Citrus Sinensis ID: 020588

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320----
Protein Sequence
MYYCCYVSSSYFFHLEMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTVLSTIYIVIAIWLSVRDGLKNPARDYSIPGTTATKIFESIGACANLVFAFNTGMLPEIQATIRQPVVENMMKALYFQFSVGVLPMFAVTFVGYWAYGNSSSSYLLNNVSGPVWMKAAANISAFLQSVIALHVLFFIFHIPTSSLLSLYLFTE
Secondary Structure (PSIPRED)
cccEEEccccccEEEcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHEEEEEEEEEEcccccccccccccccccHHHHHHHHHHHHHHHHHccccHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cEEEEEEEcccEccccccccEHHHHHHHHHHHHHHHHHcHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHccccEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
myyccyvsssyFFHLEMLDSWFQVGFVLTTGinsayvlgypgtvmvpLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFwkddhtmklPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTVLSTIYIVIAIWLSVRdglknpardysipgttATKIFESIGACANLVFafntgmlpeiqaTIRQPVVENMMKALYFQFSVGVLPMFAVTFVGYWaygnssssyllnnvsGPVWMKAAANISAFLQSVIALHVLFFIFHiptssllslylfte
Flexible Loop (DISEMBL)
MYYCCYVSSSYFFHLEMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTVLSTIYIVIAIWLSVRDGLKNPARDYSIPGTTATKIFESIGACANLVFAFNTGMLPEIQATIRQPVVENMMKALYFQFSVGVLPMFAVTFVGYWAYGNSSSSYLLNNVSGPVWMKAAANISAFLQSVIALHVLFFIFHIPTSSLLSLYLFTE
Low Complexity Region (SEG)
MyyccyvsssyFFHLEMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTVLSTIYIVIAIWLSVRDGLKNPARDYSIPGTTATKIFESIGACANLVFAFNTGMLPEIQATIRQPVVENMMKALYFQFSVGVLPMFAVTFVGYWAygnssssyllnnvsgPVWMKAAANISAFLQSVIALHVLFFIFHIPTSSLLSLYLFTE
Disordered region (IsUnstruct)
*YYCCYVSSSYFFHLEMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTVLSTIYIVIAIWLSVRDGLKNPARDYSIPGTTATKIFESIGACANLVFAFNTGMLPEIQATIRQPVVENMMKALYFQFSVGVLPMFAVTFVGYWAY********LNNVSGPVWMKAAANISAFLQSVIALHVLFFIFHIPTSSLLSLYLF**
Disordered Region (DISOPRED)
***C****SSYFFHLEMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTVLSTIYIVIAIWLSVRDGLKNPARDYSIPGTTATKIFESIGACANLVFAFNTGMLPEIQATIRQPVVENMMKALYFQFSVGVLPMFAVTFVGYWAYGNSSSSYLLNNVSGPVWMKAAANISAFLQSVIALHVLFFIFHIPTSSLLSLYLFTE
Disordered Region (DISEMBL)
MYYCCYVSSSYFFHLEMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTVLSTIYIVIAIWLSVRDGLKNPARDYSIPGTTATKIFESIGACANLVFAFNTGMLPEIQATIRQPVVENMMKALYFQFSVGVLPMFAVTFVGYWAYGNSSSSYLLNNVSGPVWMKAAANISAFLQSVIALHVLFFIFHIPTSSLLSLYLFTE
Disordered Region (DISPRO)
MYYCCYVSSSYFFHLEMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTVLSTIYIVIAIWLSVRDGLKNPARDYSIPGTTATKIFESIGACANLVFAFNTGMLPEIQATIRQPVVENMMKALYFQFSVGVLPMFAVTFVGYWAYGNSSSSYLLNNVSGPVWMKAAANISAFLQSVIALHVLFFIFHIPTSSLLSLYLFTE
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHii
Transmembrane Helix (HMMTOP)
ooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MYYCCYVSSSYFFHLEMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTVLSTIYIVIAIWLSVRDGLKNPARDYSIPGTTATKIFESIGACANLVFAFNTGMLPEIQATIRQPVVENMMKALYFQFSVGVLPMFAVTFVGYWAYGNSSSSYLLNNVSGPVWMKAAANISAFLQSVIALHVLFFIFHIPTSSLLSLYLFTE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	324	2.2.26 [Sep-21-2011]
P92961	442	Proline transporter 1 OS=	yes	no	0.895	0.656	0.776	1e-131
P92962	439	Proline transporter 2 OS=	no	no	0.895	0.660	0.766	1e-129
Q9SJP9	436	Proline transporter 3 OS=	no	no	0.895	0.665	0.755	1e-127
Q69LA1	434	Probable proline transpor	yes	no	0.879	0.656	0.737	1e-123
Q60DN5	473	Proline transporter 1 OS=	no	no	0.895	0.613	0.707	1e-121
Q8L4X4	452	Probable GABA transporter	no	no	0.805	0.577	0.334	8e-24
F4HW02	451	GABA transporter 1 OS=Ara	no	no	0.814	0.585	0.308	2e-21
Q9LRB5	441	Lysine histidine transpor	no	no	0.910	0.668	0.275	2e-17
Q9FKS8	446	Lysine histidine transpor	no	no	0.895	0.650	0.280	7e-17
Q9SR44	441	Lysine histidine transpor	no	no	0.913	0.671	0.269	9e-17

>sp|P92961|PROT1_ARATH Proline transporter 1 OS=Arabidopsis thaliana GN=PROT1 PE=1 SV=1

 Score =  469 bits (1207), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 229/295 (77%), Positives = 262/295 (88%), Gaps = 5/295 (1%)

Query: 19  DSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFG 78
           DSWFQV FVLTTGINSAYVLGY GT+MVPLGWI GVVGL+IAT +SL AN LIAKLHEFG
Sbjct: 34  DSWFQVAFVLTTGINSAYVLGYSGTIMVPLGWIGGVVGLLIATAISLYANTLIAKLHEFG 93

Query: 79  GKRHIRYRDLAGHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTM 138
           G+RHIRYRDLAG IYGR+AY LTWGLQYVNLFMIN G+IILAG ALKA +VLF +DDHTM
Sbjct: 94  GRRHIRYRDLAGFIYGRKAYHLTWGLQYVNLFMINCGFIILAGSALKAVYVLF-RDDHTM 152

Query: 139 KLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTVLSTIYIVIAIWLSVRDGLKNPARDY 198
           KLP+FIAIAG +CA+FAIGIP+LSALGVWLGVST LS IYIV+AI LSVRDG+K P+RDY
Sbjct: 153 KLPHFIAIAGLICAIFAIGIPHLSALGVWLGVSTFLSLIYIVVAIVLSVRDGVKTPSRDY 212

Query: 199 SIPGTTATKIFESIGACANLVFAFNTGMLPEIQATIRQPVVENMMKALYFQFSVGVLPMF 258
            I G++ +K+F   GA ANLVFAFNTGMLPEIQAT+RQPVV+NMMKALYFQF+ GVLPM+
Sbjct: 213 EIQGSSLSKLFTITGAAANLVFAFNTGMLPEIQATVRQPVVKNMMKALYFQFTAGVLPMY 272

Query: 259 AVTFVGYWAYGNSSSSYLLNNVSGPVWMKAAANISAFLQSVIALHVLFFIFHIPT 313
           AVTF+GYWAYG+S+S+YLLN+V+GP+W+KA AN+SA LQSVI+LH    IF  PT
Sbjct: 273 AVTFIGYWAYGSSTSTYLLNSVNGPLWVKALANVSAILQSVISLH----IFASPT 323

Proline transporter that mediates proline and glycine betaine transport. May be involved in long-distance transport of proline and required for phloem loading, retrieval of proline leaking from the phloem, or in xylem-to-phloem transfer. When expressed in a heterologous system (yeast), imports D- and L-proline, glycine betaine and GABA across the plasma membrane. Has the same affinity for D- and L-proline.
Arabidopsis thaliana (taxid: 3702)

>sp|P92962|PROT2_ARATH Proline transporter 2 OS=Arabidopsis thaliana GN=PROT2 PE=1 SV=1

 Score =  462 bits (1190), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 226/295 (76%), Positives = 259/295 (87%), Gaps = 5/295 (1%)

Query: 19  DSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFG 78
           DSWFQV FVLTTGINSAYVLGY GTVMVPLGWI GVVGLI+AT +SL AN LIAKLHEFG
Sbjct: 31  DSWFQVAFVLTTGINSAYVLGYSGTVMVPLGWIGGVVGLILATAISLYANTLIAKLHEFG 90

Query: 79  GKRHIRYRDLAGHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTM 138
           GKRHIRYRDLAG IYG++ Y +TWGLQYVNLFMIN G+IILAG ALKA +VLF +DD  M
Sbjct: 91  GKRHIRYRDLAGFIYGKKMYRVTWGLQYVNLFMINCGFIILAGSALKAVYVLF-RDDSLM 149

Query: 139 KLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTVLSTIYIVIAIWLSVRDGLKNPARDY 198
           KLP+FIAIAG VCA+FAIGIP+LSALG+WLGVST+LS IYI++AI LS +DG+  P RDY
Sbjct: 150 KLPHFIAIAGVVCAIFAIGIPHLSALGIWLGVSTILSIIYIIVAIVLSAKDGVNKPERDY 209

Query: 199 SIPGTTATKIFESIGACANLVFAFNTGMLPEIQATIRQPVVENMMKALYFQFSVGVLPMF 258
           +I G++  K+F   GA ANLVFAFNTGMLPEIQAT++QPVV+NMMKALYFQF+VGVLPM+
Sbjct: 210 NIQGSSINKLFTITGAAANLVFAFNTGMLPEIQATVKQPVVKNMMKALYFQFTVGVLPMY 269

Query: 259 AVTFVGYWAYGNSSSSYLLNNVSGPVWMKAAANISAFLQSVIALHVLFFIFHIPT 313
           AVTF+GYWAYG+S+S+YLLN+VSGPVW+KA ANISAFLQSVI+LH    IF  PT
Sbjct: 270 AVTFIGYWAYGSSTSTYLLNSVSGPVWVKALANISAFLQSVISLH----IFASPT 320

Proline transporter that mediates proline and glycine betaine transport. May be involved in the uptake of compatible solutes from the soil into the roots, or in retrieval of apoplastic amino acids delivered to the roots via the phloem. May be involved in delivery of proline to wounding sites. When expressed in a heterologous system (yeast), imports D- and L-proline, glycine betaine and GABA across the plasma membrane. Has the same affinity for D- and L-proline.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SJP9|PROT3_ARATH Proline transporter 3 OS=Arabidopsis thaliana GN=PROT3 PE=1 SV=1

 Score =  453 bits (1166), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 223/295 (75%), Positives = 254/295 (86%), Gaps = 5/295 (1%)

Query: 19  DSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFG 78
           DSWFQ  FVLTT INSAYVLGY GTVMVPLGWI GVVGLI+AT +SL AN L+AKLHEFG
Sbjct: 28  DSWFQAAFVLTTSINSAYVLGYSGTVMVPLGWIGGVVGLILATAISLYANTLVAKLHEFG 87

Query: 79  GKRHIRYRDLAGHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTM 138
           GKRHIRYRDLAG IYGR+AY LTW LQYVNLFMIN G+IILAG ALKA +VLF +DDH M
Sbjct: 88  GKRHIRYRDLAGFIYGRKAYCLTWVLQYVNLFMINCGFIILAGSALKAVYVLF-RDDHAM 146

Query: 139 KLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTVLSTIYIVIAIWLSVRDGLKNPARDY 198
           KLP+FIAIAG +CA+FAIGIP+LSALG+WL VST+LS IYIV+AI LSV+DG+K P+RDY
Sbjct: 147 KLPHFIAIAGLICAVFAIGIPHLSALGIWLAVSTILSLIYIVVAIVLSVKDGVKAPSRDY 206

Query: 199 SIPGTTATKIFESIGACANLVFAFNTGMLPEIQATIRQPVVENMMKALYFQFSVGVLPMF 258
            I G+  +K+F   GA A LVF FNTGMLPEIQAT++QPVV+NMMKALYFQF+VGVLPMF
Sbjct: 207 EIQGSPLSKLFTITGAAATLVFVFNTGMLPEIQATVKQPVVKNMMKALYFQFTVGVLPMF 266

Query: 259 AVTFVGYWAYGNSSSSYLLNNVSGPVWMKAAANISAFLQSVIALHVLFFIFHIPT 313
           AV F+GYWAYG+S+S YLLNNV+GP+W+KA ANISA LQSVI+LH    IF  PT
Sbjct: 267 AVVFIGYWAYGSSTSPYLLNNVNGPLWVKALANISAILQSVISLH----IFASPT 317

Proline transporter that mediates proline and glycine betaine transport. When expressed in a heterologous system (yeast), imports L-proline, glycine betaine and GABA across the plasma membrane.

Arabidopsis thaliana (taxid: 3702)

>sp|Q69LA1|PROT2_ORYSJ Probable proline transporter 2 OS=Oryza sativa subsp. japonica GN=LOC_Os07g01090 PE=2 SV=1

 Score =  440 bits (1132), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 211/286 (73%), Positives = 249/286 (87%), Gaps = 1/286 (0%)

Query: 19  DSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFG 78
           D W+QVGFVLTTG+NSAYVLGY G+VMVPLGWI G  GLI+A  +SL ANAL+A+LHE G
Sbjct: 25  DPWYQVGFVLTTGVNSAYVLGYSGSVMVPLGWIGGTCGLILAAAISLYANALLARLHEIG 84

Query: 79  GKRHIRYRDLAGHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTM 138
           GKRHIRYRDLAGHIYGR+ Y+LTW LQYVNLFMINTG+IILAGQALKA +VLF +DD  +
Sbjct: 85  GKRHIRYRDLAGHIYGRKMYSLTWALQYVNLFMINTGFIILAGQALKATYVLF-RDDGVL 143

Query: 139 KLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTVLSTIYIVIAIWLSVRDGLKNPARDY 198
           KLPY IA++GFVCALFA GIP LSAL +WLG ST  S IYI IA  LS+RDG+  PA+DY
Sbjct: 144 KLPYCIALSGFVCALFAFGIPYLSALRIWLGFSTFFSLIYITIAFVLSLRDGITTPAKDY 203

Query: 199 SIPGTTATKIFESIGACANLVFAFNTGMLPEIQATIRQPVVENMMKALYFQFSVGVLPMF 258
           +IPG+ + +IF +IGA ANLVFA+NTGMLPEIQATIR PVV+NM KAL+FQF+VG LP++
Sbjct: 204 TIPGSHSARIFTTIGAVANLVFAYNTGMLPEIQATIRPPVVKNMEKALWFQFTVGSLPLY 263

Query: 259 AVTFVGYWAYGNSSSSYLLNNVSGPVWMKAAANISAFLQSVIALHV 304
           AVTF+GYWAYG+S+SSYLLN+V GPVW+KA AN+SAFLQ+VIALH+
Sbjct: 264 AVTFMGYWAYGSSTSSYLLNSVKGPVWVKAMANLSAFLQTVIALHI 309

Proline transporter that mediates proline transport across the plasma membrane.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q60DN5|PROT1_ORYSJ Proline transporter 1 OS=Oryza sativa subsp. japonica GN=PROT1 PE=2 SV=1

 Score =  433 bits (1114), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 206/291 (70%), Positives = 250/291 (85%), Gaps = 1/291 (0%)

Query: 14  HLEMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAK 73
           H   +D W+QVGF+LTTG+NSAYVLGY  ++MVPLGWI G  GLI+A  +S+ ANAL+A 
Sbjct: 59  HQISIDPWYQVGFILTTGVNSAYVLGYSASIMVPLGWIGGTCGLILAAAISMYANALLAH 118

Query: 74  LHEFGGKRHIRYRDLAGHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWK 133
           LHE GGKRHIRYRDLAGHIYGR+ Y+LTW LQYVNLFMINTG IILAGQALKA +VLF +
Sbjct: 119 LHEVGGKRHIRYRDLAGHIYGRKMYSLTWALQYVNLFMINTGLIILAGQALKAIYVLF-R 177

Query: 134 DDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTVLSTIYIVIAIWLSVRDGLKN 193
           DD  +KLPY IA++GFVCALFA GIP LSAL +WLG+STV S IYI+IA  +S+RDG+  
Sbjct: 178 DDGVLKLPYCIALSGFVCALFAFGIPYLSALRIWLGLSTVFSLIYIMIAFVMSLRDGITT 237

Query: 194 PARDYSIPGTTATKIFESIGACANLVFAFNTGMLPEIQATIRQPVVENMMKALYFQFSVG 253
           PA+DY+IPG+ + +IF +IGA ANLVFA+NTGMLPEIQATIR PVV+NM KAL+FQF+VG
Sbjct: 238 PAKDYTIPGSHSDRIFTTIGAVANLVFAYNTGMLPEIQATIRPPVVKNMEKALWFQFTVG 297

Query: 254 VLPMFAVTFVGYWAYGNSSSSYLLNNVSGPVWMKAAANISAFLQSVIALHV 304
            LP++AVTF+GYWAYG+S+SSYLLN+V GP+W+K  AN+SAFLQ+VIALH+
Sbjct: 298 SLPLYAVTFMGYWAYGSSTSSYLLNSVKGPIWIKTVANLSAFLQTVIALHI 348

Proline transporter that mediates proline transport across the plasma membrane when expressed in a heterologous system (Xenopus oocytes).

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8L4X4|GAT2_ARATH Probable GABA transporter 2 OS=Arabidopsis thaliana GN=At5g41800 PE=2 SV=1

 Score =  111 bits (277), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 96/287 (33%), Positives = 143/287 (49%), Gaps = 26/287 (9%)

Query: 13  FHLEMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIA 72
           F L+    W+  GF LTT I    +L  P      LGW  G V L    +V+  A  L++
Sbjct: 23  FVLQSKGEWWHAGFHLTTAIVGPTILTLP-YAFRGLGWWLGFVCLTTMGLVTFYAYYLMS 81

Query: 73  KL---HEFGGKRHIRYRDLAGHIYGRRAYALTWGLQ-YVNLFM---INTGY----IILAG 121
           K+    E  G+RHIR+R+LA  + G        GL  YV +F+   INTG     I+LAG
Sbjct: 82  KVLDHCEKSGRRHIRFRELAADVLGS-------GLMFYVVIFIQTAINTGIGIGAILLAG 134

Query: 122 QALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTVLSTIYIVI 181
           Q L   +   +    T+KL  FIA+   V  + +  +P+  +L      S +LS  Y  +
Sbjct: 135 QCLDIMYSSLFPQG-TLKLYEFIAMVTVVMMVLS-QLPSFHSLRHINCASLLLSLGYTFL 192

Query: 182 AIWLSVRDGL-KN-PARDYSIPGTTATKIFESIGACANLVFAFNTGMLPEIQATIRQPVV 239
            +   +  GL KN P R+YS+  + + K+F +  + + +   F  G+LPEIQAT+  P  
Sbjct: 193 VVGACINLGLSKNAPKREYSLEHSDSGKVFSAFTSISIIAAIFGNGILPEIQATLAPPAT 252

Query: 240 ENMMKALYFQFSVGVLPMFAVTFVGYWAYGNSSSSYLLNNV---SGP 283
             M+K L   +SV     ++    GYW +GN+SSS +L N+    GP
Sbjct: 253 GKMLKGLLLCYSVIFFTFYSAAISGYWVFGNNSSSNILKNLMPDEGP 299

May be involved in the transport of GABA.

Arabidopsis thaliana (taxid: 3702)

>sp|F4HW02|GAT1_ARATH GABA transporter 1 OS=Arabidopsis thaliana GN=GAT1 PE=1 SV=1

 Score =  103 bits (257), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 88/285 (30%), Positives = 137/285 (48%), Gaps = 21/285 (7%)

Query: 7   VSSSYFFHLEMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLN 66
           V +   F L+   +W+  GF LTT I +  +L  P      LGW AG+  L+    V+  
Sbjct: 18  VDAGSLFVLKSKGTWWHCGFHLTTSIVAPALLSLPYAFKF-LGWAAGISCLVGGAAVTFY 76

Query: 67  ANALIA---KLHEFGGKRHIRYRDLAGHIYGRRAYALTWGLQYVNLFMINTGY------I 117
           +  L++   + H   G R++R+RD+A HI   +     WG  YV    +   Y       
Sbjct: 77  SYTLLSLTLEHHASLGNRYLRFRDMAHHILSPK-----WGRYYVGPIQMAVCYGVVIANA 131

Query: 118 ILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIG-IPNLSALGVWLGVSTVLST 176
           +L GQ LKA +++  + +  MKL  F+ I G  C L  +   P+  +L     +S +L  
Sbjct: 132 LLGGQCLKAMYLVV-QPNGEMKLFEFVIIFG--CLLLVLAQFPSFHSLRYINSLSLLLCL 188

Query: 177 IYIVIAIWLSVRDGLKN--PARDYSIPGTTATKIFESIGACANLVFAFNTGMLPEIQATI 234
           +Y   A   S+  G +   P +DY+I G   T++F    A A +   +  G++PEIQATI
Sbjct: 189 LYSASAAAASIYIGKEPNAPEKDYTIVGDPETRVFGIFNAMAIIATTYGNGIIPEIQATI 248

Query: 235 RQPVVENMMKALYFQFSVGVLPMFAVTFVGYWAYGNSSSSYLLNN 279
             PV   MMK L   + V ++  F V   GYWA+G  ++  +  N
Sbjct: 249 SAPVKGKMMKGLCMCYLVVIMTFFTVAITGYWAFGKKANGLIFTN 293

High affinity gamma-aminobutyric acid (GABA) transporter probably involved in GABA uptake into cells. When expressed in a heterologous system (Xenopus oocytes), imports GABA, butylamine, beta- and L-Alanine, 5-aminovaleric acid, 6-aminocaproic acid and 8-aminocaprylic acid, but does not mediate the transport of proline or glycine betaine.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LRB5|LHT2_ARATH Lysine histidine transporter 2 OS=Arabidopsis thaliana GN=LHT2 PE=1 SV=1

 Score = 90.1 bits (222), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 87/316 (27%), Positives = 148/316 (46%), Gaps = 21/316 (6%)

Query: 20  SWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEF-G 78
            W+   F   T +  A VL  P   M  LGW  GV  ++++ I++L     + ++HE   
Sbjct: 32  KWWYSAFHNVTAMVGAGVLSLP-YAMSNLGWGPGVTIMVMSWIITLYTLWQMVEMHEIVP 90

Query: 79  GKRHIRYRDLAGHIYGRR-AYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHT 137
           GKR  RY +L  H +G +    +    Q +    ++  Y++  G +LK    L   D   
Sbjct: 91  GKRLDRYHELGQHAFGEKLGLWIVVPQQLIVEVGVDIVYMVTGGASLKKVHQLVCPDCKE 150

Query: 138 MKLPYFIAIAGFVCALFAIG-IPNLSALGVWLGVSTVLSTIYIVIAIWLSVRDGLKNPAR 196
           ++  ++I I  F    F I  +PN +++ +    + V+S  Y  IA   SV  G+ +P  
Sbjct: 151 IRTTFWIMI--FASVHFVISHLPNFNSISIISLAAAVMSLTYSTIAWAASVHKGV-HPDV 207

Query: 197 DYSIPGTTAT-KIFESIGACANLVFAF-NTGMLPEIQATI----RQPVVENMMKALYFQF 250
           DYS   +T   K+F  + A  ++ FA+    ++ EIQATI      P    M + +   +
Sbjct: 208 DYSPRASTDVGKVFNFLNALGDVAFAYAGHNVVLEIQATIPSTPEMPSKVPMWRGVIVAY 267

Query: 251 SVGVLPMFAVTFVGYWAYGNSSSSYLLNNVSGPVWMKAAANISAFLQSVIALHVL--FFI 308
            V  +  F V F+GY+ +GNS    +L  +  P+W+ A AN+       + +HV+  + I
Sbjct: 268 IVVAICYFPVAFLGYYIFGNSVDDNILITLEKPIWLIAMANM------FVVIHVIGSYQI 321

Query: 309 FHIPTSSLLSLYLFTE 324
           F +P   +L   L  +
Sbjct: 322 FAMPVFDMLETVLVKK 337

Amino acid-proton symporter. Transporter with a broad specificity for neutral and acidic amino acids. Basic amino acids are only marginally transported. Involved in import of amino acids into the tapetum cells for synthesis of compounds important for microspore structure.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FKS8|LHT1_ARATH Lysine histidine transporter 1 OS=Arabidopsis thaliana GN=LHT1 PE=1 SV=1

 Score = 88.2 bits (217), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 90/321 (28%), Positives = 147/321 (45%), Gaps = 31/321 (9%)

Query: 20  SWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEF-G 78
            W+   F   T +  A VLG P   M  LGW  G+  L+++ +++L     + ++HE   
Sbjct: 37  KWWYSAFHNVTAMVGAGVLGLP-YAMSQLGWGPGIAVLVLSWVITLYTLWQMVEMHEMVP 95

Query: 79  GKRHIRYRDLAGHIYGRRAYALTWGLQYV--NLFMINTG----YIILAGQALKAAFVLFW 132
           GKR  RY +L  H +G +      GL  V     ++  G    Y++  G++LK    L  
Sbjct: 96  GKRFDRYHELGQHAFGEKL-----GLYIVVPQQLIVEIGVCIVYMVTGGKSLKKFHELVC 150

Query: 133 KDDHTMKLPYFIAIAGFVCALFAIG-IPNLSAL-GVWLGVSTVLSTIYIVIAIWLSVRDG 190
            D   +KL YFI I  F    F +  +PN +++ GV L  + V+S  Y  IA   S   G
Sbjct: 151 DDCKPIKLTYFIMI--FASVHFVLSHLPNFNSISGVSLA-AAVMSLSYSTIAWASSASKG 207

Query: 191 LKNPARDYSIPGTTATKIFESIGACANLVFAF-NTGMLPEIQATI----RQPVVENMMKA 245
           ++   +      TTA  +F       ++ FA+    ++ EIQATI     +P    M + 
Sbjct: 208 VQEDVQYGYKAKTTAGTVFNFFSGLGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRG 267

Query: 246 LYFQFSVGVLPMFAVTFVGYWAYGNSSSSYLLNNVSGPVWMKAAANISAFLQSVIALHVL 305
           +   + V  L  F V  VGY+ +GN     +L ++  P W+ A ANI       + +HV+
Sbjct: 268 VIVAYIVVALCYFPVALVGYYIFGNGVEDNILMSLKKPAWLIATANI------FVVIHVI 321

Query: 306 --FFIFHIPTSSLLSLYLFTE 324
             + I+ +P   ++   L  +
Sbjct: 322 GSYQIYAMPVFDMMETLLVKK 342

Amino acid-proton symporter. Transporter with a broad specificity for histidine, lysine, glutamic acid, alanine, serine, proline and glycine. Involved in both apoplastic transport of amino acids in leaves and their uptake by roots.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SR44|LHTL2_ARATH Lysine histidine transporter-like 2 OS=Arabidopsis thaliana GN=At1g67640 PE=2 SV=1

 Score = 87.8 bits (216), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 85/315 (26%), Positives = 150/315 (47%), Gaps = 19/315 (6%)

Query: 20  SWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEF-G 78
            W+   F   T +  A VL  P   M  LGW  GV  +I++ +++      + ++HE   
Sbjct: 32  KWWYSAFHNVTAMVGAGVLSLP-YAMSNLGWGPGVTIMIMSWLITFYTLWQMVQMHEMVP 90

Query: 79  GKRHIRYRDLAGHIYGRR-AYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHT 137
           GKR  RY +L  H +G +    +    Q +    ++  Y++  G++LK    L   D   
Sbjct: 91  GKRFDRYHELGQHAFGEKLGLWIVVPQQLIVEVGVDIVYMVTGGKSLKKIHDLLCTDCKN 150

Query: 138 MKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTVLSTIYIVIAIWLSVRDGLKNPARD 197
           ++  Y+I I   +  + A  +PN +++ +    + V+S  Y  IA   SV+ G+ +P  D
Sbjct: 151 IRTTYWIMIFASIHFVLA-HLPNFNSISIVSLAAAVMSLSYSTIAWATSVKKGV-HPNVD 208

Query: 198 YS-IPGTTATKIFESIGACANLVFAF-NTGMLPEIQATI----RQPVVENMMKALYFQFS 251
           YS    TT+  +F  + A  ++ FA+    ++ EIQATI     +P    M K +   + 
Sbjct: 209 YSSRASTTSGNVFNFLNALGDVAFAYAGHNVVLEIQATIPSTPEKPSKIAMWKGVVVAYI 268

Query: 252 VGVLPMFAVTFVGYWAYGNSSSSYLLNNVSGPVWMKAAANISAFLQSVIALHVL--FFIF 309
           V  +  F V FV Y+ +GNS    +L  +  P+W+ A AN      + + +HV+  + I+
Sbjct: 269 VVAICYFPVAFVCYYIFGNSVDDNILMTLEKPIWLIAIAN------AFVVVHVIGSYQIY 322

Query: 310 HIPTSSLLSLYLFTE 324
            +P   +L  +L  +
Sbjct: 323 AMPVFDMLETFLVKK 337

Amino acid transporter.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	324
15225591	442	proline transporter 1 [Arabidopsis thali	0.895	0.656	0.776	1e-130
357492515	578	Proline transporter [Medicago truncatula	0.895	0.501	0.773	1e-130
297823895	442	hypothetical protein ARALYDRAFT_483024 [	0.895	0.656	0.776	1e-129
21593453	442	proline transporter 1 [Arabidopsis thali	0.895	0.656	0.772	1e-129
449465033	433	PREDICTED: proline transporter 1-like [C	0.876	0.655	0.790	1e-129
255579112	443	amino acid transporter, putative [Ricinu	0.879	0.643	0.772	1e-128
224112617	445	proline transporter [Populus trichocarpa	0.879	0.640	0.814	1e-128
15228183	439	proline transporter 2 [Arabidopsis thali	0.895	0.660	0.766	1e-128
297816894	439	hypothetical protein ARALYDRAFT_486008 [	0.895	0.660	0.762	1e-127
225449240	471	PREDICTED: lysine histidine transporter	0.879	0.605	0.762	1e-126

>gi|15225591|ref|NP_181518.1| proline transporter 1 [Arabidopsis thaliana] gi|145330699|ref|NP_001078025.1| proline transporter 1 [Arabidopsis thaliana] gi|75220394|sp|P92961.1|PROT1_ARATH RecName: Full=Proline transporter 1; Short=AtPROT1 gi|1769901|emb|CAA65052.1| proline transporter 1 [Arabidopsis thaliana] gi|2088642|gb|AAB95274.1| proline transporter 1 [Arabidopsis thaliana] gi|330254651|gb|AEC09745.1| proline transporter 1 [Arabidopsis thaliana] gi|330254652|gb|AEC09746.1| proline transporter 1 [Arabidopsis thaliana]

 Score =  469 bits (1207), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 229/295 (77%), Positives = 262/295 (88%), Gaps = 5/295 (1%)

Query: 19  DSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFG 78
           DSWFQV FVLTTGINSAYVLGY GT+MVPLGWI GVVGL+IAT +SL AN LIAKLHEFG
Sbjct: 34  DSWFQVAFVLTTGINSAYVLGYSGTIMVPLGWIGGVVGLLIATAISLYANTLIAKLHEFG 93

Query: 79  GKRHIRYRDLAGHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTM 138
           G+RHIRYRDLAG IYGR+AY LTWGLQYVNLFMIN G+IILAG ALKA +VLF +DDHTM
Sbjct: 94  GRRHIRYRDLAGFIYGRKAYHLTWGLQYVNLFMINCGFIILAGSALKAVYVLF-RDDHTM 152

Query: 139 KLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTVLSTIYIVIAIWLSVRDGLKNPARDY 198
           KLP+FIAIAG +CA+FAIGIP+LSALGVWLGVST LS IYIV+AI LSVRDG+K P+RDY
Sbjct: 153 KLPHFIAIAGLICAIFAIGIPHLSALGVWLGVSTFLSLIYIVVAIVLSVRDGVKTPSRDY 212

Query: 199 SIPGTTATKIFESIGACANLVFAFNTGMLPEIQATIRQPVVENMMKALYFQFSVGVLPMF 258
            I G++ +K+F   GA ANLVFAFNTGMLPEIQAT+RQPVV+NMMKALYFQF+ GVLPM+
Sbjct: 213 EIQGSSLSKLFTITGAAANLVFAFNTGMLPEIQATVRQPVVKNMMKALYFQFTAGVLPMY 272

Query: 259 AVTFVGYWAYGNSSSSYLLNNVSGPVWMKAAANISAFLQSVIALHVLFFIFHIPT 313
           AVTF+GYWAYG+S+S+YLLN+V+GP+W+KA AN+SA LQSVI+LH    IF  PT
Sbjct: 273 AVTFIGYWAYGSSTSTYLLNSVNGPLWVKALANVSAILQSVISLH----IFASPT 323

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357492515|ref|XP_003616546.1| Proline transporter [Medicago truncatula] gi|355517881|gb|AES99504.1| Proline transporter [Medicago truncatula]

 Score =  469 bits (1207), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 225/291 (77%), Positives = 260/291 (89%), Gaps = 1/291 (0%)

Query: 14  HLEMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAK 73
           H    DSWFQVGFVLTTGINSAYVLGY GT+MVPLGWI GVVGLI+AT +SL ANALIA 
Sbjct: 165 HQISTDSWFQVGFVLTTGINSAYVLGYSGTIMVPLGWIGGVVGLILATAISLYANALIAM 224

Query: 74  LHEFGGKRHIRYRDLAGHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWK 133
           LHEFGG RHIRYRDLAG+IYGR+AY+LTW LQYVNLFMINTG+IILAG ALKA +VLF +
Sbjct: 225 LHEFGGTRHIRYRDLAGYIYGRKAYSLTWTLQYVNLFMINTGFIILAGSALKAVYVLF-R 283

Query: 134 DDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTVLSTIYIVIAIWLSVRDGLKN 193
           DD  MKLP+FIAIAG VCA+FAI IP+LSALG+WLG STVLS  YIVIA+ LS++DG+K+
Sbjct: 284 DDDQMKLPHFIAIAGLVCAMFAICIPHLSALGIWLGFSTVLSLAYIVIALVLSLKDGIKS 343

Query: 194 PARDYSIPGTTATKIFESIGACANLVFAFNTGMLPEIQATIRQPVVENMMKALYFQFSVG 253
           PARDYS+PGT+ +KIF +IGA ANLVFA+NTGMLPEIQATIRQPVV+NMMKALYFQF+VG
Sbjct: 344 PARDYSVPGTSTSKIFTTIGASANLVFAYNTGMLPEIQATIRQPVVKNMMKALYFQFTVG 403

Query: 254 VLPMFAVTFVGYWAYGNSSSSYLLNNVSGPVWMKAAANISAFLQSVIALHV 304
           VLP++ VTF GYWAYG+S+ ++LLNNV GP+W+K  ANI+AFLQSVIALH+
Sbjct: 404 VLPLYLVTFAGYWAYGSSTQTFLLNNVKGPIWVKVVANITAFLQSVIALHI 454

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297823895|ref|XP_002879830.1| hypothetical protein ARALYDRAFT_483024 [Arabidopsis lyrata subsp. lyrata] gi|297325669|gb|EFH56089.1| hypothetical protein ARALYDRAFT_483024 [Arabidopsis lyrata subsp. lyrata]

 Score =  468 bits (1204), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 229/295 (77%), Positives = 261/295 (88%), Gaps = 5/295 (1%)

Query: 19  DSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFG 78
           DSWFQV FVLTTGINSAYVLGY GT+MVPLGWI GVVGLI+AT +SL AN LIAKLHEFG
Sbjct: 34  DSWFQVAFVLTTGINSAYVLGYSGTIMVPLGWIGGVVGLILATAISLYANTLIAKLHEFG 93

Query: 79  GKRHIRYRDLAGHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTM 138
           G+RHIRYRDLAG IYGR+AY LTWGLQYVNLFMIN G+IILAG ALKA +VLF +DDHTM
Sbjct: 94  GRRHIRYRDLAGFIYGRKAYHLTWGLQYVNLFMINCGFIILAGSALKAVYVLF-RDDHTM 152

Query: 139 KLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTVLSTIYIVIAIWLSVRDGLKNPARDY 198
           KLP+FIAIAG +CA+FAIGIP+LSALGVWL VST LS IYIV+AI LSVRDG+K P+RDY
Sbjct: 153 KLPHFIAIAGLICAIFAIGIPHLSALGVWLAVSTFLSLIYIVVAIVLSVRDGVKTPSRDY 212

Query: 199 SIPGTTATKIFESIGACANLVFAFNTGMLPEIQATIRQPVVENMMKALYFQFSVGVLPMF 258
            I G++ +K+F   GA ANLVFAFNTGMLPEIQAT+RQPVV+NMMKALYFQF+ GVLPM+
Sbjct: 213 EIQGSSLSKLFTITGAAANLVFAFNTGMLPEIQATVRQPVVKNMMKALYFQFTAGVLPMY 272

Query: 259 AVTFVGYWAYGNSSSSYLLNNVSGPVWMKAAANISAFLQSVIALHVLFFIFHIPT 313
           AVTF+GYWAYG+S+S+YLLN+V+GP+W+KA ANISA LQSVI+LH    IF  PT
Sbjct: 273 AVTFIGYWAYGSSTSTYLLNSVNGPLWVKALANISAILQSVISLH----IFASPT 323

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21593453|gb|AAM65420.1| proline transporter 1 [Arabidopsis thaliana]

 Score =  468 bits (1203), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 228/295 (77%), Positives = 261/295 (88%), Gaps = 5/295 (1%)

Query: 19  DSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFG 78
           DSWFQV FVLTTGINSAYVLGY GT+MVPLGWI GVVGL+IAT +SL  N LIAKLHEFG
Sbjct: 34  DSWFQVAFVLTTGINSAYVLGYSGTIMVPLGWIGGVVGLLIATAISLYTNTLIAKLHEFG 93

Query: 79  GKRHIRYRDLAGHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTM 138
           G+RHIRYRDLAG IYGR+AY LTWGLQYVNLFMIN G+IILAG ALKA +VLF +DDHTM
Sbjct: 94  GRRHIRYRDLAGFIYGRKAYHLTWGLQYVNLFMINCGFIILAGSALKAVYVLF-RDDHTM 152

Query: 139 KLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTVLSTIYIVIAIWLSVRDGLKNPARDY 198
           KLP+FIAIAG +CA+FAIGIP+LSALGVWLGVST LS IYIV+AI LSVRDG+K P+RDY
Sbjct: 153 KLPHFIAIAGLICAIFAIGIPHLSALGVWLGVSTFLSLIYIVVAIVLSVRDGVKTPSRDY 212

Query: 199 SIPGTTATKIFESIGACANLVFAFNTGMLPEIQATIRQPVVENMMKALYFQFSVGVLPMF 258
            I G++ +K+F   GA ANLVFAFNTGMLPEIQAT+RQPVV+NMMKALYFQF+ GVLPM+
Sbjct: 213 EIQGSSLSKLFTITGAAANLVFAFNTGMLPEIQATVRQPVVKNMMKALYFQFTAGVLPMY 272

Query: 259 AVTFVGYWAYGNSSSSYLLNNVSGPVWMKAAANISAFLQSVIALHVLFFIFHIPT 313
           AVTF+GYWAYG+S+S+YLLN+V+GP+W+KA AN+SA LQSVI+LH    IF  PT
Sbjct: 273 AVTFIGYWAYGSSTSTYLLNSVNGPLWVKALANVSAILQSVISLH----IFASPT 323

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449465033|ref|XP_004150233.1| PREDICTED: proline transporter 1-like [Cucumis sativus] gi|449506530|ref|XP_004162775.1| PREDICTED: proline transporter 1-like [Cucumis sativus]

 Score =  466 bits (1200), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 226/286 (79%), Positives = 257/286 (89%), Gaps = 2/286 (0%)

Query: 19  DSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFG 78
           DSWFQ GFVLTTGINSAYVLGY GT+MVPLGWI GVVGLI AT +SL AN LIAKLHEFG
Sbjct: 26  DSWFQAGFVLTTGINSAYVLGYSGTIMVPLGWIGGVVGLIAATAISLYANCLIAKLHEFG 85

Query: 79  GKRHIRYRDLAGHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTM 138
           GKRHIRYRDLAG IYGR AY+LTWGLQY NLFMIN GYIILAGQALKA +VLF  DDH M
Sbjct: 86  GKRHIRYRDLAGFIYGRTAYSLTWGLQYANLFMINVGYIILAGQALKALYVLF-SDDHVM 144

Query: 139 KLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTVLSTIYIVIAIWLSVRDGLKNPARDY 198
           KLPYFIAIAG VCALFAI IP+LSAL +WLG STV S +YI++A  LS+RDG+K PA DY
Sbjct: 145 KLPYFIAIAGVVCALFAISIPHLSALKIWLGFSTVFSLVYIIVAFILSLRDGVKTPA-DY 203

Query: 199 SIPGTTATKIFESIGACANLVFAFNTGMLPEIQATIRQPVVENMMKALYFQFSVGVLPMF 258
           S+PG++ +KIF +IGA ANLVFAFNTGMLPEIQAT+RQPVV+NM+KALYFQF+ GVLPM+
Sbjct: 204 SLPGSSTSKIFTTIGASANLVFAFNTGMLPEIQATVRQPVVKNMLKALYFQFTAGVLPMY 263

Query: 259 AVTFVGYWAYGNSSSSYLLNNVSGPVWMKAAANISAFLQSVIALHV 304
           AVTF+GYWAYG+S+S+YLLN+V+GP+W+KAAANISAFLQ+VIALH+
Sbjct: 264 AVTFIGYWAYGSSTSTYLLNSVNGPIWIKAAANISAFLQTVIALHI 309

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255579112|ref|XP_002530404.1| amino acid transporter, putative [Ricinus communis] gi|223530053|gb|EEF31974.1| amino acid transporter, putative [Ricinus communis]

 Score =  464 bits (1195), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 221/286 (77%), Positives = 261/286 (91%), Gaps = 1/286 (0%)

Query: 19  DSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFG 78
           DSWFQVGFVLTTGINSAYVLGY G +MVPLGWIAGVVGL++A  +SL AN+L+AKLHE+G
Sbjct: 35  DSWFQVGFVLTTGINSAYVLGYSGIIMVPLGWIAGVVGLVLAAAISLYANSLVAKLHEYG 94

Query: 79  GKRHIRYRDLAGHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTM 138
           GKRHIRYRDLAG+IYG++AY++TWGLQYVNLFMINTGYIILAGQALKA +VL+ +DDH M
Sbjct: 95  GKRHIRYRDLAGYIYGKKAYSITWGLQYVNLFMINTGYIILAGQALKAVYVLY-RDDHEM 153

Query: 139 KLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTVLSTIYIVIAIWLSVRDGLKNPARDY 198
           KLPYFIAIAGFVC LFAI  P+LSAL +WLGVSTVLS IYI++AI LS++DG+  P RDY
Sbjct: 154 KLPYFIAIAGFVCTLFAIATPHLSALRIWLGVSTVLSLIYIIVAIVLSIKDGVNAPPRDY 213

Query: 199 SIPGTTATKIFESIGACANLVFAFNTGMLPEIQATIRQPVVENMMKALYFQFSVGVLPMF 258
           SIPG++  KIF SIG  A+LVFAFNTGMLPEIQATIRQPVV NMMKALYFQFSVG+LP+F
Sbjct: 214 SIPGSSTAKIFTSIGGGASLVFAFNTGMLPEIQATIRQPVVSNMMKALYFQFSVGLLPLF 273

Query: 259 AVTFVGYWAYGNSSSSYLLNNVSGPVWMKAAANISAFLQSVIALHV 304
           AVT++GYWAYGNS+++YLL++V+GP+W+K  AN++AFLQSVIALH+
Sbjct: 274 AVTWIGYWAYGNSTTTYLLSSVNGPIWVKTMANLAAFLQSVIALHI 319

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224112617|ref|XP_002316242.1| proline transporter [Populus trichocarpa] gi|222865282|gb|EEF02413.1| proline transporter [Populus trichocarpa]

 Score =  463 bits (1191), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 233/286 (81%), Positives = 263/286 (91%), Gaps = 1/286 (0%)

Query: 19  DSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFG 78
           DSWFQVGFVLTTGINSAYVLGY GT+MVPLGWI GVVGLIIAT +SL AN+LIA+LHEFG
Sbjct: 37  DSWFQVGFVLTTGINSAYVLGYSGTIMVPLGWIPGVVGLIIATAISLYANSLIAELHEFG 96

Query: 79  GKRHIRYRDLAGHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTM 138
           G+RHIRYRDLAG IYGR+AY+LTWGLQYVNLFMINTGYIILAG ALKA +VLF  DDH M
Sbjct: 97  GRRHIRYRDLAGFIYGRKAYSLTWGLQYVNLFMINTGYIILAGSALKAVYVLF-SDDHVM 155

Query: 139 KLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTVLSTIYIVIAIWLSVRDGLKNPARDY 198
           KLPYFIAI+GFVCALFA+ IP+LSAL +WLGVSTV S IYIV+A  LSV+DG++ PARDY
Sbjct: 156 KLPYFIAISGFVCALFAMSIPHLSALRLWLGVSTVFSLIYIVVAFVLSVKDGIEAPARDY 215

Query: 199 SIPGTTATKIFESIGACANLVFAFNTGMLPEIQATIRQPVVENMMKALYFQFSVGVLPMF 258
           SIPGTT +KIF +IGA ANLVFAFNTGMLPEIQATI+QPVV NMMK+LYFQFS GVLPM+
Sbjct: 216 SIPGTTRSKIFTTIGASANLVFAFNTGMLPEIQATIKQPVVSNMMKSLYFQFSAGVLPMY 275

Query: 259 AVTFVGYWAYGNSSSSYLLNNVSGPVWMKAAANISAFLQSVIALHV 304
           AVTF+GYWAYG+S+SSYLL++V+GPVW+KA ANISAFLQ+VIALH+
Sbjct: 276 AVTFIGYWAYGSSTSSYLLSSVNGPVWVKALANISAFLQTVIALHI 321

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15228183|ref|NP_191133.1| proline transporter 2 [Arabidopsis thaliana] gi|75220395|sp|P92962.1|PROT2_ARATH RecName: Full=Proline transporter 2; Short=AtPROT2 gi|1769903|emb|CAA65053.1| proline transporter 2 [Arabidopsis thaliana] gi|7263562|emb|CAB81599.1| proline transporter 2 [Arabidopsis thaliana] gi|19698891|gb|AAL91181.1| proline transporter 2 [Arabidopsis thaliana] gi|31376371|gb|AAP49512.1| At3g55740 [Arabidopsis thaliana] gi|332645907|gb|AEE79428.1| proline transporter 2 [Arabidopsis thaliana]

 Score =  462 bits (1190), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 226/295 (76%), Positives = 259/295 (87%), Gaps = 5/295 (1%)

Query: 19  DSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFG 78
           DSWFQV FVLTTGINSAYVLGY GTVMVPLGWI GVVGLI+AT +SL AN LIAKLHEFG
Sbjct: 31  DSWFQVAFVLTTGINSAYVLGYSGTVMVPLGWIGGVVGLILATAISLYANTLIAKLHEFG 90

Query: 79  GKRHIRYRDLAGHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTM 138
           GKRHIRYRDLAG IYG++ Y +TWGLQYVNLFMIN G+IILAG ALKA +VLF +DD  M
Sbjct: 91  GKRHIRYRDLAGFIYGKKMYRVTWGLQYVNLFMINCGFIILAGSALKAVYVLF-RDDSLM 149

Query: 139 KLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTVLSTIYIVIAIWLSVRDGLKNPARDY 198
           KLP+FIAIAG VCA+FAIGIP+LSALG+WLGVST+LS IYI++AI LS +DG+  P RDY
Sbjct: 150 KLPHFIAIAGVVCAIFAIGIPHLSALGIWLGVSTILSIIYIIVAIVLSAKDGVNKPERDY 209

Query: 199 SIPGTTATKIFESIGACANLVFAFNTGMLPEIQATIRQPVVENMMKALYFQFSVGVLPMF 258
           +I G++  K+F   GA ANLVFAFNTGMLPEIQAT++QPVV+NMMKALYFQF+VGVLPM+
Sbjct: 210 NIQGSSINKLFTITGAAANLVFAFNTGMLPEIQATVKQPVVKNMMKALYFQFTVGVLPMY 269

Query: 259 AVTFVGYWAYGNSSSSYLLNNVSGPVWMKAAANISAFLQSVIALHVLFFIFHIPT 313
           AVTF+GYWAYG+S+S+YLLN+VSGPVW+KA ANISAFLQSVI+LH    IF  PT
Sbjct: 270 AVTFIGYWAYGSSTSTYLLNSVSGPVWVKALANISAFLQSVISLH----IFASPT 320

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297816894|ref|XP_002876330.1| hypothetical protein ARALYDRAFT_486008 [Arabidopsis lyrata subsp. lyrata] gi|297322168|gb|EFH52589.1| hypothetical protein ARALYDRAFT_486008 [Arabidopsis lyrata subsp. lyrata]

 Score =  461 bits (1186), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 225/295 (76%), Positives = 258/295 (87%), Gaps = 5/295 (1%)

Query: 19  DSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFG 78
           DSWFQ+ FVLTTGINSAYVLGY GTVMVPLGWI GVVGLI+AT +SL AN LIAKLHEFG
Sbjct: 31  DSWFQIAFVLTTGINSAYVLGYSGTVMVPLGWIGGVVGLILATAISLYANTLIAKLHEFG 90

Query: 79  GKRHIRYRDLAGHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTM 138
           GKRHIRYRDLAG IYG++ Y +TWGLQYVNLFMIN G+IILAG ALKA +VLF +DD  M
Sbjct: 91  GKRHIRYRDLAGFIYGKKMYRVTWGLQYVNLFMINCGFIILAGSALKAVYVLF-RDDSLM 149

Query: 139 KLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTVLSTIYIVIAIWLSVRDGLKNPARDY 198
           KLP+FIAIAG VCA+FAIGIP+LSALG+WLGVST+LS IYIV+AI LS +DG+  P RDY
Sbjct: 150 KLPHFIAIAGVVCAIFAIGIPHLSALGIWLGVSTILSIIYIVVAIVLSAKDGVNKPERDY 209

Query: 199 SIPGTTATKIFESIGACANLVFAFNTGMLPEIQATIRQPVVENMMKALYFQFSVGVLPMF 258
           +I G++  K+F   GA ANLVFAFNTGMLPEIQAT++QPVV NMMKALYFQF+VGVLPM+
Sbjct: 210 NIQGSSINKLFTITGAAANLVFAFNTGMLPEIQATVKQPVVRNMMKALYFQFTVGVLPMY 269

Query: 259 AVTFVGYWAYGNSSSSYLLNNVSGPVWMKAAANISAFLQSVIALHVLFFIFHIPT 313
           AVTF+GYWAYG+S+S+YLLN+VSGP+W+KA ANISAFLQSVI+LH    IF  PT
Sbjct: 270 AVTFIGYWAYGSSTSTYLLNSVSGPLWVKALANISAFLQSVISLH----IFASPT 320

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225449240|ref|XP_002280217.1| PREDICTED: lysine histidine transporter 2-like [Vitis vinifera]

 Score =  458 bits (1179), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 218/286 (76%), Positives = 255/286 (89%), Gaps = 1/286 (0%)

Query: 19  DSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFG 78
           DSW QVGFVLTTGINSA+VLGY GT MVPLGW  GV+G ++A  +SL AN+L+AKLHEFG
Sbjct: 63  DSWLQVGFVLTTGINSAFVLGYSGTTMVPLGWAGGVIGFLLAAGISLYANSLVAKLHEFG 122

Query: 79  GKRHIRYRDLAGHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTM 138
           GKRHIRYRDLAG+IYG++AY LTW LQYVNLFMINTGY+ILAGQALKA +VLF +DD  M
Sbjct: 123 GKRHIRYRDLAGYIYGKKAYTLTWALQYVNLFMINTGYLILAGQALKAVYVLF-RDDGGM 181

Query: 139 KLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTVLSTIYIVIAIWLSVRDGLKNPARDY 198
           KLPYFIAI GFVCA+FAIGIP+LSALG+WLG ST LS IYIVIA  LS+ DG+K P+RDY
Sbjct: 182 KLPYFIAIGGFVCAIFAIGIPHLSALGIWLGFSTCLSLIYIVIAFVLSLTDGIKAPSRDY 241

Query: 199 SIPGTTATKIFESIGACANLVFAFNTGMLPEIQATIRQPVVENMMKALYFQFSVGVLPMF 258
           SIPGT A+K+F  IGA ANLVFAFNTGMLPEIQATIRQPVV+NMMKALYFQF+ G+LP++
Sbjct: 242 SIPGTEASKVFSIIGAAANLVFAFNTGMLPEIQATIRQPVVKNMMKALYFQFTAGILPLY 301

Query: 259 AVTFVGYWAYGNSSSSYLLNNVSGPVWMKAAANISAFLQSVIALHV 304
           AV F+GYWAYG+++S+YLLN+VSGPVW+K  AN++AFLQ+VIALH+
Sbjct: 302 AVVFMGYWAYGSTTSTYLLNSVSGPVWVKTMANLAAFLQTVIALHI 347

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	324
TAIR|locus:2061156	442	PROT1 "proline transporter 1"	0.879	0.644	0.751	3.1e-115
TAIR|locus:2078981	439	PROT2 "proline transporter 2"	0.879	0.649	0.737	5.2e-113
TAIR|locus:2044835	436	ProT3 "proline transporter 3"	0.879	0.653	0.727	1.1e-110
TAIR|locus:2199978	451	AT1G08230 [Arabidopsis thalian	0.759	0.545	0.329	1.2e-26
TAIR|locus:2152995	452	AT5G41800 [Arabidopsis thalian	0.753	0.539	0.329	5.8e-24
UNIPROTKB|Q85V22	441	ht "Histidine amino acid trans	0.895	0.657	0.292	5.5e-22
TAIR|locus:2008605	441	AT1G67640 "AT1G67640" [Arabido	0.898	0.659	0.269	4.4e-20
TAIR|locus:2013056	448	AT1G71680 [Arabidopsis thalian	0.922	0.667	0.257	4.6e-20
TAIR|locus:2024071	441	LHT2 "lysine histidine transpo	0.898	0.659	0.269	9.4e-20
TAIR|locus:2154815	446	LHT1 "lysine histidine transpo	0.895	0.650	0.274	1.6e-19

TAIR|locus:2061156 PROT1 "proline transporter 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1136 (405.0 bits), Expect = 3.1e-115, P = 3.1e-115
 Identities = 215/286 (75%), Positives = 244/286 (85%)

Query:    19 DSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFG 78
             DSWFQV FVLTTGINSAYVLGY GT+MVPLGWI GVVGL+IAT +SL AN LIAKLHEFG
Sbjct:    34 DSWFQVAFVLTTGINSAYVLGYSGTIMVPLGWIGGVVGLLIATAISLYANTLIAKLHEFG 93

Query:    79 GKRHIRYRDLAGHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTM 138
             G+RHIRYRDLAG IYGR+AY LTWGLQYVNLFMIN G+IILAG ALKA +VLF +DDHTM
Sbjct:    94 GRRHIRYRDLAGFIYGRKAYHLTWGLQYVNLFMINCGFIILAGSALKAVYVLF-RDDHTM 152

Query:   139 KLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTVLSTIYIVIAIWLSVRDGLKNPARDY 198
             KLP+FIAIAG +CA+FAIGIP+LSALGVWLGVST LS IYIV+AI LSVRDG+K P+RDY
Sbjct:   153 KLPHFIAIAGLICAIFAIGIPHLSALGVWLGVSTFLSLIYIVVAIVLSVRDGVKTPSRDY 212

Query:   199 SIPGTTATKIFESIGACANLVFAFNTGMLPEIQATIRQPVVENMMKALYFQFSVGVLPMF 258
              I G++ +K+F   GA ANLVFAFNTGMLPEIQAT+RQPVV+NMMKALYFQF+ GVLPM+
Sbjct:   213 EIQGSSLSKLFTITGAAANLVFAFNTGMLPEIQATVRQPVVKNMMKALYFQFTAGVLPMY 272

Query:   259 AVTFVGYWAXXXXXXXXXXXXXXXPVWMKAAANISAFLQSVIALHV 304
             AVTF+GYWA               P+W+KA AN+SA LQSVI+LH+
Sbjct:   273 AVTFIGYWAYGSSTSTYLLNSVNGPLWVKALANVSAILQSVISLHI 318

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006865 "amino acid transport" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0015193 "L-proline transmembrane transporter activity" evidence=IGI

GO:0015824 "proline transport" evidence=IGI

TAIR|locus:2078981 PROT2 "proline transporter 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1115 (397.6 bits), Expect = 5.2e-113, P = 5.2e-113
 Identities = 211/286 (73%), Positives = 241/286 (84%)

Query:    19 DSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFG 78
             DSWFQV FVLTTGINSAYVLGY GTVMVPLGWI GVVGLI+AT +SL AN LIAKLHEFG
Sbjct:    31 DSWFQVAFVLTTGINSAYVLGYSGTVMVPLGWIGGVVGLILATAISLYANTLIAKLHEFG 90

Query:    79 GKRHIRYRDLAGHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTM 138
             GKRHIRYRDLAG IYG++ Y +TWGLQYVNLFMIN G+IILAG ALKA +VLF +DD  M
Sbjct:    91 GKRHIRYRDLAGFIYGKKMYRVTWGLQYVNLFMINCGFIILAGSALKAVYVLF-RDDSLM 149

Query:   139 KLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTVLSTIYIVIAIWLSVRDGLKNPARDY 198
             KLP+FIAIAG VCA+FAIGIP+LSALG+WLGVST+LS IYI++AI LS +DG+  P RDY
Sbjct:   150 KLPHFIAIAGVVCAIFAIGIPHLSALGIWLGVSTILSIIYIIVAIVLSAKDGVNKPERDY 209

Query:   199 SIPGTTATKIFESIGACANLVFAFNTGMLPEIQATIRQPVVENMMKALYFQFSVGVLPMF 258
             +I G++  K+F   GA ANLVFAFNTGMLPEIQAT++QPVV+NMMKALYFQF+VGVLPM+
Sbjct:   210 NIQGSSINKLFTITGAAANLVFAFNTGMLPEIQATVKQPVVKNMMKALYFQFTVGVLPMY 269

Query:   259 AVTFVGYWAXXXXXXXXXXXXXXXPVWMKAAANISAFLQSVIALHV 304
             AVTF+GYWA               PVW+KA ANISAFLQSVI+LH+
Sbjct:   270 AVTFIGYWAYGSSTSTYLLNSVSGPVWVKALANISAFLQSVISLHI 315

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006865 "amino acid transport" evidence=ISS;RCA

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0015824 "proline transport" evidence=IGI;RCA

GO:0043090 "amino acid import" evidence=RCA

GO:0015193 "L-proline transmembrane transporter activity" evidence=IGI

TAIR|locus:2044835 ProT3 "proline transporter 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 1093 (389.8 bits), Expect = 1.1e-110, P = 1.1e-110
 Identities = 208/286 (72%), Positives = 237/286 (82%)

Query:    19 DSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFG 78
             DSWFQ  FVLTT INSAYVLGY GTVMVPLGWI GVVGLI+AT +SL AN L+AKLHEFG
Sbjct:    28 DSWFQAAFVLTTSINSAYVLGYSGTVMVPLGWIGGVVGLILATAISLYANTLVAKLHEFG 87

Query:    79 GKRHIRYRDLAGHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTM 138
             GKRHIRYRDLAG IYGR+AY LTW LQYVNLFMIN G+IILAG ALKA +VLF +DDH M
Sbjct:    88 GKRHIRYRDLAGFIYGRKAYCLTWVLQYVNLFMINCGFIILAGSALKAVYVLF-RDDHAM 146

Query:   139 KLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTVLSTIYIVIAIWLSVRDGLKNPARDY 198
             KLP+FIAIAG +CA+FAIGIP+LSALG+WL VST+LS IYIV+AI LSV+DG+K P+RDY
Sbjct:   147 KLPHFIAIAGLICAVFAIGIPHLSALGIWLAVSTILSLIYIVVAIVLSVKDGVKAPSRDY 206

Query:   199 SIPGTTATKIFESIGACANLVFAFNTGMLPEIQATIRQPVVENMMKALYFQFSVGVLPMF 258
              I G+  +K+F   GA A LVF FNTGMLPEIQAT++QPVV+NMMKALYFQF+VGVLPMF
Sbjct:   207 EIQGSPLSKLFTITGAAATLVFVFNTGMLPEIQATVKQPVVKNMMKALYFQFTVGVLPMF 266

Query:   259 AVTFVGYWAXXXXXXXXXXXXXXXPVWMKAAANISAFLQSVIALHV 304
             AV F+GYWA               P+W+KA ANISA LQSVI+LH+
Sbjct:   267 AVVFIGYWAYGSSTSPYLLNNVNGPLWVKALANISAILQSVISLHI 312

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006865 "amino acid transport" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0015193 "L-proline transmembrane transporter activity" evidence=IGI

GO:0015824 "proline transport" evidence=IGI;RCA

TAIR|locus:2199978 AT1G08230 [Arabidopsis thaliana (taxid:3702)]

 Score = 301 (111.0 bits), Expect = 1.2e-26, P = 1.2e-26
 Identities = 88/267 (32%), Positives = 130/267 (48%)

Query:    13 FHLEMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGV---VGLIIATIVSLNANA 69
             F L+   +W+  GF LTT I +  +L  P      LGW AG+   VG    T  S    +
Sbjct:    24 FVLKSKGTWWHCGFHLTTSIVAPALLSLPYAFKF-LGWAAGISCLVGGAAVTFYSYTLLS 82

Query:    70 LIAKLHEFGGKRHIRYRDLAGHIYGRRAYALTWGLQYVNLFMINTGY-IILA-----GQA 123
             L  + H   G R++R+RD+A HI   +     WG  YV    +   Y +++A     GQ 
Sbjct:    83 LTLEHHASLGNRYLRFRDMAHHILSPK-----WGRYYVGPIQMAVCYGVVIANALLGGQC 137

Query:   124 LKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIG-IPNLSALGVWLGVSTVLSTIYIVIA 182
             LKA +++  + +  MKL  F+ I G  C L  +   P+  +L     +S +L  +Y   A
Sbjct:   138 LKAMYLVV-QPNGEMKLFEFVIIFG--CLLLVLAQFPSFHSLRYINSLSLLLCLLYSASA 194

Query:   183 IWLSVRDGLK-N-PARDYSIPGTTATKIFESIGACANLVFAFNTGMLPEIQATIRQPVVE 240
                S+  G + N P +DY+I G   T++F    A A +   +  G++PEIQATI  PV  
Sbjct:   195 AAASIYIGKEPNAPEKDYTIVGDPETRVFGIFNAMAIIATTYGNGIIPEIQATISAPVKG 254

Query:   241 NMMKALYFQFSVGVLPMFAVTFVGYWA 267
              MMK L   + V ++  F V   GYWA
Sbjct:   255 KMMKGLCMCYLVVIMTFFTVAITGYWA 281

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0015185 "gamma-aminobutyric acid transmembrane transporter activity" evidence=IDA

GO:0015812 "gamma-aminobutyric acid transport" evidence=IGI

TAIR|locus:2152995 AT5G41800 [Arabidopsis thaliana (taxid:3702)]

 Score = 278 (102.9 bits), Expect = 5.8e-24, P = 5.8e-24
 Identities = 88/267 (32%), Positives = 131/267 (49%)

Query:    13 FHLEMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIA 72
             F L+    W+  GF LTT I    +L  P      LGW  G V L    +V+  A  L++
Sbjct:    23 FVLQSKGEWWHAGFHLTTAIVGPTILTLPYAFR-GLGWWLGFVCLTTMGLVTFYAYYLMS 81

Query:    73 KL--H-EFGGKRHIRYRDLAGHIYGRRAYALTWGLQ-YVNLFM---INTGY----IILAG 121
             K+  H E  G+RHIR+R+LA  + G        GL  YV +F+   INTG     I+LAG
Sbjct:    82 KVLDHCEKSGRRHIRFRELAADVLGS-------GLMFYVVIFIQTAINTGIGIGAILLAG 134

Query:   122 QALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTVLSTIYIVI 181
             Q L   +   +    T+KL  FIA+   V  + +  +P+  +L      S +LS  Y  +
Sbjct:   135 QCLDIMYSSLFPQG-TLKLYEFIAMVTVVMMVLS-QLPSFHSLRHINCASLLLSLGYTFL 192

Query:   182 AIWLSVRDGL-KN-PARDYSIPGTTATKIFESIGACANLVFAFNTGMLPEIQATIRQPVV 239
              +   +  GL KN P R+YS+  + + K+F +  + + +   F  G+LPEIQAT+  P  
Sbjct:   193 VVGACINLGLSKNAPKREYSLEHSDSGKVFSAFTSISIIAAIFGNGILPEIQATLAPPAT 252

Query:   240 ENMMKALYFQFSVGVLPMFAVTFVGYW 266
               M+K L   +SV     ++    GYW
Sbjct:   253 GKMLKGLLLCYSVIFFTFYSAAISGYW 279

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006865 "amino acid transport" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0015824 "proline transport" evidence=RCA

UNIPROTKB|Q85V22 ht "Histidine amino acid transporter" [Oryza sativa Indica Group (taxid:39946)]

 Score = 260 (96.6 bits), Expect = 5.5e-22, P = 5.5e-22
 Identities = 92/315 (29%), Positives = 145/315 (46%)

Query:    21 WFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEF-GG 79
             W+   F   T +  A VL  P   M  LGW  G+  LI++ I++L     + ++HE   G
Sbjct:    31 WWYSAFHNVTAMVGAGVLSLP-YAMSELGWGPGIAVLILSWIITLYTLWQMVEMHEMVPG 89

Query:    80 KRHIRYRDLAGHIYGRR-AYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDD--H 136
             KR  RY +L  H +G +    +    Q V    +N  Y++  G++LK    +  +     
Sbjct:    90 KRFDRYHELGQHAFGEKLGLWIVVPQQLVVEVGVNIVYMVTGGKSLKKFHDVLCEGHGCK 149

Query:   137 TMKLPYFIAIAGFVCALFAIG-IPNLSAL-GVWLGVSTVLSTIYIVIAIWLSVRDGLKNP 194
              +KL YFI I  F    F +  +PN +++ GV L  + V+S  Y  IA   SV  G K  
Sbjct:   150 NIKLTYFIMI--FASVHFVLSQLPNFNSISGVSLAAA-VMSLSYSTIAWGASVDKG-KVA 205

Query:   195 ARDYSIPGTTAT-KIFESIGACANLVFAF-NTGMLPEIQATI----RQPVVENMMKALYF 248
               DY +  TT+T K+F    A  ++ FA+    ++ EIQATI     +P  + M K +  
Sbjct:   206 DVDYHLRATTSTGKVFGFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKKPMWKGVVV 265

Query:   249 QFSVGVLPMFAVTFVGYWAXXXXXXXXXXXXXXXPVWMKAAANISAFLQSVIALHVL--F 306
              + +  L  F V  VGYWA               P W+ A AN+      ++ +HV+  +
Sbjct:   266 AYIIVALCYFPVALVGYWAFGNHVDDNILITLSRPKWLIALANM------MVVIHVIGSY 319

Query:   307 FIFHIPTSSLLSLYL 321
              I+ +P   ++   L
Sbjct:   320 QIYAMPVFDMIETVL 334

GO:0009536 "plastid" evidence=IC

TAIR|locus:2008605 AT1G67640 "AT1G67640" [Arabidopsis thaliana (taxid:3702)]

 Score = 243 (90.6 bits), Expect = 4.4e-20, P = 4.4e-20
 Identities = 84/312 (26%), Positives = 143/312 (45%)

Query:    21 WFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEF-GG 79
             W+   F   T +  A VL  P   M  LGW  GV  +I++ +++      + ++HE   G
Sbjct:    33 WWYSAFHNVTAMVGAGVLSLP-YAMSNLGWGPGVTIMIMSWLITFYTLWQMVQMHEMVPG 91

Query:    80 KRHIRYRDLAGHIYGRR-AYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTM 138
             KR  RY +L  H +G +    +    Q +    ++  Y++  G++LK    L   D   +
Sbjct:    92 KRFDRYHELGQHAFGEKLGLWIVVPQQLIVEVGVDIVYMVTGGKSLKKIHDLLCTDCKNI 151

Query:   139 KLPYFIAIAGFVCALFAIG-IPNLSALGVWLGVSTVLSTIYIVIAIWLSVRDGLKNPARD 197
             +  Y+I I  F    F +  +PN +++ +    + V+S  Y  IA   SV+ G+ +P  D
Sbjct:   152 RTTYWIMI--FASIHFVLAHLPNFNSISIVSLAAAVMSLSYSTIAWATSVKKGV-HPNVD 208

Query:   198 YSI-PGTTATKIFESIGACANLVFAF-NTGMLPEIQATI----RQPVVENMMKALYFQFS 251
             YS    TT+  +F  + A  ++ FA+    ++ EIQATI     +P    M K +   + 
Sbjct:   209 YSSRASTTSGNVFNFLNALGDVAFAYAGHNVVLEIQATIPSTPEKPSKIAMWKGVVVAYI 268

Query:   252 VGVLPMFAVTFVGYWAXXXXXXXXXXXXXXXPVWMKAAANISAFLQSVIALHVL--FFIF 309
             V  +  F V FV Y+                P+W+ A AN  AF    + +HV+  + I+
Sbjct:   269 VVAICYFPVAFVCYYIFGNSVDDNILMTLEKPIWLIAIAN--AF----VVVHVIGSYQIY 322

Query:   310 HIPTSSLLSLYL 321
              +P   +L  +L
Sbjct:   323 AMPVFDMLETFL 334

GO:0005275 "amine transmembrane transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006865 "amino acid transport" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

TAIR|locus:2013056 AT1G71680 [Arabidopsis thaliana (taxid:3702)]

 Score = 243 (90.6 bits), Expect = 4.6e-20, P = 4.6e-20
 Identities = 81/314 (25%), Positives = 141/314 (44%)

Query:    21 WFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHE-FGG 79
             W+   F   T +  A VLG P   M  LGW  G+V +I++  ++  +   + +LHE   G
Sbjct:    39 WYYSAFHNVTAMVGAGVLGLP-FAMSQLGWGPGLVAIIMSWAITFYSLWQMVQLHEAVPG 97

Query:    80 KRHIRYRDLAGHIYGRR-AYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTM 138
             KR  RY +L    +G +  Y +    Q +     +  Y +  G++LK    L + +   +
Sbjct:    98 KRLDRYPELGQEAFGPKLGYWIVMPQQLLVQIASDIVYNVTGGKSLKKFVELLFPNLEHI 157

Query:   139 KLPYFIAIAGFVCALFAIG-IPNLSALGVWLGVSTVLSTIYIVIAIWLSVRDGLKNPARD 197
             +  Y+I   GF      +   P+ +++ +   ++ ++S +Y +IA   S+  G ++    
Sbjct:   158 RQTYYIL--GFAALQLVLSQSPDFNSIKIVSLLAALMSFLYSMIASVASIAKGTEHRPST 215

Query:   198 YSIPG-TTATKIFESIGACANLVFAF-NTGMLPEIQATIRQ-PVVEN---MMKALYFQFS 251
             Y + G T A+ +F++      + FAF    ++ EIQATI   P V +   M K +   + 
Sbjct:   216 YGVRGDTVASMVFDAFNGIGTIAFAFAGHSVVLEIQATIPSTPEVPSKKPMWKGVVVAYI 275

Query:   252 VGVLPMFAVTFVGYWAXXXXXXXXXXXXXXXPVWMKAAANISAFLQSVIALHVLF--FIF 309
             + ++    V   GYWA               P W+ AAAN   F+  VI  + +F   +F
Sbjct:   276 IVIICYLFVAISGYWAFGAHVEDDVLISLERPAWLIAAANFMVFIH-VIGSYQVFAMIVF 334

Query:   310 HIPTSSLLSLYLFT 323
                 S L+    FT
Sbjct:   335 DTIESYLVKTLKFT 348

GO:0005886 "plasma membrane" evidence=ISM

GO:0006865 "amino acid transport" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

TAIR|locus:2024071 LHT2 "lysine histidine transporter 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 240 (89.5 bits), Expect = 9.4e-20, P = 9.4e-20
 Identities = 84/312 (26%), Positives = 141/312 (45%)

Query:    21 WFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEF-GG 79
             W+   F   T +  A VL  P   M  LGW  GV  ++++ I++L     + ++HE   G
Sbjct:    33 WWYSAFHNVTAMVGAGVLSLP-YAMSNLGWGPGVTIMVMSWIITLYTLWQMVEMHEIVPG 91

Query:    80 KRHIRYRDLAGHIYGRR-AYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTM 138
             KR  RY +L  H +G +    +    Q +    ++  Y++  G +LK    L   D   +
Sbjct:    92 KRLDRYHELGQHAFGEKLGLWIVVPQQLIVEVGVDIVYMVTGGASLKKVHQLVCPDCKEI 151

Query:   139 KLPYFIAIAGFVCALFAIG-IPNLSALGVWLGVSTVLSTIYIVIAIWLSVRDGLKNPARD 197
             +  ++I I  F    F I  +PN +++ +    + V+S  Y  IA   SV  G+ +P  D
Sbjct:   152 RTTFWIMI--FASVHFVISHLPNFNSISIISLAAAVMSLTYSTIAWAASVHKGV-HPDVD 208

Query:   198 YSIPGTTAT-KIFESIGACANLVFAF-NTGMLPEIQATI----RQPVVENMMKALYFQFS 251
             YS   +T   K+F  + A  ++ FA+    ++ EIQATI      P    M + +   + 
Sbjct:   209 YSPRASTDVGKVFNFLNALGDVAFAYAGHNVVLEIQATIPSTPEMPSKVPMWRGVIVAYI 268

Query:   252 VGVLPMFAVTFVGYWAXXXXXXXXXXXXXXXPVWMKAAANISAFLQSVIALHVL--FFIF 309
             V  +  F V F+GY+                P+W+ A AN+  F    + +HV+  + IF
Sbjct:   269 VVAICYFPVAFLGYYIFGNSVDDNILITLEKPIWLIAMANM--F----VVIHVIGSYQIF 322

Query:   310 HIPTSSLLSLYL 321
              +P   +L   L
Sbjct:   323 AMPVFDMLETVL 334

GO:0005886 "plasma membrane" evidence=ISM

GO:0006865 "amino acid transport" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0015172 "acidic amino acid transmembrane transporter activity" evidence=IGI

GO:0015175 "neutral amino acid transmembrane transporter activity" evidence=IGI

TAIR|locus:2154815 LHT1 "lysine histidine transporter 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 238 (88.8 bits), Expect = 1.6e-19, P = 1.6e-19
 Identities = 86/313 (27%), Positives = 139/313 (44%)

Query:    21 WFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEF-GG 79
             W+   F   T +  A VLG P   M  LGW  G+  L+++ +++L     + ++HE   G
Sbjct:    38 WWYSAFHNVTAMVGAGVLGLP-YAMSQLGWGPGIAVLVLSWVITLYTLWQMVEMHEMVPG 96

Query:    80 KRHIRYRDLAGHIYGRR-AYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTM 138
             KR  RY +L  H +G +    +    Q +    +   Y++  G++LK    L   D   +
Sbjct:    97 KRFDRYHELGQHAFGEKLGLYIVVPQQLIVEIGVCIVYMVTGGKSLKKFHELVCDDCKPI 156

Query:   139 KLPYFIAIAGFVCALFAIG-IPNLSAL-GVWLGVSTVLSTIYIVIAIWLSVRDGLKNPAR 196
             KL YFI I  F    F +  +PN +++ GV L  + V+S  Y  IA   S   G++   +
Sbjct:   157 KLTYFIMI--FASVHFVLSHLPNFNSISGVSLAAA-VMSLSYSTIAWASSASKGVQEDVQ 213

Query:   197 DYSIPG-TTATKIFESIGACANLVFAF-NTGMLPEIQATI----RQPVVENMMKALYFQF 250
              Y     TTA  +F       ++ FA+    ++ EIQATI     +P    M + +   +
Sbjct:   214 -YGYKAKTTAGTVFNFFSGLGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVIVAY 272

Query:   251 SVGVLPMFAVTFVGYWAXXXXXXXXXXXXXXXPVWMKAAANISAFLQSVIALHVL--FFI 308
              V  L  F V  VGY+                P W+ A ANI  F    + +HV+  + I
Sbjct:   273 IVVALCYFPVALVGYYIFGNGVEDNILMSLKKPAWLIATANI--F----VVIHVIGSYQI 326

Query:   309 FHIPTSSLLSLYL 321
             + +P   ++   L
Sbjct:   327 YAMPVFDMMETLL 339

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006865 "amino acid transport" evidence=ISS;RCA

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS;IMP

GO:0016020 "membrane" evidence=ISS

GO:0043090 "amino acid import" evidence=RCA;IMP

GO:0080167 "response to karrikin" evidence=IEP

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006820 "anion transport" evidence=RCA

GO:0006862 "nucleotide transport" evidence=RCA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015696 "ammonium transport" evidence=RCA

GO:0015802 "basic amino acid transport" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043269 "regulation of ion transport" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q69LA1	PROT2_ORYSJ	No assigned EC number	0.7377	0.8796	0.6566	yes	no
P92961	PROT1_ARATH	No assigned EC number	0.7762	0.8950	0.6561	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	324
pfam01490	406	pfam01490, Aa_trans, Transmembrane amino acid tran	7e-52

>gnl|CDD|216528 pfam01490, Aa_trans, Transmembrane amino acid transporter protein

 Score =  175 bits (446), Expect = 7e-52
 Identities = 89/295 (30%), Positives = 132/295 (44%), Gaps = 12/295 (4%)

Query: 20  SWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEF-- 77
           S +Q  F L   I  A VL  P      LGWI G++ L+I  ++SL    L+ +  ++  
Sbjct: 4   SAWQAVFNLIKAIIGAGVLSLPYA-FKQLGWIPGLILLVIVGLISLYTLHLLVQCSKYVD 62

Query: 78  --GGKRHIRYRDLAGHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDD 135
              GKR   Y DL   ++G +   L      VNLF +   Y+I AG  L A F   + D 
Sbjct: 63  KVKGKRRKSYGDLGYRLFGPKGKLLILFAILVNLFGVCISYLIFAGDNLPAIFD-SFFDT 121

Query: 136 HTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTVLSTIYIVIAIWLSVRDGLKNPA 195
             + L YFI I G +    +  IPNLSAL +   V+ V S    ++ + LSV +     A
Sbjct: 122 CHISLVYFIIIFGLIFIPLSF-IPNLSALSILSLVAAVSSL--YIVILVLSVAELGVLTA 178

Query: 196 RDYSIPG-TTATKIFESIGACANLVFAFN-TGMLPEIQATIRQPVVE-NMMKALYFQFSV 252
           +     G  T  K+     A   +VFAF    +L  IQ T++ P     M K L     +
Sbjct: 179 QGVGSLGAKTNIKLARLFLAIGIIVFAFEGHAVLLPIQNTMKSPSKFKAMTKVLLTAIII 238

Query: 253 GVLPMFAVTFVGYWAYGNSSSSYLLNNVSGPVWMKAAANISAFLQSVIALHVLFF 307
             +    V  VGY A+GN+    +L N+    W+   AN+   L  +++  +  F
Sbjct: 239 VTVLYILVGLVGYLAFGNNVKGNILLNLPKSDWLIDIANLLLVLHLLLSYPLQAF 293

This transmembrane region is found in many amino acid transporters including UNC-47 and MTR. UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT). UNC-47 is predicted to have 10 transmembrane domains. MTR is a N system amino acid transporter system protein involved in methyltryptophan resistance. Other members of this family include proline transporters and amino acid permeases. Length = 406

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	324
KOG1303	437	consensus Amino acid transporters [Amino acid tran	100.0
PTZ00206	467	amino acid transporter; Provisional	100.0
KOG1304	449	consensus Amino acid transporters [Amino acid tran	100.0
PF01490	409	Aa_trans: Transmembrane amino acid transporter pro	100.0
PLN03074	473	auxin influx permease; Provisional	100.0
KOG1305	411	consensus Amino acid transporter protein [Amino ac	100.0
COG0814	415	SdaC Amino acid permeases [Amino acid transport an	100.0
KOG4303	524	consensus Vesicular inhibitory amino acid transpor	99.97
PRK09664	415	tryptophan permease TnaB; Provisional	99.89
PRK10483	414	tryptophan permease; Provisional	99.88
PF03222	394	Trp_Tyr_perm: Tryptophan/tyrosine permease family;	99.86
PRK15132	403	tyrosine transporter TyrP; Provisional	99.85
TIGR00837	381	araaP aromatic amino acid transport protein. aroma	99.82
PRK13629	443	threonine/serine transporter TdcC; Provisional	99.72
TIGR00814	397	stp serine transporter. The HAAAP family includes	99.64
TIGR00912	359	2A0309 spore germination protein (amino acid perme	99.13
PRK10655	438	potE putrescine transporter; Provisional	99.11
PRK10435	435	cadB lysine/cadaverine antiporter; Provisional	99.07
TIGR00905	473	2A0302 transporter, basic amino acid/polyamine ant	99.01
TIGR00909	429	2A0306 amino acid transporter.	99.0
PRK10644	445	arginine:agmatin antiporter; Provisional	98.97
TIGR01773	452	GABAperm gamma-aminobutyrate permease. GabP is hig	98.97
PRK10249	458	phenylalanine transporter; Provisional	98.97
TIGR03810	468	arg_ornith_anti arginine/ornithine antiporter. Mem	98.92
TIGR00913	478	2A0310 amino acid permease (yeast).	98.9
TIGR00906	557	2A0303 cationic amino acid transport permease.	98.88
PRK11387	471	S-methylmethionine transporter; Provisional	98.88
PRK11021	410	putative transporter; Provisional	98.88
PRK11049	469	D-alanine/D-serine/glycine permease; Provisional	98.86
PRK10580	457	proY putative proline-specific permease; Provision	98.82
TIGR00930	953	2a30 K-Cl cotransporter.	98.81
PRK10238	456	aromatic amino acid transporter; Provisional	98.81
PRK15049	499	L-asparagine permease; Provisional	98.78
PRK10836	489	lysine transporter; Provisional	98.78
PF03845	320	Spore_permease: Spore germination protein; InterPr	98.77
TIGR00911	501	2A0308 L-type amino acid transporter.	98.76
TIGR00908	442	2A0305 ethanolamine permease. The three genes used	98.74
PRK10746	461	putative transport protein YifK; Provisional	98.73
KOG1287	479	consensus Amino acid transporters [Amino acid tran	98.66
COG0531	466	PotE Amino acid transporters [Amino acid transport	98.65
PRK11357	445	frlA putative fructoselysine transporter; Provisio	98.63
PF13520	426	AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G	98.6
PRK10197	446	gamma-aminobutyrate transporter; Provisional	98.56
COG1113	462	AnsP Gamma-aminobutyrate permease and related perm	98.4
TIGR03428	475	ureacarb_perm permease, urea carboxylase system. A	98.2
TIGR00800	442	ncs1 NCS1 nucleoside transporter family. The NCS1	98.05
KOG3832	319	consensus Predicted amino acid transporter [Genera	98.03
PRK15238	496	inner membrane transporter YjeM; Provisional	98.0
PF00324	478	AA_permease: Amino acid permease; InterPro: IPR004	97.85
TIGR00907	482	2A0304 amino acid permease (GABA permease).	97.79
TIGR00910	507	2A0307_GadC glutamate:gamma-aminobutyrate antiport	97.71
KOG1286	554	consensus Amino acid transporters [Amino acid tran	97.67
COG0833	541	LysP Amino acid transporters [Amino acid transport	97.63
PRK11375	484	allantoin permease; Provisional	97.61
COG1457	442	CodB Purine-cytosine permease and related proteins	97.38
TIGR02358	386	thia_cytX probable hydroxymethylpyrimidine transpo	97.35
TIGR03813	474	put_Glu_GABA_T putative glutamate/gamma-aminobutyr	97.34
COG3949	349	Uncharacterized membrane protein [Function unknown	97.21
TIGR02119	471	panF sodium/pantothenate symporter. Pantothenate (	97.2
COG0591	493	PutP Na+/proline symporter [Amino acid transport a	97.13
PF02133	440	Transp_cyt_pur: Permease for cytosine/purines, ura	97.05
PRK11017	404	codB cytosine permease; Provisional	96.92
TIGR00813	407	sss transporter, SSS family. have different number	96.9
PRK09442	483	panF sodium/panthothenate symporter; Provisional	96.83
PRK12488	549	acetate permease; Provisional	96.56
TIGR02711	549	symport_actP cation/acetate symporter ActP. Member	96.35
PRK09395	551	actP acetate permease; Provisional	96.25
PF02554	376	CstA: Carbon starvation protein CstA; InterPro: IP	96.22
TIGR00835	425	agcS amino acid carrier protein. Members of the AG	96.12
PF00474	406	SSF: Sodium:solute symporter family; InterPro: IPR	96.01
COG1953	497	FUI1 Cytosine/uracil/thiamine/allantoin permeases	95.93
TIGR03648	552	Na_symport_lg probable sodium:solute symporter, VC	94.98
PRK15419	502	proline:sodium symporter PutP; Provisional	94.83
TIGR00796	378	livcs branched-chain amino acid uptake carrier. tr	94.12
TIGR00796	378	livcs branched-chain amino acid uptake carrier. tr	93.89
PRK15015	701	carbon starvation protein A; Provisional	93.42
COG4147	529	DhlC Predicted symporter [General function predict	92.82
KOG1289	550	consensus Amino acid transporters [Amino acid tran	92.79
PF01235	416	Na_Ala_symp: Sodium:alanine symporter family; Inte	91.97
TIGR02121	487	Na_Pro_sym sodium/proline symporter. This family c	90.96
PRK10484	523	putative transporter; Provisional	90.19
COG1966	575	CstA Carbon starvation protein, predicted membrane	89.98
PF05525	427	Branch_AA_trans: Branched-chain amino acid transpo	87.49
COG0733	439	Na+-dependent transporters of the SNF family [Gene	86.58
PF01566	358	Nramp: Natural resistance-associated macrophage pr	85.59
COG1115	452	AlsT Na+/alanine symporter [Amino acid transport a	84.35
KOG1288	945	consensus Amino acid transporters [Amino acid tran	84.2

>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]

Probab=100.00  E-value=1.3e-51  Score=393.58  Aligned_cols=300  Identities=33%  Similarity=0.536  Sum_probs=268.0

Q ss_pred             ccccccccceeehhhhhhhccccccccchhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhh----hcCcccccHHH
Q 020588           12 FFHLEMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHE----FGGKRHIRYRD   87 (324)
Q Consensus        12 ~~~~~~~~s~~~~~~~l~~~~iG~GiL~LP~a~~~~~G~i~g~i~li~~~~~~~yt~~lL~~~~~----~~~~~~~sy~~   87 (324)
                      +..++|++||+++++|.++.++|+|+|+|||| +++.||+.|+++++..++++.||..+|.+|.+    ..++|+.+|.|
T Consensus        31 ~~~~~~~~s~~~a~~~~i~~~~G~gvLsLP~A-~~~lGW~~G~~~Ll~~~iit~YT~~LL~~~~~~~~~~~~~r~~~Y~d  109 (437)
T KOG1303|consen   31 PITPSRGGSWWQAAFHIINALIGAGVLSLPYA-LAQLGWISGIVILLLFAIITLYTATLLSRCWEMHEAVPGKRRYRYPD  109 (437)
T ss_pred             ccccCCCCcceehhhheehhhhhhhhhhhHHH-HHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCChHH
Confidence            34457889999999999999999999999999 99999999999999999999999999999977    35667788999


Q ss_pred             HHHHHhCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccCCCCCCchhhHHHHHHHHHHHHhcCCCCcchHHH
Q 020588           88 LAGHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVW  167 (324)
Q Consensus        88 l~~~~~G~~g~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~i~~~~~~l~l~~~~~l~~l~~~  167 (324)
                      +++++||+++++++...+.+.++|.|+.|++..+|+++.+++....++...+.+.|+++++.++ +|++++||+++++++
T Consensus       110 l~~~afG~~~~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~~~~~l~~~~f~iif~~i~-~~~s~lp~~~~l~~~  188 (437)
T KOG1303|consen  110 LGQAAFGPKGRLLVSVLQYLELFGICVVYIILAGDNLKALFPIVSLNDNSLDKQYFIIIFGLIV-LPLSQLPNFHSLSYL  188 (437)
T ss_pred             HHHHHhCCCceEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccceehhhhHHHHH-HHHHHCCCcchhHHH
Confidence            9999999999999999999999999999999999999999988664332455788999999987 799999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhhhccCccCCC--CcCCCCCCcchhhhhHHhhhhHHHHHhc-cCchhhhhccccCchhhhHHH
Q 020588          168 LGVSTVLSTIYIVIAIWLSVRDGLKNPA--RDYSIPGTTATKIFESIGACANLVFAFN-TGMLPEIQATIRQPVVENMMK  244 (324)
Q Consensus       168 S~~~~~~~~~~~~i~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~i~~faf~-h~~~~~i~~~m~~ps~~~~~~  244 (324)
                      |..++++++.++++.++.+..++...+.  .++...+  ...  ..++++|+++|+|+ |+++||||++||+|  ++|+|
T Consensus       189 S~~~avmS~~~a~~~~~~g~~~g~~~~~~~~~~~~~~--~~~--~~f~a~g~iaFaf~gH~v~peIq~tMk~p--~~f~~  262 (437)
T KOG1303|consen  189 SLVGAVMSTLYAVILIVLGIADGVGFCAPSGGYLDLG--TIP--TVFTALGIIAFAYGGHAVLPEIQHTMKSP--PKFKK  262 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHhhccccccCCcccCcccCC--CCc--chhhhhhheeeeecCCeeeeehHhhcCCc--hhhhh
Confidence            9999999999999999988888754322  2222111  111  11899999999998 99999999999999  66999


Q ss_pred             HHHHHHHHHHHHHHHHhhHHhhhcCCCcccccccCcCCchHHHHHHHHHHHHHHHhhhhhhcccccccchhhhhh
Q 020588          245 ALYFQFSVGVLPMFAVTFVGYWAYGNSSSSYLLNNVSGPVWMKAAANISAFLQSVIALHVLFFIFHIPTSSLLSL  319 (324)
Q Consensus       245 ~~~~s~~~~~~~Y~~~g~~gy~~fG~~~~~~il~~~~~~~~~~~~~~i~~~i~li~sypl~~~p~~~~~~~~~~~  319 (324)
                      ++.+++.+++.+|+.+++.||++|||++++|++.|++++.|+.+.+|+++.+|++.+|++++.|.++..|++...
T Consensus       263 ~~lis~~~~~~~y~~vai~GY~aFG~~~~~~il~s~~~p~~~~~~ani~i~~h~i~s~~i~a~pl~~~~E~~~~~  337 (437)
T KOG1303|consen  263 ALLISYIIVTFLYFPVAIIGYWAFGDSVPDNILLSLQPPTWLIALANILIVLHLIGSYQIYAQPLFDVVEKLIGV  337 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhccccchhhhhcccCchhHHHHHHHHHHHHHhhhhhhhhcchHHHHHHHhcc
Confidence            999999999999999999999999999999999999778999999999999999999999999999999998763

>PTZ00206 amino acid transporter; Provisional

Probab=100.00  E-value=2.1e-45  Score=358.24  Aligned_cols=295  Identities=12%  Similarity=0.104  Sum_probs=235.7

Q ss_pred             cceeehhhhhhhccccccccchhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccccHHHHHHHHhCCCcc
Q 020588           19 DSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYGRRAY   98 (324)
Q Consensus        19 ~s~~~~~~~l~~~~iG~GiL~LP~a~~~~~G~i~g~i~li~~~~~~~yt~~lL~~~~~~~~~~~~sy~~l~~~~~G~~g~   98 (324)
                      ++..+++||++|+++|+|+|+||+| ++++||++|++++++++.++.||++++.+++++.+.  .||+|++++++||+++
T Consensus        60 gg~~~s~fnL~~~~iGaGILsLP~A-f~~~G~v~giillil~a~ls~ys~~lL~~~~~~~~~--~sY~~la~~~~G~~g~  136 (467)
T PTZ00206         60 GGIAASAFNIASSTVGAGIVGLPSA-ANSSGLVMAMIYLIIITAMTIFSIYALGVAADKTNI--RTYEGVARVLLGPWGS  136 (467)
T ss_pred             CcHHHHHHHHHHHHHhHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC--CCHHHHHHHHhCHHHH
Confidence            4557899999999999999999999 999999999999999999999999999999876443  5999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccCC---CCCCch-hhHHHHHHHHHHHHhcCCCCcchHHHHHHHHHH
Q 020588           99 ALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDD---HTMKLP-YFIAIAGFVCALFAIGIPNLSALGVWLGVSTVL  174 (324)
Q Consensus        99 ~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~---~~~~~~-~~~~i~~~~~~l~l~~~~~l~~l~~~S~~~~~~  174 (324)
                      +++++.+.+.++|+|++|+++.+|.++.+++....++   .....+ .+.+++.+++ +|++++|++++++++|.++.++
T Consensus       137 ~~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~~~~~~~~~~~r~~~~~i~~~i~-lPLs~~r~i~~L~~~S~i~~~~  215 (467)
T PTZ00206        137 YYVAATRAFHGFSACVAYVISVGDILSATLKGTNAPDFLKQKSGNRLLTSLMWLCFM-LPLVIPRHIDSLRYVSTIAVSF  215 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhccCcEEeeeehhhhHh-hhcccccchHHHHHHHHHHHHH
Confidence            9999999999999999999999999998875321111   011122 2333344443 7999999999999999998765


Q ss_pred             HHHHHHHHhhhhhccCccC--CCCcCCCCCC---cc-hhhhhHHhhhhHHHHHhc-cCchhhhhccccCchhhhHHHHHH
Q 020588          175 STIYIVIAIWLSVRDGLKN--PARDYSIPGT---TA-TKIFESIGACANLVFAFN-TGMLPEIQATIRQPVVENMMKALY  247 (324)
Q Consensus       175 ~~~~~~i~i~~~~~~~~~~--~~~~~~~~~~---~~-~~~~~~~~a~~i~~faf~-h~~~~~i~~~m~~ps~~~~~~~~~  247 (324)
                      .+.....+++.+..++.++  ++.+....+.   +. ....+.+.++|+++|||. |.++|++++|||||+.+|+.++..
T Consensus       216 i~~~vi~ivi~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~algi~~faF~~h~~~~~i~~~M~~~t~~~~~~v~~  295 (467)
T PTZ00206        216 MVYLVIVIVVHSCMNGLPENIKNVSVGKDDNAEIILFNSGNRAIEGLGVFIFAYVFQITAYEVYMDMTNRSVGKFVLAST  295 (467)
T ss_pred             HHHHHhhhhhhhhcccCcccccccccCCCCCCceEEecCchHHHhhhhHHHhhhhhhhhhHHHHHhhcccchhHHHHHHH
Confidence            4443333333333333221  0111100000   01 111357889999999998 999999999999998899999999


Q ss_pred             HHHHHHHHHHHHHhhHHhhhcCCCcccccccCcC-CchHHHHHHHHHHHHHHHhhhhhhcccccccchhhh
Q 020588          248 FQFSVGVLPMFAVTFVGYWAYGNSSSSYLLNNVS-GPVWMKAAANISAFLQSVIALHVLFFIFHIPTSSLL  317 (324)
Q Consensus       248 ~s~~~~~~~Y~~~g~~gy~~fG~~~~~~il~~~~-~~~~~~~~~~i~~~i~li~sypl~~~p~~~~~~~~~  317 (324)
                      .++.++.++|..+|++||++||+++++||+.|++ .++....++++++.+++++|||++++|+|+..++++
T Consensus       296 ~s~~i~~~lY~~~G~~GYl~fG~~v~~~Illn~~p~~~~~~~v~~~~~~~~v~~sypL~~~p~r~~i~~~~  366 (467)
T PTZ00206        296 IAMGMCFTMYVLTAFFGYMDFGRNVTGSVLLMYDPVNEPAIMVGFVGVLVKLFVSYALLGMACRNALYDVI  366 (467)
T ss_pred             HHHHHHHHHHHHHHHhhhhccccccchHHHHhCCCCCCchhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHh
Confidence            9999999999999999999999999999999994 456778889999999999999999999999876664

>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]

Probab=100.00  E-value=4e-42  Score=324.04  Aligned_cols=286  Identities=16%  Similarity=0.181  Sum_probs=239.3

Q ss_pred             cccceeehhhhhhhccccccccchhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhhh----cCcccccHHHHHHHH
Q 020588           17 MLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEF----GGKRHIRYRDLAGHI   92 (324)
Q Consensus        17 ~~~s~~~~~~~l~~~~iG~GiL~LP~a~~~~~G~i~g~i~li~~~~~~~yt~~lL~~~~~~----~~~~~~sy~~l~~~~   92 (324)
                      +..|..++..|+.|.++|+|+|++|+| |+++||+.|.+..++++.+|+||++.+++|.+.    .++...+|++.++.+
T Consensus        45 ~~~s~~~tl~hl~k~~iGtG~l~lP~A-Fk~sG~~~G~~~~~~i~~l~~yc~~~LVk~~~~L~~~~~~~~~~y~~~~~~a  123 (449)
T KOG1304|consen   45 HPTSATQTLIHLLKGSIGTGILSLPLA-FKNSGLVMGLLLTVFIGFLCTYCMHLLVKCSHKLCKRFRGPSLDYAETAESA  123 (449)
T ss_pred             CCCchHHHHHHHHHhhhccccccChHH-HHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCccccHHHHHHHH
Confidence            346899999999999999999999999 999999999999999999999999999999653    222335788877665


Q ss_pred             ----------hCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccCCCCCCchhhHHHHHHHHHHHHhcCCCCc
Q 020588           93 ----------YGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLS  162 (324)
Q Consensus        93 ----------~G~~g~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~i~~~~~~l~l~~~~~l~  162 (324)
                                +||++|.++++++.+.|+|.|++|+++.+++++++.+..  .....+.+.|+.+..... ++++++||+|
T Consensus       124 ~~~~~~~~r~~g~~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~~--~~~~~s~~~~i~~~~~~~-lll~~Ir~Lk  200 (449)
T KOG1304|consen  124 MEGGPGWLRKYGPAARFVVNFFLVITQLGFCCVYLVFVATNLKQIVDEH--SPGVLSVRLYILIQLPPL-LLLNLIRNLK  200 (449)
T ss_pred             HcCCcHHHHhhcHHHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHhcc--CCCCccHHHHHHHHHHHH-HHHHHHHhhH
Confidence                      467889999999999999999999999999999998722  134577888887766665 7999999999


Q ss_pred             chHHHHHHHHHHHHHHHHHHhhhhhccCccCCCCcCCCCCCcchhhhhHHhhhhHHHHHhc-cCchhhhhccccCchhhh
Q 020588          163 ALGVWLGVSTVLSTIYIVIAIWLSVRDGLKNPARDYSIPGTTATKIFESIGACANLVFAFN-TGMLPEIQATIRQPVVEN  241 (324)
Q Consensus       163 ~l~~~S~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~faf~-h~~~~~i~~~m~~ps~~~  241 (324)
                      .|+.+|.++.++.+.-..++....+.+..+  ..+.+    ...++.++...+|+.+|||. +.++.|++++||+|  ++
T Consensus       201 ~Lsp~Sl~Anv~~~~g~~ii~~y~~~~~~~--~~~~~----~~~~~~~~~lf~GtaifafEGig~VLPlEn~Mk~P--~~  272 (449)
T KOG1304|consen  201 ILSPFSLFANVFILVGLAIIMYYLVQDLPP--TSDLP----AVTGWSGLPLFFGTAIFAFEGIGMVLPLENSMKKP--QK  272 (449)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHhccCC--ccccc----cccchhhhHHHHHHHHHHhccceEEEehhhcccCh--hh
Confidence            999999999886654433333222222211  11111    12235567889999999996 99999999999999  88


Q ss_pred             HH---HHHHHHHHHHHHHHHHHhhHHhhhcCCCcccccccCcCCchHHHHHHHHHHHHHHHhhhhhhcccccccchh
Q 020588          242 MM---KALYFQFSVGVLPMFAVTFVGYWAYGNSSSSYLLNNVSGPVWMKAAANISAFLQSVIALHVLFFIFHIPTSS  315 (324)
Q Consensus       242 ~~---~~~~~s~~~~~~~Y~~~g~~gy~~fG~~~~~~il~~~~~~~~~~~~~~i~~~i~li~sypl~~~p~~~~~~~  315 (324)
                      |+   +++..++.+++++|..+|++||++||+++++.|+.|+|+ +|+.+.+++++++++..+||++.+|..+-.|.
T Consensus       273 F~g~~gVLn~~M~~V~~ly~~~Gf~GYl~fG~~v~~sITLNLP~-~~l~~~Vkl~~ai~I~ls~pLQ~yv~~eIi~~  348 (449)
T KOG1304|consen  273 FPGPFGVLNLGMGIVTLLYIFLGFFGYLAFGDDVKGSITLNLPQ-EILSQTVKLLLAIAIFLTYPLQFYVPIEIIEP  348 (449)
T ss_pred             cCCccchHHHHHHHHHHHHHHHHHHHHhhccccccceEEecCCc-cHHHHHHHHHHHHHHHHcCchhhhhhHHHHHH
Confidence            99   999999999999999999999999999999999999996 99999999999999999999999998776665

>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR)

Probab=100.00  E-value=2.5e-44  Score=345.37  Aligned_cols=298  Identities=21%  Similarity=0.307  Sum_probs=248.8

Q ss_pred             cccceeehhhhhhhccccccccchhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhc--CcccccHHHHHHHHhC
Q 020588           17 MLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFG--GKRHIRYRDLAGHIYG   94 (324)
Q Consensus        17 ~~~s~~~~~~~l~~~~iG~GiL~LP~a~~~~~G~i~g~i~li~~~~~~~yt~~lL~~~~~~~--~~~~~sy~~l~~~~~G   94 (324)
                      +|+|++++++|++|+++|+|+|+||++ ++++||+.|++++++++.++.||.+++.|+++..  +++..+|+|++++.+|
T Consensus         1 ~~~s~~~~~~~l~~~~iG~G~L~lP~a-f~~~G~~~g~i~l~~~~~~s~~t~~~l~~~~~~~~~~~~~~~y~~l~~~~~G   79 (409)
T PF01490_consen    1 HKGSWFSAFFNLINSIIGAGILSLPYA-FAQSGWVLGIILLVLVALLSYYTMYLLVRAANAMPNGTGRRSYGDLARRAFG   79 (409)
T ss_pred             CCccHHHHHHHHHHHHHhHHHHHHHHH-HHHhhhhhhhHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccc
Confidence            478999999999999999999999999 9999999999999999999999999999997752  3456799999999999


Q ss_pred             CCcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccCCCCCCchhhHHHHHHHHHHHHhcCCCCcchHHHHHHHHHH
Q 020588           95 RRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTVL  174 (324)
Q Consensus        95 ~~g~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~i~~~~~~l~l~~~~~l~~l~~~S~~~~~~  174 (324)
                      |++++++++++.+.++|.|++|++..+|.+..+.+.+.+ +...++..|.++.++++ +|++++|+++++++.|.++.++
T Consensus        80 ~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~-~~~~~~~~~~~i~~~i~-~pls~~~~l~~l~~~s~~~~~~  157 (409)
T PF01490_consen   80 PKGKWFVDICIFIYLFGSCVAYLIIIGDSLSSLIPSFFG-DLFISRYVWIIIFALIV-LPLSFLKNLKSLRYLSILGLFS  157 (409)
T ss_pred             ccccccccchheeccccccceeEEEeeeeeecccccccc-ccccccccccccccccc-ccccccchhhHHHHHhhhhhhc
Confidence            999999999999999999999999999999998776432 13456667776666655 7999999999999999998775


Q ss_pred             HHHHHHHHhhhhhccCccCCCCcCCCCC-CcchhhhhHHhhhhHHHHHhc-cCchhhhhccccCchh-hhHHHHHHHHHH
Q 020588          175 STIYIVIAIWLSVRDGLKNPARDYSIPG-TTATKIFESIGACANLVFAFN-TGMLPEIQATIRQPVV-ENMMKALYFQFS  251 (324)
Q Consensus       175 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~i~~faf~-h~~~~~i~~~m~~ps~-~~~~~~~~~s~~  251 (324)
                      .+....+.+......... ++.+.+... .+..++.+++.++|+++|||+ |..+|++++|||+|++ +|++++...+..
T Consensus       158 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~~~~~~~~~~~~~~s~~  236 (409)
T PF01490_consen  158 IFYFIVIVVIYIISYGPG-EPSGVPSPPVWPFISFSGFFSAFGIIIFAFSCHPNLPPIQSEMKDPSKFKKMKKVLSISMI  236 (409)
T ss_pred             cceeeeeecceeeeeecc-cccccccccccccchhhHHHHhhhhhhhhhhcccccceeeeeccCCccccccceeeeehhh
Confidence            543212222211111111 111211111 123445678999999999998 9999999999999976 667799999999


Q ss_pred             HHHHHHHHHhhHHhhhcCCCcccccccCcCCchHHHHHHHHHHHHHHHhhhhhhcccccccchhhhh
Q 020588          252 VGVLPMFAVTFVGYWAYGNSSSSYLLNNVSGPVWMKAAANISAFLQSVIALHVLFFIFHIPTSSLLS  318 (324)
Q Consensus       252 ~~~~~Y~~~g~~gy~~fG~~~~~~il~~~~~~~~~~~~~~i~~~i~li~sypl~~~p~~~~~~~~~~  318 (324)
                      +++++|..+|..||++||+++++|++.|++++++...++++++.++++.+||++.+|.++..+..+.
T Consensus       237 ~~~~~y~~~g~~gy~~fg~~~~~~il~n~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~  303 (409)
T PF01490_consen  237 ICFIIYLLFGIFGYLAFGDSVQGNILLNLPNDDVLIIIARILLVISLLLSYPLQLFPARNSLENLLF  303 (409)
T ss_pred             hhhHHhhhhhhcccceeeeeecchhhhcCCCcccccccccccchhhhhhccccccchhHhhhhhhee
Confidence            9999999999999999999999999999997778999999999999999999999999998888764

UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.

>PLN03074 auxin influx permease; Provisional

Probab=100.00  E-value=1.8e-37  Score=301.94  Aligned_cols=283  Identities=14%  Similarity=0.176  Sum_probs=230.1

Q ss_pred             ccceeehhhhhhhccccccccchhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhhh----cCccc-------ccHH
Q 020588           18 LDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEF----GGKRH-------IRYR   86 (324)
Q Consensus        18 ~~s~~~~~~~l~~~~iG~GiL~LP~a~~~~~G~i~g~i~li~~~~~~~yt~~lL~~~~~~----~~~~~-------~sy~   86 (324)
                      ++|..++.+|++++.+|.|+|+||+| ++++||++|++.++++++++.||++++.+|+.+    .+++.       .+|.
T Consensus        45 ~~s~~~~~~~l~~~~vG~GILaLP~A-f~~~G~v~Gii~lv~~~~l~~Yt~~lL~~~~~~~~~r~~~~~~~~~~~~~~~~  123 (473)
T PLN03074         45 GGSVYDAWFSCASNQVAQVLLTLPYS-FSQLGMLSGILFQIFYGLLGSWTAYLISVLYVEYRARKEREKVDFKNHVIQWF  123 (473)
T ss_pred             CchHHHHHHHHHHHHHhHHHHhHHHH-HHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCchhHHHHHHH
Confidence            36777888999999999999999999 999999999999999999999999999987432    11111       2689


Q ss_pred             HHHHHHhCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccCCCCCCchhhHHHHHHHHHHHHhcCCCCcchHH
Q 020588           87 DLAGHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGV  166 (324)
Q Consensus        87 ~l~~~~~G~~g~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~i~~~~~~l~l~~~~~l~~l~~  166 (324)
                      |+++..+||+++.+..+...+.+++.|+.|++..++++..+       +...+.+.|++++++++ +|++++|++|++++
T Consensus       124 e~~~~~~G~~~~~~~~~~~~v~l~~~~v~~li~~~~~~~~l-------~~~~~~~~~~~i~~~v~-~~~~~i~sl~~l~~  195 (473)
T PLN03074        124 EVLDGLLGPYWKNVGLAFNCTFLLFGSVIQLIACASNIYYI-------NDNLDKRTWTYIFGACC-ATTVFIPSFHNYRI  195 (473)
T ss_pred             HHHHHhcChhHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhh-------CCCcCCCeEEeehHHHH-HHHHHccCHHHHHH
Confidence            99999999999999999999999999999999888777654       23467788888888776 68899999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhccCccCCCCcCCCCCCcchhhhhHHhhhhHHHHHhc-cCchhhhhccccCchhhhHHHH
Q 020588          167 WLGVSTVLSTIYIVIAIWLSVRDGLKNPARDYSIPGTTATKIFESIGACANLVFAFN-TGMLPEIQATIRQPVVENMMKA  245 (324)
Q Consensus       167 ~S~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~faf~-h~~~~~i~~~m~~ps~~~~~~~  245 (324)
                      +|.++..+++....++++.+..++.. ++.+.+    .+.++...+.+.++++|+|+ |.++|++++|||||  ++++++
T Consensus       196 ~S~ig~~~tl~~av~i~i~~i~~~~~-~~~~~~----~~~~~~~~f~~~~~i~faf~g~~v~~~I~~~M~~P--~~F~~~  268 (473)
T PLN03074        196 WSFLGLLMTTYTAWYMTIAALSHGQV-EGVKHS----GPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKP--QKFKYI  268 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCC-CCCCCC----CchhHHHHHHHHHHHHHHhcccccHHHHHHhccCh--hcccch
Confidence            99998775554433333333333321 222221    12345567788889999997 99999999999999  789999


Q ss_pred             HHHHHHHHHHHHHHHhhHHhhhcCCCccc--ccccCcCCchHHHHHHHHHHHHHHHhhhhhhcccccccchhhh
Q 020588          246 LYFQFSVGVLPMFAVTFVGYWAYGNSSSS--YLLNNVSGPVWMKAAANISAFLQSVIALHVLFFIFHIPTSSLL  317 (324)
Q Consensus       246 ~~~s~~~~~~~Y~~~g~~gy~~fG~~~~~--~il~~~~~~~~~~~~~~i~~~i~li~sypl~~~p~~~~~~~~~  317 (324)
                      ...+...++..|+.+|+.||+.|||++++  +.++|++++. ..+++++++.+++..+||+++.|..+..|..+
T Consensus       269 ~~l~~~~v~~~y~~~~~~gY~~fG~~~~~~s~~l~~lp~~~-~~~~~~~~~~i~~~~sy~l~~~p~~~~~e~~~  341 (473)
T PLN03074        269 YLAATLYVLTLTLPSAAAVYWAFGDELLTHSNAFSLLPRSG-WRDAAVILMLIHQFITFGFACTPLYFVWEKAI  341 (473)
T ss_pred             HHHHHHHHHHHHHHHHHeeeeeechhhhhchhHHhcCCCch-HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHh
Confidence            88999999999999999999999999764  5688898544 47899999999999999999999988776654

>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]

Probab=100.00  E-value=3.8e-36  Score=285.88  Aligned_cols=299  Identities=17%  Similarity=0.234  Sum_probs=240.6

Q ss_pred             cccccceeehhhhhhhccccccccchhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccccHHHHHHHHhC
Q 020588           15 LEMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYG   94 (324)
Q Consensus        15 ~~~~~s~~~~~~~l~~~~iG~GiL~LP~a~~~~~G~i~g~i~li~~~~~~~yt~~lL~~~~~~~~~~~~sy~~l~~~~~G   94 (324)
                      .+++.|..++++|++|+++|+|++++|+| |++.|.+.|++++.++++++.++.+++.+|.++.+++  +|++++++.+|
T Consensus         2 ~~~~~s~~~~v~nl~~ti~GaGIl~~P~a-fk~~Giv~gi~li~~~a~~s~~sl~~l~~~a~~~~~~--ty~~l~~~~~g   78 (411)
T KOG1305|consen    2 MSGKTSFRSAVFNLVNTIMGAGILAMPYA-FKTAGLLLGILLIVLSAFLSLLSLYLLSKCAKKSGER--TYSSLGDLIFG   78 (411)
T ss_pred             CCCccchhhhHHHHHhhhhccHHHHhHHH-HHHhcHHHHHHHHHHHHHHHHhHHHHHHHhhhhcCCC--CHHHHHHHHcC
Confidence            35677899999999999999999999999 9999999999999999999999999999999877765  99999999999


Q ss_pred             CCcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcc-CCCC--CCch-h-hHHHHHHHHHHHHhcCCCCcchHHHHH
Q 020588           95 RRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWK-DDHT--MKLP-Y-FIAIAGFVCALFAIGIPNLSALGVWLG  169 (324)
Q Consensus        95 ~~g~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~-~~~~--~~~~-~-~~~i~~~~~~l~l~~~~~l~~l~~~S~  169 (324)
                      +.++...++......+| |++|+++.+|.+..+.+.... ++..  +.++ . |.+....+ +.|++..|+++++++.|.
T Consensus        79 ~~g~~~~~v~~~~~~~g-~i~yliiigd~~p~~~~~~~~~~~~~~~~~~~~~~ill~~~~~-i~pLsl~k~l~~Lk~tS~  156 (411)
T KOG1305|consen   79 KLGKVDAAVAVKCFGVG-MVSYLIIIGDLLPGFIRSLFLDEEGGSHYLDRNFLILLVLLFI-ILPLSLLKNLDSLKYTSA  156 (411)
T ss_pred             CCceeeehhhHHhhhcc-ceEEEEEEccccchhhhhcccccccccccccceeEeehHHHHH-HHHHHHHHhhhhHHHHHH
Confidence            99988888888888888 899999999999977766332 2211  2233 2 33433333 379999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhhhccCccCCCCcCCCCCCcchhhhhHHhhhhHHHHHhc-cCchhhhhccccCchhhhHHHHHHH
Q 020588          170 VSTVLSTIYIVIAIWLSVRDGLKNPARDYSIPGTTATKIFESIGACANLVFAFN-TGMLPEIQATIRQPVVENMMKALYF  248 (324)
Q Consensus       170 ~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~faf~-h~~~~~i~~~m~~ps~~~~~~~~~~  248 (324)
                      ++......++.+++...+......+...+..+  +...+++.+.++|+++|||. |....++++|||||+++++.++...
T Consensus       157 ~s~~~~~~fv~~vv~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~pi~~faf~Ch~n~~~i~~El~~~s~~~i~~v~~~  234 (411)
T KOG1305|consen  157 LSLASVVYFVVLVVYKYFQGPCALGRLSYLVP--NLSSFSSLFYALPIFVFAFTCHSNVFPIYNELKDRSVKKIQRVSNI  234 (411)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccccCCcccccC--CcchhhhhhhhhhhhheeeeccccceeeeeeeeCchHHHHHHHHHH
Confidence            98776665555554443332211111111111  11122578999999999997 8667779999999999999999999


Q ss_pred             HHHHHHHHHHHHhhHHhhhcCCCcccccccCcCCchH------HHHHHHHHHHHHHHhhhhhhcccccccchhhhhhc
Q 020588          249 QFSVGVLPMFAVTFVGYWAYGNSSSSYLLNNVSGPVW------MKAAANISAFLQSVIALHVLFFIFHIPTSSLLSLY  320 (324)
Q Consensus       249 s~~~~~~~Y~~~g~~gy~~fG~~~~~~il~~~~~~~~------~~~~~~i~~~i~li~sypl~~~p~~~~~~~~~~~~  320 (324)
                      +...+..+|..+|.+||++||+++++|++.++++.+.      ..+.+|..+.++.+.++|+..+|+|...++++-=+
T Consensus       235 ~~~~~~~iy~~~g~~GYL~Fg~~v~~n~l~~~~~~~~~~l~~~~~~~vr~~~~~~~~l~~pi~~fPlr~~l~~~~~~~  312 (411)
T KOG1305|consen  235 AIILATLIYLLTGLFGYLTFGDLVKGNLLHNYDSILNNLLRSFPLLCVRLRIAVAVLLTFPIVLFPLRMNLDELLFPY  312 (411)
T ss_pred             HHHHHHHHHHHHHHhhhheecccchHHHHhcCCcccchhHhhhhHHHHHHHHHHHHHHHHHHHhchHHHHHHHHhccc
Confidence            9999999999999999999999999999999974322      35899999999999999999999999877766433

>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]

Probab=100.00  E-value=3.1e-31  Score=254.62  Aligned_cols=302  Identities=17%  Similarity=0.176  Sum_probs=236.9

Q ss_pred             cccccccceeehhhhhhhccccccccchhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccccHHHHHHHH
Q 020588           13 FHLEMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHI   92 (324)
Q Consensus        13 ~~~~~~~s~~~~~~~l~~~~iG~GiL~LP~a~~~~~G~i~g~i~li~~~~~~~yt~~lL~~~~~~~~~~~~sy~~l~~~~   92 (324)
                      .+.+++.+..+++++++++++|+|+|++|++ ++..|++++++++++.+..+.++.+++.|+.++.++++.++.+++++.
T Consensus         3 ~~~~~~~s~~~~vl~l~gT~IGAGvL~lP~a-~~~~G~~~~l~~l~i~~~~t~~s~~~l~~~~~~~~~~~~~~~~~~~~~   81 (415)
T COG0814           3 SSMKKTSSDLGGVLILAGTAIGAGVLFLPVA-FGGGGFWPGLLLLIIAWPLTYLSLLLLLEALLSSPNGKASITSLVEDY   81 (415)
T ss_pred             ccccCCcchHHHHHHHHccccccchhhhhHH-hcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHH
Confidence            3456677889999999999999999999999 999999999999999999999999999999887665435899999999


Q ss_pred             hCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccCCCCCCchhhHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 020588           93 YGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVST  172 (324)
Q Consensus        93 ~G~~g~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~i~~~~~~l~l~~~~~l~~l~~~S~~~~  172 (324)
                      +||+++++.+++..+.++|.+.+|.+..+|.++..++.+...+ +.++..+.+++..+. .++++.++...++..|.+..
T Consensus        82 ~G~~~~~li~~s~~~~~~~~~~aY~~~~g~~l~~~~~~~~~~~-~~~r~~~~lif~~~~-~~l~~~~~~~~lk~ts~l~~  159 (415)
T COG0814          82 LGKKGGILIGLSYFFALYGLLVAYIVGIGNLLASFLGNQFGLN-PLPRKLGSLIFALVL-AFLSWLGTLAVLKITSLLVF  159 (415)
T ss_pred             hCcchHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHhhcccC-CcchHHHHHHHHHHH-HHHHHhchhHHHHHHHHHHH
Confidence            9999999999999999999999999999999999988743211 145555566666655 57888899999999998865


Q ss_pred             HHHHHHHHHHhhhhhccCccCCCCcCCCCCCcchhhhhHHhhhhHHHHHhc-cCchhhhhccccCchhhhHHHHHHHHHH
Q 020588          173 VLSTIYIVIAIWLSVRDGLKNPARDYSIPGTTATKIFESIGACANLVFAFN-TGMLPEIQATIRQPVVENMMKALYFQFS  251 (324)
Q Consensus       173 ~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~faf~-h~~~~~i~~~m~~ps~~~~~~~~~~s~~  251 (324)
                      .....+++..... ..++  +++.....+......+..+..++|+++|||+ |+++|++++|||++++++.+|+..++..
T Consensus       160 ~~v~~~~~l~~~~-~~~~--~~~~l~~~~~~~~~~~~~~~~~ipv~vfsF~~h~~i~si~~~~~~~~~~~~~k~~~~~~~  236 (415)
T COG0814         160 GKVIYLVLLVVYL-IPHW--NPANLFALPSASQSFWKYLLLAIPVFVFSFGFHGNIPSLVNYMRKNSKKAVRKAILIGSL  236 (415)
T ss_pred             HHHHHHHHHHHHH-hccc--CHHHHhcccccchhhHHHHHHHhhHHHhhhhCCccchHHHHHhccchhHHHHHHHHHHHH
Confidence            5444333222221 1111  1111101000002345568889999999999 9999999999999987779999999999


Q ss_pred             HHHHHHHHHhhHHhhhcCCCcccccccCcCCchHHHHHHHHHHHHHHHhhhhhhcccccccchhhhhhcc
Q 020588          252 VGVLPMFAVTFVGYWAYGNSSSSYLLNNVSGPVWMKAAANISAFLQSVIALHVLFFIFHIPTSSLLSLYL  321 (324)
Q Consensus       252 ~~~~~Y~~~g~~gy~~fG~~~~~~il~~~~~~~~~~~~~~i~~~i~li~sypl~~~p~~~~~~~~~~~~~  321 (324)
                      +..++|..++..+|..+|+++.++++++.++++...+ ++.....+...++|...+|++.-..++++-|+
T Consensus       237 ~~~vlyi~~~~~~~~~~~~~~~~~il~~~~~~~~~l~-~~~~~~~~~~~~~~~~~f~~~Ai~tSFlgv~l  305 (415)
T COG0814         237 IALVLYILVGFFVFGCFGSLVFGNILAAKEQNISLLS-ALAGVINSPILSIALNIFALFAIATSFLGVYL  305 (415)
T ss_pred             HHHHHHHHHHHHHHHhcCcccHHHHHHccCchHHHHH-HHHHhhcchHHHHHHHHHHHHHHHHHHhCchh
Confidence            9999999999999999999999999999985444333 34444455557788888887777777766654

>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms]

Probab=99.97  E-value=3.6e-32  Score=244.17  Aligned_cols=277  Identities=15%  Similarity=0.209  Sum_probs=229.0

Q ss_pred             CccccccccceeehhhhhhhccccccccchhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcC------ccccc
Q 020588           11 YFFHLEMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGG------KRHIR   84 (324)
Q Consensus        11 ~~~~~~~~~s~~~~~~~l~~~~iG~GiL~LP~a~~~~~G~i~g~i~li~~~~~~~yt~~lL~~~~~~~~------~~~~s   84 (324)
                      +.++..+|.+.+|++.|+.|++-|.=+++||+| ....|| +++..++.++.+|.||+.+|++|..+.+      +.+.|
T Consensus       109 G~Ge~~~kI~a~qAaWNVTNAIQGMFivgLP~A-vlhGGy-w~i~amvg~A~vCcyTGk~Li~CLYE~~~dGevVrvRds  186 (524)
T KOG4303|consen  109 GHGEASEKISALQAAWNVTNAIQGMFIVGLPIA-VLHGGY-WSIGAMVGVAYVCCYTGKLLIECLYENGEDGEVVRVRDS  186 (524)
T ss_pred             CCCCCCCccHHHHHhhhhhhhhheeeEecccee-eeEcch-hHHHHHHhhhhhhhccchhhhhhhccCCCCCcEEEeehh
Confidence            334555688999999999999999999999999 999998 6999999999999999999999966443      12368


Q ss_pred             HHHHHHHHhCCC-cchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccCCCCCCchhhHHHHHHHHHHHHhcCCCCcc
Q 020588           85 YRDLAGHIYGRR-AYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSA  163 (324)
Q Consensus        85 y~~l~~~~~G~~-g~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~i~~~~~~l~l~~~~~l~~  163 (324)
                      |.++|+..++|+ |.+.+.+.+.+.++.+|+.|++..||.+..-+     |+.+.+++-|+++.+..+ +|..++|++|.
T Consensus       187 YvaIA~~C~~P~lGgr~V~~AQliELlmTCIlYvVv~gdLl~~~f-----P~~svd~~sWm~i~~a~L-Lpc~FLk~Lk~  260 (524)
T KOG4303|consen  187 YVAIADFCYKPGLGGRWVLAAQLIELLMTCILYVVVAGDLLQSCF-----PGLSVDKASWMMITSASL-LPCSFLKDLKI  260 (524)
T ss_pred             HHHHHHHhcCCCcchheeeHHHHHHHHHHHHhhhheechhhhccC-----CCCCccccchhhhhhHHH-hhhHHHHHHHH
Confidence            999999999987 45889999999999999999999999998643     455678899999988887 79999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhhhccCcc--CCCCcCCCCCCcchhhhhHHhhhhHHHHHhc-cCchhhhhccccCchhh
Q 020588          164 LGVWLGVSTVLSTIYIVIAIWLSVRDGLK--NPARDYSIPGTTATKIFESIGACANLVFAFN-TGMLPEIQATIRQPVVE  240 (324)
Q Consensus       164 l~~~S~~~~~~~~~~~~i~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~a~~i~~faf~-h~~~~~i~~~m~~ps~~  240 (324)
                      .+.+|.+.++.-++.-.+++..++.....  ...++.++      +..+++..+|+++|+|. |..+|+++.+|++|+  
T Consensus       261 VS~lSf~ct~sH~viN~i~v~YCLs~~~dW~wskv~Fsi------di~~fPisvG~iVFsYTSqIFLP~LEGNM~~ps--  332 (524)
T KOG4303|consen  261 VSRLSFFCTISHLVINLIMVLYCLSFVSDWSWSKVTFSI------DINTFPISVGMIVFSYTSQIFLPNLEGNMKNPS--  332 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccceeEEEEE------EcccCceEEEEEEEeeeceeeccccccccCChh--
Confidence            99999888777777666666655432211  11122221      23356678999999998 999999999999995  


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhHHhhhcCCCcccccccCcCCchHHHHHHHHHHHHHHHhhhhh
Q 020588          241 NMMKALYFQFSVGVLPMFAVTFVGYWAYGNSSSSYLLNNVSGPVWMKAAANISAFLQSVIALHV  304 (324)
Q Consensus       241 ~~~~~~~~s~~~~~~~Y~~~g~~gy~~fG~~~~~~il~~~~~~~~~~~~~~i~~~i~li~sypl  304 (324)
                      +|...+.++=....++-.++|.+||++||+++++.|.+|++ ++.++.++|+++++..+.|||+
T Consensus       333 ~Fn~Ml~WsHIAAaVfK~~Fg~~~fLTf~~~TqevItnnLp-~qsfk~~VN~fLV~KALLSYPL  395 (524)
T KOG4303|consen  333 QFNVMLKWSHIAAAVFKVVFGMLGFLTFGELTQEVITNNLP-NQSFKILVNLFLVVKALLSYPL  395 (524)
T ss_pred             HheeeeehHHHHHHHHHHHHHHheeeeechhhHHHHhcCCC-ccchhhhhhHHHHHHHHHcCCc
Confidence            45555566666678888999999999999999999999999 5668999999999999999998

>PRK09664 tryptophan permease TnaB; Provisional

Probab=99.89  E-value=2.3e-21  Score=184.29  Aligned_cols=296  Identities=11%  Similarity=0.066  Sum_probs=203.8

Q ss_pred             ccccccceeehhhhhhhccccccccchhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccccHHHHHHHHh
Q 020588           14 HLEMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIY   93 (324)
Q Consensus        14 ~~~~~~s~~~~~~~l~~~~iG~GiL~LP~a~~~~~G~i~g~i~li~~~~~~~yt~~lL~~~~~~~~~~~~sy~~l~~~~~   93 (324)
                      +.|||.+..++++.++++++|+|+|+||.+ .++.|+.++++++++++..+.||+.++.|+..+.+ +..++..++|+.+
T Consensus         4 ~~~~~~~~~gg~~iIaGT~IGAGMLaLP~~-~a~~Gf~~s~~ll~~~w~~M~~t~LlllEv~l~~~-~g~~l~tma~~~L   81 (415)
T PRK09664          4 QAEKKHSAFWGVMVIAGTVIGGGMFALPVD-LAGAWFFWGAFILIIAWFSMLHSGLLLLEANLNYP-VGSSFNTITKDLI   81 (415)
T ss_pred             chhhccchhhhhHHhhhccHhHHHHHHHHH-HhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCCHHHHHHHHc
Confidence            445666888899999999999999999999 99999999999999999999999999999977654 3568999999999


Q ss_pred             CCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccCCCCCCchhhHHHHHHHHHHHHhcCCCCcchHHHHHHHH-
Q 020588           94 GRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVST-  172 (324)
Q Consensus        94 G~~g~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~i~~~~~~l~l~~~~~l~~l~~~S~~~~-  172 (324)
                      ||+|+++..++.....++.+++|+.-.|+.+++.++...  +.+++.+.-.++++.+. -...+.. .|..++.+-+=. 
T Consensus        82 G~~g~~i~~~~~~fl~Y~Ll~AYisggG~il~~~l~~~~--~~~i~~~~~~llF~~~~-~~~v~~g-t~~vd~~nr~l~~  157 (415)
T PRK09664         82 GNTWNIISGITVAFVLYILTYAYISANGAIISETISMNL--GYHANPRIVGICTAIFV-ASVLWIS-SLAASRITSLFLG  157 (415)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhhc--cCCCcHHHHHHHHHHHH-HHHHHhc-hhHHHHHHHHHHH
Confidence            999999999999999999999999999999999876421  12333333233343332 1222322 345555544311 


Q ss_pred             HHHHHHHHHHhhhhhccCccCCC-CcCCCCCCcchhhhhHHhhhhHHHHHhc-cCchhhhhccccCchhhhHHHHHHHHH
Q 020588          173 VLSTIYIVIAIWLSVRDGLKNPA-RDYSIPGTTATKIFESIGACANLVFAFN-TGMLPEIQATIRQPVVENMMKALYFQF  250 (324)
Q Consensus       173 ~~~~~~~~i~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~a~~i~~faf~-h~~~~~i~~~m~~ps~~~~~~~~~~s~  250 (324)
                      .+.+.+.  ..........+.+. .+.+........+.....++|++.+||+ |+++|++.+.+++.. ++.+|++.++.
T Consensus       158 ~~ii~f~--~~~~~l~~~i~~~~L~~~~~~~~~~~~~~~i~~alPVl~~SFgfh~iIPsl~~y~~~d~-~~~~kaIl~Gs  234 (415)
T PRK09664        158 LKIISFV--IVFGSFFFQVDYSILRDATSTTAGTSYFPYIFMALPVCLASFGFHGNIPSLIICYGKRK-DKLIKSVVFGS  234 (415)
T ss_pred             HHHHHHH--HHHHHHhhcccHHHHhcCccccccchHHHHHHHHHHHHHHhhhCCCcchHHHHHhCccH-HHHHHHHHHHH
Confidence            1111111  11111111111000 0000000000012236778999999999 999999999987543 67889999999


Q ss_pred             HHHHHHHHHH--hhHHh---------hhcCCCccccc---ccCcCCchHHHHHHHHHHHHHHHhhhhhhcccccccchhh
Q 020588          251 SVGVLPMFAV--TFVGY---------WAYGNSSSSYL---LNNVSGPVWMKAAANISAFLQSVIALHVLFFIFHIPTSSL  316 (324)
Q Consensus       251 ~~~~~~Y~~~--g~~gy---------~~fG~~~~~~i---l~~~~~~~~~~~~~~i~~~i~li~sypl~~~p~~~~~~~~  316 (324)
                      .+..++|+..  ++.|-         ..-|+++++-+   ..+. ++.+...+.+++..+++.+||-=.....++-..++
T Consensus       235 ~IpLviY~~W~~~ilG~lp~~~~~~~~~~g~nv~~l~~s~~~~~-~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~D~l~D~  313 (415)
T PRK09664        235 LLALVIYLFWLYCTMGNIPRESFKAIISSGGNVDSLVKSFLGTK-QHGIIEFCLLVFSNLAVASSFFGVTLGLFDYLADL  313 (415)
T ss_pred             HHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCCchHHHHHHHhhc-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999764  33331         22333333311   2232 36788889999999999999998888888888777


Q ss_pred             hhh
Q 020588          317 LSL  319 (324)
Q Consensus       317 ~~~  319 (324)
                      +.+
T Consensus       314 ~~~  316 (415)
T PRK09664        314 FKI  316 (415)
T ss_pred             hCC
Confidence            654

>PRK10483 tryptophan permease; Provisional

Probab=99.88  E-value=4.9e-21  Score=182.13  Aligned_cols=298  Identities=10%  Similarity=0.072  Sum_probs=208.1

Q ss_pred             CccccccccceeehhhhhhhccccccccchhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccccHHHHHH
Q 020588           11 YFFHLEMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAG   90 (324)
Q Consensus        11 ~~~~~~~~~s~~~~~~~l~~~~iG~GiL~LP~a~~~~~G~i~g~i~li~~~~~~~yt~~lL~~~~~~~~~~~~sy~~l~~   90 (324)
                      ....++++++..++++.++++.+|+|+|+||.+ .++.|++++++++++++..+.||+.++.|+..+.+ +..++.+++|
T Consensus         3 ~~~~~~~~~~~~g~~~iIaGT~IGaGMLaLP~~-~a~~GF~~s~~~l~~~W~~M~~taLlllEv~l~~~-~g~~~~tma~   80 (414)
T PRK10483          3 TLTTTQTSPSLLGGVVIIGGTIIGAGMFSLPVV-MSGAWFFWSMAALIFTWFCMLHSGLMILEANLNYR-IGSSFDTITK   80 (414)
T ss_pred             ccccccCCCcHHHHHHHHHHchHhHHHHHHHHH-HHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCCHHHHHH
Confidence            345677889999999999999999999999999 99999999999999999999999999999976543 3468999999


Q ss_pred             HHhCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccCCCCCCchhhHHHHHHHHHHHHhcCCCCcchHHHHHH
Q 020588           91 HIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGV  170 (324)
Q Consensus        91 ~~~G~~g~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~i~~~~~~l~l~~~~~l~~l~~~S~~  170 (324)
                      +.+||+|+++..++.....++.+++|+.-.|+.+++.++..   +.+++.+.-.++++.+. -...+. ..|..++.+.+
T Consensus        81 ~~LG~~g~~i~~~s~lfl~Y~Ll~AYisg~g~il~~~l~~~---~~~i~~~~~~llF~~~~-~~iv~~-gt~~vd~~n~~  155 (414)
T PRK10483         81 DLLGKGWNVVNGISIAFVLYILTYAYISASGSILHHTFAEM---SLNVPARAAGFGFALLV-AFVVWL-STKAVSRMTAI  155 (414)
T ss_pred             HHcChHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHhc---CCCCcHHHHHHHHHHHH-HHHHHh-hhhHHHHHHHH
Confidence            99999999999999999999999999999999999987652   12233333333444333 122232 23555555543


Q ss_pred             HHHHHHHHHHHHhhhhhccCccCCCCcCCCCCCcchhhhhHHhhhhHHHHHhc-cCchhhhhccccCchhhhHHHHHHHH
Q 020588          171 STVLSTIYIVIAIWLSVRDGLKNPARDYSIPGTTATKIFESIGACANLVFAFN-TGMLPEIQATIRQPVVENMMKALYFQ  249 (324)
Q Consensus       171 ~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~faf~-h~~~~~i~~~m~~ps~~~~~~~~~~s  249 (324)
                      -....+ ...+..........+ ++.-.+....+...+.....++|++++||+ |+++|++++.+++.. +|.+|++.++
T Consensus       156 l~~~~i-~~f~~~~~~l~~~i~-~~~L~~~~~~~~~~~~~~~~alPvl~~SFgfh~iIPsl~~y~~~d~-~kir~~I~iG  232 (414)
T PRK10483        156 VLGAKV-ITFFLTFGSLLGHVQ-PATLFNVAESNASYAPYLLMTLPFCLASFGYHGNVPSLMKYYGKDP-KTIVKCLVYG  232 (414)
T ss_pred             HHHHHH-HHHHHHHHHHHhhcC-HHHHhccccccchhHHHHHHHHHHHHhhccCCCcchHHHHHhCcCH-HHHHHHHHHH
Confidence            111111 111111111211111 000000000111223346789999999999 999999999988554 5899999999


Q ss_pred             HHHHHHHHHHH--hhHHhhh---------cCCCcccccccCc---CCchHHHHHHHHHHHHHHHhhhhhhcccccccchh
Q 020588          250 FSVGVLPMFAV--TFVGYWA---------YGNSSSSYLLNNV---SGPVWMKAAANISAFLQSVIALHVLFFIFHIPTSS  315 (324)
Q Consensus       250 ~~~~~~~Y~~~--g~~gy~~---------fG~~~~~~il~~~---~~~~~~~~~~~i~~~i~li~sypl~~~p~~~~~~~  315 (324)
                      ..+..++|+..  ++.|-..         -|++++ ..++.+   .++.++..+..++..+++.+||-=.....++-..+
T Consensus       233 s~Iplv~yl~W~~~~lg~l~~~~~~~~~~~~~ni~-~L~~~l~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~d~l~D  311 (414)
T PRK10483        233 TLMALALYTIWLLATMGNIPRPEFIGIAEKGGNID-VLVQALSGVLNSRSLDLLLVVFSNFAVASSFLGVTLGLFDYLAD  311 (414)
T ss_pred             HHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCChH-HHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999884  3333211         222221 111222   23567778899999999999999888888888887


Q ss_pred             hhhh
Q 020588          316 LLSL  319 (324)
Q Consensus       316 ~~~~  319 (324)
                      ++.+
T Consensus       312 ~~k~  315 (414)
T PRK10483        312 LFGF  315 (414)
T ss_pred             HhCC
Confidence            7654

>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=99.86  E-value=5.3e-20  Score=175.84  Aligned_cols=292  Identities=15%  Similarity=0.108  Sum_probs=202.9

Q ss_pred             cccceeehhhhhhhccccccccchhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccccHHHHHHHHhCCC
Q 020588           17 MLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYGRR   96 (324)
Q Consensus        17 ~~~s~~~~~~~l~~~~iG~GiL~LP~a~~~~~G~i~g~i~li~~~~~~~yt~~lL~~~~~~~~~~~~sy~~l~~~~~G~~   96 (324)
                      |+.+.+++++.+.++.+|+|+|+||.+ .+..|+.++++++++++..+.+|..++.|+..+.++ ..++.+++++.+||+
T Consensus         1 ~~~~~~~~~~li~GTaIGAGmLaLP~~-~~~~Gf~~~~~~l~~~w~~~~~s~l~~~E~~~~~~~-~~~~~~~a~~~lG~~   78 (394)
T PF03222_consen    1 KNNSILGGVLLIAGTAIGAGMLALPIA-TAGAGFLPSLILLLIAWPLMYYSGLLLAEVSLNTPE-GSSLTSMAEKYLGKK   78 (394)
T ss_pred             CCchHHHHHHHHHHccHhHHHHHHHHH-HHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCCHHHHHHHHhChH
Confidence            456778889999999999999999999 999999999999999999999999999998765443 468999999999999


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccCCCCCCchhhHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHH
Q 020588           97 AYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTVLST  176 (324)
Q Consensus        97 g~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~i~~~~~~l~l~~~~~l~~l~~~S~~~~~~~~  176 (324)
                      |+++..+...+..++.+++|....++.+++.++....  .+.+.+.-..++.++. ....... -|...+.+..-....+
T Consensus        79 g~~~~~~~~~~~~y~ll~AYisg~g~~~~~~l~~~~~--~~~~~~~~~~~f~~i~-~~iv~~g-~~~v~~~n~~lv~~~i  154 (394)
T PF03222_consen   79 GGIVIGISYLFLLYALLVAYISGGGSILSSLLGNQLG--TDLSPWLSSLLFTIIF-GGIVYFG-TKAVDRINRVLVFGMI  154 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhcC--CCCcHHHHHHHHHHHH-HHHHHhh-HHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999998776431  2333333223333222 1111221 2334444332111111


Q ss_pred             HHHHHHhhhh-hccCccCCCCcCCCCCCcchhhhhHHhhhhHHHHHhc-cCchhhhhccccCchhhhHHHHHHHHHHHHH
Q 020588          177 IYIVIAIWLS-VRDGLKNPARDYSIPGTTATKIFESIGACANLVFAFN-TGMLPEIQATIRQPVVENMMKALYFQFSVGV  254 (324)
Q Consensus       177 ~~~~i~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~faf~-h~~~~~i~~~m~~ps~~~~~~~~~~s~~~~~  254 (324)
                       ..++.+... +.+...+ ....  ......++...+.++|+..+||+ |+++|++.+.+++.. ||.+|++.++..+..
T Consensus       155 -~~~~~l~~~~~p~~~~~-~L~~--~~~~~~~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~~d~-~k~~~ai~~Gs~i~l  229 (394)
T PF03222_consen  155 -ISFIILVVYLIPHWNPS-NLLD--APPSPSDWSYILPALPVLVFSFGFHNIVPSLVKYLGGDP-KKIRKAIIIGSLIPL  229 (394)
T ss_pred             -HHHHHHHHHHhhhcCHH-Hhhc--cccccccHHHHHHHHHHHHHHHHHHhhhHHHHHHhCccH-HHHHHHHHHHHHHHH
Confidence             111111111 2221110 0000  00112345567889999999999 999999999998553 788999999999999


Q ss_pred             HHHHHH--hhHHh---------hhcCCCccc--ccccCcCCchHHHHHHHHHHHHHHHhhhhhhcccccccchhhhhh
Q 020588          255 LPMFAV--TFVGY---------WAYGNSSSS--YLLNNVSGPVWMKAAANISAFLQSVIALHVLFFIFHIPTSSLLSL  319 (324)
Q Consensus       255 ~~Y~~~--g~~gy---------~~fG~~~~~--~il~~~~~~~~~~~~~~i~~~i~li~sypl~~~p~~~~~~~~~~~  319 (324)
                      ++|+..  .+.|-         ..-+++..+  ..+.+..++.+...+++++-.+++.+||-=...-.++...+++.+
T Consensus       230 v~yl~w~~~~lg~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~i~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~k~  307 (394)
T PF03222_consen  230 VMYLLWVFSILGSLPREQFAEAIAQGGNVSALVSALANVSGSPWISILGSIFAFFAIATSFLGVYLGLFDFLADLFKL  307 (394)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHhcCCChHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            999875  33331         111111111  233344446778888999999999999988888888877777654

A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.

>PRK15132 tyrosine transporter TyrP; Provisional

Probab=99.85  E-value=8.4e-20  Score=174.16  Aligned_cols=286  Identities=13%  Similarity=0.080  Sum_probs=201.4

Q ss_pred             cceeehhhhhhhccccccccchhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccccHHHHHHHHhCCCcc
Q 020588           19 DSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYGRRAY   98 (324)
Q Consensus        19 ~s~~~~~~~l~~~~iG~GiL~LP~a~~~~~G~i~g~i~li~~~~~~~yt~~lL~~~~~~~~~~~~sy~~l~~~~~G~~g~   98 (324)
                      ++..++.+.+.++.+|+|+|+||.+ ....|++++++++++++..+.||++++.|+..+.+ +..++.+++|+.+||+|+
T Consensus         3 ~~~~g~~~li~GTaIGAGmLaLPi~-~~~~Gf~~~~~~li~~w~~m~~t~l~l~Ev~~~~~-~~~~~~~~a~~~LG~~g~   80 (403)
T PRK15132          3 NRTLGSIFIVAGTTIGAGMLAMPLA-AAGVGFSVTLILLIGLWALMCYTALLLLEVYQHVP-ADTGLGTLAKRYLGRYGQ   80 (403)
T ss_pred             ccHHHHHHHHHhcchhHHHHHHHHH-HHhChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-CCCCHHHHHHHHhChHHH
Confidence            3677889999999999999999999 99999999999999999999999999999865433 346899999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccCCCCCCchhhHHHHHHHHHHHHhcCCCCcchHHHHHHHH-HHHHH
Q 020588           99 ALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVST-VLSTI  177 (324)
Q Consensus        99 ~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~i~~~~~~l~l~~~~~l~~l~~~S~~~~-~~~~~  177 (324)
                      ++..++.....+..+.+|....|+.+++..+.+..  .+++.....+++.++. -...+. ..|...+...+=. .+.+.
T Consensus        81 ~i~~~~y~fl~y~ll~AYisg~g~il~~~l~~~~~--~~i~~~~~~l~F~~~~-~~iv~~-g~~~v~~~n~~L~~~~ii~  156 (403)
T PRK15132         81 WLTGFSMMFLMYALTAAYISGAGELLASSISDWTG--ISMSPTAGVLLFTLVA-GGVVCV-GTSSVDLFNRFLFSAKIIF  156 (403)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHhcc--CCCChHHHHHHHHHHH-HHHHhc-cHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999998876542  2344444444444433 122222 2344444433211 11111


Q ss_pred             HHHHHhhhhhccCccCCCCcCCCCCCcchhhhhHHhhhhHHHHHhc-cCchhhhhccccCchhhhHHHHHHHHHHHHHHH
Q 020588          178 YIVIAIWLSVRDGLKNPARDYSIPGTTATKIFESIGACANLVFAFN-TGMLPEIQATIRQPVVENMMKALYFQFSVGVLP  256 (324)
Q Consensus       178 ~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~faf~-h~~~~~i~~~m~~ps~~~~~~~~~~s~~~~~~~  256 (324)
                      +..... ....+...+ .    +...+.+ ......++|++.+||+ |+++|++.+.+++.. ||.+|++.++..+..++
T Consensus       157 ~~~~~~-~l~p~~~~~-~----L~~~~~~-~~~~~~~iPvl~~SFgfh~iIpsl~~y~~~~~-~~~~k~i~~Gs~i~li~  228 (403)
T PRK15132        157 LVVMLA-LMMPHIHKV-N----LLTLPLQ-QGLALSAIPVIFTSFGFHGSVPSIVSYMGGNI-RKLRWVFIIGSAIPLVA  228 (403)
T ss_pred             HHHHHH-HHHHhcCHH-H----HhcCCcc-ccHHHHHHHHHHHHhhCCcccHHHHHHhCcCH-HHHHHHHHHHHHHHHHH
Confidence            111111 111111110 0    1000111 1126789999999999 999999999987543 78999999999999999


Q ss_pred             HHHHhhHHhhhcCCCc-----cc-----ccccCcC---CchHHHHHHHHHHHHHHHhhhhhhcccccccchhhhh
Q 020588          257 MFAVTFVGYWAYGNSS-----SS-----YLLNNVS---GPVWMKAAANISAFLQSVIALHVLFFIFHIPTSSLLS  318 (324)
Q Consensus       257 Y~~~g~~gy~~fG~~~-----~~-----~il~~~~---~~~~~~~~~~i~~~i~li~sypl~~~p~~~~~~~~~~  318 (324)
                      |+..-......-+.+.     ++     ++++.+.   ++.|...++.++..+++.+||-=.....++-..+.+.
T Consensus       229 yl~W~~~~lg~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~~  303 (403)
T PRK15132        229 YIFWQLATLGSIDSTTFMGLLANHAGLNGLLQALREVVASPHVELAVHLFADLALATSFLGVALGLFDYLADLFQ  303 (403)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHccCchHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            9886444444433321     11     2333332   4678888999999999999999888888887777664

>TIGR00837 araaP aromatic amino acid transport protein

Probab=99.82  E-value=8.3e-19  Score=167.38  Aligned_cols=285  Identities=11%  Similarity=0.037  Sum_probs=198.6

Q ss_pred             hhhhhhhccccccccchhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccccHHHHHHHHhCCCcchhHHH
Q 020588           24 VGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYGRRAYALTWG  103 (324)
Q Consensus        24 ~~~~l~~~~iG~GiL~LP~a~~~~~G~i~g~i~li~~~~~~~yt~~lL~~~~~~~~~~~~sy~~l~~~~~G~~g~~~v~~  103 (324)
                      ++..++++++|+|++++|.+ .++.|+.++++.+++.+.++.++..++.|+..+..+ ..++.+.+++++||++++++..
T Consensus         2 ~~~lv~gt~IGaGIl~lP~~-~a~~g~~~~~~~~i~~~~~~~~~~l~~~el~~~~p~-~~~~~~~~~~~~G~~~g~~~~~   79 (381)
T TIGR00837         2 GALIIAGTTIGAGMLALPTS-TAGAWFIWTLLLLILLWFLMLHSGLLLLEVYLTYPG-GASFNTIAKDLLGKTGNIIAGL   79 (381)
T ss_pred             ceEEeehhhHhHHHHHHHHH-HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCCHHHHHHHHhCHHHHHHHHH
Confidence            45677899999999999999 999999999999999999999999999998665432 3589999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHhccCCCCCCchhhHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHh
Q 020588          104 LQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTVLSTIYIVIAI  183 (324)
Q Consensus       104 ~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~i~~~~~~l~l~~~~~l~~l~~~S~~~~~~~~~~~~i~i  183 (324)
                      ...+..+..+.+|.+..++.+..+++....+  +.+...+.+++..++ .++ ..+..|..++++.+.....+....+.+
T Consensus        80 ~~~~~~~~~~~ay~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~v~-~~l-~~~G~~~~~~v~~i~~~~~l~~l~~~i  155 (381)
T TIGR00837        80 SLLFVLYILTYAYISGGGSILSRLIGEYFGF--PWSARAIVLIFTVLF-GSF-VWLSTSAVDRITRVLIFGKIIAFALVF  155 (381)
T ss_pred             HHHHHHHHHHHHHHHccHHHHHHHHHHhcCC--CccHHHHHHHHHHHH-HHH-HHhchhHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999998887643211  222232333333322 233 334567777777765443333222222


Q ss_pred             hhhhccCccCCCCcCCCCCCcchhhhhHHhhhhHHHHHhc-cCchhhhhccccCchhhhHHHHHHHHHHHHHHHHHHHhh
Q 020588          184 WLSVRDGLKNPARDYSIPGTTATKIFESIGACANLVFAFN-TGMLPEIQATIRQPVVENMMKALYFQFSVGVLPMFAVTF  262 (324)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~faf~-h~~~~~i~~~m~~ps~~~~~~~~~~s~~~~~~~Y~~~g~  262 (324)
                      +....+...+ .. .+. ..+...+.+...+++...++|+ |.++|++.++++|| +||.+|+..++..+++++|+.+..
T Consensus       156 i~~~~~~~~~-~~-~~~-~~~~~~~~~~~~a~~~~~~~fg~~~~i~~~~~~~~~~-~k~i~raii~g~~i~~~lY~l~~~  231 (381)
T TIGR00837       156 SGLLPHVKGD-LL-LDV-ALDTSYWPYILSALPVCLTSFGFHGNVPSLYKYYDGN-VKKVKKSILIGSAIALVLYILWQL  231 (381)
T ss_pred             HHHHhhccHH-HH-hcC-ccccccHHHHHHHHHHHHHHHHcccccHHHHHHhccC-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2222221110 00 000 0001233467788999999999 88899999999866 589999999999999999998766


Q ss_pred             HHhhhcCCCcc----------cc---cccCcCCchHHHHHHHHHHHHHHHhhhhhhcccccccchhhhh
Q 020588          263 VGYWAYGNSSS----------SY---LLNNVSGPVWMKAAANISAFLQSVIALHVLFFIFHIPTSSLLS  318 (324)
Q Consensus       263 ~gy~~fG~~~~----------~~---il~~~~~~~~~~~~~~i~~~i~li~sypl~~~p~~~~~~~~~~  318 (324)
                      ......+.+.-          +.   .+.+.-++.|...+..++..+++++|+.-.....++-..+.+.
T Consensus       232 ~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~al~tS~~g~~l~~~d~l~~~~~  300 (381)
T TIGR00837       232 ATMGNLPRSEFLPIIAKGGNLDGLVNALQGVLKSSAIELALELFSNFALASSFLGVTLGLFDYLADLFK  300 (381)
T ss_pred             HHhCCCCHHHHHHHHHcCCChHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            55544443211          11   1222112556778888999999999999887777665554443

aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.

>PRK13629 threonine/serine transporter TdcC; Provisional

Probab=99.72  E-value=1.1e-15  Score=145.96  Aligned_cols=288  Identities=11%  Similarity=0.041  Sum_probs=189.5

Q ss_pred             hhhhhhccccccccchhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccccHHHHHHHHhCCCcchhHHHH
Q 020588           25 GFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYGRRAYALTWGL  104 (324)
Q Consensus        25 ~~~l~~~~iG~GiL~LP~a~~~~~G~i~g~i~li~~~~~~~yt~~lL~~~~~~~~~~~~sy~~l~~~~~G~~g~~~v~~~  104 (324)
                      ...+.++.+|+|+|+||-. ....|..+.+++++++..++.|+...+.|......++..++.+++++.+||+|+.+..++
T Consensus        25 ~l~l~GTAIGAGmLfLPI~-~g~~Gf~p~lillll~~p~m~~s~l~L~e~~L~~~~~~~~i~~v~~~~lG~~g~~i~~il  103 (443)
T PRK13629         25 TLGLFGTAIGAGVLFFPIR-AGFGGLIPILLMLVLAYPIAFYCHRALARLCLSGSNPSGNITETVEEHFGKTGGVVITFL  103 (443)
T ss_pred             HHHHHHHHHhHHHHHHHHH-HhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCHHHHHHHHcChhHHHHHHHH
Confidence            4789999999999999999 999999999999999999999999999998655434456899999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHhccCCCCCCchhhHHHHHHHHHHHHhcCCCCcchHHHHHHH-HHHHHHHHHHHh
Q 020588          105 QYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVS-TVLSTIYIVIAI  183 (324)
Q Consensus       105 ~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~i~~~~~~l~l~~~~~l~~l~~~S~~~-~~~~~~~~~i~i  183 (324)
                      ..+..+..+.+|.....+.+++.+..+.+ ..+.++....+++..+. ....... -|.+.+++..= ......+....+
T Consensus       104 Yff~ly~ll~aY~~~itn~l~sfl~~ql~-~~~~~r~l~slifv~~l-~~iv~~G-~~~v~kv~~~Lv~~~i~~l~~l~~  180 (443)
T PRK13629        104 YFFAICPLLWIYGVTITNTFMTFWENQLG-FAPLNRGFVALFLLLLM-AFVIWFG-KDLMVKVMSYLVWPFIASLVLISL  180 (443)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcC-cCCccHHHHHHHHHHHH-HHHHHhh-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999998888888776554431 11233333333333322 1222222 24444444321 111111111111


Q ss_pred             hhhhccCccCCCCcCCC---CCCcc-hhhhhHHhhhhHHHHHhc-cCchhhhhcc----cc---Cch--hhhHHHHHHHH
Q 020588          184 WLSVRDGLKNPARDYSI---PGTTA-TKIFESIGACANLVFAFN-TGMLPEIQAT----IR---QPV--VENMMKALYFQ  249 (324)
Q Consensus       184 ~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~a~~i~~faf~-h~~~~~i~~~----m~---~ps--~~~~~~~~~~s  249 (324)
                      .. +.++..+.-.+.+.   +.... ........++|++.|||+ |+.+|++...    .+   +++  .+|.+|+..++
T Consensus       181 ~L-iP~w~~~~L~~~~~~~~~~~~~~~~~~~l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~~~~~~~a~~k~~rii~~g  259 (443)
T PRK13629        181 SL-IPYWNSAVIDQVDLGSLSLTGHDGILVTVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRDFTERKCSQIISRA  259 (443)
T ss_pred             HH-HHHcCHHHHhcCccccccccccccHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhccccccchHHHHHHHHHHHH
Confidence            11 22221100000000   00000 111246778999999999 8999999888    43   223  48899999999


Q ss_pred             HHHHHHHHHHHhhHHhhhcCCCc-------ccccccC----cCC---c-----hHHHHHHHHHHHHHHHhhhhhhccccc
Q 020588          250 FSVGVLPMFAVTFVGYWAYGNSS-------SSYLLNN----VSG---P-----VWMKAAANISAFLQSVIALHVLFFIFH  310 (324)
Q Consensus       250 ~~~~~~~Y~~~g~~gy~~fG~~~-------~~~il~~----~~~---~-----~~~~~~~~i~~~i~li~sypl~~~p~~  310 (324)
                      ..+..++|+..-+..-..-+++.       +.+++..    +++   .     .++..+..++..+++.+||--..+..+
T Consensus       260 s~i~lv~y~fwv~S~~gsLs~~~l~~a~~qn~s~Ls~La~~~~~~~~~~~~~~~~i~~~~~ifa~~AI~TSFlGv~LGl~  339 (443)
T PRK13629        260 SMLMVAVVMFFAFSCLFTLSPQNMAEAKAQNIPVLSYLANHFASMTGTKSTFAITLEYAASIIALVAIFKSFFGHYLGTL  339 (443)
T ss_pred             HHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCcHHHHHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999887666555555432       2232332    332   1     567888888888999999987777777


Q ss_pred             ccchhhh
Q 020588          311 IPTSSLL  317 (324)
Q Consensus       311 ~~~~~~~  317 (324)
                      +-..-+.
T Consensus       340 E~l~gl~  346 (443)
T PRK13629        340 EGLNGLI  346 (443)
T ss_pred             HHHHHHH
Confidence            6665554

>TIGR00814 stp serine transporter

Probab=99.64  E-value=4.2e-14  Score=135.26  Aligned_cols=285  Identities=13%  Similarity=0.046  Sum_probs=190.8

Q ss_pred             hhhhhhccccccccchhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccccHHHHHHHHhCCCcchhHHHH
Q 020588           25 GFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYGRRAYALTWGL  104 (324)
Q Consensus        25 ~~~l~~~~iG~GiL~LP~a~~~~~G~i~g~i~li~~~~~~~yt~~lL~~~~~~~~~~~~sy~~l~~~~~G~~g~~~v~~~  104 (324)
                      .+.+.++.+|+|+|.+|-. ..+.||++.++..++...++.++..++.|........+.++.|++++.|||+++.+..+.
T Consensus         9 ~~~l~gt~IGaGiL~LP~~-ag~~G~i~~li~~l~~~pl~~~~~~ll~~~~l~~~~p~~~i~~~~~~~fGk~~G~ii~~l   87 (397)
T TIGR00814         9 MLGLYGTAIGAGVLFLPIQ-AGLGGLWVLVLMAIIAYPLTYFGHRALARFLLSSKNPCEDITEVVEEHFGKNWGILITLL   87 (397)
T ss_pred             HHHHHHHHHHHHHHHHHHH-HHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHcCHHHHHHHHHH
Confidence            6788999999999999999 999999999999888888888999999997443322245899999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHhccCCCCCCchhhHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhh
Q 020588          105 QYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTVLSTIYIVIAIW  184 (324)
Q Consensus       105 ~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~i~~~~~~l~l~~~~~l~~l~~~S~~~~~~~~~~~~i~i~  184 (324)
                      .....+..+.+|....++.+......+...+.  ..+ +......++++........+.+.+++.+-....+....+...
T Consensus        88 Y~~~~~~i~~aY~~~~~~~~~~fl~~~~~~~~--p~~-~i~~lilv~il~~iv~~G~~~i~r~~~il~~~~ii~l~~l~~  164 (397)
T TIGR00814        88 YFFAIYPILLIYSVAITNDSASFLVNQLGTAP--PLR-GLLSLALILILVAIMSFGEKLLFKIMGPLVFPLVLILVLLSL  164 (397)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--cHH-HHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999887765432221  122 222111111112222234566666655432211111111111


Q ss_pred             hhhccCccCCCCcCCCCCCcchhhhhHHhhhhHHHHHhc-cCchhhhh----ccccCch--hhhHHHHHHHHHHHHHHHH
Q 020588          185 LSVRDGLKNPARDYSIPGTTATKIFESIGACANLVFAFN-TGMLPEIQ----ATIRQPV--VENMMKALYFQFSVGVLPM  257 (324)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~faf~-h~~~~~i~----~~m~~ps--~~~~~~~~~~s~~~~~~~Y  257 (324)
                      ..+.+...+ ... ..+.. ...+.+...+++...+||+ |+.+|++.    ++.++|+  +||.+|+..++..+..++|
T Consensus       165 ~lip~~~~~-~L~-~~p~~-~~~~~~i~~alpv~~~SF~~~~iIssl~~~~~~~~~~~~~~~~k~~k~i~~~~~i~~~~y  241 (397)
T TIGR00814       165 YLIPHWNGA-NLT-TFPSF-NGFLKTLWLTIPVMVFSFNHSPIISSFAISYREEYGDKEFAERKCLRIMKGASLILVATV  241 (397)
T ss_pred             HHHHHcCHH-HHh-cCCcc-cchHHHHHHHHHHHHHHHHccccchHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHH
Confidence            122222110 000 00000 1123567889999999998 89999996    3344233  4788999999999999999


Q ss_pred             HHHhhHHhhhcCCCc-----ccc--ccc----CcCCchHHHHHHHHHHHHHHHhhhhhhcccccccchhhh
Q 020588          258 FAVTFVGYWAYGNSS-----SSY--LLN----NVSGPVWMKAAANISAFLQSVIALHVLFFIFHIPTSSLL  317 (324)
Q Consensus       258 ~~~g~~gy~~fG~~~-----~~~--il~----~~~~~~~~~~~~~i~~~i~li~sypl~~~p~~~~~~~~~  317 (324)
                      +..-.......+.+.     ++|  ++.    ..+ +.+...+..++..+++.+||--...-+++-.+.++
T Consensus       242 ~~~~~s~~~~l~~~~~~~a~~~nis~Ls~l~~~~~-~~~i~~~~~~f~~~Ai~tSFlG~~lg~~e~l~~l~  311 (397)
T TIGR00814       242 MFFVFSCVLSLSPAEAVAAKEQNISILSYLANHFN-AAWISYAGPIVAIVAISKSFFGHYLGAREGLNGIV  311 (397)
T ss_pred             HHHHHHHhccCCHHHHHHHHHcCcHHHHHHHhhcC-CcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            887666666665443     122  232    223 56777888888888999999888887777777665

The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.

>TIGR00912 2A0309 spore germination protein (amino acid permease)

Probab=99.13  E-value=2.3e-09  Score=101.58  Aligned_cols=238  Identities=16%  Similarity=0.179  Sum_probs=142.0

Q ss_pred             cccceeehhhhhhhccccccccchhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccccHHHHHHHHhCCC
Q 020588           17 MLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYGRR   96 (324)
Q Consensus        17 ~~~s~~~~~~~l~~~~iG~GiL~LP~a~~~~~G~i~g~i~li~~~~~~~yt~~lL~~~~~~~~~~~~sy~~l~~~~~G~~   96 (324)
                      +|.|.+|..+.++++++|+|++.+|.. ..+.+--.+.+..++.+.........+.|..++..+  .+.-|..++.+||+
T Consensus         1 ~~is~~q~~~l~~~~~iG~gil~~P~~-~~~~a~~~~wi~~ll~~~~~~~~~~~~~~l~~~~p~--~~~~~~~~~~~Gk~   77 (359)
T TIGR00912         1 DKISSKQLIFLISSTMIGSGLLTLPAL-VSQSAGQDGWISIILGGLIIIFLLCLMIKIMSKFPE--KNFSEILSKYLGKI   77 (359)
T ss_pred             CcCcHHHHHHHHHHHHHHHHHHhhhHH-HHhccCCCeeHHHHHHHHHHHHHHHHHHHHHHHCCC--CCHHHHHHHHhhHH
Confidence            467888999999999999999999997 555333345566677788888888888887654433  26889999999999


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccCCCCCCchhhHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHH
Q 020588           97 AYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTVLST  176 (324)
Q Consensus        97 g~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~i~~~~~~l~l~~~~~l~~l~~~S~~~~~~~~  176 (324)
                      .+++.........+..+..-.-..++.++.    ...++    +..|......+++......+.++..++++.+-....+
T Consensus        78 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~----tp~~~~~l~~l~~~~~~~~~Gi~~i~r~~~i~~~~~i  149 (359)
T TIGR00912        78 LGRLLSILFILYFFLIAAYLIRIFADFIKT----YLLPR----TPIIVIIILIIIVSIYIVRKGIEVLLRTAEILLIIFL  149 (359)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhcCC----CCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence            988888776655554444333333333332    21122    2333322222211122223466777777665433222


Q ss_pred             HH-HHHHhhhhhccCccCCCCcCCCCCCcchhhhhHHhhh-hHHHHHhc-cCchhhhhccccCchhhhHHHHHHHHHHHH
Q 020588          177 IY-IVIAIWLSVRDGLKNPARDYSIPGTTATKIFESIGAC-ANLVFAFN-TGMLPEIQATIRQPVVENMMKALYFQFSVG  253 (324)
Q Consensus       177 ~~-~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~-~i~~faf~-h~~~~~i~~~m~~ps~~~~~~~~~~s~~~~  253 (324)
                      .. ..+.......+.  +.+.-.+..   ..++.+...+. +...++|+ ...+..+..++|||  |+.+|+...+..++
T Consensus       150 ~~~~~il~~~~~~~~--~~~~l~P~~---~~g~~~~~~~~~~~~~~~f~g~~i~~~~~~~~~~~--~~~~k~~~~~~~~~  222 (359)
T TIGR00912       150 ILFILVLILLAPKLG--NIKNLLPVL---ENGLSPILKGAYPVVTFAFGEIEIFFLLFPLLSKK--KKIKKSIIKAIIIG  222 (359)
T ss_pred             HHHHHHHHHHhcccc--cHHHccCcc---ccCcHHHHhhhhHHhhhhhHHHHHHHHHHHHhCCh--hhhHHHHHHHHHHH
Confidence            21 111111111111  000001111   11223334333 36778886 45555666778887  78999999999999


Q ss_pred             HHHHHHHhhHHhhhcCCCc
Q 020588          254 VLPMFAVTFVGYWAYGNSS  272 (324)
Q Consensus       254 ~~~Y~~~g~~gy~~fG~~~  272 (324)
                      ..+|..+.......+|.+.
T Consensus       223 ~~ly~~~~~~~i~~lg~~~  241 (359)
T TIGR00912       223 VLLYILTTFVSISVFGGNV  241 (359)
T ss_pred             HHHHHHHHHHHHheecHHH
Confidence            9999988887777887543

This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.

>PRK10655 potE putrescine transporter; Provisional

Probab=99.11  E-value=8.2e-09  Score=100.41  Aligned_cols=240  Identities=13%  Similarity=-0.011  Sum_probs=134.7

Q ss_pred             cccccceeehhhhhhhccccccccchhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccccHHHHHHHHhC
Q 020588           15 LEMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYG   94 (324)
Q Consensus        15 ~~~~~s~~~~~~~l~~~~iG~GiL~LP~a~~~~~G~i~g~i~li~~~~~~~yt~~lL~~~~~~~~~~~~sy~~l~~~~~G   94 (324)
                      ++|+.+.++.....+++++|+|++.+|.. .++.|- .+++..++.+++.........|......+. -..-.-+++.+|
T Consensus         4 ~~~~l~~~~~~~l~vg~~iGsGif~~p~~-~~~~G~-~~~~~w~i~~~~~~~~a~~~aeL~~~~P~~-GG~y~y~~~~~G   80 (438)
T PRK10655          4 KSNKMGVVQLTILTAVNMMGSGIIMLPTK-LAQVGT-ISILSWLVTAVGSMALAYAFAKCGMFSRKS-GGMGGYAEYAFG   80 (438)
T ss_pred             ccCcccHHHHHHHHHHhhhhhHHHHhHHH-HHHhhH-HHHHHHHHHHHHHHHHHHHHHHHhhhCCCC-CchHHHHHHHcC
Confidence            56788999999999999999999999998 888886 567777777777777777777764321111 123345678999


Q ss_pred             CCcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccCCCCCCchhhHHHHHHHHHHHHhcCCCCcchHHHHHHHHHH
Q 020588           95 RRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTVL  174 (324)
Q Consensus        95 ~~g~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~i~~~~~~l~l~~~~~l~~l~~~S~~~~~~  174 (324)
                      |+..+++.....+.......++.+...+.+..++.     ........+.+...++......-.+..|..+++..+....
T Consensus        81 ~~~gf~~gw~~~~~~~~~~~~~a~~~~~y~~~~~~-----~~~~~~~~~~~~~~~l~~~~~ln~~g~~~~~~i~~i~~~~  155 (438)
T PRK10655         81 KSGNFMANYTYGVSLLIANVAIAISAVGYGTELFG-----ATLSPVQICLATIGVLWLCTVANFGGARITGQISSVTVWG  155 (438)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----cccchHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence            99888888776555554444443333344433321     1111111222222211100111112233333333332221


Q ss_pred             HHHHHHHHhhhhhccCccCCCCcCCCCCCcchhhhhHHhhhhHHHHHhc-cCchhhhhccccCchhhhHHHHHHHHHHHH
Q 020588          175 STIYIVIAIWLSVRDGLKNPARDYSIPGTTATKIFESIGACANLVFAFN-TGMLPEIQATIRQPVVENMMKALYFQFSVG  253 (324)
Q Consensus       175 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~faf~-h~~~~~i~~~m~~ps~~~~~~~~~~s~~~~  253 (324)
                      .+...++.++........+ ..+..........+.++..++....|+|. ......+-+|+|||+ |+.+|++..+..++
T Consensus       156 ~l~~l~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~-r~iPrAi~~~~~~~  233 (438)
T PRK10655        156 VIIPVVGLSIIGWFWFSPS-LYVAAWNPHHLPFFSAVGSSIAMTLWAFLGLESACANSDAVENPE-RNVPIAVLGGTLGA  233 (438)
T ss_pred             HHHHHHHHHHHHHHHhCcc-cccCCcCccCCchHHHHHHHHHHHHHHHhhhhhhhhhHHHhhCcc-ccccHHHHHHHHHH
Confidence            1111111111111111110 11111100001112345667778899996 766777888999996 68999999999999


Q ss_pred             HHHHHHHhhHH
Q 020588          254 VLPMFAVTFVG  264 (324)
Q Consensus       254 ~~~Y~~~g~~g  264 (324)
                      .++|++.....
T Consensus       234 ~~~Y~l~~~~~  244 (438)
T PRK10655        234 AVIYIVSTNVI  244 (438)
T ss_pred             HHHHHHHHHHH
Confidence            99998865443

>PRK10435 cadB lysine/cadaverine antiporter; Provisional

Probab=99.07  E-value=1.6e-08  Score=98.41  Aligned_cols=244  Identities=16%  Similarity=0.060  Sum_probs=134.8

Q ss_pred             ccccccceeehhhhhhhccccccccchhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccccHHHHHHHHh
Q 020588           14 HLEMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIY   93 (324)
Q Consensus        14 ~~~~~~s~~~~~~~l~~~~iG~GiL~LP~a~~~~~G~i~g~i~li~~~~~~~yt~~lL~~~~~~~~~~~~sy~~l~~~~~   93 (324)
                      +++|+.+.++.....+++++|+|++.+|.. .++.|-. .++..++.++.+........|......+.- ..-+-+++ +
T Consensus         2 ~~~~~lg~~~~~~l~vg~~IGsGif~lp~~-~a~~G~~-~i~~wli~~~~~l~~al~~aEL~s~~P~~G-G~y~y~~~-~   77 (435)
T PRK10435          2 SSAKKIGLFACTGVVAGNMMGSGIALLPAN-LASIGSI-AIWGWIISIIGAMSLAYVYARLATKNPQQG-GPIAYAGE-I   77 (435)
T ss_pred             CCCCcCCHHHHHHHHHhhHHHHHHHHHHHH-HHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHhhCCCCC-ChhHHHHH-H
Confidence            578889999999999999999999999999 8888853 555666666666666666777543221111 22223456 7


Q ss_pred             CCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccCCCCCCchhhHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 020588           94 GRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTV  173 (324)
Q Consensus        94 G~~g~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~i~~~~~~l~l~~~~~l~~l~~~S~~~~~  173 (324)
                      ||+..+.+.........-...++.+...+.+...+..+   +.+.  ..+......+.++-..-.+..|..+.+..+..+
T Consensus        78 g~~~gf~~gw~~~~~~~~~~~~~~~~~~~y~~~~~p~~---~~~~--~~~~~~~~i~~~~~~ln~~gvk~~~~i~~i~~~  152 (435)
T PRK10435         78 SPAFGFQTGVLYYHANWIGNLAIGITAVSYLSTFFPVL---NDPI--PAGIACIAIVWVFTFVNMLGGTWVSRLTTIGLV  152 (435)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc---CChH--HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            99888887776554333333344444445554432211   1111  111111111110111112233444444333222


Q ss_pred             HHHHHHHHHhhhhhccCccCCCCcCCCCCCcchhhhhHHhhhhHHHHHhc-cCchhhhhccccCchhhhHHHHHHHHHHH
Q 020588          174 LSTIYIVIAIWLSVRDGLKNPARDYSIPGTTATKIFESIGACANLVFAFN-TGMLPEIQATIRQPVVENMMKALYFQFSV  252 (324)
Q Consensus       174 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~faf~-h~~~~~i~~~m~~ps~~~~~~~~~~s~~~  252 (324)
                      ..+......++....+...+ ....+.....+.+..++..++....|+|. .......-+|+|||+ |+.+|+...+..+
T Consensus       153 ~~li~~~~~~i~g~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~faf~G~E~~~~~a~E~knP~-r~iPrAi~~~~~i  230 (435)
T PRK10435        153 LVLIPVVGTAIVGWHWFDAA-TYAANWNTSDTTDGHAIIKSILLCLWAFVGVESAAVSTGMVKNPK-RTVPLATMLGTGL  230 (435)
T ss_pred             HHHHHHHHHHHHHHHHcCHH-hhcccccCCCCchHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCcc-ccccHHHHHHHHH
Confidence            21111111111111111110 00001101112234567788889999996 666677788999995 6899999999999


Q ss_pred             HHHHHHHHhhHHhhhc
Q 020588          253 GVLPMFAVTFVGYWAY  268 (324)
Q Consensus       253 ~~~~Y~~~g~~gy~~f  268 (324)
                      +.++|+..........
T Consensus       231 v~ilYil~~~~~~~~~  246 (435)
T PRK10435        231 AGIIYIAATQVISGMF  246 (435)
T ss_pred             HHHHHHHHHHHHHhcC
Confidence            9999988766544333

>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family

Probab=99.01  E-value=4e-08  Score=96.63  Aligned_cols=244  Identities=11%  Similarity=0.052  Sum_probs=138.0

Q ss_pred             cccccceeehhhhhhhccccccccchhhhhhhccc-hhHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccccHHHHHHHHh
Q 020588           15 LEMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLG-WIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIY   93 (324)
Q Consensus        15 ~~~~~s~~~~~~~l~~~~iG~GiL~LP~a~~~~~G-~i~g~i~li~~~~~~~yt~~lL~~~~~~~~~~~~sy~~l~~~~~   93 (324)
                      ++|+.|.++..+..+++++|+|++.+|.. ..+.| -...++..++.+...........|......++.-..-+.+++.+
T Consensus         5 ~~~~l~~~~~~~l~ig~vIGsGif~~~~~-~~~~~g~~~~~~~wli~~~~~~~~al~~aEl~s~~P~~sGG~y~y~~~~~   83 (473)
T TIGR00905         5 KSKKLGLFALTALVIGSMIGSGIFSLPQN-LASVAGPGAVIIGWIITGVGMLALAFVFAILATKKPELDGGIYAYAREGF   83 (473)
T ss_pred             cCCCccHHHHHHHHHHHHHhHHHHHhHHH-HHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhhHHhHc
Confidence            36778999999999999999999999998 65544 22234555666666667777777764322110112233568899


Q ss_pred             CCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccCCCCCCchhhHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 020588           94 GRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTV  173 (324)
Q Consensus        94 G~~g~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~i~~~~~~l~l~~~~~l~~l~~~S~~~~~  173 (324)
                      ||+..+++.............++.....+.+..+++.+. ++  .....+......+......-.+..|..+++..+...
T Consensus        84 G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~p~~~-~~--~~~~~~~~~~~~~~~~~~ln~~Gi~~~~~i~~~~~~  160 (473)
T TIGR00905        84 GPYIGFMSGWGYWLSAWIGNVAYAVLLFSALGYFFPLFG-SG--NPVPSILGASVLLWVFTFLVLRGVRQAAFINTITTI  160 (473)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-CC--CcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence            999998888877665555555565555555555543211 11  111112111111110111122345555555554333


Q ss_pred             HHHHHHHHHhhhhh--ccCccCCCCcCCCCCCc--chhhhhHHhhhhHHHHHhc-cCchhhhhccccCchhhhHHHHHHH
Q 020588          174 LSTIYIVIAIWLSV--RDGLKNPARDYSIPGTT--ATKIFESIGACANLVFAFN-TGMLPEIQATIRQPVVENMMKALYF  248 (324)
Q Consensus       174 ~~~~~~~i~i~~~~--~~~~~~~~~~~~~~~~~--~~~~~~~~~a~~i~~faf~-h~~~~~i~~~m~~ps~~~~~~~~~~  248 (324)
                      ..+...++.++..+  .+... ...+......+  ...+..+..++....|+|. .......-+|+||  +|+.+|++..
T Consensus       161 ~~l~~l~~~ii~~~~~~~~~~-~~~~~~~~~~p~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~--~r~iPrai~~  237 (473)
T TIGR00905       161 AKLIPLFLFIIIGWFWFKLDL-FTADFWGHDVPSLGSVFSQVKNTMLVTLWVFIGIEGAVVSSGRAKN--KSDVGKATVL  237 (473)
T ss_pred             HHHHHHHHHHHHHHHHhCchh-cccccCccCCCcccchHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc--cccchHHHHH
Confidence            22222212222121  11111 00010000000  1123456677888999996 6666677788888  4899999999


Q ss_pred             HHHHHHHHHHHHhhHHh
Q 020588          249 QFSVGVLPMFAVTFVGY  265 (324)
Q Consensus       249 s~~~~~~~Y~~~g~~gy  265 (324)
                      +..++.++|++......
T Consensus       238 ~~~i~~~~Yil~~~~~~  254 (473)
T TIGR00905       238 GTLGALVIYILITLLSL  254 (473)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999988765533

This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.

>TIGR00909 2A0306 amino acid transporter

Probab=99.00  E-value=4e-08  Score=95.23  Aligned_cols=240  Identities=12%  Similarity=-0.016  Sum_probs=145.0

Q ss_pred             ccccceeehhhhhhhccccccccchhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccccHHHHHHHHhCC
Q 020588           16 EMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYGR   95 (324)
Q Consensus        16 ~~~~s~~~~~~~l~~~~iG~GiL~LP~a~~~~~G~i~g~i~li~~~~~~~yt~~lL~~~~~~~~~~~~sy~~l~~~~~G~   95 (324)
                      +|+.+.++..+..+++++|+|++.+|..+....|. .+++..++.+++.........|......+. -..-+-.++.+||
T Consensus         2 ~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~-~~~l~~li~~~~~~~~a~~~~el~~~~p~~-Gg~y~~~~~~~G~   79 (429)
T TIGR00909         2 SRELGLFDLTMLGIGAMIGTGIFVVTGIAAGKAGP-AVILSFVLAGLTALFIALVYAELAAMLPVA-GSPYTYAYEAMGE   79 (429)
T ss_pred             CccccHHHHHHHHHhhhhcchHHHhHHHHHHHcCC-HHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-CcceeeHHHHhCc
Confidence            57789999999999999999999999763445554 345556666777777777788865422111 1223446678999


Q ss_pred             CcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcc--CCCCC----Cchh--hH-HHHHHHHHHHHhcCCCCcchHH
Q 020588           96 RAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWK--DDHTM----KLPY--FI-AIAGFVCALFAIGIPNLSALGV  166 (324)
Q Consensus        96 ~g~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~--~~~~~----~~~~--~~-~i~~~~~~l~l~~~~~l~~l~~  166 (324)
                      +..+++.....+.....+..+....++.+..++.....  ++...    +...  +. +.+..++ ..+ ..+..|..++
T Consensus        80 ~~g~~~gw~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l-~~~g~~~~~~  157 (429)
T TIGR00909        80 LTAFIIGWSLWLEYGVAVAAVAVGWGGYLQEFLPGVGLDLPAVLTAKPGNGGVFNLPALLIVLFL-TYI-LYLGAKESGK  157 (429)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhhhcCCcccccccHHHHHHHHHH-HHH-HHhCcHHHHH
Confidence            99988888877777666777777777777766543211  10000    0000  11 1111111 122 2334666666


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhccCccCCCCcCCCCCCcchhhhhHHhhhhHHHHHhc-cCchhhhhccccCchhhhHHHH
Q 020588          167 WLGVSTVLSTIYIVIAIWLSVRDGLKNPARDYSIPGTTATKIFESIGACANLVFAFN-TGMLPEIQATIRQPVVENMMKA  245 (324)
Q Consensus       167 ~S~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~faf~-h~~~~~i~~~m~~ps~~~~~~~  245 (324)
                      ++.+.....+....+.++....+... ++.+.    ..+....++..++....|+|. .......-+|+|||+ |+.+|+
T Consensus       158 ~~~v~~~~~i~~l~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~~~p~-r~ip~a  231 (429)
T TIGR00909       158 VNDILVVLKVAALLLFAALGAIHFAS-NNYTP----FMPMGFGGVGAATALVFFAFIGFEAISTAAEEVKNPE-RDIPKA  231 (429)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHhhCcH-HhcCC----CCCCcHHHHHHHHHHHHHHHhhHHHHHhhHHhccCcc-ccccHH
Confidence            66664443332222222222222111 11110    111233456777888999995 666667888999995 688999


Q ss_pred             HHHHHHHHHHHHHHHhhHHh
Q 020588          246 LYFQFSVGVLPMFAVTFVGY  265 (324)
Q Consensus       246 ~~~s~~~~~~~Y~~~g~~gy  265 (324)
                      ...+..++.++|+.......
T Consensus       232 i~~~~~~~~v~Yil~~~~~~  251 (429)
T TIGR00909       232 IILSLIVVTLLYVLVAAVIL  251 (429)
T ss_pred             HHHHHHHHHHHHHHHHHHHh
Confidence            99999999999988765443

>PRK10644 arginine:agmatin antiporter; Provisional

Probab=98.97  E-value=7.8e-08  Score=93.82  Aligned_cols=241  Identities=13%  Similarity=0.045  Sum_probs=131.4

Q ss_pred             ccccccceeehhhhhhhccccccccchhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccccHHHHHHHHh
Q 020588           14 HLEMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIY   93 (324)
Q Consensus        14 ~~~~~~s~~~~~~~l~~~~iG~GiL~LP~a~~~~~G~i~g~i~li~~~~~~~yt~~lL~~~~~~~~~~~~sy~~l~~~~~   93 (324)
                      +++|+.+.++.....+++++|+|++.+|.. ..+.|. ..++..++.++........+.|......+.--.|.= +++.+
T Consensus         5 ~~~~~lg~~~~~~l~vg~~iGsGif~~~~~-~a~~g~-~~~~~~~i~~~~~l~~al~~aEL~s~~P~aGG~y~~-~~~~~   81 (445)
T PRK10644          5 ADAHKVGLIPVTLMVAGNIMGSGVFLLPAN-LASTGG-IAIYGWLVTIIGALGLSMVYAKMSSLDPSPGGSYAY-ARRCF   81 (445)
T ss_pred             ccCCCcCHHHHHHHHHhhHhhhHHHhhHHH-HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChhHH-HHHHc
Confidence            466788999999999999999999999998 777774 344555555666666666677764321111112322 78889


Q ss_pred             CCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccCCCCCCchhhHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 020588           94 GRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTV  173 (324)
Q Consensus        94 G~~g~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~i~~~~~~l~l~~~~~l~~l~~~S~~~~~  173 (324)
                      ||+..+++.....+.......+......+....+++..     ............++..+-..-....|..+++..+...
T Consensus        82 g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ln~~gvk~~~~i~~i~~~  156 (445)
T PRK10644         82 GPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPIL-----KDPLVLTITCVVVLWIFVLLNIVGPKMITRVQAVATV  156 (445)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----CCcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHH
Confidence            99988887776665443333333333333333332110     0011111111111110111111233455555444322


Q ss_pred             HHHHHHHHHhhhhhccCccCCCCcCCCCCCcchhhhhHHhhhhHHHHHhc-cCchhhhhccccCchhhhHHHHHHHHHHH
Q 020588          174 LSTIYIVIAIWLSVRDGLKNPARDYSIPGTTATKIFESIGACANLVFAFN-TGMLPEIQATIRQPVVENMMKALYFQFSV  252 (324)
Q Consensus       174 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~faf~-h~~~~~i~~~m~~ps~~~~~~~~~~s~~~  252 (324)
                      ..+....+.+...+.....+ .........+...+..+..++....|+|. .......-+|+|||+ |+.+|++..+..+
T Consensus       157 ~~~i~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~-r~iPrai~~s~~i  234 (445)
T PRK10644        157 LALIPIVGIAVFGWFWFRGE-TYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPK-RNVPIATIGGVLI  234 (445)
T ss_pred             HHHHHHHHHHHHHHHHhCch-hccCCccccccchHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCcc-cchhHHHHHHHHH
Confidence            22211111111111111110 00000000111223345567778899996 666677888999996 5899999999999


Q ss_pred             HHHHHHHHhhHH
Q 020588          253 GVLPMFAVTFVG  264 (324)
Q Consensus       253 ~~~~Y~~~g~~g  264 (324)
                      +.++|+++...-
T Consensus       235 ~~v~Y~l~~~~~  246 (445)
T PRK10644        235 AAVCYVLSSTAI  246 (445)
T ss_pred             HHHHHHHHHHHH
Confidence            999998876653

>TIGR01773 GABAperm gamma-aminobutyrate permease

Probab=98.97  E-value=1.7e-07  Score=91.63  Aligned_cols=236  Identities=14%  Similarity=0.090  Sum_probs=139.8

Q ss_pred             cccccceeehhhhhhhccccccccchhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhhh-cCcccccHHHHHHHHh
Q 020588           15 LEMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEF-GGKRHIRYRDLAGHIY   93 (324)
Q Consensus        15 ~~~~~s~~~~~~~l~~~~iG~GiL~LP~a~~~~~G~i~g~i~li~~~~~~~yt~~lL~~~~~~-~~~~~~sy~~l~~~~~   93 (324)
                      .+|+.+.++..+..+++++|+|++.+|-.+.+..|- .+++..++.+++....+..+.|.... +..  -+.-+.+++.+
T Consensus        10 ~~~~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~G~-~~~i~~~i~~v~~~~~a~~~aEl~s~~P~~--Gg~~~~~~~~~   86 (452)
T TIGR01773        10 LPNGLKTRHVTMLSIAGVIGAGLFVGSGSAIASAGP-AALLAYLLAGLLVVFIMRMLGEMAVANPDT--GSFSTYADDAI   86 (452)
T ss_pred             HhCcCcHHHHHHHHHhhhhhchHHHhhHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CCHHHHHHHHh
Confidence            456779999999999999999999999443778885 46677777788888888888886432 221  24556788999


Q ss_pred             CCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccCCCCCCchhhHHHHHHHHH-HHHhcCCCCcchHHHHHHHH
Q 020588           94 GRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCA-LFAIGIPNLSALGVWLGVST  172 (324)
Q Consensus        94 G~~g~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~i~~~~~~-l~l~~~~~l~~l~~~S~~~~  172 (324)
                      ||+..+++.....+.....+.+.....++.++..    . ++  .  ..|.....++.. ..+.. ...|..+++.....
T Consensus        87 g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~----~-~~--~--~~~~~~~~~~~~~~~~n~-~gv~~~~~~~~~~~  156 (452)
T TIGR01773        87 GRWAGFTIGWLYWWFWVLVIPLEAIAAAGILQYW----F-PD--I--PLWLFSLILTIVLTLTNL-YSVKSYGEFEFWFA  156 (452)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----c-Cc--C--cHHHHHHHHHHHHHHHHH-HhcchhhHHHHHHH
Confidence            9999988888877766655555555555555433    1 22  1  233322222211 11212 23344444443322


Q ss_pred             HHHHHHHH--HHhhhh-hccCccC-CCCcC-CC---CCCcchhhhhHHhhhhHHHHHhc-cCchhhhhccccCchhhhHH
Q 020588          173 VLSTIYIV--IAIWLS-VRDGLKN-PARDY-SI---PGTTATKIFESIGACANLVFAFN-TGMLPEIQATIRQPVVENMM  243 (324)
Q Consensus       173 ~~~~~~~~--i~i~~~-~~~~~~~-~~~~~-~~---~~~~~~~~~~~~~a~~i~~faf~-h~~~~~i~~~m~~ps~~~~~  243 (324)
                      +.-+....  +++.+. ....... ..... +.   .+..+..+.++..++....|+|. .......-+|+|||+ |+.+
T Consensus       157 ~~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~~~~af~G~e~~~~~a~E~k~P~-r~iP  235 (452)
T TIGR01773       157 LIKVIAIIAFIILGAVAIFGFAPGSEVSGFSNLTGKGGFFPNGIGAVLLAILVTMFSFMGTEIVTIAAAESSNPI-KSIT  235 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhccHHHHhHHHHhhcChh-hHHH
Confidence            21111111  111111 1111110 00000 00   01112233457788889999996 777777888999996 5899


Q ss_pred             HHHHHHHHHHHHHHHHHhhHH
Q 020588          244 KALYFQFSVGVLPMFAVTFVG  264 (324)
Q Consensus       244 ~~~~~s~~~~~~~Y~~~g~~g  264 (324)
                      |+...+......+|+......
T Consensus       236 rAi~~~~~~~~~~y~l~~~~~  256 (452)
T TIGR01773       236 RATNSVIWRIIVFYLGSIFIV  256 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            999888888888888764443

GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.

>PRK10249 phenylalanine transporter; Provisional

Probab=98.97  E-value=3.1e-07  Score=90.02  Aligned_cols=235  Identities=15%  Similarity=0.028  Sum_probs=135.1

Q ss_pred             cccceeehhhhhhhccccccccchhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccccHHHHHHHHhCCC
Q 020588           17 MLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYGRR   96 (324)
Q Consensus        17 ~~~s~~~~~~~l~~~~iG~GiL~LP~a~~~~~G~i~g~i~li~~~~~~~yt~~lL~~~~~~~~~~~~sy~~l~~~~~G~~   96 (324)
                      |+.+.++..+..+++++|+|+...|-.+.+..|- ..++..++.+++....+.-+.|......+. -+.-+.+++.+||+
T Consensus        21 r~l~~~~~~~i~ig~~IGsGif~~~g~~~~~aGp-~~~l~~li~~~~~~~~~~~~aEl~~~~P~~-Gg~~~y~~~~~g~~   98 (458)
T PRK10249         21 RGLHNRHIQLIALGGAIGTGLFLGIGPAIQMAGP-AVLLGYGVAGIIAFLIMRQLGEMVVEEPVS-GSFAHFAYKYWGPF   98 (458)
T ss_pred             ccCcHhHhhhhhhhcccchhHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-CCHHHHHHHHhChH
Confidence            6678899999999999999999988774667675 466777778888888888888875432111 24556788999999


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccCCCCCCchhhHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHH
Q 020588           97 AYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTVLST  176 (324)
Q Consensus        97 g~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~i~~~~~~l~l~~~~~l~~l~~~S~~~~~~~~  176 (324)
                      ..+++.....+.......+.....+..++..    . ++  .....+..++..+. ..+.. ...|..+++.....+.-+
T Consensus        99 ~gf~~gw~~~~~~~~~~~~~~~a~~~~~~~~----~-~~--~~~~~~~~~~~~l~-~~lN~-~gv~~~~~i~~~~~~ikv  169 (458)
T PRK10249         99 AGFLSGWNYWVMFVLVGMAELTAAGIYMQYW----F-PD--VPTWIWAAAFFIII-NAVNL-VNVRLYGETEFWFALIKV  169 (458)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----C-Cc--CcHHHHHHHHHHHH-HHHHH-hcchhhhhHHHHHHHHHH
Confidence            9888888766655444444443333333322    1 11  12122222211111 12222 233333333322111111


Q ss_pred             H--HHHHHhhhhh-ccCccCCCCcCC--CC--CCcchhhhhHHhhhhHHHHHhc-cCchhhhhccccCchhhhHHHHHHH
Q 020588          177 I--YIVIAIWLSV-RDGLKNPARDYS--IP--GTTATKIFESIGACANLVFAFN-TGMLPEIQATIRQPVVENMMKALYF  248 (324)
Q Consensus       177 ~--~~~i~i~~~~-~~~~~~~~~~~~--~~--~~~~~~~~~~~~a~~i~~faf~-h~~~~~i~~~m~~ps~~~~~~~~~~  248 (324)
                      .  ..++++.+.. ..+...+..+.+  .+  +..+..+.++..++....|+|. .......-+|+|||+ |+.+|+...
T Consensus       170 ~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~a~E~~~P~-k~iPrai~~  248 (458)
T PRK10249        170 LAIIGMIGFGLWLLFSGHGGEKASIDNLWRYGGFFATGWNGLILSLAVIMFSFGGLELIGITAAEARDPE-KSIPKAVNQ  248 (458)
T ss_pred             HHHHHHHHHHHHHHHcCCCCCCCChhhccCCCCCCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCHh-hHHHHHHHH
Confidence            1  1111111111 111110111110  00  1112334556788888999996 777777889999996 689999999


Q ss_pred             HHHHHHHHHHHHhhH
Q 020588          249 QFSVGVLPMFAVTFV  263 (324)
Q Consensus       249 s~~~~~~~Y~~~g~~  263 (324)
                      +.....++|+.....
T Consensus       249 ~~~~~~~~y~~~~~~  263 (458)
T PRK10249        249 VVYRILLFYIGSLVV  263 (458)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            998899999775443

>TIGR03810 arg_ornith_anti arginine/ornithine antiporter

Probab=98.92  E-value=1.5e-07  Score=92.46  Aligned_cols=248  Identities=11%  Similarity=0.033  Sum_probs=132.6

Q ss_pred             cccceeehhhhhhhccccccccchhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccccHHHHHHHHhCCC
Q 020588           17 MLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYGRR   96 (324)
Q Consensus        17 ~~~s~~~~~~~l~~~~iG~GiL~LP~a~~~~~G~i~g~i~li~~~~~~~yt~~lL~~~~~~~~~~~~sy~~l~~~~~G~~   96 (324)
                      |+.+.++.....+++++|+|++.+|..+.+..|....++..++.++..........|......+..-..-+-+++.+||+
T Consensus         1 ~~lgl~~~~~l~vg~~IGsGif~~~~~~~~~ag~~~~l~~w~i~~~~~~~~al~~aeL~s~~P~~gGG~y~y~~~~fG~~   80 (468)
T TIGR03810         1 KKLGLGALTALVVGSMIGSGIFSLPSDMAAGAAAGAVLIGWVITGVGMLALAFSFQNLANKKPELDGGVYSYAKAGFGPF   80 (468)
T ss_pred             CCCCHHHHHHHHHHhHHhhHHHHhHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhhHHhHcCcH
Confidence            56788889999999999999999998745566643344556667777777777777764321111001233488899999


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccCCCCCCchhhHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHH
Q 020588           97 AYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTVLST  176 (324)
Q Consensus        97 g~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~i~~~~~~l~l~~~~~l~~l~~~S~~~~~~~~  176 (324)
                      ..+++.....+...-...++.....+.+...++.+.   .+.+...+......+..+...-.+..|..++++.+..+.-+
T Consensus        81 ~gf~~gw~~w~~~~~~~~~~~~~~~~~~~~~~p~~~---~~~~~~~~~~~~~~~~~~~~ln~~Gv~~~~~i~~i~~~~ki  157 (468)
T TIGR03810        81 MGFISAWGYWLSAWLGNVAYATLLFSTLGYFFPIFG---GGNNPPSIIGASVLLWCVHFLVLRGVEGAAFINTITTIAKL  157 (468)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc---CCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence            988888776655444444554444444433322111   01111112111111110111112344555555544332222


Q ss_pred             HHHHHHhhhhh--ccCcc-CCCCcCCCC-CC-cchhhhhHHhhhhHHHHHhc-cCchhhhhccccCchhhhHHHHHHHHH
Q 020588          177 IYIVIAIWLSV--RDGLK-NPARDYSIP-GT-TATKIFESIGACANLVFAFN-TGMLPEIQATIRQPVVENMMKALYFQF  250 (324)
Q Consensus       177 ~~~~i~i~~~~--~~~~~-~~~~~~~~~-~~-~~~~~~~~~~a~~i~~faf~-h~~~~~i~~~m~~ps~~~~~~~~~~s~  250 (324)
                      ...++.++..+  .+... .++...+.+ +. ....+..+..++....|+|. ......+-+|.||+  |+.+|++..+.
T Consensus       158 ~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~e~k~~--k~ip~ai~~~~  235 (468)
T TIGR03810       158 VPLFVFIVIGIFAFKGDTFTNDFWGNANGGFSLGSVMTQVKNMMLVTVWVFIGIEGASMLSARAEKR--SDVGKATVIGL  235 (468)
T ss_pred             HHHHHHHHHHHHHhcHhhcCccccccccccCccccHHHHHHHHHHHHHHHHHhHhHHhhhHhhccCc--ccchHHHHHHH
Confidence            21111222111  11110 000000000 00 01112345567788899995 54444555677764  89999999999


Q ss_pred             HHHHHHHHHHhhHHhhhcC
Q 020588          251 SVGVLPMFAVTFVGYWAYG  269 (324)
Q Consensus       251 ~~~~~~Y~~~g~~gy~~fG  269 (324)
                      ..+..+|+.+.+..+...+
T Consensus       236 ~~v~~lY~l~~~~~~g~~~  254 (468)
T TIGR03810       236 IGVLAIYVLVSVLSYGIMT  254 (468)
T ss_pred             HHHHHHHHHHHHHHHhCcC
Confidence            9999999988776554443

Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.

>TIGR00913 2A0310 amino acid permease (yeast)

Probab=98.90  E-value=4e-07  Score=89.58  Aligned_cols=237  Identities=11%  Similarity=0.039  Sum_probs=139.7

Q ss_pred             ccccceeehhhhhhhccccccccchhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccccHHHHHHHHhCC
Q 020588           16 EMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYGR   95 (324)
Q Consensus        16 ~~~~s~~~~~~~l~~~~iG~GiL~LP~a~~~~~G~i~g~i~li~~~~~~~yt~~lL~~~~~~~~~~~~sy~~l~~~~~G~   95 (324)
                      +|+.+.++..+..++.++|+|++..|-.+.+..|-...++..++.+.+......-+.|......+..-.|...+++.+||
T Consensus         1 ~r~L~~~~~~~l~vg~~IGsGif~~~~~~~~~~Gp~~~i~~~~i~~~~~~~~a~~~aEl~s~~P~~gG~~~~~~~~~~g~   80 (478)
T TIGR00913         1 KKSLKQRHIQMIALGGTIGTGLLVGSGTALATGGPAGLLIGYAIMGSIIYCVMQSLGEMATFYPVVSGSFATYASRFVDP   80 (478)
T ss_pred             CCCCcHHHHHHHHHhccccchhhhcchhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHcCc
Confidence            36778888899999999999999887664777774333556667777777777778886543221122577788999999


Q ss_pred             CcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccCCCCCCchhhHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHH
Q 020588           96 RAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTVLS  175 (324)
Q Consensus        96 ~g~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~i~~~~~~l~l~~~~~l~~l~~~S~~~~~~~  175 (324)
                      +..+++.....+.....+.+.....+..+...    . +  +.....|..+..+++ ..+ -.+..|..++++......-
T Consensus        81 ~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~----~-~--~~~~~~~~~~~~~~~-~~i-n~~gv~~~~~~~~~~~~~k  151 (478)
T TIGR00913        81 AFGFAVGWNYWLQWLIVLPLELVTASMTIQYW----T-D--KVNPAVWIAIFYVFI-VII-NLFGVKGYGEAEFWFSSIK  151 (478)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----C-C--CCCHHHHHHHHHHHH-HHH-HHhcchHHHHHHHHHHHHH
Confidence            99988888877766655555555555544321    1 1  122233332222211 122 2233455555544322111


Q ss_pred             HHHH--HHHhhhh-hccCccCCC-CcC----CCCCCcc----hhhhhHHhhhhHHHHHhc-cCchhhhhccccCchhhhH
Q 020588          176 TIYI--VIAIWLS-VRDGLKNPA-RDY----SIPGTTA----TKIFESIGACANLVFAFN-TGMLPEIQATIRQPVVENM  242 (324)
Q Consensus       176 ~~~~--~i~i~~~-~~~~~~~~~-~~~----~~~~~~~----~~~~~~~~a~~i~~faf~-h~~~~~i~~~m~~ps~~~~  242 (324)
                      +...  ++++.+. ......+++ ...    +..+.++    ..+.++..++....|+|. .......-+|+|||+ |+.
T Consensus       152 i~~l~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~-r~i  230 (478)
T TIGR00913       152 ILAIIGFIILSIILNCGGGPNHGYIGFRYWHDPGAFAGGTIGGRFKGVCSVFVTAAFSFGGTELVALTAGEAANPR-KSI  230 (478)
T ss_pred             HHHHHHHHHHHHHHHHcCCCCCCCCcccccCCCCCCCCCCccchHHHHHHHHHHHHhhhccHHHHHHHHHhhcChh-hHH
Confidence            1111  1111111 111111100 000    0001111    124556778888899996 777777889999996 689


Q ss_pred             HHHHHHHHHHHHHHHHHHhh
Q 020588          243 MKALYFQFSVGVLPMFAVTF  262 (324)
Q Consensus       243 ~~~~~~s~~~~~~~Y~~~g~  262 (324)
                      +|++..+...+.++|++...
T Consensus       231 Prai~~~~~~~~~~Y~l~~~  250 (478)
T TIGR00913       231 PRAAKRTFWRILVFYILTLF  250 (478)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999988654

>TIGR00906 2A0303 cationic amino acid transport permease

Probab=98.88  E-value=4e-07  Score=91.27  Aligned_cols=244  Identities=9%  Similarity=0.011  Sum_probs=142.4

Q ss_pred             cccccccceeehhhhhhhccccccccchhhhhh-hccchhHHHHHHHHHHHHHHHHHHHHHHHhhh---cCcccccHHHH
Q 020588           13 FHLEMLDSWFQVGFVLTTGINSAYVLGYPGTVM-VPLGWIAGVVGLIIATIVSLNANALIAKLHEF---GGKRHIRYRDL   88 (324)
Q Consensus        13 ~~~~~~~s~~~~~~~l~~~~iG~GiL~LP~a~~-~~~G~i~g~i~li~~~~~~~yt~~lL~~~~~~---~~~~~~sy~~l   88 (324)
                      .+-+|+.+.++....-++.++|+|+..+|-.+. ...|-. .++..++.++.+...+....|....   .|. ..+|   
T Consensus        24 ~~L~r~L~~~~l~~l~ig~viGsGIf~l~g~~a~~~aGp~-~~ls~liagv~~l~~al~yaElas~~P~sGg-~Y~y---   98 (557)
T TIGR00906        24 SKMKRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGPA-IVLSFLISGLAAVLSGFCYAEFGARVPKAGS-AYLY---   98 (557)
T ss_pred             cchhhcCCHHHHHHHHhhhhhcchhhhhhhHHHHhccCcH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCc-ceee---
Confidence            345678899999999999999999999996412 346743 4555666777777777777776432   222 2334   


Q ss_pred             HHHHhCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH----hccC----C-CCCCchhhHHHHHHHHHHHHhcCC
Q 020588           89 AGHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVL----FWKD----D-HTMKLPYFIAIAGFVCALFAIGIP  159 (324)
Q Consensus        89 ~~~~~G~~g~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~----~~~~----~-~~~~~~~~~~i~~~~~~l~l~~~~  159 (324)
                      +++.+|+...+++.....+.....+.+.....++.+..++..    +..+    + ...+.....+....++.+.....+
T Consensus        99 ~~~~~G~~~gfi~GW~~~l~~~~~~a~va~~~s~yl~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~a~~ii~l~~~ln~~  178 (557)
T TIGR00906        99 SYVTVGELWAFITGWNLILEYVIGTAAVARSWSAYFDELLNKQIGQFRRTYFKLNYDGLAEYPDFFAVCLILLLAVLLSF  178 (557)
T ss_pred             HHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccCCcccccchHHHHHHHHHHHHHHHh
Confidence            345789998888888877666554544444455555554432    1000    0 011111111111111101122234


Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHhhhhhccCccCCCCc--C--CCCCCcchhhhhHHhhhhHHHHHhc-cCchhhhhccc
Q 020588          160 NLSALGVWLGVSTVLSTIYIVIAIWLSVRDGLKNPARD--Y--SIPGTTATKIFESIGACANLVFAFN-TGMLPEIQATI  234 (324)
Q Consensus       160 ~l~~l~~~S~~~~~~~~~~~~i~i~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~a~~i~~faf~-h~~~~~i~~~m  234 (324)
                      ..|..++++.+.....+....+.++.+..+...+ +..  .  +..+..+..+.+++.+.....|+|. .......-+|.
T Consensus       179 Gik~s~~v~~i~~~iki~~l~~~iv~g~~~~~~~-~~~~~~~~~~~~f~p~g~~g~l~g~~~~~faf~Gfd~v~~~aeE~  257 (557)
T TIGR00906       179 GVKESAWVNKIFTAINILVLLFVIIAGFTKADVA-NWSITEEKGAGGFMPYGFTGVLSGAATCFFAFIGFDAIATTGEEV  257 (557)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHhhhHHHhhCCch-hccccccccCCCCCCcchHHHHHHHHHHHHHHhhHHHHHHhHHhc
Confidence            5666666666544333332222233333222110 111  0  0001112234467788888999996 77777888999


Q ss_pred             cCchhhhHHHHHHHHHHHHHHHHHHHhhH
Q 020588          235 RQPVVENMMKALYFQFSVGVLPMFAVTFV  263 (324)
Q Consensus       235 ~~ps~~~~~~~~~~s~~~~~~~Y~~~g~~  263 (324)
                      |||+ |+++|++..+..+++++|+++...
T Consensus       258 knP~-r~iP~aii~sl~i~~vlY~lv~~~  285 (557)
T TIGR00906       258 KNPQ-RAIPIGIVTSLLVCFVAYFLMSAA  285 (557)
T ss_pred             cCcc-ccccHHHHHHHHHHHHHHHHHHHH
Confidence            9995 689999999999999999887654

>PRK11387 S-methylmethionine transporter; Provisional

Probab=98.88  E-value=7.2e-07  Score=87.71  Aligned_cols=239  Identities=10%  Similarity=0.033  Sum_probs=131.3

Q ss_pred             cccccceeehhhhhhhccccccccchhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccccHHHHHHHHhC
Q 020588           15 LEMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYG   94 (324)
Q Consensus        15 ~~~~~s~~~~~~~l~~~~iG~GiL~LP~a~~~~~G~i~g~i~li~~~~~~~yt~~lL~~~~~~~~~~~~sy~~l~~~~~G   94 (324)
                      -+|+.+.++.....+++++|+|+...|-.+.+..|-...++..++.+++......-+.|......+. -.+-.-+++.+|
T Consensus        12 l~r~L~~~~~~~l~ig~~IG~Gif~~~g~~~~~~G~~~~~l~~~i~~~~~~~~~~~~aELas~~P~a-GG~y~y~~~~~g   90 (471)
T PRK11387         12 FKRTMKVRHLVMLSLGGVIGTGLFFNTGYIISTTGAAGTLLAYLIGALVVYLVMQCLGELSVAMPET-GAFHVYAARYLG   90 (471)
T ss_pred             hhhcCcHHHHHHHHHHhhhhhHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-CCHHHHHHHhcC
Confidence            4667899999999999999999998887745677743346667777778888888888864421111 134456778899


Q ss_pred             CCcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccCCCCCCchhhHHHHHHHHHHHHhcCCCCcchHHHHHHHHHH
Q 020588           95 RRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTVL  174 (324)
Q Consensus        95 ~~g~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~i~~~~~~l~l~~~~~l~~l~~~S~~~~~~  174 (324)
                      |+..+++.....+.....+..-....+..++.    +. ++  .....+.+++.+++ ..+.. +..|..++.+......
T Consensus        91 ~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~----~~-p~--~~~~~~~~~~~~~~-~~in~-~gvk~~~~~~~~~~~~  161 (471)
T PRK11387         91 PATGYTVAWLYWLTWTVALGSSLTAAGFCMQY----WF-PQ--VPVWPWCLLFCALI-FGLNV-VSTRFFAEGEFWFSLI  161 (471)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cc-Cc--CcHHHHHHHHHHHH-HHHHH-HhHHHHHHHHHHHHHH
Confidence            99888777776655544433333222222221    11 21  11112222221211 12212 2233333333221111


Q ss_pred             HHHHHHHHhhhh---hccC--c--cCC--CCc-CCCCCCcchhhhhHHhhhhHHHHHhc-cCchhhhhccccCchhhhHH
Q 020588          175 STIYIVIAIWLS---VRDG--L--KNP--ARD-YSIPGTTATKIFESIGACANLVFAFN-TGMLPEIQATIRQPVVENMM  243 (324)
Q Consensus       175 ~~~~~~i~i~~~---~~~~--~--~~~--~~~-~~~~~~~~~~~~~~~~a~~i~~faf~-h~~~~~i~~~m~~ps~~~~~  243 (324)
                      -+...++.++..   ....  .  .++  ..+ .+..+..+....++..++....|+|. .......-+|+|||+ |+++
T Consensus       162 ki~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~knP~-r~iP  240 (471)
T PRK11387        162 KVVTILAFIVLGGAAIFGFIPMQDGSPAPGLRNLTAEGWFPHGGLPILMTMVAVNFAFSGTELIGIAAGETENPA-KVIP  240 (471)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCCCCCCCCcccccCCCCCCcccHHHHHHHHHHHHHHHcCHHHHHHHHHHhcChh-hHHH
Confidence            111111111111   1000  0  000  000 01011111222356667777899996 777777888999996 6899


Q ss_pred             HHHHHHHHHHHHHHHHHhhHH
Q 020588          244 KALYFQFSVGVLPMFAVTFVG  264 (324)
Q Consensus       244 ~~~~~s~~~~~~~Y~~~g~~g  264 (324)
                      |++..+.....++|+......
T Consensus       241 rAi~~~~~~~~~~y~~~~~~~  261 (471)
T PRK11387        241 VAIRTTIARLVIFFVGTVLVL  261 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            999999998899998876543

>PRK11021 putative transporter; Provisional

Probab=98.88  E-value=2.5e-07  Score=89.26  Aligned_cols=229  Identities=14%  Similarity=0.116  Sum_probs=130.7

Q ss_pred             ceeehhhhhhhccccccccchhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccccHHHHHHHHhCCCcch
Q 020588           20 SWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYGRRAYA   99 (324)
Q Consensus        20 s~~~~~~~l~~~~iG~GiL~LP~a~~~~~G~i~g~i~li~~~~~~~yt~~lL~~~~~~~~~~~~sy~~l~~~~~G~~g~~   99 (324)
                      +++++....+++++|+|++.+|-.+.+..|- ..++..++.++..........|...+..+. -..-.-+++.+||+..+
T Consensus         2 g~~~~~~l~~g~~IGsGif~~~g~~~~~aG~-~~~~~~~i~~~~~~~~al~~aEl~s~~P~a-GG~y~y~~~~~G~~~gf   79 (410)
T PRK11021          2 GLWQGIGLLSTSLLGTGVFAVPALAALVAGN-NSLWAWPLLILLIFPIAIVFARLGRHFPHA-GGPAHFVGMAFGPRLGR   79 (410)
T ss_pred             cHHHHHHHHHHHHHhhHHHHhHHHHHHhcCc-hHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-CCHHHhHHHHhCchhHH
Confidence            5678888899999999999999885666673 567777777888888888888865432121 13344677899999888


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccCCCCCCchhhHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHH
Q 020588          100 LTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTVLSTIYI  179 (324)
Q Consensus       100 ~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~i~~~~~~l~l~~~~~l~~l~~~S~~~~~~~~~~~  179 (324)
                      +..............+......+.+..+   +. .+ +.  ..+.........+...-.+..|..+++..+..+..   .
T Consensus        80 ~~gw~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~-~~--~~~~~~~~~~~~~~~ln~~Gv~~~~~~~~~~~~~~---~  149 (410)
T PRK11021         80 VTGWLFLSVIPVGLPAALQIAAGFGQAL---FG-WS-SW--QLLLAELLTLALLWLLNLRGASSSANLQTVIALLI---V  149 (410)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHH---cC-CC-Cc--hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH---H
Confidence            8777665433222222222233333322   11 11 11  11221111111111112233444444444322111   1


Q ss_pred             HHHhhhhhccCccCCCCcCCCCCCcchhhhhHHhhhhHHHHHhc-cCchhhhhccccCchhhhHHHHHHHHHHHHHHHHH
Q 020588          180 VIAIWLSVRDGLKNPARDYSIPGTTATKIFESIGACANLVFAFN-TGMLPEIQATIRQPVVENMMKALYFQFSVGVLPMF  258 (324)
Q Consensus       180 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~faf~-h~~~~~i~~~m~~ps~~~~~~~~~~s~~~~~~~Y~  258 (324)
                      .+... ....+..+ ..+.+.++....++.++..++....|+|. .......-+|+|||+ |+++|+...+..++.++|+
T Consensus       150 ~i~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~-k~iPrAi~~~~~~~~~lYi  226 (410)
T PRK11021        150 ALVVA-IWWAGDIK-PADIPFPAPGSIEWSGLFAALGVMFWCFVGIEAFAHLASEFKNPE-RDFPRALMIGLLLAGLVYW  226 (410)
T ss_pred             HHHHH-HHHHcCCc-hhcCCCCCCCCccHHHHHHHHHHHHHHHhcHHHHHhhHHhccCcc-ccccHHHHHHHHHHHHHHH
Confidence            11111 11111111 11111111112244567788889999996 777778889999996 6899999999999999998


Q ss_pred             HHhhH
Q 020588          259 AVTFV  263 (324)
Q Consensus       259 ~~g~~  263 (324)
                      +....
T Consensus       227 l~~~~  231 (410)
T PRK11021        227 ACTVV  231 (410)
T ss_pred             HHHHH
Confidence            87654

>PRK11049 D-alanine/D-serine/glycine permease; Provisional

Probab=98.86  E-value=4.6e-07  Score=89.02  Aligned_cols=240  Identities=11%  Similarity=0.026  Sum_probs=136.1

Q ss_pred             cccccccceeehhhhhhhccccccccchhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccccHHHHHHHH
Q 020588           13 FHLEMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHI   92 (324)
Q Consensus        13 ~~~~~~~s~~~~~~~l~~~~iG~GiL~LP~a~~~~~G~i~g~i~li~~~~~~~yt~~lL~~~~~~~~~~~~sy~~l~~~~   92 (324)
                      .+.+|+.+.++.....+++++|+|++-.|-.+.++.|. ..++..++++.+......-+.|.....+. ..++.+.+++.
T Consensus        16 ~~l~r~l~~~~~~~i~vG~~IGsGif~~~g~~~~~aGp-~~i~~~~i~~i~~~~~~~s~aEl~s~~~~-~~~~~~ya~~~   93 (469)
T PRK11049         16 QSLRRNLTNRHIQLIAIGGAIGTGLFMGSGKTISLAGP-SIIFVYMIIGFMLFFVMRAMGELLLSNLE-YKSFSDFASDL   93 (469)
T ss_pred             hhhhccCcHHHHHHHHHhhHHHhHHHHHhhHHHhhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCcHHHHHHHH
Confidence            33556789999999999999999999987754888886 45666667777777777767776432222 23566789999


Q ss_pred             hCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccCCCCCCchhhHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 020588           93 YGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVST  172 (324)
Q Consensus        93 ~G~~g~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~i~~~~~~l~l~~~~~l~~l~~~S~~~~  172 (324)
                      +||...+++.....+...-...+.....+..++..    . ++  .....+..++..++ ..+.. ...|..+++..+..
T Consensus        94 ~g~~~gf~~gW~~~~~~~~~~~a~~~a~~~~~~~~----~-p~--~~~~~~~~~~~~~~-~~iN~-~g~~~~~~i~~~~~  164 (469)
T PRK11049         94 LGPWAGYFTGWTYWFCWVVTGIADVVAITAYAQFW----F-PD--LSDWVASLAVVLLL-LSLNL-ATVKMFGEMEFWFA  164 (469)
T ss_pred             hCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----c-CC--CcHHHHHHHHHHHH-HHHHH-HhHHHHHHHHHHHH
Confidence            99999998888877665433334444444333322    2 22  12222212111111 12212 22344444443322


Q ss_pred             HHHHHHHHHHhhhhh--c-cCccCCC-C--cC-CC---CCCcchhhhhHHhhhhHHHHHhc-cCchhhhhccccCchhhh
Q 020588          173 VLSTIYIVIAIWLSV--R-DGLKNPA-R--DY-SI---PGTTATKIFESIGACANLVFAFN-TGMLPEIQATIRQPVVEN  241 (324)
Q Consensus       173 ~~~~~~~~i~i~~~~--~-~~~~~~~-~--~~-~~---~~~~~~~~~~~~~a~~i~~faf~-h~~~~~i~~~m~~ps~~~  241 (324)
                      ..-+....+.++.++  . .+...++ .  .. +.   .+..+..+.++..++....|+|. .......-+|+|||+ |+
T Consensus       165 ~~kl~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~-r~  243 (469)
T PRK11049        165 MIKIVAIVALIVVGLVMVAMHFQSPTGVEASFAHLWNDGGMFPKGLSGFFAGFQIAVFAFVGIELVGTTAAETKDPE-KS  243 (469)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcccccCCCCCCCcccHHHHHHHHHHHHHHHhcHHHHHHHHHHhcCHh-hH
Confidence            211111111111111  1 1110010 0  01 00   01112233457788889999996 777788889999995 68


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhHH
Q 020588          242 MMKALYFQFSVGVLPMFAVTFVG  264 (324)
Q Consensus       242 ~~~~~~~s~~~~~~~Y~~~g~~g  264 (324)
                      .+|+...+.....+.|++....-
T Consensus       244 iPrai~~~~~~~~~~y~l~~~~~  266 (469)
T PRK11049        244 LPRAINSIPIRIIMFYVFALIVI  266 (469)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999877777778887655443

>PRK10580 proY putative proline-specific permease; Provisional

Probab=98.82  E-value=9.3e-07  Score=86.58  Aligned_cols=241  Identities=9%  Similarity=0.025  Sum_probs=135.4

Q ss_pred             cCccccccccceeehhhhhhhccccccccchhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccccHHHHH
Q 020588           10 SYFFHLEMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLA   89 (324)
Q Consensus        10 ~~~~~~~~~~s~~~~~~~l~~~~iG~GiL~LP~a~~~~~G~i~g~i~li~~~~~~~yt~~lL~~~~~~~~~~~~sy~~l~   89 (324)
                      |.+.+.+|+.+.++..+..+++++|+|++.+|..+.+..|- .+++..++.+++....+.-+.|......+. -..-+.+
T Consensus         2 ~~~~~l~r~L~~~~~~~i~vg~~IG~Gif~~~g~~~~~aG~-~~~l~~~i~~i~~~~~a~~~aEl~s~~P~~-Gg~y~y~   79 (457)
T PRK10580          2 ESKNKLKRGLSTRHIRFMALGSAIGTGLFYGSADAIKMAGP-SVLLAYIIGGVAAYIIMRALGEMSVHNPAA-SSFSRYA   79 (457)
T ss_pred             CCCccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-HHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-CCHHHHH
Confidence            34455667789999999999999999999998875666775 467777778888888888888875422111 1233467


Q ss_pred             HHHhCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccCCCCCCchhhHHHHHHHHHHHHhcCCCCcchHHHHH
Q 020588           90 GHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLG  169 (324)
Q Consensus        90 ~~~~G~~g~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~i~~~~~~l~l~~~~~l~~l~~~S~  169 (324)
                      ++.+||...+++.....+.....+.......+..++.    +. ++  .....+.+...+++ ..+ -++..|..+....
T Consensus        80 ~~~~G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~----~~-~~--~~~~~~~~~~~~l~-~~l-n~~gv~~~~~~~~  150 (457)
T PRK10580         80 QENLGPLAGYITGWTYCFEILIVAIADVTAFGIYMGV----WF-PT--VPHWIWVLSVVLII-CAV-NLMSVKVFGELEF  150 (457)
T ss_pred             HHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hC-CC--CChHHHHHHHHHHH-HHH-HHccchhHHHHHH
Confidence            8899999988888876655443333333333333322    21 11  12222322222211 122 2223444444443


Q ss_pred             HHHHHHHHHHHHH--hh--hhhccC--ccCC-CCcCCCC--CCcchhhhhHHhhhhHHHHHhc-cCchhhhhccccCchh
Q 020588          170 VSTVLSTIYIVIA--IW--LSVRDG--LKNP-ARDYSIP--GTTATKIFESIGACANLVFAFN-TGMLPEIQATIRQPVV  239 (324)
Q Consensus       170 ~~~~~~~~~~~i~--i~--~~~~~~--~~~~-~~~~~~~--~~~~~~~~~~~~a~~i~~faf~-h~~~~~i~~~m~~ps~  239 (324)
                      ...+.-+....+.  ..  +.....  ..++ +.+....  +..+..+.++..++....|+|. .......-+|+|||+ 
T Consensus       151 ~~~~~~~~~l~~~ii~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~fsf~G~e~~~~~a~E~knP~-  229 (457)
T PRK10580        151 WFSFFKVATIIIMIVAGIGIIIWGIGNGGQPTGIHNLWSNGGFFSNGWLGMVMSLQMVMFAYGGIEIIGITAGEAKDPE-  229 (457)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCccccCCCCCCCCcchHHHHHHHHHHHHHHhCHHHHHHHHHHhcChh-
Confidence            2211111111111  11  111110  0011 0110010  1112233456778888999996 777777889999995 


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhh
Q 020588          240 ENMMKALYFQFSVGVLPMFAVTF  262 (324)
Q Consensus       240 ~~~~~~~~~s~~~~~~~Y~~~g~  262 (324)
                      |+.+|+...+.....++|+....
T Consensus       230 k~iPrAi~~~~~~~~~~y~~~~~  252 (457)
T PRK10580        230 KSIPRAINSVPMRILVFYVGTLF  252 (457)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHH
Confidence            57999988877777788866543

>TIGR00930 2a30 K-Cl cotransporter

Probab=98.81  E-value=6.3e-07  Score=94.58  Aligned_cols=241  Identities=9%  Similarity=0.018  Sum_probs=141.9

Q ss_pred             ccccceeehhhhh-hhccccccc-cchhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhhh-cCcccccHHHHHHHH
Q 020588           16 EMLDSWFQVGFVL-TTGINSAYV-LGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEF-GGKRHIRYRDLAGHI   92 (324)
Q Consensus        16 ~~~~s~~~~~~~l-~~~~iG~Gi-L~LP~a~~~~~G~i~g~i~li~~~~~~~yt~~lL~~~~~~-~~~~~~sy~~l~~~~   92 (324)
                      .++.+++++++.- +.+++|+|+ +.++|. ..++|...+++..+++++++..|..-+.+.... .-+.--.|. ..+++
T Consensus        75 ~~~lG~~~GV~~~~~~nIiGv~iFlr~~~V-vg~aG~~~sll~~~la~~vtlltaLS~seiaTng~p~aGG~Y~-yisra  152 (953)
T TIGR00930        75 AVKFGWVMGVLVPCLLNIWGVILFLRLSWI-VGQAGIGLSLLIILLCCCVTTITGLSMSAIATNGVVKGGGAYY-LISRS  152 (953)
T ss_pred             CcccceeEeeeHhhhHhHheeeeeeeHHHH-HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHH-HHHHH
Confidence            4567888888877 999999996 556665 889998778888999999999999999887542 101111233 45678


Q ss_pred             hCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccC--CCCC-CchhhHHHHHHHHHHHHhcCCCCcchHHHHH
Q 020588           93 YGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKD--DHTM-KLPYFIAIAGFVCALFAIGIPNLSALGVWLG  169 (324)
Q Consensus        93 ~G~~g~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~--~~~~-~~~~~~~i~~~~~~l~l~~~~~l~~l~~~S~  169 (324)
                      |||.....+.......+...+..|.+..++.+..++......  .... ..+.+..++.+++ ..+.+ ...|..+++..
T Consensus       153 lGp~~Gf~iG~~~~la~~va~A~~~~Gf~eyl~~lf~~~~~~~~~~~~~~~~iia~i~l~ll-~~In~-~Gvk~~ak~q~  230 (953)
T TIGR00930       153 LGPEFGGSIGLIFAFANAVAVAMYVVGFAETVLDLLRENGSKIMVDPINDIRIYGTVTVVVL-LGISF-AGMEWENKAQV  230 (953)
T ss_pred             hCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCccccchHHHHHHHHHH-HHHHH-hhHHHHHHHHH
Confidence            999888888888777777778888888888888776432100  0011 1122222111111 12211 22333333333


Q ss_pred             HHHHHHHHHHHHHhhhh-hccCccCCCC----------cCCC-CCCcchhhhhHHhhhhHHHHHhc-cCchhhhhccccC
Q 020588          170 VSTVLSTIYIVIAIWLS-VRDGLKNPAR----------DYSI-PGTTATKIFESIGACANLVFAFN-TGMLPEIQATIRQ  236 (324)
Q Consensus       170 ~~~~~~~~~~~i~i~~~-~~~~~~~~~~----------~~~~-~~~~~~~~~~~~~a~~i~~faf~-h~~~~~i~~~m~~  236 (324)
                      +..+..+. .++.+++. +......+..          ..+. ++. .....++...++++..||. ......+-.|+|+
T Consensus       231 vl~vi~ll-~ll~~iig~~~~~~~~~~~g~~~~~~~~f~~n~~p~~-~~~~~~f~~~~ai~F~A~tGi~agan~sgElKn  308 (953)
T TIGR00930       231 LFLVIVLL-SILNIFVGTIIPAFDKPAKGFFGLGNEIFSENFIPGI-PGPEGGFFSLFGIFFPSVTGILAGANISGDLKD  308 (953)
T ss_pred             HHHHHHHH-HHHHHHheeeecCCCCCccceeeccchhhhhccCCCC-CCcccHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            32211111 11111111 1111000000          0000 000 0111125666787888885 5555667789999


Q ss_pred             chhhhHHHHHHHHHHHHHHHHHHHhhH
Q 020588          237 PVVENMMKALYFQFSVGVLPMFAVTFV  263 (324)
Q Consensus       237 ps~~~~~~~~~~s~~~~~~~Y~~~g~~  263 (324)
                      |+ |+.++++..+..+++++|+++.+.
T Consensus       309 P~-r~IPratl~ai~i~~vlYllv~~~  334 (953)
T TIGR00930       309 PQ-KAIPKGTLLAILTTTVVYLGSVVL  334 (953)
T ss_pred             hh-hhhHHHHHHHHHHHHHHHHHHHHH
Confidence            96 689999999999999999998753

>PRK10238 aromatic amino acid transporter; Provisional

Probab=98.81  E-value=6.4e-07  Score=87.74  Aligned_cols=237  Identities=12%  Similarity=0.036  Sum_probs=137.1

Q ss_pred             ccccccccceeehhhhhhhccccccccchhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccccHHHHHHH
Q 020588           12 FFHLEMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGH   91 (324)
Q Consensus        12 ~~~~~~~~s~~~~~~~l~~~~iG~GiL~LP~a~~~~~G~i~g~i~li~~~~~~~yt~~lL~~~~~~~~~~~~sy~~l~~~   91 (324)
                      |.+.+|+.+.++..+.-+++++|+|++..|-.+.+..|- ..++..++.+++....+.-+.|........ -++-+-+++
T Consensus         7 ~~~l~r~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~Gp-~~i~~~~i~gi~~~~v~~s~aEl~s~~P~a-Gg~y~~~~~   84 (456)
T PRK10238          7 GEQLKRGLKNRHIQLIALGGAIGTGLFLGSASVIQSAGP-GIILGYAIAGFIAFLIMRQLGEMVVEEPVA-GSFSHFAYK   84 (456)
T ss_pred             chhhhccCcHHHHHHHHhhccccchHHHhhHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCHHHHHHH
Confidence            334567889999999999999999999999885667774 456666777777777777777764321111 134455777


Q ss_pred             HhCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccCCCCCCchhhHHHHHHHHHHHHhcCCCCcchHHHHHHH
Q 020588           92 IYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVS  171 (324)
Q Consensus        92 ~~G~~g~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~i~~~~~~l~l~~~~~l~~l~~~S~~~  171 (324)
                      .+||...+++.....+.....+.+.....++.++..    . ++  .....+..++..++ ..+... ..|..+.+....
T Consensus        85 ~~g~~~gf~~Gw~~~~~~~~~~~~~~~~~~~~~~~~----~-p~--~~~~~~~~i~~~~~-~~lN~~-gv~~~~~~~~~~  155 (456)
T PRK10238         85 YWGSFAGFASGWNYWVLYVLVAMAELTAVGKYIQFW----Y-PE--IPTWVSAAVFFVVI-NAINLT-NVKVFGEMEFWF  155 (456)
T ss_pred             HcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----c-Cc--CcHHHHHHHHHHHH-HHHHHH-hHHHHHHHHHHH
Confidence            899999999998888777766666665555555432    1 21  12222222221111 122111 233444444332


Q ss_pred             HHHHHHHHHHHhhhh---hccCccCCCCcC-CC---CCCcchhhhhHHhhhhHHHHHhc-cCchhhhhccccCchhhhHH
Q 020588          172 TVLSTIYIVIAIWLS---VRDGLKNPARDY-SI---PGTTATKIFESIGACANLVFAFN-TGMLPEIQATIRQPVVENMM  243 (324)
Q Consensus       172 ~~~~~~~~~i~i~~~---~~~~~~~~~~~~-~~---~~~~~~~~~~~~~a~~i~~faf~-h~~~~~i~~~m~~ps~~~~~  243 (324)
                      .+.-+...++.+++.   +..+...++... +.   .+..+..+.++..+++...|+|. .......-+|+|||+ |+.+
T Consensus       156 ~~iki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~aeE~knP~-r~iP  234 (456)
T PRK10238        156 AIIKVIAVVAMIIFGGWLLFSGNGGPQATVSNLWDQGGFLPHGFTGLVMMMAIIMFSFGGLELVGITAAEADNPE-QSIP  234 (456)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCCCCccccccCCCCCCccccHHHHHHHHHHHHHHhcCHHHHHHHHHhhcChh-hHHH
Confidence            222221111111111   111111111111 10   11112223355667778899996 677777888999996 6899


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 020588          244 KALYFQFSVGVLPMFAV  260 (324)
Q Consensus       244 ~~~~~s~~~~~~~Y~~~  260 (324)
                      |+...+.....+.|+..
T Consensus       235 rAi~~~~~~i~~~y~~~  251 (456)
T PRK10238        235 KATNQVIYRILIFYIGS  251 (456)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99987777777777654

>PRK15049 L-asparagine permease; Provisional

Probab=98.78  E-value=2e-06  Score=85.21  Aligned_cols=239  Identities=13%  Similarity=0.081  Sum_probs=129.0

Q ss_pred             ccccceeehhhhhhhccccccccchhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccccHHHHHHHHhCC
Q 020588           16 EMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYGR   95 (324)
Q Consensus        16 ~~~~s~~~~~~~l~~~~iG~GiL~LP~a~~~~~G~i~g~i~li~~~~~~~yt~~lL~~~~~~~~~~~~sy~~l~~~~~G~   95 (324)
                      +|+.+.++..+.-+++++|+|+...|..+.+..|- .+++..++.+++....+.-+.|......+. -+.-+-+++.+||
T Consensus        27 ~r~L~~~~~~~i~~G~~IGsGiF~~~g~~~~~aGp-~~il~~li~~i~~~~v~~slaELas~~P~a-Gg~y~y~~~~~G~  104 (499)
T PRK15049         27 HKAMGNRQVQMIAIGGAIGTGLFLGAGARLQMAGP-ALALVYLICGLFSFFILRALGELVLHRPSS-GSFVSYAREFLGE  104 (499)
T ss_pred             hccCCHhHhHHHhhhccccchHHHhhHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-CCHHHHHHHHhCc
Confidence            34567888888999999999999888854777785 466777777888888888888864422111 2345567889999


Q ss_pred             CcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccCCCCCCchhhHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHH
Q 020588           96 RAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTVLS  175 (324)
Q Consensus        96 ~g~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~i~~~~~~l~l~~~~~l~~l~~~S~~~~~~~  175 (324)
                      +..+++.....+........-....+..+.     ++..-...  ..|....++.++....-+...|....+.....+.-
T Consensus       105 ~~gf~~GW~~~l~~~~~~~~~~~a~~~~~~-----~~~~~~~~--~~~~~~~~~~~l~~~iN~~gvk~~~~i~~~~~~ik  177 (499)
T PRK15049        105 KAAYVAGWMYFINWAMTGIVDITAVALYMH-----YWGAFGGV--PQWVFALAALTIVGTMNMIGVKWFAEMEFWFALIK  177 (499)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhccCCCC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            988887777665543322222222222221     11110111  23332222221111111112333333333222111


Q ss_pred             HHHHHH--Hhhhh-hccCccCCCC--cCC-C---CCCcchhhhhHHhhhhHHHHHhc-cCchhhhhccccCchhhhHHHH
Q 020588          176 TIYIVI--AIWLS-VRDGLKNPAR--DYS-I---PGTTATKIFESIGACANLVFAFN-TGMLPEIQATIRQPVVENMMKA  245 (324)
Q Consensus       176 ~~~~~i--~i~~~-~~~~~~~~~~--~~~-~---~~~~~~~~~~~~~a~~i~~faf~-h~~~~~i~~~m~~ps~~~~~~~  245 (324)
                      +...+.  ++.+. ...+...++.  ... .   .+..+..+.+.+.++....|+|. .......-+|+|||+ |+.+|+
T Consensus       178 i~~l~~~ii~~i~~~~~~~~~~~~~~~f~~~~~~~~~~p~g~~~~~~~~~~~~faf~G~e~i~~~aeE~knP~-r~iPrA  256 (499)
T PRK15049        178 VLAIVTFLVVGTVFLGSGQPLDGNTTGFHLITDNGGFFPHGLLPALVLIQGVVFAFASIEMVGTAAGECKDPQ-TMVPKA  256 (499)
T ss_pred             HHHHHHHHHHHHHHHhCCCCCCCCCcccccccCCCCcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcChh-hHHHHH
Confidence            111111  11111 1111110000  000 0   01112233345555667899996 777777888999996 589999


Q ss_pred             HHHHHHHHHHHHHHHhhHH
Q 020588          246 LYFQFSVGVLPMFAVTFVG  264 (324)
Q Consensus       246 ~~~s~~~~~~~Y~~~g~~g  264 (324)
                      +..++....++|+.....-
T Consensus       257 i~~~~~~i~~~yi~~~~~~  275 (499)
T PRK15049        257 INSVIWRIGLFYVGSVVLL  275 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            9988888888888765543

>PRK10836 lysine transporter; Provisional

Probab=98.78  E-value=3.6e-06  Score=83.20  Aligned_cols=248  Identities=11%  Similarity=0.069  Sum_probs=132.7

Q ss_pred             eeeecCccccccccceeehhhhhhhccccccccchhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccccH
Q 020588            6 YVSSSYFFHLEMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRY   85 (324)
Q Consensus         6 ~~~~~~~~~~~~~~s~~~~~~~l~~~~iG~GiL~LP~a~~~~~G~i~g~i~li~~~~~~~yt~~lL~~~~~~~~~~~~sy   85 (324)
                      |++-.++++.+|+.+.++..+..+++++|+|++.+|-.+.++.|-...++..+++++++...+.-+.|......+. -..
T Consensus         4 ~~~~~~~~~l~r~L~~~~~~~l~vG~~IGsGif~~~g~~~~~aGp~~~l~a~~i~g~~~~~~al~~aEL~s~~P~s-Gg~   82 (489)
T PRK10836          4 ETKTTEAPGLRRELKARHLTMIAIGGSIGTGLFVASGATISQAGPGGALLSYMLIGLMVYFLMTSLGELAAYMPVS-GSF   82 (489)
T ss_pred             ccccCCcccccccCcHHHHHHHHHhhhhhhhhhHhhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCH
Confidence            4555666667788999999999999999999999997547788864467777888888888888888864422111 133


Q ss_pred             HHHHHHHhCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccCCCCCCchhhHHHHHHHHHHHHhcCCCCcchH
Q 020588           86 RDLAGHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALG  165 (324)
Q Consensus        86 ~~l~~~~~G~~g~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~i~~~~~~l~l~~~~~l~~l~  165 (324)
                      -.-+++.+||..++++......... .+.+.....++.   +.+ .+.++  .....+..++.+++ ..+.. ...|..+
T Consensus        83 y~y~~~~~g~~~gf~~Gw~~~~~~~-~~~a~~~~a~~~---~~~-~~~~~--~~~~~~~~~~~~~~-~~lN~-~gv~~~~  153 (489)
T PRK10836         83 ATYGQNYVEEGFGFALGWNYWYNWA-VTIAVDLVAAQL---VMS-WWFPD--TPGWIWSALFLGVI-FLLNY-ISVRGFG  153 (489)
T ss_pred             HHHHHHHcChHHHHHHHHHHHHHHH-HHHHHHHHHHHH---Hhh-hcCCC--CchHHHHHHHHHHH-HHHHH-Hcchhhh
Confidence            4456678888877777665444322 222221111111   111 11122  11111222111111 12222 1233333


Q ss_pred             HHHHH---HHHHHH-HHHHHHhhh--hhccCccCCCC-cCCCCCCc-chhhhhHHhhhhHHHHHhc-cCchhhhhccccC
Q 020588          166 VWLGV---STVLST-IYIVIAIWL--SVRDGLKNPAR-DYSIPGTT-ATKIFESIGACANLVFAFN-TGMLPEIQATIRQ  236 (324)
Q Consensus       166 ~~S~~---~~~~~~-~~~~i~i~~--~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~a~~i~~faf~-h~~~~~i~~~m~~  236 (324)
                      .....   .-+..+ .+..+.+..  ...+..+..+. +.+..+.+ +..+...+.+.....|+|. .......-+|+||
T Consensus       154 ~~~~~~~~~ki~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~kn  233 (489)
T PRK10836        154 EAEYWFSLIKVTTVIVFIIVGVLMIIGIFKGAEPAGWSNWTIGDAPFAGGFAAMIGVAMIVGFSFQGTELIGIAAGESED  233 (489)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccCCCCCCCCcccHHHHHHHHHHHHHHHccHHHHHHHHHHhcC
Confidence            22221   111111 111111111  11111110000 11100001 1123334444555679996 6666777889999


Q ss_pred             chhhhHHHHHHHHHHHHHHHHHHHhhHH
Q 020588          237 PVVENMMKALYFQFSVGVLPMFAVTFVG  264 (324)
Q Consensus       237 ps~~~~~~~~~~s~~~~~~~Y~~~g~~g  264 (324)
                      |+ |+.+|++..+...+.++|+.....-
T Consensus       234 P~-r~iPrAi~~~~~~v~~~Yvl~~~~~  260 (489)
T PRK10836        234 PA-KNIPRAVRQVFWRILLFYVFAILII  260 (489)
T ss_pred             HH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            96 6899999999999999998875543

>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=98.77  E-value=6.7e-07  Score=83.48  Aligned_cols=233  Identities=15%  Similarity=0.187  Sum_probs=137.0

Q ss_pred             ccceeehhhhhhhccccccccchhhhhhhcc---chhHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccccHHHHHHHHhC
Q 020588           18 LDSWFQVGFVLTTGINSAYVLGYPGTVMVPL---GWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYG   94 (324)
Q Consensus        18 ~~s~~~~~~~l~~~~iG~GiL~LP~a~~~~~---G~i~g~i~li~~~~~~~yt~~lL~~~~~~~~~~~~sy~~l~~~~~G   94 (324)
                      |.|..|...-+..+.+|+|++.+|.. ..+.   ||+.    .++.+.......++..+..++..+  .+..|..++.+|
T Consensus         1 kIS~~Q~~~l~~~~~~g~~~l~~p~~-l~~~~~d~Wi~----~ll~~~~~l~~~~l~~~l~~~~p~--~~l~~~~~~~~G   73 (320)
T PF03845_consen    1 KISPRQLFFLLISSIIGTGILFLPAI-LAEQAGDAWIS----VLLGGLIGLLLALLIYYLLKRFPG--KTLVEISEKLFG   73 (320)
T ss_pred             CcCHHHHHHHHHHHHHHHHHHHHHHH-HHHHcCCcHHH----HHHHHHHHHHHHHHHHHHHHHCCC--CCHHHHHHHHhC
Confidence            45778889999999999999999998 5444   5653    333444445555555555443222  378999999999


Q ss_pred             CCcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccCCCCCCchhhHHHHHHHHHHHHhcCCCCcchHHHHHHHHHH
Q 020588           95 RRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTVL  174 (324)
Q Consensus        95 ~~g~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~i~~~~~~l~l~~~~~l~~l~~~S~~~~~~  174 (324)
                      |+.+++......+..+......+-..++.++..   .. +    ++..|.+....+.+......+.++.+++.+.+....
T Consensus        74 k~lg~ii~~~~~l~~l~~~~~~lr~~~~~i~~~---~l-p----~TP~~~i~~~~ll~~~y~a~~G~e~i~R~~~~~~~~  145 (320)
T PF03845_consen   74 KWLGKIINLLYILYFLLISALVLREFSEFIKTY---LL-P----ETPIWVIILLFLLVAAYAARKGIEVIARVAEILFPI  145 (320)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hc-C----cCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            999888888777666665555554444444432   11 1    233343332222212333345777777765543222


Q ss_pred             HHHHHHHHhhhhhccCccCCCCcCCCCCCcchhhhhHHhhhhHHHHHhc-cCchhhhhccccCchhhhHHHHHHHHHHHH
Q 020588          175 STIYIVIAIWLSVRDGLKNPARDYSIPGTTATKIFESIGACANLVFAFN-TGMLPEIQATIRQPVVENMMKALYFQFSVG  253 (324)
Q Consensus       175 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~faf~-h~~~~~i~~~m~~ps~~~~~~~~~~s~~~~  253 (324)
                      .+....++......+.    +.+.-.|.. ..++.+.+.+.-...+.|+ ...+.-+....|+|  ++.+|....+....
T Consensus       146 ~~i~~~~i~~~~~~~~----~~~~l~P~~-~~g~~~i~~~~~~~~~~~~~~~~~l~~~p~~~~~--~~~~k~~~~~~~~~  218 (320)
T PF03845_consen  146 FLILLLLILLLSIPNI----DWDNLLPVL-ESGIKPILKGSLVISFPFGGIEILLFLFPFVKDK--KKLKKSLLIAILIS  218 (320)
T ss_pred             HHHHHHHHHHHhcccC----CHHHeeCcc-cCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc--hHHHHHHHHHHHHH
Confidence            2222112122222111    111111111 1233456666555666675 44444566677888  67788899999898


Q ss_pred             HHHHHHHhhHHhhhcCCCc
Q 020588          254 VLPMFAVTFVGYWAYGNSS  272 (324)
Q Consensus       254 ~~~Y~~~g~~gy~~fG~~~  272 (324)
                      ..+|...-......||.+.
T Consensus       219 ~~~~~~~~~~~i~vfG~~~  237 (320)
T PF03845_consen  219 GLFLLFIIFITIGVFGPEL  237 (320)
T ss_pred             HHHHHHHHHHHHHhcCHHH
Confidence            8888887777788888653

A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane

>TIGR00911 2A0308 L-type amino acid transporter

Probab=98.76  E-value=1.5e-06  Score=86.15  Aligned_cols=245  Identities=10%  Similarity=-0.007  Sum_probs=129.9

Q ss_pred             cccccccceeehhhhhhhccccccccchhhhhhhccchh-HHHHHHHHHHHHHHHHHHHHHHHhhhcCcccccHHHHHHH
Q 020588           13 FHLEMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWI-AGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGH   91 (324)
Q Consensus        13 ~~~~~~~s~~~~~~~l~~~~iG~GiL~LP~a~~~~~G~i-~g~i~li~~~~~~~yt~~lL~~~~~~~~~~~~sy~~l~~~   91 (324)
                      .+.+|+.+.++.....+++++|+|++..|..+....|-. ..++..++.+++.........|......+. -..-.-.++
T Consensus        38 ~~l~r~l~~~~~~~l~vg~iiGsGif~~~~~~~~~~G~~g~~~~~~ii~~i~~~~~al~~aELas~~P~s-GG~y~~~~~  116 (501)
T TIGR00911        38 VALKKEITLLSGVGIIVGTIIGSGIFVSPKGVLKNAGSVGLALIMWAVCGIFSIVGALVYAELGTTIPKS-GGEYNYILE  116 (501)
T ss_pred             cccCccccHhHhhHhheeceEEeeEeecHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-CchhhhHHh
Confidence            445667899999988899999999999997635556632 122444556667777777777764321111 112233556


Q ss_pred             HhCCCcchhHHHHHHH-HHHHHHHHHHHHHHhhHHHHHHHhccCCCCCCchh-hHHHHHHHHHHHHhcCCCCcchHHHHH
Q 020588           92 IYGRRAYALTWGLQYV-NLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPY-FIAIAGFVCALFAIGIPNLSALGVWLG  169 (324)
Q Consensus        92 ~~G~~g~~~v~~~~~~-~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~-~~~i~~~~~~l~l~~~~~l~~l~~~S~  169 (324)
                      .+||+..++....... ...+.+..+....++.+..   .+. ++....... ..+..+++.+.-..-....|..++++.
T Consensus       117 ~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~---~~~-~~~~~~~~~~~~i~~~~i~~~~~ln~~Gvk~~~~~~~  192 (501)
T TIGR00911       117 VFGPLLAFLRLWIELLVIRPGSQAVNALNFAIYILT---PVF-PDCEVPEWAIRLVAVLCVLLLTLVNCLSVKWATRVQD  192 (501)
T ss_pred             HhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---Hhc-CCCCCchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            8999887766554332 1123333333434443311   111 111111111 111111111111111234455555555


Q ss_pred             HHHHHHHHHHHHHhhhhhc--cCccCCCCc--CCCCCCcchhhhhHHhhhhHHHHHhc-cCchhhhhccccCchhhhHHH
Q 020588          170 VSTVLSTIYIVIAIWLSVR--DGLKNPARD--YSIPGTTATKIFESIGACANLVFAFN-TGMLPEIQATIRQPVVENMMK  244 (324)
Q Consensus       170 ~~~~~~~~~~~i~i~~~~~--~~~~~~~~~--~~~~~~~~~~~~~~~~a~~i~~faf~-h~~~~~i~~~m~~ps~~~~~~  244 (324)
                      +.....+...++.++.++.  .....++.+  ....+. ..+..++..++....|+|. .......-+|+|||+ |+.+|
T Consensus       193 i~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~f~~~-~~~~~~~~~a~~~~~~af~G~e~~~~~a~E~knP~-r~iPr  270 (501)
T TIGR00911       193 IFTACKLLALLLIIITGWVQLGKGGVESLNPKNAFEGT-ETSAGGIVLAFYSGIWAYGGWNYLNFVTEEVKNPY-RTLPI  270 (501)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCccccCcccccCCC-CCcHHHHHHHHHHHHHHHHhHHHHhhhHHHhcCch-hhhHH
Confidence            4333222222222222221  111100111  111111 1223456778888999996 666777889999995 68999


Q ss_pred             HHHHHHHHHHHHHHHHhhHH
Q 020588          245 ALYFQFSVGVLPMFAVTFVG  264 (324)
Q Consensus       245 ~~~~s~~~~~~~Y~~~g~~g  264 (324)
                      +...+..++.++|++....-
T Consensus       271 Ai~~s~~~v~~~Y~l~~~a~  290 (501)
T TIGR00911       271 AIIISMPIVTFIYVLTNIAY  290 (501)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999875443

>TIGR00908 2A0305 ethanolamine permease

Probab=98.74  E-value=9e-07  Score=86.25  Aligned_cols=239  Identities=11%  Similarity=-0.031  Sum_probs=135.5

Q ss_pred             ccccccccceeehhhhhhhccccccccchhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccccHHHHHHH
Q 020588           12 FFHLEMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGH   91 (324)
Q Consensus        12 ~~~~~~~~s~~~~~~~l~~~~iG~GiL~LP~a~~~~~G~i~g~i~li~~~~~~~yt~~lL~~~~~~~~~~~~sy~~l~~~   91 (324)
                      +.+-+|+.+.++....-++.++|....+.+.+ .+..|+..-++..++.+++....+..+.|......+. -..-.-+++
T Consensus         2 ~~~l~r~l~~~~~~~l~~~~~igg~~~~~~~~-~~~~G~~~~~~~~~i~~~~~~~~a~~~aEl~s~~P~~-Gg~y~~~~~   79 (442)
T TIGR00908         2 HRQLKKTLATWQLWGIGVGYVISGDYAGWNFG-LAQGGWGGFVVATLLVATMYLTFCFSLAELSTMIPTA-GGGYGFARR   79 (442)
T ss_pred             CchhhccCCHHHHHHhHHHHHhhccchhHhhH-HHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-CCHHHHHHH
Confidence            44566778888888888888888555666888 8899986444555556666666666777764322111 123345688


Q ss_pred             HhCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccCCCCCCchhhHHHHHHHHHHHHhcCCCCcchHHHHHHH
Q 020588           92 IYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVS  171 (324)
Q Consensus        92 ~~G~~g~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~i~~~~~~l~l~~~~~l~~l~~~S~~~  171 (324)
                      .+||+..+++.....+.......++....++.+...++     +  .....+.+++..+. ..+. .+..|..+++..+.
T Consensus        80 ~~G~~~gf~~gw~~~~~~~~~~~~~a~~~~~~l~~~~p-----~--~~~~~~~~~~~~~~-~~ln-~~g~~~~~~i~~~~  150 (442)
T TIGR00908        80 AFGPWGGFLAGTAILIEFAFAPPAIACFIGAYCESLFP-----V--GPGWLAALVFYIVF-IGIN-ILGVGEAAKLEFVV  150 (442)
T ss_pred             HhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----c--CchhHHHHHHHHHH-HHHH-HHHHHHHHhHHHHH
Confidence            99999998888887777666666677777777655432     1  11111111111111 1121 12234444444332


Q ss_pred             HHHHHHHHHHHhhhhhccCccCCCCc--C-CCCCCcchhhhhHHhhhhHHHHHhc-cCchhhhhccccCchhhhHHHHHH
Q 020588          172 TVLSTIYIVIAIWLSVRDGLKNPARD--Y-SIPGTTATKIFESIGACANLVFAFN-TGMLPEIQATIRQPVVENMMKALY  247 (324)
Q Consensus       172 ~~~~~~~~~i~i~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~a~~i~~faf~-h~~~~~i~~~m~~ps~~~~~~~~~  247 (324)
                      .+..+....+.++....+....+-..  . +..+..+..+.+++.++....|+|. +......-+|+|||+ |+.+|++.
T Consensus       151 ~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~-r~iprai~  229 (442)
T TIGR00908       151 TAVAIIALGVFIGAMVPHFDSANLFNGPQTGASSFLPGAYVGVFAAIPFAIWFFLAVEGVAMAAEETKNPK-RDIPRGLI  229 (442)
T ss_pred             HHHHHHHHHHHHHHHhccCCHHHhccCCccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc-cccCHHHH
Confidence            22221111111111111110000000  0 0001112223456777788899996 777777888999996 58999999


Q ss_pred             HHHHHHHHHHHHHhh
Q 020588          248 FQFSVGVLPMFAVTF  262 (324)
Q Consensus       248 ~s~~~~~~~Y~~~g~  262 (324)
                      .+..++..+|+....
T Consensus       230 ~s~~~~~~~~~~~~~  244 (442)
T TIGR00908       230 GAILTLLALAAGILV  244 (442)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999888888876644

The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.

>PRK10746 putative transport protein YifK; Provisional

Probab=98.73  E-value=4.5e-06  Score=81.92  Aligned_cols=239  Identities=12%  Similarity=-0.003  Sum_probs=138.1

Q ss_pred             cccccccceeehhhhhhhccccccccchhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccccHHHHHHHH
Q 020588           13 FHLEMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHI   92 (324)
Q Consensus        13 ~~~~~~~s~~~~~~~l~~~~iG~GiL~LP~a~~~~~G~i~g~i~li~~~~~~~yt~~lL~~~~~~~~~~~~sy~~l~~~~   92 (324)
                      .+-+|+.+.++..+.-+++++|+|++..|..+.+..|- ..++..++.+.+....+.-+.|......+ .-++.+-+++.
T Consensus         6 ~~l~r~L~~~~~~~i~ig~~IGtGlf~~~g~~l~~aGp-~~~l~~~i~g~~~~~v~~~~aEl~~~~P~-sGg~~~y~~~~   83 (461)
T PRK10746          6 PELQRGLEARHIELIALGGTIGVGLFMGAASTLKWAGP-SVLLAYIIAGLFVFFIMRSMGEMLFLEPV-TGSFAVYAHRY   83 (461)
T ss_pred             hHHhccCcHHHHHHHHHHhhhhhhHHHHhHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCHHHHHHHH
Confidence            34566789999999999999999999988775777885 35566667777777888888886432211 12566778999


Q ss_pred             hCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccCCCCCCchhhHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 020588           93 YGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVST  172 (324)
Q Consensus        93 ~G~~g~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~i~~~~~~l~l~~~~~l~~l~~~S~~~~  172 (324)
                      +||+..+++.....+.....+.+.....+..++..    . ++  .....+..+...+. ..+.. ...|..+.+.....
T Consensus        84 ~g~~~Gf~~gw~~~~~~~~~~~~~~~a~~~~l~~~----~-p~--~~~~~~~~~~~~~~-~~lN~-~gv~~~~~~e~~~~  154 (461)
T PRK10746         84 MSPFFGYLTAWSYWFMWMAVGISEITAIGVYVQFW----F-PE--MAQWIPALIAVALV-ALANL-AAVRLYGEIEFWFA  154 (461)
T ss_pred             hCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----c-CC--CchHHHHHHHHHHH-HHHHH-HhHHHHHHHHHHHH
Confidence            99999888888777666555555554444444332    1 21  22222322222211 12211 12333333322211


Q ss_pred             HHHH----HHHHHHhhhhhcc-CccCCCCcC-CC---CCCcchhhhhHHhhhhHHHHHhc-cCchhhhhccccCchhhhH
Q 020588          173 VLST----IYIVIAIWLSVRD-GLKNPARDY-SI---PGTTATKIFESIGACANLVFAFN-TGMLPEIQATIRQPVVENM  242 (324)
Q Consensus       173 ~~~~----~~~~i~i~~~~~~-~~~~~~~~~-~~---~~~~~~~~~~~~~a~~i~~faf~-h~~~~~i~~~m~~ps~~~~  242 (324)
                      ..-+    .+.++.+...... +...+.... +.   .+..+..+.++..++....|+|. .......-+|+|||+ |++
T Consensus       155 ~~ki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~~faf~G~e~v~~~a~E~knP~-k~i  233 (461)
T PRK10746        155 MIKVTTIIVMIVIGLGVIFFGFGNGGQSIGFSNLTEHGGFFAGGWKGFLTALCIVVASYQGVELIGITAGEAKNPQ-VTL  233 (461)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHhcChh-hHH
Confidence            1111    1111111111111 111010111 01   01112234567788899999996 777777888999996 699


Q ss_pred             HHHHHHHHHHHHHHHHHHhhH
Q 020588          243 MKALYFQFSVGVLPMFAVTFV  263 (324)
Q Consensus       243 ~~~~~~s~~~~~~~Y~~~g~~  263 (324)
                      +|+...+.....++|+.....
T Consensus       234 P~Ai~~~~~~i~~~yv~~~~~  254 (461)
T PRK10746        234 RSAVGKVLWRILIFYVGAIFV  254 (461)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            999988888888888775433

>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]

Probab=98.66  E-value=1.6e-06  Score=83.73  Aligned_cols=243  Identities=14%  Similarity=0.077  Sum_probs=141.2

Q ss_pred             Cccccccccceeehhhhhhhccccccccchhhhhhhccchh-HHHHHHHHHHHHHHHHHHHHHHHhh---hcCcccccHH
Q 020588           11 YFFHLEMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWI-AGVVGLIIATIVSLNANALIAKLHE---FGGKRHIRYR   86 (324)
Q Consensus        11 ~~~~~~~~~s~~~~~~~l~~~~iG~GiL~LP~a~~~~~G~i-~g~i~li~~~~~~~yt~~lL~~~~~---~~~~~~~sy~   86 (324)
                      +..+.+|+.+.+.+++.++++++|+|+..-|..+.+++|=+ .++++-+++++++.-....-.|.--   +.|.   +|.
T Consensus         6 ~~~~~~kkigll~~v~livg~iIGsGIFvsp~~Vl~~~gsvg~sL~iWv~~gi~s~~galcyaELGT~ipksGg---d~a   82 (479)
T KOG1287|consen    6 EEVQLKKKIGLLSGVSLIVGNIIGSGIFVSPKGVLANTGSVGLSLIIWVFCGIISIIGALCYAELGTSIPKSGG---DYA   82 (479)
T ss_pred             ccccccceeeeecceeEEEEeeEecccccCcHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHhccccCCCc---chh
Confidence            44556788999999999999999999999999977777643 4666667788888777776666522   2333   344


Q ss_pred             HHHHHHhCCCcchhHHHHHHHHHH-HHHHHHHHHHHhh-HHHHHHHhccCCCCCCchhhHHHHHHHHHHHHhcCCCCcch
Q 020588           87 DLAGHIYGRRAYALTWGLQYVNLF-MINTGYIILAGQA-LKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSAL  164 (324)
Q Consensus        87 ~l~~~~~G~~g~~~v~~~~~~~~~-g~~i~y~i~~~~~-l~~i~~~~~~~~~~~~~~~~~~i~~~~~~l~l~~~~~l~~l  164 (324)
                      =+. ++|||.........-.+... ..+..+-+..++. ++..+.     +++.....--+ .+.++ +.+....|..++
T Consensus        83 yi~-~afg~~~aF~~~wvs~l~~~p~~~Ai~altF~~Y~l~p~fp-----~c~~p~~~~~l-la~~~-l~~lt~~n~~~V  154 (479)
T KOG1287|consen   83 YIS-EAFGPFPAFLFLWVSLLIIVPTSAAIIALTFATYLLKPFFP-----LCDVPRVASKL-LAAAL-LVLLTLINSFSV  154 (479)
T ss_pred             hHH-HHhccchhHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccCC-----CCCCchHHHHH-HHHHH-HHHHHHHhhhhh
Confidence            444 46887665433333333333 3335566666665 444322     22222222222 22222 233344567777


Q ss_pred             HHHHHHHHHHHHH---HHHHHhhhhhccC---ccCCCCcCC-CCCCcchhhhhHHhhhhHHHHHhc-cCchhhhhccccC
Q 020588          165 GVWLGVSTVLSTI---YIVIAIWLSVRDG---LKNPARDYS-IPGTTATKIFESIGACANLVFAFN-TGMLPEIQATIRQ  236 (324)
Q Consensus       165 ~~~S~~~~~~~~~---~~~i~i~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~a~~i~~faf~-h~~~~~i~~~m~~  236 (324)
                      ++.+.+-.+.+..   .+.++++.+++..   ..+ +.+.+ ..++. .+.-++..++-.-.|||. -+.+-.+.+|+||
T Consensus       155 ~~a~~vq~~ft~~Kl~al~lIii~G~~~~~~g~~~-~~~~~~f~g~~-~~~g~i~lafysglfa~~GWd~lN~vteEikn  232 (479)
T KOG1287|consen  155 KWATRVQIVFTIAKLLALLLIIITGLYLLFWGSTQ-NFENSEFEGSD-TDVGNIALAFYSGLFAFSGWDYLNYVTEEIKN  232 (479)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhchheeEecccc-cccccccccCc-CchHHHHHHHHHhhhcccCchhhccchHhhcC
Confidence            7665553332322   2222222233321   111 11111 11211 122235566767788886 5666667789999


Q ss_pred             chhhhHHHHHHHHHHHHHHHHHHHhhHHhhh
Q 020588          237 PVVENMMKALYFQFSVGVLPMFAVTFVGYWA  267 (324)
Q Consensus       237 ps~~~~~~~~~~s~~~~~~~Y~~~g~~gy~~  267 (324)
                      |. |++++++.+|+.++++.|+++-+..+.+
T Consensus       233 P~-ktLP~Ai~isi~lvt~iYil~NvAy~~v  262 (479)
T KOG1287|consen  233 PR-RTLPRAILISIPLVTVIYVLVNVAYFTV  262 (479)
T ss_pred             cc-ccchHHHHHhhHHHHHHHHHhHhheeEe
Confidence            96 7999999999999999999887654433

>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]

Probab=98.65  E-value=3.4e-06  Score=82.28  Aligned_cols=256  Identities=16%  Similarity=0.068  Sum_probs=142.2

Q ss_pred             ecCccccccccceee-hhhhhhhccccccccchhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccccHHH
Q 020588            9 SSYFFHLEMLDSWFQ-VGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRD   87 (324)
Q Consensus         9 ~~~~~~~~~~~s~~~-~~~~l~~~~iG~GiL~LP~a~~~~~G~i~g~i~li~~~~~~~yt~~lL~~~~~~~~~~~~sy~~   87 (324)
                      .+++.+.+|+.+.++ .....++.++|.|++.+|.. ....+ ....+..++.++..........|..... .+.-.+-+
T Consensus         4 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~gif~~~~~-~~~~~-~~~~~~~li~~~~~~~~a~~~~el~~~~-p~~GG~y~   80 (466)
T COG0531           4 SMMSSELKKKLGLFDLLTALGVGSMIGSGIFALPGS-AAGLA-PAAILAWLIAGIIILFLALSYAELSSAI-PSAGGAYA   80 (466)
T ss_pred             cccchhcCCCcchHHHHHHHHHHhhHhhhhHhhhhh-HHHhc-hHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCCCeee
Confidence            345556666777777 66777888999999999988 66664 1122222334444444455555554321 11113455


Q ss_pred             HHHHHhCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccCCCCCCchhhHHHHHHHH-HHHHhcCCCCcchHH
Q 020588           88 LAGHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVC-ALFAIGIPNLSALGV  166 (324)
Q Consensus        88 l~~~~~G~~g~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~i~~~~~-~l~l~~~~~l~~l~~  166 (324)
                      -+++.+||+..+++.....+.......+.....++.+..++....  ........+.++..++. ++...-.+..|..++
T Consensus        81 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ln~~G~~~~~~  158 (466)
T COG0531          81 YAKRALGPRLGFLAGWLYLLAYVIALAAIAIGAASYLSYLFPGPG--LLSIGPLLIILIALALIALLTLLNLRGIKASAK  158 (466)
T ss_pred             ehhhhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcch--hhcCCchHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            678899998888888888887777777777777665555432100  00111111222111111 111222234455555


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhccCccCCCCcCCCCCCcchhhhhHHhhhhHHHHHhc-cCchhhhhccccCchhhhHHHH
Q 020588          167 WLGVSTVLSTIYIVIAIWLSVRDGLKNPARDYSIPGTTATKIFESIGACANLVFAFN-TGMLPEIQATIRQPVVENMMKA  245 (324)
Q Consensus       167 ~S~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~faf~-h~~~~~i~~~m~~ps~~~~~~~  245 (324)
                      ...+..+..+...++..+..+.+...++...................++....++|. .......-+|+|||+ |+.+|+
T Consensus       159 ~~~~~~~~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~knp~-r~ip~a  237 (466)
T COG0531         159 INSIITILKIIILLIFIILGLFAFGFSNGNLFAPFNPGGGSFGGILAAILLAFFAFTGFEAIATLAEEVKNPK-RTIPRA  237 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCccccccCCCcccccchHHHHHHHHHHHHHHhhcHHHHHHHHHHhcCcc-ccccHH
Confidence            555443433333323222223322211100111000011122346677788899996 666777889999985 568999


Q ss_pred             HHHHHHHHHHHHHHHhhHHhhhcCC
Q 020588          246 LYFQFSVGVLPMFAVTFVGYWAYGN  270 (324)
Q Consensus       246 ~~~s~~~~~~~Y~~~g~~gy~~fG~  270 (324)
                      +..+...+..+|......-....++
T Consensus       238 ii~~~~~~~~~y~~~~~~~~~~~~~  262 (466)
T COG0531         238 IILSLLIVLILYILGALVIVGVLPA  262 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCccH
Confidence            9999999999998887766555554

>PRK11357 frlA putative fructoselysine transporter; Provisional

Probab=98.63  E-value=4.4e-06  Score=81.54  Aligned_cols=236  Identities=12%  Similarity=0.080  Sum_probs=128.8

Q ss_pred             ccccccceeehhhhhhhccccccccchhhhhhhccch-hHHHHHHHHHHHHHHHHHHHHHHHhh---hcCcccccHHHHH
Q 020588           14 HLEMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGW-IAGVVGLIIATIVSLNANALIAKLHE---FGGKRHIRYRDLA   89 (324)
Q Consensus        14 ~~~~~~s~~~~~~~l~~~~iG~GiL~LP~a~~~~~G~-i~g~i~li~~~~~~~yt~~lL~~~~~---~~~~~~~sy~~l~   89 (324)
                      +-+|+.+.++.....++.++|+|++..|..+....|- ...++..++.++++...+....|...   +.|. ...|   .
T Consensus         5 ~L~r~l~~~~~~~l~vg~~ig~Gif~~~g~~~~~~G~~~~~~l~~li~~v~~l~~al~~aEl~s~~P~~GG-~y~y---~   80 (445)
T PRK11357          5 ELQRKLGFWAVLAIAVGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLIVIPQMCVYAELSTAYPENGA-DYVY---L   80 (445)
T ss_pred             cccccccHHHHHHHHHHhheechhccchHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC-ceee---H
Confidence            4567889999999999999999999999762344553 23455556667777777777777643   2332 2344   4


Q ss_pred             HHHhCCCcchhHHHHHHH-HHHHHHHHHHHHHHhhHHHHHHHhccCCCCCCchhhHHHHHHHHHHHHhcCCCCcchHHHH
Q 020588           90 GHIYGRRAYALTWGLQYV-NLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWL  168 (324)
Q Consensus        90 ~~~~G~~g~~~v~~~~~~-~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~i~~~~~~l~l~~~~~l~~l~~~S  168 (324)
                      ++.+||...+++...... ........+....++.+...    . +....  ....+....+..+-..-.+..|..+++.
T Consensus        81 ~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~----~-~~~~~--~~~~~~~~~~~~~~~ln~~gv~~~~~v~  153 (445)
T PRK11357         81 KNAGSRPLAFLSGWASFWANDAPSLSIMALAIVSNLGFL----T-PIDPL--LGKFIAAGLIIAFMLLHLRSVEGGAAFQ  153 (445)
T ss_pred             HHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----c-CCchH--HHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence            577999887776665432 22222333444444444321    1 11111  0111111111101111123344444554


Q ss_pred             HHHHHHHHHHHHHHhhhhh--ccCcc-CCCCcCCCCCCcchhhhhHHhhhhHHHHHhc-cCchhhhhccccCchhhhHHH
Q 020588          169 GVSTVLSTIYIVIAIWLSV--RDGLK-NPARDYSIPGTTATKIFESIGACANLVFAFN-TGMLPEIQATIRQPVVENMMK  244 (324)
Q Consensus       169 ~~~~~~~~~~~~i~i~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~i~~faf~-h~~~~~i~~~m~~ps~~~~~~  244 (324)
                      .+..+..+....++++..+  .+... .++.+..  .....++.++..++....|+|. ........+|+|||+ |+.+|
T Consensus       154 ~~~~~~~~~~l~~~ii~g~~~~~~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~-r~iP~  230 (445)
T PRK11357        154 TLITIAKIIPFTIVIGLGIFWFKAENFAAPTTTA--IGATGSFMALLAGISATSWSYTGMASICYMTGEIKNPG-KTMPR  230 (445)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCccccCCCccc--ccccchHHHHHHHHHHHHHHHhhHHHHHhhHHHhcCcc-ccchH
Confidence            4433222221111222221  12111 0010100  0001123456677888899996 777778889999996 68999


Q ss_pred             HHHHHHHHHHHHHHHHhhH
Q 020588          245 ALYFQFSVGVLPMFAVTFV  263 (324)
Q Consensus       245 ~~~~s~~~~~~~Y~~~g~~  263 (324)
                      ++..+..++.++|++....
T Consensus       231 Ai~~~~~i~~~~Y~l~~~~  249 (445)
T PRK11357        231 ALIGSCLLVLVLYTLLALV  249 (445)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            9999999999999886554

>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A

Probab=98.60  E-value=2.8e-06  Score=82.13  Aligned_cols=240  Identities=13%  Similarity=0.078  Sum_probs=137.3

Q ss_pred             ceeehhhhhhhccccccccchhhhhhhccchhHHHHHHHHHHHHH-HHHHHHHHHHhhhcCcccccHHHHHHHHhCCCcc
Q 020588           20 SWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVS-LNANALIAKLHEFGGKRHIRYRDLAGHIYGRRAY   98 (324)
Q Consensus        20 s~~~~~~~l~~~~iG~GiL~LP~a~~~~~G~i~g~i~li~~~~~~-~yt~~lL~~~~~~~~~~~~sy~~l~~~~~G~~g~   98 (324)
                      |+++.....+++++|+|+...| . ..+.|.. .++..++.+.+. ........|......+ .-..-.-+++.+||+.+
T Consensus         2 ~~~~~~~l~~~~~~g~gi~~~~-~-~~~~G~~-~~~~~~i~~~~~~l~~a~~~~el~~~~p~-~GG~y~~~~~~~g~~~g   77 (426)
T PF13520_consen    2 GLFSAIALVIGSIIGSGIFFSP-A-AASAGPS-AILAWIIAALLFFLPIALSYAELSSAYPS-AGGIYVWVSRAFGPFWG   77 (426)
T ss_dssp             -HHHHHHHHHHCHHTTTTTTHH-H-HTCTGCH-HHHHHHHHHHHHHHHHHHHHHHHHTTTTS-STTHHHHHHHHH-HHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHH-H-HHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHhccCCC-cCeeeehhhhcccccch
Confidence            5677788889999999999999 6 7788864 444444444444 4566666665432111 12344667888999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccCCCCCCc-hhhHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHH-
Q 020588           99 ALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKL-PYFIAIAGFVCALFAIGIPNLSALGVWLGVSTVLST-  176 (324)
Q Consensus        99 ~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~-~~~~~i~~~~~~l~l~~~~~l~~l~~~S~~~~~~~~-  176 (324)
                      ++......+.....+.++.....+.+...+..    +...+. ..+.+....++.....-.+..|..++++....+..+ 
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~  153 (426)
T PF13520_consen   78 FIVGWLYWVAYILSLASVASSFASYLLSLFGP----DLNPSPWPQFLIAIILILLFTLLNLLGIKLSGKIQNILTVIKIV  153 (426)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTG----GGTCSHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred             hcccceeEEEeeccccccccchhhhhhhcccc----ccccccchheeeeecccccceEeeechhhhhhhhhhhhhhhhhh
Confidence            99988888777777777776666666544211    101111 111111111111122223345666666655444333 


Q ss_pred             HHHHHHhhhhhccCccCCCC--cCCCCCCcchhhhhHHhhhhHHHHHhc-cCchhhhhccccCchhhhHHHHHHHHHHHH
Q 020588          177 IYIVIAIWLSVRDGLKNPAR--DYSIPGTTATKIFESIGACANLVFAFN-TGMLPEIQATIRQPVVENMMKALYFQFSVG  253 (324)
Q Consensus       177 ~~~~i~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~a~~i~~faf~-h~~~~~i~~~m~~ps~~~~~~~~~~s~~~~  253 (324)
                      ....+.++..+.....+...  +.......+..+...+.+++...|+|. ....+.+.+|+||   |+.+|+...+..++
T Consensus       154 ~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~---k~ip~ai~~~~~~~  230 (426)
T PF13520_consen  154 IPLLVLIILGIVSFSFSGFNSLSFSLSTFFPSGWPGFLAGFSVAFFAFSGFEAIASLAEENKN---KTIPRAIIISIIIV  230 (426)
T ss_dssp             HHHHHHHHHHHHSTTCCHHH----SHSCSSCSSSSHHHHHHHHHGGGGTTTTHHHHGGGGSSS---HHHHHHHHHHHHHH
T ss_pred             hhhhhheeEEEeeecccccccccccccccCCccccchhhHHHHHHhhcccccccccccccccc---hhheeecccchhHH
Confidence            22222222233322111000  000000111122235778888999997 8888888889776   58999999999999


Q ss_pred             HHHHHHHhhHHhhhcCC
Q 020588          254 VLPMFAVTFVGYWAYGN  270 (324)
Q Consensus       254 ~~~Y~~~g~~gy~~fG~  270 (324)
                      .++|.+....-....++
T Consensus       231 ~i~y~l~~~~~~~~~~~  247 (426)
T PF13520_consen  231 AIIYILFSIALLGALPD  247 (426)
T ss_dssp             HHHHHHHHHHHHTTSTH
T ss_pred             HHHHhhhhheeeecccc
Confidence            99999886665555544

...

>PRK10197 gamma-aminobutyrate transporter; Provisional

Probab=98.56  E-value=2.8e-05  Score=76.03  Aligned_cols=223  Identities=13%  Similarity=0.083  Sum_probs=124.6

Q ss_pred             hhhccccccccchhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccccHHHHHHHHhCCCcchhHHHHHHH
Q 020588           28 LTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYGRRAYALTWGLQYV  107 (324)
Q Consensus        28 l~~~~iG~GiL~LP~a~~~~~G~i~g~i~li~~~~~~~yt~~lL~~~~~~~~~~~~sy~~l~~~~~G~~g~~~v~~~~~~  107 (324)
                      -+++++|+|++-.|-.+.++.|- ..++..++.+++....+....|......+. -..-+-+++.+||+..+++.....+
T Consensus         3 ~ig~~IGsGif~~~g~~~~~aG~-~~ll~~~i~gi~~~~~al~~aEL~s~~P~~-Gg~y~y~~~~~G~~~gf~~gw~~~~   80 (446)
T PRK10197          3 SIAGVIGASLFVGSSVAIAEAGP-AVLLAYLFAGLLVVMIMRMLAEMAVATPDT-GSFSTYADKAIGRWAGYTIGWLYWW   80 (446)
T ss_pred             eecchhHhHHHHHhHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-CCHHHHHHHHcChHHHHHHHHHHHH
Confidence            35789999999999853888886 477777888888888888888864422111 1345667789999998888887766


Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHhccCCCCCCchhhHHHHHHHHH-HHHhcCCCCcchHHHHHHHHHHHHHHHHHHhhhh
Q 020588          108 NLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCA-LFAIGIPNLSALGVWLGVSTVLSTIYIVIAIWLS  186 (324)
Q Consensus       108 ~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~i~~~~~~-l~l~~~~~l~~l~~~S~~~~~~~~~~~~i~i~~~  186 (324)
                      .....+.......+..++.    .. +  +.  ..+......+.. ..+.. ...|..+.+..+..+.-+...++.++..
T Consensus        81 ~~~~~~~~~~~~~~~~~~~----~~-~--~~--~~~~~~~~~l~~~~~lN~-~gv~~~~~i~~~~~~~ki~~li~~ii~~  150 (446)
T PRK10197         81 FWVLVIPLEANIAAMILHS----WV-P--GI--PIWLFSLVITLALTGSNL-LSVKNYGEFEFWLALCKVIAILAFIFLG  150 (446)
T ss_pred             HHHHHHHHHHHHHHHHHHh----cc-c--cC--cHHHHHHHHHHHHHHHHH-HhhHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence            5554443333333322221    11 1  11  222222222110 11211 2233333333332221111111111111


Q ss_pred             h--ccC-ccC-CCCcC-CC-C--CCcchhhhhHHhhhhHHHHHhc-cCchhhhhccccCchhhhHHHHHHHHHHHHHHHH
Q 020588          187 V--RDG-LKN-PARDY-SI-P--GTTATKIFESIGACANLVFAFN-TGMLPEIQATIRQPVVENMMKALYFQFSVGVLPM  257 (324)
Q Consensus       187 ~--~~~-~~~-~~~~~-~~-~--~~~~~~~~~~~~a~~i~~faf~-h~~~~~i~~~m~~ps~~~~~~~~~~s~~~~~~~Y  257 (324)
                      +  ..+ ... +.... +. +  +..+..+.++..++....|+|. .......-+|+|||+ |+++|++..+.....++|
T Consensus       151 ~~~~~g~~~~~~~~~~~~~~~~~~~~p~g~~~~~~a~~~~~faf~G~e~~~~~a~E~knP~-r~iPrai~~~~~~i~i~Y  229 (446)
T PRK10197        151 AVAISGFYPYAEVSGISRLWDSGGFMPNGFGAVLSAMLITMFSFMGAEIVTIAAAESDTPE-KHIVRATNSVIWRISIFY  229 (446)
T ss_pred             HHHhcCCCCCCCCCcchhcCCCCCCCcccHHHHHHHHHHHHHHHhCHHHHHHHHHHhcChh-hhHHHHHHHHHHHHHHHH
Confidence            1  111 110 00000 00 0  1112234467788889999996 777777888999996 689999998888899999


Q ss_pred             HHHhhH
Q 020588          258 FAVTFV  263 (324)
Q Consensus       258 ~~~g~~  263 (324)
                      +.....
T Consensus       230 il~~~~  235 (446)
T PRK10197        230 LCSIFV  235 (446)
T ss_pred             HHHHHH
Confidence            886554

>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]

Probab=98.40  E-value=4.1e-05  Score=73.23  Aligned_cols=243  Identities=16%  Similarity=0.162  Sum_probs=143.6

Q ss_pred             cccccccceeehhhhhhhcccccc-ccchhhhhhhccchhHHH-HHHHHHHHHHHHHHHHHHHHhhhcCcccccHHHHHH
Q 020588           13 FHLEMLDSWFQVGFVLTTGINSAY-VLGYPGTVMVPLGWIAGV-VGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAG   90 (324)
Q Consensus        13 ~~~~~~~s~~~~~~~l~~~~iG~G-iL~LP~a~~~~~G~i~g~-i~li~~~~~~~yt~~lL~~~~~~~~~~~~sy~~l~~   90 (324)
                      .+-+|+.+.++--+.=++..||+| .++--.+ .+..|  |++ +.-+++|++...-+..|.|...++.. .-|+.+.++
T Consensus         9 ~~l~rgL~~RHIqlIAiGGaIGtGLFlGSg~~-I~~AG--PSvlLaY~I~G~~~f~iMRaLGEm~~~~p~-~gSF~~~a~   84 (462)
T COG1113           9 QGLKRGLKNRHIQLIAIGGAIGTGLFLGSGSA-IAMAG--PSVLLAYLIAGIFVFLIMRALGEMLVANPV-SGSFSDYAR   84 (462)
T ss_pred             hhhhhhhHHHHHHHHHHhhhhhhhhhcccchh-hhhhC--cHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCcHHHHHH
Confidence            335577889998899999999999 5677777 88888  443 34456788888888888887543222 248999999


Q ss_pred             HHhCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccCCCCCCchhhHHHHHHHHH-HH--HhcCCCCcchH-H
Q 020588           91 HIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCA-LF--AIGIPNLSALG-V  166 (324)
Q Consensus        91 ~~~G~~g~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~i~~~~~~-l~--l~~~~~l~~l~-~  166 (324)
                      +.+||+..++++-.-...-.-.+++-+...+..++     +|-++.    ..|+.....+.+ ..  +...|.+.++. |
T Consensus        85 ~~lG~~Agf~tgW~YW~~wv~v~~ae~tAi~~y~~-----~WfP~v----P~Wv~al~~~~l~~~~NL~sVk~FGE~EfW  155 (462)
T COG1113          85 KYLGPWAGFLTGWTYWFFWVLVGIAELTAIGIYLQ-----FWFPDV----PQWVFALAAVVLLLAVNLISVKVFGELEFW  155 (462)
T ss_pred             HHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhcCCC----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999888888777777777777777666665     333332    455433332220 11  22223444444 3


Q ss_pred             HHHHHHHHHHHHHHHHhhhh-hccCccCCC--CcCC-C---CCCcchhhhhHHhhhhHHHHHhc-cCchhhhhccccCch
Q 020588          167 WLGVSTVLSTIYIVIAIWLS-VRDGLKNPA--RDYS-I---PGTTATKIFESIGACANLVFAFN-TGMLPEIQATIRQPV  238 (324)
Q Consensus       167 ~S~~~~~~~~~~~~i~i~~~-~~~~~~~~~--~~~~-~---~~~~~~~~~~~~~a~~i~~faf~-h~~~~~i~~~m~~ps  238 (324)
                      ++.+=++..+.  .|++++. +..+...++  ...+ +   .+.-+..+.+++.++-+.+|||+ ...+-.--.|-|||+
T Consensus       156 fAlIKV~aIi~--~Iv~G~~ll~~g~~~~~~~~g~snl~~hGGffP~G~~g~~~~~~~v~Faf~GiElvGitA~Et~dP~  233 (462)
T COG1113         156 FALIKVAAIIA--FIVVGIVLLFGGFGGGGGAAGFSNLWDHGGFFPNGFLGFLSALQIVMFAFGGIELVGITAAEAKDPE  233 (462)
T ss_pred             HHHHHHHHHHH--HHHHHHHHHhhccCCCCCCccccccccCCCcCCCchHHHHHHHHHHHHHHhhHHHHHHHHHhhcChh
Confidence            34431111111  1222221 111211111  1111 1   12234566788999999999997 665555667899996


Q ss_pred             hhhHHHHHHHHHHHHHHHH-----HHHhhHHhhhcCCC
Q 020588          239 VENMMKALYFQFSVGVLPM-----FAVTFVGYWAYGNS  271 (324)
Q Consensus       239 ~~~~~~~~~~s~~~~~~~Y-----~~~g~~gy~~fG~~  271 (324)
                       |..+|++.--..=..++|     +...+.-+-.++++
T Consensus       234 -k~ipkAin~V~~RI~iFYvgsl~vi~~l~PW~~~~~~  270 (462)
T COG1113         234 -KAIPKAINSVIWRILIFYVGSLFVILSLYPWNQIGED  270 (462)
T ss_pred             -hHHHHHHhhhhHHHHHHHHHHHHHHheeccccccCCC
Confidence             466676653322233333     34455555544443

>TIGR03428 ureacarb_perm permease, urea carboxylase system

Probab=98.20  E-value=0.00053  Score=67.58  Aligned_cols=249  Identities=9%  Similarity=-0.066  Sum_probs=122.7

Q ss_pred             cccccceeehhhhhhhc-cccccccchhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccccHHHHHHHHh
Q 020588           15 LEMLDSWFQVGFVLTTG-INSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIY   93 (324)
Q Consensus        15 ~~~~~s~~~~~~~l~~~-~iG~GiL~LP~a~~~~~G~i~g~i~li~~~~~~~yt~~lL~~~~~~~~~~~~sy~~l~~~~~   93 (324)
                      -+|+-+.++....-.+. .+|+|+.++|..+....|- ..+...++.++.......-+.|......+.--.| .-+++.+
T Consensus        11 L~R~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~Gp-~~~~~~li~~i~~l~~als~aEL~s~~P~aGG~Y-~~~~~~~   88 (475)
T TIGR03428        11 LHRKLGRYASFAAGFSFVSILTTIFQLFGFGYGFGGP-AFFWTWPVVFVGQLLVALNFAELAARYPISGAIY-QWSRRMG   88 (475)
T ss_pred             cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHH-HHHHHHc
Confidence            44667777776555554 4788988888763556664 3455556666666677777777643211111123 3356789


Q ss_pred             CCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH---hc-cCCCC-CCc--hhhHHHHHHHHHHHHhcCCCCcchHH
Q 020588           94 GRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVL---FW-KDDHT-MKL--PYFIAIAGFVCALFAIGIPNLSALGV  166 (324)
Q Consensus        94 G~~g~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~---~~-~~~~~-~~~--~~~~~i~~~~~~l~l~~~~~l~~l~~  166 (324)
                      ||+..+++.....+.......+.....+..+..+...   +. +++.. ...  ..+.+...++...-..-....|..++
T Consensus        89 g~~~gf~~gW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~g~k~~~~  168 (475)
T TIGR03428        89 GEVIGWFAGWFMIIAQIVTAAAAAIALQVVLPNIWSGFQIIGEDPTLTSPSGAANAVLLGSVLLVLTTVINCIGVEWMSR  168 (475)
T ss_pred             CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCccccCCCchHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence            9998888887777665543333333333333322111   11 01110 011  11222111111011111223455555


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhccCccCCCCcCC--CCCCcchhhhhHHhhhhHHHHHhc-cCchhhhhccccCchhhhHH
Q 020588          167 WLGVSTVLSTIYIVIAIWLSVRDGLKNPARDYS--IPGTTATKIFESIGACANLVFAFN-TGMLPEIQATIRQPVVENMM  243 (324)
Q Consensus       167 ~S~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~a~~i~~faf~-h~~~~~i~~~m~~ps~~~~~  243 (324)
                      +..+..+..+...+++++....+...++....+  ..+..+.....+..+.....|+|. .......-+|+|||+ |+.+
T Consensus       169 i~~~~~~~~i~~l~~iii~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~aeE~knP~-r~iP  247 (475)
T TIGR03428       169 VNTIGVTCEIVGVLAVIGVLFTHAQRGPGVVFDTSVTGASPGYYGAFLVSGLMAAYVMVGFGSAGELSEETKNPR-RVAP  247 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCcceeeecCCCCCCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhcCcc-hhhh
Confidence            544433322221111111112211111110010  001111112234445556678886 777777889999996 6899


Q ss_pred             HHHHHHHHHHHHHHHHHhhHHhh
Q 020588          244 KALYFQFSVGVLPMFAVTFVGYW  266 (324)
Q Consensus       244 ~~~~~s~~~~~~~Y~~~g~~gy~  266 (324)
                      |++..+..+....|...-+....
T Consensus       248 rai~~s~~i~~~~~~~~~~~~~~  270 (475)
T TIGR03428       248 RTILTALSVSALGGGLMILGALM  270 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999988877766554443333

A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.

>TIGR00800 ncs1 NCS1 nucleoside transporter family

Probab=98.05  E-value=0.0011  Score=64.62  Aligned_cols=185  Identities=11%  Similarity=0.042  Sum_probs=99.9

Q ss_pred             ccHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccCCCCCC----ch--hhHHHHHHHHHHHHh
Q 020588           83 IRYRDLAGHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMK----LP--YFIAIAGFVCALFAI  156 (324)
Q Consensus        83 ~sy~~l~~~~~G~~g~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~----~~--~~~~i~~~~~~l~l~  156 (324)
                      .++.-+.|..||++|.++..+...+..+|-...-....++.+..+++...+...+..    ..  ...+++..+. ++..
T Consensus        76 l~~~v~sR~~FG~~Gs~~~~~~~~i~~igW~av~~~~~g~al~~~l~~i~~~~~~~~~~~t~~~~~~~~i~~~l~-~~~~  154 (442)
T TIGR00800        76 LPFPVLSRASFGIYGSLLPSLLRIVMAIGWYGVQAWVGGLCVALMLDSIFPGYLHLGNGMTTLELICFIIFWALV-LVFL  154 (442)
T ss_pred             CCcchhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcccccccCCcccHHHHHHHHHHHHHH-HHHH
Confidence            467889999999999999999999999999999999999999888777543211111    11  2222333333 3433


Q ss_pred             cCCCCcchHHHHHHHHHHHHHHHHHHhhhhhc-cCccCCCCcCCCCCCcchhhhhHHhhhhHHHHHh-c--cCchhhhhc
Q 020588          157 GIPNLSALGVWLGVSTVLSTIYIVIAIWLSVR-DGLKNPARDYSIPGTTATKIFESIGACANLVFAF-N--TGMLPEIQA  232 (324)
Q Consensus       157 ~~~~l~~l~~~S~~~~~~~~~~~~i~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~faf-~--h~~~~~i~~  232 (324)
                      .+.-.|-+++....+.........+.+..... ++..+ ..+......+......+..++.. ..++ .  -...++..+
T Consensus       155 ~~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~f~~~~~~-~~g~~~s~~~~~~DysR  232 (442)
T TIGR00800       155 FFFGYKIRHLFEWLAVVPPFAAFGMLIWALSKAHGKGP-LGELTGTLHGSTGAWAFLYALSL-VIGSFATWATNAPDFTR  232 (442)
T ss_pred             HcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCc-cccCCCCCCcchhHHHHHHHHHH-HHHHHHHHHcCchhhhh
Confidence            33323333334443332221111111111111 11110 00000000112233445555555 3344 2  478899999


Q ss_pred             cccCchhhhHHHHHHHHHHHHHHHHHHHhhHHhhh----cCCCc
Q 020588          233 TIRQPVVENMMKALYFQFSVGVLPMFAVTFVGYWA----YGNSS  272 (324)
Q Consensus       233 ~m~~ps~~~~~~~~~~s~~~~~~~Y~~~g~~gy~~----fG~~~  272 (324)
                      .+|+|  ++-.+...++..........+|+.+-..    +|+..
T Consensus       233 y~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~a~~~~~~~g~~~  274 (442)
T TIGR00800       233 FGKSK--KTAIWGQFLALPGGFTLTCFFGILGAAAAYAAYGEPY  274 (442)
T ss_pred             hcCCc--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence            99987  3334445556666666666666666554    77553

The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.

>KOG3832 consensus Predicted amino acid transporter [General function prediction only]

Probab=98.03  E-value=9.9e-05  Score=63.27  Aligned_cols=103  Identities=12%  Similarity=0.133  Sum_probs=75.0

Q ss_pred             hhhhhhhccccccccchhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhh---------h-cC----ccc-------
Q 020588           24 VGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHE---------F-GG----KRH-------   82 (324)
Q Consensus        24 ~~~~l~~~~iG~GiL~LP~a~~~~~G~i~g~i~li~~~~~~~yt~~lL~~~~~---------~-~~----~~~-------   82 (324)
                      ...-..|-++|.|.|+||.| |+..||..++.++.+.++++.-+....+|+..         + .+    +++       
T Consensus        17 gllymfnlivgtgalalpka-fatagwllsi~ll~fl~fmsfmaatfviealaaanaqlhwkrle~~keeeddd~stasd   95 (319)
T KOG3832|consen   17 GLLYMFNLIVGTGALALPKA-FATAGWLLSITLLTFLAFMSFMAATFVIEALAAANAQLHWKRLEKKKEEEDDDESTASD   95 (319)
T ss_pred             hHhhhhhhhhccccccchHh-HhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhccccccccCC
Confidence            34456778899999999999 99999999999999999999999888888631         0 00    000       


Q ss_pred             ----------------------------------ccHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 020588           83 ----------------------------------IRYRDLAGHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAA  127 (324)
Q Consensus        83 ----------------------------------~sy~~l~~~~~G~~g~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i  127 (324)
                                                        ....+++..-|.+.+-.+..++++++++|-...|--..-.+.-++
T Consensus        96 ~dvli~d~yeraekrpilsvqrrgspnpfeisdkvemgemasmffnkvgln~fyf~iiiylfgdlaiyaaavpfs~m~i  174 (319)
T KOG3832|consen   96 DDVLIADGYERAEKRPILSVQRRGSPNPFEISDKVEMGEMASMFFNKVGLNFFYFAIIIYLFGDLAIYAAAVPFSAMNI  174 (319)
T ss_pred             CcEEEecCchhcccCCcceecccCCCCcceeehhhhHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhhcCchHhhhh
Confidence                                              123445555566777777888888888888888865554444444

>PRK15238 inner membrane transporter YjeM; Provisional

Probab=98.00  E-value=0.0012  Score=65.45  Aligned_cols=242  Identities=9%  Similarity=0.072  Sum_probs=114.6

Q ss_pred             cccccceeehhhhhhhccccccccchhhhhhhccchhHHHHHHHHHHHHH-HHHHHHHHHHhhh-cCcccccHHHHHHHH
Q 020588           15 LEMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVS-LNANALIAKLHEF-GGKRHIRYRDLAGHI   92 (324)
Q Consensus        15 ~~~~~s~~~~~~~l~~~~iG~GiL~LP~a~~~~~G~i~g~i~li~~~~~~-~yt~~lL~~~~~~-~~~~~~sy~~l~~~~   92 (324)
                      .+||.|+++..+..+++++|.+  .+|.+ .+..|.. +++..++.+.+. ........|.... ++..--.| .-.+++
T Consensus         5 ~~~~l~~~~l~~~~~~~vig~~--~~~~~-~~~~G~~-~i~~~~i~~~~~~l~~al~~aEL~s~~P~~aGG~Y-~w~~~~   79 (496)
T PRK15238          5 TKKKLSLIGLILMIFTSVFGFA--NSPRA-FYLMGYS-AIPWYILSAILFFIPFALMMAEYGSAFKDEKGGIY-SWMNKS   79 (496)
T ss_pred             ccCeeeHHHHHHHHHHHHHhCC--chHHH-HHHcChH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHH-HHHHHH
Confidence            4677899999888889999976  56888 8888863 444444444443 3345556665332 11001123 346678


Q ss_pred             hCCCcchhHHHHHHHHHHHHHHHHHHHHHhhH-HHHHHHhccCC---CCCCchhhHHHHHHHH--HHHHhcCCCCcchHH
Q 020588           93 YGRRAYALTWGLQYVNLFMINTGYIILAGQAL-KAAFVLFWKDD---HTMKLPYFIAIAGFVC--ALFAIGIPNLSALGV  166 (324)
Q Consensus        93 ~G~~g~~~v~~~~~~~~~g~~i~y~i~~~~~l-~~i~~~~~~~~---~~~~~~~~~~i~~~~~--~l~l~~~~~l~~l~~  166 (324)
                      +||+.++++..............-........ ..++.....+.   .+.+......+.+.+.  ..-..-.+.+|..++
T Consensus        80 ~G~~~gf~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~t~vn~~g~~~~~~  159 (496)
T PRK15238         80 VGPKFAFIGTFMWFASYIIWMVSTASKIWIPFSTFIFGKDTTQTWHFLGLNSTQVVGILAVIWMILVTFVASKGINKIAK  159 (496)
T ss_pred             cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhhhhhhcccchHHHHHHHHHHHHHHHHHHccchHHHHH
Confidence            99988876554332222211111000000000 00000000000   0111111111112111  011222345555555


Q ss_pred             HHHHHHHHHHH----HHHHHhhhhhccC-ccCCCCcC-CCCC--Cc-chhhhhHHhhhhHHHHHhc-cCchhhhhccccC
Q 020588          167 WLGVSTVLSTI----YIVIAIWLSVRDG-LKNPARDY-SIPG--TT-ATKIFESIGACANLVFAFN-TGMLPEIQATIRQ  236 (324)
Q Consensus       167 ~S~~~~~~~~~----~~~i~i~~~~~~~-~~~~~~~~-~~~~--~~-~~~~~~~~~a~~i~~faf~-h~~~~~i~~~m~~  236 (324)
                      ++.++....+.    ..++..+.....+ ..+.+.+. +...  .+ .....+...++....|+|. .......-+|+||
T Consensus       160 i~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~~~  239 (496)
T PRK15238        160 VTSIGGIAVMLLNIVLLLVSIIILILNGGHFAQPIGVSSFVTSPNPAYQSPIAVLSFVVFAIFAYGGIEAVGGLVDKTEN  239 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccHhhcccCCCCccccchHHHHHHHHHHHHHHhHHHHHHHHHhccC
Confidence            55443222111    1111111111111 11001110 0000  00 1111345556677889996 7777778899999


Q ss_pred             chhhhHHHHHHHHHHHHHHHHHHHhh
Q 020588          237 PVVENMMKALYFQFSVGVLPMFAVTF  262 (324)
Q Consensus       237 ps~~~~~~~~~~s~~~~~~~Y~~~g~  262 (324)
                      |+ |+.+|+...+...+..+|++...
T Consensus       240 p~-~~~p~ai~~~~~~~~~~y~l~~~  264 (496)
T PRK15238        240 PE-KNFPKGIIIAAIVISIGYSLAIF  264 (496)
T ss_pred             CC-ccccHHHHHHHHHHHHHHHHHHH
Confidence            96 68999999999999999987543

>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=97.85  E-value=0.00016  Score=71.18  Aligned_cols=234  Identities=13%  Similarity=0.022  Sum_probs=126.5

Q ss_pred             hhhcccccc-ccchhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccccHHHHHHHHhCCCcchhHHHHHH
Q 020588           28 LTTGINSAY-VLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYGRRAYALTWGLQY  106 (324)
Q Consensus        28 l~~~~iG~G-iL~LP~a~~~~~G~i~g~i~li~~~~~~~yt~~lL~~~~~~~~~~~~sy~~l~~~~~G~~g~~~v~~~~~  106 (324)
                      -+.+++|+| .++.+.+ ..+.|....++..++.+++...++.-+.|..++..+ .-++-..+++.+||.....+...-.
T Consensus         6 ~ig~~ig~g~f~~~g~~-~~~~G~~~~~la~li~~i~~~~~~~~~~ems~~~p~-~Gg~y~y~~~~lg~~~Gf~~gw~y~   83 (478)
T PF00324_consen    6 SIGGIIGTGLFLGSGFA-IAAAGPGGAPLAYLIAGIIVLLVALSLAEMSRRFPS-AGGFYAYASRGLGPALGFAAGWAYW   83 (478)
T ss_pred             eHHHHHHHHHHHHHHHH-HHhcccccchhHhHHHHHHHHhhhhhhhhhhhhhcc-ccchhhhhhhccCCcCCceeeHHHH
Confidence            356678877 4566777 889998777787888888888888888887553222 2245566778999988877777755


Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHhccCCCCCCchhh----HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHH
Q 020588          107 VNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYF----IAIAGFVCALFAIGIPNLSALGVWLGVSTVLSTIYIVIA  182 (324)
Q Consensus       107 ~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~----~~i~~~~~~l~l~~~~~l~~l~~~S~~~~~~~~~~~~i~  182 (324)
                      ....-.........+..++.. +.+  ++.. +...|    ..++..++ ..+... ..|.-+.....-...-+......
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~-~~~~~~~~~~~i~~~~~-~~l~~~-gv~~~~~~~~~~~~i~~~~li~~  157 (478)
T PF00324_consen   84 LSYIAAIAAEATAAGSFLQFW-GYF--PGLP-STWVWGILIAIIFILLI-TLLNLF-GVRVSGKIEFILTIIKLIALIAF  157 (478)
T ss_pred             HHHHHHHHhhhhhhhhhhccc-ccc--cccc-ccccccchhhhhhhhhh-hhhhhh-hhhccchHHHHHHHHhhhHhhhh
Confidence            444444444444444333322 101  1111 11222    22222222 122221 22333332222111111111111


Q ss_pred             hhhh-h---ccCccCCC--CcCC------CCC----CcchhhhhHHhhhhHHHHHhc-cCchhhhhccccCchhhhHHHH
Q 020588          183 IWLS-V---RDGLKNPA--RDYS------IPG----TTATKIFESIGACANLVFAFN-TGMLPEIQATIRQPVVENMMKA  245 (324)
Q Consensus       183 i~~~-~---~~~~~~~~--~~~~------~~~----~~~~~~~~~~~a~~i~~faf~-h~~~~~i~~~m~~ps~~~~~~~  245 (324)
                      ++.. +   ....+.+.  ...+      .++    ....++.+++.++....++|. .......-+|.|||+ |+++|+
T Consensus       158 ii~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~a~~a~E~k~P~-k~IPra  236 (478)
T PF00324_consen  158 IIVGVIILFFGGGPSNGRYWGDPGSFANNFPPGFTDPSGGGFSGFFAALVFAFFAFVGFESIAILAEEAKNPR-KTIPRA  236 (478)
T ss_pred             hhhcccccccccCCCcccccccccccccccccccccccccchhHHHHhhhhhhcccccccccccccccCCCch-hhhhhH
Confidence            1111 1   11111111  0000      100    001135668888999999996 777777888999996 689999


Q ss_pred             HHHHHHHHHHHHHHHhhHHhhhcCC
Q 020588          246 LYFQFSVGVLPMFAVTFVGYWAYGN  270 (324)
Q Consensus       246 ~~~s~~~~~~~Y~~~g~~gy~~fG~  270 (324)
                      ...+.....++|+......-...+.
T Consensus       237 ~~~~~~~~~v~y~~~~~~~~~~~~~  261 (478)
T PF00324_consen  237 TLLSVLRIGVFYVLTSYALTLAVPY  261 (478)
T ss_pred             hhhhhhhhhhhhhhhhhhcccccCc
Confidence            9999999999998876654444443

A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane

>TIGR00907 2A0304 amino acid permease (GABA permease)

Probab=97.79  E-value=0.0047  Score=60.88  Aligned_cols=242  Identities=12%  Similarity=-0.029  Sum_probs=113.4

Q ss_pred             ccccccccceeehhhhhhhcccc--cccc-chhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccccHHHH
Q 020588           12 FFHLEMLDSWFQVGFVLTTGINS--AYVL-GYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDL   88 (324)
Q Consensus        12 ~~~~~~~~s~~~~~~~l~~~~iG--~GiL-~LP~a~~~~~G~i~g~i~li~~~~~~~yt~~lL~~~~~~~~~~~~sy~~l   88 (324)
                      +.+-+|+.+.++....-.. .+|  +|+. +.+.+ ..+.|-...++..++.+++....+.-+.|......+. -+.-.-
T Consensus         7 ~~~l~r~l~~~~~~~~~~~-~~~~~~g~~~~~~~~-~~~~Gp~~~i~~~~i~gi~~l~~~~~~aEl~s~~P~~-Gg~y~~   83 (482)
T TIGR00907         7 KPELKREFSLWSIFGFAFS-ISNSWTGISTTYNYG-LSSGGAMSIVWGWIIAGAGSICIALSLAELSSAYPTS-GGQYFW   83 (482)
T ss_pred             cceeecccchhHHHHHHHH-HHHHHHHHHHHHHHh-hhcCCccchhHHHHHHHHHHHHHHHHHHHHHhhCCCC-ccHHHH
Confidence            3345566777776544444 444  4543 34445 6677754445666777778888888888864321111 122333


Q ss_pred             HHHHhC----CCcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccCCCCC--Cchh-hHHHHHHHHH-HHHhcCCC
Q 020588           89 AGHIYG----RRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTM--KLPY-FIAIAGFVCA-LFAIGIPN  160 (324)
Q Consensus        89 ~~~~~G----~~g~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~--~~~~-~~~i~~~~~~-l~l~~~~~  160 (324)
                      +++++|    +...+++.....+.....+.+.....++.+..+....+ +++..  +... ..+..+.... ..+.. ..
T Consensus        84 ~~~~~g~~~g~~~~f~~gW~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~in~-~g  161 (482)
T TIGR00907        84 SAKLAPPRQMPFASWMTGWFNLAGQVAGTASTDLSVAQLILGIVSLTT-PGREYIPTRWHIFGIMIGIHLIHALINS-LP  161 (482)
T ss_pred             HHHhcccccccceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCCccccCchhhhhHHHHHHHHHHHHH-hh
Confidence            455665    44456666655555555555555555555554432221 11111  1111 1111111110 11111 12


Q ss_pred             CcchHHHHHHHHHHHHHHHHHHhhhhhccCccC-CCCcCC---C-CCC---cchhhhhHHhhhhHHHHHhc-cCchhhhh
Q 020588          161 LSALGVWLGVSTVLSTIYIVIAIWLSVRDGLKN-PARDYS---I-PGT---TATKIFESIGACANLVFAFN-TGMLPEIQ  231 (324)
Q Consensus       161 l~~l~~~S~~~~~~~~~~~~i~i~~~~~~~~~~-~~~~~~---~-~~~---~~~~~~~~~~a~~i~~faf~-h~~~~~i~  231 (324)
                      .|..++...+..+..+....++++..+.....+ ++.+..   . +..   .+.. +....++....|+|. .......-
T Consensus       162 ~k~~~~~~~~~~~~~i~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~g-~~~~~~~~~~~fsf~G~e~~~~~a  240 (482)
T TIGR00907       162 TKWLPRITSSAAYWSLLGFLTICITLLACKSPKFNDGKFVFTNFNNSTGGWKPGG-FAFLLGLLNPAWSMTGYDGTAHMA  240 (482)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhhhheeeeCCCCCcCCCc-hhhhhhhhhhHHHhcCcchhhHHH
Confidence            233333333322222111111111111111100 011110   0 000   1111 234445555679996 77777788


Q ss_pred             ccccCchhhhHHHHHHHHHHHHHHHHHHH
Q 020588          232 ATIRQPVVENMMKALYFQFSVGVLPMFAV  260 (324)
Q Consensus       232 ~~m~~ps~~~~~~~~~~s~~~~~~~Y~~~  260 (324)
                      +|+|||+ |+++|++..+..+..++++..
T Consensus       241 ~E~knP~-r~iP~Ai~~s~~i~~~~~~~~  268 (482)
T TIGR00907       241 EEIENPE-VVGPRAIIGAVAIGIVTGFCF  268 (482)
T ss_pred             HhcCChh-hhcCHHHHHHHHHHHHHHHHH
Confidence            9999995 689999998887766554433

>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter

Probab=97.71  E-value=0.0018  Score=64.48  Aligned_cols=47  Identities=6%  Similarity=-0.019  Sum_probs=36.3

Q ss_pred             hhhHHHHHhc-cCchhhhhccccCchhhhHHHHHHHHHHHHHHHHHHHh
Q 020588          214 ACANLVFAFN-TGMLPEIQATIRQPVVENMMKALYFQFSVGVLPMFAVT  261 (324)
Q Consensus       214 a~~i~~faf~-h~~~~~i~~~m~~ps~~~~~~~~~~s~~~~~~~Y~~~g  261 (324)
                      .+..+.|+|. .......-+|+|||+ |+++|++..+..++.++|.+..
T Consensus       199 ~~~~~~faf~G~E~~a~~a~E~knP~-r~~PrAi~~~~i~~~~l~~l~~  246 (507)
T TIGR00910       199 VFVAFIGAYMGVEASASHINELENPG-RDYPLAMILLMIAAICLDAIGG  246 (507)
T ss_pred             HHHHHHHHHhcHHHHHHHHHHccCCc-ccccHHHHHHHHHHHHHHHHHH
Confidence            3344578886 666667778999995 6899999999988888886533

Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009

>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]

Probab=97.67  E-value=0.00086  Score=66.98  Aligned_cols=247  Identities=14%  Similarity=0.085  Sum_probs=134.9

Q ss_pred             ccccccceeehhhhhhhccccccccchhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhh-hcCcccccHHHHHHHH
Q 020588           14 HLEMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHE-FGGKRHIRYRDLAGHI   92 (324)
Q Consensus        14 ~~~~~~s~~~~~~~l~~~~iG~GiL~LP~a~~~~~G~i~g~i~li~~~~~~~yt~~lL~~~~~-~~~~~~~sy~~l~~~~   92 (324)
                      +-+|+.+++.-.+.=+++++|+|+.-.-..+.++.|=..-++-.++.+.....++.-+.|..- .+.. .-++-..+++.
T Consensus        27 ~lkR~L~~rhl~miaiGg~IGtGl~V~sG~~l~~~gp~s~iisf~i~g~~~~~~~~~~~E~~~~~P~~-aGs~~~ya~~~  105 (554)
T KOG1286|consen   27 ELKRCLKTRHLQMLAIGGTIGTGLFVGTGSALRNGGPPSLLISFIIAGIAALLSALCLGEFAVRFPVS-AGSFYTYAYRF  105 (554)
T ss_pred             hhhccCCcccEEEEEecceeccceEEeccHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHheecccc-cccceeeeeee
Confidence            445677888888888999999996544433378888666666667777777777777888533 2321 01234446667


Q ss_pred             hCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHH--HHhccCCCCCCchhhHHH-HHHHHHHHHhcCCCCcchHHHHH
Q 020588           93 YGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAF--VLFWKDDHTMKLPYFIAI-AGFVCALFAIGIPNLSALGVWLG  169 (324)
Q Consensus        93 ~G~~g~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~--~~~~~~~~~~~~~~~~~i-~~~~~~l~l~~~~~l~~l~~~S~  169 (324)
                      .|+.....+.....+.-+-.+-+-....+..++...  +.......+.+...|... +++++++.+...+-.-..+..+.
T Consensus       106 i~e~~aF~~gWny~l~y~i~~a~e~~a~s~~~~~w~~~~~~~~~~~~~~~~~~~~~fla~~v~in~~gv~~~ge~ef~~~  185 (554)
T KOG1286|consen  106 VGESLAFAIGWNYLLEYVIGLAAEARAWSSYLDYWTGASLIGILVDTVNPGGWIPDFLAFILIINLFGVLAYGEVEFSLA  185 (554)
T ss_pred             eCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhccccccccccCCCCCccHHHHHHHHHHHHHHHHhhccceeehHH
Confidence            777777666666655555555555555555554432  000000012222333332 22222122222333233343333


Q ss_pred             HHHHHHH-HHHHHHhhhhhccCccCCCCcCC------CCC-CcchhhhhHHhhhhHHHHHhc-cCchhhhhccccCchhh
Q 020588          170 VSTVLST-IYIVIAIWLSVRDGLKNPARDYS------IPG-TTATKIFESIGACANLVFAFN-TGMLPEIQATIRQPVVE  240 (324)
Q Consensus       170 ~~~~~~~-~~~~i~i~~~~~~~~~~~~~~~~------~~~-~~~~~~~~~~~a~~i~~faf~-h~~~~~i~~~m~~ps~~  240 (324)
                      +..+..+ -+.++.+++ ...+.+.++.++.      .++ ..+..+.++..+..+..|+|. ...+-..-.|-|||+ |
T Consensus       186 ~~kvl~~v~~~Il~iVi-~~G~~~~d~~~~ig~~y~~~~g~F~p~gf~Gv~s~~~~~~fsf~G~e~va~~a~E~kNP~-k  263 (554)
T KOG1286|consen  186 FNKILTAVGFIILAIVI-IAGGGPADVKNWIGFRYWHDPGAFFPFGFKGVLSGAATAFFSFIGFELVATTAEEAKNPR-K  263 (554)
T ss_pred             HHHHHHHHHHHHhheee-ecCCCcCCcCCCcCccccCCCCCcCCCCcceeeHHHHHHHHHHhhHHHHHHHHHhccCCc-c
Confidence            3222111 111111111 1111111111111      011 112235567788888999996 655555667889996 6


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhH
Q 020588          241 NMMKALYFQFSVGVLPMFAVTFV  263 (324)
Q Consensus       241 ~~~~~~~~s~~~~~~~Y~~~g~~  263 (324)
                      ..++++..++..++.+|+...+.
T Consensus       264 ~IP~ai~~s~~ri~~~Yi~~~~~  286 (554)
T KOG1286|consen  264 AIPKAIKQSLLRILLFYILSSIV  286 (554)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHH
Confidence            89999999999999999887654

>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]

Probab=97.63  E-value=0.0086  Score=58.82  Aligned_cols=233  Identities=12%  Similarity=0.077  Sum_probs=135.7

Q ss_pred             ccccceeehhhhhhhcccccc-ccchhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccccHHHHHHHHhC
Q 020588           16 EMLDSWFQVGFVLTTGINSAY-VLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYG   94 (324)
Q Consensus        16 ~~~~s~~~~~~~l~~~~iG~G-iL~LP~a~~~~~G~i~g~i~li~~~~~~~yt~~lL~~~~~~~~~~~~sy~~l~~~~~G   94 (324)
                      +|+...+.-.+.-++..||+| .++.-.+ .++.|=...++..+++|.+..+++.-|.|.+..... .-++.+.+.+..+
T Consensus        43 kR~LK~RHl~MIAiGG~IGTGLfvgsG~~-l~~aGP~g~li~y~i~G~~vy~vm~sLGEma~~~P~-sGsF~~ya~rfvd  120 (541)
T COG0833          43 KRSLKSRHLQMIAIGGAIGTGLFVGSGKA-LSQAGPAGLLIAYLIIGIMVYFVMQSLGELAVFYPV-SGSFSTYATRFVD  120 (541)
T ss_pred             hhhhhHHHHHHHHhccccccceeeecchh-hhccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CCchhhhhhhhcC
Confidence            356667777788899999999 5788888 999998888888888999999999999997543222 1258888888888


Q ss_pred             CCcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccCCCCCCchhhHHHHHHHHHHHHhc--CCCCcchH-HHHHHH
Q 020588           95 RRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIG--IPNLSALG-VWLGVS  171 (324)
Q Consensus        95 ~~g~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~i~~~~~~l~l~~--~~~l~~l~-~~S~~~  171 (324)
                      |.....+...-..+-.-++-.-++..+..++     +|.++. .+...|..++.+++ +.+..  .|...+.. |+|.+=
T Consensus       121 pa~GFa~gWnYw~~w~v~~~~El~aa~~vi~-----yW~p~~-v~~~~w~~iF~~~i-~~iN~~~Vk~fGE~Efw~s~iK  193 (541)
T COG0833         121 PAFGFALGWNYWLNWAVTLPLELTAASLVIQ-----YWFPDT-VPPWIWIAIFLVLI-FLLNLFGVKGFGETEFWFSSIK  193 (541)
T ss_pred             chHHHHHHHHHHHHHHHHhhHHHHHHHHhhh-----hhcCCC-CChHHHHHHHHHHH-HHHHHhcccccceehHHHHHHH
Confidence            7766555554333332222223333332222     443322 56677777776655 33332  24444444 445543


Q ss_pred             HHHHHHHHHHHhhhhhccCccC-CCCcCCC---CCCcchhhhhHHhhhhHHHHHhc-cCchhhhhccccCchhhhHHHHH
Q 020588          172 TVLSTIYIVIAIWLSVRDGLKN-PARDYSI---PGTTATKIFESIGACANLVFAFN-TGMLPEIQATIRQPVVENMMKAL  246 (324)
Q Consensus       172 ~~~~~~~~~i~i~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~a~~i~~faf~-h~~~~~i~~~m~~ps~~~~~~~~  246 (324)
                      ++..+.+..+.++. ...+.++ +....+.   ++.-+..+.++...+-+..|||+ .-++----.|-++|+ |..||++
T Consensus       194 V~~ii~Fii~gii~-~~Gg~~~~~~ig~~yw~~pg~F~~gf~g~~~v~v~a~Fsf~GtElvgiaAgEs~nP~-K~iPkAi  271 (541)
T COG0833         194 VLTIIGFIILGIII-ICGGGPTHGYIGFNYWHDPGAFAGGFKGFCSVFVIAAFSFSGTELVGLAAGESENPR-KSIPKAI  271 (541)
T ss_pred             HHHHHHHHHHHHHH-hcCCCCCCCCcceeeecCCCCCCcchHHHHHHHhhheeeeeceeeeeeeecccCCch-hhhHHHH
Confidence            33222222222221 1222221 1111111   11112334566666777788886 544433446778886 5788888


Q ss_pred             HHHHHHHHHHHHH
Q 020588          247 YFQFSVGVLPMFA  259 (324)
Q Consensus       247 ~~s~~~~~~~Y~~  259 (324)
                      .--+.=...+|+.
T Consensus       272 k~vfwRIl~FYi~  284 (541)
T COG0833         272 KQVFWRILLFYIL  284 (541)
T ss_pred             HHHHHHHHHHHHH
Confidence            8766666777755

>PRK11375 allantoin permease; Provisional

Probab=97.61  E-value=0.022  Score=56.32  Aligned_cols=186  Identities=13%  Similarity=0.034  Sum_probs=92.9

Q ss_pred             ccHHHHHHHHhCCCcchhHHHHHH-HHHHHHHHHHHHHHHhhHHHHHHHhcc-----CCC----CCCchhhH--HHHHHH
Q 020588           83 IRYRDLAGHIYGRRAYALTWGLQY-VNLFMINTGYIILAGQALKAAFVLFWK-----DDH----TMKLPYFI--AIAGFV  150 (324)
Q Consensus        83 ~sy~~l~~~~~G~~g~~~v~~~~~-~~~~g~~i~y~i~~~~~l~~i~~~~~~-----~~~----~~~~~~~~--~i~~~~  150 (324)
                      .++.-+.|..||++|.++..+... +..+|=-.......++.+..+.+...+     +++    ..+...++  +++.++
T Consensus        89 l~~~v~sR~sFG~~Gs~l~~~~rai~~~igW~~vqt~~~g~al~~~l~~i~~~~~~~~~~~~~~g~~~~~~i~~~i~~~l  168 (484)
T PRK11375         89 VPFAMILRASYGVRGALFPGLLRGGIAAIMWFGLQCYAGSLALLILIGKIWPGFLTLGGDFTLLGLSLPGLITFLIFWLV  168 (484)
T ss_pred             CChhHhHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCCcHHHHHHHHHHHHH
Confidence            578999999999999988888884 567777677777788888877766432     111    12222222  123332


Q ss_pred             HHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhhhhhccCccCCCCcCCCCC--CcchhhhhHHhhhhHHHHHhc--cCc
Q 020588          151 CALFAIGIPNLSALGVWLGVSTVLSTIYIVIAIWLSVRDGLKNPARDYSIPG--TTATKIFESIGACANLVFAFN--TGM  226 (324)
Q Consensus       151 ~~l~l~~~~~l~~l~~~S~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~~i~~faf~--h~~  226 (324)
                      . .+... ...|.+++++.++............+..+.+....+..+....+  ......+.+..++...+=++.  -..
T Consensus       169 ~-~~~~~-~g~~~i~~l~~i~~p~~~i~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~vig~~~~~~~~  246 (484)
T PRK11375        169 N-VGIGF-GGGKVLNKFTAILNPCIYIVFGGMAIWAISLVGIGPIFDYIPSGIQKAENSGFLFLVVINAVVAVWAAPAVS  246 (484)
T ss_pred             H-HHHHH-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhccCcccccCCcchHHHHHHHHHHHHHHHHHHHcc
Confidence            2 23333 34567777766654433222222221122111000111110000  001112334444433333444  457


Q ss_pred             hhhhhccccCchhhhHHHHHHHHHHHHHHHHHHHhhHH----hhhcCCCc
Q 020588          227 LPEIQATIRQPVVENMMKALYFQFSVGVLPMFAVTFVG----YWAYGNSS  272 (324)
Q Consensus       227 ~~~i~~~m~~ps~~~~~~~~~~s~~~~~~~Y~~~g~~g----y~~fG~~~  272 (324)
                      .|..-+..|+|  |+-.+.-.++..+...+...+|+..    ...+|+..
T Consensus       247 ~~D~tRy~k~~--~~~~~~~~~g~~i~~~~~~~~g~~~~~~a~~~~g~~~  294 (484)
T PRK11375        247 ASDFTQNAHSF--RAQALGQTLGLVVAYILFAVASVCIIAGASIHYGADT  294 (484)
T ss_pred             ccchhcccCCh--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence            88888888887  4444444445555444443333332    34555543

>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]

Probab=97.38  E-value=0.03  Score=54.29  Aligned_cols=181  Identities=16%  Similarity=0.095  Sum_probs=100.2

Q ss_pred             HHHHHHHhCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccCCCCCCchhhHHHHHHHHHHHHhcCCCCcchH
Q 020588           86 RDLAGHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALG  165 (324)
Q Consensus        86 ~~l~~~~~G~~g~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~i~~~~~~l~l~~~~~l~~l~  165 (324)
                      -.++|..||++|+++..+.+.+.++|-...-.+..++...        ...+.+...++++.+++++ ..... -.+.++
T Consensus        84 mi~sR~~fG~~Gs~l~sll~~~~~iGW~~v~~~l~~~a~~--------~~~~~~~~~~ili~g~l~~-l~~if-G~r~l~  153 (442)
T COG1457          84 MILSRYPFGVKGSILPSLLNGITLIGWFGVNVILSGIAIG--------SGTGLPVWAGILIIGVLMT-LVTIF-GYRALH  153 (442)
T ss_pred             heeecccccchhHHHHHHHHHHHHhhHHHHHHHHhccccc--------cCCCCcHHHHHHHHHHHHH-HHHHH-hHHHHH
Confidence            4468999999999999999999999998888888877611        1234455666777766552 22222 233444


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhc-cCccCCCCcCCCCCCcchhhhhHHhhhhHHHHHhc--cCchhhhhccccCchhhhH
Q 020588          166 VWLGVSTVLSTIYIVIAIWLSVR-DGLKNPARDYSIPGTTATKIFESIGACANLVFAFN--TGMLPEIQATIRQPVVENM  242 (324)
Q Consensus       166 ~~S~~~~~~~~~~~~i~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~faf~--h~~~~~i~~~m~~ps~~~~  242 (324)
                      .++..+...........++..+. ++..  +.....   ++.++.++..++...+=.+.  -....+.-+-+|+|+.++.
T Consensus       154 ~l~~~a~~~~~~lf~~l~~~~~~~~~~~--~~~~~~---~~~~~~~fl~a~slv~g~~~sw~~~~aDysRy~~~~t~~~~  228 (442)
T COG1457         154 KLERIAVPLLLLLFLYLLALLFRSKGGL--DALWVK---GPTSPLSFLSALSLVIGSFASWGPYAADYSRYAPSPTPSKA  228 (442)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccccc--ceeecc---CCCcchhHHHHHHHHHHHHHhhhhhhhhhhhhcCCCchHHH
Confidence            44444333222222222222222 1111  111111   12223344444443322232  4677788788888732244


Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHhhhcCCCc-ccccccCcC
Q 020588          243 MKALYFQFSVGVLPMFAVTFVGYWAYGNSS-SSYLLNNVS  281 (324)
Q Consensus       243 ~~~~~~s~~~~~~~Y~~~g~~gy~~fG~~~-~~~il~~~~  281 (324)
                      -.....+......+-..+|...-.+=|++. ..++...+.
T Consensus       229 ~~~~~~G~~l~~~~~~ilGa~~a~a~g~~~~~~~~~~~~G  268 (442)
T COG1457         229 FLAAVLGFFLGTSFMMILGAALAAAAGNADSIADVMLGLG  268 (442)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHhcc
Confidence            445556666666666777888888877765 333333333

>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX

Probab=97.35  E-value=0.035  Score=53.32  Aligned_cols=174  Identities=13%  Similarity=0.078  Sum_probs=102.6

Q ss_pred             ccHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccCCCCCCchhhHHHHHHHHHHHHhcCCCCc
Q 020588           83 IRYRDLAGHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLS  162 (324)
Q Consensus        83 ~sy~~l~~~~~G~~g~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~i~~~~~~l~l~~~~~l~  162 (324)
                      .++.-+.|..||++|.++..+...+...|--.......++.++.+.+...+.+   +...++.+++++. .+.+.. ..|
T Consensus        58 l~~~v~sR~~FG~~Gs~~~~~l~~i~~igW~~v~~~~gg~~l~~~~~~~~~~~---~~~~~~~i~~~l~-~~~~~~-G~~  132 (386)
T TIGR02358        58 LSAMGSLKLSLGSKGSVLPSLLNLLQLVGWTAVMIIVGAKAASLLGGRLFGEE---SPMLWILIVGILV-TLWLLS-GPL  132 (386)
T ss_pred             cCHHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---chHHHHHHHHHHH-HHHHHH-HHH
Confidence            46889999999999999999999999999888888899999999876532211   1233444444433 233333 356


Q ss_pred             chHHHHHHHHHHHHHHHHHHhhhhhccCccCCCCcCCCCCCcchhhhhHHhhhhHHHHHh--c-cCchhhhhccccCchh
Q 020588          163 ALGVWLGVSTVLSTIYIVIAIWLSVRDGLKNPARDYSIPGTTATKIFESIGACANLVFAF--N-TGMLPEIQATIRQPVV  239 (324)
Q Consensus       163 ~l~~~S~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~faf--~-h~~~~~i~~~m~~ps~  239 (324)
                      .++++..++............+....+... ++ ..+.    +.+ ..+..++... .++  . -...|+..+..|+|  
T Consensus       133 ~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~-~~~~----~~~-~s~~~~~~~~-~~~~~swa~~~~DysRy~k~~--  202 (386)
T TIGR02358       133 AFVWLNNWSVWLLLIATLWLLVVVFSKADL-SE-LWNR----AGD-MSFAVAVELV-IAMPLSWLPLIADYTRFARNP--  202 (386)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccch-hh-hcCC----CCC-ccHHHHHHHH-HHHHHHHHHHccchhhhcCCC--
Confidence            677776665443332222222212222111 01 1111    111 2223333322 222  2 34578888887777  


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhhHHhhhcCCC
Q 020588          240 ENMMKALYFQFSVGVLPMFAVTFVGYWAYGNS  271 (324)
Q Consensus       240 ~~~~~~~~~s~~~~~~~Y~~~g~~gy~~fG~~  271 (324)
                      |+..+...++..+...+-..+|...-.+.+++
T Consensus       203 ~~~~~~~~~G~~i~~~~~~~~G~~~~~a~~~~  234 (386)
T TIGR02358       203 RHVFLGTVLGYFIGSCWMYFLGLAVTLATGQT  234 (386)
T ss_pred             cceehHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            56666777777777777777787766666653

On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.

>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter

Probab=97.34  E-value=0.025  Score=55.67  Aligned_cols=47  Identities=15%  Similarity=0.075  Sum_probs=37.6

Q ss_pred             HHHHHhc-cCchhhhhccccCchhhhHHHHHHHHHHHHHHHHHHHhhHH
Q 020588          217 NLVFAFN-TGMLPEIQATIRQPVVENMMKALYFQFSVGVLPMFAVTFVG  264 (324)
Q Consensus       217 i~~faf~-h~~~~~i~~~m~~ps~~~~~~~~~~s~~~~~~~Y~~~g~~g  264 (324)
                      .+.|+|. .......-+|+|||+ |+.+|++..+..++.++|++....-
T Consensus       202 ~~~~af~G~e~~~~~a~E~knP~-r~iPrAi~~~~~~~~~~y~l~~~~~  249 (474)
T TIGR03813       202 SIFLFYAGMEMNAVHVKDVDNPD-KNYPIAILIAALGTVLIFVLGTLAI  249 (474)
T ss_pred             HHHHHHhchhHhHHHHHhccCcc-cchhHHHHHHHHHHHHHHHHHHHHH
Confidence            3578895 666666778999996 6899999999999999998765543

Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.

>COG3949 Uncharacterized membrane protein [Function unknown]

Probab=97.21  E-value=0.022  Score=52.62  Aligned_cols=98  Identities=16%  Similarity=0.166  Sum_probs=71.6

Q ss_pred             hhhhhhccccccccc----hhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccccHHHHHHHHhCCCcchh
Q 020588           25 GFVLTTGINSAYVLG----YPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYGRRAYAL  100 (324)
Q Consensus        25 ~~~l~~~~iG~GiL~----LP~a~~~~~G~i~g~i~li~~~~~~~yt~~lL~~~~~~~~~~~~sy~~l~~~~~G~~g~~~  100 (324)
                      .|-.+.+.+|+|.=+    +=+  |.+-|+ .|..-.++++.+-..++..+.+..++-+.  .+|+|.-++.+||+..++
T Consensus         9 ~f~~ig~~vGAGfAsGqEi~QF--F~~~G~-~s~~gIivs~vlf~~~g~vim~ig~~f~a--~~y~~~~~~v~~~~~~ki   83 (349)
T COG3949           9 AFAFIGTVVGAGFASGQEIMQF--FGKYGV-YSILGIILSTVLFTLSGAVIMTIGKKFNA--TSYREILKYVSGPKFAKI   83 (349)
T ss_pred             HHHHHHHhhcccccchHHHHHH--HHHhhh-hhhHHHHHHHHHHHHHHHHHHHHHHHhcc--cchHHHHHHHhhHHHHHH
Confidence            455667888887643    111  344554 35556666777777777777776554333  379999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 020588          101 TWGLQYVNLFMINTGYIILAGQALKAA  127 (324)
Q Consensus       101 v~~~~~~~~~g~~i~y~i~~~~~l~~i  127 (324)
                      .++.+...++++++.-+-..|+.++..
T Consensus        84 ~d~~iif~lf~~~vVM~AGags~~~e~  110 (349)
T COG3949          84 IDIIIIFFLFSTAVVMLAGAGSLLEEM  110 (349)
T ss_pred             HHHHHHHHHHHHHHHHhccchhHHHHH
Confidence            999999999999998887777677653

>TIGR02119 panF sodium/pantothenate symporter

Probab=97.20  E-value=0.16  Score=50.09  Aligned_cols=146  Identities=15%  Similarity=0.057  Sum_probs=87.4

Q ss_pred             cccccccceeehhhhhhhccccc-cccchhhhhhhccchhHHHHHHH--HHHHHHH-HHHHHHHHHhhhcCcccccHHHH
Q 020588           13 FHLEMLDSWFQVGFVLTTGINSA-YVLGYPGTVMVPLGWIAGVVGLI--IATIVSL-NANALIAKLHEFGGKRHIRYRDL   88 (324)
Q Consensus        13 ~~~~~~~s~~~~~~~l~~~~iG~-GiL~LP~a~~~~~G~i~g~i~li--~~~~~~~-yt~~lL~~~~~~~~~~~~sy~~l   88 (324)
                      ....|+.+++...+.+..+.+|+ ..++.|-- ..+.|+.+..+...  ..+.++. .-+..+.+..++.|  ..|..|.
T Consensus        36 ~~agr~l~~~~~~~s~~at~~s~~t~~g~~g~-~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~T~~e~  112 (471)
T TIGR02119        36 FLGGRSMGGFVLAMTLVATYGSASSFIGGPGI-AYNYGLGWVLLAMIQVPTGYFVLGVLGKKFAIISRKYN--AITINDV  112 (471)
T ss_pred             eEeCCcccHHHHHHHHHHHHhhHHHHcCcHHH-HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CccHHHH
Confidence            34456778888889999999986 48889988 88888643211111  1111111 11122222233333  3699999


Q ss_pred             HHHHhCCCc-chhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccCCCCCCchhhHHHHHHHHHHHHhcCCCCcchHHH
Q 020588           89 AGHIYGRRA-YALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVW  167 (324)
Q Consensus        89 ~~~~~G~~g-~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~i~~~~~~l~l~~~~~l~~l~~~  167 (324)
                      -++-||++. +++..+...+..++...+.+...+..++.+++        ++...-+++.+++. +....+--++...+.
T Consensus       113 l~~Ryg~~~~~~~~~i~~i~~~~~~~~~ql~g~g~~l~~~~g--------i~~~~~iii~~~iv-~iYt~~GG~~av~~t  183 (471)
T TIGR02119       113 LKARYNNKFLVWLSSISLLVFFFSAMVAQFIGGARLIESLTG--------LSYLTALFIFSSSV-LIYTTFGGFRAVALT  183 (471)
T ss_pred             HHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------CCHHHHHHHHHHHH-HHHHHhhhHHHHHHH
Confidence            999999665 67788888877777777777777777766532        23233333333332 233344566676666


Q ss_pred             HHH
Q 020588          168 LGV  170 (324)
Q Consensus       168 S~~  170 (324)
                      ..+
T Consensus       184 d~i  186 (471)
T TIGR02119       184 DAI  186 (471)
T ss_pred             HHH
Confidence            665

Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.

>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]

Probab=97.13  E-value=0.16  Score=50.36  Aligned_cols=151  Identities=14%  Similarity=0.023  Sum_probs=93.6

Q ss_pred             cccccceeehhhhhhhcccc-ccccchhhhhhhccchhHHHHHHH---HHHHHHHHHHHHHHHHhhhcCcccccHHHHHH
Q 020588           15 LEMLDSWFQVGFVLTTGINS-AYVLGYPGTVMVPLGWIAGVVGLI---IATIVSLNANALIAKLHEFGGKRHIRYRDLAG   90 (324)
Q Consensus        15 ~~~~~s~~~~~~~l~~~~iG-~GiL~LP~a~~~~~G~i~g~i~li---~~~~~~~yt~~lL~~~~~~~~~~~~sy~~l~~   90 (324)
                      ..|+.+.+-..+....+..+ .-.+++|-. ..+.|+....+...   .......+...-+.|..+.  ++..|..|.-+
T Consensus        36 ~gR~lg~~v~~ls~~as~~s~~t~lG~~g~-ay~~G~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~--~~~~T~~d~l~  112 (493)
T COG0591          36 GGRSLGPFVYALSAAASDTSGWTFLGLPGL-AYASGLSGLWIAIGLLIGAFLLWLLFAPRLRRLAKA--RGATTIPDFLE  112 (493)
T ss_pred             cCCcCChHHHHHHHHHHHHHHHHHhcchHH-HHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--cCCccHHHHHH
Confidence            34444555666777777777 679999998 89999754333332   2222222333333333321  23468999999


Q ss_pred             HHhC-CCcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccCCCCCCchhhHHHHHHHHHHHHhcCCCCcchHHHHH
Q 020588           91 HIYG-RRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLG  169 (324)
Q Consensus        91 ~~~G-~~g~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~i~~~~~~l~l~~~~~l~~l~~~S~  169 (324)
                      +-|| ++.|.+..+...+..++-+...+...++.++..+.        .+...-+++.+.++ +.-..+--++...+...
T Consensus       113 ~Rf~s~~lr~l~ali~iv~~i~yia~ql~~~~~~~~~~~g--------i~~~~~~~~~~~~v-~~Yt~~gG~~av~~Td~  183 (493)
T COG0591         113 ARFGSKILRILSALIIIVFFIPYIALQLVAGGLLLSLLFG--------ISYVTGILIGALIV-ALYTFLGGLRAVVWTDF  183 (493)
T ss_pred             HHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC--------CCHHHHHHHHHHHH-HHHHHHcChhHHHHHHH
Confidence            9999 88899999999999999999999888888865432        22222223333333 23334445677777776


Q ss_pred             H-HHHHHHH
Q 020588          170 V-STVLSTI  177 (324)
Q Consensus       170 ~-~~~~~~~  177 (324)
                      + +.++.+.
T Consensus       184 iqg~im~i~  192 (493)
T COG0591         184 IQGLIMLIA  192 (493)
T ss_pred             HHHHHHHHH
Confidence            6 4444433

>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines

Probab=97.05  E-value=0.019  Score=55.94  Aligned_cols=102  Identities=20%  Similarity=0.255  Sum_probs=60.5

Q ss_pred             eeehhhhhhhccccccccchhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccccHHHHHHHHhCCCcchh
Q 020588           21 WFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYGRRAYAL  100 (324)
Q Consensus        21 ~~~~~~~l~~~~iG~GiL~LP~a~~~~~G~i~g~i~li~~~~~~~yt~~lL~~~~~~~~~~~~sy~~l~~~~~G~~g~~~  100 (324)
                      |++..+++.+-.+|+..+++      ..++.-+++..++...+..--.-+....-.++|   .+..-++|..||.+|+.+
T Consensus        18 W~~~~~~~~~~~~G~~~~~~------gL~~~~ailai~~G~~l~~i~~~~~~~~G~r~G---l~~~v~sR~~FG~~Gs~l   88 (440)
T PF02133_consen   18 WFGANISIATFVTGALGVAL------GLSFWQAILAILIGNLLGAILVALMGIIGPRTG---LPTMVLSRASFGYRGSKL   88 (440)
T ss_dssp             HCHHH-SCHHH-HHHHHHCC------CS-HHHHHHHHHHHHHHHHHHHHHHTHHHHCC------HHHHTTTTS-TTTTHH
T ss_pred             HHHHHHHHHHHHHHHHHHcc------CchHHHHHHHHHHHHHHHHHHHHHhcccccccC---CCchhcchhccCcchHHH
Confidence            34444455555555543221      223333444444433333222333333333444   467889999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHh
Q 020588          101 TWGLQYVNLFMINTGYIILAGQALKAAFVLF  131 (324)
Q Consensus       101 v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~  131 (324)
                      ..+...+..+|-...-..+.++.+..+.+..
T Consensus        89 ~~~l~~i~~igW~av~~~~~g~al~~~~~~~  119 (440)
T PF02133_consen   89 PSLLRAISAIGWFAVNTWLGGQALAALLGII  119 (440)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            9999999999998888899999999887653

Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.

>PRK11017 codB cytosine permease; Provisional

Probab=96.92  E-value=0.11  Score=50.25  Aligned_cols=172  Identities=16%  Similarity=0.119  Sum_probs=83.2

Q ss_pred             ccHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccCCCCCCchhhHHHHHHHHHHHHhcCCCCc
Q 020588           83 IRYRDLAGHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLS  162 (324)
Q Consensus        83 ~sy~~l~~~~~G~~g~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~i~~~~~~l~l~~~~~l~  162 (324)
                      .++.-+.|..||++|.++..+...+..+|-........++.++.+.   +     .+...+.++++++. .+..... .+
T Consensus        71 ~~~~v~sR~~FG~~Gs~l~~~~~~i~~igW~av~~~~~~~~l~~~~---~-----~~~~~~~~i~~~l~-~~~~~~G-~~  140 (404)
T PRK11017         71 LSTHLLARFSFGEKGSWLPSLLLGFTQVGWFGVGVAMFAIPVVKAT---G-----LDINLLIVLSGLLM-TVTAYFG-IS  140 (404)
T ss_pred             cCHHHHHHHHhchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh---C-----CCHHHHHHHHHHHH-HHHHHHH-HH
Confidence            5789999999999999999988888887766665555666555432   1     12222444444443 2333332 34


Q ss_pred             chHHHHHHHHHHHHHHHHHHhhhhhccCccCCCCcCCCCCCcchhhhhHHhhhhHHHHHhc--cCchhhhhccccCchhh
Q 020588          163 ALGVWLGVSTVLSTIYIVIAIWLSVRDGLKNPARDYSIPGTTATKIFESIGACANLVFAFN--TGMLPEIQATIRQPVVE  240 (324)
Q Consensus       163 ~l~~~S~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~faf~--h~~~~~i~~~m~~ps~~  240 (324)
                      .++++...+........+...+....+....++.. +.+   +.....+..++...+=.+.  -...++.-+..|+|  |
T Consensus       141 ~i~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~~-~~~---~~~~~~~~~a~~~~~g~~~~~~~~~~DysRy~k~~--~  214 (404)
T PRK11017        141 ALTILSRIAVPAIALLGGYSVWLAVNDVGGLDGLK-AIV---PAEPLDFSAALTLVVGSFISGGTLTADFVRFGRSA--K  214 (404)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhh-cCC---CCCcccHHHHHHHHHHHHHHhHhcCCChHhhccCc--c
Confidence            44444444332222111111111122110000000 000   1111234444443332232  46778887777766  3


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhHHhhhcCC
Q 020588          241 NMMKALYFQFSVGVLPMFAVTFVGYWAYGN  270 (324)
Q Consensus       241 ~~~~~~~~s~~~~~~~Y~~~g~~gy~~fG~  270 (324)
                      +.......+..+...+-..+|...-.+.|+
T Consensus       215 ~~~~~~~lg~~i~~~~~~~~G~~~a~~~~~  244 (404)
T PRK11017        215 IAVLATMVAFFLGNSLMFIFGAAGAAVYGQ  244 (404)
T ss_pred             ceeehhHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            322334444444444444555554455554

>TIGR00813 sss transporter, SSS family

Probab=96.90  E-value=0.049  Score=52.52  Aligned_cols=142  Identities=14%  Similarity=0.088  Sum_probs=89.2

Q ss_pred             ccccceeehhhhhhhccccc-cccchhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccccHHHHHHHHhC
Q 020588           16 EMLDSWFQVGFVLTTGINSA-YVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYG   94 (324)
Q Consensus        16 ~~~~s~~~~~~~l~~~~iG~-GiL~LP~a~~~~~G~i~g~i~li~~~~~~~yt~~lL~~~~~~~~~~~~sy~~l~~~~~G   94 (324)
                      .|+.+++...+.+..+.+|+ ..++.|-. ..+.|+. +................+..+..++.+  ..|..|.-++-||
T Consensus         2 gr~~~~~~~~~s~~at~~s~~t~ig~~~~-~y~~G~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~T~~e~l~~Ryg   77 (407)
T TIGR00813         2 GRSLGGWVVAASLFASYISASQFLGLPGA-IYAYGFA-IGFYELGALVLLIILGWLFVPIFINNG--AYTMPEYLEKRFG   77 (407)
T ss_pred             CCCCCcHHHHHHHHHHHhhHHHHhcCcHH-HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHcC--CCchhHHHHHHhC
Confidence            36677888888888888885 68999988 8888863 322222222223334444545444433  4689999999999


Q ss_pred             CC-cchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccCCCCCCchhhHHHHHHHHHHHHhcCCCCcchHHHHHH
Q 020588           95 RR-AYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGV  170 (324)
Q Consensus        95 ~~-g~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~i~~~~~~l~l~~~~~l~~l~~~S~~  170 (324)
                      ++ .|.+..+...+..+......+...+..++.+++        ++...-+++.+.++ +....+--++...+.-.+
T Consensus        78 ~~~~~~~~~~~~i~~~~~~~~~q~~g~~~il~~~~g--------i~~~~~~ii~~~i~-~~Yt~~GG~~av~~Td~i  145 (407)
T TIGR00813        78 KRILRGLSVLSLILYIFLYMSVDLFSGALLIELITG--------LDLYLSLLLLGAIT-ILYTVFGGLKAVVWTDTI  145 (407)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------chHHHHHHHHHHHH-HHHHHHcchHHHHHHHHH
Confidence            84 677777777778888888888888877776532        22222233333333 333444566666666555

have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.

>PRK09442 panF sodium/panthothenate symporter; Provisional

Probab=96.83  E-value=0.59  Score=46.21  Aligned_cols=146  Identities=18%  Similarity=0.092  Sum_probs=83.1

Q ss_pred             cccccccceeehhhhhhhccccc-cccchhhhhhhccchhHHHHHH--HHHHHHHH-HHHHHHHHHhhhcCcccccHHHH
Q 020588           13 FHLEMLDSWFQVGFVLTTGINSA-YVLGYPGTVMVPLGWIAGVVGL--IIATIVSL-NANALIAKLHEFGGKRHIRYRDL   88 (324)
Q Consensus        13 ~~~~~~~s~~~~~~~l~~~~iG~-GiL~LP~a~~~~~G~i~g~i~l--i~~~~~~~-yt~~lL~~~~~~~~~~~~sy~~l   88 (324)
                      ....|+.+++...+.+..+.+|+ ..++.|-. ..+.|+.......  .....++. .-+..+.+..++.+  ..|..|.
T Consensus        37 ~~agr~~~~~~~~~s~~at~~s~~t~ig~~g~-~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~--~~T~~e~  113 (483)
T PRK09442         37 FLGNRSMGGFVLAMTLIATYISASSFIGGPGA-AYKYGLGWVLLAMIQVPTVWLSLGILGKKFAILARKYN--AVTLNDM  113 (483)
T ss_pred             eeeCCCccHHHHHHHHHHHHhhHhHHhCChhH-HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CccHHHH
Confidence            34456667787888888887775 68888877 7777863211111  11111111 12222333333333  4699999


Q ss_pred             HHHHhCCCc-chhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccCCCCCCchhhHHHHHHHHHHHHhcCCCCcchHHH
Q 020588           89 AGHIYGRRA-YALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVW  167 (324)
Q Consensus        89 ~~~~~G~~g-~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~i~~~~~~l~l~~~~~l~~l~~~  167 (324)
                      -++-||++. +.+..+...+..++...+.+...+..++.+++        ++...-+++.++++ +....+-.++...+.
T Consensus       114 l~~Ryg~~~~~~~~~i~~~~~~~~~~~~ql~~~g~~l~~~~g--------i~~~~~iii~~~iv-~iYt~~GGl~av~~T  184 (483)
T PRK09442        114 LRARYQSRLLVWLASLSLLVFFFAAMTAQFIGGARLLETATG--------ISYETGLLIFGITV-ALYTAFGGFRAVVLT  184 (483)
T ss_pred             HHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------CCHHHHHHHHHHHH-HHHHHhccHHHHHHH
Confidence            999999764 55666666666666666667777777766531        23333334444433 344455566776666


Q ss_pred             HHH
Q 020588          168 LGV  170 (324)
Q Consensus       168 S~~  170 (324)
                      -.+
T Consensus       185 D~i  187 (483)
T PRK09442        185 DAL  187 (483)
T ss_pred             HHH
Confidence            655

>PRK12488 acetate permease; Provisional

Probab=96.56  E-value=0.66  Score=46.70  Aligned_cols=142  Identities=16%  Similarity=0.099  Sum_probs=87.4

Q ss_pred             cccccceeehhhhhhhcccccc-ccchhhhhhhccchhHHHHHHHHHHHHHH-HHHHHHHHHhhhcCcccccHHHHHHHH
Q 020588           15 LEMLDSWFQVGFVLTTGINSAY-VLGYPGTVMVPLGWIAGVVGLIIATIVSL-NANALIAKLHEFGGKRHIRYRDLAGHI   92 (324)
Q Consensus        15 ~~~~~s~~~~~~~l~~~~iG~G-iL~LP~a~~~~~G~i~g~i~li~~~~~~~-yt~~lL~~~~~~~~~~~~sy~~l~~~~   92 (324)
                      ..|+.+++...+.+..+.++++ .++.|-. ..+.|+- +....+. ..+.. ....++.+-.++.++  .|..|.-++=
T Consensus        65 aGR~l~~~~~~~si~at~~Sa~sflG~~G~-~y~~G~~-~~~~~~g-~~~g~~~~~~~~a~~lr~~g~--~T~~d~l~~R  139 (549)
T PRK12488         65 AGGGLTGMQNGLAIAGDMISAASFLGISAM-MFMNGYD-GLLYALG-VLAGWPIILFLIAERLRNLGK--YTFADVVSYR  139 (549)
T ss_pred             eCCCCcHHHHHHHHHHHHHHHHHHHHHHHH-HHHhChh-HHHHHHH-HHHHHHHHHHHHHHHHHHCCC--cchHHHHHHH
Confidence            3467788888889988888864 7999987 7888863 2222111 11111 112334443334443  6889988877


Q ss_pred             hC-CCcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccCCCCCCchhhHHHHHHHHHHHHhcCCCCcchHHHHHH
Q 020588           93 YG-RRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGV  170 (324)
Q Consensus        93 ~G-~~g~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~i~~~~~~l~l~~~~~l~~l~~~S~~  170 (324)
                      || |+.|.+..+...+..+.-....+...|..++.+++        ++...-+++.+++. +.-..+--++...+...+
T Consensus       140 f~s~~~r~laai~~i~~~~~yl~~q~~g~g~il~~l~g--------i~~~~~iii~~~i~-~~Yt~~GGm~av~~td~i  209 (549)
T PRK12488        140 LAQGPVRLTAAFGTLTVVLMYLVAQMVGAGKLIELLFG--------ISYLYAVVIVGALM-VLYVTFGGMLATTWVQII  209 (549)
T ss_pred             cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------CCHHHHHHHHHHHH-HHHHhccchhHHHHHHHH
Confidence            87 55788888887777777777777777777766531        22222233444443 344455567777777766

>TIGR02711 symport_actP cation/acetate symporter ActP

Probab=96.35  E-value=1.2  Score=44.73  Aligned_cols=142  Identities=17%  Similarity=0.125  Sum_probs=81.8

Q ss_pred             cccccceeehhhhhhhcccc-ccccchhhhhhhccchhHHHHHHHHHHHHHH-HHHHHHHHHhhhcCcccccHHHHHHHH
Q 020588           15 LEMLDSWFQVGFVLTTGINS-AYVLGYPGTVMVPLGWIAGVVGLIIATIVSL-NANALIAKLHEFGGKRHIRYRDLAGHI   92 (324)
Q Consensus        15 ~~~~~s~~~~~~~l~~~~iG-~GiL~LP~a~~~~~G~i~g~i~li~~~~~~~-yt~~lL~~~~~~~~~~~~sy~~l~~~~   92 (324)
                      ..|+.+++...+.+..+.++ +..++.|-. ..+.|+- +....+. ..+.. -...++.+-.++.|+  .|..|.-++=
T Consensus        65 aGr~~~~~~~g~si~at~~SaasflG~~G~-~y~~G~~-~~~~~~g-~~~~~~i~~~~~a~~lrr~g~--~T~~d~l~~R  139 (549)
T TIGR02711        65 AGGNITGFQNGLAIAGDYMSAASFLGISAL-VYTSGYD-GLIYSLG-FLVGWPIILFLIAERLRNLGR--YTFADVASYR  139 (549)
T ss_pred             eCCCccHHHHHHHHHHHHHHHHHHHHHHHH-HHHhChH-HHHHHHH-HHHHHHHHHHHHHHHHHHcCC--ccHHHHHHHH
Confidence            34566677777788878777 578999987 7777863 2222211 11111 223334443344443  6899988887


Q ss_pred             hCCC-cchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccCCCCCCchhhHHHHHHHHHHHHhcCCCCcchHHHHHH
Q 020588           93 YGRR-AYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGV  170 (324)
Q Consensus        93 ~G~~-g~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~i~~~~~~l~l~~~~~l~~l~~~S~~  170 (324)
                      ||++ .|.+..+...+..+.-....+...+..++.+++        ++...-+++.+.++ +.-..+--++...+...+
T Consensus       140 f~s~~~r~l~ai~~i~~~~~yl~~ql~g~g~il~~~~g--------i~~~~~iii~~~i~-~~Yt~~GGm~av~~td~i  209 (549)
T TIGR02711       140 LKQRPIRILSACGSLVVVALYLIAQMVGAGKLIELLFG--------LNYHVAVVLVGILM-VMYVLFGGMLATTWVQII  209 (549)
T ss_pred             cCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------CCHHHHHHHHHHHH-HHHHHhhhhHHHHHHHHH
Confidence            8754 577777777666666666666666666665531        22222233344433 344444566676777666

Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.

>PRK09395 actP acetate permease; Provisional

Probab=96.25  E-value=0.96  Score=45.56  Aligned_cols=144  Identities=16%  Similarity=0.069  Sum_probs=83.7

Q ss_pred             ccccccceeehhhhhhhccccc-cccchhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccccHHHHHHHH
Q 020588           14 HLEMLDSWFQVGFVLTTGINSA-YVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHI   92 (324)
Q Consensus        14 ~~~~~~s~~~~~~~l~~~~iG~-GiL~LP~a~~~~~G~i~g~i~li~~~~~~~yt~~lL~~~~~~~~~~~~sy~~l~~~~   92 (324)
                      ...|+.+++...+.+..+.+++ ..++.|-. ..+.|+.. ....+....-......++.+-.++.+.  .|+.|.-++=
T Consensus        66 ~agr~l~~~~~~~si~At~~Sa~tfiG~~g~-~y~~G~~~-~~~~~~~~~g~~~~~~~~~~~~r~~g~--~T~~d~l~~R  141 (551)
T PRK09395         66 TAGGGITGFQNGLAIAGDYMSAASFLGISAL-VFTSGYDG-LIYSIGFLVGWPIILFLIAERLRNLGK--YTFADVASYR  141 (551)
T ss_pred             hcCCCCcHHHHHHHHHHHHHHHHHHHHhhHH-HHHhCHHH-HHHHHHHHHHHHHHHHHHHHHHhhCCC--ccHHHHHHHH
Confidence            3446677777888888888885 58999987 77888732 221111111111222333443334443  6999988888


Q ss_pred             hCCC-cchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccCCCCCCchhhHHHHHHHHHHHHhcCCCCcchHHHHHH
Q 020588           93 YGRR-AYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGV  170 (324)
Q Consensus        93 ~G~~-g~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~i~~~~~~l~l~~~~~l~~l~~~S~~  170 (324)
                      ||++ .|.+..+...+..+....+.+...+..++.+++        ++...-+++.++++ +.-..+--++...+...+
T Consensus       142 ygs~~~r~l~av~~iv~~~~yl~~q~~g~g~il~~~~g--------i~~~~~ili~~~i~-~iYt~~GGm~av~~TD~i  211 (551)
T PRK09395        142 LKQGPIRTLSACGSLVVVALYLIAQMVGAGKLIQLLFG--------LNYHVAVVLVGVLM-MVYVLFGGMLATTWVQII  211 (551)
T ss_pred             cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------CCHHHHHHHHHHHH-HHHHhhcchHHHHHHHHH
Confidence            9854 677777776666666666666666666655421        23233334444433 344445566676666665

>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex

Probab=96.22  E-value=0.11  Score=48.98  Aligned_cols=102  Identities=15%  Similarity=0.168  Sum_probs=76.5

Q ss_pred             cceeehhhhhhhccccccccchhhhhhhccchhHHHHHHHH----HHHHHHHHHHHHHHHhhhcCcccccHHHHHHHHhC
Q 020588           19 DSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLII----ATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYG   94 (324)
Q Consensus        19 ~s~~~~~~~l~~~~iG~GiL~LP~a~~~~~G~i~g~i~li~----~~~~~~yt~~lL~~~~~~~~~~~~sy~~l~~~~~G   94 (324)
                      ...+....|=..++-|+|-+-=|-. -.+-||+|+.+-.++    .|.+-.|...+.  ..|+.|   .|..|++++..|
T Consensus        52 ~~~~vlfghhf~sIAGaGPI~GPi~-aa~~GwlPa~lWI~~G~if~GaVHD~~sl~~--SvR~~G---~Si~~i~~~~lG  125 (376)
T PF02554_consen   52 TNKWVLFGHHFASIAGAGPIVGPIL-AAQFGWLPALLWIVFGCIFAGAVHDYGSLMA--SVRHKG---KSIGEIAGKYLG  125 (376)
T ss_pred             CchHHhhHHHHHHHhccccchHHHH-HHHhcchHHHHHHHHccHHHHHHHHHHHHhh--hhcCCC---ccHHHHHHHHHH
Confidence            4455566677789999999999998 899999988887654    333444444333  122333   389999999999


Q ss_pred             CCcchhHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 020588           95 RRAYALTWGLQYVNLFMINTGYIILAGQALKA  126 (324)
Q Consensus        95 ~~g~~~v~~~~~~~~~g~~i~y~i~~~~~l~~  126 (324)
                      |++|++..+...+.++-...++....++.+..
T Consensus       126 ~~~~~lf~~f~~~~lilV~avF~~v~a~~~~~  157 (376)
T PF02554_consen  126 KRAKKLFLIFIFFLLILVIAVFADVVANTFVN  157 (376)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            99999999999988888888887777766654

This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane

>TIGR00835 agcS amino acid carrier protein

Probab=96.12  E-value=0.12  Score=50.00  Aligned_cols=85  Identities=12%  Similarity=-0.075  Sum_probs=51.7

Q ss_pred             cccceeehhhhhhhcccccc-ccchhhhhhhccchhHHHHH---HHHHHHHHHHHHHHHHHHhhhcCcccccH-----HH
Q 020588           17 MLDSWFQVGFVLTTGINSAY-VLGYPGTVMVPLGWIAGVVG---LIIATIVSLNANALIAKLHEFGGKRHIRY-----RD   87 (324)
Q Consensus        17 ~~~s~~~~~~~l~~~~iG~G-iL~LP~a~~~~~G~i~g~i~---li~~~~~~~yt~~lL~~~~~~~~~~~~sy-----~~   87 (324)
                      ++.|-+|+.+....+.+|.| ++++|-| .+..| --+++-   ..+.+..+.|.-..|..-.++.++ +.+|     -.
T Consensus        45 g~iS~fqA~~~ala~~VG~GnI~Gva~A-i~~GG-pGAvFWMWI~allGm~~~~~e~~L~~~yr~~~~-~g~~~GGP~yy  121 (425)
T TIGR00835        45 GGVSSFQALFTSLAARVGIGNIVGVATA-IAIGG-PGAVFWMWVTAFIGMATKFVESTLAQKYRERDA-DGVFRGGPMYY  121 (425)
T ss_pred             CCccHHHHHHHHHHHHHhhhHHHHHHHH-HHhcC-CCchHHHHHHHHHHHHHHHHHHHHHHHeeeeCC-CCCEecChHHH
Confidence            34799999999999999998 9999999 88887 123222   222333444444444433332211 1235     56


Q ss_pred             HHHHHhCCCcchhHHHH
Q 020588           88 LAGHIYGRRAYALTWGL  104 (324)
Q Consensus        88 l~~~~~G~~g~~~v~~~  104 (324)
                      +-+...|||...+..++
T Consensus       122 i~~gl~~k~lg~lfa~~  138 (425)
T TIGR00835       122 IKKGLGMRWLAVLFAVF  138 (425)
T ss_pred             HHHHhCccHHHHHHHHH
Confidence            77776666655555544

Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.

>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells

Probab=96.01  E-value=0.23  Score=47.70  Aligned_cols=142  Identities=20%  Similarity=0.171  Sum_probs=78.3

Q ss_pred             ccccceeehhhhhhhccccc-cccchhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccccHHHHHHHHhC
Q 020588           16 EMLDSWFQVGFVLTTGINSA-YVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYG   94 (324)
Q Consensus        16 ~~~~s~~~~~~~l~~~~iG~-GiL~LP~a~~~~~G~i~g~i~li~~~~~~~yt~~lL~~~~~~~~~~~~sy~~l~~~~~G   94 (324)
                      .|+.+++...+.+..+.+|+ .+++.|-. ..+.|+.. ....+............+.+-.++.+  ..|..|.-++-||
T Consensus         5 gr~~~~~~~~~s~~at~~s~~t~~G~~g~-~y~~G~~~-~~~~~~~~~~~~~~~~~~~~~~r~~~--~~T~~e~~~~Ryg   80 (406)
T PF00474_consen    5 GRSLGWWVVAFSLVATWISAWTFIGFPGF-AYSYGISG-LWYAIGYAIGFLLFALFFAPRLRRSG--AVTIPEYLEKRYG   80 (406)
T ss_dssp             -S---HHHHHHHHHHHHSSHHHHTHHHHH-HHHT-GGG-GHHHHHHHHHHHHHHHHTHHHHHHTT----SHHHHHHHHT-
T ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHHHHHH-hhcCCcce-eeeccccchhHHHHHHHHHHhhcccc--hhhhhhhhhhhcC
Confidence            45667888888888888886 58899988 88888753 22323333333334444555444333  4689999999999


Q ss_pred             CCc--chhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccCCCCCCchhhHHHHHHHHHHHHhcCCCCcchHHHHHH
Q 020588           95 RRA--YALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGV  170 (324)
Q Consensus        95 ~~g--~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~i~~~~~~l~l~~~~~l~~l~~~S~~  170 (324)
                      ++.  +.+..+...+..+......+...+..++.++        +++....+++.+.++ +....+--++...+...+
T Consensus        81 ~~~~~~~~~~i~~i~~~~~~~~~q~~~~~~~~~~~~--------gi~~~~~~~i~~~i~-~iYt~~GGl~av~~td~i  149 (406)
T PF00474_consen   81 SKALLRILAAIIIIVFMIPYLAAQLVGGGALLSVLF--------GIPYNTAILIVGVIV-IIYTFFGGLRAVAWTDFI  149 (406)
T ss_dssp             HHH-HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHT--------T--HHHHHHHHHHHH-HHTTCTT------SHHHH
T ss_pred             Cchhhhhhcccccchhhhhhhhccccccccchhhcc--------chhhhHHHHHHHHHH-HHhhhhhhHhhhhHHHHH
Confidence            988  6666666666666666677777776666542        133333344444433 344455566666666655

Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.

>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]

Probab=95.93  E-value=1.6  Score=42.96  Aligned_cols=192  Identities=12%  Similarity=0.129  Sum_probs=95.2

Q ss_pred             cccHHHHHHHHhCCCcch---hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccC----CC-----CCCchhhH--HHH
Q 020588           82 HIRYRDLAGHIYGRRAYA---LTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKD----DH-----TMKLPYFI--AIA  147 (324)
Q Consensus        82 ~~sy~~l~~~~~G~~g~~---~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~----~~-----~~~~~~~~--~i~  147 (324)
                      ..+|..+.|..||-+|..   +.+...-+.-+|.-+   =..+..+..++.+..+.    ++     ..+...++  +++
T Consensus       102 gIpFpv~~RaSFGi~Ga~~p~l~R~i~A~~WyGvqt---y~Gg~av~llL~~i~~~~~~~~~~~~~lg~tt~~~i~F~if  178 (497)
T COG1953         102 GIPFPVLSRASFGIYGANFPALIRAIVAIVWYGVQT---YAGGLAVNLLLGSIFPSLLIPNTLSPLLGLTTLELICFFIF  178 (497)
T ss_pred             CCCchHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH---HHhHHHHHHHHHHhccccccCCccccccCCcHHHHHHHHHH
Confidence            368999999999988754   333333334444432   23455555555553322    21     12444443  233


Q ss_pred             HHHHHHHHhcCCCCcchHHHHHHHHHHHHHHH-HHHhhh-hhccCccCCCCcCCCC---CCcchhhhhHHhhhhHHHHHh
Q 020588          148 GFVCALFAIGIPNLSALGVWLGVSTVLSTIYI-VIAIWL-SVRDGLKNPARDYSIP---GTTATKIFESIGACANLVFAF  222 (324)
Q Consensus       148 ~~~~~l~l~~~~~l~~l~~~S~~~~~~~~~~~-~i~i~~-~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~i~~faf  222 (324)
                      .++.  .++..+..+++|++-..+.......+ ..++.. .-.++..   ...+++   ...+...+.++.++...+=.|
T Consensus       179 W~l~--~l~~~~g~~~Ir~~~~~a~p~~~~~~~gl~Iw~~~~a~g~~---~~~~~p~~~~~~~~~~w~~~~~~~~~v~~~  253 (497)
T COG1953         179 WVLQ--LLVLFKGMESIRKFETWAGPLVYIAMLGLAIWALVKAGGSS---ILGELPAGTVSGSNSSWAFLAGIAAWVGFW  253 (497)
T ss_pred             HHHH--HHHHhcCHHHHHHHHHHhchHHHHHHHHHHHHHHHhcCCcC---ccccCCCCCCCcchhHHHHHHHHHHHHHHH
Confidence            3333  23334457888887766433222211 122221 1122211   011111   111222344444444444344


Q ss_pred             c--cCchhhhhccccCchhhhHHHHHHHHHHHHHHHHHHHhh----HHhhhcCCCc--ccccccCcCCc
Q 020588          223 N--TGMLPEIQATIRQPVVENMMKALYFQFSVGVLPMFAVTF----VGYWAYGNSS--SSYLLNNVSGP  283 (324)
Q Consensus       223 ~--h~~~~~i~~~m~~ps~~~~~~~~~~s~~~~~~~Y~~~g~----~gy~~fG~~~--~~~il~~~~~~  283 (324)
                      .  .-.+|..-+.-|+|+  .-.+.-.++.-+.+.+..++|+    ..+..||++.  +.++++++++.
T Consensus       254 Atl~lN~~DFsRfa~s~~--~~~~gq~~gLPv~~~l~~ligvv~tsa~~~lyG~~~w~P~di~~~~~~~  320 (497)
T COG1953         254 ATLALNIPDFTRFAKSQK--AQIWGQLVGLPVNFALFSLIGVVVTSASYILYGETIWDPLDIVARFLSG  320 (497)
T ss_pred             HHHhcCCchhhcccCChh--hhhhccchhhhHHHHHHHHHHhhHHHHHHHhhCcccCCHHHHHHHhccc
Confidence            4  577888888777773  3333323444455555545444    4688899985  45788888843

>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily

Probab=94.98  E-value=4.6  Score=40.70  Aligned_cols=148  Identities=16%  Similarity=0.052  Sum_probs=86.6

Q ss_pred             cCccccccccceeehhhhhhhccccc-cccchhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccccHHHH
Q 020588           10 SYFFHLEMLDSWFQVGFVLTTGINSA-YVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDL   88 (324)
Q Consensus        10 ~~~~~~~~~~s~~~~~~~l~~~~iG~-GiL~LP~a~~~~~G~i~g~i~li~~~~~~~yt~~lL~~~~~~~~~~~~sy~~l   88 (324)
                      +|-....|+.+++...+.+..+.+++ ..++.|-. ..+.|+- +................++.+-.++.|.  .|-.|.
T Consensus        25 ~dy~laGr~l~~~~~~~s~~At~~Sa~tflG~~g~-~y~~G~~-~~~~~~g~~~~~~~~~~~~~p~~rr~~~--~T~~e~  100 (552)
T TIGR03648        25 SEFYVAGRGVPPVANGMATAADWMSAASFISMAGL-IAFLGYD-GLAYLMGWTGGYVLLALLLAPYLRKFGK--YTVPDF  100 (552)
T ss_pred             HHHeeeCCCCchHHHHHHHHHHHHhHHHHHHHHHH-HHHhChH-HHHHHHHHHHHHHHHHHHHHHHHHHCCC--ccHHHH
Confidence            34444557788888888998888875 58889977 6777863 2111111111112234555555555443  577887


Q ss_pred             HHHHhCCC-cchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccCCCCCCchhhHHHHHHHHHHHHhcCCCCcchHHH
Q 020588           89 AGHIYGRR-AYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVW  167 (324)
Q Consensus        89 ~~~~~G~~-g~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~i~~~~~~l~l~~~~~l~~l~~~  167 (324)
                      -++=||++ .|.+..+...+..+......+...+..++.+.+        ++...-+++.++++ +.-..+--++...+.
T Consensus       101 l~~Rf~s~~~~~~~~i~~~~~~~~~l~~ql~~~~~~l~~~~g--------i~~~~~iii~~~i~-~iYt~~GG~~aV~~T  171 (552)
T TIGR03648       101 IGDRYYSNTARLVAVICAIFISFTYVAGQMRGVGVVFSRFLE--------VDFETGVFIGMAIV-FFYAVLGGMKGVTWT  171 (552)
T ss_pred             HHHHhCCCceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------CCHHHHHHHHHHHH-HHHHHhhhHHHHHHH
Confidence            77778866 477777777666776666667666666665532        22222233344433 334344456666666


Q ss_pred             HHH
Q 020588          168 LGV  170 (324)
Q Consensus       168 S~~  170 (324)
                      -.+
T Consensus       172 D~i  174 (552)
T TIGR03648       172 QVA  174 (552)
T ss_pred             HHH
Confidence            555

This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.

>PRK15419 proline:sodium symporter PutP; Provisional

Probab=94.83  E-value=4.7  Score=40.08  Aligned_cols=148  Identities=12%  Similarity=0.039  Sum_probs=76.7

Q ss_pred             Cccccccccceeehhhhhhhccccc-cccchhhhhhhccchhHHHHHHHHHHHHH-HHHHHHHH-HHhh--hcCcccccH
Q 020588           11 YFFHLEMLDSWFQVGFVLTTGINSA-YVLGYPGTVMVPLGWIAGVVGLIIATIVS-LNANALIA-KLHE--FGGKRHIRY   85 (324)
Q Consensus        11 ~~~~~~~~~s~~~~~~~l~~~~iG~-GiL~LP~a~~~~~G~i~g~i~li~~~~~~-~yt~~lL~-~~~~--~~~~~~~sy   85 (324)
                      |---..|+.+++...+.+..+.+++ ..++.|-. ..+.|+-. ... .+...+. .....++. |...  ....+..|-
T Consensus        34 dy~lagr~l~~~~~~~s~~At~~Sa~t~iG~~g~-~y~~G~~~-~~~-~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~T~  110 (502)
T PRK15419         34 DYILGGRSLGPFVTALSAGASDMSGWLLMGLPGA-VFLSGISE-SWI-AIGLTLGAWINWKLVAGRLRVHTEYNNNALTL  110 (502)
T ss_pred             HheeeCCCccHHHHHHHHHHHHHHHHHHHHhhHH-HHHcCHHH-HHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCceeH
Confidence            3334456778888888888888886 47889988 88888742 111 1111111 11112222 1111  111234688


Q ss_pred             HHHHHHHhCCCcchh---HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccCCCCCCchhhHHHHHHHHHHHHhcCCCCc
Q 020588           86 RDLAGHIYGRRAYAL---TWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLS  162 (324)
Q Consensus        86 ~~l~~~~~G~~g~~~---v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~i~~~~~~l~l~~~~~l~  162 (324)
                      .|.-++=||++.|.+   ..+...+..+.-+.+-+...+..++.++        +++...-+++.+.++ +.-..+--++
T Consensus       111 ~e~l~~Ry~~~~~~~~~~~~i~~~~~~~~~~~~ql~~~~~~l~~~~--------gi~~~~~iii~~~iv-~iYt~~GGl~  181 (502)
T PRK15419        111 PDYFTGRFEDKSRILRIISALVILLFFTIYCASGIVAGARLFESTF--------GMSYETALWAGAAAT-ILYTFIGGFL  181 (502)
T ss_pred             HHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------CCCHHHHHHHHHHHH-HHHHHhhhHH
Confidence            888888899765443   3333333333434444444555555442        123233333433433 3444455566


Q ss_pred             chHHHHHH
Q 020588          163 ALGVWLGV  170 (324)
Q Consensus       163 ~l~~~S~~  170 (324)
                      ...+.-.+
T Consensus       182 aV~~TD~i  189 (502)
T PRK15419        182 AVSWTDTV  189 (502)
T ss_pred             HHHHHHHH
Confidence            66666665

>TIGR00796 livcs branched-chain amino acid uptake carrier

Probab=94.12  E-value=1.1  Score=42.84  Aligned_cols=78  Identities=6%  Similarity=0.070  Sum_probs=56.1

Q ss_pred             ccHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccCCCCCCchhhHHHHHHHHHHHHhcCCCCc
Q 020588           83 IRYRDLAGHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLS  162 (324)
Q Consensus        83 ~sy~~l~~~~~G~~g~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~i~~~~~~l~l~~~~~l~  162 (324)
                      .-..+++++.||+.|+.+..+.+.+.|++++++.....+|.++.+..       ..+.+.|.++..... ...+.. .++
T Consensus       255 ~~l~~~a~~~~G~~G~~ll~i~v~lACLtT~iGli~~~a~~f~~~~~-------k~~y~~~v~~~~l~s-~~ia~~-Gl~  325 (378)
T TIGR00796       255 QILSAYSQHLFGSLGSFLLGLIITLACLTTAVGLTTACSEYFHKLVP-------KLSYKTWVIVFTLFS-FIVANL-GLT  325 (378)
T ss_pred             HHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------CCCHHHHHHHHHHHH-HHHHHh-CHH
Confidence            34778999999999999999999999999999999998888876521       255666766655544 222222 345


Q ss_pred             chHHHHH
Q 020588          163 ALGVWLG  169 (324)
Q Consensus       163 ~l~~~S~  169 (324)
                      ++-.++.
T Consensus       326 ~Ii~~~~  332 (378)
T TIGR00796       326 QIISISI  332 (378)
T ss_pred             HHHHHHH
Confidence            5444443

transmembrane helical spanners.

>TIGR00796 livcs branched-chain amino acid uptake carrier

Probab=93.89  E-value=6.3  Score=37.77  Aligned_cols=72  Identities=15%  Similarity=0.127  Sum_probs=42.8

Q ss_pred             hhhccccccccchhhhhhhccc--hhHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccccHHHHHHHHhCCCcchhHHHHH
Q 020588           28 LTTGINSAYVLGYPGTVMVPLG--WIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYGRRAYALTWGLQ  105 (324)
Q Consensus        28 l~~~~iG~GiL~LP~a~~~~~G--~i~g~i~li~~~~~~~yt~~lL~~~~~~~~~~~~sy~~l~~~~~G~~g~~~v~~~~  105 (324)
                      +..-.+|+|-|-.|-.+-.+.|  |.++.+..++.++..-.-+..   +..+.|   -+|+++.++ +||+...+....+
T Consensus         4 lFamffGAGNlIfPp~lG~~aG~~~~~a~lgf~ltgV~lpllgl~---av~~~g---G~~~~l~~~-~g~~f~~lf~~~~   76 (378)
T TIGR00796         4 LFALFFGAGNIIFPPMLGLAAGEHVWTAALGFLLTGVGLPLLGLI---ALALVG---GGYDSLSAR-IGKVFGILFTVIL   76 (378)
T ss_pred             HHHHHHhhhHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHh---eeeecC---CCHHHHHHH-hChHHHHHHHHHH
Confidence            3445689998888866444444  556666666666555444333   211222   268998885 7777766655554


Q ss_pred             H
Q 020588          106 Y  106 (324)
Q Consensus       106 ~  106 (324)
                      +
T Consensus        77 ~   77 (378)
T TIGR00796        77 Y   77 (378)
T ss_pred             H
Confidence            4

transmembrane helical spanners.

>PRK15015 carbon starvation protein A; Provisional

Probab=93.42  E-value=0.68  Score=46.85  Aligned_cols=100  Identities=15%  Similarity=0.079  Sum_probs=70.1

Q ss_pred             cceeehhhhhhhccccccccchhhhhhhccchhHHHHHHHHHH----HHHHHHHHHHHHHhhhcCcccccHHHHHHHHhC
Q 020588           19 DSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIAT----IVSLNANALIAKLHEFGGKRHIRYRDLAGHIYG   94 (324)
Q Consensus        19 ~s~~~~~~~l~~~~iG~GiL~LP~a~~~~~G~i~g~i~li~~~----~~~~yt~~lL~~~~~~~~~~~~sy~~l~~~~~G   94 (324)
                      ..-+--.-|=..++-|+|-+-=|.- ..+.||.|+.+-.++-.    .+-.|.....  ..|+.|   +|..|++++..|
T Consensus        83 t~k~VLfGHHFasIAGAGPivGPvl-Aa~~GwlP~~LWIl~G~vf~GaVhD~~~L~~--S~R~~G---rSig~ia~~~iG  156 (701)
T PRK15015         83 TDKKVLFGHHFAAIAGAGPLVGPVL-AAQMGYLPGMIWLLAGVVLAGAVQDFMVLFV--STRRDG---RSLGELVKEEMG  156 (701)
T ss_pred             CCccchhHHHHHHHhccCccHHHHH-HHHHcchHHHHHHHHcceeechhhhhhheee--eecCCC---ccHHHHHHHHhh
Confidence            3334445577789999999999998 89999999998876532    2222222211  222333   389999999999


Q ss_pred             CCcchhHHHHHHHHHHHHHHHHHHHHHhhH
Q 020588           95 RRAYALTWGLQYVNLFMINTGYIILAGQAL  124 (324)
Q Consensus        95 ~~g~~~v~~~~~~~~~g~~i~y~i~~~~~l  124 (324)
                      |+++.+..+...+.+.-..-++..+..+.+
T Consensus       157 ~~~~~lfli~i~~iliiviAvfalvvv~al  186 (701)
T PRK15015        157 PTAGVIALVACFMIMVIILAVLAMIVVKAL  186 (701)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999998888877777766666655555555

>COG4147 DhlC Predicted symporter [General function prediction only]

Probab=92.82  E-value=10  Score=37.15  Aligned_cols=231  Identities=17%  Similarity=0.157  Sum_probs=121.6

Q ss_pred             ceeehhhhhhhcccc-ccccchhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHH--hhhcCcccccHHH-HHHHHhCC
Q 020588           20 SWFQVGFVLTTGINS-AYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKL--HEFGGKRHIRYRD-LAGHIYGR   95 (324)
Q Consensus        20 s~~~~~~~l~~~~iG-~GiL~LP~a~~~~~G~i~g~i~li~~~~~~~yt~~lL~~~--~~~~~~~~~sy~~-l~~~~~G~   95 (324)
                      +-+|.-+-+.+..+- ++.|++|-. ..-.|+ .|.+..+  |+..-|....++-+  .|..||  .|.+| ++++.--+
T Consensus        44 ~~fqNGlAiagdyMSaASflGiag~-I~~~GY-dG~~Y~i--G~~~Gy~i~~fL~A~~LRk~Gk--yT~aD~~a~Ry~~~  117 (529)
T COG4147          44 TGFQNGLAIAGDYMSAASFLGIAGL-IFISGY-DGLIYSI--GWTGGYPILLFLIAEYLRKLGK--YTFADFIADRYKSN  117 (529)
T ss_pred             cccccceehhccccchHhhhchhHh-hhhccc-chHHHHH--HHHHHHHHHHHHHHHHHHhcCC--cchHHHHHHHHhcc
Confidence            444444445555544 567888877 777775 4555543  44444444444333  444555  58899 55665556


Q ss_pred             CcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccCCCCCCchhhHHHHHHHHHHHHhcCCCCcchHHHHHH-HHHH
Q 020588           96 RAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGV-STVL  174 (324)
Q Consensus        96 ~g~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~i~~~~~~l~l~~~~~l~~l~~~S~~-~~~~  174 (324)
                      +.|++..+.-++..+--.++.+...|..+..+++.        +...-+++.+.++ +....+--++...|...+ +.+.
T Consensus       118 ~~R~~aa~~ti~vs~~YliaQmvGaG~li~~l~gv--------~~~vgv~ig~ilm-~~Yvv~GGM~atTW~Qi~qavlL  188 (529)
T COG4147         118 PARLLAAIGTIIVSFLYLIAQMVGAGLLISLLLGV--------PYHVGVVIGGILM-MVYVVLGGMKATTWVQIIQAVLL  188 (529)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCC--------CceeehhhHhHHH-HHHHHhcchhhhhHHHHHHHHHH
Confidence            77888888877777777888888888888776431        1111122333332 344455678888888887 3333


Q ss_pred             HHHHHHHHhhhhhcc-Ccc---------CCCCc----CCCCCCcchhhhhHHhhhhHHHHHhccCchhhh-hccccCchh
Q 020588          175 STIYIVIAIWLSVRD-GLK---------NPARD----YSIPGTTATKIFESIGACANLVFAFNTGMLPEI-QATIRQPVV  239 (324)
Q Consensus       175 ~~~~~~i~i~~~~~~-~~~---------~~~~~----~~~~~~~~~~~~~~~~a~~i~~faf~h~~~~~i-~~~m~~ps~  239 (324)
                      .+.+.+..+.+.... +..         .++.+    ...++....+..+++.-.-...+..  .-+|-+ .+--.-|+.
T Consensus       189 i~a~~i~ai~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~pGl~~~~~i~~isl~~aLm~GT--AgLPHil~RFfTvp~~  266 (529)
T COG4147         189 IVAALIMAIMIMWKLGGNPNPLFAEAVTVHPKDDGSDIMEPGLLYKDPIDFISLGFALMVGT--AGLPHILMRFFTVPDA  266 (529)
T ss_pred             HHHHHHHHHHHHHHHcCCcchHHHHHhhcCcccCcccccCCCCcccCHHHHHHHHHHHHHcc--CCCCeEEEEEEecCcH
Confidence            333333333322111 111         11110    0001111111122221111122222  222211 122234556


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhhHHhhh
Q 020588          240 ENMMKALYFQFSVGVLPMFAVTFVGYWA  267 (324)
Q Consensus       240 ~~~~~~~~~s~~~~~~~Y~~~g~~gy~~  267 (324)
                      |+-||++.++..+...+|+..-..|+.+
T Consensus       267 k~AR~Sv~wA~~fIg~fYi~~~~ig~~A  294 (529)
T COG4147         267 KEARKSVFWATGFIGIFYILTPIIGAGA  294 (529)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7788899999999999999876666543

>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]

Probab=92.79  E-value=10  Score=37.75  Aligned_cols=47  Identities=2%  Similarity=0.088  Sum_probs=26.9

Q ss_pred             cCchhhhhccccCchhhhHHHHHHHHHHHHHHHHHHHhhHHhhhcCCC
Q 020588          224 TGMLPEIQATIRQPVVENMMKALYFQFSVGVLPMFAVTFVGYWAYGNS  271 (324)
Q Consensus       224 h~~~~~i~~~m~~ps~~~~~~~~~~s~~~~~~~Y~~~g~~gy~~fG~~  271 (324)
                      ...-+-+-+|-||++ ++-+|++..+..+..++=...-+.-..+-++|
T Consensus       268 yDa~~H~aEE~~nAs-k~aPrgIi~s~~i~~i~gw~~~I~i~~~i~~D  314 (550)
T KOG1289|consen  268 YDAAAHMAEETKNAS-KAAPRGIISSIAIGFILGWIIIIGIAYTIPDD  314 (550)
T ss_pred             cCchHHHHHHhcchh-hhccHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence            344455667778887 46777777666665554433333334444443

>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups

Probab=91.97  E-value=5.7  Score=38.50  Aligned_cols=167  Identities=13%  Similarity=0.052  Sum_probs=82.8

Q ss_pred             Cccccccccceeehhhhhhhcccccc-ccchhhhhhhccchhHHHHHHHHH---HHHHHHHHHHHHHHhhhcCcccccHH
Q 020588           11 YFFHLEMLDSWFQVGFVLTTGINSAY-VLGYPGTVMVPLGWIAGVVGLIIA---TIVSLNANALIAKLHEFGGKRHIRYR   86 (324)
Q Consensus        11 ~~~~~~~~~s~~~~~~~l~~~~iG~G-iL~LP~a~~~~~G~i~g~i~li~~---~~~~~yt~~lL~~~~~~~~~~~~sy~   86 (324)
                      ++.+++++.|-+|+.+.-+.+.+|.| +.+..-| ....|= -+++-+-++   +..+-|+=-.|..-+|+.+++ -+|.
T Consensus        11 ~~~~~~g~iS~fqA~~~ala~~vG~GNI~GVa~A-I~~GGP-GAiFWMWi~a~~Gmatk~~E~~La~~yR~~~~~-G~~~   87 (416)
T PF01235_consen   11 KKKEEEGGISPFQALCTALAGTVGTGNIAGVATA-IAIGGP-GAIFWMWISALLGMATKYAEVTLAQKYREKDED-GEYR   87 (416)
T ss_pred             CCCCCCCCcChHHHHHHHHHhccCcchHHHHHHH-HHhhch-hHHHHHHHHHHHHHHHHHHHHHHHHHheEECCC-CCEe
Confidence            34455556799999999999999998 8889988 877772 233333333   334445555555555432221 1222


Q ss_pred             H----HHHHHhCCCc-chhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccCCCCCCchhhHHHHHHHHHHHHhcCCCC
Q 020588           87 D----LAGHIYGRRA-YALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNL  161 (324)
Q Consensus        87 ~----l~~~~~G~~g-~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~i~~~~~~l~l~~~~~l  161 (324)
                      .    ..++.+|+|+ ..+..++ .+..+|.  .....-.+++....+.    ..+++.....++.++++  .+..+..+
T Consensus        88 GGP~yyi~~gl~~k~la~~fai~-~~~~~~~--~~~~~Q~nsi~~~~~~----~f~i~~~~~gi~l~~l~--~~vi~GGi  158 (416)
T PF01235_consen   88 GGPMYYIEKGLGSKWLAILFAIF-LIIAFGI--GFNMVQANSIADALSS----AFGIPPWITGIILAILV--ALVIFGGI  158 (416)
T ss_pred             ecHHHHHHHHhccchHHHHHHHH-HHHHHHh--hhhHHHHHHHHHHHHh----hccccHHHHHHHHHHHH--HHHHHcch
Confidence            2    4455666443 3333333 1122221  1111112222222211    11233222223333332  33344567


Q ss_pred             cchHHHHH-HHHHHHHHHHHHHhhhhhcc
Q 020588          162 SALGVWLG-VSTVLSTIYIVIAIWLSVRD  189 (324)
Q Consensus       162 ~~l~~~S~-~~~~~~~~~~~i~i~~~~~~  189 (324)
                      |+++.++. +.-++.+.|.+..+++-+.+
T Consensus       159 krI~~v~~~lVP~Ma~~Yi~~~l~ii~~n  187 (416)
T PF01235_consen  159 KRIAKVSEKLVPFMAILYILGGLIIIIIN  187 (416)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            77776655 35566777776666554443

One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane

>TIGR02121 Na_Pro_sym sodium/proline symporter

Probab=90.96  E-value=18  Score=35.85  Aligned_cols=144  Identities=13%  Similarity=0.094  Sum_probs=73.9

Q ss_pred             ccccceeehhhhhhhccccc-cccchhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHH-hhhc--CcccccHHHHHHH
Q 020588           16 EMLDSWFQVGFVLTTGINSA-YVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKL-HEFG--GKRHIRYRDLAGH   91 (324)
Q Consensus        16 ~~~~s~~~~~~~l~~~~iG~-GiL~LP~a~~~~~G~i~g~i~li~~~~~~~yt~~lL~~~-~~~~--~~~~~sy~~l~~~   91 (324)
                      .|+.+++...+.+..+.+++ -.++.|-. ..+.|+.. .................+.+- ++..  +.+..|-.|.-++
T Consensus        35 gr~~~~~~~~~s~~At~~s~~~~~G~~g~-~y~~G~~~-~~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~T~~e~l~~  112 (487)
T TIGR02121        35 GRSLGPFVTALSAGASDMSGWLLMGLPGA-LYVTGLSE-LWIAIGLTIGAYINWKFVAPRLRVYTEAAHNSITLPDFFEN  112 (487)
T ss_pred             CCcccHHHHHHHHHHHHHhHHHHHhhHHH-HHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCccHHHHHHH
Confidence            46667887888887777775 47888977 67778742 222211111122223333332 2211  1234688999999


Q ss_pred             HhCCCcchh---HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccCCCCCCchhhHHHHHHHHHHHHhcCCCCcchHHHH
Q 020588           92 IYGRRAYAL---TWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWL  168 (324)
Q Consensus        92 ~~G~~g~~~---v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~i~~~~~~l~l~~~~~l~~l~~~S  168 (324)
                      =||++.|.+   ..+...+....-....+...+..++.+++        ++...-+++.++++ +.-...--++...+.-
T Consensus       113 Ryg~~~~~~~~~~ai~~~~~~~~~~~~~l~~~~~~l~~~~g--------i~~~~~iii~~~i~-~~Yt~~GGl~av~~TD  183 (487)
T TIGR02121       113 RFNDKSRLLRIISALIILVFFTIYTSSGLVAGGKLFESTFG--------LDYKTGLLIGALII-VIYTFFGGFLAVSWTD  183 (487)
T ss_pred             HhCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------ccHHHHHHHHHHHH-HHHHHhhhHHHHHHHH
Confidence            999765543   33333333333344444555555554421        22222233333333 3343444566666665


Q ss_pred             HH
Q 020588          169 GV  170 (324)
Q Consensus       169 ~~  170 (324)
                      .+
T Consensus       184 ~i  185 (487)
T TIGR02121       184 FV  185 (487)
T ss_pred             HH
Confidence            55

This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.

>PRK10484 putative transporter; Provisional

Probab=90.19  E-value=21  Score=35.60  Aligned_cols=97  Identities=11%  Similarity=-0.018  Sum_probs=57.5

Q ss_pred             cCccccccccceeehhhhhhhccccc-cccchhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccccHHHH
Q 020588           10 SYFFHLEMLDSWFQVGFVLTTGINSA-YVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDL   88 (324)
Q Consensus        10 ~~~~~~~~~~s~~~~~~~l~~~~iG~-GiL~LP~a~~~~~G~i~g~i~li~~~~~~~yt~~lL~~~~~~~~~~~~sy~~l   88 (324)
                      +|-.-..|+.+++-..+.+..+.+++ ..++.|-. ..+.|+...... ............++.+-.++.  +..|-.|.
T Consensus        31 ~dyflagR~l~~~~~~~sl~AT~~Sa~tflG~~g~-~y~~G~~~~~~~-~~~~~~~~~~~~~~~p~~~r~--~~~T~~e~  106 (523)
T PRK10484         31 DGYFLAGRSLTGPVIAGSLLLTNLSTEQLVGLNGQ-AYASGMSVMAWE-VTAAIALIILALIFLPRYLKS--GITTIPDF  106 (523)
T ss_pred             hhheecCCCCchHHHHHHHHHHHhhHHHHhcchHH-HHHhCHHHHHHH-HHHHHHHHHHHHHHHHHHHhc--CCccHHHH
Confidence            33344457778888888888887775 58889987 777786421111 111111112233333333333  34688999


Q ss_pred             HHHHhCCCcchhHHHHHHHHHH
Q 020588           89 AGHIYGRRAYALTWGLQYVNLF  110 (324)
Q Consensus        89 ~~~~~G~~g~~~v~~~~~~~~~  110 (324)
                      -++-||++.+.+......+...
T Consensus       107 l~~Ryg~~~~~~~~~~~~i~~~  128 (523)
T PRK10484        107 LEERYDKTTRRIVSILFLIGYV  128 (523)
T ss_pred             HHHhcCchhHHHHHHHHHHHHH
Confidence            9999999888776665444433

>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms]

Probab=89.98  E-value=1.1  Score=44.52  Aligned_cols=102  Identities=15%  Similarity=0.212  Sum_probs=71.1

Q ss_pred             ccceeehhhhhhhccccccccchhhhhhhccchhHHHHHHHHHHHH----HHHHHHHHHHHhhhcCcccccHHHHHHHHh
Q 020588           18 LDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIV----SLNANALIAKLHEFGGKRHIRYRDLAGHIY   93 (324)
Q Consensus        18 ~~s~~~~~~~l~~~~iG~GiL~LP~a~~~~~G~i~g~i~li~~~~~----~~yt~~lL~~~~~~~~~~~~sy~~l~~~~~   93 (324)
                      ..+.+...-|=..++-|+|-+-=|.- .+|.||.+|.+-+++-+++    -.|...++  -.|+.|   .|-.|++++.+
T Consensus        51 Ptnk~vlfGhHFaaIAGAGPivGPvl-AAq~G~Lp~~LWIl~G~VfaGaVhD~~~L~~--SvR~~G---~Si~~ia~~~l  124 (575)
T COG1966          51 PTNKWVLFGHHFASIAGAGPIVGPAL-AAQYGWLPAFLWILLGCVFAGAVHDYFSLML--SVRHGG---KSIGEIAGKYL  124 (575)
T ss_pred             cCCchhhhHHHHHHHhccCcchhHHH-HHHhcCcHHHHHHHHhhhhhhhhhhhhheee--eeccCC---ccHHHHHHHHh
Confidence            45666677777889999999999998 9999999999887653322    22222211  122333   38999999999


Q ss_pred             CCCcchhHHHHHHHHHHHHHHHHHHHHHhhHH
Q 020588           94 GRRAYALTWGLQYVNLFMINTGYIILAGQALK  125 (324)
Q Consensus        94 G~~g~~~v~~~~~~~~~g~~i~y~i~~~~~l~  125 (324)
                      |++.+.+..+...+..+-..........+.+.
T Consensus       125 G~~a~~~~~~~~l~iliiv~Avfa~vv~~~l~  156 (575)
T COG1966         125 GRTAKVFFLLLALILLILVGAVFAAVIAKLLA  156 (575)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999888887777666555555544444443

>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V))

Probab=87.49  E-value=6.3  Score=38.34  Aligned_cols=61  Identities=13%  Similarity=0.249  Sum_probs=51.4

Q ss_pred             cHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccCCCCCCchhhHHHHHHHH
Q 020588           84 RYRDLAGHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVC  151 (324)
Q Consensus        84 sy~~l~~~~~G~~g~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~i~~~~~  151 (324)
                      -..+++++.+|+.|+.+..+.+.+-|+-++++-....+|.++...+       ..+.+.|..+++.+-
T Consensus       262 lL~~i~~~~~G~~G~~ll~iiv~lACLTTaIGL~~a~a~yf~~~~~-------kisY~~~v~i~~i~S  322 (427)
T PF05525_consen  262 LLSQIANHLFGSAGQILLGIIVFLACLTTAIGLISACAEYFSELFP-------KISYKVWVIIFTIFS  322 (427)
T ss_pred             HHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------ccChHHHHHHHHHHH
Confidence            3677999999999999999999999999999999999999988743       356677777665544

They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane

>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]

Probab=86.58  E-value=33  Score=33.42  Aligned_cols=109  Identities=13%  Similarity=0.075  Sum_probs=65.0

Q ss_pred             ccceeehhhhhhhcccccc-ccchhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhh-hcCc--ccccHHHHHHHHh
Q 020588           18 LDSWFQVGFVLTTGINSAY-VLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHE-FGGK--RHIRYRDLAGHIY   93 (324)
Q Consensus        18 ~~s~~~~~~~l~~~~iG~G-iL~LP~a~~~~~G~i~g~i~li~~~~~~~yt~~lL~~~~~-~~~~--~~~sy~~l~~~~~   93 (324)
                      -.|-.+-.+.-+++.+|.| +.-.||- ..+.|=. +.++.-++..+..=--.++.|-.- +.++  ...+|+.++.   
T Consensus         8 w~SrlGFILAa~GsAVGLGNiWrFPy~-~~~nGGg-AFll~yli~~l~~GiPlli~Ef~iGr~~~~~~~~a~~~l~~---   82 (439)
T COG0733           8 WSSRLGFILAAAGSAVGLGNIWRFPYM-AGENGGG-AFLLPYLIFLLLVGIPLLLAEFAIGRRGRKNAVGAFRKLAP---   82 (439)
T ss_pred             hhhHHHHHHHHHHHHhcccccccCCeE-eeecCcc-hHHHHHHHHHHHHhHHHHHHHHHhhhhcCCChhHHHHHhcc---
Confidence            3445555666789999988 9999998 7666632 223322333444433445555422 2122  1235666555   


Q ss_pred             CCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhc
Q 020588           94 GRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFW  132 (324)
Q Consensus        94 G~~g~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~  132 (324)
                       ++....+.....+..+..+.-|.++.|=.+..+..+..
T Consensus        83 -~~~~~~~G~~gv~~~~~i~sfYsvI~GWil~Y~~~s~t  120 (439)
T COG0733          83 -KKKWEWIGWFGVLGGFLILSFYSVIGGWILSYLVKSLT  120 (439)
T ss_pred             -CccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence             34444455566677777888898888888887776643

>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2

Probab=85.59  E-value=33  Score=32.39  Aligned_cols=88  Identities=19%  Similarity=0.214  Sum_probs=55.1

Q ss_pred             HHHHhhhcCcccccHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccCCCCCCchhhHHHHHHH
Q 020588           71 IAKLHEFGGKRHIRYRDLAGHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFV  150 (324)
Q Consensus        71 L~~~~~~~~~~~~sy~~l~~~~~G~~g~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~i~~~~  150 (324)
                      -.|....+|+   +..|..++-+||+..+...+...+.......+-+...+.-++.++        +++...+.++.++.
T Consensus        33 ~~R~~~~Tg~---~l~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~g~a~al~ll~--------g~~~~~~~~~~~~~  101 (358)
T PF01566_consen   33 AARLGIVTGK---GLAEGIRERFGRGWAWFLWILIFLANIATQAAEIIGIAIALNLLF--------GIPLWIWVLLVAVI  101 (358)
T ss_pred             HHHHhhhcCC---ChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--------CCCcHHHHHHHHHH
Confidence            3333334554   568888888999988888888888777777776666666665442        23445555555554


Q ss_pred             HHHHHhc--CCCCcchHHHHHH
Q 020588          151 CALFAIG--IPNLSALGVWLGV  170 (324)
Q Consensus       151 ~~l~l~~--~~~l~~l~~~S~~  170 (324)
                      + +.+..  .++.|.+..+...
T Consensus       102 ~-~~ll~~~~~~y~~~E~~~~~  122 (358)
T PF01566_consen  102 A-ILLLWLSSGGYRRLERILKV  122 (358)
T ss_pred             H-HHHHHHHhccchHHHHHHHH
Confidence            4 23323  4567777666553

The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane

>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]

Probab=84.35  E-value=17  Score=35.44  Aligned_cols=160  Identities=14%  Similarity=0.041  Sum_probs=80.7

Q ss_pred             ccccccceeehhhhhhhcccccc-ccchhhhhhhccchhHHHHH---HHHHHHHHHHHHHHHHHHhhhcCcccccHHH--
Q 020588           14 HLEMLDSWFQVGFVLTTGINSAY-VLGYPGTVMVPLGWIAGVVG---LIIATIVSLNANALIAKLHEFGGKRHIRYRD--   87 (324)
Q Consensus        14 ~~~~~~s~~~~~~~l~~~~iG~G-iL~LP~a~~~~~G~i~g~i~---li~~~~~~~yt~~lL~~~~~~~~~~~~sy~~--   87 (324)
                      ++++..|.+|+.+.-+.+.+|+| +-+.+-| .+..|= -+++-   ..+.|..+-|.=-.|.+-+++.++ +-+|.+  
T Consensus        58 ~~~~~vS~FqAl~~sla~~VGtGNIaGVAtA-I~~GGP-GAvFWMWi~Al~Gmat~f~E~~La~~Yr~kd~-~G~~~GGP  134 (452)
T COG1115          58 AGKGGVSSFQALMTSLAARVGTGNIAGVATA-IALGGP-GAVFWMWIVALFGMATKFAESTLAQKYRVKDK-DGEYRGGP  134 (452)
T ss_pred             CCCCCcChHHHHHHHHHhccCcchHHHHHHH-HHcCCC-ccHHHHHHHHHHHHHHHHHHHHHHhheeEeCC-CCCCcCCh
Confidence            45556699999999999999999 8888888 888771 12221   223455666666666666553322 223443  


Q ss_pred             --HHHHHhCC-CcchhHHHHHHHHHHH--HHHHHHHHHHhhHHHHHHHhccCCCCCCchhhHHHHHHHHHHHHhcCCCCc
Q 020588           88 --LAGHIYGR-RAYALTWGLQYVNLFM--INTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLS  162 (324)
Q Consensus        88 --l~~~~~G~-~g~~~v~~~~~~~~~g--~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~i~~~~~~l~l~~~~~l~  162 (324)
                        --++-+|. |...+.. ...+..+|  .+....-..++.++.-   +     +.+...-.++.+++.  -+..+..+|
T Consensus       135 ~yYi~kGl~~r~l~v~FA-~~li~afg~i~n~vQ~NsIa~a~~~a---f-----~~~~~~~gi~la~l~--~~VI~GGi~  203 (452)
T COG1115         135 AYYIEKGLGMRWLAVLFA-FALIAAFGFIGNGVQSNSIASALANA---F-----GIPPLVTGIVLALLV--ALVIFGGIK  203 (452)
T ss_pred             HHHHHhhcCCcHHHHHHH-HHHHHHHHhhcchhhHHHHHHHHHHh---c-----CCcHHHHHHHHHHHH--HHHHHcchH
Confidence              23344442 2233333 22222222  2222222222222211   2     122222222333322  333456778


Q ss_pred             chHHHHHH-HHHHHHHHHHHHhhhhh
Q 020588          163 ALGVWLGV-STVLSTIYIVIAIWLSV  187 (324)
Q Consensus       163 ~l~~~S~~-~~~~~~~~~~i~i~~~~  187 (324)
                      +++.++.. --++...|+...+++-+
T Consensus       204 rIa~v~~~vVPfMA~~Yi~~~~~Ii~  229 (452)
T COG1115         204 RIAKVSSKVVPFMAILYVLVALVIIV  229 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88877765 34566666665555433

>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism]

Probab=84.20  E-value=2.5  Score=43.15  Aligned_cols=33  Identities=12%  Similarity=0.278  Sum_probs=27.2

Q ss_pred             hhccccCchhhhHHHHHHHHHHHHHHHHHHHhhH
Q 020588          230 IQATIRQPVVENMMKALYFQFSVGVLPMFAVTFV  263 (324)
Q Consensus       230 i~~~m~~ps~~~~~~~~~~s~~~~~~~Y~~~g~~  263 (324)
                      .-.|+|+|| |..+|....+.+..+.+|+++.+.
T Consensus       316 MSgELk~PS-kSIP~GTl~ava~Tf~~Yvl~~fl  348 (945)
T KOG1288|consen  316 MSGELKAPS-KSIPKGTLSAVAFTFFVYVLVIFL  348 (945)
T ss_pred             cCccccCcc-ccCCccchHHHHHHHHHHHHHHHH
Confidence            346789998 578999999999999999887664

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	324
3l1l_A	445	Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC	99.37
3gia_A	444	Uncharacterized protein MJ0609; membrane protein,	99.09
4djk_A	511	Probable glutamate/gamma-aminobutyrate antiporter;	98.72
2jln_A	501	MHP1; hydantoin, transporter, membrane protein, nu	98.25
3dh4_A	530	Sodium/glucose cotransporter; membrane protein, sy	94.85
2xq2_A	593	Sodium/glucose cotransporter; transport protein, i	93.3
2a65_A	519	Leutaa, Na(+):neurotransmitter symporter (SNF fami	91.46

>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A

Probab=99.37  E-value=2.9e-11  Score=115.73  Aligned_cols=249  Identities=13%  Similarity=0.010  Sum_probs=150.5

Q ss_pred             cccccccceeehhhhhhhccccccccchhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccccHHHHHHHH
Q 020588           13 FHLEMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHI   92 (324)
Q Consensus        13 ~~~~~~~s~~~~~~~l~~~~iG~GiL~LP~a~~~~~G~i~g~i~li~~~~~~~yt~~lL~~~~~~~~~~~~sy~~l~~~~   92 (324)
                      .+++|+.+.++..+..+++++|+|++.+|.. ..+.|. .+++..++.++.+..+.....|...+..+ .-+.-+.+++.
T Consensus         4 ~~~~r~l~~~~~~~l~ig~~iG~Gif~~~~~-~~~~G~-~~~~~~li~~~~~~~~a~~~~el~~~~p~-~Gg~y~~~~~~   80 (445)
T 3l1l_A            4 DADAHKVGLIPVTLMVSGAIMGSGVFLLPAN-LASTGG-IAIYGWLVTIIGALGLSMVYAKMSFLDPS-PGGSYAYARRC   80 (445)
T ss_dssp             ---CCCBCHHHHHHHHHHHHCSSHHHHHHHH-HHHHCT-HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-TTTHHHHHHHH
T ss_pred             CCCCCcccHHHHHHHHHHhHHhhhHHhhHHH-HHHhhh-HHHHHHHHHHHHHHHHHHHHHHHHccCCC-CCCchhhHHhH
Confidence            3466788999999999999999999999998 888886 47778888888888888888887554322 12455667899


Q ss_pred             hCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccCCCCCCchhhHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 020588           93 YGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVST  172 (324)
Q Consensus        93 ~G~~g~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~i~~~~~~l~l~~~~~l~~l~~~S~~~~  172 (324)
                      +||+.+++......+.......++....++.+...++.     ...+...+.+....+.+....-.+..|..+++..+..
T Consensus        81 ~G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~  155 (445)
T 3l1l_A           81 FGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPI-----LKDPWVLTITCVVVLWIFVLLNIVGPKMITRVQAVAT  155 (445)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGG-----GGSHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcc-----ccccHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHH
Confidence            99999988888877776666666666655555432111     0001112222111111111111233455555544432


Q ss_pred             HHHHHHHHHHhhhhhccCccCCCCcCCCCCCcchhhhhHHhhhhHHHHHhc-cCchhhhhccccCchhhhHHHHHHHHHH
Q 020588          173 VLSTIYIVIAIWLSVRDGLKNPARDYSIPGTTATKIFESIGACANLVFAFN-TGMLPEIQATIRQPVVENMMKALYFQFS  251 (324)
Q Consensus       173 ~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~faf~-h~~~~~i~~~m~~ps~~~~~~~~~~s~~  251 (324)
                      ...+...++.++..+.+...+ ....+.......++.++..++....|+|. ........+|+|||+ |+.+|+...+..
T Consensus       156 ~~~i~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~-r~ip~a~~~~~~  233 (445)
T 3l1l_A          156 VLALIPIVGIAVFGWFWFRGE-TYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPK-RNVPIATIGGVL  233 (445)
T ss_dssp             HHHHHHHHHHHHTTSTTCCCC-CCCCC-----------HHHHHHHHHHTTTTTTHHHHGGGGBSSHH-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhChh-hcccccCccCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCcc-ccccHHHHHHHH
Confidence            222222222222222221110 11111111111224467788889999997 888888999999995 689999999999


Q ss_pred             HHHHHHHHHhhHHhhhcCCC
Q 020588          252 VGVLPMFAVTFVGYWAYGNS  271 (324)
Q Consensus       252 ~~~~~Y~~~g~~gy~~fG~~  271 (324)
                      ++.++|+..........+.+
T Consensus       234 ~~~~~y~~~~~~~~~~~~~~  253 (445)
T 3l1l_A          234 IAAVCYVLSTTAIMGMIPNA  253 (445)
T ss_dssp             HHHHHHHHHHHHHHHHSCTT
T ss_pred             HHHHHHHHHHHHHHhcCCHH
Confidence            99999999877766666543

>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C

Probab=99.09  E-value=6.6e-09  Score=99.35  Aligned_cols=240  Identities=12%  Similarity=0.023  Sum_probs=142.6

Q ss_pred             cccccceeehhhhhhhccccccccchhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccccHHHHHHHHhC
Q 020588           15 LEMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYG   94 (324)
Q Consensus        15 ~~~~~s~~~~~~~l~~~~iG~GiL~LP~a~~~~~G~i~g~i~li~~~~~~~yt~~lL~~~~~~~~~~~~sy~~l~~~~~G   94 (324)
                      ++|+.+.++..+..+++++|+|++.+|..+....|- .+++..++.+.++..+...+.|...+..+. -..-+.+++.+|
T Consensus         4 ~~r~l~~~~~~~l~~g~~iG~gi~~~~~~~~~~~G~-~~~~~~li~~~~~~~~~~~~~el~~~~P~~-Gg~y~~~~~~~G   81 (444)
T 3gia_A            4 KNKKLSLWEAVSMAVGVMIGASIFSIFGVGAKIAGR-NLPETFILSGIYALLVAYSYTKLGAKIVSN-AGPIAFIHKAIG   81 (444)
T ss_dssp             CCCCBCHHHHHHHHHHHHHHHHTTTSHHHHHHHHGG-GHHHHHHHHHHHHHHHHHHHHHHHTTCCCT-TTHHHHHHHHHC
T ss_pred             cCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHHHhhCCCC-CcHHHhHHHHhC
Confidence            567889999999999999999999988552566665 677778888888888888888875532221 234567888999


Q ss_pred             CC--cchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccCCCCCCchhhHHHHHHHH--HHHHhcCCCCcchHHHHHH
Q 020588           95 RR--AYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVC--ALFAIGIPNLSALGVWLGV  170 (324)
Q Consensus        95 ~~--g~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~i~~~~~--~l~l~~~~~l~~l~~~S~~  170 (324)
                      |+  +.+ +.....+.....+..+....++.+...+   .  ..  ....+..+.+.++  ++...-.+..|..+++..+
T Consensus        82 ~~~~~g~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~---~--~~--~~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~~  153 (444)
T 3gia_A           82 DNIITGA-LSILLWMSYVISIALFAKGFAGYFLPLI---N--AP--INTFNIAITEIGIVAFFTALNFFGSKAVGRAEFF  153 (444)
T ss_dssp             SSHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHT---T--CC--CCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred             cchHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHh---C--CC--CchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            97  232 2333344444445555555556555432   1  11  1122211111111  0111122334555555444


Q ss_pred             HHHHHHHHHHHHhhhhhccCccCCCCcCCCCCCcchhhhhHHhhhhHHHHHhc-cCchhhhhccccCchhhhHHHHHHHH
Q 020588          171 STVLSTIYIVIAIWLSVRDGLKNPARDYSIPGTTATKIFESIGACANLVFAFN-TGMLPEIQATIRQPVVENMMKALYFQ  249 (324)
Q Consensus       171 ~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~faf~-h~~~~~i~~~m~~ps~~~~~~~~~~s  249 (324)
                      .....+...++.++..+.+...  + +.. +..++.++.+++.+.....|+|. +......-+|+|||+ |+.+|+...+
T Consensus       154 ~~~~~i~~~~~~ii~~~~~~~~--~-~~~-~~~~~~g~~~~~~~~~~~~~a~~G~e~~~~~~~e~k~P~-r~ip~ai~~~  228 (444)
T 3gia_A          154 IVLVKLLILGLFIFAGLITIHP--S-YVI-PDLAPSAVSGMIFASAIFFLSYMGFGVITNASEHIENPK-KNVPRAIFIS  228 (444)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCG--G-GTS-CCCSHHHHHHHHHHHHHGGGGGTHHHHHHTTGGGBSSHH-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHcCh--h-hcC-CCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHccCcc-cchhHHHHHH
Confidence            3222222222222222222111  1 111 11123344567788888899997 888888889999995 5799999999


Q ss_pred             HHHHHHHHHHHhhHHhhhcC
Q 020588          250 FSVGVLPMFAVTFVGYWAYG  269 (324)
Q Consensus       250 ~~~~~~~Y~~~g~~gy~~fG  269 (324)
                      ..++.++|+..........+
T Consensus       229 ~~~~~~~y~~~~~~~~~~~~  248 (444)
T 3gia_A          229 ILIVMFVYVGVAISAIGNLP  248 (444)
T ss_dssp             HHHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHHHHHHhCCC
Confidence            99999999987766544444

>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A

Probab=98.72  E-value=1.4e-06  Score=84.61  Aligned_cols=250  Identities=10%  Similarity=-0.016  Sum_probs=129.6

Q ss_pred             cCccccccccceeehhhhhhhccccccccchhhhhhhccchhHHHHHHHHHHHHH-HHHHHHHHHHhh--hcCcccccHH
Q 020588           10 SYFFHLEMLDSWFQVGFVLTTGINSAYVLGYPGTVMVPLGWIAGVVGLIIATIVS-LNANALIAKLHE--FGGKRHIRYR   86 (324)
Q Consensus        10 ~~~~~~~~~~s~~~~~~~l~~~~iG~GiL~LP~a~~~~~G~i~g~i~li~~~~~~-~yt~~lL~~~~~--~~~~~~~sy~   86 (324)
                      +++.+.+|+.+.++..+..++.++|  +.++|.  ....|.. +++..++.+.+. ..+...+.|...  ....  -..-
T Consensus         4 ~~~~~~~r~l~~~~~~~l~~~~~ig--~~~~~~--~~~~G~~-~~~~~~i~~~~~~l~~al~~ael~s~~~~P~--GG~y   76 (511)
T 4djk_A            4 SVQTGKAKQLTLLGFFAITASMVMA--VYEYPT--FATSGFS-LVFFLLLGGILWFIPVGLCAAEMATVDGWEE--GGVF   76 (511)
T ss_dssp             --------CCCHHHHHHHTGGGGCC--GGGHHH--HHTTTTH-HHHHHHHHHHHTHHHHHHHHHHHHTTSCC-----CHH
T ss_pred             cccCccCccccHHHHHHHHHHHHHh--hchhHH--HHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHcccccCCC--CChh
Confidence            3445566788999999888888886  567774  4667753 333333333332 235666667544  2211  2345


Q ss_pred             HHHHHHhCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccCCCCCC-chhhHHHHHHHHHHHHhcCCCCcchH
Q 020588           87 DLAGHIYGRRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMK-LPYFIAIAGFVCALFAIGIPNLSALG  165 (324)
Q Consensus        87 ~l~~~~~G~~g~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~-~~~~~~i~~~~~~l~l~~~~~l~~l~  165 (324)
                      ..+++.+||+.+++......+.......++....++.+...+   ..++.+.+ ...+.+...++.++...-.+..|..+
T Consensus        77 ~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~p~~~~~~~~~~~~~~~~~~~~~~in~~g~~~~~  153 (511)
T 4djk_A           77 AWVSNTLGPRWGFAAISFGYLQIAIGFIPMLYFVLGALSYIL---KWPALNEDPITKTIAALIILWALALTQFGGTKYTA  153 (511)
T ss_dssp             HHHHHHHCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTTT---TCGGGTSCSSHHHHHHHHHHHHHHHHHHTCSSSHH
T ss_pred             hhHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCcccccCcHHHHHHHHHHHHHHHHHHHhChHHHH
Confidence            578889999988888877777766655555555555554321   01111111 11222221121111122223456666


Q ss_pred             HHHHHHHHHHHH-HHHHHhhhhhc---cCccCCCCcCCCCC-CcchhhhhHHhhhhHHHHHhc-cCchhhhhccccCchh
Q 020588          166 VWLGVSTVLSTI-YIVIAIWLSVR---DGLKNPARDYSIPG-TTATKIFESIGACANLVFAFN-TGMLPEIQATIRQPVV  239 (324)
Q Consensus       166 ~~S~~~~~~~~~-~~~i~i~~~~~---~~~~~~~~~~~~~~-~~~~~~~~~~~a~~i~~faf~-h~~~~~i~~~m~~ps~  239 (324)
                      ++..+.....+. ...+.++..+.   .+.. ++.+.+... .+.....+...++....|+|. .......-+|+|||+ 
T Consensus       154 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~G~e~~~~~a~E~k~P~-  231 (511)
T 4djk_A          154 RIAKVGFFAGILLPAFILIALAAIYLHSGAP-VAIEMDSKTFFPDFSKVGTLVVFVAFILSYMGVEASATHVNEMSNPG-  231 (511)
T ss_dssp             HHTHHHHHHTTHHHHHHHHHHHHHHTC-------------CCCCCTTSTTTTTTHHHHHHHHTTGGGGTGGGSSSSCCT-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-ccccCcccccCCCcccchHHHHHHHHHHHHhhHHHHHHHHHhccCcc-
Confidence            665543222111 11111222221   1111 000111000 011111233456677899996 888888999999996 


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhhHHhhhcCCC
Q 020588          240 ENMMKALYFQFSVGVLPMFAVTFVGYWAYGNS  271 (324)
Q Consensus       240 ~~~~~~~~~s~~~~~~~Y~~~g~~gy~~fG~~  271 (324)
                      |+.+|++..+..++.++|++..+.-....+++
T Consensus       232 k~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~  263 (511)
T 4djk_A          232 RDYPLAMLLLMVAAICLSSVGGLSIAMVIPGN  263 (511)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHeecCHh
Confidence            68999999999999999999877666665543

>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A

Probab=98.25  E-value=7.3e-05  Score=72.79  Aligned_cols=149  Identities=13%  Similarity=0.035  Sum_probs=88.8

Q ss_pred             ccccceeehhhhhhhccccccccchhhhhhh-ccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccccHHHHHHHHhC
Q 020588           16 EMLDSWFQVGFVLTTGINSAYVLGYPGTVMV-PLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYG   94 (324)
Q Consensus        16 ~~~~s~~~~~~~l~~~~iG~GiL~LP~a~~~-~~G~i~g~i~li~~~~~~~yt~~lL~~~~~~~~~~~~sy~~l~~~~~G   94 (324)
                      +|+.++++-...-.+..++.+...+... .. ..++..+++..++..++....+-++.+.-.+.|   .++.++.|..||
T Consensus        24 ~R~~~~~~~~~~W~g~~~~i~~~~~Ga~-~~~GLs~~~a~lai~lG~li~~~~~~l~~~~G~~~G---l~~~v~~R~~FG   99 (501)
T 2jln_A           24 ERSVGPFSLAAIWFAMAIQVAIFIAAGQ-MTSSFQVWQVIVAIAAGCTIAVILLFFTQSAAIRWG---INFTVAARMPFG   99 (501)
T ss_dssp             GCCBCHHHHHHHHHHHHCSTHHHHHHHH-HTTTSCHHHHHHHHHHHHHHHHHHHHHHTHHHHHHC---CCHHHHTTTTSC
T ss_pred             hCCCCHHHHHHHHHHHHHHHHHHHHHHH-HhcCcCHHHHHHHHHHHHHHHHHHHHHHhHHHhhcC---CChhhhhHhhcc
Confidence            3445555444333444444444444433 22 223344555555544444444444444433444   369999999999


Q ss_pred             CCcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccCCCCCCchhhHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 020588           95 RRAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGVSTV  173 (324)
Q Consensus        95 ~~g~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~i~~~~~~l~l~~~~~l~~l~~~S~~~~~  173 (324)
                      ++|..+..+...+.++|-...-....++.+..+++...+..   +...+.++++++. ++... ...+.++++..+...
T Consensus       100 ~~Gs~i~~ll~~i~~igw~~v~~~~gg~al~~~~~~~~g~~---~~~v~~~i~~~l~-~~~~~-~G~~~i~~~~~~~~p  173 (501)
T 2jln_A          100 IRGSLIPITLKALLSLFWFGFQTWLGALALDEITRLLTGFT---NLPLWIVIFGAIQ-VVTTF-YGITFIRWMNVFASP  173 (501)
T ss_dssp             TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHH-HHHHT-THHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc---hHHHHHHHHHHHH-HHHHH-hCHHHHHHHHHHHHH
Confidence            99999999999999999999888899999988876543111   1233445455544 34443 346677766665443

>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}

Probab=94.85  E-value=1.3  Score=42.86  Aligned_cols=142  Identities=16%  Similarity=0.128  Sum_probs=73.0

Q ss_pred             ccccceeehhhhhhhccccc-cccchhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccccHHHHHHHHhC
Q 020588           16 EMLDSWFQVGFVLTTGINSA-YVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYG   94 (324)
Q Consensus        16 ~~~~s~~~~~~~l~~~~iG~-GiL~LP~a~~~~~G~i~g~i~li~~~~~~~yt~~lL~~~~~~~~~~~~sy~~l~~~~~G   94 (324)
                      .|+.+++...+.+..+.+++ .++++|-. ..+.|+........ .+......+..+.+..++.  +..|..|.-++-||
T Consensus        19 GR~l~~~~~~~s~~at~~Sa~~~lG~~g~-~y~~G~~~~~~~~~-~~~~~~i~~~~~~p~~~~~--~~~T~~e~l~~Rfg   94 (530)
T 3dh4_A           19 GKSLPWWAVGASLIAANISAEQFIGMSGS-GYSIGLAIASYEWM-SAITLIIVGKYFLPIFIEK--GIYTIPEFVEKRFN   94 (530)
T ss_dssp             CSCCCHHHHHHHHHHHHCSHHHHTHHHHH-HHHTCGGGHHHHHH-HHHHHHHHHHHTHHHHHHT--TCCSHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHH-HHHhChHHHHHHHH-HHHHHHHHHHHHHHHHHHc--CCccHHHHHHHHcC
Confidence            46678888888888888886 58999988 78888643211111 1111112223333333333  34699999999999


Q ss_pred             CCcchhHHHHHHHHH-HHHHHHHHHHHHhhHHHHHHHhccCCCCCCchhhHHHHHHHHHHHHhcCCCCcchHHHHHH
Q 020588           95 RRAYALTWGLQYVNL-FMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGV  170 (324)
Q Consensus        95 ~~g~~~v~~~~~~~~-~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~i~~~~~~l~l~~~~~l~~l~~~S~~  170 (324)
                      ++.|.+..+...+.. +.-+.+-+...+..++.++        +++...-+++.++++ +....+--++...+.-.+
T Consensus        95 ~~~~~~~a~~~l~~~~~~~~~~~l~~~~~~~~~~~--------Gi~~~~~i~i~~~i~-~~Yt~~GGl~aV~~TD~i  162 (530)
T 3dh4_A           95 KKLKTILAVFWISLYIFVNLTSVLYLGGLALETIL--------GIPLMYSILGLALFA-LVYSIYGGLSAVVWTDVI  162 (530)
T ss_dssp             HHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHT--------TCCHHHHHHHHHHHH-HHTTC------CCSHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------CCCHHHHHHHHHHHH-HHHHHhcchHHHHHHHHH
Confidence            988877766543322 2222222333344444331        133333334444433 344444566666666555

>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A

Probab=93.30  E-value=5.1  Score=39.25  Aligned_cols=142  Identities=17%  Similarity=0.153  Sum_probs=71.6

Q ss_pred             ccccceeehhhhhhhccccc-cccchhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccccHHHHHHHHhC
Q 020588           16 EMLDSWFQVGFVLTTGINSA-YVLGYPGTVMVPLGWIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYG   94 (324)
Q Consensus        16 ~~~~s~~~~~~~l~~~~iG~-GiL~LP~a~~~~~G~i~g~i~li~~~~~~~yt~~lL~~~~~~~~~~~~sy~~l~~~~~G   94 (324)
                      .|+.+++...+.+..+.+++ ..++.|-. ..+.|+........ .+.........+.+-.++.+  ..|..|.-++=||
T Consensus        48 GR~l~~~~~~~Sl~at~~sa~t~lG~~g~-~y~~G~~~~~~~~~-~~~~~~~~~~~~~p~~~r~~--~~T~~e~l~~Rfg  123 (593)
T 2xq2_A           48 GKSLPWWAVGASLIAANISAEQFIGMSGS-GYSIGLAIASYEWM-SAITLIIVGKYFLPIFIEKG--IYTIPEFVEKRFN  123 (593)
T ss_dssp             ---CCHHHHHHHHHGGGSSHHHHHHHHHH-HHHTCGGGGHHHHH-HHHHHHHHHHTHHHHHHHTT--CCSHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHhcHHHHhhHhHH-HHHcCHHHHHHHHH-HHHHHHHHHHHHHHHHHhCC--CCCcHHHHHHHcc
Confidence            36678888888888887775 57899988 77888642211111 01111111222333333333  3689999998899


Q ss_pred             CCcchhHHHHHHHH-HHHHHHHHHHHHHhhHHHHHHHhccCCCCCCchhhHHHHHHHHHHHHhcCCCCcchHHHHHH
Q 020588           95 RRAYALTWGLQYVN-LFMINTGYIILAGQALKAAFVLFWKDDHTMKLPYFIAIAGFVCALFAIGIPNLSALGVWLGV  170 (324)
Q Consensus        95 ~~g~~~v~~~~~~~-~~g~~i~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~i~~~~~~l~l~~~~~l~~l~~~S~~  170 (324)
                      ++.|.+..+...+. .+.....-+...+..++.++        +++...-+++.++++ .....+--++...+.-.+
T Consensus       124 ~~~~~~~ai~~l~~~~~~~~~~~l~~~~~~l~~~~--------Gi~~~~~i~i~~~i~-~~Yt~~GGl~av~~TD~i  191 (593)
T 2xq2_A          124 KKLKTILAVFWISLYIFVNLTSVLYLGGLALETIL--------GIPLMYSILGLALFA-LVYSIYGGLSAVVWTDVI  191 (593)
T ss_dssp             HHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--------CCCHHHHHHHHHHHH-HHHHHTTC---CCHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------CccHHHHHHHHHHHH-HHHHHhcchHHHHHHHHH
Confidence            88777666554322 22222222333444454442        122233333444443 344455566776666555

>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...

Probab=91.46  E-value=11  Score=36.48  Aligned_cols=109  Identities=9%  Similarity=0.058  Sum_probs=58.1

Q ss_pred             ceeehhhhhhhcccccc-ccchhhhhhhccc----hhHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccccHHHHHHHHhC
Q 020588           20 SWFQVGFVLTTGINSAY-VLGYPGTVMVPLG----WIAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYG   94 (324)
Q Consensus        20 s~~~~~~~l~~~~iG~G-iL~LP~a~~~~~G----~i~g~i~li~~~~~~~yt~~lL~~~~~~~~~~~~sy~~l~~~~~G   94 (324)
                      |-.+-.+..+++.+|-| +.-.||- ..+-|    +++=++.++++|.=-.+.=..+.|-..+..++  +=-+.-++. .
T Consensus        10 sr~~FiLa~~G~AVGLGNiWRFPyl-~~~nGGgAFlipYli~l~~~GiPll~~E~alGq~~~~~~r~--~~i~a~~~l-~   85 (519)
T 2a65_A           10 TRLGLILAMAGNAVGLGNFLRFPVQ-AAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGAQGHG--TTPAIFYLL-W   85 (519)
T ss_dssp             CHHHHHHHHHHHHSSHHHHTHHHHH-HHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTTCC--SHHHHHHHH-S
T ss_pred             cHHHHHHHHHHHHhcccHHHHHHHH-HHHcCCcHHHHHHHHHHHHHHHHHHHHHHHhcccchhccCC--CHHHHHHHh-c
Confidence            33445566788999988 9999998 66655    23333333333332222222233321111111  112222222 2


Q ss_pred             CC-cchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhc
Q 020588           95 RR-AYALTWGLQYVNLFMINTGYIILAGQALKAAFVLFW  132 (324)
Q Consensus        95 ~~-g~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~~  132 (324)
                      |+ ....+.....+..+..++-|.++.+-.+..++.++.
T Consensus        86 ~~~~~~giG~~~v~~~~~i~~yY~vi~gW~l~Y~~~s~~  124 (519)
T 2a65_A           86 RNRFAKILGVFGLWIPLVVAIYYVYIESWTLGFAIKFLV  124 (519)
T ss_dssp             CSHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            32 223455566666677788888888887777766653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	324
d2a65a1	509	Na(+):neurotransmitter symporter homologue LeuT {A	80.33

>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]}

class: Membrane and cell surface proteins and peptides
fold: SNF-like
superfamily: SNF-like
family: SNF-like
domain: Na(+):neurotransmitter symporter homologue LeuT
species: Aquifex aeolicus [TaxId: 63363]

Probab=80.33  E-value=19  Score=31.97  Aligned_cols=110  Identities=9%  Similarity=0.049  Sum_probs=66.8

Q ss_pred             ceeehhhhhhhcccccc-ccchhhhhhhccch---hHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccccHHHHHHHHhCC
Q 020588           20 SWFQVGFVLTTGINSAY-VLGYPGTVMVPLGW---IAGVVGLIIATIVSLNANALIAKLHEFGGKRHIRYRDLAGHIYGR   95 (324)
Q Consensus        20 s~~~~~~~l~~~~iG~G-iL~LP~a~~~~~G~---i~g~i~li~~~~~~~yt~~lL~~~~~~~~~~~~sy~~l~~~~~G~   95 (324)
                      |..+-.+..++..+|.| +.-.||-..++.|.   ++=.++++++|.=..+-=..+.|..+. +. ...++.+.....+.
T Consensus         6 s~~~fila~~g~avGlGNiWrFPyl~~~nGGgaFlipY~~~l~l~gvPll~lE~~lGq~~~~-g~-i~~~~~i~~~~~~~   83 (509)
T d2a65a1           6 TRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGA-QG-HGTTPAIFYLLWRN   83 (509)
T ss_dssp             CHHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TT-CCSHHHHHHHHSCS
T ss_pred             ChHHHHHHHHHHHhcccHHHhhhHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHcCCCCC-Cc-ccHHHHHHHHhccC
Confidence            34455677788899987 88899983455553   222233333333332333334444332 22 23677777776655


Q ss_pred             CcchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHh
Q 020588           96 RAYALTWGLQYVNLFMINTGYIILAGQALKAAFVLF  131 (324)
Q Consensus        96 ~g~~~v~~~~~~~~~g~~i~y~i~~~~~l~~i~~~~  131 (324)
                      +....+.....+..+..++.|.++.+-.+..+.+.+
T Consensus        84 ~~~~giG~~~~~~~~~i~~yy~vi~~w~l~Y~~~s~  119 (509)
T d2a65a1          84 RFAKILGVFGLWIPLVVAIYYVYIESWTLGFAIKFL  119 (509)
T ss_dssp             HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            444556667777777888889999888887766654