Citrus Sinensis ID: 020585

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320----
Protein Sequence
MEDTEVRVGDVADRTRGADVASASGAGGGGARYKLMSPAKLPISRSPCIMIPPGLSPSSFLESPVLLSNVKAEPSPTTGSFFKPQAVHASVGPRTYSTTTVCSNTLNEGEASCFEFRPHSRSNMVPADLNPQRSEQYVQTQGQCQTQSFASSPTIKGEMTVSSNELSLLGPIQMATTGTIVPAEVDSDEPKQMGQPTAGIQASHSDHKGGGPSMPSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEIIYKGTHDHPKPQLSRRYSAGNMMSIQEERPDKVSSLTCRDACMVRCLMPWRQMVPLTCLP
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccEEEEEEEcccccccccccccccccccccccccccccccccccccccHHcccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccEccccccccccccHHHHHccccccccccccccccccccccccEEEccccccHHHHccccEEcccccccccccccccccccccccccccccccccHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccHHHcccEEEccccccccEEEEcccccccEEEEEEcccccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
medtevrvgdvadrtrgadvasasgaggggaryklmspaklpisrspcimippglspssflespvllsnvkaepspttgsffkpqavhasvgprtystttvcsntlnegeascfefrphsrsnmvpadlnpqrseqyvqtqgqcqtqsfassptikgemtvssnelsllgpiqmattgtivpaevdsdepkqmgqptagiqashsdhkgggpsmpsddgynwrkygqkhvkgsefprsyykcthpncevkklfershdgqiTEIIYkgthdhpkpqlsrrysagnmmsiqeerpdkvssltcrdacmvrclmpwrqmvpltclp
Flexible Loop (DISEMBL)
medtevrvgdvadrtrgadvasasgaggggarYKLMSPAKLPISRSPCIMIPPGLSPSSFLESPVLLSNVKAEPSPTTGSFFKPQAVHASVGPRTYSTTTVCSNTLNEGEASCFEFRPHSRSNMVPADLNPQRSEQYVQTQGQCQTQSFASSPTIKGEMTVSSNELSLLGPIQMATTGTIVPAEVDSDEPKQMGQPTAGIqashsdhkgggpsmpSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEIiykgthdhpkpQLSRRYSAGNMMSIqeerpdkvssltCRDACMVRclmpwrqmvpltclp
Low Complexity Region (SEG)
MEDTEVRVGDVADRTRgadvasasgaggggaRYKLMSPAKLPISRSPCIMIPPGLSPSSFLESPVLLSNVKAEPSPTTGSFFKPQAVHASVGPRTYSTTTVCSNTLNEGEASCFEFRPHSRSNMVPADLNPQRSEqyvqtqgqcqtqSFASSPTIKGEMTVSSNELSLLGPIQMATTGTIVPAEVDSDEPKQMGQPTAGIQASHSDHKGGGPSMPSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEIIYKGTHDHPKPQLSRRYSAGNMMSIQEERPDKVSSLTCRDACMVRCLMPWRQMVPLTCLP
Disordered region (IsUnstruct)
**********************************************************************************************TYSTTTVCSNTL******************************************************************************************************************NWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEIIYKG*******************************LTCRDACMVRCLMPWRQMVPLTC**
Disordered Region (DISOPRED)
*****************************************************GLSPSSFLESPVLL*******************************************************************************************************************************************************GYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEIIYKGTHD*****************************************************
Disordered Region (DISEMBL)
MEDTEVRVGDVADRTRGADVASASGAGGGGARYKLMSPAKLPISRSPCIMIPPGLSPSSFLESPVLLSNVKAEPSPTTGSFFKPQAVHASVGPRTYSTTTVCSNTLNEGEASCFEFRPHSRSNMVPADLNP*****************FASSPTIKGEMTVSSNELSLLGPIQMATTGTIVPAEVDS***************************PSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEIIYKGTHDHPKPQLSRRYSAGNMMSI**********LTCRDACMVRCLMPWRQMVPLTCLP
Disordered Region (DISPRO)
***********************************MSPAKLPISRSPCIMIPPGLSPSSFLESPVLLSNVKAEPSPTTGSFF*************************************************************************************************************************HSDHKGGGPSMPSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEIIYKGTH******************************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MEDTEVRVGDVADRTRGADVASASGAGGGGARYKLMSPAKLPISRSPCIMIPPGLSPSSFLESPVLLSNVKAEPSPTTGSFFKPQAVHASVGPRTYSTTTVCSNTLNEGEASCFEFRPHSRSNMVPADLNPQRSEQYVQTQGQCQTQSFASSPTIKGEMTVSSNELSLLGPIQMATTGTIVPAEVDSDEPKQMGQPTAGIQASHSDHKGGGPSMPSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEIIYKGTHDHPKPQLSRRYSAGNMMSIQEERPDKVSSLTCRDACMVRCLMPWRQMVPLTCLP
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	324	2.2.26 [Sep-21-2011]
Q93WV0	557	Probable WRKY transcripti	yes	no	0.802	0.466	0.603	2e-79
Q9FG77	687	Probable WRKY transcripti	no	no	0.694	0.327	0.420	7e-34
Q9XI90	514	Probable WRKY transcripti	no	no	0.611	0.385	0.364	1e-26
O65590	568	Probable WRKY transcripti	no	no	0.268	0.153	0.615	8e-25
Q93WU7	423	Probable WRKY transcripti	no	no	0.197	0.151	0.753	3e-24
Q8S8P5	519	Probable WRKY transcripti	no	no	0.182	0.113	0.783	2e-23
O22921	393	Probable WRKY transcripti	no	no	0.206	0.170	0.661	8e-22
Q9ZUU0	429	WRKY transcription factor	no	no	0.203	0.153	0.691	1e-21
Q9C5T3	309	Probable WRKY transcripti	no	no	0.231	0.242	0.631	2e-21
Q9SI37	487	WRKY transcription factor	no	no	0.259	0.172	0.527	3e-21

>sp|Q93WV0|WRK20_ARATH Probable WRKY transcription factor 20 OS=Arabidopsis thaliana GN=WRKY20 PE=2 SV=1

 Score =  296 bits (757), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 166/275 (60%), Positives = 189/275 (68%), Gaps = 15/275 (5%)

Query: 31  ARYKLMSPAKLPISRSPCIMIPPGLSPSSFLESPVLLSNVKAEPSPTTGSFFKPQAVHAS 90
           ARYKLMSPAKLPISRS  I IPPGLSP+SFLESPV +SN+K EPSPTTGS FKP+ VH S
Sbjct: 36  ARYKLMSPAKLPISRSTDITIPPGLSPTSFLESPVFISNIKPEPSPTTGSLFKPRPVHIS 95

Query: 91  VGPRTYSTTTVCSNTLNEGEASCFEFRPHSRSNMVPADLNPQRSEQYVQTQGQCQTQSFA 150
               +Y+      NT  E ++S FEFRP + SNMV A+L   RSE  V  QGQ    S +
Sbjct: 96  ASSSSYTGRGFHQNTFTEQKSSEFEFRPPA-SNMVYAELGKIRSEPPVHFQGQGHGSSHS 154

Query: 151 SSPTIKGEMTVSSNELSL-LGPIQMATTGTIVPAEVDSDEPKQMGQPTAGIQASHSDHKG 209
              +   +   SS+ELS    P QM  T + +PA  D +E          IQ S +D +G
Sbjct: 155 P--SSISDAAGSSSELSRPTPPCQMTPTSSDIPAGSDQEE---------SIQTSQNDSRG 203

Query: 210 GGPSMPSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEIIYKGT 269
             PS+ +DDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQIT+IIYKGT
Sbjct: 204 STPSILADDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITDIIYKGT 263

Query: 270 HDHPKPQLSRRYSAGNMMSIQEERPDKVSSLTCRD 304
           HDHPKPQ  RR S G  M+ QEER DK  S T RD
Sbjct: 264 HDHPKPQPGRRNSGG--MAAQEERLDKYPSSTGRD 296

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9FG77|WRKY2_ARATH Probable WRKY transcription factor 2 OS=Arabidopsis thaliana GN=WRKY2 PE=2 SV=1

 Score =  144 bits (364), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 101/240 (42%), Positives = 126/240 (52%), Gaps = 15/240 (6%)

Query: 45  RSPCIMIP-PGLSPSSFLESPVLLSNVKAEPSPTTGSF-FKPQAVHASVGPRTYSTTTVC 102
           RSPC+ I  PGLSP++ LESPV LSN  A+PSPTTG F F P      V     S+    
Sbjct: 108 RSPCLTISSPGLSPATLLESPVFLSNPLAQPSPTTGKFPFLP-----GVNGNALSSEKAK 162

Query: 103 SNTLNEGEASCFEFRPHSRSNM-VPADLNPQRSEQYVQTQGQCQTQSFASSPTIKGEMTV 161
               ++  AS F F P SRS+           S  Y     +  +   A       E   
Sbjct: 163 DEFFDDIGAS-FSFHPVSRSSSSFFQGTTEMMSVDYGNYNNRSSSHQSAEEVKPGSENIE 221

Query: 162 SSNELSLLGPIQMATTGTIVPAEVDSDEP-KQMGQPTAGIQASHSDHKGGGPSMPSDDGY 220
           SSN   L G       G    ++V ++   + +       +    D   GG   P++DGY
Sbjct: 222 SSN---LYGIETDNQNGQNKTSDVTTNTSLETVDHQEEEEEQRRGDSMAGG--APAEDGY 276

Query: 221 NWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEIIYKGTHDHPKPQLSRR 280
           NWRKYGQK VKGSE+PRSYYKCT+PNC+VKK  ERS +G ITEIIYKG H+H KP  +RR
Sbjct: 277 NWRKYGQKLVKGSEYPRSYYKCTNPNCQVKKKVERSREGHITEIIYKGAHNHLKPPPNRR 336

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9XI90|WRKY4_ARATH Probable WRKY transcription factor 4 OS=Arabidopsis thaliana GN=WRKY4 PE=1 SV=2

 Score =  120 bits (301), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 97/266 (36%), Positives = 123/266 (46%), Gaps = 68/266 (25%)

Query: 24  SGAGGGGARYKLMSPAKLPISRSPC---IMIPPGLSPSSFLESPVLLSNVKAEPSPTTGS 80
           S +G    R+K   P  L IS+S       +PPGLSP+  L+SP  L       SP  GS
Sbjct: 96  SSSGDVDPRFKQNRPTGLMISQSQSPSMFTVPPGLSPAMLLDSPSFLGLF----SPVQGS 151

Query: 81  F-FKPQAVHASVGPRTYSTTTVCSNTLNEGEASCFEFRPHSRSNMVPADLNPQRSEQYVQ 139
           +    Q   A V     +   V +N                 +NM P    P  S     
Sbjct: 152 YGMTHQQALAQV-----TAQAVQAN-----------------ANMQPQTEYPPPS----- 184

Query: 140 TQGQCQTQSFASSPTIKGEMTVSSNELSLLGPIQMATTGTIVPAEVDSDEPKQMGQPTAG 199
                Q QSF+S     G+  + +   S   P Q  T+   +  E  S +P  + +P   
Sbjct: 185 -----QVQSFSS-----GQAQIPT---SAPLPAQRETSDVTI-IEHRSQQPLNVDKP--- 227

Query: 200 IQASHSDHKGGGPSMPSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDG 259
                           +DDGYNWRKYGQK VKGSEFPRSYYKCT+P C VKK  ERS DG
Sbjct: 228 ----------------ADDGYNWRKYGQKQVKGSEFPRSYYKCTNPGCPVKKKVERSLDG 271

Query: 260 QITEIIYKGTHDHPKPQLSRRYSAGN 285
           Q+TEIIYKG H+H  PQ ++R +  N
Sbjct: 272 QVTEIIYKGQHNHEPPQNTKRGNKDN 297

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|O65590|WRK34_ARATH Probable WRKY transcription factor 34 OS=Arabidopsis thaliana GN=WRKY34 PE=2 SV=1

 Score =  114 bits (286), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 56/91 (61%), Positives = 64/91 (70%), Gaps = 4/91 (4%)

Query: 209 GGGPSM----PSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEI 264
           G G SM    P+DDGYNWRKYGQK VKGSE+PRSYYKCTHPNCE KK  ERS +G I EI
Sbjct: 166 GLGDSMACCAPADDGYNWRKYGQKLVKGSEYPRSYYKCTHPNCEAKKKVERSREGHIIEI 225

Query: 265 IYKGTHDHPKPQLSRRYSAGNMMSIQEERPD 295
           IY G H H KP  +RR   G+  + Q+ + D
Sbjct: 226 IYTGDHIHSKPPPNRRSGIGSSGTGQDMQID 256

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93WU7|WRK58_ARATH Probable WRKY transcription factor 58 OS=Arabidopsis thaliana GN=WRKY58 PE=2 SV=2

 Score =  112 bits (280), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 49/65 (75%), Positives = 54/65 (83%)

Query: 215 PSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEIIYKGTHDHPK 274
           P+DDGYNWRKYGQK +KG E+PRSYYKCTH NC VKK  ERS DGQIT+IIYKG HDH +
Sbjct: 165 PADDGYNWRKYGQKPIKGCEYPRSYYKCTHVNCPVKKKVERSSDGQITQIIYKGQHDHER 224

Query: 275 PQLSR 279
           PQ  R
Sbjct: 225 PQNRR 229

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8S8P5|WRK33_ARATH Probable WRKY transcription factor 33 OS=Arabidopsis thaliana GN=WRKY33 PE=1 SV=2

 Score =  110 bits (275), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 47/60 (78%), Positives = 52/60 (86%)

Query: 217 DDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEIIYKGTHDHPKPQ 276
           +DGYNWRKYGQK VKGSE PRSYYKCT PNC  KK  ERS +GQITEI+YKG+H+HPKPQ
Sbjct: 184 EDGYNWRKYGQKQVKGSENPRSYYKCTFPNCPTKKKVERSLEGQITEIVYKGSHNHPKPQ 243

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|O22921|WRK25_ARATH Probable WRKY transcription factor 25 OS=Arabidopsis thaliana GN=WRKY25 PE=1 SV=1

 Score =  104 bits (260), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 45/68 (66%), Positives = 55/68 (80%)

Query: 213 SMPSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEIIYKGTHDH 272
           S  S+DGY WRKYGQK VK SE PRSY+KCT+P+C  KK+ E + DGQITEIIYKG H+H
Sbjct: 162 SRNSNDGYGWRKYGQKQVKKSENPRSYFKCTYPDCVSKKIVETASDGQITEIIYKGGHNH 221

Query: 273 PKPQLSRR 280
           PKP+ ++R
Sbjct: 222 PKPEFTKR 229

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZUU0|WRK44_ARATH WRKY transcription factor 44 OS=Arabidopsis thaliana GN=WRKY44 PE=1 SV=2

 Score =  103 bits (258), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 47/68 (69%), Positives = 54/68 (79%), Gaps = 2/68 (2%)

Query: 218 DGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEIIYKGTHDHPKPQ- 276
           DGYNWRKYGQK VKGSE PRSYYKCTHP C VKK  ERS +GQ++EI+Y+G H+H KP  
Sbjct: 166 DGYNWRKYGQKQVKGSECPRSYYKCTHPKCPVKKKVERSVEGQVSEIVYQGEHNHSKPSC 225

Query: 277 -LSRRYSA 283
            L RR S+
Sbjct: 226 PLPRRASS 233

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Regulates trichome development, production of mucilage and tannin in seed coats, and maybe root hair development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C5T3|WRK26_ARATH Probable WRKY transcription factor 26 OS=Arabidopsis thaliana GN=WRKY26 PE=2 SV=2

 Score =  103 bits (256), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 48/76 (63%), Positives = 59/76 (77%), Gaps = 1/76 (1%)

Query: 216 SDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSH-DGQITEIIYKGTHDHPK 274
           SDDGYNWRKYGQK VKGSE PRSY+KCT+PNC  KK  E S   GQ+ EI+YKG+H+HPK
Sbjct: 116 SDDGYNWRKYGQKQVKGSENPRSYFKCTYPNCLTKKKVETSLVKGQMIEIVYKGSHNHPK 175

Query: 275 PQLSRRYSAGNMMSIQ 290
           PQ ++R S+  + + Q
Sbjct: 176 PQSTKRSSSTAIAAHQ 191

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SI37|WRKY1_ARATH WRKY transcription factor 1 OS=Arabidopsis thaliana GN=WRKY1 PE=1 SV=1

 Score =  102 bits (255), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 48/91 (52%), Positives = 59/91 (64%), Gaps = 7/91 (7%)

Query: 217 DDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEIIYKGTHDHPKP- 275
           +DGYNWRKYGQK VKG+EF RSYY+CTHPNC+ KK  ERS  GQ+ + +Y G HDHPKP 
Sbjct: 111 EDGYNWRKYGQKLVKGNEFVRSYYRCTHPNCKAKKQLERSAGGQVVDTVYFGEHDHPKPL 170

Query: 276 ------QLSRRYSAGNMMSIQEERPDKVSSL 300
                    +R      +S  E+R D VS +
Sbjct: 171 AGAVPINQDKRSDVFTAVSKGEQRIDIVSLI 201

Transcription factor. Binds to a 5'-CGTTGACCGAG-3' consensus core sequence which contains a W box, a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	324
255576310	562	WRKY transcription factor, putative [Ric	0.876	0.505	0.721	1e-114
224056431	557	predicted protein [Populus trichocarpa]	0.848	0.493	0.713	1e-109
224114435	539	predicted protein [Populus trichocarpa]	0.845	0.508	0.693	1e-101
359494165	580	PREDICTED: probable WRKY transcription f	0.876	0.489	0.655	3e-99
356569659	577	PREDICTED: probable WRKY transcription f	0.842	0.473	0.651	1e-95
356501612	588	PREDICTED: probable WRKY transcription f	0.864	0.476	0.633	7e-94
297737535	552	unnamed protein product [Vitis vinifera]	0.830	0.487	0.638	4e-92
357459955	595	WRKY transcription factor [Medicago trun	0.845	0.460	0.629	6e-92
356524334	577	PREDICTED: probable WRKY transcription f	0.839	0.471	0.628	5e-91
357494813	545	WRKY transcription factor [Medicago trun	0.796	0.473	0.615	7e-86

>gi|255576310|ref|XP_002529048.1| WRKY transcription factor, putative [Ricinus communis] gi|223531528|gb|EEF33359.1| WRKY transcription factor, putative [Ricinus communis]

 Score =  416 bits (1068), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 207/287 (72%), Positives = 229/287 (79%), Gaps = 3/287 (1%)

Query: 19  DVASASGAGGGGARYKLMSPAKLPISRSPCIMIPPGLSPSSFLESPVLLSNVKAEPSPTT 78
           D  S S A  GGARYKLMSPAKLPISRSPCI IPPGLSP+SFLESPVLLSNVKAEPSPTT
Sbjct: 15  DSDSGSAASVGGARYKLMSPAKLPISRSPCITIPPGLSPTSFLESPVLLSNVKAEPSPTT 74

Query: 79  GSFFKPQAVHASVGPRTYSTTTVCSNTLNEGEASCFEFRPHSRSNMVPADLNPQRSEQYV 138
           GSF KP   H S+G   YS T V SN   E  +SCFEFRPH RSN+VPAD++ + +EQ V
Sbjct: 75  GSFAKPPTGHGSLGSNPYSATAVPSNAFGERTSSCFEFRPHPRSNLVPADVHHRITEQSV 134

Query: 139 QTQGQCQTQSFASSPTIKGEMTVSSNELSLLGPIQMATTGTIVPAEVDSDEPKQMGQPTA 198
           Q QG CQ QS ASSP +K EM VSSNE SL  P  + ++GT  P EV+SDE  Q+G    
Sbjct: 135 QVQGHCQNQSLASSPRVKSEMAVSSNEFSLSAP--LPSSGTSAPGEVESDELNQIGVSNN 192

Query: 199 GIQASHSDHKGG-GPSMPSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSH 257
           G+QAS +DHKGG G SMPSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSH
Sbjct: 193 GLQASQTDHKGGSGISMPSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSH 252

Query: 258 DGQITEIIYKGTHDHPKPQLSRRYSAGNMMSIQEERPDKVSSLTCRD 304
           DGQITEIIYKGTHDHPKPQ SRRYS+G ++S+QE+R DK+ SL  RD
Sbjct: 253 DGQITEIIYKGTHDHPKPQPSRRYSSGAVLSMQEDRSDKILSLPGRD 299

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224056431|ref|XP_002298853.1| predicted protein [Populus trichocarpa] gi|222846111|gb|EEE83658.1| predicted protein [Populus trichocarpa]

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 197/276 (71%), Positives = 223/276 (80%), Gaps = 1/276 (0%)

Query: 26  AGGGGARYKLMSPAKLPISRSPCIMIPPGLSPSSFLESPVLLSNVKAEPSPTTGSFFKPQ 85
           +GGGGARYKLMSPAKLPISRS CI IPPGLSP+SFLESPVLLSNVKAEPSPTTG+F KP+
Sbjct: 21  SGGGGARYKLMSPAKLPISRSACITIPPGLSPTSFLESPVLLSNVKAEPSPTTGTFTKPR 80

Query: 86  AVHASVGPRTYSTTTVCSNTLNEGEASCFEFRPHSRSNMVPADLNPQRSEQYVQTQGQCQ 145
               S+    YS TTV S    E ++  FEFRP++RSNMV AD+N QRS Q  Q Q QC 
Sbjct: 81  TALGSLSSTPYSATTVSSTACGERKSDYFEFRPYARSNMVSADINHQRSTQCAQVQSQCH 140

Query: 146 TQSFASSPTIKGEMTVSSNELSLLGPIQMATTGTIVPAEVDSDEPKQMGQPTAGIQASHS 205
           +QSFAS P +KGEM VS+NELSL   + M T+    PAEVDSDE  Q G  ++G+QAS S
Sbjct: 141 SQSFASPPLVKGEMEVSTNELSLSASLHMVTSVASAPAEVDSDELNQTGLSSSGLQASQS 200

Query: 206 DHKGG-GPSMPSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEI 264
           DH+ G  PSM SDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEI
Sbjct: 201 DHRAGTAPSMSSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEI 260

Query: 265 IYKGTHDHPKPQLSRRYSAGNMMSIQEERPDKVSSL 300
           IYKGTHDHPKPQ SRRY++G+++S+QE+R DK SSL
Sbjct: 261 IYKGTHDHPKPQPSRRYASGSVLSMQEDRFDKSSSL 296

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224114435|ref|XP_002316759.1| predicted protein [Populus trichocarpa] gi|222859824|gb|EEE97371.1| predicted protein [Populus trichocarpa]

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 192/277 (69%), Positives = 223/277 (80%), Gaps = 3/277 (1%)

Query: 28  GGGARYKLMSPAKLPISRSPCIMIPPGLSPSSFLESPVLLSNVKAEPSPTTGSFFKPQAV 87
           GGGARYKLMSPAKLPISRS C MI PGLSP+SFLESPVLLSNVKAEPSPTTG+F  PQ V
Sbjct: 1   GGGARYKLMSPAKLPISRSACTMISPGLSPTSFLESPVLLSNVKAEPSPTTGTFTNPQTV 60

Query: 88  HASVGPRTYSTTTVCSNTLNEGEASCFEFRPHSRSNMVPADLNPQRSEQYVQTQGQCQTQ 147
             S+   +Y  TTV S    E +++CFEFRPH+RS+MV AD+N QRS Q V+ Q QCQ+Q
Sbjct: 61  LGSLSSTSYPATTVYSTNFGERKSNCFEFRPHARSDMVSADMNHQRSAQCVKVQSQCQSQ 120

Query: 148 SFASSPTIKGEMTVSSNELSLLGPIQMATTGTIVPAEVDSDEPKQMGQPTAGIQASHSDH 207
           SF SSP++KGEM V +NEL+L  P+ M T+G+ VPAEVDSDE  QMG  ++G++AS S  
Sbjct: 121 SFPSSPSVKGEMAVCTNELTLSTPLHMVTSGSSVPAEVDSDELNQMGLSSSGLRASQS-- 178

Query: 208 KGGGPSMPSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEIIYK 267
            G  P++ SDDGY WRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFE SHDGQITEIIYK
Sbjct: 179 -GSAPTVSSDDGYKWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFECSHDGQITEIIYK 237

Query: 268 GTHDHPKPQLSRRYSAGNMMSIQEERPDKVSSLTCRD 304
           GTHDHPKPQ SRRY++G+ + + EER DK SSL  +D
Sbjct: 238 GTHDHPKPQPSRRYASGSGLFMLEERFDKFSSLPSQD 274

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359494165|ref|XP_002274204.2| PREDICTED: probable WRKY transcription factor 20-like [Vitis vinifera]

 Score =  368 bits (944), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 192/293 (65%), Positives = 222/293 (75%), Gaps = 9/293 (3%)

Query: 18  ADVASASGAGGGGARYKLMSPAKLPISRSPCIMIPPGLSPSSFLESPVLLSNVKAEPSPT 77
           ++VAS S    GGARY+LMSPAKLPISRSPC+ IP GLSPSSFL+SPVLLSN+K EPSPT
Sbjct: 24  SNVASGSD---GGARYRLMSPAKLPISRSPCLTIPSGLSPSSFLDSPVLLSNMKVEPSPT 80

Query: 78  TGSFFKPQAVHASVGPRTYSTTTVCSNT--LNEGEASCFEFRPHSRSNMVPADLNPQRSE 135
           TGSF KPQ +H SVG   +S+T+ CSN+   +E ++  FEF+PH+ SN V ADLN Q+ +
Sbjct: 81  TGSFAKPQMIHGSVGSSMFSSTSNCSNSNTFDERKSGSFEFKPHTVSNSVSADLNHQQVK 140

Query: 136 QYVQTQGQCQTQSFASSPTIKGEMTVSSNELSLLGPIQMATTGTIVPAEVDSDEPKQMGQ 195
            ++  Q Q    S   SPT+K EM   SNELSL  P  M T+    PAEVDSDE  Q G 
Sbjct: 141 PFIPVQAQHPDLSLMPSPTVKSEMMAPSNELSLCSPGHMVTSLESAPAEVDSDELNQQGH 200

Query: 196 PTAGIQASHSDHKGGGPSM----PSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKK 251
           P  G+QAS SD KG GPS      S+DGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKK
Sbjct: 201 PNNGVQASQSDQKGIGPSAVVERSSEDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKK 260

Query: 252 LFERSHDGQITEIIYKGTHDHPKPQLSRRYSAGNMMSIQEERPDKVSSLTCRD 304
           LFER+HDGQI EIIYKGTHDHPKPQ SRRY++G ++ +QEERPDKVSSL  RD
Sbjct: 261 LFERAHDGQIVEIIYKGTHDHPKPQPSRRYASGAILPVQEERPDKVSSLIGRD 313

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356569659|ref|XP_003553015.1| PREDICTED: probable WRKY transcription factor 20-like [Glycine max]

 Score =  356 bits (913), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 185/284 (65%), Positives = 210/284 (73%), Gaps = 11/284 (3%)

Query: 32  RYKLMSPAKLPISRSPCIMIPPGLSPSSFLESPVLLSNVKAEPSPTTGSF-FKPQAVHAS 90
           RYKLMSPAKLPISRSPC+ IPPGLSP+SFLESPVLLSN+K EPSPTTGS     Q  H S
Sbjct: 28  RYKLMSPAKLPISRSPCVTIPPGLSPTSFLESPVLLSNMKVEPSPTTGSLSLLHQTAHGS 87

Query: 91  V---GPRTYSTTTVC--SNTLNEGEASCFEFRPHSRSNMVPADLNPQRSEQYVQTQGQCQ 145
           V      T+  TTVC  +NT+++ + S FEF+PH+RSNMVPAD +   SE+  Q  GQ +
Sbjct: 88  VTSAASSTFPVTTVCFNTNTVDDRKPSFFEFKPHNRSNMVPADFDNHASEKSTQIDGQGK 147

Query: 146 TQSFASSPTIKGEMTVSSNELSLLGPIQMATTGTIVPAEVDSDEPKQMGQPTAGIQASHS 205
            Q+F SSP +K E    SNELSL  P+QM  +G     E D DE       T G+QAS  
Sbjct: 148 AQAFDSSPLVKNESASPSNELSLSSPVQMDCSGGSARVEGDLDELNPRSNITTGLQASQV 207

Query: 206 DHKGGGPSMP----SDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQI 261
           D++G G S+     SDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQI
Sbjct: 208 DNRGSGLSVAADRVSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQI 267

Query: 262 TEIIYKGTHDHPKPQLSRRYSAGNMMSIQEERPDKVSSLTCRDA 305
           TEIIYKGTHDHPKPQ +RRYSAG +MS+QEER DKV SLT RD 
Sbjct: 268 TEIIYKGTHDHPKPQPNRRYSAGTIMSVQEERSDKV-SLTSRDG 310

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356501612|ref|XP_003519618.1| PREDICTED: probable WRKY transcription factor 20-like [Glycine max]

 Score =  350 bits (897), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 185/292 (63%), Positives = 213/292 (72%), Gaps = 12/292 (4%)

Query: 24  SGAG-GGGARYKLMSPAKLPISRSPCIMIPPGLSPSSFLESPVLLSNVKAEPSPTTGSFF 82
           SG+G    ARYKLMSPAKLPISRSPCI IPPGLSP+SFLESPVLLSN+K E SPTTGS  
Sbjct: 29  SGSGQNSTARYKLMSPAKLPISRSPCITIPPGLSPTSFLESPVLLSNMKVEASPTTGSLR 88

Query: 83  K-PQAVH---ASVGPRTYSTTTVC--SNTLNEGEASCFEFRPHSRSNMVPADLNPQRSEQ 136
           K  Q VH   AS    T+  TT C  +NT++  ++S FEF+P +RSN VPAD N   S+Q
Sbjct: 89  KLQQTVHGSMASAASATFPVTTACFNTNTVDARKSSFFEFKPLNRSNKVPADFNNHVSKQ 148

Query: 137 YVQTQGQCQTQSFASSPTIKGEMTVSSNELSLLGPIQMATTGTIVPAEVDSDEPKQMGQP 196
             Q +G  + QSFASSP ++ E+TV SNELSL  P+QM ++    P +VD DE    G  
Sbjct: 149 STQVEGPGKAQSFASSPLVESEITVPSNELSLSSPVQMVSSSASAPVDVDLDEINHKGNT 208

Query: 197 TAGIQASHSDHKGGGPSMP----SDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKL 252
             G+QASH + +G G S+     SDDGYNWRKYGQK VKGSEFPRSYYKCTHPNCEVKKL
Sbjct: 209 ATGLQASHVEVRGSGLSVAAEKTSDDGYNWRKYGQKLVKGSEFPRSYYKCTHPNCEVKKL 268

Query: 253 FERSHDGQITEIIYKGTHDHPKPQLSRRYSAGNMMSIQEERPDKVSSLTCRD 304
           FERSHDGQITEI+YKGTHDHPKPQ S RYS G +M IQ ER DK +SL  RD
Sbjct: 269 FERSHDGQITEIVYKGTHDHPKPQSSCRYSTGTVMYIQGERSDK-ASLAGRD 319

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297737535|emb|CBI26736.3| unnamed protein product [Vitis vinifera]

 Score =  344 bits (882), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 182/285 (63%), Positives = 209/285 (73%), Gaps = 16/285 (5%)

Query: 36  MSPAKLPISRSPCIMIPPGLSPSSFLESPVLLSNVKAEPSPTTGSFFKPQAVHASVGPRT 95
           MSPAKLPISRSPC+ IP GLSPSSFL+SPVLLSN+K EPSPTTGSF KPQ +H SVG   
Sbjct: 1   MSPAKLPISRSPCLTIPSGLSPSSFLDSPVLLSNMKVEPSPTTGSFAKPQMIHGSVGSSM 60

Query: 96  YSTTTVCSNT--LNEGEASCFEFRPHSRSNM----------VPADLNPQRSEQYVQTQGQ 143
           +S+T+ CSN+   +E ++  FEF+PH+ SN           V ADLN Q+ + ++  Q Q
Sbjct: 61  FSSTSNCSNSNTFDERKSGSFEFKPHTVSNSASGLFLVGSPVSADLNHQQVKPFIPVQAQ 120

Query: 144 CQTQSFASSPTIKGEMTVSSNELSLLGPIQMATTGTIVPAEVDSDEPKQMGQPTAGIQAS 203
               S   SPT+K EM   SNELSL  P  M T+    PAEVDSDE  Q G P  G+QAS
Sbjct: 121 HPDLSLMPSPTVKSEMMAPSNELSLCSPGHMVTSLESAPAEVDSDELNQQGHPNNGVQAS 180

Query: 204 HSDHKGGGPSM----PSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDG 259
            SD KG GPS      S+DGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFER+HDG
Sbjct: 181 QSDQKGIGPSAVVERSSEDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERAHDG 240

Query: 260 QITEIIYKGTHDHPKPQLSRRYSAGNMMSIQEERPDKVSSLTCRD 304
           QI EIIYKGTHDHPKPQ SRRY++G ++ +QEERPDKVSSL  RD
Sbjct: 241 QIVEIIYKGTHDHPKPQPSRRYASGAILPVQEERPDKVSSLIGRD 285

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357459955|ref|XP_003600259.1| WRKY transcription factor [Medicago truncatula] gi|355489307|gb|AES70510.1| WRKY transcription factor [Medicago truncatula]

 Score =  343 bits (880), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 180/286 (62%), Positives = 208/286 (72%), Gaps = 12/286 (4%)

Query: 30  GARYKLMSPAKLPISRSPCIMIPPGLSPSSFLESPVLLSNVKAEPSPTTGSFFK-PQAVH 88
           GARYKLMSPAKLPISRSP + IPPGLSP+SFLESPVLLSN+K EPSPTTGS  +  Q VH
Sbjct: 45  GARYKLMSPAKLPISRSPVLTIPPGLSPTSFLESPVLLSNMKVEPSPTTGSLPRLQQTVH 104

Query: 89  ASVGPRT---YSTTTVC--SNTLNEGEASCFEFRPHSRSNMVPADLNPQRSEQYVQTQGQ 143
             V   T   +  T+ C  SN++++G++S FEF+PHSRSNMVPAD      EQ  Q  GQ
Sbjct: 105 GFVTSSTSAAFPVTSACFNSNSVDDGKSSFFEFKPHSRSNMVPADFYNHACEQSTQIDGQ 164

Query: 144 CQTQSFASSPTIKGEMTVSSNELSLLG-PIQMATTGTIVPAEVDSDEPKQMGQPTAGIQA 202
              +SF SS  +K E  V S+E+SL   P+QM ++G     EVD DE    G    G+Q 
Sbjct: 165 GNVKSFVSSALVKSETAVPSDEISLSSSPVQMISSGASAHVEVDLDESNPSGSKATGLQV 224

Query: 203 SHSDHKGGGPSMP----SDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHD 258
           S  D +G G S+     SDDGYNWRKYGQK VKG EFPRSYYKCTHPNCEVKKLFERSHD
Sbjct: 225 SQVDGRGNGLSVAADKASDDGYNWRKYGQKLVKGCEFPRSYYKCTHPNCEVKKLFERSHD 284

Query: 259 GQITEIIYKGTHDHPKPQLSRRYSAGNMMSIQEERPDKVSSLTCRD 304
           GQITEI+YKGTHDHPKPQ SRR+S GNMMS+QEER D+ +SLT RD
Sbjct: 285 GQITEIVYKGTHDHPKPQPSRRFSGGNMMSVQEERSDR-ASLTSRD 329

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356524334|ref|XP_003530784.1| PREDICTED: probable WRKY transcription factor 20 [Glycine max]

 Score =  340 bits (872), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 178/283 (62%), Positives = 206/283 (72%), Gaps = 11/283 (3%)

Query: 32  RYKLMSPAKLPISRSPCIMIPPGLSPSSFLESPVLLSNVKAEPSPTTGSF-FKPQAVHAS 90
           RYKL+SPAKLPISRSPC+ I PGLSP+SFLESPVLLSN+K EPSPTTGS     Q  + S
Sbjct: 28  RYKLLSPAKLPISRSPCVTISPGLSPTSFLESPVLLSNMKVEPSPTTGSLSLLHQTAYGS 87

Query: 91  V---GPRTYSTTTVC--SNTLNEGEASCFEFRPHSRSNMVPADLNPQRSEQYVQTQGQCQ 145
           +      T+  TTVC  SNT++E + S FEF+PHS SNMVPAD +   SE+  Q   Q +
Sbjct: 88  MTSAASATFPVTTVCFNSNTVDERKPSFFEFKPHSGSNMVPADFDNHASEKSTQIDSQGK 147

Query: 146 TQSFASSPTIKGEMTVSSNELSLLGPIQMATTGTIVPAEVDSDEPKQMGQPTAGIQASHS 205
            Q+F SS  +K E    SNELSL  P+QM  +G     E D DE       T G+QAS  
Sbjct: 148 AQAFDSSALVKNESASPSNELSLSSPVQMDCSGASARVEGDLDELNPRSNITTGLQASQV 207

Query: 206 DHKGGGPSMP----SDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQI 261
           D++G G ++     SDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQI
Sbjct: 208 DNRGSGLTVAAERVSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQI 267

Query: 262 TEIIYKGTHDHPKPQLSRRYSAGNMMSIQEERPDKVSSLTCRD 304
           TEIIYKGTHDHPKPQ +RRYSAG +MS+QE+R DK +SLT RD
Sbjct: 268 TEIIYKGTHDHPKPQPNRRYSAGTIMSVQEDRSDK-ASLTSRD 309

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357494813|ref|XP_003617695.1| WRKY transcription factor [Medicago truncatula] gi|355519030|gb|AET00654.1| WRKY transcription factor [Medicago truncatula]

 Score =  323 bits (828), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 171/278 (61%), Positives = 195/278 (70%), Gaps = 20/278 (7%)

Query: 31  ARYKLMSPAKLPISRSPCIMIPPGLSPSSFLESPVLLSNVKAEPSPTTGSFFKPQAVHAS 90
           ARYKLMSPAKLPISRSPCI IP G SP+S LESPVLLSN+K EPSPTTGS    QA++ S
Sbjct: 27  ARYKLMSPAKLPISRSPCITIPAGYSPTSLLESPVLLSNMKVEPSPTTGSLL--QALNCS 84

Query: 91  VGPRTYSTTTVCSNT--LNEGEASCFEFRPHSRSNMVPADLNPQRSEQYVQTQGQCQTQS 148
           +   T+  T+ C NT  +N  ++S FEF+P  R NMVPAD N   SE+  Q +G    QS
Sbjct: 85  MASATFPVTSACFNTSTVNGRKSSFFEFKPQDR-NMVPADFNNHVSEKSTQMEGSGNGQS 143

Query: 149 FASSPTIKGEMTVSSNELSLLG-PIQMATTGTIVPAEVDSDEPKQMGQPTAGIQASHSDH 207
           F SSP  + E+   SNELSL   P+ M ++G   P  V+SDEP   G    G Q+S    
Sbjct: 144 FRSSPLNENEIEDQSNELSLSSSPVHMVSSGASAPVNVNSDEPNHKGSTANGPQSS---- 199

Query: 208 KGGGPSMPSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEIIYK 267
                    +DGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEIIYK
Sbjct: 200 ---------NDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEIIYK 250

Query: 268 GTHDHPKPQLSRRYSAGNMMSIQEERPD-KVSSLTCRD 304
           GTHDHPKPQ S RYSAG++MS Q ER D + SSL  RD
Sbjct: 251 GTHDHPKPQPSNRYSAGSVMSTQGERSDNRASSLAVRD 288

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	324
TAIR|locus:2133852	557	WRKY20 [Arabidopsis thaliana (	0.799	0.464	0.594	1.5e-74
TAIR|locus:2169354	309	WRKY26 "WRKY DNA-binding prote	0.283	0.297	0.536	1.2e-35
TAIR|locus:2177596	687	WRKY2 "WRKY DNA-binding protei	0.731	0.344	0.389	2.1e-35
TAIR|locus:2014799	514	WRKY4 "WRKY DNA-binding protei	0.330	0.208	0.518	1.1e-31
TAIR|locus:2131503	568	WRKY34 "WRKY DNA-binding prote	0.268	0.153	0.619	1.9e-30
TAIR|locus:2063835	513	WRKY3 "WRKY DNA-binding protei	0.271	0.171	0.602	4.2e-30
TAIR|locus:2060805	393	WRKY25 "WRKY DNA-binding prote	0.234	0.193	0.618	2.6e-29
TAIR|locus:2057212	519	WRKY33 "AT2G38470" [Arabidopsi	0.234	0.146	0.671	7.5e-27
TAIR|locus:2049852	429	TTG2 "TRANSPARENT TESTA GLABRA	0.256	0.193	0.593	1.3e-25
TAIR|locus:2102147	423	WRKY58 "WRKY DNA-binding prote	0.212	0.163	0.728	2.2e-25

TAIR|locus:2133852 WRKY20 [Arabidopsis thaliana (taxid:3702)]

 Score = 752 (269.8 bits), Expect = 1.5e-74, P = 1.5e-74
 Identities = 163/274 (59%), Positives = 185/274 (67%)

Query:    32 RYKLMSPAKLPISRSPCIMIPPGLSPSSFLESPVLLSNVKAEPSPTTGSFFKPQAVHASV 91
             RYKLMSPAKLPISRS  I IPPGLSP+SFLESPV +SN+K EPSPTTGS FKP+ VH S 
Sbjct:    37 RYKLMSPAKLPISRSTDITIPPGLSPTSFLESPVFISNIKPEPSPTTGSLFKPRPVHISA 96

Query:    92 GPRTYSTTTVCSNTLNEGEASCFEFRPHSRSNMVPADLNPQRSEXXXXXXXXXXXXSFAS 151
                +Y+      NT  E ++S FEFRP + SNMV A+L   RSE            S   
Sbjct:    97 SSSSYTGRGFHQNTFTEQKSSEFEFRPPA-SNMVYAELGKIRSEPPVHFQGQGHGSSH-- 153

Query:   152 SPTIKGEMTVSSNELSL-LGPIQMATTGTIVPAEVDSDEPKQMGQPTAGIQASHSDHKGG 210
             SP+   +   SS+ELS    P QM  T + +PA  D +E          IQ S +D +G 
Sbjct:   154 SPSSISDAAGSSSELSRPTPPCQMTPTSSDIPAGSDQEE---------SIQTSQNDSRGS 204

Query:   211 GPSMPSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEIIYKGTH 270
              PS+ +DDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQIT+IIYKGTH
Sbjct:   205 TPSILADDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITDIIYKGTH 264

Query:   271 DHPKPQLSRRYSAGNMMSIQEERPDKVSSLTCRD 304
             DHPKPQ  RR S G  M+ QEER DK  S T RD
Sbjct:   265 DHPKPQPGRRNSGG--MAAQEERLDKYPSSTGRD 296

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009611 "response to wounding" evidence=IEP

GO:0009961 "response to 1-aminocyclopropane-1-carboxylic acid" evidence=IEP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0009616 "virus induced gene silencing" evidence=RCA

GO:0010050 "vegetative phase change" evidence=RCA

TAIR|locus:2169354 WRKY26 "WRKY DNA-binding protein 26" [Arabidopsis thaliana (taxid:3702)]

 Score = 263 (97.6 bits), Expect = 1.2e-35, Sum P(2) = 1.2e-35
 Identities = 51/95 (53%), Positives = 64/95 (67%)

Query:   190 PKQMGQPTAGIQASHSDHKGGGPSMPSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEV 249
             P  + QP   +    S+      +  SDDGYNWRKYGQK VKGSE PRSY+KCT+PNC  
Sbjct:    92 PSMVTQPLPQLDLFKSEIMSSNKT--SDDGYNWRKYGQKQVKGSENPRSYFKCTYPNCLT 149

Query:   250 KKLFERSH-DGQITEIIYKGTHDHPKPQLSRRYSA 283
             KK  E S   GQ+ EI+YKG+H+HPKPQ ++R S+
Sbjct:   150 KKKVETSLVKGQMIEIVYKGSHNHPKPQSTKRSSS 184

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0034605 "cellular response to heat" evidence=IMP

GO:0070370 "cellular heat acclimation" evidence=IMP

TAIR|locus:2177596 WRKY2 "WRKY DNA-binding protein 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 389 (142.0 bits), Expect = 2.1e-35, P = 2.1e-35
 Identities = 106/272 (38%), Positives = 138/272 (50%)

Query:    45 RSPCIMIP-PGLSPSSFLESPVLLSNVKAEPSPTTGSF-FKPQAVHASVGPRTYSTTTVC 102
             RSPC+ I  PGLSP++ LESPV LSN  A+PSPTTG F F P      V     S+    
Sbjct:   108 RSPCLTISSPGLSPATLLESPVFLSNPLAQPSPTTGKFPFLP-----GVNGNALSSEKAK 162

Query:   103 SNTLNEGEASCFEFRPHSRSN---------MVPADLNP--QRSEXXXXXXXXXXXXSFAS 151
                 ++  AS F F P SRS+         M+  D      RS                 
Sbjct:   163 DEFFDDIGAS-FSFHPVSRSSSSFFQGTTEMMSVDYGNYNNRSSSHQSAEEVKPGSENIE 221

Query:   152 SPTIKGEMTVSSNELSLLGPIQMATTGTIVPAEVDSDEPKQMGQPTAGIQASHSDHKGGG 211
             S  + G  T + N  +    +   TT T +   VD  E ++        +    D   GG
Sbjct:   222 SSNLYGIETDNQNGQNKTSDV---TTNTSLET-VDHQEEEE--------EQRRGDSMAGG 269

Query:   212 PSMPSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEIIYKGTHD 271
                P++DGYNWRKYGQK VKGSE+PRSYYKCT+PNC+VKK  ERS +G ITEIIYKG H+
Sbjct:   270 A--PAEDGYNWRKYGQKLVKGSEYPRSYYKCTNPNCQVKKKVERSREGHITEIIYKGAHN 327

Query:   272 HPKPQLSRR--YSAGNMMSIQEERPDKVSSLT 301
             H KP  +RR          +++++  + S+ T
Sbjct:   328 HLKPPPNRRSGMQVDGTEQVEQQQQQRDSAAT 359

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS;IMP

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009942 "longitudinal axis specification" evidence=IMP

GO:0030010 "establishment of cell polarity" evidence=IMP

TAIR|locus:2014799 WRKY4 "WRKY DNA-binding protein 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 297 (109.6 bits), Expect = 1.1e-31, Sum P(2) = 1.1e-31
 Identities = 56/108 (51%), Positives = 71/108 (65%)

Query:   183 AEVDSDEPKQMGQPTAGIQA-SHSDHKGGGPSMPSDDGYNWRKYGQKHVKGSEFPRSYYK 241
             A++ +  P    + T+ +    H   +      P+DDGYNWRKYGQK VKGSEFPRSYYK
Sbjct:   194 AQIPTSAPLPAQRETSDVTIIEHRSQQPLNVDKPADDGYNWRKYGQKQVKGSEFPRSYYK 253

Query:   242 CTHPNCEVKKLFERSHDGQITEIIYKGTHDHPKPQLSRRYSAGNMMSI 289
             CT+P C VKK  ERS DGQ+TEIIYKG H+H  PQ ++R +  N  +I
Sbjct:   254 CTNPGCPVKKKVERSLDGQVTEIIYKGQHNHEPPQNTKRGNKDNTANI 301

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0003677 "DNA binding" evidence=ISS

TAIR|locus:2131503 WRKY34 "WRKY DNA-binding protein 34" [Arabidopsis thaliana (taxid:3702)]

 Score = 286 (105.7 bits), Expect = 1.9e-30, Sum P(2) = 1.9e-30
 Identities = 57/92 (61%), Positives = 65/92 (70%)

Query:   209 GG-GPSM----PSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITE 263
             GG G SM    P+DDGYNWRKYGQK VKGSE+PRSYYKCTHPNCE KK  ERS +G I E
Sbjct:   165 GGLGDSMACCAPADDGYNWRKYGQKLVKGSEYPRSYYKCTHPNCEAKKKVERSREGHIIE 224

Query:   264 IIYKGTHDHPKPQLSRRYSAGNMMSIQEERPD 295
             IIY G H H KP  +RR   G+  + Q+ + D
Sbjct:   225 IIYTGDHIHSKPPPNRRSGIGSSGTGQDMQID 256

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009409 "response to cold" evidence=IEP

GO:0009846 "pollen germination" evidence=IMP

TAIR|locus:2063835 WRKY3 "WRKY DNA-binding protein 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 284 (105.0 bits), Expect = 4.2e-30, Sum P(2) = 4.2e-30
 Identities = 53/88 (60%), Positives = 60/88 (68%)

Query:   189 EPKQMGQPTAGIQASHSDHKGGGPSMPSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCE 248
             E  Q  + T+ I       +      P+DDGYNWRKYGQK VKGS+FPRSYYKCTHP C 
Sbjct:   222 ETSQGQRETSEISVFEHRSQPQNADKPADDGYNWRKYGQKQVKGSDFPRSYYKCTHPACP 281

Query:   249 VKKLFERSHDGQITEIIYKGTHDHPKPQ 276
             VKK  ERS DGQ+TEIIYKG H+H  PQ
Sbjct:   282 VKKKVERSLDGQVTEIIYKGQHNHELPQ 309

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:2060805 WRKY25 "WRKY DNA-binding protein 25" [Arabidopsis thaliana (taxid:3702)]

 Score = 263 (97.6 bits), Expect = 2.6e-29, Sum P(2) = 2.6e-29
 Identities = 47/76 (61%), Positives = 59/76 (77%)

Query:   213 SMPSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEIIYKGTHDH 272
             S  S+DGY WRKYGQK VK SE PRSY+KCT+P+C  KK+ E + DGQITEIIYKG H+H
Sbjct:   162 SRNSNDGYGWRKYGQKQVKKSENPRSYFKCTYPDCVSKKIVETASDGQITEIIYKGGHNH 221

Query:   273 PKPQLSRRYSAGNMMS 288
             PKP+ ++R S  ++ S
Sbjct:   222 PKPEFTKRPSQSSLPS 237

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0006970 "response to osmotic stress" evidence=IEP

GO:0009409 "response to cold" evidence=IEP

GO:0009651 "response to salt stress" evidence=IMP

GO:0034605 "cellular response to heat" evidence=IMP

GO:0070370 "cellular heat acclimation" evidence=IMP

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009625 "response to insect" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0010286 "heat acclimation" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0046777 "protein autophosphorylation" evidence=RCA

TAIR|locus:2057212 WRKY33 "AT2G38470" [Arabidopsis thaliana (taxid:3702)]

 Score = 287 (106.1 bits), Expect = 7.5e-27, Sum P(2) = 7.5e-27
 Identities = 51/76 (67%), Positives = 59/76 (77%)

Query:   210 GGPSMPSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEIIYKGT 269
             G      +DGYNWRKYGQK VKGSE PRSYYKCT PNC  KK  ERS +GQITEI+YKG+
Sbjct:   177 GREQRKGEDGYNWRKYGQKQVKGSENPRSYYKCTFPNCPTKKKVERSLEGQITEIVYKGS 236

Query:   270 HDHPKPQLSRRYSAGN 285
             H+HPKPQ +RR S+ +
Sbjct:   237 HNHPKPQSTRRSSSSS 252

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0042742 "defense response to bacterium" evidence=RCA;IMP

GO:0050832 "defense response to fungus" evidence=RCA;IMP

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0010120 "camalexin biosynthetic process" evidence=IMP

GO:0006970 "response to osmotic stress" evidence=IEP

GO:0009408 "response to heat" evidence=IEP

GO:0009409 "response to cold" evidence=IEP

GO:0009414 "response to water deprivation" evidence=IEP

GO:0009651 "response to salt stress" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0034605 "cellular response to heat" evidence=IMP

GO:0070370 "cellular heat acclimation" evidence=IMP

GO:0010508 "positive regulation of autophagy" evidence=IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

TAIR|locus:2049852 TTG2 "TRANSPARENT TESTA GLABRA 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 266 (98.7 bits), Expect = 1.3e-25, Sum P(2) = 1.3e-25
 Identities = 51/86 (59%), Positives = 61/86 (70%)

Query:   216 SDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEIIYKGTHDHPKP 275
             S DGYNWRKYGQK VKGSE PRSYYKCTHP C VKK  ERS +GQ++EI+Y+G H+H KP
Sbjct:   164 SVDGYNWRKYGQKQVKGSECPRSYYKCTHPKCPVKKKVERSVEGQVSEIVYQGEHNHSKP 223

Query:   276 Q--LSRRYSAGNMMSIQEERPDKVSS 299
                L RR S+      Q+  P  ++S
Sbjct:   224 SCPLPRRASSSISSGFQKP-PKSIAS 248

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0010214 "seed coat development" evidence=IMP

GO:0009957 "epidermal cell fate specification" evidence=RCA;IMP

GO:0001708 "cell fate specification" evidence=RCA

TAIR|locus:2102147 WRKY58 "WRKY DNA-binding protein 58" [Arabidopsis thaliana (taxid:3702)]

 Score = 288 (106.4 bits), Expect = 2.2e-25, P = 2.2e-25
 Identities = 51/70 (72%), Positives = 57/70 (81%)

Query:   215 PSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEIIYKGTHDHPK 274
             P+DDGYNWRKYGQK +KG E+PRSYYKCTH NC VKK  ERS DGQIT+IIYKG HDH +
Sbjct:   165 PADDGYNWRKYGQKPIKGCEYPRSYYKCTHVNCPVKKKVERSSDGQITQIIYKGQHDHER 224

Query:   275 PQLSRRYSAG 284
             PQ +RR   G
Sbjct:   225 PQ-NRRGGGG 233

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IMP

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0031347 "regulation of defense response" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	324
pfam03106	60	pfam03106, WRKY, WRKY DNA -binding domain	1e-36
smart00774	59	smart00774, WRKY, DNA binding domain	5e-31

>gnl|CDD|145969 pfam03106, WRKY, WRKY DNA -binding domain

 Score =  125 bits (317), Expect = 1e-36
 Identities = 43/60 (71%), Positives = 46/60 (76%), Gaps = 1/60 (1%)

Query: 216 SDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSH-DGQITEIIYKGTHDHPK 274
            DDGYNWRKYGQK VKGS FPRSYY+CT P C VKK  ERS  D QI EI Y+G H+HPK
Sbjct: 1   LDDGYNWRKYGQKPVKGSPFPRSYYRCTSPGCPVKKQVERSSDDPQIVEITYEGEHNHPK 60

Length = 60

>gnl|CDD|214815 smart00774, WRKY, DNA binding domain

 Score =  111 bits (279), Expect = 5e-31
 Identities = 32/58 (55%), Positives = 40/58 (68%), Gaps = 2/58 (3%)

Query: 217 DDGYNWRKYGQKHVKGSEFPRSYYKCTH-PNCEVKKLFERS-HDGQITEIIYKGTHDH 272
           DDGY WRKYGQK +KGS +PRSYY+CT+   C  KK  +RS  D  + E+ Y+G H H
Sbjct: 2   DDGYQWRKYGQKVIKGSPYPRSYYRCTYTQGCPAKKQVQRSDDDPSVVEVTYEGEHTH 59

The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding. Length = 59

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	324
PF03106	60	WRKY: WRKY DNA -binding domain; InterPro: IPR00365	99.96
smart00774	59	WRKY DNA binding domain. The WRKY domain is a DNA	99.95
PF04500	62	FLYWCH: FLYWCH zinc finger domain; InterPro: IPR00	92.07
PF03101	91	FAR1: FAR1 DNA-binding domain; InterPro: IPR004330	88.57

>PF03106 WRKY: WRKY DNA -binding domain; InterPro: IPR003657 The WRKY domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger- like motif

Probab=99.96  E-value=1.1e-30  Score=197.27  Aligned_cols=59  Identities=61%  Similarity=1.230  Sum_probs=50.8

Q ss_pred             CCCCccccccCCccCCCCCCCCccccccccccccccceeecC-CCCEEEEEEccccCCCC
Q 020585          216 SDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSH-DGQITEIIYKGTHDHPK  274 (324)
Q Consensus       216 ~~DGY~WRKYGQK~IkGs~~pRsYYrCt~~~C~akK~Vqrs~-Dg~i~~i~Y~G~HnH~~  274 (324)
                      ++|||+|||||||.|+|+++||+||||++.+|+|+|+|||+. |+.+++|+|+|+|||++
T Consensus         1 ~~Dgy~WRKYGqK~i~g~~~pRsYYrCt~~~C~akK~Vqr~~~d~~~~~vtY~G~H~h~k   60 (60)
T PF03106_consen    1 LDDGYRWRKYGQKNIKGSPYPRSYYRCTHPGCPAKKQVQRSADDPNIVIVTYEGEHNHPK   60 (60)
T ss_dssp             --SSS-EEEEEEEEETTTTCEEEEEEEECTTEEEEEEEEEETTCCCEEEEEEES--SS--
T ss_pred             CCCCCchhhccCcccCCCceeeEeeeccccChhheeeEEEecCCCCEEEEEEeeeeCCCC
Confidence            489999999999999999999999999999999999999997 77899999999999985

The WRKY domain is found in one or two copies in a superfamily of plant transcription factors involved in the regulation of various physiological programs that are unique to plants, including pathogen defence, senescence, trichome development and the biosynthesis of secondary metabolites. The WRKY domain binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core of the W box is essential for function and WRKY binding []. Some proteins known to contain a WRKY domain include Arabidopsis thaliana ZAP1 (Zinc-dependent Activator Protein-1) and AtWRKY44/TTG2, a protein involved in trichome development and anthocyanin pigmentation; and wild oat ABF1-2, two proteins involved in the gibberelic acid-induced expression of the alpha-Amy2 gene. Structural studies indicate that this domain is a four-stranded beta-sheet with a zinc binding pocket, forming a novel zinc and DNA binding structure []. The WRKYGQK residues correspond to the most N-terminal beta-strand, which enables extensive hydrophobic interactions, contributing to the structural stability of the beta-sheet.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2AYD_A 1WJ2_A 2LEX_A.

>smart00774 WRKY DNA binding domain

Probab=99.95  E-value=2.3e-29  Score=189.98  Aligned_cols=57  Identities=58%  Similarity=1.134  Sum_probs=54.9

Q ss_pred             CCCCccccccCCccCCCCCCCCccccccc-cccccccceeecC-CCCEEEEEEccccCC
Q 020585          216 SDDGYNWRKYGQKHVKGSEFPRSYYKCTH-PNCEVKKLFERSH-DGQITEIIYKGTHDH  272 (324)
Q Consensus       216 ~~DGY~WRKYGQK~IkGs~~pRsYYrCt~-~~C~akK~Vqrs~-Dg~i~~i~Y~G~HnH  272 (324)
                      .+|||.|||||||.|+|+++||+||||++ ++|+|+|+|||+. |+.+++|+|+|+|||
T Consensus         1 ~~DGy~WRKYGQK~ikgs~~pRsYYrCt~~~~C~a~K~Vq~~~~d~~~~~vtY~g~H~h   59 (59)
T smart00774        1 LDDGYQWRKYGQKVIKGSPFPRSYYRCTYSQGCPAKKQVQRSDDDPSVVEVTYEGEHTH   59 (59)
T ss_pred             CCCcccccccCcEecCCCcCcceEEeccccCCCCCcccEEEECCCCCEEEEEEeeEeCC
Confidence            47999999999999999999999999999 8999999999996 789999999999998

The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding.

>PF04500 FLYWCH: FLYWCH zinc finger domain; InterPro: IPR007588 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=92.07  E-value=0.072  Score=38.09  Aligned_cols=50  Identities=22%  Similarity=0.556  Sum_probs=25.8

Q ss_pred             CCCCCCccccccCCccCCCCCCCCcccccccc---ccccccceeecCCCCEEEEEEccccCC
Q 020585          214 MPSDDGYNWRKYGQKHVKGSEFPRSYYKCTHP---NCEVKKLFERSHDGQITEIIYKGTHDH  272 (324)
Q Consensus       214 ~~~~DGY~WRKYGQK~IkGs~~pRsYYrCt~~---~C~akK~Vqrs~Dg~i~~i~Y~G~HnH  272 (324)
                      .+.-|||.-+++..+      ..+.|++|+..   +|.|+=.+. ..++.  .+...++|||
T Consensus        10 ~L~~~Gy~y~~~~~~------~~~~~WrC~~~~~~~C~a~~~~~-~~~~~--~~~~~~~HnH   62 (62)
T PF04500_consen   10 KLVYDGYRYYFNKRN------DGKTYWRCSRRRSHGCRARLITD-AGDGR--VVRTNGEHNH   62 (62)
T ss_dssp             EEEETTEEEEEEEE-------SS-EEEEEGGGTTS----EEEEE---TTE--EEE-S---SS
T ss_pred             EEEECCeEEECcCCC------CCcEEEEeCCCCCCCCeEEEEEE-CCCCE--EEECCCccCC
Confidence            456788887765544      45689999985   899977665 22333  3455699999

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a potential FLYWCH Zn-finger domain found in a number of eukaryotic proteins. FLYWCH is a C2H2-type zinc finger characterised by five conserved hydrophobic residues, containing the conserved sequence motif: F/Y-X(n)-L-X(n)-F/Y-X(n)-WXCX(6-12)CX(17-22)HXH where X indicates any amino acid. This domain was first characterised in Drosophila Modifier of mdg4 proteins, Mod(mgd4), putative chromatin modulators involved in higher order chromatin domains. Mod(mdg4) proteins share a common N-terminal BTB/POZ domain, but differ in their C-terminal region, most containing C-terminal FLYWCH zinc finger motifs []. The FLYWCH domain in Mod(mdg4) proteins has a putative role in protein-protein interactions; for example, Mod(mdg4)-67.2 interacts with DNA-binding protein Su(Hw) via its FLYWCH domain. FLYWCH domains have been described in other proteins as well, including suppressor of killer of prune, Su(Kpn), which contains 4 terminal FLYWCH zinc finger motifs in a tandem array and a C-terminal glutathione SH-transferase (GST) domain []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2RPR_A.

>PF03101 FAR1: FAR1 DNA-binding domain; InterPro: IPR004330 Phytochrome A is the primary photoreceptor for mediating various far-red light-induced responses in higher plants

Probab=88.57  E-value=0.31  Score=37.88  Aligned_cols=29  Identities=24%  Similarity=0.487  Sum_probs=24.4

Q ss_pred             ccccccceeecCCCCEEEEEEccccCCCC
Q 020585          246 NCEVKKLFERSHDGQITEIIYKGTHDHPK  274 (324)
Q Consensus       246 ~C~akK~Vqrs~Dg~i~~i~Y~G~HnH~~  274 (324)
                      +|+|+=.+-+..+|....+.+..+|||+.
T Consensus        61 gC~a~i~v~~~~~~~w~v~~~~~~HNH~L   89 (91)
T PF03101_consen   61 GCKARINVKRRKDGKWRVTSFVLEHNHPL   89 (91)
T ss_pred             CCCEEEEEEEccCCEEEEEECcCCcCCCC
Confidence            79998888777677777779999999985

It has been found that the proteins governing this response, which include FAR-RED ELONGATED HYPOCOTYL3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1), are a pair of homologous proteins sharing significant sequence homology to mutator-like transposases. These proteins appear to be novel transcription factors, which are essential for activating the expression of FHY1 and FHL (for FHY1-like) and related genes, whose products are required for light-induced phytochrome A nuclear accumulation and subsequent light responses in plants. The FRS (FAR1 Related Sequences) family of proteins share a similar domain structure to mutator-like transposases, including an N-terminal C2H2 zinc finger domain, a central putative core transposase domain, and a C-terminal SWIM motif (named after SWI2/SNF and MuDR transposases). It seems plausible that the FRS family represent transcription factors derived from mutator-like transposases [, ]. This entry represents a domain found in FAR1 and FRS proteins. It contains a WRKY like fold and is therefore most likely a zinc binding DNA-binding domain.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	324
2ayd_A	76	Crystal Structure Of The C-Terminal Wrky Domainof A		1e-14
1wj2_A	78	Solution Structure Of The C-Terminal Wrky Domain Of		4e-13

>pdb|2AYD|A Chain A, Crystal Structure Of The C-Terminal Wrky Domainof Atwrky1, An Sa-Induced And Partially Npr1-Dependent Transcription Factor Length = 76

Iteration: 1
 Score = 77.0 bits (188), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 36/60 (60%), Positives = 43/60 (71%), Gaps = 1/60 (1%)
Query: 217 DDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFER-SHDGQITEIIYKGTHDHPKP 275
           +DGY WRKYGQK VKGS +PRSYY+C+ P C VKK  ER SHD ++    Y+G HDH  P
Sbjct: 15  NDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMP 74

>pdb|1WJ2|A Chain A, Solution Structure Of The C-Terminal Wrky Domain Of Atwrky4 Length = 78

Iteration: 1
 Score = 72.0 bits (175), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 34/60 (56%), Positives = 41/60 (68%), Gaps = 1/60 (1%)
Query: 217 DDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSH-DGQITEIIYKGTHDHPKP 275
           DDGY WRKYGQK VKG+ +PRSYYKCT P C V+K  ER+  D +     Y+G H+H  P
Sbjct: 18  DDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLP 77

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	324
2ayd_A	76	WRKY transcription factor 1; beta strands, zinc fi	2e-27
1wj2_A	78	Probable WRKY transcription factor 4; DNA-binding	3e-27

>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana} Length = 76

 Score =  100 bits (252), Expect = 2e-27
 Identities = 36/60 (60%), Positives = 43/60 (71%), Gaps = 1/60 (1%)

Query: 217 DDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERS-HDGQITEIIYKGTHDHPKP 275
           +DGY WRKYGQK VKGS +PRSYY+C+ P C VKK  ERS HD ++    Y+G HDH  P
Sbjct: 15  NDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMP 74

>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A* Length = 78

 Score =  101 bits (253), Expect = 3e-27
 Identities = 34/60 (56%), Positives = 41/60 (68%), Gaps = 1/60 (1%)

Query: 217 DDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERS-HDGQITEIIYKGTHDHPKP 275
           DDGY WRKYGQK VKG+ +PRSYYKCT P C V+K  ER+  D +     Y+G H+H  P
Sbjct: 18  DDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLP 77

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	324
2ayd_A	76	WRKY transcription factor 1; beta strands, zinc fi	99.96
1wj2_A	78	Probable WRKY transcription factor 4; DNA-binding	99.96

>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}

Probab=99.96  E-value=4.3e-31  Score=207.12  Aligned_cols=65  Identities=54%  Similarity=1.001  Sum_probs=60.9

Q ss_pred             CCCCCCCCccccccCCccCCCCCCCCccccccccccccccceeecC-CCCEEEEEEccccCCCCCC
Q 020585          212 PSMPSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSH-DGQITEIIYKGTHDHPKPQ  276 (324)
Q Consensus       212 ~~~~~~DGY~WRKYGQK~IkGs~~pRsYYrCt~~~C~akK~Vqrs~-Dg~i~~i~Y~G~HnH~~P~  276 (324)
                      ...+++|||+|||||||.|||++|||+||||++.+|+|+|+|||+. |+.+++|+|+|+|||+.|.
T Consensus        10 ~~~~~~DGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~   75 (76)
T 2ayd_A           10 LFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMPP   75 (76)
T ss_dssp             SSSCCCCSSCEEEEEEECCTTCSSCEEEEEECSTTCCCEEEEEECSSSTTEEEEEEESCCSSCCCC
T ss_pred             CCCcCCCCchhhhCcccccCCCCCceeEeEcCCCCCCceeeEEEECCCCCEEEEEEccCcCCCCCC
Confidence            3457899999999999999999999999999999999999999986 6789999999999999986

>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*

Probab=99.96  E-value=6.3e-31  Score=207.04  Aligned_cols=65  Identities=52%  Similarity=0.980  Sum_probs=60.5

Q ss_pred             CCCCCCCCccccccCCccCCCCCCCCccccccccccccccceeecC-CCCEEEEEEccccCCCCCC
Q 020585          212 PSMPSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSH-DGQITEIIYKGTHDHPKPQ  276 (324)
Q Consensus       212 ~~~~~~DGY~WRKYGQK~IkGs~~pRsYYrCt~~~C~akK~Vqrs~-Dg~i~~i~Y~G~HnH~~P~  276 (324)
                      ...+++|||+|||||||.|||++|||+||||++++|+|+|+|||+. |+.+++|+|+|+|||+.|.
T Consensus        13 ~~~~~dDGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~   78 (78)
T 1wj2_A           13 EVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA   78 (78)
T ss_dssp             CCCCCCSSSCBCCCEEECCTTCSSCEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred             CCCcCCCCchhhhCcccccCCCcCeeEEeecCcCCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCCC
Confidence            3457899999999999999999999999999999999999999985 7789999999999999884

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	324
d1wj2a_	71	g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cr	4e-27

>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 71

class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 99.5 bits (248), Expect = 4e-27
 Identities = 34/62 (54%), Positives = 41/62 (66%), Gaps = 1/62 (1%)

Query: 215 PSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERS-HDGQITEIIYKGTHDHP 273
             DDGY WRKYGQK VKG+ +PRSYYKCT P C V+K  ER+  D +     Y+G H+H 
Sbjct: 9   LLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHD 68

Query: 274 KP 275
            P
Sbjct: 69  LP 70

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	324
d1wj2a_	71	WRKY DNA-binding protein 4 {Thale cress (Arabidops	99.97

>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.97  E-value=1.1e-31  Score=206.17  Aligned_cols=65  Identities=52%  Similarity=0.980  Sum_probs=60.6

Q ss_pred             CCCCCCCCccccccCCccCCCCCCCCccccccccccccccceeecC-CCCEEEEEEccccCCCCCC
Q 020585          212 PSMPSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSH-DGQITEIIYKGTHDHPKPQ  276 (324)
Q Consensus       212 ~~~~~~DGY~WRKYGQK~IkGs~~pRsYYrCt~~~C~akK~Vqrs~-Dg~i~~i~Y~G~HnH~~P~  276 (324)
                      ....++|||+|||||||.|+|+++||+||||++++|+|+|+|||+. |+.+++|+|+|+|||+.|.
T Consensus         6 ~~~~~dDGy~WRKYGQK~ikgs~~pRsYYrCt~~~C~a~K~Vqr~~~d~~~~~vtY~G~H~h~~Ps   71 (71)
T d1wj2a_           6 EVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA   71 (71)
T ss_dssp             CCCCCCSSSCBCCCEEECCTTCSSCEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred             ccccCCCCcEecccCceeccCCCCceEEEEccccCCCCcceEEEEcCCCCEEEEEEeeEeCCCCCC
Confidence            3456899999999999999999999999999999999999999986 6799999999999999884