Citrus Sinensis ID: 020586

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320----
Protein Sequence
MFLMGMSPSSGVDILDVQRCSSASLLARFELFQKQLEITNKCRGDANVRYAWLATSKGALSTMIMYGLGHCGASTTKSTYGIGVHLAAASCPDTSASYTDVDENGVRHMVLCRVIMGNMEPLFPGTKQFHPSSEDFDSGVDDLQNPRHYIVWNMNMNTHIFPEFVVSFKFSSNVEGHLIRSESQRAISVLTTSSQGLQGHLRLDSSADFGDVSHPVSDSGGSQGKAPSTSSSTPRAPKSPWMPFPMLFASISNKVSPKVMEQISNQYELFRAKKVNRDDFVKKLRLIVGDDLLRSTITALQCKHGLRCSVAWTSLQTTVQHLHR
Secondary Structure (PSIPRED)
ccccccccccccEEEEEEEEccHHHHHHHHHHHHHHHHHHccccccccEEEEcccccccHHHHHHHccccccccccccccccEEEEccccccccccccccccccccEEEEEEEEEEcccccccccccccccccccccccccccccccEEEEEEcccccccccEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccccccccEEEEEEEcccHHHHHHHHHHHHHHHHHccccccccEEEEEccccHHHHHHHHHcccccccccccccccccEEEEccccccccccccccccccccEEEEEEEEEEcccccccccccccccccccccccccccccccEEEEEccccccccccEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mflmgmspssgvdildvqrcsSASLLARFELFQKQLEITNKCRGDANVRYAWLATSKGALSTMIMYGlghcgasttkstygIGVHLaaascpdtsasytdvdengvRHMVLCRVImgnmeplfpgtkqfhpssedfdsgvddlqnprhYIVWNMNMNTHIFPEFVVSFKfssnveghlirsESQRAISVLTtssqglqghlrldssadfgdvshpvsdsggsqgkapstssstprapkspwmpfpmlfASISNKVSPKVMEQISNQYELFRAKKVNRDDFVKKLRLIVGDDLLRSTITALQCKHGLRCSVAWTSLQTTVQHLHR
Flexible Loop (DISEMBL)
MFLMGMSPSSGVDILDVQRCSSASLLARFELFQKQLEITNKCRGDANVRYAWLATSKGALSTMIMYGLGHCGASTTKSTYGIGVHLAAASCPDTsasytdvdenGVRHMVLCRVIMGNMEPLFPGTKQFHPSSEDFDSGVDDLQNPRHYIVWNMNMNTHIFPEFVVSFKFSSNVEGHLIRSESQRAISVLTTSSQGLQGHLRLDSSADFGDVSHPvsdsggsqgkapstssstprapkspWMPFPMLFASISNKVSPKVMEQISNQYELfrakkvnrddfVKKLRlivgddllrSTITALQCKHGLRCSVAWTSLQttvqhlhr
Low Complexity Region (SEG)
MFLMGMSPSSGVDILDVQRCSSASLLARFELFQKQLEITNKCRGDANVRYAWLATSKGALSTMIMYGLGHCGASTTKSTYGIGVHLAAASCPDTSASYTDVDENGVRHMVLCRVIMGNMEPLFPGTKQFHPSSEDFDSGVDDLQNPRHYIVWNMNMNTHIFPEFVVSFKFSSNVEGHLIRSESQRAISVLTTSSQGLQGHLRLDSSADFGDVSHPVSDSGGSQGkapstssstprapkspWMPFPMLFASISNKVSPKVMEQISNQYELFRAKKVNRDDFVKKLRLIVGDDLLRSTITALQCKHGLRCSVAWTSLQTTVQHLHR
Disordered region (IsUnstruct)
***********VDILDVQRCSSASLLARFELFQKQLEITNKCRGDANVRYAWLATSKGALSTMIMYGLGHCGASTTKSTYGIGVHLAAASCPDTSASYTDVDENGVRHMVLCRVIMGNMEPLFP******************LQNPRHYIVWNMNMNTHIFPEFVVSFKFSSNVEGHLIR**************************************************************PFPMLFASISNKVSPKVMEQISNQYELFRAKKVNRDDFVKKLRLIVGDDLLRSTITALQCKHGLRCSVAWTSLQTTV*****
Disordered Region (DISOPRED)
MFL*****SSGVDILDVQRCSSASLLARFELF***************VRYAWLATSKGALSTMIMYGLGHCGASTTKSTYGIGVHLAAASCPDTSASYTDVDENGVRHMVLCRVIMGNM***************DFDSGVDDLQNPRHYIVWNMNMNTHIFPEFVVSFKFSSNVEGHLI******************************************************************MLFASISNKVSPKVMEQISNQYELFRAKKVNRDDFVKKLRLIVGDDLLRSTITA*************************
Disordered Region (DISEMBL)
*********SGVDILDVQRCSSASLLARFELFQKQLEITNKCRGDANVRYAWLATSKGALSTMIMYGLGHCGASTTKSTYGIGVHLAAASCPDTSASYTDVDENGVRHMVLCRVIMGNMEPLFPGTKQFHPSSEDFDSGVDDLQNPRHYIVWNMNMNTHIFPEFVVSFKFSSNVEGHLIRSESQRAISVLTTSSQGLQGHLRLDSSADFGDVS************************KSPWMPFPMLFASISNKVSPKVMEQISNQYELFRAKKVNRDDFVKKLRLIVGDDLLRSTITALQCKHGLRCSVAWTSLQ********
Disordered Region (DISPRO)
*FLMGMSPSSGVDILDVQRCSSASLLARFELFQKQLEITNKCRGDANVRYAWLATSKGALSTMIMYGLGHCGASTTKSTYGIGVHLAAASCPDTSASYTDVDENGVRHMVLCRVIMGNMEPLFPGT*****SSEDFDSGVDDLQNPRHYIVWNMNMNTHIFPEFVVSFKFSSNVEGHLIR*********************************************************KSPWMPFPMLFASISNKVSPKVMEQISNQYELFRAKKVNRDDFVKKLRLIVGDDLLRSTITALQCKHGLRCSVAWTSLQTTVQHLHR
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFLMGMSPSSGVDILDVQRCSSASLLARFELFQKQLEITNKCRGDANVRYAWLATSKGALSTMIMYGLGHCGASTTKSTYGIGVHLAAASCPDTSASYTDVDENGVRHMVLCRVIMGNMEPLFPGTKQFHPSSEDFDSGVDDLQNPRHYIVWNMNMNTHIFPEFVVSFKFSSNVEGHLIRSESQRAISVLTTSSQGLQGHLRLDSSADFGDVSHPVSDSGGSQGKAPSTSSSTPRAPKSPWMPFPMLFASISNKVSPKVMEQISNQYELFRAKKVNRDDFVKKLRLIVGDDLLRSTITALQCKHGLRCSVAWTSLQTTVQHLHR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	324	2.2.26 [Sep-21-2011]
Q8RY59	589	Inactive poly [ADP-ribose	yes	no	0.876	0.482	0.536	5e-81
O82289	568	Probable inactive poly [A	no	no	0.879	0.501	0.493	6e-69
Q9ZUD9	323	Probable inactive poly [A	no	no	0.675	0.678	0.338	4e-38
O64592	305	Probable inactive poly [A	no	no	0.725	0.770	0.31	1e-34
Q9FJJ3	309	Probable inactive poly [A	no	no	0.697	0.731	0.285	2e-28
Q9STU1	316	Probable inactive poly [A	no	no	0.351	0.360	0.354	4e-15
Q460N3	656	Poly [ADP-ribose] polymer	yes	no	0.462	0.228	0.225	2e-08
Q2EMV9	1817	Poly [ADP-ribose] polymer	yes	no	0.462	0.082	0.216	1e-07
Q54YW4	337	Probable poly [ADP-ribose	yes	no	0.453	0.436	0.226	0.0003
Q460N5	1801	Poly [ADP-ribose] polymer	no	no	0.466	0.083	0.192	0.0005

>sp|Q8RY59|RCD1_ARATH Inactive poly [ADP-ribose] polymerase RCD1 OS=Arabidopsis thaliana GN=RCD1 PE=1 SV=1

 Score =  301 bits (771), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 163/304 (53%), Positives = 198/304 (65%), Gaps = 20/304 (6%)

Query: 1   MFLMGMSPSSGVDILDVQRCSSASLLARFELFQKQLEITNKCRGDANVRYAWLATSKGAL 60
           MF +G +    V +LDV R SS    AR  LFQKQ+EIT K RGDANVRYAWL   +  L
Sbjct: 281 MFAVGTASLGHVPVLDVGRFSSEIAEARLALFQKQVEITKKHRGDANVRYAWLPAKREVL 340

Query: 61  STMIMYGLGHCGASTTKSTYGIGVHLAAASCPDTSASYTDVDENGVRHMVLCRVIMGNME 120
           S ++M GLG  GA   KS YG+G+HL AA CP  SA Y DVDENGVR+MVLCRVIMGNME
Sbjct: 341 SAVMMQGLGVGGAFIRKSIYGVGIHLTAADCPYFSARYCDVDENGVRYMVLCRVIMGNME 400

Query: 121 PLFPGTKQFHPSSEDFDSGVDDLQNPRHYIVWNMNMNTHIFPEFVVSFKFSS--NVEGHL 178
            L     QF    E++D+GVDD+++P++YIVWN+NMNTHIFPEFVV FK S+  N EG+L
Sbjct: 401 LLRGDKAQFFSGGEEYDNGVDDIESPKNYIVWNINMNTHIFPEFVVRFKLSNLPNAEGNL 460

Query: 179 IRSESQRAISVLTTSSQGLQGHLRLDSSADFGDVSHPVSDSGG-SQGKAPSTSSSTPRAP 237
           I       ++        L+G   L    +        S+ G    G A S  SST R P
Sbjct: 461 IAKRDNSGVT--------LEGPKDLPPQLE--------SNQGARGSGSANSVGSSTTR-P 503

Query: 238 KSPWMPFPMLFASISNKVSPKVMEQISNQYELFRAKKVNRDDFVKKLRLIVGDDLLRSTI 297
           KSPWMPFP LFA+IS+KV+   M  I+  Y+  R KK+ R +FV+KLR+IVGDDLLRSTI
Sbjct: 504 KSPWMPFPTLFAAISHKVAENDMLLINADYQQLRDKKMTRAEFVRKLRVIVGDDLLRSTI 563

Query: 298 TALQ 301
           T LQ
Sbjct: 564 TTLQ 567

Inactive ADP-ribosyltransferase that functions with SRO1 to regulates oxidative stress, hormonal and developmental responses. Required for embryogenesis, vegetative and reproductive development, and abiotic stress responses. May regulates several stress-responsive genes. Seems to have has a larger developmental role than SRO1. Does not bind NAD in vitro.
Arabidopsis thaliana (taxid: 3702)

>sp|O82289|SRO1_ARATH Probable inactive poly [ADP-ribose] polymerase SRO1 OS=Arabidopsis thaliana GN=SRO1 PE=1 SV=2

 Score =  261 bits (666), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 150/304 (49%), Positives = 197/304 (64%), Gaps = 19/304 (6%)

Query: 1   MFLMGMSPSSGVDILDVQRCSSASLLARFELFQKQLEITNKCRGDANVRYAWLATSKGAL 60
           MF +G +    V+ LDV + SS    AR  LFQKQ +IT K RGDAN+RYAW+   K  L
Sbjct: 277 MFALGAATLGHVESLDVYQFSSEIAKARLSLFQKQADITKKHRGDANIRYAWVPAKKEVL 336

Query: 61  STMIMYGLGHCGASTTKSTYGIGVHLAAASCPDTSASYTDVDENGVRHMVLCRVIMGNME 120
           S ++M+GLG  GA   KS YG+GVH  AA+CP  SA Y D+D+NGVRHMVLCRVIMGNME
Sbjct: 337 SAVMMHGLGVGGAFIKKSMYGVGVH--AANCPYFSARYCDIDDNGVRHMVLCRVIMGNME 394

Query: 121 PLFPGTKQFHPSSEDFDSGVDDLQNPRHYIVWNMNMNTHIFPEFVVSFKFS-SNVEGHLI 179
           PL     Q+    E++D+GVDD+++P+HY++WNMNMNTHI+PEFVVSFK S  N EG+++
Sbjct: 395 PLRGDNTQYFTGGEEYDNGVDDVESPKHYLIWNMNMNTHIYPEFVVSFKLSIPNAEGNIL 454

Query: 180 -RSESQRAISVLTTSSQGLQGHLRLDSSADFGDVSHPVSDSGGSQGKAPSTSSSTPRAPK 238
             ++S+   S LT   +G +G      S + G VS+  S S  +   +    S       
Sbjct: 455 PTTQSRHESSGLTL--EGPKG----SPSNEPGRVSNGGSGSEKNSSSSRRPRSPI----- 503

Query: 239 SPWMPFPMLFASISNKVSPKVMEQISNQYELFRAKKVNRDDFVKKLRLIVG-DDLLRSTI 297
              MPFP+LF +IS+K++ K M+ I   Y+  R KKV+R +F K L +IVG DDLL STI
Sbjct: 504 ---MPFPLLFKAISSKIARKDMDLIIAGYQELREKKVSRKEFYKTLSMIVGDDDLLISTI 560

Query: 298 TALQ 301
           T LQ
Sbjct: 561 TGLQ 564

Probable inactive ADP-ribosyltransferase that functions with RCD1 to regulates oxidative stress, hormonal and developmental responses. May regulates some stress-responsive genes. Seems to have has a smaller developmental role than R.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZUD9|SRO2_ARATH Probable inactive poly [ADP-ribose] polymerase SRO2 OS=Arabidopsis thaliana GN=SRO2 PE=1 SV=1

 Score =  159 bits (401), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 94/278 (33%), Positives = 139/278 (50%), Gaps = 59/278 (21%)

Query: 23  ASLLARFELFQKQLEITNKCRGDANVRYAWLATSKGALSTMIMYGLGHCGASTTKS---T 79
           A  LA F +F     +  K  GDANV+Y W A S+  +  +I YG  +      ++   +
Sbjct: 91  AKFLA-FRIFTDA--VARKHGGDANVKYGWYAGSRDEIQRIISYGFSNRDVGKFENDGGS 147

Query: 80  YGIGVHLAAASCPDTSASYTDVDENGVRHMVLCRVIMGNMEPLFPGTKQFHPSSEDFDSG 139
           +GIG+HL  + C   +AS T+ DE G+R+++LCRVI+G  E +  G+KQ +PSS +FDSG
Sbjct: 148 HGIGIHLVPSKCSLLAASATEQDEEGLRYLLLCRVILGKPEIIISGSKQSYPSSAEFDSG 207

Query: 140 VDDLQNPRHYIVWNMNMNTHIFPEFVVSFKFSSNVEGHLIRSESQRAISVLTTSSQGLQG 199
           VDDL NPR+Y++W+ NMN+ I P ++VSF+                              
Sbjct: 208 VDDLHNPRNYVIWSCNMNSCILPSYIVSFR----------------------------SP 239

Query: 200 HLRLDSSADFGDVSHPVSDSGGSQGKAPSTSSSTPRAPKSPWMPFPMLFASISNKVSPKV 259
            LR+                  S+G   S  SS       PW+ F  L + +S  + P  
Sbjct: 240 RLRV------------------SRGGFASRPSS-------PWVSFASLMSMLSTSMDPSR 274

Query: 260 MEQISNQYELFRAKKVNRDDFVKKLRLIVGDDLLRSTI 297
           M  I   Y+ FR +K+ RD  V+K+R + GD+LL   I
Sbjct: 275 MNLIIRTYDDFRKRKIRRDQLVRKMREVAGDNLLAEII 312

Probable inactive ADP-ribosyltransferase that may be involved in stress and developmental responses.

Arabidopsis thaliana (taxid: 3702)

>sp|O64592|SRO3_ARATH Probable inactive poly [ADP-ribose] polymerase SRO3 OS=Arabidopsis thaliana GN=SRO3 PE=1 SV=2

 Score =  147 bits (371), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 93/300 (31%), Positives = 149/300 (49%), Gaps = 65/300 (21%)

Query: 2   FLMGM-SPSSGVDILDVQRCSSASLL---ARFELFQKQLE-ITNKCRGDANVRYAWLATS 56
           FL GM S ++   I+ V++  +  L+   A+F +F+   E +  K  G AN+RY W + S
Sbjct: 54  FLSGMGSFATETTIVTVRKILTQRLITTKAKFAVFKLFTEAMKRKNNGYANIRYGWYSGS 113

Query: 57  KGALSTMIMYGLGHCGASTTKS---TYGIGVHLAAASCPDTSASYTDVDENGVRHMVLCR 113
           K  +  +I YG  +      ++   ++G+G+HL        +A   + DE G+++++LCR
Sbjct: 114 KEEIDRVITYGFSNREIKKVENDVGSHGVGIHLVHHRYSLAAALVGEGDEEGIKNILLCR 173

Query: 114 VIMGNMEPLFPGTKQFHPSSEDFDSGVDDLQNPRHYIVWNMNMNTHIFPEFVVSFKFSSN 173
           VI+G  E +  G+KQ +PSS  FDSGVD+L+NPR Y++W+ NMN++I P ++VSFK    
Sbjct: 174 VILGKPEQIVTGSKQSYPSSNQFDSGVDNLENPRKYVIWSCNMNSYILPTYIVSFK---- 229

Query: 174 VEGHLIRSESQRAISVLTTSSQGLQGHLRLDSSADFGDVSHPVSDSGGSQGKAPSTSSST 233
              HL+R               GL G  R                               
Sbjct: 230 --SHLLR---------------GLIGRAR------------------------------- 241

Query: 234 PRAPKSPWMPFPMLFASISNKVSPKVMEQISNQYELFRAKKVNRDDFVKKLRLIVGDDLL 293
                SP + F +L + +S  +    M  I   Y+ FR +K+ R+  V+K+R +VGD+LL
Sbjct: 242 -----SPCVSFSVLMSILSKSLDAARMNLILTSYDDFRKRKLRREQLVRKIREVVGDNLL 296

Probable inactive ADP-ribosyltransferase that may be involved in stress and developmental responses.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FJJ3|SRO5_ARATH Probable inactive poly [ADP-ribose] polymerase SRO5 OS=Arabidopsis thaliana GN=SRO5 PE=1 SV=1

 Score =  126 bits (317), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 82/287 (28%), Positives = 134/287 (46%), Gaps = 61/287 (21%)

Query: 22  SASLLARFELFQKQLEITNKCRGDANVRYAWLATSKGALSTMIMYGLGHCGASTTKSTYG 81
           S + L  F++FQ+ +++ +   G A V+Y W + SK  L T+  YG           ++G
Sbjct: 82  SRAKLKTFQVFQEAVQMKHGGDGGAKVKYGWCSVSKHELKTIFEYGFSE--PLRNDGSFG 139

Query: 82  IGVHLAAASCP-DTSASYTDVDENGVRHMVLCRVIMGNMEPLFPGTKQFHPSSEDFDSGV 140
            G++L+  + P D         E+G+R ++LCRV++G  E +  G+ +  PSS +FDSGV
Sbjct: 140 RGLYLSPDNSPLDCLKDSASESEDGMRFLLLCRVLLGKSEIVPQGSTRSCPSSPEFDSGV 199

Query: 141 DDLQNPRHYIVWNMNMNTHIFPEFVVSFKFSSNVEGHLIRSESQRAISVLTTSSQGLQGH 200
           DDL + + YIVW+ +MNTH+ PEF+V  K   N                LT S + L+  
Sbjct: 200 DDLVSTKKYIVWSTHMNTHVLPEFLVCIKAPFN----------------LTRSPKRLR-- 241

Query: 201 LRLDSSADFGDVSHPVSDSGGSQGKAPSTSSSTPRAPKSPWMPFPMLFASISNKVSPKVM 260
                                                 SPWM FP+L  ++S  + P  +
Sbjct: 242 --------------------------------------SPWMAFPVLIKALSKFLPPSQI 263

Query: 261 EQISNQYELFRAKKVNRDDFVKKLRLIVGDDLLRSTITALQCKHGLR 307
             I   Y+  + +++ R + ++++R I GD LL   I A  C H ++
Sbjct: 264 LVIQKHYKDQQNRRITRSELIQRVRSITGDKLLVHIIKA--CGHKVQ 308

Probable inactive ADP-ribosyltransferase that may be involved in stress and developmental responses.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9STU1|SRO4_ARATH Probable inactive poly [ADP-ribose] polymerase SRO4 OS=Arabidopsis thaliana GN=SRO4 PE=2 SV=2

 Score = 82.8 bits (203), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 44/124 (35%), Positives = 66/124 (53%), Gaps = 10/124 (8%)

Query: 46  ANVRYAWLATSKGALSTMIMYGLGHCGASTTKSTYGIGVHLAAASCPDTSASYTDVDENG 105
           A V+Y      K  L  ++MYG  +     +     +   +      D S+S    +E+G
Sbjct: 122 ARVKYGCCGVEKEELKAILMYGFSNNALCLSPDNAPLQCMI------DPSSS---CNEDG 172

Query: 106 VRHMVLCRVIMGNMEPLFPGTKQFHPSSEDFDSGVDDLQNPRHYIVWNMNMNTHIFPEFV 165
           +  ++  R+IMG  E +   T Q +PSS +FDSGVD L +P  YI+W+ +MNTH+ PEFV
Sbjct: 173 ISFLLFSRIIMGKSE-VVCSTSQSYPSSMEFDSGVDSLTSPNKYIIWSTHMNTHVLPEFV 231

Query: 166 VSFK 169
           V  K
Sbjct: 232 VCIK 235

Probable inactive ADP-ribosyltransferase that may be involved in stress and developmental responses.

Arabidopsis thaliana (taxid: 3702)

>sp|Q460N3|PAR15_HUMAN Poly [ADP-ribose] polymerase 15 OS=Homo sapiens GN=PARP15 PE=1 SV=1

 Score = 60.1 bits (144), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/160 (22%), Positives = 77/160 (48%), Gaps = 10/160 (6%)

Query: 14  ILDVQRCSSASLLARFELFQKQLEITNKCRGDANVRYAWLATSKGALSTMIMYGLGHCGA 73
           I  ++R  +A L   +++ ++Q++I N  +   N R  +  T   ++  +  +G     A
Sbjct: 500 IEKIERIQNAFLWQSYQVKKRQMDIKNDHKN--NERLLFHGTDADSVPYVNQHGFNRSCA 557

Query: 74  STTKSTYGIGVHLAAASCPDTSASYTDVDENGVRHMVLCRVIMGNMEP-----LFPGTKQ 128
                +YG G + A  +      +Y+  D NG +HM + RV+ G         + P  K 
Sbjct: 558 GKNAVSYGKGTYFAVDASYSAKDTYSKPDSNGRKHMYVVRVLTGVFTKGRAGLVTPPPKN 617

Query: 129 FHPSSEDFDSGVDDLQNPRHYIVWNMNMNTHIFPEFVVSF 168
            H  ++ FDS  ++ ++P+ ++V+    +   +PE++++F
Sbjct: 618 PHNPTDLFDSVTNNTRSPKLFVVF---FDNQAYPEYLITF 654

Transcriptional repressor. Has ADP-ribosyltransferase activity.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 4

EC: .

EC: 2

EC: .

EC: 3

EC: 0

>sp|Q2EMV9|PAR14_MOUSE Poly [ADP-ribose] polymerase 14 OS=Mus musculus GN=Parp14 PE=1 SV=3

 Score = 57.4 bits (137), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/162 (21%), Positives = 78/162 (48%), Gaps = 12/162 (7%)

Query: 14   ILDVQRCSSASLLARFELFQKQLEITNKCRGDA-NVRYAWLATSKGALSTMIMYGLGHCG 72
            I  ++R  + +L  R++ ++K ++  N   G+  N ++ +  T   +L  +   G     
Sbjct: 1661 IEKIERIQNPALWRRYQAYKKSMDEKN---GNVRNEKHLFHGTEASSLPQLNSNGFNRSY 1717

Query: 73   ASTTKSTYGIGVHLAAASCPDTSASYTDVDENGVRHMVLCRVIMGNMEP-----LFPGTK 127
            A    + YG G + A  +      +Y+  D NG ++M   RV+ GN        + P ++
Sbjct: 1718 AGKNATAYGKGTYFAVKASYSACDTYSRPDTNGRKYMYYVRVLTGNYTNGNASLIVPPSR 1777

Query: 128  QFHPSSEDFDSGVDDLQNPRHYIVWNMNMNTHIFPEFVVSFK 169
                +++ +D+  D+ +NP  ++V+  N     +PE++++F+
Sbjct: 1778 DPQNAADLYDTVTDNDKNPSIFVVFYDN---QTYPEYLITFR 1816

Has ADP-ribosyltransferase activity (By similarity). Enhances STAT6-dependent transcription.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 4

EC: .

EC: 2

EC: .

EC: 3

EC: 0

>sp|Q54YW4|Y8045_DICDI Probable poly [ADP-ribose] polymerase DDB_G0278045 OS=Dictyostelium discoideum GN=DDB_G0278045 PE=4 SV=3

 Score = 46.2 bits (108), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/168 (22%), Positives = 82/168 (48%), Gaps = 21/168 (12%)

Query: 9   SSGVDILDVQRCSSASLLARFELFQKQL----EITNKCRGDANVRYAWLATS-KGALSTM 63
           S+  +I+ ++R  + SL   F+  +K+L    +++N    ++ + +   A   K   S+ 
Sbjct: 58  SNSFEIIKIERIQNKSLWRNFDESRKRLNEKYQVSNLDFLESTLFHGTRANDPKLIFSSK 117

Query: 64  IMYGLGHCGASTTKSTYGIGVHLAAASCPDTSASYTDVDENGVRHMVLCRVIMGNMEPLF 123
           + + +G     ++   YGIG++ A  +    + S+ +   +G + M LCRV++GN  P  
Sbjct: 118 VGFDIG----KSSFGNYGIGLYFALNASYSNNYSFEESPTSGCKQMFLCRVLLGNSAP-- 171

Query: 124 PGTKQFHPSSEDFDSGVDDLQNP--RHYIVWNMNMNTHIFPEFVVSFK 169
           P  K+        DS  D ++ P    +I   +  N   +P++++S++
Sbjct: 172 PTQKELKN-----DSTQDSIKGPGGEMFI---LKSNHTAYPDYLISYR 211

Dictyostelium discoideum (taxid: 44689)

EC: 2

EC: .

EC: 4

EC: .

EC: 2

EC: .

EC: 3

EC: 0

>sp|Q460N5|PAR14_HUMAN Poly [ADP-ribose] polymerase 14 OS=Homo sapiens GN=PARP14 PE=1 SV=3

 Score = 45.4 bits (106), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/161 (19%), Positives = 71/161 (44%), Gaps = 10/161 (6%)

Query: 14   ILDVQRCSSASLLARFELFQKQLEITNKCRGDANVRYAWLATSKGALSTMIMYGLGHCGA 73
            I  ++R  +  L   ++  +K ++  N      N +  +  T  G++  +   G     A
Sbjct: 1645 IEKIERIQNPDLWNSYQAKKKTMDAKNG--QTMNEKQLFHGTDAGSVPHVNRNGFNRSYA 1702

Query: 74   STTKSTYGIGVHLAAASCPDTSASYTDVDENGVRHMVLCRVIM-----GNMEPLFPGTKQ 128
                  YG G + A  +    + +Y+  D NG +H+   RV+      GN   + P +K 
Sbjct: 1703 GKNAVAYGKGTYFAVNANYSANDTYSRPDANGRKHVYYVRVLTGIYTHGNHSLIVPPSKN 1762

Query: 129  FHPSSEDFDSGVDDLQNPRHYIVWNMNMNTHIFPEFVVSFK 169
                ++ +D+  D++ +P  ++ +    +   +PE++++F+
Sbjct: 1763 PQNPTDLYDTVTDNVHHPSLFVAF---YDYQAYPEYLITFR 1800

Enhances STAT6-dependent transcription (By similarity). Has ADP-ribosyltransferase activity.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 4

EC: .

EC: 2

EC: .

EC: 3

EC: 0

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	324
224138216	623	predicted protein [Populus trichocarpa]	0.956	0.497	0.639	1e-115
224071395	615	predicted protein [Populus trichocarpa]	0.932	0.491	0.650	1e-110
297742051	390	unnamed protein product [Vitis vinifera]	0.935	0.776	0.640	1e-105
359474462	599	PREDICTED: inactive poly [ADP-ribose] po	0.935	0.505	0.640	1e-105
147815590	604	hypothetical protein VITISV_006105 [Viti	0.935	0.501	0.637	1e-104
356496243	583	PREDICTED: inactive poly [ADP-ribose] po	0.891	0.495	0.596	5e-99
356531443	583	PREDICTED: inactive poly [ADP-ribose] po	0.891	0.495	0.590	4e-97
359474538	598	PREDICTED: inactive poly [ADP-ribose] po	0.935	0.506	0.596	2e-94
147859682	857	hypothetical protein VITISV_023316 [Viti	0.938	0.354	0.527	5e-90
388504564	334	unknown [Medicago truncatula]	0.882	0.856	0.562	6e-88

>gi|224138216|ref|XP_002326547.1| predicted protein [Populus trichocarpa] gi|222833869|gb|EEE72346.1| predicted protein [Populus trichocarpa]

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 211/330 (63%), Positives = 249/330 (75%), Gaps = 20/330 (6%)

Query: 1   MFLMGMSPSSGVDILDVQRCSSASLLARFELFQKQLEITNKCRGDANVRYAWLATSKGAL 60
           +F+  M+P  G DI+D+ RCSS  +  RFELFQKQ+E+T K RGDANVRYAWLA+SKGAL
Sbjct: 285 IFVTSMNPFGGADIVDISRCSSTLMPVRFELFQKQIELTEKYRGDANVRYAWLASSKGAL 344

Query: 61  STMIMYGLGHCGASTTKSTYGIGVHLAAASCPDTSASYTDVDENGVRHMVLCRVIMGNME 120
           ST+++YGLGHC   TTKS +GIGVHL+AA+   TSA+Y DVDENGVRH+V CRVIMGNME
Sbjct: 345 STIMLYGLGHCVPCTTKSEHGIGVHLSAANFCHTSANYCDVDENGVRHLVFCRVIMGNME 404

Query: 121 PLFPGTKQFHPSSEDFDSGVDDLQNPRHYIVWNMNMNTHIFPEFVVSFKFSSNVEGHLIR 180
            L  G++QFHPSSEDFDSGVDDL+NPR YIVWNMNMNTHI+PEFVVSFKF+ N EG L+ 
Sbjct: 405 LLQHGSRQFHPSSEDFDSGVDDLENPREYIVWNMNMNTHIYPEFVVSFKFTPNSEGFLVG 464

Query: 181 SESQRAISVLTTSSQGLQGHLRLDS--------------------SADFGDVSHPVSDSG 220
           SES+ ++S +TTSS G QG L ++S                    +AD G    PVS SG
Sbjct: 465 SESKHSVSGVTTSSNGGQGCLPVESPAVDLNVPVESSAVDLNKSPAADMGSEIQPVSGSG 524

Query: 221 GSQGKAPSTSSSTPRAPKSPWMPFPMLFASISNKVSPKVMEQISNQYELFRAKKVNRDDF 280
            S GK+PS SSS  R PKSPWMPFPMLFA ISNKV  K ME I+N YELFR KK++R++F
Sbjct: 525 RSLGKSPSLSSSNTRTPKSPWMPFPMLFAVISNKVPSKDMELITNHYELFREKKISRENF 584

Query: 281 VKKLRLIVGDDLLRSTITALQCKHGLRCSV 310
           VKKLRLIVGD LL+STIT+LQ K    C V
Sbjct: 585 VKKLRLIVGDALLKSTITSLQGKLPSECEV 614

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224071395|ref|XP_002303439.1| predicted protein [Populus trichocarpa] gi|222840871|gb|EEE78418.1| predicted protein [Populus trichocarpa]

 Score =  403 bits (1035), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 210/323 (65%), Positives = 243/323 (75%), Gaps = 21/323 (6%)

Query: 1   MFLMGMSPSSGVDILDVQRCSSASLLARFELFQKQLEITNKCRGDANVRYAWLATSKGAL 60
           +F+  M P  G DI+D+ RCSS S+ ARFELF KQ+ +T K RGDANVRYAWLA+SKGAL
Sbjct: 274 LFVTVMKPFGGADIVDIYRCSSTSMQARFELFLKQIALTEKYRGDANVRYAWLASSKGAL 333

Query: 61  STMIMYGLGHCGASTTKSTYGIGVHLAAASCPDTSASYTDVDENGVRHMVLCRVIMGNME 120
           ST++ YGLGHCG  TT S +GIGVHL+AA+C  TS  Y DVDENG RH+V CRVIMGNME
Sbjct: 334 STIMSYGLGHCGPCTTNSKHGIGVHLSAANCCHTSVKYCDVDENGERHLVFCRVIMGNME 393

Query: 121 PLFPGTKQFHPSSEDFDSGVDDLQNPRHYIVWNMNMNTHIFPEFVVSFKFSSNVEGHLIR 180
            L  G++QFHPSSE+FDSGVDDL++PR YIVWNMNMNTHI+PEFVVSFK SS  EG L+ 
Sbjct: 394 LLHSGSRQFHPSSENFDSGVDDLESPREYIVWNMNMNTHIYPEFVVSFKISSTTEGFLVA 453

Query: 181 SESQRAISVLTTSSQGLQGHLRLDSS--------------------ADFGDVSHPVSDSG 220
           SES+  +S +TTS  G QG L ++SS                    AD G    PV  SG
Sbjct: 454 SESKHTVSGVTTSHGG-QGRLPVESSAVDLNLPVESSAVDLNESPTADMGSKIQPVLGSG 512

Query: 221 GSQGKAPSTSSSTPRAPKSPWMPFPMLFASISNKVSPKVMEQISNQYELFRAKKVNRDDF 280
            S GK+PS SSS+ RAPKSPWMPFPMLFA+ISNKV  K ME I+N YELFR KKVNR+DF
Sbjct: 513 RSLGKSPSLSSSSTRAPKSPWMPFPMLFAAISNKVPSKDMELITNNYELFREKKVNREDF 572

Query: 281 VKKLRLIVGDDLLRSTITALQCK 303
           VKKLRLIVGD LL+STIT+LQCK
Sbjct: 573 VKKLRLIVGDALLKSTITSLQCK 595

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297742051|emb|CBI33838.3| unnamed protein product [Vitis vinifera]

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 196/306 (64%), Positives = 229/306 (74%), Gaps = 3/306 (0%)

Query: 1   MFLMGMSPSSGVDILDVQRCSSASLLARFELFQKQLEITNKCRGDANVRYAWLATSKGAL 60
           MF  GM+     DI++V R SSAS+ AR ELFQKQ+EIT+K R DANV+YAWLA SK AL
Sbjct: 63  MFTSGMNSLISADIIEVYRGSSASMEARLELFQKQIEITSKYRADANVKYAWLAASKEAL 122

Query: 61  STMIMYGLGHCGASTTKSTYGIGVHLAAASCPDTSASYTDVDENGVRHMVLCRVIMGNME 120
           S+++MYGLGHC  S  K  YGIGVHL AA+    S +Y DVDENGV+H+VLCRVIMGNME
Sbjct: 123 SSIMMYGLGHCRPSKVKPVYGIGVHLTAANFSYPSVNYCDVDENGVQHIVLCRVIMGNME 182

Query: 121 PLFPGTKQFHPSSEDFDSGVDDLQNPRHYIVWNMNMNTHIFPEFVVSFKFSSNV--EGHL 178
            + PG+ Q HPSSE+FDSGVDDLQNP+HYI+WNMNMNTHI+PE+VVSFK SS V  EG+L
Sbjct: 183 LVHPGSGQCHPSSENFDSGVDDLQNPKHYIIWNMNMNTHIYPEYVVSFKVSSRVGAEGYL 242

Query: 179 IRSESQRAISVLTTSSQGLQGHLRLD-SSADFGDVSHPVSDSGGSQGKAPSTSSSTPRAP 237
           I +ES   IS +TT     QGH +L       G+ SHP    G S GKA +  SST R P
Sbjct: 243 IGNESNYDISGVTTCQGQSQGHSKLGLHPVGLGNDSHPTPSLGRSLGKATTLGSSTLRVP 302

Query: 238 KSPWMPFPMLFASISNKVSPKVMEQISNQYELFRAKKVNRDDFVKKLRLIVGDDLLRSTI 297
           KSPWMPFPMLFA+IS KV  K M+ +  QYELFR KK++R DFVKKLRLIVGD LL+STI
Sbjct: 303 KSPWMPFPMLFAAISKKVPLKDMQLVDTQYELFRRKKISRADFVKKLRLIVGDTLLKSTI 362

Query: 298 TALQCK 303
           T LQCK
Sbjct: 363 THLQCK 368

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359474462|ref|XP_002276953.2| PREDICTED: inactive poly [ADP-ribose] polymerase RCD1-like [Vitis vinifera]

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 196/306 (64%), Positives = 229/306 (74%), Gaps = 3/306 (0%)

Query: 1   MFLMGMSPSSGVDILDVQRCSSASLLARFELFQKQLEITNKCRGDANVRYAWLATSKGAL 60
           MF  GM+     DI++V R SSAS+ AR ELFQKQ+EIT+K R DANV+YAWLA SK AL
Sbjct: 272 MFTSGMNSLISADIIEVYRGSSASMEARLELFQKQIEITSKYRADANVKYAWLAASKEAL 331

Query: 61  STMIMYGLGHCGASTTKSTYGIGVHLAAASCPDTSASYTDVDENGVRHMVLCRVIMGNME 120
           S+++MYGLGHC  S  K  YGIGVHL AA+    S +Y DVDENGV+H+VLCRVIMGNME
Sbjct: 332 SSIMMYGLGHCRPSKVKPVYGIGVHLTAANFSYPSVNYCDVDENGVQHIVLCRVIMGNME 391

Query: 121 PLFPGTKQFHPSSEDFDSGVDDLQNPRHYIVWNMNMNTHIFPEFVVSFKFSSNV--EGHL 178
            + PG+ Q HPSSE+FDSGVDDLQNP+HYI+WNMNMNTHI+PE+VVSFK SS V  EG+L
Sbjct: 392 LVHPGSGQCHPSSENFDSGVDDLQNPKHYIIWNMNMNTHIYPEYVVSFKVSSRVGAEGYL 451

Query: 179 IRSESQRAISVLTTSSQGLQGHLRLD-SSADFGDVSHPVSDSGGSQGKAPSTSSSTPRAP 237
           I +ES   IS +TT     QGH +L       G+ SHP    G S GKA +  SST R P
Sbjct: 452 IGNESNYDISGVTTCQGQSQGHSKLGLHPVGLGNDSHPTPSLGRSLGKATTLGSSTLRVP 511

Query: 238 KSPWMPFPMLFASISNKVSPKVMEQISNQYELFRAKKVNRDDFVKKLRLIVGDDLLRSTI 297
           KSPWMPFPMLFA+IS KV  K M+ +  QYELFR KK++R DFVKKLRLIVGD LL+STI
Sbjct: 512 KSPWMPFPMLFAAISKKVPLKDMQLVDTQYELFRRKKISRADFVKKLRLIVGDTLLKSTI 571

Query: 298 TALQCK 303
           T LQCK
Sbjct: 572 THLQCK 577

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class: N/A

Phylum: Streptophyta

>gi|147815590|emb|CAN61759.1| hypothetical protein VITISV_006105 [Vitis vinifera]

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 195/306 (63%), Positives = 228/306 (74%), Gaps = 3/306 (0%)

Query: 1   MFLMGMSPSSGVDILDVQRCSSASLLARFELFQKQLEITNKCRGDANVRYAWLATSKGAL 60
           MF  GM+     DI++V R SSAS+ AR ELFQKQ+EIT+K R DANV+YAWLA SK AL
Sbjct: 272 MFTSGMNSLISADIIEVYRGSSASMEARLELFQKQIEITSKYRADANVKYAWLAASKEAL 331

Query: 61  STMIMYGLGHCGASTTKSTYGIGVHLAAASCPDTSASYTDVDENGVRHMVLCRVIMGNME 120
           S+++MYGLGHC  S  K  YGIGVHL AA+    S +Y DVDENGV+H+VLCRVIMGNME
Sbjct: 332 SSIMMYGLGHCRPSKVKPVYGIGVHLTAANFSYPSVNYCDVDENGVQHIVLCRVIMGNME 391

Query: 121 PLFPGTKQFHPSSEDFDSGVDDLQNPRHYIVWNMNMNTHIFPEFVVSFKFSSNV--EGHL 178
            + PG+ Q HPSSE+FDSGVDDLQNP+HYI+WNMNMNTHI+PE+VVSFK SS V  EG+L
Sbjct: 392 LVHPGSGQCHPSSENFDSGVDDLQNPKHYIIWNMNMNTHIYPEYVVSFKVSSRVGAEGYL 451

Query: 179 IRSESQRAISVLTTSSQGLQGHLRLD-SSADFGDVSHPVSDSGGSQGKAPSTSSSTPRAP 237
           I +ES   IS +TT     QGH +L        + SHP    G S GKA +  SST R P
Sbjct: 452 IGNESNYDISGVTTCQGQSQGHSKLGLHPVGLXNDSHPTPSLGRSLGKATTLGSSTLRVP 511

Query: 238 KSPWMPFPMLFASISNKVSPKVMEQISNQYELFRAKKVNRDDFVKKLRLIVGDDLLRSTI 297
           KSPWMPFPMLFA+IS KV  K M+ +  QYELFR KK++R DFVKKLRLIVGD LL+STI
Sbjct: 512 KSPWMPFPMLFAAISKKVPLKDMQLVDTQYELFRRKKISRADFVKKLRLIVGDTLLKSTI 571

Query: 298 TALQCK 303
           T LQCK
Sbjct: 572 THLQCK 577

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356496243|ref|XP_003516978.1| PREDICTED: inactive poly [ADP-ribose] polymerase RCD1-like [Glycine max]

 Score =  367 bits (941), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 182/305 (59%), Positives = 222/305 (72%), Gaps = 16/305 (5%)

Query: 1   MFLMGMSP--SSGVDILDVQRCSSASLLARFELFQKQLEITNKCRGDANVRYAWLATSKG 58
           MFL GMS   S+  DI+++ +CS AS+ AR+ELFQKQ E+T K  G+AN+RYAWLA+SKG
Sbjct: 278 MFLKGMSSFGSTDSDIVEIYQCSGASMQARWELFQKQAELTKKNHGEANIRYAWLASSKG 337

Query: 59  ALSTMIMYGLGHCGASTTKSTYGIGVHLAAASCPDTSASYTDVDENGVRHMVLCRVIMGN 118
            LSTM+ YGL H G S +K TYGIGVHLAA +CPD S  Y DVDENGVRH+ LCRVIMGN
Sbjct: 338 ELSTMMNYGLSHYGLSGSKCTYGIGVHLAAVTCPDASVRYCDVDENGVRHLALCRVIMGN 397

Query: 119 MEPLFPGTKQFHPSSEDFDSGVDDLQNPRHYIVWNMNMNTHIFPEFVVSFKFSSNVEGHL 178
           ME L PGT QFHPSS ++D+GVD ++ PR+Y+VWNMNMNTHI+PEFVVSFK SS+ EGH 
Sbjct: 398 MEILQPGTGQFHPSSCEYDNGVDSIECPRYYVVWNMNMNTHIYPEFVVSFKVSSDAEGHF 457

Query: 179 IRSESQRAISVLTTSSQGLQGHLRLDSSADFGDVSHPVSDSGGSQGKAPSTSSSTPRAPK 238
             SE  + +S + ++ QG  G L  +SS                 GKAPS  +STP+ PK
Sbjct: 458 CGSEG-KNVSGVNSACQGPHGLLHSESSTV-------------DNGKAPSMVASTPKVPK 503

Query: 239 SPWMPFPMLFASISNKVSPKVMEQISNQYELFRAKKVNRDDFVKKLRLIVGDDLLRSTIT 298
           SPWMPFP+L  +I N+V PK M+ I   YE FR+K ++RDDFVK LRLIVGD LLR+TIT
Sbjct: 504 SPWMPFPLLLDAIRNQVPPKGMDVIKIYYEQFRSKHISRDDFVKMLRLIVGDGLLRTTIT 563

Query: 299 ALQCK 303
            LQ K
Sbjct: 564 NLQFK 568

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class: N/A

Phylum: Streptophyta

>gi|356531443|ref|XP_003534287.1| PREDICTED: inactive poly [ADP-ribose] polymerase RCD1-like [Glycine max]

 Score =  360 bits (925), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 180/305 (59%), Positives = 218/305 (71%), Gaps = 16/305 (5%)

Query: 1   MFLMGMSP--SSGVDILDVQRCSSASLLARFELFQKQLEITNKCRGDANVRYAWLATSKG 58
           MFL GM    S+  DI+++  CS AS+ AR+ELFQKQ EIT K  G+AN+RYAWLA+SKG
Sbjct: 278 MFLKGMCSFGSTDSDIVEIYHCSGASMQARWELFQKQAEITKKNHGEANIRYAWLASSKG 337

Query: 59  ALSTMIMYGLGHCGASTTKSTYGIGVHLAAASCPDTSASYTDVDENGVRHMVLCRVIMGN 118
            LSTM+ YGL H G S +K TYGIGVHLAA +CPD S  Y DVDENGVRH+ LCRVIMGN
Sbjct: 338 ELSTMMNYGLSHYGLSGSKCTYGIGVHLAAVTCPDASVRYCDVDENGVRHLALCRVIMGN 397

Query: 119 MEPLFPGTKQFHPSSEDFDSGVDDLQNPRHYIVWNMNMNTHIFPEFVVSFKFSSNVEGHL 178
           ME L PGT QFHPSS ++D+GVD ++ P++Y+VWNMNMNTHI+PEFVVSFK SS+ EGH 
Sbjct: 398 MEILRPGTDQFHPSSCEYDNGVDAIECPQYYVVWNMNMNTHIYPEFVVSFKVSSDAEGHF 457

Query: 179 IRSESQRAISVLTTSSQGLQGHLRLDSSADFGDVSHPVSDSGGSQGKAPSTSSSTPRAPK 238
             SE +  +S + T+  G  G L  +SS                 GKAPS  SSTP+ PK
Sbjct: 458 CGSEGKN-VSGVNTACDGPHGLLNSESST-------------VDNGKAPSMVSSTPKVPK 503

Query: 239 SPWMPFPMLFASISNKVSPKVMEQISNQYELFRAKKVNRDDFVKKLRLIVGDDLLRSTIT 298
           SPWMPFP+L  +I ++V P  M+ I   YE FR+K ++RDDFVK LRLIVGD LLR+TIT
Sbjct: 504 SPWMPFPVLLDAIRDQVPPTGMDVIKTYYEQFRSKHISRDDFVKMLRLIVGDGLLRTTIT 563

Query: 299 ALQCK 303
            LQ K
Sbjct: 564 NLQYK 568

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class: N/A

Phylum: Streptophyta

>gi|359474538|ref|XP_002277020.2| PREDICTED: inactive poly [ADP-ribose] polymerase RCD1-like [Vitis vinifera]

 Score =  352 bits (902), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 183/307 (59%), Positives = 222/307 (72%), Gaps = 4/307 (1%)

Query: 1   MFLMGMSPSSGVDILDVQRCSSASLLARFELFQKQLEITNKCRGDANVRYAWLATSKGAL 60
           MF+  MSP     IL+V + SS+S+ AR ELFQKQ+EIT+K R +ANVRYAWLA+SK AL
Sbjct: 269 MFISSMSPFISASILEVYQGSSSSMQARLELFQKQVEITSKYRTEANVRYAWLASSKEAL 328

Query: 61  STMIMYGLGHCGASTTKSTYGIGVHLAAASCPDTSASYTDVDENGVRHMVLCRVIMGNME 120
           S+++MYGLGH G S  K TYGIGVHL A + P  SA+Y DVDENGV+H+VLCRVI+GNME
Sbjct: 329 SSIMMYGLGHYGTSQEKLTYGIGVHLTAVNFPYISANYCDVDENGVQHVVLCRVILGNME 388

Query: 121 PLFPGTKQFHPSSEDFDSGVDDLQNPRHYIVWNMNMNTHIFPE--FVVSFKFSSNVEGHL 178
            +  G+KQ +PS EDFDSGVDDLQNPRHYIVWNMNMNTHI+PE         SS+ EG+L
Sbjct: 389 LVHLGSKQCYPSCEDFDSGVDDLQNPRHYIVWNMNMNTHIYPEFVVSFKVSSSSSAEGYL 448

Query: 179 IRSESQRAISVLTTSSQGLQGHLRLDSSADFGDVSHPVSDSG--GSQGKAPSTSSSTPRA 236
           + +  +  +S  +   +  +G L+L S    G   H     G  GS GKA +  SST + 
Sbjct: 449 VENGRKDDVSGFSPPQRQPEGQLQLASHHPVGLGPHCPQTPGLEGSLGKAATFGSSTVKV 508

Query: 237 PKSPWMPFPMLFASISNKVSPKVMEQISNQYELFRAKKVNRDDFVKKLRLIVGDDLLRST 296
           PKSPWMPFPMLFA+IS KV  K M+ ++ QYE FR KK+NR DFVKKLR+IVGD LLRST
Sbjct: 509 PKSPWMPFPMLFAAISKKVPLKDMQLVNAQYEQFRTKKINRADFVKKLRMIVGDTLLRST 568

Query: 297 ITALQCK 303
           IT LQCK
Sbjct: 569 ITHLQCK 575

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class: N/A

Phylum: Streptophyta

>gi|147859682|emb|CAN81025.1| hypothetical protein VITISV_023316 [Vitis vinifera]

 Score =  337 bits (864), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 185/351 (52%), Positives = 225/351 (64%), Gaps = 47/351 (13%)

Query: 1   MFLMGMSPSSGVDILDVQRCSSASLLARFELFQKQLEITNKCRGDANVRYAWLATSKGAL 60
           MF+  MSP     IL+V + SS+S+ AR ELFQKQ+EIT+K R +ANVRYAWLA+SK AL
Sbjct: 269 MFISSMSPFISASILEVYQGSSSSMQARLELFQKQVEITSKYRTEANVRYAWLASSKEAL 328

Query: 61  STMIMYGLGHCGASTTKSTYGIGVHLAAASCPDTSASYTDVDENGVRHMVLCRVIMGNME 120
           S+++MYGLGH G S  K TYGIGVHL A + P  SA+Y DVDENGV+H+VLCRVI+GNME
Sbjct: 329 SSIMMYGLGHYGTSQEKLTYGIGVHLTAVNFPYISANYCDVDENGVQHVVLCRVILGNME 388

Query: 121 PLFPGTKQFHPSSEDFDSGVDDLQNPRHYIVWNMNMNTHIFPE--FVVSFKFSSNVEGHL 178
            +  G+KQ +PS EDFDSGVDDLQNPRHYIVWNMNMNTHI+PE         SS+ EG+L
Sbjct: 389 LVHLGSKQCYPSCEDFDSGVDDLQNPRHYIVWNMNMNTHIYPEFVVSFKVSSSSSAEGYL 448

Query: 179 IRSESQRAISVLTTSSQGLQGHLRLDSSADFGDV----SHPVSDSG-------------- 220
           + +  +  +S  +   +  +G L+L S    G V       VS+ G              
Sbjct: 449 VENGRKDDVSGFSPPQRQPEGQLQLASHHPVGLVVTGTGKEVSNEGYHIKRSLEGSGLNE 508

Query: 221 ---------------------------GSQGKAPSTSSSTPRAPKSPWMPFPMLFASISN 253
                                      GS GKA +  SST + PKSPWMPFPMLFA+IS 
Sbjct: 509 VLRFETWIFGFPNGKKGIEAAVPEGLEGSLGKAATFGSSTVKVPKSPWMPFPMLFAAISK 568

Query: 254 KVSPKVMEQISNQYELFRAKKVNRDDFVKKLRLIVGDDLLRSTITALQCKH 304
           KV  K M+ ++ QYE FR KK+NR DFVKKLR+IVGD LLRSTIT LQCK 
Sbjct: 569 KVPLKDMQLVNAQYEQFRTKKINRADFVKKLRMIVGDTLLRSTITHLQCKE 619

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388504564|gb|AFK40348.1| unknown [Medicago truncatula]

 Score =  330 bits (846), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 171/304 (56%), Positives = 212/304 (69%), Gaps = 18/304 (5%)

Query: 1   MFLMGMSPSSGVDILDVQRCSSASLLARFELFQKQLEITNKCRGDANVRYAWLATSKGAL 60
           MFL G S     DI+++   SS  +L+R ELF+KQ EIT  CRGDAN++YAWLA+SKG L
Sbjct: 34  MFLKGTSSFGSADIVEIYPFSSTMMLSRLELFEKQAEITKNCRGDANIQYAWLASSKGEL 93

Query: 61  STMIMYGLGHCGASTTKSTYGIGVHLAAASCPDTSASYTDVDENGVRHMVLCRVIMGNME 120
           STM+  GLGHCG ST+K T+G GVHLAAA+ P  SAS+ D+DENGVRH+V CRVIMGNME
Sbjct: 94  STMMKCGLGHCGISTSKCTHGFGVHLAAATFPFASASHCDIDENGVRHLVFCRVIMGNME 153

Query: 121 PLFPGTKQFHPSSEDFDSGVDDLQNPRHYIVWNMNMNTHIFPEFVVSFKFSSNVEGHLIR 180
            L PGT+QF PSS D+DSGVDD+ NPR+YIVWNMN NTHI PE+VVSFK SS  EG L+ 
Sbjct: 154 LLRPGTRQFRPSSSDYDSGVDDIHNPRYYIVWNMNTNTHICPEYVVSFKVSSATEGLLLG 213

Query: 181 SESQRAISVLTTSSQGLQGHLRLDSSADFGDVSHPVSDSGGSQGKAPSTSSSTPRAPKSP 240
           S+++  I  + ++S+  +   R +SS           D+G         +S + R P SP
Sbjct: 214 SKTKNNIFGVNSASRSPKILSRSESST---------VDTG--------IASGSRRGPTSP 256

Query: 241 WMPFPMLFASISNKVSPKVMEQISNQYELFRAKKVNRDDFVKKLRLIVGDD-LLRSTITA 299
            MPFP+L  ++ NKVS K ME I+  Y  FRAK++ RDDF KKLRLIV DD LLR+TI  
Sbjct: 257 SMPFPVLIDALKNKVSAKDMEVINMHYLQFRAKRMTRDDFAKKLRLIVRDDALLRATIVG 316

Query: 300 LQCK 303
           LQ K
Sbjct: 317 LQSK 320

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	324
TAIR|locus:2031700	589	RCD1 "RADICAL-INDUCED CELL DEA	0.876	0.482	0.506	2.1e-68
TAIR|locus:2062471	568	SRO1 "similar to RCD one 1" [A	0.879	0.501	0.496	1.2e-65
TAIR|locus:2028879	323	SRO2 "similar to RCD one 2" [A	0.515	0.517	0.405	5.2e-41
TAIR|locus:2154084	309	SRO5 "similar to RCD one 5" [A	0.466	0.488	0.363	8.8e-32
TAIR|locus:2016159	305	SRO3 "similar to RCD one 3" [A	0.638	0.678	0.352	4.4e-29
TAIR|locus:2100357	316	SRO4 "similar to RCD one 4" [A	0.358	0.367	0.367	3e-20
UNIPROTKB|E1BQC5	1636	PARP14 "Uncharacterized protei	0.493	0.097	0.247	1.1e-09
UNIPROTKB|F1PEU2	686	PARP15 "Uncharacterized protei	0.456	0.215	0.234	1.1e-06
UNIPROTKB|B7ZL48	375	PARP15 "Poly [ADP-ribose] poly	0.475	0.410	0.225	2.6e-06
UNIPROTKB|C9J7L3	483	PARP15 "Poly [ADP-ribose] poly	0.475	0.318	0.225	4.1e-06

TAIR|locus:2031700 RCD1 "RADICAL-INDUCED CELL DEATH1" [Arabidopsis thaliana (taxid:3702)]

 Score = 694 (249.4 bits), Expect = 2.1e-68, P = 2.1e-68
 Identities = 154/304 (50%), Positives = 189/304 (62%)

Query:     1 MFLMGMSPSSGVDILDVQRCSSASLLARFELFQKQLEITNKCRGDANVRYAWLATSKGAL 60
             MF +G +    V +LDV R SS    AR  LFQKQ+EIT K RGDANVRYAWL   +  L
Sbjct:   281 MFAVGTASLGHVPVLDVGRFSSEIAEARLALFQKQVEITKKHRGDANVRYAWLPAKREVL 340

Query:    61 STMIMYGLGHCGASTTKSTYGIGVHLAAASCPDTSASYTDVDENGVRHMVLCRVIMGNME 120
             S ++M GLG  GA   KS YG+G+HL AA CP  SA Y DVDENGVR+MVLCRVIMGNME
Sbjct:   341 SAVMMQGLGVGGAFIRKSIYGVGIHLTAADCPYFSARYCDVDENGVRYMVLCRVIMGNME 400

Query:   121 PLFPGTK-QFHPSSEDFDSGVDDLQNPRHYIVWNMNMNTHIFPEFVVSFKFSS--NVEGH 177
              L  G K QF    E++D+GVDD+++P++YIVWN+NMNTHIFPEFVV FK S+  N EG+
Sbjct:   401 -LLRGDKAQFFSGGEEYDNGVDDIESPKNYIVWNINMNTHIFPEFVVRFKLSNLPNAEGN 459

Query:   178 LIRSESQRAISVLTTSSQGLQGHLRLDSSADFGDVSHPVSDSGGSQGXXXXXXXXXXXXX 237
             LI       ++        L+G   L    +        S+ G                 
Sbjct:   460 LIAKRDNSGVT--------LEGPKDLPPQLE--------SNQGARGSGSANSVGSSTTRP 503

Query:   238 XXXWMPFPMLFASISNKVSPKVMEQISNQYELFRAKKVNRDDFVKKLRLIVGDDLLRSTI 297
                WMPFP LFA+IS+KV+   M  I+  Y+  R KK+ R +FV+KLR+IVGDDLLRSTI
Sbjct:   504 KSPWMPFPTLFAAISHKVAENDMLLINADYQQLRDKKMTRAEFVRKLRVIVGDDLLRSTI 563

Query:   298 TALQ 301
             T LQ
Sbjct:   564 TTLQ 567

GO:0003950 "NAD+ ADP-ribosyltransferase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;ISS;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0006979 "response to oxidative stress" evidence=IGI

GO:0000303 "response to superoxide" evidence=RCA;IMP

GO:0009723 "response to ethylene stimulus" evidence=IMP

GO:0009816 "defense response to bacterium, incompatible interaction" evidence=IMP

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA;IMP

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA;IMP

GO:0010193 "response to ozone" evidence=IMP

GO:0042542 "response to hydrogen peroxide" evidence=IMP

GO:0009414 "response to water deprivation" evidence=IMP

GO:0012501 "programmed cell death" evidence=IMP

GO:0005737 "cytoplasm" evidence=IDA

GO:0009651 "response to salt stress" evidence=RCA;IMP

GO:2000377 "regulation of reactive oxygen species metabolic process" evidence=IMP

GO:0006809 "nitric oxide biosynthetic process" evidence=IMP

GO:0006970 "response to osmotic stress" evidence=IMP

GO:0009790 "embryo development" evidence=IMP

GO:0010102 "lateral root morphogenesis" evidence=IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006096 "glycolysis" evidence=RCA

GO:0006486 "protein glycosylation" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006623 "protein targeting to vacuole" evidence=RCA

GO:0006833 "water transport" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0006972 "hyperosmotic response" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0007154 "cell communication" evidence=RCA

GO:0008219 "cell death" evidence=RCA

GO:0009266 "response to temperature stimulus" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009743 "response to carbohydrate stimulus" evidence=RCA

GO:0009751 "response to salicylic acid stimulus" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2062471 SRO1 "similar to RCD one 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 668 (240.2 bits), Expect = 1.2e-65, P = 1.2e-65
 Identities = 151/304 (49%), Positives = 196/304 (64%)

Query:     1 MFLMGMSPSSGVDILDVQRCSSASLLARFELFQKQLEITNKCRGDANVRYAWLATSKGAL 60
             MF +G +    V+ LDV + SS    AR  LFQKQ +IT K RGDAN+RYAW+   K  L
Sbjct:   277 MFALGAATLGHVESLDVYQFSSEIAKARLSLFQKQADITKKHRGDANIRYAWVPAKKEVL 336

Query:    61 STMIMYGLGHCGASTTKSTYGIGVHLAAASCPDTSASYTDVDENGVRHMVLCRVIMGNME 120
             S ++M+GLG  GA   KS YG+GVH  AA+CP  SA Y D+D+NGVRHMVLCRVIMGNME
Sbjct:   337 SAVMMHGLGVGGAFIKKSMYGVGVH--AANCPYFSARYCDIDDNGVRHMVLCRVIMGNME 394

Query:   121 PLFPGTKQFHPSSEDFDSGVDDLQNPRHYIVWNMNMNTHIFPEFVVSFKFS-SNVEGHLI 179
             PL     Q+    E++D+GVDD+++P+HY++WNMNMNTHI+PEFVVSFK S  N EG+++
Sbjct:   395 PLRGDNTQYFTGGEEYDNGVDDVESPKHYLIWNMNMNTHIYPEFVVSFKLSIPNAEGNIL 454

Query:   180 -RSESQRAISVLTTSSQGLQGHLRLDSSADFGDVSHPVSDSGGSQGXXXXXXXXXXXXXX 238
               ++S+   S LT   +G +G      S + G VS+     GGS G              
Sbjct:   455 PTTQSRHESSGLTL--EGPKG----SPSNEPGRVSN-----GGS-GSEKNSSSSRRPRSP 502

Query:   239 XXWMPFPMLFASISNKVSPKVMEQISNQYELFRAKKVNRDDFVKKLRLIVGDD-LLRSTI 297
                MPFP+LF +IS+K++ K M+ I   Y+  R KKV+R +F K L +IVGDD LL STI
Sbjct:   503 I--MPFPLLFKAISSKIARKDMDLIIAGYQELREKKVSRKEFYKTLSMIVGDDDLLISTI 560

Query:   298 TALQ 301
             T LQ
Sbjct:   561 TGLQ 564

GO:0003950 "NAD+ ADP-ribosyltransferase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006970 "response to osmotic stress" evidence=IMP

GO:0006979 "response to oxidative stress" evidence=IMP

GO:0009651 "response to salt stress" evidence=IMP

GO:0009790 "embryo development" evidence=IMP

GO:0010102 "lateral root morphogenesis" evidence=IMP

GO:0048573 "photoperiodism, flowering" evidence=IMP

TAIR|locus:2028879 SRO2 "similar to RCD one 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 341 (125.1 bits), Expect = 5.2e-41, Sum P(2) = 5.2e-41
 Identities = 71/175 (40%), Positives = 109/175 (62%)

Query:     3 LMGMSP-SSGVDILDVQRCSSA---SLLARFELFQKQLE-ITNKCRGDANVRYAWLATSK 57
             L GM   SS   I+ + + SS    +  A+F  F+   + +  K  GDANV+Y W A S+
Sbjct:    63 LSGMGVVSSDTTIVTISKNSSERGITTRAKFLAFRIFTDAVARKHGGDANVKYGWYAGSR 122

Query:    58 GALSTMIMYGLGHCGASTTKS---TYGIGVHLAAASCPDTSASYTDVDENGVRHMVLCRV 114
               +  +I YG  +      ++   ++GIG+HL  + C   +AS T+ DE G+R+++LCRV
Sbjct:   123 DEIQRIISYGFSNRDVGKFENDGGSHGIGIHLVPSKCSLLAASATEQDEEGLRYLLLCRV 182

Query:   115 IMGNMEPLFPGTKQFHPSSEDFDSGVDDLQNPRHYIVWNMNMNTHIFPEFVVSFK 169
             I+G  E +  G+KQ +PSS +FDSGVDDL NPR+Y++W+ NMN+ I P ++VSF+
Sbjct:   183 ILGKPEIIISGSKQSYPSSAEFDSGVDDLHNPRNYVIWSCNMNSCILPSYIVSFR 237

GO:0003950 "NAD+ ADP-ribosyltransferase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

TAIR|locus:2154084 SRO5 "similar to RCD one 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 270 (100.1 bits), Expect = 8.8e-32, Sum P(2) = 8.8e-32
 Identities = 56/154 (36%), Positives = 90/154 (58%)

Query:    22 SASLLARFELFQKQLEITNKCRGDANVRYAWLATSKGALSTMIMYGLGHCGASTTKSTYG 81
             S + L  F++FQ+ +++ +   G A V+Y W + SK  L T+  YG           ++G
Sbjct:    82 SRAKLKTFQVFQEAVQMKHGGDGGAKVKYGWCSVSKHELKTIFEYGFSE--PLRNDGSFG 139

Query:    82 IGVHLAAASCP-DTSASYTDVDENGVRHMVLCRVIMGNMEPLFPGTKQFHPSSEDFDSGV 140
              G++L+  + P D         E+G+R ++LCRV++G  E +  G+ +  PSS +FDSGV
Sbjct:   140 RGLYLSPDNSPLDCLKDSASESEDGMRFLLLCRVLLGKSEIVPQGSTRSCPSSPEFDSGV 199

Query:   141 DDLQNPRHYIVWNMNMNTHIFPEFVVSFKFSSNV 174
             DDL + + YIVW+ +MNTH+ PEF+V  K   N+
Sbjct:   200 DDLVSTKKYIVWSTHMNTHVLPEFLVCIKAPFNL 233

GO:0003950 "NAD+ ADP-ribosyltransferase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0005739 "mitochondrion" evidence=IDA

GO:0009651 "response to salt stress" evidence=IEP

GO:0072593 "reactive oxygen species metabolic process" evidence=IMP

GO:0010200 "response to chitin" evidence=RCA

TAIR|locus:2016159 SRO3 "similar to RCD one 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 323 (118.8 bits), Expect = 4.4e-29, P = 4.4e-29
 Identities = 78/221 (35%), Positives = 128/221 (57%)

Query:     2 FLMGM-SPSSGVDILDVQRCSSASLL---ARFELFQKQLE-ITNKCRGDANVRYAWLATS 56
             FL GM S ++   I+ V++  +  L+   A+F +F+   E +  K  G AN+RY W + S
Sbjct:    54 FLSGMGSFATETTIVTVRKILTQRLITTKAKFAVFKLFTEAMKRKNNGYANIRYGWYSGS 113

Query:    57 KGALSTMIMYGLGHCGASTTKS---TYGIGVHLAAASCPDTSASYTDVDENGVRHMVLCR 113
             K  +  +I YG  +      ++   ++G+G+HL        +A   + DE G+++++LCR
Sbjct:   114 KEEIDRVITYGFSNREIKKVENDVGSHGVGIHLVHHRYSLAAALVGEGDEEGIKNILLCR 173

Query:   114 VIMGNMEPLFPGTKQFHPSSEDFDSGVDDLQNPRHYIVWNMNMNTHIFPEFVVSFKFSSN 173
             VI+G  E +  G+KQ +PSS  FDSGVD+L+NPR Y++W+ NMN++I P ++VSFK S  
Sbjct:   174 VILGKPEQIVTGSKQSYPSSNQFDSGVDNLENPRKYVIWSCNMNSYILPTYIVSFK-SHL 232

Query:   174 VEGHLIRSESQRA-----ISVLTTSSQGLQGHLRLDSSADF 209
             + G + R+ S        +S+L+ S    + +L L S  DF
Sbjct:   233 LRGLIGRARSPCVSFSVLMSILSKSLDAARMNLILTSYDDF 273

GO:0003950 "NAD+ ADP-ribosyltransferase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2100357 SRO4 "similar to RCD one 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 197 (74.4 bits), Expect = 3.0e-20, Sum P(2) = 3.0e-20
 Identities = 47/128 (36%), Positives = 67/128 (52%)

Query:    46 ANVRYAWLATSKGALSTMIMYGLGHCGASTTKSTYGIGVHLAAASCP-DTSASYTDVDEN 104
             A V+Y      K  L  ++MYG  +     +          A   C  D S+S    +E+
Sbjct:   122 ARVKYGCCGVEKEELKAILMYGFSNNALCLSPDN-------APLQCMIDPSSS---CNED 171

Query:   105 GVRHMVLCRVIMGNMEPLFPGTKQFHPSSEDFDSGVDDLQNPRHYIVWNMNMNTHIFPEF 164
             G+  ++  R+IMG  E +   T Q +PSS +FDSGVD L +P  YI+W+ +MNTH+ PEF
Sbjct:   172 GISFLLFSRIIMGKSEVVC-STSQSYPSSMEFDSGVDSLTSPNKYIIWSTHMNTHVLPEF 230

Query:   165 VVSFKFSS 172
             VV  K  S
Sbjct:   231 VVCIKTPS 238

GO:0003950 "NAD+ ADP-ribosyltransferase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

UNIPROTKB|E1BQC5 PARP14 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 173 (66.0 bits), Expect = 1.1e-09, P = 1.1e-09
 Identities = 42/170 (24%), Positives = 86/170 (50%)

Query:     4 MGMSPSSGVDILDVQRCSSASLLARFELFQKQLEITNKCRGDANVRYAWLATSKGALSTM 63
             +  SPS  + I  ++R  + SL   +++  K+ ++ +K   ++N ++ +  TS  +L+ +
Sbjct:  1470 LNTSPSLNLKIEKIERVQNPSLWKAYQI--KKCQMDDKNGNNSNEKFLFHGTSAESLTFI 1527

Query:    64 IMYGLGHCGASTTKSTYGIGVHLAAASCPDTSASYTDVDENGVRHMVLCRVIMGNMEP-- 121
               +G     A    + YG G + A  +    + +Y+  D NG +HM L RV++G      
Sbjct:  1528 NNHGFNRSYAGMHAAQYGNGTYFAVNASYSANDTYSKPDANGKKHMYLARVLVGQYSQGT 1587

Query:   122 ---LFPGTKQFHPSSEDFDSGVDDLQNPRHYIVWNMNMNTHIFPEFVVSF 168
                + P  K    + + FDS  D++ NP  +I++N   +   +PE++++F
Sbjct:  1588 QGAITPAAKNVGNTVDLFDSSTDNVNNPSMFIIFN---DIQAYPEYLITF 1634

GO:0003950 "NAD+ ADP-ribosyltransferase activity" evidence=IEA

UNIPROTKB|F1PEU2 PARP15 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 142 (55.0 bits), Expect = 1.1e-06, P = 1.1e-06
 Identities = 37/158 (23%), Positives = 78/158 (49%)

Query:    17 VQRCSSASLLARFELFQKQLEITNKCRGDANVRYAWLATSKGALSTMIMYGLGHCGASTT 76
             ++R  +  L   +++ +K ++I N  R   N R  +  T   ++  +  +G     A   
Sbjct:   533 IERIQNVCLWQSYQIKKKHMDIKNGYRD--NERVLFHGTDADSVPYVNQHGFNRSYAGKN 590

Query:    77 KSTYGIGVHLAAASCPDTSASYTDVDENGVRHMVLCRVI-----MGNMEPLFPGTKQFHP 131
              + YG G + A  +    +  Y+  D NG +H+ + RV+     +G+   + P +K  H 
Sbjct:   591 AAAYGKGTYFAVDARYSANDIYSRPDSNGRKHIYVVRVLTGVYTLGHAGLVTPPSKNPHN 650

Query:   132 SSEDFDSGVDDLQNPRHYIVWNMNMNTHIFPEFVVSFK 169
              ++ FDS  +D Q+P  ++V++ N     +PE++++F+
Sbjct:   651 PTDLFDSVTNDTQHPNLFVVFSDNQ---AYPEYLITFR 685

GO:0003950 "NAD+ ADP-ribosyltransferase activity" evidence=IEA

UNIPROTKB|B7ZL48 PARP15 "Poly [ADP-ribose] polymerase 15" [Homo sapiens (taxid:9606)]

 Score = 135 (52.6 bits), Expect = 2.6e-06, P = 2.6e-06
 Identities = 37/164 (22%), Positives = 78/164 (47%)

Query:    10 SGVDILDVQRCSSASLLARFELFQKQLEITNKCRGDANVRYAWLATSKGALSTMIMYGLG 69
             S   I  ++R  +A L   +++ ++Q++I N  +   N R  +  T   ++  +  +G  
Sbjct:   215 SSYAIEKIERIQNAFLWQSYQVKKRQMDIKNDHKN--NERLLFHGTDADSVPYVNQHGFN 272

Query:    70 HCGASTTKSTYGIGVHLAAASCPDTSASYTDVDENGVRHMVLCRVIMGNMEP-----LFP 124
                A     +YG G + A  +      +Y+  D NG +HM + RV+ G         + P
Sbjct:   273 RSCAGKNAVSYGKGTYFAVDASYSAKDTYSKPDSNGRKHMYVVRVLTGVFTKGRAGLVTP 332

Query:   125 GTKQFHPSSEDFDSGVDDLQNPRHYIVWNMNMNTHIFPEFVVSF 168
               K  H  ++ FDS  ++ ++P+ ++V+    +   +PE++++F
Sbjct:   333 PPKNPHNPTDLFDSVTNNTRSPKLFVVF---FDNQAYPEYLITF 373

GO:0003950 "NAD+ ADP-ribosyltransferase activity" evidence=IEA

UNIPROTKB|C9J7L3 PARP15 "Poly [ADP-ribose] polymerase 15" [Homo sapiens (taxid:9606)]

 Score = 135 (52.6 bits), Expect = 4.1e-06, P = 4.1e-06
 Identities = 37/164 (22%), Positives = 78/164 (47%)

Query:    10 SGVDILDVQRCSSASLLARFELFQKQLEITNKCRGDANVRYAWLATSKGALSTMIMYGLG 69
             S   I  ++R  +A L   +++ ++Q++I N  +   N R  +  T   ++  +  +G  
Sbjct:   323 SSYAIEKIERIQNAFLWQSYQVKKRQMDIKNDHKN--NERLLFHGTDADSVPYVNQHGFN 380

Query:    70 HCGASTTKSTYGIGVHLAAASCPDTSASYTDVDENGVRHMVLCRVIMGNMEP-----LFP 124
                A     +YG G + A  +      +Y+  D NG +HM + RV+ G         + P
Sbjct:   381 RSCAGKNAVSYGKGTYFAVDASYSAKDTYSKPDSNGRKHMYVVRVLTGVFTKGRAGLVTP 440

Query:   125 GTKQFHPSSEDFDSGVDDLQNPRHYIVWNMNMNTHIFPEFVVSF 168
               K  H  ++ FDS  ++ ++P+ ++V+    +   +PE++++F
Sbjct:   441 PPKNPHNPTDLFDSVTNNTRSPKLFVVF---FDNQAYPEYLITF 481

GO:0003950 "NAD+ ADP-ribosyltransferase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.4.2	LOW CONFIDENCE prediction!
3rd Layer	2.4.2.30	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	324
pfam12174	70	pfam12174, RST, RCD1-SRO-TAF4 (RST) plant domain	4e-27
pfam00644	206	pfam00644, PARP, Poly(ADP-ribose) polymerase catal	9e-07

>gnl|CDD|204843 pfam12174, RST, RCD1-SRO-TAF4 (RST) plant domain

 Score =  100 bits (252), Expect = 4e-27
 Identities = 36/69 (52%), Positives = 50/69 (72%)

Query: 235 RAPKSPWMPFPMLFASISNKVSPKVMEQISNQYELFRAKKVNRDDFVKKLRLIVGDDLLR 294
           R P SPWMPFPMLF+ +S  +   +M  + + YE  R  K++R++FV+KLR+IVGD LL+
Sbjct: 2   RRPSSPWMPFPMLFSILSKHLPSDIMLLLQHHYEKLRRNKISREEFVRKLRIIVGDKLLK 61

Query: 295 STITALQCK 303
           STI+ LQ K
Sbjct: 62  STISKLQQK 70

This domain is found in plant RCD1, SRO and TAF4 proteins, hence its name of RST. It is required for interaction with multiple plant transcription factors. Radical-Induced Cell Death1 (RCD1) is an important regulator of stress and hormonal and developmental responses in Arabidopsis thaliana, as is its closest homologue, SRO1 - Similar To RCD-One1. TBP-Associated Factor 4 (TAF4) and TAF4-b are components of the transcription initiation factor complex TFIID. Length = 70

>gnl|CDD|216040 pfam00644, PARP, Poly(ADP-ribose) polymerase catalytic domain

 Score = 48.5 bits (116), Expect = 9e-07
 Identities = 34/196 (17%), Positives = 63/196 (32%), Gaps = 44/196 (22%)

Query: 4   MGMSPSSGVDILDVQRCSSASLLARFELFQKQLEITNKCRGDANVRYAWLATSKGALSTM 63
              +    + IL++ R        RF+            +   N R  W  +     + +
Sbjct: 26  HDPTHGGPLFILEIFRVQREGEWDRFQPH----------KKLRNRRLLWHGSRLTNFAGI 75

Query: 64  IMYGL--GHCGASTTKSTYGIGVHLAAASCPDTSASYT-DVDENGVRHMVLCRVIMGNME 120
           +  GL      A  T   +G G++ A       SA+Y    + +G   M+L  V +G+M 
Sbjct: 76  LSQGLRIAPPEAPVTGYMFGKGIYFA--DDASKSANYCPTDEAHGSGLMLLSEVALGDMN 133

Query: 121 PLF---------PGTK----------QFHPSSEDFDSGV-------DDLQNPRHYIVWNM 154
            L          PG            +     +    G          +     Y+V+N 
Sbjct: 134 ELTKADYAEKLPPGKHSVKGLGKTAPEDFVWLDGVPLGKPVATGYDSSVLLYNEYVVYN- 192

Query: 155 NMNTHIFPEFVVSFKF 170
                + P++++  KF
Sbjct: 193 --VNQVRPKYLLEVKF 206

Poly(ADP-ribose) polymerase catalyzes the covalent attachment of ADP-ribose units from NAD+ to itself and to a limited number of other DNA binding proteins, which decreases their affinity for DNA. Poly(ADP-ribose) polymerase is a regulatory component induced by DNA damage. The carboxyl-terminal region is the most highly conserved region of the protein. Experiments have shown that a carboxyl 40 kDa fragment is still catalytically active. Length = 206

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	324
cd01439	121	TCCD_inducible_PARP_like Poly(ADP-ribose) polymera	100.0
cd01438	223	tankyrase_like Tankyrases interact with the telome	100.0
PF00644	206	PARP: Poly(ADP-ribose) polymerase catalytic domain	99.97
PF12174	70	RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: I	99.97
cd01437	347	parp_like Poly(ADP-ribose) polymerase (parp) catal	99.92
PLN03124	643	poly [ADP-ribose] polymerase; Provisional	99.82
PLN03123	981	poly [ADP-ribose] polymerase; Provisional	99.78
cd01341	137	ADP_ribosyl ADP_ribosylating enzymes catalyze the	99.77
PLN03122	815	Poly [ADP-ribose] polymerase; Provisional	99.71
KOG1037	531	consensus NAD+ ADP-ribosyltransferase Parp, requir	98.2
PF12767	252	SAGA-Tad1: Transcriptional regulator of RNA polII,	92.38
PF12509	165	DUF3715: Protein of unknown function (DUF3715); In	91.72
KOG0034	187	consensus Ca2+/calmodulin-dependent protein phosph	89.89

>cd01439 TCCD_inducible_PARP_like Poly(ADP-ribose) polymerases catalyse the covalent attachment of ADP-ribose units from NAD+ to itself and to a limited number of other DNA binding proteins, which decreases their affinity for DNA

Probab=100.00  E-value=1.7e-35  Score=249.13  Aligned_cols=114  Identities=24%  Similarity=0.470  Sum_probs=101.2

Q ss_pred             EeeecCChhhHHHHHhhcCCCCCCCCCCCcccceeEeCcCCCCcccCCccccCCC--CcEEEEEeeeccCCccccCCC--
Q 020586           50 YAWLATSKGALSTMIMYGLGHCGASTTKSTYGIGVHLAAASCPDTSASYTDVDEN--GVRHMVLCRVIMGNMEPLFPG--  125 (324)
Q Consensus        50 ~lfHGTs~~~i~~I~~~GF~~~~~~~~g~~yG~GIYFAp~~~s~~S~~Y~~~d~~--G~r~mlLcrVllG~~~~v~pg--  125 (324)
                      +|||||+.+++..|+++||+++.++.++++||+|||||+ +++ +|++||..+++  |.++|||||||+|+++...++  
T Consensus         1 ~LfHGt~~~~~~~I~~~GF~~~~~g~~~~~~G~GiYFA~-~~s-~S~~Y~~~~~~~~g~~~mfL~rVl~G~~~~~~~~~~   78 (121)
T cd01439           1 LLFHGTSADAVEAICRHGFDRRFCGKHGTMYGKGSYFAK-NAS-YSHQYSKKSPKADGLKEMFLARVLTGDYTQGHPGYR   78 (121)
T ss_pred             CcccccChhhHHHHHHccCCCccCCCCCCccCCeeeccc-Chh-hhhcccccCcCCCCcEEEEEEEEEecceecCCCccc
Confidence            489999999999999999999998878999999999994 655 59999976665  999999999999999866543  


Q ss_pred             ---CCCCCCCCCCCcccccCCCCCcEEEEEeCCCCccccceeEEEE
Q 020586          126 ---TKQFHPSSEDFDSGVDDLQNPRHYIVWNMNMNTHIFPEFVVSF  168 (324)
Q Consensus       126 ---s~q~~ps~~~yDSvVd~~~np~~yVV~~~~mNtqiyPeYvIty  168 (324)
                         .++..+++++|||+||++.+|++||||+++   ||||||||+|
T Consensus        79 ~pP~~~~~~~~~~yDS~vd~~~~p~~~Vvf~~~---q~yPeYlI~y  121 (121)
T cd01439          79 RPPLKPSGVELDRYDSCVDNVSNPSIFVIFSDV---QAYPEYLITY  121 (121)
T ss_pred             CCCCccCCCCCCCccceeCCCCCCCEEEEEeCC---ccceeEEEEC
Confidence               355567789999999999999999999985   9999999997

Poly(ADP-ribose) polymerase is a regulatory component induced by DNA damage. The carboxyl-terminal region is the most highly conserved region of the protein. 2,3,7,8-Tetrachlorodibenzo-p-dioxin (TCDD) causes pleotropic effects in mammalian species through modulating gene expression. TCCD indicible PARP (TiPARP) is a target of TCDD that may contribute to multiple responses to TCDD by modulating protein function through poly ADP-ribosylation

>cd01438 tankyrase_like Tankyrases interact with the telomere reverse transcriptase complex (TERT)

Probab=100.00  E-value=1.8e-34  Score=264.70  Aligned_cols=152  Identities=18%  Similarity=0.334  Sum_probs=122.8

Q ss_pred             CCCccEEEEEEecCHHHHHHHHHHHHHHHHHhccCCCCceEEeeecCChhhHHHHHhhcCCCCCCCCCCCcccceeEeCc
Q 020586            9 SSGVDILDVQRCSSASLLARFELFQKQLEITNKCRGDANVRYAWLATSKGALSTMIMYGLGHCGASTTKSTYGIGVHLAA   88 (324)
Q Consensus         9 ~~~~~I~~I~RV~n~~l~~ry~~fk~~~~~~~k~~g~~Ner~lfHGTs~~~i~~I~~~GF~~~~~~~~g~~yG~GIYFAp   88 (324)
                      |.+.+|++|+||||+.||.+|+.+|++|+.  +.....||++|||||+  .+..|+++|||++.+. .++|||+||||| 
T Consensus        52 ~~~~~I~kI~RIQN~~Lw~~y~~kk~~~~~--~~~~~~ne~~LfHGt~--~~~~I~~~GFd~r~~~-~g~~fGkGiYFA-  125 (223)
T cd01438          52 FNRYNIIRIQKVVNKKLRERYCHRQKEIAE--ENHNHHNERMLFHGSP--FINAIIHKGFDERHAY-IGGMFGAGIYFA-  125 (223)
T ss_pred             cccccEEEEEecCCHHHHHHHHHHHHHHHH--hhCCCcceEEEeecCc--chhHHHHhCCCccccc-cCceeeeeeeec-
Confidence            456899999999999999999999988876  4556789999999998  4679999999998764 589999999999 


Q ss_pred             CCCCcccCCccccCC---------CC-----cEEEEEeeeccCCccccCCCCCCCCCCCCCCcccccCCCC----CcEEE
Q 020586           89 ASCPDTSASYTDVDE---------NG-----VRHMVLCRVIMGNMEPLFPGTKQFHPSSEDFDSGVDDLQN----PRHYI  150 (324)
Q Consensus        89 ~~~s~~S~~Y~~~d~---------~G-----~r~mlLcrVllG~~~~v~pgs~q~~ps~~~yDSvVd~~~n----p~~yV  150 (324)
                      +++++ |++||....         ++     .+.||||||++|++....+..... +.+.+|||+++....    .+|||
T Consensus       126 ~~ask-S~~Y~~~~~~~~~~p~~~~~~~~~~~~~MfLcrVlLGk~~~~~~~~~~~-~~P~G~dSv~g~Ps~~~~~~~EfV  203 (223)
T cd01438         126 ENSSK-SNQYVYGIGGGTGCPTHKDRSCYVCHRQMLFCRVTLGKSFLQFSAMKMA-HAPPGHHSVIGRPSVNGLAYAEYV  203 (223)
T ss_pred             cchhh-hccccccccccccCcccccccccccceeEEEEEEEecceeeccCCcccC-CCCCCCcceEcCCCCCCcccCEEE
Confidence            67775 999975421         11     478999999999987654443222 334589999986432    47999


Q ss_pred             EEeCCCCccccceeEEEEEec
Q 020586          151 VWNMNMNTHIFPEFVVSFKFS  171 (324)
Q Consensus       151 V~~~~mNtqiyPeYvItyk~~  171 (324)
                      ||+++   ||||+|||+|+..
T Consensus       204 Vyd~~---Q~YPeYLI~y~~~  221 (223)
T cd01438         204 IYRGE---QAYPEYLITYQIV  221 (223)
T ss_pred             EECCC---cEeeEEEEEEEee
Confidence            99985   9999999999864

Tankyrase 1 poly-ADP-ribosylates Telomere Repeat Binding Factor 1 (TRF1) while Tankyrase 2 can poly-ADP-ribosylate itself or TRF1. The tankyrases also contain multiple ankyrin repeats that mediate protein-protein interaction (binding TRF1 and insulin-responsive aminopeptidase) and may function as a complex. Overexpression of Tank1 promotes increased telomere length when overexpressed, while overexpressed Tank2 has been shown to promote PARP cleavage- independent cell death (necrosis).

>PF00644 PARP: Poly(ADP-ribose) polymerase catalytic domain; InterPro: IPR012317 Poly(ADP-ribose) polymerases (PARP) are a family of enzymes present in eukaryotes, which catalyze the poly(ADP-ribosyl)ation of a limited number of proteins involved in chromatin architecture, DNA repair, or in DNA metabolism, including PARP itself

Probab=99.97  E-value=3e-32  Score=246.47  Aligned_cols=154  Identities=28%  Similarity=0.503  Sum_probs=124.8

Q ss_pred             CcccCCCCCC--CccEEEEEEecCHHHHHHHHHHHHHHHHHhccCCCCceEEeeecCChhhHHHHHhhcC--CCCCCCCC
Q 020586            1 MFLMGMSPSS--GVDILDVQRCSSASLLARFELFQKQLEITNKCRGDANVRYAWLATSKGALSTMIMYGL--GHCGASTT   76 (324)
Q Consensus         1 ~F~~gm~~~~--~~~I~~I~RV~n~~l~~ry~~fk~~~~~~~k~~g~~Ner~lfHGTs~~~i~~I~~~GF--~~~~~~~~   76 (324)
                      +|.++|++..  +.+|.+|+||+|+.+|++|+.+++          ..|+++|||||+.+++.+|+++||  +.+.++.+
T Consensus        21 ~f~~~~~~~~~~~~~I~~I~~i~~~~~~~~f~~~~~----------~~n~~~L~HGt~~~~~~~I~~~G~~~~~~~~~~~   90 (206)
T PF00644_consen   21 YFKKTWKPVHKYKPKIKKIFRIQNPSLWERFEEKKK----------EGNERLLFHGTSAENICSILRNGFKIDPRKASRN   90 (206)
T ss_dssp             HHHHTSTSTTTEEEEEEEEEEEEEHHHHHHHHHHHH----------SSSEEEEEEEETGGGHHHHHHHSS---TTTSCGG
T ss_pred             HHHhHCCCCCCCCCEEEEEEEEcChhHHHHHHHHHh----------cCCceEEeCCCChhhccchhcCCCccCccccccC
Confidence            3677888755  499999999999999999999976          358999999999999999999999  66667777


Q ss_pred             CCcccceeEeCcCCCCcccCCcccc-CCCCcEEEEEeeeccCCccccCCCCCCCCCCCCCCccccc--------------
Q 020586           77 KSTYGIGVHLAAASCPDTSASYTDV-DENGVRHMVLCRVIMGNMEPLFPGTKQFHPSSEDFDSGVD--------------  141 (324)
Q Consensus        77 g~~yG~GIYFAp~~~s~~S~~Y~~~-d~~G~r~mlLcrVllG~~~~v~pgs~q~~ps~~~yDSvVd--------------  141 (324)
                      |.+||.|||||+ +++ +|+.||.. +.+|.++||||+|++|++..+..... ...++.+|||+.+              
T Consensus        91 g~~fG~GiYfs~-~~s-~s~~Y~~~~~~~g~~~~llc~V~lG~~~~~~~~~~-~~~~~~g~~sv~~~~~~~~~~~~~~~g  167 (206)
T PF00644_consen   91 GGMFGKGIYFSD-NSS-KSAQYSKPSDSNGERFMLLCRVALGKPYELKNDNP-MTSPPPGYDSVKGVGSKTPEDTIDEDG  167 (206)
T ss_dssp             CSTTSSSEEEBS-SHH-HHHTTSTSESSSSEEEEEEEEEEECSEEEESSCCT-GSSGCTTESEEEECESEEEGGEEEETT
T ss_pred             CceeeeEEEeCc-chh-hhcccCCCccCCcceeeeEEEEEeccceeeccCcc-cccccCCcceecCCCccCCccccccCC
Confidence            899999999994 554 69999987 78999999999999999765543322 2233445666432              


Q ss_pred             -------------CCCCCcEEEEEeCCCCccccceeEEEEEe
Q 020586          142 -------------DLQNPRHYIVWNMNMNTHIFPEFVVSFKF  170 (324)
Q Consensus       142 -------------~~~np~~yVV~~~~mNtqiyPeYvItyk~  170 (324)
                                   ...++++||||++   .|+||+|||+|+.
T Consensus       168 ~p~~~~~~~~~~~~~~~~~eyVVy~~---~q~~p~YLi~y~~  206 (206)
T PF00644_consen  168 VPSGKGYVSEYDGSSLNPNEYVVYDN---SQVYPEYLITYKF  206 (206)
T ss_dssp             ETTSSEEESCEESSSSSCSEEEESSG---GGEEEEEEEEEEE
T ss_pred             CCCCCCccCccCCCccCCCEEEEEcc---cceeeEEEEEEEC
Confidence                         2256799999998   5999999999984

PARP, also known as poly(ADP-ribose) synthetase and poly(ADP-ribose) transferase, transfers the ADP-ribose moiety from its substrate, nicotinamide adenine dinucleotide (NAD), to carboxylate groups of aspartic and glutamic residues. Whereas some PARPs might function in genome protection, others appear to play different roles in the cell, including telomere replication and cellular transport. PARP-1 is a multifunctional enzyme. The polypeptide has a highly conserved modular organisation consisting of an N-terminal DNA-binding domain, a central regulating segment, and a C-terminal or F region accommodating the catalytic centre. The F region is composed of two parts: a purely alpha-helical N- terminal domain (alpha-hd), and the mixed alpha/beta C-terminal catalytic domain bearing the putative NAD binding site. Although proteins of the PARP family are related through their PARP catalytic domain, they do not resemble each other outside of that region, but rather, they contain unique domains that distinguish them from each other and hint at their discrete functions. Domains with which the PARP catalytic domain is found associated include zinc fingers, SAP, ankyrin, BRCT, Macro, SAM, WWE and UIM domains [, , ]. The alpha-hd domain is about 130 amino acids in length and consists of an up-up-down-up-down-down motif of helices. It is thought to relay the activation signal issued on binding to damaged DNA [, ]. The PARP catalytic domain is about 230 residues in length. Its core consists of a five-stranded antiparallel beta-sheet and four-stranded mixed beta-sheet. The two sheets are consecutive and are connected via a single pair of hydrogen bonds between two strands that run at an angle of 90 degrees. These central beta-sheets are surrounded by five alpha-helices, three 3(10)-helices, and by a three- and a two-stranded beta-sheet in a 37-residue excursion between two central beta-strands [, ]. The active site, known as the 'PARP signature' is formed by a block of 50 amino acids that is strictly conserved among the vertebrates and highly conserved among all species. The 'PARP signature' is characteristic of all PARP protein family members. It is formed by a segment of conserved amino acid residues formed by a beta-sheet, an alpha-helix, a 3(10)-helix, a beta-sheet, and an alpha-helix [].; GO: 0003950 NAD+ ADP-ribosyltransferase activity; PDB: 2PQF_F 4F0D_A 1PAX_A 1EFY_A 1A26_A 2PAW_A 4PAX_A 3PAX_A 2PAX_A 3P0N_A ....

>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors

Probab=99.97  E-value=6.1e-31  Score=201.57  Aligned_cols=69  Identities=55%  Similarity=1.035  Sum_probs=67.4

Q ss_pred             CCCCCCCccHHHHHHHHhccCChhHHHHHHHHHHHHHhCCCChHHHHHHHHHHhhhHHHHHHHHHHhhh
Q 020586          235 RAPKSPWMPFPMLFASISNKVSPKVMEQISNQYELFRAKKVNRDDFVKKLRLIVGDDLLRSTITALQCK  303 (324)
Q Consensus       235 ~~p~sp~~~F~~L~~~l~~~l~~~~~~~i~~~y~~~k~~kI~r~~~v~~~R~IvGD~lL~~~i~~~~~k  303 (324)
                      |+|+|||||||+||++|+++|||++|++|+++|++||++||||+||||+||.||||+||++||+++|.|
T Consensus         2 ~~P~sp~~~F~~L~~~l~~~l~~~~~~~l~~~Y~~~k~~kIsR~~fvr~lR~IVGD~lL~s~I~~lq~k   70 (70)
T PF12174_consen    2 RRPTSPWMPFPMLFSALSKHLPPSKMDLLQKHYEEFKKKKISREEFVRKLRQIVGDQLLRSAIKSLQQK   70 (70)
T ss_pred             CCCCCCcccHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            569999999999999999999999999999999999999999999999999999999999999999975

>cd01437 parp_like Poly(ADP-ribose) polymerase (parp) catalytic domain catalyses the covalent attachment of ADP-ribose units from NAD+ to itself and to a limited number of other DNA binding proteins, which decreases their affinity for DNA

Probab=99.92  E-value=1.7e-25  Score=218.17  Aligned_cols=153  Identities=19%  Similarity=0.288  Sum_probs=119.7

Q ss_pred             cccCCCC--CCCccEEEEEEecCHHHHHHHHHHHHHHHHHhccCCCCceEEeeecCChhhHHHHHhhcCCCCC--CCCCC
Q 020586            2 FLMGMSP--SSGVDILDVQRCSSASLLARFELFQKQLEITNKCRGDANVRYAWLATSKGALSTMIMYGLGHCG--ASTTK   77 (324)
Q Consensus         2 F~~gm~~--~~~~~I~~I~RV~n~~l~~ry~~fk~~~~~~~k~~g~~Ner~lfHGTs~~~i~~I~~~GF~~~~--~~~~g   77 (324)
                      |..++++  .-+.+|..|+||++...++||+.++          ...|+++|||||+..++.+|+++||+...  ++.+|
T Consensus       157 ~~~t~~~~~~~~~~V~~If~i~r~~e~~~F~~~~----------~~~n~~lLwHGsr~~n~~~Il~~Gl~~~~~~~~~~g  226 (347)
T cd01437         157 LKNTHAPTTEYTVEVQEIFRVEREGETDRFKPFK----------KLGNRKLLWHGSRLTNFVGILSQGLRIAPPEAPVTG  226 (347)
T ss_pred             HHhcCCCCCCcceeEEEEEEecCCCchhhhHHhh----------ccCCeEEEEcCCChhhHHHHHhcCCCcCccccccCC
Confidence            3445544  2348999999999999999998743          23599999999999999999999999865  45678


Q ss_pred             CcccceeEeCcCCCCcccCCccccCC-CCcEEEEEeeeccCCccccCCCCCCCCCCCCCCcccccC--------------
Q 020586           78 STYGIGVHLAAASCPDTSASYTDVDE-NGVRHMVLCRVIMGNMEPLFPGTKQFHPSSEDFDSGVDD--------------  142 (324)
Q Consensus        78 ~~yG~GIYFAp~~~s~~S~~Y~~~d~-~G~r~mlLcrVllG~~~~v~pgs~q~~ps~~~yDSvVd~--------------  142 (324)
                      .|||+||||| ++++ +|++||..+. ++.++||||+|++|++............++.+|||+.+-              
T Consensus       227 ~mfGkGIYFA-d~~s-kS~~Y~~~~~~~~~~~mlLc~V~lG~~~~~~~~~~~~~~~p~g~~Sv~g~G~~~p~~~~~~~~~  304 (347)
T cd01437         227 YMFGKGIYFA-DMFS-KSANYCHASASDPTGLLLLCEVALGKMNELKKADYMAKELPKGKHSVKGLGKTAPDPSEFEIDL  304 (347)
T ss_pred             ccccceEeec-CchH-hhhhhcccCCCCCceEEEEEEEecCceehhccCChhhccCCCCceeeEeccCCCCCchhheecc
Confidence            8999999999 4555 6999998776 789999999999999986643322222245688887541              


Q ss_pred             -------------------CCCCcEEEEEeCCCCccccceeEEEEE
Q 020586          143 -------------------LQNPRHYIVWNMNMNTHIFPEFVVSFK  169 (324)
Q Consensus       143 -------------------~~np~~yVV~~~~mNtqiyPeYvItyk  169 (324)
                                         .-..+|||||+.+   |+.+.|||.+|
T Consensus       305 ~gv~vP~G~~~~~~~~~~~~l~~nEyiVYd~~---Qir~rYLv~vk  347 (347)
T cd01437         305 DGVVVPLGKPVPSGHKTDTSLLYNEYIVYDVA---QVRLKYLLEVK  347 (347)
T ss_pred             CCeEeeCCccccCCcCCCcccccCCeEeechh---HEEEEEEEEeC
Confidence                               0123689999995   99999999875

Poly(ADP-ribose) polymerase is a regulatory component induced by DNA damage. The carboxyl-terminal region is the most highly conserved region of the protein. Experiments have shown that a carboxyl 40 kDa fragment is still catalytically active. Poly(ADP-ribose)-like polymerases (PARPS 1-3, VPARP, tankyrase) catalyze the addition of up to 100 ADP_ribose units from NAD+. PARPs 1 and 2 are localized in the nucleaus, bind DNA, and are activated by DNA damage. VPARP is part of the vault ribonucleoprotein complex. Tankyrases regulates telomere length through interactions with telomere repeat binding factor 1.

>PLN03124 poly [ADP-ribose] polymerase; Provisional

Probab=99.82  E-value=4.6e-20  Score=191.16  Aligned_cols=146  Identities=23%  Similarity=0.334  Sum_probs=110.7

Q ss_pred             ccEEEEEEecCHHHHHHHHHHHHHHHHHhccCCCCceEEeeecCChhhHHHHHhhcCCC--CCCCCCCCcccceeEeCcC
Q 020586           12 VDILDVQRCSSASLLARFELFQKQLEITNKCRGDANVRYAWLATSKGALSTMIMYGLGH--CGASTTKSTYGIGVHLAAA   89 (324)
Q Consensus        12 ~~I~~I~RV~n~~l~~ry~~fk~~~~~~~k~~g~~Ner~lfHGTs~~~i~~I~~~GF~~--~~~~~~g~~yG~GIYFAp~   89 (324)
                      ++|+.|+||++.....||..+++          ..|.++||||++..++.+|+++||..  +.++.+|.|||+|||||  
T Consensus       460 l~V~~If~V~R~~E~~rF~~~~~----------~~Nr~LLWHGSr~~N~~gILs~GLriaPpea~~~GymfGkGIYFA--  527 (643)
T PLN03124        460 LEIVQIFKVSREGEDERFQKFSS----------TKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPSTGYMFGKGVYFA--  527 (643)
T ss_pred             eeEEEEEEeccccchhhHHHhhc----------cCCeEEEEcCCCcccHHHHHhccCccCCcccccccccccceeEec--
Confidence            78999999999998999987642          25899999999999999999999985  34566799999999999  


Q ss_pred             CCCcccCCccccCC-CCcEEEEEeeeccCCccccCCCCCCCCCCCCCCccccc---------------------------
Q 020586           90 SCPDTSASYTDVDE-NGVRHMVLCRVIMGNMEPLFPGTKQFHPSSEDFDSGVD---------------------------  141 (324)
Q Consensus        90 ~~s~~S~~Y~~~d~-~G~r~mlLcrVllG~~~~v~pgs~q~~ps~~~yDSvVd---------------------------  141 (324)
                      +.+.+|++||.... ++.++||||+|++|++.......-.....+.+|||+.+                           
T Consensus       528 d~~skSa~Yc~~~~~~~~g~llLceVaLG~~~el~~~~y~a~~~p~G~~S~kG~G~~~Pdp~~~~~~~dGV~VP~Gk~~~  607 (643)
T PLN03124        528 DMFSKSANYCYASAANPDGVLLLCEVALGDMNELLQADYNANKLPPGKLSTKGVGRTVPDPSEAKTLEDGVVVPLGKPVE  607 (643)
T ss_pred             chhhhhhhhhhccCCCCeeEEEEEEEecCCcchhccCccccccCCCCceeEEeccCCCCCcccceecCCCeEeeCCcccc
Confidence            34558999997654 45789999999999986442211000011235555431                           


Q ss_pred             -----CCCCCcEEEEEeCCCCccccceeEEEEEecC
Q 020586          142 -----DLQNPRHYIVWNMNMNTHIFPEFVVSFKFSS  172 (324)
Q Consensus       142 -----~~~np~~yVV~~~~mNtqiyPeYvItyk~~~  172 (324)
                           ..-..+|||||+..   |+...|||..+...
T Consensus       608 ~~~~~~~L~yNEYIVYd~~---Qvr~rYLv~vkf~~  640 (643)
T PLN03124        608 SPYSKGSLEYNEYIVYNVD---QIRMRYVLQVKFNY  640 (643)
T ss_pred             CCCCCCccccCceEEechh---HeEEEEEEEEEEee
Confidence                 00114799999995   99999999988753

>PLN03123 poly [ADP-ribose] polymerase; Provisional

Probab=99.78  E-value=4.5e-19  Score=191.29  Aligned_cols=145  Identities=20%  Similarity=0.290  Sum_probs=112.4

Q ss_pred             ccEEEEEEecCHHHHHHHHHHHHHHHHHhccCCCCceEEeeecCChhhHHHHHhhcCCC--CCCCCCCCcccceeEeCcC
Q 020586           12 VDILDVQRCSSASLLARFELFQKQLEITNKCRGDANVRYAWLATSKGALSTMIMYGLGH--CGASTTKSTYGIGVHLAAA   89 (324)
Q Consensus        12 ~~I~~I~RV~n~~l~~ry~~fk~~~~~~~k~~g~~Ner~lfHGTs~~~i~~I~~~GF~~--~~~~~~g~~yG~GIYFAp~   89 (324)
                      ++|+.|++|.......||..|++.         ..|.++|||||+..++.+|+.+||..  +.++.+|.|||+|||||  
T Consensus       799 l~v~~IF~v~r~gE~~rf~~~~~~---------~~Nr~LLwHGSr~~N~~gILs~GLriaPpeap~tGymfGkGIYFA--  867 (981)
T PLN03123        799 LELEEVFSLEREGEFDKYAPYKEK---------LKNRMLLWHGSRLTNFVGILSQGLRIAPPEAPATGYMFGKGVYFA--  867 (981)
T ss_pred             ceeeEEEEecccccccchhhHhhc---------CCCceEEEcCCCcccHHHHhhccCccCCccccccCccccceeEec--
Confidence            679999999999999999877532         24899999999999999999999984  45677899999999999  


Q ss_pred             CCCcccCCccccCC-CCcEEEEEeeeccCCccccCCCCCCCCCCCCCCccccc---------------------------
Q 020586           90 SCPDTSASYTDVDE-NGVRHMVLCRVIMGNMEPLFPGTKQFHPSSEDFDSGVD---------------------------  141 (324)
Q Consensus        90 ~~s~~S~~Y~~~d~-~G~r~mlLcrVllG~~~~v~pgs~q~~ps~~~yDSvVd---------------------------  141 (324)
                      +++.+|++||.+.. ++...||||+|++|++........ ...++.+|||+.+                           
T Consensus       868 D~~SKSanYc~~~~~~~~g~llLceVaLG~~~e~~~~~~-~~~~p~g~~S~~g~G~~~Pd~~~~~~~~dgv~vP~Gk~~~  946 (981)
T PLN03123        868 DLVSKSAQYCYTDRKNPVGLMLLSEVALGEIYELKKAKY-MDKPPRGKHSTKGLGKTVPQESEFVKWRDDVVVPCGKPVP  946 (981)
T ss_pred             chhhhhhhhhcccCCCCceEEEEEEEecCChhhhccccc-cccCCCCceeeeecCCCCCCcccceecCCceEeeCCCCcc
Confidence            45668999997654 678899999999999865432111 1112345555421                           


Q ss_pred             -----CCCCCcEEEEEeCCCCccccceeEEEEEec
Q 020586          142 -----DLQNPRHYIVWNMNMNTHIFPEFVVSFKFS  171 (324)
Q Consensus       142 -----~~~np~~yVV~~~~mNtqiyPeYvItyk~~  171 (324)
                           ..-..+|||||+..   |+-..|||..+..
T Consensus       947 ~~~~~~~L~yNEYIVYd~~---Qvr~rYLv~vkf~  978 (981)
T PLN03123        947 SKVKASELMYNEYIVYNTA---QVKLQFLLKVRFK  978 (981)
T ss_pred             CcccCCccccCceEEechh---HEEEEEEEEEEee
Confidence                 00124689999995   9999999988764

>cd01341 ADP_ribosyl ADP_ribosylating enzymes catalyze the transfer of ADP_ribose from NAD+ to substrates

Probab=99.77  E-value=4.2e-19  Score=152.25  Aligned_cols=110  Identities=19%  Similarity=0.286  Sum_probs=86.5

Q ss_pred             EeeecCChhhHHHHHhhcCCCCCCCC--CCCcccceeEeCcCCCCcccCCccccCCCC---------------cEEEEEe
Q 020586           50 YAWLATSKGALSTMIMYGLGHCGAST--TKSTYGIGVHLAAASCPDTSASYTDVDENG---------------VRHMVLC  112 (324)
Q Consensus        50 ~lfHGTs~~~i~~I~~~GF~~~~~~~--~g~~yG~GIYFAp~~~s~~S~~Y~~~d~~G---------------~r~mlLc  112 (324)
                      +|||||+.+++..|+++||+++..+.  ++.+||+||||| ++++ +|++||..+.++               .+.||++
T Consensus         1 ~l~HGs~~~n~~~I~~~Gl~~~~~~~~~~g~~~G~GiYfa-~~~s-~S~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~fl~   78 (137)
T cd01341           1 FLFHGSPPGNVISILKLGLRPASYGVLLNGGMFGKGIYSA-PNIS-KSNGYSVGCDGQHVFQNGKPKVCGRELCVFGFLT   78 (137)
T ss_pred             CccccCCccchHHHhhCCCCCCCccccccccccCceeeec-CChH-HhhhhhcccCCcccccccccccccccccceeEEE
Confidence            48999999999999999999987654  489999999999 4666 599999877653               3446666


Q ss_pred             eeccCCcccc-----CCCCCCCCCCCCCCcccc----cCCCCCcEEEEEeC-CCCcccccee
Q 020586          113 RVIMGNMEPL-----FPGTKQFHPSSEDFDSGV----DDLQNPRHYIVWNM-NMNTHIFPEF  164 (324)
Q Consensus       113 rVllG~~~~v-----~pgs~q~~ps~~~yDSvV----d~~~np~~yVV~~~-~mNtqiyPeY  164 (324)
                      +|++|.....     .|+.....+..+.||+++    |+..+|++||||+. +   |+||||
T Consensus        79 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~e~VV~~~~~---Qv~~~Y  137 (137)
T cd01341          79 LGVMSGATEESSRVLFPRNFRGATGAEVVDLLVAMCRDALLLPREYIIFEPYS---QVSIRY  137 (137)
T ss_pred             EEEeccccccccccccccccCCCCCCeEEEcccccccchhhCCCeEEEecchh---hceecC
Confidence            6666655432     344444445567899999    58889999999998 7   999998

Bacterial toxins are cytoplasmic and catalyze the transfer of a single ADP_ribose unit to eukaryotic elongation factor 2, halting protein synthesis and killing the cell. Poly(ADP-ribose) polymerases (PARPS 1-3, VPARP, tankyrase) catalyze the addition of up to 100 ADP_ribose units from NAD+. PARPs 1 and 2 are localized in the nucleaus, bind DNA, and are activated by DNA damage. VPARP is part of the vault ribonucleoprotein complex. Tankyrases regulates telomere length in part through poy(ADP_ribosylation) of telomere repeat binding factor 1 (TRF1). Poly(ADP-ribose) polymerase catalyses the covalent attachment of ADP-ribose units from NAD+ to itself and to a limited number of other DNA binding proteins, which decreases their affinity for DNA. Poly(ADP-ribose) polymerase is a regulatory component induced by DNA damage. The carboxyl-terminal region is the most highly conserved region o

>PLN03122 Poly [ADP-ribose] polymerase; Provisional

Probab=99.71  E-value=9e-18  Score=178.25  Aligned_cols=145  Identities=16%  Similarity=0.237  Sum_probs=105.9

Q ss_pred             ccEEEEEEecCHHHHHHHHHHHHHHHHHhccCCCCceEEeeecCChhhHHHHHhhcCCC--CCCCCCCCcccceeEeCcC
Q 020586           12 VDILDVQRCSSASLLARFELFQKQLEITNKCRGDANVRYAWLATSKGALSTMIMYGLGH--CGASTTKSTYGIGVHLAAA   89 (324)
Q Consensus        12 ~~I~~I~RV~n~~l~~ry~~fk~~~~~~~k~~g~~Ner~lfHGTs~~~i~~I~~~GF~~--~~~~~~g~~yG~GIYFAp~   89 (324)
                      .+|+.|+||.... ..||..++          ...|.++||||++.+++.+|++.||..  +.++.+|.|||+|||||  
T Consensus       626 l~v~~IF~veR~g-e~rf~~~~----------~l~NR~LLWHGSR~tN~~gILsqGLRIAPPEAPvtGYMFGKGIYFA--  692 (815)
T PLN03122        626 VSVENIFAVESSA-GPSLDEIK----------KLPNKVLLWCGTRSSNLLRHLAKGFLPAVCSLPVPGYMFGKAIVCS--  692 (815)
T ss_pred             eeEeEEEEeccCc-cccchhhc----------CCCCceEEeccchhhhHHHHhhCCCccCCcccCCCCCccCCeeEec--
Confidence            6799999998865 36777553          125999999999999999999999974  56788999999999999  


Q ss_pred             CCCcccCCccccC-CCCcEEEEEeeeccCCc--cccCCC---------C------CCCCCCCCCC----ccc--------
Q 020586           90 SCPDTSASYTDVD-ENGVRHMVLCRVIMGNM--EPLFPG---------T------KQFHPSSEDF----DSG--------  139 (324)
Q Consensus        90 ~~s~~S~~Y~~~d-~~G~r~mlLcrVllG~~--~~v~pg---------s------~q~~ps~~~y----DSv--------  139 (324)
                      |++.+|++||... .+....||||.|++|++  +...+.         .      -...|.+..+    |-+        
T Consensus       693 D~~SKSAnYC~t~~~~~~GlLlLcEVALG~~~~el~~~~~~~~~~~~g~~Stkg~G~~~Pdp~~~~~~~dgV~VP~Gk~~  772 (815)
T PLN03122        693 DAAAEAARYGFTAVDRPEGFLVLAVASLGDEVLELTKPPEDVKSYEEKKVGVKGLGRKKTDESEHFKWRDDITVPCGRLI  772 (815)
T ss_pred             chhhhhhhhhccccCCCcceEEEEHhhcCchHHHhhcCchhhhccCCCCceeeecCCCcCCCccceecCCCeEEeCCCCc
Confidence            5667899999765 35677999999999997  322221         0      0111211111    111        


Q ss_pred             ---c-cCCCCCcEEEEEeCCCCccccceeEEEEEecC
Q 020586          140 ---V-DDLQNPRHYIVWNMNMNTHIFPEFVVSFKFSS  172 (324)
Q Consensus       140 ---V-d~~~np~~yVV~~~~mNtqiyPeYvItyk~~~  172 (324)
                         . +.....++||||+..   ||-..|||..+..-
T Consensus       773 ~~~~~~~~L~yNEYIVYDva---QvrirYL~~vkf~~  806 (815)
T PLN03122        773 PSEHKDSPLEYNEYAVYDPK---QVSIRFLVGVKYEE  806 (815)
T ss_pred             cCCCCCcccccCceEEEchh---HEEEEEEEEEEeec
Confidence               1 111235799999995   99999999988853

>KOG1037 consensus NAD+ ADP-ribosyltransferase Parp, required for poly-ADP ribosylation of nuclear proteins [Transcription; Replication, recombination and repair; Posttranslational modification, protein turnover, chaperones]

Probab=98.20  E-value=4.1e-07  Score=93.93  Aligned_cols=95  Identities=23%  Similarity=0.334  Sum_probs=71.1

Q ss_pred             CCceEEeeecCChhhHHHHHhhcCCCC--CCCCCCCcccceeEeCcCCCCcccCCccccC-CCCcEEEEEeeeccCCccc
Q 020586           45 DANVRYAWLATSKGALSTMIMYGLGHC--GASTTKSTYGIGVHLAAASCPDTSASYTDVD-ENGVRHMVLCRVIMGNMEP  121 (324)
Q Consensus        45 ~~Ner~lfHGTs~~~i~~I~~~GF~~~--~~~~~g~~yG~GIYFAp~~~s~~S~~Y~~~d-~~G~r~mlLcrVllG~~~~  121 (324)
                      ..|-+.+|||+...++..|+..|+...  ..+..+.+||.|||||  ++..+|++||... .....+|++|.|++|+.-.
T Consensus       364 ~~~r~llw~gs~~~n~a~~l~~g~~~~~~~~~~~g~~~gkgiyfa--~~~sks~~y~~~~~~k~~~~ll~~~~alg~~~~  441 (531)
T KOG1037|consen  364 LINRQLLWHGSRFGNLAGILSPGLRLAPSEAPVTGYMFGKGIYFA--DAASKSANYCVTMKGKPTGHLLLCDVALGKEQD  441 (531)
T ss_pred             cccccchhcccceeeeeccccCCceecCCCCCceeeccccceEee--eecccccccccccccCchhhhhhhhhhccchhh
Confidence            368899999999999999999998654  3445799999999999  4566899999766 5677899999999999864


Q ss_pred             cCCCCCCCCCCCCCCccccc
Q 020586          122 LFPGTKQFHPSSEDFDSGVD  141 (324)
Q Consensus       122 v~pgs~q~~ps~~~yDSvVd  141 (324)
                      ...........+.++||+.+
T Consensus       442 ~~~~~~~~~~~~~~~~sv~~  461 (531)
T KOG1037|consen  442 LVESIPSLTELPAGKDSVKG  461 (531)
T ss_pred             hhcCCcccccCCCCCcchhh
Confidence            43211111113346777653

>PF12767 SAGA-Tad1: Transcriptional regulator of RNA polII, SAGA, subunit; InterPro: IPR024738 The yeast Spt-Ada-Gcn5-Acetyl (SAGA) transferase complex is a multifunctional coactivator involved in multiple cellular processes [], including regulation of transcription by RNA polymerase II [, ]

Probab=92.38  E-value=0.67  Score=43.62  Aligned_cols=66  Identities=18%  Similarity=0.337  Sum_probs=59.1

Q ss_pred             ccHHHHHHHHhccCChhHHHHHHHHHHHHHhCCCChHHHHHHHHHHhh-hH------HHHHHHHHHhhhcCCc
Q 020586          242 MPFPMLFASISNKVSPKVMEQISNQYELFRAKKVNRDDFVKKLRLIVG-DD------LLRSTITALQCKHGLR  307 (324)
Q Consensus       242 ~~F~~L~~~l~~~l~~~~~~~i~~~y~~~k~~kI~r~~~v~~~R~IvG-D~------lL~~~i~~~~~k~~~~  307 (324)
                      +-...|-..|.+.|++++...=..+...|=.+||||+||-+.++.+.| |+      +|++++.+.+.+.|+.
T Consensus         9 idl~~lk~~l~~~LG~~~~~~Y~~~l~~fl~~klsk~Efd~~~~~~L~~~~~~LHN~li~sIl~na~~~~p~~   81 (252)
T PF12767_consen    9 IDLEELKSQLQKRLGPDRWKKYFQSLKRFLSGKLSKEEFDKECRRILGRENVHLHNQLILSILKNALAKSPPP   81 (252)
T ss_pred             cCHHHHHHHHHHHHChHHHHHHHHHHHHHHHhccCHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHhhcCCCc
Confidence            566779999999999999999999999999999999999999999999 54      7899999997777753

It is formed of five major modular subunits and shows a high degree of structural conservation to human TFTC and STAGA []. This entry represents Ada1 (known as Tada1 in higher eukaryotes), one of the subunits that constitute the SAGA core. It also functions as a component of the SALSA and SLIK complexes. ; GO: 0070461 SAGA-type complex

>PF12509 DUF3715: Protein of unknown function (DUF3715); InterPro: IPR022188 This domain family is found in eukaryotes, and is approximately 170 amino acids in length

Probab=91.72  E-value=0.5  Score=42.06  Aligned_cols=119  Identities=14%  Similarity=0.262  Sum_probs=74.7

Q ss_pred             ecCHHHHHHHHHHHHHHHHHhccCCCCceEEeeecCCh-hhHHHHHhhcCCCCCCCCCCCcccc---eeEeCcCCCCccc
Q 020586           20 CSSASLLARFELFQKQLEITNKCRGDANVRYAWLATSK-GALSTMIMYGLGHCGASTTKSTYGI---GVHLAAASCPDTS   95 (324)
Q Consensus        20 V~n~~l~~ry~~fk~~~~~~~k~~g~~Ner~lfHGTs~-~~i~~I~~~GF~~~~~~~~g~~yG~---GIYFAp~~~s~~S   95 (324)
                      |.|..|...|..++..+.........--+.+.|.-... ..+..|+..|+.....  .....|+   |+|++.  .+...
T Consensus         1 i~n~~Ls~efse~~~~~~~~~~~~~eL~e~~~fl~~~~~~~~~~v~~~GL~v~~~--k~~~Lg~ps~gv~~~~--~~D~~   76 (165)
T PF12509_consen    1 IHNEALSKEFSEKRSSMKREGRSSSELPENYCFLSKESRSQVTSVCQRGLKVGNQ--KGTILGKPSMGVYLSR--HSDLL   76 (165)
T ss_pred             CCCHHHHHHHhhhhhhhhhcCCChhhhhhhheeeecccchhhHHHHhcccccccc--cccccCCCCCCccccc--CCchh
Confidence            56788889999998887642222222235555655544 6778889999987522  3556675   899983  22212


Q ss_pred             CCccccCCCCcEEEEEeeeccCCccccCCCC---CCCCCCCCCCcccccC
Q 020586           96 ASYTDVDENGVRHMVLCRVIMGNMEPLFPGT---KQFHPSSEDFDSGVDD  142 (324)
Q Consensus        96 ~~Y~~~d~~G~r~mlLcrVllG~~~~v~pgs---~q~~ps~~~yDSvVd~  142 (324)
                      .............+++.+|+-|++..+....   +..-++...||+.+..
T Consensus        77 ~~~~~~~~~~~~~ii~~kv~~~k~k~i~~~~~~~~~~~~p~p~~d~h~~~  126 (165)
T PF12509_consen   77 ESQPFICSSANGEIIIFKVLKGKVKKISDSNGSTQSFLDPTPSYDCHVSK  126 (165)
T ss_pred             hcchhhhcCCCCceeEEeeccCcccccccccccccccCCCcccHHHHhhh
Confidence            2221111112346899999999999877655   3445666789998753

>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]

Probab=89.89  E-value=0.65  Score=42.24  Aligned_cols=58  Identities=24%  Similarity=0.406  Sum_probs=44.3

Q ss_pred             ccHHH---HHHHHhccCChh-HHHHHHHHHHHHHhCCCChHHHHHHHHHHhh------hHHHHHHHHH
Q 020586          242 MPFPM---LFASISNKVSPK-VMEQISNQYELFRAKKVNRDDFVKKLRLIVG------DDLLRSTITA  299 (324)
Q Consensus       242 ~~F~~---L~~~l~~~l~~~-~~~~i~~~y~~~k~~kI~r~~~v~~~R~IvG------D~lL~~~i~~  299 (324)
                      +.|..   ++++.++.-++. ++....+.|+.=+.|.|+|+||.+.|+..+|      |.++..++-.
T Consensus        84 v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~  151 (187)
T KOG0034|consen   84 VDFEEFVRLLSVFSPKASKREKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDIVDK  151 (187)
T ss_pred             cCHHHHHHHHhhhcCCccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHH
Confidence            55554   555555555566 8999999999999999999999999999999      4444444443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	324
4f0e_A	200	Human Adp-Ribosyltransferase 7 (Artd7PARP15), CATAL		5e-10
3blj_A	221	Crystal Structure Of Human Poly(adp-ribose) Polymer		5e-10
3goy_A	193	Crystal Structure Of Human Poly(Adp-Ribose) Polymer		1e-05

>pdb|4F0E|A Chain A, Human Adp-Ribosyltransferase 7 (Artd7PARP15), CATALYTIC DOMAIN IN Complex With Sto1102 Length = 200

Iteration: 1
 Score = 61.6 bits (148), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 37/164 (22%), Positives = 78/164 (47%), Gaps = 10/164 (6%)
Query: 10  SGVDILDVQRCSSASLLARFELFQKQLEITNKCRGDANVRYAWLATSKGALSTMIMYGLG 69
           S   I  ++R  +A L   +++ ++Q++I N  +   N R  +  T   ++  +  +G  
Sbjct: 40  SSYAIEKIERIQNAFLWQSYQVKKRQMDIKNDHKN--NERLLFHGTDADSVPYVNQHGFN 97
Query: 70  HCGASTTKSTYGIGVHLAAASCPDTSASYTDVDENGVRHMVLCRVIMGNMEP-----LFP 124
              A     +YG G + A  +      +Y+  D NG +HM + RV+ G         + P
Sbjct: 98  RSCAGKNAVSYGKGTYFAVDASYSAKDTYSKPDSNGRKHMYVVRVLTGVFTKGRAGLVTP 157
Query: 125 GTKQFHPSSEDFDSGVDDLQNPRHYIVWNMNMNTHIFPEFVVSF 168
             K  H  ++ FDS  ++ ++P+ ++V+    +   +PE++++F
Sbjct: 158 PPKNPHNPTDLFDSVTNNTRSPKLFVVF---FDNQAYPEYLITF 198

>pdb|3BLJ|A Chain A, Crystal Structure Of Human Poly(adp-ribose) Polymerase 15, Catalytic Fragment Length = 221

Iteration: 1
 Score = 61.6 bits (148), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 37/164 (22%), Positives = 78/164 (47%), Gaps = 10/164 (6%)
Query: 10  SGVDILDVQRCSSASLLARFELFQKQLEITNKCRGDANVRYAWLATSKGALSTMIMYGLG 69
           S   I  ++R  +A L   +++ ++Q++I N  +   N R  +  T   ++  +  +G  
Sbjct: 61  SSYAIEKIERIQNAFLWQSYQVKKRQMDIKNDHKN--NERLLFHGTDADSVPYVNQHGFN 118
Query: 70  HCGASTTKSTYGIGVHLAAASCPDTSASYTDVDENGVRHMVLCRVIMGNMEP-----LFP 124
              A     +YG G + A  +      +Y+  D NG +HM + RV+ G         + P
Sbjct: 119 RSCAGKNAVSYGKGTYFAVDASYSAKDTYSKPDSNGRKHMYVVRVLTGVFTKGRAGLVTP 178
Query: 125 GTKQFHPSSEDFDSGVDDLQNPRHYIVWNMNMNTHIFPEFVVSF 168
             K  H  ++ FDS  ++ ++P+ ++V+    +   +PE++++F
Sbjct: 179 PPKNPHNPTDLFDSVTNNTRSPKLFVVF---FDNQAYPEYLITF 219

>pdb|3GOY|A Chain A, Crystal Structure Of Human Poly(Adp-Ribose) Polymerase 14, Catalytic Fragment In Complex With An Inhibitor 3-Aminobenzamide Length = 193

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/161 (19%), Positives = 71/161 (44%), Gaps = 10/161 (6%)
Query: 14  ILDVQRCSSASLLARFELFQKQLEITNKCRGDANVRYAWLATSKGALSTMIMYGLGHCGA 73
           I  ++R  +  L   ++  +K ++  N      N +  +  T  G++  +   G     A
Sbjct: 37  IEKIERIQNPDLWNSYQAKKKTMDAKNG--QTMNEKQLFHGTDAGSVPHVNRNGFNRSYA 94
Query: 74  STTKSTYGIGVHLAAASCPDTSASYTDVDENGVRHMVLCRVIM-----GNMEPLFPGTKQ 128
                 YG G + A  +    + +Y+  D NG +H+   RV+      GN   + P +K 
Sbjct: 95  GKNAVAYGKGTYFAVNANYSANDTYSRPDANGRKHVYYVRVLTGIYTHGNHSLIVPPSKN 154
Query: 129 FHPSSEDFDSGVDDLQNPRHYIVWNMNMNTHIFPEFVVSFK 169
               ++ +D+  D++ +P  ++ +    +   +PE++++F+
Sbjct: 155 PQNPTDLYDTVTDNVHHPSLFVAF---YDYQAYPEYLITFR 192

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	324
3blj_A	221	Poly(ADP-ribose) polymerase 15; PARP, BAL-3, SGC,	6e-33
3smj_A	193	Poly [ADP-ribose] polymerase 14; diphtheria toxin	7e-33
3hkv_A	217	PARP-10, poly [ADP-ribose] polymerase 10; NAD, tra	7e-33
2pqf_A	198	Poly [ADP-ribose] polymerase 12; enzyme-inhibitor	1e-26
2x5y_A	173	Zinc finger CCCH-type antiviral protein 1; antivir	2e-18
3u9h_A	240	Tankyrase-2; protein-ligand complex, diphtheria to	9e-13
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05
3c4h_A	357	Poly(ADP-ribose) polymerase 3; enzyme-inhibitor co	4e-06
1efy_A	350	Poly (ADP-ribose) polymerase; benzimidazole, inhib	8e-06
4dqy_C	506	Poly [ADP-ribose] polymerase 1; PARP, poly(ADP-rib	1e-05
3kjd_A	368	Poly [ADP-ribose] polymerase 2; transferase, enzym	2e-04

>3blj_A Poly(ADP-ribose) polymerase 15; PARP, BAL-3, SGC, structural GE consortium, glycosyltransferase, NAD, nucleus; 2.20A {Homo sapiens} PDB: 3gey_A* Length = 221

 Score =  120 bits (302), Expect = 6e-33
 Identities = 36/165 (21%), Positives = 76/165 (46%), Gaps = 10/165 (6%)

Query: 10  SGVDILDVQRCSSASLLARFELFQKQLEITNKCRGDANVRYAWLATSKGALSTMIMYGLG 69
           S   I  ++R  +A L   +++ ++Q++   K     N R  +  T   ++  +  +G  
Sbjct: 61  SSYAIEKIERIQNAFLWQSYQVKKRQMD--IKNDHKNNERLLFHGTDADSVPYVNQHGFN 118

Query: 70  HCGASTTKSTYGIGVHLAAASCPDTSASYTDVDENGVRHMVLCRVIMG-----NMEPLFP 124
              A     +YG G + A  +      +Y+  D NG +HM + RV+ G         + P
Sbjct: 119 RSCAGKNAVSYGKGTYFAVDASYSAKDTYSKPDSNGRKHMYVVRVLTGVFTKGRAGLVTP 178

Query: 125 GTKQFHPSSEDFDSGVDDLQNPRHYIVWNMNMNTHIFPEFVVSFK 169
             K  H  ++ FDS  ++ ++P+ ++V+    +   +PE++++F 
Sbjct: 179 PPKNPHNPTDLFDSVTNNTRSPKLFVVFF---DNQAYPEYLITFT 220

>3smj_A Poly [ADP-ribose] polymerase 14; diphtheria toxin like fold, transferase, NAD+, ADP-ribosylat transferase-transferase inhibitor complex; HET: FDR; 1.50A {Homo sapiens} PDB: 3goy_A* 3smi_A* 3se2_A* Length = 193

 Score =  119 bits (300), Expect = 7e-33
 Identities = 32/165 (19%), Positives = 72/165 (43%), Gaps = 10/165 (6%)

Query: 10  SGVDILDVQRCSSASLLARFELFQKQLEITNKCRGDANVRYAWLATSKGALSTMIMYGLG 69
           S   I  ++R  +  L   ++  +K ++   K     N +  +  T  G++  +   G  
Sbjct: 33  SHFRIEKIERIQNPDLWNSYQAKKKTMD--AKNGQTMNEKQLFHGTDAGSVPHVNRNGFN 90

Query: 70  HCGASTTKSTYGIGVHLAAASCPDTSASYTDVDENGVRHMVLCRVIMG-----NMEPLFP 124
              A      YG G + A  +    + +Y+  D NG +H+   RV+ G     N   + P
Sbjct: 91  RSYAGKNAVAYGKGTYFAVNANYSANDTYSRPDANGRKHVYYVRVLTGIYTHGNHSLIVP 150

Query: 125 GTKQFHPSSEDFDSGVDDLQNPRHYIVWNMNMNTHIFPEFVVSFK 169
            +K     ++ +D+  D++ +P  ++ +    +   +PE++++F+
Sbjct: 151 PSKNPQNPTDLYDTVTDNVHHPSLFVAFY---DYQAYPEYLITFR 192

>3hkv_A PARP-10, poly [ADP-ribose] polymerase 10; NAD, transferase, structural genomics, structural genomics consortium, SGC, cytoplasm, glycosyltransferase; HET: 3AB; 2.10A {Homo sapiens} Length = 217

 Score =  120 bits (302), Expect = 7e-33
 Identities = 30/176 (17%), Positives = 74/176 (42%), Gaps = 11/176 (6%)

Query: 1   MFLMGMSPS-SGVDILDVQRCSSASLLARFELFQKQLEITNKCRGDANVRYAWLATSKGA 59
            F   +  + S + ++ V+R S   L  ++EL++++L    +C      +  +  T+  A
Sbjct: 29  AFYDTLDAARSSIRVVRVERVSHPLLQQQYELYRERLL--QRCERRPVEQVLYHGTTAPA 86

Query: 60  LSTMIMYGLGHCGASTTKSTYGIGVHLAAASCPDTSASYTDVDENGVRHMVLCRVIMGNM 119
           +  +  +G          + YG GV+ A  +       Y+  + +G + + + RV+ G+ 
Sbjct: 87  VPDICAHGFNRSFCGRNATVYGKGVYFAKRASLSVQDRYSPPNADGHKAVFVARVLTGDY 146

Query: 120 EPLF-----PGTKQFHPSSEDFDSGVDDLQNPRHYIVWNMNMNTHIFPEFVVSFKF 170
                    P  +        +DS +D +  P  +++++   +T   P  +++ + 
Sbjct: 147 GQGRRGLRAPPLRGPGHVLLRYDSAMDCICQPSIFVIFH---DTQALPTHLITCEH 199

>2pqf_A Poly [ADP-ribose] polymerase 12; enzyme-inhibitor complex, catalytic fragment, structural GEN structural genomics consortium, SGC, transferase; HET: GAB CIT; 2.20A {Homo sapiens} Length = 198

 Score =  103 bits (257), Expect = 1e-26
 Identities = 29/167 (17%), Positives = 64/167 (38%), Gaps = 11/167 (6%)

Query: 10  SGVDILDVQRCSSASLLARFELFQKQLEITNKCRGDANVRYAWLATSKGALSTMIMYGLG 69
               +  ++R  + +L   ++  + Q++  N      + R  +  TS   +  +      
Sbjct: 36  PFYFVQKIERVQNLALWEVYQWQKGQMQKQNG-GKAVDERQLFHGTSAIFVDAICQQNFD 94

Query: 70  HCGASTTKSTYGIGVHLAAASCPDTSASYTDVDENGVRHMVLCRVIMGNMEPLFPGTK-- 127
                   ++YG G +   A     S  Y+  D      M L RV++G            
Sbjct: 95  WRVCGVHGTSYGKGSYF--ARDAAYSHHYSKSDTQT-HTMFLARVLVGEFVRGNASFVRP 151

Query: 128 --QFHPSSEDFDSGVDDLQNPRHYIVWNMNMNTHIFPEFVVSFKFSS 172
             +   S+  +DS V+ + +P  ++++       ++PE+V+ +  SS
Sbjct: 152 PAKEGWSNAFYDSCVNSVSDPSIFVIFE---KHQVYPEYVIQYTTSS 195

>2x5y_A Zinc finger CCCH-type antiviral protein 1; antiviral defense, immune system, transferase; 1.05A {Homo sapiens} Length = 173

 Score = 80.1 bits (197), Expect = 2e-18
 Identities = 28/160 (17%), Positives = 60/160 (37%), Gaps = 17/160 (10%)

Query: 10  SGVDILDVQRCSSASLLARFELFQKQLEITNKCRGDANVRYAWLATSKGALSTMIMYGLG 69
               I  +++  ++ LL +F           K +     +  + ATS+  + ++      
Sbjct: 29  KNFKIEKIKKIENSELLDKFTWK--------KSQMKEEGKLLFYATSRAYVESICSNNFD 80

Query: 70  HCGASTTKSTYGIGVHLAAASCPDTSASYTDVDENGVRHMVLCRVIMGNMEPLFPGTKQF 129
                T ++ YG G++ A       S      D      M + +V++G       G   +
Sbjct: 81  SFLHETHENKYGKGIYFA--KDAIYSHKNCPYD-AKNVVMFVAQVLVGKFIE---GNITY 134

Query: 130 HPSSEDFDSGVDDLQNPRHYIVWNMNMNTHIFPEFVVSFK 169
                 FDS VD   NP  ++++       ++P++V+ + 
Sbjct: 135 TSPPPQFDSCVDTRSNPSVFVIFQ---KDQVYPQYVIEYT 171

>3u9h_A Tankyrase-2; protein-ligand complex, diphtheria toxin like fold, transfer ribosylation; HET: SO4; 1.75A {Homo sapiens} PDB: 3kr8_A* 3kr7_A* 3p0n_A* 3p0p_A* 3p0q_A* 3mhj_A* 3u9y_A* 3ua9_A* 4avu_A* 4avw_A* 3mhk_A* 2rf5_A 3udd_A* 3uh2_A* 3uh4_A* 4dvi_A* Length = 240

 Score = 65.9 bits (160), Expect = 9e-13
 Identities = 31/176 (17%), Positives = 63/176 (35%), Gaps = 29/176 (16%)

Query: 12  VDILDVQRCSSASLLARFELFQKQLEITNKCRGDANVRYAWLATSKGALSTMIMYGLGHC 71
            +IL +Q+  +  L  R+   +K++    +    AN R  +  +    ++ +I  G    
Sbjct: 70  YNILKIQKVCNKKLWERYTHRRKEVS--EENHNHANERMLFHGSP--FVNAIIHKGFDE- 124

Query: 72  GASTTKSTYGIGVHLAAASCPDTSASYTDVDENG--------------VRHMVLCRVIMG 117
             +     +G G++ A       S  Y      G               R ++ CRV +G
Sbjct: 125 RHAYIGGMFGAGIYFA--ENSSKSNQYVYGIGGGTGCPVHKDRSCYICHRQLLFCRVTLG 182

Query: 118 NMEPLFPGTKQFHP----SSEDFDSGVDDLQNPRHYIVWNMNMNTHIFPEFVVSFK 169
                F   K  H      S      V+ L     Y+++        +PE++++++
Sbjct: 183 KSFLQFSAMKMAHSPPGHHSVTGRPSVNGL-ALAEYVIYR---GEQAYPEYLITYQ 234

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 50.2 bits (119), Expect = 6e-07
 Identities = 35/271 (12%), Positives = 69/271 (25%), Gaps = 90/271 (33%)

Query: 64  IMYGLGHCGASTTKSTYGIGVHLAAASCPDT-------------SASYTDVDENGVRHMV 110
           ++ G+   G    K+       +A   C                +    +  E  +  + 
Sbjct: 154 LIDGVLGSG----KTW------VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ 203

Query: 111 -LCRVIMGNMEPLFPGTKQFHPSSEDFDSGVDDLQNPRHY-----I---VWNMNMNTHIF 161
            L   I  N       +           + +  L   + Y     +   V N        
Sbjct: 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN-------- 255

Query: 162 PEFVVSFKFSSNVEGHLIRSESQRAISVLTTSSQGLQGHLRLDSSADFGDVSHPVSDSGG 221
            +   +F  S  +   L+ +   R   V    S     H+ LD  +              
Sbjct: 256 AKAWNAFNLSCKI---LLTT---RFKQVTDFLSAATTTHISLDHHSM------------- 296

Query: 222 SQGKAPSTSSSTPRAPKSPWMPFPMLFASISN-----------KVSPKVMEQISNQYELF 270
                    + TP   KS       L     +             +P+ +  I+   E  
Sbjct: 297 ---------TLTPDEVKS-------LLLKYLDCRPQDLPREVLTTNPRRLSIIA---ESI 337

Query: 271 RAKKVNRDDFVKKLRLIVGDDLLRSTITALQ 301
           R   +   D  K +       ++ S++  L+
Sbjct: 338 R-DGLATWDNWKHVNCDKLTTIIESSLNVLE 367

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.3 bits (114), Expect = 2e-06
 Identities = 30/202 (14%), Positives = 54/202 (26%), Gaps = 56/202 (27%)

Query: 12  VDILDVQRCSSASLLAR------FELFQKQLEITNKCRGDANV------RYAWLATSKG- 58
             ++ V +    SL+ +        +    LE+  K   +  +       Y    T    
Sbjct: 403 DVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSD 462

Query: 59  --ALSTMIMYGLGHCGASTTKSTYGIGVHLAAASCPDTSAS----YTDVD--ENGVRHMV 110
                 +  Y   H           IG HL     P+        + D    E  +RH  
Sbjct: 463 DLIPPYLDQYFYSH-----------IGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDS 511

Query: 111 LCRVIMGNMEPLFPGTKQFHPSSEDFDSGVDDLQNPRHYIVWNMNMNTHIFPEFVVSFKF 170
                 G++                       L+  + YI  N      +    +    F
Sbjct: 512 TAWNASGSILNTL-----------------QQLKFYKPYICDNDPKYERLVNAIL---DF 551

Query: 171 SSNVEGHLIRSES----QRAIS 188
              +E +LI S+     + A+ 
Sbjct: 552 LPKIEENLICSKYTDLLRIALM 573

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.8 bits (105), Expect = 3e-05
 Identities = 37/223 (16%), Positives = 66/223 (29%), Gaps = 68/223 (30%)

Query: 119 MEPLFPGTKQFHPSSEDFDSGVDDLQNPRHYIVWNMNMNTHIFPEFVVSFKFSSNVEGHL 178
           M P+    +Q    +  +    D L N           +  +F ++ VS           
Sbjct: 95  MSPIKTEQRQPSMMTRMYIEQRDRLYN-----------DNQVFAKYNVS----------- 132

Query: 179 IRSESQRAISVLTTSSQGLQGHLRLDSSADFGDVSHPVSDSGGSQGK---APSTSSSTPR 235
            R +       L  +   L+    +        +   V    GS GK   A     S   
Sbjct: 133 -RLQ---PYLKLRQALLELRPAKNV--------LIDGV---LGS-GKTWVALDVCLSYKV 176

Query: 236 APKSPWMPFPMLFASISNKVSPK-VMEQISNQYELFRAKKVNRDDFVKKLRLIVGD--DL 292
             K   M F + + ++ N  SP+ V+E +            +R D    ++L +      
Sbjct: 177 QCK---MDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE 233

Query: 293 LRSTITALQCKHGL-----------------RCSVAWTSLQTT 318
           LR  + +   ++ L                  C +    L TT
Sbjct: 234 LRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKI----LLTT 272

>3c4h_A Poly(ADP-ribose) polymerase 3; enzyme-inhibitor complex, catalytic fragment, structural GEN structural genomics consortium, SGC; HET: DRL; 2.10A {Homo sapiens} PDB: 3c49_A* 2pa9_A* 3ce0_A* 3fhb_A* Length = 357

 Score = 47.1 bits (111), Expect = 4e-06
 Identities = 26/144 (18%), Positives = 41/144 (28%), Gaps = 23/144 (15%)

Query: 1   MFLMGMSPSSGVDILDVQRCSSASLLARFELFQKQLEITNKCRGDANVRYAWLATSKGAL 60
                 S      +  + + +      RF+   K            N +  W  T+   +
Sbjct: 167 YLEQTGSNHRCPTLQHIWKVNQEGEEDRFQAHSKL----------GNRKLLWHGTNMAVV 216

Query: 61  STMIMYGL---GHCGASTTKSTYGIGVHLAAASCPDTSASY---TDVDENGVRHMVLCRV 114
           + ++  GL    H G    K  Y        AS    SA Y        + V +M L  V
Sbjct: 217 AAILTSGLRIMPHSGGRVGKGIY-------FASENSKSAGYVIGMKCGAHHVGYMFLGEV 269

Query: 115 IMGNMEPLFPGTKQFHPSSEDFDS 138
            +G    +             FDS
Sbjct: 270 ALGREHHINTDNPSLKSPPPGFDS 293

>1efy_A Poly (ADP-ribose) polymerase; benzimidazole, inhibitor, catalytic fragment, transferase; HET: BZC; 2.20A {Gallus gallus} SCOP: a.41.1.1 d.166.1.2 PDB: 1a26_A* 1pax_A* 2paw_A 2pax_A* 3pax_A* 4pax_A* 2rcw_A* 1uk1_A* 1wok_A* 1uk0_A* 2rd6_A* 3gjw_A* 3gn7_A* 3l3l_A* 3l3m_A* Length = 350

 Score = 45.9 bits (108), Expect = 8e-06
 Identities = 26/173 (15%), Positives = 60/173 (34%), Gaps = 30/173 (17%)

Query: 12  VDILDVQRCSSASLLARFELFQKQLEITNKCRGDANVRYAWLATSKGALSTMIMYGL--G 69
           + ++++ R        R++ F++            N +  W  +     + ++  GL   
Sbjct: 170 LKVVEIFRIEREGESQRYKPFKQL----------HNRQLLWHGSRTTNFAGILSQGLRIA 219

Query: 70  HCGASTTKSTYGIGVHLAAASCPDTSASYTDV-DENGVRHMVLCRVIMGNMEPLFPGTKQ 128
              A  T   +G G++ A       SA+Y      + +  ++L  V +GNM  L   +  
Sbjct: 220 PPEAPVTGYMFGKGIYFA--DMVSKSANYCHTSQADPIGLILLGEVALGNMYELKNASHI 277

Query: 129 FHPSS--------------EDFDSGVDDLQNPRHYIVWNMNMNTH-IFPEFVV 166
                                  + +D ++ P    +     +T  ++ E++V
Sbjct: 278 TKLPKGKHSVKGLGKTAPDPTATTTLDGVEVPLGNGISTGINDTCLLYNEYIV 330

>4dqy_C Poly [ADP-ribose] polymerase 1; PARP, poly(ADP-ribose) polymerase, DNA binding protein, ADP- transferase, PARP-like zinc finger, poly(ADP-ribosyl)ation; HET: DNA; 3.25A {Homo sapiens} PDB: 2cr9_A Length = 506

 Score = 45.7 bits (107), Expect = 1e-05
 Identities = 25/171 (14%), Positives = 58/171 (33%), Gaps = 26/171 (15%)

Query: 12  VDILDVQRCSSASLLARFELFQKQLEITNKCRGDANVRYAWLATSKGALSTMIMYGLGHC 71
           ++++D+ +        R++ F++            N R  W  +     + ++  GL   
Sbjct: 315 LEVIDIFKIEREGECQRYKPFKQL----------HNRRLLWHGSRTTNFAGILSQGLRIA 364

Query: 72  GASTTKSTYGIGVHLAAASCPDTSASYTD-VDENGVRHMVLCRVIMGNMEPLFPGTKQFH 130
                 + Y  G  +  A     SA+Y      + +  ++L  V +GNM  L   +    
Sbjct: 365 PPEAPVTGYMFGKGIYFADMVSKSANYCHTSQGDPIGLILLGEVALGNMYELKHASHISK 424

Query: 131 P--------------SSEDFDSGVDDLQNPRHYIVWNMNMNTHI-FPEFVV 166
                               +  +D +  P    + +   +T + + E++V
Sbjct: 425 LPKGKHSVKGLGKTTPDPSANISLDGVDVPLGTGISSGVNDTSLLYNEYIV 475

>3kjd_A Poly [ADP-ribose] polymerase 2; transferase, enzyme-inhibitor complex, catalytic fragment, S genomics, structural genomics consortium, SGC; HET: 78P; 1.95A {Homo sapiens} PDB: 3kcz_A* 1gs0_A Length = 368

 Score = 41.7 bits (97), Expect = 2e-04
 Identities = 24/125 (19%), Positives = 41/125 (32%), Gaps = 6/125 (4%)

Query: 17  VQRCSSASLLARFELFQKQLEITNKCRGDANVRYAWLATSKGALSTMIMYGL--GHCGAS 74
                + +LL  FE+ +K  E         N    W  +       ++ +GL   H  A 
Sbjct: 182 THSDYTMTLLDLFEV-EKDGEKEAFREDLHNRMLLWHGSRMSNWVGILSHGLRIAHPEAP 240

Query: 75  TTKSTYGIGVHLAAASCPDTSASYTDVDEN-GVRHMVLCRVIMGNMEPLFPGTKQFHPSS 133
            T   +G G++ A       SA+Y           ++L  V +G    L     +     
Sbjct: 241 ITGYMFGKGIYFA--DMSSKSANYCFASRLKNTGLLLLSEVALGQCNELLEANPKAEGLL 298

Query: 134 EDFDS 138
           +   S
Sbjct: 299 QGKHS 303

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	324
3hkv_A	217	PARP-10, poly [ADP-ribose] polymerase 10; NAD, tra	100.0
3smj_A	193	Poly [ADP-ribose] polymerase 14; diphtheria toxin	100.0
3blj_A	221	Poly(ADP-ribose) polymerase 15; PARP, BAL-3, SGC,	100.0
2pqf_A	198	Poly [ADP-ribose] polymerase 12; enzyme-inhibitor	100.0
2x5y_A	173	Zinc finger CCCH-type antiviral protein 1; antivir	100.0
3u9h_A	240	Tankyrase-2; protein-ligand complex, diphtheria to	100.0
1efy_A	350	Poly (ADP-ribose) polymerase; benzimidazole, inhib	99.96
3c4h_A	357	Poly(ADP-ribose) polymerase 3; enzyme-inhibitor co	99.95
3kjd_A	368	Poly [ADP-ribose] polymerase 2; transferase, enzym	99.94
4dqy_C	506	Poly [ADP-ribose] polymerase 1; PARP, poly(ADP-rib	99.94
4f0d_A	277	PARP-16, poly [ADP-ribose] polymerase 16; transfer	99.27

>3hkv_A PARP-10, poly [ADP-ribose] polymerase 10; NAD, transferase, structural genomics, structural genomics consortium, SGC, cytoplasm, glycosyltransferase; HET: 3AB; 2.10A {Homo sapiens}

Probab=100.00  E-value=5.7e-44  Score=326.48  Aligned_cols=166  Identities=19%  Similarity=0.362  Sum_probs=146.1

Q ss_pred             CcccCCCC-CCCccEEEEEEecCHHHHHHHHHHHHHHHHHhccCCCCceEEeeecCChhhHHHHHhhcCCCCCCCCCCCc
Q 020586            1 MFLMGMSP-SSGVDILDVQRCSSASLLARFELFQKQLEITNKCRGDANVRYAWLATSKGALSTMIMYGLGHCGASTTKST   79 (324)
Q Consensus         1 ~F~~gm~~-~~~~~I~~I~RV~n~~l~~ry~~fk~~~~~~~k~~g~~Ner~lfHGTs~~~i~~I~~~GF~~~~~~~~g~~   79 (324)
                      +|.++|+. ..+.+|++|+||+|+.+|+||+.+|++|+.  +..+.+||++|||||+.+++..||++||+++.++.++++
T Consensus        29 ~F~~t~~~~~~~~~I~~I~RIqn~~l~~~f~~~k~~m~~--k~~~~~ne~~LfHGt~~~~~~~I~~~GF~~~~~g~~g~~  106 (217)
T 3hkv_A           29 AFYDTLDAARSSIRVVRVERVSHPLLQQQYELYRERLLQ--RCERRPVEQVLYHGTTAPAVPDICAHGFNRSFCGRNATV  106 (217)
T ss_dssp             HHHHTTGGGGGTEEEEEEEEECCHHHHHHHHHHHHHHHH--HCCSSCSEEEEEEEECGGGHHHHHHHCSCTTTSCCCCCT
T ss_pred             HHHhhcCCcCCCceEEEEEEECChhHHHHHHHHHHHHHH--hcCCCCceEEEEeCCCHHHHHHHHhcCCcccccCcchhc
Confidence            37788876 346899999999999999999999999886  456778999999999999999999999999998888999


Q ss_pred             ccceeEeCcCCCCcccC--CccccCCCCcEEEEEeeeccCCccc-----cCCCCCCCCCCCCCCcccccCCCCCcEEEEE
Q 020586           80 YGIGVHLAAASCPDTSA--SYTDVDENGVRHMVLCRVIMGNMEP-----LFPGTKQFHPSSEDFDSGVDDLQNPRHYIVW  152 (324)
Q Consensus        80 yG~GIYFAp~~~s~~S~--~Y~~~d~~G~r~mlLcrVllG~~~~-----v~pgs~q~~ps~~~yDSvVd~~~np~~yVV~  152 (324)
                      ||+||||| .++++ |+  .||.++++|.++|||||||+|+++.     +.||+++..++.++|||+||++.+|++||||
T Consensus       107 ~G~GiYFA-~~~s~-S~~~~Y~~~~~~g~~~m~lcrVl~G~~~~g~~~~~~PP~~~~~~~~~~yDSvvd~~~np~~~VVf  184 (217)
T 3hkv_A          107 YGKGVYFA-KRASL-SVQDRYSPPNADGHKAVFVARVLTGDYGQGRRGLRAPPLRGPGHVLLRYDSAMDCICQPSIFVIF  184 (217)
T ss_dssp             TCSSEEEE-SSHHH-HTSTTTSCCCTTSEEEEEEEEEECCSEEECCTTCSSSCBCCTTCSSSBCSEEESCSSSCCEEEEC
T ss_pred             cccceecc-CCccc-ccccccccccCCCceEEEEEEEEccccccCCCccCCCCCCccCCCCCceeEEECCCCCCCEEEEE
Confidence            99999999 46554 64  7999999999999999999999874     4566666566678999999999999999999


Q ss_pred             eCCCCccccceeEEEEEecCC
Q 020586          153 NMNMNTHIFPEFVVSFKFSSN  173 (324)
Q Consensus       153 ~~~mNtqiyPeYvItyk~~~~  173 (324)
                      ++   +||||||||+|+.++.
T Consensus       185 ~~---~qiyPeYLI~y~~~~~  202 (217)
T 3hkv_A          185 HD---TQALPTHLITCEHVPR  202 (217)
T ss_dssp             CT---TSEEEEEEEEEEECC-
T ss_pred             cC---CcCceeEEEEEecCCC
Confidence            97   5999999999999875

>3smj_A Poly [ADP-ribose] polymerase 14; diphtheria toxin like fold, transferase, NAD+, ADP-ribosylat transferase-transferase inhibitor complex; HET: FDR; 1.50A {Homo sapiens} PDB: 3goy_A* 3smi_A* 3se2_A* 4f1l_A* 4f1q_A*

Probab=100.00  E-value=2.6e-43  Score=316.51  Aligned_cols=159  Identities=21%  Similarity=0.399  Sum_probs=140.6

Q ss_pred             cccCCCCCCCccEEEEEEecCHHHHHHHHHHHHHHHHHhccCCCCceEEeeecCChhhHHHHHhhcCCCCCCCCCCCccc
Q 020586            2 FLMGMSPSSGVDILDVQRCSSASLLARFELFQKQLEITNKCRGDANVRYAWLATSKGALSTMIMYGLGHCGASTTKSTYG   81 (324)
Q Consensus         2 F~~gm~~~~~~~I~~I~RV~n~~l~~ry~~fk~~~~~~~k~~g~~Ner~lfHGTs~~~i~~I~~~GF~~~~~~~~g~~yG   81 (324)
                      |.++|   ++.+|++|+||+|+.+|+||+.+|++|+.  +..+.+||++|||||+.++++.|+++||+++.++.++++||
T Consensus        28 f~~t~---~~~~I~~I~rI~n~~l~~~f~~~k~~~~~--k~~~~~ne~~L~HGt~~~~~~~I~~~Gf~~~~~~~~~~~~G  102 (193)
T 3smj_A           28 FNQTC---SHFRIEKIERIQNPDLWNSYQAKKKTMDA--KNGQTMNEKQLFHGTDAGSVPHVNRNGFNRSYAGKNAVAYG  102 (193)
T ss_dssp             HHHHH---TTSEEEEEEEEECHHHHHHHHHHHHHHHH--HSTTCCCEEEEEEEECGGGHHHHHHHTTCCCCTTGGGSSSC
T ss_pred             HHhhC---CCCeEEEEEEECCHHHHHHHHHHHHHHHH--hcCCCCCeEEEEeCCCHHHHHHHHHcCCCCccCCCCccccC
Confidence            45555   45899999999999999999999999876  45677899999999999999999999999998887899999


Q ss_pred             ceeEeCcCCCCcccCC--ccccCCCCcEEEEEeeeccCCcc-----ccCCCCCCCCCCCCCCcccccCCCCCcEEEEEeC
Q 020586           82 IGVHLAAASCPDTSAS--YTDVDENGVRHMVLCRVIMGNME-----PLFPGTKQFHPSSEDFDSGVDDLQNPRHYIVWNM  154 (324)
Q Consensus        82 ~GIYFAp~~~s~~S~~--Y~~~d~~G~r~mlLcrVllG~~~-----~v~pgs~q~~ps~~~yDSvVd~~~np~~yVV~~~  154 (324)
                      +|||||+ +++ +|++  ||.++++|.++||||||++|++.     .+.||+++..|+.++|||+||++.+|++||||++
T Consensus       103 ~GiYfa~-~~s-~S~~~~y~~~~~~g~~~mllcrV~~G~~~~g~~~~~~pP~~~~~~~~~~yDSvv~~~~~p~~~VVf~~  180 (193)
T 3smj_A          103 KGTYFAV-NAN-YSANDTYSRPDANGRKHVYYVRVLTGIYTHGNHSLIVPPSKNPQNPTDLYDTVTDNVHHPSLFVAFYD  180 (193)
T ss_dssp             CCEEEES-SHH-HHTSTTTSCCCTTSCEEEEEEEEECCSEEECCSSCCSCCBSCTTSTTCBCSEEESCSSSCSEEEECST
T ss_pred             CeEEecC-Ccc-hhcCccccCCCCCCcEEEEEEEEEecccccCCCccCCCCCccCCCCCCCccceeCCCCCCCEEEEEeC
Confidence            9999994 655 5887  88889999999999999999875     4467777767778899999999999999999998


Q ss_pred             CCCccccceeEEEEEe
Q 020586          155 NMNTHIFPEFVVSFKF  170 (324)
Q Consensus       155 ~mNtqiyPeYvItyk~  170 (324)
                      +   ||||+|||+|+.
T Consensus       181 ~---qiyP~YlI~y~~  193 (193)
T 3smj_A          181 Y---QAYPEYLITFRK  193 (193)
T ss_dssp             T---CEEEEEEEEEEC
T ss_pred             C---ceeeEEEEEEeC
Confidence            4   999999999983

>3blj_A Poly(ADP-ribose) polymerase 15; PARP, BAL-3, SGC, structural GE consortium, glycosyltransferase, NAD, nucleus; 2.20A {Homo sapiens} PDB: 3gey_A*

Probab=100.00  E-value=4.8e-41  Score=307.44  Aligned_cols=159  Identities=26%  Similarity=0.448  Sum_probs=136.1

Q ss_pred             cccCCCCCCCccEEEEEEecCHHHHHHHHHHHHHHHHHhccCCCCceEEeeecCChhhHHHHHhhcCCCCCCCCCCCccc
Q 020586            2 FLMGMSPSSGVDILDVQRCSSASLLARFELFQKQLEITNKCRGDANVRYAWLATSKGALSTMIMYGLGHCGASTTKSTYG   81 (324)
Q Consensus         2 F~~gm~~~~~~~I~~I~RV~n~~l~~ry~~fk~~~~~~~k~~g~~Ner~lfHGTs~~~i~~I~~~GF~~~~~~~~g~~yG   81 (324)
                      |.++|+   ..+|++|+||+|+.+|+||+.+|++|+.  ++.+++||++|||||+.++++.|+++||++++++.++++||
T Consensus        56 f~~t~~---~~~I~~I~rV~n~~l~~~f~~~k~~~~~--k~~~~~ne~lLfHGt~~~~~~~I~~~Gf~~~~a~~~g~~~G  130 (221)
T 3blj_A           56 FTRTCS---SYAIEKIERIQNAFLWQSYQVKKRQMDI--KNDHKNNERLLFHGTDADSVPYVNQHGFNRSCAGKNAVSYG  130 (221)
T ss_dssp             HHHHHT---TSEEEEEEEEEEHHHHHHHHHHHHHHHH--HSSSCCCEEEEEEEECGGGHHHHHHHCCCTTTC-----CCC
T ss_pred             HHhhCC---CCEEEEEEEEcChhHHHHHHHHHHHHHH--hcCCCCceEEEeccCChHHHHHHHHhCCCCcccCCCCCccC
Confidence            555663   4799999999999999999999998875  56678899999999999999999999999998887899999


Q ss_pred             ceeEeCcCCCCcccCC--ccccCCCCcEEEEEeeeccCCcc-----ccCCCCCCCCCCCCCCcccccCCCCCcEEEEEeC
Q 020586           82 IGVHLAAASCPDTSAS--YTDVDENGVRHMVLCRVIMGNME-----PLFPGTKQFHPSSEDFDSGVDDLQNPRHYIVWNM  154 (324)
Q Consensus        82 ~GIYFAp~~~s~~S~~--Y~~~d~~G~r~mlLcrVllG~~~-----~v~pgs~q~~ps~~~yDSvVd~~~np~~yVV~~~  154 (324)
                      +|||||+ +++ +|++  ||.++++|.++||||||++|++.     .+.||+++..|+.++|||+||+..+|++||||++
T Consensus       131 ~GiYfa~-~~s-~S~~~~Y~~~~~~g~~~mllcrV~~G~~~~g~~~~~~pp~~~~~~~~~~yDSvv~~~~~~~e~VVy~~  208 (221)
T 3blj_A          131 KGTYFAV-DAS-YSAKDTYSKPDSNGRKHMYVVRVLTGVFTKGRAGLVTPPPKNPHNPTDLFDSVTNNTRSPKLFVVFFD  208 (221)
T ss_dssp             SSEEEES-SHH-HHHSTTTSCCCTTSCEEEEEEEEECCSEEECCTTCSSCCBSSTTSTTSBCSEEESCSSSCSEEEECST
T ss_pred             CeEECCc-chh-hhcCcccccCCCCCcEEEEEEEEEeCCccCCChhccCCCcccCCCCCCCCCccccCCCCCCEEEEEcC
Confidence            9999994 655 5776  99999999999999999999764     4566777766778899999999999999999999


Q ss_pred             CCCccccceeEEEEEe
Q 020586          155 NMNTHIFPEFVVSFKF  170 (324)
Q Consensus       155 ~mNtqiyPeYvItyk~  170 (324)
                      +   ||||+|||+|+.
T Consensus       209 ~---qiyP~YlI~y~~  221 (221)
T 3blj_A          209 N---QAYPEYLITFTA  221 (221)
T ss_dssp             T---SEEEEEEEEEEC
T ss_pred             C---eEeeeEEEEEEC
Confidence            6   999999999984

>2pqf_A Poly [ADP-ribose] polymerase 12; enzyme-inhibitor complex, catalytic fragment, structural GEN structural genomics consortium, SGC, transferase; HET: GAB CIT; 2.20A {Homo sapiens}

Probab=100.00  E-value=4.8e-40  Score=295.84  Aligned_cols=159  Identities=20%  Similarity=0.338  Sum_probs=134.7

Q ss_pred             cccCCCCCCCccEEEEEEecCHHHHHHHHHHHHHHHHHhccCCC-CceEEeeecCChhhHHHHHhhcCCCCCCCCCCCcc
Q 020586            2 FLMGMSPSSGVDILDVQRCSSASLLARFELFQKQLEITNKCRGD-ANVRYAWLATSKGALSTMIMYGLGHCGASTTKSTY   80 (324)
Q Consensus         2 F~~gm~~~~~~~I~~I~RV~n~~l~~ry~~fk~~~~~~~k~~g~-~Ner~lfHGTs~~~i~~I~~~GF~~~~~~~~g~~y   80 (324)
                      |.++|+   +.+|++|+||+|+.+|+||+.+|++|+.  +..+. +||++|||||+.++++.|+++||+++.++.++++|
T Consensus        31 f~~t~~---~~~I~~I~rv~n~~l~~~f~~~k~~~~~--~~~~~~~ne~~LfHGt~~~~~~~I~~~Gf~~~~~~~~g~~~  105 (198)
T 2pqf_A           31 FNRTLP---FYFVQKIERVQNLALWEVYQWQKGQMQK--QNGGKAVDERQLFHGTSAIFVDAICQQNFDWRVCGVHGTSY  105 (198)
T ss_dssp             HHTTCT---TSEEEEEEEEECHHHHHHHHHHHHHHHH--TTTTCCCCEEEEEEECCGGGHHHHHHHCCCTTTTCCCSSCS
T ss_pred             HHhhCC---CCEEEEEEEeCCHHHHHHHHHHHHHHHH--hcCCCCcceEEEEecCCHHHHHHHHHhCCCCcccCCCCCcc
Confidence            566664   5799999999999999999999998875  33443 69999999999999999999999999888789999


Q ss_pred             cceeEeCcCCCCcccCCccccCCCCcEEEEEeeeccCCcccc-----CCCCCCCCCCCCCCcccccCCCCCcEEEEEeCC
Q 020586           81 GIGVHLAAASCPDTSASYTDVDENGVRHMVLCRVIMGNMEPL-----FPGTKQFHPSSEDFDSGVDDLQNPRHYIVWNMN  155 (324)
Q Consensus        81 G~GIYFAp~~~s~~S~~Y~~~d~~G~r~mlLcrVllG~~~~v-----~pgs~q~~ps~~~yDSvVd~~~np~~yVV~~~~  155 (324)
                      |+||||| ++++ +|++||..++ |.++||||||++|+++..     .||.+. .++++.|||+||++.+|++||||++ 
T Consensus       106 G~GiYfa-~~~s-~S~~Y~~~~~-~~~~m~lcrV~~G~~~~~~~~~~~pp~~~-~~~~~~yDSvv~~~~~~~e~VVy~~-  180 (198)
T 2pqf_A          106 GKGSYFA-RDAA-YSHHYSKSDT-QTHTMFLARVLVGEFVRGNASFVRPPAKE-GWSNAFYDSCVNSVSDPSIFVIFEK-  180 (198)
T ss_dssp             CSSEEEE-SSHH-HHHTTCCCSS-SEEEEEEEEEECCSEEECCTTCSSCCBCS-CC--CBCSEEESCSSSCCEEEESCG-
T ss_pred             cCeEECc-CCcc-hhhhcccCCC-CceEEEEEEEecCCcccCCccccCCCCCC-CCCCCCcccCcCCCCCCCEEEEECC-
Confidence            9999999 4655 5999998887 899999999999998743     222221 1345679999999999999999997 


Q ss_pred             CCccccceeEEEEEecC
Q 020586          156 MNTHIFPEFVVSFKFSS  172 (324)
Q Consensus       156 mNtqiyPeYvItyk~~~  172 (324)
                        .||||+|||+|+.+.
T Consensus       181 --~qiyP~YlI~y~~~~  195 (198)
T 2pqf_A          181 --HQVYPEYVIQYTTSS  195 (198)
T ss_dssp             --GGEEEEEEEEEESCC
T ss_pred             --CcEeeEEEEEEEcCC
Confidence              599999999999875

>2x5y_A Zinc finger CCCH-type antiviral protein 1; antiviral defense, immune system, transferase; 1.05A {Homo sapiens}

Probab=100.00  E-value=1.1e-37  Score=274.92  Aligned_cols=149  Identities=19%  Similarity=0.336  Sum_probs=127.5

Q ss_pred             cccCCCCCCCccEEEEEEecCHHHHHHHHHHHHHHHHHhccCCCCceEEeeecCChhhHHHHHhhcCCCCCCCCCCCccc
Q 020586            2 FLMGMSPSSGVDILDVQRCSSASLLARFELFQKQLEITNKCRGDANVRYAWLATSKGALSTMIMYGLGHCGASTTKSTYG   81 (324)
Q Consensus         2 F~~gm~~~~~~~I~~I~RV~n~~l~~ry~~fk~~~~~~~k~~g~~Ner~lfHGTs~~~i~~I~~~GF~~~~~~~~g~~yG   81 (324)
                      |.++|   ++.+|++|+||+|+.+|+||+.+|++|+.        |+++|||||+.++++.|+++||+++.++.++++||
T Consensus        24 f~~t~---~~~~I~~I~rv~n~~~~~~f~~~k~~~~~--------n~~~l~HGt~~~~~~~I~~~Gf~~~~~~~~g~~~G   92 (173)
T 2x5y_A           24 FKASM---KNFKIEKIKKIENSELLDKFTWKKSQMKE--------EGKLLFYATSRAYVESICSNNFDSFLHETHENKYG   92 (173)
T ss_dssp             HHTTC---TTEEEEEEEEEECHHHHHHHHHHHHHHTC--------CCEEEEEEEEGGGHHHHHHHCCCHHHHCCSCSSSC
T ss_pred             HHhHC---CCCEEeEEEEECCHHHHHHHHHHHHHHhh--------CcEEEEecCCcccHHHHHHhCCCCcccCCCcCCcc
Confidence            56666   46899999999999999999999987742        99999999999999999999999877666899999


Q ss_pred             ceeEeCcCCCCcccCCccccCCCCcEEEEEeeeccCCccccCCCCCCCCCCCCCCcccccCCCCCcEEEEEeCCCCcccc
Q 020586           82 IGVHLAAASCPDTSASYTDVDENGVRHMVLCRVIMGNMEPLFPGTKQFHPSSEDFDSGVDDLQNPRHYIVWNMNMNTHIF  161 (324)
Q Consensus        82 ~GIYFAp~~~s~~S~~Y~~~d~~G~r~mlLcrVllG~~~~v~pgs~q~~ps~~~yDSvVd~~~np~~yVV~~~~mNtqiy  161 (324)
                      +|||||+ +++ +|++||.++. +.++||||||++|++....+.  ... ++.+|||++|+..+|++||||++   .|+|
T Consensus        93 ~GiYfa~-~~s-~s~~Y~~~~~-~~~~m~lc~V~~G~~~~~~~~--~~~-pp~~ydSv~~~~~~~~e~VV~~~---~q~~  163 (173)
T 2x5y_A           93 KGIYFAK-DAI-YSHKNCPYDA-KNVVMFVAQVLVGKFIEGNIT--YTS-PPPQFDSCVDTRSNPSVFVIFQK---DQVY  163 (173)
T ss_dssp             SSEEEES-SHH-HHHHHCCSCG-GGEEEEEEEECCCSEEECCTT--CSS-CCTTCCEEESCSSSCCEEEECCG---GGEE
T ss_pred             CeEECCC-Chh-hHhhcCCCCC-CCeEEEEEEEecCccccCCcc--cCC-CCCCCCceECCCCCCCEEEEEeC---CeEe
Confidence            9999994 554 6999998877 569999999999997643322  222 34589999999999999999998   5999


Q ss_pred             ceeEEEEEe
Q 020586          162 PEFVVSFKF  170 (324)
Q Consensus       162 PeYvItyk~  170 (324)
                      |+|||+|+.
T Consensus       164 P~YlI~y~~  172 (173)
T 2x5y_A          164 PQYVIEYTE  172 (173)
T ss_dssp             EEEEEEEEE
T ss_pred             EEEEEEEeC
Confidence            999999985

>3u9h_A Tankyrase-2; protein-ligand complex, diphtheria toxin like fold, transfer ribosylation; HET: SO4; 1.75A {Homo sapiens} PDB: 3kr8_A* 3kr7_A* 3p0n_A* 3p0p_A* 3p0q_A* 3mhj_A* 3u9y_A* 3ua9_A* 4avu_A* 4avw_A* 3mhk_A* 2rf5_A 3udd_A* 3uh2_A* 3uh4_A* 4dvi_A* 4hlh_A* 4hki_A* 4hkn_A* 4hl5_A* ...

Probab=100.00  E-value=1.2e-35  Score=274.98  Aligned_cols=151  Identities=20%  Similarity=0.351  Sum_probs=125.5

Q ss_pred             CccEEEEEEecCHHHHHHHHHHHHHHHHHhccCCCCceEEeeecCChhhHHHHHhhcCCCCCCCCCCCcccceeEeCcCC
Q 020586           11 GVDILDVQRCSSASLLARFELFQKQLEITNKCRGDANVRYAWLATSKGALSTMIMYGLGHCGASTTKSTYGIGVHLAAAS   90 (324)
Q Consensus        11 ~~~I~~I~RV~n~~l~~ry~~fk~~~~~~~k~~g~~Ner~lfHGTs~~~i~~I~~~GF~~~~~~~~g~~yG~GIYFAp~~   90 (324)
                      +++|++|+||+|+.+|+||+.+|++|+.  ++.+..||++|||||+  .++.|+++||+++.+. ++++||+||||| ++
T Consensus        69 ~~~I~~I~rIqn~~l~~~y~~~k~~m~~--~~~~~~ne~~LfHGt~--~~~~I~~~Gf~~~~~~-~g~~~G~GiYfa-~~  142 (240)
T 3u9h_A           69 RYNILKIQKVCNKKLWERYTHRRKEVSE--ENHNHANERMLFHGSP--FVNAIIHKGFDERHAY-IGGMFGAGIYFA-EN  142 (240)
T ss_dssp             CEEEEEEEEEECHHHHHHHHHHHHHHHH--TTTTCCCEEEEEECCT--THHHHHHHCCCGGGCB-TTSTTCSBEEEE-SS
T ss_pred             CcEEEEEEEecCHhHHHHHHHHHHHHHH--hcCCCCceEEEEechH--hHHHHHHcCCCccccc-CCCcceeeEEec-CC
Confidence            5899999999999999999999999875  4567889999999998  5889999999988653 689999999999 46


Q ss_pred             CCcccCCccccC--------------CCCcEEEEEeeeccCCccccCCCCCCCCCCCCCCcccccCCCCC----cEEEEE
Q 020586           91 CPDTSASYTDVD--------------ENGVRHMVLCRVIMGNMEPLFPGTKQFHPSSEDFDSGVDDLQNP----RHYIVW  152 (324)
Q Consensus        91 ~s~~S~~Y~~~d--------------~~G~r~mlLcrVllG~~~~v~pgs~q~~ps~~~yDSvVd~~~np----~~yVV~  152 (324)
                      ++ +|++||...              .++.++||||||++|+++....+..... ++.+|||++|+..++    ++||||
T Consensus       143 ~s-~S~~y~~~~~~~~~~~~~~d~~~~~~~~~mlLc~V~lG~~~~~~~~~~~~~-pP~gyDSvvg~~~~~~l~~~E~VVy  220 (240)
T 3u9h_A          143 SS-KSNQYVYGIGGGTGCPVHKDRSCYICHRQLLFCRVTLGKSFLQFSAMKMAH-SPPGHHSVTGRPSVNGLALAEYVIY  220 (240)
T ss_dssp             HH-HHHTTTTSGGGTTCCTTTCCTTCSSSCEEEEEEEEECCSEEEEEECC--CC-CCTTCSEEEEEESSCTTCCCEEEES
T ss_pred             hh-hhhhhhhccccccccccccccccccCceEEEEEEEecCceEeecCcccccC-CCCCCCceecCCCCCCCCCCEEEEE
Confidence            55 588998531              1368999999999999987765433222 346999999987665    599999


Q ss_pred             eCCCCccccceeEEEEEecC
Q 020586          153 NMNMNTHIFPEFVVSFKFSS  172 (324)
Q Consensus       153 ~~~mNtqiyPeYvItyk~~~  172 (324)
                      +++   ||||+|||+|+.++
T Consensus       221 ~~~---qi~P~YlI~y~~~~  237 (240)
T 3u9h_A          221 RGE---QAYPEYLITYQIMR  237 (240)
T ss_dssp             CGG---GEEEEEEEEEEECC
T ss_pred             ccc---ceeEEEEEEEEccC
Confidence            984   99999999999864

>1efy_A Poly (ADP-ribose) polymerase; benzimidazole, inhibitor, catalytic fragment, transferase; HET: BZC; 2.20A {Gallus gallus} SCOP: a.41.1.1 d.166.1.2 PDB: 1a26_A* 1pax_A* 2paw_A 2pax_A* 3pax_A* 4pax_A* 2rcw_A* 1uk1_A* 1wok_A* 1uk0_A* 2rd6_A* 3gjw_A* 3gn7_A* 3l3l_A* 3l3m_A*

Probab=99.96  E-value=5.9e-30  Score=248.47  Aligned_cols=154  Identities=18%  Similarity=0.290  Sum_probs=122.6

Q ss_pred             cccCCCC-CC--CccEEEEEEecCHHHHHHHHHHHHHHHHHhccCCCCceEEeeecCChhhHHHHHhhcCCCC--CCCCC
Q 020586            2 FLMGMSP-SS--GVDILDVQRCSSASLLARFELFQKQLEITNKCRGDANVRYAWLATSKGALSTMIMYGLGHC--GASTT   76 (324)
Q Consensus         2 F~~gm~~-~~--~~~I~~I~RV~n~~l~~ry~~fk~~~~~~~k~~g~~Ner~lfHGTs~~~i~~I~~~GF~~~--~~~~~   76 (324)
                      |..++++ ..  +.+|++|+||+|+.+|+||+.++          +.+|+++|||||+.+++..|+++||++.  .++.+
T Consensus       157 ~~~t~~~~h~~~~~~I~~I~rV~~~~~~~~f~~~k----------~~~n~~~L~HGt~~~n~~~Il~~Gf~~~~~~~~~~  226 (350)
T 1efy_A          157 VKNTHAATHNAYDLKVVEIFRIEREGESQRYKPFK----------QLHNRQLLWHGSRTTNFAGILSQGLRIAPPEAPVT  226 (350)
T ss_dssp             HHHTCCGGGCSEEEEEEEEEEEEETTHHHHHGGGG----------GSSCEEEEEEEECGGGHHHHHHHCSCCCCTTSCGG
T ss_pred             HhcccCCCCCCCcccccceEEecCHHHHHHHHHhh----------ccCCeeEEEeCCchHHHHHHHHcCCCcccccCCCc
Confidence            3345543 22  38999999999999999998764          2369999999999999999999999874  34557


Q ss_pred             CCcccceeEeCcCCCCcccCCccccCC-CCcEEEEEeeeccCCccccCCCCCCCCCCCCCCcccccC-------------
Q 020586           77 KSTYGIGVHLAAASCPDTSASYTDVDE-NGVRHMVLCRVIMGNMEPLFPGTKQFHPSSEDFDSGVDD-------------  142 (324)
Q Consensus        77 g~~yG~GIYFAp~~~s~~S~~Y~~~d~-~G~r~mlLcrVllG~~~~v~pgs~q~~ps~~~yDSvVd~-------------  142 (324)
                      |++||+||||| ++++ +|++||..+. +|.++||||||++|++..+..... ...++.+|||+++-             
T Consensus       227 g~~fG~GiYfa-~~~s-kS~~Y~~~~~~~~~~~m~Lc~V~lG~~~~~~~~~~-~~~~p~g~~Sv~g~g~~~Pd~~~~~~~  303 (350)
T 1efy_A          227 GYMFGKGIYFA-DMVS-KSANYCHTSQADPIGLILLGEVALGNMYELKNASH-ITKLPKGKHSVKGLGKTAPDPTATTTL  303 (350)
T ss_dssp             GSTTSSSEEEB-SSHH-HHHGGGCCCSSSCEEEEEEEEEECCSEEEESSCCC-CCSCCTTCCEEEECCSEEECGGGCEEE
T ss_pred             cCceecccccc-cchh-hhhccccCCCCCCeEEEEEEEEecCCceeccCcch-hhhcCCCCcceeeccccCCCccccccC
Confidence            89999999999 4554 6999998774 789999999999999987654332 33445688887642             


Q ss_pred             ------------------CCCCcEEEEEeCCCCccccceeEEEEEec
Q 020586          143 ------------------LQNPRHYIVWNMNMNTHIFPEFVVSFKFS  171 (324)
Q Consensus       143 ------------------~~np~~yVV~~~~mNtqiyPeYvItyk~~  171 (324)
                                        ..++++||||+.+   |+||+|||+|+..
T Consensus       304 dgv~vP~G~~~~~~~~~~~l~~~EyVVYd~~---Qi~p~YLI~~~~~  347 (350)
T 1efy_A          304 DGVEVPLGNGISTGINDTCLLYNEYIVYDVA---QVNLKYLLKLKFN  347 (350)
T ss_dssp             TTEEECCSCEEECSCCSSSCSBCEEEESCGG---GEEEEEEEEEEEE
T ss_pred             CCeeeecCcccCCCCCCCCCCCCEEEEEchh---heeEEEEEEEEEE
Confidence                              1235899999985   9999999999874

>3c4h_A Poly(ADP-ribose) polymerase 3; enzyme-inhibitor complex, catalytic fragment, structural GEN structural genomics consortium, SGC; HET: DRL; 2.10A {Homo sapiens} PDB: 3c49_A* 2pa9_A* 3ce0_A* 3fhb_A*

Probab=99.95  E-value=2e-29  Score=245.37  Aligned_cols=142  Identities=16%  Similarity=0.271  Sum_probs=112.9

Q ss_pred             CccEEEEEEecCHHHHHHHHHHHHHHHHHhccCCCCceEEeeecCChhhHHHHHhhcCCCCCCCCCCCcccceeEeCcCC
Q 020586           11 GVDILDVQRCSSASLLARFELFQKQLEITNKCRGDANVRYAWLATSKGALSTMIMYGLGHCGASTTKSTYGIGVHLAAAS   90 (324)
Q Consensus        11 ~~~I~~I~RV~n~~l~~ry~~fk~~~~~~~k~~g~~Ner~lfHGTs~~~i~~I~~~GF~~~~~~~~g~~yG~GIYFAp~~   90 (324)
                      ..+|++|+||+|+.+|+||+.+++          ..|+++|||||+.+++..|+++||+..  +.+|++||+||||| .+
T Consensus       177 ~~~I~~I~rV~n~~~~~rF~~~k~----------~~n~~~LfHGt~~~~~~~I~~~Gf~~~--~~~g~~fG~GiYfa-~~  243 (357)
T 3c4h_A          177 CPTLQHIWKVNQEGEEDRFQAHSK----------LGNRKLLWHGTNMAVVAAILTSGLRIM--PHSGGRVGKGIYFA-SE  243 (357)
T ss_dssp             CCCEEEEEEEECTTSHHHHHTTTT----------CCCEEEEEEEECHHHHHHHHHHCSCCC--TTCCCTTCSSEEEB-SS
T ss_pred             CccEEEEEEecCHHHHHHHHHHhc----------cCCeEEEEeCCChhhHHHHHHcCCccc--CCCCCceECCEecC-Cc
Confidence            389999999999999999987742          469999999999999999999999973  34799999999999 45


Q ss_pred             CCcccCCccc--c-CCCCcEEEEEeeeccCCccccCCCCCCCCCCCCCCccccc-----------------------C--
Q 020586           91 CPDTSASYTD--V-DENGVRHMVLCRVIMGNMEPLFPGTKQFHPSSEDFDSGVD-----------------------D--  142 (324)
Q Consensus        91 ~s~~S~~Y~~--~-d~~G~r~mlLcrVllG~~~~v~pgs~q~~ps~~~yDSvVd-----------------------~--  142 (324)
                      ++ +|++||.  + +.+|.++||||||++|+++....+......++.+|||+++                       .  
T Consensus       244 ~s-kS~~Y~~~~~~~~~~~~~mllc~V~lG~~~~~~~~~~~~~~pP~g~dSv~g~g~~~P~~~~~~~~~~dg~~v~vp~G  322 (357)
T 3c4h_A          244 NS-KSAGYVIGMKCGAHHVGYMFLGEVALGREHHINTDNPSLKSPPPGFDSVIARGHTEPDPTQDTELELDGQQVVVPQG  322 (357)
T ss_dssp             HH-HHHTTCCCEEETTEEEEEEEEEEEECCSEEEESSCCTTCSSCCTTCSEEEECCSEEECGGGCEEEEETTEEEEECCS
T ss_pred             ch-hhhhhcccCCCCCCCeEEEEEEEEecCCceeccCCchhccCCCCCCCccceecCCCCCcccceeeccCCCeEEecCC
Confidence            54 6999997  5 4678899999999999997655443222223346666321                       1  


Q ss_pred             -----------CCCCcEEEEEeCCCCccccceeEEEEE
Q 020586          143 -----------LQNPRHYIVWNMNMNTHIFPEFVVSFK  169 (324)
Q Consensus       143 -----------~~np~~yVV~~~~mNtqiyPeYvItyk  169 (324)
                                 .-++++||||+.+   |+||+|||+||
T Consensus       323 ~~v~~~~~~~~~l~~nEyVVYd~~---Qv~p~YLi~~k  357 (357)
T 3c4h_A          323 QPVPCPEFSSSTFSQSEYLIYQES---QCRLRYLLEVH  357 (357)
T ss_dssp             CEEECGGGTTCSCSBCEEEESSGG---GEEEEEEEEEC
T ss_pred             CcccCCCCCCCccCCCEEEEEchh---heeEEEEEEEC
Confidence                       1135799999985   99999999996

>3kjd_A Poly [ADP-ribose] polymerase 2; transferase, enzyme-inhibitor complex, catalytic fragment, S genomics, structural genomics consortium, SGC; HET: 78P; 1.95A {Homo sapiens} PDB: 3kcz_A* 1gs0_A

Probab=99.94  E-value=7.5e-28  Score=234.83  Aligned_cols=143  Identities=19%  Similarity=0.253  Sum_probs=117.3

Q ss_pred             CccEEEEEEecCHHHHHHHHHHHHHHHHHhccCCCCceEEeeecCChhhHHHHHhhcCCCCC--CCCCCCcccceeEeCc
Q 020586           11 GVDILDVQRCSSASLLARFELFQKQLEITNKCRGDANVRYAWLATSKGALSTMIMYGLGHCG--ASTTKSTYGIGVHLAA   88 (324)
Q Consensus        11 ~~~I~~I~RV~n~~l~~ry~~fk~~~~~~~k~~g~~Ner~lfHGTs~~~i~~I~~~GF~~~~--~~~~g~~yG~GIYFAp   88 (324)
                      +.+|++|+||+|+.+|+||+  +          ...|+++|||||+.+++++|+++||++..  ++.+|++||+||||| 
T Consensus       187 ~~~I~~IfrI~r~~e~~~F~--k----------~~~N~~lLwHGT~~~n~~~Il~~Gf~~~~~~~~~~g~~fGkGIYFA-  253 (368)
T 3kjd_A          187 TMTLLDLFEVEKDGEKEAFR--E----------DLHNRMLLWHGSRMSNWVGILSHGLRIAHPEAPITGYMFGKGIYFA-  253 (368)
T ss_dssp             EEEEEEEEEEEETTHHHHSC--T----------TCSCEEEEEEECCGGGHHHHHHHCSCCCCTTSCGGGSTTCSSEEEB-
T ss_pred             ceeEEEEEEecchHHHHHHh--h----------cCCCceEEEeCCCHHHHHHHHHcCCCcccccccccCceeeeEEEcc-
Confidence            48999999999999999987  1          23599999999999999999999999854  456799999999999 


Q ss_pred             CCCCcccCCccccC-CCCcEEEEEeeeccCCccccCCCCCCCCCCCCCCcccccC----C--------------------
Q 020586           89 ASCPDTSASYTDVD-ENGVRHMVLCRVIMGNMEPLFPGTKQFHPSSEDFDSGVDD----L--------------------  143 (324)
Q Consensus        89 ~~~s~~S~~Y~~~d-~~G~r~mlLcrVllG~~~~v~pgs~q~~ps~~~yDSvVd~----~--------------------  143 (324)
                      ++++ +|++||.++ .+|.++||||||++|++..+.........++.+|||+++-    +                    
T Consensus       254 ~~~s-kS~~Y~~~~~~~~~~~mlLc~V~lG~~~~~~~~~~~~~~pP~G~dSv~g~G~~~P~~~~~~~~dgv~vP~G~~~~  332 (368)
T 3kjd_A          254 DMSS-KSANYCFASRLKNTGLLLLSEVALGQCNELLEANPKAEGLLQGKHSTKGLGKMAPSSAHFVTLNGSTVPLGPASD  332 (368)
T ss_dssp             SSHH-HHHHTTCCCSSSCEEEEEEEEEECCSEEEESSCCTTGGGGCTTCCEEEECEEEEECGGGCEEETTEEECCSCEEE
T ss_pred             cccc-ccccccCCCCCCCeEEEEEEEEecCCceeccccCcccccCCCCCceEEeeCCCcCCcccccccCCEEeeCCCccc
Confidence            4554 699999877 6789999999999999987754332222345699999854    0                    


Q ss_pred             ----------CCCcEEEEEeCCCCccccceeEEEEEe
Q 020586          144 ----------QNPRHYIVWNMNMNTHIFPEFVVSFKF  170 (324)
Q Consensus       144 ----------~np~~yVV~~~~mNtqiyPeYvItyk~  170 (324)
                                -+.+|||||+.+   |+.|.|||.++.
T Consensus       333 ~~~~~~~~~~L~ynEyIVYd~~---Qir~rYLv~v~~  366 (368)
T 3kjd_A          333 TGILNPDGYTLNYNEYIVYNPN---QVRMRYLLKVQF  366 (368)
T ss_dssp             CCCCCSSSCCEEECEEEESSGG---GEEEEEEEEEEE
T ss_pred             CCCCCCcCccccCCceEEechh---HeeEEEEEEEEe
Confidence                      123599999985   999999999986

>4dqy_C Poly [ADP-ribose] polymerase 1; PARP, poly(ADP-ribose) polymerase, DNA binding protein, ADP- transferase, PARP-like zinc finger, poly(ADP-ribosyl)ation; HET: DNA; 3.25A {Homo sapiens} PDB: 2cr9_A

Probab=99.94  E-value=5.1e-27  Score=237.24  Aligned_cols=147  Identities=19%  Similarity=0.326  Sum_probs=121.7

Q ss_pred             CccEEEEEEecCHHHHHHHHHHHHHHHHHhccCCCCceEEeeecCChhhHHHHHhhcCCCC--CCCCCCCcccceeEeCc
Q 020586           11 GVDILDVQRCSSASLLARFELFQKQLEITNKCRGDANVRYAWLATSKGALSTMIMYGLGHC--GASTTKSTYGIGVHLAA   88 (324)
Q Consensus        11 ~~~I~~I~RV~n~~l~~ry~~fk~~~~~~~k~~g~~Ner~lfHGTs~~~i~~I~~~GF~~~--~~~~~g~~yG~GIYFAp   88 (324)
                      +.+|++|+||+|+.+|.||+.+++          ..|+++|||||+.+++++||++||+++  .++.+|.+||+||||| 
T Consensus       314 ~~~I~~I~rI~~~~e~~~f~~~k~----------~~N~~lL~HGT~~~n~~~Il~~Gf~~~~~~a~~~G~~fGkGiYFA-  382 (506)
T 4dqy_C          314 DLEVIDIFKIEREGECQRYKPFKQ----------LHNRRLLWHGSRTTNFAGILSQGLRIAPPEAPVTGYMFGKGIYFA-  382 (506)
T ss_dssp             CCCEEEEEEEEETTTTTTTHHHHS----------SSCEEEEEEECCTTTHHHHHHHCSCCCCSSSCCTTCSSCSSEEEB-
T ss_pred             CceeEeEEEEccHHHHhhHHHhhc----------CCCceEEecCCChHhHHHHHhcCCCcCCccCCcCCceeeeeEEec-
Confidence            589999999999999999998751          259999999999999999999999975  4566788999999999 


Q ss_pred             CCCCcccCCccccCC-CCcEEEEEeeeccCCccccCCCCCCCCCCCCCCcccccCC------------------------
Q 020586           89 ASCPDTSASYTDVDE-NGVRHMVLCRVIMGNMEPLFPGTKQFHPSSEDFDSGVDDL------------------------  143 (324)
Q Consensus        89 ~~~s~~S~~Y~~~d~-~G~r~mlLcrVllG~~~~v~pgs~q~~ps~~~yDSvVd~~------------------------  143 (324)
                      ++++ +|++||.++. +|.++||||+|++|++........ ...++.+|||+++--                        
T Consensus       383 ~~as-kS~~Y~~~~~~~~~~~mll~~V~lG~~~~~~~~~~-~~~~p~G~dSv~g~g~~~P~p~~~~~~dGv~vP~G~~~~  460 (506)
T 4dqy_C          383 DMVS-KSANYCHTSQGDPIGLILLGEVALGNMYELKHASH-ISKLPKGKHSVKGLGKTTPDPSANISLDGVDVPLGTGIS  460 (506)
T ss_dssp             SSHH-HHHTTSCCCSSSCEEEEEEEEEECCSEEEESSCCC-CSSCCTTCCEEEECCSEEECGGGCEESSSCEECCCCEEE
T ss_pred             chhh-ccccccCCCCCCCeEEEEEEEEecCCceecccchh-hhccCCCCceEEeCCcCcCCcccccccCCeEEECCCccc
Confidence            4655 5999998875 689999999999999887754332 233457999997641                        


Q ss_pred             -------CCCcEEEEEeCCCCccccceeEEEEEecCC
Q 020586          144 -------QNPRHYIVWNMNMNTHIFPEFVVSFKFSSN  173 (324)
Q Consensus       144 -------~np~~yVV~~~~mNtqiyPeYvItyk~~~~  173 (324)
                             -+.+|||||+.+   |+.|.|||.++...+
T Consensus       461 ~~~~~~~l~ynEyiVYd~~---Qir~rYLv~v~~~~~  494 (506)
T 4dqy_C          461 SGVNDTSLLYNEYIVYDIA---QVNLKYLLKLKFNFK  494 (506)
T ss_dssp             CSCCCCSCSBCEEEESSGG---GEEEEEEEEEECCCC
T ss_pred             CCCCCCcccccceEEEchH---HeeEEEEEEEEEEcc
Confidence                   124699999985   999999999998653

>4f0d_A PARP-16, poly [ADP-ribose] polymerase 16; transferase, ARTD15, structural genomics structural genomics consortium, SGC; HET: 3AB; 2.70A {Homo sapiens}

Probab=99.27  E-value=8.3e-12  Score=117.45  Aligned_cols=142  Identities=16%  Similarity=0.179  Sum_probs=84.0

Q ss_pred             ccEEEEEEec-CHHHHHHHHHHHHHHHHHhccCCCCceEEeeecCChhhHHHHHhhcCCCCCCCCCCCcccceeEeCcCC
Q 020586           12 VDILDVQRCS-SASLLARFELFQKQLEITNKCRGDANVRYAWLATSKGALSTMIMYGLGHCGASTTKSTYGIGVHLAAAS   90 (324)
Q Consensus        12 ~~I~~I~RV~-n~~l~~ry~~fk~~~~~~~k~~g~~Ner~lfHGTs~~~i~~I~~~GF~~~~~~~~g~~yG~GIYFAp~~   90 (324)
                      .....|.+|. .....++|+..++          ..+..++|||++.+++.+|+++||+...  .+|.+||.|||||. +
T Consensus       118 ~~P~~If~V~~~~~~~~~f~~~~~----------~~~~~~~~HGS~l~n~~sIL~~GL~~~~--~~g~~fG~GiY~a~-~  184 (277)
T 4f0d_A          118 PAPDFLFEIEYFDPANAKFYETKG----------ERDLIYAFHGSRLENFHSIIHNGLHCHL--NKTSLFGEGTYLTS-D  184 (277)
T ss_dssp             CCCSEEEEEEECTTHHHHHHHHHT----------TSCEEEEEEECCGGGHHHHHHHCSCCC----CCCSSSCCEEEBS-C
T ss_pred             CCCceeEEEecCcchhhHHHHhhc----------cCCcEEEEcCCcHHHHHHHHhcccccCc--ccccccCCceEeec-c
Confidence            4445666665 3445567766542          2379999999999999999999998754  36899999999994 5


Q ss_pred             CCcccCCccccCC------CC--cEEEEEeeeccCCcccc---CCCCCCC-CCCCCCCcccccCCCCCcEEEEEeCCCCc
Q 020586           91 CPDTSASYTDVDE------NG--VRHMVLCRVIMGNMEPL---FPGTKQF-HPSSEDFDSGVDDLQNPRHYIVWNMNMNT  158 (324)
Q Consensus        91 ~s~~S~~Y~~~d~------~G--~r~mlLcrVllG~~~~v---~pgs~q~-~ps~~~yDSvVd~~~np~~yVV~~~~mNt  158 (324)
                      .+ +|..||....      -|  .++|.||+|+..--.+.   ...+... ......+||.-+++  |..|+|-++  |.
T Consensus       185 ~~-~S~~ys~~~~~W~~S~~g~~~~~valcEvv~~p~~k~q~~~~~~~~~~~~~~~~~~s~~~~~--p~~y~vV~n--~~  259 (277)
T 4f0d_A          185 LS-LALIYSPHGHGWQHSLLGPILSCVAVCEVIDHPDVKCQTKKKDSKEIDRRRARIKHSEGGDI--PPKYFVVTN--NQ  259 (277)
T ss_dssp             HH-HHHTTCCCEECCTTCTTCSEEEEEEEEEEECCCC--------------------------------CCEEECC--GG
T ss_pred             hH-HHhhhccCCCCcCcccccccceEEEEEEEecCCcceeeeeccccccccccccccccccCCCC--CCCEEEEEc--cc
Confidence            44 6888985321      23  58999999988433211   1111111 11223466655554  455555554  37


Q ss_pred             cccceeEEEEEec
Q 020586          159 HIFPEFVVSFKFS  171 (324)
Q Consensus       159 qiyPeYvItyk~~  171 (324)
                      .+...||+.|...
T Consensus       260 ~v~~rYllvy~~~  272 (277)
T 4f0d_A          260 LLRVKYLLVYSQK  272 (277)
T ss_dssp             GEEEEEEEEEEC-
T ss_pred             eEEEEEEEEEccC
Confidence            9999999999653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	324
d1efya2	215	d.166.1.2 (A:797-1011) Poly(ADP-ribose) polymerase	3e-13
d1gs0a2	217	d.166.1.2 (A:341-557) Poly(ADP-ribose) polymerase,	3e-08

>d1efya2 d.166.1.2 (A:797-1011) Poly(ADP-ribose) polymerase, C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} Length = 215

class: Alpha and beta proteins (a+b)
fold: ADP-ribosylation
superfamily: ADP-ribosylation
family: Poly(ADP-ribose) polymerase, C-terminal domain
domain: Poly(ADP-ribose) polymerase, C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 65.9 bits (160), Expect = 3e-13
 Identities = 24/171 (14%), Positives = 58/171 (33%), Gaps = 26/171 (15%)

Query: 12  VDILDVQRCSSASLLARFELFQKQLEITNKCRGDANVRYAWLATSKGALSTMIMYGLGHC 71
           + ++++ R        R++ F++            N +  W  +     + ++  GL   
Sbjct: 35  LKVVEIFRIEREGESQRYKPFKQL----------HNRQLLWHGSRTTNFAGILSQGLRIA 84

Query: 72  GASTTKSTYGIGVHLAAASCPDTSASYTDVDE-NGVRHMVLCRVIMGNMEPLFPGTKQFH 130
                 + Y  G  +  A     SA+Y    + + +  ++L  V +GNM  L   +    
Sbjct: 85  PPEAPVTGYMFGKGIYFADMVSKSANYCHTSQADPIGLILLGEVALGNMYELKNASHITK 144

Query: 131 PS--------------SEDFDSGVDDLQNPRHYIVWNMNMNTHI-FPEFVV 166
                                + +D ++ P    +     +T + + E++V
Sbjct: 145 LPKGKHSVKGLGKTAPDPTATTTLDGVEVPLGNGISTGINDTCLLYNEYIV 195

>d1gs0a2 d.166.1.2 (A:341-557) Poly(ADP-ribose) polymerase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 217

class: Alpha and beta proteins (a+b)
fold: ADP-ribosylation
superfamily: ADP-ribosylation
family: Poly(ADP-ribose) polymerase, C-terminal domain
domain: Poly(ADP-ribose) polymerase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.2 bits (122), Expect = 3e-08
 Identities = 23/205 (11%), Positives = 55/205 (26%), Gaps = 47/205 (22%)

Query: 1   MFLMGMSPSSGVDILDVQRCSSASLLARFELFQKQLEITNKCRGDANVRYAWLATSKGAL 60
                 +P+     + +           FE+ ++  +   +     N    W  +     
Sbjct: 21  YLQSTHAPTHKDYTMTLLDV--------FEVEKEGEKEAFREDL-PNRMLLWHGSRLSNW 71

Query: 61  STMIMYGLGHCGASTTKSTYGIGVHLAAASCPDTSASYTDVDE-NGVRHMVLCRVIMGNM 119
             ++ +GL         + Y  G  +  A     SA+Y           ++L  V +G  
Sbjct: 72  VGILSHGLRVAPPEAPITGYMFGKGIYFADMSSKSANYCFASRLKNTGLLLLSEVALGQC 131

Query: 120 EPLFPGTKQFH------------------------------PSSEDFDSGVDDLQNPRH- 148
             L     +                                P     D+G+ + +     
Sbjct: 132 NELLEANPKAQGLLRGKHSTKGMGKMAPSPAHFITLNGSTVPLGPASDTGILNPEGYTLN 191

Query: 149 ---YIVWNMNMNTHIFPEFVVSFKF 170
              +IV++      +   +++  +F
Sbjct: 192 YNEFIVYS---PNQVRMRYLLKIQF 213

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	324
d1efya2	215	Poly(ADP-ribose) polymerase, C-terminal domain {Ch	99.97
d1gs0a2	217	Poly(ADP-ribose) polymerase, C-terminal domain {Mo	99.95
d1qjta_	99	Eps15 {Mouse (Mus musculus) [TaxId: 10090]}	80.35

>d1efya2 d.166.1.2 (A:797-1011) Poly(ADP-ribose) polymerase, C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: ADP-ribosylation
superfamily: ADP-ribosylation
family: Poly(ADP-ribose) polymerase, C-terminal domain
domain: Poly(ADP-ribose) polymerase, C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.97  E-value=1.3e-31  Score=241.59  Aligned_cols=155  Identities=17%  Similarity=0.303  Sum_probs=122.3

Q ss_pred             cccCCCCCC---CccEEEEEEecCHHHHHHHHHHHHHHHHHhccCCCCceEEeeecCChhhHHHHHhhcCCCCCC--CCC
Q 020586            2 FLMGMSPSS---GVDILDVQRCSSASLLARFELFQKQLEITNKCRGDANVRYAWLATSKGALSTMIMYGLGHCGA--STT   76 (324)
Q Consensus         2 F~~gm~~~~---~~~I~~I~RV~n~~l~~ry~~fk~~~~~~~k~~g~~Ner~lfHGTs~~~i~~I~~~GF~~~~~--~~~   76 (324)
                      |..+|++..   +++|++|+||+|+.+|+||+.+++          ..|+++|||||+.+++..|+++||+++..  ..+
T Consensus        22 f~~t~~~~~~~~~~~I~~I~rI~~~~~~~~f~~~~~----------~~n~~~LfHGt~~~~~~~Il~~Gf~~~~~~~~~~   91 (215)
T d1efya2          22 VKNTHAATHNAYDLKVVEIFRIEREGESQRYKPFKQ----------LHNRQLLWHGSRTTNFAGILSQGLRIAPPEAPVT   91 (215)
T ss_dssp             HHHTCCGGGCSEEEEEEEEEEEEETTHHHHHGGGGG----------SSCEEEEEEEECGGGHHHHHHHCSCCCCTTSCGG
T ss_pred             HHhhCCCccCCCcceEEEEEEEcCcchHHHHHHhhc----------cCcEEEEEecCCHHHHHHHHHcCCCCCccccccc
Confidence            556676531   378999999999999999976542          35899999999999999999999987653  456


Q ss_pred             CCcccceeEeCcCCCCcccCCccccCC-CCcEEEEEeeeccCCccccCCCCCCCCCCCCCCccccc--------------
Q 020586           77 KSTYGIGVHLAAASCPDTSASYTDVDE-NGVRHMVLCRVIMGNMEPLFPGTKQFHPSSEDFDSGVD--------------  141 (324)
Q Consensus        77 g~~yG~GIYFAp~~~s~~S~~Y~~~d~-~G~r~mlLcrVllG~~~~v~pgs~q~~ps~~~yDSvVd--------------  141 (324)
                      +++||+||||| +++ .+|++||..+. +|.++||||||++|++.....+... .+++.+|||+.+              
T Consensus        92 g~~~G~GiYfa-~~~-s~S~~Y~~~~~~~~~~~mll~~V~lG~~~~~~~~~~~-~~~p~g~~s~~~~g~~~pd~~~~~~~  168 (215)
T d1efya2          92 GYMFGKGIYFA-DMV-SKSANYCHTSQADPIGLILLGEVALGNMYELKNASHI-TKLPKGKHSVKGLGKTAPDPTATTTL  168 (215)
T ss_dssp             GSTTSSSEEEB-SSH-HHHHGGGCCCSSSCEEEEEEEEEECCSEEEESSCCCC-CSCCTTCCEEEECCSEEECGGGCEEE
T ss_pred             CcceeeeEEec-Ccc-chhhccccCCccCCeeEEEEEEEEecceEEecCcccc-ccCCCCccccccccccCCChhhcccc
Confidence            89999999999 454 46999998774 7999999999999999876654332 334567777553              


Q ss_pred             -CCCC----------------CcEEEEEeCCCCccccceeEEEEEecC
Q 020586          142 -DLQN----------------PRHYIVWNMNMNTHIFPEFVVSFKFSS  172 (324)
Q Consensus       142 -~~~n----------------p~~yVV~~~~mNtqiyPeYvItyk~~~  172 (324)
                       ++..                .+|||||+++   |+||+|||+||...
T Consensus       169 d~v~vP~g~~~~~~~~~~~~~~~EyVVy~~~---Q~~p~YLI~~k~~~  213 (215)
T d1efya2         169 DGVEVPLGNGISTGINDTCLLYNEYIVYDVA---QVNLKYLLKLKFNY  213 (215)
T ss_dssp             TTEEECCSCEEECSCCSSSCSBCEEEESCGG---GEEEEEEEEEEEEE
T ss_pred             CCeeccCCCccccCCcCCccccCEEEEEech---hEeEEEEEEEEEEe
Confidence             2111                2689999995   99999999999764

>d1gs0a2 d.166.1.2 (A:341-557) Poly(ADP-ribose) polymerase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: ADP-ribosylation
superfamily: ADP-ribosylation
family: Poly(ADP-ribose) polymerase, C-terminal domain
domain: Poly(ADP-ribose) polymerase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=7.3e-29  Score=223.97  Aligned_cols=154  Identities=17%  Similarity=0.270  Sum_probs=114.0

Q ss_pred             cccCCCCCC---CccEEEEEEecCHHHHHHHHHHHHHHHHHhccCCCCceEEeeecCChhhHHHHHhhcCCCCCC--CCC
Q 020586            2 FLMGMSPSS---GVDILDVQRCSSASLLARFELFQKQLEITNKCRGDANVRYAWLATSKGALSTMIMYGLGHCGA--STT   76 (324)
Q Consensus         2 F~~gm~~~~---~~~I~~I~RV~n~~l~~ry~~fk~~~~~~~k~~g~~Ner~lfHGTs~~~i~~I~~~GF~~~~~--~~~   76 (324)
                      |.+++++..   ..+|.+|+||+++.+++||+            ....|+++|||||+.+++.+|+++||+++..  +.+
T Consensus        22 ~~~t~~~~~~~~~~~I~~I~~v~r~~e~~~~~------------~~~~n~~~LfHGT~~~n~~~Il~~Gf~~~~~~~~~~   89 (217)
T d1gs0a2          22 LQSTHAPTHKDYTMTLLDVFEVEKEGEKEAFR------------EDLPNRMLLWHGSRLSNWVGILSHGLRVAPPEAPIT   89 (217)
T ss_dssp             HHHTCCTTCCSEEEEEEEEEEEEETTHHHHSC------------TTCSCEEEEEEEECGGGHHHHHHHCSCCCCSSSCGG
T ss_pred             HHhhCCCccCCCcceEEEEEEEcchhHHHHhh------------hcCCceEEEEecccHHHHHHHHHcCCCCCCccCccc
Confidence            445555432   27899999999998888763            2346999999999999999999999998754  356


Q ss_pred             CCcccceeEeCcCCCCcccCCccccCC-CCcEEEEEeeeccCCccccCCCCCCCCCCCCCCcc-----------------
Q 020586           77 KSTYGIGVHLAAASCPDTSASYTDVDE-NGVRHMVLCRVIMGNMEPLFPGTKQFHPSSEDFDS-----------------  138 (324)
Q Consensus        77 g~~yG~GIYFAp~~~s~~S~~Y~~~d~-~G~r~mlLcrVllG~~~~v~pgs~q~~ps~~~yDS-----------------  138 (324)
                      +++||+||||| ++++ +|+.||..+. +|.++||||||++|++.....+......++.++||                 
T Consensus        90 g~~fG~GiYfa-~~~s-~s~~y~~~~~~~~~~~m~l~~V~lG~~~~~~~~~~~~~~~p~g~~sv~~~g~~~p~p~~~~~~  167 (217)
T d1gs0a2          90 GYMFGKGIYFA-DMSS-KSANYCFASRLKNTGLLLLSEVALGQCNELLEANPKAQGLLRGKHSTKGMGKMAPSPAHFITL  167 (217)
T ss_dssp             GSTTSSSEEEB-SCHH-HHHGGGCCCSSSCEEEEEEEEEECCSEEEESSCCTTGGGGCTTCSEEEECCSEECCGGGCEEE
T ss_pred             ceeeeccceec-cccc-cccccccCCcCCCeEEEEEEEEEecceeeeccCCcccccCCCCcceeeecccccCChhhcccc
Confidence            89999999999 4655 5999998774 78899999999999986443221111111223333                 


Q ss_pred             -------------cccCCCC----CcEEEEEeCCCCccccceeEEEEEecC
Q 020586          139 -------------GVDDLQN----PRHYIVWNMNMNTHIFPEFVVSFKFSS  172 (324)
Q Consensus       139 -------------vVd~~~n----p~~yVV~~~~mNtqiyPeYvItyk~~~  172 (324)
                                   .+++..+    .+|||||+.+   |+||+|||.||...
T Consensus       168 ~g~~vp~g~~~~s~~~~~~~~~l~~nEyVVy~~~---Qv~~~YLi~~k~~~  215 (217)
T d1gs0a2         168 NGSTVPLGPASDTGILNPEGYTLNYNEFIVYSPN---QVRMRYLLKIQFNF  215 (217)
T ss_dssp             TTEEECCSCCEECCCCCSSSCCCSBCEEEESCGG---GEEEEEEEEEEEEE
T ss_pred             CCeeccCCCccccCccCCCCCccccCeEEEEchh---heeEEEEEEEEEEe
Confidence                         3333322    2579999995   99999999998753

>d1qjta_ a.39.1.6 (A:) Eps15 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Eps15 homology domain (EH domain)
domain: Eps15
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=80.35  E-value=0.56  Score=34.69  Aligned_cols=47  Identities=13%  Similarity=0.130  Sum_probs=38.6

Q ss_pred             ccHHHHHHHHhc-cCChhHHHHHHHHHHHHHhCCCChHHHHHHHHHHh
Q 020586          242 MPFPMLFASISN-KVSPKVMEQISNQYELFRAKKVNRDDFVKKLRLIV  288 (324)
Q Consensus       242 ~~F~~L~~~l~~-~l~~~~~~~i~~~y~~~k~~kI~r~~~v~~~R~Iv  288 (324)
                      +++..+-..+++ .||.+.+..|-..++.=+.|+|+|+||+..||.|.
T Consensus        28 i~~~e~~~~l~~s~L~~~~L~~i~~~~D~d~dG~L~~~EF~~am~Li~   75 (99)
T d1qjta_          28 VLALDAAAFLKKSGLPDLILGKIWDLADTDGKGVLSKQEFFVALRLVA   75 (99)
T ss_dssp             CCSHHHHHHHHTSSSCHHHHHHHHHHHCCSSSSSCCSHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHcCCcHHHHHHHHHHHcCCCCCccCHHHHHHHHHHHH
Confidence            344455555554 79999999999999999999999999999998774