102 PYHLST 107 (245)
T ss_dssp CSSSCH
T ss_pred CccccH
Confidence 998653
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=1.8e-11 Score=114.24 Aligned_cols=90 Identities=20% Similarity=0.272 Sum_probs=71.2
Q ss_pred HHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccc
Q 020573 179 MVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFG 258 (324)
Q Consensus 179 lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~ 258 (324)
+++.+.+.+ ...++.+|||+|||+|.++..+++. ..+|+|+|+|+.+++.|++++... ++++++++|+.+
T Consensus 38 i~~~Iv~~l----~~~~~~~VLEIG~G~G~lT~~La~~---~~~V~aVEid~~li~~a~~~~~~~---~~v~vi~gD~l~ 107 (295)
T 3gru_A 38 FVNKAVESA----NLTKDDVVLEIGLGKGILTEELAKN---AKKVYVIEIDKSLEPYANKLKELY---NNIEIIWGDALK 107 (295)
T ss_dssp HHHHHHHHT----TCCTTCEEEEECCTTSHHHHHHHHH---SSEEEEEESCGGGHHHHHHHHHHC---SSEEEEESCTTT
T ss_pred HHHHHHHhc----CCCCcCEEEEECCCchHHHHHHHhc---CCEEEEEECCHHHHHHHHHHhccC---CCeEEEECchhh
Confidence 455555544 2335679999999999999999997 379999999999999999998732 369999999987
Q ss_pred ccccCCCCeeEEEEcCCCCCC
Q 020573 259 KLKDVEGKLSGVVSNPPYIPS 279 (324)
Q Consensus 259 ~l~~~~~~fDlIVsNPPYi~~ 279 (324)
.... ...||.||+|+||...
T Consensus 108 ~~~~-~~~fD~Iv~NlPy~is 127 (295)
T 3gru_A 108 VDLN-KLDFNKVVANLPYQIS 127 (295)
T ss_dssp SCGG-GSCCSEEEEECCGGGH
T ss_pred CCcc-cCCccEEEEeCccccc
Confidence 3211 2479999999999643
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.26 E-value=5.8e-12 Score=114.30 Aligned_cols=105 Identities=18% Similarity=0.218 Sum_probs=79.9
Q ss_pred HHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccc
Q 020573 178 LMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWF 257 (324)
Q Consensus 178 ~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~ 257 (324)
.+.+.+.+.+ ...++.+|||+|||+|.++..+++ ++.+|+|+|+|+.+++.|+++. +++++++|+.
T Consensus 21 ~~~~~l~~~~----~~~~~~~vLDiGcG~G~~~~~l~~---~~~~v~gvD~s~~~~~~a~~~~-------~~~~~~~d~~ 86 (261)
T 3ege_A 21 RIVNAIINLL----NLPKGSVIADIGAGTGGYSVALAN---QGLFVYAVEPSIVMRQQAVVHP-------QVEWFTGYAE 86 (261)
T ss_dssp HHHHHHHHHH----CCCTTCEEEEETCTTSHHHHHHHT---TTCEEEEECSCHHHHHSSCCCT-------TEEEECCCTT
T ss_pred HHHHHHHHHh----CCCCCCEEEEEcCcccHHHHHHHh---CCCEEEEEeCCHHHHHHHHhcc-------CCEEEECchh
Confidence 4566666655 233567999999999999999987 4589999999999999887654 5999999997
Q ss_pred cccccCCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 258 GKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 258 ~~l~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
+ ++...++||+|+++-.+ .|-+ ....+++++.++|| ||+
T Consensus 87 ~-~~~~~~~fD~v~~~~~l--------------~~~~------------~~~~~l~~~~~~Lk-gG~ 125 (261)
T 3ege_A 87 N-LALPDKSVDGVISILAI--------------HHFS------------HLEKSFQEMQRIIR-DGT 125 (261)
T ss_dssp S-CCSCTTCBSEEEEESCG--------------GGCS------------SHHHHHHHHHHHBC-SSC
T ss_pred h-CCCCCCCEeEEEEcchH--------------hhcc------------CHHHHHHHHHHHhC-CcE
Confidence 6 33334799999996332 2211 23478899999999 994
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.26 E-value=5.3e-12 Score=111.06 Aligned_cols=105 Identities=18% Similarity=0.163 Sum_probs=75.6
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHH----HHcCCCCcEEEEEcccccccccCCCCeeEE
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNA----QRYGLQDIIEIRQGSWFGKLKDVEGKLSGV 270 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~----~~~gl~~rv~~~~gD~~~~l~~~~~~fDlI 270 (324)
++.+|||+|||+|.++..+++.+ |+.+|+|+|+|+.+++.+.+++ ...++. +++++++|+.+ ++...+. |.|
T Consensus 27 ~~~~vLDiGcG~G~~~~~la~~~-p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~-~v~~~~~d~~~-l~~~~~~-d~v 102 (218)
T 3mq2_A 27 YDDVVLDVGTGDGKHPYKVARQN-PSRLVVALDADKSRMEKISAKAAAKPAKGGLP-NLLYLWATAER-LPPLSGV-GEL 102 (218)
T ss_dssp SSEEEEEESCTTCHHHHHHHHHC-TTEEEEEEESCGGGGHHHHHHHTSCGGGTCCT-TEEEEECCSTT-CCSCCCE-EEE
T ss_pred CCCEEEEecCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhhhhcCCC-ceEEEecchhh-CCCCCCC-CEE
Confidence 45689999999999999999985 7899999999999888644333 345554 59999999987 3333345 888
Q ss_pred EEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 271 VSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 271 VsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
+.+.+|.. ....|-+. ...+++++.++|||||+
T Consensus 103 ~~~~~~~~---------~~~~~~~~------------~~~~l~~~~~~LkpgG~ 135 (218)
T 3mq2_A 103 HVLMPWGS---------LLRGVLGS------------SPEMLRGMAAVCRPGAS 135 (218)
T ss_dssp EEESCCHH---------HHHHHHTS------------SSHHHHHHHHTEEEEEE
T ss_pred EEEccchh---------hhhhhhcc------------HHHHHHHHHHHcCCCcE
Confidence 87665421 00011111 13688999999999994
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=2.4e-11 Score=113.11 Aligned_cols=106 Identities=12% Similarity=0.085 Sum_probs=80.1
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcC------CCCcEEEEEccccccc-----ccC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYG------LQDIIEIRQGSWFGKL-----KDV 263 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~g------l~~rv~~~~gD~~~~l-----~~~ 263 (324)
++.+|||+|||+|.++..+++. +..+|+|+|+|+.+++.|+++....+ ...+++++++|+.+.. ...
T Consensus 34 ~~~~VLDlGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 111 (313)
T 3bgv_A 34 RDITVLDLGCGKGGDLLKWKKG--RINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDP 111 (313)
T ss_dssp -CCEEEEETCTTTTTHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSST
T ss_pred CCCEEEEECCCCcHHHHHHHhc--CCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccC
Confidence 4569999999999999999884 56799999999999999999987652 2346999999998742 212
Q ss_pred CCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 264 EGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 264 ~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
.++||+|+++-.. .|-+ ........+++++.++|||||+
T Consensus 112 ~~~fD~V~~~~~l--------------~~~~--------~~~~~~~~~l~~~~~~LkpgG~ 150 (313)
T 3bgv_A 112 QMCFDICSCQFVC--------------HYSF--------ESYEQADMMLRNACERLSPGGY 150 (313)
T ss_dssp TCCEEEEEEETCG--------------GGGG--------GSHHHHHHHHHHHHTTEEEEEE
T ss_pred CCCEEEEEEecch--------------hhcc--------CCHHHHHHHHHHHHHHhCCCcE
Confidence 3589999996221 1110 1134556899999999999995
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.25 E-value=1.1e-11 Score=117.13 Aligned_cols=103 Identities=17% Similarity=0.063 Sum_probs=83.8
Q ss_pred CCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcCC
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPP 275 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNPP 275 (324)
+.+|||+|||+|.++..+++.+ |+.+++++|+ +.+++.|++++...++.++++++.+|+++......+.||+|+++--
T Consensus 180 ~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~v 257 (352)
T 3mcz_A 180 ARTVIDLAGGHGTYLAQVLRRH-PQLTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEGGAADVVMLNDC 257 (352)
T ss_dssp CCEEEEETCTTCHHHHHHHHHC-TTCEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGTTCCEEEEEEESC
T ss_pred CCEEEEeCCCcCHHHHHHHHhC-CCCeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCcccCCCCccEEEEecc
Confidence 6799999999999999999986 7899999999 8899999999999999889999999998853112357999999522
Q ss_pred CCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 276 YIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 276 Yi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
.+|-+ -+....+++++.+.|||||+
T Consensus 258 --------------lh~~~----------~~~~~~~l~~~~~~L~pgG~ 282 (352)
T 3mcz_A 258 --------------LHYFD----------AREAREVIGHAAGLVKPGGA 282 (352)
T ss_dssp --------------GGGSC----------HHHHHHHHHHHHHTEEEEEE
T ss_pred --------------cccCC----------HHHHHHHHHHHHHHcCCCCE
Confidence 12211 12345789999999999984
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=1.5e-11 Score=113.36 Aligned_cols=89 Identities=12% Similarity=0.055 Sum_probs=69.7
Q ss_pred HHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccc
Q 020573 179 MVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFG 258 (324)
Q Consensus 179 lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~ 258 (324)
+++.+.+.+ ...++ +|||+|||+|.++..+++.. .+|+|+|+|+.+++.+++|+. ..+++++++|+.+
T Consensus 35 i~~~Iv~~~----~~~~~-~VLEIG~G~G~lt~~L~~~~---~~V~avEid~~~~~~l~~~~~----~~~v~vi~~D~l~ 102 (271)
T 3fut_A 35 HLRRIVEAA----RPFTG-PVFEVGPGLGALTRALLEAG---AEVTAIEKDLRLRPVLEETLS----GLPVRLVFQDALL 102 (271)
T ss_dssp HHHHHHHHH----CCCCS-CEEEECCTTSHHHHHHHHTT---CCEEEEESCGGGHHHHHHHTT----TSSEEEEESCGGG
T ss_pred HHHHHHHhc----CCCCC-eEEEEeCchHHHHHHHHHcC---CEEEEEECCHHHHHHHHHhcC----CCCEEEEECChhh
Confidence 445555554 23346 99999999999999999963 689999999999999999875 2469999999987
Q ss_pred ccccCCCCeeEEEEcCCCCCC
Q 020573 259 KLKDVEGKLSGVVSNPPYIPS 279 (324)
Q Consensus 259 ~l~~~~~~fDlIVsNPPYi~~ 279 (324)
........+|.||+|+||..+
T Consensus 103 ~~~~~~~~~~~iv~NlPy~is 123 (271)
T 3fut_A 103 YPWEEVPQGSLLVANLPYHIA 123 (271)
T ss_dssp SCGGGSCTTEEEEEEECSSCC
T ss_pred CChhhccCccEEEecCccccc
Confidence 422111368999999999754
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.24 E-value=1.4e-11 Score=113.05 Aligned_cols=100 Identities=11% Similarity=0.032 Sum_probs=68.8
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEc
Q 020573 194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN 273 (324)
Q Consensus 194 ~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsN 273 (324)
.++.+|||+|||+|.+++.+++. ..+|+|+|+|+.|++.|++|+..+.+ ...+...+.. ......++||+|++|
T Consensus 44 ~~g~~VLDlGcGtG~~a~~La~~---g~~V~gvD~S~~ml~~Ar~~~~~~~v--~~~~~~~~~~-~~~~~~~~fD~Vv~~ 117 (261)
T 3iv6_A 44 VPGSTVAVIGASTRFLIEKALER---GASVTVFDFSQRMCDDLAEALADRCV--TIDLLDITAE-IPKELAGHFDFVLND 117 (261)
T ss_dssp CTTCEEEEECTTCHHHHHHHHHT---TCEEEEEESCHHHHHHHHHHTSSSCC--EEEECCTTSC-CCGGGTTCCSEEEEE
T ss_pred CCcCEEEEEeCcchHHHHHHHhc---CCEEEEEECCHHHHHHHHHHHHhccc--eeeeeecccc-cccccCCCccEEEEh
Confidence 45679999999999999999986 37999999999999999999765411 1222222220 001224689999998
Q ss_pred CCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 274 PPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
..+. |-+ .+..+.+++.+.++| |||+
T Consensus 118 ~~l~--------------~~~----------~~~~~~~l~~l~~lL-PGG~ 143 (261)
T 3iv6_A 118 RLIN--------------RFT----------TEEARRACLGMLSLV-GSGT 143 (261)
T ss_dssp SCGG--------------GSC----------HHHHHHHHHHHHHHH-TTSE
T ss_pred hhhH--------------hCC----------HHHHHHHHHHHHHhC-cCcE
Confidence 5432 100 123446778888889 9984
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.24 E-value=2.1e-11 Score=108.43 Aligned_cols=107 Identities=12% Similarity=0.167 Sum_probs=80.7
Q ss_pred HHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccc
Q 020573 178 LMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWF 257 (324)
Q Consensus 178 ~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~ 257 (324)
.+++.+...+ .++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|+++. ...+++++++|+.
T Consensus 42 ~~~~~l~~~~------~~~~~vLDiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~----~~~~~~~~~~d~~ 108 (242)
T 3l8d_A 42 TIIPFFEQYV------KKEAEVLDVGCGDGYGTYKLSRT---GYKAVGVDISEVMIQKGKERG----EGPDLSFIKGDLS 108 (242)
T ss_dssp THHHHHHHHS------CTTCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHTTT----CBTTEEEEECBTT
T ss_pred HHHHHHHHHc------CCCCeEEEEcCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhc----ccCCceEEEcchh
Confidence 3455555544 14569999999999999999986 469999999999999999874 2346999999998
Q ss_pred cccccCCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 258 GKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 258 ~~l~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
+. +...++||+|+++-.+ .|-+. ...+++++.++|||||+
T Consensus 109 ~~-~~~~~~fD~v~~~~~l--------------~~~~~------------~~~~l~~~~~~L~pgG~ 148 (242)
T 3l8d_A 109 SL-PFENEQFEAIMAINSL--------------EWTEE------------PLRALNEIKRVLKSDGY 148 (242)
T ss_dssp BC-SSCTTCEEEEEEESCT--------------TSSSC------------HHHHHHHHHHHEEEEEE
T ss_pred cC-CCCCCCccEEEEcChH--------------hhccC------------HHHHHHHHHHHhCCCeE
Confidence 63 3235799999996333 22111 23678999999999984
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.24 E-value=4.7e-12 Score=115.37 Aligned_cols=106 Identities=16% Similarity=0.031 Sum_probs=75.2
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcC--C--------------------------
Q 020573 194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYG--L-------------------------- 245 (324)
Q Consensus 194 ~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~g--l-------------------------- 245 (324)
.++.+|||+|||+|.+++.++.. ...+|+|+|+|+.|++.|+++++... +
T Consensus 54 ~~g~~vLDiGCG~G~~~~~~~~~--~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~ 131 (263)
T 2a14_A 54 LQGDTLIDIGSGPTIYQVLAACD--SFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKL 131 (263)
T ss_dssp CCEEEEEESSCTTCCGGGTTGGG--TEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred CCCceEEEeCCCccHHHHHHHHh--hhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHH
Confidence 35678999999999887776654 22479999999999999999876532 1
Q ss_pred CCcEE-EEEccccccccc---CCCCeeEEEEcCCCCCCCCcccchhhhhccc-ccccccCCCCcHHHHHHHHHHHhcccC
Q 020573 246 QDIIE-IRQGSWFGKLKD---VEGKLSGVVSNPPYIPSDDISGLQVEVGKHE-PRLALDGGVDGLDYLLHLCNGTASMLK 320 (324)
Q Consensus 246 ~~rv~-~~~gD~~~~l~~---~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~e-P~~aL~gg~dGl~~~~~il~~a~~~Lk 320 (324)
..++. ++++|+.+..+. ..++||+|+++ .+..|- |. ++.+..+++++.++||
T Consensus 132 ~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~--------------~~l~~i~~~---------~~~~~~~l~~i~r~LK 188 (263)
T 2a14_A 132 RAAVKRVLKCDVHLGNPLAPAVLPLADCVLTL--------------LAMECACCS---------LDAYRAALCNLASLLK 188 (263)
T ss_dssp HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEE--------------SCHHHHCSS---------HHHHHHHHHHHHTTEE
T ss_pred HhhhheEEeccccCCCCCCccccCCCCEeeeh--------------HHHHHhcCC---------HHHHHHHHHHHHHHcC
Confidence 01244 899999874221 13689999995 111220 11 3455678999999999
Q ss_pred CCCC
Q 020573 321 PDKW 324 (324)
Q Consensus 321 pgG~ 324 (324)
|||+
T Consensus 189 PGG~ 192 (263)
T 2a14_A 189 PGGH 192 (263)
T ss_dssp EEEE
T ss_pred CCcE
Confidence 9995
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.24 E-value=1.5e-11 Score=115.45 Aligned_cols=99 Identities=15% Similarity=0.096 Sum_probs=81.8
Q ss_pred CeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcCCC
Q 020573 197 GFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPY 276 (324)
Q Consensus 197 ~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNPPY 276 (324)
.+|||+|||+|.++..+++.+ |+.+++++|+ +.+++.|++++...++.++++++.+|+++.++ ++||+|+++-..
T Consensus 169 ~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~---~~~D~v~~~~vl 243 (334)
T 2ip2_A 169 RSFVDVGGGSGELTKAILQAE-PSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQEVP---SNGDIYLLSRII 243 (334)
T ss_dssp CEEEEETCTTCHHHHHHHHHC-TTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTTCCC---SSCSEEEEESCG
T ss_pred CEEEEeCCCchHHHHHHHHHC-CCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCCCCC---CCCCEEEEchhc
Confidence 799999999999999999986 7889999999 99999999999888887889999999988533 579999985222
Q ss_pred CCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 277 IPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 277 i~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
.|-+ -+....+++++.+.|||||+
T Consensus 244 --------------~~~~----------~~~~~~~l~~~~~~L~pgG~ 267 (334)
T 2ip2_A 244 --------------GDLD----------EAASLRLLGNCREAMAGDGR 267 (334)
T ss_dssp --------------GGCC----------HHHHHHHHHHHHHHSCTTCE
T ss_pred --------------cCCC----------HHHHHHHHHHHHHhcCCCCE
Confidence 1111 12234789999999999994
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.23 E-value=6.2e-11 Score=104.96 Aligned_cols=97 Identities=18% Similarity=0.071 Sum_probs=75.1
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNP 274 (324)
++.+|||+|||+|.++..+++.. .+|+|+|+|+.+++.|+++. .+++++++|+.+.. . .++||+|++.-
T Consensus 40 ~~~~vLdiG~G~G~~~~~l~~~~---~~v~~~D~s~~~~~~a~~~~------~~~~~~~~d~~~~~-~-~~~~D~v~~~~ 108 (239)
T 3bxo_A 40 EASSLLDVACGTGTHLEHFTKEF---GDTAGLELSEDMLTHARKRL------PDATLHQGDMRDFR-L-GRKFSAVVSMF 108 (239)
T ss_dssp TCCEEEEETCTTSHHHHHHHHHH---SEEEEEESCHHHHHHHHHHC------TTCEEEECCTTTCC-C-SSCEEEEEECT
T ss_pred CCCeEEEecccCCHHHHHHHHhC---CcEEEEeCCHHHHHHHHHhC------CCCEEEECCHHHcc-c-CCCCcEEEEcC
Confidence 45799999999999999999985 38999999999999999874 24899999997742 2 46899999621
Q ss_pred CCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 275 PYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
.+..|-+. .+....+++++.++|||||+
T Consensus 109 -------------~~~~~~~~---------~~~~~~~l~~~~~~L~pgG~ 136 (239)
T 3bxo_A 109 -------------SSVGYLKT---------TEELGAAVASFAEHLEPGGV 136 (239)
T ss_dssp -------------TGGGGCCS---------HHHHHHHHHHHHHTEEEEEE
T ss_pred -------------chHhhcCC---------HHHHHHHHHHHHHhcCCCeE
Confidence 11122111 23456789999999999994
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=99.23 E-value=1.7e-11 Score=122.98 Aligned_cols=104 Identities=18% Similarity=0.286 Sum_probs=79.8
Q ss_pred CCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCC------------CcEEEEEeCCHHHHH
Q 020573 167 EGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGS------------KGSIIAVDLNPLAAA 234 (324)
Q Consensus 167 ~~vliPrp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p------------~~~V~gvDis~~al~ 234 (324)
...|.||+..+++++.+. ...+.+|+|++||||.+.+.+.+.+.. ...++|+|+++.+..
T Consensus 197 GqfyTP~~Vv~lmv~l~~--------p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~ 268 (530)
T 3ufb_A 197 GEFYTPRPVVRFMVEVMD--------PQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYL 268 (530)
T ss_dssp CCCCCCHHHHHHHHHHHC--------CCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHH
T ss_pred ceECCcHHHHHHHHHhhc--------cCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHH
Confidence 457889988887777543 223568999999999999988775421 246999999999999
Q ss_pred HHHHHHHHcCCCCcEEEEEccccccc-cc--CCCCeeEEEEcCCCCCC
Q 020573 235 VAAFNAQRYGLQDIIEIRQGSWFGKL-KD--VEGKLSGVVSNPPYIPS 279 (324)
Q Consensus 235 ~Ar~N~~~~gl~~rv~~~~gD~~~~l-~~--~~~~fDlIVsNPPYi~~ 279 (324)
+|+.|+..+|... ..+..+|.+... .. ...+||+||+||||...
T Consensus 269 la~mNl~lhg~~~-~~I~~~dtL~~~~~~~~~~~~fD~Il~NPPf~~~ 315 (530)
T 3ufb_A 269 LVQMNLLLHGLEY-PRIDPENSLRFPLREMGDKDRVDVILTNPPFGGE 315 (530)
T ss_dssp HHHHHHHHHTCSC-CEEECSCTTCSCGGGCCGGGCBSEEEECCCSSCB
T ss_pred HHHHHHHhcCCcc-ccccccccccCchhhhcccccceEEEecCCCCcc
Confidence 9999999999864 678888876521 11 12479999999999744
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.23 E-value=1.4e-11 Score=106.82 Aligned_cols=95 Identities=15% Similarity=0.150 Sum_probs=74.5
Q ss_pred CCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcCC
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPP 275 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNPP 275 (324)
+.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|+++. .+++++++|+.+. +...++||+|+++-.
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~------~~~~~~~~d~~~~-~~~~~~fD~v~~~~~ 111 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASL---GHQIEGLEPATRLVELARQTH------PSVTFHHGTITDL-SDSPKRWAGLLAWYS 111 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHT---TCCEEEECCCHHHHHHHHHHC------TTSEEECCCGGGG-GGSCCCEEEEEEESS
T ss_pred CCeEEEecCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHHhC------CCCeEEeCccccc-ccCCCCeEEEEehhh
Confidence 568999999999999999986 368999999999999999872 2599999999773 333579999999643
Q ss_pred CCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 276 YIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 276 Yi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
+ .|-+. +....+++++.++|||||+
T Consensus 112 l--------------~~~~~----------~~~~~~l~~~~~~L~pgG~ 136 (203)
T 3h2b_A 112 L--------------IHMGP----------GELPDALVALRMAVEDGGG 136 (203)
T ss_dssp S--------------TTCCT----------TTHHHHHHHHHHTEEEEEE
T ss_pred H--------------hcCCH----------HHHHHHHHHHHHHcCCCcE
Confidence 2 22110 1234788999999999994
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=2.1e-11 Score=112.51 Aligned_cols=104 Identities=21% Similarity=0.294 Sum_probs=75.7
Q ss_pred CCeEEEEcCCccH----HHHHHHHHhCC---CcEEEEEeCCHHHHHHHHHHHH--------------Hc---------C-
Q 020573 196 DGFWVDLGTGSGA----IAIGIARVLGS---KGSIIAVDLNPLAAAVAAFNAQ--------------RY---------G- 244 (324)
Q Consensus 196 ~~~VLDLGcGsG~----iai~la~~~~p---~~~V~gvDis~~al~~Ar~N~~--------------~~---------g- 244 (324)
+.+|+|+|||||. +++.+++.++. +.+|+|+|+|++|++.|++++. ++ |
T Consensus 106 ~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~~ 185 (274)
T 1af7_A 106 EYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEGL 185 (274)
T ss_dssp CEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCSE
T ss_pred CcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCCc
Confidence 4589999999998 77778777532 4699999999999999999851 10 0
Q ss_pred ------CCCcEEEEEcccccc-cccCCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhc
Q 020573 245 ------LQDIIEIRQGSWFGK-LKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTAS 317 (324)
Q Consensus 245 ------l~~rv~~~~gD~~~~-l~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~ 317 (324)
+.++|.|.++|+.+. ++ ..++||+|+|. ..+. .++| +..+++++..++
T Consensus 186 ~~v~~~lr~~V~F~~~dl~~~~~~-~~~~fDlI~cr------nvli-------yf~~-----------~~~~~vl~~~~~ 240 (274)
T 1af7_A 186 VRVRQELANYVEFSSVNLLEKQYN-VPGPFDAIFCR------NVMI-------YFDK-----------TTQEDILRRFVP 240 (274)
T ss_dssp EEECHHHHTTEEEEECCTTCSSCC-CCCCEEEEEEC------SSGG-------GSCH-----------HHHHHHHHHHGG
T ss_pred eeechhhcccCeEEecccCCCCCC-cCCCeeEEEEC------CchH-------hCCH-----------HHHHHHHHHHHH
Confidence 113699999999873 22 13689999993 1111 1222 224689999999
Q ss_pred ccCCCCC
Q 020573 318 MLKPDKW 324 (324)
Q Consensus 318 ~LkpgG~ 324 (324)
.|||||+
T Consensus 241 ~L~pgG~ 247 (274)
T 1af7_A 241 LLKPDGL 247 (274)
T ss_dssp GEEEEEE
T ss_pred HhCCCcE
Confidence 9999995
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.23 E-value=3.3e-11 Score=102.81 Aligned_cols=97 Identities=18% Similarity=0.113 Sum_probs=75.9
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNP 274 (324)
++.+|||+|||+|.++..+++. +.+|+|+|+++.+++.|++|.. +++++++|+.+. ....++||+|++||
T Consensus 46 ~~~~vLdiG~G~G~~~~~l~~~---~~~v~~~D~~~~~~~~a~~~~~------~~~~~~~d~~~~-~~~~~~~D~i~~~~ 115 (195)
T 3cgg_A 46 RGAKILDAGCGQGRIGGYLSKQ---GHDVLGTDLDPILIDYAKQDFP------EARWVVGDLSVD-QISETDFDLIVSAG 115 (195)
T ss_dssp TTCEEEEETCTTTHHHHHHHHT---TCEEEEEESCHHHHHHHHHHCT------TSEEEECCTTTS-CCCCCCEEEEEECC
T ss_pred CCCeEEEECCCCCHHHHHHHHC---CCcEEEEcCCHHHHHHHHHhCC------CCcEEEcccccC-CCCCCceeEEEECC
Confidence 4569999999999999999986 3699999999999999998852 489999998873 22246899999997
Q ss_pred CCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 275 PYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
+... |-+ .+....+++.+.++|||||+
T Consensus 116 ~~~~-------------~~~----------~~~~~~~l~~~~~~l~~~G~ 142 (195)
T 3cgg_A 116 NVMG-------------FLA----------EDGREPALANIHRALGADGR 142 (195)
T ss_dssp CCGG-------------GSC----------HHHHHHHHHHHHHHEEEEEE
T ss_pred cHHh-------------hcC----------hHHHHHHHHHHHHHhCCCCE
Confidence 6531 100 12335788999999999984
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=7.7e-12 Score=112.57 Aligned_cols=107 Identities=13% Similarity=0.021 Sum_probs=78.9
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCC----------------------------
Q 020573 194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGL---------------------------- 245 (324)
Q Consensus 194 ~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl---------------------------- 245 (324)
.++.+|||+|||+|.++..+++.. . .+|+|+|+|+.+++.|++++...+.
T Consensus 55 ~~~~~vLDlGcG~G~~~~~l~~~~-~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 132 (265)
T 2i62_A 55 VKGELLIDIGSGPTIYQLLSACES-F-TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKL 132 (265)
T ss_dssp CCEEEEEEESCTTCCGGGTTGGGT-E-EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHH
T ss_pred cCCCEEEEECCCccHHHHHHhhcc-c-CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHh
Confidence 456799999999999999988763 2 5999999999999999998865421
Q ss_pred CCcE-EEEEcccccccccCC---CCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCC
Q 020573 246 QDII-EIRQGSWFGKLKDVE---GKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKP 321 (324)
Q Consensus 246 ~~rv-~~~~gD~~~~l~~~~---~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~Lkp 321 (324)
..++ +++++|+.+...... ++||+|+++- +..+-+ ..+..+..+++++.++|||
T Consensus 133 ~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~--------------~l~~~~--------~~~~~~~~~l~~~~~~Lkp 190 (265)
T 2i62_A 133 RRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTL--------------CLDAAC--------PDLPAYRTALRNLGSLLKP 190 (265)
T ss_dssp HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEES--------------CHHHHC--------SSHHHHHHHHHHHHTTEEE
T ss_pred hhhheeEEEeeeccCCCCCccccCCccEEEEhh--------------hhhhhc--------CChHHHHHHHHHHHhhCCC
Confidence 1127 999999987533223 6899999951 111100 0144567899999999999
Q ss_pred CCC
Q 020573 322 DKW 324 (324)
Q Consensus 322 gG~ 324 (324)
||+
T Consensus 191 gG~ 193 (265)
T 2i62_A 191 GGF 193 (265)
T ss_dssp EEE
T ss_pred CcE
Confidence 995
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.22 E-value=2.1e-11 Score=106.53 Aligned_cols=94 Identities=21% Similarity=0.111 Sum_probs=75.3
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNP 274 (324)
++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|++++ ++.+..+|+.+.. ..++||+|+++.
T Consensus 43 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~-------~~~~~~~d~~~~~--~~~~fD~v~~~~ 110 (211)
T 3e23_A 43 AGAKILELGCGAGYQAEAMLAA---GFDVDATDGSPELAAEASRRL-------GRPVRTMLFHQLD--AIDAYDAVWAHA 110 (211)
T ss_dssp TTCEEEESSCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHH-------TSCCEECCGGGCC--CCSCEEEEEECS
T ss_pred CCCcEEEECCCCCHHHHHHHHc---CCeEEEECCCHHHHHHHHHhc-------CCceEEeeeccCC--CCCcEEEEEecC
Confidence 4679999999999999999986 369999999999999999987 3778889987643 457999999974
Q ss_pred CCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 275 PYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
.+ .|-+ -+....+++++.+.|||||+
T Consensus 111 ~l--------------~~~~----------~~~~~~~l~~~~~~LkpgG~ 136 (211)
T 3e23_A 111 CL--------------LHVP----------RDELADVLKLIWRALKPGGL 136 (211)
T ss_dssp CG--------------GGSC----------HHHHHHHHHHHHHHEEEEEE
T ss_pred ch--------------hhcC----------HHHHHHHHHHHHHhcCCCcE
Confidence 32 2221 12445789999999999995
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=99.22 E-value=4e-11 Score=108.51 Aligned_cols=89 Identities=10% Similarity=0.131 Sum_probs=68.0
Q ss_pred HHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccc
Q 020573 179 MVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFG 258 (324)
Q Consensus 179 lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~ 258 (324)
+++.+.+.+ ....+.+|||+|||+|.++..+++.. .+|+|+|+|+.+++.|++|+... ++++++++|+.+
T Consensus 18 ~~~~i~~~~----~~~~~~~VLDiG~G~G~lt~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~~---~~v~~~~~D~~~ 87 (244)
T 1qam_A 18 NIDKIMTNI----RLNEHDNIFEIGSGKGHFTLELVQRC---NFVTAIEIDHKLCKTTENKLVDH---DNFQVLNKDILQ 87 (244)
T ss_dssp HHHHHHTTC----CCCTTCEEEEECCTTSHHHHHHHHHS---SEEEEECSCHHHHHHHHHHTTTC---CSEEEECCCGGG
T ss_pred HHHHHHHhC----CCCCCCEEEEEeCCchHHHHHHHHcC---CeEEEEECCHHHHHHHHHhhccC---CCeEEEEChHHh
Confidence 444454443 23356799999999999999999973 79999999999999999997642 469999999987
Q ss_pred ccccCCCCeeEEEEcCCCCC
Q 020573 259 KLKDVEGKLSGVVSNPPYIP 278 (324)
Q Consensus 259 ~l~~~~~~fDlIVsNPPYi~ 278 (324)
........| .||+||||..
T Consensus 88 ~~~~~~~~~-~vv~nlPy~~ 106 (244)
T 1qam_A 88 FKFPKNQSY-KIFGNIPYNI 106 (244)
T ss_dssp CCCCSSCCC-EEEEECCGGG
T ss_pred CCcccCCCe-EEEEeCCccc
Confidence 422111345 7999999963
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.21 E-value=2.9e-11 Score=107.41 Aligned_cols=97 Identities=15% Similarity=0.042 Sum_probs=75.3
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNP 274 (324)
++.+|||+|||+|.++..+++. ...+|+|+|+|+.+++.|+++... ++++++++|+.+. ....++||+|+++.
T Consensus 43 ~~~~vLdiG~G~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~----~~~~~~~~d~~~~-~~~~~~fD~v~~~~ 115 (243)
T 3bkw_A 43 GGLRIVDLGCGFGWFCRWAHEH--GASYVLGLDLSEKMLARARAAGPD----TGITYERADLDKL-HLPQDSFDLAYSSL 115 (243)
T ss_dssp TTCEEEEETCTTCHHHHHHHHT--TCSEEEEEESCHHHHHHHHHTSCS----SSEEEEECCGGGC-CCCTTCEEEEEEES
T ss_pred CCCEEEEEcCcCCHHHHHHHHC--CCCeEEEEcCCHHHHHHHHHhccc----CCceEEEcChhhc-cCCCCCceEEEEec
Confidence 4679999999999999999986 223999999999999999987643 3599999998763 22246899999964
Q ss_pred CCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 275 PYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
.+ .|-+ ....+++++.++|||||+
T Consensus 116 ~l--------------~~~~------------~~~~~l~~~~~~L~pgG~ 139 (243)
T 3bkw_A 116 AL--------------HYVE------------DVARLFRTVHQALSPGGH 139 (243)
T ss_dssp CG--------------GGCS------------CHHHHHHHHHHHEEEEEE
T ss_pred cc--------------cccc------------hHHHHHHHHHHhcCcCcE
Confidence 32 2211 123688999999999984
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.21 E-value=2.7e-11 Score=110.76 Aligned_cols=93 Identities=19% Similarity=0.153 Sum_probs=73.8
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNP 274 (324)
++.+|||+|||+|.++..+++ +..+|+|+|+|+.+++.|+++. .++++.++|+.+. +. .++||+|+++-
T Consensus 57 ~~~~vLDiGcG~G~~~~~l~~---~~~~v~gvD~s~~~~~~a~~~~------~~~~~~~~d~~~~-~~-~~~fD~v~~~~ 125 (279)
T 3ccf_A 57 PGEFILDLGCGTGQLTEKIAQ---SGAEVLGTDNAATMIEKARQNY------PHLHFDVADARNF-RV-DKPLDAVFSNA 125 (279)
T ss_dssp TTCEEEEETCTTSHHHHHHHH---TTCEEEEEESCHHHHHHHHHHC------TTSCEEECCTTTC-CC-SSCEEEEEEES
T ss_pred CCCEEEEecCCCCHHHHHHHh---CCCeEEEEECCHHHHHHHHhhC------CCCEEEECChhhC-Cc-CCCcCEEEEcc
Confidence 467999999999999999998 3579999999999999999875 3589999998763 32 47899999974
Q ss_pred CCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 275 PYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
.+ .|-+ ....+++++.++|||||+
T Consensus 126 ~l--------------~~~~------------d~~~~l~~~~~~LkpgG~ 149 (279)
T 3ccf_A 126 ML--------------HWVK------------EPEAAIASIHQALKSGGR 149 (279)
T ss_dssp CG--------------GGCS------------CHHHHHHHHHHHEEEEEE
T ss_pred hh--------------hhCc------------CHHHHHHHHHHhcCCCcE
Confidence 32 2211 123678888999999984
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.20 E-value=2.4e-11 Score=113.56 Aligned_cols=105 Identities=10% Similarity=-0.076 Sum_probs=72.5
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCC-----cEEEEEcccccc-----cc--c
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQD-----IIEIRQGSWFGK-----LK--D 262 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~-----rv~~~~gD~~~~-----l~--~ 262 (324)
.+.+|||+|||+|..+..++.. ...+|+|+|+|+.|++.|++.+...+... ++++.++|.... +. .
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~~~--~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~ 125 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYFYG--EIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVF 125 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTC
T ss_pred CCCeEEEEecCCcHhHHHHHhc--CCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhccc
Confidence 3579999999999876666654 34799999999999999999987766431 267888877321 11 1
Q ss_pred CCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 263 VEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 263 ~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
..++||+|+|.- +.+|-.. .+ ....++++++++|||||+
T Consensus 126 ~~~~FD~V~~~~--------------~lhy~~~-----~~----~~~~~l~~~~r~LkpGG~ 164 (302)
T 2vdw_A 126 YFGKFNIIDWQF--------------AIHYSFH-----PR----HYATVMNNLSELTASGGK 164 (302)
T ss_dssp CSSCEEEEEEES--------------CGGGTCS-----TT----THHHHHHHHHHHEEEEEE
T ss_pred cCCCeeEEEECc--------------hHHHhCC-----HH----HHHHHHHHHHHHcCCCCE
Confidence 246899999841 1111000 00 124789999999999995
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.20 E-value=2e-11 Score=106.53 Aligned_cols=100 Identities=14% Similarity=0.140 Sum_probs=72.1
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccccc------CC----
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKD------VE---- 264 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~------~~---- 264 (324)
++.+|||+|||+|.++..+++. .++|+|+|+++.+ .+ .+++++++|+.+.... ..
T Consensus 25 ~g~~VLDlG~G~G~~s~~la~~---~~~V~gvD~~~~~-----------~~-~~v~~~~~D~~~~~~~~~~~~~~~~~~~ 89 (191)
T 3dou_A 25 KGDAVIEIGSSPGGWTQVLNSL---ARKIISIDLQEME-----------EI-AGVRFIRCDIFKETIFDDIDRALREEGI 89 (191)
T ss_dssp TTCEEEEESCTTCHHHHHHTTT---CSEEEEEESSCCC-----------CC-TTCEEEECCTTSSSHHHHHHHHHHHHTC
T ss_pred CCCEEEEEeecCCHHHHHHHHc---CCcEEEEeccccc-----------cC-CCeEEEEccccCHHHHHHHHHHhhcccC
Confidence 4679999999999999999986 5899999999742 22 3599999998764210 11
Q ss_pred CCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 265 GKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 265 ~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
++||+|++|++....... .. .+ ...++..+.+++.+.++|||||.
T Consensus 90 ~~~D~Vlsd~~~~~~g~~---~~---d~---------~~~~~l~~~~l~~a~~~LkpGG~ 134 (191)
T 3dou_A 90 EKVDDVVSDAMAKVSGIP---SR---DH---------AVSYQIGQRVMEIAVRYLRNGGN 134 (191)
T ss_dssp SSEEEEEECCCCCCCSCH---HH---HH---------HHHHHHHHHHHHHHHHHEEEEEE
T ss_pred CcceEEecCCCcCCCCCc---cc---CH---------HHHHHHHHHHHHHHHHHccCCCE
Confidence 489999999865432210 00 00 01245677899999999999994
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.19 E-value=1.7e-11 Score=103.35 Aligned_cols=91 Identities=15% Similarity=0.199 Sum_probs=72.3
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNP 274 (324)
++.+|||+|||+|.++..+++.. .+|+|+|+++.+++.|+++ .+++++..+| .+. ..++||+|+++.
T Consensus 17 ~~~~vLDiG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~------~~~v~~~~~d--~~~--~~~~~D~v~~~~ 83 (170)
T 3i9f_A 17 KKGVIVDYGCGNGFYCKYLLEFA---TKLYCIDINVIALKEVKEK------FDSVITLSDP--KEI--PDNSVDFILFAN 83 (170)
T ss_dssp CCEEEEEETCTTCTTHHHHHTTE---EEEEEECSCHHHHHHHHHH------CTTSEEESSG--GGS--CTTCEEEEEEES
T ss_pred CCCeEEEECCCCCHHHHHHHhhc---CeEEEEeCCHHHHHHHHHh------CCCcEEEeCC--CCC--CCCceEEEEEcc
Confidence 45699999999999999999974 4999999999999999988 2469999999 222 246899999975
Q ss_pred CCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 275 PYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
.+. |-+ ....+++++.+.|||||+
T Consensus 84 ~l~--------------~~~------------~~~~~l~~~~~~L~pgG~ 107 (170)
T 3i9f_A 84 SFH--------------DMD------------DKQHVISEVKRILKDDGR 107 (170)
T ss_dssp CST--------------TCS------------CHHHHHHHHHHHEEEEEE
T ss_pred chh--------------ccc------------CHHHHHHHHHHhcCCCCE
Confidence 442 211 123688999999999984
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.19 E-value=3.1e-11 Score=105.61 Aligned_cols=92 Identities=18% Similarity=0.173 Sum_probs=71.8
Q ss_pred CCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccc---cccCCCCeeEEEE
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGK---LKDVEGKLSGVVS 272 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~---l~~~~~~fDlIVs 272 (324)
+.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|+++ .++.+..+|+.+. .....++||+|++
T Consensus 53 ~~~vLdiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~~~~~fD~v~~ 122 (227)
T 3e8s_A 53 PERVLDLGCGEGWLLRALADR---GIEAVGVDGDRTLVDAARAA-------GAGEVHLASYAQLAEAKVPVGKDYDLICA 122 (227)
T ss_dssp CSEEEEETCTTCHHHHHHHTT---TCEEEEEESCHHHHHHHHHT-------CSSCEEECCHHHHHTTCSCCCCCEEEEEE
T ss_pred CCEEEEeCCCCCHHHHHHHHC---CCEEEEEcCCHHHHHHHHHh-------cccccchhhHHhhcccccccCCCccEEEE
Confidence 579999999999999999886 46999999999999999987 3477888887664 1122346999999
Q ss_pred cCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 273 NPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 273 NPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
+..+. ..+ ...+++++.++|||||+
T Consensus 123 ~~~l~-~~~--------------------------~~~~l~~~~~~L~pgG~ 147 (227)
T 3e8s_A 123 NFALL-HQD--------------------------IIELLSAMRTLLVPGGA 147 (227)
T ss_dssp ESCCC-SSC--------------------------CHHHHHHHHHTEEEEEE
T ss_pred Cchhh-hhh--------------------------HHHHHHHHHHHhCCCeE
Confidence 86654 111 12578889999999984
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.19 E-value=7.2e-11 Score=109.24 Aligned_cols=92 Identities=18% Similarity=0.248 Sum_probs=68.1
Q ss_pred HHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCC-CcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccc
Q 020573 179 MVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGS-KGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWF 257 (324)
Q Consensus 179 lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p-~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~ 257 (324)
+++.+.+.+ ...++.+|||+|||+|.++..+++.... +++|+|+|+|+.+++.|++|. .++++++++|+.
T Consensus 30 i~~~iv~~~----~~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~-----~~~v~~i~~D~~ 100 (279)
T 3uzu_A 30 VIDAIVAAI----RPERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF-----GELLELHAGDAL 100 (279)
T ss_dssp HHHHHHHHH----CCCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH-----GGGEEEEESCGG
T ss_pred HHHHHHHhc----CCCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc-----CCCcEEEECChh
Confidence 345555554 2335679999999999999999998522 245999999999999999993 246999999998
Q ss_pred ccc-ccCCC----CeeEEEEcCCCCCC
Q 020573 258 GKL-KDVEG----KLSGVVSNPPYIPS 279 (324)
Q Consensus 258 ~~l-~~~~~----~fDlIVsNPPYi~~ 279 (324)
+.. ..... ..+.||+|+||..+
T Consensus 101 ~~~~~~~~~~~~~~~~~vv~NlPY~is 127 (279)
T 3uzu_A 101 TFDFGSIARPGDEPSLRIIGNLPYNIS 127 (279)
T ss_dssp GCCGGGGSCSSSSCCEEEEEECCHHHH
T ss_pred cCChhHhcccccCCceEEEEccCcccc
Confidence 732 22111 34689999999643
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=99.18 E-value=2e-11 Score=111.78 Aligned_cols=80 Identities=25% Similarity=0.259 Sum_probs=66.6
Q ss_pred CeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHc-------C-CCCcEEEEEcccccccccCCCCee
Q 020573 197 GFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRY-------G-LQDIIEIRQGSWFGKLKDVEGKLS 268 (324)
Q Consensus 197 ~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~-------g-l~~rv~~~~gD~~~~l~~~~~~fD 268 (324)
.+|||+|||+|..++.+|+. +++|+++|+++.+++++++|+++. + +.++++++++|..+.+....++||
T Consensus 90 ~~VLDl~~G~G~dal~lA~~---g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L~~~~~~fD 166 (258)
T 2oyr_A 90 PDVVDATAGLGRDAFVLASV---GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQ 166 (258)
T ss_dssp CCEEETTCTTCHHHHHHHHH---TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCCS
T ss_pred CEEEEcCCcCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHHHhCcccCC
Confidence 69999999999999999997 258999999999988888887643 2 335799999999886655445799
Q ss_pred EEEEcCCCCCC
Q 020573 269 GVVSNPPYIPS 279 (324)
Q Consensus 269 lIVsNPPYi~~ 279 (324)
+|++||||-..
T Consensus 167 vV~lDP~y~~~ 177 (258)
T 2oyr_A 167 VVYLDPMFPHK 177 (258)
T ss_dssp EEEECCCCCCC
T ss_pred EEEEcCCCCCc
Confidence 99999999543
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.17 E-value=2.6e-10 Score=104.89 Aligned_cols=101 Identities=10% Similarity=0.081 Sum_probs=75.8
Q ss_pred CCeEEEEcCCc---cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccc---------ccC
Q 020573 196 DGFWVDLGTGS---GAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKL---------KDV 263 (324)
Q Consensus 196 ~~~VLDLGcGs---G~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l---------~~~ 263 (324)
..+|||+|||+ |.++..+++.. ++.+|+++|+|+.+++.|++++.. .++++++++|+.+.. ..+
T Consensus 78 ~~~vLDlGcG~pt~G~~~~~~~~~~-p~~~v~~vD~sp~~l~~Ar~~~~~---~~~v~~~~~D~~~~~~~~~~~~~~~~~ 153 (274)
T 2qe6_A 78 ISQFLDLGSGLPTVQNTHEVAQSVN-PDARVVYVDIDPMVLTHGRALLAK---DPNTAVFTADVRDPEYILNHPDVRRMI 153 (274)
T ss_dssp CCEEEEETCCSCCSSCHHHHHHHHC-TTCEEEEEESSHHHHHHHHHHHTT---CTTEEEEECCTTCHHHHHHSHHHHHHC
T ss_pred CCEEEEECCCCCCCChHHHHHHHhC-CCCEEEEEECChHHHHHHHHhcCC---CCCeEEEEeeCCCchhhhccchhhccC
Confidence 36899999999 99887776664 789999999999999999998843 346999999997631 011
Q ss_pred -CCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 264 -EGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 264 -~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
..+||+|+++ .+..|-|.- ....+++++.+.|||||+
T Consensus 154 d~~~~d~v~~~--------------~vlh~~~d~----------~~~~~l~~~~~~L~pGG~ 191 (274)
T 2qe6_A 154 DFSRPAAIMLV--------------GMLHYLSPD----------VVDRVVGAYRDALAPGSY 191 (274)
T ss_dssp CTTSCCEEEET--------------TTGGGSCTT----------THHHHHHHHHHHSCTTCE
T ss_pred CCCCCEEEEEe--------------chhhhCCcH----------HHHHHHHHHHHhCCCCcE
Confidence 1479999995 222332221 134789999999999995
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.16 E-value=9.6e-11 Score=102.18 Aligned_cols=92 Identities=11% Similarity=-0.008 Sum_probs=70.9
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNP 274 (324)
++.+|||+|||+|.++..+ ...+|+|+|+|+.+++.|+++. .+++++++|+.+. +...++||+|+++-
T Consensus 36 ~~~~vLdiG~G~G~~~~~l-----~~~~v~~vD~s~~~~~~a~~~~------~~~~~~~~d~~~~-~~~~~~fD~v~~~~ 103 (211)
T 2gs9_A 36 PGESLLEVGAGTGYWLRRL-----PYPQKVGVEPSEAMLAVGRRRA------PEATWVRAWGEAL-PFPGESFDVVLLFT 103 (211)
T ss_dssp CCSEEEEETCTTCHHHHHC-----CCSEEEEECCCHHHHHHHHHHC------TTSEEECCCTTSC-CSCSSCEEEEEEES
T ss_pred CCCeEEEECCCCCHhHHhC-----CCCeEEEEeCCHHHHHHHHHhC------CCcEEEEcccccC-CCCCCcEEEEEEcC
Confidence 5679999999999998876 1139999999999999999886 3589999998763 32346899999963
Q ss_pred CCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 275 PYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
.. .|-+ ....+++++.++|||||+
T Consensus 104 ~l--------------~~~~------------~~~~~l~~~~~~L~pgG~ 127 (211)
T 2gs9_A 104 TL--------------EFVE------------DVERVLLEARRVLRPGGA 127 (211)
T ss_dssp CT--------------TTCS------------CHHHHHHHHHHHEEEEEE
T ss_pred hh--------------hhcC------------CHHHHHHHHHHHcCCCCE
Confidence 32 2211 123688899999999984
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=3.8e-11 Score=110.79 Aligned_cols=102 Identities=12% Similarity=-0.022 Sum_probs=70.6
Q ss_pred CCCeEEEEcCCccHHHHHHH----HHhCCCcEE--EEEeCCHHHHHHHHHHHHHc-CCCCcEEE--EEcccccccc----
Q 020573 195 RDGFWVDLGTGSGAIAIGIA----RVLGSKGSI--IAVDLNPLAAAVAAFNAQRY-GLQDIIEI--RQGSWFGKLK---- 261 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la----~~~~p~~~V--~gvDis~~al~~Ar~N~~~~-gl~~rv~~--~~gD~~~~l~---- 261 (324)
++.+|||+|||+|.++..++ ..+ ++.+| +|+|.|++|++.|++++... ++. ++.+ ..++..+...
T Consensus 52 ~~~~VLDiG~GtG~~~~~~l~~l~~~~-~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~ 129 (292)
T 2aot_A 52 SEIKILSIGGGAGEIDLQILSKVQAQY-PGVCINNEVVEPSAEQIAKYKELVAKTSNLE-NVKFAWHKETSSEYQSRMLE 129 (292)
T ss_dssp SEEEEEEETCTTSHHHHHHHHHHHHHS-TTCEEEEEEECSCHHHHHHHHHHHHTCSSCT-TEEEEEECSCHHHHHHHHHT
T ss_pred CCCeEEEEcCCCCHHHHHHHHHHHhhC-CCceeeEEEEeCCHHHHHHHHHHHHhccCCC-cceEEEEecchhhhhhhhcc
Confidence 45699999999998766443 332 55654 99999999999999998754 443 3544 4555543210
Q ss_pred -cCCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 262 -DVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 262 -~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
...++||+|+++ .+..|-+. ...+++++.++|||||+
T Consensus 130 ~~~~~~fD~V~~~--------------~~l~~~~d------------~~~~l~~~~r~LkpgG~ 167 (292)
T 2aot_A 130 KKELQKWDFIHMI--------------QMLYYVKD------------IPATLKFFHSLLGTNAK 167 (292)
T ss_dssp TTCCCCEEEEEEE--------------SCGGGCSC------------HHHHHHHHHHTEEEEEE
T ss_pred ccCCCceeEEEEe--------------eeeeecCC------------HHHHHHHHHHHcCCCcE
Confidence 124689999994 33344332 34688999999999995
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.15 E-value=7.3e-11 Score=108.48 Aligned_cols=122 Identities=11% Similarity=0.044 Sum_probs=79.2
Q ss_pred HHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHc-------------
Q 020573 177 ELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRY------------- 243 (324)
Q Consensus 177 e~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~------------- 243 (324)
+...+.+.+.+ .. ...++.+|||+|||+|.+++.++.. +..+|+|+|+|+.|++.|+++++..
T Consensus 55 ~~~~~~l~~~l-~~-~~~~~~~vLDiGcG~G~~~~l~~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v 130 (289)
T 2g72_A 55 PWKLRCLAQTF-AT-GEVSGRTLIDIGSGPTVYQLLSACS--HFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHA 130 (289)
T ss_dssp HHHHHHHHHHH-HT-SCSCCSEEEEETCTTCCGGGTTGGG--GCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHh-CC-CCCCCCeEEEECCCcChHHHHhhcc--CCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHH
Confidence 33445555544 21 1234679999999999965544443 3469999999999999999865421
Q ss_pred ----CCCC------------cEEEEEcccccccc-----cCCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCC
Q 020573 244 ----GLQD------------IIEIRQGSWFGKLK-----DVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGV 302 (324)
Q Consensus 244 ----gl~~------------rv~~~~gD~~~~l~-----~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~ 302 (324)
+... .++++++|+.+.++ ...++||+|++|-- ..|-+
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~--------------l~~~~-------- 188 (289)
T 2g72_A 131 CLIEGKGECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFC--------------LEAVS-------- 188 (289)
T ss_dssp HHHHCSCCCHHHHHHHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESC--------------HHHHC--------
T ss_pred HHhcCcccchhhhHHHHHhhhceEEecccCCCCCccccccCCCCCCEEEehhh--------------hhhhc--------
Confidence 1100 15677888876332 11356999999721 12200
Q ss_pred CcHHHHHHHHHHHhcccCCCCC
Q 020573 303 DGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 303 dGl~~~~~il~~a~~~LkpgG~ 324 (324)
..+..+..+++++.++|||||+
T Consensus 189 ~~~~~~~~~l~~~~r~LkpGG~ 210 (289)
T 2g72_A 189 PDLASFQRALDHITTLLRPGGH 210 (289)
T ss_dssp SSHHHHHHHHHHHHTTEEEEEE
T ss_pred CCHHHHHHHHHHHHHhcCCCCE
Confidence 1134567899999999999995
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.14 E-value=1.1e-10 Score=101.12 Aligned_cols=53 Identities=19% Similarity=0.209 Sum_probs=43.1
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCC-CcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccc
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGS-KGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGK 259 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p-~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~ 259 (324)
++.+|||+|||+|.++..+++.+++ +++|+|+|+|+.+ .. .+++++++|+.+.
T Consensus 22 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~-----------~~-~~v~~~~~d~~~~ 75 (201)
T 2plw_A 22 KNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD-----------PI-PNVYFIQGEIGKD 75 (201)
T ss_dssp TTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC-----------CC-TTCEEEECCTTTT
T ss_pred CCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC-----------CC-CCceEEEccccch
Confidence 4568999999999999999998732 6899999999831 12 3599999998764
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.14 E-value=8.2e-11 Score=105.13 Aligned_cols=99 Identities=15% Similarity=0.104 Sum_probs=74.7
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccC----CCCeeEE
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDV----EGKLSGV 270 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~----~~~fDlI 270 (324)
++.+|||+|||+|.++..+++.. + +|+|+|+|+.+++.|++++. ..+++++++|+.+..... ...||+|
T Consensus 56 ~~~~vLD~GcG~G~~~~~la~~~-~--~v~gvD~s~~~~~~a~~~~~----~~~~~~~~~d~~~~~~~~~~~~~~~~d~v 128 (245)
T 3ggd_A 56 PELPLIDFACGNGTQTKFLSQFF-P--RVIGLDVSKSALEIAAKENT----AANISYRLLDGLVPEQAAQIHSEIGDANI 128 (245)
T ss_dssp TTSCEEEETCTTSHHHHHHHHHS-S--CEEEEESCHHHHHHHHHHSC----CTTEEEEECCTTCHHHHHHHHHHHCSCEE
T ss_pred CCCeEEEEcCCCCHHHHHHHHhC-C--CEEEEECCHHHHHHHHHhCc----ccCceEEECcccccccccccccccCccEE
Confidence 45789999999999999999985 3 89999999999999999862 236999999998732110 1248999
Q ss_pred EEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 271 VSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 271 VsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
+++-.+. |-+. +....+++++.++|||||+
T Consensus 129 ~~~~~~~--------------~~~~----------~~~~~~l~~~~~~LkpgG~ 158 (245)
T 3ggd_A 129 YMRTGFH--------------HIPV----------EKRELLGQSLRILLGKQGA 158 (245)
T ss_dssp EEESSST--------------TSCG----------GGHHHHHHHHHHHHTTTCE
T ss_pred EEcchhh--------------cCCH----------HHHHHHHHHHHHHcCCCCE
Confidence 9974332 2111 1234688999999999994
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=99.12 E-value=1.4e-10 Score=105.58 Aligned_cols=89 Identities=16% Similarity=0.209 Sum_probs=67.5
Q ss_pred HHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccc
Q 020573 179 MVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFG 258 (324)
Q Consensus 179 lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~ 258 (324)
+++.+.+.+ ...++.+|||+|||+|.++..+++. +..+|+|+|+|+.+++.+++| + ..+++++++|+.+
T Consensus 19 i~~~iv~~~----~~~~~~~VLDiG~G~G~lt~~L~~~--~~~~v~avEid~~~~~~~~~~----~-~~~v~~i~~D~~~ 87 (249)
T 3ftd_A 19 VLKKIAEEL----NIEEGNTVVEVGGGTGNLTKVLLQH--PLKKLYVIELDREMVENLKSI----G-DERLEVINEDASK 87 (249)
T ss_dssp HHHHHHHHT----TCCTTCEEEEEESCHHHHHHHHTTS--CCSEEEEECCCHHHHHHHTTS----C-CTTEEEECSCTTT
T ss_pred HHHHHHHhc----CCCCcCEEEEEcCchHHHHHHHHHc--CCCeEEEEECCHHHHHHHHhc----c-CCCeEEEEcchhh
Confidence 455555544 2335679999999999999999986 357999999999999999987 2 2469999999987
Q ss_pred c-cccCCCCeeEEEEcCCCCCC
Q 020573 259 K-LKDVEGKLSGVVSNPPYIPS 279 (324)
Q Consensus 259 ~-l~~~~~~fDlIVsNPPYi~~ 279 (324)
. +....+.+ .|++||||..+
T Consensus 88 ~~~~~~~~~~-~vv~NlPy~i~ 108 (249)
T 3ftd_A 88 FPFCSLGKEL-KVVGNLPYNVA 108 (249)
T ss_dssp CCGGGSCSSE-EEEEECCTTTH
T ss_pred CChhHccCCc-EEEEECchhcc
Confidence 4 22222234 89999999643
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.11 E-value=1.5e-10 Score=104.90 Aligned_cols=71 Identities=17% Similarity=0.198 Sum_probs=59.7
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEc
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN 273 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsN 273 (324)
++.+|||+|||+|.++..+++.+ ++.+|+|+|+|+.+++.|+++. .++.+..+|+.+ ++...++||+|+++
T Consensus 85 ~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~------~~~~~~~~d~~~-~~~~~~~fD~v~~~ 155 (269)
T 1p91_A 85 KATAVLDIGCGEGYYTHAFADAL-PEITTFGLDVSKVAIKAAAKRY------PQVTFCVASSHR-LPFSDTSMDAIIRI 155 (269)
T ss_dssp TCCEEEEETCTTSTTHHHHHHTC-TTSEEEEEESCHHHHHHHHHHC------TTSEEEECCTTS-CSBCTTCEEEEEEE
T ss_pred CCCEEEEECCCCCHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHhC------CCcEEEEcchhh-CCCCCCceeEEEEe
Confidence 46799999999999999999976 6689999999999999998874 348999999875 33234689999996
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=99.08 E-value=8.6e-11 Score=107.14 Aligned_cols=91 Identities=18% Similarity=0.176 Sum_probs=66.3
Q ss_pred HHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccc
Q 020573 179 MVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFG 258 (324)
Q Consensus 179 lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~ 258 (324)
+++.+.+.+ ...++.+|||+|||+|.++. +++ . ...+|+|+|+|+.+++.+++|+..+ ++++++++|+.+
T Consensus 9 i~~~iv~~~----~~~~~~~VLEIG~G~G~lt~-l~~-~-~~~~v~avEid~~~~~~a~~~~~~~---~~v~~i~~D~~~ 78 (252)
T 1qyr_A 9 VIDSIVSAI----NPQKGQAMVEIGPGLAALTE-PVG-E-RLDQLTVIELDRDLAARLQTHPFLG---PKLTIYQQDAMT 78 (252)
T ss_dssp HHHHHHHHH----CCCTTCCEEEECCTTTTTHH-HHH-T-TCSCEEEECCCHHHHHHHHTCTTTG---GGEEEECSCGGG
T ss_pred HHHHHHHhc----CCCCcCEEEEECCCCcHHHH-hhh-C-CCCeEEEEECCHHHHHHHHHHhccC---CceEEEECchhh
Confidence 445555544 23346789999999999999 654 2 3334999999999999999887543 369999999987
Q ss_pred c-cccC---CCCeeEEEEcCCCCCC
Q 020573 259 K-LKDV---EGKLSGVVSNPPYIPS 279 (324)
Q Consensus 259 ~-l~~~---~~~fDlIVsNPPYi~~ 279 (324)
. +... .+..|.||+|+||..+
T Consensus 79 ~~~~~~~~~~~~~~~vvsNlPY~i~ 103 (252)
T 1qyr_A 79 FNFGELAEKMGQPLRVFGNLPYNIS 103 (252)
T ss_dssp CCHHHHHHHHTSCEEEEEECCTTTH
T ss_pred CCHHHhhcccCCceEEEECCCCCcc
Confidence 3 2211 1245899999999754
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=99.08 E-value=1e-10 Score=110.82 Aligned_cols=99 Identities=10% Similarity=0.103 Sum_probs=75.0
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEc
Q 020573 194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN 273 (324)
Q Consensus 194 ~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsN 273 (324)
....+|||+|||+|.++..+++.+ ++.+++++|+ +.++. +++++..++.++++++.+|+++.++ +||+|+++
T Consensus 183 ~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~--~~~~~~~~~~~~v~~~~~d~~~~~p----~~D~v~~~ 254 (348)
T 3lst_A 183 PATGTVADVGGGRGGFLLTVLREH-PGLQGVLLDR-AEVVA--RHRLDAPDVAGRWKVVEGDFLREVP----HADVHVLK 254 (348)
T ss_dssp CSSEEEEEETCTTSHHHHHHHHHC-TTEEEEEEEC-HHHHT--TCCCCCGGGTTSEEEEECCTTTCCC----CCSEEEEE
T ss_pred cCCceEEEECCccCHHHHHHHHHC-CCCEEEEecC-HHHhh--cccccccCCCCCeEEEecCCCCCCC----CCcEEEEe
Confidence 346799999999999999999986 8899999999 45544 4444445667789999999985443 79999995
Q ss_pred CCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 274 PPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
- +.+|-+. +....+++++.+.|||||+
T Consensus 255 ~--------------vlh~~~d----------~~~~~~L~~~~~~LkpgG~ 281 (348)
T 3lst_A 255 R--------------ILHNWGD----------EDSVRILTNCRRVMPAHGR 281 (348)
T ss_dssp S--------------CGGGSCH----------HHHHHHHHHHHHTCCTTCE
T ss_pred h--------------hccCCCH----------HHHHHHHHHHHHhcCCCCE
Confidence 2 2222111 2234789999999999994
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=1.8e-10 Score=105.11 Aligned_cols=73 Identities=11% Similarity=0.043 Sum_probs=65.6
Q ss_pred CCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEc
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN 273 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsN 273 (324)
+.+|||||||+|-+++.++... +..+|+|+|+|+.++++++.|+..+|+. ..+...|...... .++||++++|
T Consensus 133 p~~VLDLGCG~GpLAl~~~~~~-p~a~y~a~DId~~~le~a~~~l~~~g~~--~~~~v~D~~~~~p--~~~~DvaL~l 205 (281)
T 3lcv_B 133 PNTLRDLACGLNPLAAPWMGLP-AETVYIASDIDARLVGFVDEALTRLNVP--HRTNVADLLEDRL--DEPADVTLLL 205 (281)
T ss_dssp CSEEEETTCTTGGGCCTTTTCC-TTCEEEEEESBHHHHHHHHHHHHHTTCC--EEEEECCTTTSCC--CSCCSEEEET
T ss_pred CceeeeeccCccHHHHHHHhhC-CCCEEEEEeCCHHHHHHHHHHHHhcCCC--ceEEEeeecccCC--CCCcchHHHH
Confidence 5699999999999999999974 8899999999999999999999999985 8899999886544 4789999996
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.06 E-value=5.7e-10 Score=95.97 Aligned_cols=103 Identities=17% Similarity=0.127 Sum_probs=70.9
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCC--------cEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEE-Ecccccccc----
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSK--------GSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIR-QGSWFGKLK---- 261 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~--------~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~-~gD~~~~l~---- 261 (324)
++.+|||+|||+|.+++.+++.++.. .+|+|+|+|+.+ .+ .+++++ ++|+.+...
T Consensus 22 ~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~-----------~~-~~~~~~~~~d~~~~~~~~~~ 89 (196)
T 2nyu_A 22 PGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF-----------PL-EGATFLCPADVTDPRTSQRI 89 (196)
T ss_dssp TTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC-----------CC-TTCEEECSCCTTSHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc-----------cC-CCCeEEEeccCCCHHHHHHH
Confidence 46799999999999999999987432 799999999832 22 358999 999865311
Q ss_pred --cC-CCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 262 --DV-EGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 262 --~~-~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
.. .++||+|++|+++...... .. .++ ..+.....+++++.++|||||+
T Consensus 90 ~~~~~~~~fD~V~~~~~~~~~~~~-~~-----~~~---------~~~~~~~~~l~~~~~~LkpgG~ 140 (196)
T 2nyu_A 90 LEVLPGRRADVILSDMAPNATGFR-DL-----DHD---------RLISLCLTLLSVTPDILQPGGT 140 (196)
T ss_dssp HHHSGGGCEEEEEECCCCCCCSCH-HH-----HHH---------HHHHHHHHHHHHHHHHEEEEEE
T ss_pred HHhcCCCCCcEEEeCCCCCCCCCc-cc-----CHH---------HHHHHHHHHHHHHHHHhcCCCE
Confidence 01 2489999999754321110 00 000 0134456889999999999994
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.04 E-value=3.3e-10 Score=102.47 Aligned_cols=94 Identities=15% Similarity=0.065 Sum_probs=71.0
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNP 274 (324)
++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|+++.. . . ++++|+.+. +...++||+|+++.
T Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~l~~a~~~~~-----~-~-~~~~d~~~~-~~~~~~fD~v~~~~ 122 (260)
T 2avn_A 54 NPCRVLDLGGGTGKWSLFLQER---GFEVVLVDPSKEMLEVAREKGV-----K-N-VVEAKAEDL-PFPSGAFEAVLALG 122 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHHTT---TCEEEEEESCHHHHHHHHHHTC-----S-C-EEECCTTSC-CSCTTCEEEEEECS
T ss_pred CCCeEEEeCCCcCHHHHHHHHc---CCeEEEEeCCHHHHHHHHhhcC-----C-C-EEECcHHHC-CCCCCCEEEEEEcc
Confidence 4679999999999999999885 3699999999999999998754 1 1 788888763 32346899999953
Q ss_pred CCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 275 PYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
... .+.+ ....+++++.++|||||+
T Consensus 123 ~~~-------------~~~~------------~~~~~l~~~~~~LkpgG~ 147 (260)
T 2avn_A 123 DVL-------------SYVE------------NKDKAFSEIRRVLVPDGL 147 (260)
T ss_dssp SHH-------------HHCS------------CHHHHHHHHHHHEEEEEE
T ss_pred hhh-------------hccc------------cHHHHHHHHHHHcCCCeE
Confidence 211 1101 134688999999999984
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=99.03 E-value=1e-10 Score=107.10 Aligned_cols=92 Identities=11% Similarity=-0.097 Sum_probs=73.0
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHc--CC-CCcEEEEEcccccccccCCCCeeEEE
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRY--GL-QDIIEIRQGSWFGKLKDVEGKLSGVV 271 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~--gl-~~rv~~~~gD~~~~l~~~~~~fDlIV 271 (324)
.+.+|||+|||+|.++..+++. + .+|+++|+++.+++.|++++... ++ .++++++.+|..+.+ ++||+|+
T Consensus 72 ~~~~VL~iG~G~G~~~~~ll~~--~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~----~~fD~Ii 144 (262)
T 2cmg_A 72 ELKEVLIVDGFDLELAHQLFKY--D-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI----KKYDLIF 144 (262)
T ss_dssp CCCEEEEESSCCHHHHHHHTTS--S-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC----CCEEEEE
T ss_pred CCCEEEEEeCCcCHHHHHHHhC--C-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH----hhCCEEE
Confidence 4579999999999999999886 4 89999999999999999876431 22 357999999998754 5899999
Q ss_pred EcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 272 SNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 272 sNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
+|.+ +|. .+++.+.+.|||||+
T Consensus 145 ~d~~-----------------dp~--------------~~~~~~~~~L~pgG~ 166 (262)
T 2cmg_A 145 CLQE-----------------PDI--------------HRIDGLKRMLKEDGV 166 (262)
T ss_dssp ESSC-----------------CCH--------------HHHHHHHTTEEEEEE
T ss_pred ECCC-----------------ChH--------------HHHHHHHHhcCCCcE
Confidence 9732 111 167788899999984
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.01 E-value=4.3e-10 Score=98.50 Aligned_cols=93 Identities=16% Similarity=0.086 Sum_probs=71.1
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccc-cccCCCCeeEEEEc
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGK-LKDVEGKLSGVVSN 273 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~-l~~~~~~fDlIVsN 273 (324)
++.+|||+|||+|.++..+++. + .+|+|+|+|+.+++.|+++. .+++.+|+.+. .....++||+|+++
T Consensus 32 ~~~~vLdiG~G~G~~~~~l~~~--~-~~~~~~D~~~~~~~~~~~~~--------~~~~~~d~~~~~~~~~~~~fD~v~~~ 100 (230)
T 3cc8_A 32 EWKEVLDIGCSSGALGAAIKEN--G-TRVSGIEAFPEAAEQAKEKL--------DHVVLGDIETMDMPYEEEQFDCVIFG 100 (230)
T ss_dssp TCSEEEEETCTTSHHHHHHHTT--T-CEEEEEESSHHHHHHHHTTS--------SEEEESCTTTCCCCSCTTCEEEEEEE
T ss_pred CCCcEEEeCCCCCHHHHHHHhc--C-CeEEEEeCCHHHHHHHHHhC--------CcEEEcchhhcCCCCCCCccCEEEEC
Confidence 4679999999999999999886 3 79999999999999998763 36888998753 22224689999996
Q ss_pred CCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 274 PPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
-. ..|-+. ...+++++.++|||||+
T Consensus 101 ~~--------------l~~~~~------------~~~~l~~~~~~L~~gG~ 125 (230)
T 3cc8_A 101 DV--------------LEHLFD------------PWAVIEKVKPYIKQNGV 125 (230)
T ss_dssp SC--------------GGGSSC------------HHHHHHHTGGGEEEEEE
T ss_pred Ch--------------hhhcCC------------HHHHHHHHHHHcCCCCE
Confidence 22 122221 13688999999999984
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=2.9e-10 Score=114.98 Aligned_cols=74 Identities=20% Similarity=0.224 Sum_probs=63.0
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccccc-CCCCeeEEEE
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKD-VEGKLSGVVS 272 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~-~~~~fDlIVs 272 (324)
++.+|||+|||.|.++..||+. +++|+|||.++.++++|+..+...|.. ++++.++++.+.... ..++||+|++
T Consensus 66 ~~~~vLDvGCG~G~~~~~la~~---ga~V~giD~~~~~i~~a~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~fD~v~~ 140 (569)
T 4azs_A 66 RPLNVLDLGCAQGFFSLSLASK---GATIVGIDFQQENINVCRALAEENPDF-AAEFRVGRIEEVIAALEEGEFDLAIG 140 (569)
T ss_dssp SCCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHTSTTS-EEEEEECCHHHHHHHCCTTSCSEEEE
T ss_pred CCCeEEEECCCCcHHHHHHHhC---CCEEEEECCCHHHHHHHHHHHHhcCCC-ceEEEECCHHHHhhhccCCCccEEEE
Confidence 4569999999999999999996 489999999999999999999888754 499999998764322 2468999999
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=9.2e-11 Score=113.48 Aligned_cols=98 Identities=19% Similarity=0.252 Sum_probs=68.1
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEc
Q 020573 194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN 273 (324)
Q Consensus 194 ~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsN 273 (324)
.++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|+++ ++.....+...+..+.++...++||+|+++
T Consensus 106 ~~~~~VLDiGcG~G~~~~~l~~~---g~~v~gvD~s~~~~~~a~~~----~~~~~~~~~~~~~~~~l~~~~~~fD~I~~~ 178 (416)
T 4e2x_A 106 GPDPFIVEIGCNDGIMLRTIQEA---GVRHLGFEPSSGVAAKAREK----GIRVRTDFFEKATADDVRRTEGPANVIYAA 178 (416)
T ss_dssp SSSCEEEEETCTTTTTHHHHHHT---TCEEEEECCCHHHHHHHHTT----TCCEECSCCSHHHHHHHHHHHCCEEEEEEE
T ss_pred CCCCEEEEecCCCCHHHHHHHHc---CCcEEEECCCHHHHHHHHHc----CCCcceeeechhhHhhcccCCCCEEEEEEC
Confidence 35679999999999999999985 36999999999999999876 333211111111111122123689999995
Q ss_pred CCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 274 PPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
.+..|-| ....+++++.++|||||+
T Consensus 179 --------------~vl~h~~------------d~~~~l~~~~r~LkpgG~ 203 (416)
T 4e2x_A 179 --------------NTLCHIP------------YVQSVLEGVDALLAPDGV 203 (416)
T ss_dssp --------------SCGGGCT------------THHHHHHHHHHHEEEEEE
T ss_pred --------------ChHHhcC------------CHHHHHHHHHHHcCCCeE
Confidence 2234432 245789999999999995
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=2e-09 Score=109.63 Aligned_cols=103 Identities=21% Similarity=0.173 Sum_probs=75.2
Q ss_pred CCCeEEEEcCCccHH---HHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEE
Q 020573 195 RDGFWVDLGTGSGAI---AIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVV 271 (324)
Q Consensus 195 ~~~~VLDLGcGsG~i---ai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIV 271 (324)
....|+|+|||+|-+ ++.+++..+...+|+|||.|+. ...|+++++.+++.++|++++||..+.- +.+++|+||
T Consensus 357 ~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~-A~~a~~~v~~N~~~dkVtVI~gd~eev~--LPEKVDIIV 433 (637)
T 4gqb_A 357 NVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPN-AVVTLENWQFEEWGSQVTVVSSDMREWV--APEKADIIV 433 (637)
T ss_dssp CEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHH-HHHHHHHHHHHTTGGGEEEEESCTTTCC--CSSCEEEEE
T ss_pred CCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHH-HHHHHHHHHhccCCCeEEEEeCcceecc--CCcccCEEE
Confidence 445799999999998 5555554333348999999985 5579999999999999999999998742 236999999
Q ss_pred EcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 272 SNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 272 sNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
|- +....+.+| ++ + .++..+-++|||||+
T Consensus 434 SE-----------wMG~fLl~E----------~m--l-evL~Ardr~LKPgGi 462 (637)
T 4gqb_A 434 SE-----------LLGSFADNE----------LS--P-ECLDGAQHFLKDDGV 462 (637)
T ss_dssp CC-----------CCBTTBGGG----------CH--H-HHHHHHGGGEEEEEE
T ss_pred EE-----------cCccccccc----------CC--H-HHHHHHHHhcCCCcE
Confidence 91 111111222 22 2 466778899999984
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=1.7e-09 Score=103.40 Aligned_cols=93 Identities=20% Similarity=0.139 Sum_probs=72.7
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNP 274 (324)
...+|||+|||+|.++..+++.+ |+.+++++|+ +.+++.|+++ ++++++.+|++++++. . |+|+++-
T Consensus 203 ~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~~~p~---~-D~v~~~~ 269 (368)
T 3reo_A 203 GLTTIVDVGGGTGAVASMIVAKY-PSINAINFDL-PHVIQDAPAF-------SGVEHLGGDMFDGVPK---G-DAIFIKW 269 (368)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHTTCCCC-------TTEEEEECCTTTCCCC---C-SEEEEES
T ss_pred CCCEEEEeCCCcCHHHHHHHHhC-CCCEEEEEeh-HHHHHhhhhc-------CCCEEEecCCCCCCCC---C-CEEEEec
Confidence 45799999999999999999997 8899999999 8898877642 4699999999985542 3 9999841
Q ss_pred CCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 275 PYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
+.++-+ -+....+++++.+.|||||+
T Consensus 270 --------------vlh~~~----------~~~~~~~l~~~~~~L~pgG~ 295 (368)
T 3reo_A 270 --------------ICHDWS----------DEHCLKLLKNCYAALPDHGK 295 (368)
T ss_dssp --------------CGGGBC----------HHHHHHHHHHHHHHSCTTCE
T ss_pred --------------hhhcCC----------HHHHHHHHHHHHHHcCCCCE
Confidence 212111 12345789999999999994
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=3.1e-09 Score=101.02 Aligned_cols=100 Identities=19% Similarity=0.151 Sum_probs=78.1
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNP 274 (324)
...+|+|+|||+|.+++.+++++ |+.+++..|. |.+++.|++++...+ .+||+++.+|+++... ..+|++++.
T Consensus 179 ~~~~v~DvGgG~G~~~~~l~~~~-p~~~~~~~dl-p~v~~~a~~~~~~~~-~~rv~~~~gD~~~~~~---~~~D~~~~~- 251 (353)
T 4a6d_A 179 VFPLMCDLGGGAGALAKECMSLY-PGCKITVFDI-PEVVWTAKQHFSFQE-EEQIDFQEGDFFKDPL---PEADLYILA- 251 (353)
T ss_dssp GCSEEEEETCTTSHHHHHHHHHC-SSCEEEEEEC-HHHHHHHHHHSCC---CCSEEEEESCTTTSCC---CCCSEEEEE-
T ss_pred cCCeEEeeCCCCCHHHHHHHHhC-CCceeEeccC-HHHHHHHHHhhhhcc-cCceeeecCccccCCC---CCceEEEee-
Confidence 35689999999999999999997 8999999998 889999999886544 5789999999987422 468999882
Q ss_pred CCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 275 PYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
.+.++-| -+....|++++.+.|+|||.
T Consensus 252 -------------~vlh~~~----------d~~~~~iL~~~~~al~pgg~ 278 (353)
T 4a6d_A 252 -------------RVLHDWA----------DGKCSHLLERIYHTCKPGGG 278 (353)
T ss_dssp -------------SSGGGSC----------HHHHHHHHHHHHHHCCTTCE
T ss_pred -------------eecccCC----------HHHHHHHHHHHHhhCCCCCE
Confidence 2222211 12345789999999999994
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=8e-10 Score=105.64 Aligned_cols=124 Identities=13% Similarity=0.060 Sum_probs=90.1
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCC-----CcEEEEEcccccccccCCCCee
Q 020573 194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQ-----DIIEIRQGSWFGKLKDVEGKLS 268 (324)
Q Consensus 194 ~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~-----~rv~~~~gD~~~~l~~~~~~fD 268 (324)
.++.+|||+|+|.|.-+..++... .++.|+++|+++.-+...++|+++++.. +++.+...|.........++||
T Consensus 147 ~pg~~VLD~CAaPGGKT~~la~~~-~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~~~~fD 225 (359)
T 4fzv_A 147 QPGDIVLDLCAAPGGKTLALLQTG-CCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEGDTYD 225 (359)
T ss_dssp CTTEEEEESSCTTCHHHHHHHHTT-CEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHSTTCEE
T ss_pred CCCCEEEEecCCccHHHHHHHHhc-CCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhccccCC
Confidence 357799999999999999999864 6678999999999999999999998764 4688999887653322346899
Q ss_pred EEEEcCCCCCCCCcccchhhhhcccccccccCCCC---cH-HHHHHHHHHHhcccCCCCC
Q 020573 269 GVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVD---GL-DYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 269 lIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~d---Gl-~~~~~il~~a~~~LkpgG~ 324 (324)
.|+.++|+..+.. .+.+.+|.....-..+ .+ ..-+.|++.|.++|||||+
T Consensus 226 ~VLlDaPCSg~g~------g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~ 279 (359)
T 4fzv_A 226 RVLVDVPCTTDRH------SLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGH 279 (359)
T ss_dssp EEEEECCCCCHHH------HTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEE
T ss_pred EEEECCccCCCCC------cccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcE
Confidence 9999999964210 1112233222111111 12 2336899999999999994
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=2.8e-09 Score=101.75 Aligned_cols=93 Identities=19% Similarity=0.136 Sum_probs=72.9
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNP 274 (324)
...+|||+|||+|.++..+++.+ |+.+++++|+ +.+++.|+++ ++++++.+|++++++. + |+|++.
T Consensus 201 ~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~p~--~--D~v~~~- 266 (364)
T 3p9c_A 201 GLGTLVDVGGGVGATVAAIAAHY-PTIKGVNFDL-PHVISEAPQF-------PGVTHVGGDMFKEVPS--G--DTILMK- 266 (364)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHTTCCCC-------TTEEEEECCTTTCCCC--C--SEEEEE-
T ss_pred CCCEEEEeCCCCCHHHHHHHHHC-CCCeEEEecC-HHHHHhhhhc-------CCeEEEeCCcCCCCCC--C--CEEEeh-
Confidence 45799999999999999999997 8899999999 8888877642 4699999999985442 3 999983
Q ss_pred CCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 275 PYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
.+.++-+ -+....+++++.+.|||||+
T Consensus 267 -------------~vlh~~~----------d~~~~~~L~~~~~~L~pgG~ 293 (364)
T 3p9c_A 267 -------------WILHDWS----------DQHCATLLKNCYDALPAHGK 293 (364)
T ss_dssp -------------SCGGGSC----------HHHHHHHHHHHHHHSCTTCE
T ss_pred -------------HHhccCC----------HHHHHHHHHHHHHHcCCCCE
Confidence 2222211 13445789999999999994
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=98.93 E-value=1.2e-09 Score=96.17 Aligned_cols=87 Identities=16% Similarity=0.128 Sum_probs=66.9
Q ss_pred CCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcCC
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPP 275 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNPP 275 (324)
+.+|||+|||+|.++..+++. +|+|+|+.+++.|+++ +++++++|+.+ ++...++||+|+++-.
T Consensus 48 ~~~vLDiG~G~G~~~~~l~~~-------~~vD~s~~~~~~a~~~--------~~~~~~~d~~~-~~~~~~~fD~v~~~~~ 111 (219)
T 1vlm_A 48 EGRGVEIGVGTGRFAVPLKIK-------IGVEPSERMAEIARKR--------GVFVLKGTAEN-LPLKDESFDFALMVTT 111 (219)
T ss_dssp SSCEEEETCTTSTTHHHHTCC-------EEEESCHHHHHHHHHT--------TCEEEECBTTB-CCSCTTCEEEEEEESC
T ss_pred CCcEEEeCCCCCHHHHHHHHH-------hccCCCHHHHHHHHhc--------CCEEEEccccc-CCCCCCCeeEEEEcch
Confidence 569999999999999877542 9999999999999987 38899999866 3333468999999632
Q ss_pred CCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 276 YIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 276 Yi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
+ .|-+ ....+++++.+.|||||+
T Consensus 112 l--------------~~~~------------~~~~~l~~~~~~L~pgG~ 134 (219)
T 1vlm_A 112 I--------------CFVD------------DPERALKEAYRILKKGGY 134 (219)
T ss_dssp G--------------GGSS------------CHHHHHHHHHHHEEEEEE
T ss_pred H--------------hhcc------------CHHHHHHHHHHHcCCCcE
Confidence 1 2211 123688888999999984
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=8.6e-10 Score=102.52 Aligned_cols=98 Identities=14% Similarity=0.095 Sum_probs=69.1
Q ss_pred CCCCeEEEEcCCc------cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEE-EEcccccccccCCCC
Q 020573 194 LRDGFWVDLGTGS------GAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEI-RQGSWFGKLKDVEGK 266 (324)
Q Consensus 194 ~~~~~VLDLGcGs------G~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~-~~gD~~~~l~~~~~~ 266 (324)
.++.+|||+|||+ |. ..+++.++++++|+|+|+++. + .++++ +++|+.+... .++
T Consensus 62 ~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~-------------v-~~v~~~i~gD~~~~~~--~~~ 123 (290)
T 2xyq_A 62 PYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF-------------V-SDADSTLIGDCATVHT--ANK 123 (290)
T ss_dssp CTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC-------------B-CSSSEEEESCGGGCCC--SSC
T ss_pred CCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC-------------C-CCCEEEEECccccCCc--cCc
Confidence 4567999999955 77 445666644689999999987 1 24888 9999987422 368
Q ss_pred eeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 267 LSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 267 fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
||+|++|++...... +. ....+++++++.+++.+.++|||||+
T Consensus 124 fD~Vvsn~~~~~~g~----------~~-----~d~~~~~~l~~~~l~~a~r~LkpGG~ 166 (290)
T 2xyq_A 124 WDLIISDMYDPRTKH----------VT-----KENDSKEGFFTYLCGFIKQKLALGGS 166 (290)
T ss_dssp EEEEEECCCCCC-------------CC-----SCCCCCCTHHHHHHHHHHHHEEEEEE
T ss_pred ccEEEEcCCcccccc----------cc-----ccccchHHHHHHHHHHHHHhcCCCcE
Confidence 999999964211110 00 11234567778999999999999995
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=1.5e-09 Score=104.87 Aligned_cols=92 Identities=14% Similarity=0.118 Sum_probs=69.3
Q ss_pred CCCeEEEEcCC------ccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccC-----
Q 020573 195 RDGFWVDLGTG------SGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDV----- 263 (324)
Q Consensus 195 ~~~~VLDLGcG------sG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~----- 263 (324)
++.+|||+||| +|..++.+++.+.|+++|+|+|+|+.+. . ..++++++++|..+. +..
T Consensus 216 ~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~---------~-~~~rI~fv~GDa~dl-pf~~~l~~ 284 (419)
T 3sso_A 216 QQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH---------V-DELRIRTIQGDQNDA-EFLDRIAR 284 (419)
T ss_dssp SCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG---------G-CBTTEEEEECCTTCH-HHHHHHHH
T ss_pred CCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh---------h-cCCCcEEEEeccccc-chhhhhhc
Confidence 35799999999 7888888887655789999999999872 1 235699999998763 111
Q ss_pred -CCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 264 -EGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 264 -~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
.++||+|++|= . .+ ...+...++++.++|||||+
T Consensus 285 ~d~sFDlVisdg--------s-------H~------------~~d~~~aL~el~rvLKPGGv 319 (419)
T 3sso_A 285 RYGPFDIVIDDG--------S-------HI------------NAHVRTSFAALFPHVRPGGL 319 (419)
T ss_dssp HHCCEEEEEECS--------C-------CC------------HHHHHHHHHHHGGGEEEEEE
T ss_pred ccCCccEEEECC--------c-------cc------------chhHHHHHHHHHHhcCCCeE
Confidence 36899999951 0 11 23345788999999999995
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=2.2e-09 Score=102.47 Aligned_cols=93 Identities=20% Similarity=0.144 Sum_probs=72.4
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNP 274 (324)
...+|||+|||+|.++..+++.+ ++.+++++|+ +.+++.|+++ .+++++.+|++++++ .||+|+++-
T Consensus 209 ~~~~vLDvG~G~G~~~~~l~~~~-~~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~~~~----~~D~v~~~~ 275 (372)
T 1fp1_D 209 GISTLVDVGGGSGRNLELIISKY-PLIKGINFDL-PQVIENAPPL-------SGIEHVGGDMFASVP----QGDAMILKA 275 (372)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHTTCCCC-------TTEEEEECCTTTCCC----CEEEEEEES
T ss_pred CCCEEEEeCCCCcHHHHHHHHHC-CCCeEEEeCh-HHHHHhhhhc-------CCCEEEeCCcccCCC----CCCEEEEec
Confidence 45799999999999999999986 7889999999 9999887752 359999999987432 399999952
Q ss_pred CCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 275 PYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
+.+|-+. .....+++++.+.|||||+
T Consensus 276 --------------~lh~~~d----------~~~~~~l~~~~~~L~pgG~ 301 (372)
T 1fp1_D 276 --------------VCHNWSD----------EKCIEFLSNCHKALSPNGK 301 (372)
T ss_dssp --------------SGGGSCH----------HHHHHHHHHHHHHEEEEEE
T ss_pred --------------ccccCCH----------HHHHHHHHHHHHhcCCCCE
Confidence 2222121 1234789999999999984
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=98.84 E-value=5.7e-10 Score=100.30 Aligned_cols=93 Identities=13% Similarity=0.130 Sum_probs=62.2
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEc-cccccc-ccCCC-CeeEEE
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQG-SWFGKL-KDVEG-KLSGVV 271 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~g-D~~~~l-~~~~~-~fDlIV 271 (324)
.+.+|||+|||+|.++..+++. ...+|+|+|+|+.|++.|++|..+ +..... ++.... ..... .||.+.
T Consensus 37 ~g~~VLDiGcGtG~~t~~la~~--g~~~V~gvDis~~ml~~a~~~~~~------~~~~~~~~~~~~~~~~~~~~~~d~~~ 108 (232)
T 3opn_A 37 NGKTCLDIGSSTGGFTDVMLQN--GAKLVYALDVGTNQLAWKIRSDER------VVVMEQFNFRNAVLADFEQGRPSFTS 108 (232)
T ss_dssp TTCEEEEETCTTSHHHHHHHHT--TCSEEEEECSSCCCCCHHHHTCTT------EEEECSCCGGGCCGGGCCSCCCSEEE
T ss_pred CCCEEEEEccCCCHHHHHHHhc--CCCEEEEEcCCHHHHHHHHHhCcc------ccccccceEEEeCHhHcCcCCCCEEE
Confidence 4669999999999999999986 335999999999999998876432 222111 111000 11111 356666
Q ss_pred EcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 272 SNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 272 sNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
++..|+.. ..++.++.++|||||+
T Consensus 109 ~D~v~~~l-----------------------------~~~l~~i~rvLkpgG~ 132 (232)
T 3opn_A 109 IDVSFISL-----------------------------DLILPPLYEILEKNGE 132 (232)
T ss_dssp ECCSSSCG-----------------------------GGTHHHHHHHSCTTCE
T ss_pred EEEEhhhH-----------------------------HHHHHHHHHhccCCCE
Confidence 66555421 2478899999999994
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=1.1e-08 Score=92.37 Aligned_cols=72 Identities=10% Similarity=-0.064 Sum_probs=62.5
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEc
Q 020573 194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN 273 (324)
Q Consensus 194 ~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsN 273 (324)
..+.+|||+|||+|-+++.+. +..+++|+|+|+.+++.++.|+..++. +..+..+|...... .++||+|+++
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~----~~~~y~a~DId~~~i~~ar~~~~~~g~--~~~~~v~D~~~~~~--~~~~DvvLll 175 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYER----GIASVWGCDIHQGLGDVITPFAREKDW--DFTFALQDVLCAPP--AEAGDLALIF 175 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHT----TCSEEEEEESBHHHHHHHHHHHHHTTC--EEEEEECCTTTSCC--CCBCSEEEEE
T ss_pred CCCCeEEEecCCccHHHHHhc----cCCeEEEEeCCHHHHHHHHHHHHhcCC--CceEEEeecccCCC--CCCcchHHHH
Confidence 356799999999999999887 568999999999999999999999884 48999999886543 3699999996
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=3e-09 Score=100.76 Aligned_cols=93 Identities=16% Similarity=0.122 Sum_probs=72.3
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNP 274 (324)
...+|||+|||+|.++..+++.+ |+.+++++|+ +.+++.|+++ .+++++.+|+++.++ .||+|+++-
T Consensus 188 ~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~~~p----~~D~v~~~~ 254 (352)
T 1fp2_A 188 GLESIVDVGGGTGTTAKIICETF-PKLKCIVFDR-PQVVENLSGS-------NNLTYVGGDMFTSIP----NADAVLLKY 254 (352)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHTTCCCB-------TTEEEEECCTTTCCC----CCSEEEEES
T ss_pred cCceEEEeCCCccHHHHHHHHHC-CCCeEEEeeC-HHHHhhcccC-------CCcEEEeccccCCCC----CccEEEeeh
Confidence 35699999999999999999986 7889999999 9999887752 249999999987432 499999952
Q ss_pred CCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCC---CCC
Q 020573 275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKP---DKW 324 (324)
Q Consensus 275 PYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~Lkp---gG~ 324 (324)
+.+|-+. .....+++++.+.||| ||+
T Consensus 255 --------------~lh~~~d----------~~~~~~l~~~~~~L~p~~~gG~ 283 (352)
T 1fp2_A 255 --------------ILHNWTD----------KDCLRILKKCKEAVTNDGKRGK 283 (352)
T ss_dssp --------------CGGGSCH----------HHHHHHHHHHHHHHSGGGCCCE
T ss_pred --------------hhccCCH----------HHHHHHHHHHHHhCCCCCCCcE
Confidence 2222111 1234789999999999 984
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=7.9e-09 Score=95.21 Aligned_cols=104 Identities=11% Similarity=0.109 Sum_probs=71.2
Q ss_pred CeEEEEcCCc--cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccc---ccC--CCCee-
Q 020573 197 GFWVDLGTGS--GAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKL---KDV--EGKLS- 268 (324)
Q Consensus 197 ~~VLDLGcGs--G~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l---~~~--~~~fD- 268 (324)
.+|||||||+ +.....++++..|+++|+++|+|+.|++.|+.++...+ ..+++++++|+.+.- ... .+.||
T Consensus 80 ~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~-~~~~~~v~aD~~~~~~~l~~~~~~~~~D~ 158 (277)
T 3giw_A 80 RQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTP-EGRTAYVEADMLDPASILDAPELRDTLDL 158 (277)
T ss_dssp CEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCS-SSEEEEEECCTTCHHHHHTCHHHHTTCCT
T ss_pred CEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCC-CCcEEEEEecccChhhhhcccccccccCc
Confidence 5899999997 43445555544588999999999999999999876443 246999999998741 100 13455
Q ss_pred ----EEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 269 ----GVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 269 ----lIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
.|++| .+.+|-|... ....+++...+.|+|||+
T Consensus 159 ~~p~av~~~--------------avLH~l~d~~---------~p~~~l~~l~~~L~PGG~ 195 (277)
T 3giw_A 159 TRPVALTVI--------------AIVHFVLDED---------DAVGIVRRLLEPLPSGSY 195 (277)
T ss_dssp TSCCEEEEE--------------SCGGGSCGGG---------CHHHHHHHHHTTSCTTCE
T ss_pred CCcchHHhh--------------hhHhcCCchh---------hHHHHHHHHHHhCCCCcE
Confidence 46675 2234433211 123578888999999995
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.81 E-value=6.9e-09 Score=96.44 Aligned_cols=93 Identities=18% Similarity=0.117 Sum_probs=64.2
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEE-Eccccccc-ccC-CCCeeEEE
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIR-QGSWFGKL-KDV-EGKLSGVV 271 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~-~gD~~~~l-~~~-~~~fDlIV 271 (324)
.+.+|||+|||||.++..+++. +..+|+|+|+|+.|++.+.++- .++... ..|+.... ..+ ...||+|+
T Consensus 85 ~g~~vLDiGcGTG~~t~~L~~~--ga~~V~aVDvs~~mL~~a~r~~------~rv~~~~~~ni~~l~~~~l~~~~fD~v~ 156 (291)
T 3hp7_A 85 EDMITIDIGASTGGFTDVMLQN--GAKLVYAVDVGTNQLVWKLRQD------DRVRSMEQYNFRYAEPVDFTEGLPSFAS 156 (291)
T ss_dssp TTCEEEEETCTTSHHHHHHHHT--TCSEEEEECSSSSCSCHHHHTC------TTEEEECSCCGGGCCGGGCTTCCCSEEE
T ss_pred cccEEEecCCCccHHHHHHHhC--CCCEEEEEECCHHHHHHHHHhC------cccceecccCceecchhhCCCCCCCEEE
Confidence 4679999999999999999886 4579999999999999865431 234333 23332110 111 23499999
Q ss_pred EcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 272 SNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 272 sNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
+|--|+. + ..++.++.++|||||.
T Consensus 157 ~d~sf~s------l-----------------------~~vL~e~~rvLkpGG~ 180 (291)
T 3hp7_A 157 IDVSFIS------L-----------------------NLILPALAKILVDGGQ 180 (291)
T ss_dssp ECCSSSC------G-----------------------GGTHHHHHHHSCTTCE
T ss_pred EEeeHhh------H-----------------------HHHHHHHHHHcCcCCE
Confidence 9755441 1 2468888999999994
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=7.6e-10 Score=102.16 Aligned_cols=99 Identities=12% Similarity=0.009 Sum_probs=65.9
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH-HcCCCCcEEEE--EcccccccccCCCCeeEEE
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ-RYGLQDIIEIR--QGSWFGKLKDVEGKLSGVV 271 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~-~~gl~~rv~~~--~gD~~~~l~~~~~~fDlIV 271 (324)
++.+|||+|||+|.++..+++. ++|+|+|+++ ++..|+++.. ......++.++ ++|+.+ ++ .++||+|+
T Consensus 82 ~g~~VLDlGcGtG~~s~~la~~----~~V~gVD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~-l~--~~~fD~Vv 153 (276)
T 2wa2_A 82 LKGTVVDLGCGRGSWSYYAASQ----PNVREVKAYT-LGTSGHEKPRLVETFGWNLITFKSKVDVTK-ME--PFQADTVL 153 (276)
T ss_dssp CCEEEEEESCTTCHHHHHHHTS----TTEEEEEEEC-CCCTTSCCCCCCCCTTGGGEEEECSCCGGG-CC--CCCCSEEE
T ss_pred CCCEEEEeccCCCHHHHHHHHc----CCEEEEECch-hhhhhhhchhhhhhcCCCeEEEeccCcHhh-CC--CCCcCEEE
Confidence 4679999999999999999885 5899999998 5333322110 00111158999 999876 33 36899999
Q ss_pred EcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHH--HHHHHHhcccCCCC
Q 020573 272 SNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLL--HLCNGTASMLKPDK 323 (324)
Q Consensus 272 sNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~--~il~~a~~~LkpgG 323 (324)
||...+... .. ++..+ .+++.+.++|||||
T Consensus 154 sd~~~~~~~------~~----------------~d~~~~l~~L~~~~r~LkpGG 185 (276)
T 2wa2_A 154 CDIGESNPT------AA----------------VEASRTLTVLNVISRWLEYNQ 185 (276)
T ss_dssp ECCCCCCSC------HH----------------HHHHHHHHHHHHHHHHHHHST
T ss_pred ECCCcCCCc------hh----------------hhHHHHHHHHHHHHHHhccCC
Confidence 985532110 00 11111 26788889999999
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=98.72 E-value=1.3e-09 Score=100.03 Aligned_cols=99 Identities=11% Similarity=-0.034 Sum_probs=65.2
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH-HcCCCCcEEEE--EcccccccccCCCCeeEEE
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ-RYGLQDIIEIR--QGSWFGKLKDVEGKLSGVV 271 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~-~~gl~~rv~~~--~gD~~~~l~~~~~~fDlIV 271 (324)
++.+|||+|||+|.++..+++. ++|+|+|+++ ++..++++.. ......++.++ ++|+.+ ++ .++||+|+
T Consensus 74 ~g~~VLDlGcGtG~~s~~la~~----~~V~gvD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~-l~--~~~fD~V~ 145 (265)
T 2oxt_A 74 LTGRVVDLGCGRGGWSYYAASR----PHVMDVRAYT-LGVGGHEVPRITESYGWNIVKFKSRVDIHT-LP--VERTDVIM 145 (265)
T ss_dssp CCEEEEEESCTTSHHHHHHHTS----TTEEEEEEEC-CCCSSCCCCCCCCBTTGGGEEEECSCCTTT-SC--CCCCSEEE
T ss_pred CCCEEEEeCcCCCHHHHHHHHc----CcEEEEECch-hhhhhhhhhhhhhccCCCeEEEecccCHhH-CC--CCCCcEEE
Confidence 4679999999999999998875 5899999998 4322221100 00011158999 999876 33 36899999
Q ss_pred EcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHH--HHHHHHhcccCCCC
Q 020573 272 SNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLL--HLCNGTASMLKPDK 323 (324)
Q Consensus 272 sNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~--~il~~a~~~LkpgG 323 (324)
||...+... .. ++..+ .+++.+.++|||||
T Consensus 146 sd~~~~~~~------~~----------------~d~~~~l~~L~~~~r~LkpGG 177 (265)
T 2oxt_A 146 CDVGESSPK------WS----------------VESERTIKILELLEKWKVKNP 177 (265)
T ss_dssp ECCCCCCSC------HH----------------HHHHHHHHHHHHHHHHHHHCT
T ss_pred EeCcccCCc------cc----------------hhHHHHHHHHHHHHHHhccCC
Confidence 985522110 00 11111 26788899999999
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.71 E-value=4.9e-09 Score=91.62 Aligned_cols=80 Identities=15% Similarity=0.135 Sum_probs=60.2
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNP 274 (324)
++.+|||+|||+|.++..++ .+|+|+|+|+. ++++.++|+.+ ++...++||+|+++.
T Consensus 67 ~~~~vLDiG~G~G~~~~~l~------~~v~~~D~s~~----------------~~~~~~~d~~~-~~~~~~~fD~v~~~~ 123 (215)
T 2zfu_A 67 ASLVVADFGCGDCRLASSIR------NPVHCFDLASL----------------DPRVTVCDMAQ-VPLEDESVDVAVFCL 123 (215)
T ss_dssp TTSCEEEETCTTCHHHHHCC------SCEEEEESSCS----------------STTEEESCTTS-CSCCTTCEEEEEEES
T ss_pred CCCeEEEECCcCCHHHHHhh------ccEEEEeCCCC----------------CceEEEecccc-CCCCCCCEeEEEEeh
Confidence 45689999999999988762 58999999986 36788999876 332346899999975
Q ss_pred CCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 275 PYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
.+. + + ....+++++.++|+|||+
T Consensus 124 ~l~--------------~-~------------~~~~~l~~~~~~L~~gG~ 146 (215)
T 2zfu_A 124 SLM--------------G-T------------NIRDFLEEANRVLKPGGL 146 (215)
T ss_dssp CCC--------------S-S------------CHHHHHHHHHHHEEEEEE
T ss_pred hcc--------------c-c------------CHHHHHHHHHHhCCCCeE
Confidence 442 1 0 123678888999999984
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=98.71 E-value=1.2e-07 Score=83.46 Aligned_cols=59 Identities=10% Similarity=0.008 Sum_probs=51.9
Q ss_pred CCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCC--CCcEEEEEccccc
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGL--QDIIEIRQGSWFG 258 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl--~~rv~~~~gD~~~ 258 (324)
.++|||+|| |+-++.+|+. ++++|+++|.+++..+.|++|++++|+ .++|+++.+|..+
T Consensus 31 a~~VLEiGt--GySTl~lA~~--~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~ 91 (202)
T 3cvo_A 31 AEVILEYGS--GGSTVVAAEL--PGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGP 91 (202)
T ss_dssp CSEEEEESC--SHHHHHHHTS--TTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSS
T ss_pred CCEEEEECc--hHHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchh
Confidence 458999998 5788888874 478999999999999999999999998 8899999999754
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=98.71 E-value=2.4e-08 Score=102.07 Aligned_cols=104 Identities=18% Similarity=0.133 Sum_probs=71.1
Q ss_pred CCeEEEEcCCccHHHHH---HHHHhC---------CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc--
Q 020573 196 DGFWVDLGTGSGAIAIG---IARVLG---------SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK-- 261 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~---la~~~~---------p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~-- 261 (324)
.+.|+|+|||+|.+... .++..+ ...+|+|||.|+.|+..++.... +++.++|+++++|..+.-.
T Consensus 410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~-Ng~~d~VtVI~gd~eev~lp~ 488 (745)
T 3ua3_A 410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV-RTWKRRVTIIESDMRSLPGIA 488 (745)
T ss_dssp EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH-HTTTTCSEEEESCGGGHHHHH
T ss_pred CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh-cCCCCeEEEEeCchhhccccc
Confidence 45799999999999643 333221 23599999999988866665544 8999999999999987422
Q ss_pred --cCCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 262 --DVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 262 --~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
...+++|+|||-. ......+ +....++..+.++|||||+
T Consensus 489 ~~~~~ekVDIIVSEl-----------mGsfl~n-------------EL~pe~Ld~v~r~Lkp~Gi 529 (745)
T 3ua3_A 489 KDRGFEQPDIIVSEL-----------LGSFGDN-------------ELSPECLDGVTGFLKPTTI 529 (745)
T ss_dssp HHTTCCCCSEEEECC-----------CBTTBGG-------------GSHHHHHHTTGGGSCTTCE
T ss_pred ccCCCCcccEEEEec-----------cccccch-------------hccHHHHHHHHHhCCCCcE
Confidence 0136999999921 1111111 1223466677799999995
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.70 E-value=1.1e-07 Score=88.37 Aligned_cols=107 Identities=14% Similarity=0.116 Sum_probs=82.8
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHc--C--CCCcEEEEEcccccccccCCCCeeEE
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRY--G--LQDIIEIRQGSWFGKLKDVEGKLSGV 270 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~--g--l~~rv~~~~gD~~~~l~~~~~~fDlI 270 (324)
.+++||=+|-|.|..+..+++.. +..+|+.||+++..+++|++.+... + -..|++++.+|.++.+....++||+|
T Consensus 83 ~pk~VLIiGgGdG~~~revlk~~-~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDvI 161 (294)
T 3o4f_A 83 HAKHVLIIGGGDGAMLREVTRHK-NVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVI 161 (294)
T ss_dssp CCCEEEEESCTTSHHHHHHHTCT-TCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEEE
T ss_pred CCCeEEEECCCchHHHHHHHHcC-CcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCEE
Confidence 46799999999999999999873 6679999999999999999986432 1 14589999999999887767899999
Q ss_pred EEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 271 VSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 271 VsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
|.+.+-- .. +++ .|+ -+.+++.+.+.|+|||+
T Consensus 162 i~D~~dp-~~-----~~~--------~L~--------t~eFy~~~~~~L~p~Gv 193 (294)
T 3o4f_A 162 ISDCTDP-IG-----PGE--------SLF--------TSAFYEGCKRCLNPGGI 193 (294)
T ss_dssp EESCCCC-CC-----TTC--------CSS--------CCHHHHHHHHTEEEEEE
T ss_pred EEeCCCc-CC-----Cch--------hhc--------CHHHHHHHHHHhCCCCE
Confidence 9986421 10 000 111 12678888999999995
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=2.2e-08 Score=94.99 Aligned_cols=92 Identities=14% Similarity=0.140 Sum_probs=71.2
Q ss_pred CCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcCC
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPP 275 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNPP 275 (324)
..+|||+|||+|.++..+++.+ |+.+++++|+ +.+++.|++ .. +++++.+|++++++ .||+|+++-.
T Consensus 194 ~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~-~v~~~~~d~~~~~~----~~D~v~~~~v 260 (358)
T 1zg3_A 194 LESLVDVGGGTGGVTKLIHEIF-PHLKCTVFDQ-PQVVGNLTG------NE-NLNFVGGDMFKSIP----SADAVLLKWV 260 (358)
T ss_dssp CSEEEEETCTTSHHHHHHHHHC-TTSEEEEEEC-HHHHSSCCC------CS-SEEEEECCTTTCCC----CCSEEEEESC
T ss_pred CCEEEEECCCcCHHHHHHHHHC-CCCeEEEecc-HHHHhhccc------CC-CcEEEeCccCCCCC----CceEEEEccc
Confidence 4699999999999999999986 7889999999 788877764 23 49999999987432 5999999632
Q ss_pred CCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCC---CCC
Q 020573 276 YIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKP---DKW 324 (324)
Q Consensus 276 Yi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~Lkp---gG~ 324 (324)
+ +|-+. .....+++++.+.||| ||+
T Consensus 261 l--------------h~~~d----------~~~~~~l~~~~~~L~p~~~gG~ 288 (358)
T 1zg3_A 261 L--------------HDWND----------EQSLKILKNSKEAISHKGKDGK 288 (358)
T ss_dssp G--------------GGSCH----------HHHHHHHHHHHHHTGGGGGGCE
T ss_pred c--------------cCCCH----------HHHHHHHHHHHHhCCCCCCCcE
Confidence 2 22111 1234789999999999 984
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=98.62 E-value=3.6e-08 Score=82.12 Aligned_cols=64 Identities=16% Similarity=0.160 Sum_probs=53.5
Q ss_pred CCCeEEEEcCCcc-HHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEE-EE
Q 020573 195 RDGFWVDLGTGSG-AIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGV-VS 272 (324)
Q Consensus 195 ~~~~VLDLGcGsG-~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlI-Vs 272 (324)
.+.+|||+|||+| ..|..|++.. +..|+++|+++.+++ +++.|+|++.....+.||+| -.
T Consensus 35 ~~~rVlEVG~G~g~~vA~~La~~~--g~~V~atDInp~Av~----------------~v~dDiF~P~~~~Y~~~DLIYsi 96 (153)
T 2k4m_A 35 PGTRVVEVGAGRFLYVSDYIRKHS--KVDLVLTDIKPSHGG----------------IVRDDITSPRMEIYRGAALIYSI 96 (153)
T ss_dssp SSSEEEEETCTTCCHHHHHHHHHS--CCEEEEECSSCSSTT----------------EECCCSSSCCHHHHTTEEEEEEE
T ss_pred CCCcEEEEccCCChHHHHHHHHhC--CCeEEEEECCccccc----------------eEEccCCCCcccccCCcCEEEEc
Confidence 3569999999999 6999999853 578999999998876 88999998765433589999 88
Q ss_pred cCCC
Q 020573 273 NPPY 276 (324)
Q Consensus 273 NPPY 276 (324)
|||-
T Consensus 97 rPP~ 100 (153)
T 2k4m_A 97 RPPA 100 (153)
T ss_dssp SCCT
T ss_pred CCCH
Confidence 9994
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=5.8e-09 Score=97.51 Aligned_cols=100 Identities=18% Similarity=0.207 Sum_probs=65.5
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeC----CHHHHHHHHHHHHHcCCCCcEEEEEc-ccccccccCCCCeeE
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDL----NPLAAAVAAFNAQRYGLQDIIEIRQG-SWFGKLKDVEGKLSG 269 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDi----s~~al~~Ar~N~~~~gl~~rv~~~~g-D~~~~l~~~~~~fDl 269 (324)
++.+|||+|||+|.++..+++. ++|+|+|+ ++.+++.++ ++..+. +++.++++ |+.+. + .++||+
T Consensus 82 ~g~~VLDlGcG~G~~s~~la~~----~~V~gvD~~~~~~~~~~~~~~--~~~~~~-~~v~~~~~~D~~~l-~--~~~fD~ 151 (305)
T 2p41_A 82 PEGKVVDLGCGRGGWSYYCGGL----KNVREVKGLTKGGPGHEEPIP--MSTYGW-NLVRLQSGVDVFFI-P--PERCDT 151 (305)
T ss_dssp CCEEEEEETCTTSHHHHHHHTS----TTEEEEEEECCCSTTSCCCCC--CCSTTG-GGEEEECSCCTTTS-C--CCCCSE
T ss_pred CCCEEEEEcCCCCHHHHHHHhc----CCEEEEeccccCchhHHHHHH--hhhcCC-CCeEEEeccccccC-C--cCCCCE
Confidence 4579999999999999999885 47999999 554332111 111121 45999999 88763 2 358999
Q ss_pred EEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 270 VVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 270 IVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
|+||-+.. ... ... .+ ...+ .++..+.++|||||+
T Consensus 152 V~sd~~~~-~g~-----~~~-d~------------~~~l-~~L~~~~~~LkpGG~ 186 (305)
T 2p41_A 152 LLCDIGES-SPN-----PTV-EA------------GRTL-RVLNLVENWLSNNTQ 186 (305)
T ss_dssp EEECCCCC-CSS-----HHH-HH------------HHHH-HHHHHHHHHCCTTCE
T ss_pred EEECCccc-cCc-----chh-hH------------HHHH-HHHHHHHHHhCCCCE
Confidence 99986553 111 000 00 0011 467888899999994
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=98.51 E-value=2.2e-07 Score=85.51 Aligned_cols=88 Identities=23% Similarity=0.283 Sum_probs=69.5
Q ss_pred HHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccc
Q 020573 179 MVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFG 258 (324)
Q Consensus 179 lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~ 258 (324)
|.+.+++.+ ...+++.++|.+||.|..+..+++. +++|+|+|.++.|++.|++ ++. ++++++++|+.+
T Consensus 10 Ll~e~le~L----~~~~gg~~VD~T~G~GGHS~~il~~---~g~VigiD~Dp~Ai~~A~~-L~~----~rv~lv~~~f~~ 77 (285)
T 1wg8_A 10 LYQEALDLL----AVRPGGVYVDATLGGAGHARGILER---GGRVIGLDQDPEAVARAKG-LHL----PGLTVVQGNFRH 77 (285)
T ss_dssp THHHHHHHH----TCCTTCEEEETTCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHH-TCC----TTEEEEESCGGG
T ss_pred HHHHHHHhh----CCCCCCEEEEeCCCCcHHHHHHHHC---CCEEEEEeCCHHHHHHHHh-hcc----CCEEEEECCcch
Confidence 555666665 2335679999999999999999996 5799999999999999998 533 579999999976
Q ss_pred c---cccC-CCCeeEEEEcCCCCC
Q 020573 259 K---LKDV-EGKLSGVVSNPPYIP 278 (324)
Q Consensus 259 ~---l~~~-~~~fDlIVsNPPYi~ 278 (324)
. +... .+++|.|++|++|..
T Consensus 78 l~~~L~~~g~~~vDgIL~DLGvSS 101 (285)
T 1wg8_A 78 LKRHLAALGVERVDGILADLGVSS 101 (285)
T ss_dssp HHHHHHHTTCSCEEEEEEECSCCH
T ss_pred HHHHHHHcCCCCcCEEEeCCcccc
Confidence 4 2211 247999999999864
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=98.42 E-value=8.8e-07 Score=81.84 Aligned_cols=102 Identities=14% Similarity=0.129 Sum_probs=78.5
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhC----CCcEEEEEeCCH--------------------------HHHHHHHHHHHHcC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLG----SKGSIIAVDLNP--------------------------LAAAVAAFNAQRYG 244 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~----p~~~V~gvDis~--------------------------~al~~Ar~N~~~~g 244 (324)
.++.||++||..|..++.++..+. ++.+|+++|..+ ..++.+++|+++.|
T Consensus 106 ~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~g 185 (282)
T 2wk1_A 106 VPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNYD 185 (282)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHTT
T ss_pred CCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHcC
Confidence 366999999999999999987652 368999999642 14778999999999
Q ss_pred CC-CcEEEEEcccccccccC-CCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCC
Q 020573 245 LQ-DIIEIRQGSWFGKLKDV-EGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPD 322 (324)
Q Consensus 245 l~-~rv~~~~gD~~~~l~~~-~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~Lkpg 322 (324)
+. ++|+++.||+.+.++.. .++||+|..+- + . .+.+...++.+...|+||
T Consensus 186 l~~~~I~li~Gda~etL~~~~~~~~d~vfIDa------D---------~-------------y~~~~~~Le~~~p~L~pG 237 (282)
T 2wk1_A 186 LLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDG------D---------L-------------YESTWDTLTNLYPKVSVG 237 (282)
T ss_dssp CCSTTEEEEESCHHHHSTTCCCCCEEEEEECC------C---------S-------------HHHHHHHHHHHGGGEEEE
T ss_pred CCcCceEEEEeCHHHHHhhCCCCCEEEEEEcC------C---------c-------------cccHHHHHHHHHhhcCCC
Confidence 94 88999999998877654 36899999840 0 1 123345777888889998
Q ss_pred CC
Q 020573 323 KW 324 (324)
Q Consensus 323 G~ 324 (324)
|+
T Consensus 238 Gi 239 (282)
T 2wk1_A 238 GY 239 (282)
T ss_dssp EE
T ss_pred EE
Confidence 85
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.38 E-value=4.2e-07 Score=82.87 Aligned_cols=106 Identities=14% Similarity=0.171 Sum_probs=73.1
Q ss_pred CCeEEEEcCCccHHHHHHHHHh------CCC-----cEEEEEeCCH---HHHH-----------HHHHHHHHc-------
Q 020573 196 DGFWVDLGTGSGAIAIGIARVL------GSK-----GSIIAVDLNP---LAAA-----------VAAFNAQRY------- 243 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~------~p~-----~~V~gvDis~---~al~-----------~Ar~N~~~~------- 243 (324)
..+|||+|+|+|..++.+++.+ .|+ .+++++|..+ +.+. .|+++++..
T Consensus 61 ~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g~ 140 (257)
T 2qy6_A 61 LFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPGC 140 (257)
T ss_dssp EEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSEE
T ss_pred CCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccch
Confidence 4589999999999999987764 453 5899999876 4433 677776651
Q ss_pred ---CCC---CcEEEEEcccccccccCCC----CeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHH
Q 020573 244 ---GLQ---DIIEIRQGSWFGKLKDVEG----KLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCN 313 (324)
Q Consensus 244 ---gl~---~rv~~~~gD~~~~l~~~~~----~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~ 313 (324)
.+. .+++++.||+.+.++...+ .||+|+.++ |.+... ++ .|. ..+++
T Consensus 141 ~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~-fsp~~~-----p~--lw~---------------~~~l~ 197 (257)
T 2qy6_A 141 HRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDG-FAPAKN-----PD--MWT---------------QNLFN 197 (257)
T ss_dssp EEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECS-SCTTTC-----GG--GCC---------------HHHHH
T ss_pred hheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECC-CCcccC-----hh--hcC---------------HHHHH
Confidence 121 3588999999887665433 799999985 332221 11 111 15778
Q ss_pred HHhcccCCCCC
Q 020573 314 GTASMLKPDKW 324 (324)
Q Consensus 314 ~a~~~LkpgG~ 324 (324)
.+.+.|+|||+
T Consensus 198 ~l~~~L~pGG~ 208 (257)
T 2qy6_A 198 AMARLARPGGT 208 (257)
T ss_dssp HHHHHEEEEEE
T ss_pred HHHHHcCCCcE
Confidence 88899999884
|
| >2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59 | Back alignment and structure |
|---|
Probab=98.25 E-value=1.5e-07 Score=86.78 Aligned_cols=78 Identities=15% Similarity=0.099 Sum_probs=65.2
Q ss_pred CCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc---cCCCCeeEEEE
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---DVEGKLSGVVS 272 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~---~~~~~fDlIVs 272 (324)
+..+||+.+|||.+++.+.+. ..+++.+|.++.+++..++|++. .++++++++|.++.+. ....+||+|+.
T Consensus 92 ~~~~LDlfaGSGaLgiEaLS~---~d~~vfvE~~~~a~~~L~~Nl~~---~~~~~V~~~D~~~~L~~l~~~~~~fdLVfi 165 (283)
T 2oo3_A 92 LNSTLSYYPGSPYFAINQLRS---QDRLYLCELHPTEYNFLLKLPHF---NKKVYVNHTDGVSKLNALLPPPEKRGLIFI 165 (283)
T ss_dssp SSSSCCEEECHHHHHHHHSCT---TSEEEEECCSHHHHHHHTTSCCT---TSCEEEECSCHHHHHHHHCSCTTSCEEEEE
T ss_pred CCCceeEeCCcHHHHHHHcCC---CCeEEEEeCCHHHHHHHHHHhCc---CCcEEEEeCcHHHHHHHhcCCCCCccEEEE
Confidence 456899999999999998773 37999999999999999999875 3579999999877554 22347999999
Q ss_pred cCCCCCC
Q 020573 273 NPPYIPS 279 (324)
Q Consensus 273 NPPYi~~ 279 (324)
+|||-..
T Consensus 166 DPPYe~k 172 (283)
T 2oo3_A 166 DPSYERK 172 (283)
T ss_dssp CCCCCST
T ss_pred CCCCCCC
Confidence 9999743
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=98.24 E-value=6.4e-06 Score=78.85 Aligned_cols=157 Identities=14% Similarity=0.159 Sum_probs=96.5
Q ss_pred CCCceeEEe-cccccCeeeeeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEE
Q 020573 146 RKPFQYLVG-CEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSII 224 (324)
Q Consensus 146 ~~pl~yi~g-~~~f~~l~~~v~~~vliPrp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~ 224 (324)
.-|.|.|.- +..-+|..+.++..+-+-..+ +.+.+.+.... . ...++++||=+|-|.|..+..+.+. +..+|+
T Consensus 159 ~S~yQ~I~V~es~~~Gr~L~LDG~~Q~te~D-~~Y~e~l~h~~-l--~~~~pkrVLIIGgGdG~~~revlkh--~~~~V~ 232 (381)
T 3c6k_A 159 DSPYQNIKILHSKQFGNILILSGDVNLAESD-LAYTRAIMGSG-K--EDYTGKDVLILGGGDGGILCEIVKL--KPKMVT 232 (381)
T ss_dssp ECSSCEEEEEEETTTEEEEEETTEEEEETTC-HHHHHHHTTTT-C--CCCTTCEEEEEECTTCHHHHHHHTT--CCSEEE
T ss_pred CCCCceEEEEEcCCcceEEEECCceeeeCCh-HHHHHHHHHHH-h--hcCCCCeEEEECCCcHHHHHHHHhc--CCceeE
Confidence 456666532 222234445554433222223 34444443222 1 1224579999999999999999986 347999
Q ss_pred EEeCCHHHHHHHHHHHHHc---CC----CCcEEEEEccccccccc---CCCCeeEEEEcCCCCCCCCcccchhhhhcccc
Q 020573 225 AVDLNPLAAAVAAFNAQRY---GL----QDIIEIRQGSWFGKLKD---VEGKLSGVVSNPPYIPSDDISGLQVEVGKHEP 294 (324)
Q Consensus 225 gvDis~~al~~Ar~N~~~~---gl----~~rv~~~~gD~~~~l~~---~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP 294 (324)
.||++++.+++|++..... .+ .++++++.+|..+.+.. ..++||+||.+.+=.+.... |
T Consensus 233 ~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~~yDvIIvDl~D~~~s~~-----------p 301 (381)
T 3c6k_A 233 MVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGREFDYVINDLTAVPISTS-----------P 301 (381)
T ss_dssp EEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTCCEEEEEEECCSSCCCCC------------
T ss_pred EEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccCceeEEEECCCCCcccCc-----------c
Confidence 9999999999999874211 11 24689999999876642 23589999998542111100 0
Q ss_pred cccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 295 RLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 295 ~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
. |..--.+.+.+++.+.+.|+|||+
T Consensus 302 ~-----g~a~~Lft~eFy~~~~~~L~p~GV 326 (381)
T 3c6k_A 302 E-----EDSTWEFLRLILDLSMKVLKQDGK 326 (381)
T ss_dssp --------CHHHHHHHHHHHHHHTEEEEEE
T ss_pred c-----CcchHHHHHHHHHHHHHhcCCCCE
Confidence 0 000123457889999999999995
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=98.23 E-value=2.3e-07 Score=78.48 Aligned_cols=83 Identities=11% Similarity=-0.046 Sum_probs=60.4
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc--cCCCCeeEEE
Q 020573 194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK--DVEGKLSGVV 271 (324)
Q Consensus 194 ~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~--~~~~~fDlIV 271 (324)
.++.+|||+|||. +++|+|+.|++.|+++.. .+++++++|+.+... ...++||+|+
T Consensus 11 ~~g~~vL~~~~g~-----------------v~vD~s~~ml~~a~~~~~-----~~~~~~~~d~~~~~~~~~~~~~fD~V~ 68 (176)
T 2ld4_A 11 SAGQFVAVVWDKS-----------------SPVEALKGLVDKLQALTG-----NEGRVSVENIKQLLQSAHKESSFDIIL 68 (176)
T ss_dssp CTTSEEEEEECTT-----------------SCHHHHHHHHHHHHHHTT-----TTSEEEEEEGGGGGGGCCCSSCEEEEE
T ss_pred CCCCEEEEecCCc-----------------eeeeCCHHHHHHHHHhcc-----cCcEEEEechhcCccccCCCCCEeEEE
Confidence 3577999999996 238999999999998753 238999999876422 0357899999
Q ss_pred EcCCCCCCCCcccchhhhhccc-ccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 272 SNPPYIPSDDISGLQVEVGKHE-PRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 272 sNPPYi~~~~~~~l~~ev~~~e-P~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
++--. .|- +. ...+++++.++|||||+
T Consensus 69 ~~~~l--------------~~~~~~------------~~~~l~~~~r~LkpgG~ 96 (176)
T 2ld4_A 69 SGLVP--------------GSTTLH------------SAEILAEIARILRPGGC 96 (176)
T ss_dssp ECCST--------------TCCCCC------------CHHHHHHHHHHEEEEEE
T ss_pred ECChh--------------hhcccC------------HHHHHHHHHHHCCCCEE
Confidence 96221 221 11 13688999999999994
|
| >3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.18 E-value=1.7e-06 Score=81.49 Aligned_cols=91 Identities=25% Similarity=0.355 Sum_probs=71.4
Q ss_pred HHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccc
Q 020573 179 MVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFG 258 (324)
Q Consensus 179 lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~ 258 (324)
|++.+++.+ ...+++.++|..||.|..+..+++.++++++|+|+|.+++|++.|+ ++ ..++++++++++.+
T Consensus 45 Ll~Evl~~L----~i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL----~~~Rv~lv~~nF~~ 115 (347)
T 3tka_A 45 LLDEAVNGL----NIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TI----DDPRFSIIHGPFSA 115 (347)
T ss_dssp TTHHHHHHT----CCCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TC----CCTTEEEEESCGGG
T ss_pred cHHHHHHhh----CCCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hh----cCCcEEEEeCCHHH
Confidence 555666665 3345789999999999999999998878899999999999999984 33 24689999999876
Q ss_pred ccc---c--CCCCeeEEEEcCCCCC
Q 020573 259 KLK---D--VEGKLSGVVSNPPYIP 278 (324)
Q Consensus 259 ~l~---~--~~~~fDlIVsNPPYi~ 278 (324)
... . ..+++|.|+.|..|..
T Consensus 116 l~~~L~~~g~~~~vDgILfDLGVSS 140 (347)
T 3tka_A 116 LGEYVAERDLIGKIDGILLDLGVSS 140 (347)
T ss_dssp HHHHHHHTTCTTCEEEEEEECSCCH
T ss_pred HHHHHHhcCCCCcccEEEECCccCH
Confidence 322 1 1236999999999853
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=98.11 E-value=9.2e-06 Score=75.17 Aligned_cols=61 Identities=20% Similarity=0.170 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcC
Q 020573 176 TELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYG 244 (324)
Q Consensus 176 te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~g 244 (324)
.+.+++.++... . .++..|||+|||||.+++++++. +.+++|+|+++++++.|++|++...
T Consensus 221 p~~l~~~~i~~~-~----~~~~~vlD~f~GsGt~~~~a~~~---g~~~~g~e~~~~~~~~a~~r~~~~~ 281 (297)
T 2zig_A 221 PLELAERLVRMF-S----FVGDVVLDPFAGTGTTLIAAARW---GRRALGVELVPRYAQLAKERFAREV 281 (297)
T ss_dssp CHHHHHHHHHHH-C----CTTCEEEETTCTTTHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHh-C----CCCCEEEECCCCCCHHHHHHHHc---CCeEEEEeCCHHHHHHHHHHHHHhc
Confidence 345666666655 1 24679999999999999998875 4799999999999999999998763
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=97.91 E-value=1.8e-06 Score=79.90 Aligned_cols=71 Identities=18% Similarity=0.176 Sum_probs=48.0
Q ss_pred cEEEEEcccccccccC-CCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 248 IIEIRQGSWFGKLKDV-EGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 248 rv~~~~gD~~~~l~~~-~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
++++++||+++.+..+ .++||+||+||||....+......+. .++...+++++.++.+++++.++|||||.
T Consensus 21 ~~~i~~gD~~~~l~~l~~~s~DlIvtdPPY~~~~~y~~~~~~~------~~~~~~~~~l~~l~~~~~~~~rvLk~~G~ 92 (297)
T 2zig_A 21 VHRLHVGDAREVLASFPEASVHLVVTSPPYWTLKRYEDTPGQL------GHIEDYEAFLDELDRVWREVFRLLVPGGR 92 (297)
T ss_dssp CEEEEESCHHHHHTTSCTTCEEEEEECCCCCCCC-------CC------HHHHHHHHHHHHHHHHHHHHHHHEEEEEE
T ss_pred CCEEEECcHHHHHhhCCCCceeEEEECCCCCCccccCCChhhh------cccccHHHHHHHHHHHHHHHHHHcCCCcE
Confidence 5899999998865543 36899999999998654332211111 12222345677788999999999999984
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=97.83 E-value=3.2e-05 Score=70.13 Aligned_cols=61 Identities=18% Similarity=0.218 Sum_probs=48.0
Q ss_pred HHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCC
Q 020573 177 ELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGL 245 (324)
Q Consensus 177 e~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl 245 (324)
+.|++.+++.. . .++..|||++||||..++++.+. +.+++|+|+++.+++.|++|++.+++
T Consensus 199 ~~l~~~~i~~~-~----~~~~~vlD~f~GsGtt~~~a~~~---gr~~ig~e~~~~~~~~~~~r~~~~~~ 259 (260)
T 1g60_A 199 RDLIERIIRAS-S----NPNDLVLDCFMGSGTTAIVAKKL---GRNFIGCDMNAEYVNQANFVLNQLEI 259 (260)
T ss_dssp HHHHHHHHHHH-C----CTTCEEEESSCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHh-C----CCCCEEEECCCCCCHHHHHHHHc---CCeEEEEeCCHHHHHHHHHHHHhccC
Confidence 45666666654 1 24679999999999999998875 47999999999999999999986653
|
| >2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ... | Back alignment and structure |
|---|
Probab=97.77 E-value=7e-05 Score=70.41 Aligned_cols=77 Identities=12% Similarity=0.073 Sum_probs=59.6
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNP 274 (324)
.+.+++||+||.|.+++.+.+. .-..|+++|+++.|++..+.|.... . .+|..+........+|+|+..|
T Consensus 10 ~~~~~~dLFaG~Gg~~~g~~~a--G~~~v~~~e~d~~a~~t~~~N~~~~-----~---~~Di~~~~~~~~~~~D~l~~gp 79 (327)
T 2c7p_A 10 TGLRFIDLFAGLGGFRLALESC--GAECVYSNEWDKYAQEVYEMNFGEK-----P---EGDITQVNEKTIPDHDILCAGF 79 (327)
T ss_dssp TTCEEEEETCTTTHHHHHHHHT--TCEEEEEECCCHHHHHHHHHHHSCC-----C---BSCGGGSCGGGSCCCSEEEEEC
T ss_pred CCCcEEEECCCcCHHHHHHHHC--CCeEEEEEeCCHHHHHHHHHHcCCC-----C---cCCHHHcCHhhCCCCCEEEECC
Confidence 3568999999999999999875 3456999999999999999996321 1 5787764332224699999999
Q ss_pred CCCCCCC
Q 020573 275 PYIPSDD 281 (324)
Q Consensus 275 PYi~~~~ 281 (324)
||-+-+.
T Consensus 80 PCQ~fS~ 86 (327)
T 2c7p_A 80 PCQAFSI 86 (327)
T ss_dssp CCTTTCT
T ss_pred CCCCcch
Confidence 9987654
|
| >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00013 Score=69.40 Aligned_cols=59 Identities=8% Similarity=-0.054 Sum_probs=49.8
Q ss_pred CCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccc
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGK 259 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~ 259 (324)
+..|||+|.|.|.++..|+... ...+|+++|+++..+...++.. . .++++++++|+++.
T Consensus 59 ~~~VlEIGPG~G~LT~~Ll~~~-~~~~vvavE~D~~l~~~L~~~~-~---~~~l~ii~~D~l~~ 117 (353)
T 1i4w_A 59 ELKVLDLYPGVGIQSAIFYNKY-CPRQYSLLEKRSSLYKFLNAKF-E---GSPLQILKRDPYDW 117 (353)
T ss_dssp TCEEEEESCTTCHHHHHHHHHH-CCSEEEEECCCHHHHHHHHHHT-T---TSSCEEECSCTTCH
T ss_pred CCEEEEECCCCCHHHHHHHhhC-CCCEEEEEecCHHHHHHHHHhc-c---CCCEEEEECCccch
Confidence 4689999999999999999864 3368999999999999888765 2 35799999999763
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=97.66 E-value=2.6e-05 Score=71.41 Aligned_cols=103 Identities=14% Similarity=-0.035 Sum_probs=59.0
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNP 274 (324)
++.+|||||||.|.++..+++.. +...|+|+|+..+........ +..+. ++...++++.. .....++||+|+||-
T Consensus 74 ~~~~VLDLGaAPGGWSQvAa~~~-~~~~v~g~dVGvDl~~~pi~~-~~~g~--~ii~~~~~~dv-~~l~~~~~DlVlsD~ 148 (277)
T 3evf_A 74 LEGRVIDLGCGRGGWCYYAAAQK-EVSGVKGFTLGRDGHEKPMNV-QSLGW--NIITFKDKTDI-HRLEPVKCDTLLCDI 148 (277)
T ss_dssp CCEEEEEETCTTCHHHHHHHTST-TEEEEEEECCCCTTCCCCCCC-CBTTG--GGEEEECSCCT-TTSCCCCCSEEEECC
T ss_pred CCCEEEEecCCCCHHHHHHHHhc-CCCcceeEEEeccCccccccc-CcCCC--CeEEEecccee-hhcCCCCccEEEecC
Confidence 45689999999999999988763 445788888874321000000 00011 24445555421 111246899999972
Q ss_pred CCCCCCCcccchhhhhcccccccccCCCCcHHHHH--HHHHHHhcccCCC-CC
Q 020573 275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLL--HLCNGTASMLKPD-KW 324 (324)
Q Consensus 275 PYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~--~il~~a~~~Lkpg-G~ 324 (324)
--. + |..-.|.++ .+++.|.++|+|| |.
T Consensus 149 apn-s---------------------G~~~~D~~rs~~LL~~a~~~LkpG~G~ 179 (277)
T 3evf_A 149 GES-S---------------------SSSVTEGERTVRVLDTVEKWLACGVDN 179 (277)
T ss_dssp CCC-C---------------------SCHHHHHHHHHHHHHHHHHHHTTCCSE
T ss_pred ccC-c---------------------CchHHHHHHHHHHHHHHHHHhCCCCCe
Confidence 111 0 111122222 3478899999999 73
|
| >1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26 | Back alignment and structure |
|---|
Probab=97.65 E-value=3.7e-05 Score=72.73 Aligned_cols=77 Identities=17% Similarity=0.220 Sum_probs=56.2
Q ss_pred CeEEEEcCCccHHHHHHHHHhCC-CcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccccc-CC-CCeeEEEEc
Q 020573 197 GFWVDLGTGSGAIAIGIARVLGS-KGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKD-VE-GKLSGVVSN 273 (324)
Q Consensus 197 ~~VLDLGcGsG~iai~la~~~~p-~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~-~~-~~fDlIVsN 273 (324)
.+++||+||.|.+++.+.+. +- -..|+++|+++.|++..+.|.. ...++.+|..+.... .. ..+|+|+.+
T Consensus 3 ~~v~dLFaG~Gg~~~g~~~~-G~~~~~v~~~E~d~~a~~~~~~N~~------~~~~~~~Di~~~~~~~~~~~~~D~l~~g 75 (343)
T 1g55_A 3 LRVLELYSGVGGMHHALRES-CIPAQVVAAIDVNTVANEVYKYNFP------HTQLLAKTIEGITLEEFDRLSFDMILMS 75 (343)
T ss_dssp EEEEEETCTTCHHHHHHHHH-TCSEEEEEEECCCHHHHHHHHHHCT------TSCEECSCGGGCCHHHHHHHCCSEEEEC
T ss_pred CeEEEeCcCccHHHHHHHHC-CCCceEEEEEeCCHHHHHHHHHhcc------ccccccCCHHHccHhHcCcCCcCEEEEc
Confidence 47999999999999999886 22 2479999999999999999953 245678888764321 11 269999999
Q ss_pred CCCCCCC
Q 020573 274 PPYIPSD 280 (324)
Q Consensus 274 PPYi~~~ 280 (324)
||+-+-+
T Consensus 76 pPCq~fS 82 (343)
T 1g55_A 76 PPCQPFT 82 (343)
T ss_dssp CC-----
T ss_pred CCCcchh
Confidence 9976543
|
| >3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00019 Score=68.70 Aligned_cols=76 Identities=22% Similarity=0.224 Sum_probs=59.8
Q ss_pred CeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccccc-------CCCCeeE
Q 020573 197 GFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKD-------VEGKLSG 269 (324)
Q Consensus 197 ~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~-------~~~~fDl 269 (324)
-+++||+||.|.+++.+.+. + -..|.++|+++.|++..+.|.. ...++++|+.+.... ..+.+|+
T Consensus 3 ~~vidLFsG~GGlslG~~~a-G-~~~v~avE~d~~a~~t~~~N~~------~~~~~~~DI~~~~~~~~~~~~~~~~~~D~ 74 (376)
T 3g7u_A 3 LNVIDLFSGVGGLSLGAARA-G-FDVKMAVEIDQHAINTHAINFP------RSLHVQEDVSLLNAEIIKGFFKNDMPIDG 74 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHH-T-CEEEEEECSCHHHHHHHHHHCT------TSEEECCCGGGCCHHHHHHHHCSCCCCCE
T ss_pred CeEEEEccCcCHHHHHHHHC-C-CcEEEEEeCCHHHHHHHHHhCC------CCceEecChhhcCHHHHHhhcccCCCeeE
Confidence 37999999999999999886 2 3467899999999999988842 367888998764221 1357999
Q ss_pred EEEcCCCCCCC
Q 020573 270 VVSNPPYIPSD 280 (324)
Q Consensus 270 IVsNPPYi~~~ 280 (324)
|+..||+-+-+
T Consensus 75 i~ggpPCQ~fS 85 (376)
T 3g7u_A 75 IIGGPPCQGFS 85 (376)
T ss_dssp EEECCCCCTTC
T ss_pred EEecCCCCCcc
Confidence 99999987654
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=97.36 E-value=5.4e-05 Score=69.40 Aligned_cols=74 Identities=18% Similarity=0.263 Sum_probs=45.0
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEc-ccccccccCCCCeeEEEE
Q 020573 194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQG-SWFGKLKDVEGKLSGVVS 272 (324)
Q Consensus 194 ~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~g-D~~~~l~~~~~~fDlIVs 272 (324)
.++.+|||||||.|.++..+++.. +...|+|+|+...+...+... +..+. +-+.+... |... +. .+++|+|+|
T Consensus 89 k~~~~VLDLGaAPGGWsQvAa~~~-gv~sV~GvdvG~d~~~~pi~~-~~~g~-~ii~~~~~~dv~~-l~--~~~~DvVLS 162 (282)
T 3gcz_A 89 KPTGIVVDLGCGRGGWSYYAASLK-NVKKVMAFTLGVQGHEKPIMR-TTLGW-NLIRFKDKTDVFN-ME--VIPGDTLLC 162 (282)
T ss_dssp CCCEEEEEETCTTCHHHHHHHTST-TEEEEEEECCCCTTSCCCCCC-CBTTG-GGEEEECSCCGGG-SC--CCCCSEEEE
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhc-CCCeeeeEEeccCcccccccc-ccCCC-ceEEeeCCcchhh-cC--CCCcCEEEe
Confidence 355699999999999999988764 556899999986532222110 00111 11333222 3322 22 368999999
Q ss_pred c
Q 020573 273 N 273 (324)
Q Consensus 273 N 273 (324)
+
T Consensus 163 D 163 (282)
T 3gcz_A 163 D 163 (282)
T ss_dssp C
T ss_pred c
Confidence 6
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00036 Score=66.58 Aligned_cols=69 Identities=17% Similarity=0.180 Sum_probs=52.3
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEc
Q 020573 194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN 273 (324)
Q Consensus 194 ~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsN 273 (324)
.++.++|||||++|..+..++++ +++|+|||+.+-. . .+.. ..+|+++++|.++.... .++||+|||+
T Consensus 210 ~~G~~vlDLGAaPGGWT~~l~~r---g~~V~aVD~~~l~-~----~l~~---~~~V~~~~~d~~~~~~~-~~~~D~vvsD 277 (375)
T 4auk_A 210 ANGMWAVDLGACPGGWTYQLVKR---NMWVYSVDNGPMA-Q----SLMD---TGQVTWLREDGFKFRPT-RSNISWMVCD 277 (375)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHT---TCEEEEECSSCCC-H----HHHT---TTCEEEECSCTTTCCCC-SSCEEEEEEC
T ss_pred CCCCEEEEeCcCCCHHHHHHHHC---CCEEEEEEhhhcC-h----hhcc---CCCeEEEeCccccccCC-CCCcCEEEEc
Confidence 35779999999999999999886 4799999986421 1 1111 24699999999885443 4689999996
Q ss_pred C
Q 020573 274 P 274 (324)
Q Consensus 274 P 274 (324)
-
T Consensus 278 m 278 (375)
T 4auk_A 278 M 278 (375)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00024 Score=64.28 Aligned_cols=69 Identities=25% Similarity=0.351 Sum_probs=43.0
Q ss_pred CCCCeEEEEcCCccHHHHHHHHH--hCC-CcEEEEEeC--CHHHHHHHHHHHHHcCCCCcEEEEEc-ccccccccCCCCe
Q 020573 194 LRDGFWVDLGTGSGAIAIGIARV--LGS-KGSIIAVDL--NPLAAAVAAFNAQRYGLQDIIEIRQG-SWFGKLKDVEGKL 267 (324)
Q Consensus 194 ~~~~~VLDLGcGsG~iai~la~~--~~p-~~~V~gvDi--s~~al~~Ar~N~~~~gl~~rv~~~~g-D~~~~l~~~~~~f 267 (324)
.++.+|+||||+.|..+..+++. .+. .+.|+|+|+ .|-.. ...|+ +-++|.++ |+++. . ..++
T Consensus 72 kpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~~~~P~~~-------~~~Gv-~~i~~~~G~Df~~~-~--~~~~ 140 (269)
T 2px2_A 72 QPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPGHEEPMLM-------QSYGW-NIVTMKSGVDVFYK-P--SEIS 140 (269)
T ss_dssp CCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTTSCCCCCC-------CSTTG-GGEEEECSCCGGGS-C--CCCC
T ss_pred CCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEccccccCCCcc-------cCCCc-eEEEeeccCCccCC-C--CCCC
Confidence 35779999999999999999986 311 245556662 21000 00111 11466668 99872 2 2489
Q ss_pred eEEEEc
Q 020573 268 SGVVSN 273 (324)
Q Consensus 268 DlIVsN 273 (324)
|+|+|+
T Consensus 141 DvVLSD 146 (269)
T 2px2_A 141 DTLLCD 146 (269)
T ss_dssp SEEEEC
T ss_pred CEEEeC
Confidence 999996
|
| >3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A* | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0019 Score=59.90 Aligned_cols=74 Identities=19% Similarity=0.233 Sum_probs=57.8
Q ss_pred eEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcCCCC
Q 020573 198 FWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYI 277 (324)
Q Consensus 198 ~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNPPYi 277 (324)
+|+||+||.|.+.+.+-+. + -..|.++|+++.|++.-+.|. . -.++.+|..+.....-.++|+|+.-||+-
T Consensus 2 kvidLFsG~GG~~~G~~~a-G-~~~v~a~e~d~~a~~ty~~N~-----~--~~~~~~DI~~i~~~~~~~~D~l~ggpPCQ 72 (331)
T 3ubt_Y 2 NLISLFSGAGGLDLGFQKA-G-FRIICANEYDKSIWKTYESNH-----S--AKLIKGDISKISSDEFPKCDGIIGGPPSQ 72 (331)
T ss_dssp EEEEESCTTCHHHHHHHHT-T-CEEEEEEECCTTTHHHHHHHC-----C--SEEEESCGGGCCGGGSCCCSEEECCCCGG
T ss_pred eEEEeCcCccHHHHHHHHC-C-CEEEEEEeCCHHHHHHHHHHC-----C--CCcccCChhhCCHhhCCcccEEEecCCCC
Confidence 6999999999999998775 2 346889999999999888873 1 36788998764332235799999999987
Q ss_pred CCC
Q 020573 278 PSD 280 (324)
Q Consensus 278 ~~~ 280 (324)
+-+
T Consensus 73 ~fS 75 (331)
T 3ubt_Y 73 SWS 75 (331)
T ss_dssp GTE
T ss_pred CcC
Confidence 544
|
| >2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.84 E-value=0.002 Score=59.53 Aligned_cols=79 Identities=14% Similarity=0.055 Sum_probs=59.5
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcE-EEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccccc-C--CCCeeEE
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGS-IIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKD-V--EGKLSGV 270 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~-V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~-~--~~~fDlI 270 (324)
...+++||+||.|.+++.+.+. +-... |+++|+++.|++.-+.|.. ...++.+|..+.... . .+.+|+|
T Consensus 15 ~~~~vidLFaG~GG~~~g~~~a-G~~~~~v~a~E~d~~a~~ty~~N~~------~~~~~~~DI~~i~~~~i~~~~~~Dll 87 (295)
T 2qrv_A 15 KPIRVLSLFDGIATGLLVLKDL-GIQVDRYIASEVCEDSITVGMVRHQ------GKIMYVGDVRSVTQKHIQEWGPFDLV 87 (295)
T ss_dssp CCEEEEEETCTTTHHHHHHHHT-TBCEEEEEEECCCHHHHHHHHHHTT------TCEEEECCGGGCCHHHHHHTCCCSEE
T ss_pred CCCEEEEeCcCccHHHHHHHHC-CCccceEEEEECCHHHHHHHHHhCC------CCceeCCChHHccHHHhcccCCcCEE
Confidence 3458999999999999999875 33333 7999999999988887731 256788998764321 1 1479999
Q ss_pred EEcCCCCCCC
Q 020573 271 VSNPPYIPSD 280 (324)
Q Consensus 271 VsNPPYi~~~ 280 (324)
+.-||+-+-+
T Consensus 88 ~ggpPCQ~fS 97 (295)
T 2qrv_A 88 IGGSPCNDLS 97 (295)
T ss_dssp EECCCCGGGB
T ss_pred EecCCCcccc
Confidence 9999997544
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0032 Score=58.11 Aligned_cols=98 Identities=13% Similarity=0.078 Sum_probs=60.3
Q ss_pred CCCCCeEEEEcC------CccHHHHHHHHHhCCC-cEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCC
Q 020573 193 GLRDGFWVDLGT------GSGAIAIGIARVLGSK-GSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEG 265 (324)
Q Consensus 193 ~~~~~~VLDLGc------GsG~iai~la~~~~p~-~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~ 265 (324)
...+.+|||+|+ -.|.. .++++.|. +.|+++|+.+-.. ..+ .+++||..+... .+
T Consensus 107 vp~gmrVLDLGA~s~kg~APGS~---VLr~~~p~g~~VVavDL~~~~s-----------da~--~~IqGD~~~~~~--~~ 168 (344)
T 3r24_A 107 VPYNMRVIHFGAGSDKGVAPGTA---VLRQWLPTGTLLVDSDLNDFVS-----------DAD--STLIGDCATVHT--AN 168 (344)
T ss_dssp CCTTCEEEEESCCCTTSBCHHHH---HHHHHSCTTCEEEEEESSCCBC-----------SSS--EEEESCGGGEEE--SS
T ss_pred ecCCCEEEeCCCCCCCCCCCcHH---HHHHhCCCCcEEEEeeCccccc-----------CCC--eEEEcccccccc--CC
Confidence 345789999996 56662 33444565 6999999986321 112 459999866333 37
Q ss_pred CeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCC
Q 020573 266 KLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDK 323 (324)
Q Consensus 266 ~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG 323 (324)
+||+|+|+--=- .... .-.++ ..-+.+.+.+++-|.++|+|||
T Consensus 169 k~DLVISDMAPN--------tTG~-~D~d~------~Rs~~L~ElALdfA~~~LkpGG 211 (344)
T 3r24_A 169 KWDLIISDMYDP--------RTKH-VTKEN------DSKEGFFTYLCGFIKQKLALGG 211 (344)
T ss_dssp CEEEEEECCCCT--------TSCS-SCSCC------CCCCTHHHHHHHHHHHHEEEEE
T ss_pred CCCEEEecCCCC--------cCCc-cccch------hHHHHHHHHHHHHHHHhCcCCC
Confidence 899999962100 0000 00000 0113466778899999999998
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0046 Score=57.02 Aligned_cols=74 Identities=18% Similarity=0.210 Sum_probs=48.8
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEc-ccccccccCCCCeeEEEE
Q 020573 194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQG-SWFGKLKDVEGKLSGVVS 272 (324)
Q Consensus 194 ~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~g-D~~~~l~~~~~~fDlIVs 272 (324)
.++.+|+||||++|.++..++... ...+|+|+|+-..--+.= ..++.++. +-|.+.++ |++.. .. .++|+|+|
T Consensus 93 ~~~~~VlDLGaapGGwsq~~~~~~-gv~~V~avdvG~~~he~P-~~~~ql~w-~lV~~~~~~Dv~~l-~~--~~~D~ivc 166 (321)
T 3lkz_A 93 EPVGKVIDLGCGRGGWCYYMATQK-RVQEVRGYTKGGPGHEEP-QLVQSYGW-NIVTMKSGVDVFYR-PS--ECCDTLLC 166 (321)
T ss_dssp CCCEEEEEETCTTCHHHHHHTTCT-TEEEEEEECCCSTTSCCC-CCCCBTTG-GGEEEECSCCTTSS-CC--CCCSEEEE
T ss_pred CCCCEEEEeCCCCCcHHHHHHhhc-CCCEEEEEEcCCCCccCc-chhhhcCC-cceEEEeccCHhhC-CC--CCCCEEEE
Confidence 356699999999999999888874 345799999975411000 00011121 23888888 86553 22 57999999
Q ss_pred c
Q 020573 273 N 273 (324)
Q Consensus 273 N 273 (324)
+
T Consensus 167 D 167 (321)
T 3lkz_A 167 D 167 (321)
T ss_dssp C
T ss_pred E
Confidence 6
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=96.61 E-value=0.002 Score=60.20 Aligned_cols=72 Identities=18% Similarity=0.190 Sum_probs=52.9
Q ss_pred HHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccc
Q 020573 177 ELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSW 256 (324)
Q Consensus 177 e~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~ 256 (324)
..+++.++... . .++..|||.+||||..+++..+. +.+.+|+|+++.++++|++++++.+.. ...+.+|+
T Consensus 239 ~~l~~~~i~~~-~----~~~~~VlDpF~GsGtt~~aa~~~---gr~~ig~e~~~~~~~~~~~r~~~~~~~--~~~~~~~~ 308 (323)
T 1boo_A 239 AKLPEFFIRML-T----EPDDLVVDIFGGSNTTGLVAERE---SRKWISFEMKPEYVAASAFRFLDNNIS--EEKITDIY 308 (323)
T ss_dssp THHHHHHHHHH-C----CTTCEEEETTCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHGGGSCSCSC--HHHHHHHH
T ss_pred HHHHHHHHHHh-C----CCCCEEEECCCCCCHHHHHHHHc---CCCEEEEeCCHHHHHHHHHHHHhcccc--hHHHHHHH
Confidence 34566655544 1 24679999999999999988774 479999999999999999998766542 34444444
Q ss_pred cc
Q 020573 257 FG 258 (324)
Q Consensus 257 ~~ 258 (324)
.+
T Consensus 309 ~~ 310 (323)
T 1boo_A 309 NR 310 (323)
T ss_dssp HH
T ss_pred HH
Confidence 33
|
| >3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0014 Score=61.46 Aligned_cols=76 Identities=14% Similarity=0.161 Sum_probs=56.1
Q ss_pred CCeEEEEcCCccHHHHHHHHHhCC-CcEE-EEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccccc-C-CCCeeEEE
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLGS-KGSI-IAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKD-V-EGKLSGVV 271 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~p-~~~V-~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~-~-~~~fDlIV 271 (324)
.-+++||+||.|.+.+.+.+. +- ...| .++|+++.|++.-+.|.. + . ++++|..+.... . ...+|+++
T Consensus 10 ~~~vidLFaG~GG~~~G~~~a-G~~~~~v~~a~e~d~~a~~ty~~N~~-----~-~-~~~~DI~~~~~~~i~~~~~Dil~ 81 (327)
T 3qv2_A 10 QVNVIEFFSGIGGLRSSYERS-SININATFIPFDINEIANKIYSKNFK-----E-E-VQVKNLDSISIKQIESLNCNTWF 81 (327)
T ss_dssp CEEEEEETCTTTHHHHHHHHS-SCCCCEEEEEECCCHHHHHHHHHHHC-----C-C-CBCCCTTTCCHHHHHHTCCCEEE
T ss_pred CCEEEEECCChhHHHHHHHHc-CCCceEEEEEEECCHHHHHHHHHHCC-----C-C-cccCChhhcCHHHhccCCCCEEE
Confidence 348999999999999999875 32 2356 799999999999998852 1 1 556777653221 1 12699999
Q ss_pred EcCCCCCC
Q 020573 272 SNPPYIPS 279 (324)
Q Consensus 272 sNPPYi~~ 279 (324)
..||+-+-
T Consensus 82 ggpPCQ~f 89 (327)
T 3qv2_A 82 MSPPCQPY 89 (327)
T ss_dssp ECCCCTTC
T ss_pred ecCCccCc
Confidence 99998765
|
| >4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda} | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0034 Score=59.03 Aligned_cols=77 Identities=18% Similarity=0.232 Sum_probs=57.8
Q ss_pred CeEEEEcCCccHHHHHHHHHhCCC-cEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccccc-C-CCCeeEEEEc
Q 020573 197 GFWVDLGTGSGAIAIGIARVLGSK-GSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKD-V-EGKLSGVVSN 273 (324)
Q Consensus 197 ~~VLDLGcGsG~iai~la~~~~p~-~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~-~-~~~fDlIVsN 273 (324)
-+++||+||.|.+.+.+.+. +-. ..|.++|+++.|++.-+.|.. ...++.+|+.+.... . ...+|+++.-
T Consensus 4 ~~~idLFaG~GG~~~G~~~a-G~~~~~v~a~e~d~~a~~ty~~N~~------~~~~~~~DI~~~~~~~~~~~~~D~l~gg 76 (333)
T 4h0n_A 4 HKILELYSGIGGMHCAWKES-GLDGEIVAAVDINTVANSVYKHNFP------ETNLLNRNIQQLTPQVIKKWNVDTILMS 76 (333)
T ss_dssp EEEEEETCTTTHHHHHHHHH-TCSEEEEEEECCCHHHHHHHHHHCT------TSCEECCCGGGCCHHHHHHTTCCEEEEC
T ss_pred CEEEEECcCccHHHHHHHHc-CCCceEEEEEeCCHHHHHHHHHhCC------CCceeccccccCCHHHhccCCCCEEEec
Confidence 37999999999999999876 322 458899999999999888842 245677887764221 1 1369999999
Q ss_pred CCCCCCC
Q 020573 274 PPYIPSD 280 (324)
Q Consensus 274 PPYi~~~ 280 (324)
||+-+-+
T Consensus 77 pPCQ~fS 83 (333)
T 4h0n_A 77 PPCQPFT 83 (333)
T ss_dssp CCCCCSE
T ss_pred CCCcchh
Confidence 9987654
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0012 Score=60.81 Aligned_cols=36 Identities=25% Similarity=0.160 Sum_probs=30.1
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHH
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPL 231 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~ 231 (324)
++.+||||||+.|.++..+++.. +...|+|+|+...
T Consensus 81 ~g~~vlDLGaaPGgWsqva~~~~-gv~sV~Gvdlg~~ 116 (300)
T 3eld_A 81 ITGRVLDLGCGRGGWSYYAAAQK-EVMSVKGYTLGIE 116 (300)
T ss_dssp CCEEEEEETCTTCHHHHHHHTST-TEEEEEEECCCCT
T ss_pred CCCEEEEcCCCCCHHHHHHHHhc-CCceeeeEEeccc
Confidence 56799999999999999999863 4467999999753
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0035 Score=58.57 Aligned_cols=65 Identities=18% Similarity=0.129 Sum_probs=48.5
Q ss_pred ccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCH---HHHHHHHHHHHHcC
Q 020573 172 PRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNP---LAAAVAAFNAQRYG 244 (324)
Q Consensus 172 Prp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~---~al~~Ar~N~~~~g 244 (324)
|.+-...|++.++... . .++..|||.+||||..++++.+. +.+.+|+|+++ ..+++|++++++.+
T Consensus 224 ~~~kp~~l~~~~i~~~-~----~~~~~vlDpF~GsGtt~~aa~~~---~r~~ig~e~~~~~~~~~~~~~~Rl~~~~ 291 (319)
T 1eg2_A 224 PTQKPAAVIERLVRAL-S----HPGSTVLDFFAGSGVTARVAIQE---GRNSICTDAAPVFKEYYQKQLTFLQDDG 291 (319)
T ss_dssp TTCCCHHHHHHHHHHH-S----CTTCEEEETTCTTCHHHHHHHHH---TCEEEEEESSTHHHHHHHHHHHHC----
T ss_pred CCCCCHHHHHHHHHHh-C----CCCCEEEecCCCCCHHHHHHHHc---CCcEEEEECCccHHHHHHHHHHHHHHcc
Confidence 4334455667666655 2 24679999999999999998886 47999999999 99999999987654
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0059 Score=54.68 Aligned_cols=74 Identities=18% Similarity=0.246 Sum_probs=51.4
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEc-ccccccccCCCCeeEEEE
Q 020573 194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQG-SWFGKLKDVEGKLSGVVS 272 (324)
Q Consensus 194 ~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~g-D~~~~l~~~~~~fDlIVs 272 (324)
.++.+|+||||++|.++..++... ...+|+|+|+-..--+.= ..++.+|. +.|+|.++ |++...+ .++|.|+|
T Consensus 77 ~~g~~VvDLGaapGGWSq~~a~~~-g~~~V~avdvG~~ghe~P-~~~~s~gw-n~v~fk~gvDv~~~~~---~~~Dtllc 150 (267)
T 3p8z_A 77 IPEGRVIDLGCGRGGWSYYCAGLK-KVTEVRGYTKGGPGHEEP-VPMSTYGW-NIVKLMSGKDVFYLPP---EKCDTLLC 150 (267)
T ss_dssp CCCEEEEEESCTTSHHHHHHHTST-TEEEEEEECCCSTTSCCC-CCCCCTTT-TSEEEECSCCGGGCCC---CCCSEEEE
T ss_pred CCCCEEEEcCCCCCcHHHHHHHhc-CCCEEEEEecCCCCccCc-chhhhcCc-CceEEEeccceeecCC---ccccEEEE
Confidence 356699999999999999888875 445899999975321100 00122333 35999999 9765322 57999999
Q ss_pred c
Q 020573 273 N 273 (324)
Q Consensus 273 N 273 (324)
+
T Consensus 151 D 151 (267)
T 3p8z_A 151 D 151 (267)
T ss_dssp C
T ss_pred e
Confidence 6
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0018 Score=60.44 Aligned_cols=66 Identities=21% Similarity=0.271 Sum_probs=44.6
Q ss_pred CcEEEEEcccccccccC-CCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 247 DIIEIRQGSWFGKLKDV-EGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 247 ~rv~~~~gD~~~~l~~~-~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
++..+++||..+.+..+ .++||+|++||||....+. .|.. . ...+-++.+..+++.+.++|||||.
T Consensus 13 ~~~~ii~gD~~~~l~~l~~~svDlI~tDPPY~~~~~~--------~y~~-~---~~~~~~~~l~~~l~~~~rvLk~~G~ 79 (323)
T 1boo_A 13 SNGSMYIGDSLELLESFPEESISLVMTSPPFALQRKK--------EYGN-L---EQHEYVDWFLSFAKVVNKKLKPDGS 79 (323)
T ss_dssp SSEEEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSC--------SSCS-C---HHHHHHHHHHHHHHHHHHHEEEEEE
T ss_pred CCceEEeCcHHHHHhhCCCCCeeEEEECCCCCCCccc--------ccCC-c---CHHHHHHHHHHHHHHHHHHCcCCcE
Confidence 35889999988765533 4689999999999754321 0100 0 0011245677889999999999984
|
| >2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56 | Back alignment and structure |
|---|
Probab=96.34 E-value=0.012 Score=56.70 Aligned_cols=64 Identities=13% Similarity=0.027 Sum_probs=50.7
Q ss_pred CCCCeEEEEcCCccHHHHHHH-HHhCCCcEEEEEeCCHHHHHHHHHHHHH--cCCC-CcEEEEEcccc
Q 020573 194 LRDGFWVDLGTGSGAIAIGIA-RVLGSKGSIIAVDLNPLAAAVAAFNAQR--YGLQ-DIIEIRQGSWF 257 (324)
Q Consensus 194 ~~~~~VLDLGcGsG~iai~la-~~~~p~~~V~gvDis~~al~~Ar~N~~~--~gl~-~rv~~~~gD~~ 257 (324)
.++..++|+|++.|..++.++ +..++.++|+++|-++.+.+..++|++. |+.. +++++++.-+.
T Consensus 225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~~~N~~~~~~v~~~~~al~ 292 (409)
T 2py6_A 225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHGCGAG 292 (409)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEECSEEC
T ss_pred CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhhhccCCCCCEEEEEeEEE
Confidence 356799999999999999988 4543347999999999999999999998 4333 56887765443
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=96.22 E-value=0.048 Score=52.14 Aligned_cols=76 Identities=20% Similarity=0.020 Sum_probs=47.2
Q ss_pred CCeEEEEcCCccHHHHHHHHH-------------h---CCCcEEEEEeCC-----------HHHHHHHHHHHHHcCCCCc
Q 020573 196 DGFWVDLGTGSGAIAIGIARV-------------L---GSKGSIIAVDLN-----------PLAAAVAAFNAQRYGLQDI 248 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~-------------~---~p~~~V~gvDis-----------~~al~~Ar~N~~~~gl~~r 248 (324)
.-+|+|+||++|..++.+... . .|..+|+..|+- +...+.++ +..|-..+
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~---~~~g~~~~ 129 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLE---KENGRKIG 129 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHH---HHTCCCTT
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhh---hhccCCCC
Confidence 468999999999999888766 1 256789999987 43333221 12332112
Q ss_pred EEEEEc---ccccccccCCCCeeEEEEcCC
Q 020573 249 IEIRQG---SWFGKLKDVEGKLSGVVSNPP 275 (324)
Q Consensus 249 v~~~~g---D~~~~l~~~~~~fDlIVsNPP 275 (324)
..|+.| ++..-+- ..+++|+|+||--
T Consensus 130 ~~f~~gvpgSFy~rlf-p~~S~d~v~Ss~a 158 (384)
T 2efj_A 130 SCLIGAMPGSFYSRLF-PEESMHFLHSCYC 158 (384)
T ss_dssp SEEEEECCSCTTSCCS-CTTCEEEEEEESC
T ss_pred ceEEEecchhhhhccC-CCCceEEEEecce
Confidence 345544 3333222 2579999999844
|
| >3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A | Back alignment and structure |
|---|
Probab=96.03 E-value=0.0079 Score=59.34 Aligned_cols=81 Identities=14% Similarity=0.045 Sum_probs=57.7
Q ss_pred CCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc--------------
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK-------------- 261 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~-------------- 261 (324)
.-+++||+||.|.+++.+.+. .-..|+++|+++.|++.-+.|.. ......++.+|..+...
T Consensus 88 ~~~viDLFaG~GGlslG~~~a--G~~~v~avE~d~~A~~ty~~N~~---~~p~~~~~~~DI~~i~~~~~~~~~~~~~~~~ 162 (482)
T 3me5_A 88 AFRFIDLFAGIGGIRRGFESI--GGQCVFTSEWNKHAVRTYKANHY---CDPATHHFNEDIRDITLSHQEGVSDEAAAEH 162 (482)
T ss_dssp SEEEEEESCTTSHHHHHHHTT--TEEEEEEECCCHHHHHHHHHHSC---CCTTTCEEESCTHHHHCTTCTTSCHHHHHHH
T ss_pred cceEEEecCCccHHHHHHHHC--CCEEEEEEeCCHHHHHHHHHhcc---cCCCcceeccchhhhhhccccccchhhHHhh
Confidence 358999999999999998764 22458999999999988887741 11235567788765321
Q ss_pred --cCCCCeeEEEEcCCCCCCCC
Q 020573 262 --DVEGKLSGVVSNPPYIPSDD 281 (324)
Q Consensus 262 --~~~~~fDlIVsNPPYi~~~~ 281 (324)
...+.+|+|+.-||+-+.+.
T Consensus 163 i~~~~~~~Dvl~gGpPCQ~FS~ 184 (482)
T 3me5_A 163 IRQHIPEHDVLLAGFPCQPFSL 184 (482)
T ss_dssp HHHHSCCCSEEEEECCCCCC--
T ss_pred hhhcCCCCCEEEecCCCcchhh
Confidence 11246899999999876543
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.03 E-value=0.023 Score=54.17 Aligned_cols=79 Identities=18% Similarity=0.049 Sum_probs=45.5
Q ss_pred CCeEEEEcCCccHHHHHHHHHh--------------CCCcEEEEEeCCHHHHHHHHHHHHHc-----------CCCCc--
Q 020573 196 DGFWVDLGTGSGAIAIGIARVL--------------GSKGSIIAVDLNPLAAAVAAFNAQRY-----------GLQDI-- 248 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~--------------~p~~~V~gvDis~~al~~Ar~N~~~~-----------gl~~r-- 248 (324)
..+|+|+|||+|..++.+.... .|..+|+..|+-..-.+..=+++... +...+
T Consensus 53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~ 132 (374)
T 3b5i_A 53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY 132 (374)
T ss_dssp CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence 4689999999999998874321 25678888887665543332222211 00001
Q ss_pred -EEEEEcccccccccCCCCeeEEEEcCC
Q 020573 249 -IEIRQGSWFGKLKDVEGKLSGVVSNPP 275 (324)
Q Consensus 249 -v~~~~gD~~~~l~~~~~~fDlIVsNPP 275 (324)
+.-+-|++..-+- ..++||+|+||--
T Consensus 133 f~~gvpgSFy~rlf-P~~S~d~v~Ss~a 159 (374)
T 3b5i_A 133 FVAGVPGSFYRRLF-PARTIDFFHSAFS 159 (374)
T ss_dssp EEEEEESCTTSCCS-CTTCEEEEEEESC
T ss_pred EEEecChhhhcccC-CCcceEEEEecce
Confidence 1122344433222 3579999999854
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=95.87 E-value=0.0057 Score=58.08 Aligned_cols=125 Identities=16% Similarity=0.045 Sum_probs=70.2
Q ss_pred CCeEEEEcCCccHHHHHHHHH---------------hCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEE---cccc
Q 020573 196 DGFWVDLGTGSGAIAIGIARV---------------LGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQ---GSWF 257 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~---------------~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~---gD~~ 257 (324)
.-+|+|+||++|..++.+... -.|..+|+..|+-.+..+.+-+++....-..+..|+. |++.
T Consensus 52 ~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgSFy 131 (359)
T 1m6e_X 52 RLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFY 131 (359)
T ss_dssp EECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSS
T ss_pred ceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchhhh
Confidence 457999999999877655433 1356799999998888777766654211001234443 4554
Q ss_pred cccccCCCCeeEEEEcCCCCCCCCcccchhhhhc-----c----cccccccCC-CCcHHHHHHHHHHHhcccCCCCC
Q 020573 258 GKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGK-----H----EPRLALDGG-VDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 258 ~~l~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~-----~----eP~~aL~gg-~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
.-+- ..+++|+|+||--..=-.. .+..+.. | .|......- ..--.++..|++.-++.|+|||.
T Consensus 132 ~rlf-p~~S~d~v~Ss~aLHWls~---~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~ 204 (359)
T 1m6e_X 132 GRLF-PRNTLHFIHSSYSLMWLSQ---VPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGR 204 (359)
T ss_dssp SCCS-CTTCBSCEEEESCTTBCSS---CCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCE
T ss_pred hccC-CCCceEEEEehhhhhhccc---CchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCce
Confidence 4332 2579999999843221010 0101000 0 000000000 01135677899999999999994
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=95.45 E-value=0.0038 Score=56.25 Aligned_cols=63 Identities=22% Similarity=0.257 Sum_probs=41.7
Q ss_pred EEEEEcccccccccC-CCCeeEEEEcCCCCCC-CCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 249 IEIRQGSWFGKLKDV-EGKLSGVVSNPPYIPS-DDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 249 v~~~~gD~~~~l~~~-~~~fDlIVsNPPYi~~-~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
.+++++|..+.+..+ .++||+|+++|||-.. .+.... . ...+=++.+..+++.+.++|+|||.
T Consensus 5 ~~l~~gD~~~~l~~l~~~~vdlI~~DPPY~~~~~~~d~~-------~------~~~~y~~~~~~~l~~~~~~Lk~~g~ 69 (260)
T 1g60_A 5 NKIHQMNCFDFLDQVENKSVQLAVIDPPYNLSKADWDSF-------D------SHNEFLAFTYRWIDKVLDKLDKDGS 69 (260)
T ss_dssp SSEEECCHHHHHHHSCTTCEEEEEECCCCSSCSSGGGCC-------S------SHHHHHHHHHHHHHHHHHHEEEEEE
T ss_pred CeEEechHHHHHHhccccccCEEEECCCCCCCccccccc-------C------CHHHHHHHHHHHHHHHHHHhcCCeE
Confidence 567889987755433 3689999999999744 211100 0 0111245677888999999999984
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=94.70 E-value=0.0082 Score=61.48 Aligned_cols=83 Identities=16% Similarity=0.250 Sum_probs=54.0
Q ss_pred CCeEEEEcCCccHHHHHHHHHhC------C-----CcEEEEEeC---CHHHHHHHH-----------HHHHHc-----C-
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLG------S-----KGSIIAVDL---NPLAAAVAA-----------FNAQRY-----G- 244 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~------p-----~~~V~gvDi---s~~al~~Ar-----------~N~~~~-----g- 244 (324)
.-+|+|+|.|+|...+.+.+.+. | ..+++++|. +.+-+..|- +-++.. |
T Consensus 59 ~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 138 (689)
T 3pvc_A 59 SCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAGC 138 (689)
T ss_dssp EEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSEE
T ss_pred ceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCCc
Confidence 34899999999999988877541 1 157999999 444443221 112211 1
Q ss_pred ----CCC---cEEEEEcccccccccC----CCCeeEEEEcCCCCCC
Q 020573 245 ----LQD---IIEIRQGSWFGKLKDV----EGKLSGVVSNPPYIPS 279 (324)
Q Consensus 245 ----l~~---rv~~~~gD~~~~l~~~----~~~fDlIVsNPPYi~~ 279 (324)
+.+ .++++.||..+.++.+ .+++|.++.++ |-|.
T Consensus 139 ~r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~flD~-f~p~ 183 (689)
T 3pvc_A 139 HRILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLDG-FAPA 183 (689)
T ss_dssp EEEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEECS-SCC-
T ss_pred eEEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEECC-CCCC
Confidence 111 4678899998877654 36899999985 4443
|
| >3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A* | Back alignment and structure |
|---|
Probab=94.44 E-value=0.085 Score=48.91 Aligned_cols=105 Identities=16% Similarity=0.159 Sum_probs=62.4
Q ss_pred CeEEEEcCCccHHHHHHHH---HhCCCcE--EEEEeCCH--------H-HHHHHHHHHHHcC-C-CC--cEEEEEccccc
Q 020573 197 GFWVDLGTGSGAIAIGIAR---VLGSKGS--IIAVDLNP--------L-AAAVAAFNAQRYG-L-QD--IIEIRQGSWFG 258 (324)
Q Consensus 197 ~~VLDLGcGsG~iai~la~---~~~p~~~--V~gvDis~--------~-al~~Ar~N~~~~g-l-~~--rv~~~~gD~~~ 258 (324)
-+|+|+|-|+|..++...+ +..++.+ ++++|..+ + .-++.+.-..... . .. .+.+..||+.+
T Consensus 98 ~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GDa~~ 177 (308)
T 3vyw_A 98 IRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGDARK 177 (308)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESCHHH
T ss_pred cEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEechHHH
Confidence 4799999999986654432 2245544 56777522 1 1122222222210 0 12 25678899988
Q ss_pred ccccCC-CCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 259 KLKDVE-GKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 259 ~l~~~~-~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
.++.+. .+||+|+.++ |-|... |+ .|.+ .+++..+++++|||+
T Consensus 178 ~l~~l~~~~~Da~flDg-FsP~kN-----Pe--LWs~---------------e~f~~l~~~~~pgg~ 221 (308)
T 3vyw_A 178 RIKEVENFKADAVFHDA-FSPYKN-----PE--LWTL---------------DFLSLIKERIDEKGY 221 (308)
T ss_dssp HGGGCCSCCEEEEEECC-SCTTTS-----GG--GGSH---------------HHHHHHHTTEEEEEE
T ss_pred HHhhhcccceeEEEeCC-CCcccC-----cc--cCCH---------------HHHHHHHHHhCCCcE
Confidence 776654 4799999984 555433 22 1221 578888999999984
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=94.37 E-value=0.017 Score=53.78 Aligned_cols=62 Identities=11% Similarity=0.203 Sum_probs=43.2
Q ss_pred cEEEE-EcccccccccC-CCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 248 IIEIR-QGSWFGKLKDV-EGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 248 rv~~~-~gD~~~~l~~~-~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
...++ +||..+.+..+ .++||+|+.+|||-...+ .+. ...+=++.+...+..+.++|+|||+
T Consensus 38 ~~~l~i~gD~l~~L~~l~~~svDlI~tDPPY~~~~d---------~~~------~~~~~~~~~~~~l~~~~rvLk~~G~ 101 (319)
T 1eg2_A 38 TRHVYDVCDCLDTLAKLPDDSVQLIICDPPYNIMLA---------DWD------DHMDYIGWAKRWLAEAERVLSPTGS 101 (319)
T ss_dssp EEEEEEECCHHHHHHTSCTTCEEEEEECCCSBCCGG---------GGG------TCSSHHHHHHHHHHHHHHHEEEEEE
T ss_pred cceEEECCcHHHHHHhCccCCcCEEEECCCCCCCCC---------Ccc------CHHHHHHHHHHHHHHHHHHcCCCeE
Confidence 46788 99998765543 358999999999964311 110 1122256777888999999999984
|
| >3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A* | Back alignment and structure |
|---|
Probab=93.56 E-value=0.15 Score=54.37 Aligned_cols=80 Identities=15% Similarity=0.147 Sum_probs=56.7
Q ss_pred CCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccc------------cc-c
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGK------------LK-D 262 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~------------l~-~ 262 (324)
.-+++||+||.|.+++.+.+. +-...|.|+|+++.|++.-+.|. . ...++.+|+.+. .. .
T Consensus 540 ~l~~iDLFaG~GGlslGl~~A-G~~~vv~avEid~~A~~ty~~N~-----p-~~~~~~~DI~~l~~~~~~~di~~~~~~~ 612 (1002)
T 3swr_A 540 KLRTLDVFSGCGGLSEGFHQA-GISDTLWAIEMWDPAAQAFRLNN-----P-GSTVFTEDCNILLKLVMAGETTNSRGQR 612 (1002)
T ss_dssp CEEEEEESCTTSHHHHHHHHH-TSEEEEEEECSSHHHHHHHHHHC-----T-TSEEECSCHHHHHHHHHHTCSBCTTCCB
T ss_pred CCeEEEeccCccHHHHHHHHC-CCCceEEEEECCHHHHHHHHHhC-----C-CCccccccHHHHhhhccchhhhhhhhhh
Confidence 448999999999999999875 21136889999999998888773 1 255666664221 00 0
Q ss_pred --CCCCeeEEEEcCCCCCCCCc
Q 020573 263 --VEGKLSGVVSNPPYIPSDDI 282 (324)
Q Consensus 263 --~~~~fDlIVsNPPYi~~~~~ 282 (324)
..+.+|+|+.-||.-+.+..
T Consensus 613 lp~~~~vDll~GGpPCQ~FS~a 634 (1002)
T 3swr_A 613 LPQKGDVEMLCGGPPCQGFSGM 634 (1002)
T ss_dssp CCCTTTCSEEEECCCCTTCCSS
T ss_pred cccCCCeeEEEEcCCCcchhhh
Confidence 12579999999998765543
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=93.49 E-value=0.048 Score=50.51 Aligned_cols=45 Identities=27% Similarity=0.316 Sum_probs=37.0
Q ss_pred CCCCCCeEEEEcCCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 020573 192 DGLRDGFWVDLGTGS-GAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF 238 (324)
Q Consensus 192 ~~~~~~~VLDLGcGs-G~iai~la~~~~p~~~V~gvDis~~al~~Ar~ 238 (324)
...++.+||-.|+|. |.+++.+|+.. +++|+++|.+++.++.+++
T Consensus 163 ~~~~g~~VlV~GaG~vG~~a~qla~~~--Ga~Vi~~~~~~~~~~~~~~ 208 (340)
T 3s2e_A 163 DTRPGQWVVISGIGGLGHVAVQYARAM--GLRVAAVDIDDAKLNLARR 208 (340)
T ss_dssp TCCTTSEEEEECCSTTHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHH
Confidence 344677899999985 89999999985 4699999999998887654
|
| >1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52 | Back alignment and structure |
|---|
Probab=93.27 E-value=0.32 Score=46.51 Aligned_cols=64 Identities=20% Similarity=0.250 Sum_probs=41.6
Q ss_pred HHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhC------CCcEEEEEeCCHHHHHHHHHHHH
Q 020573 177 ELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLG------SKGSIIAVDLNPLAAAVAAFNAQ 241 (324)
Q Consensus 177 e~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~------p~~~V~gvDis~~al~~Ar~N~~ 241 (324)
|++..++.+.. .......+-.|+|+|.|+|.++.-+.+.+. ...+++.||+|+...+.-++++.
T Consensus 63 e~la~~~~~~w-~~~g~p~~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q~~~L~ 132 (387)
T 1zkd_A 63 ELLGLWSASVW-KAADEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLA 132 (387)
T ss_dssp HHHHHHHHHHH-HHTTCCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHST
T ss_pred HHHHHHHHHHH-HHcCCCCCcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHHHHHhc
Confidence 44444444433 222222345799999999999988876541 23589999999987775555443
|
| >4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A* | Back alignment and structure |
|---|
Probab=93.22 E-value=0.29 Score=50.73 Aligned_cols=44 Identities=25% Similarity=0.351 Sum_probs=35.3
Q ss_pred CCeEEEEcCCccHHHHHHHHHhC---C-CcEEEEEeCCHHHHHHHHHH
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLG---S-KGSIIAVDLNPLAAAVAAFN 239 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~---p-~~~V~gvDis~~al~~Ar~N 239 (324)
..+|+||+||.|.++..+.+.-+ . -..+.++|+++.|++.-+.|
T Consensus 212 ~ltvIDLFAG~GGls~Gfe~AG~~~~~~f~vv~AvE~d~~A~~Ty~~N 259 (784)
T 4ft4_B 212 TATLLDLYSGCGGMSTGLCLGAALSGLKLETRWAVDFNSFACQSLKYN 259 (784)
T ss_dssp EEEEEEETCTTSHHHHHHHHHHHHHTEEEEEEEEEESCHHHHHHHHHH
T ss_pred CCeEEEeCcCccHHHHHHHHhCcccCCceeEEEEEeCCHHHHHHHHHH
Confidence 34799999999999999877510 0 13688999999999988888
|
| >3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A* | Back alignment and structure |
|---|
Probab=92.46 E-value=0.3 Score=44.03 Aligned_cols=78 Identities=12% Similarity=0.063 Sum_probs=51.6
Q ss_pred CCeEEEEcCCccHHHHHHHHH---h---CCCcEEEEEe-----CCH----------------------HHHHH---HHHH
Q 020573 196 DGFWVDLGTGSGAIAIGIARV---L---GSKGSIIAVD-----LNP----------------------LAAAV---AAFN 239 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~---~---~p~~~V~gvD-----is~----------------------~al~~---Ar~N 239 (324)
++.|+|+|+-.|.-++.++.. + +++.+|+++| -.+ +.++. .++|
T Consensus 70 pG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~~~ 149 (257)
T 3tos_A 70 PGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAHEC 149 (257)
T ss_dssp CSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHHHT
T ss_pred CCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHHhh
Confidence 568999999999988887653 1 2467999999 211 11111 1122
Q ss_pred HHHcCC-CCcEEEEEccccccccc-----CCCCeeEEEEc
Q 020573 240 AQRYGL-QDIIEIRQGSWFGKLKD-----VEGKLSGVVSN 273 (324)
Q Consensus 240 ~~~~gl-~~rv~~~~gD~~~~l~~-----~~~~fDlIVsN 273 (324)
.++.+. .++++++.|++.+.++. ..+++|+|..+
T Consensus 150 ~~~~g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID 189 (257)
T 3tos_A 150 SDFFGHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFD 189 (257)
T ss_dssp TSTTTTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEEC
T ss_pred hhhcCCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEc
Confidence 223454 47899999999876543 13479999984
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=92.18 E-value=0.37 Score=48.89 Aligned_cols=81 Identities=11% Similarity=0.147 Sum_probs=53.2
Q ss_pred CeEEEEcCCccHHHHHHHHHhC-----------CCcEEEEEeC---CHHHHHHHH-----------HHHHHcCC------
Q 020573 197 GFWVDLGTGSGAIAIGIARVLG-----------SKGSIIAVDL---NPLAAAVAA-----------FNAQRYGL------ 245 (324)
Q Consensus 197 ~~VLDLGcGsG~iai~la~~~~-----------p~~~V~gvDi---s~~al~~Ar-----------~N~~~~gl------ 245 (324)
-+|+|+|-|+|...+...+.+. ...+++++|. +.+-+..+- +-.+....
T Consensus 68 ~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 147 (676)
T 3ps9_A 68 FVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPGCH 147 (676)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSEEE
T ss_pred eEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCCce
Confidence 4899999999998888776541 1246999999 776665332 22222211
Q ss_pred ----C---CcEEEEEcccccccccC----CCCeeEEEEcCCCCC
Q 020573 246 ----Q---DIIEIRQGSWFGKLKDV----EGKLSGVVSNPPYIP 278 (324)
Q Consensus 246 ----~---~rv~~~~gD~~~~l~~~----~~~fDlIVsNPPYi~ 278 (324)
. -.+++..||..+.++.+ ..+||.|+.++ |-|
T Consensus 148 ~~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~d~~~~D~-f~p 190 (676)
T 3ps9_A 148 RLLLDAGRVTLDLWFGDINELTSQLDDSLNQKVDAWFLDG-FAP 190 (676)
T ss_dssp EEEEGGGTEEEEEEESCHHHHGGGBCGGGTTCEEEEEECC-SCG
T ss_pred EEEecCCcEEEEEecCCHHHHHHhcccccCCcccEEEECC-CCC
Confidence 0 13567788887766654 36899999975 443
|
| >4dkj_A Cytosine-specific methyltransferase; CG-specificity, DNA intercalation, CPG sequence, cytosine C5 methylation; HET: DNA C37 5CM SAH; 2.15A {Mycoplasma penetrans} | Back alignment and structure |
|---|
Probab=92.10 E-value=0.2 Score=48.08 Aligned_cols=46 Identities=13% Similarity=-0.150 Sum_probs=36.3
Q ss_pred CCeEEEEcCCccHHHHHHHHHhCCCcE----EEEEeCCHHHHHHHHHHHH
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLGSKGS----IIAVDLNPLAAAVAAFNAQ 241 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~p~~~----V~gvDis~~al~~Ar~N~~ 241 (324)
.-+++|++||.|.+...+-+.-.+-.. |.++|+++.|++.-+.|..
T Consensus 10 ~lrvldLFsGiGG~~~Gl~~aG~~~~~~~~~v~avEid~~A~~ty~~n~~ 59 (403)
T 4dkj_A 10 VIKVFEAFAGIGSQFKALKNIARSKNWEIQHSGMVEWFVDAIVSYVAIHS 59 (403)
T ss_dssp EEEEEEETCTTCHHHHHHHHHHHHHTEEEEEEEEECCBHHHHHHHHHHHC
T ss_pred cceEEEEecCcCHHHHHHHHhCCccccceeeEEEEecCHHHHHHHHHHcC
Confidence 348999999999999999775100123 8899999999998888864
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=91.16 E-value=0.24 Score=46.00 Aligned_cols=44 Identities=16% Similarity=0.178 Sum_probs=35.1
Q ss_pred CCCCCeEEEEcCCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 020573 193 GLRDGFWVDLGTGS-GAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF 238 (324)
Q Consensus 193 ~~~~~~VLDLGcGs-G~iai~la~~~~p~~~V~gvDis~~al~~Ar~ 238 (324)
..++.+||-.|+|. |.+++.+|+.. +++|+++|.+++.++.+++
T Consensus 166 ~~~g~~VlV~GaG~vG~~a~qla~~~--Ga~Vi~~~~~~~~~~~~~~ 210 (352)
T 1e3j_A 166 VQLGTTVLVIGAGPIGLVSVLAAKAY--GAFVVCTARSPRRLEVAKN 210 (352)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHH
Confidence 34577899999874 77888888875 4679999999998887753
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=90.76 E-value=0.56 Score=44.31 Aligned_cols=70 Identities=14% Similarity=0.157 Sum_probs=50.7
Q ss_pred CCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCc-EEEEEcccccccccCCCCeeEEEEcC
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDI-IEIRQGSWFGKLKDVEGKLSGVVSNP 274 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~r-v~~~~gD~~~~l~~~~~~fDlIVsNP 274 (324)
+++||.++.+-|++++.++.. .++.+.-|--+...++.|++++++.+. +++... .+ ...+.||+|+.-.
T Consensus 39 ~~~~~~~~d~~gal~~~~~~~-----~~~~~~ds~~~~~~~~~n~~~~~~~~~~~~~~~~--~~---~~~~~~~~v~~~l 108 (375)
T 4dcm_A 39 RGPVLILNDAFGALSCALAEH-----KPYSIGDSYISELATRENLRLNGIDESSVKFLDS--TA---DYPQQPGVVLIKV 108 (375)
T ss_dssp CSCEEEECCSSSHHHHHTGGG-----CCEEEESCHHHHHHHHHHHHHTTCCGGGSEEEET--TS---CCCSSCSEEEEEC
T ss_pred CCCEEEECCCCCHHHHhhccC-----CceEEEhHHHHHHHHHHHHHHcCCCccceEeccc--cc---ccccCCCEEEEEc
Confidence 458999999999999998753 345554477788889999999998752 555432 22 2235899999854
Q ss_pred C
Q 020573 275 P 275 (324)
Q Consensus 275 P 275 (324)
|
T Consensus 109 p 109 (375)
T 4dcm_A 109 P 109 (375)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A* | Back alignment and structure |
|---|
Probab=90.60 E-value=0.66 Score=50.96 Aligned_cols=79 Identities=16% Similarity=0.184 Sum_probs=56.1
Q ss_pred CCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccc----------------
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGK---------------- 259 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~---------------- 259 (324)
.-+++||+||.|.+++.+-+. +-...|.++|+++.|++.-+.|. . ...++.+|..+.
T Consensus 851 ~l~viDLFsG~GGlslGfe~A-G~~~vv~avEid~~A~~ty~~N~-----p-~~~~~~~DI~~l~~~~~~gdi~~~~~~~ 923 (1330)
T 3av4_A 851 KLRTLDVFSGCGGLSEGFHQA-GISETLWAIEMWDPAAQAFRLNN-----P-GTTVFTEDCNVLLKLVMAGEVTNSLGQR 923 (1330)
T ss_dssp CEEEEEETCTTSHHHHHHHHT-TSEEEEEEECCSHHHHHHHHHHC-----T-TSEEECSCHHHHHHHHTTTCSBCSSCCB
T ss_pred CceEEecccCccHHHHHHHHC-CCCceEEEEECCHHHHHHHHHhC-----C-CCcEeeccHHHHhHhhhccchhhhhhhh
Confidence 457999999999999999774 21135889999999999888773 1 244555554311
Q ss_pred cccCCCCeeEEEEcCCCCCCCCc
Q 020573 260 LKDVEGKLSGVVSNPPYIPSDDI 282 (324)
Q Consensus 260 l~~~~~~fDlIVsNPPYi~~~~~ 282 (324)
++ ..+.+|+|+.-||+-+.+..
T Consensus 924 lp-~~~~vDvl~GGpPCQ~FS~a 945 (1330)
T 3av4_A 924 LP-QKGDVEMLCGGPPCQGFSGM 945 (1330)
T ss_dssp CC-CTTTCSEEEECCCCTTTCSS
T ss_pred cc-ccCccceEEecCCCcccccc
Confidence 11 12479999999999876543
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=89.95 E-value=0.26 Score=46.27 Aligned_cols=76 Identities=17% Similarity=0.209 Sum_probs=48.1
Q ss_pred CCCCCeEEEEcCCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccccc----CCCCe
Q 020573 193 GLRDGFWVDLGTGS-GAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKD----VEGKL 267 (324)
Q Consensus 193 ~~~~~~VLDLGcGs-G~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~----~~~~f 267 (324)
..++.+||-.|+|. |.+++.+|+.. ...+|+++|.+++.++.+++ .|...-+.....|+.+.+.. ..+.+
T Consensus 180 ~~~g~~VlV~GaG~vG~~aiqlak~~-Ga~~Vi~~~~~~~~~~~a~~----lGa~~vi~~~~~~~~~~i~~~~~~~~gg~ 254 (370)
T 4ej6_A 180 IKAGSTVAILGGGVIGLLTVQLARLA-GATTVILSTRQATKRRLAEE----VGATATVDPSAGDVVEAIAGPVGLVPGGV 254 (370)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEECSCHHHHHHHHH----HTCSEEECTTSSCHHHHHHSTTSSSTTCE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHH----cCCCEEECCCCcCHHHHHHhhhhccCCCC
Confidence 34577899999875 88888899985 22399999999998887765 45432111112233222211 12479
Q ss_pred eEEEEc
Q 020573 268 SGVVSN 273 (324)
Q Consensus 268 DlIVsN 273 (324)
|+|+-+
T Consensus 255 Dvvid~ 260 (370)
T 4ej6_A 255 DVVIEC 260 (370)
T ss_dssp EEEEEC
T ss_pred CEEEEC
Confidence 998863
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=89.83 E-value=0.18 Score=47.34 Aligned_cols=72 Identities=13% Similarity=0.137 Sum_probs=47.1
Q ss_pred CCCCCeEEEEcCCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEE
Q 020573 193 GLRDGFWVDLGTGS-GAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVV 271 (324)
Q Consensus 193 ~~~~~~VLDLGcGs-G~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIV 271 (324)
..++.+||-+|+|. |.+++.+|+.. +++|+++|.+++.++.+++ .|.. .++..+-.+......+.+|+|+
T Consensus 192 ~~~g~~VlV~GaG~vG~~aiqlak~~--Ga~Vi~~~~~~~~~~~a~~----lGa~---~vi~~~~~~~~~~~~~g~Dvvi 262 (369)
T 1uuf_A 192 AGPGKKVGVVGIGGLGHMGIKLAHAM--GAHVVAFTTSEAKREAAKA----LGAD---EVVNSRNADEMAAHLKSFDFIL 262 (369)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESSGGGHHHHHH----HTCS---EEEETTCHHHHHTTTTCEEEEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH----cCCc---EEeccccHHHHHHhhcCCCEEE
Confidence 34577999999984 78888888875 4689999999988887764 4542 1221110011111225799998
Q ss_pred Ec
Q 020573 272 SN 273 (324)
Q Consensus 272 sN 273 (324)
-.
T Consensus 263 d~ 264 (369)
T 1uuf_A 263 NT 264 (369)
T ss_dssp EC
T ss_pred EC
Confidence 75
|
| >4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A* | Back alignment and structure |
|---|
Probab=89.40 E-value=0.8 Score=44.30 Aligned_cols=73 Identities=21% Similarity=0.297 Sum_probs=48.3
Q ss_pred eCCcccccchH-----HHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCC----CcEEEEEeCCHHHHHHH
Q 020573 166 EEGVFIPRPET-----ELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGS----KGSIIAVDLNPLAAAVA 236 (324)
Q Consensus 166 ~~~vliPrp~t-----e~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p----~~~V~gvDis~~al~~A 236 (324)
..|-|+--|+. |.+..++.+.+ .... ...|+|+|.|+|.++.-+.+.+.. ..+++.||+|+...+.-
T Consensus 107 ~~GDFiTAPeiS~~FGe~la~~~~~~~-~~~g---~~~ivE~GaG~GtLa~DiL~~l~~~~~~~~~y~iVE~Sp~Lr~~Q 182 (432)
T 4f3n_A 107 DGSDFVTAPELSPLFAQTLARPVAQAL-DASG---TRRVMEFGAGTGKLAAGLLTALAALGVELDEYAIVDLSGELRARQ 182 (432)
T ss_dssp ---CCSSCGGGHHHHHHHHHHHHHHHH-HHHT---CCEEEEESCTTSHHHHHHHHHHHHTTCCCSEEEEECTTSSSHHHH
T ss_pred CCCCccCchhhhHHHHHHHHHHHHHHH-HhcC---CCeEEEeCCCccHHHHHHHHHHHhcCCCCceEEEEEcCHHHHHHH
Confidence 34667765553 44555555544 2211 358999999999999888765411 24899999999888777
Q ss_pred HHHHHH
Q 020573 237 AFNAQR 242 (324)
Q Consensus 237 r~N~~~ 242 (324)
++++..
T Consensus 183 ~~~L~~ 188 (432)
T 4f3n_A 183 RETLGA 188 (432)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 777764
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=88.71 E-value=0.29 Score=41.26 Aligned_cols=43 Identities=14% Similarity=0.089 Sum_probs=31.4
Q ss_pred CCCCCeEEEEcC--CccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Q 020573 193 GLRDGFWVDLGT--GSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAA 237 (324)
Q Consensus 193 ~~~~~~VLDLGc--GsG~iai~la~~~~p~~~V~gvDis~~al~~Ar 237 (324)
..++++||..|+ |.|..++.+++.. +++|+++|.+++.++.++
T Consensus 36 ~~~g~~vlV~Ga~ggiG~~~~~~~~~~--G~~V~~~~~~~~~~~~~~ 80 (198)
T 1pqw_A 36 LSPGERVLIHSATGGVGMAAVSIAKMI--GARIYTTAGSDAKREMLS 80 (198)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEeeCCChHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHH
Confidence 345678999984 4566666666664 479999999998776654
|
| >1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=88.50 E-value=3.8 Score=36.07 Aligned_cols=82 Identities=15% Similarity=0.079 Sum_probs=57.0
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc---------cCC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVE 264 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~-p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~---------~~~ 264 (324)
.++++|=.| |+|.++..+++.+. .+.+|+++|.+++.++...+.++..+ .++.++.+|+.+.-. ...
T Consensus 30 ~~k~vlITG-asggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 106 (272)
T 1yb1_A 30 TGEIVLITG-AGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLG--AKVHTFVVDCSNREDIYSSAKKVKAEI 106 (272)
T ss_dssp TTCEEEEET-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEEcCHHHHHHHHHHHHhcC--CeEEEEEeeCCCHHHHHHHHHHHHHHC
Confidence 455677666 56778888777652 35789999999988777666666554 359999999876311 012
Q ss_pred CCeeEEEEcCCCCCC
Q 020573 265 GKLSGVVSNPPYIPS 279 (324)
Q Consensus 265 ~~fDlIVsNPPYi~~ 279 (324)
+++|++|.|--+...
T Consensus 107 g~iD~li~~Ag~~~~ 121 (272)
T 1yb1_A 107 GDVSILVNNAGVVYT 121 (272)
T ss_dssp CCCSEEEECCCCCCC
T ss_pred CCCcEEEECCCcCCC
Confidence 479999999766543
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A | Back alignment and structure |
|---|
Probab=88.38 E-value=1.6 Score=38.39 Aligned_cols=79 Identities=10% Similarity=0.034 Sum_probs=52.8
Q ss_pred CCCeEEEEcCCccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc---------cCC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVE 264 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~-~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~---------~~~ 264 (324)
.++++|=-|+ +|.++..+++.+ ..+.+|+.+|.+++.++...+.+ + .++.++..|..+.-. ...
T Consensus 7 ~gk~~lVTGa-s~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~---~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (255)
T 4eso_A 7 QGKKAIVIGG-THGMGLATVRRLVEGGAEVLLTGRNESNIARIREEF---G--PRVHALRSDIADLNEIAVLGAAAGQTL 80 (255)
T ss_dssp TTCEEEEETC-SSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH---G--GGEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECC-CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---C--CcceEEEccCCCHHHHHHHHHHHHHHh
Confidence 4567777664 566677766654 23579999999988776555443 2 358999999876311 112
Q ss_pred CCeeEEEEcCCCCCC
Q 020573 265 GKLSGVVSNPPYIPS 279 (324)
Q Consensus 265 ~~fDlIVsNPPYi~~ 279 (324)
+++|++|.|--+...
T Consensus 81 g~id~lv~nAg~~~~ 95 (255)
T 4eso_A 81 GAIDLLHINAGVSEL 95 (255)
T ss_dssp SSEEEEEECCCCCCC
T ss_pred CCCCEEEECCCCCCC
Confidence 589999999765543
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=87.70 E-value=0.29 Score=45.21 Aligned_cols=44 Identities=20% Similarity=0.270 Sum_probs=35.1
Q ss_pred CCCCCeEEEEcCC-ccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 020573 193 GLRDGFWVDLGTG-SGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF 238 (324)
Q Consensus 193 ~~~~~~VLDLGcG-sG~iai~la~~~~p~~~V~gvDis~~al~~Ar~ 238 (324)
..++.+||-.|+| .|..++.+++.. +++|+++|.+++.++.+++
T Consensus 162 ~~~g~~VlV~GaG~vG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~ 206 (339)
T 1rjw_A 162 AKPGEWVAIYGIGGLGHVAVQYAKAM--GLNVVAVDIGDEKLELAKE 206 (339)
T ss_dssp CCTTCEEEEECCSTTHHHHHHHHHHT--TCEEEEECSCHHHHHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH
Confidence 3456799999986 578888888875 4799999999988887753
|
| >3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=87.39 E-value=2.2 Score=38.36 Aligned_cols=81 Identities=11% Similarity=-0.102 Sum_probs=55.2
Q ss_pred CCeEEEEcCCccHHHHHHHHHhC----CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc---------c
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLG----SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------D 262 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~----p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~---------~ 262 (324)
++++|=-|+ +|.|+..+++.+- ...+|+.++.+.+.++.+.+.+.......++.++..|..+.-. .
T Consensus 33 ~k~~lVTGa-s~GIG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 111 (287)
T 3rku_A 33 KKTVLITGA-SAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFPNAKVHVAQLDITQAEKIKPFIENLPQ 111 (287)
T ss_dssp TCEEEEEST-TSHHHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCTTCEEEEEECCTTCGGGHHHHHHTSCG
T ss_pred CCEEEEecC-CChHHHHHHHHHHHcCCCCceEEEEECCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 456776664 5667777766541 1239999999999888777777654333468999999876321 1
Q ss_pred CCCCeeEEEEcCCCC
Q 020573 263 VEGKLSGVVSNPPYI 277 (324)
Q Consensus 263 ~~~~fDlIVsNPPYi 277 (324)
..++.|++|.|--+.
T Consensus 112 ~~g~iD~lVnnAG~~ 126 (287)
T 3rku_A 112 EFKDIDILVNNAGKA 126 (287)
T ss_dssp GGCSCCEEEECCCCC
T ss_pred hcCCCCEEEECCCcC
Confidence 125799999997643
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=86.57 E-value=2 Score=38.84 Aligned_cols=83 Identities=13% Similarity=0.023 Sum_probs=53.2
Q ss_pred CCCeEEEEcCCccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc---------cCC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVE 264 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~-~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~---------~~~ 264 (324)
+++.+|==|.++| |+.++|+.| ..+++|+.+|.+++.++.+.+. .+ .++..+++|..+.-. ...
T Consensus 28 ~gKvalVTGas~G-IG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~---~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 101 (273)
T 4fgs_A 28 NAKIAVITGATSG-IGLAAAKRFVAEGARVFITGRRKDVLDAAIAE---IG--GGAVGIQADSANLAELDRLYEKVKAEA 101 (273)
T ss_dssp TTCEEEEESCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH---HC--TTCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCcCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH---cC--CCeEEEEecCCCHHHHHHHHHHHHHHc
Confidence 4566666665554 666665544 1357999999999887765443 33 357888999875311 113
Q ss_pred CCeeEEEEcCCCCCCCCcc
Q 020573 265 GKLSGVVSNPPYIPSDDIS 283 (324)
Q Consensus 265 ~~fDlIVsNPPYi~~~~~~ 283 (324)
++.|++|.|--......+.
T Consensus 102 G~iDiLVNNAG~~~~~~~~ 120 (273)
T 4fgs_A 102 GRIDVLFVNAGGGSMLPLG 120 (273)
T ss_dssp SCEEEEEECCCCCCCCCTT
T ss_pred CCCCEEEECCCCCCCCChh
Confidence 6899999996554433333
|
| >1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=86.56 E-value=3.3 Score=36.54 Aligned_cols=82 Identities=13% Similarity=0.082 Sum_probs=57.3
Q ss_pred CCeEEEEcCCccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc--c-------CCC
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK--D-------VEG 265 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~-p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~--~-------~~~ 265 (324)
++++|=.| |+|.++..+++.+. .+.+|++++.++..++...+.++..+...++.++.+|+.+.-. . ..+
T Consensus 32 ~k~vlVTG-asggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g 110 (279)
T 1xg5_A 32 DRLALVTG-ASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQHS 110 (279)
T ss_dssp TCEEEEES-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHhCC
Confidence 45666665 66777877776542 3578999999998887776667666655568999999876311 0 014
Q ss_pred CeeEEEEcCCCCC
Q 020573 266 KLSGVVSNPPYIP 278 (324)
Q Consensus 266 ~fDlIVsNPPYi~ 278 (324)
.+|+||.|--+..
T Consensus 111 ~iD~vi~~Ag~~~ 123 (279)
T 1xg5_A 111 GVDICINNAGLAR 123 (279)
T ss_dssp CCSEEEECCCCCC
T ss_pred CCCEEEECCCCCC
Confidence 7999999976543
|
| >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=86.42 E-value=6 Score=34.00 Aligned_cols=81 Identities=12% Similarity=0.042 Sum_probs=56.7
Q ss_pred CCeEEEEcCCccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccc---------ccCCC
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKL---------KDVEG 265 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~-p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l---------~~~~~ 265 (324)
++++|=.| |+|.++..+++.+. .+.+|+.++.+++.++...+.++..+. ++.++..|..+.- ....+
T Consensus 5 ~k~vlITG-as~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~~ 81 (247)
T 3lyl_A 5 EKVALVTG-ASRGIGFEVAHALASKGATVVGTATSQASAEKFENSMKEKGF--KARGLVLNISDIESIQNFFAEIKAENL 81 (247)
T ss_dssp TCEEEESS-CSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHTTC
T ss_pred CCEEEEEC-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--ceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 44566555 56777777776542 357999999999888877777766653 5999999987631 11235
Q ss_pred CeeEEEEcCCCCCC
Q 020573 266 KLSGVVSNPPYIPS 279 (324)
Q Consensus 266 ~fDlIVsNPPYi~~ 279 (324)
++|++|.|.-+...
T Consensus 82 ~id~li~~Ag~~~~ 95 (247)
T 3lyl_A 82 AIDILVNNAGITRD 95 (247)
T ss_dssp CCSEEEECCCCCCC
T ss_pred CCCEEEECCCCCCC
Confidence 79999999766543
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=86.32 E-value=3.2 Score=37.00 Aligned_cols=89 Identities=12% Similarity=0.022 Sum_probs=60.3
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccc---------ccCC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKL---------KDVE 264 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~-p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l---------~~~~ 264 (324)
+++.+|==| |++.|+.++|+.|. .+++|+.+|.+++.++.+.+.+...+. ++.+++.|..+.- ....
T Consensus 8 ~gKvalVTG-as~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~l~~~g~--~~~~~~~Dv~~~~~v~~~~~~~~~~~ 84 (255)
T 4g81_D 8 TGKTALVTG-SARGLGFAYAEGLAAAGARVILNDIRATLLAESVDTLTRKGY--DAHGVAFDVTDELAIEAAFSKLDAEG 84 (255)
T ss_dssp TTCEEEETT-CSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTTC--CEEECCCCTTCHHHHHHHHHHHHHTT
T ss_pred CCCEEEEeC-CCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC--cEEEEEeeCCCHHHHHHHHHHHHHHC
Confidence 455555555 55566666666542 357999999999998888877777763 5889999987631 1124
Q ss_pred CCeeEEEEcCCCCCCCCcccch
Q 020573 265 GKLSGVVSNPPYIPSDDISGLQ 286 (324)
Q Consensus 265 ~~fDlIVsNPPYi~~~~~~~l~ 286 (324)
++.|++|.|--......+..+.
T Consensus 85 G~iDiLVNNAG~~~~~~~~~~~ 106 (255)
T 4g81_D 85 IHVDILINNAGIQYRKPMVELE 106 (255)
T ss_dssp CCCCEEEECCCCCCCCCGGGCC
T ss_pred CCCcEEEECCCCCCCCChhhCC
Confidence 7899999997655444443333
|
| >4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A | Back alignment and structure |
|---|
Probab=86.00 E-value=1.2 Score=39.22 Aligned_cols=84 Identities=15% Similarity=0.155 Sum_probs=55.9
Q ss_pred CCCCeEEEEcCCcc-HHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc---------c
Q 020573 194 LRDGFWVDLGTGSG-AIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------D 262 (324)
Q Consensus 194 ~~~~~VLDLGcGsG-~iai~la~~~-~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~---------~ 262 (324)
..++++|=-|.+++ .|+.++|+.+ ..+++|+.+|.+++.++.+.+-++..+- .++.+++.|..+.-. .
T Consensus 4 l~gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~~~~~~~~~~~-~~~~~~~~Dv~~~~~v~~~~~~~~~ 82 (256)
T 4fs3_A 4 LENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKERSRKELEKLLEQLNQ-PEAHLYQIDVQSDEEVINGFEQIGK 82 (256)
T ss_dssp CTTCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHGGGTC-SSCEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-CcEEEEEccCCCHHHHHHHHHHHHH
Confidence 35677888775442 3444444433 1358999999999888877777766543 358899999875311 1
Q ss_pred CCCCeeEEEEcCCCCC
Q 020573 263 VEGKLSGVVSNPPYIP 278 (324)
Q Consensus 263 ~~~~fDlIVsNPPYi~ 278 (324)
..++.|++|.|--+..
T Consensus 83 ~~G~iD~lvnnAg~~~ 98 (256)
T 4fs3_A 83 DVGNIDGVYHSIAFAN 98 (256)
T ss_dssp HHCCCSEEEECCCCCC
T ss_pred HhCCCCEEEecccccc
Confidence 1368999999976653
|
| >1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A | Back alignment and structure |
|---|
Probab=85.96 E-value=2 Score=39.87 Aligned_cols=61 Identities=11% Similarity=0.071 Sum_probs=49.7
Q ss_pred CCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcC--------------------CCCcEEEEEcc
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYG--------------------LQDIIEIRQGS 255 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~g--------------------l~~rv~~~~gD 255 (324)
...|+.||||....+..+.... ++.+++-||. |+.++.-++.+...+ ..++.+++-.|
T Consensus 98 ~~qVV~LGaGlDTr~~RL~~~~-~~~~~~EvD~-P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~D 175 (334)
T 1rjd_A 98 KVQVVNLGCGSDLRMLPLLQMF-PHLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACD 175 (334)
T ss_dssp SEEEEEETCTTCCTHHHHHHHC-TTEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECC
T ss_pred CcEEEEeCCCCccHHHHhcCcC-CCCEEEECCC-HHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEecC
Confidence 4689999999999999998864 5788999998 888888888777652 13578999999
Q ss_pred ccc
Q 020573 256 WFG 258 (324)
Q Consensus 256 ~~~ 258 (324)
+.+
T Consensus 176 L~d 178 (334)
T 1rjd_A 176 LND 178 (334)
T ss_dssp TTC
T ss_pred CCC
Confidence 876
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=85.89 E-value=2.8 Score=36.35 Aligned_cols=79 Identities=18% Similarity=0.135 Sum_probs=55.6
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc---------cCC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVE 264 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~-p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~---------~~~ 264 (324)
.++++|=-| |+|.++..+++.+. .+.+|+.+|.+++.++.+.+.++..+ .++.++.+|+.+.-. ...
T Consensus 8 ~~k~vlITG-as~giG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 84 (253)
T 3qiv_A 8 ENKVGIVTG-SGGGIGQAYAEALAREGAAVVVADINAEAAEAVAKQIVADG--GTAISVAVDVSDPESAKAMADRTLAEF 84 (253)
T ss_dssp TTCEEEEET-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CEEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEC-CCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 355677666 45667777776542 35789999999998887777776654 468999999876311 012
Q ss_pred CCeeEEEEcCCC
Q 020573 265 GKLSGVVSNPPY 276 (324)
Q Consensus 265 ~~fDlIVsNPPY 276 (324)
++.|++|.|.-+
T Consensus 85 g~id~li~~Ag~ 96 (253)
T 3qiv_A 85 GGIDYLVNNAAI 96 (253)
T ss_dssp SCCCEEEECCCC
T ss_pred CCCCEEEECCCc
Confidence 479999999755
|
| >3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber} | Back alignment and structure |
|---|
Probab=85.64 E-value=3.5 Score=36.61 Aligned_cols=81 Identities=12% Similarity=0.034 Sum_probs=55.2
Q ss_pred CCeEEEEcCCccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc---------cCCC
Q 020573 196 DGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVEG 265 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~-~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~---------~~~~ 265 (324)
++++|=-| |+|.|+..+++.+ ..+.+|+.++.+++.++.+.+.++..+ .++.++..|..+.-. ...+
T Consensus 24 ~k~~lVTG-as~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 100 (279)
T 3sju_A 24 PQTAFVTG-VSSGIGLAVARTLAARGIAVYGCARDAKNVSAAVDGLRAAG--HDVDGSSCDVTSTDEVHAAVAAAVERFG 100 (279)
T ss_dssp -CEEEEES-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTT--CCEEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred CCEEEEeC-CCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 45677666 5566776666654 135799999999988877776666554 359999999876311 0125
Q ss_pred CeeEEEEcCCCCCC
Q 020573 266 KLSGVVSNPPYIPS 279 (324)
Q Consensus 266 ~fDlIVsNPPYi~~ 279 (324)
+.|++|.|--+...
T Consensus 101 ~id~lv~nAg~~~~ 114 (279)
T 3sju_A 101 PIGILVNSAGRNGG 114 (279)
T ss_dssp SCCEEEECCCCCCC
T ss_pred CCcEEEECCCCCCC
Confidence 79999999765543
|
| >3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=85.53 E-value=2.5 Score=37.52 Aligned_cols=80 Identities=16% Similarity=0.061 Sum_probs=55.6
Q ss_pred CCeEEEEcCCccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccc-c--c-------cCC
Q 020573 196 DGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGK-L--K-------DVE 264 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~-~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~-l--~-------~~~ 264 (324)
++++|=-| |+|.|+..+++.+ ..+.+|+.++.+....+.+.+.++..+- .++.++..|+.+. - . ...
T Consensus 12 ~k~vlITG-as~GIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~Dl~~~~~~v~~~~~~~~~~~ 89 (311)
T 3o26_A 12 RRCAVVTG-GNKGIGFEICKQLSSNGIMVVLTCRDVTKGHEAVEKLKNSNH-ENVVFHQLDVTDPIATMSSLADFIKTHF 89 (311)
T ss_dssp CCEEEESS-CSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTC-CSEEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred CcEEEEec-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-CceEEEEccCCCcHHHHHHHHHHHHHhC
Confidence 44566555 5567777777665 2357999999999888777776665543 3699999998775 1 0 012
Q ss_pred CCeeEEEEcCCCC
Q 020573 265 GKLSGVVSNPPYI 277 (324)
Q Consensus 265 ~~fDlIVsNPPYi 277 (324)
+++|++|.|--..
T Consensus 90 g~iD~lv~nAg~~ 102 (311)
T 3o26_A 90 GKLDILVNNAGVA 102 (311)
T ss_dssp SSCCEEEECCCCC
T ss_pred CCCCEEEECCccc
Confidence 5799999997654
|
| >1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A* | Back alignment and structure |
|---|
Probab=85.41 E-value=2.1 Score=37.19 Aligned_cols=79 Identities=19% Similarity=0.090 Sum_probs=54.9
Q ss_pred CCeEEEEcCCccHHHHHHHHHhC--CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc--c-------CC
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLG--SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK--D-------VE 264 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~--p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~--~-------~~ 264 (324)
++++|=.| |+|.++..+++.+. .+.+|+.++.++..++.+.+.+...+ .++.++.+|+.+.-. . ..
T Consensus 4 ~k~vlITG-asggIG~~~a~~L~~~~g~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 80 (276)
T 1wma_A 4 IHVALVTG-GNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEG--LSPRFHQLDIDDLQSIRALRDFLRKEY 80 (276)
T ss_dssp CCEEEESS-CSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTT--CCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCEEEEeC-CCcHHHHHHHHHHHHhcCCeEEEEeCChHHHHHHHHHHHhcC--CeeEEEECCCCCHHHHHHHHHHHHHhc
Confidence 34566444 77888888887652 35799999999887777766666554 358999999876311 0 01
Q ss_pred CCeeEEEEcCCCC
Q 020573 265 GKLSGVVSNPPYI 277 (324)
Q Consensus 265 ~~fDlIVsNPPYi 277 (324)
+++|+||.|--..
T Consensus 81 g~id~li~~Ag~~ 93 (276)
T 1wma_A 81 GGLDVLVNNAGIA 93 (276)
T ss_dssp SSEEEEEECCCCC
T ss_pred CCCCEEEECCccc
Confidence 4799999986543
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=85.37 E-value=0.42 Score=44.92 Aligned_cols=43 Identities=26% Similarity=0.301 Sum_probs=34.6
Q ss_pred CCCCCeEEEEcCC-ccHHHHHHHHHhCCC-cEEEEEeCCHHHHHHHH
Q 020573 193 GLRDGFWVDLGTG-SGAIAIGIARVLGSK-GSIIAVDLNPLAAAVAA 237 (324)
Q Consensus 193 ~~~~~~VLDLGcG-sG~iai~la~~~~p~-~~V~gvDis~~al~~Ar 237 (324)
..++.+||-.|+| .|.+++.+|+.. + .+|+++|.+++.++.++
T Consensus 193 ~~~g~~VlV~GaG~vG~~aiqlak~~--Ga~~Vi~~~~~~~~~~~~~ 237 (380)
T 1vj0_A 193 SFAGKTVVIQGAGPLGLFGVVIARSL--GAENVIVIAGSPNRLKLAE 237 (380)
T ss_dssp CCBTCEEEEECCSHHHHHHHHHHHHT--TBSEEEEEESCHHHHHHHH
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHc--CCceEEEEcCCHHHHHHHH
Confidence 3457799999976 477888888875 4 59999999998888776
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=85.11 E-value=2.2 Score=31.95 Aligned_cols=72 Identities=25% Similarity=0.227 Sum_probs=47.9
Q ss_pred CCeEEEEcCCccHHHHHHHHHhC-CC-cEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccc--cccCCCCeeEEE
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLG-SK-GSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGK--LKDVEGKLSGVV 271 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~-p~-~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~--l~~~~~~fDlIV 271 (324)
..+|+=+|+ |.++..+++.+. .+ .+|+++|.+++.++.+. ...+.+...|..+. +...-..+|+||
T Consensus 5 ~~~v~I~G~--G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~--------~~~~~~~~~d~~~~~~~~~~~~~~d~vi 74 (118)
T 3ic5_A 5 RWNICVVGA--GKIGQMIAALLKTSSNYSVTVADHDLAALAVLN--------RMGVATKQVDAKDEAGLAKALGGFDAVI 74 (118)
T ss_dssp CEEEEEECC--SHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHH--------TTTCEEEECCTTCHHHHHHHTTTCSEEE
T ss_pred cCeEEEECC--CHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHH--------hCCCcEEEecCCCHHHHHHHHcCCCEEE
Confidence 347888887 777777665542 23 68999999987766544 12367788887652 111124789999
Q ss_pred EcCCCC
Q 020573 272 SNPPYI 277 (324)
Q Consensus 272 sNPPYi 277 (324)
.+-|+.
T Consensus 75 ~~~~~~ 80 (118)
T 3ic5_A 75 SAAPFF 80 (118)
T ss_dssp ECSCGG
T ss_pred ECCCch
Confidence 988764
|
| >1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=84.99 E-value=5.5 Score=35.07 Aligned_cols=80 Identities=18% Similarity=0.121 Sum_probs=54.6
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc----------cC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK----------DV 263 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~-p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~----------~~ 263 (324)
.++++|=-| |+|.++..+++.+. .+.+|+.++.+++.++.+.+.++..+ .++.++.+|..+.-. ..
T Consensus 20 ~~k~vlVTG-as~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 96 (273)
T 1ae1_A 20 KGTTALVTG-GSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKG--LNVEGSVCDLLSRTERDKLMQTVAHVF 96 (273)
T ss_dssp TTCEEEEES-CSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCEEEEEC-CcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CceEEEECCCCCHHHHHHHHHHHHHHc
Confidence 355677666 56777777776542 35789999999987776665555544 358999999875311 01
Q ss_pred CCCeeEEEEcCCCC
Q 020573 264 EGKLSGVVSNPPYI 277 (324)
Q Consensus 264 ~~~fDlIVsNPPYi 277 (324)
.+++|++|.|--+.
T Consensus 97 ~g~id~lv~nAg~~ 110 (273)
T 1ae1_A 97 DGKLNILVNNAGVV 110 (273)
T ss_dssp TSCCCEEEECCCCC
T ss_pred CCCCcEEEECCCCC
Confidence 16899999997654
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=84.90 E-value=2.8 Score=37.36 Aligned_cols=78 Identities=15% Similarity=0.131 Sum_probs=55.4
Q ss_pred CCCeEEEEcCCccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc---------cCC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVE 264 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~-~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~---------~~~ 264 (324)
+++.+|==|.++ .|+.++|+.| ..+++|+.+|.+++.++.+.+.++..|. ++.+++.|..+.-. ...
T Consensus 6 ~gKvalVTGas~-GIG~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~~i~~~g~--~~~~~~~Dvt~~~~v~~~~~~~~~~~ 82 (254)
T 4fn4_A 6 KNKVVIVTGAGS-GIGRAIAKKFALNDSIVVAVELLEDRLNQIVQELRGMGK--EVLGVKADVSKKKDVEEFVRRTFETY 82 (254)
T ss_dssp TTCEEEEETTTS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCC-HHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCC--cEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 455666666554 4566655544 1357999999999999888888877763 59999999876311 113
Q ss_pred CCeeEEEEcCC
Q 020573 265 GKLSGVVSNPP 275 (324)
Q Consensus 265 ~~fDlIVsNPP 275 (324)
++.|++|.|--
T Consensus 83 G~iDiLVNNAG 93 (254)
T 4fn4_A 83 SRIDVLCNNAG 93 (254)
T ss_dssp SCCCEEEECCC
T ss_pred CCCCEEEECCc
Confidence 68999999964
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=84.84 E-value=2.3 Score=36.40 Aligned_cols=75 Identities=13% Similarity=0.003 Sum_probs=51.2
Q ss_pred CCCeEEEEcCCccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcE-EEEEcccccccccCCCCeeEEEE
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDII-EIRQGSWFGKLKDVEGKLSGVVS 272 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~-~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv-~~~~gD~~~~l~~~~~~fDlIVs 272 (324)
.+.+||=.| |+|.++..+++.+ ..+.+|++++.++..++.... . ++ +++.+|+.+.+...-+..|+||.
T Consensus 20 ~~~~ilVtG-atG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~----~----~~~~~~~~Dl~~~~~~~~~~~D~vi~ 90 (236)
T 3e8x_A 20 QGMRVLVVG-ANGKVARYLLSELKNKGHEPVAMVRNEEQGPELRE----R----GASDIVVANLEEDFSHAFASIDAVVF 90 (236)
T ss_dssp -CCEEEEET-TTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH----T----TCSEEEECCTTSCCGGGGTTCSEEEE
T ss_pred CCCeEEEEC-CCChHHHHHHHHHHhCCCeEEEEECChHHHHHHHh----C----CCceEEEcccHHHHHHHHcCCCEEEE
Confidence 456777665 6788888887765 235799999999876543221 1 37 89999987444333357999999
Q ss_pred cCCCCC
Q 020573 273 NPPYIP 278 (324)
Q Consensus 273 NPPYi~ 278 (324)
|-....
T Consensus 91 ~ag~~~ 96 (236)
T 3e8x_A 91 AAGSGP 96 (236)
T ss_dssp CCCCCT
T ss_pred CCCCCC
Confidence 976554
|
| >2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A* | Back alignment and structure |
|---|
Probab=84.84 E-value=5.8 Score=34.35 Aligned_cols=80 Identities=14% Similarity=0.069 Sum_probs=54.6
Q ss_pred CCeEEEEcCCccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc---------cCCC
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVEG 265 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~-p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~---------~~~~ 265 (324)
++++|=.| |+|.++..+++.+. .+.+|+.++.+++.++...+.+...+ .++.++..|+.+.-. ...+
T Consensus 7 ~k~~lVTG-as~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~~~~~~~~~~~~~~~~~g 83 (247)
T 2jah_A 7 GKVALITG-ASSGIGEATARALAAEGAAVAIAARRVEKLRALGDELTAAG--AKVHVLELDVADRQGVDAAVASTVEALG 83 (247)
T ss_dssp TCEEEEES-CSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCEEEEEC-CCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 45677666 55677777776542 35789999999988776666665544 358999999876311 0114
Q ss_pred CeeEEEEcCCCCC
Q 020573 266 KLSGVVSNPPYIP 278 (324)
Q Consensus 266 ~fDlIVsNPPYi~ 278 (324)
++|++|.|--+..
T Consensus 84 ~id~lv~nAg~~~ 96 (247)
T 2jah_A 84 GLDILVNNAGIML 96 (247)
T ss_dssp CCSEEEECCCCCC
T ss_pred CCCEEEECCCCCC
Confidence 7999999976543
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=84.73 E-value=1.4 Score=41.51 Aligned_cols=46 Identities=26% Similarity=0.237 Sum_probs=36.9
Q ss_pred CCCCCCeEEEEcCCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 020573 192 DGLRDGFWVDLGTGS-GAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF 238 (324)
Q Consensus 192 ~~~~~~~VLDLGcGs-G~iai~la~~~~p~~~V~gvDis~~al~~Ar~ 238 (324)
...++.+||-+|+|. |.+++.+|+..+ ..+|+++|.+++.++.+++
T Consensus 182 ~~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~~~~a~~ 228 (398)
T 2dph_A 182 GVKPGSHVYIAGAGPVGRCAAAGARLLG-AACVIVGDQNPERLKLLSD 228 (398)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHHT-CSEEEEEESCHHHHHHHHT
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHH
Confidence 344678999999986 889999999862 2399999999998887653
|
| >4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A | Back alignment and structure |
|---|
Probab=84.13 E-value=6.6 Score=34.21 Aligned_cols=79 Identities=16% Similarity=0.075 Sum_probs=52.5
Q ss_pred CCCeEEEEcCCccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc---------cCC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVE 264 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~-~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~---------~~~ 264 (324)
.++++|=-| |+|.++..+++++ ..+.+|+.+|.+.+.++...+.+ + .++.++.+|..+.-. ...
T Consensus 7 ~~k~vlVTG-as~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~---~--~~~~~~~~D~~~~~~v~~~~~~~~~~~ 80 (259)
T 4e6p_A 7 EGKSALITG-SARGIGRAFAEAYVREGATVAIADIDIERARQAAAEI---G--PAAYAVQMDVTRQDSIDAAIAATVEHA 80 (259)
T ss_dssp TTCEEEEET-CSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH---C--TTEEEEECCTTCHHHHHHHHHHHHHHS
T ss_pred CCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---C--CCceEEEeeCCCHHHHHHHHHHHHHHc
Confidence 355677666 5567777776654 23578999999988765544433 2 358999999876311 112
Q ss_pred CCeeEEEEcCCCCCC
Q 020573 265 GKLSGVVSNPPYIPS 279 (324)
Q Consensus 265 ~~fDlIVsNPPYi~~ 279 (324)
+++|++|.|--+...
T Consensus 81 g~id~lv~~Ag~~~~ 95 (259)
T 4e6p_A 81 GGLDILVNNAALFDL 95 (259)
T ss_dssp SSCCEEEECCCCCCC
T ss_pred CCCCEEEECCCcCCC
Confidence 589999999766543
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=84.07 E-value=4.2 Score=35.51 Aligned_cols=83 Identities=17% Similarity=0.097 Sum_probs=52.7
Q ss_pred CCCeEEEEcCCcc-HHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc---------cC
Q 020573 195 RDGFWVDLGTGSG-AIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DV 263 (324)
Q Consensus 195 ~~~~VLDLGcGsG-~iai~la~~~-~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~---------~~ 263 (324)
.++++|=.|++.| .++..+++.+ ..+.+|+.++.+....+.+++..+..+- .++.++..|+.+.-. ..
T Consensus 6 ~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~v~~~~~~~~~~ 84 (266)
T 3oig_A 6 EGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGERLEKSVHELAGTLDR-NDSIILPCDVTNDAEIETCFASIKEQ 84 (266)
T ss_dssp TTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHTSSS-CCCEEEECCCSSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCchHHHHHHHHHHHhcCC-CCceEEeCCCCCHHHHHHHHHHHHHH
Confidence 4567787776532 2555555443 1357899999987666655555554442 259999999876421 01
Q ss_pred CCCeeEEEEcCCCCC
Q 020573 264 EGKLSGVVSNPPYIP 278 (324)
Q Consensus 264 ~~~fDlIVsNPPYi~ 278 (324)
.+++|++|.|.-+..
T Consensus 85 ~g~id~li~~Ag~~~ 99 (266)
T 3oig_A 85 VGVIHGIAHCIAFAN 99 (266)
T ss_dssp HSCCCEEEECCCCCC
T ss_pred hCCeeEEEEcccccc
Confidence 247899999976653
|
| >3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans} | Back alignment and structure |
|---|
Probab=83.61 E-value=7.3 Score=33.53 Aligned_cols=80 Identities=16% Similarity=0.159 Sum_probs=54.4
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc--c-------CC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK--D-------VE 264 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~-p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~--~-------~~ 264 (324)
.++++|=.| |+|.++..+++.+. .+.+|+++|.++..++...+.++..+ .++.++.+|+.+.-. . ..
T Consensus 12 ~~k~vlItG-asggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 88 (260)
T 3awd_A 12 DNRVAIVTG-GAQNIGLACVTALAEAGARVIIADLDEAMATKAVEDLRMEG--HDVSSVVMDVTNTESVQNAVRSVHEQE 88 (260)
T ss_dssp TTCEEEEET-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CceEEEEecCCCHHHHHHHHHHHHHHc
Confidence 345677666 56778888777652 35799999999887766655565544 359999999876311 0 01
Q ss_pred CCeeEEEEcCCCC
Q 020573 265 GKLSGVVSNPPYI 277 (324)
Q Consensus 265 ~~fDlIVsNPPYi 277 (324)
+++|++|.|--+.
T Consensus 89 ~~id~vi~~Ag~~ 101 (260)
T 3awd_A 89 GRVDILVACAGIC 101 (260)
T ss_dssp SCCCEEEECCCCC
T ss_pred CCCCEEEECCCCC
Confidence 4789999996543
|
| >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} | Back alignment and structure |
|---|
Probab=83.50 E-value=7.8 Score=35.14 Aligned_cols=83 Identities=14% Similarity=0.017 Sum_probs=58.2
Q ss_pred CCCeEEEEcCCccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc---------cCC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVE 264 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~-~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~---------~~~ 264 (324)
.+++||=-|++ |.|+..+++.+ ..+.+|++++.+++.++.+.+.+...+...++.++..|+.+.-. ...
T Consensus 7 ~~k~vlVTGas-~gIG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 85 (319)
T 3ioy_A 7 AGRTAFVTGGA-NGVGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAADEVEARF 85 (319)
T ss_dssp TTCEEEEETTT-STHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCEEEEcCCc-hHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHHHHHhC
Confidence 35567766654 66676666654 23579999999999888887777766644469999999876311 112
Q ss_pred CCeeEEEEcCCCCC
Q 020573 265 GKLSGVVSNPPYIP 278 (324)
Q Consensus 265 ~~fDlIVsNPPYi~ 278 (324)
+.+|++|.|--+..
T Consensus 86 g~id~lv~nAg~~~ 99 (319)
T 3ioy_A 86 GPVSILCNNAGVNL 99 (319)
T ss_dssp CCEEEEEECCCCCC
T ss_pred CCCCEEEECCCcCC
Confidence 57999999976543
|
| >3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=83.33 E-value=7.3 Score=34.12 Aligned_cols=83 Identities=10% Similarity=0.001 Sum_probs=56.8
Q ss_pred CCCeEEEEcCCccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc-----cCCCCee
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK-----DVEGKLS 268 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~-~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~-----~~~~~fD 268 (324)
.++++|=-| |+|.++..+++++ ..+++|+.+|.+++.++.+.+.+...+...++.++..|..+.-. ...++.|
T Consensus 9 ~~k~~lVTG-as~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~id 87 (267)
T 3t4x_A 9 KGKTALVTG-STAGIGKAIATSLVAEGANVLINGRREENVNETIKEIRAQYPDAILQPVVADLGTEQGCQDVIEKYPKVD 87 (267)
T ss_dssp TTCEEEETT-CSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCTTSHHHHHHHHHHCCCCS
T ss_pred CCCEEEEeC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCCCCHHHHHHHHHhcCCCC
Confidence 345666555 5567777777654 23579999999998887777777665544568889999865310 1125799
Q ss_pred EEEEcCCCCC
Q 020573 269 GVVSNPPYIP 278 (324)
Q Consensus 269 lIVsNPPYi~ 278 (324)
++|.|--...
T Consensus 88 ~lv~nAg~~~ 97 (267)
T 3t4x_A 88 ILINNLGIFE 97 (267)
T ss_dssp EEEECCCCCC
T ss_pred EEEECCCCCC
Confidence 9999976543
|
| >1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ... | Back alignment and structure |
|---|
Probab=83.27 E-value=2.9 Score=37.15 Aligned_cols=76 Identities=13% Similarity=0.071 Sum_probs=52.3
Q ss_pred CCeEEEEcCCccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccc--cc-------CCC
Q 020573 196 DGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKL--KD-------VEG 265 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~-~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l--~~-------~~~ 265 (324)
++++|=.| |+|.++..+++.+ ..+.+|++++.+++.++...+.+...+- .++.++.+|..+.- .. ..+
T Consensus 28 ~k~vlITG-asggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~d~~~v~~~~~~~~~~~g 105 (286)
T 1xu9_A 28 GKKVIVTG-ASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGA-ASAHYIAGTMEDMTFAEQFVAQAGKLMG 105 (286)
T ss_dssp TCEEEESS-CSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTC-SEEEEEECCTTCHHHHHHHHHHHHHHHT
T ss_pred CCEEEEeC-CCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhCC-CceEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence 45677555 5677887777654 2357899999999888776666655543 25899999987631 10 114
Q ss_pred CeeEEEEc
Q 020573 266 KLSGVVSN 273 (324)
Q Consensus 266 ~fDlIVsN 273 (324)
.+|++|.|
T Consensus 106 ~iD~li~n 113 (286)
T 1xu9_A 106 GLDMLILN 113 (286)
T ss_dssp SCSEEEEC
T ss_pred CCCEEEEC
Confidence 79999998
|
| >3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=83.07 E-value=4.8 Score=35.43 Aligned_cols=80 Identities=26% Similarity=0.188 Sum_probs=54.0
Q ss_pred CCCeEEEEcCCccHHHHHHHHHh-CCCcEEEEEeCC------------HHHHHHHHHHHHHcCCCCcEEEEEcccccccc
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLN------------PLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK 261 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~-~p~~~V~gvDis------------~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~ 261 (324)
.++++|=-| |+|.|+..+++.+ ..+.+|+.+|.+ .+.++...+.+...+ .++.++..|..+.-.
T Consensus 12 ~gk~vlVTG-as~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~ 88 (278)
T 3sx2_A 12 TGKVAFITG-AARGQGRAHAVRLAADGADIIAVDLCDQIASVPYPLATPEELAATVKLVEDIG--SRIVARQADVRDRES 88 (278)
T ss_dssp TTCEEEEES-TTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHT--CCEEEEECCTTCHHH
T ss_pred CCCEEEEEC-CCChHHHHHHHHHHHCCCeEEEEecccccccccccccchHHHHHHHHHHHhcC--CeEEEEeCCCCCHHH
Confidence 456677666 5566676666654 135789999987 777766666666555 359999999876311
Q ss_pred ---------cCCCCeeEEEEcCCCC
Q 020573 262 ---------DVEGKLSGVVSNPPYI 277 (324)
Q Consensus 262 ---------~~~~~fDlIVsNPPYi 277 (324)
...++.|++|.|--+.
T Consensus 89 v~~~~~~~~~~~g~id~lv~nAg~~ 113 (278)
T 3sx2_A 89 LSAALQAGLDELGRLDIVVANAGIA 113 (278)
T ss_dssp HHHHHHHHHHHHCCCCEEEECCCCC
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCC
Confidence 0125799999997654
|
| >3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=81.85 E-value=6.5 Score=34.40 Aligned_cols=83 Identities=17% Similarity=0.182 Sum_probs=56.3
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc---------cCC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVE 264 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~-p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~---------~~~ 264 (324)
.++++|=-| |+|.++..+++.+. .+.+|+.+|.+++.++.+.+.++..+- .++.+++.|..+.-. ...
T Consensus 9 ~~k~vlVTG-as~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 86 (262)
T 3pk0_A 9 QGRSVVVTG-GTKGIGRGIATVFARAGANVAVAGRSTADIDACVADLDQLGS-GKVIGVQTDVSDRAQCDALAGRAVEEF 86 (262)
T ss_dssp TTCEEEETT-CSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTSS-SCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhCC-CcEEEEEcCCCCHHHHHHHHHHHHHHh
Confidence 345566555 56777777776542 357999999999888777776665542 359999999876311 012
Q ss_pred CCeeEEEEcCCCCCC
Q 020573 265 GKLSGVVSNPPYIPS 279 (324)
Q Consensus 265 ~~fDlIVsNPPYi~~ 279 (324)
++.|++|.|--+...
T Consensus 87 g~id~lvnnAg~~~~ 101 (262)
T 3pk0_A 87 GGIDVVCANAGVFPD 101 (262)
T ss_dssp SCCSEEEECCCCCCC
T ss_pred CCCCEEEECCCCCCC
Confidence 479999999765543
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=81.80 E-value=2.9 Score=38.75 Aligned_cols=45 Identities=31% Similarity=0.330 Sum_probs=36.4
Q ss_pred CCCCCeEEEEcCCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 020573 193 GLRDGFWVDLGTGS-GAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF 238 (324)
Q Consensus 193 ~~~~~~VLDLGcGs-G~iai~la~~~~p~~~V~gvDis~~al~~Ar~ 238 (324)
..++.+||-+|+|. |.+++.+|+..+ ..+|+++|.+++.++.+++
T Consensus 188 ~~~g~~VlV~GaG~vG~~a~qlak~~G-a~~Vi~~~~~~~~~~~a~~ 233 (371)
T 1f8f_A 188 VTPASSFVTWGAGAVGLSALLAAKVCG-ASIIIAVDIVESRLELAKQ 233 (371)
T ss_dssp CCTTCEEEEESCSHHHHHHHHHHHHHT-CSEEEEEESCHHHHHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEECCCHHHHHHHHH
Confidence 44678999999986 888899999862 2379999999998888764
|
| >3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A* | Back alignment and structure |
|---|
Probab=81.66 E-value=12 Score=33.44 Aligned_cols=80 Identities=16% Similarity=0.067 Sum_probs=52.8
Q ss_pred CCCeEEEEcCCcc-HHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc---------cC
Q 020573 195 RDGFWVDLGTGSG-AIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DV 263 (324)
Q Consensus 195 ~~~~VLDLGcGsG-~iai~la~~~-~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~---------~~ 263 (324)
.++++|=-|.++| .|+..+++.+ ..+++|+.++.++...+.+++..+..+ ++.++..|+.+.-. ..
T Consensus 30 ~gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~Dv~d~~~v~~~~~~~~~~ 106 (293)
T 3grk_A 30 QGKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQGDALKKRVEPLAEELG---AFVAGHCDVADAASIDAVFETLEKK 106 (293)
T ss_dssp TTCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHHHHHHT---CEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC---CceEEECCCCCHHHHHHHHHHHHHh
Confidence 4667888887644 3555555443 135789999999776666665555544 48899999876311 11
Q ss_pred CCCeeEEEEcCCCC
Q 020573 264 EGKLSGVVSNPPYI 277 (324)
Q Consensus 264 ~~~fDlIVsNPPYi 277 (324)
.++.|++|.|--+.
T Consensus 107 ~g~iD~lVnnAG~~ 120 (293)
T 3grk_A 107 WGKLDFLVHAIGFS 120 (293)
T ss_dssp TSCCSEEEECCCCC
T ss_pred cCCCCEEEECCccC
Confidence 25899999997654
|
| >1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=81.57 E-value=9.3 Score=33.52 Aligned_cols=81 Identities=25% Similarity=0.206 Sum_probs=53.7
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHH-HHcCCCCcEEEEEcccccccc---------cC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNA-QRYGLQDIIEIRQGSWFGKLK---------DV 263 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~-p~~~V~gvDis~~al~~Ar~N~-~~~gl~~rv~~~~gD~~~~l~---------~~ 263 (324)
.++++|=.| |+|.++..+++.+. .+.+|+.++.+++.++.+.+.+ +..+ .++.++.+|+.+.-. ..
T Consensus 20 ~~k~~lVTG-as~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~~ 96 (267)
T 1vl8_A 20 RGRVALVTG-GSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYG--VETMAFRCDVSNYEEVKKLLEAVKEK 96 (267)
T ss_dssp TTCEEEEET-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHC--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEEC-CCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 455666666 56777777776542 3578999999988776655555 3334 358889999876311 01
Q ss_pred CCCeeEEEEcCCCCC
Q 020573 264 EGKLSGVVSNPPYIP 278 (324)
Q Consensus 264 ~~~fDlIVsNPPYi~ 278 (324)
.+++|++|.|--+..
T Consensus 97 ~g~iD~lvnnAg~~~ 111 (267)
T 1vl8_A 97 FGKLDTVVNAAGINR 111 (267)
T ss_dssp HSCCCEEEECCCCCC
T ss_pred cCCCCEEEECCCcCC
Confidence 247999999976543
|
| >3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A* | Back alignment and structure |
|---|
Probab=81.49 E-value=9.4 Score=33.36 Aligned_cols=85 Identities=12% Similarity=-0.017 Sum_probs=56.6
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc---------cCC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVE 264 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~-p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~---------~~~ 264 (324)
.++++|=-|++ |.|+..+++.+. .+.+|+.+|.+++.++.+.+.+....-..++.++..|..+.-. ...
T Consensus 7 ~~k~~lVTGas-~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 85 (265)
T 3lf2_A 7 SEAVAVVTGGS-SGIGLATVELLLEAGAAVAFCARDGERLRAAESALRQRFPGARLFASVCDVLDALQVRAFAEACERTL 85 (265)
T ss_dssp TTCEEEEETCS-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence 45567766654 556666666541 3578999999999888777776652222348999999876311 112
Q ss_pred CCeeEEEEcCCCCCCC
Q 020573 265 GKLSGVVSNPPYIPSD 280 (324)
Q Consensus 265 ~~fDlIVsNPPYi~~~ 280 (324)
++.|++|.|--+....
T Consensus 86 g~id~lvnnAg~~~~~ 101 (265)
T 3lf2_A 86 GCASILVNNAGQGRVS 101 (265)
T ss_dssp CSCSEEEECCCCCCCB
T ss_pred CCCCEEEECCCCCCCC
Confidence 5799999998765443
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=81.26 E-value=1.4 Score=41.04 Aligned_cols=43 Identities=26% Similarity=0.278 Sum_probs=34.3
Q ss_pred CCCeEEEEc-CC-ccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 020573 195 RDGFWVDLG-TG-SGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF 238 (324)
Q Consensus 195 ~~~~VLDLG-cG-sG~iai~la~~~~p~~~V~gvDis~~al~~Ar~ 238 (324)
++.+||=.| +| .|.+++.+|+.+ ..++|+++|.+++-++.+++
T Consensus 171 ~g~~VlV~Ga~G~vG~~a~qlak~~-~g~~Vi~~~~~~~~~~~~~~ 215 (363)
T 4dvj_A 171 AAPAILIVGGAGGVGSIAVQIARQR-TDLTVIATASRPETQEWVKS 215 (363)
T ss_dssp SEEEEEEESTTSHHHHHHHHHHHHH-CCSEEEEECSSHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHHHH
Confidence 466888888 54 588889999875 45799999999988887754
|
| >3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=80.77 E-value=7.7 Score=34.65 Aligned_cols=80 Identities=14% Similarity=0.025 Sum_probs=51.6
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhC-CCcEEEEEeCC--HHHHHHHHHHHHHcCCCCcEEEEEcccccccc---------c
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLN--PLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------D 262 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~-p~~~V~gvDis--~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~---------~ 262 (324)
.++++|=-| |+|.|+..+++.+. .+.+|+.+|.+ ....+...+.++..+ .++.++.+|+.+.-. .
T Consensus 48 ~~k~vlVTG-as~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~ 124 (294)
T 3r3s_A 48 KDRKALVTG-GDSGIGRAAAIAYAREGADVAINYLPAEEEDAQQVKALIEECG--RKAVLLPGDLSDESFARSLVHKARE 124 (294)
T ss_dssp TTCEEEEET-TTSHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHHHHHHTT--CCEEECCCCTTSHHHHHHHHHHHHH
T ss_pred CCCEEEEeC-CCcHHHHHHHHHHHHCCCEEEEEeCCcchhHHHHHHHHHHHcC--CcEEEEEecCCCHHHHHHHHHHHHH
Confidence 455677666 45667777776542 35789999987 344555555555554 358999999876311 0
Q ss_pred CCCCeeEEEEcCCCC
Q 020573 263 VEGKLSGVVSNPPYI 277 (324)
Q Consensus 263 ~~~~fDlIVsNPPYi 277 (324)
..++.|++|.|--..
T Consensus 125 ~~g~iD~lv~nAg~~ 139 (294)
T 3r3s_A 125 ALGGLDILALVAGKQ 139 (294)
T ss_dssp HHTCCCEEEECCCCC
T ss_pred HcCCCCEEEECCCCc
Confidence 125799999997653
|
| >3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=80.62 E-value=7.3 Score=34.38 Aligned_cols=81 Identities=17% Similarity=0.025 Sum_probs=55.7
Q ss_pred CCeEEEEcCCccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc---------cCCC
Q 020573 196 DGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVEG 265 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~-~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~---------~~~~ 265 (324)
++++|=-| |+|.|+..+++.+ ..+.+|+.+|.+++.++.....++..+. ++.++..|..+.-. ...+
T Consensus 28 ~k~~lVTG-as~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~Dv~d~~~v~~~~~~~~~~~g 104 (270)
T 3ftp_A 28 KQVAIVTG-ASRGIGRAIALELARRGAMVIGTATTEAGAEGIGAAFKQAGL--EGRGAVLNVNDATAVDALVESTLKEFG 104 (270)
T ss_dssp TCEEEETT-CSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHTC--CCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCEEEEEC-CCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--cEEEEEEeCCCHHHHHHHHHHHHHHcC
Confidence 44555544 6677777777654 2357999999999888877777776653 48888999876311 0124
Q ss_pred CeeEEEEcCCCCCC
Q 020573 266 KLSGVVSNPPYIPS 279 (324)
Q Consensus 266 ~fDlIVsNPPYi~~ 279 (324)
+.|++|.|--+...
T Consensus 105 ~iD~lvnnAg~~~~ 118 (270)
T 3ftp_A 105 ALNVLVNNAGITQD 118 (270)
T ss_dssp CCCEEEECCCCCCC
T ss_pred CCCEEEECCCCCCC
Confidence 79999999765543
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=80.53 E-value=1.2 Score=41.29 Aligned_cols=45 Identities=11% Similarity=0.006 Sum_probs=35.6
Q ss_pred CCCCCCeEEEEcCC-ccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 020573 192 DGLRDGFWVDLGTG-SGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF 238 (324)
Q Consensus 192 ~~~~~~~VLDLGcG-sG~iai~la~~~~p~~~V~gvDis~~al~~Ar~ 238 (324)
...++.+||-+|+| .|.+++.+|+.. +++|+++|.+++.++.+++
T Consensus 176 ~~~~g~~VlV~GaG~vG~~~~qlak~~--Ga~Vi~~~~~~~~~~~~~~ 221 (360)
T 1piw_A 176 GCGPGKKVGIVGLGGIGSMGTLISKAM--GAETYVISRSSRKREDAMK 221 (360)
T ss_dssp TCSTTCEEEEECCSHHHHHHHHHHHHH--TCEEEEEESSSTTHHHHHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEcCCHHHHHHHHH
Confidence 34457899999986 477888888876 4689999999888877764
|
| >1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A* | Back alignment and structure |
|---|
Probab=80.53 E-value=8.6 Score=33.33 Aligned_cols=81 Identities=7% Similarity=-0.058 Sum_probs=54.1
Q ss_pred CCeEEEEcCCccHHHHHHHHHhC----CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc---------c
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLG----SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------D 262 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~----p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~---------~ 262 (324)
++++|= --|+|.++..+++.+. .+.+|+.+|.+++.++.+.+.+.......++.++..|+.+.-. .
T Consensus 6 ~k~~lV-TGas~gIG~~ia~~l~~~~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 84 (259)
T 1oaa_A 6 CAVCVL-TGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGTEAGVQRLLSAVRE 84 (259)
T ss_dssp SEEEEE-SSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CcEEEE-eCCCChHHHHHHHHHHHhhcCCCeEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEecCCCCHHHHHHHHHHHHh
Confidence 334554 4466788888888763 3689999999998877666666543222458999999876310 1
Q ss_pred --CCCCee--EEEEcCCCC
Q 020573 263 --VEGKLS--GVVSNPPYI 277 (324)
Q Consensus 263 --~~~~fD--lIVsNPPYi 277 (324)
..+++| ++|.|--+.
T Consensus 85 ~~~~g~~d~~~lvnnAg~~ 103 (259)
T 1oaa_A 85 LPRPEGLQRLLLINNAATL 103 (259)
T ss_dssp SCCCTTCCEEEEEECCCCC
T ss_pred ccccccCCccEEEECCccc
Confidence 124678 999987553
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=80.24 E-value=3.3 Score=38.24 Aligned_cols=44 Identities=16% Similarity=0.206 Sum_probs=35.6
Q ss_pred CCCCCeEEEEcCCc-cHHHHHHHHHhCCCc-EEEEEeCCHHHHHHHHH
Q 020573 193 GLRDGFWVDLGTGS-GAIAIGIARVLGSKG-SIIAVDLNPLAAAVAAF 238 (324)
Q Consensus 193 ~~~~~~VLDLGcGs-G~iai~la~~~~p~~-~V~gvDis~~al~~Ar~ 238 (324)
..++.+||-.|+|. |.+++.+|+.+ ++ +|+++|.+++.++.+++
T Consensus 169 ~~~g~~VlV~GaG~vG~~aiqlak~~--Ga~~Vi~~~~~~~~~~~a~~ 214 (356)
T 1pl8_A 169 VTLGHKVLVCGAGPIGMVTLLVAKAM--GAAQVVVTDLSATRLSKAKE 214 (356)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHT--TCSEEEEEESCHHHHHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHH
Confidence 34577999999885 88888899875 35 89999999988877753
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 324 | ||||
| d2h00a1 | 250 | c.66.1.54 (A:5-254) Methyltransferase 10 domain co | 1e-19 | |
| d2b25a1 | 324 | c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 | 7e-08 | |
| d1yb2a1 | 250 | c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {T | 8e-08 | |
| d2b3ta1 | 274 | c.66.1.30 (A:2-275) N5-glutamine methyltransferase | 6e-07 | |
| d1l3ia_ | 186 | c.66.1.22 (A:) Precorrin-6Y methyltransferase (Cbi | 5e-05 | |
| d1i9ga_ | 264 | c.66.1.13 (A:) Probable methyltransferase Rv2118c | 8e-05 | |
| d2ih2a1 | 223 | c.66.1.27 (A:21-243) DNA methylase TaqI, N-termina | 9e-05 | |
| d2f8la1 | 328 | c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 { | 2e-04 | |
| d1o9ga_ | 249 | c.66.1.29 (A:) rRNA methyltransferase AviRa {Strep | 0.001 | |
| d1g8aa_ | 227 | c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyro | 0.001 | |
| d1ne2a_ | 197 | c.66.1.32 (A:) Hypothetical protein Ta1320 {Archae | 0.002 | |
| d1u2za_ | 406 | c.66.1.31 (A:) Catalytic, N-terminal domain of his | 0.003 |
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Score = 84.1 bits (207), Expect = 1e-19
Identities = 30/185 (16%), Positives = 64/185 (34%), Gaps = 18/185 (9%)
Query: 156 EHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVR--DNDGLRDGFWVDLGTGSGAIAIGI 213
E + L + + IP L + L+ D+D +D+GTG+ I +
Sbjct: 21 EDF-GLSIDIPLERLIPTVPLRLNYIHWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLL 79
Query: 214 ARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDV-----EGKLS 268
L + +A +++ + A N ++ L D+I++ + L D E
Sbjct: 80 GATL-NGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYD 138
Query: 269 GVVSNPPYIPSDDI--SGLQVEVGKHEPRLAL-------DGGVDGLDYLLHLCNGTASML 319
+ NPP+ + + P L+++ + + + +
Sbjct: 139 FCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQLK 198
Query: 320 KPDKW 324
K +W
Sbjct: 199 KRLRW 203
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} Length = 324 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.9 bits (121), Expect = 7e-08
Identities = 25/154 (16%), Positives = 65/154 (42%), Gaps = 13/154 (8%)
Query: 130 IGLDELYGL-WKQRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRP-ETELMVDLVSDVL 187
+ ++ G Q + QY++ D V+ ++ G I P + +++ ++
Sbjct: 39 VPFGKIVGKFPGQILRSSFGKQYMLRRPALEDYVVLMKRGTAITFPKDINMILSMM---- 94
Query: 188 VRDNDGLRDGFWV-DLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQ 246
+ G V + G+GSG +++ +++ +GS+G +I+ ++ +A N + +
Sbjct: 95 -----DINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDS 149
Query: 247 DIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSD 280
+ + W + + +SG + + D
Sbjct: 150 WKLSHVEE-WPDNVDFIHKDISGATEDIKSLTFD 182
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Score = 50.1 bits (119), Expect = 8e-08
Identities = 16/71 (22%), Positives = 29/71 (40%), Gaps = 1/71 (1%)
Query: 193 GLRDG-FWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEI 251
GLR G +++G GSG ++ I L KG++ V+ + A N + +
Sbjct: 82 GLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRT 141
Query: 252 RQGSWFGKLKD 262
+ + D
Sbjct: 142 SRSDIADFISD 152
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} Length = 274 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Score = 47.6 bits (112), Expect = 6e-07
Identities = 60/193 (31%), Positives = 88/193 (45%), Gaps = 11/193 (5%)
Query: 132 LDELYGLWKQRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDN 191
+L L +R +P +L G + L L V IPRP+TE +V+ L
Sbjct: 51 CQQLDALLTRRR-DGEPIAHLTGVREFWSLPLFVSPATLIPRPDTECLVEQALARLPEQP 109
Query: 192 DGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEI 251
+DLGTG+GAIA+ +A IIAVD P A ++A NAQ +++I I
Sbjct: 110 C-----RILDLGTGTGAIALALASER-PDCEIIAVDRMPDAVSLAQRNAQHLAIKNIH-I 162
Query: 252 RQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHL 311
Q WF L + + +VSNPPYI D Q + EP AL G+ ++H+
Sbjct: 163 LQSDWFSALAG--QQFAMIVSNPPYIDEQDPHL-QQGDVRFEPLTALVAADSGMADIVHI 219
Query: 312 CNGTASMLKPDKW 324
+ + L +
Sbjct: 220 IEQSRNALVSGGF 232
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Score = 41.3 bits (96), Expect = 5e-05
Identities = 21/95 (22%), Positives = 38/95 (40%), Gaps = 9/95 (9%)
Query: 171 IPRPETELMVDLVSDVLVRDNDGLRDGFWV-DLGTGSGAIAIGIARVLGSKGSIIAVDLN 229
+P P + L+ + D+G G+G + + + G + A+D N
Sbjct: 13 VPGPTAMEVRCLIMCLA-----EPGKNDVAVDVGCGTGGVTL---ELAGRVRRVYAIDRN 64
Query: 230 PLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVE 264
P A + N QR+GL D + + +G L +
Sbjct: 65 PEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIP 99
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 264 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 41.1 bits (96), Expect = 8e-05
Identities = 28/126 (22%), Positives = 47/126 (37%), Gaps = 8/126 (6%)
Query: 129 RIGLDELYGL-WKQRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVL 187
I D + GL ++ +LV D V+S+ G + P+ + D+
Sbjct: 36 SIAHDAVIGLEQGSVVKSSNGALFLVLRPLLVDYVMSMPRGPQVIYPKDAAQIVHEGDI- 94
Query: 188 VRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQD 247
G R ++ G GSGA+ + + R +G G +I+ + A A N Q
Sbjct: 95 ---FPGAR---VLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQP 148
Query: 248 IIEIRQ 253
R
Sbjct: 149 PDNWRL 154
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} Length = 223 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Score = 40.8 bits (94), Expect = 9e-05
Identities = 16/131 (12%), Positives = 34/131 (25%), Gaps = 8/131 (6%)
Query: 169 VFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDL 228
V P + MV L G R ++ G G+ + V++
Sbjct: 1 VETPPEVVDFMVSLA-----EAPRGGR---VLEPACAHGPFLRAFREAHGTAYRFVGVEI 52
Query: 229 NPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVE 288
+P A + + + E + G + P ++ +
Sbjct: 53 DPKALDLPPWAEGILADFLLWEPGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKA 112
Query: 289 VGKHEPRLALD 299
+ + L
Sbjct: 113 FSTWKGKYNLY 123
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} Length = 328 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Score = 40.3 bits (93), Expect = 2e-04
Identities = 17/138 (12%), Positives = 44/138 (31%), Gaps = 17/138 (12%)
Query: 144 EKRKPFQYLVGCEHWRDLVLSVEEG-VFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDL 202
E RK Q + + + ++ P ++ L+ +++ + +D
Sbjct: 73 EIRKGLQLALL----KGMKHGIQVNHQMTPDSIGFIVAYLLEK-VIQKKKNVS---ILDP 124
Query: 203 GTGSGAIAIGI----ARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFG 258
G+ + + VD++ L ++A A + + + G
Sbjct: 125 ACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLAN- 183
Query: 259 KLKDVEGKLSGVVSNPPY 276
+ + V+S+ P
Sbjct: 184 ---LLVDPVDVVISDLPV 198
|
| >d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]} Length = 249 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase AviRa domain: rRNA methyltransferase AviRa species: Streptomyces viridochromogenes [TaxId: 1938]
Score = 37.3 bits (86), Expect = 0.001
Identities = 13/93 (13%), Positives = 18/93 (19%), Gaps = 9/93 (9%)
Query: 214 ARVLGSKGSIIAVDLNPLAAAVA---AFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSG- 269
+ AA A G IR F
Sbjct: 108 ELERREQSERFGKPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSA 167
Query: 270 ---VVSNPPYIP--SDDISGLQVEVGKHEPRLA 297
V+++ PY + V LA
Sbjct: 168 PDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLA 200
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 37.0 bits (85), Expect = 0.001
Identities = 12/67 (17%), Positives = 24/67 (35%), Gaps = 1/67 (1%)
Query: 190 DNDGLRDGFW-VDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDI 248
N ++ G + LG SG A ++ ++G +G I ++ +P +
Sbjct: 67 KNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVP 126
Query: 249 IEIRQGS 255
I
Sbjct: 127 ILGDATK 133
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 197 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 36.2 bits (83), Expect = 0.002
Identities = 20/100 (20%), Positives = 37/100 (37%), Gaps = 14/100 (14%)
Query: 181 DLVSDVL--VRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF 238
+ L + ++ + +D GTG+G +A G + S+ A D++P A A
Sbjct: 32 STAAYFLIEIYNDGNIGGRSVIDAGTGNGILACGSYLL--GAESVTAFDIDPDAIETAKR 89
Query: 239 NAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIP 278
N + ++ GK + NPP+
Sbjct: 90 NC------GGVNFMVADVS----EISGKYDTWIMNPPFGS 119
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 406 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 37.0 bits (85), Expect = 0.003
Identities = 15/71 (21%), Positives = 28/71 (39%), Gaps = 2/71 (2%)
Query: 177 ELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVA 236
EL+ + +SDV + D F +DLG+G G + A G ++ A+ +
Sbjct: 199 ELLPNFLSDVYQQCQLKKGDTF-MDLGSGVGNCVVQAALECGCA-LSFGCEIMDDASDLT 256
Query: 237 AFNAQRYGLQD 247
+ +
Sbjct: 257 ILQYEELKKRC 267
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 324 | |||
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 100.0 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 100.0 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 99.95 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.8 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.73 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 99.72 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.69 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.69 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 99.68 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.64 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 99.64 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 99.64 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 99.64 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.63 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.62 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 99.62 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 99.61 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 99.61 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 99.6 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 99.58 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 99.58 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.58 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 99.57 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.56 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.54 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.53 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.52 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.52 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.52 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 99.51 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.51 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.51 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.48 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.48 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.47 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.47 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.47 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.46 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.46 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.45 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.44 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 99.44 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 99.43 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 99.42 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.4 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.37 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.36 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 99.35 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.35 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.35 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.35 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 99.34 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 99.34 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.34 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.33 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.33 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.31 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.3 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.3 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 99.29 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 99.29 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 99.27 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.27 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 99.26 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 99.25 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 99.24 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 99.23 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.22 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 99.17 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 99.1 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.09 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.09 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 99.05 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 99.05 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 99.03 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 99.03 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 99.01 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 98.9 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 98.9 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 98.88 | |
| d1o9ga_ | 249 | rRNA methyltransferase AviRa {Streptomyces viridoc | 98.83 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 98.83 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 98.8 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 98.75 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 98.74 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 98.7 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 98.69 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 98.65 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 98.64 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 98.59 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 98.54 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 98.49 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 98.48 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 98.46 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 98.41 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 98.35 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 98.35 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 98.33 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 98.29 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 98.06 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 97.63 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 97.48 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 97.16 | |
| d1dcta_ | 324 | DNA methylase HaeIII {Haemophilus aegyptius [TaxId | 97.02 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 96.91 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 96.88 | |
| d2c7pa1 | 327 | DNA methylase HhaI {Haemophilus haemolyticus [TaxI | 96.74 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 96.62 | |
| d1g55a_ | 343 | DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | 96.22 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 96.22 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 96.05 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 95.62 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 94.87 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 94.7 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 93.95 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 93.71 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 93.56 | |
| d1zkda1 | 365 | Hypothetical protein RPA4359 {Rhodopseudomonas pal | 93.08 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 92.83 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 92.76 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 92.0 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 91.71 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 91.55 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 91.45 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 91.39 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 91.25 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 91.08 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 90.81 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 90.34 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 90.23 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 90.2 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 89.79 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 89.79 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 89.62 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 89.42 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 89.26 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 89.21 | |
| d1oaaa_ | 259 | Sepiapterin reductase {Mouse (Mus musculus) [TaxId | 89.14 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 89.05 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 88.92 | |
| d2py6a1 | 395 | Methyltransferase FkbM {Methylobacillus flagellatu | 88.38 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 88.26 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 88.15 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 87.69 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 87.2 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 87.15 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 86.98 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 86.74 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 86.66 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 86.61 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 85.8 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 85.57 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 85.51 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 85.43 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 85.24 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 85.1 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 84.87 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 84.74 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 84.7 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 84.44 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 84.25 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 83.92 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 83.26 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 82.64 | |
| d2d1ya1 | 248 | Hypothetical protein TTHA0369 {Thermus thermophilu | 82.37 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 81.58 | |
| d1geea_ | 261 | Glucose dehydrogenase {Bacillus megaterium [TaxId: | 80.54 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 80.04 |
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.7e-49 Score=365.82 Aligned_cols=231 Identities=28% Similarity=0.353 Sum_probs=198.8
Q ss_pred HHHHHHHHHHHhhhccccccCCCCCCCccchHHHHHHHHHhhcCCCCCcccccccCCcccccCChhHHHHHHHHHHHHhc
Q 020573 66 LKKWHNWAKALASSVRSTFADSDNGPDSSILFRELNWLVEDSLEDPSLIPQLGFQNNSQSVRLRIGLDELYGLWKQRIEK 145 (324)
Q Consensus 66 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ll~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~r~~~ 145 (324)
..+|+++|.+++..++ .+ ..|++||++++++.+...+.+. .+..++.+..+.+..+..||.+
T Consensus 2 ~~~~l~~~~~~l~~~~-----------~p--~~da~~ll~~~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~rr~~ 63 (274)
T d2b3ta1 2 YQHWLREAISQLQASE-----------SP--RRDAEILLEHVTGRGRTFILAF-----GETQLTDEQCQQLDALLTRRRD 63 (274)
T ss_dssp HHHHHHHHHHTTTTSS-----------CH--HHHHHHHHHHHHTCCHHHHHHT-----TTCBCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCC-----------CH--HHHHHHHHHHHhCcCHHHHhhC-----CCCCCCHHHHHHHHHHHHHHhc
Confidence 4678888877654322 12 3799999999999986443311 1335777777888888888899
Q ss_pred CCCceeEEecccccCeeeeeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEE
Q 020573 146 RKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIA 225 (324)
Q Consensus 146 ~~pl~yi~g~~~f~~l~~~v~~~vliPrp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~g 225 (324)
|+|+|||+|+++|++++|.|+++||||||+||.+++.++... . ..+.+|||+|||||++++.++..+ |+.+|+|
T Consensus 64 g~PlqYI~G~~~F~~~~~~v~~~VlIPRpeTE~lv~~~l~~~-~----~~~~~vlDlGtGSG~I~i~la~~~-p~~~v~a 137 (274)
T d2b3ta1 64 GEPIAHLTGVREFWSLPLFVSPATLIPRPDTECLVEQALARL-P----EQPCRILDLGTGTGAIALALASER-PDCEIIA 137 (274)
T ss_dssp TCCHHHHSCEEEETTEEEECCTTSCCCCTTHHHHHHHHHHHS-C----SSCCEEEEETCTTSHHHHHHHHHC-TTSEEEE
T ss_pred CcChhhhcCcEEEeeeEEEEeccccccccchhhhhhhHhhhh-c----ccccceeeeehhhhHHHHHHHhhC-Ccceeee
Confidence 999999999999999999999999999999999999988765 1 235689999999999999999996 8999999
Q ss_pred EeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcH
Q 020573 226 VDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGL 305 (324)
Q Consensus 226 vDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl 305 (324)
+|+|+.|+++|++|++++++. +++++++|+++.+.. ++||+|||||||++..++..++ ++.+|||+.||+||.||+
T Consensus 138 vDis~~Al~~A~~Na~~~~~~-~v~~~~~d~~~~~~~--~~fDlIvsNPPYi~~~~~~~~~-~v~~~eP~~AL~~g~dGl 213 (274)
T d2b3ta1 138 VDRMPDAVSLAQRNAQHLAIK-NIHILQSDWFSALAG--QQFAMIVSNPPYIDEQDPHLQQ-GDVRFEPLTALVAADSGM 213 (274)
T ss_dssp ECSSHHHHHHHHHHHHHHTCC-SEEEECCSTTGGGTT--CCEEEEEECCCCBCTTCHHHHS-SGGGSSCSTTTBCHHHHT
T ss_pred ccchhHHHhHHHHHHHHhCcc-cceeeecccccccCC--CceeEEEecchhhhhhhhcccc-cccccchhhhcccccccc
Confidence 999999999999999999995 599999999987654 6899999999999999876655 566899999999999999
Q ss_pred HHHHHHHHHHhcccCCCCC
Q 020573 306 DYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 306 ~~~~~il~~a~~~LkpgG~ 324 (324)
++++++++++.++|+|||+
T Consensus 214 ~~~~~i~~~a~~~L~~~G~ 232 (274)
T d2b3ta1 214 ADIVHIIEQSRNALVSGGF 232 (274)
T ss_dssp HHHHHHHHHHGGGEEEEEE
T ss_pred hHHHHHHHHHHHhcCCCCE
Confidence 9999999999999999985
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=2.4e-45 Score=337.40 Aligned_cols=230 Identities=28% Similarity=0.404 Sum_probs=194.2
Q ss_pred HHHHHHHHHHHHhhhccccccCCCCCCCccchHHHHHHHHHhhcCCCCCcccccccCCcccccCChhHHHHHHHHHHHHh
Q 020573 65 DLKKWHNWAKALASSVRSTFADSDNGPDSSILFRELNWLVEDSLEDPSLIPQLGFQNNSQSVRLRIGLDELYGLWKQRIE 144 (324)
Q Consensus 65 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ll~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~r~~ 144 (324)
+|+++.+.+....... +++ ...|++||+.++++.+...+.+ . +..++.+..+.+..|.+||.
T Consensus 2 ~i~~l~~~~~~~l~~~------~e~------~~lda~lll~~~l~~~~~~l~~---~---~~~l~~~~~~~~~~~i~rR~ 63 (271)
T d1nv8a_ 2 KIWSLIRDCSGKLEGV------TET------SVLEVLLIVSRVLGIRKEDLFL---K---DLGVSPTEEKRILELVEKRA 63 (271)
T ss_dssp CHHHHHHHHHHHTTTT------CSC------HHHHHHHHHHHHHTCCGGGGCC---S---SCCCCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcC------CCC------HHHHHHHHHHHHHCcCHHHHhh---C---CCCCCHHHHHHHHHHHHHhh
Confidence 4677888776664311 111 2388999999999998644431 1 23577777788888999999
Q ss_pred cCCCceeEEecccccCeeeeeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEE
Q 020573 145 KRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSII 224 (324)
Q Consensus 145 ~~~pl~yi~g~~~f~~l~~~v~~~vliPrp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~ 224 (324)
+|+|+|||+|+++|++++|.|+++||||||+||.+++.+.+.. ... ...+++|+|||+|++++.+++. ++++|+
T Consensus 64 ~~~Pl~YI~g~~~F~~~~f~v~~~vlIPRpeTE~lv~~~~~~~-~~~---~~~~vld~g~GsG~i~~~la~~--~~~~v~ 137 (271)
T d1nv8a_ 64 SGYPLHYILGEKEFMGLSFLVEEGVFVPRPETEELVELALELI-RKY---GIKTVADIGTGSGAIGVSVAKF--SDAIVF 137 (271)
T ss_dssp TTCCHHHHHTEEEETTEEEECCTTSCCCCTTHHHHHHHHHHHH-HHH---TCCEEEEESCTTSHHHHHHHHH--SSCEEE
T ss_pred CCCChhhhcCcEEEeeeEEEEecCccCchhhhhhhhhhhhhhh-ccc---cccEEEEeeeeeehhhhhhhhc--ccceee
Confidence 9999999999999999999999999999999999999999877 222 2458999999999999999864 789999
Q ss_pred EEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCc
Q 020573 225 AVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDG 304 (324)
Q Consensus 225 gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dG 304 (324)
|+|+|++|+++|++|++++++.+++.+..+||++.+....++||+||||||||+..+ .++.++ .|||+.||+||.||
T Consensus 138 a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~~~~~~~~fDlIVsNPPYI~~~~--~l~~~~-~~EP~~AL~gg~dG 214 (271)
T d1nv8a_ 138 ATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSNPPYVKSSA--HLPKDV-LFEPPEALFGGEDG 214 (271)
T ss_dssp EEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEECCCCBCGGG--SCTTSC-CCSCHHHHBCTTTS
T ss_pred echhhhhHHHHHHHHHHHcCCCceeEEeecccccccccccCcccEEEEcccccCccc--ccceee-eeccccccccccch
Confidence 999999999999999999999999999999999987655579999999999998653 466666 69999999999999
Q ss_pred HHHHHHHHHHHhcccCCCCC
Q 020573 305 LDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 305 l~~~~~il~~a~~~LkpgG~ 324 (324)
|++|++|+. ++|+|||+
T Consensus 215 l~~~r~i~~---~~L~~~G~ 231 (271)
T d1nv8a_ 215 LDFYREFFG---RYDTSGKI 231 (271)
T ss_dssp CHHHHHHHH---HCCCTTCE
T ss_pred HHHHHHHHH---HhcCCCCE
Confidence 999999974 68999995
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=2.5e-28 Score=221.40 Aligned_cols=167 Identities=17% Similarity=0.207 Sum_probs=118.8
Q ss_pred cccCeeeeeeCCcccccchHHHHHHHHHHHhhhcC--CCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHH
Q 020573 157 HWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDN--DGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAA 234 (324)
Q Consensus 157 ~f~~l~~~v~~~vliPrp~te~lve~l~~~l~~~~--~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~ 234 (324)
+|+|++|.|.+++||||++++..+...+..+.... ......++||+||||||+++.+++++ ++++|+|+|+|++|++
T Consensus 21 ~f~gl~~~v~~~~LiPr~~~r~~~~~~i~~l~~~~~~~~~~~~~~LDiGtGsg~I~~~l~~~~-~~~~~~~~Di~~~al~ 99 (250)
T d2h00a1 21 EDFGLSIDIPLERLIPTVPLRLNYIHWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLLGATL-NGWYFLATEVDDMCFN 99 (250)
T ss_dssp HHHCCCCCCCTTSCCCCHHHHHHHHHHHHHHHCCCCGGGCCCCEEEEESCTTTTHHHHHHHHH-HCCEEEEEESCHHHHH
T ss_pred HHcCceEEeCCCeecCCCCCHHHHHHHHHHHhhhhccCccccceEEEeCCCchHHHHHHHHhC-CCccccceecCHHHHH
Confidence 47799999999999999988776554443331211 11234589999999999999999997 8899999999999999
Q ss_pred HHHHHHHHcCCCCcEEEEEccccccccc-----CCCCeeEEEEcCCCCCCCCcccc--hhhhhcccccccccCCCCcH--
Q 020573 235 VAAFNAQRYGLQDIIEIRQGSWFGKLKD-----VEGKLSGVVSNPPYIPSDDISGL--QVEVGKHEPRLALDGGVDGL-- 305 (324)
Q Consensus 235 ~Ar~N~~~~gl~~rv~~~~gD~~~~l~~-----~~~~fDlIVsNPPYi~~~~~~~l--~~ev~~~eP~~aL~gg~dGl-- 305 (324)
+|++|++++++.+++.+++.++.+.+.. ..++||+|||||||++..+.... ...+..++|..++.++.++|
T Consensus 100 ~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD~ivsNPPY~~~~e~~~~~~~~k~~~~~p~~~~~~~~~el~~ 179 (250)
T d2h00a1 100 YAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMA 179 (250)
T ss_dssp HHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEEEECCCCC-------------------------CTTTTHH
T ss_pred HHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCceeEEEecCcccccchhhhccccccccccCchhhcCcccccccc
Confidence 9999999999999999999877654321 24689999999999987654432 34456778998988887654
Q ss_pred -----HHHHHHHHHHhcccCCCCC
Q 020573 306 -----DYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 306 -----~~~~~il~~a~~~LkpgG~ 324 (324)
.+++++++++..+++..||
T Consensus 180 ~gGe~~F~~~ii~es~~~~~~~g~ 203 (250)
T d2h00a1 180 EGGELEFVKRIIHDSLQLKKRLRW 203 (250)
T ss_dssp HHTHHHHHHHHHHHHHHHGGGBSC
T ss_pred ccchhhHHHHHHHHHHHHhhcCcE
Confidence 6899999999999999886
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.80 E-value=1.4e-19 Score=156.67 Aligned_cols=126 Identities=25% Similarity=0.367 Sum_probs=101.9
Q ss_pred eeeeeeCCccccc---chHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Q 020573 161 LVLSVEEGVFIPR---PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAA 237 (324)
Q Consensus 161 l~~~v~~~vliPr---p~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar 237 (324)
+.|...+++|.+. +.|+++++. + ...++.+|||+|||+|.+++.+++.. .+|+++|+|+.+++.|+
T Consensus 23 ~~~~t~~gvF~~~~~d~~t~lLi~~----l----~~~~~~~VLDiGcG~G~~~~~la~~~---~~v~~iD~s~~~i~~a~ 91 (194)
T d1dusa_ 23 LKFKTDSGVFSYGKVDKGTKILVEN----V----VVDKDDDILDLGCGYGVIGIALADEV---KSTTMADINRRAIKLAK 91 (194)
T ss_dssp EEEEEETTSTTTTSCCHHHHHHHHH----C----CCCTTCEEEEETCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHH
T ss_pred EEEEcCCCccCCCCcCHHHHHHHHh----C----CcCCCCeEEEEeecCChhHHHHHhhc---cccceeeeccccchhHH
Confidence 3566788999885 446666553 2 22356799999999999999999864 58999999999999999
Q ss_pred HHHHHcCCCC-cEEEEEcccccccccCCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHh
Q 020573 238 FNAQRYGLQD-IIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTA 316 (324)
Q Consensus 238 ~N~~~~gl~~-rv~~~~gD~~~~l~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~ 316 (324)
+|++.+++.+ ++++..+|+++.+. .++||+|++||||.. |.+.+..+++++.
T Consensus 92 ~n~~~~~l~~~~i~~~~~d~~~~~~--~~~fD~Ii~~~p~~~-------------------------~~~~~~~~l~~~~ 144 (194)
T d1dusa_ 92 ENIKLNNLDNYDIRVVHSDLYENVK--DRKYNKIITNPPIRA-------------------------GKEVLHRIIEEGK 144 (194)
T ss_dssp HHHHHTTCTTSCEEEEECSTTTTCT--TSCEEEEEECCCSTT-------------------------CHHHHHHHHHHHH
T ss_pred HHHHHhCCccceEEEEEcchhhhhc--cCCceEEEEcccEEe-------------------------cchhhhhHHHHHH
Confidence 9999999875 69999999988655 368999999999852 1334557899999
Q ss_pred cccCCCCC
Q 020573 317 SMLKPDKW 324 (324)
Q Consensus 317 ~~LkpgG~ 324 (324)
++|||||+
T Consensus 145 ~~LkpgG~ 152 (194)
T d1dusa_ 145 ELLKDNGE 152 (194)
T ss_dssp HHEEEEEE
T ss_pred HhcCcCcE
Confidence 99999984
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.73 E-value=5.4e-18 Score=145.59 Aligned_cols=117 Identities=23% Similarity=0.279 Sum_probs=95.9
Q ss_pred cccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEE
Q 020573 171 IPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIE 250 (324)
Q Consensus 171 iPrp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~ 250 (324)
+|.|..+.+...++..+ ...++.+|||+|||+|.+++.+|+.. .+|+|+|+++++++.|++|++++|+.++++
T Consensus 13 ~~~~t~~eir~~il~~l----~~~~g~~VLDiGcGsG~~s~~lA~~~---~~V~avD~~~~~l~~a~~n~~~~gl~~~v~ 85 (186)
T d1l3ia_ 13 VPGPTAMEVRCLIMCLA----EPGKNDVAVDVGCGTGGVTLELAGRV---RRVYAIDRNPEAISTTEMNLQRHGLGDNVT 85 (186)
T ss_dssp SCCCCCHHHHHHHHHHH----CCCTTCEEEEESCTTSHHHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHTTCCTTEE
T ss_pred CCCCChHHHHHHHHHhc----CCCCCCEEEEEECCeEcccccccccc---eEEEEecCCHHHHHHHHHHHHHcCCCcceE
Confidence 46677777777777776 34567899999999999999998753 699999999999999999999999988899
Q ss_pred EEEcccccccccCCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 251 IRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 251 ~~~gD~~~~l~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
++++|+.+.... ...||.|++|.++.. +..+++.+.++|||||+
T Consensus 86 ~~~gda~~~~~~-~~~~D~v~~~~~~~~-----------------------------~~~~~~~~~~~LkpgG~ 129 (186)
T d1l3ia_ 86 LMEGDAPEALCK-IPDIDIAVVGGSGGE-----------------------------LQEILRIIKDKLKPGGR 129 (186)
T ss_dssp EEESCHHHHHTT-SCCEEEEEESCCTTC-----------------------------HHHHHHHHHHTEEEEEE
T ss_pred EEECchhhcccc-cCCcCEEEEeCcccc-----------------------------chHHHHHHHHHhCcCCE
Confidence 999998875543 368999999865421 22577888889999884
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=99.72 E-value=3.4e-18 Score=145.51 Aligned_cols=114 Identities=24% Similarity=0.248 Sum_probs=89.4
Q ss_pred ccccCeeeeeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHH
Q 020573 156 EHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAV 235 (324)
Q Consensus 156 ~~f~~l~~~v~~~vliPrp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~ 235 (324)
-.|.|..+.+..++ ||.++.+.+.+.+++... ...+.+|||+|||+|.+++.++.+ +++|+++|+|+.+++.
T Consensus 7 g~~kg~~l~~~~~~---Rpt~~~v~e~lf~~l~~~--~~~g~~vLDl~~G~G~~~i~a~~~---ga~vv~vD~~~~a~~~ 78 (171)
T d1ws6a1 7 GKARGVALKVPASA---RPSPVRLRKALFDYLRLR--YPRRGRFLDPFAGSGAVGLEAASE---GWEAVLVEKDPEAVRL 78 (171)
T ss_dssp GGGTTCEECCCTTC---CCCCHHHHHHHHHHHHHH--CTTCCEEEEETCSSCHHHHHHHHT---TCEEEEECCCHHHHHH
T ss_pred ccccCCEeCCCCCC---CCCcHHHHHHHHHHhhcc--ccCCCeEEEeccccchhhhhhhhc---cchhhhcccCHHHHhh
Confidence 46788888876543 788888888887777321 235679999999999999998875 3689999999999999
Q ss_pred HHHHHHHcCCCCcEEEEEccccccc-ccCCCCeeEEEEcCCCC
Q 020573 236 AAFNAQRYGLQDIIEIRQGSWFGKL-KDVEGKLSGVVSNPPYI 277 (324)
Q Consensus 236 Ar~N~~~~gl~~rv~~~~gD~~~~l-~~~~~~fDlIVsNPPYi 277 (324)
|++|++.+++.+++....+|.+... ....++||+|++||||.
T Consensus 79 ~~~N~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~If~DPPY~ 121 (171)
T d1ws6a1 79 LKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAPPYA 121 (171)
T ss_dssp HHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECCCTT
T ss_pred hhHHHHhhccccceeeeehhcccccccccCCccceeEEccccc
Confidence 9999999999877777666654221 22346899999999995
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.69 E-value=5.9e-17 Score=144.26 Aligned_cols=117 Identities=21% Similarity=0.135 Sum_probs=95.0
Q ss_pred chHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEE
Q 020573 174 PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQ 253 (324)
Q Consensus 174 p~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~ 253 (324)
|.++..++.+.+.+ ...++.+|||+|||+|.++..+++.. +++|+|||+|+.+++.|+++++.+|+.++++|++
T Consensus 16 p~~~~~~~~l~~~~----~l~pg~~VLDiGCG~G~~~~~la~~~--~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~ 89 (245)
T d1nkva_ 16 PFTEEKYATLGRVL----RMKPGTRILDLGSGSGEMLCTWARDH--GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIH 89 (245)
T ss_dssp SCCHHHHHHHHHHT----CCCTTCEEEEETCTTCHHHHHHHHHT--CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEE
T ss_pred CCCHHHHHHHHHHc----CCCCCCEEEEEcCCCCHHHHHHHHhc--CCEEEEEecccchhhHHHHHHHHhhccccchhhh
Confidence 44556666677665 44567899999999999999999875 4799999999999999999999999999999999
Q ss_pred cccccccccCCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 254 GSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 254 gD~~~~l~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
+|+.+... .++||+|++. ++..|-+. ...+++++.++|||||+
T Consensus 90 ~d~~~~~~--~~~fD~v~~~--------------~~~~~~~d------------~~~~l~~~~r~LkPGG~ 132 (245)
T d1nkva_ 90 NDAAGYVA--NEKCDVAACV--------------GATWIAGG------------FAGAEELLAQSLKPGGI 132 (245)
T ss_dssp SCCTTCCC--SSCEEEEEEE--------------SCGGGTSS------------SHHHHHHHTTSEEEEEE
T ss_pred hHHhhccc--cCceeEEEEE--------------ehhhccCC------------HHHHHHHHHHHcCcCcE
Confidence 99988543 4799999994 22234332 23789999999999994
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.69 E-value=5.8e-17 Score=146.16 Aligned_cols=149 Identities=26% Similarity=0.404 Sum_probs=109.1
Q ss_pred hHHHHHHHHHHHHhcCCCcee--EEeccccc-----CeeeeeeCCcccc---cchHHHHHHHHHHHhhhcCCCCCCCeEE
Q 020573 131 GLDELYGLWKQRIEKRKPFQY--LVGCEHWR-----DLVLSVEEGVFIP---RPETELMVDLVSDVLVRDNDGLRDGFWV 200 (324)
Q Consensus 131 ~~~~~~~~~~~r~~~~~pl~y--i~g~~~f~-----~l~~~v~~~vliP---rp~te~lve~l~~~l~~~~~~~~~~~VL 200 (324)
+.++|.+.|++.+ .|+.. +.-...|. ...+.++|++-+= +|.|.++++.+.+.. .++.+||
T Consensus 55 ~~~dW~~~w~~~~---~p~~~~~~~v~~~~~~~~~~~~~i~i~pg~aFGTG~H~TT~l~l~~l~~~~------~~g~~VL 125 (254)
T d2nxca1 55 GDEDWLEAWRRDL---KPALAPPFVVLAPWHTWEGAEIPLVIEPGMAFGTGHHETTRLALKALARHL------RPGDKVL 125 (254)
T ss_dssp CHHHHHHHHHHHC---CCEEETTEEEECTTCCCCSSSEEEECCCC-----CCSHHHHHHHHHHHHHC------CTTCEEE
T ss_pred CcchHHHHHHhhC---CCEEECCEEEEeccccCCCcceEEEEccccccCccccchhhHHHHHHHhhc------CccCEEE
Confidence 4468889998875 34421 11112342 3456677766552 588999999887654 2567999
Q ss_pred EEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcCCCCCCC
Q 020573 201 DLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSD 280 (324)
Q Consensus 201 DLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNPPYi~~~ 280 (324)
|+|||+|.+++.+++. +.+|+|+|+|+.|++.|++|++++++. +++.++|+.+.+.. ++||+|++|-.
T Consensus 126 DiGcGsG~l~i~aa~~---g~~V~gvDis~~av~~A~~na~~n~~~--~~~~~~d~~~~~~~--~~fD~V~ani~----- 193 (254)
T d2nxca1 126 DLGTGSGVLAIAAEKL---GGKALGVDIDPMVLPQAEANAKRNGVR--PRFLEGSLEAALPF--GPFDLLVANLY----- 193 (254)
T ss_dssp EETCTTSHHHHHHHHT---TCEEEEEESCGGGHHHHHHHHHHTTCC--CEEEESCHHHHGGG--CCEEEEEEECC-----
T ss_pred EcccchhHHHHHHHhc---CCEEEEEECChHHHHHHHHHHHHcCCc--eeEEeccccccccc--cccchhhhccc-----
Confidence 9999999999988874 368999999999999999999999985 67899998775543 68999999821
Q ss_pred CcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 281 DISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 281 ~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
.+.+..+++.+.++|||||+
T Consensus 194 ------------------------~~~l~~l~~~~~~~LkpGG~ 213 (254)
T d2nxca1 194 ------------------------AELHAALAPRYREALVPGGR 213 (254)
T ss_dssp ------------------------HHHHHHHHHHHHHHEEEEEE
T ss_pred ------------------------cccHHHHHHHHHHhcCCCcE
Confidence 12344677888899999984
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.68 E-value=2.6e-17 Score=137.16 Aligned_cols=82 Identities=22% Similarity=0.252 Sum_probs=73.7
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEc
Q 020573 194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN 273 (324)
Q Consensus 194 ~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsN 273 (324)
..+.+|||+|||||.+++.++.+ ...+|+++|.++.+++.+++|++.+++.++++++++|+.+.+....++||+|++|
T Consensus 13 ~~g~~vlDl~~GtG~~~iea~~r--ga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~D 90 (152)
T d2esra1 13 FNGGRVLDLFAGSGGLAIEAVSR--GMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLD 90 (152)
T ss_dssp CCSCEEEEETCTTCHHHHHHHHT--TCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEEC
T ss_pred CCCCeEEEcCCccCHHHHHHHHh--CcceeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccccccccceeEec
Confidence 35789999999999999998886 2369999999999999999999999999999999999988665556799999999
Q ss_pred CCCC
Q 020573 274 PPYI 277 (324)
Q Consensus 274 PPYi 277 (324)
|||.
T Consensus 91 PPy~ 94 (152)
T d2esra1 91 PPYA 94 (152)
T ss_dssp CSSH
T ss_pred hhhc
Confidence 9994
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.64 E-value=5e-16 Score=141.04 Aligned_cols=104 Identities=24% Similarity=0.278 Sum_probs=86.8
Q ss_pred CCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEE
Q 020573 192 DGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVV 271 (324)
Q Consensus 192 ~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIV 271 (324)
...++.+|||+|||+|.++..+++++ +++|+|+|+|+.+++.|++++...|+.++++++++|+.+ ++...++||+|+
T Consensus 64 ~l~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~-l~~~~~sfD~V~ 140 (282)
T d2o57a1 64 VLQRQAKGLDLGAGYGGAARFLVRKF--GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLE-IPCEDNSYDFIW 140 (282)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTS-CSSCTTCEEEEE
T ss_pred CCCCCCEEEEeCCCCcHHHhhhhccC--CcEEEEEeccchhhhhhhccccccccccccccccccccc-ccccccccchhh
Confidence 44567899999999999999999985 479999999999999999999999999999999999987 343357999999
Q ss_pred EcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 272 SNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 272 sNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
++ ++..|-|. ...+++++.++|||||+
T Consensus 141 ~~--------------~~l~h~~d------------~~~~l~~~~~~LkpgG~ 167 (282)
T d2o57a1 141 SQ--------------DAFLHSPD------------KLKVFQECARVLKPRGV 167 (282)
T ss_dssp EE--------------SCGGGCSC------------HHHHHHHHHHHEEEEEE
T ss_pred cc--------------chhhhccC------------HHHHHHHHHHhcCCCcE
Confidence 94 33344332 23688999999999994
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=99.64 E-value=1.8e-16 Score=147.25 Aligned_cols=141 Identities=15% Similarity=0.093 Sum_probs=103.2
Q ss_pred CcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhC----CCcEEEEEeCCHHHHHHHHHHHHHc
Q 020573 168 GVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLG----SKGSIIAVDLNPLAAAVAAFNAQRY 243 (324)
Q Consensus 168 ~vliPrp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~----p~~~V~gvDis~~al~~Ar~N~~~~ 243 (324)
.+|+||+.++.+++.+..+. ....+.+|+|+|||+|.+++.+..++. ...+++|+|+++.+++.|+.|+..+
T Consensus 94 ~~~TP~~i~~~m~~l~~~~~----~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~ 169 (328)
T d2f8la1 94 HQMTPDSIGFIVAYLLEKVI----QKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQ 169 (328)
T ss_dssp GCCCCHHHHHHHHHHHHHHH----TTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEECcHHHHHHHHHHHHHHh----CCCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHh
Confidence 35789999999998887766 223456899999999999999987642 2358999999999999999999988
Q ss_pred CCCCcEEEEEcccccccccCCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCC
Q 020573 244 GLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDK 323 (324)
Q Consensus 244 gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG 323 (324)
+.. ..+.++|.+.... .++||+||+||||...... +...... ........+....+++.+.++|++||
T Consensus 170 ~~~--~~~~~~d~~~~~~--~~~fD~vi~NPPy~~~~~~-----~~~~~~~---~~~~~~~~~~~~~Fi~~~~~~Lk~~G 237 (328)
T d2f8la1 170 RQK--MTLLHQDGLANLL--VDPVDVVISDLPVGYYPDD-----ENAKTFE---LCREEGHSFAHFLFIEQGMRYTKPGG 237 (328)
T ss_dssp TCC--CEEEESCTTSCCC--CCCEEEEEEECCCSEESCH-----HHHTTST---TCCSSSCEEHHHHHHHHHHHTEEEEE
T ss_pred hhh--hhhhccccccccc--cccccccccCCCCCCCccc-----hhhhhcc---hhcccCcchHHHHHHHHHHHhcCCCC
Confidence 764 6788888876543 3689999999999643321 1111111 11111223344568999999999998
Q ss_pred C
Q 020573 324 W 324 (324)
Q Consensus 324 ~ 324 (324)
+
T Consensus 238 ~ 238 (328)
T d2f8la1 238 Y 238 (328)
T ss_dssp E
T ss_pred c
Confidence 4
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.64 E-value=1.6e-16 Score=148.09 Aligned_cols=111 Identities=23% Similarity=0.263 Sum_probs=92.2
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccccc---CCCCeeEEE
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKD---VEGKLSGVV 271 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~---~~~~fDlIV 271 (324)
++.+|||+|||+|.+++.+++. ...+|+++|+|+.+++.|++|++.||+.++++++++|.++.+.. ..++||+||
T Consensus 145 ~g~~VLDl~~g~G~~si~~a~~--ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD~Vi 222 (324)
T d2as0a2 145 PGDRVLDVFTYTGGFAIHAAIA--GADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVV 222 (324)
T ss_dssp TTCEEEETTCTTTHHHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeeecccCcccchhhhhhhc--CCcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCCCchh
Confidence 4679999999999999999986 34699999999999999999999999988899999999875432 246899999
Q ss_pred EcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 272 SNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 272 sNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
+|||+....... ...+...|.+++..|.++|||||+
T Consensus 223 ~DpP~~~~~~~~-----------------~~~~~~~y~~l~~~a~~ll~pGG~ 258 (324)
T d2as0a2 223 LDPPAFVQHEKD-----------------LKAGLRAYFNVNFAGLNLVKDGGI 258 (324)
T ss_dssp ECCCCSCSSGGG-----------------HHHHHHHHHHHHHHHHTTEEEEEE
T ss_pred cCCccccCCHHH-----------------HHHHHHHHHHHHHHHHHHcCCCcE
Confidence 999986543210 112466788999999999999995
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.64 E-value=3.6e-16 Score=141.38 Aligned_cols=106 Identities=17% Similarity=0.162 Sum_probs=85.7
Q ss_pred Ceeeeee--CCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Q 020573 160 DLVLSVE--EGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAA 237 (324)
Q Consensus 160 ~l~~~v~--~~vliPrp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar 237 (324)
|+.|.++ ...|.|+..+|.. .+...+ .++.+|||+|||+|.+++.+|+. ..++|+|+|+|+.+++.++
T Consensus 78 g~~~~~d~~~~~f~~~~~~er~--ri~~~~------~~g~~VlD~~aG~G~~~l~~a~~--~~~~V~avd~n~~a~~~~~ 147 (260)
T d2frna1 78 GIKYKLDVAKIMFSPANVKERV--RMAKVA------KPDELVVDMFAGIGHLSLPIAVY--GKAKVIAIEKDPYTFKFLV 147 (260)
T ss_dssp TEEEEEETTTSCCCGGGHHHHH--HHHHHC------CTTCEEEETTCTTTTTHHHHHHH--TCCEEEEECCCHHHHHHHH
T ss_pred CeeEEeccccccEecCCHHHHH--HHHhhc------CCccEEEECcceEcHHHHHHHHh--CCcEEEEecCCHHHHHHHH
Confidence 5555555 4578888666642 233332 24679999999999999999987 4579999999999999999
Q ss_pred HHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcCCCC
Q 020573 238 FNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYI 277 (324)
Q Consensus 238 ~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNPPYi 277 (324)
+|++.|++.++++++++|..+... .+.||.|++|||+.
T Consensus 148 ~N~~~n~l~~~v~~~~~D~~~~~~--~~~~D~Ii~~~p~~ 185 (260)
T d2frna1 148 ENIHLNKVEDRMSAYNMDNRDFPG--ENIADRILMGYVVR 185 (260)
T ss_dssp HHHHHTTCTTTEEEECSCTTTCCC--CSCEEEEEECCCSS
T ss_pred HHHHHhCCCceEEEEEcchHHhcc--CCCCCEEEECCCCc
Confidence 999999999999999999988654 36899999999964
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.63 E-value=5.8e-16 Score=136.65 Aligned_cols=102 Identities=21% Similarity=0.251 Sum_probs=83.4
Q ss_pred CCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEE
Q 020573 192 DGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVV 271 (324)
Q Consensus 192 ~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIV 271 (324)
+..++.+|||+|||+|.++..+++.. .+|+|+|+|+.+++.|+++++..++.+ +.++++|+.+ ++..+++||+|+
T Consensus 13 ~~~~~~rILDiGcGtG~~~~~la~~~---~~v~gvD~S~~~l~~A~~~~~~~~~~~-~~~~~~d~~~-~~~~~~~fD~v~ 87 (234)
T d1xxla_ 13 ECRAEHRVLDIGAGAGHTALAFSPYV---QECIGVDATKEMVEVASSFAQEKGVEN-VRFQQGTAES-LPFPDDSFDIIT 87 (234)
T ss_dssp TCCTTCEEEEESCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHHTCCS-EEEEECBTTB-CCSCTTCEEEEE
T ss_pred CCCCCCEEEEeCCcCcHHHHHHHHhC---CeEEEEeCChhhhhhhhhhhccccccc-cccccccccc-ccccccccceee
Confidence 34567899999999999999999863 689999999999999999999998864 9999999877 443457999999
Q ss_pred EcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 272 SNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 272 sNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
|+ .+..|-|. ...+++++.++|||||+
T Consensus 88 ~~--------------~~l~~~~d------------~~~~l~~~~r~LkpgG~ 114 (234)
T d1xxla_ 88 CR--------------YAAHHFSD------------VRKAVREVARVLKQDGR 114 (234)
T ss_dssp EE--------------SCGGGCSC------------HHHHHHHHHHHEEEEEE
T ss_pred ee--------------ceeecccC------------HHHHHHHHHHeeCCCcE
Confidence 94 22234322 23789999999999994
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.62 E-value=5.1e-16 Score=135.90 Aligned_cols=101 Identities=21% Similarity=0.165 Sum_probs=81.7
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEE
Q 020573 193 GLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVS 272 (324)
Q Consensus 193 ~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVs 272 (324)
..++.+|||+|||+|.++..+++.. .+|+|+|+|+.+++.|+++++..+.. +++++++|+.+ ++...++||+|++
T Consensus 13 l~~~~rVLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~i~~A~~~~~~~~~~-~i~~~~~d~~~-l~~~~~~fD~v~~ 87 (231)
T d1vl5a_ 13 LKGNEEVLDVATGGGHVANAFAPFV---KKVVAFDLTEDILKVARAFIEGNGHQ-QVEYVQGDAEQ-MPFTDERFHIVTC 87 (231)
T ss_dssp CCSCCEEEEETCTTCHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCC-C-CCSCTTCEEEEEE
T ss_pred CCCcCEEEEecccCcHHHHHHHHhC---CEEEEEECCHHHHhhhhhcccccccc-ccccccccccc-ccccccccccccc
Confidence 3456799999999999999999863 68999999999999999999999875 49999999987 3333579999999
Q ss_pred cCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 273 NPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 273 NPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
+ .+..|-+ ....+++++.++|||||+
T Consensus 88 ~--------------~~l~~~~------------d~~~~l~~~~r~LkpgG~ 113 (231)
T d1vl5a_ 88 R--------------IAAHHFP------------NPASFVSEAYRVLKKGGQ 113 (231)
T ss_dssp E--------------SCGGGCS------------CHHHHHHHHHHHEEEEEE
T ss_pred c--------------ccccccC------------CHHHHHHHHHHhcCCCcE
Confidence 4 2333422 234789999999999994
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=99.62 E-value=8.3e-16 Score=131.79 Aligned_cols=115 Identities=17% Similarity=0.202 Sum_probs=90.7
Q ss_pred cccCeeeeeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHH
Q 020573 157 HWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVA 236 (324)
Q Consensus 157 ~f~~l~~~v~~~vliPrp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~A 236 (324)
.|.|..+...++. .-||.|..+.+.+.+++... ..+.+|||+|||||++++.++.+ ...+|++||.|+.+++.+
T Consensus 9 ~~kg~~l~~~~~~-~~RPt~~~vre~lfn~l~~~---~~~~~vLDlfaGsG~~giealsr--Ga~~v~~VE~~~~a~~~~ 82 (183)
T d2fpoa1 9 QWRGRKLPVPDSP-GLRPTTDRVRETLFNWLAPV---IVDAQCLDCFAGSGALGLEALSR--YAAGATLIEMDRAVSQQL 82 (183)
T ss_dssp GGTTCEEECCCC-------CHHHHHHHHHHHHHH---HTTCEEEETTCTTCHHHHHHHHT--TCSEEEEECSCHHHHHHH
T ss_pred ccCCCEecCCCCC-CcCcCcHHHHHHHHhhhhcc---cchhhhhhhhccccceeeeEEec--CcceeEEEEEeechhhHH
Confidence 4677777776653 35888988888888777221 24679999999999999998886 346999999999999999
Q ss_pred HHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcCCCCC
Q 020573 237 AFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIP 278 (324)
Q Consensus 237 r~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNPPYi~ 278 (324)
++|++.++..+ ++++++|+++.+.....+||+|++||||..
T Consensus 83 k~N~~~~~~~~-~~ii~~d~~~~l~~~~~~fDlIf~DPPY~~ 123 (183)
T d2fpoa1 83 IKNLATLKAGN-ARVVNSNAMSFLAQKGTPHNIVFVDPPFRR 123 (183)
T ss_dssp HHHHHHTTCCS-EEEECSCHHHHHSSCCCCEEEEEECCSSST
T ss_pred HHHHhhccccc-eeeeeecccccccccccccCEEEEcCcccc
Confidence 99999988754 899999999877666678999999999963
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=99.61 E-value=5.1e-16 Score=144.24 Aligned_cols=109 Identities=21% Similarity=0.211 Sum_probs=89.8
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc---cCCCCeeEEE
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---DVEGKLSGVV 271 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~---~~~~~fDlIV 271 (324)
++++|||+|||+|.+++.+|+. ..+|+++|+|+.+++.|++|++.+|+.+ ++++++|.++.+. ...++||+|+
T Consensus 145 ~g~rVLDl~~gtG~~s~~~a~g---~~~V~~vD~s~~al~~a~~n~~~ngl~~-~~~i~~d~~~~~~~~~~~~~~fD~Vi 220 (318)
T d1wxxa2 145 RGERALDVFSYAGGFALHLALG---FREVVAVDSSAEALRRAEENARLNGLGN-VRVLEANAFDLLRRLEKEGERFDLVV 220 (318)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH---EEEEEEEESCHHHHHHHHHHHHHTTCTT-EEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeeeccCCCCcHHHHHHHhc---CCcEEeecchHHHHHHHHHHHHHcCCCC-cceeeccHHHHhhhhHhhhcCCCEEE
Confidence 4679999999999999999875 3799999999999999999999999964 9999999987533 2346899999
Q ss_pred EcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 272 SNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 272 sNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
+|||+...... .+ .++...+..++..+.++|||||+
T Consensus 221 ~DpP~~~~~~~-----~~------------~~~~~~~~~l~~~a~~lLkpGG~ 256 (318)
T d1wxxa2 221 LDPPAFAKGKK-----DV------------ERAYRAYKEVNLRAIKLLKEGGI 256 (318)
T ss_dssp ECCCCSCCSTT-----SH------------HHHHHHHHHHHHHHHHTEEEEEE
T ss_pred EcCCccccchH-----HH------------HHHHHHHHHHHHHHHHHcCCCCE
Confidence 99998644321 00 12356788999999999999995
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.61 E-value=1.9e-15 Score=131.52 Aligned_cols=82 Identities=20% Similarity=0.310 Sum_probs=69.2
Q ss_pred CCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEE
Q 020573 192 DGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVV 271 (324)
Q Consensus 192 ~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIV 271 (324)
....+++|||+|||+|++++.++.. ...+|+|+|+|+.+++.|++|++.++. +.++..+|..+. .++||+||
T Consensus 43 ~dl~g~~vLDlg~GtG~l~i~a~~~--g~~~v~~vdi~~~~~~~a~~N~~~~~~--~~~~~~~d~~~~----~~~fD~Vi 114 (201)
T d1wy7a1 43 GDIEGKVVADLGAGTGVLSYGALLL--GAKEVICVEVDKEAVDVLIENLGEFKG--KFKVFIGDVSEF----NSRVDIVI 114 (201)
T ss_dssp TSSTTCEEEEETCTTCHHHHHHHHT--TCSEEEEEESCHHHHHHHHHHTGGGTT--SEEEEESCGGGC----CCCCSEEE
T ss_pred CCCCCCEEEECcCcchHHHHHHHHc--CCCEEEEEcCcHHHHHHHHHHHHHcCC--CceEEECchhhh----CCcCcEEE
Confidence 3456789999999999999998875 346999999999999999999998876 489999998663 46899999
Q ss_pred EcCCCCCCCC
Q 020573 272 SNPPYIPSDD 281 (324)
Q Consensus 272 sNPPYi~~~~ 281 (324)
+||||.....
T Consensus 115 ~nPP~~~~~~ 124 (201)
T d1wy7a1 115 MNPPFGSQRK 124 (201)
T ss_dssp ECCCCSSSST
T ss_pred EcCccccccc
Confidence 9999975443
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.60 E-value=2e-15 Score=139.19 Aligned_cols=144 Identities=15% Similarity=0.084 Sum_probs=99.6
Q ss_pred cCeeeeeeCCccccc---chHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHH
Q 020573 159 RDLVLSVEEGVFIPR---PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAV 235 (324)
Q Consensus 159 ~~l~~~v~~~vliPr---p~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~ 235 (324)
.|+.|.++...+--. ++....-.++.+.+ . ...++.+|||++||||.+++.+++. +++|++||.|+.+++.
T Consensus 96 ~gl~f~v~~~~~~~tG~f~dqr~nr~~~~~~~-~--~~~~~~rVLdlf~~tG~~sl~aa~~---GA~V~~VD~s~~al~~ 169 (309)
T d2igta1 96 LGVEFLGRFTAFRHVGVFPEQIVHWEWLKNAV-E--TADRPLKVLNLFGYTGVASLVAAAA---GAEVTHVDASKKAIGW 169 (309)
T ss_dssp TTEEEEEECCSSSCCSCCGGGHHHHHHHHHHH-H--HSSSCCEEEEETCTTCHHHHHHHHT---TCEEEEECSCHHHHHH
T ss_pred eEEEEEEeccCCCccccccchhHHHHHHHHHH-h--hccCCCeEEEecCCCcHHHHHHHhC---CCeEEEEeChHHHHHH
Confidence 577787776433221 22233333333333 1 1124679999999999999999875 3699999999999999
Q ss_pred HHHHHHHcCCCC-cEEEEEccccccccc---CCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHH
Q 020573 236 AAFNAQRYGLQD-IIEIRQGSWFGKLKD---VEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHL 311 (324)
Q Consensus 236 Ar~N~~~~gl~~-rv~~~~gD~~~~l~~---~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~i 311 (324)
|++|++.|++.+ +++++++|+++.+.. ...+||+||+|||+......... .. .-+.+..+
T Consensus 170 a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~IilDPP~f~~~~~~~~-~~---------------~~~~~~~l 233 (309)
T d2igta1 170 AKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIILTDPPKFGRGTHGEV-WQ---------------LFDHLPLM 233 (309)
T ss_dssp HHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEEECCCSEEECTTCCE-EE---------------HHHHHHHH
T ss_pred HHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCCCCCEEEECCCcccccccchh-HH---------------HHHHHHHH
Confidence 999999999876 699999999886542 13689999999996532211000 00 12344567
Q ss_pred HHHHhcccCCCCC
Q 020573 312 CNGTASMLKPDKW 324 (324)
Q Consensus 312 l~~a~~~LkpgG~ 324 (324)
++.+..+|+|||.
T Consensus 234 ~~~~~~ll~~~g~ 246 (309)
T d2igta1 234 LDICREILSPKAL 246 (309)
T ss_dssp HHHHHHTBCTTCC
T ss_pred HHHHHHhcCCCCC
Confidence 7888899999884
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=99.58 E-value=2.8e-15 Score=139.18 Aligned_cols=111 Identities=13% Similarity=0.047 Sum_probs=89.8
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCC-CcEEEEEccccccccc---CCCCeeEE
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQ-DIIEIRQGSWFGKLKD---VEGKLSGV 270 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~-~rv~~~~gD~~~~l~~---~~~~fDlI 270 (324)
++++|||++||+|.+++.++.. ...+|++||+|+.+++.|++|++.|++. .+++++++|.++.+.. ..++||+|
T Consensus 144 ~g~~VLdlf~~~G~~sl~aa~~--ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~I 221 (317)
T d2b78a2 144 AGKTVLNLFSYTAAFSVAAAMG--GAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDII 221 (317)
T ss_dssp BTCEEEEETCTTTHHHHHHHHT--TBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred CCCceeecCCCCcHHHHHHHhC--CCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCCCEE
Confidence 4679999999999999988874 4468999999999999999999999985 5799999999886542 24589999
Q ss_pred EEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 271 VSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 271 VsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
|+|||....... +-.++...|.++++.+.++|+|||+
T Consensus 222 i~DPP~f~~~~~-----------------~~~~~~~~~~~L~~~a~~ll~pgG~ 258 (317)
T d2b78a2 222 IIDPPSFARNKK-----------------EVFSVSKDYHKLIRQGLEILSENGL 258 (317)
T ss_dssp EECCCCC----------------------CCCCHHHHHHHHHHHHHHTEEEEEE
T ss_pred EEcChhhccchh-----------------HHHHHHHHHHHHHHHHHHHcCCCCE
Confidence 999996532210 1124567888999999999999995
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=99.58 E-value=2.7e-15 Score=128.53 Aligned_cols=115 Identities=22% Similarity=0.248 Sum_probs=93.6
Q ss_pred cccCeeeeeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHH
Q 020573 157 HWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVA 236 (324)
Q Consensus 157 ~f~~l~~~v~~~vliPrp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~A 236 (324)
.|.|..+...++ ..-||.+..+-+.+.+++ . ....+.+|||++||||++++.++.+ ...+|++||.|+++++.+
T Consensus 7 ~~kg~~l~~~~~-~~~RPt~~~vrealFn~l-~--~~~~~~~vLDlfaGsG~~g~ea~sr--Ga~~v~~ve~~~~a~~~~ 80 (182)
T d2fhpa1 7 EYGGRRLKALDG-DNTRPTTDKVKESIFNMI-G--PYFDGGMALDLYSGSGGLAIEAVSR--GMDKSICIEKNFAALKVI 80 (182)
T ss_dssp TTTTCBCCCCCC-CSSCCCCHHHHHHHHHHH-C--SCCSSCEEEETTCTTCHHHHHHHHT--TCSEEEEEESCHHHHHHH
T ss_pred ccCCCEecCCCC-CCcCcCcHHHHHHHHHHH-H--HhcCCCEEEEcccccccccceeeec--chhHHHHHHHHHHHHHHH
Confidence 356666654443 234888888889888887 2 2245789999999999999999886 346899999999999999
Q ss_pred HHHHHHcCCCCcEEEEEccccccccc---CCCCeeEEEEcCCCC
Q 020573 237 AFNAQRYGLQDIIEIRQGSWFGKLKD---VEGKLSGVVSNPPYI 277 (324)
Q Consensus 237 r~N~~~~gl~~rv~~~~gD~~~~l~~---~~~~fDlIVsNPPYi 277 (324)
++|++.++..++++++++|+++.+.. ...+||+|+.||||.
T Consensus 81 ~~N~~~~~~~~~~~i~~~D~~~~l~~~~~~~~~fDlIflDPPY~ 124 (182)
T d2fhpa1 81 KENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLLDPPYA 124 (182)
T ss_dssp HHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECCCGG
T ss_pred HHHhhhhhcccccccccccchhhhhhhcccCCCcceEEechhhh
Confidence 99999999988899999999876542 245899999999994
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.58 E-value=1.4e-14 Score=132.79 Aligned_cols=119 Identities=16% Similarity=0.108 Sum_probs=96.9
Q ss_pred HHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccc
Q 020573 179 MVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFG 258 (324)
Q Consensus 179 lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~ 258 (324)
.++.+.+.+ ...++.+|||+|||.|.+++.+|+++ +++|+|+++|++.++.|++.++..|+.+++.+...|+..
T Consensus 49 k~~~~~~~l----~l~~G~~VLDiGCG~G~~~~~~a~~~--g~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~~ 122 (291)
T d1kpia_ 49 KRKLALDKL----NLEPGMTLLDIGCGWGSTMRHAVAEY--DVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEE 122 (291)
T ss_dssp HHHHHHHTT----CCCTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGGG
T ss_pred HHHHHHHhc----CCCCCCEEEEecCcchHHHHHHHHhc--CcceeeccchHHHHHHHHHHHHhhccchhhhhhhhcccc
Confidence 444555444 55678899999999999999999986 479999999999999999999999999999999999743
Q ss_pred ccccCCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 259 KLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 259 ~l~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
.+++||.|+|. ++..|-+. .++..|.+.++.+++.+.++|||||.
T Consensus 123 ----~~~~fD~i~si--------------e~~eH~~~---~~~~~~~~~~~~~f~~i~~~LkpgG~ 167 (291)
T d1kpia_ 123 ----FDEPVDRIVSL--------------GAFEHFAD---GAGDAGFERYDTFFKKFYNLTPDDGR 167 (291)
T ss_dssp ----CCCCCSEEEEE--------------SCGGGTTC---CSSCCSTTHHHHHHHHHHHTSCTTCE
T ss_pred ----cccccceEeec--------------hhHHhcch---hhhhhHHHHHHHHHHHHHHhCCCCCc
Confidence 24799999992 33344332 22446788999999999999999994
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.57 E-value=4.4e-15 Score=128.71 Aligned_cols=76 Identities=25% Similarity=0.341 Sum_probs=62.6
Q ss_pred CCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEE
Q 020573 192 DGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVV 271 (324)
Q Consensus 192 ~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIV 271 (324)
....+++|||+|||||.+++.++.. ...+|+|+|+++.+++.|++|+. +++++++|+.+ ..++||+||
T Consensus 45 ~dl~Gk~VLDlGcGtG~l~i~a~~~--ga~~V~~vDid~~a~~~ar~N~~------~~~~~~~D~~~----l~~~fD~Vi 112 (197)
T d1ne2a_ 45 GNIGGRSVIDAGTGNGILACGSYLL--GAESVTAFDIDPDAIETAKRNCG------GVNFMVADVSE----ISGKYDTWI 112 (197)
T ss_dssp TSSBTSEEEEETCTTCHHHHHHHHT--TBSEEEEEESCHHHHHHHHHHCT------TSEEEECCGGG----CCCCEEEEE
T ss_pred CCCCCCEEEEeCCCCcHHHHHHHHc--CCCcccccccCHHHHHHHHHccc------cccEEEEehhh----cCCcceEEE
Confidence 3456889999999999999988875 34689999999999999999953 48999999865 246899999
Q ss_pred EcCCCCCC
Q 020573 272 SNPPYIPS 279 (324)
Q Consensus 272 sNPPYi~~ 279 (324)
+||||...
T Consensus 113 ~NPPfg~~ 120 (197)
T d1ne2a_ 113 MNPPFGSV 120 (197)
T ss_dssp ECCCC---
T ss_pred eCcccchh
Confidence 99999643
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.56 E-value=5e-15 Score=132.97 Aligned_cols=100 Identities=19% Similarity=0.194 Sum_probs=85.6
Q ss_pred CCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEE
Q 020573 192 DGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVV 271 (324)
Q Consensus 192 ~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIV 271 (324)
+..++.+|||+|||||++++.+|+..+++++|+++|+++++++.|++|+++++..+++++.++|+.+.+. ++.||.|+
T Consensus 82 ~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~~~--~~~fD~V~ 159 (250)
T d1yb2a1 82 GLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFIS--DQMYDAVI 159 (250)
T ss_dssp CCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCC--SCCEEEEE
T ss_pred CCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecccc--cceeeeee
Confidence 4557889999999999999999998888899999999999999999999988777789999999988654 36899999
Q ss_pred EcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 272 SNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 272 sNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
.|.|- |. .+++++.+.|||||+
T Consensus 160 ld~p~-----------------p~--------------~~l~~~~~~LKpGG~ 181 (250)
T d1yb2a1 160 ADIPD-----------------PW--------------NHVQKIASMMKPGSV 181 (250)
T ss_dssp ECCSC-----------------GG--------------GSHHHHHHTEEEEEE
T ss_pred ecCCc-----------------hH--------------HHHHHHHHhcCCCce
Confidence 98551 11 357788899999984
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.54 E-value=3.2e-14 Score=125.78 Aligned_cols=101 Identities=22% Similarity=0.164 Sum_probs=79.8
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEc
Q 020573 194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN 273 (324)
Q Consensus 194 ~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsN 273 (324)
.+.++|||+|||+|.+++.+++. +.+|+|+|+|+.|++.|++++..+++ +++++++|+.+. + ..++||+|++.
T Consensus 40 ~~~~~iLDiGcGtG~~~~~l~~~---~~~v~gvD~s~~mi~~a~~~~~~~~~--~i~~~~~d~~~l-~-~~~~fD~I~~~ 112 (251)
T d1wzna1 40 REVRRVLDLACGTGIPTLELAER---GYEVVGLDLHEEMLRVARRKAKERNL--KIEFLQGDVLEI-A-FKNEFDAVTMF 112 (251)
T ss_dssp SCCCEEEEETCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTC--CCEEEESCGGGC-C-CCSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCccchhhccc---ceEEEEEeeccccccccccccccccc--cchheehhhhhc-c-cccccchHhhh
Confidence 34568999999999999999986 36899999999999999999998876 499999998773 3 24689999982
Q ss_pred CCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 274 PPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
. .+..|-. ......++++++++|||||+
T Consensus 113 -----~--------~~~~~~~----------~~~~~~~L~~~~~~LkpgG~ 140 (251)
T d1wzna1 113 -----F--------STIMYFD----------EEDLRKLFSKVAEALKPGGV 140 (251)
T ss_dssp -----S--------SGGGGSC----------HHHHHHHHHHHHHHEEEEEE
T ss_pred -----h--------hhhhcCC----------hHHHHHHHHHHHHHcCCCcE
Confidence 0 1111210 23455789999999999994
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.53 E-value=1.8e-14 Score=126.20 Aligned_cols=103 Identities=19% Similarity=0.152 Sum_probs=82.4
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEc
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN 273 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~-p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsN 273 (324)
++.+|||+|||+|..+..+++.+. ++.+|+|+|+|+.|++.|+++++..+...++++..+|..+. + .+.+|+|+++
T Consensus 39 ~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~-~--~~~~d~i~~~ 115 (225)
T d1im8a_ 39 ADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHV-E--IKNASMVILN 115 (225)
T ss_dssp TTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTC-C--CCSEEEEEEE
T ss_pred CCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhcc-c--cccceeeEEe
Confidence 466999999999999999998642 67899999999999999999999888888899999998763 2 2589999995
Q ss_pred CCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 274 PPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
+ +..|-+ .+....++++++++|||||+
T Consensus 116 --~------------~l~~~~----------~~d~~~~l~~i~~~LkpgG~ 142 (225)
T d1im8a_ 116 --F------------TLQFLP----------PEDRIALLTKIYEGLNPNGV 142 (225)
T ss_dssp --S------------CGGGSC----------GGGHHHHHHHHHHHEEEEEE
T ss_pred --e------------eccccC----------hhhHHHHHHHHHHhCCCCce
Confidence 1 112211 12334789999999999994
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.52 E-value=2e-14 Score=124.55 Aligned_cols=100 Identities=18% Similarity=0.095 Sum_probs=80.0
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNP 274 (324)
+..+|||+|||+|.++..+++. +.+|+|+|+|++|++.|++++...+. ++.++.+|..+ ++...++||+|+++
T Consensus 37 ~~~~ILDiGcG~G~~~~~la~~---~~~v~giD~S~~~i~~ak~~~~~~~~--~~~~~~~d~~~-l~~~~~~fD~I~~~- 109 (226)
T d1ve3a1 37 KRGKVLDLACGVGGFSFLLEDY---GFEVVGVDISEDMIRKAREYAKSRES--NVEFIVGDARK-LSFEDKTFDYVIFI- 109 (226)
T ss_dssp SCCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTC--CCEEEECCTTS-CCSCTTCEEEEEEE-
T ss_pred CCCEEEEECCCcchhhhhHhhh---hcccccccccccchhhhhhhhccccc--ccccccccccc-ccccCcCceEEEEe-
Confidence 4569999999999999999985 47999999999999999999988774 47889999877 34335799999994
Q ss_pred CCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 275 PYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
.+..|-| -..+..+++++.++|||||.
T Consensus 110 -------------~~l~~~~----------~~d~~~~l~~i~~~LkpgG~ 136 (226)
T d1ve3a1 110 -------------DSIVHFE----------PLELNQVFKEVRRVLKPSGK 136 (226)
T ss_dssp -------------SCGGGCC----------HHHHHHHHHHHHHHEEEEEE
T ss_pred -------------cchhhCC----------hhHHHHHHHHHHHHcCcCcE
Confidence 2233322 12355789999999999994
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.52 E-value=2.6e-14 Score=126.61 Aligned_cols=101 Identities=16% Similarity=0.103 Sum_probs=80.3
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNP 274 (324)
.+++|||+|||+|.++..+++.. .+|+|+|+|+.|++.|++++...++ +++++++|+.+.. ..++||+|+|.
T Consensus 37 ~~~~vLDiGCG~G~~~~~l~~~g---~~v~GvD~S~~ml~~A~~~~~~~~~--~v~~~~~d~~~~~--~~~~fD~i~~~- 108 (246)
T d1y8ca_ 37 VFDDYLDLACGTGNLTENLCPKF---KNTWAVDLSQEMLSEAENKFRSQGL--KPRLACQDISNLN--INRKFDLITCC- 108 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGGS---SEEEEECSCHHHHHHHHHHHHHTTC--CCEEECCCGGGCC--CSCCEEEEEEC-
T ss_pred CCCeEEEEeCcCCHHHHHHHHhC---CccEeeccchhhhhhccccccccCc--cceeeccchhhhc--cccccccccee-
Confidence 45799999999999999999863 6899999999999999999988876 4999999998742 24689999982
Q ss_pred CCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 275 PYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
..+..|-+. .+....+++.++++|||||+
T Consensus 109 ------------~~~~~~~~~---------~~~~~~~l~~~~~~LkpgG~ 137 (246)
T d1y8ca_ 109 ------------LDSTNYIID---------SDDLKKYFKAVSNHLKEGGV 137 (246)
T ss_dssp ------------TTGGGGCCS---------HHHHHHHHHHHHTTEEEEEE
T ss_pred ------------eeeeeccCC---------HHHHHHHHHHHHHhCCCCeE
Confidence 011122111 34566899999999999994
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.52 E-value=3e-14 Score=122.50 Aligned_cols=100 Identities=19% Similarity=0.145 Sum_probs=82.0
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNP 274 (324)
.+++|||+|||+|..+..++++ +.+|+|+|+|+.+++.|+++++..++.+ +++..+|+.+... .++||+|+++-
T Consensus 30 ~~grvLDiGcG~G~~~~~la~~---g~~v~gvD~s~~~l~~a~~~~~~~~~~~-~~~~~~d~~~~~~--~~~fD~I~~~~ 103 (198)
T d2i6ga1 30 APGRTLDLGCGNGRNSLYLAAN---GYDVTAWDKNPASMANLERIKAAEGLDN-LQTDLVDLNTLTF--DGEYDFILSTV 103 (198)
T ss_dssp CSCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTCTT-EEEEECCTTTCCC--CCCEEEEEEES
T ss_pred CCCcEEEECCCCCHHHHHHHHH---hhhhccccCcHHHHHHHHHHhhhccccc-hhhhheecccccc--cccccEEEEee
Confidence 4569999999999999999986 3799999999999999999999999864 9999999877433 47899999964
Q ss_pred CCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 275 PYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
.+ .|-|.. ....+++++.++|+|||+
T Consensus 104 ~~--------------~~~~~~----------~~~~~l~~~~~~L~pgG~ 129 (198)
T d2i6ga1 104 VM--------------MFLEAQ----------TIPGLIANMQRCTKPGGY 129 (198)
T ss_dssp CG--------------GGSCTT----------HHHHHHHHHHHTEEEEEE
T ss_pred ee--------------ecCCHH----------HHHHHHHHHHHHcCCCcE
Confidence 43 332221 234789999999999984
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=99.51 E-value=7.8e-14 Score=130.59 Aligned_cols=123 Identities=20% Similarity=0.242 Sum_probs=101.3
Q ss_pred CceeEEecccc---cCeeeeeeCCccccc--chHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcE
Q 020573 148 PFQYLVGCEHW---RDLVLSVEEGVFIPR--PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGS 222 (324)
Q Consensus 148 pl~yi~g~~~f---~~l~~~v~~~vliPr--p~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~ 222 (324)
.+..+.|+..| .|+.|.++++.|++- ...+.+++.+.+++ ...++.+|+|++||+|.|++.||+.+ .+
T Consensus 164 ~~~~~~g~~~~~~~~g~~~~i~p~sFfQ~N~~~~e~l~~~v~~~~----~~~~~~~vlDLycG~G~fsl~La~~~---~~ 236 (358)
T d1uwva2 164 ILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWL----DVQPEDRVLDLFCGMGNFTLPLATQA---AS 236 (358)
T ss_dssp CCEEEECCCCEEEETTEEEECCSSSCCCSBHHHHHHHHHHHHHHH----TCCTTCEEEEESCTTTTTHHHHHTTS---SE
T ss_pred eEEeecCCceEEecCCEEEEECCchhhccchhhhhHHHHHHHHhh----ccCCCceEEEecccccccchhccccc---cE
Confidence 44455554433 468899999999983 67889999999988 33356789999999999999999864 79
Q ss_pred EEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccC---CCCeeEEEEcCCCCC
Q 020573 223 IIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDV---EGKLSGVVSNPPYIP 278 (324)
Q Consensus 223 V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~---~~~fDlIVsNPPYi~ 278 (324)
|+|+|+++.+++.|++|++.+|+.+ ++|+.+|..+.+... ..++|+||.|||--.
T Consensus 237 V~gvE~~~~ai~~A~~na~~n~i~n-~~~~~~~~~~~~~~~~~~~~~~d~vilDPPR~G 294 (358)
T d1uwva2 237 VVGVEGVPALVEKGQQNARLNGLQN-VTFYHENLEEDVTKQPWAKNGFDKVLLDPARAG 294 (358)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCCS-EEEEECCTTSCCSSSGGGTTCCSEEEECCCTTC
T ss_pred EEeccCcHHHHHHHHHhHHhccccc-ceeeecchhhhhhhhhhhhccCceEEeCCCCcc
Confidence 9999999999999999999999975 999999988765432 357999999999754
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.51 E-value=2.6e-14 Score=127.51 Aligned_cols=106 Identities=19% Similarity=0.185 Sum_probs=83.8
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNP 274 (324)
++.+|||+|||+|..+..+++. ...+|+|+|+|+.|++.|++.++..+...++.+.++|.........++||+|+++
T Consensus 24 ~~~~VLDlGCG~G~~~~~~~~~--~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~~fD~V~~~- 100 (252)
T d1ri5a_ 24 RGDSVLDLGCGKGGDLLKYERA--GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQ- 100 (252)
T ss_dssp TTCEEEEETCTTTTTHHHHHHH--TCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEE-
T ss_pred CcCEEEEecccCcHHHHHHHHc--CCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccccccceEEEEc-
Confidence 4679999999999999999886 3468999999999999999999888877789999999875433335689999994
Q ss_pred CCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 275 PYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
.+..|-+. .-+.++.+++.+.++|||||+
T Consensus 101 -------------~~l~~~~~--------~~~~~~~~l~~i~~~Lk~gG~ 129 (252)
T d1ri5a_ 101 -------------FSFHYAFS--------TSESLDIAQRNIARHLRPGGY 129 (252)
T ss_dssp -------------SCGGGGGS--------SHHHHHHHHHHHHHTEEEEEE
T ss_pred -------------ceeeecCC--------CHHHHHHHHHHHhceeCCCCE
Confidence 12222111 134566899999999999995
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.51 E-value=7.6e-14 Score=127.14 Aligned_cols=103 Identities=14% Similarity=0.107 Sum_probs=85.8
Q ss_pred CCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEE
Q 020573 192 DGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVV 271 (324)
Q Consensus 192 ~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIV 271 (324)
...++.+|||+|||+|.++..+++.. +++|+|+|+|+++++.|++.++..++.+++.+...|..+. .++||.|+
T Consensus 49 ~l~~g~~VLDiGCG~G~~a~~~a~~~--g~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~----~~~fD~i~ 122 (280)
T d2fk8a1 49 DLKPGMTLLDIGCGWGTTMRRAVERF--DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF----AEPVDRIV 122 (280)
T ss_dssp CCCTTCEEEEESCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGC----CCCCSEEE
T ss_pred CCCCCCEEEEecCCchHHHHHHHHhC--ceeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhh----ccchhhhh
Confidence 55678899999999999999999885 4799999999999999999999999988899999887542 46899999
Q ss_pred EcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 272 SNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 272 sNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
+ -++..|-+. ..+..+++++.++|||||.
T Consensus 123 s--------------i~~~eh~~~----------~~~~~~f~~i~~~LkpgG~ 151 (280)
T d2fk8a1 123 S--------------IEAFEHFGH----------ENYDDFFKRCFNIMPADGR 151 (280)
T ss_dssp E--------------ESCGGGTCG----------GGHHHHHHHHHHHSCTTCE
T ss_pred H--------------hhHHHHhhh----------hhHHHHHHHHHhccCCCce
Confidence 9 233344322 3456899999999999994
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.48 E-value=7.1e-14 Score=126.23 Aligned_cols=101 Identities=18% Similarity=0.232 Sum_probs=83.6
Q ss_pred CCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHc--CCCCcEEEEEcccccccccCCCCeeE
Q 020573 192 DGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRY--GLQDIIEIRQGSWFGKLKDVEGKLSG 269 (324)
Q Consensus 192 ~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~--gl~~rv~~~~gD~~~~l~~~~~~fDl 269 (324)
+..++.+|||+|||||++++.||+..+|+++|+++|+++++++.|++|++.. +..+++.+.++|..+. ...++.||.
T Consensus 93 ~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~-~~~~~~fDa 171 (264)
T d1i9ga_ 93 DIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADS-ELPDGSVDR 171 (264)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGC-CCCTTCEEE
T ss_pred CCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEecccccc-cccCCCcce
Confidence 4557889999999999999999999989999999999999999999999875 4456799999998763 222578999
Q ss_pred EEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 270 VVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 270 IVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
|+.|-| +|. .+++++.+.|||||+
T Consensus 172 V~ldlp-----------------~P~--------------~~l~~~~~~LkpGG~ 195 (264)
T d1i9ga_ 172 AVLDML-----------------APW--------------EVLDAVSRLLVAGGV 195 (264)
T ss_dssp EEEESS-----------------CGG--------------GGHHHHHHHEEEEEE
T ss_pred EEEecC-----------------CHH--------------HHHHHHHhccCCCCE
Confidence 998633 222 357788899999984
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.48 E-value=5.8e-14 Score=122.89 Aligned_cols=90 Identities=18% Similarity=0.286 Sum_probs=75.6
Q ss_pred HHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccc
Q 020573 178 LMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWF 257 (324)
Q Consensus 178 ~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~ 257 (324)
.++..+++.+ ...++.+|||+|||+|.++..+|+.++++++|+++|+++++++.|++|++..++.+ +.++++|..
T Consensus 62 ~~~a~~l~~l----~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n-~~~~~~d~~ 136 (213)
T d1dl5a1 62 SLMALFMEWV----GLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIEN-VIFVCGDGY 136 (213)
T ss_dssp HHHHHHHHHT----TCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCS-EEEEESCGG
T ss_pred hhhHHHHHhh----hccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccc-cccccCchH
Confidence 3444555555 34567899999999999999999988788999999999999999999999999865 899999988
Q ss_pred cccccCCCCeeEEEEc
Q 020573 258 GKLKDVEGKLSGVVSN 273 (324)
Q Consensus 258 ~~l~~~~~~fDlIVsN 273 (324)
+.... .++||+|+++
T Consensus 137 ~~~~~-~~~fD~I~~~ 151 (213)
T d1dl5a1 137 YGVPE-FSPYDVIFVT 151 (213)
T ss_dssp GCCGG-GCCEEEEEEC
T ss_pred Hcccc-ccchhhhhhh
Confidence 75543 4689999996
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.47 E-value=7.3e-14 Score=126.37 Aligned_cols=100 Identities=23% Similarity=0.333 Sum_probs=85.5
Q ss_pred CCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEE
Q 020573 192 DGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVV 271 (324)
Q Consensus 192 ~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIV 271 (324)
+..++.+|||+|||||.+++.+|+..+++++|+++|+++++++.|++|++++++.+++.+..+|..+.+.. ..||.|+
T Consensus 100 ~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~~~~~--~~~D~V~ 177 (266)
T d1o54a_ 100 DVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDE--KDVDALF 177 (266)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSC--CSEEEEE
T ss_pred CCCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEeccccccccc--cceeeeE
Confidence 45578899999999999999999998888999999999999999999999999988899999998665543 6799999
Q ss_pred EcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 272 SNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 272 sNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
.+-| +|. .+++++.++|||||.
T Consensus 178 ~d~p-----------------~p~--------------~~l~~~~~~LKpGG~ 199 (266)
T d1o54a_ 178 LDVP-----------------DPW--------------NYIDKCWEALKGGGR 199 (266)
T ss_dssp ECCS-----------------CGG--------------GTHHHHHHHEEEEEE
T ss_pred ecCC-----------------CHH--------------HHHHHHHhhcCCCCE
Confidence 8644 121 357888999999984
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.47 E-value=4.3e-14 Score=128.50 Aligned_cols=101 Identities=14% Similarity=0.045 Sum_probs=81.8
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEc
Q 020573 194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN 273 (324)
Q Consensus 194 ~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsN 273 (324)
.++.+|||+|||+|.++..+++.++.+.+|+|+|+|+.+++.|++|+...+. +++|.++|+.+. + ..++||+|+++
T Consensus 26 ~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~--~~~f~~~d~~~~-~-~~~~fD~v~~~ 101 (281)
T d2gh1a1 26 TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY--DSEFLEGDATEI-E-LNDKYDIAICH 101 (281)
T ss_dssp CSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSS--EEEEEESCTTTC-C-CSSCEEEEEEE
T ss_pred CCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccc--cccccccccccc-c-ccCCceEEEEe
Confidence 3567999999999999999999875568999999999999999999988775 499999998763 2 24689999996
Q ss_pred CCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 274 PPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
.+..|-+. ...+++++.++|||||+
T Consensus 102 --------------~~l~~~~d------------~~~~l~~~~~~LkpgG~ 126 (281)
T d2gh1a1 102 --------------AFLLHMTT------------PETMLQKMIHSVKKGGK 126 (281)
T ss_dssp --------------SCGGGCSS------------HHHHHHHHHHTEEEEEE
T ss_pred --------------hhhhcCCC------------HHHHHHHHHHHcCcCcE
Confidence 22233221 23688999999999994
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.47 E-value=2.7e-13 Score=123.72 Aligned_cols=103 Identities=13% Similarity=0.043 Sum_probs=85.8
Q ss_pred CCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEE
Q 020573 192 DGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVV 271 (324)
Q Consensus 192 ~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIV 271 (324)
...++.+|||+|||.|.+++.+|+.. +++|+|+++|++.++.|++.+++.|+.+++++..+|+.+. +++||.|+
T Consensus 59 ~l~~G~~VLDiGCG~G~~a~~~a~~~--g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~----~~~fD~i~ 132 (285)
T d1kpga_ 59 GLQPGMTLLDVGCGWGATMMRAVEKY--DVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQF----DEPVDRIV 132 (285)
T ss_dssp TCCTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGC----CCCCSEEE
T ss_pred CCCCCCEEEEecCcchHHHHHHHhcC--CcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhcc----ccccccee
Confidence 55678899999999999999999986 4899999999999999999999999999999999998542 36899999
Q ss_pred EcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 272 SNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 272 sNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
+- ++..|-. ...++.+++++.++|||||.
T Consensus 133 si--------------~~~eh~~----------~~~~~~~~~~~~r~LkpgG~ 161 (285)
T d1kpga_ 133 SI--------------GAFEHFG----------HERYDAFFSLAHRLLPADGV 161 (285)
T ss_dssp EE--------------SCGGGTC----------TTTHHHHHHHHHHHSCTTCE
T ss_pred ee--------------hhhhhcC----------chhHHHHHHHHHhhcCCCCc
Confidence 92 2223311 13355789999999999994
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.46 E-value=5.2e-14 Score=123.14 Aligned_cols=103 Identities=15% Similarity=0.026 Sum_probs=81.0
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEc
Q 020573 194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN 273 (324)
Q Consensus 194 ~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsN 273 (324)
....+|||+|||+|.++..+++.. ..+|+|+|+|++|++.|++++...+.. +++|+++|+.+. ....++||+|+++
T Consensus 59 ~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~l~~ak~~~~~~~~~-~~~f~~~d~~~~-~~~~~~fD~I~~~ 134 (222)
T d2ex4a1 59 TGTSCALDCGAGIGRITKRLLLPL--FREVDMVDITEDFLVQAKTYLGEEGKR-VRNYFCCGLQDF-TPEPDSYDVIWIQ 134 (222)
T ss_dssp CCCSEEEEETCTTTHHHHHTTTTT--CSEEEEEESCHHHHHHHHHHTGGGGGG-EEEEEECCGGGC-CCCSSCEEEEEEE
T ss_pred CCCCEEEEeccCCCHhhHHHHHhc--CCEEEEeecCHHHhhcccccccccccc-cccccccccccc-ccccccccccccc
Confidence 345789999999999999887653 368999999999999999999887764 489999999874 3335799999994
Q ss_pred CCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 274 PPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
.+..|-|. +....+++++.+.|||||+
T Consensus 135 --------------~~l~h~~~----------~~~~~~l~~i~~~Lk~~G~ 161 (222)
T d2ex4a1 135 --------------WVIGHLTD----------QHLAEFLRRCKGSLRPNGI 161 (222)
T ss_dssp --------------SCGGGSCH----------HHHHHHHHHHHHHEEEEEE
T ss_pred --------------cccccchh----------hhhhhHHHHHHHhcCCcce
Confidence 22333321 2345789999999999984
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.46 E-value=3.8e-14 Score=119.79 Aligned_cols=106 Identities=10% Similarity=-0.020 Sum_probs=79.9
Q ss_pred CCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCC-----------CCcEEEEEccccccc
Q 020573 192 DGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGL-----------QDIIEIRQGSWFGKL 260 (324)
Q Consensus 192 ~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl-----------~~rv~~~~gD~~~~l 260 (324)
...++.+|||+|||+|..++.||++ +.+|+|+|+|+.|++.|+++++..+. ...+.++++|+++..
T Consensus 17 ~~~~~~rvLd~GCG~G~~a~~la~~---G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~ 93 (201)
T d1pjza_ 17 NVVPGARVLVPLCGKSQDMSWLSGQ---GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALT 93 (201)
T ss_dssp CCCTTCEEEETTTCCSHHHHHHHHH---CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSST
T ss_pred CCCCCCEEEEecCcCCHHHHHHHHc---CCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecccccccc
Confidence 3446789999999999999999986 48999999999999999998865432 123678889888754
Q ss_pred ccCCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 261 KDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 261 ~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
......||+|++. .+..|-+ .+....+++.+.++|||||.
T Consensus 94 ~~~~~~~D~i~~~--------------~~l~~l~----------~~~~~~~~~~i~~~LkpgG~ 133 (201)
T d1pjza_ 94 ARDIGHCAAFYDR--------------AAMIALP----------ADMRERYVQHLEALMPQACS 133 (201)
T ss_dssp HHHHHSEEEEEEE--------------SCGGGSC----------HHHHHHHHHHHHHHSCSEEE
T ss_pred cccccceeEEEEE--------------eeeEecc----------hhhhHHHHHHHHHhcCCCcE
Confidence 3333589999983 1112211 23456789999999999984
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.45 E-value=1.5e-13 Score=121.30 Aligned_cols=112 Identities=17% Similarity=0.202 Sum_probs=87.4
Q ss_pred ccccCeeeeeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHH
Q 020573 156 EHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAV 235 (324)
Q Consensus 156 ~~f~~l~~~v~~~vliPrp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~ 235 (324)
..|.+..+.+..+..+..|.. +-.+++.+ . ....++.+|||+|||+|+.+..+|+..++.++|+++|+++++++.
T Consensus 42 ~aY~D~~l~i~~~~~is~P~~---~a~~le~L-~-~~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~ 116 (224)
T d1i1na_ 42 NPYMDSPQSIGFQATISAPHM---HAYALELL-F-DQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDD 116 (224)
T ss_dssp CTTSSSCEEEETTEEECCHHH---HHHHHHHT-T-TTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHH
T ss_pred ccCCCCCccccchhhhhhhHH---HHHHHHHH-h-hccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHH
Confidence 345677777788888877643 33444443 1 123457799999999999999999988788999999999999999
Q ss_pred HHHHHHHcCCC----CcEEEEEcccccccccCCCCeeEEEEc
Q 020573 236 AAFNAQRYGLQ----DIIEIRQGSWFGKLKDVEGKLSGVVSN 273 (324)
Q Consensus 236 Ar~N~~~~gl~----~rv~~~~gD~~~~l~~~~~~fDlIVsN 273 (324)
|++|+++.++. +++.+..+|..+.... .+.||+|+++
T Consensus 117 a~~~l~~~~~~~~~~~~~~~~~gD~~~~~~~-~~~fD~I~~~ 157 (224)
T d1i1na_ 117 SVNNVRKDDPTLLSSGRVQLVVGDGRMGYAE-EAPYDAIHVG 157 (224)
T ss_dssp HHHHHHHHCTHHHHTSSEEEEESCGGGCCGG-GCCEEEEEEC
T ss_pred HHHhccccCcccccccceEEEEeecccccch-hhhhhhhhhh
Confidence 99999987653 4699999998875544 4689999996
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.44 E-value=2.1e-13 Score=121.81 Aligned_cols=101 Identities=22% Similarity=0.274 Sum_probs=83.6
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNP 274 (324)
..++|||+|||+|.+++.+++++ |+.+++++|+ +++++.|++++...++.++++++.+|+++..+ .+||+|+++
T Consensus 80 ~~~~VLDvGcG~G~~~~~la~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~~~---~~~D~v~~~- 153 (253)
T d1tw3a2 80 NVRHVLDVGGGKGGFAAAIARRA-PHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEPLP---RKADAIILS- 153 (253)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSCCS---SCEEEEEEE-
T ss_pred cCCEEEEeCCCCCHHHHHHHHhc-ceeEEEEccC-HHHHHHHHHHHHHhhcccchhhccccchhhcc---cchhheeec-
Confidence 45699999999999999999996 8899999998 67999999999999999999999999987543 479999984
Q ss_pred CCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 275 PYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
.+.+|-| -+....+++++.+.|||||.
T Consensus 154 -------------~vlh~~~----------d~~~~~~L~~~~~~LkPGG~ 180 (253)
T d1tw3a2 154 -------------FVLLNWP----------DHDAVRILTRCAEALEPGGR 180 (253)
T ss_dssp -------------SCGGGSC----------HHHHHHHHHHHHHTEEEEEE
T ss_pred -------------cccccCC----------chhhHHHHHHHHHhcCCCcE
Confidence 2222222 12334789999999999994
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=99.44 E-value=2e-13 Score=116.70 Aligned_cols=115 Identities=19% Similarity=0.206 Sum_probs=85.6
Q ss_pred cccCeeeeeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHH
Q 020573 157 HWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVA 236 (324)
Q Consensus 157 ~f~~l~~~v~~~vliPrp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~A 236 (324)
.|.|..+.+..+. .-||.+..+-+.+.+++... ..+.+|||++||||++++.++.+ ...+|+.||.+..+++..
T Consensus 9 ~~kg~~l~~~~~~-~~RPt~~~vrealFn~l~~~---~~~~~vLDlFaGsG~~glEalSR--GA~~v~fVE~~~~a~~~i 82 (183)
T d2ifta1 9 LWRGRKLPVLNSE-GLRPTGDRVKETLFNWLMPY---IHQSECLDGFAGSGSLGFEALSR--QAKKVTFLELDKTVANQL 82 (183)
T ss_dssp TTTTCEEECC----------CHHHHHHHHHHHHH---HTTCEEEETTCTTCHHHHHHHHT--TCSEEEEECSCHHHHHHH
T ss_pred ccCCCEecCCCCC-CcCcCcHHHHHHHHHHhhhh---cccceEeecccCccceeeeeeee--cceeeEEeecccchhhhH
Confidence 4677888766554 35888888888888877221 24569999999999999999987 456999999999999999
Q ss_pred HHHHHHcCCCC-cEEEEEccccccccc--CCCCeeEEEEcCCCC
Q 020573 237 AFNAQRYGLQD-IIEIRQGSWFGKLKD--VEGKLSGVVSNPPYI 277 (324)
Q Consensus 237 r~N~~~~gl~~-rv~~~~gD~~~~l~~--~~~~fDlIVsNPPYi 277 (324)
++|++..+..+ ...++..|..+.+.. ...+||+|++||||.
T Consensus 83 k~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~~~~fDlIFlDPPY~ 126 (183)
T d2ifta1 83 KKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLDPPFH 126 (183)
T ss_dssp HHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEECCCSS
T ss_pred hhHHhhhcccccccccccccccccccccccCCcccEEEechhHh
Confidence 99999998755 577888887665432 235799999999995
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.43 E-value=3.2e-13 Score=125.28 Aligned_cols=102 Identities=18% Similarity=0.230 Sum_probs=80.2
Q ss_pred CCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHc----------CCCCcEEEEEcccccccc
Q 020573 192 DGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRY----------GLQDIIEIRQGSWFGKLK 261 (324)
Q Consensus 192 ~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~----------gl~~rv~~~~gD~~~~l~ 261 (324)
+..++.+|||+|||+|++++.||+..+++++|+++|+++++++.|++|+++. +..+++.+.++|+.+...
T Consensus 95 ~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di~~~~~ 174 (324)
T d2b25a1 95 DINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATE 174 (324)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC-
T ss_pred CCCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecchhhccc
Confidence 4457889999999999999999999989999999999999999999999875 334679999999876433
Q ss_pred cC-CCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 262 DV-EGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 262 ~~-~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
.. .+.||.|+.+-| +|. .++.++.++|||||+
T Consensus 175 ~~~~~~fD~V~LD~p-----------------~P~--------------~~l~~~~~~LKpGG~ 207 (324)
T d2b25a1 175 DIKSLTFDAVALDML-----------------NPH--------------VTLPVFYPHLKHGGV 207 (324)
T ss_dssp ------EEEEEECSS-----------------STT--------------TTHHHHGGGEEEEEE
T ss_pred ccCCCCcceEeecCc-----------------CHH--------------HHHHHHHHhccCCCE
Confidence 22 357999998643 122 247788899999984
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=99.42 E-value=7.5e-14 Score=121.18 Aligned_cols=136 Identities=18% Similarity=0.191 Sum_probs=93.0
Q ss_pred cccccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCc
Q 020573 169 VFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDI 248 (324)
Q Consensus 169 vliPrp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~r 248 (324)
|+.|++.++++++.+. ...+.+|||+|||+|.++..+.+.......++|+|+++.++.+ ..+
T Consensus 1 v~TP~~i~~~m~~l~~--------~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~----------~~~ 62 (223)
T d2ih2a1 1 VETPPEVVDFMVSLAE--------APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDL----------PPW 62 (223)
T ss_dssp CCCCHHHHHHHHHHCC--------CCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCC----------CTT
T ss_pred CCCCHHHHHHHHHhcC--------CCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhh----------ccc
Confidence 5678777666666432 2346799999999999999998876566789999999876543 234
Q ss_pred EEEEEcccccccccCCCCeeEEEEcCCCCCCCCcccchhhhhcc--ccc-ccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 249 IEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKH--EPR-LALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 249 v~~~~gD~~~~l~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~--eP~-~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
..++++|++.... ..+||+|++||||................ ... .......+..+.+..+++.+.++||+||+
T Consensus 63 ~~~~~~~~~~~~~--~~~fd~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~ 139 (223)
T d2ih2a1 63 AEGILADFLLWEP--GEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGV 139 (223)
T ss_dssp EEEEESCGGGCCC--SSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEE
T ss_pred ceeeeeehhcccc--ccccceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCc
Confidence 6888999887543 36899999999998654433221111000 000 11122334456778899999999999984
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.40 E-value=3.3e-13 Score=118.62 Aligned_cols=116 Identities=13% Similarity=-0.003 Sum_probs=85.2
Q ss_pred HHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcC-------------
Q 020573 178 LMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYG------------- 244 (324)
Q Consensus 178 ~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~g------------- 244 (324)
.+++.+...+ ...++.+|||+|||+|..++.||+. +.+|+|+|+|+.|++.|+++.....
T Consensus 32 ~l~~~~~~~l----~~~~~~rvLd~GCG~G~~a~~LA~~---G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~ 104 (229)
T d2bzga1 32 LLKKHLDTFL----KGKSGLRVFFPLCGKAVEMKWFADR---GHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKV 104 (229)
T ss_dssp HHHHHHHHHH----TTCCSCEEEETTCTTCTHHHHHHHT---TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEE
T ss_pred HHHHHHHHhc----CCCCCCEEEEeCCCCcHHHHHHHhC---CCcEEEEeCCHHHHHHHHHHhhccccccchhcccccce
Confidence 4556555554 2335679999999999999999985 4799999999999999998765321
Q ss_pred ---CCCcEEEEEcccccccccCCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCC
Q 020573 245 ---LQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKP 321 (324)
Q Consensus 245 ---l~~rv~~~~gD~~~~l~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~Lkp 321 (324)
...+++++++|+++......+.||+|+.. ..+..+.++ ..+.+++.+.++|||
T Consensus 105 ~~~~~~~v~~~~~d~~~l~~~~~~~fd~i~~~------~~l~~~~~~------------------~r~~~~~~~~~~Lkp 160 (229)
T d2bzga1 105 FKSSSGNISLYCCSIFDLPRTNIGKFDMIWDR------GALVAINPG------------------DRKCYADTMFSLLGK 160 (229)
T ss_dssp EEETTSSEEEEESCGGGGGGSCCCCEEEEEES------SSTTTSCGG------------------GHHHHHHHHHHTEEE
T ss_pred eeecCCcEEEEEcchhhccccccCceeEEEEE------EEEEeccch------------------hhHHHHHHHHhhcCC
Confidence 12469999999988655556789999973 222222222 234678899999999
Q ss_pred CCC
Q 020573 322 DKW 324 (324)
Q Consensus 322 gG~ 324 (324)
||.
T Consensus 161 gG~ 163 (229)
T d2bzga1 161 KFQ 163 (229)
T ss_dssp EEE
T ss_pred cce
Confidence 994
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.37 E-value=8.5e-13 Score=120.00 Aligned_cols=108 Identities=17% Similarity=0.097 Sum_probs=78.6
Q ss_pred CCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCC---cEEEEEcccccccc--cCCCCeeEE
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQD---IIEIRQGSWFGKLK--DVEGKLSGV 270 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~---rv~~~~gD~~~~l~--~~~~~fDlI 270 (324)
+.+|||+|||+|.+++.+++. +.+|+|+|+|++|++.|+++....+... +..+...++..... ...++||.|
T Consensus 57 ~~~vLD~GcG~G~~~~~la~~---g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~v 133 (292)
T d1xvaa_ 57 CHRVLDVACGTGVDSIMLVEE---GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAV 133 (292)
T ss_dssp CCEEEESSCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEEE
T ss_pred CCEEEEecCCCcHHHHHHHHc---CCeeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccCCCCCceEE
Confidence 569999999999999999986 3699999999999999999998776532 34566677654211 124689999
Q ss_pred EEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 271 VSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 271 VsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
++- ..+..|-|. .....+..+.+++++.++|||||+
T Consensus 134 ~~~-------------~~~~~~~~~-----~~~~~~~~~~~l~~~~~~LkpgG~ 169 (292)
T d1xvaa_ 134 ICL-------------GNSFAHLPD-----SKGDQSEHRLALKNIASMVRPGGL 169 (292)
T ss_dssp EEC-------------SSCGGGSCC-----TTSSSHHHHHHHHHHHHTEEEEEE
T ss_pred EEe-------------cCchhhcCC-----cccChHHHHHHHHHHHHHcCcCcE
Confidence 982 011123221 122356677899999999999995
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.36 E-value=8.2e-13 Score=115.56 Aligned_cols=94 Identities=17% Similarity=0.104 Sum_probs=71.8
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNP 274 (324)
.+.+|||+|||+|.++..+++. +.+|+|+|+|+.|++.|++|. . ..++++|..+ ++...++||+|++.
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~l~~a~~~~----~---~~~~~~~~~~-l~~~~~~fD~ii~~- 109 (246)
T d2avna1 42 NPCRVLDLGGGTGKWSLFLQER---GFEVVLVDPSKEMLEVAREKG----V---KNVVEAKAED-LPFPSGAFEAVLAL- 109 (246)
T ss_dssp SCCEEEEETCTTCHHHHHHHTT---TCEEEEEESCHHHHHHHHHHT----C---SCEEECCTTS-CCSCTTCEEEEEEC-
T ss_pred CCCEEEEECCCCchhccccccc---ceEEEEeeccccccccccccc----c---cccccccccc-cccccccccceeee-
Confidence 4569999999999999999885 479999999999999999862 2 2356788766 44445799999983
Q ss_pred CCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 275 PYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
..+..|-|. ...+++++.++|||||+
T Consensus 110 ------------~~~~~~~~d------------~~~~l~~i~r~Lk~gG~ 135 (246)
T d2avna1 110 ------------GDVLSYVEN------------KDKAFSEIRRVLVPDGL 135 (246)
T ss_dssp ------------SSHHHHCSC------------HHHHHHHHHHHEEEEEE
T ss_pred ------------cchhhhhhh------------HHHHHHHHHhhcCcCcE
Confidence 123344332 23678999999999994
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.35 E-value=1.8e-12 Score=119.04 Aligned_cols=104 Identities=16% Similarity=0.102 Sum_probs=78.7
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEc
Q 020573 194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN 273 (324)
Q Consensus 194 ~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsN 273 (324)
.++++|||+|||+|.+++.+|+. ...+|+|+|.|+.+. .|++++.+++..+++.++++|..+. ....++||+|+++
T Consensus 34 ~~~~~VLDiGcG~G~lsl~aa~~--Ga~~V~aid~s~~~~-~a~~~~~~~~~~~~i~~~~~~~~~l-~~~~~~~D~Ivse 109 (311)
T d2fyta1 34 FKDKVVLDVGCGTGILSMFAAKA--GAKKVLGVDQSEILY-QAMDIIRLNKLEDTITLIKGKIEEV-HLPVEKVDVIISE 109 (311)
T ss_dssp TTTCEEEEETCTTSHHHHHHHHT--TCSEEEEEESSTHHH-HHHHHHHHTTCTTTEEEEESCTTTS-CCSCSCEEEEEEC
T ss_pred CCcCEEEEECCCCCHHHHHHHHc--CCCEEEEEeCHHHHH-HHHHHHHHhCCCccceEEEeeHHHh-cCccccceEEEEe
Confidence 45779999999999999999986 236999999999875 5777788888888999999998873 3334699999998
Q ss_pred CCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 274 PPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
+...-.. + -..+..++....++|||||.
T Consensus 110 ~~~~~~~-----------~------------e~~~~~~~~a~~~~Lkp~G~ 137 (311)
T d2fyta1 110 WMGYFLL-----------F------------ESMLDSVLYAKNKYLAKGGS 137 (311)
T ss_dssp CCBTTBT-----------T------------TCHHHHHHHHHHHHEEEEEE
T ss_pred eeeeecc-----------c------------ccccHHHHHHHHhcCCCCcE
Confidence 6543110 0 11233556666789999984
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.35 E-value=8.1e-13 Score=116.33 Aligned_cols=105 Identities=16% Similarity=0.155 Sum_probs=79.5
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccccc-CCCCeeEEEEc
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKD-VEGKLSGVVSN 273 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~-~~~~fDlIVsN 273 (324)
.+++|||+|||+|..+..+++. ...+|+|+|+|+.+++.|+++....+ .++.++.+++...... ..++||.|+.+
T Consensus 53 ~g~~VLdIGcG~G~~a~~~a~~--~~~~v~~id~s~~~~~~a~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~fD~i~fD 128 (229)
T d1zx0a1 53 KGGRVLEVGFGMAIAASKVQEA--PIDEHWIIECNDGVFQRLRDWAPRQT--HKVIPLKGLWEDVAPTLPDGHFDGILYD 128 (229)
T ss_dssp TCEEEEEECCTTSHHHHHHHTS--CEEEEEEEECCHHHHHHHHHHGGGCS--SEEEEEESCHHHHGGGSCTTCEEEEEEC
T ss_pred CCCeEEEeeccchHHHHHHHHc--CCCeEEEeCCCHHHHHHHHHHhhhcc--cccccccccccccccccccccccceeec
Confidence 4679999999999999999986 23689999999999999999987665 3588888887653322 24789999987
Q ss_pred CCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 274 PPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
..-.. ....| +.....+++++.++|||||+
T Consensus 129 ~~~~~---------~~~~~------------~~~~~~~~~~~~r~LkpGG~ 158 (229)
T d1zx0a1 129 TYPLS---------EETWH------------THQFNFIKNHAFRLLKPGGV 158 (229)
T ss_dssp CCCCB---------GGGTT------------THHHHHHHHTHHHHEEEEEE
T ss_pred ccccc---------ccccc------------ccCHHHHHHHHHHHcCCCcE
Confidence 54321 11122 23455789999999999994
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.35 E-value=6e-13 Score=116.51 Aligned_cols=94 Identities=17% Similarity=0.131 Sum_probs=72.6
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNP 274 (324)
++++|||+|||+|.++..+++. ..+|+|+|+|+++++.|+++. .+++.++++|+.+.. .+++||+|++.
T Consensus 20 ~~~~VLDiGcG~G~~~~~l~~~---g~~v~giD~s~~~i~~a~~~~-----~~~~~~~~~~~~~~~--~~~~fD~I~~~- 88 (225)
T d2p7ia1 20 RPGNLLELGSFKGDFTSRLQEH---FNDITCVEASEEAISHAQGRL-----KDGITYIHSRFEDAQ--LPRRYDNIVLT- 88 (225)
T ss_dssp CSSCEEEESCTTSHHHHHHTTT---CSCEEEEESCHHHHHHHHHHS-----CSCEEEEESCGGGCC--CSSCEEEEEEE-
T ss_pred CCCcEEEEeCCCcHHHHHHHHc---CCeEEEEeCcHHHhhhhhccc-----ccccccccccccccc--ccccccccccc-
Confidence 4678999999999999999876 257999999999999998763 245999999987643 24799999993
Q ss_pred CCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHh-cccCCCCC
Q 020573 275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTA-SMLKPDKW 324 (324)
Q Consensus 275 PYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~-~~LkpgG~ 324 (324)
.|..|-+ ....++.++. ++|||||+
T Consensus 89 -------------~vleh~~------------d~~~~l~~i~~~~Lk~gG~ 114 (225)
T d2p7ia1 89 -------------HVLEHID------------DPVALLKRINDDWLAEGGR 114 (225)
T ss_dssp -------------SCGGGCS------------SHHHHHHHHHHTTEEEEEE
T ss_pred -------------ceeEecC------------CHHHHHHHHHHHhcCCCce
Confidence 3334422 2235677776 88999984
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.35 E-value=2.2e-12 Score=112.10 Aligned_cols=106 Identities=18% Similarity=0.204 Sum_probs=81.9
Q ss_pred CeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc-cCCCCeeEEEEc--
Q 020573 197 GFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK-DVEGKLSGVVSN-- 273 (324)
Q Consensus 197 ~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~-~~~~~fDlIVsN-- 273 (324)
..|||+|||+|..++.+|+.. |+..++|+|+++.++..|.+++++.++.| +.++++|+..... ...+.+|.|..+
T Consensus 31 PlvLeIGcG~G~~~~~lA~~~-p~~~~iGiD~~~~~i~~a~~~~~~~~l~N-v~~~~~Da~~l~~~~~~~~~d~v~i~fp 108 (204)
T d2fcaa1 31 PIHIEVGTGKGQFISGMAKQN-PDINYIGIELFKSVIVTAVQKVKDSEAQN-VKLLNIDADTLTDVFEPGEVKRVYLNFS 108 (204)
T ss_dssp CEEEEECCTTSHHHHHHHHHC-TTSEEEEECSCHHHHHHHHHHHHHSCCSS-EEEECCCGGGHHHHCCTTSCCEEEEESC
T ss_pred ceEEEEEecCcHHHHHHHHhC-CCCcEEEeecchHHHHHHHHHHHHHhccC-chhcccchhhhhcccCchhhhccccccc
Confidence 479999999999999999996 99999999999999999999999999975 9999999875432 124688977765
Q ss_pred CCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 274 PPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
.|+... +|..+. + ....+++.+.+.|||||.
T Consensus 109 ~P~~k~-----------~h~k~R-l--------~~~~~l~~~~r~LkpgG~ 139 (204)
T d2fcaa1 109 DPWPKK-----------RHEKRR-L--------TYSHFLKKYEEVMGKGGS 139 (204)
T ss_dssp CCCCSG-----------GGGGGS-T--------TSHHHHHHHHHHHTTSCE
T ss_pred cccchh-----------hhcchh-h--------hHHHHHHHHHHhCCCCcE
Confidence 344321 111111 0 113688999999999994
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.34 E-value=1.8e-12 Score=120.05 Aligned_cols=103 Identities=17% Similarity=0.138 Sum_probs=79.9
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNP 274 (324)
++++|||+|||+|.+++.+|+. ...+|+|+|.|+ ++..|+++++.+++.+++.++++|..+. ....++||+|++++
T Consensus 38 ~~~~VLDlGcGtG~ls~~aa~~--Ga~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~~~l-~~~~~~~D~i~se~ 113 (328)
T d1g6q1_ 38 KDKIVLDVGCGTGILSMFAAKH--GAKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLEDV-HLPFPKVDIIISEW 113 (328)
T ss_dssp TTCEEEEETCTTSHHHHHHHHT--CCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTS-CCSSSCEEEEEECC
T ss_pred CcCEEEEeCCCCCHHHHHHHHh--CCCEEEEEeCCH-HHHHHHHHHHHhCccccceEEEeehhhc-cCcccceeEEEEEe
Confidence 4679999999999999988886 346999999996 6789999999999999999999998774 32347899999975
Q ss_pred CCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 275 PYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
-... ..+|. .+..++....++|||||+
T Consensus 114 ~~~~-----------~~~e~------------~~~~~~~a~~r~LkpgG~ 140 (328)
T d1g6q1_ 114 MGYF-----------LLYES------------MMDTVLYARDHYLVEGGL 140 (328)
T ss_dssp CBTT-----------BSTTC------------CHHHHHHHHHHHEEEEEE
T ss_pred ccee-----------eccch------------hHHHHHHHHHhccCCCeE
Confidence 4321 11211 223566777799999984
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.34 E-value=1.2e-12 Score=120.76 Aligned_cols=103 Identities=17% Similarity=0.190 Sum_probs=80.1
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNP 274 (324)
++++|||+|||+|.+++.+|+. ...+|+|+|.|+. ...|+++++.+++.+++.++++|..+. ....++||+|+++.
T Consensus 33 ~~~~VLDiGcG~G~ls~~aa~~--Ga~~V~avd~s~~-~~~a~~~~~~n~~~~~v~~~~~~~~~~-~~~~~~~D~ivs~~ 108 (316)
T d1oria_ 33 KDKVVLDVGSGTGILCMFAAKA--GARKVIGIECSSI-SDYAVKIVKANKLDHVVTIIKGKVEEV-ELPVEKVDIIISEW 108 (316)
T ss_dssp TTCEEEEETCTTSHHHHHHHHT--TCSEEEEEECSTT-HHHHHHHHHHTTCTTTEEEEESCTTTC-CCSSSCEEEEEECC
T ss_pred CcCEEEEEecCCcHHHHHHHHh--CCCEEEEEcCcHH-HhhhhhHHHHhCCccccceEeccHHHc-ccccceeEEEeeee
Confidence 4679999999999999999985 3468999999975 578889999999999999999999873 33346899999975
Q ss_pred CCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 275 PYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
.... ..+| ..+..++....++|||||.
T Consensus 109 ~~~~-----------l~~e------------~~~~~~l~~~~r~Lkp~G~ 135 (316)
T d1oria_ 109 MGYC-----------LFYE------------SMLNTVLHARDKWLAPDGL 135 (316)
T ss_dssp CBBT-----------BTBT------------CCHHHHHHHHHHHEEEEEE
T ss_pred eeee-----------eccH------------HHHHHHHHHHHhcCCCCeE
Confidence 4221 0111 1234677888899999984
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.34 E-value=2.1e-12 Score=115.76 Aligned_cols=101 Identities=22% Similarity=0.186 Sum_probs=83.7
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNP 274 (324)
...+|||+|||+|.++..+++++ |+.+++++|+ +++++.|+++++..++.+++.+..+|++++.+ ..||+|++.
T Consensus 81 ~~~~vlDvG~G~G~~~~~l~~~~-P~~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~~~~~p---~~~D~v~~~- 154 (256)
T d1qzza2 81 AVRHVLDVGGGNGGMLAAIALRA-PHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKPLP---VTADVVLLS- 154 (256)
T ss_dssp TCCEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCCS---CCEEEEEEE-
T ss_pred cCCEEEEECCCCCHHHHHHHHhh-cCcEEEEecC-hHHHHHHHHHHhhcCCcceeeeeeeecccccc---ccchhhhcc-
Confidence 34689999999999999999997 8999999998 78999999999999999999999999988654 469999983
Q ss_pred CCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 275 PYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
.+.++-+ -+....+++++.+.|||||.
T Consensus 155 -------------~vLh~~~----------d~~~~~lL~~i~~~LkpgG~ 181 (256)
T d1qzza2 155 -------------FVLLNWS----------DEDALTILRGCVRALEPGGR 181 (256)
T ss_dssp -------------SCGGGSC----------HHHHHHHHHHHHHHEEEEEE
T ss_pred -------------ccccccC----------cHHHHHHHHHHHhhcCCcce
Confidence 2222211 12345789999999999983
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.33 E-value=1.9e-12 Score=116.63 Aligned_cols=71 Identities=17% Similarity=0.198 Sum_probs=60.7
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEc
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN 273 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsN 273 (324)
++.+|||+|||+|.++..+++.+ ++.+|+|+|+|+.|++.|+++. .++.+.++|..+ ++..++.||+|+++
T Consensus 84 ~~~~iLDiGcG~G~~~~~l~~~~-~~~~~~giD~s~~~~~~a~~~~------~~~~~~~~d~~~-l~~~~~sfD~v~~~ 154 (268)
T d1p91a_ 84 KATAVLDIGCGEGYYTHAFADAL-PEITTFGLDVSKVAIKAAAKRY------PQVTFCVASSHR-LPFSDTSMDAIIRI 154 (268)
T ss_dssp TCCEEEEETCTTSTTHHHHHHTC-TTSEEEEEESCHHHHHHHHHHC------TTSEEEECCTTS-CSBCTTCEEEEEEE
T ss_pred CCCEEEEeCCCCcHHHHHHHHHC-CCCEEEEecchHhhhhhhhccc------ccccceeeehhh-ccCCCCCEEEEeec
Confidence 46799999999999999999985 7899999999999999998752 359999999877 34446799999984
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.33 E-value=2e-12 Score=112.64 Aligned_cols=101 Identities=16% Similarity=0.008 Sum_probs=79.5
Q ss_pred CCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccccc--CCCCeeE
Q 020573 192 DGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKD--VEGKLSG 269 (324)
Q Consensus 192 ~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~--~~~~fDl 269 (324)
...++.+|||+|||+|..+..+++.. ++++|+|+|+|+.+++.|+++++..+ ++.++.+|...+... ....+|+
T Consensus 53 ~lkpg~~VLDlGcG~G~~~~~la~~v-~~g~V~gvDis~~~i~~a~~~a~~~~---ni~~i~~d~~~~~~~~~~~~~vd~ 128 (209)
T d1nt2a_ 53 KLRGDERVLYLGAASGTTVSHLADIV-DEGIIYAVEYSAKPFEKLLELVRERN---NIIPLLFDASKPWKYSGIVEKVDL 128 (209)
T ss_dssp CCCSSCEEEEETCTTSHHHHHHHHHT-TTSEEEEECCCHHHHHHHHHHHHHCS---SEEEECSCTTCGGGTTTTCCCEEE
T ss_pred CCCCCCEEEEeCCcCCHHHHHHHHhc-cCCeEEEEeCCHHHHHHHHHHhhccC---CceEEEeeccCccccccccceEEE
Confidence 44567899999999999999999987 77899999999999999999998764 599999998764321 2246777
Q ss_pred EEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 270 VVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 270 IVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
|+.+.+.. .....++.++.++|||||.
T Consensus 129 v~~~~~~~----------------------------~~~~~~l~~~~~~LkpgG~ 155 (209)
T d1nt2a_ 129 IYQDIAQK----------------------------NQIEILKANAEFFLKEKGE 155 (209)
T ss_dssp EEECCCST----------------------------THHHHHHHHHHHHEEEEEE
T ss_pred EEecccCh----------------------------hhHHHHHHHHHHHhccCCe
Confidence 77764432 1123578899999999984
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.31 E-value=2.3e-12 Score=115.36 Aligned_cols=101 Identities=11% Similarity=0.001 Sum_probs=77.7
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEc
Q 020573 194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN 273 (324)
Q Consensus 194 ~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsN 273 (324)
....+|||+|||+|.++..++... . .+|++||.|+.+++.|+++.... ++++++++|+.+. ....++||+|+++
T Consensus 92 ~~~~~vLD~GcG~G~~t~~ll~~~-~-~~v~~vD~s~~~l~~a~~~~~~~---~~~~~~~~d~~~~-~~~~~~fD~I~~~ 165 (254)
T d1xtpa_ 92 HGTSRALDCGAGIGRITKNLLTKL-Y-ATTDLLEPVKHMLEEAKRELAGM---PVGKFILASMETA-TLPPNTYDLIVIQ 165 (254)
T ss_dssp CCCSEEEEETCTTTHHHHHTHHHH-C-SEEEEEESCHHHHHHHHHHTTTS---SEEEEEESCGGGC-CCCSSCEEEEEEE
T ss_pred CCCCeEEEecccCChhhHHHHhhc-C-ceEEEEcCCHHHHHhhhcccccc---ccceeEEcccccc-ccCCCccceEEee
Confidence 356799999999999999988764 2 58999999999999999886533 3489999998764 3235789999995
Q ss_pred CCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 274 PPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
- +..|-|. +.+..+++++.++|||||+
T Consensus 166 ~--------------vl~hl~d----------~d~~~~l~~~~~~LkpgG~ 192 (254)
T d1xtpa_ 166 W--------------TAIYLTD----------ADFVKFFKHCQQALTPNGY 192 (254)
T ss_dssp S--------------CGGGSCH----------HHHHHHHHHHHHHEEEEEE
T ss_pred c--------------cccccch----------hhhHHHHHHHHHhcCCCcE
Confidence 2 2344322 2345789999999999984
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.30 E-value=1.2e-11 Score=107.29 Aligned_cols=106 Identities=16% Similarity=0.187 Sum_probs=83.0
Q ss_pred CeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccccc-CCCCeeEEEEcCC
Q 020573 197 GFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKD-VEGKLSGVVSNPP 275 (324)
Q Consensus 197 ~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~-~~~~fDlIVsNPP 275 (324)
..|||+|||+|.+++.+|+.. |+..++|+|+++.++..|.+++.+++++| +.++.+|+.+.... ..+.+|.|++|-|
T Consensus 33 plvLdIGcG~G~~~~~lA~~~-p~~~~iGid~~~~~v~~a~~~~~~~~l~N-i~~~~~da~~l~~~~~~~~~~~i~i~fP 110 (204)
T d1yzha1 33 PIHVEVGSGKGAFVSGMAKQN-PDINYIGIDIQKSVLSYALDKVLEVGVPN-IKLLWVDGSDLTDYFEDGEIDRLYLNFS 110 (204)
T ss_dssp CEEEEESCTTSHHHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHHHCCSS-EEEEECCSSCGGGTSCTTCCSEEEEESC
T ss_pred CeEEEEeccCCHHHHHHHHHC-CCCceEEEeccHHHHHHHHHhhhhhcccc-ceeeecCHHHHhhhccCCceehhccccc
Confidence 479999999999999999996 89999999999999999999999999975 99999998764322 2468998888744
Q ss_pred --CCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 276 --YIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 276 --Yi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
+.... ++.-++ .-..+++...+.|||||.
T Consensus 111 dPw~K~~----------h~krRl----------~~~~~l~~~~~~LkpgG~ 141 (204)
T d1yzha1 111 DPWPKKR----------HEKRRL----------TYKTFLDTFKRILPENGE 141 (204)
T ss_dssp CCCCSGG----------GGGGST----------TSHHHHHHHHHHSCTTCE
T ss_pred ccccchh----------hhhhhh----------hHHHHHHHHHHhCCCCcE
Confidence 33211 111111 113688899999999994
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.30 E-value=2.9e-12 Score=113.08 Aligned_cols=103 Identities=15% Similarity=0.089 Sum_probs=81.6
Q ss_pred CCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccc--ccCCCCee
Q 020573 191 NDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKL--KDVEGKLS 268 (324)
Q Consensus 191 ~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l--~~~~~~fD 268 (324)
....++.+|||+|||+|.++..+|+..+++++|+|+|+++.+++.|+++++..+ ++..+.+|...+. ......+|
T Consensus 69 l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~---~~~~i~~d~~~~~~~~~~~~~vD 145 (227)
T d1g8aa_ 69 FPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERR---NIVPILGDATKPEEYRALVPKVD 145 (227)
T ss_dssp CCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCT---TEEEEECCTTCGGGGTTTCCCEE
T ss_pred cccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcC---CceEEEEECCCcccccccccceE
Confidence 345578899999999999999999999889999999999999999999987553 3777888775432 22346899
Q ss_pred EEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 269 GVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 269 lIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
+|+++.|+.. ....+++++.+.|||||+
T Consensus 146 ~i~~d~~~~~----------------------------~~~~~l~~~~~~LkpgG~ 173 (227)
T d1g8aa_ 146 VIFEDVAQPT----------------------------QAKILIDNAEVYLKRGGY 173 (227)
T ss_dssp EEEECCCSTT----------------------------HHHHHHHHHHHHEEEEEE
T ss_pred EEEEEccccc----------------------------hHHHHHHHHHHhcccCCe
Confidence 9999866531 122578888999999984
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.29 E-value=4.6e-12 Score=110.73 Aligned_cols=93 Identities=23% Similarity=0.292 Sum_probs=78.3
Q ss_pred chHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEE
Q 020573 174 PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQ 253 (324)
Q Consensus 174 p~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~ 253 (324)
|+.-.++..+.... ++++|||+|||+|..++.+|+.++++++|+++|+++++++.|++|+++.|+.++|+++.
T Consensus 42 ~~~G~lL~~lv~~~-------kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~ 114 (214)
T d2cl5a1 42 DAKGQIMDAVIREY-------SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILN 114 (214)
T ss_dssp HHHHHHHHHHHHHH-------CCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEE
T ss_pred HHHHHHHHHHHHhh-------CCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeee
Confidence 45555666666554 35699999999999999999988678999999999999999999999999999999999
Q ss_pred cccccccccC-----CCCeeEEEEc
Q 020573 254 GSWFGKLKDV-----EGKLSGVVSN 273 (324)
Q Consensus 254 gD~~~~l~~~-----~~~fDlIVsN 273 (324)
||..+.++.+ .++||+|+.+
T Consensus 115 Gd~~e~l~~l~~~~~~~~~D~ifiD 139 (214)
T d2cl5a1 115 GASQDLIPQLKKKYDVDTLDMVFLD 139 (214)
T ss_dssp SCHHHHGGGHHHHSCCCCEEEEEEC
T ss_pred ccccccccchhhcccccccceeeec
Confidence 9998765432 3579999984
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=99.29 E-value=3.8e-12 Score=121.99 Aligned_cols=139 Identities=19% Similarity=0.213 Sum_probs=96.3
Q ss_pred CCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCC------------CcEEEEEeCCHHHHH
Q 020573 167 EGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGS------------KGSIIAVDLNPLAAA 234 (324)
Q Consensus 167 ~~vliPrp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p------------~~~V~gvDis~~al~ 234 (324)
..+|.|+..++++++.+. ...+.+|+|++||||.+.+.+.+.... ...++|+|+++.+..
T Consensus 142 G~f~TP~~Iv~~mv~ll~--------~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~ 213 (425)
T d2okca1 142 GQYFTPRPLIQAMVDCIN--------PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVT 213 (425)
T ss_dssp GGGCCCHHHHHHHHHHHC--------CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHH
T ss_pred hhhccchhhhHhhheecc--------CcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHH
Confidence 346788887777766432 224568999999999999999886521 124999999999999
Q ss_pred HHHHHHHHcCCCC-cEEEEEcccccccccCCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHH
Q 020573 235 VAAFNAQRYGLQD-IIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCN 313 (324)
Q Consensus 235 ~Ar~N~~~~gl~~-rv~~~~gD~~~~l~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~ 313 (324)
+|+.|+..+|... ...+..+|.++... ..+||+||+||||........ . .... ....+.... .-.+++
T Consensus 214 la~~n~~l~g~~~~~~~i~~~d~l~~~~--~~~fD~Ii~NPPfg~~~~~~~-~--~~~~----~~~~~~~~~--~~~Fi~ 282 (425)
T d2okca1 214 LASMNLYLHGIGTDRSPIVCEDSLEKEP--STLVDVILANPPFGTRPAGSV-D--INRP----DFYVETKNN--QLNFLQ 282 (425)
T ss_dssp HHHHHHHHTTCCSSCCSEEECCTTTSCC--SSCEEEEEECCCSSCCCTTCC-C--CCCT----TSSSCCSCH--HHHHHH
T ss_pred HHHhhhhhcCCccccceeecCchhhhhc--ccccceEEecCCCCCCccccc-h--hhhh----hcccccccH--HHHHHH
Confidence 9999999988753 46788888886533 368999999999964322111 0 0000 011122222 335889
Q ss_pred HHhcccCCCCC
Q 020573 314 GTASMLKPDKW 324 (324)
Q Consensus 314 ~a~~~LkpgG~ 324 (324)
.+.++|++||.
T Consensus 283 ~~~~~Lk~~G~ 293 (425)
T d2okca1 283 HMMLMLKTGGR 293 (425)
T ss_dssp HHHHHEEEEEE
T ss_pred HHHHhcCCCCe
Confidence 99999999984
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.27 E-value=4.5e-12 Score=111.24 Aligned_cols=115 Identities=15% Similarity=0.225 Sum_probs=91.2
Q ss_pred chHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEE
Q 020573 174 PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQ 253 (324)
Q Consensus 174 p~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~ 253 (324)
|+.-.++..+.... +.++|||+|||+|+-++.+|+.++.+++|+++|.+++..+.|++|+++.|+.++++++.
T Consensus 45 ~~~g~lL~~L~~~~-------~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~ 117 (219)
T d2avda1 45 CEQAQLLANLARLI-------QAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRL 117 (219)
T ss_dssp HHHHHHHHHHHHHT-------TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEE
T ss_pred HHHHHHHHHHHHcc-------CCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEE
Confidence 45555566555544 36799999999999999999988668999999999999999999999999999999999
Q ss_pred ccccccccc-----CCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 254 GSWFGKLKD-----VEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 254 gD~~~~l~~-----~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
||..+.++. ..++||+|+.+ ++. +.|...++.+.++|+|||+
T Consensus 118 Gda~e~l~~~~~~~~~~~fD~ifiD------------------~dk-----------~~y~~~~~~~~~lL~~GGv 164 (219)
T d2avda1 118 KPALETLDELLAAGEAGTFDVAVVD------------------ADK-----------ENCSAYYERCLQLLRPGGI 164 (219)
T ss_dssp SCHHHHHHHHHHTTCTTCEEEEEEC------------------SCS-----------TTHHHHHHHHHHHEEEEEE
T ss_pred eehhhcchhhhhhcccCCccEEEEe------------------CCH-----------HHHHHHHHHHHHHhcCCcE
Confidence 998775532 24689999994 100 0123456777889999985
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.27 E-value=4.6e-12 Score=111.93 Aligned_cols=114 Identities=14% Similarity=0.038 Sum_probs=81.0
Q ss_pred HHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccc
Q 020573 178 LMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWF 257 (324)
Q Consensus 178 ~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~ 257 (324)
-+...+..-+ ......++.+|||+|||+|..+..+|+.. ++++|+|+|+|+.+++.|+++++..+ ++..+.+|..
T Consensus 58 klaA~i~~gl-~~l~ikpG~~VLDlGcGsG~~~~~la~~~-~~g~V~aVDiS~~~i~~a~~~a~~~~---ni~~i~~d~~ 132 (230)
T d1g8sa_ 58 KLAAAIIKGL-KVMPIKRDSKILYLGASAGTTPSHVADIA-DKGIVYAIEYAPRIMRELLDACAERE---NIIPILGDAN 132 (230)
T ss_dssp HHHHHHHTTC-CCCCCCTTCEEEEESCCSSHHHHHHHHHT-TTSEEEEEESCHHHHHHHHHHTTTCT---TEEEEECCTT
T ss_pred HHHHHHHhhH-HhCCCCCCCEEEEeCEEcCHHHHHHHHhC-CCCEEEEEeCcHHHHHHHHHHHhhhc---ccceEEEeec
Confidence 3444444433 23345567899999999999999999974 88999999999999999999876543 4888888887
Q ss_pred cccccCCCCeeE--EEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 258 GKLKDVEGKLSG--VVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 258 ~~l~~~~~~fDl--IVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
.+.......+|+ ++.+-.+ .+..+.++.++.+.|||||.
T Consensus 133 ~~~~~~~~~~~v~~i~~~~~~----------------------------~~~~~~~l~~~~r~LKpgG~ 173 (230)
T d1g8sa_ 133 KPQEYANIVEKVDVIYEDVAQ----------------------------PNQAEILIKNAKWFLKKGGY 173 (230)
T ss_dssp CGGGGTTTCCCEEEEEECCCS----------------------------TTHHHHHHHHHHHHEEEEEE
T ss_pred cCcccccccceeEEeeccccc----------------------------hHHHHHHHHHHHHhcccCce
Confidence 765433344454 4442111 11234678899999999984
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.26 E-value=8.7e-12 Score=107.22 Aligned_cols=123 Identities=19% Similarity=0.232 Sum_probs=98.5
Q ss_pred HHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccc
Q 020573 178 LMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWF 257 (324)
Q Consensus 178 ~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~ 257 (324)
.|++.+++++ ...+++.++|++||+|..+..+++.+ ++++|+|+|.+++|++.|+++++.++ +++.++++++.
T Consensus 10 Vll~evi~~l----~~~~~~~~lD~t~G~Gghs~~il~~~-~~~~vi~~D~d~~~l~~a~~~l~~~~--~r~~~~~~~f~ 82 (192)
T d1m6ya2 10 VMVREVIEFL----KPEDEKIILDCTVGEGGHSRAILEHC-PGCRIIGIDVDSEVLRIAEEKLKEFS--DRVSLFKVSYR 82 (192)
T ss_dssp TTHHHHHHHH----CCCTTCEEEETTCTTSHHHHHHHHHC-TTCEEEEEESCHHHHHHHHHHTGGGT--TTEEEEECCGG
T ss_pred hHHHHHHHhh----CCCCCCEEEEecCCCcHHHHHHHhcC-CCCeEEEeechHHHHHHHHHhhcccc--ccccchhHHHh
Confidence 3566667766 34467899999999999999999997 78999999999999999999988765 57999999986
Q ss_pred ccc---cc-CCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 258 GKL---KD-VEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 258 ~~l---~~-~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
+.. .. ..++||.|+.+.++.. . -+++...|+..+...+..+.+.|++||.
T Consensus 83 ~~~~~~~~~~~~~vdgIl~DlGvSs------~-----------Qld~~~r~~~~~~~~L~~a~~~Lk~gG~ 136 (192)
T d1m6ya2 83 EADFLLKTLGIEKVDGILMDLGVST------Y-----------QLKGENRELENLKEFLKKAEDLLNPGGR 136 (192)
T ss_dssp GHHHHHHHTTCSCEEEEEEECSCCH------H-----------HHHTSHTHHHHHHHHHHHGGGGEEEEEE
T ss_pred hHHHHHHHcCCCCcceeeeccchhH------h-----------hhhhhhccchhHHHHHHHHHHhcCCCCe
Confidence 521 11 1368999999876631 1 1345567899999999999999999983
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.25 E-value=1.8e-11 Score=107.84 Aligned_cols=115 Identities=16% Similarity=0.272 Sum_probs=93.6
Q ss_pred chHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEE
Q 020573 174 PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQ 253 (324)
Q Consensus 174 p~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~ 253 (324)
|+.-.++..+.... ..++||++||++|+-++.+|+.++++++|+.+|.+++..+.|++|+++.|+.++++++.
T Consensus 45 ~~~g~~L~~L~~~~-------~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~ 117 (227)
T d1susa1 45 ADEGQFLSMLLKLI-------NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFRE 117 (227)
T ss_dssp HHHHHHHHHHHHHH-------TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEE
T ss_pred HHHHHHHHHHHHhc-------CCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeee
Confidence 45556666666655 36799999999999999999998778999999999999999999999999999999999
Q ss_pred cccccccccC------CCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 254 GSWFGKLKDV------EGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 254 gD~~~~l~~~------~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
|+..+.++.+ .++||+|+.| .+ + ..|...++.+.++|+|||+
T Consensus 118 g~a~~~L~~l~~~~~~~~~fD~iFiD------a~----------k-------------~~y~~~~e~~~~ll~~gGi 165 (227)
T d1susa1 118 GPALPVLDEMIKDEKNHGSYDFIFVD------AD----------K-------------DNYLNYHKRLIDLVKVGGV 165 (227)
T ss_dssp SCHHHHHHHHHHCGGGTTCBSEEEEC------SC----------S-------------TTHHHHHHHHHHHBCTTCC
T ss_pred hHHHHHHHHHHhccccCCceeEEEec------cc----------h-------------hhhHHHHHHHHhhcCCCcE
Confidence 9998765432 4689999995 00 0 1134567778899999996
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.24 E-value=3.9e-11 Score=104.82 Aligned_cols=105 Identities=18% Similarity=0.252 Sum_probs=85.8
Q ss_pred ccCeeeeeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Q 020573 158 WRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAA 237 (324)
Q Consensus 158 f~~l~~~v~~~vliPrp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar 237 (324)
|.+..+.+..+..+..|.+ +..+++.+ +..++.+|||+|||||+.+..+|+.+ +.+|+++|++++.++.|+
T Consensus 48 Y~D~~l~i~~g~~is~P~~---~a~ml~~L----~l~~g~~VLeIGsGsGY~taila~l~--g~~V~~ie~~~~l~~~a~ 118 (215)
T d1jg1a_ 48 HIDEPLPIPAGQTVSAPHM---VAIMLEIA----NLKPGMNILEVGTGSGWNAALISEIV--KTDVYTIERIPELVEFAK 118 (215)
T ss_dssp TSSSCEECSTTCEECCHHH---HHHHHHHH----TCCTTCCEEEECCTTSHHHHHHHHHH--CSCEEEEESCHHHHHHHH
T ss_pred cccCCcccchhhhhhhhhh---HHHHHHhh----ccCccceEEEecCCCChhHHHHHHhh--CceeEEEeccHHHHHHHH
Confidence 4566777788888887753 34444444 34467799999999999999999976 367999999999999999
Q ss_pred HHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEc
Q 020573 238 FNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN 273 (324)
Q Consensus 238 ~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsN 273 (324)
+|+++.++.+ +.++++|..+..+. .++||.|+.+
T Consensus 119 ~~l~~~g~~n-v~~~~gd~~~g~~~-~~pfD~Iiv~ 152 (215)
T d1jg1a_ 119 RNLERAGVKN-VHVILGDGSKGFPP-KAPYDVIIVT 152 (215)
T ss_dssp HHHHHTTCCS-EEEEESCGGGCCGG-GCCEEEEEEC
T ss_pred HHHHHcCCce-eEEEECccccCCcc-cCcceeEEee
Confidence 9999999865 99999999886654 4789999995
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=99.23 E-value=1.4e-11 Score=108.37 Aligned_cols=98 Identities=20% Similarity=0.225 Sum_probs=75.4
Q ss_pred eeeeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 020573 162 VLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ 241 (324)
Q Consensus 162 ~~~v~~~vliPrp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~ 241 (324)
.+.+.++..+..|.... .+++.+ ...++.+|||+|||+|+++..+|+.. .+|+++|+++++++.|++|..
T Consensus 44 ~l~i~~g~~~~~p~~~a---~ml~~L----~l~~g~~VLdIG~GsGy~ta~La~l~---~~V~aiE~~~~~~~~A~~~~~ 113 (224)
T d1vbfa_ 44 ALPILPGINTTALNLGI---FMLDEL----DLHKGQKVLEIGTGIGYYTALIAEIV---DKVVSVEINEKMYNYASKLLS 113 (224)
T ss_dssp CEEEETTEEECCHHHHH---HHHHHT----TCCTTCEEEEECCTTSHHHHHHHHHS---SEEEEEESCHHHHHHHHHHHT
T ss_pred CcccCCCCceehhhhHH---HHHHHh----hhcccceEEEecCCCCHHHHHHHHHh---cccccccccHHHHHHHHHHHh
Confidence 35566676676665433 334444 34467899999999999999999874 699999999999999999876
Q ss_pred HcCCCCcEEEEEcccccccccCCCCeeEEEEc
Q 020573 242 RYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN 273 (324)
Q Consensus 242 ~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsN 273 (324)
.+ +++.++.+|.....+. .++||.|+++
T Consensus 114 ~~---~nv~~~~~d~~~g~~~-~~pfD~Iiv~ 141 (224)
T d1vbfa_ 114 YY---NNIKLILGDGTLGYEE-EKPYDRVVVW 141 (224)
T ss_dssp TC---SSEEEEESCGGGCCGG-GCCEEEEEES
T ss_pred cc---cccccccCchhhcchh-hhhHHHHHhh
Confidence 43 4699999998876554 4689999985
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.22 E-value=4.8e-12 Score=108.70 Aligned_cols=87 Identities=15% Similarity=0.096 Sum_probs=67.7
Q ss_pred CCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcCC
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPP 275 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNPP 275 (324)
..+|||+|||+|.++..+ .+++|+|+|+.+++.|+++ +++++++|..+. +...++||+|+++
T Consensus 37 ~~~vLDiGcG~G~~~~~~-------~~~~giD~s~~~~~~a~~~--------~~~~~~~d~~~l-~~~~~~fD~I~~~-- 98 (208)
T d1vlma_ 37 EGRGVEIGVGTGRFAVPL-------KIKIGVEPSERMAEIARKR--------GVFVLKGTAENL-PLKDESFDFALMV-- 98 (208)
T ss_dssp SSCEEEETCTTSTTHHHH-------TCCEEEESCHHHHHHHHHT--------TCEEEECBTTBC-CSCTTCEEEEEEE--
T ss_pred CCeEEEECCCCccccccc-------ceEEEEeCChhhccccccc--------cccccccccccc-ccccccccccccc--
Confidence 458999999999887654 2468999999999999874 389999998763 3335799999994
Q ss_pred CCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 276 YIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 276 Yi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
.+..|-|. ...+++++.++|+|||+
T Consensus 99 ------------~~l~h~~d------------~~~~l~~~~~~L~pgG~ 123 (208)
T d1vlma_ 99 ------------TTICFVDD------------PERALKEAYRILKKGGY 123 (208)
T ss_dssp ------------SCGGGSSC------------HHHHHHHHHHHEEEEEE
T ss_pred ------------cccccccc------------cccchhhhhhcCCCCce
Confidence 33445332 34688999999999994
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=99.17 E-value=1.3e-11 Score=121.42 Aligned_cols=138 Identities=20% Similarity=0.231 Sum_probs=92.0
Q ss_pred CCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCC-----------------CcEEEEEeCC
Q 020573 167 EGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGS-----------------KGSIIAVDLN 229 (324)
Q Consensus 167 ~~vliPrp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p-----------------~~~V~gvDis 229 (324)
..+|.|+...+++++.+. ...+.+|+|.+||+|.+.+.+.+.+.. ...++|+|++
T Consensus 144 GqfyTP~~Iv~~mv~ll~--------~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~ 215 (524)
T d2ar0a1 144 GQYFTPRPLIKTIIHLLK--------PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELV 215 (524)
T ss_dssp -CCCCCHHHHHHHHHHHC--------CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESC
T ss_pred chhccccchhHhhhhccc--------CccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccC
Confidence 457889987777776432 224568999999999999998775421 1258999999
Q ss_pred HHHHHHHHHHHHHcCCCCc----EEEEEcccccccccCCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcH
Q 020573 230 PLAAAVAAFNAQRYGLQDI----IEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGL 305 (324)
Q Consensus 230 ~~al~~Ar~N~~~~gl~~r----v~~~~gD~~~~l~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl 305 (324)
+.+..+|+.|+..++.... -.+..++.+........+||+||+||||.......... .+.+ +....
T Consensus 216 ~~~~~la~~nl~l~~~~~~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~----~~~~------~~~~~ 285 (524)
T d2ar0a1 216 PGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITR----TFVH------PTSNK 285 (524)
T ss_dssp HHHHHHHHHHHHTTTCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCS----CCSS------CCSCH
T ss_pred HHHHHHHHHHHHhhcccccccccchhhhhhhhhhcccccccceeEEecCCccccccccchh----hhcc------ccccc
Confidence 9999999999988876432 23445554432112235899999999997544322111 1111 11112
Q ss_pred HHHHHHHHHHhcccCCCCC
Q 020573 306 DYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 306 ~~~~~il~~a~~~LkpgG~ 324 (324)
+ -.|++.+.++||+||.
T Consensus 286 ~--~~Fi~~~l~~Lk~gGr 302 (524)
T d2ar0a1 286 Q--LCFMQHIIETLHPGGR 302 (524)
T ss_dssp H--HHHHHHHHHHEEEEEE
T ss_pred c--HHHHHHHHHhccccCc
Confidence 2 2588999999999984
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.10 E-value=1.3e-10 Score=107.52 Aligned_cols=115 Identities=17% Similarity=0.219 Sum_probs=81.5
Q ss_pred HHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHc-------CC-CCcE
Q 020573 178 LMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRY-------GL-QDII 249 (324)
Q Consensus 178 ~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~-------gl-~~rv 249 (324)
..+..+++.+ ...++.+|||+|||+|.+++.+|+.. +..+++|+|+++.+++.|+++++.. |+ ..++
T Consensus 138 ~~~~~~~~~~----~l~~~~~vlD~GcG~G~~~~~~a~~~-~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i 212 (328)
T d1nw3a_ 138 DLVAQMIDEI----KMTDDDLFVDLGSGVGQVVLQVAAAT-NCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEY 212 (328)
T ss_dssp HHHHHHHHHS----CCCTTCEEEEETCTTSHHHHHHHHHC-CCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCE
T ss_pred HHHHHHHHHc----CCCCCCEEEEcCCCCCHHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCce
Confidence 3455555554 34467799999999999999999986 6678999999999999999987653 22 2469
Q ss_pred EEEEcccccccc-cCCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 250 EIRQGSWFGKLK-DVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 250 ~~~~gD~~~~l~-~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
++++||+.+..- ......|+|++|-= .|-| .+...+.+..+.|||||.
T Consensus 213 ~~~~gd~~~~~~~~~~~~advi~~~~~---------------~f~~------------~~~~~l~e~~r~LKpGg~ 261 (328)
T d1nw3a_ 213 TLERGDFLSEEWRERIANTSVIFVNNF---------------AFGP------------EVDHQLKERFANMKEGGR 261 (328)
T ss_dssp EEEECCTTSHHHHHHHHHCSEEEECCT---------------TTCH------------HHHHHHHHHHTTCCTTCE
T ss_pred EEEECcccccccccccCcceEEEEcce---------------ecch------------HHHHHHHHHHHhCCCCcE
Confidence 999999976311 10013578888611 1211 223567788899999994
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.09 E-value=1.4e-10 Score=104.04 Aligned_cols=102 Identities=11% Similarity=-0.070 Sum_probs=70.7
Q ss_pred CeEEEEcCCccHHHHHHHHHhC---C--CcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEE--EEcccccc-----cccCC
Q 020573 197 GFWVDLGTGSGAIAIGIARVLG---S--KGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEI--RQGSWFGK-----LKDVE 264 (324)
Q Consensus 197 ~~VLDLGcGsG~iai~la~~~~---p--~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~--~~gD~~~~-----l~~~~ 264 (324)
.+|||+|||+|.++..+++.+. + ...++|+|.|+.+++.|+++++.......+.+ ...++.+. .....
T Consensus 42 ~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (280)
T d1jqea_ 42 IKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKEL 121 (280)
T ss_dssp EEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTSSSC
T ss_pred CeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhcccCCC
Confidence 4799999999999988876531 2 34789999999999999999876543333444 44443211 11124
Q ss_pred CCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 265 GKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 265 ~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
++||+|++. .+..|-+. ...+++++.++|||||+
T Consensus 122 ~~fD~I~~~--------------~~l~~~~d------------~~~~l~~l~~~LkpgG~ 155 (280)
T d1jqea_ 122 QKWDFIHMI--------------QMLYYVKD------------IPATLKFFHSLLGTNAK 155 (280)
T ss_dssp CCEEEEEEE--------------SCGGGCSC------------HHHHHHHHHHTEEEEEE
T ss_pred CceeEEEEc--------------cceecCCC------------HHHHHHHHHhhCCCCCE
Confidence 789999993 23334322 34688999999999994
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.09 E-value=1.7e-11 Score=108.17 Aligned_cols=107 Identities=17% Similarity=0.027 Sum_probs=71.1
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCc-------------------------
Q 020573 194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDI------------------------- 248 (324)
Q Consensus 194 ~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~r------------------------- 248 (324)
.++.+|||+|||+|..++.++.. ...+|+|+|+|+.+++.|+++++..+....
T Consensus 50 ~~g~~vLDlGcG~G~~~~~~~~~--~~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (257)
T d2a14a1 50 LQGDTLIDIGSGPTIYQVLAACD--SFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKL 127 (257)
T ss_dssp CCEEEEEESSCTTCCGGGTTGGG--TEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred CCCCEEEEECCCCCHhHHHHhcc--ccCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHH
Confidence 35678999999999988877764 235799999999999999999876543210
Q ss_pred ---E-EEEEccccc-c-c-ccCCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCC
Q 020573 249 ---I-EIRQGSWFG-K-L-KDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKP 321 (324)
Q Consensus 249 ---v-~~~~gD~~~-~-l-~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~Lkp 321 (324)
+ .....+... . . ....++||+|++. .+..|-+. ..+.++.+++++.++|||
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~--------------~~l~~~~~--------~~~~~~~~l~~i~~~Lkp 185 (257)
T d2a14a1 128 RAAVKRVLKCDVHLGNPLAPAVLPLADCVLTL--------------LAMECACC--------SLDAYRAALCNLASLLKP 185 (257)
T ss_dssp HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEE--------------SCHHHHCS--------SHHHHHHHHHHHHTTEEE
T ss_pred hhhhhcccccccccccccccccCCcccEEeeh--------------hhHHHhcc--------cHHHHHHHHHHHHhccCC
Confidence 0 111111111 0 0 1124689999983 22222211 135677899999999999
Q ss_pred CCC
Q 020573 322 DKW 324 (324)
Q Consensus 322 gG~ 324 (324)
||+
T Consensus 186 GG~ 188 (257)
T d2a14a1 186 GGH 188 (257)
T ss_dssp EEE
T ss_pred CcE
Confidence 994
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.05 E-value=1.9e-10 Score=100.88 Aligned_cols=111 Identities=15% Similarity=0.190 Sum_probs=83.0
Q ss_pred ccccCeeeeeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCC-----CcEEEEEeCCH
Q 020573 156 EHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGS-----KGSIIAVDLNP 230 (324)
Q Consensus 156 ~~f~~l~~~v~~~vliPrp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p-----~~~V~gvDis~ 230 (324)
..|.+..+.+..+..+..|... -.+++.+ . ....++.+|||+|||||+.+..+++..++ ..+|+++|+++
T Consensus 46 ~aY~D~~lpi~~~~~is~P~~~---a~~l~~L-~-~~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~ 120 (223)
T d1r18a_ 46 NPYMDAPQPIGGGVTISAPHMH---AFALEYL-R-DHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQA 120 (223)
T ss_dssp CTTBSSCEEEETTEEECCHHHH---HHHHHHT-T-TTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCH
T ss_pred cccCCCCccccCCceeehhhhH---HHHHHHH-h-hccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCH
Confidence 3566777888888888766433 3333333 1 12235779999999999999999987643 34899999999
Q ss_pred HHHHHHHHHHHHc-----CCCCcEEEEEcccccccccCCCCeeEEEEc
Q 020573 231 LAAAVAAFNAQRY-----GLQDIIEIRQGSWFGKLKDVEGKLSGVVSN 273 (324)
Q Consensus 231 ~al~~Ar~N~~~~-----gl~~rv~~~~gD~~~~l~~~~~~fDlIVsN 273 (324)
++++.|++|+... +. .++.++++|..+.... .++||.|+++
T Consensus 121 ~l~~~a~~~l~~~~~~~~~~-~nv~~~~~d~~~~~~~-~~~fD~Iiv~ 166 (223)
T d1r18a_ 121 ELVRRSKANLNTDDRSMLDS-GQLLIVEGDGRKGYPP-NAPYNAIHVG 166 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-TSEEEEESCGGGCCGG-GCSEEEEEEC
T ss_pred HHHHHHHHhhhhcchhhcCc-cEEEEEeccccccccc-ccceeeEEEE
Confidence 9999999998654 33 3599999999876554 4689999995
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.05 E-value=4.8e-10 Score=103.09 Aligned_cols=140 Identities=16% Similarity=0.260 Sum_probs=100.8
Q ss_pred CcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCC
Q 020573 168 GVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQD 247 (324)
Q Consensus 168 ~vliPrp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~ 247 (324)
|.++....+..++-.+++ ..++.+|||+|+|.|.=+..++.....++.|+++|+++.-+...++|+++.|+.+
T Consensus 96 G~~~vQD~aS~l~~~~l~-------~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~ 168 (313)
T d1ixka_ 96 GLIYIQEASSMYPPVALD-------PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLN 168 (313)
T ss_dssp TSEEECCHHHHHHHHHHC-------CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCS
T ss_pred ceEEEecccccchhhccc-------CCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhc
Confidence 344444445555554442 2357799999999999999999987677899999999999999999999999975
Q ss_pred cEEEEEcccccccccCCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcH----HHHHHHHHHHhcccCCCC
Q 020573 248 IIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGL----DYLLHLCNGTASMLKPDK 323 (324)
Q Consensus 248 rv~~~~gD~~~~l~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl----~~~~~il~~a~~~LkpgG 323 (324)
+.+...|.... ....++||.|+.++|....+.+. ..|.....-..+.+ ..-++|+..|.++|||||
T Consensus 169 -i~~~~~d~~~~-~~~~~~fD~ILvDaPCSg~G~~~--------r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG 238 (313)
T d1ixka_ 169 -VILFHSSSLHI-GELNVEFDKILLDAPCTGSGTIH--------KNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGG 238 (313)
T ss_dssp -EEEESSCGGGG-GGGCCCEEEEEEECCTTSTTTCC----------------CCHHHHHHHHHHHHHHHHHHHHHEEEEE
T ss_pred -ccccccccccc-ccccccccEEEEccccccCCcee--------eccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCc
Confidence 88888876653 33357899999999998776553 22333222222222 333689999999999999
Q ss_pred C
Q 020573 324 W 324 (324)
Q Consensus 324 ~ 324 (324)
+
T Consensus 239 ~ 239 (313)
T d1ixka_ 239 I 239 (313)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.03 E-value=1.4e-09 Score=98.97 Aligned_cols=120 Identities=16% Similarity=0.127 Sum_probs=85.1
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccccc--CCCCeeEEEE
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKD--VEGKLSGVVS 272 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~--~~~~fDlIVs 272 (324)
++.+|||+|+|.|.-+..+|...+.+++|+++|+++.-++..++|++++|+.+ +.+...|....... ..++||.|+.
T Consensus 94 ~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~~-~~~~~~d~~~~~~~~~~~~~fD~VL~ 172 (293)
T d2b9ea1 94 PGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSC-CELAEEDFLAVSPSDPRYHEVHYILL 172 (293)
T ss_dssp TTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCS-EEEEECCGGGSCTTCGGGTTEEEEEE
T ss_pred ccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCccc-eeeeehhhhhhcccccccceeeEEee
Confidence 57799999999999999999887778899999999999999999999999975 99999998653221 1357999999
Q ss_pred cCCCCCCCCcccchhhhhcccccccccC--CCCc---H-HHHHHHHHHHhcccCCCCC
Q 020573 273 NPPYIPSDDISGLQVEVGKHEPRLALDG--GVDG---L-DYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 273 NPPYi~~~~~~~l~~ev~~~eP~~aL~g--g~dG---l-~~~~~il~~a~~~LkpgG~ 324 (324)
+||....+.+. ..|...... .... + ..-+.++..|.. |++||.
T Consensus 173 DaPCSg~G~~~--------r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~~-l~~gG~ 221 (293)
T d2b9ea1 173 DPSCSGSGMPS--------RQLEEPGAGTPSPVRLHALAGFQQRALCHALT-FPSLQR 221 (293)
T ss_dssp CCCCCC--------------------------CCHHHHHHHHHHHHHHHTT-CTTCCE
T ss_pred cCcccchhhhc--------ccchhhccCCcchhhHHHHhhhhHHhHHHhhh-cccccE
Confidence 99998776543 223322111 1111 2 223567888884 799984
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.03 E-value=3.9e-10 Score=102.33 Aligned_cols=121 Identities=14% Similarity=0.164 Sum_probs=91.0
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEc
Q 020573 194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN 273 (324)
Q Consensus 194 ~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsN 273 (324)
.++.+|||+|+|.|.-+..++... .+++|+++|+++.-+...++|+++.|+.+ +.....|.........++||.|+.+
T Consensus 101 ~~g~~vLD~CAaPGgKt~~la~l~-~~~~i~a~d~~~~R~~~l~~~~~r~g~~~-~~~~~~~~~~~~~~~~~~fd~IL~D 178 (284)
T d1sqga2 101 QNGEHILDLCAAPGGKTTHILEVA-PEAQVVAVDIDEQRLSRVYDNLKRLGMKA-TVKQGDGRYPSQWCGEQQFDRILLD 178 (284)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHHC-TTCEEEEEESSTTTHHHHHHHHHHTTCCC-EEEECCTTCTHHHHTTCCEEEEEEE
T ss_pred cccceeEeccCccccchhhhhhhh-hhhhhhhhhcchhhhhhHhhhhhcccccc-eeeeccccccchhcccccccEEEEe
Confidence 357799999999999999999864 67899999999999999999999999875 5555555443222224689999999
Q ss_pred CCCCCCCCcccchhhhhcccccccccCCCCcH----HHHHHHHHHHhcccCCCCC
Q 020573 274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGL----DYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 274 PPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl----~~~~~il~~a~~~LkpgG~ 324 (324)
+|....+.+ +..|.+...-....+ ..-+.|+..|.++|||||+
T Consensus 179 aPCSg~G~~--------rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~ 225 (284)
T d1sqga2 179 APCSATGVI--------RRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGT 225 (284)
T ss_dssp CCCCCGGGT--------TTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEE
T ss_pred ccccccCcc--------ccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCce
Confidence 999876654 334443333222222 2236899999999999994
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.01 E-value=4.9e-10 Score=106.33 Aligned_cols=105 Identities=11% Similarity=0.121 Sum_probs=73.7
Q ss_pred CCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcC-------C-CCcEEE-EEcccccccc-
Q 020573 192 DGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYG-------L-QDIIEI-RQGSWFGKLK- 261 (324)
Q Consensus 192 ~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~g-------l-~~rv~~-~~gD~~~~l~- 261 (324)
...++.++||||||+|.+++.+|..+ +.++|+|||+++.+++.|+++++..+ . ...+.+ ..+++++...
T Consensus 213 ~Lkpgd~fLDLGCG~G~~vl~aA~~~-g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~~f~~~~~~ 291 (406)
T d1u2za_ 213 QLKKGDTFMDLGSGVGNCVVQAALEC-GCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRV 291 (406)
T ss_dssp TCCTTCEEEEESCTTSHHHHHHHHHH-CCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHHH
T ss_pred CCCCCCEEEeCCCCCcHHHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeeechhhcccc
Confidence 45567899999999999999999987 55699999999999999999987642 1 112343 3555543211
Q ss_pred -cCCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 262 -DVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 262 -~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
......|+|+.|- | .|.| .+.+.+.+..+.|||||.
T Consensus 292 d~~~~~adVV~inn-~--------------~f~~------------~l~~~L~ei~r~LKPGGr 328 (406)
T d1u2za_ 292 AELIPQCDVILVNN-F--------------LFDE------------DLNKKVEKILQTAKVGCK 328 (406)
T ss_dssp HHHGGGCSEEEECC-T--------------TCCH------------HHHHHHHHHHTTCCTTCE
T ss_pred ccccccceEEEEec-c--------------cCch------------HHHHHHHHHHHhcCCCcE
Confidence 0113578888861 1 1222 234677888999999994
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=98.90 E-value=2.3e-09 Score=94.51 Aligned_cols=90 Identities=11% Similarity=0.140 Sum_probs=68.7
Q ss_pred HHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccc
Q 020573 179 MVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFG 258 (324)
Q Consensus 179 lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~ 258 (324)
+++.+.+.+ +..++++|||+|||+|.++..+++.. .+|+|+|+++.+++.++++...+ ++++++++|+.+
T Consensus 9 i~~~iv~~~----~~~~~d~VlEIGpG~G~LT~~Ll~~~---~~v~avE~D~~l~~~l~~~~~~~---~n~~i~~~D~l~ 78 (235)
T d1qama_ 9 NIDKIMTNI----RLNEHDNIFEIGSGKGHFTLELVQRC---NFVTAIEIDHKLCKTTENKLVDH---DNFQVLNKDILQ 78 (235)
T ss_dssp HHHHHHTTC----CCCTTCEEEEECCTTSHHHHHHHHHS---SEEEEECSCHHHHHHHHHHTTTC---CSEEEECCCGGG
T ss_pred HHHHHHHhc----CCCCCCeEEEECCCchHHHHHHHhCc---CceEEEeeccchHHHHHHHhhcc---cchhhhhhhhhh
Confidence 344444443 34567899999999999999999873 68999999999999998865432 469999999987
Q ss_pred ccccCCCCeeEEEEcCCCCCC
Q 020573 259 KLKDVEGKLSGVVSNPPYIPS 279 (324)
Q Consensus 259 ~l~~~~~~fDlIVsNPPYi~~ 279 (324)
.-.. ......||+|.||.-+
T Consensus 79 ~~~~-~~~~~~vv~NLPYnIs 98 (235)
T d1qama_ 79 FKFP-KNQSYKIFGNIPYNIS 98 (235)
T ss_dssp CCCC-SSCCCEEEEECCGGGH
T ss_pred cccc-ccccceeeeeehhhhh
Confidence 4221 2344579999999654
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.90 E-value=5.6e-10 Score=99.76 Aligned_cols=108 Identities=11% Similarity=0.007 Sum_probs=71.2
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCC-C------------------------
Q 020573 193 GLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQ-D------------------------ 247 (324)
Q Consensus 193 ~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~-~------------------------ 247 (324)
...+.++||+|||+|.+.+..+... ..+|+|+|+|+.|++.|+++++..... +
T Consensus 52 ~~~g~~vLDiGcG~g~~~~~~~~~~--~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 129 (263)
T d2g72a1 52 EVSGRTLIDIGSGPTVYQLLSACSH--FEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQ 129 (263)
T ss_dssp CSCCSEEEEETCTTCCGGGTTGGGG--CSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHH
T ss_pred CCCCcEEEEeccCCCHHHHHHhccc--CCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHH
Confidence 3457899999999998876555442 258999999999999999887543211 0
Q ss_pred ----cEEEEEcccccc-----cccCCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcc
Q 020573 248 ----IIEIRQGSWFGK-----LKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASM 318 (324)
Q Consensus 248 ----rv~~~~gD~~~~-----l~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~ 318 (324)
...+...|..+. .....++||+|++. .+..|-+. ..+.++.++++++++
T Consensus 130 ~~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~--------------~~l~~i~~--------~~~~~~~~l~~~~~~ 187 (263)
T d2g72a1 130 LRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSA--------------FCLEAVSP--------DLASFQRALDHITTL 187 (263)
T ss_dssp HHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEE--------------SCHHHHCS--------SHHHHHHHHHHHHTT
T ss_pred hhhhhhccccccccCCCccccCCcCcCccCeeeeH--------------HHHHHHcc--------CHHHHHHHHHHHHHH
Confidence 012334454432 11224579999982 22222111 135577899999999
Q ss_pred cCCCCC
Q 020573 319 LKPDKW 324 (324)
Q Consensus 319 LkpgG~ 324 (324)
|||||+
T Consensus 188 LkPGG~ 193 (263)
T d2g72a1 188 LRPGGH 193 (263)
T ss_dssp EEEEEE
T ss_pred cCCCCE
Confidence 999995
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=98.88 E-value=1.5e-09 Score=99.60 Aligned_cols=108 Identities=14% Similarity=0.094 Sum_probs=82.6
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHc--C--CCCcEEEEEcccccccccCCCCeeEE
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRY--G--LQDIIEIRQGSWFGKLKDVEGKLSGV 270 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~--g--l~~rv~~~~gD~~~~l~~~~~~fDlI 270 (324)
.+++||.+|.|.|..+..+.+. .+..+|++||++++.+++|+++.... + -.+|++++.+|+.+.+....++||+|
T Consensus 77 ~pk~VLiiG~G~G~~~~~ll~~-~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvI 155 (312)
T d1uira_ 77 EPKRVLIVGGGEGATLREVLKH-PTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV 155 (312)
T ss_dssp CCCEEEEEECTTSHHHHHHTTS-TTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred CcceEEEeCCCchHHHHHHHhc-CCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccEE
Confidence 4679999999999999999886 36789999999999999999987542 1 24589999999998877666799999
Q ss_pred EEcCC--CCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 271 VSNPP--YIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 271 VsNPP--Yi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
+.+++ +.... ++. .|. -+.+++.+.+.|+|||+
T Consensus 156 i~D~~dp~~~~~-----~~~--------~L~--------t~eF~~~~~~~L~p~Gv 190 (312)
T d1uira_ 156 IIDLTDPVGEDN-----PAR--------LLY--------TVEFYRLVKAHLNPGGV 190 (312)
T ss_dssp EEECCCCBSTTC-----GGG--------GGS--------SHHHHHHHHHTEEEEEE
T ss_pred EEeCCCcccccc-----hhh--------hhh--------hHHHHHHHHHhcCCCce
Confidence 98753 32111 000 011 13678888999999995
|
| >d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase AviRa domain: rRNA methyltransferase AviRa species: Streptomyces viridochromogenes [TaxId: 1938]
Probab=98.83 E-value=1.5e-09 Score=96.47 Aligned_cols=84 Identities=17% Similarity=0.009 Sum_probs=66.6
Q ss_pred CCCeEEEEcCCccHHHHHHHHHh---------------------------------------CCCcEEEEEeCCHHHHHH
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVL---------------------------------------GSKGSIIAVDLNPLAAAV 235 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~---------------------------------------~p~~~V~gvDis~~al~~ 235 (324)
.+..++|.+||||+|.+..|... .....++|.|+++.+++.
T Consensus 50 ~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~~~i~G~D~d~~ai~~ 129 (249)
T d1o9ga_ 50 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQA 129 (249)
T ss_dssp SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred CCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccccCCccccccCHHHHHH
Confidence 34579999999999999988531 001357899999999999
Q ss_pred H---HHHHHHcCCCCcEEEEEccccccccc----CCCCeeEEEEcCCCCC
Q 020573 236 A---AFNAQRYGLQDIIEIRQGSWFGKLKD----VEGKLSGVVSNPPYIP 278 (324)
Q Consensus 236 A---r~N~~~~gl~~rv~~~~gD~~~~l~~----~~~~fDlIVsNPPYi~ 278 (324)
| ++|+++.|+.+.+++.+.|+|+..+. .....++||+||||..
T Consensus 130 A~~~r~n~~~Agl~~~i~i~~~d~f~~~~~~~~~~~~~~GlIVtNPPYGE 179 (249)
T d1o9ga_ 130 ARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGE 179 (249)
T ss_dssp HHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGG
T ss_pred HHHHHHHHHHcCCCceeeeeecchhccCcchhccCCCCCCEEEeCCCccc
Confidence 9 56999999999999999999874321 1346799999999974
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.83 E-value=2.8e-09 Score=100.17 Aligned_cols=81 Identities=12% Similarity=0.003 Sum_probs=66.7
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCC--------------cEEEEEccccccc
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQD--------------IIEIRQGSWFGKL 260 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~--------------rv~~~~gD~~~~l 260 (324)
++.+|||..||||..++..|++. +..+|+++|+|++|++.+++|++.|++.+ .+.+.+.|+...+
T Consensus 45 ~~~~vLD~~sasG~rsiRya~E~-~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~ 123 (375)
T d2dula1 45 NPKIVLDALSATGIRGIRFALET-PAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLM 123 (375)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHS-SCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHH
T ss_pred CCCEEEEcCCCccHHHHHHHHhC-CCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhh
Confidence 35699999999999999999986 56799999999999999999999998653 3667777776544
Q ss_pred ccCCCCeeEEEEcCCCC
Q 020573 261 KDVEGKLSGVVSNPPYI 277 (324)
Q Consensus 261 ~~~~~~fDlIVsNPPYi 277 (324)
......||+|..+| |.
T Consensus 124 ~~~~~~fDvIDiDP-fG 139 (375)
T d2dula1 124 AERHRYFHFIDLDP-FG 139 (375)
T ss_dssp HHSTTCEEEEEECC-SS
T ss_pred HhhcCcCCcccCCC-CC
Confidence 43346899999996 64
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.80 E-value=9.7e-09 Score=92.62 Aligned_cols=91 Identities=16% Similarity=0.235 Sum_probs=72.8
Q ss_pred HHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccc
Q 020573 179 MVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFG 258 (324)
Q Consensus 179 lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~ 258 (324)
+++.+.+.+ ...++..|||+|+|.|+++..|++.. .+|+++|+++.+++..+++...+...++++++.+|+.+
T Consensus 9 i~~kIv~~~----~~~~~d~VlEIGPG~G~LT~~Ll~~~---~~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~ 81 (278)
T d1zq9a1 9 IINSIIDKA----ALRPTDVVLEVGPGTGNMTVKLLEKA---KKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLK 81 (278)
T ss_dssp HHHHHHHHT----CCCTTCEEEEECCTTSTTHHHHHHHS---SEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTT
T ss_pred HHHHHHHHh----CCCCCCEEEEECCCchHHHHHHHhcC---CcEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhh
Confidence 444554444 33456799999999999999999873 69999999999999999988777666789999999987
Q ss_pred ccccCCCCeeEEEEcCCCCCC
Q 020573 259 KLKDVEGKLSGVVSNPPYIPS 279 (324)
Q Consensus 259 ~l~~~~~~fDlIVsNPPYi~~ 279 (324)
... ..++.||+|.||.-+
T Consensus 82 ~~~---~~~~~vV~NLPY~Is 99 (278)
T d1zq9a1 82 TDL---PFFDTCVANLPYQIS 99 (278)
T ss_dssp SCC---CCCSEEEEECCGGGH
T ss_pred hhh---hhhhhhhcchHHHHH
Confidence 422 356789999999643
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=98.75 E-value=1.5e-08 Score=87.63 Aligned_cols=74 Identities=22% Similarity=0.214 Sum_probs=65.8
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEE
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVS 272 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVs 272 (324)
.+.+++|+|||.|.-++.+|-.+ |+.+|+.+|.+..-+...++-+...++.+ ++++++...+... ..+||+|++
T Consensus 65 ~~~~ilDiGsGaG~PGi~laI~~-p~~~~~Lves~~KK~~FL~~~~~~L~L~n-v~v~~~R~E~~~~--~~~fD~V~s 138 (207)
T d1jsxa_ 65 QGERFIDVGTGPGLPGIPLSIVR-PEAHFTLLDSLGKRVRFLRQVQHELKLEN-IEPVQSRVEEFPS--EPPFDGVIS 138 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHHTTCSS-EEEEECCTTTSCC--CSCEEEEEC
T ss_pred cCCceeeeeccCCceeeehhhhc-ccceEEEEecchHHHHHHHHHHHHcCCcc-eeeeccchhhhcc--ccccceehh
Confidence 45699999999999999999875 89999999999999999999999999975 9999999887433 358999998
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=98.74 E-value=7.6e-09 Score=94.06 Aligned_cols=152 Identities=11% Similarity=0.037 Sum_probs=100.8
Q ss_pred cCCCceeEEe-cccccCeeeeeeCCcccccch----HHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCC
Q 020573 145 KRKPFQYLVG-CEHWRDLVLSVEEGVFIPRPE----TELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGS 219 (324)
Q Consensus 145 ~~~pl~yi~g-~~~f~~l~~~v~~~vliPrp~----te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p 219 (324)
..-+.|.|.- +..-+|.-+.++..+-+-..+ .|.++...+-. ...+++||-+|.|.|.++..+.+.. +
T Consensus 40 ~~S~yQ~i~i~~s~~~G~~l~LDg~~q~~~~De~~YhE~l~h~pl~~------~~~pk~VLiiGgG~G~~~r~~l~~~-~ 112 (295)
T d1inla_ 40 GQSDIQRIDIFENPDLGVVFALDGITMTTEKDEFMYHEMLAHVPMFL------HPNPKKVLIIGGGDGGTLREVLKHD-S 112 (295)
T ss_dssp EECSSCEEEEEEETTTEEEEEETTEEEEETTTHHHHHHHHHHHHHHH------SSSCCEEEEEECTTCHHHHHHTTST-T
T ss_pred cCCCCcEEEEEEcCCcceEEEECCEEEEecCchhhhhhhhcchhHhh------CCCCceEEEecCCchHHHHHHHhcC-C
Confidence 3456776643 223345556666554444323 34444332221 1246799999999999999998863 6
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHHcC--C-CCcEEEEEcccccccccCCCCeeEEEEcCCCCCCCCcccchhhhhcccccc
Q 020573 220 KGSIIAVDLNPLAAAVAAFNAQRYG--L-QDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRL 296 (324)
Q Consensus 220 ~~~V~gvDis~~al~~Ar~N~~~~g--l-~~rv~~~~gD~~~~l~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~ 296 (324)
..+|++||++++.+++|++....+. + .+|++++.+|..+.+....++||+|+.+.+--... |..
T Consensus 113 ~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi~D~~dp~~~-------------~~~ 179 (295)
T d1inla_ 113 VEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIIIDSTDPTAG-------------QGG 179 (295)
T ss_dssp CSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEEEC----------------------
T ss_pred CceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEEEEcCCCCCcC-------------chh
Confidence 6899999999999999999765432 2 46899999999998877678999999985421100 000
Q ss_pred cccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 297 ALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 297 aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
.|. -+++++.+.+.|+|||+
T Consensus 180 ~L~--------t~efy~~~~~~L~~~Gi 199 (295)
T d1inla_ 180 HLF--------TEEFYQACYDALKEDGV 199 (295)
T ss_dssp -CC--------SHHHHHHHHHHEEEEEE
T ss_pred hhc--------cHHHHHHHHhhcCCCcE
Confidence 011 13688888999999985
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.70 E-value=2.1e-08 Score=90.72 Aligned_cols=154 Identities=12% Similarity=0.104 Sum_probs=98.9
Q ss_pred CCCceeEEe-cccccCeeeeeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEE
Q 020573 146 RKPFQYLVG-CEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSII 224 (324)
Q Consensus 146 ~~pl~yi~g-~~~f~~l~~~v~~~vliPrp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~ 224 (324)
+-|.|.|.- +...+|..+.++..+-+...+....-+.+.. . .......+++||-+|-|.|.++..+.+.. +..+|+
T Consensus 30 ~S~yQ~I~v~~~~~~g~~L~lDg~~q~~~~de~~Yhe~l~h-~-~l~~~~~pk~vLiiGgG~G~~~~~~l~~~-~~~~v~ 106 (285)
T d2o07a1 30 RSRYQDILVFRSKTYGNVLVLDGVIQCTERDEFSYQEMIAN-L-PLCSHPNPRKVLIIGGGDGGVLREVVKHP-SVESVV 106 (285)
T ss_dssp ECSSSEEEEEEESSSCEEEEETTEEEEETTTHHHHHHHHHH-H-HHTTSSSCCEEEEEECTTSHHHHHHTTCT-TCCEEE
T ss_pred CCCCcEEEEEEeCCCCeEEEECCcEEEecCCHHHHHHHhcc-H-hhhhCcCcCeEEEeCCCchHHHHHHHHcC-Ccceee
Confidence 356676533 2233455666665544433332222222221 1 11122346799999999999999998863 568999
Q ss_pred EEeCCHHHHHHHHHHHHHc---CCCCcEEEEEcccccccccCCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCC
Q 020573 225 AVDLNPLAAAVAAFNAQRY---GLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGG 301 (324)
Q Consensus 225 gvDis~~al~~Ar~N~~~~---gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg 301 (324)
.||++++.+++|++....+ --.+|++++.+|..+.+....++||+|+++++- +......
T Consensus 107 ~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi~D~~~-p~~~~~~----------------- 168 (285)
T d2o07a1 107 QCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVIITDSSD-PMGPAES----------------- 168 (285)
T ss_dssp EEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEEEECC--------------------------
T ss_pred eccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCEEEEcCCC-CCCcccc-----------------
Confidence 9999999999999876432 124689999999998876656799999998532 1110000
Q ss_pred CCcHHHHHHHHHHHhcccCCCCC
Q 020573 302 VDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 302 ~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
-.-+++++.+.+.|+|||+
T Consensus 169 ----L~t~eF~~~~~~~L~~~Gi 187 (285)
T d2o07a1 169 ----LFKESYYQLMKTALKEDGV 187 (285)
T ss_dssp -------CHHHHHHHHHEEEEEE
T ss_pred ----cccHHHHHHHHHhcCCCCe
Confidence 1123688889999999995
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.69 E-value=1.3e-08 Score=91.74 Aligned_cols=105 Identities=10% Similarity=0.085 Sum_probs=78.3
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHH---------cCCCCcEEEEEcccccccccCCC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR---------YGLQDIIEIRQGSWFGKLKDVEG 265 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~---------~gl~~rv~~~~gD~~~~l~~~~~ 265 (324)
.+++||.+|.|.|..+..+.+. +..+|++||++++.+++|++.... ....+|++++.+|..+.+.. .+
T Consensus 72 ~p~~vLiiG~G~G~~~~~~l~~--~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~-~~ 148 (276)
T d1mjfa_ 72 KPKRVLVIGGGDGGTVREVLQH--DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-NR 148 (276)
T ss_dssp CCCEEEEEECTTSHHHHHHTTS--CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-CC
T ss_pred CCceEEEecCCchHHHHHHHHh--CCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhc-cC
Confidence 4679999999999999988875 446999999999999999975422 12356899999999887654 47
Q ss_pred CeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 266 KLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 266 ~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
+||+|+.+.+-- ...... .+ -+.+++.+.+.|+|||+
T Consensus 149 ~yDvIi~D~~~~-~~~~~~------L~---------------t~eF~~~~~~~L~~~Gv 185 (276)
T d1mjfa_ 149 GFDVIIADSTDP-VGPAKV------LF---------------SEEFYRYVYDALNNPGI 185 (276)
T ss_dssp CEEEEEEECCCC-C-----------TT---------------SHHHHHHHHHHEEEEEE
T ss_pred CCCEEEEeCCCC-CCCccc------cc---------------CHHHHHhhHhhcCCCce
Confidence 899999987532 111000 11 13678888999999995
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=98.65 E-value=1e-09 Score=97.44 Aligned_cols=82 Identities=15% Similarity=0.201 Sum_probs=65.0
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEE
Q 020573 193 GLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVS 272 (324)
Q Consensus 193 ~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVs 272 (324)
..++.+|||+|||+|+++..|++.. .+|+|+|+++.+++.++++.. ...+++++++|+.+.- .....++.||+
T Consensus 27 ~~~~d~VLEIGpG~G~LT~~L~~~~---~~v~aIE~D~~l~~~l~~~~~---~~~n~~ii~~D~l~~~-~~~~~~~~vv~ 99 (245)
T d1yuba_ 27 LKETDTVYEIGTGKGHLTTKLAKIS---KQVTSIELDSHLFNLSSEKLK---LNTRVTLIHQDILQFQ-FPNKQRYKIVG 99 (245)
T ss_dssp CCSSEEEEECSCCCSSCSHHHHHHS---SEEEESSSSCSSSSSSSCTTT---TCSEEEECCSCCTTTT-CCCSSEEEEEE
T ss_pred CCCCCeEEEECCCccHHHHHHHhhc---CceeEeeecccchhhhhhhhh---hccchhhhhhhhhccc-cccceeeeEee
Confidence 3456789999999999999999973 699999999999888776543 2346999999998742 22357788999
Q ss_pred cCCCCCCCC
Q 020573 273 NPPYIPSDD 281 (324)
Q Consensus 273 NPPYi~~~~ 281 (324)
|.||.-+..
T Consensus 100 NLPY~Ist~ 108 (245)
T d1yuba_ 100 NIPYHLSTQ 108 (245)
T ss_dssp ECCSSSCHH
T ss_pred eeehhhhHH
Confidence 999976643
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=98.64 E-value=5.4e-08 Score=87.48 Aligned_cols=149 Identities=15% Similarity=0.116 Sum_probs=99.2
Q ss_pred CCceeEEe-cccccCeeeeeeCCcccccch----HHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCc
Q 020573 147 KPFQYLVG-CEHWRDLVLSVEEGVFIPRPE----TELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKG 221 (324)
Q Consensus 147 ~pl~yi~g-~~~f~~l~~~v~~~vliPrp~----te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~ 221 (324)
-+.|.|.= +...+|..+.++..+-+-..+ +|.++...+... ..+++||-+|-|.|..+..+.+.. +..
T Consensus 28 s~yQ~I~v~~~~~~g~~L~LDg~~q~~~~de~~Yhe~l~h~~l~~~------~~p~~vLiiGgG~G~~~~~~l~~~-~~~ 100 (274)
T d1iy9a_ 28 TEFQHLEMVETEEFGNMLFLDGMVMTSEKDEFVYHEMVAHVPLFTH------PNPEHVLVVGGGDGGVIREILKHP-SVK 100 (274)
T ss_dssp CSSCEEEEEEETTTEEEEEETTEEEEETTTHHHHHHHHHHHHHHHS------SSCCEEEEESCTTCHHHHHHTTCT-TCS
T ss_pred CCCcEEEEEEcCCcCeEEEECCceeeecCchhhchhhhccchhhcc------CCcceEEecCCCCcHHHHHHHhcC-Ccc
Confidence 45555532 223335555555444333222 444444333221 245799999999999999999863 567
Q ss_pred EEEEEeCCHHHHHHHHHHHHHc-C--CCCcEEEEEcccccccccCCCCeeEEEEcCCCCCCCCcccchhhhhcccccccc
Q 020573 222 SIIAVDLNPLAAAVAAFNAQRY-G--LQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLAL 298 (324)
Q Consensus 222 ~V~gvDis~~al~~Ar~N~~~~-g--l~~rv~~~~gD~~~~l~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL 298 (324)
+|+.||++++.++.|++....+ + -..|++++.+|..+.+.....+||+|+.+++- +...- ..|
T Consensus 101 ~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvIi~D~~~-p~~~~-------------~~L 166 (274)
T d1iy9a_ 101 KATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMVDSTE-PVGPA-------------VNL 166 (274)
T ss_dssp EEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEESCSS-CCSCC-------------CCC
T ss_pred eEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEEEEcCCC-CCCcc-------------hhh
Confidence 9999999999999999986532 2 13589999999998777666799999998652 11100 001
Q ss_pred cCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 299 DGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 299 ~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
. -+.+++.+.+.|+|||+
T Consensus 167 ~--------t~eFy~~~~~~L~~~Gv 184 (274)
T d1iy9a_ 167 F--------TKGFYAGIAKALKEDGI 184 (274)
T ss_dssp S--------TTHHHHHHHHHEEEEEE
T ss_pred c--------cHHHHHHHHhhcCCCce
Confidence 1 12678888999999985
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.59 E-value=1.2e-07 Score=83.58 Aligned_cols=93 Identities=19% Similarity=0.132 Sum_probs=71.3
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNP 274 (324)
...+|+|+|||+|.+++.+++++ |+.+++..|+ |+.+ +..+..+|++++.+|+++.++ ..|++++.
T Consensus 81 ~~~~vlDiGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~vi-------~~~~~~~ri~~~~gd~~~~~p----~~D~~~l~- 146 (244)
T d1fp1d2 81 GISTLVDVGGGSGRNLELIISKY-PLIKGINFDL-PQVI-------ENAPPLSGIEHVGGDMFASVP----QGDAMILK- 146 (244)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHH-------TTCCCCTTEEEEECCTTTCCC----CEEEEEEE-
T ss_pred CCcEEEEecCCCcHHHHHHHHHC-CCCeEEEecc-hhhh-------hccCCCCCeEEecCCcccccc----cceEEEEe-
Confidence 34689999999999999999997 9999999998 4443 334556789999999998654 45988872
Q ss_pred CCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 275 PYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
.+.++-| -+....+++++++.|+|||.
T Consensus 147 -------------~vLh~~~----------de~~~~iL~~~~~aL~pgg~ 173 (244)
T d1fp1d2 147 -------------AVCHNWS----------DEKCIEFLSNCHKALSPNGK 173 (244)
T ss_dssp -------------SSGGGSC----------HHHHHHHHHHHHHHEEEEEE
T ss_pred -------------hhhhhCC----------HHHHHHHHHHHHHHcCCCcE
Confidence 2222222 24456799999999999983
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=98.54 E-value=3.6e-08 Score=90.10 Aligned_cols=150 Identities=14% Similarity=0.104 Sum_probs=97.6
Q ss_pred CCCceeEEe-cccccCeeeeeeCCccccc----chHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCC
Q 020573 146 RKPFQYLVG-CEHWRDLVLSVEEGVFIPR----PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSK 220 (324)
Q Consensus 146 ~~pl~yi~g-~~~f~~l~~~v~~~vliPr----p~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~ 220 (324)
.-+.|.|.- +..-+|..+.++..+-+-. ...|.++...+-.. ..+++||-+|.|.|.++..+.+.. +.
T Consensus 58 ~S~yQ~I~i~~~~~~G~~L~LDg~~q~~e~de~~YhE~l~h~pl~~~------~~pk~VLIiGgG~G~~~rellk~~-~v 130 (312)
T d2b2ca1 58 KSKYQDVLVFESTTYGNVLVLDGIVQATERDEFSYQEMLAHLPMFAH------PDPKRVLIIGGGDGGILREVLKHE-SV 130 (312)
T ss_dssp ECSSCEEEEEEETTTEEEEEETTEEEEESSSSSHHHHHHHHHHHHHS------SSCCEEEEESCTTSHHHHHHTTCT-TC
T ss_pred CCCCeEEEEEEcCCcCCEEEECCceeeecccHHHHHHHhhhHHHhcC------CCCCeEEEeCCCchHHHHHHHHcC-Cc
Confidence 345666533 2223355555554433322 23555555443221 246799999999999999999863 56
Q ss_pred cEEEEEeCCHHHHHHHHHHHHHcC---CCCcEEEEEcccccccccCCCCeeEEEEcCCCCCCCCcccchhhhhccccccc
Q 020573 221 GSIIAVDLNPLAAAVAAFNAQRYG---LQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLA 297 (324)
Q Consensus 221 ~~V~gvDis~~al~~Ar~N~~~~g---l~~rv~~~~gD~~~~l~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~a 297 (324)
.+|+.||++++.++.|++....+. -.+|++++.+|..+.+....++||+||.+.+- +.. ++ ..
T Consensus 131 ~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvII~D~~d-p~~-----~~--------~~ 196 (312)
T d2b2ca1 131 EKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVIITDSSD-PVG-----PA--------ES 196 (312)
T ss_dssp CEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEEECCC----------------------
T ss_pred ceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEEEEcCCC-CCC-----cc--------hh
Confidence 799999999999999998764321 13589999999998877666799999998542 110 00 01
Q ss_pred ccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 298 LDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 298 L~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
-.-+.|++.+.+.|+|||+
T Consensus 197 --------L~t~eFy~~~~~~L~~~Gi 215 (312)
T d2b2ca1 197 --------LFGQSYYELLRDALKEDGI 215 (312)
T ss_dssp -------------HHHHHHHHEEEEEE
T ss_pred --------hhhHHHHHHHHhhcCCCcE
Confidence 1224688899999999985
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.49 E-value=1.3e-07 Score=83.38 Aligned_cols=91 Identities=18% Similarity=0.159 Sum_probs=69.7
Q ss_pred CCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcCC
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPP 275 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNPP 275 (324)
..+|+|+|||+|.+++.+++++ |+.+++..|+ ++.++ ..+..+|++++.+|++++.+ .+|++++.
T Consensus 81 ~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~vi~-------~~~~~~rv~~~~gD~f~~~p----~aD~~~l~-- 145 (244)
T d1fp2a2 81 LESIVDVGGGTGTTAKIICETF-PKLKCIVFDR-PQVVE-------NLSGSNNLTYVGGDMFTSIP----NADAVLLK-- 145 (244)
T ss_dssp CSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHT-------TCCCBTTEEEEECCTTTCCC----CCSEEEEE--
T ss_pred ceEEEEecCCccHHHHHHHHhC-CCCeEEEecC-HHHHH-------hCcccCceEEEecCcccCCC----CCcEEEEE--
Confidence 3589999999999999999997 8999999998 44443 34566889999999998643 57998873
Q ss_pred CCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCC
Q 020573 276 YIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDK 323 (324)
Q Consensus 276 Yi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG 323 (324)
.+.++-+ -+...+|++++++.|+|||
T Consensus 146 ------------~vLHdw~----------d~~~~~iL~~~~~al~pgg 171 (244)
T d1fp2a2 146 ------------YILHNWT----------DKDCLRILKKCKEAVTNDG 171 (244)
T ss_dssp ------------SCGGGSC----------HHHHHHHHHHHHHHHSGGG
T ss_pred ------------eecccCC----------hHHHHHHHHHHHHHcCccc
Confidence 2222211 2345579999999999985
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.48 E-value=1.9e-07 Score=84.48 Aligned_cols=107 Identities=17% Similarity=0.174 Sum_probs=81.0
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHc---CCCCcEEEEEcccccccccC-CCCeeEE
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRY---GLQDIIEIRQGSWFGKLKDV-EGKLSGV 270 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~---gl~~rv~~~~gD~~~~l~~~-~~~fDlI 270 (324)
.+++||=+|-|.|.++..+.+.. +..+|++||++++.++.|++....+ .-.+|++++.+|..+.+... +++||+|
T Consensus 80 ~pk~VLiiGgG~G~~~r~~l~~~-~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDvI 158 (290)
T d1xj5a_ 80 NPKKVLVIGGGDGGVLREVARHA-SIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV 158 (290)
T ss_dssp CCCEEEEETCSSSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred CCcceEEecCCchHHHHHHHhcc-cceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccEE
Confidence 46799999999999999998863 6679999999999999999976432 22468999999998877543 4589999
Q ss_pred EEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 271 VSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 271 VsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
+.+.+- +.. ++.. .+ -+.+++.+.+.|+|||+
T Consensus 159 i~D~~d-p~~-----~~~~-L~---------------t~eF~~~~~~~L~~~Gi 190 (290)
T d1xj5a_ 159 IVDSSD-PIG-----PAKE-LF---------------EKPFFQSVARALRPGGV 190 (290)
T ss_dssp EECCCC-TTS-----GGGG-GG---------------SHHHHHHHHHHEEEEEE
T ss_pred EEcCCC-CCC-----cchh-hC---------------CHHHHHHHHHhcCCCcE
Confidence 998552 111 0110 11 23688889999999995
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=98.46 E-value=1.9e-07 Score=78.88 Aligned_cols=117 Identities=23% Similarity=0.273 Sum_probs=88.2
Q ss_pred HHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccc
Q 020573 179 MVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFG 258 (324)
Q Consensus 179 lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~ 258 (324)
|++.+++.+ ...++..++|..+|.|..+..+.+. +++|+|+|.+++|+..|++. ...++.++++++-+
T Consensus 6 ll~Evl~~l----~~~~g~~~vD~T~G~GGhs~~iL~~---~~~viaiD~D~~ai~~a~~~-----~~~~~~~~~~~f~~ 73 (182)
T d1wg8a2 6 LYQEALDLL----AVRPGGVYVDATLGGAGHARGILER---GGRVIGLDQDPEAVARAKGL-----HLPGLTVVQGNFRH 73 (182)
T ss_dssp THHHHHHHH----TCCTTCEEEETTCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHT-----CCTTEEEEESCGGG
T ss_pred HHHHHHHhc----CCCCCCEEEEeCCCCcHHHHHHhcc---cCcEEEEhhhhhHHHHHhhc-----cccceeEeehHHHH
Confidence 556666666 3446789999999999999999885 47999999999999888753 23579999998765
Q ss_pred ccc---c-CCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 259 KLK---D-VEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 259 ~l~---~-~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
... . ..+++|.|+.|..+.. .| ++....|++.+...++.+.+.|++||.
T Consensus 74 ~~~~l~~~~~~~vdgIl~DLGvSs------~q-----------ld~~~re~~~~~~~L~~~~~~lk~gg~ 126 (182)
T d1wg8a2 74 LKRHLAALGVERVDGILADLGVSS------FH-----------LDDPSDELNALKEFLEQAAEVLAPGGR 126 (182)
T ss_dssp HHHHHHHTTCSCEEEEEEECSCCH------HH-----------HHCGGTHHHHHHHHHHHHHHHEEEEEE
T ss_pred HHHHHHHcCCCccCEEEEEccCCH------HH-----------hhcchHHHHHHHHHHHHHHhhhCCCCe
Confidence 211 1 1357999999866532 12 122346888999999999999999983
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=98.41 E-value=1.3e-07 Score=83.79 Aligned_cols=93 Identities=18% Similarity=0.192 Sum_probs=67.5
Q ss_pred HHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccc
Q 020573 179 MVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFG 258 (324)
Q Consensus 179 lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~ 258 (324)
+++.+.+.+ ....+..||++|||+|+++..|++. ..+|+++|+++..++..++... ..++++++++|+.+
T Consensus 9 ~~~~Iv~~~----~~~~~d~vlEIGpG~G~LT~~Ll~~---~~~v~aiEiD~~l~~~L~~~~~---~~~~~~ii~~D~l~ 78 (252)
T d1qyra_ 9 VIDSIVSAI----NPQKGQAMVEIGPGLAALTEPVGER---LDQLTVIELDRDLAARLQTHPF---LGPKLTIYQQDAMT 78 (252)
T ss_dssp HHHHHHHHH----CCCTTCCEEEECCTTTTTHHHHHTT---CSCEEEECCCHHHHHHHHTCTT---TGGGEEEECSCGGG
T ss_pred HHHHHHHhc----CCCCCCEEEEECCCchHHHHHHHcc---CCceEEEEeccchhHHHHHHhh---hccchhHHhhhhhh
Confidence 455555554 2335678999999999999999986 3689999999999998876432 23469999999986
Q ss_pred cccc-C---CCCeeEEEEcCCCCCCCC
Q 020573 259 KLKD-V---EGKLSGVVSNPPYIPSDD 281 (324)
Q Consensus 259 ~l~~-~---~~~fDlIVsNPPYi~~~~ 281 (324)
.... . .++--.||+|.||.-+..
T Consensus 79 ~~~~~~~~~~~~~~~vvgNlPY~Iss~ 105 (252)
T d1qyra_ 79 FNFGELAEKMGQPLRVFGNLPYNISTP 105 (252)
T ss_dssp CCHHHHHHHHTSCEEEEEECCTTTHHH
T ss_pred hcccccccccCCCeEEEecchHHHHHH
Confidence 3211 0 123347999999976543
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=98.35 E-value=4.7e-07 Score=79.98 Aligned_cols=81 Identities=22% Similarity=0.194 Sum_probs=68.4
Q ss_pred CeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCC--------CCcEEEEEcccccccccCCCCee
Q 020573 197 GFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGL--------QDIIEIRQGSWFGKLKDVEGKLS 268 (324)
Q Consensus 197 ~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl--------~~rv~~~~gD~~~~l~~~~~~fD 268 (324)
.+|||+.+|.|..+..+|.. +++|+++|.++....+.+.++++... ..|++++++|..+.+.....+||
T Consensus 90 ~~VlD~TaGlG~Da~vlA~~---G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~~~~~~~D 166 (250)
T d2oyra1 90 PDVVDATAGLGRDAFVLASV---GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQ 166 (250)
T ss_dssp CCEEETTCTTCHHHHHHHHH---TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCCS
T ss_pred CEEEECCCcccHHHHHHHhC---CCEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHhccCCCCC
Confidence 48999999999999999986 37899999999999988888876532 23799999999887776667899
Q ss_pred EEEEcCCCCCCC
Q 020573 269 GVVSNPPYIPSD 280 (324)
Q Consensus 269 lIVsNPPYi~~~ 280 (324)
+|..+|+|-...
T Consensus 167 vIYlDPMFp~~~ 178 (250)
T d2oyra1 167 VVYLDPMFPHKQ 178 (250)
T ss_dssp EEEECCCCCCCC
T ss_pred EEEECCCCcccc
Confidence 999999995443
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=98.35 E-value=7.9e-07 Score=78.04 Aligned_cols=76 Identities=16% Similarity=0.077 Sum_probs=64.8
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccc--ccCCCCeeEEEE
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKL--KDVEGKLSGVVS 272 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l--~~~~~~fDlIVs 272 (324)
...+|+|+|||.|.-++.+|-.+ |+.+|+.+|.+..-+...+.-++..++.+ +.++++...+.. ....++||+|++
T Consensus 70 ~~~~ilDiGSGaGfPGi~laI~~-p~~~v~Lves~~KK~~FL~~v~~~L~L~n-~~i~~~R~E~~~~~~~~~~~~D~v~s 147 (239)
T d1xdza_ 70 QVNTICDVGAGAGFPSLPIKICF-PHLHVTIVDSLNKRITFLEKLSEALQLEN-TTFCHDRAETFGQRKDVRESYDIVTA 147 (239)
T ss_dssp GCCEEEEECSSSCTTHHHHHHHC-TTCEEEEEESCHHHHHHHHHHHHHHTCSS-EEEEESCHHHHTTCTTTTTCEEEEEE
T ss_pred CCCeEEeecCCCchHHHHHHHhC-CCccceeecchHHHHHHHHHHHHHhCCCC-cEEEeehhhhccccccccccceEEEE
Confidence 35689999999999999999876 89999999999999999999999999975 999998775422 122468999999
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=98.33 E-value=8.3e-07 Score=75.23 Aligned_cols=106 Identities=19% Similarity=0.188 Sum_probs=67.9
Q ss_pred CCCeEEEEcCCccHHH----HHHHHHhC---CCcEEEEEeCCHHHHHHHHHHH--------------HHc----CC----
Q 020573 195 RDGFWVDLGTGSGAIA----IGIARVLG---SKGSIIAVDLNPLAAAVAAFNA--------------QRY----GL---- 245 (324)
Q Consensus 195 ~~~~VLDLGcGsG~ia----i~la~~~~---p~~~V~gvDis~~al~~Ar~N~--------------~~~----gl---- 245 (324)
+..+|++.|||||--+ +.+..... ...+|+|+|+|+.+++.|++.. .++ +.
T Consensus 24 ~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~~ 103 (193)
T d1af7a2 24 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 103 (193)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCccc
Confidence 3459999999999744 43443321 2358999999999999998532 111 00
Q ss_pred --------CCcEEEEEcccccccccCCCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhc
Q 020573 246 --------QDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTAS 317 (324)
Q Consensus 246 --------~~rv~~~~gD~~~~l~~~~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~ 317 (324)
...+.+...+.........++||+|+|- .|..|-. -+.-+++++..++
T Consensus 104 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CR--------------NVLiYf~----------~~~~~~vl~~l~~ 159 (193)
T d1af7a2 104 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCR--------------NVMIYFD----------KTTQEDILRRFVP 159 (193)
T ss_dssp EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEEC--------------SSGGGSC----------HHHHHHHHHHHGG
T ss_pred eeehHHHHHHHHHHhhhhccccccCCCCCccEEEee--------------hhHHhcC----------HHHHHHHHHHHHH
Confidence 0235566666655333334789999992 2222211 1234578999999
Q ss_pred ccCCCCC
Q 020573 318 MLKPDKW 324 (324)
Q Consensus 318 ~LkpgG~ 324 (324)
.|+|||+
T Consensus 160 ~L~pGG~ 166 (193)
T d1af7a2 160 LLKPDGL 166 (193)
T ss_dssp GEEEEEE
T ss_pred HhCCCcE
Confidence 9999995
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.29 E-value=8.1e-07 Score=77.98 Aligned_cols=92 Identities=17% Similarity=0.085 Sum_probs=67.1
Q ss_pred CCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcCC
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPP 275 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNPP 275 (324)
..+|+|+|||+|..++.+++++ |+.+++.+|+.+ .+ +.....+++++..+|++++++. .|+++..
T Consensus 82 ~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dlp~-vi-------~~~~~~~r~~~~~~d~~~~~P~----ad~~~l~-- 146 (243)
T d1kyza2 82 LKSLVDVGGGTGAVINTIVSKY-PTIKGINFDLPH-VI-------EDAPSYPGVEHVGGDMFVSIPK----ADAVFMK-- 146 (243)
T ss_dssp CSEEEEETCTTSHHHHHHHHHC-TTSEEEEEECTT-TT-------TTCCCCTTEEEEECCTTTCCCC----CSCEECS--
T ss_pred CcEEEEecCCCcHHHHHHHHHC-CCCeEEEcccHH-hh-------hhcccCCceEEecccccccCCC----cceEEEE--
Confidence 4689999999999999999997 999999999964 33 2334457899999999986542 3433331
Q ss_pred CCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 276 YIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 276 Yi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
.+... -.-+....+++++.+.|+|||.
T Consensus 147 ------------~vlh~----------~~d~~~~~iL~~~~~al~pgg~ 173 (243)
T d1kyza2 147 ------------WICHD----------WSDEHCLKFLKNCYEALPDNGK 173 (243)
T ss_dssp ------------SSSTT----------SCHHHHHHHHHHHHHHCCSSSC
T ss_pred ------------EEeec----------CCHHHHHHHHHHHHHhcCCCce
Confidence 11111 1134556799999999999984
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=98.06 E-value=7e-06 Score=68.74 Aligned_cols=104 Identities=23% Similarity=0.210 Sum_probs=72.2
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc-------cCCCC
Q 020573 194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK-------DVEGK 266 (324)
Q Consensus 194 ~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~-------~~~~~ 266 (324)
.++.+|+||||+.|.++..+.+..+....|+|+|+.+. ..+ +.+.++++|..+... ...++
T Consensus 21 k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~-----------~~i-~~~~~~~~d~~~~~~~~~~~~~~~~~~ 88 (180)
T d1ej0a_ 21 KPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM-----------DPI-VGVDFLQGDFRDELVMKALLERVGDSK 88 (180)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC-----------CCC-TTEEEEESCTTSHHHHHHHHHHHTTCC
T ss_pred CCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc-----------ccc-CCceEeecccccchhhhhhhhhccCcc
Confidence 35679999999999999999988777789999998751 123 359999999876321 12468
Q ss_pred eeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 267 LSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 267 fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
+|+|+|+--.-.++.. ++ .|. .-+++....+.-|.++||+||.
T Consensus 89 ~DlVlSD~ap~~sg~~-----~~-d~~---------~~~~L~~~~l~~a~~~Lk~gG~ 131 (180)
T d1ej0a_ 89 VQVVMSDMAPNMSGTP-----AV-DIP---------RAMYLVELALEMCRDVLAPGGS 131 (180)
T ss_dssp EEEEEECCCCCCCSCH-----HH-HHH---------HHHHHHHHHHHHHHHHEEEEEE
T ss_pred eeEEEecccchhcccc-----hh-HHH---------HHHHHHHHHHHhhhhccCCCCc
Confidence 9999997322211110 00 110 1156667788899999999983
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=97.63 E-value=8.1e-05 Score=64.55 Aligned_cols=106 Identities=19% Similarity=0.223 Sum_probs=67.5
Q ss_pred CCceeEE-ecccccCeeeeeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHh---CCCcE
Q 020573 147 KPFQYLV-GCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVL---GSKGS 222 (324)
Q Consensus 147 ~pl~yi~-g~~~f~~l~~~v~~~vliPrp~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~---~p~~~ 222 (324)
..+.|.- ....|.|+.+ +.-|..-.+...++..+ ++++||++|++.|.-++.++..+ +++++
T Consensus 45 ~~~~~~~~~~~~w~G~p~-------~k~p~d~~~~~eli~~~-------KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~k 110 (232)
T d2bm8a1 45 RDLGYSDFSPYQWRGLRM-------LKDPDTQAVYHDMLWEL-------RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQ 110 (232)
T ss_dssp CSCSSCCSSCCEETTEEC-------CSCHHHHHHHHHHHHHH-------CCSEEEEECCTTSHHHHHHHHHHHHTTCCCE
T ss_pred hhcCcccCcCccccceec-------ccCHHHHHHHHHHHHHh-------CCCEEEEECCCCchHHHHHHHHHHhcCCCce
Confidence 4455541 3445666653 34455555666666555 46799999999999888777543 46789
Q ss_pred EEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccc--cccC-CCCeeEEEE
Q 020573 223 IIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGK--LKDV-EGKLSGVVS 272 (324)
Q Consensus 223 V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~--l~~~-~~~fDlIVs 272 (324)
|+|+|+++.....+.. ...++++++||..+. +... ...+|+|+.
T Consensus 111 I~giDId~~~~~~~~~------~~~~I~~i~gDs~~~~~~~~l~~~~~dlIfI 157 (232)
T d2bm8a1 111 VIGIDRDLSRCQIPAS------DMENITLHQGDCSDLTTFEHLREMAHPLIFI 157 (232)
T ss_dssp EEEEESCCTTCCCCGG------GCTTEEEEECCSSCSGGGGGGSSSCSSEEEE
T ss_pred EEecCcChhhhhhhhc------cccceeeeecccccHHHHHHHHhcCCCEEEE
Confidence 9999998754332221 235799999997653 2221 235777766
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.48 E-value=0.00033 Score=63.44 Aligned_cols=59 Identities=8% Similarity=-0.025 Sum_probs=48.4
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccc
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFG 258 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~ 258 (324)
.+..|||+|.|.|.++..+.... ...+|+++|+++..++..++... .++++++++|.+.
T Consensus 43 ~~~~VlEIGPG~G~LT~~Ll~~~-~~~~v~~iE~D~~~~~~L~~~~~----~~~~~ii~~D~l~ 101 (322)
T d1i4wa_ 43 EELKVLDLYPGVGIQSAIFYNKY-CPRQYSLLEKRSSLYKFLNAKFE----GSPLQILKRDPYD 101 (322)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHH-CCSEEEEECCCHHHHHHHHHHTT----TSSCEEECSCTTC
T ss_pred CCCeEEEECCCCCHHHHHHHhcC-CCCEEEEEECCHHHHHHHHHhcc----CCCcEEEeCchhh
Confidence 45689999999999999999874 22589999999999988876532 3469999999875
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=97.16 E-value=0.00039 Score=59.47 Aligned_cols=57 Identities=19% Similarity=0.212 Sum_probs=46.7
Q ss_pred HHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 020573 177 ELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ 241 (324)
Q Consensus 177 e~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~ 241 (324)
..|++.+.+.. . .++..|||.+||||..++++.+. +.+.+|+|++++.+++|++.++
T Consensus 199 ~~L~~~lI~~~-s----~~gd~VlDpF~GSGTT~~aa~~~---~R~~ig~El~~~y~~~a~~Rl~ 255 (256)
T d1g60a_ 199 RDLIERIIRAS-S----NPNDLVLDCFMGSGTTAIVAKKL---GRNFIGCDMNAEYVNQANFVLN 255 (256)
T ss_dssp HHHHHHHHHHH-C----CTTCEEEESSCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHh-C----CCCCEEEECCCCchHHHHHHHHc---CCeEEEEeCCHHHHHHHHHHHc
Confidence 45677766665 2 24679999999999999887774 4799999999999999999875
|
| >d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HaeIII species: Haemophilus aegyptius [TaxId: 197575]
Probab=97.02 E-value=0.0018 Score=56.92 Aligned_cols=75 Identities=19% Similarity=0.248 Sum_probs=58.1
Q ss_pred eEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcCCCC
Q 020573 198 FWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYI 277 (324)
Q Consensus 198 ~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNPPYi 277 (324)
+|+||+||.|.+.+.+-+. + -..+.++|+++.|.+.-+.|. . -.++.+|..+.....-.++|+++.-||+-
T Consensus 2 k~~~lF~G~Gg~~~gl~~a-G-~~~~~a~e~d~~a~~~~~~N~-----~--~~~~~~Di~~~~~~~~~~~dll~~g~PCq 72 (324)
T d1dcta_ 2 NLISLFSGAGGLDLGFQKA-G-FRIICANEYDKSIWKTYESNH-----S--AKLIKGDISKISSDEFPKCDGIIGGPPCQ 72 (324)
T ss_dssp EEEEESCSSCHHHHHHHHH-T-CEEEEEEECCHHHHHHHHHHC-----C--SEEEESCTTTSCGGGSCCCSEEEECCCCT
T ss_pred eEEEeCcCcCHHHHHHHHC-C-CEEEEEEeCCHHHHHHHHHHC-----C--CCCccCChhhCCHhHcccccEEeeccccc
Confidence 6999999999999988765 3 245779999999999888873 2 35678998774332235799999999998
Q ss_pred CCCC
Q 020573 278 PSDD 281 (324)
Q Consensus 278 ~~~~ 281 (324)
+-+.
T Consensus 73 ~fS~ 76 (324)
T d1dcta_ 73 SWSE 76 (324)
T ss_dssp TTSS
T ss_pred cccc
Confidence 6553
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=96.91 E-value=0.001 Score=57.51 Aligned_cols=59 Identities=15% Similarity=0.091 Sum_probs=48.6
Q ss_pred HHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHc
Q 020573 177 ELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRY 243 (324)
Q Consensus 177 e~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~ 243 (324)
..|++.+.+.. . .++..|||.++|||..++++.+. +.+.+|+|++++.+++|+++++..
T Consensus 194 ~~L~~~~I~~~-s----~~gdiVLDpF~GSGTT~~Aa~~l---gR~~ig~El~~~y~~~a~~Ri~~~ 252 (279)
T d1eg2a_ 194 AAVIERLVRAL-S----HPGSTVLDFFAGSGVTARVAIQE---GRNSICTDAAPVFKEYYQKQLTFL 252 (279)
T ss_dssp HHHHHHHHHHH-S----CTTCEEEETTCTTCHHHHHHHHH---TCEEEEEESSTHHHHHHHHHHHHC
T ss_pred hhHHHHHHHhh-c----CCCCEEEecCCCCcHHHHHHHHh---CCeEEEEeCCHHHHHHHHHHHHHh
Confidence 45677666655 2 24679999999999999988875 479999999999999999998765
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=96.88 E-value=0.00045 Score=60.81 Aligned_cols=60 Identities=20% Similarity=0.225 Sum_probs=47.8
Q ss_pred hHHHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHH
Q 020573 175 ETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR 242 (324)
Q Consensus 175 ~te~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~ 242 (324)
-.+.|++.+.... . .++..|||.+||||..++++.+. +.+.+|+|+++++++.|++.+..
T Consensus 235 kP~~L~~rlI~~~-s----~~gdiVlDpF~GSGTT~~AA~~l---gR~~Ig~El~~~y~~~a~~Rl~~ 294 (320)
T d1booa_ 235 FPAKLPEFFIRML-T----EPDDLVVDIFGGSNTTGLVAERE---SRKWISFEMKPEYVAASAFRFLD 294 (320)
T ss_dssp CCTHHHHHHHHHH-C----CTTCEEEETTCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHGGGSC
T ss_pred CchHHHHHhhhhc-c----cCCCEEEecCCCCcHHHHHHHHc---CCcEEEEeCCHHHHHHHHHHHHh
Confidence 3446777777665 2 24679999999999999987774 57999999999999999877654
|
| >d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HhaI species: Haemophilus haemolyticus [TaxId: 726]
Probab=96.74 E-value=0.002 Score=57.16 Aligned_cols=77 Identities=13% Similarity=0.117 Sum_probs=57.8
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEcC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsNP 274 (324)
.+-+|+||+||.|.+...+-+. + -..|.++|+++.|++.-+.|.. + ..++|..+........+|+|+.-|
T Consensus 10 ~~lrv~~lFsG~Gg~~~gl~~a-G-~~~v~a~e~d~~a~~~~~~N~~-----~---~~~~Di~~~~~~~~~~~Dll~ggp 79 (327)
T d2c7pa1 10 TGLRFIDLFAGLGGFRLALESC-G-AECVYSNEWDKYAQEVYEMNFG-----E---KPEGDITQVNEKTIPDHDILCAGF 79 (327)
T ss_dssp TTCEEEEETCTTTHHHHHHHHT-T-CEEEEEECCCHHHHHHHHHHHS-----C---CCBSCGGGSCGGGSCCCSEEEEEC
T ss_pred CCCeEEEECccccHHHHHHHHC-C-CeEEEEEeCCHHHHHHHHHHCC-----C---CCcCchhcCchhhcceeeeeeccc
Confidence 4679999999999999998764 2 3457889999999999998852 1 124776654332235799999999
Q ss_pred CCCCCCC
Q 020573 275 PYIPSDD 281 (324)
Q Consensus 275 PYi~~~~ 281 (324)
|+-+-+.
T Consensus 80 PCq~fS~ 86 (327)
T d2c7pa1 80 PCQAFSI 86 (327)
T ss_dssp CCTTTCT
T ss_pred ccchhhh
Confidence 9987654
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=96.62 E-value=0.00073 Score=58.76 Aligned_cols=105 Identities=14% Similarity=0.150 Sum_probs=58.8
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEEc
Q 020573 194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN 273 (324)
Q Consensus 194 ~~~~~VLDLGcGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVsN 273 (324)
.+..+|+|||||.|..+..++... +...|.|+|+--.--+ .-...+.++ .+-+.+...+-...+. .+..|+|+|+
T Consensus 65 ~~~~~vvDlG~~pGgws~~~a~~~-~v~~V~g~~iG~d~~e-~P~~~~~~~-~ni~~~~~~~dv~~l~--~~~~D~vlcD 139 (257)
T d2p41a1 65 TPEGKVVDLGCGRGGWSYYCGGLK-NVREVKGLTKGGPGHE-EPIPMSTYG-WNLVRLQSGVDVFFIP--PERCDTLLCD 139 (257)
T ss_dssp CCCEEEEEETCTTSHHHHHHHTST-TEEEEEEECCCSTTSC-CCCCCCSTT-GGGEEEECSCCTTTSC--CCCCSEEEEC
T ss_pred cCCCeEEEecCCCChHHHHHHhhc-CCCceeEEEecCcccc-CCccccccc-cccccchhhhhHHhcC--CCcCCEEEee
Confidence 346689999999999999999863 4567888887311000 000001111 1224555544333232 3689999997
Q ss_pred CCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCC
Q 020573 274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDK 323 (324)
Q Consensus 274 PPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG 323 (324)
-- ++ .-.++| .+ .-. .++++.|.+.|+|||
T Consensus 140 m~--es----s~~~~v-d~------------~Rt-l~vLela~~wLk~gg 169 (257)
T d2p41a1 140 IG--ES----SPNPTV-EA------------GRT-LRVLNLVENWLSNNT 169 (257)
T ss_dssp CC--CC----CSSHHH-HH------------HHH-HHHHHHHHHHCCTTC
T ss_pred CC--CC----CCCchh-hh------------hhH-HHHHHHHHHHcccCC
Confidence 21 11 111222 11 111 157888899999998
|
| >d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNMT2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.22 E-value=0.0031 Score=55.91 Aligned_cols=77 Identities=17% Similarity=0.216 Sum_probs=52.8
Q ss_pred CeEEEEcCCccHHHHHHHHHhCCCc-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccccc-C-CCCeeEEEEc
Q 020573 197 GFWVDLGTGSGAIAIGIARVLGSKG-SIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKD-V-EGKLSGVVSN 273 (324)
Q Consensus 197 ~~VLDLGcGsG~iai~la~~~~p~~-~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~-~-~~~fDlIVsN 273 (324)
.+|+||+||.|.+.+.+-+. +-+. -|.++|+++.|++.-+.|. . ...++.+|..+.... . ...+|+++.-
T Consensus 3 ~kv~~lF~G~Gg~~~gl~~a-G~~~~~~~a~E~~~~a~~~~~~n~-----~-~~~~~~~di~~~~~~~~~~~~~Dll~gg 75 (343)
T d1g55a_ 3 LRVLELYSGVGGMHHALRES-CIPAQVVAAIDVNTVANEVYKYNF-----P-HTQLLAKTIEGITLEEFDRLSFDMILMS 75 (343)
T ss_dssp EEEEEETCTTCHHHHHHHHH-TCSEEEEEEECCCHHHHHHHHHHC-----T-TSCEECSCGGGCCHHHHHHHCCSEEEEC
T ss_pred CEEEEcCcCccHHHHHHHHc-CCCCeEEEEEECCHHHHHHHHHHC-----C-CCCcccCchhhCCHhHcCCCCccEEEee
Confidence 47999999999999888664 3333 3789999999999988873 1 255667777643211 1 1368999999
Q ss_pred CCCCCCC
Q 020573 274 PPYIPSD 280 (324)
Q Consensus 274 PPYi~~~ 280 (324)
||+-+-+
T Consensus 76 pPCq~fS 82 (343)
T d1g55a_ 76 PPCQPFT 82 (343)
T ss_dssp CC-----
T ss_pred ccccccc
Confidence 9987654
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=96.22 E-value=0.00061 Score=58.21 Aligned_cols=61 Identities=21% Similarity=0.266 Sum_probs=41.3
Q ss_pred EEEEcccccccccC-CCCeeEEEEcCCCCCCCC-cccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCC
Q 020573 250 EIRQGSWFGKLKDV-EGKLSGVVSNPPYIPSDD-ISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDK 323 (324)
Q Consensus 250 ~~~~gD~~~~l~~~-~~~fDlIVsNPPYi~~~~-~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG 323 (324)
++++||.++.+..+ ++++|+|+.+|||....+ ..... . .++=++.+..+++++.+.|+|||
T Consensus 6 ~i~~gDcle~l~~lpd~sVdliitdPPY~~~~~~~d~~~-------~------~~~y~~~~~~~~~e~~rvLk~~g 68 (256)
T d1g60a_ 6 KIHQMNCFDFLDQVENKSVQLAVIDPPYNLSKADWDSFD-------S------HNEFLAFTYRWIDKVLDKLDKDG 68 (256)
T ss_dssp SEEECCHHHHHHHSCTTCEEEEEECCCCSSCSSGGGCCS-------S------HHHHHHHHHHHHHHHHHHEEEEE
T ss_pred EEEeccHHHHHhhCcCCCcCEEEECCCCCCCcCcCcCCC-------C------HHHHHHHHHHHHHHhhhccccCc
Confidence 57899998866543 468999999999964321 11000 0 01114566788999999999998
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=96.05 E-value=0.0015 Score=57.29 Aligned_cols=64 Identities=20% Similarity=0.255 Sum_probs=44.0
Q ss_pred EEEEEcccccccccC-CCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCCC
Q 020573 249 IEIRQGSWFGKLKDV-EGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDKW 324 (324)
Q Consensus 249 v~~~~gD~~~~l~~~-~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (324)
-.+++||.++.+..+ ++++|+|+.+|||....+...-.. ...+=++.+...+.++.+.|+++|.
T Consensus 13 ~~l~~GD~le~l~~l~~~sVdli~tDPPY~~~~~~~~~~~------------~~~~y~~~~~~~l~~~~rvLk~~G~ 77 (320)
T d1booa_ 13 GSMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNL------------EQHEYVDWFLSFAKVVNKKLKPDGS 77 (320)
T ss_dssp EEEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCSC------------HHHHHHHHHHHHHHHHHHHEEEEEE
T ss_pred CEEEehhHHHHHhhCccCCCCEEEECCCCcCCCCCCCCCC------------CHHHHHHHHHHHHHHHHHhCcccCc
Confidence 589999998766544 478999999999975432210000 0011156678899999999999984
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=95.62 E-value=0.002 Score=55.53 Aligned_cols=60 Identities=13% Similarity=0.218 Sum_probs=43.7
Q ss_pred EEEEEcccccccccC-CCCeeEEEEcCCCCCCCCcccchhhhhcccccccccCCCCcHHHHHHHHHHHhcccCCCC
Q 020573 249 IEIRQGSWFGKLKDV-EGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPDK 323 (324)
Q Consensus 249 v~~~~gD~~~~l~~~-~~~fDlIVsNPPYi~~~~~~~l~~ev~~~eP~~aL~gg~dGl~~~~~il~~a~~~LkpgG 323 (324)
-.++.||.++.+..+ ++++|+|+.+|||-.... .+ ....+-++.+..+++++.+.|||||
T Consensus 5 ~~~~~~D~le~l~~l~d~SIDliitDPPYn~~~~---------~~------~~~~~y~~~~~~~~~e~~rvLk~~G 65 (279)
T d1eg2a_ 5 HVYDVCDCLDTLAKLPDDSVQLIICDPPYNIMLA---------DW------DDHMDYIGWAKRWLAEAERVLSPTG 65 (279)
T ss_dssp EEEEECCHHHHHHTSCTTCEEEEEECCCSBCCGG---------GG------GTCSSHHHHHHHHHHHHHHHEEEEE
T ss_pred ceEEechHHHHHhhCcCCCccEEEECCCCCCCcc---------cc------cCHHHHHHHHHHHHHHHHHHhCCCc
Confidence 457889998866554 478999999999953211 01 1223447788899999999999998
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=94.87 E-value=0.012 Score=47.80 Aligned_cols=46 Identities=30% Similarity=0.419 Sum_probs=36.7
Q ss_pred CCCCCCeEEEEcCCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 020573 192 DGLRDGFWVDLGTGS-GAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF 238 (324)
Q Consensus 192 ~~~~~~~VLDLGcGs-G~iai~la~~~~p~~~V~gvDis~~al~~Ar~ 238 (324)
+..++.+|+=+|||. |.+++.+++.+ ...+|+++|.+++-++.|++
T Consensus 24 ~~~~g~~VlI~GaG~vGl~~~q~ak~~-Ga~~Vi~~d~~~~r~~~a~~ 70 (174)
T d1jqba2 24 DIEMGSSVVVIGIGAVGLMGIAGAKLR-GAGRIIGVGSRPICVEAAKF 70 (174)
T ss_dssp TCCTTCCEEEECCSHHHHHHHHHHHTT-TCSCEEEECCCHHHHHHHHH
T ss_pred CCCCCCEEEEEcCCcchhhhhhhhhcc-cccccccccchhhhHHHHHh
Confidence 344677888899996 88899999976 23479999999998888864
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.70 E-value=0.068 Score=45.68 Aligned_cols=93 Identities=12% Similarity=0.078 Sum_probs=66.6
Q ss_pred CCCeEEEEcCCccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc---------cCC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVE 264 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~-~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~---------~~~ 264 (324)
+++.+|=-|+++ .|+.++|+.+ ..+++|+.+|.+++.++.+.+.++..+...++.+++.|+.+.-. ...
T Consensus 9 k~Kv~lITGas~-GIG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~~~ 87 (257)
T d1xg5a_ 9 RDRLALVTGASG-GIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQH 87 (257)
T ss_dssp TTCEEEEESTTS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCC-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHHhc
Confidence 466788777665 4555555544 23579999999999999988888888777789999999876311 113
Q ss_pred CCeeEEEEcCCCCCCCCcccchhh
Q 020573 265 GKLSGVVSNPPYIPSDDISGLQVE 288 (324)
Q Consensus 265 ~~fDlIVsNPPYi~~~~~~~l~~e 288 (324)
++.|++|.|-.+.....+..+..+
T Consensus 88 g~iD~lVnnAg~~~~~~~~~~~~~ 111 (257)
T d1xg5a_ 88 SGVDICINNAGLARPDTLLSGSTS 111 (257)
T ss_dssp CCCSEEEECCCCCCCCCTTTCCHH
T ss_pred CCCCEEEecccccCCCccccccHH
Confidence 689999999877666555544433
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.95 E-value=0.059 Score=42.81 Aligned_cols=45 Identities=11% Similarity=0.006 Sum_probs=37.5
Q ss_pred CCCCCCeEEEEcCC-ccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 020573 192 DGLRDGFWVDLGTG-SGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF 238 (324)
Q Consensus 192 ~~~~~~~VLDLGcG-sG~iai~la~~~~p~~~V~gvDis~~al~~Ar~ 238 (324)
...++.+|+-+|+| .|.+++.+++.. +++|+++|.+++.++.|++
T Consensus 24 ~~~~g~~vlI~GaG~vG~~a~q~ak~~--G~~vi~~~~~~~k~~~a~~ 69 (168)
T d1piwa2 24 GCGPGKKVGIVGLGGIGSMGTLISKAM--GAETYVISRSSRKREDAMK 69 (168)
T ss_dssp TCSTTCEEEEECCSHHHHHHHHHHHHH--TCEEEEEESSSTTHHHHHH
T ss_pred CcCCCCEEEEECCCCcchhHHHHhhhc--cccccccccchhHHHHhhc
Confidence 34467899999999 788888889886 5799999999998888775
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=93.71 E-value=0.03 Score=44.99 Aligned_cols=74 Identities=22% Similarity=0.259 Sum_probs=47.9
Q ss_pred CCCCCCeEEEEcCC-ccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEc---cccccccc-CCCC
Q 020573 192 DGLRDGFWVDLGTG-SGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQG---SWFGKLKD-VEGK 266 (324)
Q Consensus 192 ~~~~~~~VLDLGcG-sG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~g---D~~~~l~~-~~~~ 266 (324)
+..++.+|+=+||| .|..++.+++.+ ....|+.+|.+++-++.|++ .|.. +++.. |+.+.+.. ..+.
T Consensus 25 ~~~~g~~VlI~G~G~iG~~~~~~ak~~-g~~~v~~~~~~~~k~~~a~~----~Ga~---~~i~~~~~~~~~~i~~~t~gg 96 (174)
T d1f8fa2 25 KVTPASSFVTWGAGAVGLSALLAAKVC-GASIIIAVDIVESRLELAKQ----LGAT---HVINSKTQDPVAAIKEITDGG 96 (174)
T ss_dssp CCCTTCEEEEESCSHHHHHHHHHHHHH-TCSEEEEEESCHHHHHHHHH----HTCS---EEEETTTSCHHHHHHHHTTSC
T ss_pred CCCCCCEEEEeCCCHHHhhhhhccccc-ccceeeeeccHHHHHHHHHH----cCCe---EEEeCCCcCHHHHHHHHcCCC
Confidence 34567789999998 455677778876 44688999999998888775 3542 23332 22222111 1357
Q ss_pred eeEEEEc
Q 020573 267 LSGVVSN 273 (324)
Q Consensus 267 fDlIVsN 273 (324)
||+|+-.
T Consensus 97 ~D~vid~ 103 (174)
T d1f8fa2 97 VNFALES 103 (174)
T ss_dssp EEEEEEC
T ss_pred CcEEEEc
Confidence 9998863
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=93.56 E-value=0.32 Score=41.28 Aligned_cols=89 Identities=16% Similarity=0.131 Sum_probs=61.9
Q ss_pred CCCeEEEEcCCccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccc----------ccC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKL----------KDV 263 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~-~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l----------~~~ 263 (324)
+++++|=-|+. +.|+.++|+.+ ..+++|+.+|.+++.++.+.+.++..+. ++.++..|+.+.- ...
T Consensus 5 ~gK~alITGas-~GIG~aia~~la~~G~~V~i~~r~~~~l~~~~~~~~~~~~--~~~~~~~D~s~~~~~~~~~~~~~~~~ 81 (258)
T d1ae1a_ 5 KGTTALVTGGS-KGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGL--NVEGSVCDLLSRTERDKLMQTVAHVF 81 (258)
T ss_dssp TTCEEEEESCS-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC--CceEEEeecCCHHHHHHHHHHHHHHh
Confidence 56678877765 55555555443 2357999999999998888888877764 4888899986531 112
Q ss_pred CCCeeEEEEcCCCCCCCCcccch
Q 020573 264 EGKLSGVVSNPPYIPSDDISGLQ 286 (324)
Q Consensus 264 ~~~fDlIVsNPPYi~~~~~~~l~ 286 (324)
.+..|+++.|........+..+.
T Consensus 82 ~g~idilinnag~~~~~~~~~~~ 104 (258)
T d1ae1a_ 82 DGKLNILVNNAGVVIHKEAKDFT 104 (258)
T ss_dssp TSCCCEEEECCCCCCCCCTTTCC
T ss_pred CCCcEEEeccccccccCccccCC
Confidence 36789999998776655554443
|
| >d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RPA4359-like domain: Hypothetical protein RPA4359 species: Rhodopseudomonas palustris [TaxId: 1076]
Probab=93.08 E-value=0.1 Score=47.08 Aligned_cols=74 Identities=24% Similarity=0.325 Sum_probs=45.4
Q ss_pred CCcccccchH-----HHHHHHHHHHhhhcCCCCCCCeEEEEcCCccHHHHHHHHHhC------CCcEEEEEeCCHHHHHH
Q 020573 167 EGVFIPRPET-----ELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLG------SKGSIIAVDLNPLAAAV 235 (324)
Q Consensus 167 ~~vliPrp~t-----e~lve~l~~~l~~~~~~~~~~~VLDLGcGsG~iai~la~~~~------p~~~V~gvDis~~al~~ 235 (324)
.|-|+-.|+. +.+..++.... ..........|+|+|+|+|.++.-+.+.+. ...+++-+|.|+...+.
T Consensus 47 ~GDF~Tsp~is~~Fg~~ia~~~~~~~-~~~~~~~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~ 125 (365)
T d1zkda1 47 EGDFTTSPEISQMFGELLGLWSASVW-KAADEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQK 125 (365)
T ss_dssp ---CCSHHHHCHHHHHHHHHHHHHHH-HHTTCCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHH
T ss_pred CCCeECCCchHHHHHHHHHHHHHHHH-HHhCCCccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHH
Confidence 3456655543 33444444433 222333345799999999999988877642 23579999999986666
Q ss_pred HHHHHH
Q 020573 236 AAFNAQ 241 (324)
Q Consensus 236 Ar~N~~ 241 (324)
-++++.
T Consensus 126 Q~~~l~ 131 (365)
T d1zkda1 126 QQTLLA 131 (365)
T ss_dssp HHHHST
T ss_pred HHHHhc
Confidence 655543
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=92.83 E-value=0.11 Score=42.52 Aligned_cols=47 Identities=30% Similarity=0.252 Sum_probs=38.7
Q ss_pred CCCCCCeEEEEcCCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHH
Q 020573 192 DGLRDGFWVDLGTGS-GAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFN 239 (324)
Q Consensus 192 ~~~~~~~VLDLGcGs-G~iai~la~~~~p~~~V~gvDis~~al~~Ar~N 239 (324)
...++.+||-+|||. |.+++.+++.. ...+|+++|.+++-++.|++.
T Consensus 22 ~v~~G~tVlV~GaG~vGl~a~~~ak~~-ga~~Vi~~d~~~~rl~~a~~~ 69 (195)
T d1kola2 22 GVGPGSTVYVAGAGPVGLAAAASARLL-GAAVVIVGDLNPARLAHAKAQ 69 (195)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEEESCHHHHHHHHHT
T ss_pred CCCCCCEEEEECcCHHHHHHHHHHHhh-cccceeeecccchhhHhhhhc
Confidence 445678999999997 77888888875 456999999999999988764
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=92.76 E-value=0.33 Score=41.00 Aligned_cols=87 Identities=14% Similarity=0.113 Sum_probs=62.4
Q ss_pred CCeEEEEcCCccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc---------cCCC
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVEG 265 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~-p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~---------~~~~ 265 (324)
++.+|=-| |++.|+.++|+.+. .+++|+.+|.+++.++.+.+.++..+. ++.++..|+.+.-. ...+
T Consensus 10 nKvalITG-as~GIG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~g~--~~~~~~~Dvt~~~~v~~~~~~~~~~~g 86 (251)
T d2c07a1 10 NKVALVTG-AGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFGY--ESSGYAGDVSKKEEISEVINKILTEHK 86 (251)
T ss_dssp SCEEEEES-TTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTTC--CEEEEECCTTCHHHHHHHHHHHHHHCS
T ss_pred CCEEEEeC-CCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCC--cEEEEEccCCCHHHHHHHHHHHHHhcC
Confidence 44555556 55668888888763 357999999999999888888876653 58999999876311 1137
Q ss_pred CeeEEEEcCCCCCCCCcccc
Q 020573 266 KLSGVVSNPPYIPSDDISGL 285 (324)
Q Consensus 266 ~fDlIVsNPPYi~~~~~~~l 285 (324)
+.|++|.|........+..+
T Consensus 87 ~iDilvnnag~~~~~~~~~~ 106 (251)
T d2c07a1 87 NVDILVNNAGITRDNLFLRM 106 (251)
T ss_dssp CCCEEEECCCCCCCCCTTTC
T ss_pred Cceeeeeccccccccccccc
Confidence 89999999877655544433
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=92.00 E-value=0.22 Score=42.64 Aligned_cols=80 Identities=13% Similarity=0.056 Sum_probs=57.1
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCC-CcEEEEEcccccccc---------cC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQ-DIIEIRQGSWFGKLK---------DV 263 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~-p~~~V~gvDis~~al~~Ar~N~~~~gl~-~rv~~~~gD~~~~l~---------~~ 263 (324)
+++++|=-|+++ .|+.++|+.+. .+++|+.+|.+++.++.+.+.+...+.. .++.++.+|+.+.-. ..
T Consensus 3 ~gK~alITGas~-GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 81 (274)
T d1xhla_ 3 SGKSVIITGSSN-GIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAK 81 (274)
T ss_dssp TTCEEEETTCSS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCc-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHHHH
Confidence 355666666554 46666665542 3579999999999999998888887654 468999999876311 11
Q ss_pred CCCeeEEEEcCC
Q 020573 264 EGKLSGVVSNPP 275 (324)
Q Consensus 264 ~~~fDlIVsNPP 275 (324)
.++.|++|.|--
T Consensus 82 ~G~iDilVnnAG 93 (274)
T d1xhla_ 82 FGKIDILVNNAG 93 (274)
T ss_dssp HSCCCEEEECCC
T ss_pred cCCceEEEeecc
Confidence 268999999954
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=91.71 E-value=0.42 Score=40.27 Aligned_cols=89 Identities=16% Similarity=0.109 Sum_probs=59.7
Q ss_pred CCCeEEEEcCCccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc---------cCC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVE 264 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~-~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~---------~~~ 264 (324)
+++.+|=-| |++.|+.++|+.+ ..+++|+.+|.+++.++.+.+.+. ..+++.++..|..+.-. ...
T Consensus 5 ~gK~alVTG-as~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (251)
T d1zk4a1 5 DGKVAIITG-GTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVG---TPDQIQFFQHDSSDEDGWTKLFDATEKAF 80 (251)
T ss_dssp TTCEEEETT-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC---CTTTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeC-CCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhC---CCCcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 455666555 5566666666654 135799999999998887766653 34569999999876311 113
Q ss_pred CCeeEEEEcCCCCCCCCcccchh
Q 020573 265 GKLSGVVSNPPYIPSDDISGLQV 287 (324)
Q Consensus 265 ~~fDlIVsNPPYi~~~~~~~l~~ 287 (324)
++.|++|.|--+.....+..+..
T Consensus 81 G~iDiLVnnAg~~~~~~~~~~~~ 103 (251)
T d1zk4a1 81 GPVSTLVNNAGIAVNKSVEETTT 103 (251)
T ss_dssp SSCCEEEECCCCCCCCCTTTCCH
T ss_pred CCceEEEeccccccccchhcccc
Confidence 68999999987766555444443
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=91.55 E-value=0.41 Score=40.39 Aligned_cols=89 Identities=20% Similarity=0.150 Sum_probs=57.9
Q ss_pred CCCeEEEEcCCccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHH-HHcCCCCcEEEEEcccccccc---------cC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNA-QRYGLQDIIEIRQGSWFGKLK---------DV 263 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~-~p~~~V~gvDis~~al~~Ar~N~-~~~gl~~rv~~~~gD~~~~l~---------~~ 263 (324)
+++++|=-|.++ .|+.++|+.+ ..+++|+.+|.+++.++.+.+.+ +..+ .++.++..|+.+.-. ..
T Consensus 4 ~gK~~lITGas~-GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~ 80 (251)
T d1vl8a_ 4 RGRVALVTGGSR-GLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYG--VETMAFRCDVSNYEEVKKLLEAVKEK 80 (251)
T ss_dssp TTCEEEEETTTS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHC--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCC-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 466777777654 4565555544 13589999999998887666655 4444 358899999875311 11
Q ss_pred CCCeeEEEEcCCCCCCCCcccch
Q 020573 264 EGKLSGVVSNPPYIPSDDISGLQ 286 (324)
Q Consensus 264 ~~~fDlIVsNPPYi~~~~~~~l~ 286 (324)
.++.|++|.|--+.....+..++
T Consensus 81 ~g~iDiLVnnAG~~~~~~~~~~~ 103 (251)
T d1vl8a_ 81 FGKLDTVVNAAGINRRHPAEEFP 103 (251)
T ss_dssp HSCCCEEEECCCCCCCCCGGGCC
T ss_pred cCCCCEEEECCCCCCCCChhhCC
Confidence 26899999997655444443333
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=91.45 E-value=0.5 Score=40.06 Aligned_cols=89 Identities=19% Similarity=0.121 Sum_probs=58.1
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHhC-CCcEEEEEeCC-HHHHHHHHHHHHHcCCCCcEEEEEcccccccc---------c
Q 020573 194 LRDGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLN-PLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------D 262 (324)
Q Consensus 194 ~~~~~VLDLGcGsG~iai~la~~~~-p~~~V~gvDis-~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~---------~ 262 (324)
.+++++|=-|++ +.|+.++|+.+. .+++|+.+|.+ ++.++.+.+.++..+. ++.+++.|..+.-. .
T Consensus 16 L~gK~~lITGas-~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~g~--~~~~~~~D~~~~~~v~~~~~~~~~ 92 (272)
T d1g0oa_ 16 LEGKVALVTGAG-RGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNGS--DAACVKANVGVVEDIVRMFEEAVK 92 (272)
T ss_dssp CTTCEEEETTTT-SHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCC-CHHHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHHhhCC--ceeeEeCCCCCHHHHHHHHHHHHH
Confidence 346667766665 455555555441 35789999987 5666766666777664 48999999876311 1
Q ss_pred CCCCeeEEEEcCCCCCCCCcccc
Q 020573 263 VEGKLSGVVSNPPYIPSDDISGL 285 (324)
Q Consensus 263 ~~~~fDlIVsNPPYi~~~~~~~l 285 (324)
..++.|++|.|..+.....+...
T Consensus 93 ~~g~idilV~nag~~~~~~~~~~ 115 (272)
T d1g0oa_ 93 IFGKLDIVCSNSGVVSFGHVKDV 115 (272)
T ss_dssp HHSCCCEEEECCCCCCCCCGGGC
T ss_pred HhCCCCccccccccchhhhhhhh
Confidence 13689999999877665544433
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=91.39 E-value=0.57 Score=39.41 Aligned_cols=82 Identities=15% Similarity=0.090 Sum_probs=57.5
Q ss_pred EEEEcCCccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc---------cCCCCee
Q 020573 199 WVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVEGKLS 268 (324)
Q Consensus 199 VLDLGcGsG~iai~la~~~~-p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~---------~~~~~fD 268 (324)
+|=-| |++.|+.++|+.+. .+++|+.+|.+++.++.+.+.++..+. ++.+++.|+.+.-. ...++.|
T Consensus 5 alITG-as~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~g~--~~~~~~~Dvs~~~~v~~~~~~~~~~~g~iD 81 (257)
T d2rhca1 5 ALVTG-ATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAGV--EADGRTCDVRSVPEIEALVAAVVERYGPVD 81 (257)
T ss_dssp EEEES-CSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHHTCSCS
T ss_pred EEEeC-CCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC--cEEEEEeecCCHHHHHHHHHHHHHHhCCCC
Confidence 34445 56666777766552 357999999999999988888887764 59999999876311 1136899
Q ss_pred EEEEcCCCCCCCCcc
Q 020573 269 GVVSNPPYIPSDDIS 283 (324)
Q Consensus 269 lIVsNPPYi~~~~~~ 283 (324)
++|.|--......+.
T Consensus 82 ilVnnAG~~~~~~~~ 96 (257)
T d2rhca1 82 VLVNNAGRPGGGATA 96 (257)
T ss_dssp EEEECCCCCCCSCGG
T ss_pred EEEecccccCCCChH
Confidence 999996654444333
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=91.25 E-value=0.22 Score=39.09 Aligned_cols=44 Identities=16% Similarity=0.162 Sum_probs=36.8
Q ss_pred CCCCCeEEEEcCC-ccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 020573 193 GLRDGFWVDLGTG-SGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF 238 (324)
Q Consensus 193 ~~~~~~VLDLGcG-sG~iai~la~~~~p~~~V~gvDis~~al~~Ar~ 238 (324)
..++.+|+-+||| .|.+++.+++.. +++|+++|.+++-++.|++
T Consensus 24 ~~~g~~vlV~G~G~vG~~~~~~ak~~--Ga~vi~v~~~~~r~~~a~~ 68 (170)
T d1e3ja2 24 VQLGTTVLVIGAGPIGLVSVLAAKAY--GAFVVCTARSPRRLEVAKN 68 (170)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred CCCCCEEEEEcccccchhhHhhHhhh--cccccccchHHHHHHHHHH
Confidence 4467789999998 677888888875 4799999999999988876
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=91.08 E-value=0.58 Score=39.36 Aligned_cols=84 Identities=19% Similarity=0.135 Sum_probs=58.3
Q ss_pred EEEcCCccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc---------cCCCCeeE
Q 020573 200 VDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVEGKLSG 269 (324)
Q Consensus 200 LDLGcGsG~iai~la~~~-~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~---------~~~~~fDl 269 (324)
|=-| |++.|+.++|+.+ ..+++|+.+|.+++.++.+.+.++..+. ++.+++.|..+.-. ...++.|+
T Consensus 5 lITG-as~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~g~--~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDi 81 (255)
T d1gega_ 5 LVTG-AGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAGG--HAVAVKVDVSDRDQVFAAVEQARKTLGGFDV 81 (255)
T ss_dssp EEET-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTSHHHHHHHHHHHHHHTTCCCE
T ss_pred EEcC-CccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC--cEEEEEeeCCCHHHHHHHHHHHHHHhCCccE
Confidence 4445 4566666666654 2357999999999999988888887763 58999999876311 11378999
Q ss_pred EEEcCCCCCCCCcccch
Q 020573 270 VVSNPPYIPSDDISGLQ 286 (324)
Q Consensus 270 IVsNPPYi~~~~~~~l~ 286 (324)
+|.|--+.+...+..++
T Consensus 82 lVnnAG~~~~~~~~~~~ 98 (255)
T d1gega_ 82 IVNNAGVAPSTPIESIT 98 (255)
T ss_dssp EEECCCCCCCBCGGGCC
T ss_pred EEecccccccCcHHHhh
Confidence 99997665544444333
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=90.81 E-value=0.4 Score=40.60 Aligned_cols=80 Identities=15% Similarity=0.150 Sum_probs=55.2
Q ss_pred CCCeEEEEcCCccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc---------cCC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVE 264 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~-~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~---------~~~ 264 (324)
+++.+|=-|.++| |+.++|+.+ ..+++|+.+|.+++.++.+.+.+...+...++..++.|+.+.-. ...
T Consensus 3 ~gK~alITGas~G-IG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~ 81 (258)
T d1iy8a_ 3 TDRVVLITGGGSG-LGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERF 81 (258)
T ss_dssp TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHHHh
Confidence 3556666675554 554444443 13579999999999998887777666555579999999876311 112
Q ss_pred CCeeEEEEcCC
Q 020573 265 GKLSGVVSNPP 275 (324)
Q Consensus 265 ~~fDlIVsNPP 275 (324)
++.|++|.|=-
T Consensus 82 G~iDiLVnnAG 92 (258)
T d1iy8a_ 82 GRIDGFFNNAG 92 (258)
T ss_dssp SCCSEEEECCC
T ss_pred CCCCEEEECCc
Confidence 68999999854
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=90.34 E-value=0.25 Score=39.33 Aligned_cols=45 Identities=27% Similarity=0.313 Sum_probs=36.9
Q ss_pred CCCCCeEEEEcCC-ccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 020573 193 GLRDGFWVDLGTG-SGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF 238 (324)
Q Consensus 193 ~~~~~~VLDLGcG-sG~iai~la~~~~p~~~V~gvDis~~al~~Ar~ 238 (324)
..++.+||-+|+| .|.+++.+|+.++ ..+|+++|.+++.++.|++
T Consensus 26 ~~~G~~VlV~GaG~iG~~~~~~ak~~G-a~~Vi~~~~~~~~~~~a~~ 71 (182)
T d1vj0a2 26 SFAGKTVVIQGAGPLGLFGVVIARSLG-AENVIVIAGSPNRLKLAEE 71 (182)
T ss_dssp CCBTCEEEEECCSHHHHHHHHHHHHTT-BSEEEEEESCHHHHHHHHH
T ss_pred CCCCCEEEEECCCccchhheecccccc-ccccccccccccccccccc
Confidence 3467899999998 4788889999863 2389999999999998875
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=90.23 E-value=0.33 Score=41.30 Aligned_cols=79 Identities=16% Similarity=0.165 Sum_probs=54.5
Q ss_pred CCCeEEEEcCCccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc---------cCC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVE 264 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~-~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~---------~~~ 264 (324)
+++.+|=-|.++| |+.++|+.+ ..+++|+.+|.+++.++.+.+.+.. .+++.++..|+.+.-. ...
T Consensus 5 ~gKvalITGas~G-IG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (268)
T d2bgka1 5 QDKVAIITGGAGG-IGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGS---PDVISFVHCDVTKDEDVRNLVDTTIAKH 80 (268)
T ss_dssp TTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCC---TTTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcC---CCceEEEEccCCCHHHHHHHHHHHHHHc
Confidence 4667787775554 666666654 2357999999999888766665532 3468889999875311 113
Q ss_pred CCeeEEEEcCCCC
Q 020573 265 GKLSGVVSNPPYI 277 (324)
Q Consensus 265 ~~fDlIVsNPPYi 277 (324)
++.|++|.|--..
T Consensus 81 g~iD~lVnnAG~~ 93 (268)
T d2bgka1 81 GKLDIMFGNVGVL 93 (268)
T ss_dssp SCCCEEEECCCCC
T ss_pred CCcceeccccccc
Confidence 6899999997544
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=90.20 E-value=0.63 Score=39.35 Aligned_cols=86 Identities=16% Similarity=0.033 Sum_probs=56.5
Q ss_pred CCCeEEEEcCCccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccc----------ccC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKL----------KDV 263 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~-~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l----------~~~ 263 (324)
+++++|=-|.+ +.|+.++|+.+ ..+++|+.+|.+++.++.+.+.+...+. ++..+..|..+.- ...
T Consensus 7 kgK~alVTGas-~GIG~aiA~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~~~--~~~~~~~Dv~~~~~v~~~~~~~~~~~ 83 (259)
T d1xq1a_ 7 KAKTVLVTGGT-KGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKGF--QVTGSVCDASLRPEREKLMQTVSSMF 83 (259)
T ss_dssp TTCEEEETTTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC--ceEEEeccCCCHHHHHHHHHHHHHHh
Confidence 46677766655 55555555543 2357999999999999888888777653 5999999986531 111
Q ss_pred CCCeeEEEEcCCCCCCCCcc
Q 020573 264 EGKLSGVVSNPPYIPSDDIS 283 (324)
Q Consensus 264 ~~~fDlIVsNPPYi~~~~~~ 283 (324)
.++.|++|.|-.+.....+.
T Consensus 84 ~g~idilvnnAG~~~~~~~~ 103 (259)
T d1xq1a_ 84 GGKLDILINNLGAIRSKPTL 103 (259)
T ss_dssp TTCCSEEEEECCC------C
T ss_pred CCCcccccccccccCCCchh
Confidence 36899999998766544433
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=89.79 E-value=0.45 Score=40.18 Aligned_cols=88 Identities=13% Similarity=0.142 Sum_probs=57.9
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHH-HHcCCCCcEEEEEcccccccc---------c
Q 020573 194 LRDGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNA-QRYGLQDIIEIRQGSWFGKLK---------D 262 (324)
Q Consensus 194 ~~~~~VLDLGcGsG~iai~la~~~-~p~~~V~gvDis~~al~~Ar~N~-~~~gl~~rv~~~~gD~~~~l~---------~ 262 (324)
.+++++|=-| |++.|+.++|+.+ ..+++|+.+|.+++.++.+.+.+ +..+ .++.+++.|+.+.-. .
T Consensus 7 l~gK~alITG-as~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~ 83 (260)
T d1h5qa_ 7 FVNKTIIVTG-GNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEFG--VKTKAYQCDVSNTDIVTKTIQQIDA 83 (260)
T ss_dssp CTTEEEEEET-TTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHHHT--CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEeC-CCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhC--CceEEEEccCCCHHHHHHHHHHHHH
Confidence 3466777777 5566776666654 23579999999987665555444 4445 358999999876311 1
Q ss_pred CCCCeeEEEEcCCCCCCCCccc
Q 020573 263 VEGKLSGVVSNPPYIPSDDISG 284 (324)
Q Consensus 263 ~~~~fDlIVsNPPYi~~~~~~~ 284 (324)
..++.|++|.|........+..
T Consensus 84 ~~g~iDilVnnAg~~~~~~~~~ 105 (260)
T d1h5qa_ 84 DLGPISGLIANAGVSVVKPATE 105 (260)
T ss_dssp HSCSEEEEEECCCCCCCSCGGG
T ss_pred HhCCCcEecccccccccCCHHH
Confidence 1368999999987655444433
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=89.79 E-value=0.23 Score=38.67 Aligned_cols=44 Identities=20% Similarity=0.289 Sum_probs=33.6
Q ss_pred CCCCCeEEEEcCCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 020573 193 GLRDGFWVDLGTGS-GAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF 238 (324)
Q Consensus 193 ~~~~~~VLDLGcGs-G~iai~la~~~~p~~~V~gvDis~~al~~Ar~ 238 (324)
..++.+||=.|+|+ |.+++.+++.. +.+|+++|.+++-++.+++
T Consensus 25 ~~~g~~vlv~G~G~iG~~a~~~a~~~--g~~v~~~~~~~~r~~~~k~ 69 (168)
T d1rjwa2 25 AKPGEWVAIYGIGGLGHVAVQYAKAM--GLNVVAVDIGDEKLELAKE 69 (168)
T ss_dssp CCTTCEEEEECCSTTHHHHHHHHHHT--TCEEEEECSCHHHHHHHHH
T ss_pred CCCCCEEEEeecccchhhhhHHHhcC--CCeEeccCCCHHHhhhhhh
Confidence 34577888899885 55666677764 5689999999998887765
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.62 E-value=1.5 Score=36.65 Aligned_cols=88 Identities=17% Similarity=0.147 Sum_probs=60.2
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc---------cC
Q 020573 194 LRDGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DV 263 (324)
Q Consensus 194 ~~~~~VLDLGcGsG~iai~la~~~-~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~---------~~ 263 (324)
..++.+|=-|+++| |+..+|+++ ..+++|+.+|.+++.++...+.++..+ .++..+..|..+.-. ..
T Consensus 5 l~Gkv~lITGas~G-IG~~ia~~la~~G~~V~l~~r~~~~l~~~~~~~~~~~--~~~~~~~~Dvs~~~~v~~~~~~i~~~ 81 (244)
T d1yb1a_ 5 VTGEIVLITGAGHG-IGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLG--AKVHTFVVDCSNREDIYSSAKKVKAE 81 (244)
T ss_dssp CTTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHHH
Confidence 45656666565555 444444433 135799999999999998888888765 359999999876411 12
Q ss_pred CCCeeEEEEcCCCCCCCCccc
Q 020573 264 EGKLSGVVSNPPYIPSDDISG 284 (324)
Q Consensus 264 ~~~fDlIVsNPPYi~~~~~~~ 284 (324)
.+..|++|.|--.........
T Consensus 82 ~g~idilinnag~~~~~~~~~ 102 (244)
T d1yb1a_ 82 IGDVSILVNNAGVVYTSDLFA 102 (244)
T ss_dssp TCCCSEEEECCCCCCCCCCGG
T ss_pred cCCCceeEeeccccccccccc
Confidence 468999999977665544433
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=89.42 E-value=1.1 Score=34.62 Aligned_cols=41 Identities=32% Similarity=0.383 Sum_probs=27.5
Q ss_pred eEEEEcCCc--cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHH
Q 020573 198 FWVDLGTGS--GAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFN 239 (324)
Q Consensus 198 ~VLDLGcGs--G~iai~la~~~~p~~~V~gvDis~~al~~Ar~N 239 (324)
+|+=+|||. |.++..+.+. +...+|+|+|.+++.++.|+++
T Consensus 3 ~I~IIG~G~mG~sla~~L~~~-g~~~~I~~~D~~~~~~~~a~~~ 45 (171)
T d2g5ca2 3 NVLIVGVGFMGGSFAKSLRRS-GFKGKIYGYDINPESISKAVDL 45 (171)
T ss_dssp EEEEESCSHHHHHHHHHHHHT-TCCSEEEEECSCHHHHHHHHHT
T ss_pred EEEEEccCHHHHHHHHHHHhc-CCCeEEEEEECChHHHHHHHHh
Confidence 467788763 2233344333 3456899999999999887754
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=89.26 E-value=0.88 Score=38.31 Aligned_cols=80 Identities=20% Similarity=0.168 Sum_probs=56.3
Q ss_pred CCCeEEEEcCCccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc---------cCC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVE 264 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~-~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~---------~~~ 264 (324)
+++.+|=-|.+ +.|+.++|+.+ ..+++|+.+|.+++.++.+.+.++..+. ++..+..|+.+.-. ...
T Consensus 4 ~gK~alITGas-~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g~--~~~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (260)
T d1zema1 4 NGKVCLVTGAG-GNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKGV--EARSYVCDVTSEEAVIGTVDSVVRDF 80 (260)
T ss_dssp TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTS--CEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC--cEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 46677766654 55555555543 1357999999999999988888876653 58999999875311 113
Q ss_pred CCeeEEEEcCCCC
Q 020573 265 GKLSGVVSNPPYI 277 (324)
Q Consensus 265 ~~fDlIVsNPPYi 277 (324)
++.|++|.|--+.
T Consensus 81 g~iDilVnnaG~~ 93 (260)
T d1zema1 81 GKIDFLFNNAGYQ 93 (260)
T ss_dssp SCCCEEEECCCCC
T ss_pred CCCCeehhhhccc
Confidence 6899999997654
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.21 E-value=0.47 Score=40.27 Aligned_cols=80 Identities=19% Similarity=0.108 Sum_probs=59.6
Q ss_pred CCeEEEEcCCccHHHHHHHHHhC--CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccc---------ccCC
Q 020573 196 DGFWVDLGTGSGAIAIGIARVLG--SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKL---------KDVE 264 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~~--p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l---------~~~~ 264 (324)
+++|.=+--|++.|+.++|+.+. .+.+|+.++.+++.++.+.+.++..+. ++.+++.|+.+.- ....
T Consensus 2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~--~~~~~~~Dvs~~~sv~~~~~~~~~~~ 79 (275)
T d1wmaa1 2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGL--SPRFHQLDIDDLQSIRALRDFLRKEY 79 (275)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTC--CCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCC--cEEEEEEecCCHHHHHHHHHHHHHhc
Confidence 56776676677788887777652 357999999999999999888887764 4889999986531 1113
Q ss_pred CCeeEEEEcCCCC
Q 020573 265 GKLSGVVSNPPYI 277 (324)
Q Consensus 265 ~~fDlIVsNPPYi 277 (324)
++.|++|.|--+.
T Consensus 80 g~iDiLVnNAGi~ 92 (275)
T d1wmaa1 80 GGLDVLVNNAGIA 92 (275)
T ss_dssp SSEEEEEECCCCC
T ss_pred CCcEEEEEcCCcC
Confidence 6899999996543
|
| >d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sepiapterin reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.14 E-value=2.7 Score=34.88 Aligned_cols=79 Identities=6% Similarity=-0.095 Sum_probs=55.9
Q ss_pred CeEEEEcCCccHHHHHHHHHh----CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccc---------cc-
Q 020573 197 GFWVDLGTGSGAIAIGIARVL----GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKL---------KD- 262 (324)
Q Consensus 197 ~~VLDLGcGsG~iai~la~~~----~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l---------~~- 262 (324)
++|.=+--|++.|+.++|+.+ ..+++|+.++.+++.++.+.+.+...+...++.++.+|+.+.- ..
T Consensus 6 gKvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dvs~~~~v~~l~~~~~~~ 85 (259)
T d1oaaa_ 6 CAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGTEAGVQRLLSAVREL 85 (259)
T ss_dssp SEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTSHHHHHHHHHHHHHS
T ss_pred CCEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHHHHHh
Confidence 356666556667788887765 2457999999999999888887776655557999999987531 01
Q ss_pred ---CCCCeeEEEEcCC
Q 020573 263 ---VEGKLSGVVSNPP 275 (324)
Q Consensus 263 ---~~~~fDlIVsNPP 275 (324)
.....|++|.|--
T Consensus 86 ~~~~~~~~~~lvnnag 101 (259)
T d1oaaa_ 86 PRPEGLQRLLLINNAA 101 (259)
T ss_dssp CCCTTCCEEEEEECCC
T ss_pred hhhccCceEEEEeccc
Confidence 1235788888843
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=89.05 E-value=1.5 Score=36.87 Aligned_cols=88 Identities=16% Similarity=0.100 Sum_probs=60.8
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccc----------ccC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKL----------KDV 263 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~-p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l----------~~~ 263 (324)
+++++|=-|.+ +.|+.++|+.+. .+++|+.+|.+++.++.+.+.+...+ .++.++..|..+.- ...
T Consensus 7 ~GK~alITGas-~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 83 (259)
T d2ae2a_ 7 EGCTALVTGGS-RGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKG--FKVEASVCDLSSRSERQELMNTVANHF 83 (259)
T ss_dssp TTCEEEEESCS-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CCceEEEeeCCCHHHHHHHHHHHHHHh
Confidence 46677766655 556666665541 35799999999999988888877765 35888999986531 112
Q ss_pred CCCeeEEEEcCCCCCCCCcccc
Q 020573 264 EGKLSGVVSNPPYIPSDDISGL 285 (324)
Q Consensus 264 ~~~fDlIVsNPPYi~~~~~~~l 285 (324)
.++.|++|.|.-+.....+..+
T Consensus 84 ~~~idilvnnAG~~~~~~~~~~ 105 (259)
T d2ae2a_ 84 HGKLNILVNNAGIVIYKEAKDY 105 (259)
T ss_dssp TTCCCEEEECCCCCCCCCGGGC
T ss_pred CCCceEEEECCceeccCccccC
Confidence 3479999999877655544433
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=88.92 E-value=0.64 Score=39.12 Aligned_cols=85 Identities=15% Similarity=0.171 Sum_probs=55.2
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc---------cCC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVE 264 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~-p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~---------~~~ 264 (324)
+++++|=-| |++.|+.++|+.+. .+++|+.+|.+++.++.+.+.+ + .+..+++.|..+.-. ...
T Consensus 5 ~gK~alITG-as~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~---~--~~~~~~~~Dv~~~~~~~~~~~~~~~~~ 78 (253)
T d1hxha_ 5 QGKVALVTG-GASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAEL---G--ERSMFVRHDVSSEADWTLVMAAVQRRL 78 (253)
T ss_dssp TTCEEEETT-TTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHH---C--TTEEEECCCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeC-CCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh---C--CCeEEEEeecCCHHHHHHHHHHHHHHh
Confidence 456677666 45556666666542 3579999999998877655443 2 458888888865311 113
Q ss_pred CCeeEEEEcCCCCCCCCcccc
Q 020573 265 GKLSGVVSNPPYIPSDDISGL 285 (324)
Q Consensus 265 ~~fDlIVsNPPYi~~~~~~~l 285 (324)
++.|++|.|--......+..+
T Consensus 79 g~iDilVnnAG~~~~~~~~~~ 99 (253)
T d1hxha_ 79 GTLNVLVNNAGILLPGDMETG 99 (253)
T ss_dssp CSCCEEEECCCCCCCBCTTTC
T ss_pred CCCCeEEecccccCCCCcccC
Confidence 689999999876554444333
|
| >d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: FkbM-like domain: Methyltransferase FkbM species: Methylobacillus flagellatus [TaxId: 405]
Probab=88.38 E-value=0.69 Score=41.90 Aligned_cols=59 Identities=15% Similarity=0.164 Sum_probs=46.8
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCC---cEEEEE
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQD---IIEIRQ 253 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~-p~~~V~gvDis~~al~~Ar~N~~~~gl~~---rv~~~~ 253 (324)
+...++|+|+=.|..+..+++... ...+|+++|-++...+..++|++.+...+ ++.++.
T Consensus 212 kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~~n~~~n~~~~I~~~~ 274 (395)
T d2py6a1 212 DSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHG 274 (395)
T ss_dssp SSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEEC
T ss_pred CCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHHhcccccccceEEEEE
Confidence 456899999999999988877652 23699999999999999999999876543 355443
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.26 E-value=0.22 Score=39.42 Aligned_cols=75 Identities=17% Similarity=0.172 Sum_probs=47.4
Q ss_pred CCCCCeEEEEcC--CccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccccc--CCCCee
Q 020573 193 GLRDGFWVDLGT--GSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKD--VEGKLS 268 (324)
Q Consensus 193 ~~~~~~VLDLGc--GsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~--~~~~fD 268 (324)
..++.+||-.|+ |.|..++.+|+.. +++|++++.+++..+.+++ .|...-+.....|+.+.+.. ....+|
T Consensus 26 ~~~g~~VlV~Ga~G~vG~~aiq~a~~~--G~~vi~~~~~~~~~~~~~~----~Ga~~vi~~~~~~~~~~i~~~t~~~g~d 99 (174)
T d1yb5a2 26 VKAGESVLVHGASGGVGLAACQIARAY--GLKILGTAGTEEGQKIVLQ----NGAHEVFNHREVNYIDKIKKYVGEKGID 99 (174)
T ss_dssp CCTTCEEEEETCSSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH----TTCSEEEETTSTTHHHHHHHHHCTTCEE
T ss_pred CCCCCEEEEEecccccccccccccccc--Ccccccccccccccccccc----cCcccccccccccHHHHhhhhhccCCce
Confidence 346779999996 4778889999985 5899999999887777653 56532111112233222211 124688
Q ss_pred EEEEc
Q 020573 269 GVVSN 273 (324)
Q Consensus 269 lIVsN 273 (324)
+|+.+
T Consensus 100 ~v~d~ 104 (174)
T d1yb5a2 100 IIIEM 104 (174)
T ss_dssp EEEES
T ss_pred EEeec
Confidence 88763
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=88.15 E-value=0.33 Score=38.74 Aligned_cols=47 Identities=23% Similarity=0.130 Sum_probs=37.9
Q ss_pred CCCCCCeEEEEcCC-ccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHH
Q 020573 192 DGLRDGFWVDLGTG-SGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFN 239 (324)
Q Consensus 192 ~~~~~~~VLDLGcG-sG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N 239 (324)
...++..|+=.|+| .|..++.+++.+ ...+|+++|.+++-++.|++.
T Consensus 26 ~~~~g~tVlI~G~GgvGl~ai~~ak~~-G~~~Vi~vd~~~~kl~~Ak~~ 73 (176)
T d1d1ta2 26 KVKPGSTCVVFGLGGVGLSVIMGCKSA-GASRIIGIDLNKDKFEKAMAV 73 (176)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEECSCGGGHHHHHHH
T ss_pred CCCCCCEEEEECCCchhHHHHHHHHHc-CCceEEEecCcHHHHHHHHhc
Confidence 34567789999998 566778888875 447999999999999998865
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=87.69 E-value=0.68 Score=38.67 Aligned_cols=78 Identities=17% Similarity=0.104 Sum_probs=51.7
Q ss_pred CCCeEEEEcCCccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc---------cCC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVE 264 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~-~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~---------~~~ 264 (324)
+++++|=-|.++| |+.++|+.+ ..+++|+.+|.+++.++.+.+.+ +++++..|+.+.-. ...
T Consensus 4 ~gK~~lITGas~G-IG~aia~~l~~~G~~V~~~~r~~~~l~~~~~~~-------~~~~~~~Dv~~~~~v~~~~~~~~~~~ 75 (242)
T d1ulsa_ 4 KDKAVLITGAAHG-IGRATLELFAKEGARLVACDIEEGPLREAAEAV-------GAHPVVMDVADPASVERGFAEALAHL 75 (242)
T ss_dssp TTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT-------TCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHc-------CCeEEEEecCCHHHHHHHHHHHHHhc
Confidence 3566777676655 777777655 23579999999998877665432 36788889875311 112
Q ss_pred CCeeEEEEcCCCCCCC
Q 020573 265 GKLSGVVSNPPYIPSD 280 (324)
Q Consensus 265 ~~fDlIVsNPPYi~~~ 280 (324)
++.|++|.|--.....
T Consensus 76 g~iDilVnnAG~~~~~ 91 (242)
T d1ulsa_ 76 GRLDGVVHYAGITRDN 91 (242)
T ss_dssp SSCCEEEECCCCCCCC
T ss_pred CCceEEEECCcccccC
Confidence 6899999996544433
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=87.20 E-value=1.6 Score=36.97 Aligned_cols=85 Identities=13% Similarity=0.054 Sum_probs=56.8
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHH-cCCCCcEEEEEcccccccc---------c
Q 020573 194 LRDGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQR-YGLQDIIEIRQGSWFGKLK---------D 262 (324)
Q Consensus 194 ~~~~~VLDLGcGsG~iai~la~~~-~p~~~V~gvDis~~al~~Ar~N~~~-~gl~~rv~~~~gD~~~~l~---------~ 262 (324)
.+++++|=-|+++ .|+.++|+.+ ..+++|+.+|.+.+.++.+.+.+.. .+ .++.++..|..+.-. .
T Consensus 23 l~gK~alITGas~-GIG~aiA~~la~~Ga~Vii~~r~~~~l~~~~~~l~~~~g--~~~~~~~~D~~~~~~v~~~~~~~~~ 99 (294)
T d1w6ua_ 23 FQGKVAFITGGGT-GLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTG--NKVHAIQCDVRDPDMVQNTVSELIK 99 (294)
T ss_dssp TTTCEEEEETTTS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHS--SCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCC-HHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhcC--CceEEEEecccChHHHHHHhhhhhh
Confidence 4566777777655 4666666554 1357999999999888766665543 33 358899999865311 1
Q ss_pred CCCCeeEEEEcCCCCCCCC
Q 020573 263 VEGKLSGVVSNPPYIPSDD 281 (324)
Q Consensus 263 ~~~~fDlIVsNPPYi~~~~ 281 (324)
..+..|++|.|.-+.....
T Consensus 100 ~~g~iDilvnnAg~~~~~~ 118 (294)
T d1w6ua_ 100 VAGHPNIVINNAAGNFISP 118 (294)
T ss_dssp HTCSCSEEEECCCCCCCSC
T ss_pred hccccchhhhhhhhccccc
Confidence 2468999999976654443
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=87.15 E-value=1.2 Score=37.57 Aligned_cols=82 Identities=11% Similarity=0.025 Sum_probs=57.3
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCC-CcEEEEEcccccccc---------cC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQ-DIIEIRQGSWFGKLK---------DV 263 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~-p~~~V~gvDis~~al~~Ar~N~~~~gl~-~rv~~~~gD~~~~l~---------~~ 263 (324)
+++++|=-|. ++.|+.++|+.+. .+++|+.+|.+++.++.+.+.++..+.. .++.++..|+.+.-. ..
T Consensus 4 ~gK~alVTGa-s~GIG~aia~~la~~Ga~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 82 (272)
T d1xkqa_ 4 SNKTVIITGS-SNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLKQ 82 (272)
T ss_dssp TTCEEEETTC-SSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCc-CcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 4556666664 5566666665541 3579999999999999988888777643 368999999876311 11
Q ss_pred CCCeeEEEEcCCCC
Q 020573 264 EGKLSGVVSNPPYI 277 (324)
Q Consensus 264 ~~~fDlIVsNPPYi 277 (324)
.++.|++|.|--..
T Consensus 83 ~g~iDilvnnAG~~ 96 (272)
T d1xkqa_ 83 FGKIDVLVNNAGAA 96 (272)
T ss_dssp HSCCCEEEECCCCC
T ss_pred hCCceEEEeCCccc
Confidence 26899999995443
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=86.98 E-value=1.2 Score=37.30 Aligned_cols=86 Identities=16% Similarity=0.090 Sum_probs=55.7
Q ss_pred CCCeEEEEcCCccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc---------cCC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVE 264 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~-~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~---------~~~ 264 (324)
+++++|=-|. ++.|+.++|+.+ ..+++|+.+|.+++.++.+.+. .+ .++.++..|+.+.-. ...
T Consensus 4 ~gK~alVTGa-s~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~---~~--~~~~~~~~Dvt~~~~v~~~~~~~~~~~ 77 (256)
T d1k2wa_ 4 DGKTALITGS-ARGIGRAFAEAYVREGARVAIADINLEAARATAAE---IG--PAACAIALDVTDQASIDRCVAELLDRW 77 (256)
T ss_dssp TTEEEEEETC-SSHHHHHHHHHHHHTTEEEEEEESCHHHHHHHHHH---HC--TTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCC-CCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH---hC--CceEEEEeeCCCHHHHHHHHHHHHHHh
Confidence 3556676665 455666666544 1357999999998877655443 33 358899999876311 112
Q ss_pred CCeeEEEEcCCCCCCCCcccch
Q 020573 265 GKLSGVVSNPPYIPSDDISGLQ 286 (324)
Q Consensus 265 ~~fDlIVsNPPYi~~~~~~~l~ 286 (324)
++.|++|.|.-+.....+..+.
T Consensus 78 g~iDilVnnAg~~~~~~~~~~~ 99 (256)
T d1k2wa_ 78 GSIDILVNNAALFDLAPIVEIT 99 (256)
T ss_dssp SCCCEEEECCCCCCCCCGGGCC
T ss_pred CCccEEEeecccccccccccCC
Confidence 6899999998776555444333
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=86.74 E-value=0.94 Score=38.12 Aligned_cols=79 Identities=13% Similarity=0.046 Sum_probs=55.9
Q ss_pred CCeEEEEcCCccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCC-CcEEEEEcccccccc---------cCC
Q 020573 196 DGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQ-DIIEIRQGSWFGKLK---------DVE 264 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~-~p~~~V~gvDis~~al~~Ar~N~~~~gl~-~rv~~~~gD~~~~l~---------~~~ 264 (324)
++.+|=-| |++.|+.++|+++ ..+++|+.+|.+++.++.+.+.+...+.. .++.++..|..+.-. ...
T Consensus 5 gKvalVTG-as~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~ 83 (264)
T d1spxa_ 5 EKVAIITG-SSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLGKF 83 (264)
T ss_dssp TCEEEETT-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCEEEEeC-cCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHHHHHh
Confidence 44455444 5566777776655 23579999999999999888888877643 469999999875311 113
Q ss_pred CCeeEEEEcCC
Q 020573 265 GKLSGVVSNPP 275 (324)
Q Consensus 265 ~~fDlIVsNPP 275 (324)
++.|++|.|--
T Consensus 84 g~iDilvnnAG 94 (264)
T d1spxa_ 84 GKLDILVNNAG 94 (264)
T ss_dssp SCCCEEEECCC
T ss_pred CCCCEeecccc
Confidence 68999999853
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=86.66 E-value=0.49 Score=37.65 Aligned_cols=46 Identities=24% Similarity=0.189 Sum_probs=37.9
Q ss_pred CCCCCCeEEEEcCCc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 020573 192 DGLRDGFWVDLGTGS-GAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF 238 (324)
Q Consensus 192 ~~~~~~~VLDLGcGs-G~iai~la~~~~p~~~V~gvDis~~al~~Ar~ 238 (324)
...++.+|+=+|||. |.+++.+++.+ ...+|+++|.+++-++.|++
T Consensus 25 ~v~~G~~VlV~G~G~iGl~a~~~ak~~-Ga~~Vi~~d~~~~r~~~a~~ 71 (174)
T d1e3ia2 25 KVTPGSTCAVFGLGCVGLSAIIGCKIA-GASRIIAIDINGEKFPKAKA 71 (174)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEECSCGGGHHHHHH
T ss_pred CCCCCCEEEEECCChHHHHHHHHHHHh-CCceeeeeccchHHHHHHHH
Confidence 345678999999996 88999999987 44689999999988877765
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=86.61 E-value=1 Score=37.60 Aligned_cols=86 Identities=13% Similarity=0.079 Sum_probs=56.8
Q ss_pred CCCeEEEEcCCccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc---------cCC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVE 264 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~-~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~---------~~~ 264 (324)
+++++|=-|+++| |+.++|+.+ ..+++|+.+|.+++.++.+.+.+ .+++.+++.|..+.-. ...
T Consensus 5 ~gK~alITGas~G-IG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 78 (244)
T d1nffa_ 5 TGKVALVSGGARG-MGASHVRAMVAEGAKVVFGDILDEEGKAMAAEL-----ADAARYVHLDVTQPAQWKAAVDTAVTAF 78 (244)
T ss_dssp TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHT-----GGGEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh-----hCcceEEEeecCCHHHHHHHHHHHHHHh
Confidence 4667777776655 565555544 13579999999998876655443 2468899999876311 112
Q ss_pred CCeeEEEEcCCCCCCCCcccch
Q 020573 265 GKLSGVVSNPPYIPSDDISGLQ 286 (324)
Q Consensus 265 ~~fDlIVsNPPYi~~~~~~~l~ 286 (324)
++.|++|.|-.+.....+..+.
T Consensus 79 g~idilinnAG~~~~~~~~~~~ 100 (244)
T d1nffa_ 79 GGLHVLVNNAGILNIGTIEDYA 100 (244)
T ss_dssp SCCCEEEECCCCCCCBCTTTSC
T ss_pred CCCeEEEECCcccCCCchhhCC
Confidence 6799999998776555444433
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=85.80 E-value=2.6 Score=35.10 Aligned_cols=81 Identities=17% Similarity=0.070 Sum_probs=58.8
Q ss_pred CCCeEEEEcCCccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc---------cCC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVE 264 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~-~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~---------~~~ 264 (324)
+++++| +--|++.|+.++|+.+ ..+++|+.+|.+++.++.+.+.++..+. ++.+++.|..+.-. ...
T Consensus 10 ~gK~al-ITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l~~~g~--~~~~~~~Dvs~~~~~~~~~~~~~~~~ 86 (255)
T d1fmca_ 10 DGKCAI-ITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGG--QAFACRCDITSEQELSALADFAISKL 86 (255)
T ss_dssp TTCEEE-ETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEE-EeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCC--cEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 455565 4446677787777765 2357999999999999988888887763 58899999876311 112
Q ss_pred CCeeEEEEcCCCCC
Q 020573 265 GKLSGVVSNPPYIP 278 (324)
Q Consensus 265 ~~fDlIVsNPPYi~ 278 (324)
++.|++|.|.-+..
T Consensus 87 g~iDilvnnAG~~~ 100 (255)
T d1fmca_ 87 GKVDILVNNAGGGG 100 (255)
T ss_dssp SSCCEEEECCCCCC
T ss_pred CCCCEeeeCCcCCC
Confidence 68999999976543
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=85.57 E-value=2.1 Score=32.85 Aligned_cols=44 Identities=20% Similarity=0.256 Sum_probs=35.1
Q ss_pred CCCCCeEEEEcCC-ccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 020573 193 GLRDGFWVDLGTG-SGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF 238 (324)
Q Consensus 193 ~~~~~~VLDLGcG-sG~iai~la~~~~p~~~V~gvDis~~al~~Ar~ 238 (324)
..++.+|+=+|+| .|.+++.+++.. +.+|+++|.+++-++.+++
T Consensus 25 ~~~g~~VlV~GaG~vG~~~~~~ak~~--G~~Vi~~~~~~~~~~~a~~ 69 (166)
T d1llua2 25 ARPGQWVAISGIGGLGHVAVQYARAM--GLHVAAIDIDDAKLELARK 69 (166)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred CCCCCEEEEeeccccHHHHHHHHHHc--CCccceecchhhHHHhhhc
Confidence 3456788889988 567778888875 4799999999999888764
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.51 E-value=2.5 Score=35.01 Aligned_cols=83 Identities=17% Similarity=0.075 Sum_probs=54.1
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccc------cccCCCC
Q 020573 194 LRDGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGK------LKDVEGK 266 (324)
Q Consensus 194 ~~~~~VLDLGcGsG~iai~la~~~-~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~------l~~~~~~ 266 (324)
..++++|=-|.++ .|+.++|+.+ ..+++|+.+|.+++.++.+.+. . . .+..++.|..+. +.. -++
T Consensus 5 L~GK~~lITGas~-GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~---~--~-~~~~~~~Dv~d~~~v~~~~~~-~g~ 76 (244)
T d1pr9a_ 5 LAGRRVLVTGAGK-GIGRGTVQALHATGARVVAVSRTQADLDSLVRE---C--P-GIEPVCVDLGDWEATERALGS-VGP 76 (244)
T ss_dssp CTTCEEEEESTTS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH---S--T-TCEEEECCTTCHHHHHHHHTT-CCC
T ss_pred CCCCEEEEeCCCC-HHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHh---c--C-CCeEEEEeCCCHHHHHHHHHH-hCC
Confidence 3567888878654 5555555544 1357999999999877655433 2 1 377888888653 112 368
Q ss_pred eeEEEEcCCCCCCCCccc
Q 020573 267 LSGVVSNPPYIPSDDISG 284 (324)
Q Consensus 267 fDlIVsNPPYi~~~~~~~ 284 (324)
.|++|.|-.......+..
T Consensus 77 iDilVnnAg~~~~~~~~~ 94 (244)
T d1pr9a_ 77 VDLLVNNAAVALLQPFLE 94 (244)
T ss_dssp CCEEEECCCCCCCBCGGG
T ss_pred ceEEEeccccccccchhh
Confidence 999999976655444433
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=85.43 E-value=1.1 Score=34.87 Aligned_cols=45 Identities=16% Similarity=0.152 Sum_probs=35.5
Q ss_pred CCCCCCeEEEEcCC-ccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 020573 192 DGLRDGFWVDLGTG-SGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF 238 (324)
Q Consensus 192 ~~~~~~~VLDLGcG-sG~iai~la~~~~p~~~V~gvDis~~al~~Ar~ 238 (324)
+..++.+|+=+|+| .|.+++.+|+.. +++++++|.+++-.+.+++
T Consensus 27 ~~~~G~~VlI~GaG~vG~~a~qlak~~--Ga~~i~~~~~~~~~~~a~~ 72 (168)
T d1uufa2 27 QAGPGKKVGVVGIGGLGHMGIKLAHAM--GAHVVAFTTSEAKREAAKA 72 (168)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESSGGGHHHHHH
T ss_pred CCCCCCEEEEeccchHHHHHHHHhhcc--cccchhhccchhHHHHHhc
Confidence 34567888889988 577888889885 5788899999887777664
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=85.24 E-value=1.3 Score=37.31 Aligned_cols=84 Identities=17% Similarity=0.114 Sum_probs=54.5
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc---------cC
Q 020573 194 LRDGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DV 263 (324)
Q Consensus 194 ~~~~~VLDLGcGsG~iai~la~~~~-p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~---------~~ 263 (324)
++++++|=-|.++| |+.++|+++. .+++|+.+|.+++.++...+. +.+++.+++.|..+.-. ..
T Consensus 3 L~gK~alVTGas~G-IG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~-----~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 76 (254)
T d1hdca_ 3 LSGKTVIITGGARG-LGAEAARQAVAAGARVVLADVLDEEGAATARE-----LGDAARYQHLDVTIEEDWQRVVAYAREE 76 (254)
T ss_dssp CCCSEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT-----TGGGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCcCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-----hCCceEEEEcccCCHHHHHHHHHHHHHH
Confidence 45677777776665 5555555442 357999999999876644332 23569999999875311 11
Q ss_pred CCCeeEEEEcCCCCCCCCcc
Q 020573 264 EGKLSGVVSNPPYIPSDDIS 283 (324)
Q Consensus 264 ~~~fDlIVsNPPYi~~~~~~ 283 (324)
.++.|++|.|--+.....+.
T Consensus 77 ~g~iDilVnnAg~~~~~~~~ 96 (254)
T d1hdca_ 77 FGSVDGLVNNAGISTGMFLE 96 (254)
T ss_dssp HSCCCEEEECCCCCCCSCGG
T ss_pred cCCccEEEecCccccccccc
Confidence 26899999997665444333
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.10 E-value=1 Score=35.07 Aligned_cols=46 Identities=15% Similarity=0.169 Sum_probs=35.3
Q ss_pred CCCCCeEEEEcCC-ccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHH
Q 020573 193 GLRDGFWVDLGTG-SGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFN 239 (324)
Q Consensus 193 ~~~~~~VLDLGcG-sG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N 239 (324)
..++.+|+=+|+| .|.+++.+++.. ...+|+++|.+++-++.|++.
T Consensus 24 ~~~gd~VlI~G~G~iG~~~~~~a~~~-G~~~Vi~~d~~~~rl~~a~~~ 70 (171)
T d1pl8a2 24 VTLGHKVLVCGAGPIGMVTLLVAKAM-GAAQVVVTDLSATRLSKAKEI 70 (171)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEEESCHHHHHHHHHT
T ss_pred CCCCCEEEEECCCccHHHHHHHHHHc-CCceEEeccCCHHHHHHHHHh
Confidence 3456789999998 456677777775 334899999999999887753
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=84.87 E-value=2 Score=35.85 Aligned_cols=86 Identities=22% Similarity=0.106 Sum_probs=59.2
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHhC-CCcEEEE-EeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc---------c
Q 020573 194 LRDGFWVDLGTGSGAIAIGIARVLG-SKGSIIA-VDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------D 262 (324)
Q Consensus 194 ~~~~~VLDLGcGsG~iai~la~~~~-p~~~V~g-vDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~---------~ 262 (324)
+.++++|=-| |++.|+.++|+.+. .+++|+. .+.+.+.++.+.+.++.+|. ++.++..|+.+.-. .
T Consensus 4 L~GK~alITG-as~GIG~aia~~la~~G~~Vvi~~~~~~~~~~~~~~~~~~~g~--~~~~~~~D~~~~~~v~~~~~~~~~ 80 (259)
T d1ja9a_ 4 LAGKVALTTG-AGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLGA--QGVAIQADISKPSEVVALFDKAVS 80 (259)
T ss_dssp TTTCEEEETT-TTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTC--CEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCEEEEeC-CCCHHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHHcCC--CceEecCCCCCHHHHHHHHHHHHH
Confidence 4567777555 67777777776652 2467776 46788888888888888774 58999999875311 1
Q ss_pred CCCCeeEEEEcCCCCCCCCc
Q 020573 263 VEGKLSGVVSNPPYIPSDDI 282 (324)
Q Consensus 263 ~~~~fDlIVsNPPYi~~~~~ 282 (324)
..+..|++|.|........+
T Consensus 81 ~~g~idilinnag~~~~~~~ 100 (259)
T d1ja9a_ 81 HFGGLDFVMSNSGMEVWCDE 100 (259)
T ss_dssp HHSCEEEEECCCCCCCCCCG
T ss_pred HcCCCcEEEecccccccccc
Confidence 13689999999876544443
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=84.74 E-value=2 Score=35.58 Aligned_cols=85 Identities=13% Similarity=-0.003 Sum_probs=54.7
Q ss_pred CCCeEEEEcCCccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc---------cCC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVE 264 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~-~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~---------~~~ 264 (324)
+++++|=-|. ++.|+.++|+.+ ..+++|+.+|.+++.++...+.+. .++..+..|..+.-. ...
T Consensus 3 ~gK~alITGa-s~GIG~a~a~~l~~~G~~Vv~~~r~~~~l~~~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 76 (243)
T d1q7ba_ 3 EGKIALVTGA-SRGIGRAIAETLAARGAKVIGTATSENGAQAISDYLG-----ANGKGLMLNVTDPASIESVLEKIRAEF 76 (243)
T ss_dssp TTCEEEESSC-SSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHG-----GGEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCEEEEeCC-CCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhC-----CCCcEEEEEecCHHHhhhhhhhhhccc
Confidence 4555665564 455666666554 235799999999988776655432 357888899875311 113
Q ss_pred CCeeEEEEcCCCCCCCCcccc
Q 020573 265 GKLSGVVSNPPYIPSDDISGL 285 (324)
Q Consensus 265 ~~fDlIVsNPPYi~~~~~~~l 285 (324)
++.|++|.|--+.....+..+
T Consensus 77 g~iDilVnnAg~~~~~~~~~~ 97 (243)
T d1q7ba_ 77 GEVDILVNNAGITRDNLLMRM 97 (243)
T ss_dssp CSCSEEEECCCCCCCCCGGGC
T ss_pred CCcceehhhhhhccccccccc
Confidence 689999999766555444333
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=84.70 E-value=0.28 Score=38.83 Aligned_cols=75 Identities=12% Similarity=0.105 Sum_probs=46.4
Q ss_pred CCCCCeEEEEc--CCccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccC--CCCee
Q 020573 193 GLRDGFWVDLG--TGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDV--EGKLS 268 (324)
Q Consensus 193 ~~~~~~VLDLG--cGsG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~--~~~fD 268 (324)
..++.+||=.| .|.|.+++.+|+.+ +.+|++++.+++-.+.+++ .|...-+.....|+.+.+... ...||
T Consensus 23 ~~~g~~VlI~ga~g~vG~~~iqla~~~--g~~vi~~~~~~~~~~~l~~----~Ga~~vi~~~~~~~~~~v~~~t~~~g~d 96 (183)
T d1pqwa_ 23 LSPGERVLIHSATGGVGMAAVSIAKMI--GARIYTTAGSDAKREMLSR----LGVEYVGDSRSVDFADEILELTDGYGVD 96 (183)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHHT----TCCSEEEETTCSTHHHHHHHHTTTCCEE
T ss_pred CCCCCEEEEECCCCCcccccchhhccc--cccceeeeccccccccccc----ccccccccCCccCHHHHHHHHhCCCCEE
Confidence 34567888766 45788899999986 5799999988877776653 454321111122333322211 24699
Q ss_pred EEEEc
Q 020573 269 GVVSN 273 (324)
Q Consensus 269 lIVsN 273 (324)
+|+..
T Consensus 97 ~v~d~ 101 (183)
T d1pqwa_ 97 VVLNS 101 (183)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 99973
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=84.44 E-value=0.61 Score=37.27 Aligned_cols=70 Identities=17% Similarity=0.116 Sum_probs=49.7
Q ss_pred CCCeEEEEcCC-ccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccccCCCCeeEEEE
Q 020573 195 RDGFWVDLGTG-SGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVS 272 (324)
Q Consensus 195 ~~~~VLDLGcG-sG~iai~la~~~~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~~~~~~fDlIVs 272 (324)
++.+|+=+|+| .|..++..|+.+ +++|+++|.+++.++..+.-.. .++++...+-.. +...-...|+||.
T Consensus 31 ~pa~V~ViGaGvaG~~A~~~A~~l--GA~V~~~D~~~~~l~~l~~~~~-----~~~~~~~~~~~~-l~~~~~~aDivI~ 101 (168)
T d1pjca1 31 KPGKVVILGGGVVGTEAAKMAVGL--GAQVQIFDINVERLSYLETLFG-----SRVELLYSNSAE-IETAVAEADLLIG 101 (168)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHG-----GGSEEEECCHHH-HHHHHHTCSEEEE
T ss_pred CCcEEEEECCChHHHHHHHHHhhC--CCEEEEEeCcHHHHHHHHHhhc-----ccceeehhhhhh-HHHhhccCcEEEE
Confidence 56799999999 678888999987 5899999999998876654432 235555544322 2221236899998
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.25 E-value=0.85 Score=38.23 Aligned_cols=85 Identities=16% Similarity=0.041 Sum_probs=57.7
Q ss_pred CCeEEEEcCCccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc---------cCCC
Q 020573 196 DGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVEG 265 (324)
Q Consensus 196 ~~~VLDLGcGsG~iai~la~~~-~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~---------~~~~ 265 (324)
++.+|=-|+ ++.|+.++|+.+ ..+++|+.+|.+.+.++.+...+....-..++.++..|..+.-. ...+
T Consensus 3 GKvalITGa-s~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G 81 (254)
T d2gdza1 3 GKVALVTGA-AQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHFG 81 (254)
T ss_dssp TCEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CCEEEEeCC-CCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHHcC
Confidence 456666665 455677776654 24579999999999888777666543333468999999876311 1126
Q ss_pred CeeEEEEcCCCCCCCC
Q 020573 266 KLSGVVSNPPYIPSDD 281 (324)
Q Consensus 266 ~fDlIVsNPPYi~~~~ 281 (324)
+.|++|.|--.....+
T Consensus 82 ~iDilVnnAg~~~~~~ 97 (254)
T d2gdza1 82 RLDILVNNAGVNNEKN 97 (254)
T ss_dssp CCCEEEECCCCCCSSS
T ss_pred CcCeeccccccccccc
Confidence 8999999976655443
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=83.92 E-value=0.72 Score=36.47 Aligned_cols=46 Identities=20% Similarity=0.051 Sum_probs=36.7
Q ss_pred CCCCCCeEEEEcCC-ccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 020573 192 DGLRDGFWVDLGTG-SGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF 238 (324)
Q Consensus 192 ~~~~~~~VLDLGcG-sG~iai~la~~~~p~~~V~gvDis~~al~~Ar~ 238 (324)
...++.+|+=+||| .|..++.+++.. ...+|+++|.+++-++.|++
T Consensus 24 ~~~~G~~VlV~GaGgvGl~a~~~ak~~-G~~~Vi~~d~~~~kl~~a~~ 70 (174)
T d1p0fa2 24 KVTPGSTCAVFGLGGVGFSAIVGCKAA-GASRIIGVGTHKDKFPKAIE 70 (174)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHH-TCSEEEEECSCGGGHHHHHH
T ss_pred CCCCCCEEEEECCCchhHHHHHHHHHc-CCceeeccCChHHHHHHHHH
Confidence 44567899999998 456677778876 44689999999999988875
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=83.26 E-value=0.68 Score=34.68 Aligned_cols=62 Identities=15% Similarity=0.164 Sum_probs=43.4
Q ss_pred CCccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccccccc--ccC-CCCeeEEEE
Q 020573 204 TGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKL--KDV-EGKLSGVVS 272 (324)
Q Consensus 204 cGsG~iai~la~~~~-p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l--~~~-~~~fDlIVs 272 (324)
||.|.++..+++.+. .+..|+.+|.+++.++.++.. . .+.++.||..+.- ... -...|.+++
T Consensus 6 ~G~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~---~----~~~vi~Gd~~~~~~l~~~~i~~a~~vv~ 71 (132)
T d1lssa_ 6 AGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAE---I----DALVINGDCTKIKTLEDAGIEDADMYIA 71 (132)
T ss_dssp ECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH---C----SSEEEESCTTSHHHHHHTTTTTCSEEEE
T ss_pred ECCCHHHHHHHHHHHHCCCCcceecCChhhhhhhhhh---h----hhhhccCcccchhhhhhcChhhhhhhcc
Confidence 556888888887662 356899999999988866542 2 2678999987631 111 246788877
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=82.64 E-value=3.5 Score=34.02 Aligned_cols=82 Identities=17% Similarity=0.056 Sum_probs=53.1
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccc------cccCCCC
Q 020573 194 LRDGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGK------LKDVEGK 266 (324)
Q Consensus 194 ~~~~~VLDLGcGsG~iai~la~~~-~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~------l~~~~~~ 266 (324)
+.++++|=-|.++ .|+.++|+.+ ..+++|+.+|.+++.++.+.+. . . .+..+..|..+. +.. -++
T Consensus 3 l~GK~alITGas~-GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~---~--~-~~~~~~~Dv~~~~~v~~~~~~-~g~ 74 (242)
T d1cyda_ 3 FSGLRALVTGAGK-GIGRDTVKALHASGAKVVAVTRTNSDLVSLAKE---C--P-GIEPVCVDLGDWDATEKALGG-IGP 74 (242)
T ss_dssp CTTCEEEEESTTS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH---S--T-TCEEEECCTTCHHHHHHHHTT-CCC
T ss_pred CCCCEEEEeCCCc-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHh---c--C-CCeEEEEeCCCHHHHHHHHHH-cCC
Confidence 3567788777554 4666666654 2358999999998776554433 2 1 377888888653 112 368
Q ss_pred eeEEEEcCCCCCCCCcc
Q 020573 267 LSGVVSNPPYIPSDDIS 283 (324)
Q Consensus 267 fDlIVsNPPYi~~~~~~ 283 (324)
.|++|.|--+.....+.
T Consensus 75 iDilVnnAg~~~~~~~~ 91 (242)
T d1cyda_ 75 VDLLVNNAALVIMQPFL 91 (242)
T ss_dssp CSEEEECCCCCCCBCGG
T ss_pred CeEEEECCccccchhHH
Confidence 99999997655444333
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Probab=82.37 E-value=1.5 Score=36.68 Aligned_cols=79 Identities=19% Similarity=0.157 Sum_probs=50.9
Q ss_pred CCCeEEEEcCCccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc---------cCC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVE 264 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~-~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~---------~~~ 264 (324)
+++++|=-| |++.|+.++|+.+ ..+++|+.+|.+++..+.+++ .+ ..+++.|..+.-. ...
T Consensus 4 ~GK~alITG-as~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~----~~----~~~~~~Dv~~~~~v~~~~~~~~~~~ 74 (248)
T d2d1ya1 4 AGKGVLVTG-GARGIGRAIAQAFAREGALVALCDLRPEGKEVAEA----IG----GAFFQVDLEDERERVRFVEEAAYAL 74 (248)
T ss_dssp TTCEEEEET-TTSHHHHHHHHHHHHTTCEEEEEESSTTHHHHHHH----HT----CEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeC-CCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH----cC----CeEEEEeCCCHHHHHHHHHHHHHhc
Confidence 466777666 5556766666654 235899999999887665543 22 4677888865311 113
Q ss_pred CCeeEEEEcCCCCCCCCc
Q 020573 265 GKLSGVVSNPPYIPSDDI 282 (324)
Q Consensus 265 ~~fDlIVsNPPYi~~~~~ 282 (324)
++.|++|.|--......+
T Consensus 75 G~iDiLVnnAG~~~~~~~ 92 (248)
T d2d1ya1 75 GRVDVLVNNAAIAAPGSA 92 (248)
T ss_dssp SCCCEEEECCCCCCCBCT
T ss_pred CCCCeEEEeCcCCCCCCh
Confidence 689999999665444333
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.58 E-value=2.5 Score=35.41 Aligned_cols=83 Identities=13% Similarity=0.050 Sum_probs=54.5
Q ss_pred CCCeEEEEcCCccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcccccccc---------cCC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVE 264 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~-~p~~~V~gvDis~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~---------~~~ 264 (324)
+++++|=-|+++| |+.++|+.+ ..+++|+.++.+++.++.+.+......- ..+.+...|..+... ...
T Consensus 13 ~GK~alITGassG-IG~aiA~~la~~G~~Vil~~r~~~~l~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~ 90 (269)
T d1xu9a_ 13 QGKKVIVTGASKG-IGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGA-ASAHYIAGTMEDMTFAEQFVAQAGKLM 90 (269)
T ss_dssp TTCEEEESSCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTC-SEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHhhhhc-ccchhhhhhhhhHHHHHHHHHHHHHHh
Confidence 4667777776665 666666554 1357999999999999888776654432 347777777654211 113
Q ss_pred CCeeEEEEcCCCCCC
Q 020573 265 GKLSGVVSNPPYIPS 279 (324)
Q Consensus 265 ~~fDlIVsNPPYi~~ 279 (324)
+..|+++.|--....
T Consensus 91 g~~~~li~nag~~~~ 105 (269)
T d1xu9a_ 91 GGLDMLILNHITNTS 105 (269)
T ss_dssp TSCSEEEECCCCCCC
T ss_pred CCccccccccccccc
Confidence 578999988655433
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Probab=80.54 E-value=3.4 Score=34.50 Aligned_cols=85 Identities=13% Similarity=0.027 Sum_probs=55.6
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhC-CCcEEEEEeCC-HHHHHHHHHHHHHcCCCCcEEEEEcccccccc---------cC
Q 020573 195 RDGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLN-PLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DV 263 (324)
Q Consensus 195 ~~~~VLDLGcGsG~iai~la~~~~-p~~~V~gvDis-~~al~~Ar~N~~~~gl~~rv~~~~gD~~~~l~---------~~ 263 (324)
+++.+|=-|.+ +.|+.++|+.+. .+++|+.++.+ ++.++.+.+.++..+. ++.+++.|+.+.-. ..
T Consensus 6 ~gK~alITGas-~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~g~--~~~~~~~Dvt~~~~v~~~~~~~~~~ 82 (261)
T d1geea_ 6 EGKVVVITGSS-TGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVGG--EAIAVKGDVTVESDVINLVQSAIKE 82 (261)
T ss_dssp TTCEEEETTCS-SHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTC--EEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHhcCC--cEEEEEccCCCHHHHHHHHHHHHHH
Confidence 45566655555 456666666542 35799999987 4567767777777653 58899999876311 11
Q ss_pred CCCeeEEEEcCCCCCCCCc
Q 020573 264 EGKLSGVVSNPPYIPSDDI 282 (324)
Q Consensus 264 ~~~fDlIVsNPPYi~~~~~ 282 (324)
.++.|++|.|--......+
T Consensus 83 ~G~iDiLVnnAG~~~~~~~ 101 (261)
T d1geea_ 83 FGKLDVMINNAGLENPVSS 101 (261)
T ss_dssp HSCCCEEEECCCCCCCCCG
T ss_pred hCCCCEeeccceecCCcch
Confidence 2689999999765544433
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.04 E-value=4.9 Score=34.20 Aligned_cols=88 Identities=17% Similarity=0.003 Sum_probs=58.6
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcC---CCCcEEEEEcccccccc--------
Q 020573 194 LRDGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYG---LQDIIEIRQGSWFGKLK-------- 261 (324)
Q Consensus 194 ~~~~~VLDLGcGsG~iai~la~~~-~p~~~V~gvDis~~al~~Ar~N~~~~g---l~~rv~~~~gD~~~~l~-------- 261 (324)
++++.+|=-|++ +.|+.++|+.+ ..+++|+.+|.+++.++.+.+.++... ...++.++..|..+.-.
T Consensus 10 L~gKvalITGas-~GIG~aia~~la~~Ga~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~ 88 (297)
T d1yxma1 10 LQGQVAIVTGGA-TGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKST 88 (297)
T ss_dssp TTTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCHHHHHHHHHHH
Confidence 456677766654 55666666654 235799999999998887777666432 23468999999876311
Q ss_pred -cCCCCeeEEEEcCCCCCCCCc
Q 020573 262 -DVEGKLSGVVSNPPYIPSDDI 282 (324)
Q Consensus 262 -~~~~~fDlIVsNPPYi~~~~~ 282 (324)
...++.|++|.|-.......+
T Consensus 89 ~~~~G~iDiLVnnAg~~~~~~~ 110 (297)
T d1yxma1 89 LDTFGKINFLVNNGGGQFLSPA 110 (297)
T ss_dssp HHHHSCCCEEEECCCCCCCCCG
T ss_pred HHHhCCeEEEEeeccccccCch
Confidence 113689999999765444433
|