Citrus Sinensis ID: 020603

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320----
Protein Sequence
MSSFSKSSTSSIYGENDSDQLRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARHLKIDANSTTFQEIIRCFWMPRLLQKMDTSSSSSPSALSQNPTINSQPFDHAFHHQGSASAQIISHQVPYDRGVIDHQELNSSSDSEHGIGTSTSCISSSESMNFSQVSQFSEYPTGGDHFHASNNDSSEYNTFAKDFCQFDSNCYDMENISQPETMPAPLAGDFNNWVQEYDLVDNMWGAWMNFGNSGTHADINEFN
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccHHHHHHHHccccccHHHHcccccccccccccccHHHHHHHHHHHHHHccHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccccccccHHHHHHHccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccEcEEEEEEccccccccccccHHHHHHHHHHHHHHcccccHHHHHHccccccHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHcccHHHHHcccccccHHHHHHHHHHHcccHHHHcccccccccccHHHHHHccccHHHHcccccccHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccccccccHHccc
Coil and Loop (DISEMBL)
mssfsksstssiygendsdqlrrgpwtleeDTLLIQYISRHSEGRWNLLAKRsglkrtgkscRLRWLNylkpdvkrgnltpqEQMSILELHSKWGNRWSKIaqhlpgrtdneiKNYWRTRVQKQARHLKIDANSTTFQEIIRCFwmprllqkmdtssssspsalsqnptinsqpfdhafhhqgsasaqiishqvpydrgvidhqelnsssdsehgigtstscisssesmnfsqvsqfseyptggdhfhasnndsseyntfakdfcqfdsncydmenisqpetmpaplagdfnnwVQEYDLVDNMWGawmnfgnsgthadinefn
Flexible Loop (DISEMBL)
mssfsksstssiygendsdqlrrgpWTLEEDTLLIQYISrhsegrwnllakrsglkrtgkscrlrwlnylkpdvkrgnltpQEQMSILELHSKWGNRWSKIAqhlpgrtdneikNYWRTRVQKQARhlkidansttfQEIIRCFWMPRLLQKMDTSSSSSPSALSQNPTINSQPFDHAFHHQGSASAQIISHQVPYDRGVIDHQElnsssdsehgIGTSTSCISSSESMNFSQVSQFSEYPTGGDHFHASNNDSSEYNTFAKDFCQFDSNCYDMENISQPETMPAPLAGDFNNWVQEYDLVDNMWGAWMNFGNSGTHADINEFN
Low Complexity Region (SEG)
MssfsksstssIYGENDSDQLRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARHLKIDANSTTFQEIIRCFWMPRLLQKMDTssssspsalsQNPTINSQPFDHAFHHQGSASAQIISHQVPYDRGVIDHQELNSSSDSEHgigtstscisssesMNFSQVSQFSEYPTGGDHFHASNNDSSEYNTFAKDFCQFDSNCYDMENISQPETMPAPLAGDFNNWVQEYDLVDNMWGAWMNFGNSGTHADINEFN
Disordered region (IsUnstruct)
************************PWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARHLKIDANSTTFQEIIRCFWMPRLL**********************************************************************************************************YNTFAKDFCQFDSNCYDMENIS****MPAPLAGDFNNWVQEYDLVDNMWGAWMNFGN***********
Disordered Region (DISOPRED)
************************PWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQK**********************************************************************************************************************TGGDHFHASNNDSSEYNTFAKDFCQF**************************WVQEYDLVDNMWGAWMNFGN***********
Disordered Region (DISEMBL)
*******************QLRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARHLKIDANSTTFQEIIRCFWMPRLLQK***************PTINSQPFDHAFHHQGSASAQIISHQVPYDRGVIDHQEL****************************SQFSEYPTGGDHFHASNNDSSEYNTFAKDFCQFDSNCYDMENISQPETMPAPLAGDFNNWVQEYDLVDNMWGAWMNFGNSGTHADINEFN
Disordered Region (DISPRO)
****SKSSTSSIYGENDSDQLRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARHLKIDANSTTFQEIIRCFWM***********************************************VPYDRGVID*******************************************************NTFAKDFCQFDSNCYDMENISQPETMPAPLAGDFNNWVQEYDLVDNMWGAWMNFGNSGTHADINEFN
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSSFSKSSTSSIYGENDSDQLRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARHLKIDANSTTFQEIIRCFWMPRLLQKMDTSSSSSPSALSQNPTINSQPFDHAFHHQGSASAQIISHQVPYDRGVIDHQELNSSSDSEHGIGTSTSCISSSESMNFSQVSQFSEYPTGGDHFHASNNDSSEYNTFAKDFCQFDSNCYDMENISQPETMPAPLAGDFNNWVQEYDLVDNMWGAWMNFGNSGTHADINEFN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	324	2.2.26 [Sep-21-2011]
Q9LK95	226	Transcription factor MYB2	no	no	0.361	0.517	0.675	2e-47
P81391	205	Myb-related protein 305 O	N/A	no	0.361	0.570	0.694	3e-46
P81396	198	Myb-related protein 340 O	N/A	no	0.330	0.540	0.722	2e-45
Q4JL84	235	Transcription factor MYB5	no	no	0.342	0.472	0.621	2e-38
Q9LX82	256	Transcription factor MYB4	no	no	0.351	0.445	0.614	2e-38
Q4JL76	242	Myb-related protein MYBAS	no	no	0.342	0.458	0.594	6e-36
Q0JIC2	553	Transcription factor GAMY	no	no	0.327	0.191	0.556	9e-36
A2WW87	553	Transcription factor GAMY	N/A	no	0.327	0.191	0.556	9e-36
P81394	268	Myb-related protein 315 O	N/A	no	0.348	0.421	0.575	7e-35
Q38850	249	Transcription repressor M	no	no	0.351	0.457	0.570	1e-34

>sp|Q9LK95|MYB21_ARATH Transcription factor MYB21 OS=Arabidopsis thaliana GN=MYB21 PE=1 SV=1

 Score =  189 bits (481), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 79/117 (67%), Positives = 100/117 (85%)

Query: 20  QLRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNL 79
           ++R+GPWT+EED +LI YI+ H +G WN LAK +GLKRTGKSCRLRWLNYL+PDV+RGN+
Sbjct: 19  EVRKGPWTMEEDLILINYIANHGDGVWNSLAKSAGLKRTGKSCRLRWLNYLRPDVRRGNI 78

Query: 80  TPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARHLKIDANSTT 136
           TP+EQ+ I+ELH+KWGNRWSKIA+HLPGRTDNEIKN+WRTR+QK  +   +   S+ 
Sbjct: 79  TPEEQLIIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQKYIKQSDVTTTSSV 135

Transcription factor involved in photomorphogenesis in the light. May act downstream of the light receptor network and directly affects transcription of light-induced genes. In darkness, its probable degradation prevent the activation of light-induced genes. Required to activate expression of PAL.
Arabidopsis thaliana (taxid: 3702)

>sp|P81391|MYB05_ANTMA Myb-related protein 305 OS=Antirrhinum majus GN=MYB305 PE=2 SV=1

 Score =  186 bits (471), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 82/118 (69%), Positives = 101/118 (85%), Gaps = 1/118 (0%)

Query: 20  QLRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNL 79
           ++R+GPWT+EED +LI YI+ H EG WN LA+ +GLKRTGKSCRLRWLNYL+PDV+RGN+
Sbjct: 12  EVRKGPWTMEEDLILINYIANHGEGVWNSLARSAGLKRTGKSCRLRWLNYLRPDVRRGNI 71

Query: 80  TPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARHLKIDANSTTF 137
           TP+EQ+ I+ELH+KWGNRWSKIA+ LPGRTDNEIKNYWRTR+QK        ++STTF
Sbjct: 72  TPEEQLLIMELHAKWGNRWSKIAKTLPGRTDNEIKNYWRTRIQKHMEQGD-QSSSTTF 128

Transcription factor.

Antirrhinum majus (taxid: 4151)

>sp|P81396|MYB40_ANTMA Myb-related protein 340 OS=Antirrhinum majus GN=MYB340 PE=2 SV=1

 Score =  182 bits (463), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 78/108 (72%), Positives = 97/108 (89%), Gaps = 1/108 (0%)

Query: 20  QLRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNL 79
           ++R+GPWT+EED +LI +IS H EG WN +A+ +GLKRTGKSCRLRWLNYL+PDV+RGN+
Sbjct: 12  EVRKGPWTMEEDLILINFISNHGEGVWNTIARSAGLKRTGKSCRLRWLNYLRPDVRRGNI 71

Query: 80  TPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYW-RTRVQKQAR 126
           TP+EQ+ I+ELH+KWGNRWSKIA+HLPGRTDNEIKNYW RTR+QK  +
Sbjct: 72  TPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNYWNRTRIQKHIK 119

Transcription factor.

Antirrhinum majus (taxid: 4151)

>sp|Q4JL84|MYB59_ARATH Transcription factor MYB59 OS=Arabidopsis thaliana GN=MYB59 PE=2 SV=2

 Score =  159 bits (403), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 69/111 (62%), Positives = 90/111 (81%)

Query: 19  DQLRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGN 78
           ++ R+GPWT +ED LL+ ++    + RW+ +AK SGL RTGKSCRLRW+NYL P +KRG 
Sbjct: 6   EEYRKGPWTEQEDILLVNFVHLFGDRRWDFVAKVSGLNRTGKSCRLRWVNYLHPGLKRGK 65

Query: 79  LTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARHLK 129
           +TPQE+  +LELH+KWGNRWSKIA+ LPGRTDNEIKNYWRT ++K+A+  K
Sbjct: 66  MTPQEERLVLELHAKWGNRWSKIARKLPGRTDNEIKNYWRTHMRKKAQEKK 116

Transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LX82|MYB48_ARATH Transcription factor MYB48 OS=Arabidopsis thaliana GN=MYB48 PE=2 SV=1

 Score =  159 bits (402), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 70/114 (61%), Positives = 90/114 (78%)

Query: 22  RRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTP 81
           R+GPWT +ED LL+ ++    + RW+ +AK SGL RTGKSCRLRW+NYL P +KRG +TP
Sbjct: 8   RKGPWTEQEDILLVNFVHLFGDRRWDFIAKVSGLNRTGKSCRLRWVNYLHPGLKRGKMTP 67

Query: 82  QEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARHLKIDANST 135
           QE+  +LELH+KWGNRWSKIA+ LPGRTDNEIKNYWRT ++K+A+  K   + T
Sbjct: 68  QEERLVLELHAKWGNRWSKIARKLPGRTDNEIKNYWRTHMRKKAQEKKRPVSPT 121

Transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|Q4JL76|MYBA2_ORYSJ Myb-related protein MYBAS2 OS=Oryza sativa subsp. japonica GN=MYBAS2 PE=2 SV=1

 Score =  151 bits (382), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 66/111 (59%), Positives = 88/111 (79%)

Query: 19  DQLRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGN 78
           +++R+GPWT +ED  L+  +    E RW+ +AK SGL RTGKSCRLRW+NYL P +KRG 
Sbjct: 6   EEIRKGPWTEQEDLQLVCTVRLFGERRWDFIAKVSGLNRTGKSCRLRWVNYLHPGLKRGR 65

Query: 79  LTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARHLK 129
           ++P E+  ILELH++WGNRWS+IA+ LPGRTDNEIKNYWRT ++K+A+  K
Sbjct: 66  MSPHEERLILELHARWGNRWSRIARRLPGRTDNEIKNYWRTHMRKKAQERK 116

Transcription factor.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q0JIC2|GAM1_ORYSJ Transcription factor GAMYB OS=Oryza sativa subsp. japonica GN=GAM1 PE=2 SV=1

 Score =  150 bits (380), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 59/106 (55%), Positives = 83/106 (78%)

Query: 21  LRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLT 80
           L++GPWT  ED +L+ Y+ +H EG WN + K +GL R GKSCRLRW N+L+P++K+G  T
Sbjct: 40  LKKGPWTSAEDAILVDYVKKHGEGNWNAVQKNTGLFRCGKSCRLRWANHLRPNLKKGAFT 99

Query: 81  PQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQAR 126
            +E+  I++LHSK GN+W+++A HLPGRTDNEIKNYW TR+++  R
Sbjct: 100 AEEERLIIQLHSKMGNKWARMAAHLPGRTDNEIKNYWNTRIKRCQR 145

Transcriptional activator of gibberellin-dependent alpha-amylase expression in aleurone cells. Involved in pollen and floral organs development. May bind to the 5'-TAACAAA-3' box of alpha-amylase promoter.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2WW87|GAM1_ORYSI Transcription factor GAMYB OS=Oryza sativa subsp. indica GN=GAM1 PE=2 SV=1

 Score =  150 bits (380), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 59/106 (55%), Positives = 83/106 (78%)

Query: 21  LRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLT 80
           L++GPWT  ED +L+ Y+ +H EG WN + K +GL R GKSCRLRW N+L+P++K+G  T
Sbjct: 40  LKKGPWTSAEDAILVDYVKKHGEGNWNAVQKNTGLFRCGKSCRLRWANHLRPNLKKGAFT 99

Query: 81  PQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQAR 126
            +E+  I++LHSK GN+W+++A HLPGRTDNEIKNYW TR+++  R
Sbjct: 100 AEEERLIIQLHSKMGNKWARMAAHLPGRTDNEIKNYWNTRIKRCQR 145

Transcriptional activator of gibberellin-dependent alpha-amylase expression in aleurone cells. Involved in pollen and floral organs development. May bind to the 5'-TAACAAA-3' box of alpha-amylase promoter.

Oryza sativa subsp. indica (taxid: 39946)

>sp|P81394|MYB15_ANTMA Myb-related protein 315 OS=Antirrhinum majus GN=MYB315 PE=2 SV=1

 Score =  148 bits (373), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 65/113 (57%), Positives = 84/113 (74%)

Query: 21  LRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLT 80
           L+RGPWT EED  L  Y+ ++    W ++ K +GL R GKSCRLRW+NYL+PD+K+G LT
Sbjct: 12  LKRGPWTEEEDQKLTSYVLKNGIQGWRVIPKLAGLSRCGKSCRLRWMNYLRPDLKKGPLT 71

Query: 81  PQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARHLKIDAN 133
             E+  I+ELH+  GNRWSKIA H+PGRTDNEIKNYW T ++K+ + L ID N
Sbjct: 72  EMEENQIIELHAHLGNRWSKIALHIPGRTDNEIKNYWNTHIKKKLKLLGIDPN 124

Transcription factor.

Antirrhinum majus (taxid: 4151)

>sp|Q38850|MYB5_ARATH Transcription repressor MYB5 OS=Arabidopsis thaliana GN=MYB5 PE=1 SV=1

 Score =  147 bits (371), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 65/114 (57%), Positives = 82/114 (71%)

Query: 21  LRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLT 80
           ++RGPWT+EED +L+ +I +  EGRW  L KR+GL R GKSCRLRW+NYL+P VKRG +T
Sbjct: 23  MKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGIT 82

Query: 81  PQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARHLKIDANS 134
             E+  IL LH   GNRWS IA  +PGRTDNEIKNYW T ++K+     ID  +
Sbjct: 83  SDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKKLLRQGIDPQT 136

Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	324
224133080	303	predicted protein [Populus trichocarpa]	0.854	0.914	0.657	3e-95
224121290	327	predicted protein [Populus trichocarpa]	0.888	0.880	0.586	2e-87
392521658	314	myb domain protein [Hevea brasiliensis]	0.814	0.840	0.613	2e-87
359491453	328	PREDICTED: transcription factor MYB75-li	0.845	0.835	0.586	7e-82
351724763	317	MYB transcription factor MYB84 [Glycine	0.851	0.870	0.580	2e-79
255640165	317	unknown [Glycine max]	0.858	0.876	0.574	8e-78
294847482	310	MYB [Camellia sinensis]	0.762	0.796	0.634	3e-77
351726150	264	MYB transcription factor MYB184 [Glycine	0.777	0.954	0.601	2e-75
255636342	312	unknown [Glycine max]	0.861	0.894	0.565	4e-75
255588387	260	DNA binding protein, putative [Ricinus c	0.719	0.896	0.613	2e-74

>gi|224133080|ref|XP_002321477.1| predicted protein [Populus trichocarpa] gi|222868473|gb|EEF05604.1| predicted protein [Populus trichocarpa]

 Score =  354 bits (909), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 192/292 (65%), Positives = 215/292 (73%), Gaps = 15/292 (5%)

Query: 1   MSSFSKSSTSSIYGENDSDQLRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGK 60
           MSS  KS TSS   + D  +LRRGPWTLEEDTLL+ YI RH EGRWNLLAKR+GL+RTGK
Sbjct: 7   MSSLKKSMTSS---KEDGSELRRGPWTLEEDTLLVHYIGRHGEGRWNLLAKRAGLRRTGK 63

Query: 61  SCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTR 120
           SCRLRWLNYLKPDVKRGNLTPQEQ+ IL+LHSKWGNRWSKIAQHLPGRTDNEIKNYWRTR
Sbjct: 64  SCRLRWLNYLKPDVKRGNLTPQEQLLILDLHSKWGNRWSKIAQHLPGRTDNEIKNYWRTR 123

Query: 121 VQKQARHLKIDANSTTFQEIIRCFWMPRLLQKMDTSSSSSPSALSQNPTINSQP---FDH 177
           VQKQARHLKIDANST FQ IIR FWMPRLLQK+  SS+SS +  SQ P + SQP   +  
Sbjct: 124 VQKQARHLKIDANSTAFQNIIRWFWMPRLLQKIGGSSTSSSAMPSQRPAVVSQPNLNYAP 183

Query: 178 AFHHQGSASAQIISHQ-VPYDRGVIDH--QELNSSSDSEHGIGTSTSCISSSESMNFSQV 234
            F     A   ++  Q  P D  V  H  +    +SDSE G   ++SCISS+ESMN SQ+
Sbjct: 184 QFSTFPPALPPLVQQQEAPLDMSVTMHYLEPHEQTSDSELG---TSSCISSAESMNVSQM 240

Query: 235 SQFSEYPTGGDHFHASNNDSSEYNTFAKDFCQFDSNCYDMENISQPETMPAP 286
           SQ SEYPT    F A  N+SSEY+T AK     DSNCYDME I+   TMP P
Sbjct: 241 SQLSEYPT--SPFQAIGNNSSEYSTLAKGCYYVDSNCYDMEAINL-ATMPVP 289

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224121290|ref|XP_002318546.1| predicted protein [Populus trichocarpa] gi|222859219|gb|EEE96766.1| predicted protein [Populus trichocarpa]

 Score =  328 bits (842), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 177/302 (58%), Positives = 213/302 (70%), Gaps = 14/302 (4%)

Query: 17  DSDQLRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKR 76
           D  +LRRGPWTLEEDTLL+ YI+RH EGRWNLLAKR+GL+RTGKSCRLRWLNYLKPDVKR
Sbjct: 18  DDAELRRGPWTLEEDTLLVHYIARHGEGRWNLLAKRAGLRRTGKSCRLRWLNYLKPDVKR 77

Query: 77  GNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARHLKIDANSTT 136
           GNLTPQEQ+ IL+LHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARHL+IDANST 
Sbjct: 78  GNLTPQEQLLILDLHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARHLRIDANSTA 137

Query: 137 FQEIIRCFWMPRLLQKMDTSSSSSPSALSQNPTINSQPFDHAFHHQGSASAQIISHQ--V 194
           FQ+IIR  WMPRLLQK+  SS+SS +   Q+P ++    ++A       +A     Q   
Sbjct: 138 FQDIIRRSWMPRLLQKIGGSSTSSSAMTCQSPAVSQLIPNYAPQLSAFPTALPPPQQQEA 197

Query: 195 PYDRGVIDH--QELNSSSDSEHGIGTSTSCISSSESMNFSQVSQFSEYPTGGDHFHASNN 252
           P D  V+ H  +    +SDSEHG   ++SCISS+ESMN SQ+S  SEYP     F A  N
Sbjct: 198 PLDMSVMMHCMEHREQTSDSEHG---TSSCISSAESMNVSQMSHLSEYPKSP--FQAMGN 252

Query: 253 DSSEYNTFAKDFCQFDSNCYDMENISQPETMPAPLAGDFNNWVQEYDLVDNMWGAWMNFG 312
           +  +Y+T  KD    DSN YDME I+   TM  P  G+      +  + D  W  + +FG
Sbjct: 253 N-GDYSTLVKDCYYVDSNFYDMEAINL-ATMSVP--GELGISAVDRHMGDGDWAGY-DFG 307

Query: 313 NS 314
           ++
Sbjct: 308 DT 309

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|392521658|gb|AFM77857.1| myb domain protein [Hevea brasiliensis]

 Score =  328 bits (841), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 184/300 (61%), Positives = 218/300 (72%), Gaps = 36/300 (12%)

Query: 22  RRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTP 81
           RRGPWTLEED LL+ YI+RH EGRWNLLAK +GL+RTGKSCRLRWLNYLKPDVKRGNLTP
Sbjct: 27  RRGPWTLEEDNLLVHYIARHGEGRWNLLAKCAGLRRTGKSCRLRWLNYLKPDVKRGNLTP 86

Query: 82  QEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARHLKIDANSTTFQEII 141
           QEQ+ IL+LHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARHLK+DANST FQ+II
Sbjct: 87  QEQLLILDLHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARHLKVDANSTAFQDII 146

Query: 142 RCFWMPRLLQKMD--------TSSSSSPSALSQNPTINS-QPFDHAFH-HQGSASAQIIS 191
           +CFW+PRLLQK++        TS+SSS + LSQNPT+ S QP +++ H          + 
Sbjct: 147 KCFWIPRLLQKIEGSSTSCSSTSTSSSSTILSQNPTVVSDQPVNYSAHDLPFPIPPPQLP 206

Query: 192 HQVPYD-RGVIDHQELNSSSDSEHGIGTSTSCISSSESMNFSQVSQFSEYPTGGDHFHAS 250
            +V  + +G +DH     +SDSEHG   S SCISS+ESMN SQ+SQ SEYPT   H    
Sbjct: 207 QEVSGNLQGNLDH-----NSDSEHG---SNSCISSTESMNISQISQLSEYPTSPFH---- 254

Query: 251 NNDSSEYNTFAKDFCQFDSNCYDMENISQPETMPAPLAGDF-----NNWVQEYDLVDNMW 305
                  +TF KD    DS CY+ME+++ P T+  P AG F     +NWV  YD  DN+W
Sbjct: 255 -----PISTFQKDCYYVDSGCYNMESMT-PATLSVP-AGVFQNVAESNWVG-YDFGDNIW 306

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359491453|ref|XP_002276526.2| PREDICTED: transcription factor MYB75-like [Vitis vinifera] gi|297734217|emb|CBI15464.3| unnamed protein product [Vitis vinifera]

 Score =  310 bits (793), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 173/295 (58%), Positives = 211/295 (71%), Gaps = 21/295 (7%)

Query: 20  QLRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNL 79
           +LRRGPWTLEEDTLLI YI+ H EGRWNLLAK SGL+RTGKSCRLRWLNYLKPDVKRGNL
Sbjct: 17  ELRRGPWTLEEDTLLIHYIASHGEGRWNLLAKCSGLRRTGKSCRLRWLNYLKPDVKRGNL 76

Query: 80  TPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARHLKIDANSTTFQE 139
           TPQEQ+ ILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARHLKID+NS  FQ+
Sbjct: 77  TPQEQLLILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARHLKIDSNSRAFQD 136

Query: 140 IIRCFWMPRLLQKMDTSSSSSPSALSQNPTINSQPFDHAFHHQGSASA-QIISHQVPYDR 198
           +IRC WMPRLLQK++ SSS+  S+ +   +I  Q  +HA   Q SA+A   +  Q P   
Sbjct: 137 VIRCVWMPRLLQKIEGSSST--SSTTSQVSIIPQSLNHADSQQHSAAAPPPVVAQAPVQG 194

Query: 199 GV--------IDHQELNSSSDSEHGIGTSTSCISSSESMNFSQVSQFSEYPTGGDHFHAS 250
            +        ++H E NSSS++      ++  I SSESMN SQ+SQ  +YPT    F A 
Sbjct: 195 PLSINETINNLEHNEKNSSSEN-----CTSPSICSSESMNISQISQIPDYPTSP--FQAM 247

Query: 251 NNDSSEYNTFAKDFCQFDSNCYDMENISQPETMPAPLAGDFNNWVQEYDLVDNMW 305
           +N S +Y+T  K +   D++ Y+ME  +   +M AP  GDF N V +  +V++ W
Sbjct: 248 SN-SDDYSTLLKGYYNVDNSNYEMETFNL-ASMSAP-QGDFENPVGDCPMVESNW 299

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351724763|ref|NP_001235789.1| MYB transcription factor MYB84 [Glycine max] gi|110931680|gb|ABH02839.1| MYB transcription factor MYB84 [Glycine max]

 Score =  302 bits (773), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 177/305 (58%), Positives = 201/305 (65%), Gaps = 29/305 (9%)

Query: 17  DSDQLRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKR 76
           D ++LRRGPWTLEED LL QYIS H EGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKR
Sbjct: 13  DDNELRRGPWTLEEDNLLSQYISSHGEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKR 72

Query: 77  GNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARHLKIDANSTT 136
           GNLTPQEQ+ ILELHSKWGNRWSKIAQ+LPGRTDNEIKNYWRTR+QKQARHLKID +S  
Sbjct: 73  GNLTPQEQLIILELHSKWGNRWSKIAQNLPGRTDNEIKNYWRTRIQKQARHLKIDTDSRE 132

Query: 137 FQEIIRCFWMPRLLQKMDTSSSSSPSALSQNPTINSQPFDHAFHHQGSASAQIISH-QVP 195
           FQE++R FWMPRLLQK   SSSS+ S  +Q   +   PFD    H  S    I SH   P
Sbjct: 133 FQELVRRFWMPRLLQKAKESSSSAMSIQNQATPM---PFDGVSQH--STVGTIPSHSHTP 187

Query: 196 Y------DRGVIDHQELNSSSDSEHGIGTSTSCISSSESMNFSQVSQ-FSEYPTGGDHFH 248
           +      + G     +   +SDSEH  G   SCIS SES NF +V Q F    T    +H
Sbjct: 188 WQGPCMNEAGPTYMDQHEQNSDSEHNNG---SCISLSESANFPKVPQHFGR--TTITQYH 242

Query: 249 ASNNDSSEYNTFAKDFCQFDSNCYDMENISQPETMPAPLA----GDF----NNWVQEYDL 300
           A NN+  ++ TF  D     +N Y+M+N   P T  A  A    GD     +NWV   D 
Sbjct: 243 ALNNN--DFGTFTYDGYNVSNNVYEMDNFKTPTTRVAEDAQYPTGDCQMVGSNWVNS-DF 299

Query: 301 VDNMW 305
             NMW
Sbjct: 300 ACNMW 304

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255640165|gb|ACU20373.1| unknown [Glycine max]

 Score =  296 bits (758), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 174/303 (57%), Positives = 199/303 (65%), Gaps = 25/303 (8%)

Query: 17  DSDQLRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKR 76
           D ++LRRGPWTLEED LL QYIS H EGRWNLLAKRSGLKRTGKSCRLRWLN LKPDVKR
Sbjct: 13  DDNELRRGPWTLEEDNLLSQYISSHGEGRWNLLAKRSGLKRTGKSCRLRWLNCLKPDVKR 72

Query: 77  GNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARHLKIDANSTT 136
           GNLTPQEQ+ ILELHSKWGNRWSKIAQ+LPGRTDNEIKNYWRTR+QKQA HLKID +S  
Sbjct: 73  GNLTPQEQLIILELHSKWGNRWSKIAQNLPGRTDNEIKNYWRTRIQKQAGHLKIDTDSRE 132

Query: 137 FQEIIRCFWMPRLLQKMDTSSSSSPSALSQNPTINSQPFDHAFHHQGSASAQIISH---Q 193
           FQE++R FWMPRLLQK   SSSS+ S  +Q   +   PFD    H    +  + SH   Q
Sbjct: 133 FQELVRRFWMPRLLQKAKESSSSAMSIQNQATPM---PFDGVSQHSTVGTIPLHSHTPWQ 189

Query: 194 VPY--DRGVIDHQELNSSSDSEHGIGTSTSCISSSESMNFSQVSQ-FSEYPTGGDHFHAS 250
            P   + G     +   +SDSEH  G   SCIS SES NF +V Q F    T    +HA 
Sbjct: 190 GPCMNEAGPTYMDQHEQNSDSEHDNG---SCISLSESANFPKVPQHFGR--TTITQYHAL 244

Query: 251 NNDSSEYNTFAKDFCQFDSNCYDMENISQPETMPAPLA----GDF----NNWVQEYDLVD 302
           NN+  ++ TF  D     +N Y+M+N   P T  A  A    GD     +NWV   D   
Sbjct: 245 NNN--DFGTFTYDGYNVSNNVYEMDNFKTPTTRVAEDAQYPTGDCQMVGSNWVNS-DFAC 301

Query: 303 NMW 305
           NMW
Sbjct: 302 NMW 304

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|294847482|gb|ADF43752.1| MYB [Camellia sinensis]

 Score =  294 bits (753), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 170/268 (63%), Positives = 192/268 (71%), Gaps = 21/268 (7%)

Query: 20  QLRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNL 79
           +LRRGPWTLEEDTLLI YI+ H EGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNL
Sbjct: 17  ELRRGPWTLEEDTLLIHYIACHGEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNL 76

Query: 80  TPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARHLKIDANSTTFQE 139
           TP+EQ+ ILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARHLKID NS  FQE
Sbjct: 77  TPEEQLLILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARHLKIDPNSAAFQE 136

Query: 140 IIRCFWMPRLLQKMDTSSSSSPSALSQNPTINSQPFDHAFHHQGSASAQIISHQVPYDRG 199
           +IRCFWMPRL+QK+  SSS S   LSQN  I S+P      +  S   Q+   +  Y   
Sbjct: 137 VIRCFWMPRLIQKIRGSSSPSSVILSQNLAIASRPLI----NHSSLPPQVSPQENVYTSE 192

Query: 200 V---IDHQELNSSSDSEHGIGTSTSCISSSESMNFSQVSQFSEYPTGGDHFHASNNDSSE 256
               +DH   NSS   EH   +++  +SSSESMN S ++Q SEYP        +  +S +
Sbjct: 193 TTNNLDHHVKNSS--LEH---STSPSVSSSESMNISHMTQVSEYPI------EAMGNSHD 241

Query: 257 YNTFAKDFC-QFDSNCYDME--NISQPE 281
           YNTF K  C   D+  YDME  NIS  E
Sbjct: 242 YNTFLKGGCYNVDNISYDMETFNISSVE 269

Source: Camellia sinensis

Species: Camellia sinensis

Genus: Camellia

Family: Theaceae

Order: Ericales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351726150|ref|NP_001235837.1| MYB transcription factor MYB184 [Glycine max] gi|110931686|gb|ABH02842.1| MYB transcription factor MYB184 [Glycine max]

 Score =  288 bits (738), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 157/261 (60%), Positives = 181/261 (69%), Gaps = 9/261 (3%)

Query: 17  DSDQLRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKR 76
           D ++LRRGPWTLEED LL QYI  H EGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKR
Sbjct: 13  DDNELRRGPWTLEEDNLLSQYIFNHGEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKR 72

Query: 77  GNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARHLKIDANSTT 136
           GNLTPQEQ+ ILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTR+QKQARHLKI  +S  
Sbjct: 73  GNLTPQEQLIILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRIQKQARHLKIYTDSRE 132

Query: 137 FQEIIRCFWMPRLLQKMDTSSSSSPSALSQNPTINSQPFDHAFHHQGSASAQIISHQVPY 196
           FQE++R FWMPRLLQK   SSSS+ S   QN  I   PFD+   H    +          
Sbjct: 133 FQELVRRFWMPRLLQKAKESSSSNMSI--QNQAI-PMPFDYVSQHLTVGTIPPWQGPCMN 189

Query: 197 DRGVIDHQELNSSSDSEHGIGTSTSCISSSESMNFSQVSQFSEYPTGGDHFHASNNDSSE 256
           + G     +   +SDSEH  G   SCIS SES N  +V Q   + T    FHA N  +++
Sbjct: 190 EAGPTYMDQHEQNSDSEHNNG---SCISLSESANIPKVPQHFGH-TTITQFHALN--TND 243

Query: 257 YNTFAKDFCQFDSNCYDMENI 277
           + TF  +    ++N Y+M+N 
Sbjct: 244 FGTFTYEGYNVNNNVYEMDNF 264

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255636342|gb|ACU18510.1| unknown [Glycine max]

 Score =  287 bits (735), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 168/297 (56%), Positives = 192/297 (64%), Gaps = 18/297 (6%)

Query: 17  DSDQLRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKR 76
           D ++LRRGPWTLEED LL QYI  H EGRWNL AKRSGLKRTGKSCRLRWLNYLKPDVKR
Sbjct: 13  DDNELRRGPWTLEEDNLLSQYIFNHGEGRWNLPAKRSGLKRTGKSCRLRWLNYLKPDVKR 72

Query: 77  GNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARHLKIDANSTT 136
           GNLTPQEQ+ ILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTR+QKQARHLKI  +S  
Sbjct: 73  GNLTPQEQLIILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRIQKQARHLKIYTDSRE 132

Query: 137 FQEIIRCFWMPRLLQKMDTSSSSSPSALSQNPTINSQPFDHAFHHQGSASAQIISHQVPY 196
           FQE +R FWMPRLLQK   SSSS+ S   QN  I   PFD+   H    +          
Sbjct: 133 FQEPVRRFWMPRLLQKAKESSSSNMSI--QNQAI-PMPFDYVSQHLTVGTIPPWQGPCMN 189

Query: 197 DRGVIDHQELNSSSDSEHGIGTSTSCISSSESMNFSQVSQFSEYPTGGDHFHASNNDSSE 256
           + G     +   +SDSEH  G   SCIS SES N  +V Q   + T    FHA N  +++
Sbjct: 190 EAGPTYMDQHEQNSDSEHNNG---SCISLSESANIPKVPQHFGH-TTITQFHALN--TND 243

Query: 257 YNTFAKDFCQFDSNCYDMENISQPETMPAPLA----GDF----NNWVQEYDLVDNMW 305
           + TF  +    ++N Y+M+N     T  A  A    GD     +NWV   D   NMW
Sbjct: 244 FGTFTYEGYNVNNNVYEMDNFKTTTTWVAEDAQYPIGDCQMVGSNWVNN-DFACNMW 299

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255588387|ref|XP_002534590.1| DNA binding protein, putative [Ricinus communis] gi|223524969|gb|EEF27793.1| DNA binding protein, putative [Ricinus communis]

 Score =  285 bits (730), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 162/264 (61%), Positives = 186/264 (70%), Gaps = 31/264 (11%)

Query: 1   MSSFSKS-----STSSIYGENDSDQLRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGL 55
           MSS SKS     S+      +D  +LRRGPWTLEEDTLL+  I+ H EGRWNLLAKR+GL
Sbjct: 1   MSSLSKSRVSNNSSDEADAPDDHHELRRGPWTLEEDTLLVHCIASHGEGRWNLLAKRAGL 60

Query: 56  KRTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKN 115
           +RTGKSCRLRWLNYLKPDVKRGNLTPQEQ+ IL+LHSK GNRWSKIAQHLPGRTDNEIKN
Sbjct: 61  RRTGKSCRLRWLNYLKPDVKRGNLTPQEQLLILDLHSKLGNRWSKIAQHLPGRTDNEIKN 120

Query: 116 YWRTRVQKQARHLKIDANSTTFQEIIRCFWMPRLLQKMD-------------TSSSSSPS 162
           YWRTRVQKQARHLKIDANST FQEI+RCFW+PRLLQK++              SSSSS +
Sbjct: 121 YWRTRVQKQARHLKIDANSTAFQEIVRCFWIPRLLQKIEGSTSSPSCSCSSSFSSSSSSA 180

Query: 163 ALSQNPTINSQPFDHAFHHQGSASAQIIS----HQVPYDRGVIDHQELNS----SSDSEH 214
            LSQN  + SQP D +  H    +   +      ++     +I+   L      +SDSE 
Sbjct: 181 VLSQNSAV-SQPVDCSHVHNLPLTPPSLPPLPRQEISGQGKLIEIHNLEGRPEHNSDSEQ 239

Query: 215 GIGTSTSCISSS-ESMNFSQVSQF 237
           G   STSCISSS ESMN SQ+SQ 
Sbjct: 240 G---STSCISSSTESMNISQISQL 260

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	324
TAIR|locus:2199357	286	MYB62 "myb domain protein 62"	0.438	0.496	0.739	2.5e-58
TAIR|locus:2032975	283	MYB116 "myb domain protein 116	0.432	0.494	0.742	1.7e-57
TAIR|locus:2065226	273	MYB2 "AT2G47190" [Arabidopsis	0.429	0.509	0.678	4.9e-53
TAIR|locus:2202633	243	MYB112 "myb domain protein 112	0.413	0.551	0.686	5.6e-52
TAIR|locus:2084269	323	MYB108 "myb domain protein 108	0.475	0.476	0.6	3.1e-51
TAIR|locus:2170573	214	MYB24 "myb domain protein 24"	0.336	0.509	0.727	6e-48
TAIR|locus:2089159	226	MYB21 "myb domain protein 21"	0.376	0.539	0.655	1e-45
TAIR|locus:2084168	206	MYB57 "myb domain protein 57"	0.361	0.567	0.633	2.5e-42
TAIR|locus:2140847	261	MYB79 "myb domain protein 79"	0.324	0.402	0.695	1.2e-40
TAIR|locus:2087183	269	MYB305 "myb domain protein 305	0.351	0.423	0.649	2.6e-40

TAIR|locus:2199357 MYB62 "myb domain protein 62" [Arabidopsis thaliana (taxid:3702)]

 Score = 599 (215.9 bits), Expect = 2.5e-58, P = 2.5e-58
 Identities = 105/142 (73%), Positives = 125/142 (88%)

Query:    13 YGENDSDQLRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKP 72
             + E++ ++LRRGPWTLEEDTLL  YI  + EGRWN +AK +GLKRTGKSCRLRWLNYLKP
Sbjct:    11 FKESEDEELRRGPWTLEEDTLLTNYILHNGEGRWNHVAKCAGLKRTGKSCRLRWLNYLKP 70

Query:    73 DVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARHLKIDA 132
             D++RGNLTPQEQ+ ILELHSKWGNRWSKIAQ+LPGRTDNEIKNYWRTRVQKQAR L I++
Sbjct:    71 DIRRGNLTPQEQLLILELHSKWGNRWSKIAQYLPGRTDNEIKNYWRTRVQKQARQLNIES 130

Query:   133 NSTTFQEIIRCFWMPRLLQKMD 154
             NS  F + +R FW+PRL++KM+
Sbjct:   131 NSDKFFDAVRSFWVPRLIEKME 152

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009686 "gibberellin biosynthetic process" evidence=IMP

GO:0016036 "cellular response to phosphate starvation" evidence=IEP

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

TAIR|locus:2032975 MYB116 "myb domain protein 116" [Arabidopsis thaliana (taxid:3702)]

 Score = 591 (213.1 bits), Expect = 1.7e-57, P = 1.7e-57
 Identities = 104/140 (74%), Positives = 120/140 (85%)

Query:    14 GENDSDQLRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPD 73
             G  +  + R+GPWTLEEDTLL  YIS + EGRWNLLAK SGLKR GKSCRLRWLNYLKPD
Sbjct:    11 GNEEGAEQRKGPWTLEEDTLLTNYISHNGEGRWNLLAKSSGLKRAGKSCRLRWLNYLKPD 70

Query:    74 VKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARHLKIDAN 133
             +KRGNLTPQEQ+ ILELHSKWGNRWSKI+++LPGRTDN+IKNYWRTRVQKQAR L ID+N
Sbjct:    71 IKRGNLTPQEQLLILELHSKWGNRWSKISKYLPGRTDNDIKNYWRTRVQKQARQLNIDSN 130

Query:   134 STTFQEIIRCFWMPRLLQKM 153
             S  F E++R FW PRL+ ++
Sbjct:   131 SHKFIEVVRSFWFPRLINEI 150

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2065226 MYB2 "AT2G47190" [Arabidopsis thaliana (taxid:3702)]

 Score = 549 (198.3 bits), Expect = 4.9e-53, P = 4.9e-53
 Identities = 95/140 (67%), Positives = 119/140 (85%)

Query:    15 ENDSDQLRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDV 74
             E DSD +R+GPWT EED +L+ ++S H + RWN +A+ SGLKRTGKSCRLRWLNYL+PDV
Sbjct:    15 EEDSD-VRKGPWTEEEDAILVNFVSIHGDARWNHIARSSGLKRTGKSCRLRWLNYLRPDV 73

Query:    75 KRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARHLKIDANS 134
             +RGN+T +EQ  IL+LHS WGNRWSKIAQ+LPGRTDNEIKNYWRTRVQKQA+HL+ D NS
Sbjct:    74 RRGNITLEEQFMILKLHSLWGNRWSKIAQYLPGRTDNEIKNYWRTRVQKQAKHLRCDVNS 133

Query:   135 TTFQEIIRCFWMPRLLQKMD 154
               F+E +R  WMPRL+++++
Sbjct:   134 NLFKETMRNVWMPRLVERIN 153

GO:0003677 "DNA binding" evidence=ISS;IDA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009737 "response to abscisic acid stimulus" evidence=IEP;RCA;IMP

GO:0005516 "calmodulin binding" evidence=IDA

GO:0009651 "response to salt stress" evidence=IEP

GO:0009723 "response to ethylene stimulus" evidence=IEP;RCA

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0007165 "signal transduction" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009414 "response to water deprivation" evidence=IEP;RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0010260 "organ senescence" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

GO:0001046 "core promoter sequence-specific DNA binding" evidence=IDA

GO:0016036 "cellular response to phosphate starvation" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

TAIR|locus:2202633 MYB112 "myb domain protein 112" [Arabidopsis thaliana (taxid:3702)]

 Score = 539 (194.8 bits), Expect = 5.6e-52, P = 5.6e-52
 Identities = 92/134 (68%), Positives = 114/134 (85%)

Query:    20 QLRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNL 79
             ++RRGPWT+EED  L+ YIS H EGRWN L++ +GL RTGKSCRLRWLNYL+PD++RG++
Sbjct:    31 EIRRGPWTVEEDMKLVSYISLHGEGRWNSLSRSAGLNRTGKSCRLRWLNYLRPDIRRGDI 90

Query:    80 TPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARHLKIDANSTTFQE 139
             + QEQ  ILELHS+WGNRWSKIAQHLPGRTDNEIKNYWRTRVQK A+ LK D NS  F++
Sbjct:    91 SLQEQFIILELHSRWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKHAKLLKCDVNSKQFKD 150

Query:   140 IIRCFWMPRLLQKM 153
              I+  WMPRL++++
Sbjct:   151 TIKHLWMPRLIERI 164

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0009651 "response to salt stress" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0009830 "cell wall modification involved in abscission" evidence=RCA

TAIR|locus:2084269 MYB108 "myb domain protein 108" [Arabidopsis thaliana (taxid:3702)]

 Score = 532 (192.3 bits), Expect = 3.1e-51, P = 3.1e-51
 Identities = 93/155 (60%), Positives = 120/155 (77%)

Query:    15 ENDSDQLRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDV 74
             E++ D L+RGPWT EED  L+ YI+ + EGRWN L++ +GL+RTGKSCRLRWLNYL+PDV
Sbjct:    14 EDEMD-LKRGPWTAEEDFKLMNYIATNGEGRWNSLSRCAGLQRTGKSCRLRWLNYLRPDV 72

Query:    75 KRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARHLKIDANS 134
             +RGN+T +EQ+ ILELHS+WGNRWSKIAQ+LPGRTDNEIKNYWRTRVQK A+ LK D NS
Sbjct:    73 RRGNITLEEQLLILELHSRWGNRWSKIAQYLPGRTDNEIKNYWRTRVQKHAKQLKCDVNS 132

Query:   135 TTFQEIIRCFWMPRLLQKMDTXXXXXXXXXXQNPT 169
               F++ ++  WMPRL++++ +             T
Sbjct:   133 QQFKDTMKYLWMPRLVERIQSASASSAAAATTTTT 167

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0009620 "response to fungus" evidence=IMP

GO:0009651 "response to salt stress" evidence=IEP

GO:0009723 "response to ethylene stimulus" evidence=IEP;RCA

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP;RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

GO:0052542 "defense response by callose deposition" evidence=RCA

TAIR|locus:2170573 MYB24 "myb domain protein 24" [Arabidopsis thaliana (taxid:3702)]

 Score = 480 (174.0 bits), Expect = 6.0e-48, Sum P(2) = 6.0e-48
 Identities = 80/110 (72%), Positives = 100/110 (90%)

Query:    14 GENDSDQLRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPD 73
             G  D++ +R+GPWT+EED +LI YI+ H EG WN LAK +GLKRTGKSCRLRWLNYL+PD
Sbjct:    11 GSGDAE-VRKGPWTMEEDLILINYIANHGEGVWNSLAKSAGLKRTGKSCRLRWLNYLRPD 69

Query:    74 VKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQK 123
             V+RGN+TP+EQ++I+ELH+KWGNRWSKIA+HLPGRTDNEIKN+WRT++QK
Sbjct:    70 VRRGNITPEEQLTIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTKIQK 119

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0048443 "stamen development" evidence=IMP

GO:0009740 "gibberellic acid mediated signaling pathway" evidence=IEP

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=IEP

GO:0080086 "stamen filament development" evidence=IGI

TAIR|locus:2089159 MYB21 "myb domain protein 21" [Arabidopsis thaliana (taxid:3702)]

 Score = 480 (174.0 bits), Expect = 1.0e-45, P = 1.0e-45
 Identities = 80/122 (65%), Positives = 102/122 (83%)

Query:    14 GENDSDQLRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPD 73
             G +   ++R+GPWT+EED +LI YI+ H +G WN LAK +GLKRTGKSCRLRWLNYL+PD
Sbjct:    13 GSSAEAEVRKGPWTMEEDLILINYIANHGDGVWNSLAKSAGLKRTGKSCRLRWLNYLRPD 72

Query:    74 VKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARHLKIDAN 133
             V+RGN+TP+EQ+ I+ELH+KWGNRWSKIA+HLPGRTDNEIKN+WRTR+QK  +   +   
Sbjct:    73 VRRGNITPEEQLIIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQKYIKQSDVTTT 132

Query:   134 ST 135
             S+
Sbjct:   133 SS 134

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0048443 "stamen development" evidence=RCA;IMP

GO:0009740 "gibberellic acid mediated signaling pathway" evidence=IEP

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=IEP

GO:0080086 "stamen filament development" evidence=IGI

GO:0048441 "petal development" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

TAIR|locus:2084168 MYB57 "myb domain protein 57" [Arabidopsis thaliana (taxid:3702)]

 Score = 448 (162.8 bits), Expect = 2.5e-42, P = 2.5e-42
 Identities = 76/120 (63%), Positives = 99/120 (82%)

Query:    15 ENDSDQLRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDV 74
             + +   +R+GPWT+EED +L  YI  H EG WN +AK SGLKRTGKSCRLRWLNYL+PDV
Sbjct:    19 KEEEGTVRKGPWTMEEDFILFNYILNHGEGLWNSVAKASGLKRTGKSCRLRWLNYLRPDV 78

Query:    75 KRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARHLKIDANS 134
             +RGN+T +EQ+ I++LH+K GNRWSKIA+HLPGRTDNEIKN+WRT++Q   RH+K+ + +
Sbjct:    79 RRGNITEEEQLLIIQLHAKLGNRWSKIAKHLPGRTDNEIKNFWRTKIQ---RHMKVSSEN 135

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0009740 "gibberellic acid mediated signaling pathway" evidence=IEP

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=IEP

GO:0080086 "stamen filament development" evidence=IGI

TAIR|locus:2140847 MYB79 "myb domain protein 79" [Arabidopsis thaliana (taxid:3702)]

 Score = 432 (157.1 bits), Expect = 1.2e-40, P = 1.2e-40
 Identities = 73/105 (69%), Positives = 89/105 (84%)

Query:    22 RRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTP 81
             R+GPWT EED LLI+Y+  H EGRWN ++K +GLKR GKSCRLRW+NYL+PD+KRG +TP
Sbjct:     7 RKGPWTAEEDRLLIEYVRVHGEGRWNSVSKLAGLKRNGKSCRLRWVNYLRPDLKRGQITP 66

Query:    82 QEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQAR 126
              E+  ILELH+KWGNRWS IA+ LPGRTDNEIKNYWRT  +K+A+
Sbjct:    67 HEESIILELHAKWGNRWSTIARSLPGRTDNEIKNYWRTHFKKKAK 111

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2087183 MYB305 "myb domain protein 305" [Arabidopsis thaliana (taxid:3702)]

 Score = 429 (156.1 bits), Expect = 2.6e-40, P = 2.6e-40
 Identities = 74/114 (64%), Positives = 89/114 (78%)

Query:    22 RRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTP 81
             R+GPWT EED LLI Y+  H EGRWN +A+ +GLKR GKSCRLRW+NYL+PD+KRG +TP
Sbjct:    19 RKGPWTAEEDRLLIDYVQLHGEGRWNSVARLAGLKRNGKSCRLRWVNYLRPDLKRGQITP 78

Query:    82 QEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARHLKIDANST 135
              E+  ILELH+KWGNRWS IA+ LPGRTDNEIKNYWRT  +K+ +     A  T
Sbjct:    79 HEETIILELHAKWGNRWSTIARSLPGRTDNEIKNYWRTHFKKKTKSPTNSAEKT 132

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	324
PLN03212	249	PLN03212, PLN03212, Transcription repressor MYB5;	2e-41
PLN03091	459	PLN03091, PLN03091, hypothetical protein; Provisio	5e-37
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	5e-14
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	4e-13
smart00717	49	smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII	3e-12
COG5147	512	COG5147, REB1, Myb superfamily proteins, including	1e-10
cd00167	45	cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-	1e-10
smart00717	49	smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII	5e-10
cd00167	45	cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-	5e-10
pfam13921	59	pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding do	7e-10
cd11660	50	cd11660, SANT_TRF, Telomere repeat binding factor-	2e-04
pfam13921	59	pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding do	3e-04

>gnl|CDD|178751 PLN03212, PLN03212, Transcription repressor MYB5; Provisional

 Score =  144 bits (363), Expect = 2e-41
 Identities = 65/114 (57%), Positives = 82/114 (71%)

Query: 21  LRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLT 80
           ++RGPWT+EED +L+ +I +  EGRW  L KR+GL R GKSCRLRW+NYL+P VKRG +T
Sbjct: 23  MKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGIT 82

Query: 81  PQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARHLKIDANS 134
             E+  IL LH   GNRWS IA  +PGRTDNEIKNYW T ++K+     ID  +
Sbjct: 83  SDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKKLLRQGIDPQT 136

Length = 249

>gnl|CDD|215570 PLN03091, PLN03091, hypothetical protein; Provisional

 Score =  137 bits (346), Expect = 5e-37
 Identities = 61/115 (53%), Positives = 88/115 (76%)

Query: 20  QLRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNL 79
           +LR+G W+ EED  L+++I+++  G W+ + K++GL+R GKSCRLRW+NYL+PD+KRG  
Sbjct: 11  KLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTF 70

Query: 80  TPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARHLKIDANS 134
           + QE+  I+ELH+  GNRWS+IA  LPGRTDNEIKN W + ++K+ R   ID N+
Sbjct: 71  SQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPNT 125

Length = 459

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 65.2 bits (160), Expect = 5e-14
 Identities = 24/48 (50%), Positives = 30/48 (62%), Gaps = 1/48 (2%)

Query: 23 RGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYL 70
          RGPWT EED LLI+ + +H  G W+ +AK     RT   C+ RW NYL
Sbjct: 1  RGPWTPEEDELLIEAVKKHGNGNWSKIAKHLP-GRTDNQCKNRWNNYL 47

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 62.5 bits (153), Expect = 4e-13
 Identities = 25/45 (55%), Positives = 30/45 (66%), Gaps = 1/45 (2%)

Query: 76  RGNLTPQEQMSILELHSKWGNR-WSKIAQHLPGRTDNEIKNYWRT 119
           RG  TP+E   ++E   K GN  WSKIA+HLPGRTDN+ KN W  
Sbjct: 1   RGPWTPEEDELLIEAVKKHGNGNWSKIAKHLPGRTDNQCKNRWNN 45

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

 Score = 59.9 bits (146), Expect = 3e-12
 Identities = 22/50 (44%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 23 RGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKP 72
          +G WT EED LLI+ + ++ +  W  +AK     RT + CR RW N LKP
Sbjct: 1  KGEWTEEEDELLIELVKKYGKNNWEKIAKELP-GRTAEQCRERWRNLLKP 49

Length = 49

>gnl|CDD|227476 COG5147, REB1, Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

 Score = 61.7 bits (150), Expect = 1e-10
 Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 1/94 (1%)

Query: 24  GPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQE 83
           G W   ED  L   + +     W+ +A       TGK    RW N+L P +K+ N + +E
Sbjct: 21  GSWKRTEDEDLKALVKKLGPNNWSKVASLLI-SSTGKQSSNRWNNHLNPQLKKKNWSEEE 79

Query: 84  QMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYW 117
              +++L  + G +WS IA +   RT  +    +
Sbjct: 80  DEQLIDLDKELGTQWSTIADYKDRRTAQQCVERY 113

Length = 512

>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

 Score = 55.3 bits (134), Expect = 1e-10
 Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 25 PWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYL 70
          PWT EED LL++ + ++ +  W  +AK     RT K CR RW N L
Sbjct: 1  PWTEEEDELLLEAVKKYGKNNWEKIAKELP-GRTPKQCRERWRNLL 45

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA. Length = 45

>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

 Score = 54.2 bits (131), Expect = 5e-10
 Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 1/45 (2%)

Query: 76  RGNLTPQEQMSILELHSKWG-NRWSKIAQHLPGRTDNEIKNYWRT 119
           +G  T +E   ++EL  K+G N W KIA+ LPGRT  + +  WR 
Sbjct: 1   KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWRN 45

Length = 49

>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

 Score = 54.1 bits (131), Expect = 5e-10
 Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 1/41 (2%)

Query: 80  TPQEQMSILELHSKWG-NRWSKIAQHLPGRTDNEIKNYWRT 119
           T +E   +LE   K+G N W KIA+ LPGRT  + +  WR 
Sbjct: 3   TEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRN 43

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA. Length = 45

>gnl|CDD|206092 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding domain

 Score = 53.9 bits (130), Expect = 7e-10
 Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 3/58 (5%)

Query: 26 WTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQE 83
          WT EED  L++ + ++    W  +A+   L RT  +CR RW   L+P   RG  T +E
Sbjct: 1  WTEEEDEKLLKLVEKYG-NDWKQIAEE--LGRTPSACRDRWRRKLRPKRSRGPWTKEE 55

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 59

>gnl|CDD|212558 cd11660, SANT_TRF, Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family

 Score = 38.3 bits (90), Expect = 2e-04
 Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 2/49 (4%)

Query: 25 PWTLEEDTLLIQYISRHSEGRWNLLAKRSGL--KRTGKSCRLRWLNYLK 71
           WT EED  L++ + ++  G W  + K       RT    + +W N  K
Sbjct: 2  KWTDEEDEALVEGVEKYGVGNWAKILKDYFFVNNRTSVDLKDKWRNLKK 50

Human telomere repeat binding factors, TRF1 and TRF2, function as part of the 6 component shelterin complex. TRF2 binds DNA and recruits RAP1 (via binding to the RAP1 protein c-terminal (RCT)) and TIN2 in the protection of telomeres from DNA repair machinery. Metazoan shelterin consists of 3 DNA binding proteins (TRF2, TRF1, and POT1) and 3 recruited proteins that bind to one or more of these DNA-binding proteins (RAP1, TIN2, TPP1). Schizosaccharomyces pombe TAZ1 is an orthlog and binds RAP1. Human TRF1 and TRF2 bind double-stranded DNA. hTRF2 consists of a basic N-terminus, a TRF homology domain, the RAP1 binding motif (RBM), the TIN2 binding motif (TBM) and a myb-like DNA binding domain, SANT, named after 'SWI3, ADA2, N-CoR and TFIIIB', several factors that share this domain. Tandem copies of the domain bind telomeric DNA tandem repeats as part of the capping complex. The single myb-like domain of TRF-type proteins is similar to the tandem myb_like domains found in yeast RAP1. Length = 50

>gnl|CDD|206092 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding domain

 Score = 37.7 bits (88), Expect = 3e-04
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 8/58 (13%)

Query: 80  TPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARHLKIDANSTTF 137
           T +E   +L+L  K+GN W +IA+ L GRT +  ++ WR       R L+   +   +
Sbjct: 2   TEEEDEKLLKLVEKYGNDWKQIAEEL-GRTPSACRDRWR-------RKLRPKRSRGPW 51

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 59

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	324
KOG0048	238	consensus Transcription factor, Myb superfamily [T	100.0
PLN03212	249	Transcription repressor MYB5; Provisional	100.0
PLN03091	459	hypothetical protein; Provisional	100.0
KOG0049	939	consensus Transcription factor, Myb superfamily [T	99.83
KOG0049	939	consensus Transcription factor, Myb superfamily [T	99.83
PF13921	60	Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB:	99.67
COG5147	512	REB1 Myb superfamily proteins, including transcrip	99.56
KOG0050	617	consensus mRNA splicing protein CDC5 (Myb superfam	99.54
KOG0051	607	consensus RNA polymerase I termination factor, Myb	99.47
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	99.43
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	99.42
PLN03212	249	Transcription repressor MYB5; Provisional	99.33
KOG0048	238	consensus Transcription factor, Myb superfamily [T	99.32
PLN03091	459	hypothetical protein; Provisional	99.3
PF13921	60	Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB:	99.28
smart00717	49	SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi	99.22
smart00717	49	SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi	99.11
cd00167	45	SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do	99.1
cd00167	45	SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do	98.97
KOG0051	607	consensus RNA polymerase I termination factor, Myb	98.89
COG5147	512	REB1 Myb superfamily proteins, including transcrip	98.5
KOG0050	617	consensus mRNA splicing protein CDC5 (Myb superfam	98.03
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	97.94
KOG0457	438	consensus Histone acetyltransferase complex SAGA/A	97.79
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	97.76
KOG0457	438	consensus Histone acetyltransferase complex SAGA/A	97.67
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	97.5
PF13325	199	MCRS_N: N-terminal region of micro-spherule protei	97.31
COG5259	531	RSC8 RSC chromatin remodeling complex subunit RSC8	97.3
KOG1279	506	consensus Chromatin remodeling factor subunit and	97.09
PF13837	90	Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain;	97.02
KOG1279	506	consensus Chromatin remodeling factor subunit and	96.98
COG5259	531	RSC8 RSC chromatin remodeling complex subunit RSC8	96.93
PF08914	65	Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR0150	96.86
PF13837	90	Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain;	96.85
PRK13923	170	putative spore coat protein regulator protein YlbO	96.7
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	96.55
PF13873	78	Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain	96.31
PF08914	65	Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR0150	96.29
PLN03142	1033	Probable chromatin-remodeling complex ATPase chain	96.07
COG5114	432	Histone acetyltransferase complex SAGA/ADA, subuni	95.95
COG5114	432	Histone acetyltransferase complex SAGA/ADA, subuni	95.92
PF13873	78	Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain	95.82
PRK13923	170	putative spore coat protein regulator protein YlbO	95.03
PF09111	118	SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain	92.9
KOG2656	445	consensus DNA methyltransferase 1-associated prote	92.84
KOG4282	345	consensus Transcription factor GT-2 and related pr	92.69
PF12776	96	Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain;	92.63
COG5118	507	BDP1 Transcription initiation factor TFIIIB, Bdp1	92.28
KOG1194	534	consensus Predicted DNA-binding protein, contains	89.68
PF08281	54	Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013	87.88
KOG4282	345	consensus Transcription factor GT-2 and related pr	87.81
PF09111	118	SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain	87.3
COG5118	507	BDP1 Transcription initiation factor TFIIIB, Bdp1	86.99
KOG4167	907	consensus Predicted DNA-binding protein, contains	86.18
PF11626	87	Rap1_C: TRF2-interacting telomeric protein/Rap1 -	85.46
KOG4329	445	consensus DNA-binding protein [General function pr	82.71
PF12776	96	Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain;	82.23

>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]

Probab=100.00  E-value=1.9e-34  Score=267.81  Aligned_cols=117  Identities=50%  Similarity=0.880  Sum_probs=110.9

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhCCCCCcccccceeeccccCCCcCCCCCHHHHHHHHHHHhhcCCC
Q 020603           18 SDQLRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNR   97 (324)
Q Consensus        18 ~~~lkkg~WT~EED~~L~~lV~k~G~~~W~~IA~~l~~~Rt~~QCr~Rw~n~L~p~ikkg~WT~EED~~Ll~lv~~~G~k   97 (324)
                      ++.++||+||+|||++|+++|++||.++|..|++.+|++|++++||+||.|||+|++++|.||+|||++|++|+.++|++
T Consensus         4 k~~~~kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~GKSCRlRW~NyLrP~ikrg~fT~eEe~~Ii~lH~~~GNr   83 (238)
T KOG0048|consen    4 NPELVKGPWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRCGKSCRLRWTNYLRPDLKRGNFSDEEEDLIIKLHALLGNR   83 (238)
T ss_pred             CccccCCCCChHHHHHHHHHHHHhCCCCcchhhhhcCCCccchHHHHHhhcccCCCccCCCCCHHHHHHHHHHHHHHCcH
Confidence            45567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHhhCCCCCHHHHHHHHHHHHHHHHHhcCCCCCC
Q 020603           98 WSKIAQHLPGRTDNEIKNYWRTRVQKQARHLKIDANS  134 (324)
Q Consensus        98 Ws~IA~~lpgRT~~qcknRW~~~lkk~~r~~~~~~~s  134 (324)
                      |+.||++|||||++.|||+|+..++++++..++.+..
T Consensus        84 Ws~IA~~LPGRTDNeIKN~Wnt~lkkkl~~~~~~~~~  120 (238)
T KOG0048|consen   84 WSLIAGRLPGRTDNEVKNHWNTHLKKKLLKMGIDPST  120 (238)
T ss_pred             HHHHHhhCCCcCHHHHHHHHHHHHHHHHHHcCCCCCc
Confidence            9999999999999999999999999999888754443

>PLN03212 Transcription repressor MYB5; Provisional

Probab=100.00  E-value=5.5e-34  Score=263.37  Aligned_cols=118  Identities=55%  Similarity=1.043  Sum_probs=112.1

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhCCCCCcccccceeeccccCCCcCCCCCHHHHHHHHHHHhhcCC
Q 020603           17 DSDQLRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGN   96 (324)
Q Consensus        17 ~~~~lkkg~WT~EED~~L~~lV~k~G~~~W~~IA~~l~~~Rt~~QCr~Rw~n~L~p~ikkg~WT~EED~~Ll~lv~~~G~   96 (324)
                      .|.+++|++||+|||++|+++|++||..+|..||+.++.+|+++|||+||.++|+|.+++++||+|||++|++++.+||+
T Consensus        19 ~K~glKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCReRW~N~L~P~I~kgpWT~EED~lLlel~~~~Gn   98 (249)
T PLN03212         19 TKMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRLHRLLGN   98 (249)
T ss_pred             ccCCCcCCCCCHHHHHHHHHHHHHhCcccHHHHHHhhhcCCCcchHHHHHHHhhchhcccCCCChHHHHHHHHHHHhccc
Confidence            46889999999999999999999999889999999996689999999999999999999999999999999999999999


Q ss_pred             ChHHHHhhCCCCCHHHHHHHHHHHHHHHHHhcCCCCCC
Q 020603           97 RWSKIAQHLPGRTDNEIKNYWRTRVQKQARHLKIDANS  134 (324)
Q Consensus        97 kWs~IA~~lpgRT~~qcknRW~~~lkk~~r~~~~~~~s  134 (324)
                      +|..||+.|+|||+++|||||+.++++++.+.++.+..
T Consensus        99 KWs~IAk~LpGRTDnqIKNRWns~LrK~l~r~~i~p~~  136 (249)
T PLN03212         99 RWSLIAGRIPGRTDNEIKNYWNTHLRKKLLRQGIDPQT  136 (249)
T ss_pred             cHHHHHhhcCCCCHHHHHHHHHHHHhHHHHhcCCCCCC
Confidence            99999999999999999999999999998887776544

>PLN03091 hypothetical protein; Provisional

Probab=100.00  E-value=6.7e-33  Score=272.66  Aligned_cols=119  Identities=51%  Similarity=0.970  Sum_probs=113.4

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhCCCCCcccccceeeccccCCCcCCCCCHHHHHHHHHHHhhcCC
Q 020603           17 DSDQLRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGN   96 (324)
Q Consensus        17 ~~~~lkkg~WT~EED~~L~~lV~k~G~~~W~~IA~~l~~~Rt~~QCr~Rw~n~L~p~ikkg~WT~EED~~Ll~lv~~~G~   96 (324)
                      .|.+++||+||+|||++|+++|++||.++|..||+.++++|+++|||+||.++|+|.+++++||+|||++|++++++||+
T Consensus         8 ~KqklrKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~gRT~KQCRERW~NyLdP~IkKgpWT~EED~lLLeL~k~~Gn   87 (459)
T PLN03091          8 YKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIELHAVLGN   87 (459)
T ss_pred             cCCCCcCCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhccCcCcchHhHHHHhccCCcccCCCCCHHHHHHHHHHHHHhCc
Confidence            46789999999999999999999999999999999997789999999999999999999999999999999999999999


Q ss_pred             ChHHHHhhCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCh
Q 020603           97 RWSKIAQHLPGRTDNEIKNYWRTRVQKQARHLKIDANST  135 (324)
Q Consensus        97 kWs~IA~~lpgRT~~qcknRW~~~lkk~~r~~~~~~~s~  135 (324)
                      +|.+||++|+|||+++||+||+.+++++++..++.+...
T Consensus        88 KWskIAk~LPGRTDnqIKNRWnslLKKklr~~~I~p~t~  126 (459)
T PLN03091         88 RWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPNTH  126 (459)
T ss_pred             chHHHHHhcCCCCHHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence            999999999999999999999999999999888876544

>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.83  E-value=9.4e-21  Score=192.65  Aligned_cols=131  Identities=23%  Similarity=0.390  Sum_probs=121.5

Q ss_pred             CCCccccccccccCCCCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhCCCCCccccc-------------------
Q 020603            3 SFSKSSTSSIYGENDSDQLRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCR-------------------   63 (324)
Q Consensus         3 ~~s~~~~~s~~~~~~~~~lkkg~WT~EED~~L~~lV~k~G~~~W~~IA~~l~~~Rt~~QCr-------------------   63 (324)
                      ++|.-+|.++|++++.|+++|..|+.|||++|..+...++..+|.+||..++.+|+..||.                   
T Consensus       233 srS~~~~~~~W~n~l~P~~nk~~WS~EE~E~L~AiA~A~~~~~W~~IA~~Lgt~RS~yQC~~kF~t~~~~L~ekeWsEEe  312 (939)
T KOG0049|consen  233 SRSEWAVKSKWYNELNPKWNKEHWSNEEVEKLKALAEAPKFVSWPMIALNLGTNRSSYQCMEKFKTEVSQLSEKEWSEEE  312 (939)
T ss_pred             cCCHHHHHHHHhhhcCCccchhccChHHHHHHHHHHhccccccHHHHHHHhCCCcchHHHHHHHHHHHHHHHhhhcchhh
Confidence            4667799999999999999999999999999999999999999999999999779999997                   


Q ss_pred             -----------------------------------ceeeccccCCCcCCCCCHHHHHHHHHHHhhcCCC-hHHHHhhCCC
Q 020603           64 -----------------------------------LRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNR-WSKIAQHLPG  107 (324)
Q Consensus        64 -----------------------------------~Rw~n~L~p~ikkg~WT~EED~~Ll~lv~~~G~k-Ws~IA~~lpg  107 (324)
                                                         -||...|+|.+++|+||.+||.+|+.+|.+||++ |.+|-+.+||
T Consensus       313 d~kL~alV~~~~~nShI~w~kVV~Ympgr~~~qLI~R~~~~LdPsikhg~wt~~ED~~L~~AV~~Yg~kdw~k~R~~vPn  392 (939)
T KOG0049|consen  313 DTKLIALVKITSINSHIQWDKVVQYMPGRTRQQLITRFSHTLDPSVKHGRWTDQEDVLLVCAVSRYGAKDWAKVRQAVPN  392 (939)
T ss_pred             hHHHHHHHHHhhccCccchHHHHHhcCCcchhhhhhhheeccCccccCCCCCCHHHHHHHHHHHHhCccchhhHHHhcCC
Confidence                                               5888889999999999999999999999999965 9999999999


Q ss_pred             CCHHHHHHHHHHHHHHHHHhcCCCCC
Q 020603          108 RTDNEIKNYWRTRVQKQARHLKIDAN  133 (324)
Q Consensus       108 RT~~qcknRW~~~lkk~~r~~~~~~~  133 (324)
                      |++.|||.||.+.|...++.....-.
T Consensus       393 RSdsQcR~RY~nvL~~s~K~~rW~l~  418 (939)
T KOG0049|consen  393 RSDSQCRERYTNVLNRSAKVERWTLV  418 (939)
T ss_pred             ccHHHHHHHHHHHHHHhhccCceeec
Confidence            99999999999999998888766543

>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.83  E-value=6.2e-21  Score=193.95  Aligned_cols=122  Identities=23%  Similarity=0.400  Sum_probs=111.6

Q ss_pred             CCCCCccccccccccCCCCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhCCCCCcccccceeeccccCCCcCCCCC
Q 020603            1 MSSFSKSSTSSIYGENDSDQLRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLT   80 (324)
Q Consensus         1 m~~~s~~~~~s~~~~~~~~~lkkg~WT~EED~~L~~lV~k~G~~~W~~IA~~l~~~Rt~~QCr~Rw~n~L~p~ikkg~WT   80 (324)
                      |.-+++.+.+.+|....+|.+++|+||.+||.+|+.+|.+||.++|.+|-..+| +|+..|||+||.|.|+...|++.|+
T Consensus       338 mpgr~~~qLI~R~~~~LdPsikhg~wt~~ED~~L~~AV~~Yg~kdw~k~R~~vP-nRSdsQcR~RY~nvL~~s~K~~rW~  416 (939)
T KOG0049|consen  338 MPGRTRQQLITRFSHTLDPSVKHGRWTDQEDVLLVCAVSRYGAKDWAKVRQAVP-NRSDSQCRERYTNVLNRSAKVERWT  416 (939)
T ss_pred             cCCcchhhhhhhheeccCccccCCCCCCHHHHHHHHHHHHhCccchhhHHHhcC-CccHHHHHHHHHHHHHHhhccCcee
Confidence            445678889999999999999999999999999999999999999999999999 9999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcC-CChHHHHhhCCCCCHHHHHHHHHHHHHH
Q 020603           81 PQEQMSILELHSKWG-NRWSKIAQHLPGRTDNEIKNYWRTRVQK  123 (324)
Q Consensus        81 ~EED~~Ll~lv~~~G-~kWs~IA~~lpgRT~~qcknRW~~~lkk  123 (324)
                      -.||+.|+.+|.+|| ++|.+||..||.||..|.+.|=...+.-
T Consensus       417 l~edeqL~~~V~~YG~g~WakcA~~Lp~~t~~q~~rrR~R~~~~  460 (939)
T KOG0049|consen  417 LVEDEQLLYAVKVYGKGNWAKCAMLLPKKTSRQLRRRRLRLIAA  460 (939)
T ss_pred             ecchHHHHHHHHHHccchHHHHHHHccccchhHHHHHHHHHHHH
Confidence            999999999999999 7899999999999996665554443443

>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A

Probab=99.67  E-value=5.4e-17  Score=119.67  Aligned_cols=60  Identities=40%  Similarity=0.815  Sum_probs=55.3

Q ss_pred             CCHHHHHHHHHHHHHhCCCChHHHHHHhCCCCCcccccceeeccccCCCcCCCCCHHHHHHH
Q 020603           26 WTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQMSI   87 (324)
Q Consensus        26 WT~EED~~L~~lV~k~G~~~W~~IA~~l~~~Rt~~QCr~Rw~n~L~p~ikkg~WT~EED~~L   87 (324)
                      ||+|||++|+++|.+||. +|..||+.|+ .|+..||+.||.++|.+.+++++||++||++|
T Consensus         1 WT~eEd~~L~~~~~~~g~-~W~~Ia~~l~-~Rt~~~~~~r~~~~l~~~~~~~~wt~eEd~~L   60 (60)
T PF13921_consen    1 WTKEEDELLLELVKKYGN-DWKKIAEHLG-NRTPKQCRNRWRNHLRPKISRGPWTKEEDQRL   60 (60)
T ss_dssp             S-HHHHHHHHHHHHHHTS--HHHHHHHST-TS-HHHHHHHHHHTTSTTSTSSSSSHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCc-CHHHHHHHHC-cCCHHHHHHHHHHHCcccccCCCcCHHHHhcC
Confidence            999999999999999996 9999999998 89999999999999999999999999999987

...

>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

Probab=99.56  E-value=4.1e-15  Score=150.93  Aligned_cols=107  Identities=24%  Similarity=0.453  Sum_probs=102.2

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhCCCCCcccccceeeccccCCCcCCCCCHHHHHHHHHHHhhcCCCh
Q 020603           19 DQLRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRW   98 (324)
Q Consensus        19 ~~lkkg~WT~EED~~L~~lV~k~G~~~W~~IA~~l~~~Rt~~QCr~Rw~n~L~p~ikkg~WT~EED~~Ll~lv~~~G~kW   98 (324)
                      .+++.|.|+..||+.|..+|+++|..+|..||..+. .|+++||+.||.++++|.++++.|+.|||+.|+.+..++|..|
T Consensus        16 ~~~k~gsw~~~EDe~l~~~vk~l~~nnws~vas~~~-~~~~kq~~~rw~~~lnp~lk~~~~~~eed~~li~l~~~~~~~w   94 (512)
T COG5147          16 TKRKGGSWKRTEDEDLKALVKKLGPNNWSKVASLLI-SSTGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELGTQW   94 (512)
T ss_pred             ceecCCCCCCcchhHHHHHHhhcccccHHHHHHHhc-ccccccccchhhhhhchhcccccccHHHHHHHHHHHHhcCchh
Confidence            467889999999999999999999999999999999 6999999999999999999999999999999999999999999


Q ss_pred             HHHHhhCCCCCHHHHHHHHHHHHHHHHH
Q 020603           99 SKIAQHLPGRTDNEIKNYWRTRVQKQAR  126 (324)
Q Consensus        99 s~IA~~lpgRT~~qcknRW~~~lkk~~r  126 (324)
                      ..||..+++|+..+|.+||...+.....
T Consensus        95 stia~~~d~rt~~~~~ery~~~~~~~~s  122 (512)
T COG5147          95 STIADYKDRRTAQQCVERYVNTLEDLSS  122 (512)
T ss_pred             hhhccccCccchHHHHHHHHHHhhhhhc
Confidence            9999999999999999999988887655

>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

Probab=99.54  E-value=4.4e-15  Score=148.68  Aligned_cols=105  Identities=22%  Similarity=0.504  Sum_probs=99.9

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhCCCCCcccccceeeccccCCCcCCCCCHHHHHHHHHHHhhcCCChHH
Q 020603           21 LRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSK  100 (324)
Q Consensus        21 lkkg~WT~EED~~L~~lV~k~G~~~W~~IA~~l~~~Rt~~QCr~Rw~n~L~p~ikkg~WT~EED~~Ll~lv~~~G~kWs~  100 (324)
                      ++-|-|+.-||+.|..+|.+||...|.+|++.+. ..+++||+.||..+|+|.+++..|+.|||++|+.+...+...|..
T Consensus         5 ~kggvwrntEdeilkaav~kyg~nqws~i~sll~-~kt~rqC~~rw~e~ldp~i~~tews~eederlLhlakl~p~qwrt   83 (617)
T KOG0050|consen    5 IKGGVWRNTEDEVLKAAVMKYGKNQWSRIASLLN-RKTARQCKARWEEWLDPAIKKTEWSREEDERLLHLAKLEPTQWRT   83 (617)
T ss_pred             EecceecccHHHHHHHHHHHcchHHHHHHHHHHh-hcchhHHHHHHHHHhCHHHhhhhhhhhHHHHHHHHHHhcCCccch
Confidence            5779999999999999999999989999999999 889999999999999999999999999999999999999999999


Q ss_pred             HHhhCCCCCHHHHHHHHHHHHHHHHHh
Q 020603          101 IAQHLPGRTDNEIKNYWRTRVQKQARH  127 (324)
Q Consensus       101 IA~~lpgRT~~qcknRW~~~lkk~~r~  127 (324)
                      |+..| ||+.+||-.||++++-.....
T Consensus        84 Ia~i~-gr~~~qc~eRy~~ll~~~~s~  109 (617)
T KOG0050|consen   84 IADIM-GRTSQQCLERYNNLLDVYVSY  109 (617)
T ss_pred             HHHHh-hhhHHHHHHHHHHHHHHHHhh
Confidence            99999 999999999999988876544

>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]

Probab=99.47  E-value=9.3e-14  Score=142.57  Aligned_cols=106  Identities=25%  Similarity=0.487  Sum_probs=94.9

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhCCCCCcccccceeeccccCC--CcCCCCCHHHHHHHHHHHh-------
Q 020603           22 RRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPD--VKRGNLTPQEQMSILELHS-------   92 (324)
Q Consensus        22 kkg~WT~EED~~L~~lV~k~G~~~W~~IA~~l~~~Rt~~QCr~Rw~n~L~p~--ikkg~WT~EED~~Ll~lv~-------   92 (324)
                      .+|.||+||++.|..+|..+|. +|.+|++.|+  |.+..||+||+++....  .+++.||.||+++|+++|.       
T Consensus       383 ~rg~wt~ee~eeL~~l~~~~g~-~W~~Ig~~lg--r~P~~crd~wr~~~~~g~~~~r~~Ws~eEe~~Llk~V~~~~~~~~  459 (607)
T KOG0051|consen  383 KRGKWTPEEEEELKKLVVEHGN-DWKEIGKALG--RMPMDCRDRWRQYVKCGSKRNRGAWSIEEEEKLLKTVNEMIREAL  459 (607)
T ss_pred             ccCCCCcchHHHHHHHHHHhcc-cHHHHHHHHc--cCcHHHHHHHHHhhccccccccCcchHHHHHHHHHHHHHHHHHhh
Confidence            8999999999999999999997 9999999998  99999999999999987  4899999999999999995       


Q ss_pred             hc-------------------CCChHHHHhhCCCCCHHHHHHHHHHHHHHHHHhcCC
Q 020603           93 KW-------------------GNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARHLKI  130 (324)
Q Consensus        93 ~~-------------------G~kWs~IA~~lpgRT~~qcknRW~~~lkk~~r~~~~  130 (324)
                      ++                   +-+|..|++.+..|+..|||-+|+.++.........
T Consensus       460 q~q~~n~~~~~q~sp~s~~~d~I~Wt~vse~~~TR~~~qCr~Kw~kl~~~~s~n~~~  516 (607)
T KOG0051|consen  460 QPQASNTDTGLQESPESTLKDDINWTLVSEMLGTRSRIQCRYKWYKLTTSPSFNKRQ  516 (607)
T ss_pred             cccccccchhhhcCccccccCCcchhhhhHhhcCCCcchHHHHHHHHHhhHHhhccc
Confidence            34                   125999999999999999999999988876544433

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=99.43  E-value=4.9e-14  Score=100.02  Aligned_cols=48  Identities=44%  Similarity=0.779  Sum_probs=43.4

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCChHHHHHHhCCCCCcccccceeeccc
Q 020603           23 RGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYL   70 (324)
Q Consensus        23 kg~WT~EED~~L~~lV~k~G~~~W~~IA~~l~~~Rt~~QCr~Rw~n~L   70 (324)
                      |++||+|||++|+++|.+||.++|..||..|+.+||..||+.||.++|
T Consensus         1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~~   48 (48)
T PF00249_consen    1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNLL   48 (48)
T ss_dssp             S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence            689999999999999999999679999999998899999999999875

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=99.42  E-value=2.9e-13  Score=96.01  Aligned_cols=46  Identities=35%  Similarity=0.700  Sum_probs=41.9

Q ss_pred             CCCCCHHHHHHHHHHHhhcCCC-hHHHHhhCC-CCCHHHHHHHHHHHH
Q 020603           76 RGNLTPQEQMSILELHSKWGNR-WSKIAQHLP-GRTDNEIKNYWRTRV  121 (324)
Q Consensus        76 kg~WT~EED~~Ll~lv~~~G~k-Ws~IA~~lp-gRT~~qcknRW~~~l  121 (324)
                      +++||+|||++|+++|.+||.+ |..||+.|+ |||..||++||+.++
T Consensus         1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~~   48 (48)
T PF00249_consen    1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNLL   48 (48)
T ss_dssp             S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence            5799999999999999999988 999999999 999999999999864

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>PLN03212 Transcription repressor MYB5; Provisional

Probab=99.33  E-value=2e-13  Score=127.00  Aligned_cols=70  Identities=21%  Similarity=0.311  Sum_probs=65.5

Q ss_pred             CCCccccccccccCCCCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhCCCCCcccccceeeccccCCC
Q 020603            3 SFSKSSTSSIYGENDSDQLRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDV   74 (324)
Q Consensus         3 ~~s~~~~~s~~~~~~~~~lkkg~WT~EED~~L~~lV~k~G~~~W~~IA~~l~~~Rt~~QCr~Rw~n~L~p~i   74 (324)
                      .|+..+|..+|.++.+|.+++++||+|||++|++++.+||. +|..||+.|+ |||..+|+.||..+|+..+
T Consensus        58 gRT~KQCReRW~N~L~P~I~kgpWT~EED~lLlel~~~~Gn-KWs~IAk~Lp-GRTDnqIKNRWns~LrK~l  127 (249)
T PLN03212         58 LRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRLHRLLGN-RWSLIAGRIP-GRTDNEIKNYWNTHLRKKL  127 (249)
T ss_pred             CCCcchHHHHHHHhhchhcccCCCChHHHHHHHHHHHhccc-cHHHHHhhcC-CCCHHHHHHHHHHHHhHHH
Confidence            47889999999999999999999999999999999999997 8999999999 9999999999998876543

>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.32  E-value=9.2e-13  Score=122.68  Aligned_cols=85  Identities=12%  Similarity=0.302  Sum_probs=73.3

Q ss_pred             CCCcCCCCCHHHHHHHHHHHhhcC-CChHHHHhhCC-CCCHHHHHHHHHHHHHHHHHhcCCCCCChhH------------
Q 020603           72 PDVKRGNLTPQEQMSILELHSKWG-NRWSKIAQHLP-GRTDNEIKNYWRTRVQKQARHLKIDANSTTF------------  137 (324)
Q Consensus        72 p~ikkg~WT~EED~~Ll~lv~~~G-~kWs~IA~~lp-gRT~~qcknRW~~~lkk~~r~~~~~~~s~~~------------  137 (324)
                      +.+.+|+||+|||++|+++|++|| ++|..|++.++ +|++.+||.||.++|++.++++.++..+...            
T Consensus         5 ~~~~kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~GKSCRlRW~NyLrP~ikrg~fT~eEe~~Ii~lH~~~GNrW   84 (238)
T KOG0048|consen    5 PELVKGPWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRCGKSCRLRWTNYLRPDLKRGNFSDEEEDLIIKLHALLGNRW   84 (238)
T ss_pred             ccccCCCCChHHHHHHHHHHHHhCCCCcchhhhhcCCCccchHHHHHhhcccCCCccCCCCCHHHHHHHHHHHHHHCcHH
Confidence            345579999999999999999999 56999999998 9999999999999999999999998766432            


Q ss_pred             -----------HHHHhhhccchhhhhccCC
Q 020603          138 -----------QEIIRCFWMPRLLQKMDTS  156 (324)
Q Consensus       138 -----------~~iir~~~~p~l~~k~~~~  156 (324)
                                 .+.|+++|..++++++..-
T Consensus        85 s~IA~~LPGRTDNeIKN~Wnt~lkkkl~~~  114 (238)
T KOG0048|consen   85 SLIAGRLPGRTDNEVKNHWNTHLKKKLLKM  114 (238)
T ss_pred             HHHHhhCCCcCHHHHHHHHHHHHHHHHHHc
Confidence                       5678899988887777543

>PLN03091 hypothetical protein; Provisional

Probab=99.30  E-value=5.4e-13  Score=132.50  Aligned_cols=69  Identities=22%  Similarity=0.341  Sum_probs=64.8

Q ss_pred             CCCccccccccccCCCCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhCCCCCcccccceeeccccCC
Q 020603            3 SFSKSSTSSIYGENDSDQLRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPD   73 (324)
Q Consensus         3 ~~s~~~~~s~~~~~~~~~lkkg~WT~EED~~L~~lV~k~G~~~W~~IA~~l~~~Rt~~QCr~Rw~n~L~p~   73 (324)
                      .|+..+|..+|.++++|.++||+||+|||++|++++++||. +|.+||+.|+ ||++.+|+.||...|+..
T Consensus        47 gRT~KQCRERW~NyLdP~IkKgpWT~EED~lLLeL~k~~Gn-KWskIAk~LP-GRTDnqIKNRWnslLKKk  115 (459)
T PLN03091         47 QRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIELHAVLGN-RWSQIAAQLP-GRTDNEIKNLWNSCLKKK  115 (459)
T ss_pred             CcCcchHhHHHHhccCCcccCCCCCHHHHHHHHHHHHHhCc-chHHHHHhcC-CCCHHHHHHHHHHHHHHH
Confidence            47788999999999999999999999999999999999997 8999999999 999999999999877653

>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A

Probab=99.28  E-value=2.8e-12  Score=94.46  Aligned_cols=49  Identities=39%  Similarity=0.708  Sum_probs=41.2

Q ss_pred             CCHHHHHHHHHHHhhcCCChHHHHhhCCCCCHHHHHHHHHHHHHHHHHh
Q 020603           79 LTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARH  127 (324)
Q Consensus        79 WT~EED~~Ll~lv~~~G~kWs~IA~~lpgRT~~qcknRW~~~lkk~~r~  127 (324)
                      ||+|||++|+++|.+||++|..||+.|+.||..+|++||+..|++..++
T Consensus         1 WT~eEd~~L~~~~~~~g~~W~~Ia~~l~~Rt~~~~~~r~~~~l~~~~~~   49 (60)
T PF13921_consen    1 WTKEEDELLLELVKKYGNDWKKIAEHLGNRTPKQCRNRWRNHLRPKISR   49 (60)
T ss_dssp             S-HHHHHHHHHHHHHHTS-HHHHHHHSTTS-HHHHHHHHHHTTSTTSTS
T ss_pred             CCHHHHHHHHHHHHHHCcCHHHHHHHHCcCCHHHHHHHHHHHCcccccC
Confidence            9999999999999999999999999996699999999999977654333

...

>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Probab=99.22  E-value=1.8e-11  Score=84.25  Aligned_cols=47  Identities=38%  Similarity=0.803  Sum_probs=44.2

Q ss_pred             CCCCCHHHHHHHHHHHhhcC-CChHHHHhhCCCCCHHHHHHHHHHHHH
Q 020603           76 RGNLTPQEQMSILELHSKWG-NRWSKIAQHLPGRTDNEIKNYWRTRVQ  122 (324)
Q Consensus        76 kg~WT~EED~~Ll~lv~~~G-~kWs~IA~~lpgRT~~qcknRW~~~lk  122 (324)
                      +++||++||.+|+.++.+|| .+|..||..|++||..+|++||+.+++
T Consensus         1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~~rt~~~~~~~~~~~~~   48 (49)
T smart00717        1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWNNLLK   48 (49)
T ss_pred             CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence            46899999999999999999 999999999999999999999998764

>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Probab=99.11  E-value=5.2e-11  Score=81.93  Aligned_cols=48  Identities=44%  Similarity=0.837  Sum_probs=44.5

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCChHHHHHHhCCCCCcccccceeecccc
Q 020603           23 RGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLK   71 (324)
Q Consensus        23 kg~WT~EED~~L~~lV~k~G~~~W~~IA~~l~~~Rt~~QCr~Rw~n~L~   71 (324)
                      ++.||++||++|+.++..||..+|..||+.|+ +|+..+|+.||.+++.
T Consensus         1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~-~rt~~~~~~~~~~~~~   48 (49)
T smart00717        1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELP-GRTAEQCRERWNNLLK   48 (49)
T ss_pred             CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcC-CCCHHHHHHHHHHHcC
Confidence            57899999999999999999559999999999 9999999999988764

>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

Probab=99.10  E-value=1.7e-10  Score=78.31  Aligned_cols=43  Identities=42%  Similarity=0.766  Sum_probs=41.3

Q ss_pred             CCCHHHHHHHHHHHhhcC-CChHHHHhhCCCCCHHHHHHHHHHH
Q 020603           78 NLTPQEQMSILELHSKWG-NRWSKIAQHLPGRTDNEIKNYWRTR  120 (324)
Q Consensus        78 ~WT~EED~~Ll~lv~~~G-~kWs~IA~~lpgRT~~qcknRW~~~  120 (324)
                      +||++||.+|+.++.+|| .+|..||+.|++||..+|++||..+
T Consensus         1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~~rs~~~~~~~~~~~   44 (45)
T cd00167           1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNL   44 (45)
T ss_pred             CCCHHHHHHHHHHHHHHCcCCHHHHHhHcCCCCHHHHHHHHHHh
Confidence            599999999999999999 9999999999999999999999875

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.

>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

Probab=98.97  E-value=3.4e-10  Score=76.78  Aligned_cols=45  Identities=44%  Similarity=0.840  Sum_probs=41.7

Q ss_pred             CCCHHHHHHHHHHHHHhCCCChHHHHHHhCCCCCcccccceeeccc
Q 020603           25 PWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYL   70 (324)
Q Consensus        25 ~WT~EED~~L~~lV~k~G~~~W~~IA~~l~~~Rt~~QCr~Rw~n~L   70 (324)
                      +||++||++|++++.++|..+|..||+.++ +|+..+|+.||.+++
T Consensus         1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~-~rs~~~~~~~~~~~~   45 (45)
T cd00167           1 PWTEEEDELLLEAVKKYGKNNWEKIAKELP-GRTPKQCRERWRNLL   45 (45)
T ss_pred             CCCHHHHHHHHHHHHHHCcCCHHHHHhHcC-CCCHHHHHHHHHHhC
Confidence            599999999999999999669999999999 899999999997653

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.

>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]

Probab=98.89  E-value=2.6e-09  Score=110.16  Aligned_cols=106  Identities=27%  Similarity=0.405  Sum_probs=88.4

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCC-----------------------CChHHHHHHhCCCCCcccccceeeccccCC-
Q 020603           18 SDQLRRGPWTLEEDTLLIQYISRHSE-----------------------GRWNLLAKRSGLKRTGKSCRLRWLNYLKPD-   73 (324)
Q Consensus        18 ~~~lkkg~WT~EED~~L~~lV~k~G~-----------------------~~W~~IA~~l~~~Rt~~QCr~Rw~n~L~p~-   73 (324)
                      ...++-+.|+.+||+.|-+.|..|-.                       +-|+.|.+.|| -|+.+.++.+-++...+- 
T Consensus       303 ~~e~~~~~F~~eed~ale~~V~~y~~~eg~s~~q~~~~i~s~~~~~~~~~l~n~~~~~Lp-~R~~~siy~~~rR~y~~FE  381 (607)
T KOG0051|consen  303 EDEINLKKFSKEEDAALENFVNEYLANEGWSSEQFCQRIWSKDWKTIIRNLYNNLYKLLP-YRDRKSIYHHLRRAYTPFE  381 (607)
T ss_pred             hhhhhhhhccHHHHHHHHHHHHHHHHhhCcchhhhhhheeccCcchHHHHHHHhhhhhcC-cccchhHHHHHHhcCCccc
Confidence            34567799999999999999987721                       13788888999 599998877333333332 


Q ss_pred             CcCCCCCHHHHHHHHHHHhhcCCChHHHHhhCCCCCHHHHHHHHHHHHHHHH
Q 020603           74 VKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQA  125 (324)
Q Consensus        74 ikkg~WT~EED~~Ll~lv~~~G~kWs~IA~~lpgRT~~qcknRW~~~lkk~~  125 (324)
                      .++|.||+||++.|..+|.++|+.|..|++.| ||.+..|+.||+.+++..-
T Consensus       382 ~~rg~wt~ee~eeL~~l~~~~g~~W~~Ig~~l-gr~P~~crd~wr~~~~~g~  432 (607)
T KOG0051|consen  382 NKRGKWTPEEEEELKKLVVEHGNDWKEIGKAL-GRMPMDCRDRWRQYVKCGS  432 (607)
T ss_pred             cccCCCCcchHHHHHHHHHHhcccHHHHHHHH-ccCcHHHHHHHHHhhcccc
Confidence            28999999999999999999999999999999 9999999999999988764

>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

Probab=98.50  E-value=5.2e-08  Score=99.59  Aligned_cols=113  Identities=16%  Similarity=0.236  Sum_probs=97.9

Q ss_pred             CccccccccccCCCCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhCCCCCcccccceeeccccCCCcCCCCCHHHH
Q 020603            5 SKSSTSSIYGENDSDQLRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQ   84 (324)
Q Consensus         5 s~~~~~s~~~~~~~~~lkkg~WT~EED~~L~~lV~k~G~~~W~~IA~~l~~~Rt~~QCr~Rw~n~L~p~ikkg~WT~EED   84 (324)
                      .+.+|..+|.++.+|.++++.|+.|||+.|+.+-..+|. .|..||..++ +|+..+|.+||.+.+.+... ..|+..++
T Consensus        54 ~~kq~~~rw~~~lnp~lk~~~~~~eed~~li~l~~~~~~-~wstia~~~d-~rt~~~~~ery~~~~~~~~s-~~~s~~~~  130 (512)
T COG5147          54 TGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELGT-QWSTIADYKD-RRTAQQCVERYVNTLEDLSS-THDSKLQR  130 (512)
T ss_pred             ccccccchhhhhhchhcccccccHHHHHHHHHHHHhcCc-hhhhhccccC-ccchHHHHHHHHHHhhhhhc-cccccccc
Confidence            466899999999999999999999999999999999998 7999999999 99999999999999987655 78888888


Q ss_pred             HHHHHHHhhcCCChHHHHhhCCCCCHHHHHHHHHHH
Q 020603           85 MSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTR  120 (324)
Q Consensus        85 ~~Ll~lv~~~G~kWs~IA~~lpgRT~~qcknRW~~~  120 (324)
                      ...+..+..|+..|..+....-.+-...|.+++..+
T Consensus       131 ~~~f~k~d~f~~~~~~~~~~~~~~~~~~~~N~~~~~  166 (512)
T COG5147         131 RNEFDKIDPFNENSARRPDIYEDELLEREVNREASY  166 (512)
T ss_pred             hhhccccCchhhhhhhhhhhhhcccchhhhhHHHHH
Confidence            888888888888888877766666666666666543

>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

Probab=98.03  E-value=2.3e-07  Score=93.98  Aligned_cols=66  Identities=23%  Similarity=0.414  Sum_probs=61.3

Q ss_pred             CCccccccccccCCCCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhCCCCCcccccceeeccccC
Q 020603            4 FSKSSTSSIYGENDSDQLRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKP   72 (324)
Q Consensus         4 ~s~~~~~s~~~~~~~~~lkkg~WT~EED~~L~~lV~k~G~~~W~~IA~~l~~~Rt~~QCr~Rw~n~L~p   72 (324)
                      -++++|..+|.+..+|.+++--|+.|||++|+.+...... .|..||..|+  |++.||.+||.+.|..
T Consensus        40 kt~rqC~~rw~e~ldp~i~~tews~eederlLhlakl~p~-qwrtIa~i~g--r~~~qc~eRy~~ll~~  105 (617)
T KOG0050|consen   40 KTARQCKARWEEWLDPAIKKTEWSREEDERLLHLAKLEPT-QWRTIADIMG--RTSQQCLERYNNLLDV  105 (617)
T ss_pred             cchhHHHHHHHHHhCHHHhhhhhhhhHHHHHHHHHHhcCC-ccchHHHHhh--hhHHHHHHHHHHHHHH
Confidence            3678999999999999999999999999999999999987 8999999997  9999999999988753

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=97.94  E-value=7.1e-06  Score=60.86  Aligned_cols=49  Identities=14%  Similarity=0.220  Sum_probs=43.5

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCh---HHHHHHhCCCC-Ccccccceeeccc
Q 020603           22 RRGPWTLEEDTLLIQYISRHSEGRW---NLLAKRSGLKR-TGKSCRLRWLNYL   70 (324)
Q Consensus        22 kkg~WT~EED~~L~~lV~k~G~~~W---~~IA~~l~~~R-t~~QCr~Rw~n~L   70 (324)
                      .+-.||+||..+++++|+.+|.++|   ..|++.|...| |..||+.|++.|.
T Consensus         2 ~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~   54 (57)
T TIGR01557         2 PRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYR   54 (57)
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence            4668999999999999999998899   99999997566 9999999887764

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=97.79  E-value=1.7e-05  Score=79.22  Aligned_cols=65  Identities=25%  Similarity=0.441  Sum_probs=53.3

Q ss_pred             ccccccccccCC--CCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhCCCCCcccccceeecccc
Q 020603            6 KSSTSSIYGEND--SDQLRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLK   71 (324)
Q Consensus         6 ~~~~~s~~~~~~--~~~lkkg~WT~EED~~L~~lV~k~G~~~W~~IA~~l~~~Rt~~QCr~Rw~n~L~   71 (324)
                      +..+.-.|+-.+  .-.+-..-||.+|+-+|++++..||.|||..||+.+| .|++.+|+++|.+++-
T Consensus        53 ~H~~~H~Yrim~~~s~~i~~~~WtadEEilLLea~~t~G~GNW~dIA~hIG-tKtkeeck~hy~k~fv  119 (438)
T KOG0457|consen   53 KHQNDHPYRIMDTNSFPILDPSWTADEEILLLEAAETYGFGNWQDIADHIG-TKTKEECKEHYLKHFV  119 (438)
T ss_pred             CCCCCCCceeecCCCCCCCCCCCChHHHHHHHHHHHHhCCCcHHHHHHHHc-ccchHHHHHHHHHHHh
Confidence            334444444433  3466778999999999999999999999999999999 9999999999998653

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=97.76  E-value=7.2e-05  Score=55.48  Aligned_cols=47  Identities=17%  Similarity=0.230  Sum_probs=41.1

Q ss_pred             CCCCCHHHHHHHHHHHhhcCC-Ch---HHHHhhCC-CC-CHHHHHHHHHHHHH
Q 020603           76 RGNLTPQEQMSILELHSKWGN-RW---SKIAQHLP-GR-TDNEIKNYWRTRVQ  122 (324)
Q Consensus        76 kg~WT~EED~~Ll~lv~~~G~-kW---s~IA~~lp-gR-T~~qcknRW~~~lk  122 (324)
                      +-.||+||..+++++++.+|. +|   ..|++.|. .| |..||+.+.+.+..
T Consensus         3 r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~~   55 (57)
T TIGR01557         3 RVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRL   55 (57)
T ss_pred             CCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence            457999999999999999996 99   99999884 45 99999999987653

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=97.67  E-value=8.1e-05  Score=74.53  Aligned_cols=49  Identities=24%  Similarity=0.478  Sum_probs=44.2

Q ss_pred             CCcCCCCCHHHHHHHHHHHhhcC-CChHHHHhhCCCCCHHHHHHHHHHHH
Q 020603           73 DVKRGNLTPQEQMSILELHSKWG-NRWSKIAQHLPGRTDNEIKNYWRTRV  121 (324)
Q Consensus        73 ~ikkg~WT~EED~~Ll~lv~~~G-~kWs~IA~~lpgRT~~qcknRW~~~l  121 (324)
                      .+-...||.+|+.+|++++..|| |+|..||.++..|+..+|+.+|.+++
T Consensus        69 ~i~~~~WtadEEilLLea~~t~G~GNW~dIA~hIGtKtkeeck~hy~k~f  118 (438)
T KOG0457|consen   69 PILDPSWTADEEILLLEAAETYGFGNWQDIADHIGTKTKEECKEHYLKHF  118 (438)
T ss_pred             CCCCCCCChHHHHHHHHHHHHhCCCcHHHHHHHHcccchHHHHHHHHHHH
Confidence            34456799999999999999999 99999999999999999999998654

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=97.50  E-value=0.00013  Score=64.46  Aligned_cols=51  Identities=20%  Similarity=0.293  Sum_probs=44.7

Q ss_pred             cCCCCCHHHHHHHHHHHhhcC---C----ChHHHHhhCCCCCHHHHHHHHHHHHHHHHH
Q 020603           75 KRGNLTPQEQMSILELHSKWG---N----RWSKIAQHLPGRTDNEIKNYWRTRVQKQAR  126 (324)
Q Consensus        75 kkg~WT~EED~~Ll~lv~~~G---~----kWs~IA~~lpgRT~~qcknRW~~~lkk~~r  126 (324)
                      +...||.|||.+|.+.|.+|=   +    -+.++++.| +||+.+|.-||+..+|+...
T Consensus         3 RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L-~RTsAACGFRWNs~VRkqY~   60 (161)
T TIGR02894         3 RQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRAL-NRTAAACGFRWNAYVRKQYE   60 (161)
T ss_pred             cccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH-cccHHHhcchHHHHHHHHHH
Confidence            567899999999999998874   2    299999999 99999999999999998644

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>PF13325 MCRS_N: N-terminal region of micro-spherule protein

Probab=97.31  E-value=0.00063  Score=62.34  Aligned_cols=97  Identities=20%  Similarity=0.344  Sum_probs=72.9

Q ss_pred             CCCHHHHHHHHHHHHHhCCCChHHHHHHhCCC--CCcccccceeecccc-CCC--------------------cCCCCCH
Q 020603           25 PWTLEEDTLLIQYISRHSEGRWNLLAKRSGLK--RTGKSCRLRWLNYLK-PDV--------------------KRGNLTP   81 (324)
Q Consensus        25 ~WT~EED~~L~~lV~k~G~~~W~~IA~~l~~~--Rt~~QCr~Rw~n~L~-p~i--------------------kkg~WT~   81 (324)
                      +|++++|-+|+.+|..-.  +-..|++.+.+.  -|-..+.+||...|- |.+                    .+-+||.
T Consensus         1 rW~~~DDl~Li~av~~~~--~L~~v~~gvkFS~~fT~~Ei~~RW~~llyd~~is~~a~~~m~~l~p~~~~~iq~kalfS~   78 (199)
T PF13325_consen    1 RWKPEDDLLLINAVEQTN--DLESVHLGVKFSCKFTLQEIEERWYALLYDPVISRIAVAAMRNLHPELIAAIQSKALFSK   78 (199)
T ss_pred             CCCchhhHHHHHHHHHhc--CHHHHHccCCcCCcCcHHHHHHHHHHHHcChhhHHHHHHHHHhCCcchhhcccccCCCCH
Confidence            699999999999998876  578888766543  355667789988763 322                    3467999


Q ss_pred             HHHHHHHHHHhhcCC---ChHHHHh----hC-CCCCHHHHHHHHHHHHHH
Q 020603           82 QEQMSILELHSKWGN---RWSKIAQ----HL-PGRTDNEIKNYWRTRVQK  123 (324)
Q Consensus        82 EED~~Ll~lv~~~G~---kWs~IA~----~l-pgRT~~qcknRW~~~lkk  123 (324)
                      +|+++|.........   .+.+|=.    .| ++||+.++.++|+.+.+.
T Consensus        79 ~EE~lL~~v~s~~~p~le~Fq~LL~~n~~vFh~sRTak~L~~HW~lmkqy  128 (199)
T PF13325_consen   79 EEEQLLGTVASSSQPSLETFQELLDKNRSVFHPSRTAKSLQDHWRLMKQY  128 (199)
T ss_pred             HHHHHHHhhhhccCCcHHHHHHHHHhChhhhccccCHHHHHHHHHHHHHh
Confidence            999999998766543   4777733    23 789999999999965444

>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]

Probab=97.30  E-value=0.00014  Score=73.52  Aligned_cols=46  Identities=28%  Similarity=0.598  Sum_probs=43.2

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhCCCCCcccccceeecc
Q 020603           22 RRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNY   69 (324)
Q Consensus        22 kkg~WT~EED~~L~~lV~k~G~~~W~~IA~~l~~~Rt~~QCr~Rw~n~   69 (324)
                      +...||.+|..+|++.|+.||. +|.+||++++ +|+..||..||.++
T Consensus       278 ~dk~WS~qE~~LLLEGIe~ygD-dW~kVA~HVg-tKt~EqCIl~FL~L  323 (531)
T COG5259         278 RDKNWSRQELLLLLEGIEMYGD-DWDKVARHVG-TKTKEQCILHFLQL  323 (531)
T ss_pred             ccccccHHHHHHHHHHHHHhhh-hHHHHHHHhC-CCCHHHHHHHHHcC
Confidence            6679999999999999999997 9999999999 99999999999774

>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]

Probab=97.09  E-value=0.00029  Score=72.59  Aligned_cols=49  Identities=29%  Similarity=0.598  Sum_probs=44.5

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhCCCCCcccccceeecc
Q 020603           19 DQLRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNY   69 (324)
Q Consensus        19 ~~lkkg~WT~EED~~L~~lV~k~G~~~W~~IA~~l~~~Rt~~QCr~Rw~n~   69 (324)
                      ..-.++.||.+|+.+|+++|+.||. +|.+||.+++ .|+..||..|+.+.
T Consensus       249 ~~~~~~~WT~qE~lLLLE~ie~y~d-dW~kVa~hVg-~ks~eqCI~kFL~L  297 (506)
T KOG1279|consen  249 GESARPNWTEQETLLLLEAIEMYGD-DWNKVADHVG-TKSQEQCILKFLRL  297 (506)
T ss_pred             cccCCCCccHHHHHHHHHHHHHhcc-cHHHHHhccC-CCCHHHHHHHHHhc
Confidence            3446789999999999999999997 9999999999 99999999998764

>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A

Probab=97.02  E-value=0.00056  Score=53.48  Aligned_cols=50  Identities=28%  Similarity=0.524  Sum_probs=35.5

Q ss_pred             CCCCHHHHHHHHHHHhh------cC--C------ChHHHHhhC----CCCCHHHHHHHHHHHHHHHHHh
Q 020603           77 GNLTPQEQMSILELHSK------WG--N------RWSKIAQHL----PGRTDNEIKNYWRTRVQKQARH  127 (324)
Q Consensus        77 g~WT~EED~~Ll~lv~~------~G--~------kWs~IA~~l----pgRT~~qcknRW~~~lkk~~r~  127 (324)
                      ..||.+|...||+++.+      ++  +      -|..||..|    ..||+.||++||.++.+. .++
T Consensus         2 ~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~~~-Yk~   69 (90)
T PF13837_consen    2 RNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLKKK-YKK   69 (90)
T ss_dssp             -SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHHHH-HHC
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH-HHH
Confidence            47999999999999877      21  1      299999987    369999999999995554 443

>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]

Probab=96.98  E-value=0.00094  Score=68.87  Aligned_cols=46  Identities=26%  Similarity=0.446  Sum_probs=42.9

Q ss_pred             cCCCCCHHHHHHHHHHHhhcCCChHHHHhhCCCCCHHHHHHHHHHH
Q 020603           75 KRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTR  120 (324)
Q Consensus        75 kkg~WT~EED~~Ll~lv~~~G~kWs~IA~~lpgRT~~qcknRW~~~  120 (324)
                      -++.||++|..+|++++..||.+|.+||.++.+||..||-.||..+
T Consensus       252 ~~~~WT~qE~lLLLE~ie~y~ddW~kVa~hVg~ks~eqCI~kFL~L  297 (506)
T KOG1279|consen  252 ARPNWTEQETLLLLEAIEMYGDDWNKVADHVGTKSQEQCILKFLRL  297 (506)
T ss_pred             CCCCccHHHHHHHHHHHHHhcccHHHHHhccCCCCHHHHHHHHHhc
Confidence            4568999999999999999999999999999999999999999764

>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]

Probab=96.93  E-value=0.00096  Score=67.58  Aligned_cols=45  Identities=24%  Similarity=0.386  Sum_probs=42.3

Q ss_pred             CCCCCHHHHHHHHHHHhhcCCChHHHHhhCCCCCHHHHHHHHHHH
Q 020603           76 RGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTR  120 (324)
Q Consensus        76 kg~WT~EED~~Ll~lv~~~G~kWs~IA~~lpgRT~~qcknRW~~~  120 (324)
                      ...||.+|..+|++.++.||..|.+||+++..||..||--||.++
T Consensus       279 dk~WS~qE~~LLLEGIe~ygDdW~kVA~HVgtKt~EqCIl~FL~L  323 (531)
T COG5259         279 DKNWSRQELLLLLEGIEMYGDDWDKVARHVGTKTKEQCILHFLQL  323 (531)
T ss_pred             cccccHHHHHHHHHHHHHhhhhHHHHHHHhCCCCHHHHHHHHHcC
Confidence            348999999999999999999999999999999999999999863

>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif

Probab=96.86  E-value=0.0015  Score=49.65  Aligned_cols=51  Identities=14%  Similarity=0.356  Sum_probs=32.7

Q ss_pred             CCCCCHHHHHHHHHHHhhcC-------CC--hHHHHhhCC-CCCHHHHHHHHHHHHHHHHH
Q 020603           76 RGNLTPQEQMSILELHSKWG-------NR--WSKIAQHLP-GRTDNEIKNYWRTRVQKQAR  126 (324)
Q Consensus        76 kg~WT~EED~~Ll~lv~~~G-------~k--Ws~IA~~lp-gRT~~qcknRW~~~lkk~~r  126 (324)
                      +.+||.|||.+|++.|.++.       ++  |.++++.-+ .+|-...|+||...|+.+.+
T Consensus         2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~~~~~   62 (65)
T PF08914_consen    2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLRGRPR   62 (65)
T ss_dssp             -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT-----
T ss_pred             CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccc
Confidence            45899999999999996542       22  999999877 99999999999988877543

The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.

>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A

Probab=96.85  E-value=0.00049  Score=53.82  Aligned_cols=48  Identities=35%  Similarity=0.677  Sum_probs=33.1

Q ss_pred             CCCCCHHHHHHHHHHHHHh------C---C--C--ChHHHHHHh---CCCCCcccccceeeccc
Q 020603           23 RGPWTLEEDTLLIQYISRH------S---E--G--RWNLLAKRS---GLKRTGKSCRLRWLNYL   70 (324)
Q Consensus        23 kg~WT~EED~~L~~lV~k~------G---~--~--~W~~IA~~l---~~~Rt~~QCr~Rw~n~L   70 (324)
                      |..||.+|...|++++...      +   .  .  -|..||..|   |..|++.||+.||.++.
T Consensus         1 R~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~   64 (90)
T PF13837_consen    1 RRNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLK   64 (90)
T ss_dssp             --SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            4589999999999998871      1   1  1  499999887   66899999999998853

>PRK13923 putative spore coat protein regulator protein YlbO; Provisional

Probab=96.70  E-value=0.0021  Score=57.60  Aligned_cols=51  Identities=18%  Similarity=0.248  Sum_probs=43.8

Q ss_pred             CcCCCCCHHHHHHHHHHHhhcCCC-------hHHHHhhCCCCCHHHHHHHHHHHHHHHH
Q 020603           74 VKRGNLTPQEQMSILELHSKWGNR-------WSKIAQHLPGRTDNEIKNYWRTRVQKQA  125 (324)
Q Consensus        74 ikkg~WT~EED~~Ll~lv~~~G~k-------Ws~IA~~lpgRT~~qcknRW~~~lkk~~  125 (324)
                      .+...||.|||.+|-+.|..|+..       ...++..| +||..+|..||+..++++.
T Consensus         3 ~rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L-~rt~aac~fRwNs~vrk~Y   60 (170)
T PRK13923          3 TRQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDAL-KRTAAACGFRWNSVVRKQY   60 (170)
T ss_pred             chhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHH-hhhHHHHHhHHHHHHHHHH
Confidence            356789999999999999888742       77778888 9999999999999999754

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=96.55  E-value=0.0012  Score=58.53  Aligned_cols=50  Identities=34%  Similarity=0.711  Sum_probs=43.5

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCC-C-----ChHHHHHHhCCCCCcccccceeeccccC
Q 020603           21 LRRGPWTLEEDTLLIQYISRHSE-G-----RWNLLAKRSGLKRTGKSCRLRWLNYLKP   72 (324)
Q Consensus        21 lkkg~WT~EED~~L~~lV~k~G~-~-----~W~~IA~~l~~~Rt~~QCr~Rw~n~L~p   72 (324)
                      .+...||.|||.+|.+.|.+|-. |     .+.+|++.++  ||+..|.-||..+++.
T Consensus         2 ~RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L~--RTsAACGFRWNs~VRk   57 (161)
T TIGR02894         2 TRQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRALN--RTAAACGFRWNAYVRK   57 (161)
T ss_pred             ccccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHc--ccHHHhcchHHHHHHH
Confidence            46788999999999999999843 1     5899999987  9999999999998874

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain

Probab=96.31  E-value=0.014  Score=44.77  Aligned_cols=49  Identities=29%  Similarity=0.519  Sum_probs=40.4

Q ss_pred             CCCCCHHHHHHHHHHHhhcC----C-------------ChHHHHhhC-----CCCCHHHHHHHHHHHHHHH
Q 020603           76 RGNLTPQEQMSILELHSKWG----N-------------RWSKIAQHL-----PGRTDNEIKNYWRTRVQKQ  124 (324)
Q Consensus        76 kg~WT~EED~~Ll~lv~~~G----~-------------kWs~IA~~l-----pgRT~~qcknRW~~~lkk~  124 (324)
                      +..||.+|.+.|++++.+|.    +             -|..|+..|     +.||..+||.+|..+....
T Consensus         2 ~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk~~~   72 (78)
T PF13873_consen    2 KPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLKSKA   72 (78)
T ss_pred             CCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHH
Confidence            45799999999999998873    1             299999976     3599999999999876553

>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif

Probab=96.29  E-value=0.0018  Score=49.34  Aligned_cols=51  Identities=31%  Similarity=0.578  Sum_probs=33.1

Q ss_pred             CCCCCHHHHHHHHHHHHHhCC------C--ChHHHHHHhCCCCCcccccceeeccccCC
Q 020603           23 RGPWTLEEDTLLIQYISRHSE------G--RWNLLAKRSGLKRTGKSCRLRWLNYLKPD   73 (324)
Q Consensus        23 kg~WT~EED~~L~~lV~k~G~------~--~W~~IA~~l~~~Rt~~QCr~Rw~n~L~p~   73 (324)
                      |.+||.|||+.|++.|..+..      |  =|.++++.-+..+|-.+-|+||.+.|.+.
T Consensus         2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~~~   60 (65)
T PF08914_consen    2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLRGR   60 (65)
T ss_dssp             -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT---
T ss_pred             CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcc
Confidence            568999999999999976531      2  39999988776788888999999988764

The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.

>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional

Probab=96.07  E-value=0.029  Score=62.68  Aligned_cols=103  Identities=14%  Similarity=0.218  Sum_probs=78.0

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCChHHHHHHhCCCCCcccccc-------eeecc---------------------------
Q 020603           24 GPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRL-------RWLNY---------------------------   69 (324)
Q Consensus        24 g~WT~EED~~L~~lV~k~G~~~W~~IA~~l~~~Rt~~QCr~-------Rw~n~---------------------------   69 (324)
                      ..|+..+=..++.+..+||..+-..||..|. +++...++.       ||..+                           
T Consensus       825 ~~w~~~~f~~f~~~~~~~gr~~~~~i~~~~~-~k~~~ev~~y~~~f~~~~~~~~~~~~~~~~ie~~e~~~~~~~~~~~~~  903 (1033)
T PLN03142        825 STWSRRDFNAFIRACEKYGRNDIKSIASEME-GKTEEEVERYAKVFWERYKELNDYDRIIKNIERGEARISRKDEIMKAI  903 (1033)
T ss_pred             CcccHHHHHHHHHHHHHhCHhHHHHHHHHhc-CCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3477777777888889999888999999997 777776652       22111                           


Q ss_pred             ---------------c-cCCCcCCCCCHHHHHHHHHHHhhcC-CChHHHHhh------------CCCCCHHHHHHHHHHH
Q 020603           70 ---------------L-KPDVKRGNLTPQEQMSILELHSKWG-NRWSKIAQH------------LPGRTDNEIKNYWRTR  120 (324)
Q Consensus        70 ---------------L-~p~ikkg~WT~EED~~Ll~lv~~~G-~kWs~IA~~------------lpgRT~~qcknRW~~~  120 (324)
                                     + -+..++..+|+|||..|+-++.+|| ++|.+|-..            |..||+..|..|...+
T Consensus       904 ~~k~~~~~~p~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~i~~~~~f~fd~~~~srt~~~~~~r~~~l  983 (1033)
T PLN03142        904 GKKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMLCMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTPQELARRCDTL  983 (1033)
T ss_pred             HHHHHHccCcHHHceeecCCCCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHhCCceeeehhhccCCHHHHHHHHHHH
Confidence                           0 0122345699999999999999999 789999543            2489999999999999


Q ss_pred             HHHHHHh
Q 020603          121 VQKQARH  127 (324)
Q Consensus       121 lkk~~r~  127 (324)
                      ++-..+.
T Consensus       984 ~~~~~~e  990 (1033)
T PLN03142        984 IRLIEKE  990 (1033)
T ss_pred             HHHHHHH
Confidence            8876544

>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=95.95  E-value=0.0084  Score=58.50  Aligned_cols=46  Identities=22%  Similarity=0.406  Sum_probs=42.4

Q ss_pred             CCCCHHHHHHHHHHHhhcC-CChHHHHhhCCCCCHHHHHHHHHHHHH
Q 020603           77 GNLTPQEQMSILELHSKWG-NRWSKIAQHLPGRTDNEIKNYWRTRVQ  122 (324)
Q Consensus        77 g~WT~EED~~Ll~lv~~~G-~kWs~IA~~lpgRT~~qcknRW~~~lk  122 (324)
                      ..|+.+|+.+|+++....| ++|..||.++..|+...||.+|..+..
T Consensus        64 e~WgadEEllli~~~~TlGlGNW~dIadyiGsr~kee~k~HylK~y~  110 (432)
T COG5114          64 EGWGADEELLLIECLDTLGLGNWEDIADYIGSRAKEEIKSHYLKMYD  110 (432)
T ss_pred             CCcCchHHHHHHHHHHhcCCCcHHHHHHHHhhhhhHHHHHHHHHHHh
Confidence            4699999999999999999 899999999988999999999986554

>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=95.92  E-value=0.0033  Score=61.28  Aligned_cols=51  Identities=22%  Similarity=0.477  Sum_probs=46.7

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhCCCCCcccccceeecccc
Q 020603           20 QLRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLK   71 (324)
Q Consensus        20 ~lkkg~WT~EED~~L~~lV~k~G~~~W~~IA~~l~~~Rt~~QCr~Rw~n~L~   71 (324)
                      .+----|+..|+-+|++.....|-|||..||..+| .|+...|+++|..++.
T Consensus        60 pI~~e~WgadEEllli~~~~TlGlGNW~dIadyiG-sr~kee~k~HylK~y~  110 (432)
T COG5114          60 PIGEEGWGADEELLLIECLDTLGLGNWEDIADYIG-SRAKEEIKSHYLKMYD  110 (432)
T ss_pred             cccCCCcCchHHHHHHHHHHhcCCCcHHHHHHHHh-hhhhHHHHHHHHHHHh
Confidence            45556799999999999999999999999999999 9999999999988765

>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain

Probab=95.82  E-value=0.0044  Score=47.62  Aligned_cols=49  Identities=24%  Similarity=0.510  Sum_probs=40.3

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCC----------------CChHHHHHHh----CCCCCcccccceeeccc
Q 020603           22 RRGPWTLEEDTLLIQYISRHSE----------------GRWNLLAKRS----GLKRTGKSCRLRWLNYL   70 (324)
Q Consensus        22 kkg~WT~EED~~L~~lV~k~G~----------------~~W~~IA~~l----~~~Rt~~QCr~Rw~n~L   70 (324)
                      ++..||.+|.+.|+++|++|..                ..|..|+..|    +..|+..||+.+|.++.
T Consensus         1 R~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk   69 (78)
T PF13873_consen    1 RKPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLK   69 (78)
T ss_pred             CCCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Confidence            4678999999999999998832                1499999887    22699999999998854

>PRK13923 putative spore coat protein regulator protein YlbO; Provisional

Probab=95.03  E-value=0.0081  Score=53.88  Aligned_cols=49  Identities=29%  Similarity=0.589  Sum_probs=40.8

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCC------ChHHHHHHhCCCCCcccccceeecccc
Q 020603           21 LRRGPWTLEEDTLLIQYISRHSEG------RWNLLAKRSGLKRTGKSCRLRWLNYLK   71 (324)
Q Consensus        21 lkkg~WT~EED~~L~~lV~k~G~~------~W~~IA~~l~~~Rt~~QCr~Rw~n~L~   71 (324)
                      .++..||.|||.+|.+.|.+|+..      ....++..|.  |+..+|..||..+++
T Consensus         3 ~rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L~--rt~aac~fRwNs~vr   57 (170)
T PRK13923          3 TRQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDALK--RTAAACGFRWNSVVR   57 (170)
T ss_pred             chhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHh--hhHHHHHhHHHHHHH
Confidence            577899999999999999988753      3677777776  999999999977665

>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices

Probab=92.90  E-value=0.19  Score=42.60  Aligned_cols=53  Identities=25%  Similarity=0.389  Sum_probs=41.9

Q ss_pred             CCcCCCCCHHHHHHHHHHHhhcCC----ChHHHHhhC------------CCCCHHHHHHHHHHHHHHHH
Q 020603           73 DVKRGNLTPQEQMSILELHSKWGN----RWSKIAQHL------------PGRTDNEIKNYWRTRVQKQA  125 (324)
Q Consensus        73 ~ikkg~WT~EED~~Ll~lv~~~G~----kWs~IA~~l------------pgRT~~qcknRW~~~lkk~~  125 (324)
                      ..++..||++||..|+-++.+||-    .|..|-..+            ..||+..|..|...+++-..
T Consensus        46 ~~~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~~i~  114 (118)
T PF09111_consen   46 NNKKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNTLIKLIE  114 (118)
T ss_dssp             TSS-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHHHHHHHH
T ss_pred             CCCCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHHHHHHHH
Confidence            446678999999999999999995    698887642            47999999999999887644

It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.

>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]

Probab=92.84  E-value=0.09  Score=52.62  Aligned_cols=55  Identities=16%  Similarity=0.241  Sum_probs=48.7

Q ss_pred             CCCCHHHHHHHHHHHhhcCCChHHHHhh-----CCC-CCHHHHHHHHHHHHHHHHHhcCCC
Q 020603           77 GNLTPQEQMSILELHSKWGNRWSKIAQH-----LPG-RTDNEIKNYWRTRVQKQARHLKID  131 (324)
Q Consensus        77 g~WT~EED~~Ll~lv~~~G~kWs~IA~~-----lpg-RT~~qcknRW~~~lkk~~r~~~~~  131 (324)
                      ..||.+|-+-|++|++.|.-+|-.|+..     ++. ||-..+|.||+...++.++...-.
T Consensus       131 n~WskeETD~LF~lck~fDLRf~VIaDRyd~qq~~~sRTvEdLKeRyY~v~r~l~kAr~~s  191 (445)
T KOG2656|consen  131 NSWSKEETDYLFDLCKRFDLRFFVIADRYDNQQYKKSRTVEDLKERYYSVCRKLLKARAPS  191 (445)
T ss_pred             ccccHHHHHHHHHHHHhcCeeEEEEeeccchhhccccccHHHHHHHHHHHHHHHHHccCCC
Confidence            5699999999999999999999999987     555 999999999999998887766544

>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]

Probab=92.69  E-value=0.24  Score=48.45  Aligned_cols=51  Identities=16%  Similarity=0.362  Sum_probs=40.6

Q ss_pred             CCCCCHHHHHHHHHHHhhc----------CCChHHHHhhC----CCCCHHHHHHHHHHHHHHHHH
Q 020603           76 RGNLTPQEQMSILELHSKW----------GNRWSKIAQHL----PGRTDNEIKNYWRTRVQKQAR  126 (324)
Q Consensus        76 kg~WT~EED~~Ll~lv~~~----------G~kWs~IA~~l----pgRT~~qcknRW~~~lkk~~r  126 (324)
                      ...|+.+|-..||++..+.          +.-|..||+.|    .-||+.|||++|.++.++..+
T Consensus        54 ~~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~k~Yk~  118 (345)
T KOG4282|consen   54 EPRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLKKKYKK  118 (345)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence            3689999999999998643          23499999965    349999999999997776443

>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains

Probab=92.63  E-value=0.32  Score=38.27  Aligned_cols=46  Identities=33%  Similarity=0.618  Sum_probs=35.0

Q ss_pred             CCCHHHHHHHHHHHhhc---CC----------ChHHHHhhC---CC--CCHHHHHHHHHHHHHH
Q 020603           78 NLTPQEQMSILELHSKW---GN----------RWSKIAQHL---PG--RTDNEIKNYWRTRVQK  123 (324)
Q Consensus        78 ~WT~EED~~Ll~lv~~~---G~----------kWs~IA~~l---pg--RT~~qcknRW~~~lkk  123 (324)
                      .||+++++.|++++.+.   |+          .|..|+..|   .|  .+..||++||..+.+.
T Consensus         1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk~~   64 (96)
T PF12776_consen    1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLKKD   64 (96)
T ss_pred             CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHH
Confidence            49999999999998543   21          299999877   23  5789999999875554

>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]

Probab=92.28  E-value=0.22  Score=49.87  Aligned_cols=46  Identities=22%  Similarity=0.346  Sum_probs=42.7

Q ss_pred             CCCCHHHHHHHHHHHhhcCCChHHHHhhCCCCCHHHHHHHHHHHHH
Q 020603           77 GNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQ  122 (324)
Q Consensus        77 g~WT~EED~~Ll~lv~~~G~kWs~IA~~lpgRT~~qcknRW~~~lk  122 (324)
                      .+|+.+|-++..++...+|..+..|+..+|.|...|||.+|.+--+
T Consensus       366 ~~Ws~~e~ekFYKALs~wGtdF~LIs~lfP~R~RkqIKaKfi~Eek  411 (507)
T COG5118         366 LRWSKKEIEKFYKALSIWGTDFSLISSLFPNRERKQIKAKFIKEEK  411 (507)
T ss_pred             CcccHHHHHHHHHHHHHhcchHHHHHHhcCchhHHHHHHHHHHHhh
Confidence            3699999999999999999999999999999999999999986444

>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription]

Probab=89.68  E-value=1.8  Score=44.40  Aligned_cols=48  Identities=19%  Similarity=0.323  Sum_probs=43.1

Q ss_pred             CCCCCHHHHHHHHHHHhhcCCChHHHHhhCCCCCHHHHHHHHHHHHHH
Q 020603           76 RGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQK  123 (324)
Q Consensus        76 kg~WT~EED~~Ll~lv~~~G~kWs~IA~~lpgRT~~qcknRW~~~lkk  123 (324)
                      ...||.||--++-+++..||.++.+|-+.||.|+-..+..+|....+.
T Consensus       187 ~d~WT~Ed~vlFe~aF~~~GK~F~kIrq~LP~rsLaSlvqyYy~~KK~  234 (534)
T KOG1194|consen  187 PDEWTAEDIVLFEQAFQFFGKDFHKIRQALPHRSLASLVQYYYSWKKT  234 (534)
T ss_pred             cccchHHHHHHHHHHHHHhcccHHHHHHHccCccHHHHHHHHHHHHHH
Confidence            457999999999999999999999999999999999999998765443

>PF08281 Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013249 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription

Probab=87.88  E-value=1.8  Score=30.49  Aligned_cols=42  Identities=29%  Similarity=0.408  Sum_probs=31.8

Q ss_pred             HHHHHHHHHHHhhcCCChHHHHhhCCCCCHHHHHHHHHHHHHH
Q 020603           81 PQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQK  123 (324)
Q Consensus        81 ~EED~~Ll~lv~~~G~kWs~IA~~lpgRT~~qcknRW~~~lkk  123 (324)
                      ++++..++.++...|-.|.+||+.+ |.+...|+.+....+++
T Consensus        12 ~~~~r~i~~l~~~~g~s~~eIa~~l-~~s~~~v~~~l~ra~~~   53 (54)
T PF08281_consen   12 PERQREIFLLRYFQGMSYAEIAEIL-GISESTVKRRLRRARKK   53 (54)
T ss_dssp             -HHHHHHHHHHHTS---HHHHHHHC-TS-HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCcCHHHHHHHH-CcCHHHHHHHHHHHHhh
Confidence            4677888889899999999999999 99999999988765543

Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2LFW_A 1OR7_B 2H27_D 2O8X_B.

>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]

Probab=87.81  E-value=0.33  Score=47.54  Aligned_cols=48  Identities=25%  Similarity=0.454  Sum_probs=37.9

Q ss_pred             CCCCCHHHHHHHHHHHHHh----CC-----CChHHHHHHh---CCCCCcccccceeeccc
Q 020603           23 RGPWTLEEDTLLIQYISRH----SE-----GRWNLLAKRS---GLKRTGKSCRLRWLNYL   70 (324)
Q Consensus        23 kg~WT~EED~~L~~lV~k~----G~-----~~W~~IA~~l---~~~Rt~~QCr~Rw~n~L   70 (324)
                      ...|+.+|-..|+++..+.    ..     .-|..||+.+   +..|++.||+.||.++.
T Consensus        54 ~~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~  113 (345)
T KOG4282|consen   54 EPRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLK  113 (345)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence            3789999999999987643    11     1499999854   56799999999998753

>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices

Probab=87.30  E-value=0.88  Score=38.55  Aligned_cols=35  Identities=17%  Similarity=0.398  Sum_probs=30.0

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCC---CChHHHHHHh
Q 020603           19 DQLRRGPWTLEEDTLLIQYISRHSE---GRWNLLAKRS   53 (324)
Q Consensus        19 ~~lkkg~WT~EED~~L~~lV~k~G~---~~W~~IA~~l   53 (324)
                      +..++..||.+||.-|+-.+.+||-   +.|..|...+
T Consensus        45 ~~~~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~I   82 (118)
T PF09111_consen   45 PNNKKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEI   82 (118)
T ss_dssp             STSS-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHH
T ss_pred             CCCCCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHH
Confidence            3677899999999999999999998   8999999876

It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.

>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]

Probab=86.99  E-value=1.4  Score=44.33  Aligned_cols=107  Identities=10%  Similarity=0.113  Sum_probs=66.4

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhCCCCCcccccceeeccc--cCC-----C-cCCCCCHHHHHHHHHH---
Q 020603           22 RRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYL--KPD-----V-KRGNLTPQEQMSILEL---   90 (324)
Q Consensus        22 kkg~WT~EED~~L~~lV~k~G~~~W~~IA~~l~~~Rt~~QCr~Rw~n~L--~p~-----i-kkg~WT~EED~~Ll~l---   90 (324)
                      ..-+|+.+|-+++.+++...|. ++..|+..+| .|..+|++.+|.+--  +|.     + .+.++..+|-.+|...   
T Consensus       364 ~~~~Ws~~e~ekFYKALs~wGt-dF~LIs~lfP-~R~RkqIKaKfi~Eek~nP~rIn~aL~~kkp~d~~eY~k~~~~~~e  441 (507)
T COG5118         364 GALRWSKKEIEKFYKALSIWGT-DFSLISSLFP-NRERKQIKAKFIKEEKVNPERINEALNEKKPFDQVEYNKLRSYLLE  441 (507)
T ss_pred             CCCcccHHHHHHHHHHHHHhcc-hHHHHHHhcC-chhHHHHHHHHHHHhhhCHHHHHHHHhccCCCCHHHHhhHHHHHHH
Confidence            4468999999999999999998 9999999999 999999999887632  221     1 2346666665443322   


Q ss_pred             -HhhcCCChHHHHhhC--CCCCHHHHHHHHHHHHHHHHHhcCC
Q 020603           91 -HSKWGNRWSKIAQHL--PGRTDNEIKNYWRTRVQKQARHLKI  130 (324)
Q Consensus        91 -v~~~G~kWs~IA~~l--pgRT~~qcknRW~~~lkk~~r~~~~  130 (324)
                       +.++.+.-..|-+.+  ..|++..+...-+.+....+.+.|-
T Consensus       442 ~l~Elq~E~k~~~~~~EE~k~~A~E~~q~~Q~l~~~~L~k~~~  484 (507)
T COG5118         442 KLIELQNEHKHHMKEIEEAKNTAKEEDQTAQRLNDANLNKKGS  484 (507)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhccCC
Confidence             222222233333333  2345544444444444444444433

>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]

Probab=86.18  E-value=2.8  Score=45.38  Aligned_cols=44  Identities=14%  Similarity=0.196  Sum_probs=41.1

Q ss_pred             CCCCHHHHHHHHHHHhhcCCChHHHHhhCCCCCHHHHHHHHHHH
Q 020603           77 GNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTR  120 (324)
Q Consensus        77 g~WT~EED~~Ll~lv~~~G~kWs~IA~~lpgRT~~qcknRW~~~  120 (324)
                      ..||+.|..++-+++..|.+++-.|++.++++|-.||-.+|+..
T Consensus       620 d~WTp~E~~lF~kA~y~~~KDF~~v~km~~~KtVaqCVeyYYtW  663 (907)
T KOG4167|consen  620 DKWTPLERKLFNKALYTYSKDFIFVQKMVKSKTVAQCVEYYYTW  663 (907)
T ss_pred             ccccHHHHHHHHHHHHHhcccHHHHHHHhccccHHHHHHHHHHH
Confidence            57999999999999999999999999999999999999987754

>PF11626 Rap1_C: TRF2-interacting telomeric protein/Rap1 - C terminal domain; InterPro: IPR021661 This family of proteins represents the C-terminal domain of the protein Rap-1, which plays a distinct role in silencing at the silent mating-type loci and telomeres []

Probab=85.46  E-value=1.2  Score=35.46  Aligned_cols=31  Identities=29%  Similarity=0.510  Sum_probs=19.1

Q ss_pred             CCCCCCCCCHHHHHHH--------HHHHHHhCCCChHHHHHH
Q 020603           19 DQLRRGPWTLEEDTLL--------IQYISRHSEGRWNLLAKR   52 (324)
Q Consensus        19 ~~lkkg~WT~EED~~L--------~~lV~k~G~~~W~~IA~~   52 (324)
                      |.-..|-||+|+|+.|        .+|+++||   +..|+.+
T Consensus        43 P~n~~GiWT~eDD~~L~~~~~~~~~~L~~khG---~~~i~~R   81 (87)
T PF11626_consen   43 PDNMPGIWTPEDDEMLRSGDKDDIERLIKKHG---EERIERR   81 (87)
T ss_dssp             -TT-TT---HHHHHHHTS--HHHHHHHHHHH----HHHHHHH
T ss_pred             CCCCCCCcCHHHHHHHHcCCHHHHHHHHHHhC---HHHHHHH
Confidence            5567899999999999        55777887   4666654

The Rap-1 C terminus adopts an all-helical fold. Rap1 carries out its function by recruiting the Sir3 and Sir4 proteins to chromatin via its C-terminal domain []. ; PDB: 3K6G_C 3CZ6_A 3OWT_A.

>KOG4329 consensus DNA-binding protein [General function prediction only]

Probab=82.71  E-value=27  Score=35.26  Aligned_cols=43  Identities=16%  Similarity=0.242  Sum_probs=39.2

Q ss_pred             CCCCHHHHHHHHHHHhhcCCChHHHHh-hCCCCCHHHHHHHHHH
Q 020603           77 GNLTPQEQMSILELHSKWGNRWSKIAQ-HLPGRTDNEIKNYWRT  119 (324)
Q Consensus        77 g~WT~EED~~Ll~lv~~~G~kWs~IA~-~lpgRT~~qcknRW~~  119 (324)
                      ..|+++|-+.+-+-++.||+++..|.+ +++.|+-..|-..|+.
T Consensus       278 ~~wsEeEcr~FEegl~~yGKDF~lIr~nkvrtRsvgElVeyYYl  321 (445)
T KOG4329|consen  278 SGWSEEECRNFEEGLELYGKDFHLIRANKVRTRSVGELVEYYYL  321 (445)
T ss_pred             ccCCHHHHHHHHHHHHHhcccHHHHHhcccccchHHHHHHHHHH
Confidence            469999999999999999999999966 7899999999998874

>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains

Probab=82.23  E-value=1.1  Score=35.20  Aligned_cols=44  Identities=25%  Similarity=0.520  Sum_probs=31.8

Q ss_pred             CCCHHHHHHHHHHHHHh---CCC---------ChHHHHHHhC----CCCCcccccceeec
Q 020603           25 PWTLEEDTLLIQYISRH---SEG---------RWNLLAKRSG----LKRTGKSCRLRWLN   68 (324)
Q Consensus        25 ~WT~EED~~L~~lV~k~---G~~---------~W~~IA~~l~----~~Rt~~QCr~Rw~n   68 (324)
                      .||+++++.|++++...   |..         .|..|++.|.    ...+..||+.||..
T Consensus         1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~   60 (96)
T PF12776_consen    1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKT   60 (96)
T ss_pred             CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHH
Confidence            59999999999988544   211         3999998773    23466788887754

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	324
1a5j_A	110	Chicken B-Myb Dna Binding Domain, Repeat 2 And Repe		4e-21
1gv2_A	105	Crystal Structure Of C-Myb R2r3 Length = 105		8e-21
1mse_C	105	Solution Structure Of A Specific Dna Complex Of The		1e-20
1h88_C	159	Crystal Structure Of Ternary Protein-Dna Complex1 L		1e-20
1h8a_C	128	Crystal Structure Of Ternary Protein-Dna Complex3 L		1e-20
3zqc_A	131	Structure Of The Trichomonas Vaginalis Myb3 Dna-Bin		2e-14
3osf_A	126	The Structure Of Protozoan Parasite Trichomonas Vag		2e-10
2k9n_A	107	Solution Nmr Structure Of The R2r3 Dna Binding Doma		2e-10
1mbj_A	53	Mouse C-Myb Dna-Binding Domain Repeat 3 Length = 53		4e-07
1idy_A	54	Structure Of Myb Transforming Protein, Nmr, Minimiz		5e-07
1gvd_A	52	Crystal Structure Of C-Myb R2 V103l Mutant Length =		1e-06
1mbg_A	53	Mouse C-Myb Dna-Binding Domain Repeat 2 Length = 53		2e-06
1gv5_A	52	Crystal Structure Of C-Myb R2 Length = 52		2e-06

>pdb|1A5J|A Chain A, Chicken B-Myb Dna Binding Domain, Repeat 2 And Repeat3, Nmr, 32 Structures Length = 110

Iteration: 1
 Score = 98.6 bits (244), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 48/106 (45%), Positives = 71/106 (66%), Gaps = 3/106 (2%)
Query: 21  LRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLK-RTGKSCRLRWLNYLKPDVKRGNL 79
           L +GPWT EED  +I+ + ++   +W L+AK   LK R GK CR RW N+L P+VK+ + 
Sbjct: 5   LVKGPWTKEEDQKVIELVKKYGTKQWTLIAKH--LKGRLGKQCRERWHNHLNPEVKKSSW 62
Query: 80  TPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQA 125
           T +E   I E H   GNRW++IA+ LPGRTDN +KN+W + ++++ 
Sbjct: 63  TEEEDRIIFEAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTIKRKV 108

>pdb|1GV2|A Chain A, Crystal Structure Of C-Myb R2r3 Length = 105

Iteration: 1
 Score = 97.8 bits (242), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 48/106 (45%), Positives = 74/106 (69%), Gaps = 3/106 (2%)
Query: 20  QLRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLK-RTGKSCRLRWLNYLKPDVKRGN 78
           +L +GPWT EED  +I+ + ++   RW+++AK   LK R GK CR RW N+L P+VK+ +
Sbjct: 1   ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKH--LKGRIGKQCRERWHNHLNPEVKKTS 58
Query: 79  LTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQ 124
            T +E   I + H + GNRW++IA+ LPGRTDN IKN+W + ++++
Sbjct: 59  WTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 104

>pdb|1MSE|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb Dna- Binding Domain With Cooperative Recognition Helices Length = 105

Iteration: 1
 Score = 97.4 bits (241), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 48/105 (45%), Positives = 73/105 (69%), Gaps = 3/105 (2%)
Query: 21  LRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLK-RTGKSCRLRWLNYLKPDVKRGNL 79
           L +GPWT EED  +I+ + ++   RW+++AK   LK R GK CR RW N+L P+VK+ + 
Sbjct: 2   LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKH--LKGRIGKQCRERWHNHLNPEVKKTSW 59
Query: 80  TPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQ 124
           T +E   I + H + GNRW++IA+ LPGRTDN IKN+W + ++++
Sbjct: 60  TEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 104

>pdb|1H88|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex1 Length = 159

Iteration: 1
 Score = 97.1 bits (240), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 48/107 (44%), Positives = 74/107 (69%), Gaps = 3/107 (2%)
Query: 20  QLRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLK-RTGKSCRLRWLNYLKPDVKRGN 78
           +L +GPWT EED  +I+ + ++   RW+++AK   LK R GK CR RW N+L P+VK+ +
Sbjct: 55  ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKH--LKGRIGKQCRERWHNHLNPEVKKTS 112
Query: 79  LTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQA 125
            T +E   I + H + GNRW++IA+ LPGRTDN IKN+W + ++++ 
Sbjct: 113 WTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 159

>pdb|1H8A|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex3 Length = 128

Iteration: 1
 Score = 97.1 bits (240), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 47/107 (43%), Positives = 74/107 (69%), Gaps = 3/107 (2%)
Query: 20  QLRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLK-RTGKSCRLRWLNYLKPDVKRGN 78
           +L +GPWT EED  +I+++ ++   RW+ +AK   LK R GK CR RW N+L P+VK+ +
Sbjct: 24  ELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKH--LKGRIGKQCRERWHNHLNPEVKKTS 81
Query: 79  LTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQA 125
            T +E   I + H + GNRW++IA+ LPGRTDN +KN+W + ++++ 
Sbjct: 82  WTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRKV 128

>pdb|3ZQC|A Chain A, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding Domain Bound To A Promoter Sequence Reveals A Unique C- Terminal Beta-Hairpin Conformation Length = 131

Iteration: 1
 Score = 76.6 bits (187), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 41/103 (39%), Positives = 61/103 (59%), Gaps = 3/103 (2%)
Query: 23  RGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLK-RTGKSCRLRWLNYLKPDVKRGNLTP 81
           +GP+T  ED L+ +Y+  +    W  +   S L  R+ K CR RW N+L P V +   TP
Sbjct: 2   KGPFTEAEDDLIREYVKENGPQNWPRIT--SFLPNRSPKQCRERWFNHLDPAVVKHAWTP 59
Query: 82  QEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQ 124
           +E  +I   + K G++WS IA+ +PGRTDN IKN W + + K+
Sbjct: 60  EEDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKR 102

>pdb|3OSF|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis Myb2 In Complex With Mre-2f-13 Dna Length = 126

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 55/98 (56%), Gaps = 2/98 (2%)
Query: 22  RRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTP 81
           ++  +T EED +L + +++H    W ++A  +   R  + CR RW NYL P +     T 
Sbjct: 10  KKQKFTPEEDEMLKRAVAQHGSD-WKMIAA-TFPNRNARQCRDRWKNYLAPSISHTPWTA 67
Query: 82  QEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRT 119
           +E   +++   ++G +W+ IA+  PGRTD  IKN W T
Sbjct: 68  EEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVT 105

>pdb|2K9N|A Chain A, Solution Nmr Structure Of The R2r3 Dna Binding Domain Of Myb1 Protein From Protozoan Parasite Trichomonas Vaginalis Length = 107

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 60/103 (58%), Gaps = 1/103 (0%)
Query: 27  TLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQMS 86
           T EED  L Q + R+    W  +++   + R  + CR RW NY+ P ++    +P+E M 
Sbjct: 5   TEEEDLKLQQLVMRYGAKDWIRISQ-LMITRNPRQCRERWNNYINPALRTDPWSPEEDML 63
Query: 87  ILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARHLK 129
           + + ++++G +W+KI++ L  R+DN I+N W    + +A+H K
Sbjct: 64  LDQKYAEYGPKWNKISKFLKNRSDNNIRNRWMMIARHRAKHQK 106

>pdb|1MBJ|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3 Length = 53

Iteration: 1
 Score = 52.0 bits (123), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 23/51 (45%), Positives = 37/51 (72%)
Query: 74  VKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQ 124
           VK+ + T +E   I + H + GNRW++IA+ LPGRTDN IKN+W + ++++
Sbjct: 1   VKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 51

>pdb|1IDY|A Chain A, Structure Of Myb Transforming Protein, Nmr, Minimized Average Structure Length = 54

Iteration: 1
 Score = 51.6 bits (122), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 22/52 (42%), Positives = 38/52 (73%)
Query: 73  DVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQ 124
           +VK+ + T +E   + + H + GNRW++IA+ LPGRTDN IKN+W + ++++
Sbjct: 2   EVKKTSWTEEEDRILYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 53

>pdb|1GVD|A Chain A, Crystal Structure Of C-Myb R2 V103l Mutant Length = 52

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/54 (48%), Positives = 36/54 (66%), Gaps = 3/54 (5%)
Query: 21 LRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLK-RTGKSCRLRWLNYLKPD 73
          L +GPWT EED  LI+ + ++   RW+++AK   LK R GK CR RW N+L P+
Sbjct: 1  LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKH--LKGRIGKQCRERWHNHLNPE 52

>pdb|1MBG|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2 Length = 53

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/54 (46%), Positives = 36/54 (66%), Gaps = 3/54 (5%)
Query: 21 LRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLK-RTGKSCRLRWLNYLKPD 73
          L +GPWT EED  +I+ + ++   RW+++AK   LK R GK CR RW N+L P+
Sbjct: 1  LIKGPWTKEEDQRVIELVQKYGPKRWSVIAKH--LKGRIGKQCRERWHNHLNPE 52

>pdb|1GV5|A Chain A, Crystal Structure Of C-Myb R2 Length = 52

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/54 (46%), Positives = 36/54 (66%), Gaps = 3/54 (5%)
Query: 21 LRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLK-RTGKSCRLRWLNYLKPD 73
          L +GPWT EED  +I+ + ++   RW+++AK   LK R GK CR RW N+L P+
Sbjct: 1  LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKH--LKGRIGKQCRERWHNHLNPE 52

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	324
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	5e-55
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	2e-54
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	4e-54
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	2e-52
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	3e-48
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	2e-29
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	3e-48
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	8e-23
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	4e-21
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	2e-04
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	7e-19
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	8e-05
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	2e-16
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	1e-15
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	3e-15
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	7e-15
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	8e-15
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	1e-10
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	2e-04
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	2e-09
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	4e-04
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	1e-08
1w0u_A	55	Telomeric repeat binding factor 2; telomere, DNA-b	2e-08
1w0u_A	55	Telomeric repeat binding factor 2; telomere, DNA-b	8e-05
1vf9_A	64	Telomeric repeat binding factor 2; MYB, helix-turn	5e-08
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	6e-07
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	7e-04
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	1e-06
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	4e-06
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	3e-05
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	8e-05
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	2e-04
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	3e-04
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	2e-04
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	3e-04
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	6e-04

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Length = 105

 Score =  173 bits (442), Expect = 5e-55
 Identities = 46/105 (43%), Positives = 72/105 (68%), Gaps = 1/105 (0%)

Query: 20  QLRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNL 79
           +L +GPWT EED  +I+ + ++   RW+++AK     R GK CR RW N+L P+VK+ + 
Sbjct: 1   ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKTSW 59

Query: 80  TPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQ 124
           T +E   I + H + GNRW++IA+ LPGRTDN IKN+W + ++++
Sbjct: 60  TEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 104

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Length = 131

 Score =  173 bits (440), Expect = 2e-54
 Identities = 41/131 (31%), Positives = 65/131 (49%), Gaps = 3/131 (2%)

Query: 23  RGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQ 82
           +GP+T  ED L+ +Y+  +    W  +       R+ K CR RW N+L P V +   TP+
Sbjct: 2   KGPFTEAEDDLIREYVKENGPQNWPRITSFLPN-RSPKQCRERWFNHLDPAVVKHAWTPE 60

Query: 83  EQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARHLKIDANSTTFQEIIR 142
           E  +I   + K G++WS IA+ +PGRTDN IKN W + + K+                 +
Sbjct: 61  EDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKRISTNSNHKEILLPDRSKK 120

Query: 143 CFW--MPRLLQ 151
                +P+ L+
Sbjct: 121 RKAADVPKKLE 131

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Length = 128

 Score =  172 bits (438), Expect = 4e-54
 Identities = 45/104 (43%), Positives = 71/104 (68%), Gaps = 1/104 (0%)

Query: 21  LRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLT 80
           L +GPWT EED  +I+++ ++   RW+ +AK     R GK CR RW N+L P+VK+ + T
Sbjct: 25  LNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWT 83

Query: 81  PQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQ 124
            +E   I + H + GNRW++IA+ LPGRTDN +KN+W + ++++
Sbjct: 84  EEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRK 127

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Length = 107

 Score =  167 bits (425), Expect = 2e-52
 Identities = 33/107 (30%), Positives = 61/107 (57%), Gaps = 1/107 (0%)

Query: 23  RGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQ 82
           +  +T EED  L Q + R+    W  +++     R  + CR RW NY+ P ++    +P+
Sbjct: 1   KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMI-TRNPRQCRERWNNYINPALRTDPWSPE 59

Query: 83  EQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARHLK 129
           E M + + ++++G +W+KI++ L  R+DN I+N W    + +A+H K
Sbjct: 60  EDMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRWMMIARHRAKHQK 106

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159

 Score =  158 bits (402), Expect = 3e-48
 Identities = 46/104 (44%), Positives = 71/104 (68%), Gaps = 1/104 (0%)

Query: 21  LRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLT 80
           L +GPWT EED  +I+ + ++   RW+++AK     R GK CR RW N+L P+VK+ + T
Sbjct: 56  LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWT 114

Query: 81  PQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQ 124
            +E   I + H + GNRW++IA+ LPGRTDN IKN+W + ++++
Sbjct: 115 EEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 158

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159

 Score =  109 bits (274), Expect = 2e-29
 Identities = 31/91 (34%), Positives = 48/91 (52%), Gaps = 2/91 (2%)

Query: 21  LRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLT 80
           L +  WT EED  L + + ++    W ++A      RT   C+ RW   L P++ +G  T
Sbjct: 4   LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPELIKGPWT 62

Query: 81  PQEQMSILELHSKWG-NRWSKIAQHLPGRTD 110
            +E   +++L  K+G  RWS IA+HL GR  
Sbjct: 63  KEEDQRVIKLVQKYGPKRWSVIAKHLKGRIG 93

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Length = 126

 Score =  157 bits (398), Expect = 3e-48
 Identities = 34/123 (27%), Positives = 56/123 (45%), Gaps = 2/123 (1%)

Query: 17  DSDQLRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKR 76
           +    ++  +T EED +L + +++H    W ++A      R  + CR RW NYL P +  
Sbjct: 5   NLKAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATFP-NRNARQCRDRWKNYLAPSISH 62

Query: 77  GNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARHLKIDANSTT 136
              T +E   +++   ++G +W+ IA+  PGRTD  IKN W T   K             
Sbjct: 63  TPWTAEEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVTISNKLGIPQTQQMLEHH 122

Query: 137 FQE 139
              
Sbjct: 123 HHH 125

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A Length = 52

 Score = 88.3 bits (220), Expect = 8e-23
 Identities = 24/53 (45%), Positives = 34/53 (64%), Gaps = 1/53 (1%)

Query: 21 LRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPD 73
          L +GPWT EED  LI+ + ++   RW+++AK     R GK CR RW N+L P+
Sbjct: 1  LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPE 52

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 84.6 bits (210), Expect = 4e-21
 Identities = 14/67 (20%), Positives = 31/67 (46%), Gaps = 1/67 (1%)

Query: 18 SDQLRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRG 77
              + G W   ED +L   + ++ + +W+ +A     +++ K C+ RW  +L P +K+ 
Sbjct: 4  GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLH-RKSAKQCKARWYEWLDPSIKKT 62

Query: 78 NLTPQEQ 84
            +    
Sbjct: 63 EWSGPSS 69

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 38.0 bits (89), Expect = 2e-04
 Identities = 11/40 (27%), Positives = 17/40 (42%), Gaps = 1/40 (2%)

Query: 72  PDVKRGNLTPQEQMSILELHSKWG-NRWSKIAQHLPGRTD 110
              K G     E   +     K+G N+WS+IA  L  ++ 
Sbjct: 5   SSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSA 44

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Length = 52

 Score = 77.6 bits (192), Expect = 7e-19
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 21 LRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPD 73
          L +  WT EED  L + + ++    W ++A      RT   C+ RW   L P+
Sbjct: 1  LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPE 52

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Length = 52

 Score = 38.7 bits (91), Expect = 8e-05
 Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 74  VKRGNLTPQEQMSILELHSKWG-NRWSKIAQHLPGRTDNEIKNYWR 118
           + +   T +E   + +L  + G + W  IA +LP RTD + ++ W+
Sbjct: 1   LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQ 46

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3 Length = 105

 Score = 73.2 bits (179), Expect = 2e-16
 Identities = 21/91 (23%), Positives = 36/91 (39%), Gaps = 9/91 (9%)

Query: 22  RRGPWTLEEDTLLIQYISRHSEGRWNLLAKR---SGLKRTGKSCRLRWLNYLK-----PD 73
            R P+++ E   L+Q + +   GRW  +          RT    + +W   +      P 
Sbjct: 12  IRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQ 71

Query: 74  VKRGNLTPQEQM-SILELHSKWGNRWSKIAQ 103
            +RG   PQE +  +L  H  W  +  +  Q
Sbjct: 72  QRRGEPVPQELLNRVLNAHGYWTQQQMQQLQ 102

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa} Length = 122

 Score = 71.3 bits (174), Expect = 1e-15
 Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 9/88 (10%)

Query: 22  RRGPWTLEEDTLLIQYISRHSEGRWNLLAKR---SGLKRTGKSCRLRWLNYLK-----PD 73
            R P+T+ E  LL++ +     GRW  +  R   +   RT    + +W   +      P 
Sbjct: 30  IRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQ 89

Query: 74  VKRGNLTPQEQMS-ILELHSKWGNRWSK 100
            +RG   PQE +  +L   + W    S 
Sbjct: 90  QRRGAPVPQELLDRVLAAQAYWSVDSSG 117

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A Length = 83

 Score = 68.9 bits (168), Expect = 3e-15
 Identities = 18/82 (21%), Positives = 35/82 (42%), Gaps = 9/82 (10%)

Query: 25 PWTLEEDTLLIQYISRHSEGRWNLLAKR---SGLKRTGKSCRLRWLNYLK-----PDVKR 76
          P+++ E   L++ +     GRW  +  R   +   RT    + +W   +      P  +R
Sbjct: 2  PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRR 61

Query: 77 GNLTPQEQMS-ILELHSKWGNR 97
          G   PQ+ +  +L  H+ W  +
Sbjct: 62 GEPVPQDLLDRVLAAHAYWSQQ 83

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Length = 60

 Score = 67.3 bits (165), Expect = 7e-15
 Identities = 17/58 (29%), Positives = 23/58 (39%), Gaps = 1/58 (1%)

Query: 18 SDQLRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVK 75
          S    +  WT EED  L   + +  +  W  LA      RT + C+ RWL  L     
Sbjct: 3  SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFP-NRTDQQCQYRWLRVLSGPSS 59

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa} Length = 121

 Score = 69.1 bits (168), Expect = 8e-15
 Identities = 20/88 (22%), Positives = 37/88 (42%), Gaps = 9/88 (10%)

Query: 22  RRGPWTLEEDTLLIQYISRHSEGRWNLLAKR---SGLKRTGKSCRLRWLNYLK-----PD 73
            R P+++ E   L++ +     GRW  +  R   +   RT    + +W   +      P 
Sbjct: 16  IRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQ 75

Query: 74  VKRGNLTPQEQMS-ILELHSKWGNRWSK 100
            +RG   PQ+ +  +L  H+ W  +  K
Sbjct: 76  QRRGEPVPQDLLDRVLAAHAYWSQQQGK 103

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Length = 53

 Score = 55.4 bits (134), Expect = 1e-10
 Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 1/51 (1%)

Query: 22 RRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLK-RTGKSCRLRWLNYLK 71
          +R  W  EED  L   + ++ EG W+ +        RT    + RW    K
Sbjct: 1  KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Length = 53

 Score = 38.1 bits (89), Expect = 2e-04
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 3/48 (6%)

Query: 75  KRGNLTPQEQMSILELHSKWGN-RWSKIAQHLP--GRTDNEIKNYWRT 119
           KR     +E  ++     K+G   WSKI  H     RT   +K+ WRT
Sbjct: 1   KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRT 48

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 52.5 bits (126), Expect = 2e-09
 Identities = 12/62 (19%), Positives = 22/62 (35%), Gaps = 3/62 (4%)

Query: 17 DSDQLRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKR 76
               ++  W+ EE+  L+         +W  +A   G  RT   C   +   L    +R
Sbjct: 3  SGSSGKKTEWSREEEEKLLHLAKLMP-TQWRTIAPIIG--RTAAQCLEHYEFLLDKAAQR 59

Query: 77 GN 78
           +
Sbjct: 60 DS 61

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 37.1 bits (86), Expect = 4e-04
 Identities = 10/45 (22%), Positives = 20/45 (44%), Gaps = 1/45 (2%)

Query: 74  VKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWR 118
            K+   + +E+  +L L      +W  IA  + GRT  +   ++ 
Sbjct: 7   GKKTEWSREEEEKLLHLAKLMPTQWRTIAPII-GRTAAQCLEHYE 50

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Length = 69

 Score = 49.8 bits (119), Expect = 1e-08
 Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 1/54 (1%)

Query: 22 RRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLK-RTGKSCRLRWLNYLKPDV 74
          +R  W  EED  L   + ++ EG W+ +        RT    + RW    K  +
Sbjct: 9  KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKL 62

>1w0u_A Telomeric repeat binding factor 2; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle, nuclear protein; 1.8A {Homo sapiens} SCOP: a.4.1.4 Length = 55

 Score = 49.2 bits (118), Expect = 2e-08
 Identities = 12/52 (23%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 22 RRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLK-RTGKSCRLRWLNYLKP 72
          ++  WT+EE   +   + ++ EG W  ++K      RT    + RW    + 
Sbjct: 1  KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRL 52

>1w0u_A Telomeric repeat binding factor 2; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle, nuclear protein; 1.8A {Homo sapiens} SCOP: a.4.1.4 Length = 55

 Score = 38.8 bits (91), Expect = 8e-05
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 3/48 (6%)

Query: 75  KRGNLTPQEQMSILELHSKWGN-RWSKIAQHLP--GRTDNEIKNYWRT 119
           K+   T +E   +     K+G   W+ I+++ P   RT   IK+ WRT
Sbjct: 1   KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRT 48

>1vf9_A Telomeric repeat binding factor 2; MYB, helix-turn-helix, telomere, DNA binding protein; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1xg1_A 1vfc_A Length = 64

 Score = 48.2 bits (115), Expect = 5e-08
 Identities = 12/52 (23%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 22 RRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLK-RTGKSCRLRWLNYLKP 72
          ++  WT+EE   +   + ++ EG W  ++K      RT    + RW    + 
Sbjct: 10 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRL 61

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 60

 Score = 45.0 bits (107), Expect = 6e-07
 Identities = 10/49 (20%), Positives = 21/49 (42%), Gaps = 1/49 (2%)

Query: 22 RRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYL 70
              WT +E+  L++ +     G W  +A +    +T + C   ++ Y 
Sbjct: 7  GDPSWTAQEEMALLEAVMDCGFGNWQDVANQMC-TKTKEECEKHYMKYF 54

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 60

 Score = 36.2 bits (84), Expect = 7e-04
 Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 75  KRGNLTPQEQMSILELHSKWG-NRWSKIAQHLPGRTDNEIKNYW 117
              + T QE+M++LE     G   W  +A  +  +T  E + ++
Sbjct: 7   GDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHY 50

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Length = 89

 Score = 44.9 bits (106), Expect = 1e-06
 Identities = 10/55 (18%), Positives = 25/55 (45%)

Query: 63  RLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYW 117
                +  + ++     T +E  +  +   + G  WS IA+ +  +T ++ KN++
Sbjct: 3   HHHHHSSGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFY 57

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe} Length = 58

 Score = 42.8 bits (101), Expect = 4e-06
 Identities = 16/56 (28%), Positives = 22/56 (39%), Gaps = 1/56 (1%)

Query: 14 GENDSDQLRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNY 69
          G + S       W  +E+ LLI        G W  +A   G  RT + CR  +L  
Sbjct: 1  GSSGSSGFDEN-WGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKT 55

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 73

 Score = 40.6 bits (95), Expect = 3e-05
 Identities = 16/74 (21%), Positives = 29/74 (39%), Gaps = 5/74 (6%)

Query: 7  SSTSSIYGENDSDQLRRGPWTLEEDTLLIQYISRHSEG---RWNLLAKRSGLKRTGKSCR 63
          SS SS     +  +    PWT  +  LL   + ++  G    W+ +A+     ++ + C 
Sbjct: 2  SSGSSGSLRKERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVP-SKSKEDCI 60

Query: 64 LRWLNYLKPDVKRG 77
           R+   L      G
Sbjct: 61 ARY-KLLVSGPSSG 73

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 72

 Score = 39.4 bits (92), Expect = 8e-05
 Identities = 13/56 (23%), Positives = 28/56 (50%)

Query: 71  KPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQAR 126
                    T +E+    +  +K+G RW+KI++ +  RT  ++K+Y R   + + +
Sbjct: 4   GSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVK 59

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} Length = 79

 Score = 38.3 bits (89), Expect = 2e-04
 Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 2/63 (3%)

Query: 7  SSTSSIYGENDSDQLRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRW 66
          SS SS              WT +E  LL++ +  +    WN +++  G  RT   C L +
Sbjct: 2  SSGSSGTLAKSKGASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVG-SRTQDECILHF 59

Query: 67 LNY 69
          L  
Sbjct: 60 LRL 62

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} Length = 79

 Score = 37.9 bits (88), Expect = 3e-04
 Identities = 11/38 (28%), Positives = 23/38 (60%)

Query: 80  TPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYW 117
           T QE + +LE    + + W+K+++H+  RT +E   ++
Sbjct: 22  TEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHF 59

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A Length = 246

 Score = 41.1 bits (95), Expect = 2e-04
 Identities = 12/79 (15%), Positives = 30/79 (37%), Gaps = 8/79 (10%)

Query: 22 RRGPWTLEEDTLLIQYISRHSEGR-----WNLLAKRSGLK-RTGKSCRLRWLNYLKPDVK 75
           +  +T EED  ++  + ++   R     ++ ++    +   TG S R R+  YL   ++
Sbjct: 7  NKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISH--YVPNHTGNSIRHRFRVYLSKRLE 64

Query: 76 RGNLTPQEQMSILELHSKW 94
                +    + +     
Sbjct: 65 YVYEVDKFGKLVRDDDGNL 83

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens} Length = 73

 Score = 38.0 bits (88), Expect = 3e-04
 Identities = 13/55 (23%), Positives = 20/55 (36%), Gaps = 4/55 (7%)

Query: 23 RGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRG 77
           G +T EE   L +   +H    W  +     L R+  S + R    +K     G
Sbjct: 23 VGKYTPEEIEKLKELRIKH-GNDWATIGAA--LGRSASSVKDRC-RLMKDTCNTG 73

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens} Length = 73

 Score = 37.2 bits (86), Expect = 6e-04
 Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 1/63 (1%)

Query: 57  RTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNY 116
               S     L +       G  TP+E   + EL  K GN W+ I   L GR+ + +K+ 
Sbjct: 4   HHHHSSGRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDR 62

Query: 117 WRT 119
            R 
Sbjct: 63  CRL 65

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	324
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	100.0
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	100.0
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	100.0
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	100.0
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	100.0
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	100.0
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	99.96
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	99.85
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	99.84
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	99.76
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	99.73
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	99.72
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	99.7
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	99.7
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	99.7
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	99.69
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	99.69
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	99.68
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	99.68
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	99.64
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	99.63
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	99.63
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	99.63
3sjm_A	64	Telomeric repeat-binding factor 2; human telomeric	99.63
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	99.62
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	99.61
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	99.6
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	99.6
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	99.59
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	99.58
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	99.57
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	99.57
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	99.57
3sjm_A	64	Telomeric repeat-binding factor 2; human telomeric	99.55
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	99.54
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	99.54
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	99.53
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	99.52
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	99.51
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	99.5
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	99.22
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	99.47
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	99.45
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	99.45
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	99.39
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	99.38
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	99.37
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	99.01
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	99.32
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	99.29
1x58_A	62	Hypothetical protein 4930532D21RIK; MUS musculus a	99.27
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	99.24
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	99.24
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	99.22
2cjj_A	93	Radialis; plant development, DNA-binding protein,	99.22
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	99.17
2cjj_A	93	Radialis; plant development, DNA-binding protein,	99.03
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	99.0
3hm5_A	93	DNA methyltransferase 1-associated protein 1; DNA	98.99
1x58_A	62	Hypothetical protein 4930532D21RIK; MUS musculus a	98.85
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	98.84
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	98.82
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	98.81
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	98.62
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	98.57
1wgx_A	73	KIAA1903 protein; MYB DNA-binding domain, human cD	98.53
1fex_A	59	TRF2-interacting telomeric RAP1 protein; helix tur	98.51
1wgx_A	73	KIAA1903 protein; MYB DNA-binding domain, human cD	98.5
1fex_A	59	TRF2-interacting telomeric RAP1 protein; helix tur	98.41
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	98.4
1ofc_X	304	ISWI protein; nuclear protein, chromatin remodelin	98.14
2yqk_A	63	Arginine-glutamic acid dipeptide repeats protein;	98.13
1ug2_A	95	2610100B20RIK gene product; hypothetical protein,	98.09
4eef_G	74	F-HB80.4, designed hemagglutinin binding protein;	97.97
2lr8_A	70	CAsp8-associated protein 2; structural genomics, n	97.21
4iej_A	93	DNA methyltransferase 1-associated protein 1; DNA	97.96
4eef_G	74	F-HB80.4, designed hemagglutinin binding protein;	97.96
2yqk_A	63	Arginine-glutamic acid dipeptide repeats protein;	97.75
4a69_C	94	Nuclear receptor corepressor 2; transcription, hyd	97.71
2crg_A	70	Metastasis associated protein MTA3; transcription	97.66
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	97.61
3hm5_A	93	DNA methyltransferase 1-associated protein 1; DNA	97.58
2ebi_A	86	DNA binding protein GT-1; DNA-binding domain, phos	97.33
2ebi_A	86	DNA binding protein GT-1; DNA-binding domain, phos	97.27
4b4c_A	211	Chromodomain-helicase-DNA-binding protein 1; chrom	97.24
4a69_C	94	Nuclear receptor corepressor 2; transcription, hyd	97.2
2crg_A	70	Metastasis associated protein MTA3; transcription	97.13
2y9y_A	374	Imitation switch protein 1 (DEL_ATPase); transcrip	97.04
1ug2_A	95	2610100B20RIK gene product; hypothetical protein,	96.7
2lr8_A	70	CAsp8-associated protein 2; structural genomics, n	95.28
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	95.31
4iej_A	93	DNA methyltransferase 1-associated protein 1; DNA	95.16
4b4c_A	211	Chromodomain-helicase-DNA-binding protein 1; chrom	92.57
1ofc_X	304	ISWI protein; nuclear protein, chromatin remodelin	92.23
2xb0_X	270	Chromo domain-containing protein 1; hydrolase, DNA	91.13
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	90.48
2xb0_X	270	Chromo domain-containing protein 1; hydrolase, DNA	82.95

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=100.00  E-value=3.7e-36  Score=252.99  Aligned_cols=123  Identities=37%  Similarity=0.710  Sum_probs=103.2

Q ss_pred             CCCCCccccccccccCCCCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhCCCCCcccccceeeccccCCCcCCCCC
Q 020603            1 MSSFSKSSTSSIYGENDSDQLRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLT   80 (324)
Q Consensus         1 m~~~s~~~~~s~~~~~~~~~lkkg~WT~EED~~L~~lV~k~G~~~W~~IA~~l~~~Rt~~QCr~Rw~n~L~p~ikkg~WT   80 (324)
                      |-.++..+|..+|.+..+|.+++|+||+|||++|+++|++||.++|..||+.|+ +|++.||++||.++|+|.+++++||
T Consensus         5 ~~~Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~WT   83 (128)
T 1h8a_C            5 IKNRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWT   83 (128)
T ss_dssp             -----------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSS-SCCHHHHHHHHHHTTCSSSCCSCCC
T ss_pred             cCCCCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhc-CCcHHHHHHHHHHhcccccccccCC
Confidence            346788999999999999999999999999999999999999888999999999 9999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcCCChHHHHhhCCCCCHHHHHHHHHHHHHHH
Q 020603           81 PQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQ  124 (324)
Q Consensus        81 ~EED~~Ll~lv~~~G~kWs~IA~~lpgRT~~qcknRW~~~lkk~  124 (324)
                      +|||++|+++|.+||++|..||+.|||||+++|++||+.+++++
T Consensus        84 ~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~r~~~~~~~~  127 (128)
T 1h8a_C           84 EEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRK  127 (128)
T ss_dssp             HHHHHHHHHHHHHHCSCHHHHGGGSTTCCHHHHHHHHHTTTTC-
T ss_pred             HHHHHHHHHHHHHHCcCHHHHHHHCCCCCHHHHHHHHHHHHhcc
Confidence            99999999999999999999999999999999999999988764

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=100.00  E-value=2e-34  Score=234.32  Aligned_cols=104  Identities=44%  Similarity=0.868  Sum_probs=99.7

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhCCCCCcccccceeeccccCCCcCCCCCHHHHHHHHHHHhhcCCChH
Q 020603           20 QLRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWS   99 (324)
Q Consensus        20 ~lkkg~WT~EED~~L~~lV~k~G~~~W~~IA~~l~~~Rt~~QCr~Rw~n~L~p~ikkg~WT~EED~~Ll~lv~~~G~kWs   99 (324)
                      .+++|+||+|||++|+++|++||.++|..||+.|+ +|+++||++||.++|+|.+++++||+|||++|+++|.+||++|.
T Consensus         1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~   79 (105)
T 1gv2_A            1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWA   79 (105)
T ss_dssp             CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTST-TCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhc-CCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHH
Confidence            47899999999999999999999889999999999 99999999999999999999999999999999999999999999


Q ss_pred             HHHhhCCCCCHHHHHHHHHHHHHHH
Q 020603          100 KIAQHLPGRTDNEIKNYWRTRVQKQ  124 (324)
Q Consensus       100 ~IA~~lpgRT~~qcknRW~~~lkk~  124 (324)
                      .||+.|||||++||++||+.+++++
T Consensus        80 ~Ia~~l~gRt~~~~k~rw~~~~~~~  104 (105)
T 1gv2_A           80 EIAKLLPGRTDNAIKNHWNSTMRRK  104 (105)
T ss_dssp             HHHTTCTTCCHHHHHHHHHHHTC--
T ss_pred             HHHHHcCCCCHHHHHHHHHHHHhcc
Confidence            9999999999999999999998875

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=100.00  E-value=2.6e-34  Score=235.13  Aligned_cols=105  Identities=30%  Similarity=0.605  Sum_probs=101.1

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCChHHHHHHhCCCCCcccccceeeccccCCCcCCCCCHHHHHHHHHHHhhcCCChHHHH
Q 020603           23 RGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIA  102 (324)
Q Consensus        23 kg~WT~EED~~L~~lV~k~G~~~W~~IA~~l~~~Rt~~QCr~Rw~n~L~p~ikkg~WT~EED~~Ll~lv~~~G~kWs~IA  102 (324)
                      ||+||+|||++|+++|++||.++|..||..|+ +|+++||++||.++|+|.+++|+||+|||++|+++|.+||++|..||
T Consensus         1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia   79 (107)
T 2k9n_A            1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMI-TRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKIS   79 (107)
T ss_dssp             CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTT-TSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcC-CCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHHH
Confidence            68999999999999999999889999999999 99999999999999999999999999999999999999999999999


Q ss_pred             hhCCCCCHHHHHHHHHHHHHHHHHhc
Q 020603          103 QHLPGRTDNEIKNYWRTRVQKQARHL  128 (324)
Q Consensus       103 ~~lpgRT~~qcknRW~~~lkk~~r~~  128 (324)
                      +.|||||+++|++||+.++++..++.
T Consensus        80 ~~l~gRt~~~~k~rw~~l~r~~~~~~  105 (107)
T 2k9n_A           80 KFLKNRSDNNIRNRWMMIARHRAKHQ  105 (107)
T ss_dssp             HHHSSSCHHHHHHHHHHHHHHHHSST
T ss_pred             HHCCCCCHHHHHHHHHHHHhhHHHhh
Confidence            99999999999999999998876543

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=100.00  E-value=2.6e-33  Score=235.48  Aligned_cols=105  Identities=32%  Similarity=0.663  Sum_probs=101.1

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhCCCCCcccccceeeccccCCCcCCCCCHHHHHHHHHHHhhcCC
Q 020603           17 DSDQLRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGN   96 (324)
Q Consensus        17 ~~~~lkkg~WT~EED~~L~~lV~k~G~~~W~~IA~~l~~~Rt~~QCr~Rw~n~L~p~ikkg~WT~EED~~Ll~lv~~~G~   96 (324)
                      .+...++|+||+|||++|+++|++||. +|..||+.|+ +|+++|||+||.++|+|.+++++||+|||++|+++|.+||+
T Consensus         5 ~~~~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~   82 (126)
T 3osg_A            5 NLKAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATFP-NRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGR   82 (126)
T ss_dssp             C-CBCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHTCT-TCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCS
T ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcC-CCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCc
Confidence            567899999999999999999999998 9999999999 99999999999999999999999999999999999999999


Q ss_pred             ChHHHHhhCCCCCHHHHHHHHHHHHHH
Q 020603           97 RWSKIAQHLPGRTDNEIKNYWRTRVQK  123 (324)
Q Consensus        97 kWs~IA~~lpgRT~~qcknRW~~~lkk  123 (324)
                      +|..||+.|+|||+++||+||+.++++
T Consensus        83 ~W~~Ia~~l~gRt~~~~k~rw~~l~~k  109 (126)
T 3osg_A           83 QWAIIAKFFPGRTDIHIKNRWVTISNK  109 (126)
T ss_dssp             CHHHHHTTSTTCCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHcCCCCHHHHHHHHHHHHHh
Confidence            999999999999999999999988776

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=100.00  E-value=1.2e-33  Score=245.63  Aligned_cols=122  Identities=38%  Similarity=0.726  Sum_probs=112.8

Q ss_pred             CCCCccccccccccCCCCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhCCCCCcccccceeeccccCCCcCCCCCH
Q 020603            2 SSFSKSSTSSIYGENDSDQLRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTP   81 (324)
Q Consensus         2 ~~~s~~~~~s~~~~~~~~~lkkg~WT~EED~~L~~lV~k~G~~~W~~IA~~l~~~Rt~~QCr~Rw~n~L~p~ikkg~WT~   81 (324)
                      ..++..+|..+|.+..+|.+++|+||+|||++|+++|.+||.++|..||+.|+ +|++.||+.||.++|+|.+++++||+
T Consensus        37 ~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~  115 (159)
T 1h89_C           37 PNRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTE  115 (159)
T ss_dssp             ------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTST-TCCHHHHHHHHHHTTCTTSCCSCCCH
T ss_pred             CCCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccHHHHHHHcC-CCCHHHHHHHHHHHhCccccccCCCh
Confidence            35778899999999999999999999999999999999999878999999999 99999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcCCChHHHHhhCCCCCHHHHHHHHHHHHHHH
Q 020603           82 QEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQ  124 (324)
Q Consensus        82 EED~~Ll~lv~~~G~kWs~IA~~lpgRT~~qcknRW~~~lkk~  124 (324)
                      |||++|++++.+||++|..||+.|||||+++|++||+.+++++
T Consensus       116 eEd~~L~~~~~~~g~~W~~Ia~~l~gRt~~~~knr~~~~~r~~  158 (159)
T 1h89_C          116 EEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK  158 (159)
T ss_dssp             HHHHHHHHHHHHHCSCHHHHHTTSTTCCHHHHHHHHHTTTCC-
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHhcc
Confidence            9999999999999999999999999999999999999988764

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=100.00  E-value=1.4e-33  Score=238.39  Aligned_cols=107  Identities=36%  Similarity=0.688  Sum_probs=102.3

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhCCCCCcccccceeeccccCCCcCCCCCHHHHHHHHHHHhhcCCChHHH
Q 020603           22 RRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKI  101 (324)
Q Consensus        22 kkg~WT~EED~~L~~lV~k~G~~~W~~IA~~l~~~Rt~~QCr~Rw~n~L~p~ikkg~WT~EED~~Ll~lv~~~G~kWs~I  101 (324)
                      .||+||+|||++|+++|.+||.++|..||..|+ +|+++||++||.++|+|.+++|+||+|||++|+++|.+||++|..|
T Consensus         1 vKg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~I   79 (131)
T 3zqc_A            1 MKGPFTEAEDDLIREYVKENGPQNWPRITSFLP-NRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVI   79 (131)
T ss_dssp             CCSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCT-TSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHC-CCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHH
Confidence            479999999999999999999889999999999 9999999999999999999999999999999999999999999999


Q ss_pred             HhhCCCCCHHHHHHHHHHHHHHHHHhcC
Q 020603          102 AQHLPGRTDNEIKNYWRTRVQKQARHLK  129 (324)
Q Consensus       102 A~~lpgRT~~qcknRW~~~lkk~~r~~~  129 (324)
                      |++|+|||+++|++||+.+|++.+....
T Consensus        80 a~~l~gRt~~~~k~rw~~~l~~~~~~~~  107 (131)
T 3zqc_A           80 AKLIPGRTDNAIKNRWNSSISKRISTNS  107 (131)
T ss_dssp             TTTSTTCCHHHHHHHHHHTTGGGCCCCT
T ss_pred             HHHcCCCCHHHHHHHHHHHHHHHhhcCC
Confidence            9999999999999999999998765543

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=99.96  E-value=5.7e-31  Score=228.72  Aligned_cols=112  Identities=29%  Similarity=0.634  Sum_probs=66.4

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhCCCCCcccccceeeccccCCCcCCCCCHHHHHHHHHHHhhcCC-Ch
Q 020603           20 QLRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGN-RW   98 (324)
Q Consensus        20 ~lkkg~WT~EED~~L~~lV~k~G~~~W~~IA~~l~~~Rt~~QCr~Rw~n~L~p~ikkg~WT~EED~~Ll~lv~~~G~-kW   98 (324)
                      .+++++||+|||++|+++|++||.++|..||+.|+ +|+++||++||.++|+|.+++++||+|||++|+++|.+||. +|
T Consensus         3 ~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W   81 (159)
T 1h89_C            3 HLGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRW   81 (159)
T ss_dssp             -----------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcC-CCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccH
Confidence            47899999999999999999999889999999999 99999999999999999999999999999999999999996 69


Q ss_pred             HHHHhhCCCCCHHHHHHHHHHHHHHHHHhcCCCC
Q 020603           99 SKIAQHLPGRTDNEIKNYWRTRVQKQARHLKIDA  132 (324)
Q Consensus        99 s~IA~~lpgRT~~qcknRW~~~lkk~~r~~~~~~  132 (324)
                      ..||+.|+|||+.||++||.++|.+.+++...+.
T Consensus        82 ~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~  115 (159)
T 1h89_C           82 SVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTE  115 (159)
T ss_dssp             HHHHHTSTTCCHHHHHHHHHHTTCTTSCCSCCCH
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHhCccccccCCCh
Confidence            9999999999999999999999988765554443

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.85  E-value=2.3e-22  Score=152.65  Aligned_cols=67  Identities=21%  Similarity=0.557  Sum_probs=64.4

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhCCCCCcccccceeeccccCCCcCCCCCHHHH
Q 020603           17 DSDQLRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQ   84 (324)
Q Consensus        17 ~~~~lkkg~WT~EED~~L~~lV~k~G~~~W~~IA~~l~~~Rt~~QCr~Rw~n~L~p~ikkg~WT~EED   84 (324)
                      ..+.+++|+||+|||++|+++|.+||.++|..||+.|+ +|+++|||+||.++|+|.+++++||+|||
T Consensus         3 s~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd   69 (70)
T 2dim_A            3 SGSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLH-RKSAKQCKARWYEWLDPSIKKTEWSGPSS   69 (70)
T ss_dssp             SCSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHST-TCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhc-CCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence            45789999999999999999999999779999999999 99999999999999999999999999997

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=99.84  E-value=6.5e-22  Score=166.03  Aligned_cols=83  Identities=28%  Similarity=0.627  Sum_probs=56.6

Q ss_pred             HHHHhCCCCCcccccceeeccccCCCcCCCCCHHHHHHHHHHHhhcCC-ChHHHHhhCCCCCHHHHHHHHHHHHHHHHHh
Q 020603           49 LAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGN-RWSKIAQHLPGRTDNEIKNYWRTRVQKQARH  127 (324)
Q Consensus        49 IA~~l~~~Rt~~QCr~Rw~n~L~p~ikkg~WT~EED~~Ll~lv~~~G~-kWs~IA~~lpgRT~~qcknRW~~~lkk~~r~  127 (324)
                      ||+.|+ +|++.||+.||.++|+|.+++|+||+|||++|+++|.+||. +|..||+.|+|||+.||++||.++|.+.+++
T Consensus         1 Ia~~~~-~Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~   79 (128)
T 1h8a_C            1 MEAVIK-NRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKK   79 (128)
T ss_dssp             ----------------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSSSCC
T ss_pred             CccccC-CCCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhccccccc
Confidence            789999 99999999999999999999999999999999999999995 6999999999999999999999999887665


Q ss_pred             cCCCC
Q 020603          128 LKIDA  132 (324)
Q Consensus       128 ~~~~~  132 (324)
                      ...+.
T Consensus        80 ~~WT~   84 (128)
T 1h8a_C           80 TSWTE   84 (128)
T ss_dssp             SCCCH
T ss_pred             ccCCH
Confidence            55443

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A

Probab=99.76  E-value=4.2e-19  Score=163.09  Aligned_cols=106  Identities=17%  Similarity=0.324  Sum_probs=92.0

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCC-----hHHHHHHhCCCCCcccccceeeccccCCCc-----------------
Q 020603           18 SDQLRRGPWTLEEDTLLIQYISRHSEGR-----WNLLAKRSGLKRTGKSCRLRWLNYLKPDVK-----------------   75 (324)
Q Consensus        18 ~~~lkkg~WT~EED~~L~~lV~k~G~~~-----W~~IA~~l~~~Rt~~QCr~Rw~n~L~p~ik-----------------   75 (324)
                      .+.++|++||+|||++|+++|+++|..+     |.+||+.|+ |||+.|||.||+.+|.+.+.                 
T Consensus         3 ~~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~Lp-GRT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~G   81 (246)
T 1ign_A            3 LPSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVP-NHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDG   81 (246)
T ss_dssp             -----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTST-TSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTS
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcC-CCCHHHHHHHHHHHHhhhcccccccCcchhhhhccCC
Confidence            3568899999999999999999998743     999999999 99999999999999999986                 


Q ss_pred             ------------CCCCCHHHHHHHHHHHhh-c--------------------------------CC--------------
Q 020603           76 ------------RGNLTPQEQMSILELHSK-W--------------------------------GN--------------   96 (324)
Q Consensus        76 ------------kg~WT~EED~~Ll~lv~~-~--------------------------------G~--------------   96 (324)
                                  +..||.|||-.|+..+.+ |                                |.              
T Consensus        82 n~ikis~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~  161 (246)
T 1ign_A           82 NLIKTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYR  161 (246)
T ss_dssp             CBCEESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------C
T ss_pred             CceeeeccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhc
Confidence                        789999999999999876 1                                11              


Q ss_pred             -----------ChHHHHhhCCCCCHHHHHHHHHHHHHHH
Q 020603           97 -----------RWSKIAQHLPGRTDNEIKNYWRTRVQKQ  124 (324)
Q Consensus        97 -----------kWs~IA~~lpgRT~~qcknRW~~~lkk~  124 (324)
                                 .|.+||+.+|+||.+.+|+||+.+|+..
T Consensus       162 ~~~~~gp~~~~~fk~ia~~~P~HT~~SWRdRyrKfl~~~  200 (246)
T 1ign_A          162 TQSRRGPIAREFFKHFAEEHAAHTENAWRDRFRKFLLAY  200 (246)
T ss_dssp             CCCCCCCCCTTHHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred             cccccCcchHHHHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence                       5999999999999999999999988763

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}

Probab=99.73  E-value=1e-18  Score=146.18  Aligned_cols=84  Identities=23%  Similarity=0.447  Sum_probs=79.2

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHh----CCCCCcccccceeecccc-----CCCcCC-CCCHHHHH
Q 020603           16 NDSDQLRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRS----GLKRTGKSCRLRWLNYLK-----PDVKRG-NLTPQEQM   85 (324)
Q Consensus        16 ~~~~~lkkg~WT~EED~~L~~lV~k~G~~~W~~IA~~l----~~~Rt~~QCr~Rw~n~L~-----p~ikkg-~WT~EED~   85 (324)
                      ..++..++++||+|||++|+++|++||.++|..|++.+    + +||..||++||+++|+     |.++++ +|+++|+.
T Consensus        10 ~~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~-~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~   88 (121)
T 2juh_A           10 ELSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNAD-HRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLD   88 (121)
T ss_dssp             CCCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCS-SCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHH
T ss_pred             cccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccC-CCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHH
Confidence            36778999999999999999999999999999999986    5 8999999999999998     999999 99999999


Q ss_pred             HHHHHHhhcCCChHH
Q 020603           86 SILELHSKWGNRWSK  100 (324)
Q Consensus        86 ~Ll~lv~~~G~kWs~  100 (324)
                      +|++++..+|++|.+
T Consensus        89 rv~~~h~~~gn~~~~  103 (121)
T 2juh_A           89 RVLAAHAYWSQQQGK  103 (121)
T ss_dssp             HHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHccchhc
Confidence            999999999999976

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}

Probab=99.72  E-value=2.3e-18  Score=132.30  Aligned_cols=58  Identities=29%  Similarity=0.431  Sum_probs=47.3

Q ss_pred             cceeeccccCCCcCCCCCHHHHHHHHHHHhhcCCChHHHHhhCCCCCHHHHHHHHHHHH
Q 020603           63 RLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRV  121 (324)
Q Consensus        63 r~Rw~n~L~p~ikkg~WT~EED~~Ll~lv~~~G~kWs~IA~~lpgRT~~qcknRW~~~l  121 (324)
                      --||.++|+|++++++||+|||++|+++|++||++|++||+.| |||++|||+||+.+.
T Consensus        10 ~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L~   67 (73)
T 2llk_A           10 GRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLMK   67 (73)
T ss_dssp             ---------CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHCS
T ss_pred             CcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHHH
Confidence            4589999999999999999999999999999999999999999 999999999999643

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}

Probab=99.70  E-value=6.4e-18  Score=124.28  Aligned_cols=57  Identities=30%  Similarity=0.557  Sum_probs=54.4

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhCCCCCcccccceeeccccCCCc
Q 020603           18 SDQLRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVK   75 (324)
Q Consensus        18 ~~~lkkg~WT~EED~~L~~lV~k~G~~~W~~IA~~l~~~Rt~~QCr~Rw~n~L~p~ik   75 (324)
                      .|.+++++||+|||++|+++|.+||.++|..||+.|+ +|++.||++||.++|+|.++
T Consensus         3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~i~   59 (60)
T 2d9a_A            3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFP-NRTDQQCQYRWLRVLSGPSS   59 (60)
T ss_dssp             SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCS-SSCHHHHHHHHHHTSCSSSC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcc-CCCHHHHHHHHHHHcCCccC
Confidence            5789999999999999999999999779999999999 99999999999999999875

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}

Probab=99.70  E-value=8e-18  Score=140.99  Aligned_cols=80  Identities=26%  Similarity=0.471  Sum_probs=74.4

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHh----CCCCCcccccceeeccc-----cCCCcCCCCCHHH-HHH
Q 020603           17 DSDQLRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRS----GLKRTGKSCRLRWLNYL-----KPDVKRGNLTPQE-QMS   86 (324)
Q Consensus        17 ~~~~lkkg~WT~EED~~L~~lV~k~G~~~W~~IA~~l----~~~Rt~~QCr~Rw~n~L-----~p~ikkg~WT~EE-D~~   86 (324)
                      .....++++||+|||+.|+++|++||.++|..|++.+    + +||..||++||++++     +|.++++.|+++| +++
T Consensus        25 ~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~-~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~  103 (122)
T 2roh_A           25 FGQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVH-HRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDR  103 (122)
T ss_dssp             CCCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSC-CCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHH
T ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccC-CCCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHH
Confidence            4567789999999999999999999999999999975    5 899999999999999     7999999999999 899


Q ss_pred             HHHHHhhcCCC
Q 020603           87 ILELHSKWGNR   97 (324)
Q Consensus        87 Ll~lv~~~G~k   97 (324)
                      |++++..||++
T Consensus       104 v~~~h~~~g~~  114 (122)
T 2roh_A          104 VLAAQAYWSVD  114 (122)
T ss_dssp             HHHHHHHHHSS
T ss_pred             HHHHHHHHhhH
Confidence            99999999974

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.70  E-value=2.2e-17  Score=123.68  Aligned_cols=61  Identities=20%  Similarity=0.241  Sum_probs=57.7

Q ss_pred             cccCCCcCCCCCHHHHHHHHHHHhhcCCChHHHHhhCCCCCHHHHHHHHHHHHHHHHHhcCC
Q 020603           69 YLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARHLKI  130 (324)
Q Consensus        69 ~L~p~ikkg~WT~EED~~Ll~lv~~~G~kWs~IA~~lpgRT~~qcknRW~~~lkk~~r~~~~  130 (324)
                      +|+|.+++++||+|||++|+++|++||.+|.+||+ |+|||++|||+||+.+|++.+++..-
T Consensus         2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~~~   62 (66)
T 2din_A            2 SSGSSGKKTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRDSG   62 (66)
T ss_dssp             CCSSSSSCCCCCHHHHHHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSSSC
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHHHHHhChHhcCCCC
Confidence            79999999999999999999999999999999999 88999999999999999998887643

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A

Probab=99.69  E-value=7.8e-18  Score=120.43  Aligned_cols=52  Identities=46%  Similarity=0.912  Sum_probs=49.7

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhCCCCCcccccceeeccccCC
Q 020603           21 LRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPD   73 (324)
Q Consensus        21 lkkg~WT~EED~~L~~lV~k~G~~~W~~IA~~l~~~Rt~~QCr~Rw~n~L~p~   73 (324)
                      +++|+||+|||++|+++|.+||.++|..||+.|+ +|+++|||+||.++|+|+
T Consensus         1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~   52 (52)
T 1gvd_A            1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE   52 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTST-TCCHHHHHHHHHHTTSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcC-CCCHHHHHHHHHHHcCcC
Confidence            5899999999999999999999878999999999 999999999999999984

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.69  E-value=2.9e-17  Score=125.26  Aligned_cols=62  Identities=23%  Similarity=0.316  Sum_probs=57.3

Q ss_pred             ccCCCcCCCCCHHHHHHHHHHHhhcCCChHHHHhhCCCCCHHHHHHHHHHHHHHHHHhcCCCC
Q 020603           70 LKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARHLKIDA  132 (324)
Q Consensus        70 L~p~ikkg~WT~EED~~Ll~lv~~~G~kWs~IA~~lpgRT~~qcknRW~~~lkk~~r~~~~~~  132 (324)
                      ++|.+++++||+|||++|+++|.+||.+|..||++|+|||++|||+||+.++++.++. ++++
T Consensus         3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~-g~~~   64 (72)
T 2cu7_A            3 SGSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC-GLDK   64 (72)
T ss_dssp             CCCSSCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS-CTTC
T ss_pred             CCCCcCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc-CCCC
Confidence            5789999999999999999999999999999999999999999999999999997766 5544

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A

Probab=99.68  E-value=1.7e-17  Score=125.45  Aligned_cols=65  Identities=22%  Similarity=0.357  Sum_probs=60.1

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhCC-CCCcccccceeeccccCCCcCCCCC
Q 020603           16 NDSDQLRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGL-KRTGKSCRLRWLNYLKPDVKRGNLT   80 (324)
Q Consensus        16 ~~~~~lkkg~WT~EED~~L~~lV~k~G~~~W~~IA~~l~~-~Rt~~QCr~Rw~n~L~p~ikkg~WT   80 (324)
                      ..++..++++||+|||++|+++|++||.++|..||+.|++ +|++.||++||.++|+|.+.++..+
T Consensus         3 ~~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~~   68 (69)
T 1ity_A            3 EKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDSE   68 (69)
T ss_dssp             CTTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            4677889999999999999999999998899999999986 8999999999999999999987754

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A

Probab=99.68  E-value=1.2e-17  Score=119.39  Aligned_cols=52  Identities=31%  Similarity=0.670  Sum_probs=48.5

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhCCCCCcccccceeeccccCC
Q 020603           21 LRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPD   73 (324)
Q Consensus        21 lkkg~WT~EED~~L~~lV~k~G~~~W~~IA~~l~~~Rt~~QCr~Rw~n~L~p~   73 (324)
                      +++|+||+|||++|+++|.+||.++|..||+.|+ +|++.||++||.++|+|+
T Consensus         1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~   52 (52)
T 1guu_A            1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPE   52 (52)
T ss_dssp             --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTST-TCCHHHHHHHHHHHHSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcC-CCCHHHHHHHHHHHcCcC
Confidence            5799999999999999999999889999999999 999999999999999984

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}

Probab=99.64  E-value=8.2e-17  Score=118.33  Aligned_cols=54  Identities=22%  Similarity=0.440  Sum_probs=50.7

Q ss_pred             cCCCcCCCCCHHHHHHHHHHHhhcC-CChHHHHhhCCCCCHHHHHHHHHHHHHHH
Q 020603           71 KPDVKRGNLTPQEQMSILELHSKWG-NRWSKIAQHLPGRTDNEIKNYWRTRVQKQ  124 (324)
Q Consensus        71 ~p~ikkg~WT~EED~~Ll~lv~~~G-~kWs~IA~~lpgRT~~qcknRW~~~lkk~  124 (324)
                      .|.+++++||+|||++|+++|.+|| ++|..||+.|+|||+.|||+||+++|++.
T Consensus         3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~   57 (60)
T 2d9a_A            3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGP   57 (60)
T ss_dssp             SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSS
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCc
Confidence            4778999999999999999999999 69999999999999999999999988764

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=99.63  E-value=9.7e-18  Score=141.30  Aligned_cols=98  Identities=15%  Similarity=0.250  Sum_probs=76.3

Q ss_pred             CCCCccccccccccCCCCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhCCCCCcccccceeeccccCCCcCCCCCH
Q 020603            2 SSFSKSSTSSIYGENDSDQLRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTP   81 (324)
Q Consensus         2 ~~~s~~~~~s~~~~~~~~~lkkg~WT~EED~~L~~lV~k~G~~~W~~IA~~l~~~Rt~~QCr~Rw~n~L~p~ikkg~WT~   81 (324)
                      -.++..+|..+|.+..+|.+++|+||+|||++|+++|.+||. +|..||+.|+ ||+..||+.||.++|++.+..+.|+.
T Consensus        33 ~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~-~W~~Ia~~l~-gRt~~~~k~rw~~~l~~~~~~~~~~~  110 (131)
T 3zqc_A           33 PNRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGS-KWSVIAKLIP-GRTDNAIKNRWNSSISKRISTNSNHK  110 (131)
T ss_dssp             TTSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCS-CHHHHTTTST-TCCHHHHHHHHHHTTGGGCCCCTTSC
T ss_pred             CCCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcC-CCCHHHHHHHHHHHHHHHhhcCCCcc
Confidence            357888999999999999999999999999999999999996 8999999999 99999999999999999999999886


Q ss_pred             HHHHHHHHHHhhcCCChHHHHhhC
Q 020603           82 QEQMSILELHSKWGNRWSKIAQHL  105 (324)
Q Consensus        82 EED~~Ll~lv~~~G~kWs~IA~~l  105 (324)
                      +-    +......+.+|..|++.|
T Consensus       111 ~~----~~p~~~kk~~~~~i~k~~  130 (131)
T 3zqc_A          111 EI----LLPDRSKKRKAADVPKKL  130 (131)
T ss_dssp             CC----CCCCCC------------
T ss_pred             cc----cCchhhhhhhhhhcchhc
Confidence            53    111123345688888766

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.63  E-value=1.7e-16  Score=120.22  Aligned_cols=63  Identities=21%  Similarity=0.335  Sum_probs=57.3

Q ss_pred             cCCCcCCCCCHHHHHHHHHHHhhcC-CChHHHHhhCCCCCHHHHHHHHHHHHHHHHHhcCCCCC
Q 020603           71 KPDVKRGNLTPQEQMSILELHSKWG-NRWSKIAQHLPGRTDNEIKNYWRTRVQKQARHLKIDAN  133 (324)
Q Consensus        71 ~p~ikkg~WT~EED~~Ll~lv~~~G-~kWs~IA~~lpgRT~~qcknRW~~~lkk~~r~~~~~~~  133 (324)
                      .+.+++++||+|||++|+++|.+|| ++|..||+.|+|||+.|||+||+++|++.+++..++..
T Consensus         4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~~~wt~e   67 (70)
T 2dim_A            4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSGP   67 (70)
T ss_dssp             CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCCCCSCCS
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccCCCCChH
Confidence            4678999999999999999999999 79999999999999999999999999998777665543

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A

Probab=99.63  E-value=2.5e-16  Score=112.48  Aligned_cols=50  Identities=26%  Similarity=0.488  Sum_probs=46.2

Q ss_pred             CcCCCCCHHHHHHHHHHHhhcCC-ChHHHHhhCCCCCHHHHHHHHHHHHHH
Q 020603           74 VKRGNLTPQEQMSILELHSKWGN-RWSKIAQHLPGRTDNEIKNYWRTRVQK  123 (324)
Q Consensus        74 ikkg~WT~EED~~Ll~lv~~~G~-kWs~IA~~lpgRT~~qcknRW~~~lkk  123 (324)
                      +++++||+|||++|+++|.+||. +|..||+.|+|||+.||++||+++|++
T Consensus         1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P   51 (52)
T 1guu_A            1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP   51 (52)
T ss_dssp             --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence            47899999999999999999997 999999999999999999999998864

>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A

Probab=99.63  E-value=8.8e-17  Score=120.41  Aligned_cols=57  Identities=21%  Similarity=0.456  Sum_probs=50.0

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhCC-CCCcccccceeeccccCCCc
Q 020603           19 DQLRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGL-KRTGKSCRLRWLNYLKPDVK   75 (324)
Q Consensus        19 ~~lkkg~WT~EED~~L~~lV~k~G~~~W~~IA~~l~~-~Rt~~QCr~Rw~n~L~p~ik   75 (324)
                      ...+|++||+|||++|+++|++||.++|..||+.+++ +|++.||++||++++++.++
T Consensus         7 ~~~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~glN   64 (64)
T 3sjm_A            7 NITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN   64 (64)
T ss_dssp             ---CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred             CCCCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCCC
Confidence            4468999999999999999999998899999998653 79999999999999998764

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=99.62  E-value=2e-16  Score=116.59  Aligned_cols=55  Identities=20%  Similarity=0.454  Sum_probs=51.8

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhCCCCCcccccceeeccccCC
Q 020603           18 SDQLRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPD   73 (324)
Q Consensus        18 ~~~lkkg~WT~EED~~L~~lV~k~G~~~W~~IA~~l~~~Rt~~QCr~Rw~n~L~p~   73 (324)
                      .+.+++++||+|||++|+++|++||.++|.+||+.|+ +|++.|||+||.++|.+.
T Consensus         3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~r~~~~l~~~   57 (60)
T 1x41_A            3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMC-TKTKEECEKHYMKYFSGP   57 (60)
T ss_dssp             CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHT-TSCHHHHHHHHHHHTTCS
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhC-CCCHHHHHHHHHHHccCC
Confidence            4679999999999999999999999779999999999 999999999999999864

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A

Probab=99.61  E-value=4.4e-16  Score=111.29  Aligned_cols=50  Identities=32%  Similarity=0.699  Sum_probs=46.9

Q ss_pred             CcCCCCCHHHHHHHHHHHhhcCC-ChHHHHhhCCCCCHHHHHHHHHHHHHH
Q 020603           74 VKRGNLTPQEQMSILELHSKWGN-RWSKIAQHLPGRTDNEIKNYWRTRVQK  123 (324)
Q Consensus        74 ikkg~WT~EED~~Ll~lv~~~G~-kWs~IA~~lpgRT~~qcknRW~~~lkk  123 (324)
                      +++++||+|||++|+++|.+||. +|..||+.|+|||+.|||+||.++|++
T Consensus         1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P   51 (52)
T 1gvd_A            1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP   51 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence            47899999999999999999996 699999999999999999999998864

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A

Probab=99.60  E-value=7.7e-16  Score=116.32  Aligned_cols=60  Identities=27%  Similarity=0.314  Sum_probs=54.2

Q ss_pred             cccCCCcCCCCCHHHHHHHHHHHhhcC-CChHHHHhhCC--CCCHHHHHHHHHHHHHHHHHhc
Q 020603           69 YLKPDVKRGNLTPQEQMSILELHSKWG-NRWSKIAQHLP--GRTDNEIKNYWRTRVQKQARHL  128 (324)
Q Consensus        69 ~L~p~ikkg~WT~EED~~Ll~lv~~~G-~kWs~IA~~lp--gRT~~qcknRW~~~lkk~~r~~  128 (324)
                      ...+..++++||+|||++|+++|.+|| ++|..||+.|+  |||+.|||+||+++|++.+.+.
T Consensus         3 ~~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~   65 (69)
T 1ity_A            3 EKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISS   65 (69)
T ss_dssp             CTTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCC
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCC
Confidence            345677899999999999999999999 79999999999  9999999999999999866544

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.60  E-value=1.2e-16  Score=119.61  Aligned_cols=60  Identities=18%  Similarity=0.350  Sum_probs=55.2

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhCCCCCcccccceeeccccCCCcCCC
Q 020603           16 NDSDQLRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGN   78 (324)
Q Consensus        16 ~~~~~lkkg~WT~EED~~L~~lV~k~G~~~W~~IA~~l~~~Rt~~QCr~Rw~n~L~p~ikkg~   78 (324)
                      +++|.+++++||+|||++|+++|+.+|. +|.+||+ ++ +|++.|||.||.++|+|.++++.
T Consensus         2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~-~~-gRt~~qcr~Rw~~~l~~~~~~~~   61 (66)
T 2din_A            2 SSGSSGKKTEWSREEEEKLLHLAKLMPT-QWRTIAP-II-GRTAAQCLEHYEFLLDKAAQRDS   61 (66)
T ss_dssp             CCSSSSSCCCCCHHHHHHHHHHHHHCTT-CHHHHHH-HH-SSCHHHHHHHHHHHHHHHHHSSS
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHcCC-CHHHHhc-cc-CcCHHHHHHHHHHHhChHhcCCC
Confidence            4789999999999999999999999998 9999999 77 79999999999999999776653

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A

Probab=99.59  E-value=1.4e-15  Score=109.28  Aligned_cols=49  Identities=33%  Similarity=0.464  Sum_probs=46.2

Q ss_pred             cCCCCCHHHHHHHHHHHhhcC-CChHHHHhhCC--CCCHHHHHHHHHHHHHH
Q 020603           75 KRGNLTPQEQMSILELHSKWG-NRWSKIAQHLP--GRTDNEIKNYWRTRVQK  123 (324)
Q Consensus        75 kkg~WT~EED~~Ll~lv~~~G-~kWs~IA~~lp--gRT~~qcknRW~~~lkk  123 (324)
                      ++++||+|||++|+++|.+|| ++|..||+.|+  |||+.||++||.++++.
T Consensus         1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k~   52 (53)
T 1w0t_A            1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKL   52 (53)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHTC
T ss_pred             CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence            478999999999999999999 69999999999  99999999999998864

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=99.58  E-value=2e-15  Score=111.25  Aligned_cols=52  Identities=21%  Similarity=0.345  Sum_probs=48.7

Q ss_pred             CCCcCCCCCHHHHHHHHHHHhhcC-CChHHHHhhCCCCCHHHHHHHHHHHHHH
Q 020603           72 PDVKRGNLTPQEQMSILELHSKWG-NRWSKIAQHLPGRTDNEIKNYWRTRVQK  123 (324)
Q Consensus        72 p~ikkg~WT~EED~~Ll~lv~~~G-~kWs~IA~~lpgRT~~qcknRW~~~lkk  123 (324)
                      +.+.+++||+|||++|+++|.+|| ++|.+||++|+|||+.|||+||.++|..
T Consensus         4 ~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~   56 (60)
T 1x41_A            4 GSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSG   56 (60)
T ss_dssp             CCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTC
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccC
Confidence            568899999999999999999999 7999999999999999999999987753

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A

Probab=99.57  E-value=7.6e-16  Score=110.63  Aligned_cols=50  Identities=28%  Similarity=0.486  Sum_probs=46.9

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhCC-CCCcccccceeecccc
Q 020603           22 RRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGL-KRTGKSCRLRWLNYLK   71 (324)
Q Consensus        22 kkg~WT~EED~~L~~lV~k~G~~~W~~IA~~l~~-~Rt~~QCr~Rw~n~L~   71 (324)
                      ++|+||+|||++|+++|.+||.++|..||+.|++ +|++.||++||.++++
T Consensus         1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k   51 (53)
T 1w0t_A            1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK   51 (53)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence            5899999999999999999998899999999986 6999999999999875

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.57  E-value=6.3e-16  Score=118.41  Aligned_cols=62  Identities=27%  Similarity=0.370  Sum_probs=56.8

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCC-----CChHHHHHHhCCCCCcccccceeeccccCCCcCCCC
Q 020603           17 DSDQLRRGPWTLEEDTLLIQYISRHSE-----GRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNL   79 (324)
Q Consensus        17 ~~~~lkkg~WT~EED~~L~~lV~k~G~-----~~W~~IA~~l~~~Rt~~QCr~Rw~n~L~p~ikkg~W   79 (324)
                      .+|.+++++||+|||++|+++|.+||.     .+|.+||+.|+ +||..||+.||+++|.+.++.|..
T Consensus         2 s~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~-~Rt~~qcr~r~~~~l~~~~k~g~~   68 (75)
T 2yum_A            2 SSGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELG-NRTAKQVASQVQKYFIKLTKAGIP   68 (75)
T ss_dssp             CCCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHS-SSCHHHHHHHHHHHHGGGSTTCSC
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhcCCC
Confidence            368899999999999999999999995     68999999999 999999999999999988777643

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}

Probab=99.57  E-value=1.2e-15  Score=111.88  Aligned_cols=53  Identities=26%  Similarity=0.420  Sum_probs=48.7

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhCCCCCcccccceeeccc
Q 020603           18 SDQLRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYL   70 (324)
Q Consensus        18 ~~~lkkg~WT~EED~~L~~lV~k~G~~~W~~IA~~l~~~Rt~~QCr~Rw~n~L   70 (324)
                      ...+.+++||+|||++|+++|++||.++|..||+.|+.+|+++|||+||.+++
T Consensus         4 ~~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~   56 (58)
T 2elk_A            4 GSSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY   56 (58)
T ss_dssp             CCCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence            34577999999999999999999998899999999987899999999999875

>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A

Probab=99.55  E-value=3.3e-15  Score=111.79  Aligned_cols=51  Identities=29%  Similarity=0.476  Sum_probs=46.3

Q ss_pred             CcCCCCCHHHHHHHHHHHhhcC-CChHHHHhhCC--CCCHHHHHHHHHHHHHHH
Q 020603           74 VKRGNLTPQEQMSILELHSKWG-NRWSKIAQHLP--GRTDNEIKNYWRTRVQKQ  124 (324)
Q Consensus        74 ikkg~WT~EED~~Ll~lv~~~G-~kWs~IA~~lp--gRT~~qcknRW~~~lkk~  124 (324)
                      .++++||+|||++|+++|.+|| ++|..||+.++  |||+.|||+||++++++.
T Consensus         9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~g   62 (64)
T 3sjm_A            9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLG   62 (64)
T ss_dssp             -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTT
T ss_pred             CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccC
Confidence            4789999999999999999999 58999999865  999999999999988763

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.54  E-value=3.2e-15  Score=114.48  Aligned_cols=57  Identities=25%  Similarity=0.303  Sum_probs=52.4

Q ss_pred             cCCCcCCCCCHHHHHHHHHHHhhcC------CChHHHHhhCCCCCHHHHHHHHHHHHHHHHHh
Q 020603           71 KPDVKRGNLTPQEQMSILELHSKWG------NRWSKIAQHLPGRTDNEIKNYWRTRVQKQARH  127 (324)
Q Consensus        71 ~p~ikkg~WT~EED~~Ll~lv~~~G------~kWs~IA~~lpgRT~~qcknRW~~~lkk~~r~  127 (324)
                      +|.+++++||+|||++|+++|.+||      ++|.+||++|+|||+.||++||+++|++.++.
T Consensus         3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~   65 (75)
T 2yum_A            3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKA   65 (75)
T ss_dssp             CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTT
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhc
Confidence            4788999999999999999999999      78999999999999999999999988875544

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.54  E-value=1.9e-15  Score=115.08  Aligned_cols=58  Identities=28%  Similarity=0.389  Sum_probs=54.4

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhCCCCCcccccceeeccccCCCcC
Q 020603           17 DSDQLRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKR   76 (324)
Q Consensus        17 ~~~~lkkg~WT~EED~~L~~lV~k~G~~~W~~IA~~l~~~Rt~~QCr~Rw~n~L~p~ikk   76 (324)
                      ..|.+++++||+|||++|+++|++||. +|..||+.|+ +||..||+.||.++|.+.++.
T Consensus         3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~~~-~Rt~~q~k~r~~~~l~~~~~~   60 (72)
T 2cu7_A            3 SGSSGYSVKWTIEEKELFEQGLAKFGR-RWTKISKLIG-SRTVLQVKSYARQYFKNKVKC   60 (72)
T ss_dssp             CCCSSCCCCCCHHHHHHHHHHHHHTCS-CHHHHHHHHS-SSCHHHHHHHHHHHHHHHSCS
T ss_pred             CCCCcCCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcC-CCCHHHHHHHHHHHHHHHHhc
Confidence            578999999999999999999999998 9999999999 999999999999999876665

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}

Probab=99.53  E-value=1.2e-14  Score=106.56  Aligned_cols=50  Identities=18%  Similarity=0.343  Sum_probs=46.1

Q ss_pred             CCCcCCCCCHHHHHHHHHHHhhcC-CChHHHHhhCC-CCCHHHHHHHHHHHH
Q 020603           72 PDVKRGNLTPQEQMSILELHSKWG-NRWSKIAQHLP-GRTDNEIKNYWRTRV  121 (324)
Q Consensus        72 p~ikkg~WT~EED~~Ll~lv~~~G-~kWs~IA~~lp-gRT~~qcknRW~~~l  121 (324)
                      ..+.+++||+|||++|+++|.+|| ++|..||++|+ |||+.|||+||.+++
T Consensus         5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~   56 (58)
T 2elk_A            5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY   56 (58)
T ss_dssp             CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence            346688999999999999999999 89999999999 999999999998764

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=99.52  E-value=2.2e-15  Score=121.88  Aligned_cols=70  Identities=20%  Similarity=0.358  Sum_probs=64.5

Q ss_pred             CCCCccccccccccCCCCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhCCCCCcccccceeeccccCC
Q 020603            2 SSFSKSSTSSIYGENDSDQLRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPD   73 (324)
Q Consensus         2 ~~~s~~~~~s~~~~~~~~~lkkg~WT~EED~~L~~lV~k~G~~~W~~IA~~l~~~Rt~~QCr~Rw~n~L~p~   73 (324)
                      ..++..+|..+|.+..+|.+++|+||+|||++|+++|.+||. +|..||+.|+ ||+..||+.||..+|+..
T Consensus        35 ~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~-~W~~Ia~~l~-gRt~~~~k~rw~~~~~~~  104 (105)
T 1gv2_A           35 KGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGN-RWAEIAKLLP-GRTDNAIKNHWNSTMRRK  104 (105)
T ss_dssp             TTCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSS-CHHHHHTTCT-TCCHHHHHHHHHHHTC--
T ss_pred             cCCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCC-CHHHHHHHcC-CCCHHHHHHHHHHHHhcc
Confidence            457788999999999999999999999999999999999997 9999999999 999999999999988653

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}

Probab=99.51  E-value=6.6e-15  Score=113.06  Aligned_cols=64  Identities=19%  Similarity=0.184  Sum_probs=48.6

Q ss_pred             cccccccCCCCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhCCCCCcccccceeeccccCCCcC
Q 020603            9 TSSIYGENDSDQLRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKR   76 (324)
Q Consensus         9 ~~s~~~~~~~~~lkkg~WT~EED~~L~~lV~k~G~~~W~~IA~~l~~~Rt~~QCr~Rw~n~L~p~ikk   76 (324)
                      ...+|.+..+|.+++|+||+|||++|+++|++||. +|..||+.|  +|++.||+.||.. |....+.
T Consensus         9 ~~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~-kW~~IA~~l--gRt~~q~knRw~~-L~~~~~~   72 (73)
T 2llk_A            9 SGRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGN-DWATIGAAL--GRSASSVKDRCRL-MKDTCNT   72 (73)
T ss_dssp             ----------CCCCCCSSCHHHHHHHHHHHHHHSS-CHHHHHHHH--TSCHHHHHHHHHH-CSCCCSC
T ss_pred             cCcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCC-CHHHHHHHh--CCCHHHHHHHHHH-HHHHccC
Confidence            34578889999999999999999999999999998 699999999  7999999999974 5544443

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=99.50  E-value=2e-15  Score=122.91  Aligned_cols=70  Identities=26%  Similarity=0.432  Sum_probs=65.2

Q ss_pred             CCCCCccccccccccCCCCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhCCCCCcccccceeeccccC
Q 020603            1 MSSFSKSSTSSIYGENDSDQLRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKP   72 (324)
Q Consensus         1 m~~~s~~~~~s~~~~~~~~~lkkg~WT~EED~~L~~lV~k~G~~~W~~IA~~l~~~Rt~~QCr~Rw~n~L~p   72 (324)
                      |-.++..+|..+|.++.+|.+++|+||+|||++|+++|.+||. +|..||+.|+ +|+..||+.||..+++.
T Consensus        31 ~~~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~-~W~~Ia~~l~-gRt~~~~k~rw~~l~r~  100 (107)
T 2k9n_A           31 MITRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGP-KWNKISKFLK-NRSDNNIRNRWMMIARH  100 (107)
T ss_dssp             TTTSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCS-CHHHHHHHHS-SSCHHHHHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCc-CHHHHHHHCC-CCCHHHHHHHHHHHHhh
Confidence            3457888999999999999999999999999999999999997 8999999999 99999999999987764

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}

Probab=99.22  E-value=2.9e-15  Score=118.88  Aligned_cols=56  Identities=20%  Similarity=0.234  Sum_probs=52.7

Q ss_pred             cccCCCcCCCCCHHHHHHHHHHHhhcCCChHHHHhhCCCCCHHHHHHHHHHHHHHH
Q 020603           69 YLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQ  124 (324)
Q Consensus        69 ~L~p~ikkg~WT~EED~~Ll~lv~~~G~kWs~IA~~lpgRT~~qcknRW~~~lkk~  124 (324)
                      .+.|.+++++||+|||++|+++|.+||++|..||+.|+|||++||++||+.++++.
T Consensus         9 ~~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~   64 (89)
T 2ltp_A            9 SGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQ   64 (89)
Confidence            46788999999999999999999999999999999999999999999999988763

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=99.47  E-value=5.8e-15  Score=123.58  Aligned_cols=68  Identities=25%  Similarity=0.434  Sum_probs=64.1

Q ss_pred             CCCCccccccccccCCCCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhCCCCCcccccceeecccc
Q 020603            2 SSFSKSSTSSIYGENDSDQLRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLK   71 (324)
Q Consensus         2 ~~~s~~~~~s~~~~~~~~~lkkg~WT~EED~~L~~lV~k~G~~~W~~IA~~l~~~Rt~~QCr~Rw~n~L~   71 (324)
                      -.++..+|..+|.+..+|.+++|+||+|||++|+++|.+||. +|..||+.|+ +|+..||+.||..+++
T Consensus        41 ~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~-~W~~Ia~~l~-gRt~~~~k~rw~~l~~  108 (126)
T 3osg_A           41 PNRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGR-QWAIIAKFFP-GRTDIHIKNRWVTISN  108 (126)
T ss_dssp             TTCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCS-CHHHHHTTST-TCCHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCc-CHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence            457888999999999999999999999999999999999996 8999999999 9999999999998765

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A

Probab=99.45  E-value=5.6e-14  Score=110.35  Aligned_cols=69  Identities=22%  Similarity=0.446  Sum_probs=60.1

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCChHHHHHH----hCCCCCcccccceeeccc-----cCCCcCC-CCCHHHHHHHHHHHhh
Q 020603           24 GPWTLEEDTLLIQYISRHSEGRWNLLAKR----SGLKRTGKSCRLRWLNYL-----KPDVKRG-NLTPQEQMSILELHSK   93 (324)
Q Consensus        24 g~WT~EED~~L~~lV~k~G~~~W~~IA~~----l~~~Rt~~QCr~Rw~n~L-----~p~ikkg-~WT~EED~~Ll~lv~~   93 (324)
                      ++||+|||++|+++|++||.++|..|++.    |+ +||+.||++||+++|     .|.+++| +..++...+++.|+..
T Consensus         1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~-~RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a~   79 (83)
T 2ckx_A            1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNAD-HRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAY   79 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCT-TSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccC-CCCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHHH
Confidence            58999999999999999999999999996    77 999999999999988     5766665 5677777888888754

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3

Probab=99.45  E-value=3e-14  Score=116.49  Aligned_cols=78  Identities=27%  Similarity=0.554  Sum_probs=68.2

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHh----CCCCCcccccceeeccc-----cCCCcCCCCCHHHHHH-
Q 020603           17 DSDQLRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRS----GLKRTGKSCRLRWLNYL-----KPDVKRGNLTPQEQMS-   86 (324)
Q Consensus        17 ~~~~lkkg~WT~EED~~L~~lV~k~G~~~W~~IA~~l----~~~Rt~~QCr~Rw~n~L-----~p~ikkg~WT~EED~~-   86 (324)
                      .....++++||+|||++|+++|++||.++|..|++.+    + +||..+|++||++++     .|.+++|.-+++|-.. 
T Consensus         7 ~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~-~RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l~r   85 (105)
T 2aje_A            7 DPQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDAD-HRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLNR   85 (105)
T ss_dssp             --CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTT-CCCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHHHH
T ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccC-CCCHHHHHHHHHHHHhhccCCcccccCCCCCHHHHHH
Confidence            4567899999999999999999999999999999965    5 899999999999999     6899999988888665 


Q ss_pred             HHHHHhhcC
Q 020603           87 ILELHSKWG   95 (324)
Q Consensus        87 Ll~lv~~~G   95 (324)
                      +++|+..+|
T Consensus        86 v~~~~~~~~   94 (105)
T 2aje_A           86 VLNAHGYWT   94 (105)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            888877655

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.39  E-value=2.4e-13  Score=104.31  Aligned_cols=51  Identities=16%  Similarity=0.283  Sum_probs=47.3

Q ss_pred             CCCcCCCCCHHHHHHHHHHHhhcC----CChHHHHhhCCCCCHHHHHHHHHHHHH
Q 020603           72 PDVKRGNLTPQEQMSILELHSKWG----NRWSKIAQHLPGRTDNEIKNYWRTRVQ  122 (324)
Q Consensus        72 p~ikkg~WT~EED~~Ll~lv~~~G----~kWs~IA~~lpgRT~~qcknRW~~~lk  122 (324)
                      +.+.+++||.|||++|++++.+||    ++|.+||++|||||..||++||+.+++
T Consensus        14 ~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~   68 (73)
T 2cqr_A           14 ARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVS   68 (73)
T ss_dssp             TTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred             cccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            456789999999999999999999    689999999999999999999998764

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=99.38  E-value=2.9e-13  Score=105.27  Aligned_cols=51  Identities=25%  Similarity=0.506  Sum_probs=47.7

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhCCCCCcccccceeecc
Q 020603           17 DSDQLRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNY   69 (324)
Q Consensus        17 ~~~~lkkg~WT~EED~~L~~lV~k~G~~~W~~IA~~l~~~Rt~~QCr~Rw~n~   69 (324)
                      .+....+++||+|||++|+++|++|| ++|.+||+.|+ +||..||+.||.++
T Consensus        12 ~~~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~v~-~RT~~qcr~r~~~~   62 (79)
T 2yus_A           12 SKGASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVG-SRTQDECILHFLRL   62 (79)
T ss_dssp             CCSSCCSCCCCHHHHHHHHHHHHHSS-SCHHHHHHHHS-SCCHHHHHHHHTTS
T ss_pred             ccccccCCCcCHHHHHHHHHHHHHhC-CCHHHHHHHcC-CCCHHHHHHHHHHh
Confidence            45567789999999999999999999 69999999999 99999999999998

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=99.37  E-value=3.8e-13  Score=104.59  Aligned_cols=48  Identities=23%  Similarity=0.361  Sum_probs=45.0

Q ss_pred             CCcCCCCCHHHHHHHHHHHhhcCCChHHHHhhCCCCCHHHHHHHHHHH
Q 020603           73 DVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTR  120 (324)
Q Consensus        73 ~ikkg~WT~EED~~Ll~lv~~~G~kWs~IA~~lpgRT~~qcknRW~~~  120 (324)
                      ...+++||+|||++|+++|.+||++|.+||++|++||+.||++||..+
T Consensus        15 ~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~   62 (79)
T 2yus_A           15 ASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL   62 (79)
T ss_dssp             SCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred             cccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence            456789999999999999999999999999999999999999999864

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}

Probab=99.01  E-value=1.1e-13  Score=109.73  Aligned_cols=55  Identities=25%  Similarity=0.441  Sum_probs=51.8

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhCCCCCcccccceeeccccC
Q 020603           16 NDSDQLRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKP   72 (324)
Q Consensus        16 ~~~~~lkkg~WT~EED~~L~~lV~k~G~~~W~~IA~~l~~~Rt~~QCr~Rw~n~L~p   72 (324)
                      ...+.+++|+||+|||++|+++|.+||. +|..||+.|+ +||..||+.||.++|..
T Consensus         9 ~~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~IA~~l~-gRt~~q~k~r~~~~lrk   63 (89)
T 2ltp_A            9 SGRENLYFQGWTEEEMGTAKKGLLEHGR-NWSAIARMVG-SKTVSQCKNFYFNYKKR   63 (89)
Confidence            3678999999999999999999999998 8999999999 99999999999998864

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.32  E-value=3.6e-13  Score=103.37  Aligned_cols=57  Identities=16%  Similarity=0.364  Sum_probs=51.4

Q ss_pred             ccCCCCCCCCCCCCHHHHHHHHHHHHHhCC---CChHHHHHHhCCCCCcccccceeecccc
Q 020603           14 GENDSDQLRRGPWTLEEDTLLIQYISRHSE---GRWNLLAKRSGLKRTGKSCRLRWLNYLK   71 (324)
Q Consensus        14 ~~~~~~~lkkg~WT~EED~~L~~lV~k~G~---~~W~~IA~~l~~~Rt~~QCr~Rw~n~L~   71 (324)
                      +..+.+...+++||+|||++|+++|.+||.   .+|.+||+.|| |||.+||+.||.+++.
T Consensus         9 ~~~~~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vp-GRT~~qcr~Ry~~L~~   68 (73)
T 2cqr_A            9 LRKERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVP-SKSKEDCIARYKLLVS   68 (73)
T ss_dssp             CCCCTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCS-SSCHHHHHHHHHHHHS
T ss_pred             ccccccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence            445778899999999999999999999993   48999999999 9999999999998764

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A

Probab=99.29  E-value=3.6e-12  Score=100.03  Aligned_cols=48  Identities=23%  Similarity=0.445  Sum_probs=44.7

Q ss_pred             CCCCHHHHHHHHHHHhhcCC-ChHHHHhh----CCCCCHHHHHHHHHHHHHHH
Q 020603           77 GNLTPQEQMSILELHSKWGN-RWSKIAQH----LPGRTDNEIKNYWRTRVQKQ  124 (324)
Q Consensus        77 g~WT~EED~~Ll~lv~~~G~-kWs~IA~~----lpgRT~~qcknRW~~~lkk~  124 (324)
                      ++||+|||++|+++|++||. +|+.|++.    |+|||+.+||+||+++++..
T Consensus         1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~   53 (83)
T 2ckx_A            1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA   53 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhc
Confidence            47999999999999999996 99999996    89999999999999999754

>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1

Probab=99.27  E-value=5.1e-12  Score=93.80  Aligned_cols=49  Identities=18%  Similarity=0.342  Sum_probs=45.4

Q ss_pred             cCCCCCHHHHHHHHHHHhhcCCChHHHH---hhCCCCCHHHHHHHHHHHHHH
Q 020603           75 KRGNLTPQEQMSILELHSKWGNRWSKIA---QHLPGRTDNEIKNYWRTRVQK  123 (324)
Q Consensus        75 kkg~WT~EED~~Ll~lv~~~G~kWs~IA---~~lpgRT~~qcknRW~~~lkk  123 (324)
                      ++.+||+|||+.|++.|++||.+|..|+   .++++||..++|+||+++.+.
T Consensus         7 ~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~   58 (62)
T 1x58_A            7 GRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISG   58 (62)
T ss_dssp             CSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTC
T ss_pred             CCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhc
Confidence            6789999999999999999999999999   467999999999999998764

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}

Probab=99.24  E-value=6.5e-12  Score=105.01  Aligned_cols=54  Identities=24%  Similarity=0.423  Sum_probs=49.8

Q ss_pred             ccCCCcCCCCCHHHHHHHHHHHhhcCC-ChHHHHhh----CCCCCHHHHHHHHHHHHHH
Q 020603           70 LKPDVKRGNLTPQEQMSILELHSKWGN-RWSKIAQH----LPGRTDNEIKNYWRTRVQK  123 (324)
Q Consensus        70 L~p~ikkg~WT~EED~~Ll~lv~~~G~-kWs~IA~~----lpgRT~~qcknRW~~~lkk  123 (324)
                      +.+..++++||+|||+.|+++|++||. +|+.|++.    |+|||+.+||+||+++++.
T Consensus        11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~   69 (121)
T 2juh_A           11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHT   69 (121)
T ss_dssp             CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHH
T ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence            556778999999999999999999996 99999997    4899999999999999984

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3

Probab=99.24  E-value=1e-11  Score=101.54  Aligned_cols=52  Identities=23%  Similarity=0.401  Sum_probs=47.5

Q ss_pred             CCCcCCCCCHHHHHHHHHHHhhcCC-ChHHHHhhC----CCCCHHHHHHHHHHHHHH
Q 020603           72 PDVKRGNLTPQEQMSILELHSKWGN-RWSKIAQHL----PGRTDNEIKNYWRTRVQK  123 (324)
Q Consensus        72 p~ikkg~WT~EED~~Ll~lv~~~G~-kWs~IA~~l----pgRT~~qcknRW~~~lkk  123 (324)
                      +..++++||+|||+.|+++|++||. +|+.|++.+    +|||+.+||+||+++++.
T Consensus         9 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~   65 (105)
T 2aje_A            9 QRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHT   65 (105)
T ss_dssp             CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHT
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence            4567899999999999999999996 999999965    899999999999999874

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A

Probab=99.22  E-value=3.7e-12  Score=117.14  Aligned_cols=55  Identities=25%  Similarity=0.456  Sum_probs=48.4

Q ss_pred             CCCcCCCCCHHHHHHHHHHHhhcCCC------hHHHHhhCCCCCHHHHHHHHHHHHHHHHH
Q 020603           72 PDVKRGNLTPQEQMSILELHSKWGNR------WSKIAQHLPGRTDNEIKNYWRTRVQKQAR  126 (324)
Q Consensus        72 p~ikkg~WT~EED~~Ll~lv~~~G~k------Ws~IA~~lpgRT~~qcknRW~~~lkk~~r  126 (324)
                      +.+++++||+|||++|+++|++||++      |.+||++|||||++|||+||+.+|++.+.
T Consensus         4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln   64 (246)
T 1ign_A            4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLE   64 (246)
T ss_dssp             ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCC
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcc
Confidence            35688999999999999999999975      99999999999999999999999998654

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3

Probab=99.22  E-value=2e-11  Score=97.69  Aligned_cols=50  Identities=20%  Similarity=0.410  Sum_probs=45.6

Q ss_pred             cCCCCCHHHHHHHHHHHhhcC----CChHHHHhhCCCCCHHHHHHHHHHHHHHH
Q 020603           75 KRGNLTPQEQMSILELHSKWG----NRWSKIAQHLPGRTDNEIKNYWRTRVQKQ  124 (324)
Q Consensus        75 kkg~WT~EED~~Ll~lv~~~G----~kWs~IA~~lpgRT~~qcknRW~~~lkk~  124 (324)
                      .+++||.|||++|++++.+||    ++|.+||+.|||||.++|++||+.++...
T Consensus         7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv   60 (93)
T 2cjj_A            7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDI   60 (93)
T ss_dssp             -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence            467999999999999999996    67999999999999999999999988764

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}

Probab=99.17  E-value=3.2e-11  Score=100.97  Aligned_cols=53  Identities=25%  Similarity=0.396  Sum_probs=47.6

Q ss_pred             CCCcCCCCCHHHHHHHHHHHhhcCC-ChHHHHhh----CCCCCHHHHHHHHHHHHHHH
Q 020603           72 PDVKRGNLTPQEQMSILELHSKWGN-RWSKIAQH----LPGRTDNEIKNYWRTRVQKQ  124 (324)
Q Consensus        72 p~ikkg~WT~EED~~Ll~lv~~~G~-kWs~IA~~----lpgRT~~qcknRW~~~lkk~  124 (324)
                      ...++++||+|||+.|+++|++||. +|+.|++.    |+|||+.+||+||+++++..
T Consensus        27 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~   84 (122)
T 2roh_A           27 QRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTA   84 (122)
T ss_dssp             CCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence            3457899999999999999999996 99999996    48999999999999999653

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3

Probab=99.03  E-value=5.8e-11  Score=95.01  Aligned_cols=48  Identities=17%  Similarity=0.360  Sum_probs=43.3

Q ss_pred             CCCCCCHHHHHHHHHHHHHhC---CCChHHHHHHhCCCCCcccccceeeccc
Q 020603           22 RRGPWTLEEDTLLIQYISRHS---EGRWNLLAKRSGLKRTGKSCRLRWLNYL   70 (324)
Q Consensus        22 kkg~WT~EED~~L~~lV~k~G---~~~W~~IA~~l~~~Rt~~QCr~Rw~n~L   70 (324)
                      .+++||.|||++|.+++.+||   ..+|.+||+.|| |||..||+.||.+++
T Consensus         7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vp-GRT~~q~k~ry~~l~   57 (93)
T 2cjj_A            7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVE-GRTPEEVKKHYEILV   57 (93)
T ss_dssp             -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHST-TCCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence            468999999999999999997   347999999999 999999999998864

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.00  E-value=5.7e-10  Score=82.31  Aligned_cols=46  Identities=13%  Similarity=0.070  Sum_probs=43.1

Q ss_pred             cCCCCCHHHHHHHHHHHhhcCCChHHHHhhCCCCCHHHHHHHHHHH
Q 020603           75 KRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTR  120 (324)
Q Consensus        75 kkg~WT~EED~~Ll~lv~~~G~kWs~IA~~lpgRT~~qcknRW~~~  120 (324)
                      ..++||+||++++++++.+||.+|..||..|++||..||..+|...
T Consensus        11 ~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~   56 (61)
T 2eqr_A           11 FMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLT   56 (61)
T ss_dssp             CCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence            4578999999999999999999999999999999999999999764

>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}

Probab=98.99  E-value=6e-10  Score=89.08  Aligned_cols=66  Identities=17%  Similarity=0.215  Sum_probs=59.6

Q ss_pred             ccccceeeccccCCCcCCCCCHHHHHHHHHHHhhcCCChHHHHhhC-----CCCCHHHHHHHHHHHHHHHHHhcC
Q 020603           60 KSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHL-----PGRTDNEIKNYWRTRVQKQARHLK  129 (324)
Q Consensus        60 ~QCr~Rw~n~L~p~ikkg~WT~EED~~Ll~lv~~~G~kWs~IA~~l-----pgRT~~qcknRW~~~lkk~~r~~~  129 (324)
                      .=+.++|.++|.+    ++||.||+..|++|+++||.+|..|+..+     ++||..++|+||..+.++.++..+
T Consensus        18 ~yt~eeY~~~L~~----~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r~   88 (93)
T 3hm5_A           18 VYSEQEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVRA   88 (93)
T ss_dssp             CCCHHHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHTC
T ss_pred             ccCHHHHHHHcCC----CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            4578899999976    89999999999999999999999999999     589999999999999988776653

>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1

Probab=98.85  E-value=7.3e-10  Score=82.20  Aligned_cols=50  Identities=16%  Similarity=0.211  Sum_probs=44.8

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCChHHHHH---HhCCCCCcccccceeecccc
Q 020603           20 QLRRGPWTLEEDTLLIQYISRHSEGRWNLLAK---RSGLKRTGKSCRLRWLNYLK   71 (324)
Q Consensus        20 ~lkkg~WT~EED~~L~~lV~k~G~~~W~~IA~---~l~~~Rt~~QCr~Rw~n~L~   71 (324)
                      ..++++||+|||+.|+++|++||. +|..|+.   ++. +||...+++||++..+
T Consensus         5 ~~~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~-~RT~VdLKdk~r~L~k   57 (62)
T 1x58_A            5 SSGRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQK-GRRAVDLAHKYHRLIS   57 (62)
T ss_dssp             CCCSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCT-TCCHHHHHHHHHHHHT
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCcc-CcccchHHHHHHHHHh
Confidence            348899999999999999999998 9999995   455 8999999999998764

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.84  E-value=3.8e-09  Score=80.69  Aligned_cols=50  Identities=20%  Similarity=0.324  Sum_probs=44.6

Q ss_pred             CCcCCCCCHHHHHHHHHHHhhcC----CChHHHHhhCCCCCHHHHHHHHHHHHHH
Q 020603           73 DVKRGNLTPQEQMSILELHSKWG----NRWSKIAQHLPGRTDNEIKNYWRTRVQK  123 (324)
Q Consensus        73 ~ikkg~WT~EED~~Ll~lv~~~G----~kWs~IA~~lpgRT~~qcknRW~~~lkk  123 (324)
                      ..+.+.||.|||++|.+++.+|+    ++|.+||+.| |||..+|++||+.+++.
T Consensus         5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d   58 (72)
T 2cqq_A            5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDS   58 (72)
T ss_dssp             CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHS
T ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHh
Confidence            34578999999999999999997    5699999998 99999999999987554

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*

Probab=98.82  E-value=4.5e-09  Score=96.01  Aligned_cols=49  Identities=16%  Similarity=0.337  Sum_probs=45.4

Q ss_pred             cCCCCCHHHHHHHHHHHhhcCCChHHHHhhCCCCCHHHHHHHHHHHHHH
Q 020603           75 KRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQK  123 (324)
Q Consensus        75 kkg~WT~EED~~Ll~lv~~~G~kWs~IA~~lpgRT~~qcknRW~~~lkk  123 (324)
                      ..++||+||++++++++.+||++|..||+.+++||..|||++|+...++
T Consensus       132 ~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKR  180 (235)
T 2iw5_B          132 CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR  180 (235)
T ss_dssp             CCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred             cCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            4579999999999999999999999999999999999999999976654

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.81  E-value=2.8e-09  Score=78.56  Aligned_cols=51  Identities=18%  Similarity=0.324  Sum_probs=45.6

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhCCCCCcccccceeecc
Q 020603           17 DSDQLRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNY   69 (324)
Q Consensus        17 ~~~~lkkg~WT~EED~~L~~lV~k~G~~~W~~IA~~l~~~Rt~~QCr~Rw~n~   69 (324)
                      ++..-..++||+||++++.+++.+||. +|..||..|+ +|+..||+.+|...
T Consensus         6 ~~~r~~~~~WT~eE~~~F~~~~~~~gk-~w~~Ia~~l~-~rt~~~~v~~Yy~~   56 (61)
T 2eqr_A            6 SGDRQFMNVWTDHEKEIFKDKFIQHPK-NFGLIASYLE-RKSVPDCVLYYYLT   56 (61)
T ss_dssp             CCCCSCCCSCCHHHHHHHHHHHHHSTT-CHHHHHHHCT-TSCHHHHHHHHHHH
T ss_pred             ccccccCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcC-CCCHHHHHHHHHHh
Confidence            445567799999999999999999996 9999999999 99999999998654

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.62  E-value=1.2e-08  Score=77.89  Aligned_cols=50  Identities=18%  Similarity=0.286  Sum_probs=43.8

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCC---CChHHHHHHhCCCCCcccccceeecccc
Q 020603           20 QLRRGPWTLEEDTLLIQYISRHSE---GRWNLLAKRSGLKRTGKSCRLRWLNYLK   71 (324)
Q Consensus        20 ~lkkg~WT~EED~~L~~lV~k~G~---~~W~~IA~~l~~~Rt~~QCr~Rw~n~L~   71 (324)
                      ..+.+.||.|||++|.+++.+|+.   .+|.+||+.+  ||+..||+.||..++.
T Consensus         5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l--gRt~~eV~~~y~~L~~   57 (72)
T 2cqq_A            5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL--GRSVTDVTTKAKQLKD   57 (72)
T ss_dssp             CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH--TSCHHHHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh--CCCHHHHHHHHHHHHH
Confidence            456789999999999999999984   4799999998  4999999999987654

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=98.57  E-value=3e-08  Score=99.44  Aligned_cols=44  Identities=18%  Similarity=0.378  Sum_probs=41.5

Q ss_pred             CCCCHHHHHHHHHHHhhcCCChHHHHhhCCCCCHHHHHHHHHHH
Q 020603           77 GNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTR  120 (324)
Q Consensus        77 g~WT~EED~~Ll~lv~~~G~kWs~IA~~lpgRT~~qcknRW~~~  120 (324)
                      ..||+||-+++++++.+||.+|..||+.+..||..|||++|...
T Consensus       381 ~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~  424 (482)
T 2xag_B          381 ARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNY  424 (482)
T ss_dssp             SCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHH
Confidence            47999999999999999999999999999999999999999753

>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.53  E-value=7.5e-08  Score=73.70  Aligned_cols=47  Identities=13%  Similarity=0.201  Sum_probs=42.7

Q ss_pred             CCCCCHHHHHHHHHHHhhcCC----ChHHHHhhCCCCCHHHHHHHHHHHHH
Q 020603           76 RGNLTPQEQMSILELHSKWGN----RWSKIAQHLPGRTDNEIKNYWRTRVQ  122 (324)
Q Consensus        76 kg~WT~EED~~Ll~lv~~~G~----kWs~IA~~lpgRT~~qcknRW~~~lk  122 (324)
                      ...||.+|+++|.+++..|+.    +|.+||..++|||..+|+.||..+++
T Consensus         8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~   58 (73)
T 1wgx_A            8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPR   58 (73)
T ss_dssp             SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSS
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence            468999999999999999984    69999999999999999999998644

>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3

Probab=98.51  E-value=2.9e-08  Score=72.92  Aligned_cols=48  Identities=21%  Similarity=0.429  Sum_probs=43.5

Q ss_pred             CCCCCHHHHHHHHHHHHHh--------CCCChHHHHH-HhCCCCCcccccceeecccc
Q 020603           23 RGPWTLEEDTLLIQYISRH--------SEGRWNLLAK-RSGLKRTGKSCRLRWLNYLK   71 (324)
Q Consensus        23 kg~WT~EED~~L~~lV~k~--------G~~~W~~IA~-~l~~~Rt~~QCr~Rw~n~L~   71 (324)
                      |.+||+|||+.|++.|.+|        |..-|+.+++ .++ ++|..+||+||.++|.
T Consensus         2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~-~HtwqSwRdRy~k~l~   58 (59)
T 1fex_A            2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLT-QHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSS-SCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCC-CCCHHHHHHHHHHHcc
Confidence            6799999999999999999        5456999999 788 9999999999999875

>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.50  E-value=4.7e-08  Score=74.84  Aligned_cols=49  Identities=18%  Similarity=0.388  Sum_probs=44.0

Q ss_pred             CCCCCHHHHHHHHHHHHHhCC---CChHHHHHHhCCCCCcccccceeeccccC
Q 020603           23 RGPWTLEEDTLLIQYISRHSE---GRWNLLAKRSGLKRTGKSCRLRWLNYLKP   72 (324)
Q Consensus        23 kg~WT~EED~~L~~lV~k~G~---~~W~~IA~~l~~~Rt~~QCr~Rw~n~L~p   72 (324)
                      ...||.+|+++|.+++..|+.   ++|.+||..|| +|+..+|+.||..++.-
T Consensus         8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~-gKT~eE~~~hY~~l~~~   59 (73)
T 1wgx_A            8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVG-SRSPEECQRKYMENPRG   59 (73)
T ss_dssp             SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTT-TSCHHHHHHHHHHSSSS
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcC-CCCHHHHHHHHHHHHhc
Confidence            467999999999999999985   47999999999 89999999999887653

>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3

Probab=98.41  E-value=2.1e-07  Score=68.36  Aligned_cols=47  Identities=19%  Similarity=0.385  Sum_probs=41.8

Q ss_pred             CCCCCHHHHHHHHHHHhhc--------CCC-hHHHHh-hCCCCCHHHHHHHHHHHHH
Q 020603           76 RGNLTPQEQMSILELHSKW--------GNR-WSKIAQ-HLPGRTDNEIKNYWRTRVQ  122 (324)
Q Consensus        76 kg~WT~EED~~Ll~lv~~~--------G~k-Ws~IA~-~lpgRT~~qcknRW~~~lk  122 (324)
                      +.+||+|||.+|++.|.+|        |++ |.++++ .++++|-.+||+||...|+
T Consensus         2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~   58 (59)
T 1fex_A            2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence            4689999999999999999        433 999999 8999999999999987653

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*

Probab=98.40  E-value=1.8e-07  Score=85.51  Aligned_cols=53  Identities=21%  Similarity=0.342  Sum_probs=47.2

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhCCCCCcccccceeecccc
Q 020603           17 DSDQLRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLK   71 (324)
Q Consensus        17 ~~~~lkkg~WT~EED~~L~~lV~k~G~~~W~~IA~~l~~~Rt~~QCr~Rw~n~L~   71 (324)
                      .......++||+||++++++++.+||. +|..||+.|+ +||..||+.+|.++.+
T Consensus       127 e~~~k~s~~WTeEE~~lFleAl~kYGK-DW~~IAk~Vg-TKT~~QcKnfY~~~kK  179 (235)
T 2iw5_B          127 EVIQKCNARWTTEEQLLAVQAIRKYGR-DFQAISDVIG-NKSVVQVKNFFVNYRR  179 (235)
T ss_dssp             CCCCCCCSSCCHHHHHHHHHHHHHHSS-CHHHHHHHHS-SCCHHHHHHHHHHTTT
T ss_pred             CCCCccCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence            344456789999999999999999996 9999999999 9999999999988764

>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A

Probab=98.14  E-value=5.2e-06  Score=79.07  Aligned_cols=104  Identities=18%  Similarity=0.173  Sum_probs=82.4

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCChHHHHHHhCCCCCcccccc-------eeecc--------------------------
Q 020603           23 RGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRL-------RWLNY--------------------------   69 (324)
Q Consensus        23 kg~WT~EED~~L~~lV~k~G~~~W~~IA~~l~~~Rt~~QCr~-------Rw~n~--------------------------   69 (324)
                      -+.||..|...++.++.+||..+|..||..|+ +++...++.       ||..+                          
T Consensus       110 F~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~-~Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~~  188 (304)
T 1ofc_X          110 FTAWTKRDFNQFIKANEKYGRDDIDNIAKDVE-GKTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKA  188 (304)
T ss_dssp             CTTCCHHHHHHHHHHHHHHCTTCHHHHTTSST-TCCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hcccCHHHHHHHHHHHHHhCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35699999999999999999999999999998 888877652       22110                          


Q ss_pred             --------------c---cCCCcCCCCCHHHHHHHHHHHhhcCC----ChHHHHh------------hCCCCCHHHHHHH
Q 020603           70 --------------L---KPDVKRGNLTPQEQMSILELHSKWGN----RWSKIAQ------------HLPGRTDNEIKNY  116 (324)
Q Consensus        70 --------------L---~p~ikkg~WT~EED~~Ll~lv~~~G~----kWs~IA~------------~lpgRT~~qcknR  116 (324)
                                    |   -+..++..||++||..||-++.+||-    .|..|..            ++..||+.+|..|
T Consensus       189 l~~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rR  268 (304)
T 1ofc_X          189 LDQKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRR  268 (304)
T ss_dssp             HHHHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHH
T ss_pred             HHHHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHH
Confidence                          0   01224467999999999999999994    5999973            4468999999999


Q ss_pred             HHHHHHHHHHh
Q 020603          117 WRTRVQKQARH  127 (324)
Q Consensus       117 W~~~lkk~~r~  127 (324)
                      .+.+++-..+.
T Consensus       269 c~tLi~~iekE  279 (304)
T 1ofc_X          269 CNTLITLIERE  279 (304)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999875443

>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.13  E-value=5.1e-06  Score=61.46  Aligned_cols=48  Identities=15%  Similarity=0.268  Sum_probs=44.1

Q ss_pred             CCCcCCCCCHHHHHHHHHHHhhcCCChHHHHh-hCCCCCHHHHHHHHHH
Q 020603           72 PDVKRGNLTPQEQMSILELHSKWGNRWSKIAQ-HLPGRTDNEIKNYWRT  119 (324)
Q Consensus        72 p~ikkg~WT~EED~~Ll~lv~~~G~kWs~IA~-~lpgRT~~qcknRW~~  119 (324)
                      |.++...||+||-++..+++.+||.+|..|++ .|++||..+|...|..
T Consensus         5 p~~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~   53 (63)
T 2yqk_A            5 SSGIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYY   53 (63)
T ss_dssp             CCCCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHHH
T ss_pred             CCcCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHhc
Confidence            56777899999999999999999999999999 5899999999988864

>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3

Probab=98.09  E-value=7.6e-06  Score=64.79  Aligned_cols=47  Identities=26%  Similarity=0.299  Sum_probs=43.7

Q ss_pred             CCCHHHHHHHHHHHhhcCC---ChHHHHhhCCCCCHHHHHHHHHHHHHHH
Q 020603           78 NLTPQEQMSILELHSKWGN---RWSKIAQHLPGRTDNEIKNYWRTRVQKQ  124 (324)
Q Consensus        78 ~WT~EED~~Ll~lv~~~G~---kWs~IA~~lpgRT~~qcknRW~~~lkk~  124 (324)
                      -||.|||..||..+++-|.   .|..||+.|.+|+.+||++||+.+++-.
T Consensus        35 lWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~Lf   84 (95)
T 1ug2_A           35 LWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLF   84 (95)
T ss_dssp             SSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHH
T ss_pred             EeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence            5999999999999999986   7999999999999999999999988763

>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}

Probab=97.97  E-value=1.7e-06  Score=66.04  Aligned_cols=43  Identities=28%  Similarity=0.360  Sum_probs=38.9

Q ss_pred             CCCCCHHHHHHHHHHHhhcCC----ChHHHHhhCCCCCHHHHHHHHH
Q 020603           76 RGNLTPQEQMSILELHSKWGN----RWSKIAQHLPGRTDNEIKNYWR  118 (324)
Q Consensus        76 kg~WT~EED~~Ll~lv~~~G~----kWs~IA~~lpgRT~~qcknRW~  118 (324)
                      .+.||.+|+++|..+..+|+.    +|.+||..+||||..+|+.+|.
T Consensus        20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~   66 (74)
T 4eef_G           20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE   66 (74)
T ss_dssp             --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence            457999999999999999985    6999999999999999999985

>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}

Probab=97.21  E-value=1e-06  Score=66.26  Aligned_cols=45  Identities=18%  Similarity=0.257  Sum_probs=42.1

Q ss_pred             CCCHHHHHHHHHHHhhcCC---ChHHHHhhCCCCCHHHHHHHHHHHHHH
Q 020603           78 NLTPQEQMSILELHSKWGN---RWSKIAQHLPGRTDNEIKNYWRTRVQK  123 (324)
Q Consensus        78 ~WT~EED~~Ll~lv~~~G~---kWs~IA~~lpgRT~~qcknRW~~~lkk  123 (324)
                      -||.|||..|+..+++-|.   .|..||+.| +|+++||.+||+.+++-
T Consensus        16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~L   63 (70)
T 2lr8_A           16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMKL   63 (70)
Confidence            5999999999999999996   799999999 99999999999998765

>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*

Probab=97.96  E-value=2.3e-05  Score=62.44  Aligned_cols=60  Identities=18%  Similarity=0.267  Sum_probs=51.2

Q ss_pred             eeeccccCCCcCCCCCHHHHHHHHHHHhhcCCChHHHHhhCC-----CCCHHHHHHHHHHHHHHHHHhc
Q 020603           65 RWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLP-----GRTDNEIKNYWRTRVQKQARHL  128 (324)
Q Consensus        65 Rw~n~L~p~ikkg~WT~EED~~Ll~lv~~~G~kWs~IA~~lp-----gRT~~qcknRW~~~lkk~~r~~  128 (324)
                      .|..+|.    ...||.||...|++|+++|+-+|..|+..+.     .||-.++|.||..+.++.++..
T Consensus        23 EY~~~L~----~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~r   87 (93)
T 4iej_A           23 EYQLYLH----DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR   87 (93)
T ss_dssp             HHHHHTC----BTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHhC----CCCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence            4445554    3689999999999999999999999999874     7999999999999888876654

>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}

Probab=97.96  E-value=8.4e-07  Score=67.77  Aligned_cols=44  Identities=20%  Similarity=0.401  Sum_probs=39.4

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCC---ChHHHHHHhCCCCCcccccceee
Q 020603           23 RGPWTLEEDTLLIQYISRHSEG---RWNLLAKRSGLKRTGKSCRLRWL   67 (324)
Q Consensus        23 kg~WT~EED~~L~~lV~k~G~~---~W~~IA~~l~~~Rt~~QCr~Rw~   67 (324)
                      ...||.+|+++|.+++.+|+.+   +|.+||..|| ||+..+|+.+|.
T Consensus        20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~Vp-GKT~eEVk~hY~   66 (74)
T 4eef_G           20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVK-GRTPEEVKKHYE   66 (74)
T ss_dssp             --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSC-SSCHHHHHGGGC
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcC-CCCHHHHHHHHH
Confidence            4579999999999999999864   7999999999 999999999985

>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.75  E-value=2.1e-05  Score=58.12  Aligned_cols=50  Identities=8%  Similarity=0.043  Sum_probs=44.6

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHH-HhCCCCCcccccceeec
Q 020603           17 DSDQLRRGPWTLEEDTLLIQYISRHSEGRWNLLAK-RSGLKRTGKSCRLRWLN   68 (324)
Q Consensus        17 ~~~~lkkg~WT~EED~~L~~lV~k~G~~~W~~IA~-~l~~~Rt~~QCr~Rw~n   68 (324)
                      ..|.+....||+||-++..+++.+||. +|..|++ .|+ +|+..||...|..
T Consensus         3 ~~p~~~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~-~Kt~~~~v~fYY~   53 (63)
T 2yqk_A            3 SGSSGIEKCWTEDEVKRFVKGLRQYGK-NFFRIRKELLP-NKETGELITFYYY   53 (63)
T ss_dssp             CCCCCCCCSCCHHHHHHHHHHHHHTCS-CHHHHHHHSCT-TSCHHHHHHHHHH
T ss_pred             CCCCcCCCCcCHHHHHHHHHHHHHhCc-cHHHHHHHHcC-CCcHHHHHHHHhc
Confidence            457788899999999999999999997 9999999 588 9999999887643

>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A

Probab=97.71  E-value=5.5e-05  Score=60.24  Aligned_cols=44  Identities=20%  Similarity=0.173  Sum_probs=41.2

Q ss_pred             CCCCCHHHHHHHHHHHhhcCCChHHHHhhCCCCCHHHHHHHHHH
Q 020603           76 RGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRT  119 (324)
Q Consensus        76 kg~WT~EED~~Ll~lv~~~G~kWs~IA~~lpgRT~~qcknRW~~  119 (324)
                      ...||+||.++..+++..||.+|..|+..|++||..+|-..|..
T Consensus        43 ~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~   86 (94)
T 4a69_C           43 MNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYL   86 (94)
T ss_dssp             TCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhc
Confidence            35799999999999999999999999999999999999998874

>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3

Probab=97.66  E-value=8.5e-05  Score=56.01  Aligned_cols=44  Identities=23%  Similarity=0.344  Sum_probs=40.8

Q ss_pred             CCCCCHHHHHHHHHHHhhcCCChHHHHh-hCCCCCHHHHHHHHHH
Q 020603           76 RGNLTPQEQMSILELHSKWGNRWSKIAQ-HLPGRTDNEIKNYWRT  119 (324)
Q Consensus        76 kg~WT~EED~~Ll~lv~~~G~kWs~IA~-~lpgRT~~qcknRW~~  119 (324)
                      ...||+||-++..+++.+||.+|..|++ .|++||..+|...|..
T Consensus         8 ~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~   52 (70)
T 2crg_A            8 MEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYM   52 (70)
T ss_dssp             SCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHHh
Confidence            3589999999999999999999999999 5899999999999873

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=97.61  E-value=3.6e-05  Score=77.32  Aligned_cols=51  Identities=22%  Similarity=0.352  Sum_probs=45.2

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhCCCCCcccccceeecc
Q 020603           17 DSDQLRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNY   69 (324)
Q Consensus        17 ~~~~lkkg~WT~EED~~L~~lV~k~G~~~W~~IA~~l~~~Rt~~QCr~Rw~n~   69 (324)
                      +.......+||.||-+++++++.+||. +|..||+.|+ +|+..||+.+|.++
T Consensus       374 e~~~~~~~~WT~eE~~~f~~al~~yGk-dw~~IA~~Vg-TKT~~Qvk~fy~~~  424 (482)
T 2xag_B          374 EVIQKCNARWTTEEQLLAVQAIRKYGR-DFQAISDVIG-NKSVVQVKNFFVNY  424 (482)
T ss_dssp             CCCCCCCSCCCHHHHHHHHHHHHHHTT-CHHHHHHHHS-SCCHHHHHHHHHHT
T ss_pred             ccccccCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHhC-CCCHHHHHHHHHHH
Confidence            333456789999999999999999997 9999999999 99999999998764

>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}

Probab=97.58  E-value=3.7e-05  Score=61.35  Aligned_cols=49  Identities=20%  Similarity=0.328  Sum_probs=42.9

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhC----CCCCcccccceeecccc
Q 020603           22 RRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSG----LKRTGKSCRLRWLNYLK   71 (324)
Q Consensus        22 kkg~WT~EED~~L~~lV~k~G~~~W~~IA~~l~----~~Rt~~QCr~Rw~n~L~   71 (324)
                      ...+||.||+..|++|+++|+- +|..|+..+.    .+|+..++++||..+..
T Consensus        29 ~~~~WTkEETd~Lf~L~~~fdl-RW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~   81 (93)
T 3hm5_A           29 HDDAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHICA   81 (93)
T ss_dssp             CBTTBCHHHHHHHHHHHHHTTT-CHHHHHHHSCTTTSCCCCHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHhCC-CeeeehhhhccCCCCCCCHHHHHHHHHHHHH
Confidence            3499999999999999999997 9999999993    27999999999977543

>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*

Probab=97.33  E-value=4e-05  Score=59.48  Aligned_cols=50  Identities=26%  Similarity=0.587  Sum_probs=41.0

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCC---------CChHHHHHHh---CCCCCcccccceeecccc
Q 020603           22 RRGPWTLEEDTLLIQYISRHSE---------GRWNLLAKRS---GLKRTGKSCRLRWLNYLK   71 (324)
Q Consensus        22 kkg~WT~EED~~L~~lV~k~G~---------~~W~~IA~~l---~~~Rt~~QCr~Rw~n~L~   71 (324)
                      +...||.+|-.+|+++......         ..|..||..|   |..|++.||+.+|.++..
T Consensus         3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k   64 (86)
T 2ebi_A            3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLK   64 (86)
T ss_dssp             CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence            5689999999999999976322         1599999886   568999999999988653

>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*

Probab=97.27  E-value=0.00022  Score=55.19  Aligned_cols=49  Identities=14%  Similarity=0.399  Sum_probs=40.4

Q ss_pred             cCCCCCHHHHHHHHHHHhhcCC----------ChHHHHhhCC----CCCHHHHHHHHHHHHHH
Q 020603           75 KRGNLTPQEQMSILELHSKWGN----------RWSKIAQHLP----GRTDNEIKNYWRTRVQK  123 (324)
Q Consensus        75 kkg~WT~EED~~Ll~lv~~~G~----------kWs~IA~~lp----gRT~~qcknRW~~~lkk  123 (324)
                      ....||.+|-..||+++..+..          .|..||..|.    .||+.||+.+|.++.+.
T Consensus         3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~   65 (86)
T 2ebi_A            3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKE   65 (86)
T ss_dssp             CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence            3468999999999999975321          3999999873    69999999999996665

>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}

Probab=97.24  E-value=0.0013  Score=58.36  Aligned_cols=104  Identities=12%  Similarity=0.135  Sum_probs=69.6

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhC--CCChHHHHHHhCC-CCCcccccc-------eeec---------------------
Q 020603           20 QLRRGPWTLEEDTLLIQYISRHS--EGRWNLLAKRSGL-KRTGKSCRL-------RWLN---------------------   68 (324)
Q Consensus        20 ~lkkg~WT~EED~~L~~lV~k~G--~~~W~~IA~~l~~-~Rt~~QCr~-------Rw~n---------------------   68 (324)
                      .-....||..|=..|++++.+||  .++|..|+....+ +|+...++.       ++..                     
T Consensus         4 ~~~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~c~~~~~~~~~~~~~~~~~~~~~~~   83 (211)
T 4b4c_A            4 RENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNGCIKALKDSSSGTERTGGRLGKVKG   83 (211)
T ss_dssp             ----CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHHHHHHHC-----------------C
T ss_pred             cccCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccc
Confidence            34567899999999999999999  5689999875321 444433221       0000                     


Q ss_pred             -----------------------ccc--------------------CCCcCCCCCHHHHHHHHHHHhhcC-CChHHHHh-
Q 020603           69 -----------------------YLK--------------------PDVKRGNLTPQEQMSILELHSKWG-NRWSKIAQ-  103 (324)
Q Consensus        69 -----------------------~L~--------------------p~ikkg~WT~EED~~Ll~lv~~~G-~kWs~IA~-  103 (324)
                                             .|.                    +......||++||..|+..+.+|| ++|..|-. 
T Consensus        84 ~~~~~~~v~~nA~~il~R~~~l~~L~~~v~~~~~~~~~~~i~~~~~~~~~~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D  163 (211)
T 4b4c_A           84 PTFRISGVQVNAKLVISHEEELIPLHKSIPSDPEERKQYTIPCHTKAAHFDIDWGKEDDSNLLIGIYEYGYGSWEMIKMD  163 (211)
T ss_dssp             CEEEETTEEEEHHHHHHHHHHHHHHHHHSCSSHHHHHTCCCCSCCCCCCSSSCCCHHHHHHHHHHHHHHCTTCHHHHHHC
T ss_pred             hhhhhcccchhHHHHHHhHHHHHHHHHHHHhchhhHHHcCcCCCCCCCCCCCCccHHHHHHHHHHHHHHCcCcHHHHHhC
Confidence                                   000                    000123599999999999999999 99999976 


Q ss_pred             -hC------------CCCCHHHHHHHHHHHHHH
Q 020603          104 -HL------------PGRTDNEIKNYWRTRVQK  123 (324)
Q Consensus       104 -~l------------pgRT~~qcknRW~~~lkk  123 (324)
                       .|            ..++...+..|...+|+-
T Consensus       164 ~~l~~~~k~~~~~~~k~p~a~~L~rR~~~Ll~~  196 (211)
T 4b4c_A          164 PDLSLTHKILPDDPDKKPQAKQLQTRADYLIKL  196 (211)
T ss_dssp             SSSSCTTTSSCSSTTSSCCHHHHHHHHHHHHHH
T ss_pred             hhcCccccccccccccCCChHHHHHHHHHHHHH
Confidence             22            125577899998877765

>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A

Probab=97.20  E-value=0.00018  Score=57.25  Aligned_cols=43  Identities=19%  Similarity=0.383  Sum_probs=39.8

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCChHHHHHHhCCCCCcccccceee
Q 020603           23 RGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWL   67 (324)
Q Consensus        23 kg~WT~EED~~L~~lV~k~G~~~W~~IA~~l~~~Rt~~QCr~Rw~   67 (324)
                      ...||+||.++..+++..||. +|..||+.|+ +|+..+|...|.
T Consensus        43 ~~~WT~eE~~~F~~~~~~~gK-~F~~Ia~~l~-~Kt~~~cV~~YY   85 (94)
T 4a69_C           43 MNMWSEQEKETFREKFMQHPK-NFGLIASFLE-RKTVAECVLYYY   85 (94)
T ss_dssp             TCCCCHHHHHHHHHHHHHSTT-CHHHHHHTCT-TCCHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHcCC-CHHHHHHHcC-CCCHHHHHHHHh
Confidence            578999999999999999997 9999999999 999999998764

>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3

Probab=97.13  E-value=0.00024  Score=53.52  Aligned_cols=44  Identities=11%  Similarity=0.123  Sum_probs=39.9

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCChHHHHH-HhCCCCCcccccceee
Q 020603           22 RRGPWTLEEDTLLIQYISRHSEGRWNLLAK-RSGLKRTGKSCRLRWL   67 (324)
Q Consensus        22 kkg~WT~EED~~L~~lV~k~G~~~W~~IA~-~l~~~Rt~~QCr~Rw~   67 (324)
                      ....||+||-++..+++.+||. +|..|++ .|+ +|+..+|...|.
T Consensus         7 ~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~-~Kt~~~~v~fYY   51 (70)
T 2crg_A            7 GMEEWSASEACLFEEALEKYGK-DFNDIRQDFLP-WKSLTSIIEYYY   51 (70)
T ss_dssp             SSCCCCHHHHHHHHHHHHHTCS-CHHHHHHTTCS-SSCHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHhCc-cHHHHHHHHcC-CCCHHHHHHHHH
Confidence            4568999999999999999997 9999999 589 999999998764

>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A

Probab=97.04  E-value=0.0013  Score=64.06  Aligned_cols=105  Identities=17%  Similarity=0.196  Sum_probs=79.6

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCChHHHHHHhCCCCCccccc-------ceeecc---------------------------
Q 020603           24 GPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCR-------LRWLNY---------------------------   69 (324)
Q Consensus        24 g~WT~EED~~L~~lV~k~G~~~W~~IA~~l~~~Rt~~QCr-------~Rw~n~---------------------------   69 (324)
                      +.||.-+=..++.++.+||..+-..||..|+.+++...++       .||..+                           
T Consensus       124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~~~L  203 (374)
T 2y9y_A          124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQEAL  203 (374)
T ss_dssp             CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5699999999999999999988999999995356665554       122111                           


Q ss_pred             -------------c----cCC-CcCCCCCHHHHHHHHHHHhhcC----CChHHHHhh------------CCCCCHHHHHH
Q 020603           70 -------------L----KPD-VKRGNLTPQEQMSILELHSKWG----NRWSKIAQH------------LPGRTDNEIKN  115 (324)
Q Consensus        70 -------------L----~p~-ikkg~WT~EED~~Ll~lv~~~G----~kWs~IA~~------------lpgRT~~qckn  115 (324)
                                   |    .+. .++..||++||..||-++.+||    +.|..|-..            |..||+..|..
T Consensus       204 ~~Ki~~y~~P~~~L~i~y~~~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~r  283 (374)
T 2y9y_A          204 RRKLSEYKNPFFDLKLKHPPSSNNKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELAR  283 (374)
T ss_dssp             HHHHTTCSSHHHHCCCSSCCCCSSCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHH
T ss_pred             HHHHHHccCCHHHceeccCCCCCCCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHH
Confidence                         0    011 1345799999999999999999    569999443            35799999999


Q ss_pred             HHHHHHHHHHHhc
Q 020603          116 YWRTRVQKQARHL  128 (324)
Q Consensus       116 RW~~~lkk~~r~~  128 (324)
                      |...+++-..+..
T Consensus       284 Rc~tLi~~IeKE~  296 (374)
T 2y9y_A          284 RGNTLLQCLEKEF  296 (374)
T ss_dssp             HHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHh
Confidence            9999998766553

>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3

Probab=96.70  E-value=0.0016  Score=51.61  Aligned_cols=52  Identities=15%  Similarity=0.314  Sum_probs=45.0

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCC--CChHHHHHHhCCCCCcccccceeecc
Q 020603           17 DSDQLRRGPWTLEEDTLLIQYISRHSE--GRWNLLAKRSGLKRTGKSCRLRWLNY   69 (324)
Q Consensus        17 ~~~~lkkg~WT~EED~~L~~lV~k~G~--~~W~~IA~~l~~~Rt~~QCr~Rw~n~   69 (324)
                      .+.+-+--.||.|||..|+...++.|.  ..|..||+.|+ +|+..|+++||+.+
T Consensus        27 ~s~Ge~VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~-Nks~nqV~~RFq~L   80 (95)
T 1ug2_A           27 SSTGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLG-NKTPVEVSHRFREL   80 (95)
T ss_dssp             CCCCCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHS-SCCHHHHHHHHHHH
T ss_pred             cCCCCEEEEeccccCHHHHHHHHhcCCChhHHHHHHHHHc-cCCHHHHHHHHHHH
Confidence            455556678999999999999999875  46999999999 99999999999764

>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}

Probab=95.28  E-value=0.00067  Score=50.98  Aligned_cols=48  Identities=15%  Similarity=0.269  Sum_probs=41.4

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCC--CChHHHHHHhCCCCCcccccceeecccc
Q 020603           22 RRGPWTLEEDTLLIQYISRHSE--GRWNLLAKRSGLKRTGKSCRLRWLNYLK   71 (324)
Q Consensus        22 kkg~WT~EED~~L~~lV~k~G~--~~W~~IA~~l~~~Rt~~QCr~Rw~n~L~   71 (324)
                      .--.||.|||..|+..+++.|.  .-|..||+.+  +|++.|+..||+.++.
T Consensus        13 ~vvlWTReeDR~IL~~cq~~G~s~~tfa~iA~~L--nks~~QV~~RF~~Lm~   62 (70)
T 2lr8_A           13 IIILWTRNDDRVILLECQKRGPSSKTFAYLAAKL--DKNPNQVSERFQQLMK   62 (70)
Confidence            4457999999999999999885  4699999988  4999999999988654

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11

Probab=95.31  E-value=0.052  Score=40.24  Aligned_cols=48  Identities=15%  Similarity=0.016  Sum_probs=41.4

Q ss_pred             cCCCCCHHHHHHHHHHHhhcCCC---hHHHHhhC--CCCCHHHHHHHHHHHHH
Q 020603           75 KRGNLTPQEQMSILELHSKWGNR---WSKIAQHL--PGRTDNEIKNYWRTRVQ  122 (324)
Q Consensus        75 kkg~WT~EED~~Ll~lv~~~G~k---Ws~IA~~l--pgRT~~qcknRW~~~lk  122 (324)
                      .+-.||+|.-+..+++|.++|..   +..|-+.|  +|.|..+|+.|.+.+..
T Consensus         6 ~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~   58 (64)
T 1irz_A            6 PRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRV   58 (64)
T ss_dssp             SSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHH
T ss_pred             CCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHH
Confidence            45689999999999999999955   88999986  78999999999886543

>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*

Probab=95.16  E-value=0.014  Score=46.38  Aligned_cols=49  Identities=22%  Similarity=0.358  Sum_probs=41.4

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhC----CCCCcccccceeeccc
Q 020603           21 LRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSG----LKRTGKSCRLRWLNYL   70 (324)
Q Consensus        21 lkkg~WT~EED~~L~~lV~k~G~~~W~~IA~~l~----~~Rt~~QCr~Rw~n~L   70 (324)
                      |+...||.||...|++|+++|.- +|-.|+....    ..|+..+.++||..+.
T Consensus        28 L~~~~WT~eETd~LfdLc~~fdl-Rw~vI~DRy~~~~~~~RtvEdLK~RYY~V~   80 (93)
T 4iej_A           28 LHDDAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHIC   80 (93)
T ss_dssp             TCBTTBCHHHHHHHHHHHHHTTT-CHHHHHHHCCTTTSCCCCHHHHHHHHHHHH
T ss_pred             hCCCCCCHHHHHHHHHHHHHcCC-CeEEEeeccccCCCCCCCHHHHHHHHHHHH
Confidence            34478999999999999999997 9999999874    2588888888887654

>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}

Probab=92.57  E-value=0.21  Score=43.97  Aligned_cols=49  Identities=14%  Similarity=0.250  Sum_probs=41.6

Q ss_pred             cCCCCCHHHHHHHHHHHhhcC---CChHHHHhh--CCCCCHHHHHHHHHHHHHH
Q 020603           75 KRGNLTPQEQMSILELHSKWG---NRWSKIAQH--LPGRTDNEIKNYWRTRVQK  123 (324)
Q Consensus        75 kkg~WT~EED~~Ll~lv~~~G---~kWs~IA~~--lpgRT~~qcknRW~~~lkk  123 (324)
                      ....||+.|-..|++++.+||   .+|..|++.  |.+|+...|+..+..++..
T Consensus         6 ~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~   59 (211)
T 4b4c_A            6 NIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNG   59 (211)
T ss_dssp             --CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence            446899999999999999999   689999874  7899999999887776654

>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A

Probab=92.23  E-value=0.2  Score=47.49  Aligned_cols=47  Identities=19%  Similarity=0.337  Sum_probs=41.6

Q ss_pred             CCCCHHHHHHHHHHHhhcCC-ChHHHHhhCCCCCHHHHHHHHHHHHHH
Q 020603           77 GNLTPQEQMSILELHSKWGN-RWSKIAQHLPGRTDNEIKNYWRTRVQK  123 (324)
Q Consensus        77 g~WT~EED~~Ll~lv~~~G~-kWs~IA~~lpgRT~~qcknRW~~~lkk  123 (324)
                      +.||..|...++.++.+||. +|..||..|+|+|..+|+.++.....+
T Consensus       111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~r  158 (304)
T 1ofc_X          111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWER  158 (304)
T ss_dssp             TTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence            46999999999999999995 799999999999999998777665544

>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A

Probab=91.13  E-value=0.15  Score=47.61  Aligned_cols=29  Identities=28%  Similarity=0.519  Sum_probs=26.7

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCChHHHHHH
Q 020603           24 GPWTLEEDTLLIQYISRHSEGRWNLLAKR   52 (324)
Q Consensus        24 g~WT~EED~~L~~lV~k~G~~~W~~IA~~   52 (324)
                      ..|+.+||..|+..|.+||.|+|..|..-
T Consensus       169 c~W~~~dD~~LLvGIykyGyG~We~Ir~D  197 (270)
T 2xb0_X          169 SNWTKEEDEKLLIGVFKYGYGSWTQIRDD  197 (270)
T ss_dssp             SCCCHHHHHHHHHHHHHHCTTCHHHHHHC
T ss_pred             CCcChHHHHHHHHHHHHHcCCcHHHHhcC
Confidence            45999999999999999999999999853

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11

Probab=90.48  E-value=0.28  Score=36.24  Aligned_cols=50  Identities=12%  Similarity=0.060  Sum_probs=38.6

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCC--ChHHHHHHhCC-CCCcccccceeec
Q 020603           19 DQLRRGPWTLEEDTLLIQYISRHSEG--RWNLLAKRSGL-KRTGKSCRLRWLN   68 (324)
Q Consensus        19 ~~lkkg~WT~EED~~L~~lV~k~G~~--~W~~IA~~l~~-~Rt~~QCr~Rw~n   68 (324)
                      ....+-.||+|..++.+++|+..|..  -+..|.+.|+. +.|..++..|.+.
T Consensus         3 ~~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQK   55 (64)
T 1irz_A            3 QKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQK   55 (64)
T ss_dssp             CCCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHH
T ss_pred             CCCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHH
Confidence            34567899999999999999999953  28899999863 4577777655443

>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A

Probab=82.95  E-value=2.3  Score=39.54  Aligned_cols=48  Identities=13%  Similarity=0.233  Sum_probs=42.2

Q ss_pred             CCCCCHHHHHHHHHHHhhcC---CChHHHHh--hCCCCCHHHHHHHHHHHHHH
Q 020603           76 RGNLTPQEQMSILELHSKWG---NRWSKIAQ--HLPGRTDNEIKNYWRTRVQK  123 (324)
Q Consensus        76 kg~WT~EED~~Ll~lv~~~G---~kWs~IA~--~lpgRT~~qcknRW~~~lkk  123 (324)
                      ++.||+.|-..|++.+.+||   .+|..|+.  .|+.|+...++.-+..++..
T Consensus         3 ~~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~L~~ks~~~i~~~~~~li~~   55 (270)
T 2xb0_X            3 LGSIGESEVRALYKAILKFGNLKEILDELIADGTLPVKSFEKYGETYDEMMEA   55 (270)
T ss_dssp             TCCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTSSCCCCHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCCHHHHHHHHHHHHHH
Confidence            57899999999999999999   58999977  57899999999888876654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	324
d1gvda_	52	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	1e-18
d1gvda_	52	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	7e-09
d2ckxa1	83	a.4.1.3 (A:578-660) Telomere binding protein TBP1	2e-18
d1guua_	50	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	8e-17
d1guua_	50	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	1e-07
d1w0ta_	52	a.4.1.4 (A:) DNA-binding domain of human telomeric	1e-15
d1w0ta_	52	a.4.1.4 (A:) DNA-binding domain of human telomeric	3e-06
d1w0ua_	55	a.4.1.4 (A:) Telomeric repeat binding factor 2, TR	1e-14
d1w0ua_	55	a.4.1.4 (A:) Telomeric repeat binding factor 2, TR	4e-06
d1igna1	86	a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Ba	2e-13
d1igna1	86	a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Ba	5e-09
d2cu7a1	65	a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap	9e-12
d2cu7a1	65	a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap	5e-09
d1gv2a2	47	a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mou	1e-11
d1gv2a2	47	a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mou	1e-10
d1xc5a1	68	a.4.1.3 (A:413-480) Nuclear receptor corepressor 2	3e-11
d2iw5b1	65	a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu	2e-10
d2iw5b1	65	a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu	2e-07
d2cjja1	63	a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Anti	1e-09
d2cjja1	63	a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Anti	4e-07
d1x41a1	47	a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, T	3e-09
d1x41a1	47	a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, T	0.002
d2cqra1	60	a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1	1e-08
d2cqra1	60	a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1	2e-08
d1ug2a_	95	a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mu	1e-05
d1ug2a_	95	a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mu	2e-04
d1fexa_	59	a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 96	2e-04

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 76.3 bits (188), Expect = 1e-18
 Identities = 24/53 (45%), Positives = 34/53 (64%), Gaps = 1/53 (1%)

Query: 21 LRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPD 73
          L +GPWT EED  LI+ + ++   RW+++AK     R GK CR RW N+L P+
Sbjct: 1  LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE 52

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.0 bits (117), Expect = 7e-09
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 74  VKRGNLTPQEQMSILELHSKWG-NRWSKIAQHLPGRTDNEIKNYWRT 119
           + +G  T +E   +++L  K+G  RWS IA+HL GR   + +  W  
Sbjct: 1   LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHN 47

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 83

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score = 76.6 bits (188), Expect = 2e-18
 Identities = 18/82 (21%), Positives = 35/82 (42%), Gaps = 9/82 (10%)

Query: 25 PWTLEEDTLLIQYISRHSEGRWNLLAKR---SGLKRTGKSCRLRWLNYLK-----PDVKR 76
          P+++ E   L++ +     GRW  +  R   +   RT    + +W   +      P  +R
Sbjct: 2  PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRR 61

Query: 77 GNLTPQEQM-SILELHSKWGNR 97
          G   PQ+ +  +L  H+ W  +
Sbjct: 62 GEPVPQDLLDRVLAAHAYWSQQ 83

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 50

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 70.9 bits (174), Expect = 8e-17
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 23 RGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPD 73
          +  WT EED  L + + ++    W ++A      RT   C+ RW   L P+
Sbjct: 1  KTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPE 50

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 50

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.5 bits (108), Expect = 1e-07
 Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 1/45 (2%)

Query: 76  RGNLTPQEQMSILELHSKWG-NRWSKIAQHLPGRTDNEIKNYWRT 119
           +   T +E   + +L  + G + W  IA +LP RTD + ++ W+ 
Sbjct: 1   KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQK 45

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.6 bits (165), Expect = 1e-15
 Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 1/51 (1%)

Query: 22 RRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLK-RTGKSCRLRWLNYLK 71
          +R  W  EED  L   + ++ EG W+ +        RT    + RW    K
Sbjct: 1  KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (98), Expect = 3e-06
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 3/48 (6%)

Query: 75  KRGNLTPQEQMSILELHSKWGN-RWSKIAQHLP--GRTDNEIKNYWRT 119
           KR     +E  ++     K+G   WSKI  H     RT   +K+ WRT
Sbjct: 1   KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRT 48

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Length = 55

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.3 bits (159), Expect = 1e-14
 Identities = 12/54 (22%), Positives = 24/54 (44%), Gaps = 1/54 (1%)

Query: 22 RRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLK-RTGKSCRLRWLNYLKPDV 74
          ++  WT+EE   +   + ++ EG W  ++K      RT    + RW    +  +
Sbjct: 1  KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 54

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Length = 55

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (97), Expect = 4e-06
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 3/48 (6%)

Query: 75  KRGNLTPQEQMSILELHSKWG-NRWSKIAQH--LPGRTDNEIKNYWRT 119
           K+   T +E   +     K+G   W+ I+++     RT   IK+ WRT
Sbjct: 1   KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRT 48

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 86

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 63.0 bits (153), Expect = 2e-13
 Identities = 12/79 (15%), Positives = 29/79 (36%), Gaps = 6/79 (7%)

Query: 23 RGPWTLEEDTLLIQYISRHSEGR-----WNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRG 77
          +  +T EED  ++  + ++   R     ++ ++       TG S R R+  YL   ++  
Sbjct: 1  KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVP-NHTGNSIRHRFRVYLSKRLEYV 59

Query: 78 NLTPQEQMSILELHSKWGN 96
              +    + +       
Sbjct: 60 YEVDKFGKLVRDDDGNLIK 78

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 86

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.7 bits (121), Expect = 5e-09
 Identities = 13/58 (22%), Positives = 29/58 (50%), Gaps = 6/58 (10%)

Query: 76  RGNLTPQEQMSILELHSKWGNR------WSKIAQHLPGRTDNEIKNYWRTRVQKQARH 127
           + + T +E   IL++  K   R      + +I+ ++P  T N I++ +R  + K+  +
Sbjct: 1   KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEY 58

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.6 bits (139), Expect = 9e-12
 Identities = 16/63 (25%), Positives = 23/63 (36%), Gaps = 2/63 (3%)

Query: 23 RGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQ 82
             WT+EE  L  Q +++     W  ++K  G  RT    +     Y K  VK G     
Sbjct: 2  SVKWTIEEKELFEQGLAKFGRR-WTKISKLIG-SRTVLQVKSYARQYFKNKVKCGLDKET 59

Query: 83 EQM 85
             
Sbjct: 60 PNQ 62

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.9 bits (119), Expect = 5e-09
 Identities = 13/48 (27%), Positives = 28/48 (58%)

Query: 80  TPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARH 127
           T +E+    +  +K+G RW+KI++ +  RT  ++K+Y R   + + + 
Sbjct: 6   TIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC 53

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 56.8 bits (137), Expect = 1e-11
 Identities = 21/44 (47%), Positives = 31/44 (70%)

Query: 76  RGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRT 119
           + + T +E   I + H + GNRW++IA+ LPGRTDN IKN+W +
Sbjct: 1   KTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNS 44

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.7 bits (129), Expect = 1e-10
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 23 RGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLK 71
          +  WT EED ++ Q   R    RW  +AK     RT  + +  W + ++
Sbjct: 1  KTSWTEEEDRIIYQAHKRLGN-RWAEIAKLLP-GRTDNAIKNHWNSTMR 47

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 68

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.1 bits (135), Expect = 3e-11
 Identities = 10/50 (20%), Positives = 17/50 (34%)

Query: 71  KPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTR 120
           K        + QE+ +  E   +    +  IA  L  +T  E   Y+   
Sbjct: 12  KDRQVMNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLT 61

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.1 bits (130), Expect = 2e-10
 Identities = 14/80 (17%), Positives = 31/80 (38%), Gaps = 17/80 (21%)

Query: 60  KSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRT 119
           + C  RW             T +EQ+  ++   K+G  +  I+  +  ++  ++KN++  
Sbjct: 2   QKCNARW-------------TTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFF-- 46

Query: 120 RVQKQARHLKIDANSTTFQE 139
                 R   ID     ++ 
Sbjct: 47  --VNYRRRFNIDEVLQEWEA 64

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.2 bits (107), Expect = 2e-07
 Identities = 11/52 (21%), Positives = 23/52 (44%), Gaps = 2/52 (3%)

Query: 20 QLRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLK 71
          Q     WT EE  L +Q I ++    +  ++   G  ++    +  ++NY +
Sbjct: 2  QKCNARWTTEEQLLAVQAIRKYGRD-FQAISDVIG-NKSVVQVKNFFVNYRR 51

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Length = 63

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

 Score = 51.9 bits (124), Expect = 1e-09
 Identities = 9/54 (16%), Positives = 23/54 (42%), Gaps = 3/54 (5%)

Query: 25 PWTLEEDTLLIQYISRHSEGRWNLLAKRSGL--KRTGKSCRLRWLNYLKPDVKR 76
          PW+ +E+    + ++ + +   +  A  +     RT +  +  +   L  D+K 
Sbjct: 3  PWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHY-EILVEDIKY 55

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Length = 63

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

 Score = 44.5 bits (105), Expect = 4e-07
 Identities = 10/48 (20%), Positives = 24/48 (50%), Gaps = 4/48 (8%)

Query: 80  TPQEQMSILELHSKWG----NRWSKIAQHLPGRTDNEIKNYWRTRVQK 123
           + +E  +     + +     +RW+ +A+ + GRT  E+K ++   V+ 
Sbjct: 5   SAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVED 52

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.9 bits (119), Expect = 3e-09
 Identities = 10/44 (22%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 26 WTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNY 69
          WT +E+  L++ +     G W  +A +    +T + C   ++ Y
Sbjct: 4  WTAQEEMALLEAVMDCGFGNWQDVANQMC-TKTKEECEKHYMKY 46

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.8 bits (77), Expect = 0.002
 Identities = 11/39 (28%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 80  TPQEQMSILELHSKWG-NRWSKIAQHLPGRTDNEIKNYW 117
           T QE+M++LE     G   W  +A  +  +T  E + ++
Sbjct: 5   TAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHY 43

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 60

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.5 bits (115), Expect = 1e-08
 Identities = 9/52 (17%), Positives = 21/52 (40%), Gaps = 2/52 (3%)

Query: 17 DSDQLRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGL--KRTGKSCRLRW 66
          +  +    PWT  +  LL   + ++  G  +   K +     ++ + C  R+
Sbjct: 6  ERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARY 57

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 60

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.1 bits (114), Expect = 2e-08
 Identities = 7/52 (13%), Positives = 20/52 (38%), Gaps = 4/52 (7%)

Query: 71  KPDVKRGNLTPQEQMSILELHSKWG----NRWSKIAQHLPGRTDNEIKNYWR 118
           +        T  +Q  +     ++     + W KIA+ +P ++  +    ++
Sbjct: 7   RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYK 58

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.0 bits (96), Expect = 1e-05
 Identities = 13/67 (19%), Positives = 25/67 (37%), Gaps = 3/67 (4%)

Query: 56  KRTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNR---WSKIAQHLPGRTDNE 112
           K +  +             K    T +    IL +  + G +   +S I+Q L  +T  E
Sbjct: 13  KASEATVCANNSKVSSTGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVE 72

Query: 113 IKNYWRT 119
           + + +R 
Sbjct: 73  VSHRFRE 79

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.6 bits (87), Expect = 2e-04
 Identities = 11/75 (14%), Positives = 31/75 (41%), Gaps = 6/75 (8%)

Query: 2  SSFSKSSTSSIYGEN---DSDQLRRGPWTLEEDTLLIQYISRH--SEGRWNLLAKRSGLK 56
           +  K+S +++   N    S   +   WT E D +++            +++++++ G  
Sbjct: 9  GALPKASEATVCANNSKVSSTGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLG-N 67

Query: 57 RTGKSCRLRWLNYLK 71
          +T      R+   ++
Sbjct: 68 KTPVEVSHRFRELMQ 82

>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]} Length = 59

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Rap1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.0 bits (86), Expect = 2e-04
 Identities = 11/57 (19%), Positives = 26/57 (45%), Gaps = 8/57 (14%)

Query: 23 RGPWTLEEDTLLIQYISRHSEGR--------WNLLAKRSGLKRTGKSCRLRWLNYLK 71
          R  +T  +D  ++ Y+  ++           W  + K S  + + +S + R+L +L+
Sbjct: 2  RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR 58

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	324
d1igna1	86	DNA-binding domain of rap1 {Baker's yeast (Sacchar	99.75
d1gvda_	52	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.74
d1guua_	50	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.68
d1gv2a2	47	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.67
d1gvda_	52	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.66
d2ckxa1	83	Telomere binding protein TBP1 {Tobacco (Nicotiana	99.61
d1guua_	50	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.59
d1w0ua_	55	Telomeric repeat binding factor 2, TRF2 {Human (Ho	99.58
d1w0ta_	52	DNA-binding domain of human telomeric protein, hTR	99.51
d1w0ua_	55	Telomeric repeat binding factor 2, TRF2 {Human (Ho	99.49
d1gv2a2	47	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.49
d1igna1	86	DNA-binding domain of rap1 {Baker's yeast (Sacchar	99.49
d1w0ta_	52	DNA-binding domain of human telomeric protein, hTR	99.49
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	99.48
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	99.44
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	99.42
d2cqra1	60	DnaJ homolog subfamily C member 1 {Human (Homo sap	99.37
d2cqra1	60	DnaJ homolog subfamily C member 1 {Human (Homo sap	99.35
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	99.35
d2cjja1	63	Radialis {Garden snapdragon (Antirrhinum majus) [T	99.33
d1ug2a_	95	2610100b20rik gene product {Mouse (Mus musculus) [	99.31
d2cjja1	63	Radialis {Garden snapdragon (Antirrhinum majus) [T	99.25
d2ckxa1	83	Telomere binding protein TBP1 {Tobacco (Nicotiana	99.25
d2iw5b1	65	REST corepressor 1, CoREST {Human (Homo sapiens) [	99.16
d1xc5a1	68	Nuclear receptor corepressor 2 {Human (Homo sapien	99.13
d2iw5b1	65	REST corepressor 1, CoREST {Human (Homo sapiens) [	98.99
d1xc5a1	68	Nuclear receptor corepressor 2 {Human (Homo sapien	98.93
d1ug2a_	95	2610100b20rik gene product {Mouse (Mus musculus) [	98.88
d2crga1	57	Metastasis associated protein MTA3 {Mouse (Mus mus	98.18
d2cqqa1	59	DnaJ homolog subfamily C member 1 {Human (Homo sap	98.18
d2cqqa1	59	DnaJ homolog subfamily C member 1 {Human (Homo sap	98.02
d2crga1	57	Metastasis associated protein MTA3 {Mouse (Mus mus	97.73
d1x58a1	49	Hypothetical protein 4930532d21rik {Mouse (Mus mus	97.43
d1fexa_	59	Rap1 {Human (Homo sapiens) [TaxId: 9606]}	97.2
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	97.14
d1fexa_	59	Rap1 {Human (Homo sapiens) [TaxId: 9606]}	96.8
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	96.25
d1wgxa_	73	Hypothetical protein C14orf106 (KIAA1903) {Human (	95.87
d1wgxa_	73	Hypothetical protein C14orf106 (KIAA1903) {Human (	95.67
d1x58a1	49	Hypothetical protein 4930532d21rik {Mouse (Mus mus	94.77
d1ofcx2	128	SLIDE domain of the nucleosome remodeling ATPase I	92.63
d1ofcx1	52	SANT domain of the nucleosome remodeling ATPase IS	89.87

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.75  E-value=6.5e-21  Score=149.01  Aligned_cols=72  Identities=15%  Similarity=0.208  Sum_probs=66.3

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCC-----ChHHHHHHhCCCCCcccccceeeccccCCCcCCCCCHHHHHHHHHHHhhcC
Q 020603           23 RGPWTLEEDTLLIQYISRHSEG-----RWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWG   95 (324)
Q Consensus        23 kg~WT~EED~~L~~lV~k~G~~-----~W~~IA~~l~~~Rt~~QCr~Rw~n~L~p~ikkg~WT~EED~~Ll~lv~~~G   95 (324)
                      |++||+|||++|+++|.+||..     +|.+||+.|+ |||++|||.||.++|+|.++++.||++||++|+.++..+.
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~~~~~~W~~IA~~lp-gRt~~qcr~Rw~~~L~p~l~~~~~t~~ed~ll~d~~~~li   77 (86)
T d1igna1           1 KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVP-NHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDGNLI   77 (86)
T ss_dssp             CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTST-TSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTSCBC
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCcCCccCHHHHHHHcC-CCCHHHHHHHHHHHcCccccCCCCCCchhHHHHHHhhccc
Confidence            6899999999999999999964     4999999999 9999999999999999999999999999999987765543

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.74  E-value=2.8e-19  Score=127.09  Aligned_cols=52  Identities=46%  Similarity=0.912  Sum_probs=50.1

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhCCCCCcccccceeeccccCC
Q 020603           21 LRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPD   73 (324)
Q Consensus        21 lkkg~WT~EED~~L~~lV~k~G~~~W~~IA~~l~~~Rt~~QCr~Rw~n~L~p~   73 (324)
                      |+||+||+|||++|+++|++||.++|..||+.|+ +||+.||++||.++|+|+
T Consensus         1 l~rg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qc~~Rw~~~L~P~   52 (52)
T d1gvda_           1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE   52 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTST-TCCHHHHHHHHHHTTSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHC-CCCHHHHHHHHHhhCCCC
Confidence            6899999999999999999999889999999999 999999999999999984

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.68  E-value=3.6e-18  Score=120.21  Aligned_cols=50  Identities=30%  Similarity=0.677  Sum_probs=48.1

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCChHHHHHHhCCCCCcccccceeeccccCC
Q 020603           23 RGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPD   73 (324)
Q Consensus        23 kg~WT~EED~~L~~lV~k~G~~~W~~IA~~l~~~Rt~~QCr~Rw~n~L~p~   73 (324)
                      |++||+|||++|+++|.+||.++|..||+.|+ +|++.||++||.++|+|+
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~   50 (50)
T d1guua_           1 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPE   50 (50)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTST-TCCHHHHHHHHHHHHSCC
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHC-CCCHHHHHHHHHhhCCCC
Confidence            68999999999999999999889999999999 999999999999999984

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.67  E-value=2e-17  Score=115.15  Aligned_cols=47  Identities=45%  Similarity=0.839  Sum_probs=44.9

Q ss_pred             CCCCCHHHHHHHHHHHhhcCCChHHHHhhCCCCCHHHHHHHHHHHHH
Q 020603           76 RGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQ  122 (324)
Q Consensus        76 kg~WT~EED~~Ll~lv~~~G~kWs~IA~~lpgRT~~qcknRW~~~lk  122 (324)
                      +++||+|||++|+++|++||++|+.||++|||||++|||+||+.++|
T Consensus         1 K~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~gRt~~~~knr~~~~lr   47 (47)
T d1gv2a2           1 KTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMR   47 (47)
T ss_dssp             CCCCCHHHHHHHHHHHHHHSSCHHHHHTTCTTCCHHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHHhhHHHHHHhHcCCCCHHHHHHHHHHHcC
Confidence            57999999999999999999999999999999999999999998874

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.66  E-value=3.6e-17  Score=116.05  Aligned_cols=50  Identities=32%  Similarity=0.710  Sum_probs=47.1

Q ss_pred             CcCCCCCHHHHHHHHHHHhhcC-CChHHHHhhCCCCCHHHHHHHHHHHHHH
Q 020603           74 VKRGNLTPQEQMSILELHSKWG-NRWSKIAQHLPGRTDNEIKNYWRTRVQK  123 (324)
Q Consensus        74 ikkg~WT~EED~~Ll~lv~~~G-~kWs~IA~~lpgRT~~qcknRW~~~lkk  123 (324)
                      +++|+||+|||++|+++|.+|| ++|..||+.|+|||+.||++||+++|++
T Consensus         1 l~rg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qc~~Rw~~~L~P   51 (52)
T d1gvda_           1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP   51 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHhhCCC
Confidence            4789999999999999999999 6899999999999999999999998764

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.61  E-value=6e-17  Score=125.21  Aligned_cols=74  Identities=24%  Similarity=0.495  Sum_probs=60.5

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCChHHHHHHh---CCCCCcccccceeecccc-----CCCcCCCCCHHHHHHHHHHHhhcC
Q 020603           24 GPWTLEEDTLLIQYISRHSEGRWNLLAKRS---GLKRTGKSCRLRWLNYLK-----PDVKRGNLTPQEQMSILELHSKWG   95 (324)
Q Consensus        24 g~WT~EED~~L~~lV~k~G~~~W~~IA~~l---~~~Rt~~QCr~Rw~n~L~-----p~ikkg~WT~EED~~Ll~lv~~~G   95 (324)
                      .+||+|||++|+++|.+||.++|..|++.+   ..+||+.||++||+++|+     +..+++.|+++|   |+..|.+++
T Consensus         1 r~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~~~Rt~~qck~RWrn~l~~~~~~~~~~~~~~~p~e---ll~~v~~~~   77 (83)
T d2ckxa1           1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQD---LLDRVLAAH   77 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHH---HHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCcccHHHHHHHHHhhccCCCHHHHHHHHHHHhhhhccCcccccCCCCCHH---HHHHHHHHH
Confidence            489999999999999999999999999864   238999999999999984     677889999877   444444455


Q ss_pred             CChHH
Q 020603           96 NRWSK  100 (324)
Q Consensus        96 ~kWs~  100 (324)
                      .+|++
T Consensus        78 ~~wsq   82 (83)
T d2ckxa1          78 AYWSQ   82 (83)
T ss_dssp             HHHHH
T ss_pred             HHHhc
Confidence            56653

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.59  E-value=5e-16  Score=109.06  Aligned_cols=48  Identities=27%  Similarity=0.515  Sum_probs=45.2

Q ss_pred             CCCCCHHHHHHHHHHHhhcC-CChHHHHhhCCCCCHHHHHHHHHHHHHH
Q 020603           76 RGNLTPQEQMSILELHSKWG-NRWSKIAQHLPGRTDNEIKNYWRTRVQK  123 (324)
Q Consensus        76 kg~WT~EED~~Ll~lv~~~G-~kWs~IA~~lpgRT~~qcknRW~~~lkk  123 (324)
                      |++||+|||++|+++|.+|| ++|..||+.|+|||+.||++||+++|.+
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P   49 (50)
T d1guua_           1 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP   49 (50)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHhhCCC
Confidence            57899999999999999999 6899999999999999999999998864

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=2.9e-16  Score=112.46  Aligned_cols=54  Identities=22%  Similarity=0.486  Sum_probs=48.8

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhC-CCCCcccccceeeccccCCCc
Q 020603           22 RRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSG-LKRTGKSCRLRWLNYLKPDVK   75 (324)
Q Consensus        22 kkg~WT~EED~~L~~lV~k~G~~~W~~IA~~l~-~~Rt~~QCr~Rw~n~L~p~ik   75 (324)
                      +|++||+|||++|+++|++||.++|..||+.++ .+|++.||++||++++++.++
T Consensus         1 Kr~~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~Rt~~q~k~Rwrn~~k~~~N   55 (55)
T d1w0ua_           1 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN   55 (55)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCChHHHHHhhcCCCCcCHHHHHHHHHHHhcCCCC
Confidence            578999999999999999999889999999843 289999999999999988764

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=2.4e-15  Score=106.44  Aligned_cols=49  Identities=27%  Similarity=0.474  Sum_probs=44.7

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhCC-CCCcccccceeeccc
Q 020603           22 RRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGL-KRTGKSCRLRWLNYL   70 (324)
Q Consensus        22 kkg~WT~EED~~L~~lV~k~G~~~W~~IA~~l~~-~Rt~~QCr~Rw~n~L   70 (324)
                      ++++||+|||++|+++|.+||.++|..||+.+++ +|++.||++||++++
T Consensus         1 kr~~WT~eED~~L~~~v~~~G~~~W~~I~~~~~~~~Rt~~q~r~Rw~nl~   50 (52)
T d1w0ta_           1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMK   50 (52)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCHHHHHhhcCCCCCCHHHHHHHHHHHH
Confidence            5899999999999999999999999999988542 799999999999865

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=8.4e-15  Score=104.69  Aligned_cols=50  Identities=28%  Similarity=0.436  Sum_probs=45.5

Q ss_pred             cCCCCCHHHHHHHHHHHhhcC-CChHHHHhh--CCCCCHHHHHHHHHHHHHHH
Q 020603           75 KRGNLTPQEQMSILELHSKWG-NRWSKIAQH--LPGRTDNEIKNYWRTRVQKQ  124 (324)
Q Consensus        75 kkg~WT~EED~~Ll~lv~~~G-~kWs~IA~~--lpgRT~~qcknRW~~~lkk~  124 (324)
                      ++.+||+|||++|+++|.+|| ++|..|++.  |++||+.||++||++++++.
T Consensus         1 Kr~~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~Rt~~q~k~Rwrn~~k~~   53 (55)
T d1w0ua_           1 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLG   53 (55)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTT
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCChHHHHHhhcCCCCcCHHHHHHHHHHHhcCC
Confidence            467999999999999999999 689999997  56999999999999988763

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.49  E-value=3.3e-15  Score=103.69  Aligned_cols=47  Identities=30%  Similarity=0.542  Sum_probs=44.5

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCChHHHHHHhCCCCCcccccceeecccc
Q 020603           23 RGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLK   71 (324)
Q Consensus        23 kg~WT~EED~~L~~lV~k~G~~~W~~IA~~l~~~Rt~~QCr~Rw~n~L~   71 (324)
                      |++||+|||++|+++|++||. +|..||+.|+ +||+.||+.||.++|+
T Consensus         1 K~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~-gRt~~~~knr~~~~lr   47 (47)
T d1gv2a2           1 KTSWTEEEDRIIYQAHKRLGN-RWAEIAKLLP-GRTDNAIKNHWNSTMR   47 (47)
T ss_dssp             CCCCCHHHHHHHHHHHHHHSS-CHHHHHTTCT-TCCHHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHHhh-HHHHHHhHcC-CCCHHHHHHHHHHHcC
Confidence            689999999999999999998 8999999999 9999999999998763

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.49  E-value=4e-15  Score=115.74  Aligned_cols=60  Identities=22%  Similarity=0.316  Sum_probs=53.5

Q ss_pred             CCCCCHHHHHHHHHHHhhcCCC------hHHHHhhCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCh
Q 020603           76 RGNLTPQEQMSILELHSKWGNR------WSKIAQHLPGRTDNEIKNYWRTRVQKQARHLKIDANST  135 (324)
Q Consensus        76 kg~WT~EED~~Ll~lv~~~G~k------Ws~IA~~lpgRT~~qcknRW~~~lkk~~r~~~~~~~s~  135 (324)
                      ++.||+|||++|+++|.+||.+      |.+||+.|||||++|||+||+++|.+.+++........
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~~~~~~W~~IA~~lpgRt~~qcr~Rw~~~L~p~l~~~~~t~~ed   66 (86)
T d1igna1           1 KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVYEVDKFG   66 (86)
T ss_dssp             CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCEECBCTTS
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCcCCccCHHHHHHHcCCCCHHHHHHHHHHHcCccccCCCCCCchh
Confidence            5799999999999999999964      99999999999999999999999999887766654443

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=2e-14  Score=101.67  Aligned_cols=48  Identities=33%  Similarity=0.486  Sum_probs=43.5

Q ss_pred             cCCCCCHHHHHHHHHHHhhcC-CChHHHHhhC--CCCCHHHHHHHHHHHHH
Q 020603           75 KRGNLTPQEQMSILELHSKWG-NRWSKIAQHL--PGRTDNEIKNYWRTRVQ  122 (324)
Q Consensus        75 kkg~WT~EED~~Ll~lv~~~G-~kWs~IA~~l--pgRT~~qcknRW~~~lk  122 (324)
                      ++++||+|||++|+++|.+|| ++|..|++.+  .|||+.||++||+++.|
T Consensus         1 kr~~WT~eED~~L~~~v~~~G~~~W~~I~~~~~~~~Rt~~q~r~Rw~nl~K   51 (52)
T d1w0ta_           1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK   51 (52)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCHHHHHhhcCCCCCCHHHHHHHHHHHHC
Confidence            478999999999999999999 5899999975  59999999999998654

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=5e-15  Score=102.71  Aligned_cols=44  Identities=23%  Similarity=0.587  Sum_probs=42.2

Q ss_pred             CCCHHHHHHHHHHHHHhCCCChHHHHHHhCCCCCcccccceeecc
Q 020603           25 PWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNY   69 (324)
Q Consensus        25 ~WT~EED~~L~~lV~k~G~~~W~~IA~~l~~~Rt~~QCr~Rw~n~   69 (324)
                      .||.|||++|+++|.+||.++|..||+.|+ +||+.|||.||.++
T Consensus         3 ~Wt~eEd~~L~~~v~~~G~~nW~~Ia~~~~-~Rt~~Qcr~r~~~~   46 (47)
T d1x41a1           3 SWTAQEEMALLEAVMDCGFGNWQDVANQMC-TKTKEECEKHYMKY   46 (47)
T ss_dssp             SSCHHHHHHHHHHHHHTCTTCHHHHHHHHT-TSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCccHHHHHHHcC-CCCHHHHHHHHHHh
Confidence            499999999999999999989999999999 99999999999876

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=3.8e-14  Score=103.88  Aligned_cols=52  Identities=25%  Similarity=0.387  Sum_probs=47.7

Q ss_pred             CCCCCHHHHHHHHHHHhhcCCChHHHHhhCCCCCHHHHHHHHHHHHHHHHHh
Q 020603           76 RGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARH  127 (324)
Q Consensus        76 kg~WT~EED~~Ll~lv~~~G~kWs~IA~~lpgRT~~qcknRW~~~lkk~~r~  127 (324)
                      ...||+|||++|++++.+||.+|..||++|++||+.||++||+.++++..+.
T Consensus         2 ~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~ry~~~~~~~~k~   53 (65)
T d2cu7a1           2 SVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC   53 (65)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS
T ss_pred             CCCCCHHHHHHHHHHHHHhcchHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc
Confidence            3579999999999999999999999999999999999999999988875443

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=9.2e-14  Score=96.22  Aligned_cols=43  Identities=26%  Similarity=0.462  Sum_probs=40.9

Q ss_pred             CCCHHHHHHHHHHHhhcC-CChHHHHhhCCCCCHHHHHHHHHHH
Q 020603           78 NLTPQEQMSILELHSKWG-NRWSKIAQHLPGRTDNEIKNYWRTR  120 (324)
Q Consensus        78 ~WT~EED~~Ll~lv~~~G-~kWs~IA~~lpgRT~~qcknRW~~~  120 (324)
                      .||+|||++|+++|++|| ++|..||++|+|||+.||+.||.++
T Consensus         3 ~Wt~eEd~~L~~~v~~~G~~nW~~Ia~~~~~Rt~~Qcr~r~~~~   46 (47)
T d1x41a1           3 SWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKY   46 (47)
T ss_dssp             SSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCccHHHHHHHcCCCCHHHHHHHHHHh
Confidence            599999999999999999 5799999999999999999999875

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=1.1e-13  Score=100.25  Aligned_cols=52  Identities=19%  Similarity=0.454  Sum_probs=47.6

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHhCCC---ChHHHHHHhCCCCCcccccceeec
Q 020603           16 NDSDQLRRGPWTLEEDTLLIQYISRHSEG---RWNLLAKRSGLKRTGKSCRLRWLN   68 (324)
Q Consensus        16 ~~~~~lkkg~WT~EED~~L~~lV~k~G~~---~W~~IA~~l~~~Rt~~QCr~Rw~n   68 (324)
                      .+.+...+++||+|||++|+++|.+||.+   +|.+||+.|| +||+.||+.||+.
T Consensus         5 ~~~~~~~~~~WT~eEd~~L~~~v~~~~~~~~~~W~~IA~~l~-~Rt~~qc~~R~~~   59 (60)
T d2cqra1           5 KERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVP-SKSKEDCIARYKL   59 (60)
T ss_dssp             CCTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCS-SSCHHHHHHHHHH
T ss_pred             cccCCcCCCCcCHHHHHHHHHHHHHcCCccchHHHHHHHHcC-CCCHHHHHHHHHH
Confidence            36778889999999999999999999975   5999999999 9999999999964

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=5.9e-13  Score=96.29  Aligned_cols=50  Identities=14%  Similarity=0.270  Sum_probs=45.3

Q ss_pred             cCCCcCCCCCHHHHHHHHHHHhhcCC----ChHHHHhhCCCCCHHHHHHHHHHH
Q 020603           71 KPDVKRGNLTPQEQMSILELHSKWGN----RWSKIAQHLPGRTDNEIKNYWRTR  120 (324)
Q Consensus        71 ~p~ikkg~WT~EED~~Ll~lv~~~G~----kWs~IA~~lpgRT~~qcknRW~~~  120 (324)
                      .+...+++||+|||++|+++|.+||.    +|.+||+.|||||..||++||+.+
T Consensus         7 ~~~~~~~~WT~eEd~~L~~~v~~~~~~~~~~W~~IA~~l~~Rt~~qc~~R~~~L   60 (60)
T d2cqra1           7 RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLL   60 (60)
T ss_dssp             TTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHH
T ss_pred             cCCcCCCCcCHHHHHHHHHHHHHcCCccchHHHHHHHHcCCCCHHHHHHHHHHC
Confidence            45567789999999999999999995    599999999999999999999864

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=6e-14  Score=102.83  Aligned_cols=59  Identities=29%  Similarity=0.401  Sum_probs=52.4

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCChHHHHHHhCCCCCcccccceeeccccCCCcCCCCCHHH
Q 020603           23 RGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQE   83 (324)
Q Consensus        23 kg~WT~EED~~L~~lV~k~G~~~W~~IA~~l~~~Rt~~QCr~Rw~n~L~p~ikkg~WT~EE   83 (324)
                      ..+||+|||++|+++|.+||. +|..||+.|+ +||..||+.||.+++.+..+.+.+.+.+
T Consensus         2 ~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~~~-~Rt~~q~k~ry~~~~~~~~k~~~~~~~~   60 (65)
T d2cu7a1           2 SVKWTIEEKELFEQGLAKFGR-RWTKISKLIG-SRTVLQVKSYARQYFKNKVKCGLDKETP   60 (65)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCS-CHHHHHHHHS-SSCHHHHHHHHHHHHHHHSCSCTTCCCS
T ss_pred             CCCCCHHHHHHHHHHHHHhcc-hHHHHHHHcC-CCCHHHHHHHHHHHHHHHHhcCCCCCCc
Confidence            367999999999999999995 9999999999 9999999999999998877777665443

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

Probab=99.33  E-value=1.8e-12  Score=94.63  Aligned_cols=47  Identities=21%  Similarity=0.446  Sum_probs=42.8

Q ss_pred             CCCCHHHHHHHHHHHhhcCC----ChHHHHhhCCCCCHHHHHHHHHHHHHH
Q 020603           77 GNLTPQEQMSILELHSKWGN----RWSKIAQHLPGRTDNEIKNYWRTRVQK  123 (324)
Q Consensus        77 g~WT~EED~~Ll~lv~~~G~----kWs~IA~~lpgRT~~qcknRW~~~lkk  123 (324)
                      .+||+|||++|++++.+||.    +|.+||.+|+|||..||++||+.+++.
T Consensus         2 ~~WT~eEd~~L~~~v~~~~~~~~~~W~~Ia~~l~gRt~~qc~~r~~~L~~d   52 (63)
T d2cjja1           2 RPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVED   52 (63)
T ss_dssp             CSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHCCCCchHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            47999999999999999995    499999999999999999999776554

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.31  E-value=1.8e-12  Score=101.84  Aligned_cols=71  Identities=20%  Similarity=0.141  Sum_probs=63.5

Q ss_pred             hCCCCCcccccceeeccccCCCcCCCCCHHHHHHHHHHHhhcCCC---hHHHHhhCCCCCHHHHHHHHHHHHHHH
Q 020603           53 SGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNR---WSKIAQHLPGRTDNEIKNYWRTRVQKQ  124 (324)
Q Consensus        53 l~~~Rt~~QCr~Rw~n~L~p~ikkg~WT~EED~~Ll~lv~~~G~k---Ws~IA~~lpgRT~~qcknRW~~~lkk~  124 (324)
                      ++ ..+..+.+.++.+..........||.|||++||+.++++|.+   |..||+.|+||+++|||+||+.+++..
T Consensus        11 ~p-~~t~~~v~A~n~~~~s~G~~~~~WTrEEDriIL~~~q~~G~~~~tw~~Ia~~L~~Rs~~qvr~Rf~~Lm~lf   84 (95)
T d1ug2a_          11 LP-KASEATVCANNSKVSSTGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLF   84 (95)
T ss_dssp             CC-CCCCCCCCCCCCCCCCCCCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHH
T ss_pred             CC-CCCccccccccCccCCCCCccCCcCHHHHHHHHHHHHHcCCcHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence            44 567778888888888888888899999999999999999977   999999999999999999999988764

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

Probab=99.25  E-value=3.4e-13  Score=98.56  Aligned_cols=44  Identities=16%  Similarity=0.364  Sum_probs=40.8

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCC---hHHHHHHhCCCCCcccccceeec
Q 020603           24 GPWTLEEDTLLIQYISRHSEGR---WNLLAKRSGLKRTGKSCRLRWLN   68 (324)
Q Consensus        24 g~WT~EED~~L~~lV~k~G~~~---W~~IA~~l~~~Rt~~QCr~Rw~n   68 (324)
                      .+||+|||++|+++|++||.+.   |.+||..|+ +||..||+.||..
T Consensus         2 ~~WT~eEd~~L~~~v~~~~~~~~~~W~~Ia~~l~-gRt~~qc~~r~~~   48 (63)
T d2cjja1           2 RPWSAKENKAFERALAVYDKDTPDRWANVARAVE-GRTPEEVKKHYEI   48 (63)
T ss_dssp             CSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHST-TCCHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHCCCCchHHHHHHHHcC-CCCHHHHHHHHHH
Confidence            5799999999999999999754   999999999 9999999999954

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.25  E-value=4.9e-12  Score=97.17  Aligned_cols=51  Identities=22%  Similarity=0.396  Sum_probs=45.7

Q ss_pred             CCCHHHHHHHHHHHhhcC-CChHHHHhh----CCCCCHHHHHHHHHHHHHHHHHhc
Q 020603           78 NLTPQEQMSILELHSKWG-NRWSKIAQH----LPGRTDNEIKNYWRTRVQKQARHL  128 (324)
Q Consensus        78 ~WT~EED~~Ll~lv~~~G-~kWs~IA~~----lpgRT~~qcknRW~~~lkk~~r~~  128 (324)
                      +||.|||++|+++|.+|| ++|..|++.    +++||+.||++||+++|+......
T Consensus         2 ~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~~~Rt~~qck~RWrn~l~~~~~~~   57 (83)
T d2ckxa1           2 PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAP   57 (83)
T ss_dssp             CCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSCG
T ss_pred             CCCHHHHHHHHHHHHHHCcccHHHHHHHHHhhccCCCHHHHHHHHHHHhhhhccCc
Confidence            799999999999999999 589999985    689999999999999998765443

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=1.2e-11  Score=90.49  Aligned_cols=47  Identities=17%  Similarity=0.352  Sum_probs=43.8

Q ss_pred             CCCCCHHHHHHHHHHHhhcCCChHHHHhhCCCCCHHHHHHHHHHHHH
Q 020603           76 RGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQ  122 (324)
Q Consensus        76 kg~WT~EED~~Ll~lv~~~G~kWs~IA~~lpgRT~~qcknRW~~~lk  122 (324)
                      +..||++||++|++++.+||.+|..||++|+|||..||++||..+.+
T Consensus         5 ~~~WT~eE~~~f~~~~~~~G~~w~~Ia~~~~~kt~~q~~~~y~~~~k   51 (65)
T d2iw5b1           5 NARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRR   51 (65)
T ss_dssp             CSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTT
T ss_pred             CCCCCHHHHHHHHHHHHHhCchHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence            46799999999999999999999999999999999999999987643

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=1.3e-11  Score=91.11  Aligned_cols=46  Identities=20%  Similarity=0.152  Sum_probs=43.0

Q ss_pred             cCCCCCHHHHHHHHHHHhhcCCChHHHHhhCCCCCHHHHHHHHHHH
Q 020603           75 KRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTR  120 (324)
Q Consensus        75 kkg~WT~EED~~Ll~lv~~~G~kWs~IA~~lpgRT~~qcknRW~~~  120 (324)
                      ...+||+||+++|++++.+||.+|..||+.|+|||..||++||...
T Consensus        16 ~~~~WT~eE~~~f~~~~~~~G~~w~~Ia~~~~~rt~~q~~~~yy~~   61 (68)
T d1xc5a1          16 VMNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLT   61 (68)
T ss_dssp             TTTCCCTTTHHHHHHHHHHTTSCSSSHHHHTTTSCHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCcHHHHHHHcCCCCHHHHHHHHHHH
Confidence            4468999999999999999999999999999999999999999753

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=8.8e-11  Score=85.76  Aligned_cols=47  Identities=21%  Similarity=0.411  Sum_probs=43.4

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCChHHHHHHhCCCCCcccccceeecccc
Q 020603           23 RGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLK   71 (324)
Q Consensus        23 kg~WT~EED~~L~~lV~k~G~~~W~~IA~~l~~~Rt~~QCr~Rw~n~L~   71 (324)
                      ..+||++||++|.+++.+||. +|..||+.|+ +|+..||+.||.++.+
T Consensus         5 ~~~WT~eE~~~f~~~~~~~G~-~w~~Ia~~~~-~kt~~q~~~~y~~~~k   51 (65)
T d2iw5b1           5 NARWTTEEQLLAVQAIRKYGR-DFQAISDVIG-NKSVVQVKNFFVNYRR   51 (65)
T ss_dssp             CSSCCHHHHHHHHHHHHHHSS-CHHHHHHHHS-SCCHHHHHHHHHHTTT
T ss_pred             CCCCCHHHHHHHHHHHHHhCc-hHHHHHHHcC-CCCHHHHHHHHHHHHh
Confidence            467999999999999999996 8999999999 9999999999988653

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=8.9e-11  Score=86.54  Aligned_cols=51  Identities=18%  Similarity=0.295  Sum_probs=45.2

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhCCCCCcccccceeeccc
Q 020603           18 SDQLRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYL   70 (324)
Q Consensus        18 ~~~lkkg~WT~EED~~L~~lV~k~G~~~W~~IA~~l~~~Rt~~QCr~Rw~n~L   70 (324)
                      +......+||+|||++|+++|.+||. +|..||+.|+ +|+..||+.||....
T Consensus        12 ~~~~~~~~WT~eE~~~f~~~~~~~G~-~w~~Ia~~~~-~rt~~q~~~~yy~~k   62 (68)
T d1xc5a1          12 KDRQVMNMWSEQEKETFREKFMQHPK-NFGLIASFLE-RKTVAECVLYYYLTK   62 (68)
T ss_dssp             TSTTTTTCCCTTTHHHHHHHHHHTTS-CSSSHHHHTT-TSCHHHHHHHHHHHT
T ss_pred             ccccCCCCCCHHHHHHHHHHHHHHCC-cHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence            34456678999999999999999996 9999999999 999999999997543

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.88  E-value=5e-10  Score=87.70  Aligned_cols=59  Identities=14%  Similarity=0.271  Sum_probs=50.9

Q ss_pred             cccccCCCCCCCCCCCCHHHHHHHHHHHHHhCCCC--hHHHHHHhCCCCCcccccceeeccc
Q 020603           11 SIYGENDSDQLRRGPWTLEEDTLLIQYISRHSEGR--WNLLAKRSGLKRTGKSCRLRWLNYL   70 (324)
Q Consensus        11 s~~~~~~~~~lkkg~WT~EED~~L~~lV~k~G~~~--W~~IA~~l~~~Rt~~QCr~Rw~n~L   70 (324)
                      +.+.+..+.+.+...||.|||+.|++.++++|...  |..||+.|+ +|++.|||.||..++
T Consensus        21 A~n~~~~s~G~~~~~WTrEEDriIL~~~q~~G~~~~tw~~Ia~~L~-~Rs~~qvr~Rf~~Lm   81 (95)
T d1ug2a_          21 ANNSKVSSTGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLG-NKTPVEVSHRFRELM   81 (95)
T ss_dssp             CCCCCCCCCCCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHS-SCCHHHHHHHHHHHH
T ss_pred             cccCccCCCCCccCCcCHHHHHHHHHHHHHcCCcHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence            44455577788899999999999999999999632  999999999 999999999997644

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.18  E-value=1.5e-06  Score=61.46  Aligned_cols=43  Identities=23%  Similarity=0.369  Sum_probs=39.9

Q ss_pred             CCCCHHHHHHHHHHHhhcCCChHHHHhh-CCCCCHHHHHHHHHH
Q 020603           77 GNLTPQEQMSILELHSKWGNRWSKIAQH-LPGRTDNEIKNYWRT  119 (324)
Q Consensus        77 g~WT~EED~~Ll~lv~~~G~kWs~IA~~-lpgRT~~qcknRW~~  119 (324)
                      ..||+||..++.+++.+||.+|..|++. +|+||..||.+.|..
T Consensus         2 d~WT~eE~~~F~~~~~~yGKdf~~I~~~~v~~Ks~~~~v~fYY~   45 (57)
T d2crga1           2 EEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYM   45 (57)
T ss_dssp             CCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHcccHHHHHHHHcCCCCHHHHHHHHHH
Confidence            3699999999999999999999999985 699999999999874

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.18  E-value=9e-07  Score=63.31  Aligned_cols=44  Identities=23%  Similarity=0.376  Sum_probs=39.9

Q ss_pred             CCCCHHHHHHHHHHHhhcC----CChHHHHhhCCCCCHHHHHHHHHHHH
Q 020603           77 GNLTPQEQMSILELHSKWG----NRWSKIAQHLPGRTDNEIKNYWRTRV  121 (324)
Q Consensus        77 g~WT~EED~~Ll~lv~~~G----~kWs~IA~~lpgRT~~qcknRW~~~l  121 (324)
                      +.||.||+.+|.+++.+|.    .+|.+||..+ |||..+|..||+.+.
T Consensus         2 ~eWT~ee~~~le~Al~~~P~gt~~RW~~IA~~v-gkt~~ev~~~~k~l~   49 (59)
T d2cqqa1           2 PEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLK   49 (59)
T ss_dssp             CCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHH-CCCHHHHHHHHHHHH
Confidence            4799999999999999997    4699999999 999999999997643

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.02  E-value=8.9e-07  Score=63.33  Aligned_cols=45  Identities=22%  Similarity=0.396  Sum_probs=39.9

Q ss_pred             CCCCHHHHHHHHHHHHHhCCC---ChHHHHHHhCCCCCcccccceeeccc
Q 020603           24 GPWTLEEDTLLIQYISRHSEG---RWNLLAKRSGLKRTGKSCRLRWLNYL   70 (324)
Q Consensus        24 g~WT~EED~~L~~lV~k~G~~---~W~~IA~~l~~~Rt~~QCr~Rw~n~L   70 (324)
                      +.||.||+.+|.+++.+|..+   +|.+||+.++  |+..+|..||..+-
T Consensus         2 ~eWT~ee~~~le~Al~~~P~gt~~RW~~IA~~vg--kt~~ev~~~~k~l~   49 (59)
T d2cqqa1           2 PEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHELG--RSVTDVTTKAKQLK   49 (59)
T ss_dssp             CCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHHT--SCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHC--CCHHHHHHHHHHHH
Confidence            579999999999999999754   6999999995  99999999997543

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.73  E-value=7.6e-06  Score=57.73  Aligned_cols=42  Identities=12%  Similarity=0.162  Sum_probs=38.3

Q ss_pred             CCCHHHHHHHHHHHHHhCCCChHHHHHH-hCCCCCcccccceeec
Q 020603           25 PWTLEEDTLLIQYISRHSEGRWNLLAKR-SGLKRTGKSCRLRWLN   68 (324)
Q Consensus        25 ~WT~EED~~L~~lV~k~G~~~W~~IA~~-l~~~Rt~~QCr~Rw~n   68 (324)
                      .||+||-+++.+++..||. +|..|++. ++ +|+..||...|..
T Consensus         3 ~WT~eE~~~F~~~~~~yGK-df~~I~~~~v~-~Ks~~~~v~fYY~   45 (57)
T d2crga1           3 EWSASEACLFEEALEKYGK-DFNDIRQDFLP-WKSLTSIIEYYYM   45 (57)
T ss_dssp             CCCHHHHHHHHHHHHHTCS-CHHHHHHTTCS-SSCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHcc-cHHHHHHHHcC-CCCHHHHHHHHHH
Confidence            6999999999999999997 99999986 57 9999999997754

>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Hypothetical protein 4930532d21rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.43  E-value=0.0002  Score=47.75  Aligned_cols=45  Identities=18%  Similarity=0.360  Sum_probs=40.5

Q ss_pred             CCCCHHHHHHHHHHHhhcCCChHHHHhhC---CCCCHHHHHHHHHHHH
Q 020603           77 GNLTPQEQMSILELHSKWGNRWSKIAQHL---PGRTDNEIKNYWRTRV  121 (324)
Q Consensus        77 g~WT~EED~~Ll~lv~~~G~kWs~IA~~l---pgRT~~qcknRW~~~l  121 (324)
                      ..||+||-.-|+..|+++|+.|..|--.+   +||+..++..+|..++
T Consensus         2 knft~eEv~YL~~GVK~~G~~WNsILWs~PF~~GR~~vdLA~Ky~~l~   49 (49)
T d1x58a1           2 KDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLI   49 (49)
T ss_dssp             SSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHhcchhhhhhhccCCCCCchhhHHHHHHHhhC
Confidence            47999999999999999999999997755   8999999999998753

>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Rap1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.20  E-value=0.00023  Score=50.44  Aligned_cols=47  Identities=15%  Similarity=0.324  Sum_probs=40.2

Q ss_pred             CCCCCHHHHHHHHHHHhhcC-------CC--hHHHHh-hCCCCCHHHHHHHHHHHHH
Q 020603           76 RGNLTPQEQMSILELHSKWG-------NR--WSKIAQ-HLPGRTDNEIKNYWRTRVQ  122 (324)
Q Consensus        76 kg~WT~EED~~Ll~lv~~~G-------~k--Ws~IA~-~lpgRT~~qcknRW~~~lk  122 (324)
                      +.+||.|||+.|++.|.++.       ++  |.++++ .++.+|-...|+||...|+
T Consensus         2 R~~fT~eeD~~l~~yv~~~~~~~~~~~Gn~iwk~l~~~~~~~HtwQSwrdRY~K~L~   58 (59)
T d1fexa_           2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccCcCCccHHHHHHHHHHhcCCCCCHHHHHHHHHHHhc
Confidence            45899999999999998874       22  999996 6799999999999987664

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.14  E-value=0.0005  Score=49.39  Aligned_cols=47  Identities=15%  Similarity=0.045  Sum_probs=40.1

Q ss_pred             CCCCCHHHHHHHHHHHhhcCCCh---HHHHhhC--CCCCHHHHHHHHHHHHH
Q 020603           76 RGNLTPQEQMSILELHSKWGNRW---SKIAQHL--PGRTDNEIKNYWRTRVQ  122 (324)
Q Consensus        76 kg~WT~EED~~Ll~lv~~~G~kW---s~IA~~l--pgRT~~qcknRW~~~lk  122 (324)
                      +-.||+||.++.++++.++|..|   ..|.+.|  +|+|..||+.+.+.+.-
T Consensus         7 R~~WT~elH~~Fv~Av~~lG~~~atpk~I~~~m~v~~lT~~qV~SHlQKYrl   58 (64)
T d1irza_           7 RVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRV   58 (64)
T ss_dssp             SCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCccccchHHHHHHcCCCCCCHHHHHHHHHHHHH
Confidence            45799999999999999999887   4777764  89999999999887643

>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Rap1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.80  E-value=0.00037  Score=49.32  Aligned_cols=48  Identities=21%  Similarity=0.430  Sum_probs=40.5

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCC--------ChHHHHH-HhCCCCCcccccceeecccc
Q 020603           23 RGPWTLEEDTLLIQYISRHSEG--------RWNLLAK-RSGLKRTGKSCRLRWLNYLK   71 (324)
Q Consensus        23 kg~WT~EED~~L~~lV~k~G~~--------~W~~IA~-~l~~~Rt~~QCr~Rw~n~L~   71 (324)
                      |.+||.|||+.|++.|.++...        =|..+++ .++ .+|-.+-|+||.++|+
T Consensus         2 R~~fT~eeD~~l~~yv~~~~~~~~~~~Gn~iwk~l~~~~~~-~HtwQSwrdRY~K~L~   58 (59)
T d1fexa_           2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLT-QHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSS-SCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccCcCCccHHHHHHHHHHhcCC-CCCHHHHHHHHHHHhc
Confidence            5789999999999999998431        3999996 566 8999999999998875

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.25  E-value=0.0015  Score=46.76  Aligned_cols=50  Identities=14%  Similarity=0.142  Sum_probs=38.7

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCCh--HHHHHHhCC-CCCcccccceeecc
Q 020603           20 QLRRGPWTLEEDTLLIQYISRHSEGRW--NLLAKRSGL-KRTGKSCRLRWLNY   69 (324)
Q Consensus        20 ~lkkg~WT~EED~~L~~lV~k~G~~~W--~~IA~~l~~-~Rt~~QCr~Rw~n~   69 (324)
                      +..+-.||+||.++++++|+.+|.+.|  ..|.+.|+. ++|..||+.|.+.|
T Consensus         4 kk~R~~WT~elH~~Fv~Av~~lG~~~atpk~I~~~m~v~~lT~~qV~SHlQKY   56 (64)
T d1irza_           4 KKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKF   56 (64)
T ss_dssp             CCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCccccchHHHHHHcCCCCCCHHHHHHHHHHH
Confidence            345678999999999999999997544  678887742 67888988765543

>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Hypothetical protein C14orf106 (KIAA1903)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.87  E-value=0.003  Score=45.68  Aligned_cols=50  Identities=18%  Similarity=0.362  Sum_probs=43.2

Q ss_pred             CCCCCCHHHHHHHHHHHHHhC---CCChHHHHHHhCCCCCcccccceeeccccC
Q 020603           22 RRGPWTLEEDTLLIQYISRHS---EGRWNLLAKRSGLKRTGKSCRLRWLNYLKP   72 (324)
Q Consensus        22 kkg~WT~EED~~L~~lV~k~G---~~~W~~IA~~l~~~Rt~~QCr~Rw~n~L~p   72 (324)
                      .-+.|+++|-++|-.++....   .+-|..||..++ .|++..|..+|...+..
T Consensus         7 ~d~~W~e~ELqkLh~A~~SlPkh~~gfW~~VA~~VG-tRSaeECQ~ky~~~~~~   59 (73)
T d1wgxa_           7 GDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVG-SRSPEECQRKYMENPRG   59 (73)
T ss_dssp             SSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTT-TSCHHHHHHHHHHSSSS
T ss_pred             cccccCHHHHHHHHHHHHhcCCCCCccHHHHHHHHc-cCCHHHHHHHHHhCccc
Confidence            346899999999999998765   467999999999 99999999999887654

>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Hypothetical protein C14orf106 (KIAA1903)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.67  E-value=0.018  Score=41.49  Aligned_cols=48  Identities=13%  Similarity=0.216  Sum_probs=41.9

Q ss_pred             cCCCCCHHHHHHHHHHHhhcCCC----hHHHHhhCCCCCHHHHHHHHHHHHH
Q 020603           75 KRGNLTPQEQMSILELHSKWGNR----WSKIAQHLPGRTDNEIKNYWRTRVQ  122 (324)
Q Consensus        75 kkg~WT~EED~~Ll~lv~~~G~k----Ws~IA~~lpgRT~~qcknRW~~~lk  122 (324)
                      ..+.|+++|-.+|-.++..+...    |..||..+..|++..|..+|..-++
T Consensus         7 ~d~~W~e~ELqkLh~A~~SlPkh~~gfW~~VA~~VGtRSaeECQ~ky~~~~~   58 (73)
T d1wgxa_           7 GDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPR   58 (73)
T ss_dssp             SSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSS
T ss_pred             cccccCHHHHHHHHHHHHhcCCCCCccHHHHHHHHccCCHHHHHHHHHhCcc
Confidence            45689999999999999888743    9999999999999999999987543

>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Hypothetical protein 4930532d21rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.77  E-value=0.0092  Score=39.55  Aligned_cols=45  Identities=18%  Similarity=0.245  Sum_probs=37.1

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCChHHHHHHhCC--CCCcccccceeec
Q 020603           23 RGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGL--KRTGKSCRLRWLN   68 (324)
Q Consensus        23 kg~WT~EED~~L~~lV~k~G~~~W~~IA~~l~~--~Rt~~QCr~Rw~n   68 (324)
                      |..||.||-.-|...|+++|. .|+.|-=.+|+  ||+......+|..
T Consensus         1 Rknft~eEv~YL~~GVK~~G~-~WNsILWs~PF~~GR~~vdLA~Ky~~   47 (49)
T d1x58a1           1 RKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQKGRRAVDLAHKYHR   47 (49)
T ss_dssp             SSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCTTCCHHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHhcc-hhhhhhhccCCCCCchhhHHHHHHHh
Confidence            467999999999999999997 99999877653  7887776666643

>d1ofcx2 a.4.1.13 (X:851-978) SLIDE domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: SLIDE domain
domain: SLIDE domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=92.63  E-value=0.12  Score=41.26  Aligned_cols=55  Identities=20%  Similarity=0.273  Sum_probs=44.5

Q ss_pred             CCcCCCCCHHHHHHHHHHHhhcC-CC---hHHHHhh------------CCCCCHHHHHHHHHHHHHHHHHh
Q 020603           73 DVKRGNLTPQEQMSILELHSKWG-NR---WSKIAQH------------LPGRTDNEIKNYWRTRVQKQARH  127 (324)
Q Consensus        73 ~ikkg~WT~EED~~Ll~lv~~~G-~k---Ws~IA~~------------lpgRT~~qcknRW~~~lkk~~r~  127 (324)
                      ..++..+|+|||.-|+-++.+|| ++   |..|-..            |..||+..|..|...+++-..+.
T Consensus        46 ~nk~k~yteeEDRfLl~~~~~~G~~~~~~~e~ir~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~~i~kE  116 (128)
T d1ofcx2          46 NNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTLITLIERE  116 (128)
T ss_dssp             TCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCCccCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHhCcchhhhhHhccCCHHHHHHHHHHHHHHHHHH
Confidence            44555799999999999999999 55   9887532            35799999999999998876543

>d1ofcx1 a.4.1.3 (X:799-850) SANT domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: SANT domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=89.87  E-value=0.39  Score=32.40  Aligned_cols=42  Identities=21%  Similarity=0.412  Sum_probs=37.6

Q ss_pred             CCCHHHHHHHHHHHhhcC-CChHHHHhhCCCCCHHHHHHHHHH
Q 020603           78 NLTPQEQMSILELHSKWG-NRWSKIAQHLPGRTDNEIKNYWRT  119 (324)
Q Consensus        78 ~WT~EED~~Ll~lv~~~G-~kWs~IA~~lpgRT~~qcknRW~~  119 (324)
                      .|+.-|=..++.+..+|| .+-..||..|.|+|..+|+...+.
T Consensus         1 ~WnrrdF~~Fi~a~ekyGR~d~~~Ia~e~~~Kt~eEV~~Y~~v   43 (52)
T d1ofcx1           1 AWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAV   43 (52)
T ss_dssp             TCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHhhHHHHHHHhcCCCHHHHHHHHHH
Confidence            389999999999999999 579999999999999999876554