Citrus Sinensis ID: 020637

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320---
Protein Sequence
MYNSGLNTGHENSGVVGSILVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGVVNCVYIAVPQPDMVPNTISPETSGNMEVDDVVMRPEGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCKHFLHSLGKEL
Secondary Structure (PSIPRED)
ccccccccccccccccccccEEEEEEEcccccEEEEEEcccccccccccccccccccEEEEEEEcccEEEEEEEEEccEEEEcccccEEcccccEEEEEEEccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccEEEEccHHHHHHHHHHHHHcccccccccccccccEEEEEcHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccEEEcccccHHHHHHHHHHcccEEEEEEEccccccccccEEEEEEHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccEEEEEEEEEEEEcccccEEEEEEcccccccccccccccccccEEEEEEEcccccEEEEEEEccEEEccccccccccccccEcEEEEEcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccEEEcccccEEEEEEccHHHHHHHHHHHHcccEEccccccccccEEEEEEHHHHHHHHHHHHcccccccHHHHHHccHHHHHHHHHHHcHHHHHHHHcccccccEEEEcccHHHHHHHHHHHHHccccccEEcccccccccccEEEEEcHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mynsglntghensgvvgsilvpvrfiwpnggrrvslsgsftrwsepmpmspsegcpavfqiicrlppghhqykfyvdgewrhdenqphvsgnygvVNCVYIavpqpdmvpntispetsgnmevddvvmrpegfaqySEADLQLSRDRISSFLSTHTVYEllpdsgkvtaLDVNLAVKQAFHVLYeqglpmvplwddfkgRFVGVLSALDFILILRElgtngsnlteeeLETHTISAWKVGKLQLNLKrqmdgngrpcprplvqagpydsLKEVALKILQnkvatvpiihstgpagscQEILYLASLSDILKCKHFLHSLGKEL
Flexible Loop (DISEMBL)
mynsglntghensgvvGSILVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGVVNCVYIAVPQPDMVPNTISPETSGNMEVDDVVMRPEGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCKHFLHSLGKEL
Low Complexity Region (SEG)
MYNSGLNTGHENSGVVGSILVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGVVNCVYIAVPQPDMVPNTISPETSGNMEVDDVVMRPEGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCKHFLHSLGKEL
Disordered region (IsUnstruct)
*************GVVGSILVPVRFIWPNGGRRVSLSGSFTRW**********GCPAVFQIICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGVVNCVYIAVPQ***************************FAQY**ADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKR**********RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCKHFLHS*****
Disordered Region (DISOPRED)
********************VPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGVVNCVYIAVPQPDMVPNTISPETSGNMEVDDVVMRPEGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGN*RPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCKHFLHSLGKE*
Disordered Region (DISEMBL)
*********HENSGVVGSILVPVRFIWPNGGRRVSLSGSFTRW*********EGCPAVFQIICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGVVNCVYIAVPQPDMVPNTISPETSGNMEVDDVVMRPEGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCKHFLHSLGKEL
Disordered Region (DISPRO)
************SGVVGSILVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGVVNCVYIAVPQPDMVPNTISPE*SGNMEVDDVV*****FAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCKHFLHSLGKEL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MYNSGLNTGHENSGVVGSILVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGVVNCVYIAVPQPDMVPNTISPETSGNMEVDDVVMRPEGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCKHFLHSLGKEL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	323	2.2.26 [Sep-21-2011]
Q944A6	487	Sucrose nonfermenting 4-l	yes	no	0.972	0.644	0.660	1e-118
Q8BGM7	489	5'-AMP-activated protein	yes	no	0.467	0.308	0.321	2e-15
Q9MYP4	514	5'-AMP-activated protein	yes	no	0.467	0.293	0.321	3e-15
Q2LL38	497	5'-AMP-activated protein	yes	no	0.467	0.303	0.316	4e-15
Q9UGI9	489	5'-AMP-activated protein	yes	no	0.464	0.306	0.311	5e-15
P58108	330	5'-AMP-activated protein	no	no	0.393	0.384	0.35	6e-15
Q09138	330	5'-AMP-activated protein	no	no	0.393	0.384	0.35	6e-15
O54950	330	5'-AMP-activated protein	no	no	0.393	0.384	0.35	6e-15
P54619	331	5'-AMP-activated protein	no	no	0.393	0.383	0.35	6e-15
P80385	330	5'-AMP-activated protein	no	no	0.393	0.384	0.342	1e-14

>sp|Q944A6|SNF4_ARATH Sucrose nonfermenting 4-like protein OS=Arabidopsis thaliana GN=SNF4 PE=1 SV=1

 Score =  426 bits (1096), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 216/327 (66%), Positives = 253/327 (77%), Gaps = 13/327 (3%)

Query: 1   MYNSGLNTGHENSGVVGSILVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQ 60
           M+ S L++   NS   G +L P RF+WP GGRRV LSGSFTRW+E +PMSP EGCP VFQ
Sbjct: 1   MFGSTLDSSRGNSAASGQLLTPTRFVWPYGGRRVFLSGSFTRWTEHVPMSPLEGCPTVFQ 60

Query: 61  IICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGVVNCVYIAVPQPDMVPNTISPETSG- 119
           +IC L PG+HQYKF+VDGEWRHDE+QP VSGN GVVN ++I    PDMVP   SPET G 
Sbjct: 61  VICNLTPGYHQYKFFVDGEWRHDEHQPFVSGNGGVVNTIFIT--GPDMVPAGFSPETLGR 118

Query: 120 -NMEVDDVVMRP-----EGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVN 173
            NM+VDDV +R      E   + S  DL+LSR RIS  LST T YELLP+SGKV ALDVN
Sbjct: 119 SNMDVDDVFLRTADPSQEAVPRMSGVDLELSRHRISVLLSTRTAYELLPESGKVIALDVN 178

Query: 174 LAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHT 233
           L VKQAFH+LYEQG+P+ PLWD  KG+FVGVL  LDFILILRELGT+GSNLTEEELETHT
Sbjct: 179 LPVKQAFHILYEQGIPLAPLWDFGKGQFVGVLGPLDFILILRELGTHGSNLTEEELETHT 238

Query: 234 ISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGP 293
           I+AWK GK  ++  RQ DG+GRP PRPLVQ GPYD+LK+VALKILQNKVA VP+I+S+  
Sbjct: 239 IAAWKEGKAHIS--RQYDGSGRPYPRPLVQVGPYDNLKDVALKILQNKVAAVPVIYSSLQ 296

Query: 294 AGSCQEILYLASLSDILK--CKHFLHS 318
            GS  ++L+LASLS ILK  C++F HS
Sbjct: 297 DGSYPQLLHLASLSGILKCICRYFRHS 323

Regulatory subunit of the probable trimeric SNF1-related protein kinase (SnRK) complex, which may play a role in a signal transduction cascade regulating gene expression and carbohydrate metabolism in higher plants.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8BGM7|AAKG3_MOUSE 5'-AMP-activated protein kinase subunit gamma-3 OS=Mus musculus GN=Prkag3 PE=1 SV=1

 Score = 83.6 bits (205), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/174 (32%), Positives = 85/174 (48%), Gaps = 23/174 (13%)

Query: 151 FLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDF 210
           F+  HT Y+ +  S K+   D  L +K+AF  +   G+   PLWD  K  FVG+L+  DF
Sbjct: 187 FMQEHTCYDAMATSSKLVIFDTTLEIKKAFFAMVANGVRAAPLWDSKKQSFVGMLTITDF 246

Query: 211 ILILRELGTNGSNLTE-EELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDS 269
           IL+L       S L +  E+E H I  W+   LQ             C +PLV   P DS
Sbjct: 247 ILVLHRY--YRSPLVQIYEIEEHKIETWREIYLQ------------GCFKPLVSISPNDS 292

Query: 270 LKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCKHFLHSLGKEL 323
           L E    +++N++  +P++     +G+   +LY+ +   +LK   FLH  G  L
Sbjct: 293 LFEAVYALIKNRIHRLPVLDPV--SGT---VLYILTHKRLLK---FLHIFGALL 338

AMP/ATP-binding subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Gamma non-catalytic subunit mediates binding to AMP, ADP and ATP, leading to activate or inhibit AMPK: AMP-binding results in allosteric activation of alpha catalytic subunit (PRKAA1 or PRKAA2) both by inducing phosphorylation and preventing dephosphorylation of catalytic subunits. ADP also stimulates phosphorylation, without stimulating already phosphorylated catalytic subunit. ATP promotes dephosphorylation of catalytic subunit, rendering the AMPK enzyme inactive.

Mus musculus (taxid: 10090)

>sp|Q9MYP4|AAKG3_PIG 5'-AMP-activated protein kinase subunit gamma-3 OS=Sus scrofa GN=PRKAG3 PE=1 SV=2

 Score = 83.2 bits (204), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 56/174 (32%), Positives = 83/174 (47%), Gaps = 23/174 (13%)

Query: 151 FLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDF 210
           F+  HT Y+ +  S K+   D  L +K+AF  L   G+   PLWD  K  FVG+L+  DF
Sbjct: 212 FMQEHTCYDAMATSSKLVIFDTMLEIKKAFFALVANGVRAAPLWDSKKQSFVGMLTITDF 271

Query: 211 ILILRELGTNGSNLTE-EELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDS 269
           IL+L       S L +  E+E H I  W+   LQ             C +PLV   P DS
Sbjct: 272 ILVLHRY--YRSPLVQIYEIEEHKIETWREIYLQ------------GCFKPLVSISPNDS 317

Query: 270 LKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCKHFLHSLGKEL 323
           L E    +++N++  +P++     A     +L++ +   +LK   FLH  G  L
Sbjct: 318 LFEAVYALIKNRIHRLPVLDPVSGA-----VLHILTHKRLLK---FLHIFGTLL 363

AMP/ATP-binding subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Gamma non-catalytic subunit mediates binding to AMP, ADP and ATP, leading to activate or inhibit AMPK: AMP-binding results in allosteric activation of alpha catalytic subunit (PRKAA1 or PRKAA2) both by inducing phosphorylation and preventing dephosphorylation of catalytic subunits. ADP also stimulates phosphorylation, without stimulating already phosphorylated catalytic subunit. ATP promotes dephosphorylation of catalytic subunit, rendering the AMPK enzyme inactive.

Sus scrofa (taxid: 9823)

>sp|Q2LL38|AAKG3_BOVIN 5'-AMP-activated protein kinase subunit gamma-3 OS=Bos taurus GN=PRKAG3 PE=2 SV=2

 Score = 82.4 bits (202), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 55/174 (31%), Positives = 83/174 (47%), Gaps = 23/174 (13%)

Query: 151 FLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDF 210
           F+  HT Y+ +  S K+   D  L +K+AF  L   G+   PLWD  K  FVG+L+  DF
Sbjct: 194 FMQEHTCYDAMATSSKLVIFDTMLQIKKAFFALVANGVRAAPLWDSKKQSFVGMLTITDF 253

Query: 211 ILILRELGTNGSNLTE-EELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDS 269
           IL+L       S L +  E+E H I  W+   LQ             C +PLV   P DS
Sbjct: 254 ILVLHRY--YRSPLVQIYEIEEHKIETWREIYLQ------------GCFKPLVSISPSDS 299

Query: 270 LKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCKHFLHSLGKEL 323
           L E    +++N++  +P++     A     +L++ +   +LK   FLH   + L
Sbjct: 300 LFEAVYTLIKNRIHRLPVLDPVSGA-----VLHILTHKRLLK---FLHIFQRTL 345

AMP/ATP-binding subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Gamma non-catalytic subunit mediates binding to AMP, ADP and ATP, leading to activate or inhibit AMPK: AMP-binding results in allosteric activation of alpha catalytic subunit (PRKAA1 or PRKAA2) both by inducing phosphorylation and preventing dephosphorylation of catalytic subunits. ADP also stimulates phosphorylation, without stimulating already phosphorylated catalytic subunit. ATP promotes dephosphorylation of catalytic subunit, rendering the AMPK enzyme inactive.

Bos taurus (taxid: 9913)

>sp|Q9UGI9|AAKG3_HUMAN 5'-AMP-activated protein kinase subunit gamma-3 OS=Homo sapiens GN=PRKAG3 PE=1 SV=3

 Score = 82.0 bits (201), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 80/170 (47%), Gaps = 20/170 (11%)

Query: 151 FLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDF 210
           F+  HT Y+ +  S K+   D  L +K+AF  L   G+   PLWD  K  FVG+L+  DF
Sbjct: 187 FMQEHTCYDAMATSSKLVIFDTMLEIKKAFFALVANGVRAAPLWDSKKQSFVGMLTITDF 246

Query: 211 ILILRELGTNGSNLTE-EELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDS 269
           IL+L       S L +  E+E H I  W+   LQ             C +PLV   P DS
Sbjct: 247 ILVLHRY--YRSPLVQIYEIEQHKIETWREIYLQ------------GCFKPLVSISPNDS 292

Query: 270 LKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCKHFLHSL 319
           L E    +++N++  +P++           +L++ +   +LK  H   SL
Sbjct: 293 LFEAVYTLIKNRIHRLPVLDPVS-----GNVLHILTHKRLLKFLHIFGSL 337

AMP/ATP-binding subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Gamma non-catalytic subunit mediates binding to AMP, ADP and ATP, leading to activate or inhibit AMPK: AMP-binding results in allosteric activation of alpha catalytic subunit (PRKAA1 or PRKAA2) both by inducing phosphorylation and preventing dephosphorylation of catalytic subunits. ADP also stimulates phosphorylation, without stimulating already phosphorylated catalytic subunit. ATP promotes dephosphorylation of catalytic subunit, rendering the AMPK enzyme inactive.

Homo sapiens (taxid: 9606)

>sp|P58108|AAKG1_BOVIN 5'-AMP-activated protein kinase subunit gamma-1 OS=Bos taurus GN=PRKAG1 PE=2 SV=2

 Score = 82.0 bits (201), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 49/140 (35%), Positives = 71/140 (50%), Gaps = 13/140 (9%)

Query: 149 SSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSAL 208
           +SF+ +H  Y+L+P S K+   D +L VK+AF  L   G+   PLWD  K  FVG+L+  
Sbjct: 30  TSFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTIT 89

Query: 209 DFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYD 268
           DFI IL       + +   ELE H I  W+   LQ + K            PLV   P  
Sbjct: 90  DFINILHRY-YKSALVQIYELEEHKIETWREVYLQDSFK------------PLVCISPNA 136

Query: 269 SLKEVALKILQNKVATVPII 288
           SL +    +++NK+  +P+I
Sbjct: 137 SLFDAVSSLIRNKIHRLPVI 156

AMP/ATP-binding subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Gamma non-catalytic subunit mediates binding to AMP, ADP and ATP, leading to activate or inhibit AMPK: AMP-binding results in allosteric activation of alpha catalytic subunit (PRKAA1 or PRKAA2) both by inducing phosphorylation and preventing dephosphorylation of catalytic subunits. ADP also stimulates phosphorylation, without stimulating already phosphorylated catalytic subunit. ATP promotes dephosphorylation of catalytic subunit, rendering the AMPK enzyme inactive.

Bos taurus (taxid: 9913)

>sp|Q09138|AAKG1_PIG 5'-AMP-activated protein kinase subunit gamma-1 OS=Sus scrofa GN=PRKAG1 PE=1 SV=2

 Score = 82.0 bits (201), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 49/140 (35%), Positives = 71/140 (50%), Gaps = 13/140 (9%)

Query: 149 SSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSAL 208
           +SF+ +H  Y+L+P S K+   D +L VK+AF  L   G+   PLWD  K  FVG+L+  
Sbjct: 30  TSFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTIT 89

Query: 209 DFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYD 268
           DFI IL       + +   ELE H I  W+   LQ + K            PLV   P  
Sbjct: 90  DFINILHRY-YKSALVQIYELEEHKIETWREVYLQDSFK------------PLVCISPNA 136

Query: 269 SLKEVALKILQNKVATVPII 288
           SL +    +++NK+  +P+I
Sbjct: 137 SLFDAVSSLIRNKIHRLPVI 156

AMP/ATP-binding subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Gamma non-catalytic subunit mediates binding to AMP, ADP and ATP, leading to activate or inhibit AMPK: AMP-binding results in allosteric activation of alpha catalytic subunit (PRKAA1 or PRKAA2) both by inducing phosphorylation and preventing dephosphorylation of catalytic subunits. ADP also stimulates phosphorylation, without stimulating already phosphorylated catalytic subunit. ATP promotes dephosphorylation of catalytic subunit, rendering the AMPK enzyme inactive.

Sus scrofa (taxid: 9823)

>sp|O54950|AAKG1_MOUSE 5'-AMP-activated protein kinase subunit gamma-1 OS=Mus musculus GN=Prkag1 PE=1 SV=2

 Score = 82.0 bits (201), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 49/140 (35%), Positives = 71/140 (50%), Gaps = 13/140 (9%)

Query: 149 SSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSAL 208
           +SF+ +H  Y+L+P S K+   D +L VK+AF  L   G+   PLWD  K  FVG+L+  
Sbjct: 29  TSFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTIT 88

Query: 209 DFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYD 268
           DFI IL       + +   ELE H I  W+   LQ + K            PLV   P  
Sbjct: 89  DFINILHRY-YKSALVQIYELEEHKIETWREVYLQDSFK------------PLVCISPNA 135

Query: 269 SLKEVALKILQNKVATVPII 288
           SL +    +++NK+  +P+I
Sbjct: 136 SLFDAVSSLIRNKIHRLPVI 155

AMP/ATP-binding subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Gamma non-catalytic subunit mediates binding to AMP, ADP and ATP, leading to activate or inhibit AMPK: AMP-binding results in allosteric activation of alpha catalytic subunit (PRKAA1 or PRKAA2) both by inducing phosphorylation and preventing dephosphorylation of catalytic subunits. ADP also stimulates phosphorylation, without stimulating already phosphorylated catalytic subunit. ATP promotes dephosphorylation of catalytic subunit, rendering the AMPK enzyme inactive.

Mus musculus (taxid: 10090)

>sp|P54619|AAKG1_HUMAN 5'-AMP-activated protein kinase subunit gamma-1 OS=Homo sapiens GN=PRKAG1 PE=1 SV=1

 Score = 82.0 bits (201), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 49/140 (35%), Positives = 71/140 (50%), Gaps = 13/140 (9%)

Query: 149 SSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSAL 208
           +SF+ +H  Y+L+P S K+   D +L VK+AF  L   G+   PLWD  K  FVG+L+  
Sbjct: 30  TSFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTIT 89

Query: 209 DFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYD 268
           DFI IL       + +   ELE H I  W+   LQ + K            PLV   P  
Sbjct: 90  DFINILHRY-YKSALVQIYELEEHKIETWREVYLQDSFK------------PLVCISPNA 136

Query: 269 SLKEVALKILQNKVATVPII 288
           SL +    +++NK+  +P+I
Sbjct: 137 SLFDAVSSLIRNKIHRLPVI 156

AMP/ATP-binding subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Gamma non-catalytic subunit mediates binding to AMP, ADP and ATP, leading to activate or inhibit AMPK: AMP-binding results in allosteric activation of alpha catalytic subunit (PRKAA1 or PRKAA2) both by inducing phosphorylation and preventing dephosphorylation of catalytic subunits. ADP also stimulates phosphorylation, without stimulating already phosphorylated catalytic subunit. ATP promotes dephosphorylation of catalytic subunit, rendering the AMPK enzyme inactive.

Homo sapiens (taxid: 9606)

>sp|P80385|AAKG1_RAT 5'-AMP-activated protein kinase subunit gamma-1 OS=Rattus norvegicus GN=Prkag1 PE=1 SV=3

 Score = 81.3 bits (199), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 48/140 (34%), Positives = 71/140 (50%), Gaps = 13/140 (9%)

Query: 149 SSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSAL 208
           ++F+ +H  Y+L+P S K+   D +L VK+AF  L   G+   PLWD  K  FVG+L+  
Sbjct: 29  TTFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTIT 88

Query: 209 DFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYD 268
           DFI IL       + +   ELE H I  W+   LQ + K            PLV   P  
Sbjct: 89  DFINILHRY-YKSALVQIYELEEHKIETWREVYLQDSFK------------PLVCISPNA 135

Query: 269 SLKEVALKILQNKVATVPII 288
           SL +    +++NK+  +P+I
Sbjct: 136 SLFDAVSSLIRNKIHRLPVI 155

AMP/ATP-binding subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Gamma non-catalytic subunit mediates binding to AMP, ADP and ATP, leading to activate or inhibit AMPK: AMP-binding results in allosteric activation of alpha catalytic subunit (PRKAA1 or PRKAA2) both by inducing phosphorylation and preventing dephosphorylation of catalytic subunits. ADP also stimulates phosphorylation, without stimulating already phosphorylated catalytic subunit. ATP promotes dephosphorylation of catalytic subunit, rendering the AMPK enzyme inactive.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	323
359487759	482	PREDICTED: sucrose nonfermenting 4-like	0.972	0.651	0.690	1e-121
225450904	488	PREDICTED: sucrose nonfermenting 4-like	0.969	0.641	0.672	1e-120
255542654	540	AMP-activated protein kinase, gamma regu	0.959	0.574	0.676	1e-118
18390971	487	sucrose nonfermenting 4-like protein [Ar	0.972	0.644	0.660	1e-117
297849192	479	hypothetical protein ARALYDRAFT_470981 [	0.962	0.649	0.667	1e-116
75037079	394	AKINbetagammaI [Arabidopsis thaliana]	0.972	0.796	0.660	1e-116
312281727	487	unnamed protein product [Thellungiella h	0.972	0.644	0.645	1e-113
225432326	491	PREDICTED: sucrose nonfermenting 4-like	0.975	0.641	0.617	1e-110
224123752	475	predicted protein [Populus trichocarpa]	0.962	0.654	0.627	1e-107
356556126	491	PREDICTED: sucrose nonfermenting 4-like	0.972	0.639	0.590	1e-105

>gi|359487759|ref|XP_003633645.1| PREDICTED: sucrose nonfermenting 4-like protein-like isoform 2 [Vitis vinifera] gi|296088362|emb|CBI36807.3| unnamed protein product [Vitis vinifera]

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 223/323 (69%), Positives = 259/323 (80%), Gaps = 9/323 (2%)

Query: 1   MYNSGLNTGHENSGVVGSILVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQ 60
           M+ SG  +GHENS + G++L+P RF+WP GGRRV LSGSFTRWSE +PMSP EGCP VFQ
Sbjct: 1   MFVSGAESGHENSAIPGTVLIPTRFVWPYGGRRVLLSGSFTRWSEHIPMSPIEGCPTVFQ 60

Query: 61  IICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGVVNCVYIAVPQPDMVPNTISPETSG- 119
           +I  L PG+HQYKF+VDGEWRHDE+QP VSGNYGVVN +++   +PD+VP   SP+T G 
Sbjct: 61  VIWSLAPGYHQYKFFVDGEWRHDEHQPFVSGNYGVVNTIFLPR-EPDVVPAVFSPDTPGG 119

Query: 120 -NMEVD-DVVMRPEGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVK 177
            NM++D D   R E   + SEADL++SR R+S FLSTH  YELLP+SGKV ALDVNL VK
Sbjct: 120 SNMDLDNDPFPRGEVIPRISEADLEVSRHRVSEFLSTHIAYELLPESGKVIALDVNLPVK 179

Query: 178 QAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAW 237
           QAFH LYEQG+P+ PLWD  KG+FVGVLSALDFILILRELG +GSNLTEEELETHTISAW
Sbjct: 180 QAFHTLYEQGIPVAPLWDFCKGQFVGVLSALDFILILRELGNHGSNLTEEELETHTISAW 239

Query: 238 KVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSC 297
           K GKL L   RQ+DG+GR CPR LV AGPYDSLK+V LKILQNKVATVPIIHS    GS 
Sbjct: 240 KEGKLHL---RQIDGSGRLCPRHLVHAGPYDSLKDVTLKILQNKVATVPIIHSASQDGSF 296

Query: 298 QEILYLASLSDILK--CKHFLHS 318
            ++L+LASLS ILK  C+HF HS
Sbjct: 297 PQLLHLASLSGILKCICRHFRHS 319

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225450904|ref|XP_002284480.1| PREDICTED: sucrose nonfermenting 4-like protein-like isoform 1 [Vitis vinifera]

 Score =  436 bits (1121), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 222/330 (67%), Positives = 259/330 (78%), Gaps = 17/330 (5%)

Query: 1   MYNSGLNTGHENSGVVGSILVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQ 60
           M+ SG  +GHENS + G++L+P RF+WP GGRRV LSGSFTRWSE +PMSP EGCP VFQ
Sbjct: 1   MFVSGAESGHENSAIPGTVLIPTRFVWPYGGRRVLLSGSFTRWSEHIPMSPIEGCPTVFQ 60

Query: 61  IICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGVVNCVYIAVPQPDMVPNTISPETSG- 119
           +I  L PG+HQYKF+VDGEWRHDE+QP VSGNYGVVN +++   +PD+VP   SP+T G 
Sbjct: 61  VIWSLAPGYHQYKFFVDGEWRHDEHQPFVSGNYGVVNTIFLPR-EPDVVPAVFSPDTPGG 119

Query: 120 -NMEVDDVVMRPEG--------FAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTAL 170
            NM++D+    P G          + SEADL++SR R+S FLSTH  YELLP+SGKV AL
Sbjct: 120 SNMDLDNDPF-PRGSSGTLQEVIPRISEADLEVSRHRVSEFLSTHIAYELLPESGKVIAL 178

Query: 171 DVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELE 230
           DVNL VKQAFH LYEQG+P+ PLWD  KG+FVGVLSALDFILILRELG +GSNLTEEELE
Sbjct: 179 DVNLPVKQAFHTLYEQGIPVAPLWDFCKGQFVGVLSALDFILILRELGNHGSNLTEEELE 238

Query: 231 THTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHS 290
           THTISAWK GKL L   RQ+DG+GR CPR LV AGPYDSLK+V LKILQNKVATVPIIHS
Sbjct: 239 THTISAWKEGKLHL---RQIDGSGRLCPRHLVHAGPYDSLKDVTLKILQNKVATVPIIHS 295

Query: 291 TGPAGSCQEILYLASLSDILK--CKHFLHS 318
               GS  ++L+LASLS ILK  C+HF HS
Sbjct: 296 ASQDGSFPQLLHLASLSGILKCICRHFRHS 325

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542654|ref|XP_002512390.1| AMP-activated protein kinase, gamma regulatory subunit, putative [Ricinus communis] gi|223548351|gb|EEF49842.1| AMP-activated protein kinase, gamma regulatory subunit, putative [Ricinus communis]

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 217/321 (67%), Positives = 262/321 (81%), Gaps = 11/321 (3%)

Query: 1   MYNSGLNTGHENSGVVGSILVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQ 60
           M+ SG +TGH ++GV+     P+RF+WP GGR V LSG+FT W++ +PMSP EGCP VFQ
Sbjct: 1   MFGSGQDTGHGSTGVL-----PLRFVWPYGGRSVFLSGTFTGWTDHIPMSPVEGCPTVFQ 55

Query: 61  IICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGVVNCVYIAVPQPDMVPNTISPETSG- 119
           +IC L PG+HQYKF+VDGEWR+DE+QP VSGNYGVVN V++   +P+MVP   + ET+G 
Sbjct: 56  VICSLTPGYHQYKFFVDGEWRYDEHQPSVSGNYGVVNTVFLPR-EPNMVPPIPNSETAGS 114

Query: 120 NMEVDDVVMRPEGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQA 179
           NME+D+V +RPE   + SEADL++SR R S+FLSTHT YELLP+SGKV ALDVNL VKQA
Sbjct: 115 NMELDEVFLRPEVSPRGSEADLEVSRHRFSAFLSTHTAYELLPESGKVIALDVNLPVKQA 174

Query: 180 FHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKV 239
           FHVLYEQG+P+ PLWD  KG+FVGVLSALDFILILRELG +GSNLTEEELETHTISAWK 
Sbjct: 175 FHVLYEQGVPLAPLWDFCKGQFVGVLSALDFILILRELGNHGSNLTEEELETHTISAWKE 234

Query: 240 GKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQE 299
           GKL LN  RQ+DG+GR  PR L+ AGPYDSLK+VALKILQN V+T+PIIHS+   GS  +
Sbjct: 235 GKLHLN--RQIDGDGRAYPRSLIHAGPYDSLKDVALKILQNNVSTIPIIHSSSRDGSFPQ 292

Query: 300 ILYLASLSDILK--CKHFLHS 318
           +L+LASLS ILK  C+HF HS
Sbjct: 293 LLHLASLSGILKCICRHFRHS 313

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18390971|ref|NP_563834.1| sucrose nonfermenting 4-like protein [Arabidopsis thaliana] gi|75249553|sp|Q944A6.1|SNF4_ARATH RecName: Full=Sucrose nonfermenting 4-like protein; Short=SNF4; AltName: Full=CBS domain-containing protein CBSCBS3; AltName: Full=SNF1-related protein kinase regulatory subunit betagamma; Short=AKIN subunit betagamma; Short=AKINbetagamma gi|16612255|gb|AAL27498.1|AF439826_1 At1g09020/F7G19_11 [Arabidopsis thaliana] gi|23308443|gb|AAN18191.1| At1g09020/F7G19_11 [Arabidopsis thaliana] gi|75037070|gb|ABA12450.1| AKINbetagamma [Arabidopsis thaliana] gi|332190262|gb|AEE28383.1| sucrose nonfermenting 4-like protein [Arabidopsis thaliana]

 Score =  426 bits (1096), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 216/327 (66%), Positives = 253/327 (77%), Gaps = 13/327 (3%)

Query: 1   MYNSGLNTGHENSGVVGSILVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQ 60
           M+ S L++   NS   G +L P RF+WP GGRRV LSGSFTRW+E +PMSP EGCP VFQ
Sbjct: 1   MFGSTLDSSRGNSAASGQLLTPTRFVWPYGGRRVFLSGSFTRWTEHVPMSPLEGCPTVFQ 60

Query: 61  IICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGVVNCVYIAVPQPDMVPNTISPETSG- 119
           +IC L PG+HQYKF+VDGEWRHDE+QP VSGN GVVN ++I    PDMVP   SPET G 
Sbjct: 61  VICNLTPGYHQYKFFVDGEWRHDEHQPFVSGNGGVVNTIFIT--GPDMVPAGFSPETLGR 118

Query: 120 -NMEVDDVVMRP-----EGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVN 173
            NM+VDDV +R      E   + S  DL+LSR RIS  LST T YELLP+SGKV ALDVN
Sbjct: 119 SNMDVDDVFLRTADPSQEAVPRMSGVDLELSRHRISVLLSTRTAYELLPESGKVIALDVN 178

Query: 174 LAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHT 233
           L VKQAFH+LYEQG+P+ PLWD  KG+FVGVL  LDFILILRELGT+GSNLTEEELETHT
Sbjct: 179 LPVKQAFHILYEQGIPLAPLWDFGKGQFVGVLGPLDFILILRELGTHGSNLTEEELETHT 238

Query: 234 ISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGP 293
           I+AWK GK  ++  RQ DG+GRP PRPLVQ GPYD+LK+VALKILQNKVA VP+I+S+  
Sbjct: 239 IAAWKEGKAHIS--RQYDGSGRPYPRPLVQVGPYDNLKDVALKILQNKVAAVPVIYSSLQ 296

Query: 294 AGSCQEILYLASLSDILK--CKHFLHS 318
            GS  ++L+LASLS ILK  C++F HS
Sbjct: 297 DGSYPQLLHLASLSGILKCICRYFRHS 323

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297849192|ref|XP_002892477.1| hypothetical protein ARALYDRAFT_470981 [Arabidopsis lyrata subsp. lyrata] gi|297338319|gb|EFH68736.1| hypothetical protein ARALYDRAFT_470981 [Arabidopsis lyrata subsp. lyrata]

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 215/322 (66%), Positives = 252/322 (78%), Gaps = 11/322 (3%)

Query: 1   MYNSGLNTGHENSGVVGSILVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQ 60
           M+ S L++   NS   G +L P RF+WP GGRRV LSGSFTRW+E +PMSP EGCP VFQ
Sbjct: 1   MFGSTLDSSRGNSAASGQLLTPTRFVWPYGGRRVFLSGSFTRWTEHVPMSPLEGCPTVFQ 60

Query: 61  IICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGVVNCVYIAVPQPDMVPNTISPETSG- 119
           +IC L PG+HQYKF+VDGEWRHDE+QP VSGN GVVN ++I    PDMVP   SPET G 
Sbjct: 61  VICNLTPGYHQYKFFVDGEWRHDEHQPFVSGNGGVVNTIFIT--GPDMVPAGFSPETLGR 118

Query: 120 -NMEVDDVVMRPEGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQ 178
            NM+VDDV +R    A  S  DL++SR RIS  LST T YELLP+SGKV ALDVNL VKQ
Sbjct: 119 SNMDVDDVFLRT---ADPSGVDLEVSRHRISVLLSTRTAYELLPESGKVIALDVNLPVKQ 175

Query: 179 AFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWK 238
           AFH+LYEQG+P+ PLWD  KG+FVGVL  LDFILILRELGT+GSNLTEEELETHTI+AWK
Sbjct: 176 AFHILYEQGIPLAPLWDFGKGQFVGVLGPLDFILILRELGTHGSNLTEEELETHTIAAWK 235

Query: 239 VGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQ 298
            GK  ++  RQ DG+GRP PRPLVQ GPYD+LK+VALKILQNKVA VP+I+S+   GS  
Sbjct: 236 EGKAHIS--RQFDGSGRPYPRPLVQVGPYDNLKDVALKILQNKVAAVPVIYSSLQDGSYP 293

Query: 299 EILYLASLSDILK--CKHFLHS 318
           ++L+LASLS ILK  C++F HS
Sbjct: 294 QLLHLASLSGILKCICRYFRHS 315

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|75037079|gb|ABA12451.1| AKINbetagammaI [Arabidopsis thaliana]

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 216/327 (66%), Positives = 253/327 (77%), Gaps = 13/327 (3%)

Query: 1   MYNSGLNTGHENSGVVGSILVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQ 60
           M+ S L++   NS   G +L P RF+WP GGRRV LSGSFTRW+E +PMSP EGCP VFQ
Sbjct: 1   MFGSTLDSSRGNSAASGQLLTPTRFVWPYGGRRVFLSGSFTRWTEHVPMSPLEGCPTVFQ 60

Query: 61  IICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGVVNCVYIAVPQPDMVPNTISPETSG- 119
           +IC L PG+HQYKF+VDGEWRHDE+QP VSGN GVVN ++I    PDMVP   SPET G 
Sbjct: 61  VICNLTPGYHQYKFFVDGEWRHDEHQPFVSGNGGVVNTIFIT--GPDMVPAGFSPETLGR 118

Query: 120 -NMEVDDVVMRP-----EGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVN 173
            NM+VDDV +R      E   + S  DL+LSR RIS  LST T YELLP+SGKV ALDVN
Sbjct: 119 SNMDVDDVFLRTADPSQEAVPRMSGVDLELSRHRISVLLSTRTAYELLPESGKVIALDVN 178

Query: 174 LAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHT 233
           L VKQAFH+LYEQG+P+ PLWD  KG+FVGVL  LDFILILRELGT+GSNLTEEELETHT
Sbjct: 179 LPVKQAFHILYEQGIPLAPLWDFGKGQFVGVLGPLDFILILRELGTHGSNLTEEELETHT 238

Query: 234 ISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGP 293
           I+AWK GK  ++  RQ DG+GRP PRPLVQ GPYD+LK+VALKILQNKVA VP+I+S+  
Sbjct: 239 IAAWKEGKAHIS--RQYDGSGRPYPRPLVQVGPYDNLKDVALKILQNKVAAVPVIYSSLQ 296

Query: 294 AGSCQEILYLASLSDILK--CKHFLHS 318
            GS  ++L+LASLS ILK  C++F HS
Sbjct: 297 DGSYPQLLHLASLSGILKCICRYFRHS 323

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312281727|dbj|BAJ33729.1| unnamed protein product [Thellungiella halophila]

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 211/327 (64%), Positives = 249/327 (76%), Gaps = 13/327 (3%)

Query: 1   MYNSGLNTGHENSGVVGSILVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQ 60
           M+ S L++   NS   G +L P RF+WP GGRRV LSGSFTRW+E +PMSP EGCP VFQ
Sbjct: 1   MFGSTLDSSRGNSAASGQLLTPTRFVWPYGGRRVFLSGSFTRWTEHVPMSPLEGCPTVFQ 60

Query: 61  IICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGVVNCVYIAVPQPDMVPNTISPETSG- 119
           +IC L PG+HQYKF+VDGEWRHDE+QP VSGN GV+N ++I     DMVP    PET G 
Sbjct: 61  VICNLTPGYHQYKFFVDGEWRHDEHQPFVSGNGGVMNTIFIT--GQDMVPTGFIPETLGR 118

Query: 120 -NMEVDDVVMR-----PEGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVN 173
            NM+VD V  R      E   + S  DL++SR RIS  LST T YELLP+SGKV ALDVN
Sbjct: 119 ENMDVDGVFPRMTDSPQESIPRMSSVDLEVSRHRISVLLSTRTAYELLPESGKVIALDVN 178

Query: 174 LAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHT 233
           L VKQAFH+LYEQG+P+ PLWD  KG+FVGVL  LDFILILRELGT+GSNLTEEELETHT
Sbjct: 179 LPVKQAFHILYEQGIPLAPLWDFGKGQFVGVLGPLDFILILRELGTHGSNLTEEELETHT 238

Query: 234 ISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGP 293
           I+AWK GK  ++  RQ DG+GRP PRPLVQ GPYD+LK+VALKILQNKVA VP+I+S+  
Sbjct: 239 IAAWKEGKAHIS--RQFDGSGRPYPRPLVQVGPYDNLKDVALKILQNKVAAVPVIYSSLQ 296

Query: 294 AGSCQEILYLASLSDILK--CKHFLHS 318
            GS  ++L+LASLS ILK  C++F HS
Sbjct: 297 DGSYPQLLHLASLSGILKCICRYFRHS 323

Source: Thellungiella halophila

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225432326|ref|XP_002274373.1| PREDICTED: sucrose nonfermenting 4-like protein [Vitis vinifera] gi|297736884|emb|CBI26085.3| unnamed protein product [Vitis vinifera]

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 205/332 (61%), Positives = 247/332 (74%), Gaps = 17/332 (5%)

Query: 1   MYNSGLNTGHENSGVVGSILVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQ 60
           M + G+++  E  GV G++L+P+ F+W  GGR V LSGSFT W+    MSP EGCP VFQ
Sbjct: 1   MLSPGMDSAREGGGVAGTVLIPMNFVWSYGGRSVYLSGSFTGWTNLYQMSPVEGCPTVFQ 60

Query: 61  IICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGVVNCVYIAVPQPDMVPNTISPETSG- 119
           +IC L PG+HQYKF+VDGEWRHDENQP +S  YG+VN V +A  + D +P TISP     
Sbjct: 61  VICSLTPGYHQYKFFVDGEWRHDENQPFISCTYGIVNTVLLA-RESDYIPPTISPAVPSL 119

Query: 120 -NMEVDDVVM----------RPEGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVT 168
            NM+VD+             R E   +  E DL++SR R+S FLSTHTVYELLP+SGKV 
Sbjct: 120 TNMDVDNEAFQQLVRISDGSRHEAVPRIQETDLEVSRHRVSLFLSTHTVYELLPESGKVI 179

Query: 169 ALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEE 228
            LDV+L VKQAFH+LYEQG+ + PLWD FKGRFVGVLSALDFILILRELG +GSNLTEEE
Sbjct: 180 TLDVDLPVKQAFHILYEQGISIAPLWDYFKGRFVGVLSALDFILILRELGNHGSNLTEEE 239

Query: 229 LETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPII 288
           LETHTISAWK GK  LN  RQ+DGNGR   R L+ AGPYD+LK+VALKIL+N+VATVPII
Sbjct: 240 LETHTISAWKEGKGYLN--RQIDGNGRAFSRGLIHAGPYDNLKDVALKILENEVATVPII 297

Query: 289 HSTGPAGSCQEILYLASLSDILK--CKHFLHS 318
           HS+   GS  ++L+LASLS ILK  C++F HS
Sbjct: 298 HSSSEDGSFPQLLHLASLSGILKCICRYFRHS 329

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123752|ref|XP_002330199.1| predicted protein [Populus trichocarpa] gi|222871655|gb|EEF08786.1| predicted protein [Populus trichocarpa]

 Score =  393 bits (1009), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 202/322 (62%), Positives = 244/322 (75%), Gaps = 11/322 (3%)

Query: 1   MYNSGLNTGHENSGVVGSILVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQ 60
           M+ SG +TGH+NSGV+     PVRF+WP GG  VS+ G+FTRW + +PMSP EGCP VFQ
Sbjct: 1   MFGSGSSTGHDNSGVI-----PVRFVWPYGGGEVSIFGTFTRWIDLLPMSPVEGCPNVFQ 55

Query: 61  IICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGVVNCVYIAVPQPDMVPNTISPETSGN 120
           I+  L PG HQ+KF VDG+WR DE    V G YGVVN V +    P  + N+ +P  S N
Sbjct: 56  IVVSLVPGLHQFKFRVDGQWRVDEQLSFVDGPYGVVNTV-VLTKDPPQILNSETPGRS-N 113

Query: 121 MEVDDVVMRPEGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAF 180
           ME+DDV + PE     S  +L++SR RIS+FLSTHT YELLP+SGKV ALDV L VKQAF
Sbjct: 114 MELDDVSVCPEVIQGISATELEVSRHRISAFLSTHTAYELLPESGKVIALDVTLPVKQAF 173

Query: 181 HVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVG 240
           H+LYEQG+PM PLWD  KG+FVGVL+ALDFILILRELGT+GSNLTEEELETHTISAWK G
Sbjct: 174 HILYEQGIPMAPLWDFCKGQFVGVLTALDFILILRELGTHGSNLTEEELETHTISAWKEG 233

Query: 241 KLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEI 300
           K+ LN  RQ+DG+GR   + L+ AGPYDS+K+V+LKILQN V+TVPIIHS    GS  ++
Sbjct: 234 KMHLN--RQIDGSGRAYSKHLIHAGPYDSMKDVSLKILQNSVSTVPIIHSASQDGSFPQL 291

Query: 301 LYLASLSDILK--CKHFLHSLG 320
           L+LASLS ILK  C++F HS G
Sbjct: 292 LHLASLSGILKCICRYFRHSAG 313

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356556126|ref|XP_003546378.1| PREDICTED: sucrose nonfermenting 4-like protein-like [Glycine max]

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 195/330 (59%), Positives = 246/330 (74%), Gaps = 16/330 (4%)

Query: 1   MYNSGLNTGHENSGVVGSILVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQ 60
           M+   +++     GV G++L+P+RF+WP GGR V LSGSFTRW E +PMSP EGCP VFQ
Sbjct: 1   MFGQSMDSARNAGGVAGTVLIPMRFVWPYGGRSVFLSGSFTRWLELLPMSPVEGCPTVFQ 60

Query: 61  IICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGVVNCVYIAVPQPDMVPNTISPETSGN 120
           +I  LPPG+HQYKF+VDGEWRHDE+QP+V G+YG+VN V++A   P+ +P       SGN
Sbjct: 61  VIYNLPPGYHQYKFFVDGEWRHDEHQPYVPGDYGIVNTVFLAT-DPNYIPVLPPDVASGN 119

Query: 121 -MEVDDVVMR----------PEGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTA 169
            M+VD+   R           E   + S+ D+Q+SR RIS+FLS+HT YELLP+SGKV A
Sbjct: 120 SMDVDNDAFRRMVRLTDGTLSEVLPRISDTDVQISRQRISAFLSSHTAYELLPESGKVVA 179

Query: 170 LDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEEL 229
           LDV+L VKQAFH+L+EQG+ M PLWD  KG+FVGVLSALDFILILRELG +GSNLTEEEL
Sbjct: 180 LDVDLPVKQAFHILHEQGIFMAPLWDFCKGQFVGVLSALDFILILRELGNHGSNLTEEEL 239

Query: 230 ETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIH 289
           ETHTISAWK GK  LN  RQ +G+G    R  + AGPYD+LK++A+KILQ +V+TVPIIH
Sbjct: 240 ETHTISAWKEGKSYLN--RQNNGHGTMFSRRFIHAGPYDNLKDIAMKILQKEVSTVPIIH 297

Query: 290 STGPAGSCQEILYLASLSDILK--CKHFLH 317
           S+    S  ++L+LASLS ILK  C++F H
Sbjct: 298 SSSEDASFPQLLHLASLSGILKCICRYFRH 327

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	323
TAIR|locus:2036079	487	SNF4 "homolog of yeast sucrose	0.972	0.644	0.663	1.4e-110
MGI|MGI:1336167	270	Prkab1 "protein kinase, AMP-ac	0.427	0.511	0.337	1.2e-15
RGD|71057	270	Prkab1 "protein kinase, AMP-ac	0.427	0.511	0.337	1.2e-15
UNIPROTKB|Q5BIS9	270	PRKAB1 "5'-AMP-activated prote	0.427	0.511	0.344	3.2e-15
RGD|1308698	493	Prkag3 "protein kinase, AMP-ac	0.476	0.312	0.311	9.8e-15
UNIPROTKB|E2RH75	270	PRKAB1 "Uncharacterized protei	0.427	0.511	0.337	1.4e-14
UNIPROTKB|Q9Y478	270	PRKAB1 "5'-AMP-activated prote	0.430	0.514	0.346	1.4e-14
ZFIN|ZDB-GENE-030131-7172	260	prkab1b "protein kinase, AMP-a	0.430	0.534	0.344	2.1e-14
UNIPROTKB|Q27IP4	273	PRKAB1 "Uncharacterized protei	0.427	0.505	0.344	3.7e-14
ZFIN|ZDB-GENE-040718-377	268	prkab1a "protein kinase, AMP-a	0.433	0.522	0.326	1.1e-13

TAIR|locus:2036079 SNF4 "homolog of yeast sucrose nonfermenting 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 1092 (389.5 bits), Expect = 1.4e-110, P = 1.4e-110
 Identities = 217/327 (66%), Positives = 254/327 (77%)

Query:     1 MYNSGLNTGHENSGVVGSILVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQ 60
             M+ S L++   NS   G +L P RF+WP GGRRV LSGSFTRW+E +PMSP EGCP VFQ
Sbjct:     1 MFGSTLDSSRGNSAASGQLLTPTRFVWPYGGRRVFLSGSFTRWTEHVPMSPLEGCPTVFQ 60

Query:    61 IICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGVVNCVYIAVPQPDMVPNTISPETSG- 119
             +IC L PG+HQYKF+VDGEWRHDE+QP VSGN GVVN ++I    PDMVP   SPET G 
Sbjct:    61 VICNLTPGYHQYKFFVDGEWRHDEHQPFVSGNGGVVNTIFIT--GPDMVPAGFSPETLGR 118

Query:   120 -NMEVDDVVMR---P--EGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVN 173
              NM+VDDV +R   P  E   + S  DL+LSR RIS  LST T YELLP+SGKV ALDVN
Sbjct:   119 SNMDVDDVFLRTADPSQEAVPRMSGVDLELSRHRISVLLSTRTAYELLPESGKVIALDVN 178

Query:   174 LAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHT 233
             L VKQAFH+LYEQG+P+ PLWD  KG+FVGVL  LDFILILRELGT+GSNLTEEELETHT
Sbjct:   179 LPVKQAFHILYEQGIPLAPLWDFGKGQFVGVLGPLDFILILRELGTHGSNLTEEELETHT 238

Query:   234 ISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGP 293
             I+AWK GK  ++  RQ DG+GRP PRPLVQ GPYD+LK+VALKILQNKVA VP+I+S+  
Sbjct:   239 IAAWKEGKAHIS--RQYDGSGRPYPRPLVQVGPYDNLKDVALKILQNKVAAVPVIYSSLQ 296

Query:   294 AGSCQEILYLASLSDILKC--KHFLHS 318
              GS  ++L+LASLS ILKC  ++F HS
Sbjct:   297 DGSYPQLLHLASLSGILKCICRYFRHS 323

GO:0005634 "nucleus" evidence=ISM

GO:0005515 "protein binding" evidence=IPI

GO:0030295 "protein kinase activator activity" evidence=ISS

GO:0042149 "cellular response to glucose starvation" evidence=IDA

GO:0004674 "protein serine/threonine kinase activity" evidence=IDA

GO:0046777 "protein autophosphorylation" evidence=IDA

MGI|MGI:1336167 Prkab1 "protein kinase, AMP-activated, beta 1 non-catalytic subunit" [Mus musculus (taxid:10090)]

 Score = 198 (74.8 bits), Expect = 1.2e-15, P = 1.2e-15
 Identities = 50/148 (33%), Positives = 77/148 (52%)

Query:    22 PVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWR 81
             P  F W  GG+ V LSGSF  WS+ +P++ S+     F  I  LP G HQYKF+VDG+W 
Sbjct:    79 PTVFRWTGGGKEVYLSGSFNNWSK-LPLTRSQNN---FVAILDLPEGEHQYKFFVDGQWT 134

Query:    82 HDENQPHVSGNYGVVNCVYIAVPQPDM-VPNTISPETSGNMEVDDVVMRPEGFAQYSEAD 140
             HD ++P V+   G VN + I V + D  V + +  ++    +V ++   P G   + E  
Sbjct:   135 HDPSEPIVTSQLGTVNNI-IQVKKTDFEVFDALMVDSQKCSDVSELSSSPPG-PYHQEPY 192

Query:   141 LQLSRDRISS--FLSTHTVYELL-PDSG 165
             +    +R  +   L  H +  +L  D+G
Sbjct:   193 MSKPEERFKAPPILPPHLLQVILNKDTG 220

GO:0004672 "protein kinase activity" evidence=ISO

GO:0004679 "AMP-activated protein kinase activity" evidence=ISO;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0006468 "protein phosphorylation" evidence=ISO;TAS

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0006631 "fatty acid metabolic process" evidence=IEA

GO:0006633 "fatty acid biosynthetic process" evidence=IEA

GO:0006950 "response to stress" evidence=TAS

GO:0010628 "positive regulation of gene expression" evidence=ISO

GO:0016301 "kinase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0019901 "protein kinase binding" evidence=ISO

GO:0031588 "AMP-activated protein kinase complex" evidence=ISO

GO:0043234 "protein complex" evidence=ISO

GO:0050790 "regulation of catalytic activity" evidence=ISO

GO:0051291 "protein heterooligomerization" evidence=ISO

RGD|71057 Prkab1 "protein kinase, AMP-activated, beta 1 non-catalytic subunit" [Rattus norvegicus (taxid:10116)]

 Score = 198 (74.8 bits), Expect = 1.2e-15, P = 1.2e-15
 Identities = 50/148 (33%), Positives = 77/148 (52%)

Query:    22 PVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWR 81
             P  F W  GG+ V LSGSF  WS+ +P++ S+     F  I  LP G HQYKF+VDG+W 
Sbjct:    79 PTVFRWTGGGKEVYLSGSFNNWSK-LPLTRSQNN---FVAILDLPEGEHQYKFFVDGQWT 134

Query:    82 HDENQPHVSGNYGVVNCVYIAVPQPDM-VPNTISPETSGNMEVDDVVMRPEGFAQYSEAD 140
             HD ++P V+   G VN + I V + D  V + +  ++    +V ++   P G   + E  
Sbjct:   135 HDPSEPIVTSQLGTVNNI-IQVKKTDFEVFDALMVDSQKCSDVSELSSSPPG-PYHQEPY 192

Query:   141 LQLSRDRISS--FLSTHTVYELL-PDSG 165
             +    +R  +   L  H +  +L  D+G
Sbjct:   193 ISKPEERFKAPPILPPHLLQVILNKDTG 220

GO:0004672 "protein kinase activity" evidence=ISO

GO:0004679 "AMP-activated protein kinase activity" evidence=IDA;TAS

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0006468 "protein phosphorylation" evidence=ISO

GO:0006633 "fatty acid biosynthetic process" evidence=IEA

GO:0006950 "response to stress" evidence=TAS

GO:0010628 "positive regulation of gene expression" evidence=ISO

GO:0019901 "protein kinase binding" evidence=IPI

GO:0031588 "AMP-activated protein kinase complex" evidence=IDA

GO:0043234 "protein complex" evidence=IDA

GO:0050790 "regulation of catalytic activity" evidence=IDA

GO:0051291 "protein heterooligomerization" evidence=IDA

UNIPROTKB|Q5BIS9 PRKAB1 "5'-AMP-activated protein kinase subunit beta-1" [Bos taurus (taxid:9913)]

 Score = 197 (74.4 bits), Expect = 3.2e-15, P = 3.2e-15
 Identities = 51/148 (34%), Positives = 76/148 (51%)

Query:    22 PVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWR 81
             P  F W  GG+ V LSGSF  WS+ +P++ S      F  I  LP G HQYKF+VDG+W 
Sbjct:    79 PTVFRWTGGGKEVYLSGSFNNWSK-LPLTRSHNN---FVAILDLPEGEHQYKFFVDGQWT 134

Query:    82 HDENQPHVSGNYGVVNCVYIAVPQPDM-VPNTISPETSGNMEVDDVVMRPEGFAQYSEAD 140
             HD ++P V+   G VN V I V + D  V + +  ++    +V ++   P G   + E  
Sbjct:   135 HDPSEPVVTSQLGTVNNV-IQVKKTDFEVFDALMVDSQKCSDVSELSSSPPG-PYHQEPY 192

Query:   141 LQLSRDRISS--FLSTHTVYELL-PDSG 165
             +    +R  +   L  H +  +L  D+G
Sbjct:   193 ISKPEERFKAPPILPPHLLQVILNKDTG 220

GO:0005634 "nucleus" evidence=IEA

GO:0006633 "fatty acid biosynthetic process" evidence=IEA

RGD|1308698 Prkag3 "protein kinase, AMP-activated, gamma 3 non-catalytic subunit" [Rattus norvegicus (taxid:10116)]

 Score = 210 (79.0 bits), Expect = 9.8e-15, P = 9.8e-15
 Identities = 53/170 (31%), Positives = 86/170 (50%)

Query:   151 FLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDF 210
             F+  HT Y+ +  S K+   D  L +K+AF  +   G+   PLWD  K  FVG+L+  DF
Sbjct:   187 FMQEHTCYDAMATSSKLVIFDTTLEIKKAFFAMVANGVRAAPLWDSKKQSFVGMLTITDF 246

Query:   211 ILILRELGTNGSNLTE-EELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDS 269
             IL+L       S L +  E+E H I  W+    ++ L+      G  C +PLV   P DS
Sbjct:   247 ILVLHRYYR--SPLVQIYEIEEHKIETWRGFSAEIYLQ------G--CFKPLVSISPNDS 296

Query:   270 LKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCKHFLHSL 319
             L E    +++N++  +P++     +G+   +LY+ +   +LK  H   +L
Sbjct:   297 LFEAVYALIKNRIHRLPVLDPV--SGT---VLYILTHKRLLKFLHIFGAL 341

GO:0005978 "glycogen biosynthetic process" evidence=IEA;ISO

GO:0015758 "glucose transport" evidence=IEA;ISO

GO:0016301 "kinase activity" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA;ISO

GO:0031588 "AMP-activated protein kinase complex" evidence=IDA

GO:0004679 "AMP-activated protein kinase activity" evidence=IMP

UNIPROTKB|E2RH75 PRKAB1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 195 (73.7 bits), Expect = 1.4e-14, P = 1.4e-14
 Identities = 50/148 (33%), Positives = 76/148 (51%)

Query:    22 PVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWR 81
             P  F W  GG+ V LSGSF  WS+ +P++ S      F  I  LP G HQYKF+VDG+W 
Sbjct:    79 PTVFRWTGGGKEVYLSGSFNNWSK-LPLTRSHNN---FVAILDLPEGEHQYKFFVDGQWT 134

Query:    82 HDENQPHVSGNYGVVNCVYIAVPQPDM-VPNTISPETSGNMEVDDVVMRPEGFAQYSEAD 140
             HD ++P V+   G VN + I V + D  V + +  ++    +V ++   P G   + E  
Sbjct:   135 HDPSEPIVTSQLGTVNNI-IQVKKTDFEVFDALMVDSQKCSDVSELSSSPPG-PYHQEPY 192

Query:   141 LQLSRDRISS--FLSTHTVYELL-PDSG 165
             +    +R  +   L  H +  +L  D+G
Sbjct:   193 VSKPEERFKAPPILPPHLLQVILNKDTG 220

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|Q9Y478 PRKAB1 "5'-AMP-activated protein kinase subunit beta-1" [Homo sapiens (taxid:9606)]

 Score = 195 (73.7 bits), Expect = 1.4e-14, P = 1.4e-14
 Identities = 51/147 (34%), Positives = 74/147 (50%)

Query:    22 PVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWR 81
             P  F W  GG+ V LSGSF  WS+ +P++ S      F  I  LP G HQYKF+VDG+W 
Sbjct:    79 PTVFRWTGGGKEVYLSGSFNNWSK-LPLTRSHNN---FVAILDLPEGEHQYKFFVDGQWT 134

Query:    82 HDENQPHVSGNYGVVNCVYIAVPQPDM-VPNTISPETSGNMEVDDVVMRPEG-FAQYSEA 139
             HD ++P V+   G VN + I V + D  V + +  ++    +V ++   P G + Q    
Sbjct:   135 HDPSEPIVTSQLGTVNNI-IQVKKTDFEVFDALMVDSQKCSDVSELSSSPPGPYHQEPYV 193

Query:   140 DLQLSRDRISSFLSTHTVYELL-PDSG 165
                  R R    L  H +  +L  D+G
Sbjct:   194 CKPEERFRAPPILPPHLLQVILNKDTG 220

GO:0006633 "fatty acid biosynthetic process" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

GO:0031588 "AMP-activated protein kinase complex" evidence=IEA

GO:0050790 "regulation of catalytic activity" evidence=IEA

GO:0051291 "protein heterooligomerization" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0006468 "protein phosphorylation" evidence=IDA

GO:0004672 "protein kinase activity" evidence=IDA

GO:0010628 "positive regulation of gene expression" evidence=IDA

GO:0007165 "signal transduction" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0007050 "cell cycle arrest" evidence=TAS

GO:0008286 "insulin receptor signaling pathway" evidence=TAS

GO:0046320 "regulation of fatty acid oxidation" evidence=TAS

ZFIN|ZDB-GENE-030131-7172 prkab1b "protein kinase, AMP-activated, beta 1 non-catalytic subunit, b" [Danio rerio (taxid:7955)]

 Score = 190 (71.9 bits), Expect = 2.1e-14, P = 2.1e-14
 Identities = 51/148 (34%), Positives = 73/148 (49%)

Query:    22 PVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWR 81
             P  F W   G+ + LSGSF  W+  +P++ S      F  I  LP G HQYKFYVDG W 
Sbjct:    68 PTVFRWKGPGKEIYLSGSFNNWATKIPLNKSHNN---FVAIIDLPEGEHQYKFYVDGHWT 124

Query:    82 HDENQPHVSGNYGVVNCVYIAVPQPDM-VPNTISPETSGNMEVDDVVMRPEGFAQYSEAD 140
              D  +P V+   GVVN V I V + D  V + +  ++    ++ D+   P G   + +  
Sbjct:   125 LDPKEPVVTNKSGVVNNV-IKVRKTDFEVFDALKTDSEKCADMSDLSSSPPG-PYHQDPY 182

Query:   141 LQLSRDRISS--FLSTHTVYELL-PDSG 165
                S D++ S   L  H +  LL  D+G
Sbjct:   183 STKSEDKLRSPPILPPHLLQVLLNKDTG 210

GO:0005575 "cellular_component" evidence=ND

GO:0016301 "kinase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

UNIPROTKB|Q27IP4 PRKAB1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 194 (73.4 bits), Expect = 3.7e-14, P = 3.7e-14
 Identities = 51/148 (34%), Positives = 77/148 (52%)

Query:    22 PVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWR 81
             P  F W  GG+ V LSGSF  WS+ +P++ S      F  I  LP G HQYKF+VDG+W 
Sbjct:    82 PTVFRWTGGGKEVYLSGSFNNWSK-IPLTRSHNN---FVAILDLPEGEHQYKFFVDGQWT 137

Query:    82 HDENQPHVSGNYGVVNCVYIAVPQPDM-VPNTISPETSGNMEVDDVVMRPEGFAQYSEAD 140
             HD ++P V+   G VN V I V + D  V + +  ++    ++ ++   P G   + E  
Sbjct:   138 HDPSEPVVTSQLGTVNNV-IQVKKTDFEVFDALMVDSQKCSDMSELSSSPPG-PYHQEPY 195

Query:   141 LQLSRDRISS--FLSTHTVYELL-PDSG 165
             +  + +R  S   L  H +  +L  D+G
Sbjct:   196 VCKAEERFKSPPILPPHLLQVILNKDTG 223

GO:0016301 "kinase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

ZFIN|ZDB-GENE-040718-377 prkab1a "protein kinase, AMP-activated, beta 1 non-catalytic subunit, a" [Danio rerio (taxid:7955)]

 Score = 190 (71.9 bits), Expect = 1.1e-13, P = 1.1e-13
 Identities = 48/147 (32%), Positives = 72/147 (48%)

Query:    22 PVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWR 81
             P  F W   G+ V +SGSF  W+  +P+  S+     F  I  LP G HQYKFYVDG W 
Sbjct:    76 PTVFRWTGAGKEVYISGSFNNWTNKIPLIRSQNN---FVAIVDLPEGEHQYKFYVDGLWT 132

Query:    82 HDENQPHVSGNYGVVNCVYIAVPQPDM-VPNTISPETSGNMEVDDVVMRPEG-FAQYSEA 139
             HD  +P V+   G VN + I V + D  V + +  ++    ++ D+   P G + Q +  
Sbjct:   133 HDPTEPVVTNQLGTVNNI-IQVKKTDFEVFDALMVDSQKCSDMSDLSSSPPGPYHQDAYT 191

Query:   140 DLQLSRDRISSFLSTHTVYELL-PDSG 165
               Q  + +    L  H +  +L  D+G
Sbjct:   192 PKQEEKFKSPPILPPHLLQVILNKDTG 218

GO:0005575 "cellular_component" evidence=ND

GO:0016310 "phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q944A6	SNF4_ARATH	No assigned EC number	0.6605	0.9721	0.6447	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	323
cd02859	80	cd02859, E_set_AMPKbeta_like_N, N-terminal Early s	3e-27
cd04618	98	cd04618, CBS_pair_5, The CBS domain, named after h	1e-21
cd07184	86	cd07184, E_set_Isoamylase_like_N, N-terminal Early	4e-07
cd02688	82	cd02688, E_set, Early set domain associated with t	3e-06
cd02205	113	cd02205, CBS_pair, The CBS domain, named after hum	4e-04
cd04642	126	cd04642, CBS_pair_29, The CBS domain, named after	0.003

>gnl|CDD|199889 cd02859, E_set_AMPKbeta_like_N, N-terminal Early set domain, a glycogen binding domain, associated with the catalytic domain of AMP-activated protein kinase beta subunit

 Score =  101 bits (254), Expect = 3e-27
 Identities = 34/77 (44%), Positives = 46/77 (59%), Gaps = 3/77 (3%)

Query: 22 PVRFIWPN-GGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEW 80
          PV F WP  GG+ V ++GSF  W +P+P+  S      F     LPPG ++YKF VDGEW
Sbjct: 1  PVTFRWPGPGGKEVYVTGSFDNWQQPIPLEKSGDG--EFSATVELPPGRYEYKFIVDGEW 58

Query: 81 RHDENQPHVSGNYGVVN 97
           HD + P V+  +G +N
Sbjct: 59 VHDPDLPTVTDEFGNLN 75

E or "early" set domains are associated with the catalytic domain of AMP-activated protein kinase beta subunit glycogen binding domain at the N-terminal end. AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as an alpha-beta-gamma heterotrimer. This N-terminal domain is the glycogen binding domain of the beta subunit. This domain is also a member of the CBM48 (Carbohydrate Binding Module 48) family whose members include pullulanase, maltooligosyl trehalose synthase, starch branching enzyme, glycogen branching enzyme, glycogen debranching enzyme, and isoamylase. Length = 80

>gnl|CDD|239990 cd04618, CBS_pair_5, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 87.7 bits (218), Expect = 1e-21
 Identities = 44/147 (29%), Positives = 59/147 (40%), Gaps = 50/147 (34%)

Query: 165 GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNL 224
            K+   D  L VK+AF+ L E G+   PLWD  K +FVG+L+  DFILILR         
Sbjct: 1   SKLVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILILR--------- 51

Query: 225 TEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVAT 284
                                               LV   P  SL + AL +L+NK+  
Sbjct: 52  ------------------------------------LVSIHPERSLFDAALLLLKNKIHR 75

Query: 285 VPIIHSTGPAGSCQEILYLASLSDILK 311
           +P+I       S    LY+ +   ILK
Sbjct: 76  LPVIDP-----STGTGLYILTSRRILK 97

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 98

>gnl|CDD|199892 cd07184, E_set_Isoamylase_like_N, N-terminal Early set domain associated with the catalytic domain of isoamylase-like (also called glycogen 6-glucanohydrolase) proteins

 Score = 46.9 bits (112), Expect = 4e-07
 Identities = 26/86 (30%), Positives = 35/86 (40%), Gaps = 10/86 (11%)

Query: 21 VPVRFIWPN--GGRRVSLSGSFTRWS-EPMPMSPS-EGCPAVFQIICRLPPG-HHQYKFY 75
            V F  P   G   VSL G F  W  +  PM     G    F     LP G  +Q+++ 
Sbjct: 1  CKVTFELPAEQGADSVSLVGDFNDWDPQATPMKKLKNG---TFSATLDLPAGREYQFRYL 57

Query: 76 VDGE-WRHDENQP-HVSGNYGVVNCV 99
          +DGE W +D     +    +G  N V
Sbjct: 58 IDGERWVNDPEADAYAPNGFGEENSV 83

E or "early" set domains are associated with the catalytic domain of isoamylase-like proteins at the N-terminal end. Isoamylase is one of the starch-debranching enzymes that catalyze the hydrolysis of alpha-1,6-glucosidic linkages specific in alpha-glucans such as amylopectin or glycogen. Isoamylase contains a bound calcium ion, but this is not in the same position as the conserved calcium ion that has been reported in other alpha-amylase family enzymes. The N-terminal domain of isoamylase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase. This domain is also a member of the CBM48 (Carbohydrate Binding Module 48) family whose members include pullulanase, maltooligosyl trehalose synthase, starch branching enzyme, glycogen branching enzyme, glycogen debranching enzyme, and the beta subunit of AMP-activated protein kinase. Length = 86

>gnl|CDD|199878 cd02688, E_set, Early set domain associated with the catalytic domain of sugar utilizing enzymes at either the N or C terminus

 Score = 44.1 bits (104), Expect = 3e-06
 Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 5/66 (7%)

Query: 22 PVRF-IWPNGGRRVSLSGSFTRWSE--PMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDG 78
           V F I+  G + V L GSF  W +   +PM+ + G   V+     LP G ++YK+ +DG
Sbjct: 1  GVTFRIFAPGAKSVYLIGSFNGWWQAQALPMTKNGG--GVWSATIPLPLGTYEYKYVIDG 58

Query: 79 EWRHDE 84
                
Sbjct: 59 GKNVLP 64

The E or "early" set domains of sugar utilizing enzymes are associated with different types of catalytic domains at either the N-terminal or C-terminal end. These domains may be related to the immunoglobulin and/or fibronectin type III superfamilies. Members of this family include alpha amylase, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase. A subset of these members were recently identified as members of the CBM48 (Carbohydrate Binding Module 48) family. Members of the CBM48 family include pullulanase, maltooligosyl trehalose synthase, starch branching enzyme, glycogen branching enzyme, glycogen debranching enzyme, isoamylase, and the beta subunit of AMP-activated protein kinase. Length = 82

>gnl|CDD|239067 cd02205, CBS_pair, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 39.3 bits (92), Expect = 4e-04
 Identities = 30/146 (20%), Positives = 59/146 (40%), Gaps = 35/146 (23%)

Query: 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLT 225
            V  +  +  V +A  ++ E G+  +P+ DD  GR VG+++  D +  L E G +     
Sbjct: 2   DVVTVSPDDTVAEALRLMLEHGISGLPVVDD-DGRLVGIVTERDLLRALAEGGLDPLVTV 60

Query: 226 EEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATV 285
            + +                             R +V   P  SL+E A  +L++ +  +
Sbjct: 61  GDVMT----------------------------RDVVTVSPDTSLEEAAELMLEHGIRRL 92

Query: 286 PIIHSTGPAGSCQEILYLASLSDILK 311
           P++   G       ++ + + SDIL+
Sbjct: 93  PVVDDEG------RLVGIVTRSDILR 112

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|240013 cd04642, CBS_pair_29, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 36.9 bits (86), Expect = 0.003
 Identities = 37/138 (26%), Positives = 63/138 (45%), Gaps = 24/138 (17%)

Query: 176 VKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTIS 235
           V  AF ++ +  +  +P+ D+ KG+ +G +SA D    L+ L  +  +L    L   TI+
Sbjct: 12  VLDAFKLMRKNNISGLPVVDE-KGKLIGNISASD----LKGLLLSPDDL----LLYRTIT 62

Query: 236 AWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTG-PA 294
                     L  +   +     RPL+   P  +LKEV  K++ NKV  V ++   G P 
Sbjct: 63  F-------KELSEKFTDSDGVKSRPLITCTPSSTLKEVITKLVANKVHRVWVVDEEGKPI 115

Query: 295 GSCQEILYLASLSDILKC 312
           G       + +L+DI+  
Sbjct: 116 G-------VITLTDIISI 126

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 126

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	323
COG3448	382	CBS-domain-containing membrane protein [Signal tra	99.95
cd02859	79	AMPKbeta_GBD_like AMP-activated protein kinase (AM	99.93
cd02861	82	E_set_proteins_like E or "early" set-like proteins	99.8
COG2524	294	Predicted transcriptional regulator, contains C-te	99.78
cd04618	98	CBS_pair_5 The CBS domain, named after human CBS,	99.75
KOG1616	289	consensus Protein involved in Snf1 protein kinase	99.69
KOG1764	381	consensus 5'-AMP-activated protein kinase, gamma s	99.68
cd04641	120	CBS_pair_28 The CBS domain, named after human CBS,	99.67
cd04642	126	CBS_pair_29 The CBS domain, named after human CBS,	99.62
cd04603	111	CBS_pair_KefB_assoc This cd contains two tandem re	99.62
cd04617	118	CBS_pair_4 The CBS domain, named after human CBS,	99.6
PRK10892	326	D-arabinose 5-phosphate isomerase; Provisional	99.59
cd04619	114	CBS_pair_6 The CBS domain, named after human CBS,	99.59
cd04630	114	CBS_pair_17 The CBS domain, named after human CBS,	99.59
cd04627	123	CBS_pair_14 The CBS domain, named after human CBS,	99.56
cd04614	96	CBS_pair_1 The CBS domain, named after human CBS,	99.56
cd04600	124	CBS_pair_HPP_assoc This cd contains two tandem rep	99.54
COG2905	610	Predicted signal-transduction protein containing c	99.53
cd04623	113	CBS_pair_10 The CBS domain, named after human CBS,	99.51
cd04593	115	CBS_pair_EriC_assoc_bac_arch This cd contains two	99.51
PRK11543	321	gutQ D-arabinose 5-phosphate isomerase; Provisiona	99.5
cd04607	113	CBS_pair_NTP_transferase_assoc This cd contains tw	99.5
cd04608	124	CBS_pair_PALP_assoc This cd contains two tandem re	99.5
COG3620	187	Predicted transcriptional regulator with C-termina	99.5
cd04586	135	CBS_pair_BON_assoc This cd contains two tandem rep	99.5
cd04632	128	CBS_pair_19 The CBS domain, named after human CBS,	99.5
cd04621	135	CBS_pair_8 The CBS domain, named after human CBS,	99.49
cd04589	111	CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains	99.49
cd04643	116	CBS_pair_30 The CBS domain, named after human CBS,	99.49
cd04605	110	CBS_pair_MET2_assoc This cd contains two tandem re	99.47
cd04801	114	CBS_pair_M50_like This cd contains two tandem repe	99.47
cd04629	114	CBS_pair_16 The CBS domain, named after human CBS,	99.47
cd04582	106	CBS_pair_ABC_OpuCA_assoc This cd contains two tand	99.47
cd04590	111	CBS_pair_CorC_HlyC_assoc This cd contains two tand	99.47
cd04639	111	CBS_pair_26 The CBS domain, named after human CBS,	99.47
COG0517	117	FOG: CBS domain [General function prediction only]	99.46
cd04636	132	CBS_pair_23 The CBS domain, named after human CBS,	99.46
cd04587	113	CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains	99.46
cd04803	122	CBS_pair_15 The CBS domain, named after human CBS,	99.46
cd04626	111	CBS_pair_13 The CBS domain, named after human CBS,	99.45
cd04625	112	CBS_pair_12 The CBS domain, named after human CBS,	99.45
cd04637	122	CBS_pair_24 The CBS domain, named after human CBS,	99.45
cd04631	125	CBS_pair_18 The CBS domain, named after human CBS,	99.45
cd04613	114	CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two	99.45
cd04620	115	CBS_pair_7 The CBS domain, named after human CBS,	99.44
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	99.44
cd04633	121	CBS_pair_20 The CBS domain, named after human CBS,	99.44
cd04595	110	CBS_pair_DHH_polyA_Pol_assoc This cd contains two	99.44
PRK01862	574	putative voltage-gated ClC-type chloride channel C	99.44
cd04800	111	CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains	99.43
cd04596	108	CBS_pair_DRTGG_assoc This cd contains two tandem r	99.43
cd04588	110	CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains	99.43
cd04802	112	CBS_pair_3 The CBS domain, named after human CBS,	99.43
cd04591	105	CBS_pair_EriC_assoc_euk_bac This cd contains two t	99.43
cd04615	113	CBS_pair_2 The CBS domain, named after human CBS,	99.43
cd04640	126	CBS_pair_27 The CBS domain, named after human CBS,	99.42
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	99.42
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	99.42
cd04583	109	CBS_pair_ABC_OpuCA_assoc2 This cd contains two tan	99.42
PRK15094	292	magnesium/cobalt efflux protein CorC; Provisional	99.42
cd04635	122	CBS_pair_22 The CBS domain, named after human CBS,	99.41
cd04622	113	CBS_pair_9 The CBS domain, named after human CBS,	99.41
cd04624	112	CBS_pair_11 The CBS domain, named after human CBS,	99.41
cd04585	122	CBS_pair_ACT_assoc2 This cd contains two tandem re	99.4
cd04612	111	CBS_pair_SpoIVFB_EriC_assoc This cd contains two t	99.4
cd04594	104	CBS_pair_EriC_assoc_archaea This cd contains two t	99.39
cd04604	114	CBS_pair_KpsF_GutQ_assoc This cd contains two tand	99.39
cd04611	111	CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two	99.39
PLN02274	505	inosine-5'-monophosphate dehydrogenase	99.37
cd04599	105	CBS_pair_GGDEF_assoc2 This cd contains two tandem	99.37
cd04609	110	CBS_pair_PALP_assoc2 This cd contains two tandem r	99.37
cd04610	107	CBS_pair_ParBc_assoc This cd contains two tandem r	99.36
TIGR03520	408	GldE gliding motility-associated protein GldE. Mem	99.36
cd04601	110	CBS_pair_IMPDH This cd contains two tandem repeats	99.36
cd04634	143	CBS_pair_21 The CBS domain, named after human CBS,	99.35
cd04584	121	CBS_pair_ACT_assoc This cd contains two tandem rep	99.35
cd04602	114	CBS_pair_IMPDH_2 This cd contains two tandem repea	99.35
cd02205	113	CBS_pair The CBS domain, named after human CBS, is	99.35
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	99.35
cd04592	133	CBS_pair_EriC_assoc_euk This cd contains two tande	99.33
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	99.33
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	99.3
cd04606	109	CBS_pair_Mg_transporter This cd contains two tande	99.3
TIGR00393	268	kpsF KpsF/GutQ family protein. This model describe	99.3
cd02858	85	Esterase_N_term Esterase N-terminal domain. Estera	99.29
TIGR00400	449	mgtE Mg2+ transporter (mgtE). This family of proka	99.28
PRK14869	546	putative manganese-dependent inorganic pyrophospha	99.27
TIGR01137	454	cysta_beta cystathionine beta-synthase. Members of	99.26
KOG1764	381	consensus 5'-AMP-activated protein kinase, gamma s	99.25
cd04598	119	CBS_pair_GGDEF_assoc This cd contains two tandem r	99.25
cd04638	106	CBS_pair_25 The CBS domain, named after human CBS,	99.24
COG4109	432	Predicted transcriptional regulator containing CBS	99.21
PRK11573	413	hypothetical protein; Provisional	98.97
PF00571	57	CBS: CBS domain CBS domain web page. Mutations in	98.95
PF00571	57	CBS: CBS domain CBS domain web page. Mutations in	98.95
COG2239	451	MgtE Mg/Co/Ni transporter MgtE (contains CBS domai	98.82
cd02688	83	E_set E or "early" set of sugar utilizing enzymes	98.8
COG3448	382	CBS-domain-containing membrane protein [Signal tra	98.76
COG1253	429	TlyC Hemolysins and related proteins containing CB	98.69
cd02854	99	Glycogen_branching_enzyme_like_N_term Glycogen bra	98.5
KOG2550	503	consensus IMP dehydrogenase/GMP reductase [Nucleot	98.46
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	98.41
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	98.4
COG3620	187	Predicted transcriptional regulator with C-termina	98.4
COG2524	294	Predicted transcriptional regulator, contains C-te	98.36
PF02922	85	CBM_48: Carbohydrate-binding module 48 (Isoamylase	98.34
KOG0474	762	consensus Cl- channel CLC-7 and related proteins (	98.33
cd04618	98	CBS_pair_5 The CBS domain, named after human CBS,	98.32
cd04603	111	CBS_pair_KefB_assoc This cd contains two tandem re	98.29
cd04617	118	CBS_pair_4 The CBS domain, named after human CBS,	98.23
COG4536	423	CorB Putative Mg2+ and Co2+ transporter CorB [Inor	98.23
PRK14869	546	putative manganese-dependent inorganic pyrophospha	98.21
TIGR00400	449	mgtE Mg2+ transporter (mgtE). This family of proka	98.2
cd04619	114	CBS_pair_6 The CBS domain, named after human CBS,	98.17
cd04597	113	CBS_pair_DRTGG_assoc2 This cd contains two tandem	98.12
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	98.12
COG4535	293	CorC Putative Mg2+ and Co2+ transporter CorC [Inor	98.09
cd04801	114	CBS_pair_M50_like This cd contains two tandem repe	98.07
cd04627	123	CBS_pair_14 The CBS domain, named after human CBS,	98.04
cd04625	112	CBS_pair_12 The CBS domain, named after human CBS,	98.01
cd04614	96	CBS_pair_1 The CBS domain, named after human CBS,	97.98
cd04597	113	CBS_pair_DRTGG_assoc2 This cd contains two tandem	97.97
cd04596	108	CBS_pair_DRTGG_assoc This cd contains two tandem r	97.97
cd04641	120	CBS_pair_28 The CBS domain, named after human CBS,	97.97
cd04642	126	CBS_pair_29 The CBS domain, named after human CBS,	97.96
cd04607	113	CBS_pair_NTP_transferase_assoc This cd contains tw	97.95
cd04620	115	CBS_pair_7 The CBS domain, named after human CBS,	97.95
cd04623	113	CBS_pair_10 The CBS domain, named after human CBS,	97.93
cd05808	95	CBM20_alpha_amylase Alpha-amylase, C-terminal CBM2	97.93
cd04630	114	CBS_pair_17 The CBS domain, named after human CBS,	97.92
cd04587	113	CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains	97.92
cd04615	113	CBS_pair_2 The CBS domain, named after human CBS,	97.91
PF00686	96	CBM_20: Starch binding domain; InterPro: IPR002044	97.91
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	97.91
COG0296	628	GlgB 1,4-alpha-glucan branching enzyme [Carbohydra	97.9
cd04640	126	CBS_pair_27 The CBS domain, named after human CBS,	97.89
cd04606	109	CBS_pair_Mg_transporter This cd contains two tande	97.88
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	97.86
cd04586	135	CBS_pair_BON_assoc This cd contains two tandem rep	97.85
smart00116	49	CBS Domain in cystathionine beta-synthase and othe	97.84
cd04800	111	CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains	97.84
cd04595	110	CBS_pair_DHH_polyA_Pol_assoc This cd contains two	97.84
cd04600	124	CBS_pair_HPP_assoc This cd contains two tandem rep	97.84
cd04582	106	CBS_pair_ABC_OpuCA_assoc This cd contains two tand	97.83
cd04626	111	CBS_pair_13 The CBS domain, named after human CBS,	97.83
PRK10892	326	D-arabinose 5-phosphate isomerase; Provisional	97.82
cd04629	114	CBS_pair_16 The CBS domain, named after human CBS,	97.82
cd02860	100	Pullulanase_N_term Pullulanase domain N-terminus.	97.81
cd04636	132	CBS_pair_23 The CBS domain, named after human CBS,	97.81
cd04633	121	CBS_pair_20 The CBS domain, named after human CBS,	97.81
cd04621	135	CBS_pair_8 The CBS domain, named after human CBS,	97.8
cd04585	122	CBS_pair_ACT_assoc2 This cd contains two tandem re	97.79
cd04593	115	CBS_pair_EriC_assoc_bac_arch This cd contains two	97.79
cd04610	107	CBS_pair_ParBc_assoc This cd contains two tandem r	97.79
cd04599	105	CBS_pair_GGDEF_assoc2 This cd contains two tandem	97.79
COG0517	117	FOG: CBS domain [General function prediction only]	97.78
cd04635	122	CBS_pair_22 The CBS domain, named after human CBS,	97.78
cd04592	133	CBS_pair_EriC_assoc_euk This cd contains two tande	97.76
cd04602	114	CBS_pair_IMPDH_2 This cd contains two tandem repea	97.76
cd04613	114	CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two	97.75
cd04590	111	CBS_pair_CorC_HlyC_assoc This cd contains two tand	97.75
cd04631	125	CBS_pair_18 The CBS domain, named after human CBS,	97.75
cd04583	109	CBS_pair_ABC_OpuCA_assoc2 This cd contains two tan	97.74
cd04601	110	CBS_pair_IMPDH This cd contains two tandem repeats	97.74
smart00116	49	CBS Domain in cystathionine beta-synthase and othe	97.73
cd04639	111	CBS_pair_26 The CBS domain, named after human CBS,	97.72
cd04612	111	CBS_pair_SpoIVFB_EriC_assoc This cd contains two t	97.71
cd04611	111	CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two	97.71
cd04803	122	CBS_pair_15 The CBS domain, named after human CBS,	97.7
cd04802	112	CBS_pair_3 The CBS domain, named after human CBS,	97.7
cd04604	114	CBS_pair_KpsF_GutQ_assoc This cd contains two tand	97.7
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	97.7
cd04605	110	CBS_pair_MET2_assoc This cd contains two tandem re	97.68
cd04588	110	CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains	97.68
cd04632	128	CBS_pair_19 The CBS domain, named after human CBS,	97.67
cd05818	92	CBM20_water_dikinase Phosphoglucan water dikinase	97.67
PRK11543	321	gutQ D-arabinose 5-phosphate isomerase; Provisiona	97.66
PLN02274	505	inosine-5'-monophosphate dehydrogenase	97.64
cd04589	111	CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains	97.64
cd04622	113	CBS_pair_9 The CBS domain, named after human CBS,	97.63
cd04643	116	CBS_pair_30 The CBS domain, named after human CBS,	97.62
cd04594	104	CBS_pair_EriC_assoc_archaea This cd contains two t	97.62
cd02855	106	Glycogen_branching_enzyme_N_term Glycogen branchin	97.6
cd04624	112	CBS_pair_11 The CBS domain, named after human CBS,	97.59
cd04584	121	CBS_pair_ACT_assoc This cd contains two tandem rep	97.58
cd04637	122	CBS_pair_24 The CBS domain, named after human CBS,	97.57
PRK01862	574	putative voltage-gated ClC-type chloride channel C	97.53
cd05814	120	CBM20_Prei4 Prei4, N-terminal CBM20 (carbohydrate-	97.53
cd04608	124	CBS_pair_PALP_assoc This cd contains two tandem re	97.52
cd02856	103	Glycogen_debranching_enzyme_N_term Glycogen_debran	97.5
cd05809	99	CBM20_beta_amylase Beta-amylase, C-terminal CBM20	97.5
cd05820	103	CBM20_novamyl Novamyl (also known as acarviose tra	97.47
COG2905	610	Predicted signal-transduction protein containing c	97.43
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	97.42
cd05813	95	CBM20_genethonin_1 Genethonin-1, C-terminal CBM20	97.42
cd04591	105	CBS_pair_EriC_assoc_euk_bac This cd contains two t	97.41
cd04609	110	CBS_pair_PALP_assoc2 This cd contains two tandem r	97.39
cd04638	106	CBS_pair_25 The CBS domain, named after human CBS,	97.39
cd04598	119	CBS_pair_GGDEF_assoc This cd contains two tandem r	97.37
PRK15094	292	magnesium/cobalt efflux protein CorC; Provisional	97.35
TIGR03520	408	GldE gliding motility-associated protein GldE. Mem	97.34
PLN02447	758	1,4-alpha-glucan-branching enzyme	97.34
PRK12313	633	glycogen branching enzyme; Provisional	97.34
cd04634	143	CBS_pair_21 The CBS domain, named after human CBS,	97.3
PRK12568	730	glycogen branching enzyme; Provisional	97.27
cd02205	113	CBS_pair The CBS domain, named after human CBS, is	97.26
KOG0475	696	consensus Cl- channel CLC-3 and related proteins (	97.26
TIGR01137	454	cysta_beta cystathionine beta-synthase. Members of	97.18
COG4109	432	Predicted transcriptional regulator containing CBS	97.16
TIGR00393	268	kpsF KpsF/GutQ family protein. This model describe	97.14
cd05811	106	CBM20_glucoamylase Glucoamylase (glucan1,4-alpha-g	97.13
cd02852	119	Isoamylase_N_term Isoamylase N-terminus domain. Is	97.13
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	97.11
PRK14706	639	glycogen branching enzyme; Provisional	97.1
COG2239	451	MgtE Mg/Co/Ni transporter MgtE (contains CBS domai	97.09
cd05817	100	CBM20_DSP Dual-specificity phosphatase (DSP), N-te	97.09
PRK14705	1224	glycogen branching enzyme; Provisional	97.01
PRK05402	726	glycogen branching enzyme; Provisional	97.0
cd05816	99	CBM20_DPE2_repeat2 Disproportionating enzyme 2 (DP	96.98
cd05807	101	CBM20_CGTase CGTase, C-terminal CBM20 (carbohydrat	96.96
cd05467	96	CBM20 The family 20 carbohydrate-binding module (C	96.93
cd05810	97	CBM20_alpha_MTH Glucan 1,4-alpha-maltotetraohydrol	96.82
TIGR02402	542	trehalose_TreZ malto-oligosyltrehalose trehalohydr	96.76
cd02853	85	MTHase_N_term Maltooligosyl trehalose synthase (MT	96.62
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	96.44
PRK05402	726	glycogen branching enzyme; Provisional	96.28
TIGR01515	613	branching_enzym alpha-1,4-glucan:alpha-1,4-glucan	95.96
cd05815	101	CBM20_DPE2_repeat1 Disproportionating enzyme 2 (DP	95.96
PF11806	122	DUF3327: Domain of unknown function (DUF3327); Int	95.54
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	95.53
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	95.51
PF03423	87	CBM_25: Carbohydrate binding domain (family 25); I	95.26
cd05806	112	CBM20_laforin Laforin protein tyrosine phosphatase	95.1
PLN02316	1036	synthase/transferase	94.64
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	94.52
PRK11573	413	hypothetical protein; Provisional	94.21
PLN02950	909	4-alpha-glucanotransferase	94.2
TIGR02104	605	pulA_typeI pullulanase, type I. Pullulan is an unu	94.12
PLN02960	897	alpha-amylase	93.99
COG1253	429	TlyC Hemolysins and related proteins containing CB	93.61
PRK10439	411	enterobactin/ferric enterobactin esterase; Provisi	93.45
KOG0474	762	consensus Cl- channel CLC-7 and related proteins (	93.3
PLN02950	909	4-alpha-glucanotransferase	93.27
PLN02316	1036	synthase/transferase	92.4
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	92.33
TIGR02100	688	glgX_debranch glycogen debranching enzyme GlgX. Th	91.55
TIGR02102	1111	pullulan_Gpos pullulanase, extracellular, Gram-pos	90.19
KOG2550	503	consensus IMP dehydrogenase/GMP reductase [Nucleot	89.24
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	88.22
cd02857	116	CD_pullulan_degrading_enzymes_N_term CD and pullul	87.83
PRK03705	658	glycogen debranching enzyme; Provisional	87.64
TIGR02103	898	pullul_strch alpha-1,6-glucosidases, pullulanase-t	86.36
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	85.05
COG4535	293	CorC Putative Mg2+ and Co2+ transporter CorC [Inor	84.91
PF01357	82	Pollen_allerg_1: Pollen allergen; InterPro: IPR007	84.77
KOG0470	757	consensus 1,4-alpha-glucan branching enzyme/starch	81.96
KOG0476	931	consensus Cl- channel CLC-2 and related proteins (	81.12
PLN03244	872	alpha-amylase; Provisional	80.44

>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]

Probab=99.95  E-value=8.8e-28  Score=218.11  Aligned_cols=161  Identities=16%  Similarity=0.314  Sum_probs=140.6

Q ss_pred             CCchhhhhcCCCCCCCCCHHHHHH-----HHHhhhhhccccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeE
Q 020637          120 NMEVDDVVMRPEGFAQYSEADLQL-----SRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLW  194 (323)
Q Consensus       120 ~~dl~~~~~~~~~~~~~s~~~l~~-----~~~~~~~~l~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~  194 (323)
                      ..|+++++++.++..||+++|+|.     |+++++|.+++.+|+|+|  |++|+++.+++++.+|+++|.+|+|+++||+
T Consensus       205 ~~Dld~aL~~~~E~lDIdrddLe~llr~~elqa~~R~~~~LtcadIM--SrdVvtv~~~ts~dhA~~ll~~H~ikaLPV~  282 (382)
T COG3448         205 SEDLDAALQRLGETLDIDRDDLERLLRETELQALRRRMGELTCADIM--SRDVVTVSTDTSIDHARKLLQEHRIKALPVL  282 (382)
T ss_pred             HHHHHHHHHhcCceecCCHHHHHHHHHHHHHHHHHHHhccccHHHhc--CccceecCCcCChHHHHHHHHHcCccccccc
Confidence            789999999999999999999977     999999999999999999  8999999999999999999999999999999


Q ss_pred             eCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHHHHHHHHHhhcccccCCCCCCCCCCcEEeCCCCCHHHHH
Q 020637          195 DDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVA  274 (323)
Q Consensus       195 d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~im~~~~vtv~pd~~L~eaa  274 (323)
                      |+ ..+++||||.+||.+   ....  +++          +.++    .+    +++.++.+|++++.|+.||++..|++
T Consensus       283 d~-~~rl~GiVt~~dl~~---~a~~--~p~----------qrlr----~~----~~~~vk~imt~~v~tv~pdtpa~~lv  338 (382)
T COG3448         283 DE-HRRLVGIVTQRDLLK---HARP--SPF----------QRLR----FL----RPPTVKGIMTTPVVTVRPDTPAVELV  338 (382)
T ss_pred             cc-ccceeeeeeHHHHhh---ccCc--chH----------HHhh----cc----CCCcccccccCcceeecCCCcHHHHH
Confidence            96 689999999999953   2211  111          1111    11    23456669999999999999999999


Q ss_pred             HHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637          275 LKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (323)
Q Consensus       275 ~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~  312 (323)
                      .++.+.+.|+|||+|.  + |   +++|||||+|++.+
T Consensus       339 p~lad~g~H~lpvld~--~-g---~lvGIvsQtDliaa  370 (382)
T COG3448         339 PRLADEGLHALPVLDA--A-G---KLVGIVSQTDLIAA  370 (382)
T ss_pred             HHhhcCCcceeeEEcC--C-C---cEEEEeeHHHHHHH
Confidence            9999999999999996  3 5   89999999999988

>cd02859 AMPKbeta_GBD_like AMP-activated protein kinase (AMPK) beta subunit glycogen binding domain (GBD)

Probab=99.93  E-value=1.3e-25  Score=170.86  Aligned_cols=79  Identities=46%  Similarity=0.944  Sum_probs=74.0

Q ss_pred             eeEEEEEeeCCCceEEEEeccCCCCCCCCCCCCCCCCCeEEEEEEeCCceEEEEEEEcCeeecCCCCCeeeCCCCccceE
Q 020637           20 LVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGVVNCV   99 (323)
Q Consensus        20 ~~~v~F~w~~~~~~V~l~Gsf~~W~~~~~m~~~~~~~g~~~~~~~LppG~y~YkFiVDG~w~~d~~~p~~~d~~G~~nnv   99 (323)
                      +++|+|+|+++|++|+|+|||++|++..||.+.+  .+ |++++.||||.|+|||+|||.|.+||++|++.|++|+.||+
T Consensus         1 ~~~v~f~~~~~a~~V~v~G~F~~W~~~~pm~~~~--~~-~~~~~~L~~g~y~YkF~Vdg~w~~d~~~~~~~d~~G~~NN~   77 (79)
T cd02859           1 MVPTTFVWPGGGKEVYVTGSFDNWKKKIPLEKSG--KG-FSATLRLPPGKYQYKFIVDGEWRHSPDLPTETDDEGNVNNV   77 (79)
T ss_pred             CeEEEEEEcCCCcEEEEEEEcCCCCccccceECC--CC-cEEEEEcCCCCEEEEEEECCEEEeCCCCCccCCCCCcEeee
Confidence            4799999999999999999999999878999875  44 99999999999999999999999999999999999999999


Q ss_pred             EE
Q 020637          100 YI  101 (323)
Q Consensus       100 l~  101 (323)
                      |.
T Consensus        78 i~   79 (79)
T cd02859          78 ID   79 (79)
T ss_pred             EC
Confidence            84

AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as a alpha-beta-gamma heterotrimer. This domain is the glycogen binding domain of the beta subunit.

>cd02861 E_set_proteins_like E or "early" set-like proteins

Probab=99.80  E-value=2.3e-19  Score=137.34  Aligned_cols=77  Identities=38%  Similarity=0.752  Sum_probs=69.1

Q ss_pred             eEEEEEeeC-CCceEEEEeccCCCCCCCCCCCCCCCCCeEEEEEEeCCceEEEEEEEcCeee-cCCCCCe-eeCCCCccc
Q 020637           21 VPVRFIWPN-GGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWR-HDENQPH-VSGNYGVVN   97 (323)
Q Consensus        21 ~~v~F~w~~-~~~~V~l~Gsf~~W~~~~~m~~~~~~~g~~~~~~~LppG~y~YkFiVDG~w~-~d~~~p~-~~d~~G~~n   97 (323)
                      ++++|+|.+ .+++|+|+|+|++|+ ..+|++.+  +|.|++++.|+||.|+|||+|||.|. .||.++. ..|++|+.|
T Consensus         2 ~~vtf~~~ap~a~~V~v~G~fn~W~-~~~m~~~~--~G~w~~~~~l~~G~y~Ykf~vdg~~~~~DP~~~~~~~~~~g~~n   78 (82)
T cd02861           2 VPVVFAYRGPEADSVYLAGSFNNWN-AIPMEREG--DGLWVVTVELRPGRYEYKFVVDGEWVIVDPNAAAYVDDGFGGKN   78 (82)
T ss_pred             ccEEEEEECCCCCEEEEEeECCCCC-cccCEECC--CCcEEEEEeCCCCcEEEEEEECCEEeeCCCCCCceecCCCCccc
Confidence            589999986 569999999999998 47999864  69999999999999999999999998 9999985 668899999


Q ss_pred             eEE
Q 020637           98 CVY  100 (323)
Q Consensus        98 nvl  100 (323)
                      |+|
T Consensus        79 ~v~   81 (82)
T cd02861          79 AVF   81 (82)
T ss_pred             eEc
Confidence            987

These alpha amylase-like sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.

>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

Probab=99.78  E-value=1e-18  Score=156.54  Aligned_cols=118  Identities=19%  Similarity=0.309  Sum_probs=101.8

Q ss_pred             cccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhH
Q 020637          155 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTI  234 (323)
Q Consensus       155 ~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i  234 (323)
                      .++.++|  |++++++++++||++|.++|.+++|+++||+|.  ++++|++|.+|+.+++....     +.         
T Consensus       172 ~~V~~~~--s~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~--dk~vGiit~~dI~~aia~g~-----~~---------  233 (294)
T COG2524         172 EKVKNLM--SKKLITVRPDDTLREAAKLFYEKGIRGAPVVDD--DKIVGIITLSDIAKAIANGN-----LD---------  233 (294)
T ss_pred             chhhhhc--cCCceEecCCccHHHHHHHHHHcCccCCceecC--CceEEEEEHHHHHHHHHcCC-----cc---------
Confidence            4566678  799999999999999999999999999999984  39999999999988776431     10         


Q ss_pred             HHHHHHHHHhhcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637          235 SAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (323)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~  312 (323)
                      .                .+.++|++.++++..|+.++||+++|..++++||-|+|+  + |   +++||||++|||+.
T Consensus       234 ~----------------kV~~~M~k~vitI~eDe~i~dAir~M~~~nVGRLlV~ds--~-g---kpvGiITrTDIL~~  289 (294)
T COG2524         234 A----------------KVSDYMRKNVITINEDEDIYDAIRLMNKNNVGRLLVTDS--N-G---KPVGIITRTDILTR  289 (294)
T ss_pred             c----------------cHHHHhccCCceEcCchhHHHHHHHHHhcCcceEEEEcc--C-C---cEEEEEehHHHHHH
Confidence            0                122369999999999999999999999999999999996  3 5   89999999999975

>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.75  E-value=1.9e-17  Score=130.41  Aligned_cols=97  Identities=43%  Similarity=0.706  Sum_probs=85.7

Q ss_pred             CeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHHHHHHHHHhh
Q 020637          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN  245 (323)
Q Consensus       166 ~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~~  245 (323)
                      +++++++++++.+|+++|.++++.++||+|+++++++|+||..|+++.                                
T Consensus         2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~--------------------------------   49 (98)
T cd04618           2 KLVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILI--------------------------------   49 (98)
T ss_pred             eEEEECCCCcHHHHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhh--------------------------------
Confidence            689999999999999999999999999999645899999999998420                                


Q ss_pred             cccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637          246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (323)
Q Consensus       246 ~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~  312 (323)
                                 +.  ++++.|+++|.+|+++|.+++++++||+|+  ++|   +++||||.+||+++
T Consensus        50 -----------~~--~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~--~~~---~~~giit~~d~~~~   98 (98)
T cd04618          50 -----------LR--LVSIHPERSLFDAALLLLKNKIHRLPVIDP--STG---TGLYILTSRRILKF   98 (98)
T ss_pred             -----------ee--eEEeCCCCcHHHHHHHHHHCCCCEeeEEEC--CCC---CceEEeehhhhhcC
Confidence                       11  678999999999999999999999999985  325   79999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>KOG1616 consensus Protein involved in Snf1 protein kinase complex assembly [Carbohydrate transport and metabolism]

Probab=99.69  E-value=6.3e-17  Score=151.23  Aligned_cols=90  Identities=36%  Similarity=0.690  Sum_probs=82.7

Q ss_pred             CCeeeEEEEEeeCCCceEEEEeccCCCCCCCCCCCCCCCCCeEEEEEEeCCceEEEEEEEcCeeecCCCCCeeeCCCCcc
Q 020637           17 GSILVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGVV   96 (323)
Q Consensus        17 ~~~~~~v~F~w~~~~~~V~l~Gsf~~W~~~~~m~~~~~~~g~~~~~~~LppG~y~YkFiVDG~w~~d~~~p~~~d~~G~~   96 (323)
                      .....+++|+|..+++.|+|+|+|.+|...++|.+..+..|.|+.++.|++|.|+|||+|||.|++|++.|++.|..|+.
T Consensus        76 ~~~~~pvvi~W~~gg~~v~v~gS~~nWk~~~~l~~~~~~~~~f~~~~dL~~g~~~~kf~vdge~~~s~~~pta~d~~Gn~  155 (289)
T KOG1616|consen   76 REQGRPTVIRWSQGGKEVYVDGSFGNWKTKIPLVRSGKNVGGFSTILDLPPGEHEYKFIVDGEWRHDPDLPTAEDSLGNL  155 (289)
T ss_pred             cccCCceEEEecCCCceEEEecccccccccccceecCCCcccceeeEecCCceEEEEEecCCceecCCCCcccccccCCc
Confidence            56689999999999999999999999999899998765556699999999999999999999999999999999999999


Q ss_pred             ceEEEecCCC
Q 020637           97 NCVYIAVPQP  106 (323)
Q Consensus        97 nnvl~v~~~~  106 (323)
                      ||++.|....
T Consensus       156 ~N~i~v~~~~  165 (289)
T KOG1616|consen  156 NNILEVQDPD  165 (289)
T ss_pred             ccceEecCcc
Confidence            9999994433

>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]

Probab=99.68  E-value=1.7e-16  Score=153.73  Aligned_cols=155  Identities=35%  Similarity=0.610  Sum_probs=124.0

Q ss_pred             HHHhhhhhccccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCC
Q 020637          144 SRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSN  223 (323)
Q Consensus       144 ~~~~~~~~l~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~  223 (323)
                      ....+.+||..++||+++|++.+++++|..+++++||.+|..++++++||||....+++|+++.+||+.++...+.....
T Consensus        55 ~~~~~~~~~~~~~~~~~~p~~~~l~~~d~~~~v~~a~~~l~~~~~~~~p~~~~~~~~~~g~~~~~d~i~~~~~~~~~~~~  134 (381)
T KOG1764|consen   55 AVDTLSKFMKSHTCYDLLPTSSKLVVFDTKLSVKKAFNALVQNGVRAAPLWDSKKQQFVGMLTITDFITVLLRYYKSKSS  134 (381)
T ss_pred             hhHHHHHHHhccCcccccCCcceeEEeeCCCcHHHHHHHHHhhceeeeccccCccceeEEEEEHHHHHHHHHHhhccCCc
Confidence            56689999999999999999999999999999999999999999999999999889999999999999988877653211


Q ss_pred             C-ChhhhhhhhHHHHHHHHHHhhcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEE
Q 020637          224 L-TEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILY  302 (323)
Q Consensus       224 l-~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvG  302 (323)
                      . ..+.++...+..+++.....         +..-.++++.+.|+.++.+++..++++++|||||+|.  +.+   .+++
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~i~p~~s~l~~~~~l~~~~~~rvpv~d~--~~~---~v~~  200 (381)
T KOG1764|consen  135 LDNIEVLEDSQLSKRREVECLL---------KETLKPPFVSISPESSLLDAVLLLIKSRIHRVPVIDP--ETG---EVLY  200 (381)
T ss_pred             HHHHhhhhhhhccccchhhhhh---------ccccCCCceeecCcHHHHHHHHHHHhCCccceeeecc--ccc---ceee
Confidence            1 11122222222233321111         1123455599999999999999999999999999994  445   7999


Q ss_pred             Eeeccccccc
Q 020637          303 LASLSDILKC  312 (323)
Q Consensus       303 IIT~~dIl~~  312 (323)
                      ++|++.||++
T Consensus       201 ilt~~rIl~~  210 (381)
T KOG1764|consen  201 ILTQRRILKF  210 (381)
T ss_pred             ehhHHHHHHH
Confidence            9999999999

>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.67  E-value=2e-15  Score=122.01  Aligned_cols=119  Identities=20%  Similarity=0.254  Sum_probs=92.9

Q ss_pred             CeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHHHHHHHHHhh
Q 020637          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN  245 (323)
Q Consensus       166 ~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~~  245 (323)
                      +++++++++++.+|++.|.++++.++||+|+ +++++|++|..|++.++...... ...  .     .   ..+....  
T Consensus         2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~~~Giv~~~dl~~~~~~~~~~-~~~--~-----~---~~~~~~~--   67 (120)
T cd04641           2 NIATARPDTPLIDVLDMLVERRVSALPIVDE-NGKVVDVYSRFDVINLAKEGAYN-NLD--L-----T---VGEALER--   67 (120)
T ss_pred             CcEEEcCCCCHHHHHHHHHHcCCCeeeEECC-CCeEEEEEeHHHHHHHHhcCccc-ccc--C-----C---HHHHHhh--
Confidence            5788999999999999999999999999995 78999999999998654321100 000  0     0   1111000  


Q ss_pred             cccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637          246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (323)
Q Consensus       246 ~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~  312 (323)
                              ..+|..++.++.+++++.+|+.+|.+++++++||+|+  + |   +++||||++||+++
T Consensus        68 --------~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~--~-~---~~~Givt~~di~~~  120 (120)
T cd04641          68 --------RSQDFEGVRTCSPDDCLRTIFDLIVKARVHRLVVVDE--N-K---RVEGIISLSDILQF  120 (120)
T ss_pred             --------cccCCCCCeEEcCCCcHHHHHHHHHhcCccEEEEECC--C-C---CEEEEEEHHHhhcC
Confidence                    1257788999999999999999999999999999985  3 5   79999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.62  E-value=5.9e-15  Score=120.34  Aligned_cols=125  Identities=26%  Similarity=0.388  Sum_probs=93.4

Q ss_pred             CeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHHHHHHHHHhh
Q 020637          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN  245 (323)
Q Consensus       166 ~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~~  245 (323)
                      +++++++++++.+|++.|.++++..+||+|+ .++++|+||..|+++.........      ...   ............
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~-~~~~~Giv~~~dl~~~~~~~~~~~------~~~---~~~~~~~~~~~~   71 (126)
T cd04642           2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDE-KGKLIGNISASDLKGLLLSPDDLL------LYR---TITFKELSEKFT   71 (126)
T ss_pred             CeEEECCCccHHHHHHHHHHhCCCcccEECC-CCcEEEEEEHHHhhhhhcCcchhh------ccc---chhhhhhhhhcc
Confidence            6789999999999999999999999999995 689999999999976442111000      000   000000000000


Q ss_pred             cccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637          246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (323)
Q Consensus       246 ~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~  312 (323)
                            .....|..+++++.+++++.+|+.+|.+++++++||+|+  + +   +++|+||.+||++|
T Consensus        72 ------~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~--~-~---~~~Giit~~dil~~  126 (126)
T cd04642          72 ------DSDGVKSRPLITCTPSSTLKEVITKLVANKVHRVWVVDE--E-G---KPIGVITLTDIISI  126 (126)
T ss_pred             ------cccccccCCCeEECCCCcHHHHHHHHHHhCCcEEEEECC--C-C---CEEEEEEHHHHhcC
Confidence                  011257888999999999999999999999999999985  2 4   79999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism

Probab=99.62  E-value=6.2e-15  Score=117.68  Aligned_cols=110  Identities=12%  Similarity=0.199  Sum_probs=89.9

Q ss_pred             CeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHHHHHHHHHhh
Q 020637          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN  245 (323)
Q Consensus       166 ~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~~  245 (323)
                      +++++..++++.+|++.|.+++...+||+|+ +++++|+||..|++....    .       +        +...     
T Consensus         2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~-~~~~~G~v~~~dl~~~~~----~-------~--------~~~~-----   56 (111)
T cd04603           2 QTVSVNCENPLREAIKMINELGARAVVVVDE-ENKVLGQVTLSDLLEIGP----N-------D--------YETL-----   56 (111)
T ss_pred             ceEEeCCCCcHHHHHHHHHHcCCCEEEEEcC-CCCEEEEEEHHHHHhhcc----c-------c--------cccc-----
Confidence            4678999999999999999999999999995 789999999999864210    0       0        0000     


Q ss_pred             cccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637          246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (323)
Q Consensus       246 ~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~  312 (323)
                            .+.++|..++.++.+++++.+|+.+|.+++.+++||+|+  + |   +++|+||.+||++.
T Consensus        57 ------~v~~~~~~~~~~v~~~~~l~~al~~m~~~~~~~lpVvd~--~-~---~~~Giit~~di~~~  111 (111)
T cd04603          57 ------KVCEVYIVPVPIVYCDSKVTDLLRIFRETEPPVVAVVDK--E-G---KLVGTIYERELLRF  111 (111)
T ss_pred             ------ChhheeecCCcEECCCCcHHHHHHHHHHcCCCeEEEEcC--C-C---eEEEEEEhHHhhcC
Confidence                  011257888899999999999999999999999999985  3 5   79999999999873

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.60  E-value=3e-14  Score=114.84  Aligned_cols=112  Identities=21%  Similarity=0.270  Sum_probs=89.9

Q ss_pred             CeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHHHHHHHHHhh
Q 020637          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN  245 (323)
Q Consensus       166 ~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~~  245 (323)
                      +++++++++++.+|++.|.++++..+||+|. +++++|+||..|+++.+.....    .     ....   +.       
T Consensus         2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~-~~~~~Givt~~dl~~~~~~~~~----~-----~~~~---~~-------   61 (118)
T cd04617           2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDE-DGDLVGVVSRKDLLKASIGGAD----L-----QKVP---VG-------   61 (118)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCEEEEEcC-CCCEEEEEEHHHHHHHHHcCCC----c-----cCCC---HH-------
Confidence            5688999999999999999999999999995 6899999999999765431100    0     0000   11       


Q ss_pred             cccccCCCCCCCCC--CcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCC--CCcccEEEEeecccccc
Q 020637          246 LKRQMDGNGRPCPR--PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPA--GSCQEILYLASLSDILK  311 (323)
Q Consensus       246 ~~~~~~~~~~im~~--~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~--g~~~~lvGIIT~~dIl~  311 (323)
                               ++|.+  ++.++.+++++.+|+.+|.+++++++||+|+  ++  |   +++|+||++||++
T Consensus        62 ---------~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~--~~~~~---~l~Gvit~~~l~~  117 (118)
T cd04617          62 ---------VIMTRMPNITTTTPEESVLEAAKKLIEHQVDSLPVVEK--VDEGL---EVIGRITKTNITK  117 (118)
T ss_pred             ---------HHhCCCCCcEEECCCCcHHHHHHHHHHcCCCEeeEEeC--CCccc---eEEEEEEhhheec
Confidence                     14554  6889999999999999999999999999986  32  4   7999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>PRK10892 D-arabinose 5-phosphate isomerase; Provisional

Probab=99.59  E-value=1e-14  Score=138.85  Aligned_cols=124  Identities=11%  Similarity=0.173  Sum_probs=100.9

Q ss_pred             cccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhh
Q 020637          153 STHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETH  232 (323)
Q Consensus       153 ~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~  232 (323)
                      ...++.|+|...++++++.+++++.+|+++|.++++..+||+|+ +|+++|+||.+|+.+++..-    ..+        
T Consensus       200 ~~~~V~dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~-~g~lvGivt~~Dl~~~~~~~----~~~--------  266 (326)
T PRK10892        200 LLLRVSDIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDD-NMKIEGIFTDGDLRRVFDMG----IDL--------  266 (326)
T ss_pred             ccCcHHHHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcC-CCcEEEEEecHHHHHHHhcC----CCc--------
Confidence            56689999953338999999999999999999999988888884 78999999999986543210    000        


Q ss_pred             hHHHHHHHHHHhhcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637          233 TISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (323)
Q Consensus       233 ~i~~~~~~~~~~~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~  312 (323)
                           .+.           .+.++|+++++++.+++++.+|+.+|.++++++|||+|+    |   +++||||++||+++
T Consensus       267 -----~~~-----------~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~----~---~lvGiit~~dil~~  323 (326)
T PRK10892        267 -----RQA-----------SIADVMTPGGIRVRPGILAVDALNLMQSRHITSVLVADG----D---HLLGVLHMHDLLRA  323 (326)
T ss_pred             -----ccC-----------CHHHhcCCCCEEECCCCCHHHHHHHHHHCCCcEEEEeeC----C---EEEEEEEhHHhHhc
Confidence                 000           011268999999999999999999999999999999974    4   79999999999975

>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.59  E-value=3e-14  Score=114.12  Aligned_cols=112  Identities=26%  Similarity=0.417  Sum_probs=91.3

Q ss_pred             CeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHHHHHHHHHhh
Q 020637          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN  245 (323)
Q Consensus       166 ~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~~  245 (323)
                      +|.++.+++++.+|++.|.+++...+||+|+ .|+++|+||..|+++.+.......  .      .   ..+.       
T Consensus         2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~-~g~~~G~vt~~dl~~~~~~~~~~~--~------~---~~v~-------   62 (114)
T cd04619           2 RLAKIDVNATLQRAAKILGEPGIDLVVVCDP-HGKLAGVLTKTDVVRQMGRCGGPG--C------T---APVE-------   62 (114)
T ss_pred             ceEEECCCCcHHHHHHHHHhcCCCEEEEECC-CCCEEEEEehHHHHHHHhhcCCCc--c------c---CCHH-------
Confidence            5788999999999999999999999999995 789999999999976543211000  0      0   0011       


Q ss_pred             cccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeecccccc
Q 020637          246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (323)
Q Consensus       246 ~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~  311 (323)
                               ++|.++++++.+++++.+|+..|.+++++++||+|+   +|   +++|+||++|+++
T Consensus        63 ---------~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~~---~~~Gvi~~~dl~~  113 (114)
T cd04619          63 ---------NVMTRAVVSCRPGDLLHDVWQVMKQRGLKNIPVVDE---NA---RPLGVLNARDALK  113 (114)
T ss_pred             ---------HHhcCCCeeECCCCCHHHHHHHHHHcCCCeEEEECC---CC---cEEEEEEhHhhcc
Confidence                     147788999999999999999999999999999985   35   7999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.59  E-value=4.3e-14  Score=112.92  Aligned_cols=113  Identities=18%  Similarity=0.292  Sum_probs=91.2

Q ss_pred             CeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHHHHHHHHHhh
Q 020637          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN  245 (323)
Q Consensus       166 ~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~~  245 (323)
                      +++++.+++++.+|++.|.+++++.+||.|++.++++|+||..|+++.+........     +   .   .+.       
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~~~~~~~~~-----~---~---~v~-------   63 (114)
T cd04630           2 NVVTIDGLATVAEALQLMKEHGVSSLVVEKRRESDAYGIVTMRDILKKVVAEGRDPD-----R---V---NVY-------   63 (114)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCCEEEEEECCCCcEEEEEehHHHHHHHHhCCCCCC-----c---c---CHH-------
Confidence            578899999999999999999999999999533899999999999765432111000     0   0   011       


Q ss_pred             cccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637          246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (323)
Q Consensus       246 ~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~  312 (323)
                               ++|.++++++.+++++.+|+.+|.+++.+++||+|+    |   +++|+||..||+++
T Consensus        64 ---------~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~----~---~~~Gvi~~~dl~~~  114 (114)
T cd04630          64 ---------EIMTKPLISVSPDMDIKYCARLMERTNIRRAPVVEN----N---ELIGIISLTDIFLA  114 (114)
T ss_pred             ---------HHhcCCCeeECCCCCHHHHHHHHHHcCCCEeeEeeC----C---EEEEEEEHHHhhcC
Confidence                     147788999999999999999999999999999983    5   79999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.56  E-value=8.2e-14  Score=112.93  Aligned_cols=119  Identities=13%  Similarity=0.203  Sum_probs=90.2

Q ss_pred             CeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHHHHHHHHHhh
Q 020637          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN  245 (323)
Q Consensus       166 ~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~~  245 (323)
                      .++++..++++.+|++.|.++++.++||+|+++++++|++|..|+++.+.........   .+.      ..+...    
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~~Giv~~~dl~~~~~~~~~~~~~---~~~------~~~~~~----   68 (123)
T cd04627           2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFLWENARSFPG---LDP------LYPIPL----   68 (123)
T ss_pred             CceecCCCCCHHHHHHHHhhCCcceEEEEeCCCCcEEEEEEHHHHHHHHHHhHHhccc---hhh------hhhhhh----
Confidence            3577899999999999999999999999996338999999999998755422110000   000      000000    


Q ss_pred             cccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeecccc
Q 020637          246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDI  309 (323)
Q Consensus       246 ~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dI  309 (323)
                            ....+|..++.++.+++++.+|+.+|.+++++++||+|+  + |   +++|+||.+||
T Consensus        69 ------~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~--~-~---~~vGiit~~di  120 (123)
T cd04627          69 ------RDLTIGTSDVISINGDQPLIDALHLMHNEGISSVAVVDN--Q-G---NLIGNISVTDV  120 (123)
T ss_pred             ------hhcccCcCCceEeCCCCCHHHHHHHHHHcCCceEEEECC--C-C---cEEEEEeHHHh
Confidence                  011257899999999999999999999999999999985  3 4   79999999987

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.56  E-value=4.8e-14  Score=110.20  Aligned_cols=95  Identities=23%  Similarity=0.386  Sum_probs=83.9

Q ss_pred             CeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHHHHHHHHHhh
Q 020637          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN  245 (323)
Q Consensus       166 ~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~~  245 (323)
                      +++++++++++.+|++.|.+++++.+||+|+ .++++|++|..|++..                                
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~-~~~~~Giv~~~dl~~~--------------------------------   48 (96)
T cd04614           2 NVPTVWEETPLPVAVRIMELANVKALPVLDD-DGKLSGIITERDLIAK--------------------------------   48 (96)
T ss_pred             CccEeCCCCcHHHHHHHHHHcCCCeEEEECC-CCCEEEEEEHHHHhcC--------------------------------
Confidence            5788999999999999999999999999995 6899999999998310                                


Q ss_pred             cccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637          246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (323)
Q Consensus       246 ~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~  312 (323)
                                .+   +.++.+++++.+|+.+|.+++++++||+|+  + |   +++|+||++||+++
T Consensus        49 ----------~~---~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~--~-~---~~~Giit~~di~~~   96 (96)
T cd04614          49 ----------SE---VVTATKRTTVSECAQKMKRNRIEQIPIING--N-D---KLIGLLRDHDLLKP   96 (96)
T ss_pred             ----------CC---cEEecCCCCHHHHHHHHHHhCCCeeeEECC--C-C---cEEEEEEHHHhhcC
Confidence                      01   578999999999999999999999999985  3 5   79999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

Probab=99.54  E-value=9.8e-14  Score=112.09  Aligned_cols=124  Identities=17%  Similarity=0.310  Sum_probs=94.6

Q ss_pred             CCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHHHHHHHHH
Q 020637          164 SGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQ  243 (323)
Q Consensus       164 s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~  243 (323)
                      |+++++++++.++.+|++.|.++++..+||+|+ .|+++|+|+..|++..+.....  .    .....     . +.   
T Consensus         1 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~~Giv~~~~l~~~~~~~~~--~----~~~~~-----~-~~---   64 (124)
T cd04600           1 SRDVVTVTPDTSLEEAWALLRRHRIKALPVVDG-DRRLVGIVTQRDLLRHARPDGR--R----PLRGR-----L-RG---   64 (124)
T ss_pred             CCCcEEeCCCCCHHHHHHHHHHcCCceeeEECC-CCCEEEEEEHHHHHhhhccccc--c----hhhhh-----h-hc---
Confidence            467899999999999999999999999999985 5899999999999764431110  0    00000     0 00   


Q ss_pred             hhcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637          244 LNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (323)
Q Consensus       244 ~~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~  312 (323)
                      .   .....++++|.+.++++.+++++.+|+.+|.+++++++||+|+   +|   +++|+||++||+++
T Consensus        65 ~---~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~---~g---~~~Gvit~~di~~~  124 (124)
T cd04600          65 R---DKPETVGDIMSPPVVTVRPDTPIAELVPLLADGGHHHVPVVDE---DR---RLVGIVTQTDLIAA  124 (124)
T ss_pred             c---cccccHHHhccCCCeeeCCCCcHHHHHHHHHhcCCCceeEEcC---CC---CEEEEEEhHHhhcC
Confidence            0   0001122368889999999999999999999999999999984   35   79999999999875

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

Probab=99.53  E-value=2e-14  Score=141.37  Aligned_cols=120  Identities=20%  Similarity=0.328  Sum_probs=102.4

Q ss_pred             cccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhH
Q 020637          155 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTI  234 (323)
Q Consensus       155 ~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i  234 (323)
                      ..+.+++  ..+.+++++.+++++|.+.|.++|+.++.++|. .+...||||.+|+...+..-+..   .          
T Consensus       149 trv~~~~--~~~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~-~~~~~GIvT~~dl~~~v~~~g~~---~----------  212 (610)
T COG2905         149 TRVGEVK--TLPAVTVSPQASIQDAARKMKDEGVSSLVVLDD-SGPLLGIVTRKDLRSRVIADGRS---K----------  212 (610)
T ss_pred             HHHHHHh--cCCCcccCccCcHHHHHHHHHhcCCCeEEEEcC-CCCccceeehHHHHHHHHhcCCC---c----------
Confidence            4677888  578899999999999999999999999999995 78999999999997755432210   0          


Q ss_pred             HHHHHHHHHhhcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637          235 SAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (323)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~  312 (323)
                                     ...++++|+.|+++|.+.+-++||+.+|++++||||||.++    |   +++||||.+|||+.
T Consensus       213 ---------------~~~V~evmT~p~~svd~~~~~feAml~m~r~~I~hl~V~e~----g---q~~Gilt~~dIl~l  268 (610)
T COG2905         213 ---------------TQKVSEVMTSPVISVDRGDFLFEAMLMMLRNRIKHLPVTED----G---QPLGILTLTDILRL  268 (610)
T ss_pred             ---------------ccchhhhhccCceeecCcchHHHHHHHHHHhCCceeeeecC----C---eeeEEeeHHHHHHh
Confidence                           01133479999999999999999999999999999999974    6   89999999999998

>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.51  E-value=4.1e-13  Score=106.22  Aligned_cols=112  Identities=21%  Similarity=0.389  Sum_probs=91.1

Q ss_pred             CeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHHHHHHHHHhh
Q 020637          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN  245 (323)
Q Consensus       166 ~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~~  245 (323)
                      ++++++++.++.+|.+.|.++++..+||+|+ .++++|+++..|+++.+........        ..   .+.       
T Consensus         2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~~Giv~~~~l~~~~~~~~~~~~--------~~---~~~-------   62 (113)
T cd04623           2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDD-GGRLVGIFSERDIVRKVALRGASAL--------DT---PVS-------   62 (113)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeEEEECC-CCCEEEEEehHHHHHHHhhcCCCcc--------cc---CHH-------
Confidence            5678899999999999999999999999995 5899999999999765532111000        00   011       


Q ss_pred             cccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637          246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (323)
Q Consensus       246 ~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~  312 (323)
                               ++|..++.++.+++++.+++.+|.+++.+++||+|+    |   +++|+||.+||+++
T Consensus        63 ---------~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~~----~---~~~Gvit~~di~~~  113 (113)
T cd04623          63 ---------EIMTRNVITVTPDDTVDEAMALMTERRFRHLPVVDG----G---KLVGIVSIGDVVKA  113 (113)
T ss_pred             ---------HhcCCCcEEECCCCcHHHHHHHHHHcCCCEeEEEeC----C---EEEEEEEHHHhhcC
Confidence                     257778999999999999999999999999999983    4   79999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

Probab=99.51  E-value=4.5e-13  Score=107.05  Aligned_cols=114  Identities=18%  Similarity=0.283  Sum_probs=90.9

Q ss_pred             CeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHHHHHHHHHhh
Q 020637          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN  245 (323)
Q Consensus       166 ~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~~  245 (323)
                      ++.++++++++.+|++.|.+.++..+||.|+ .++++|+++..|+.+.+........            ..+.       
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~~G~v~~~dl~~~~~~~~~~~~------------~~~~-------   61 (115)
T cd04593           2 PPPVLSATTPLREAAEQLIESKHGSALVVDR-DGGVVGIITLPDLLRALEADEAGEP------------SAVD-------   61 (115)
T ss_pred             CCcEeCCCCCHHHHHHHHHhCCCcEEEEEcC-CCCEEEEEEHHHHHHHHhccccccc------------ccHH-------
Confidence            4568889999999999999999999999995 6899999999999765432110000            0011       


Q ss_pred             cccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637          246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (323)
Q Consensus       246 ~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~  312 (323)
                               ++|..+++++.+++++.+|+.+|.+++.+++||+|+. ..|   +++|+||.+||+++
T Consensus        62 ---------~~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~Vvd~~-~~~---~~~Gvit~~di~~~  115 (115)
T cd04593          62 ---------EVATPPLLTVHPDEPLAHALDRMASRGLRQLPVVDRG-NPG---QVLGLLTRENVLLA  115 (115)
T ss_pred             ---------HhccCCceEECCCCCHHHHHHHHHHcCCceeeEEeCC-CCC---eEEEEEEhHHhhcC
Confidence                     1477889999999999999999999999999999851 114   79999999999875

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d

>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional

Probab=99.50  E-value=1.5e-13  Score=130.51  Aligned_cols=123  Identities=16%  Similarity=0.230  Sum_probs=100.8

Q ss_pred             ccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhh
Q 020637          154 THTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHT  233 (323)
Q Consensus       154 ~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~  233 (323)
                      ..++.|+|-.++.++++.+++++.+|++.|.+++...+||+|+ +|+++|+||..|+.+.+..- .   ..     .   
T Consensus       196 ~~~V~~im~~~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~-~g~~iG~vt~~dl~~~~~~~-~---~~-----~---  262 (321)
T PRK11543        196 LNKVHHLMRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCDA-QQQVQGVFTDGDLRRWLVGG-G---AL-----T---  262 (321)
T ss_pred             HhHHHHHhccCCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcC-CCcEEEEecHHHHHHHHhCC-C---Cc-----C---
Confidence            6789999943323999999999999999999999999999995 78999999999987644311 0   00     0   


Q ss_pred             HHHHHHHHHHhhcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637          234 ISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (323)
Q Consensus       234 i~~~~~~~~~~~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~  312 (323)
                       ..+.                ++|+++++++.+++++.+|+.+|.++++.++||+|+   +|   +++|+||+.||+++
T Consensus       263 -~~v~----------------~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~~---~lvGvIt~~di~~~  318 (321)
T PRK11543        263 -TPVN----------------EAMTRGGTTLQAQSRAIDAKEILMKRKITAAPVVDE---NG---KLTGAINLQDFYQA  318 (321)
T ss_pred             -CcHH----------------HhcCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcC---CC---eEEEEEEHHHHHhc
Confidence             0011                258889999999999999999999999999999985   34   79999999999975

>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

Probab=99.50  E-value=4e-13  Score=107.00  Aligned_cols=110  Identities=21%  Similarity=0.294  Sum_probs=89.4

Q ss_pred             CeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHHHHHHHHHhh
Q 020637          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN  245 (323)
Q Consensus       166 ~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~~  245 (323)
                      +.++++.+.++.+|++.|.+++++.+||.|+ +++++|++|..|++..+.....    .     .    ..+.+      
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~-~~~~~G~v~~~dl~~~~~~~~~----~-----~----~~v~~------   62 (113)
T cd04607           3 KQLLVSPDASILDALRKIDKNALRIVLVVDE-NGRLLGTVTDGDIRRALLKGLS----L-----D----DPVSE------   62 (113)
T ss_pred             cceEECCCCCHHHHHHHHHhcCcCEEEEECC-CCCEEEEEEcHHHHHHHhcCCC----c-----C----CCHHH------
Confidence            4578899999999999999999999999985 6899999999999754431100    0     0    00111      


Q ss_pred             cccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeecccccc
Q 020637          246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (323)
Q Consensus       246 ~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~  311 (323)
                                +|..++.++.+++++.+|+.+|.+++.+++||+|+   .|   +++|+||.+||+.
T Consensus        63 ----------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~---~~---~~~Gvit~~di~~  112 (113)
T cd04607          63 ----------VMNRNPITAKVGSSREEILALMRERSIRHLPILDE---EG---RVVGLATLDDLLS  112 (113)
T ss_pred             ----------hhcCCCEEEcCCCCHHHHHHHHHHCCCCEEEEECC---CC---CEEEEEEhHHhcc
Confidence                      46778899999999999999999999999999985   35   7999999999975

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=99.50  E-value=1.1e-13  Score=113.32  Aligned_cols=112  Identities=13%  Similarity=0.205  Sum_probs=89.7

Q ss_pred             CeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHHHHHHHHHhh
Q 020637          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN  245 (323)
Q Consensus       166 ~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~~  245 (323)
                      +++++.++.++.+|++.|.++++..+||+|+ +++++|++|..|++..+..-.....                       
T Consensus         3 ~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~-~~~~~Gii~~~dl~~~~~~~~~~~~-----------------------   58 (124)
T cd04608           3 APVTVLPTVTCAEAIEILKEKGFDQLPVVDE-SGKILGMVTLGNLLSSLSSGKVQPS-----------------------   58 (124)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCEEEEEcC-CCCEEEEEEHHHHHHHHHHhccCCC-----------------------
Confidence            5788999999999999999999999999995 6899999999999765442111000                       


Q ss_pred             cccccCCCCCCCCCCcEEeCCCCCHHHHHHHHH---------HcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637          246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKIL---------QNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (323)
Q Consensus       246 ~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~---------~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~  312 (323)
                           ..+.++|.++++++.+++++.+++++|.         +.+.+++||+|+   +|   +++||||.+||+++
T Consensus        59 -----~~v~~im~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~---~~---~~~Givt~~Dl~~~  123 (124)
T cd04608          59 -----DPVSKALYKQFKRVNKNDTLGKLSRILETDAFLLVFFEQISSAAIGKEK---QE---KPIGIVTKIDLLSY  123 (124)
T ss_pred             -----CcHHHHhhccceecCCCCCHHHHHhhcccCCceEEEecccccccccccc---cc---ceEEEEehhHhhhh
Confidence                 0012368999999999999999999653         447899999984   35   89999999999975

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten

>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]

Probab=99.50  E-value=1.3e-13  Score=115.69  Aligned_cols=120  Identities=16%  Similarity=0.330  Sum_probs=95.4

Q ss_pred             cccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhh
Q 020637          153 STHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETH  232 (323)
Q Consensus       153 ~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~  232 (323)
                      ...+|..+|  +++|+.+.++.++.+|+++|.++|++-+||+++  +++||-+|+.|+++.+..-.        +++..+
T Consensus        63 ~~ita~~iM--~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~--~k~VGsItE~~iv~~~le~~--------e~i~~~  130 (187)
T COG3620          63 TRITAKTIM--HSPVVSVSPDDSISDVVNLMRDKGISQLPVIEE--DKVVGSITENDIVRALLEGM--------ESIRSL  130 (187)
T ss_pred             ceEeHhhhc--cCCeeEECchhhHHHHHHHHHHcCCccCceeeC--CeeeeeecHHHHHHHHhccc--------cchhhh
Confidence            568999999  789999999999999999999999999999984  79999999999988665321        111110


Q ss_pred             hHHHHHHHHHHhhcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637          233 TISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (323)
Q Consensus       233 ~i~~~~~~~~~~~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~  312 (323)
                         .++                ++|..++.+|+|+++|...-.++- + ...+-|+++    |   +++||||+.||++.
T Consensus       131 ---~vr----------------~vM~e~fP~Vs~~~~l~vI~~LL~-~-~~AVlV~e~----G---~~vGIITk~DI~k~  182 (187)
T COG3620         131 ---RVR----------------EVMGEPFPTVSPDESLNVISQLLE-E-HPAVLVVEN----G---KVVGIITKADIMKL  182 (187)
T ss_pred             ---hHH----------------HHhcCCCCcCCCCCCHHHHHHHHh-h-CCeEEEEeC----C---ceEEEEeHHHHHHH
Confidence               112                269999999999999966655554 3 356777763    5   79999999999986

>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

Probab=99.50  E-value=2.3e-13  Score=112.26  Aligned_cols=132  Identities=20%  Similarity=0.284  Sum_probs=94.4

Q ss_pred             CCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhH--HHH-HHH
Q 020637          164 SGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTI--SAW-KVG  240 (323)
Q Consensus       164 s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i--~~~-~~~  240 (323)
                      |..++++++++++.+|+++|.++++..+||+|+ .++++|+++..|+++.+.......    .........  ... ...
T Consensus         1 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~~Gvi~~~dl~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~   75 (135)
T cd04586           1 TTDVVTVSPETSVAEAARLMLDNHISGLPVVDD-DGRLVGIVSEGDLLRRAELGTERR----RARWLDLLAGAEELAAAF   75 (135)
T ss_pred             CCCCEEeCCCCCHHHHHHHHHHcCCCCceEECC-CCCEEEEeeHHHHHHHhcccCcch----hhhHHHHhcchHHHHHHH
Confidence            457889999999999999999999999999995 689999999999976443211000    000000000  000 000


Q ss_pred             HHHhhcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637          241 KLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (323)
Q Consensus       241 ~~~~~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~  312 (323)
                      .. .    ....+.++|.+++.++.+++++.+|+.+|.+++.+++||+|.    |   +++||||+.||+++
T Consensus        76 ~~-~----~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd~----g---~~~Gvit~~di~~~  135 (135)
T cd04586          76 VR-S----HGRKVADVMTRPVVTVGEDTPLAEVAELMEEHRIKRVPVVRG----G---RLVGIVSRADLLRA  135 (135)
T ss_pred             HH-h----cCCCHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCccCEecC----C---EEEEEEEhHhhhcC
Confidence            00 0    001122468888999999999999999999999999999973    5   79999999999875

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.50  E-value=4.8e-13  Score=109.06  Aligned_cols=126  Identities=18%  Similarity=0.314  Sum_probs=92.5

Q ss_pred             CeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhc-CCCCCCChhhhhhhhHHHHHHHHHHh
Q 020637          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELG-TNGSNLTEEELETHTISAWKVGKLQL  244 (323)
Q Consensus       166 ~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~-~~~~~l~~~~l~~~~i~~~~~~~~~~  244 (323)
                      +++++.+++++.+|+++|.++++..+||+|+ .++++|++|..|+...+.... .+.  .  ... ........+     
T Consensus         2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~-~~~~~G~it~~dl~~~~~~~~~~~~--~--~~~-~~~~~~~~~-----   70 (128)
T cd04632           2 DVITVREDDSVGKAINVLREHGISRLPVVDD-NGKLTGIVTRHDIVDFVVRDRDKAR--T--GDR-SGEKERMLD-----   70 (128)
T ss_pred             CceEeCCCCCHHHHHHHHHHcCCCEEEEECC-CCcEEEEEEHHHHHHHHhhhhhhcc--h--hhh-hhhhhhhcc-----
Confidence            4678899999999999999999999999995 689999999999976543211 000  0  000 000000000     


Q ss_pred             hcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637          245 NLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (323)
Q Consensus       245 ~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~  312 (323)
                            ..+.++|.++++++.+++++.+|+.+|.+++++.+||++.+ ++|   +++|+||.+||+++
T Consensus        71 ------~~~~~~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~-~~~---~~~Gvit~~di~~~  128 (128)
T cd04632          71 ------LPVYDAMSSPVITASPNDSVRDAVDRMLENDDSSVVVVTPD-DDT---KVVGILTKKDVLRA  128 (128)
T ss_pred             ------CcHHHHhcCCCceECCCCcHHHHHHHHHhCCCCeEeEeccC-CCC---cEEEEEEhHhhhcC
Confidence                  00123688889999999999999999999999999999531 235   79999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.49  E-value=4.2e-13  Score=111.47  Aligned_cols=131  Identities=17%  Similarity=0.229  Sum_probs=92.8

Q ss_pred             CeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHHHHHHHHHhh
Q 020637          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN  245 (323)
Q Consensus       166 ~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~~  245 (323)
                      +++++..++++.+|++.|.++++..+||+|+ .++++|++|..|+++.+......  ......   +.   +........
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~-~~~~~Giv~~~dl~~~~~~~~~~--~~~~~~---~~---~~~~~~~~~   72 (135)
T cd04621           2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDD-NGKPVGVITYRDLAFAEFEDNER--GLPKKS---IK---MKRKAGQKR   72 (135)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCCCcceEECC-CCCEEEEEeHHHHHHHhhccccc--ccchhh---hh---hhhhccccc
Confidence            4577899999999999999999999999995 78999999999998655321110  000000   00   000000000


Q ss_pred             c---ccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637          246 L---KRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (323)
Q Consensus       246 ~---~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~  312 (323)
                      .   ......+.++|..++.++.+++++.+|+..|.+++++++||+|+    |   +++|+||++||+++
T Consensus        73 ~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~----~---~~~Gvit~~di~~~  135 (135)
T cd04621          73 YRYVKEVPLVAEDIMTEEIITVSPNDDVVDAAKLMLEANISGLPVVDN----D---NIVGVITKTDICRE  135 (135)
T ss_pred             ccccccccccHHHhcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEeC----C---EEEEEEEHHHHhhC
Confidence            0   00001123468889999999999999999999999999999983    5   79999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=99.49  E-value=9.3e-13  Score=104.40  Aligned_cols=110  Identities=18%  Similarity=0.279  Sum_probs=89.2

Q ss_pred             CeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHHHHHHHHHhh
Q 020637          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN  245 (323)
Q Consensus       166 ~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~~  245 (323)
                      +.+++..+.++.+|.+.|.+++...+||.|+  ++++|+++..|++..+........            ..+.       
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~~~~~~~~~------------~~i~-------   60 (111)
T cd04589           2 PPLIVDASTSIRDAARLMREHGADALLVRDG--DPRLGIVTRTDLLDAVLLDGLPSS------------TPVG-------   60 (111)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEecC--CeEEEEEEHHHHHHHHHcCCCCCC------------CCHH-------
Confidence            5678899999999999999999999999984  789999999999764421100000            0011       


Q ss_pred             cccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637          246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (323)
Q Consensus       246 ~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~  312 (323)
                               ++|.+++.++.+++++.+++.+|.+++.+++||+|+    |   +++|+||..|+++|
T Consensus        61 ---------~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~----~---~~~G~it~~dl~~~  111 (111)
T cd04589          61 ---------EIATFPLITVDPDDFLFNALLLMTRHRIHRVVVREG----G---EVVGVLEQTDLLSF  111 (111)
T ss_pred             ---------HHhCCCcEEECCCCcHHHHHHHHHHhCccEEEEeeC----C---EEEEEEEhHHhhcC
Confidence                     147778999999999999999999999999999983    4   79999999999976

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or

>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.49  E-value=4.3e-13  Score=106.88  Aligned_cols=115  Identities=19%  Similarity=0.303  Sum_probs=88.6

Q ss_pred             CeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHHHHHHHHHhh
Q 020637          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN  245 (323)
Q Consensus       166 ~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~~  245 (323)
                      +++++..++++.+|++.|.++++..+||+|+ .++++|+++..|+++.+.....       .+...     ....     
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~~Giv~~~dl~~~~~~~~~-------~~~~~-----~~~~-----   63 (116)
T cd04643           2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDK-EGKYVGTISLTDILWKLKGLEN-------LDLER-----LVDL-----   63 (116)
T ss_pred             CcEEECCCCcHHHHHHHHHHCCCceeeeECC-CCcEEEEEeHHHHHHHhhccCc-------hhHHH-----HhCC-----
Confidence            5788999999999999999999999999995 6899999999999764421100       00000     0000     


Q ss_pred             cccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637          246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (323)
Q Consensus       246 ~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~  312 (323)
                            .+.++|.+++.++.+++++.+|+.+|.+++  .+||+|+   +|   +++|+||+.||+++
T Consensus        64 ------~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~--~~~Vv~~---~~---~~~Gvit~~dil~~  116 (116)
T cd04643          64 ------KVIDVMNTDVPVIIDDADIEEILHLLIDQP--FLPVVDD---DG---IFIGIITRREILKA  116 (116)
T ss_pred             ------cHHHHhcCCCceecCCCCHHHHHHHHhcCC--ceeEEeC---CC---eEEEEEEHHHhhcC
Confidence                  011257888999999999999999998865  5999985   35   89999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

Probab=99.47  E-value=1.2e-12  Score=103.46  Aligned_cols=108  Identities=19%  Similarity=0.385  Sum_probs=90.4

Q ss_pred             CCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHHHHHHHHHh
Q 020637          165 GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQL  244 (323)
Q Consensus       165 ~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~  244 (323)
                      ++++++.++.++.+|++.|.+++...+||.|+ .|+++|++|..|+++.+....   .             .+.+     
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~~G~v~~~~l~~~~~~~~---~-------------~~~~-----   59 (110)
T cd04605           2 RPVVTISEDASIKEAAKLMIEENINHLPVVDE-DGRLVGIVTSWDISKAVARDK---K-------------SVED-----   59 (110)
T ss_pred             CCCEEECCCCCHHHHHHHHHhCCCceEEEECC-CCcEEEEEeHHHHHHHHhhCc---c-------------CHHH-----
Confidence            57788999999999999999999999999985 689999999999965442100   0             0111     


Q ss_pred             hcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeecccccc
Q 020637          245 NLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (323)
Q Consensus       245 ~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~  311 (323)
                                 +|.+++.++.+++++.+|+++|.+++.+.+||+|+   +|   +++|+||+.||++
T Consensus        60 -----------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~---~~---~~~G~v~~~di~~  109 (110)
T cd04605          60 -----------IMTRNVITATPDEPIDVAARKMERHNISALPVVDA---EN---RVIGIITSEDISK  109 (110)
T ss_pred             -----------hcCCCCeEECCCCcHHHHHHHHHHhCCCEEeEECC---CC---cEEEEEEHHHhhh
Confidence                       46778899999999999999999999999999985   35   7999999999975

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50

Probab=99.47  E-value=1e-12  Score=104.84  Aligned_cols=109  Identities=17%  Similarity=0.248  Sum_probs=86.0

Q ss_pred             CeEEEecchhHHHHHHHHHHCC-CCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHHHHHHHHHh
Q 020637          166 KVTALDVNLAVKQAFHVLYEQG-LPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQL  244 (323)
Q Consensus       166 ~vv~vd~~~~v~~A~~~l~~~~-i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~  244 (323)
                      ++.++.+++++.+|++.|.+++ +..+||+|+ .++++|++|..|++........ .          .   .+.+     
T Consensus         2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~-~~~~~G~v~~~dl~~~~~~~~~-~----------~---~v~~-----   61 (114)
T cd04801           2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVDN-EGRYVGIISLADLRAIPTSQWA-Q----------T---TVIQ-----   61 (114)
T ss_pred             CcceeCCCCCHHHHHHHHhccCCceeEEEEcC-CCcEEEEEEHHHHHHHHHhhcc-c----------c---chhh-----
Confidence            5678899999999999998775 899999985 6899999999998754321100 0          0   0111     


Q ss_pred             hcccccCCCCCCCC--CCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeecccccc
Q 020637          245 NLKRQMDGNGRPCP--RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (323)
Q Consensus       245 ~~~~~~~~~~~im~--~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~  311 (323)
                                 +|.  .++.++.+++++.+|+..|.+++.+++||+|+   +|   +++||||..||++
T Consensus        62 -----------~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~~---~~---~~~Gvl~~~di~~  113 (114)
T cd04801          62 -----------VMTPAAKLVTVLSEESLAEVLKLLEEQGLDELAVVED---SG---QVIGLITEADLLR  113 (114)
T ss_pred             -----------hhcccccceEECCCCcHHHHHHHHHHCCCCeeEEEcC---CC---cEEEEEeccceec
Confidence                       343  23679999999999999999999999999985   34   7999999999986

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.47  E-value=7.1e-13  Score=105.28  Aligned_cols=114  Identities=22%  Similarity=0.345  Sum_probs=90.5

Q ss_pred             CCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHHHHHHHHHh
Q 020637          165 GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQL  244 (323)
Q Consensus       165 ~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~  244 (323)
                      ++++++.++.++.+|.+.|.++++..+||+|+ .++++|+|+..|+++.+.........       .   ..+.      
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~~G~v~~~~l~~~~~~~~~~~~~-------~---~~v~------   63 (114)
T cd04629           1 RNPVTFTPDMSVTEAVEKLLKSKISGGPVVDD-NGNLVGFLSEQDCLKQLLESSYHCDG-------V---ATVR------   63 (114)
T ss_pred             CCCeEeCCCCCHHHHHHHHHhcCCCCccEECC-CCeEEEEeehHHHHHHhhhhhhccCC-------C---ccHH------
Confidence            35678999999999999999999999999995 68999999999997644321000000       0   0011      


Q ss_pred             hcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637          245 NLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (323)
Q Consensus       245 ~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~  312 (323)
                                ++|..++.++.+++++.+|+.+|.+++.+++||+|+    |   +++|+||..||+++
T Consensus        64 ----------~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~----~---~~~Gvit~~di~~~  114 (114)
T cd04629          64 ----------DIMTTEVLTVSPDDSIVDLAQLMLKAKPKRYPVVDD----G---KLVGQISRRDVLRA  114 (114)
T ss_pred             ----------HHhccCceEECCCCcHHHHHHHHHHhCCCccCEEEC----C---EEEEEEEHHHHhcC
Confidence                      146778899999999999999999999999999983    5   79999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=99.47  E-value=6.7e-13  Score=104.21  Aligned_cols=105  Identities=11%  Similarity=0.150  Sum_probs=87.8

Q ss_pred             CeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHHHHHHHHHhh
Q 020637          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN  245 (323)
Q Consensus       166 ~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~~  245 (323)
                      +++++.++.++.+|++.|.++++..+||+|+ +|+++|++|..|++....    +               .+.       
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~-~g~~~Giv~~~dl~~~~~----~---------------~~~-------   54 (106)
T cd04582           2 EPITVRPDDPLSDALGLMDDSDLRALTVVDA-DGQPLGFVTRREAARASG----G---------------CCG-------   54 (106)
T ss_pred             CCcEecCCCcHHHHHHHHHhcCCCEEEEECC-CCCEEEEEeHHHHHHhcc----c---------------chh-------
Confidence            4678899999999999999999999999985 689999999999864210    0               011       


Q ss_pred             cccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637          246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (323)
Q Consensus       246 ~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~  312 (323)
                               ++|.+.+..+.+++++.+|+.+|.++++..+||+|+   .|   +++|+||.++++++
T Consensus        55 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~~---~~---~~~Gvi~~~~l~~~  106 (106)
T cd04582          55 ---------DHAEPFKVTVSVDDDLRIVLSRMFAHDMSWLPCVDE---DG---RYVGEVTQRSIADY  106 (106)
T ss_pred             ---------hhcccCCEEECCCCCHHHHHHHHHHCCCCeeeEECC---CC---cEEEEEEHHHhhcC
Confidence                     146777788999999999999999999999999985   34   79999999999864

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi

>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

Probab=99.47  E-value=1.3e-12  Score=103.40  Aligned_cols=109  Identities=19%  Similarity=0.308  Sum_probs=88.4

Q ss_pred             CeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHHHHHHHHHhh
Q 020637          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN  245 (323)
Q Consensus       166 ~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~~  245 (323)
                      +++++..++++.+|++.|.++++..+||+|++.++++|++|..|+++.+....   .    .       ..+..      
T Consensus         2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~~~~~~~~---~----~-------~~~~~------   61 (111)
T cd04590           2 DIVALDADDTLEEILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALAEGE---E----D-------LDLRD------   61 (111)
T ss_pred             ceEEEcCCCCHHHHHHHHhhCCCceEEEECCCCceEEEEEEHHHHHHHHHcCC---C----c-------CCHHH------
Confidence            57889999999999999999999999999953389999999999976543110   0    0       00111      


Q ss_pred             cccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeecccccc
Q 020637          246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (323)
Q Consensus       246 ~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~  311 (323)
                                +| +++.++.+++++.+|+.+|.+++.+++||+|+   .|   +++|+||++||++
T Consensus        62 ----------~~-~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~---~~---~~~Gvit~~di~~  110 (111)
T cd04590          62 ----------LL-RPPLFVPESTPLDDLLEEMRKERSHMAIVVDE---YG---GTAGLVTLEDILE  110 (111)
T ss_pred             ----------Hh-cCCeecCCCCcHHHHHHHHHhcCCcEEEEEEC---CC---CEEEEeEHHHhhc
Confidence                      24 46789999999999999999999999999985   35   7999999999985

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,

>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.47  E-value=1.1e-12  Score=103.91  Aligned_cols=110  Identities=22%  Similarity=0.319  Sum_probs=90.1

Q ss_pred             CeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHHHHHHHHHhh
Q 020637          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN  245 (323)
Q Consensus       166 ~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~~  245 (323)
                      +.+++++++++.+|.++|.+.+...+||+|+ +++++|+++..|+++.+.....       +       ..+.+      
T Consensus         2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~-~~~~~G~v~~~~l~~~~~~~~~-------~-------~~v~~------   60 (111)
T cd04639           2 HFETLSPADTLDDAADALLATTQHEFPVVDG-DGHLVGLLTRDDLIRALAEGGP-------D-------APVRG------   60 (111)
T ss_pred             CceEcCCCCcHHHHHHHHHHcCCCcceEECC-CCcEEEEeeHHHHHHHHHhcCC-------C-------CcHHH------
Confidence            4577899999999999999999999999995 6899999999999765432110       0       00111      


Q ss_pred             cccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637          246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (323)
Q Consensus       246 ~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~  312 (323)
                                +|..+++++.+++++.+|+..|.+++.+++||+|+  + |   +++|+||.+||+++
T Consensus        61 ----------~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~--~-~---~~~G~it~~dl~~~  111 (111)
T cd04639          61 ----------VMRRDFPTVSPSATLDAVLRLMQQGGAPAVPVVDG--S-G---RLVGLVTLENVGEL  111 (111)
T ss_pred             ----------HhcCCCcEECCCCcHHHHHHHHHhcCCceeeEEcC--C-C---CEEEEEEHHHhhcC
Confidence                      46778899999999999999999999999999985  2 4   79999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG0517 FOG: CBS domain [General function prediction only]

Probab=99.46  E-value=2e-12  Score=103.07  Aligned_cols=110  Identities=25%  Similarity=0.484  Sum_probs=91.2

Q ss_pred             CCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHHHHHHHHHh
Q 020637          165 GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQL  244 (323)
Q Consensus       165 ~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~  244 (323)
                      ..++++.++.++.+|+..|.++++.++||.+.  .+++|++|.+|+++.+........             .        
T Consensus         7 ~~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~--~~l~Giit~~di~~~~~~~~~~~~-------------~--------   63 (117)
T COG0517           7 KDVITVKPDTSVRDALLLMSENGVSAVPVVDD--GKLVGIITERDILRALAAGGKRLL-------------P--------   63 (117)
T ss_pred             CCCEEECCCCcHHHHHHHHHHcCCCEEEEeeC--CEEEEEEEHHHHHHHHhccCCccc-------------c--------
Confidence            67899999999999999999999999999984  389999999999876543211000             0        


Q ss_pred             hcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHH-cCCCEEeEEecCCCCCCcccEEEEeeccccc
Q 020637          245 NLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQ-NKVATVPIIHSTGPAGSCQEILYLASLSDIL  310 (323)
Q Consensus       245 ~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~-~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl  310 (323)
                              +..+|+.+++++.+++++.+++.+|.+ ++++++||+|+  +++   +++||+|.+||+
T Consensus        64 --------v~~v~~~~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~--~~~---~lvGivt~~di~  117 (117)
T COG0517          64 --------VKEVMTKPVVTVDPDTPLEEALELMVERHKIRRLPVVDD--DGG---KLVGIITLSDIL  117 (117)
T ss_pred             --------HHHhccCCcEEECCCCCHHHHHHHHHHHcCcCeEEEEEC--CCC---eEEEEEEHHHcC
Confidence                    112588899999999999999999999 79999999996  323   699999999985

>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.46  E-value=8.4e-13  Score=108.43  Aligned_cols=129  Identities=16%  Similarity=0.244  Sum_probs=93.7

Q ss_pred             CeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCC--CChhhhhhhhHHHHHHHHHH
Q 020637          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSN--LTEEELETHTISAWKVGKLQ  243 (323)
Q Consensus       166 ~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~--l~~~~l~~~~i~~~~~~~~~  243 (323)
                      +++++.+++++.+|++.|.++++..+||+|+ .++++|+++..|++..+.........  .....+..      .+....
T Consensus         2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~-~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~   74 (132)
T cd04636           2 DVITVKKDDTLRDVVEILLTGKISGVPVVDN-EGRVVGIVSEGDLIRKIYKGKGLFYVTLLYSVIFLD------ESKIKK   74 (132)
T ss_pred             CCeEeCCCCcHHHHHHHHHHhCCCccceECC-CCCEEEEEeHHHHHHHHhccCCcccccccccccccc------hHHHHH
Confidence            4678899999999999999999999999995 68999999999998755422110000  00000000      001111


Q ss_pred             hhcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637          244 LNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (323)
Q Consensus       244 ~~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~  312 (323)
                      +.  .  ..+.++|.++++.+.+++++.+|+.+|.+++.+++||+|+    |   +++|+||++||++|
T Consensus        75 ~~--~--~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~----~---~~iGvit~~dl~~~  132 (132)
T cd04636          75 LL--G--KKVEEIMTKKVITVDEDTTIEDVARIMSKKNIKRLPVVDD----G---KLVGIISRGDIIRS  132 (132)
T ss_pred             Hc--C--CCHHHhccCCceEECCCCcHHHHHHHHHHCCCCeeEEEEC----C---EEEEEEEHHHhhcC
Confidence            10  0  0123468888999999999999999999999999999983    5   89999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=99.46  E-value=2.1e-12  Score=102.45  Aligned_cols=112  Identities=19%  Similarity=0.297  Sum_probs=89.3

Q ss_pred             CeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHHHHHHHHHhh
Q 020637          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN  245 (323)
Q Consensus       166 ~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~~  245 (323)
                      +++++.+++++.+|++.|.+++.+.+||.|.  ++++|+||..|++..+.....  ..   .   ...   +.       
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~dl~~~~~~~~~--~~---~---~~~---v~-------   61 (113)
T cd04587           2 KPATVSPTTTVQEAAKLMREKRVSCVLVMDG--NKLVGIFTSKDIALRVVAQGL--DP---E---STL---VE-------   61 (113)
T ss_pred             CCeEeCCCCCHHHHHHHHHHcCCCeEEEEEC--CEEEEEEEhHHHHHHHHhcCC--Cc---C---cCC---HH-------
Confidence            5788999999999999999999999999984  899999999999743321100  00   0   000   11       


Q ss_pred             cccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637          246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (323)
Q Consensus       246 ~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~  312 (323)
                               ++|..++.++.+++++.+++.+|.+++.+++||+|+  + |   +++|+||..||+.+
T Consensus        62 ---------~i~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~--~-~---~~~Gvvs~~dl~~~  113 (113)
T cd04587          62 ---------RVMTPNPVCATSDTPVLEALHLMVQGKFRHLPVVDK--S-G---QVVGLLDVTKLTHA  113 (113)
T ss_pred             ---------HhcCCCCeEEcCCCCHHHHHHHHHHcCCCcccEECC--C-C---CEEEEEEHHHhccC
Confidence                     157788899999999999999999999999999985  2 4   79999999999864

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai

>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.46  E-value=1.3e-12  Score=105.11  Aligned_cols=121  Identities=20%  Similarity=0.304  Sum_probs=91.9

Q ss_pred             CeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHHHHHHHHHhh
Q 020637          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN  245 (323)
Q Consensus       166 ~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~~  245 (323)
                      +++++++++++.+|+++|.+.++..+||+|. .|+++|++|..|++..+......  ..  ...       +... .   
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~~G~v~~~~l~~~~~~~~~~--~~--~~~-------~~~~-~---   65 (122)
T cd04803           2 PVVTLSEDDSLADAEELMREHRIRHLPVVNE-DGKLVGLLTQRDLLRAALSSLSD--NG--EES-------LTKE-R---   65 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCcccccEECC-CCCEEEEEEHHHHHHHhcccccc--cc--ccc-------cccc-c---
Confidence            5678999999999999999999999999985 68999999999997644321110  00  000       0000 0   


Q ss_pred             cccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637          246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (323)
Q Consensus       246 ~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~  312 (323)
                          ...+.++|..+++++.+++++.+++.+|.+++.+++||+|+   .|   +++|+||..||+++
T Consensus        66 ----~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~---~~---~~~Gvit~~dl~~~  122 (122)
T cd04803          66 ----DVPVAEVMKTDVLTVTPDTPLREAAEIMVENKIGCLPVVDD---KG---TLVGIITRSDFLRL  122 (122)
T ss_pred             ----CcCHHHhhCCCCeEeCCCCcHHHHHHHHHHcCCCeEEEEcC---CC---CEEEEEEHHHhhcC
Confidence                00011257788999999999999999999999999999985   35   79999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.45  E-value=1.6e-12  Score=103.05  Aligned_cols=109  Identities=13%  Similarity=0.231  Sum_probs=88.9

Q ss_pred             CeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHHHHHHHHHhh
Q 020637          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN  245 (323)
Q Consensus       166 ~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~~  245 (323)
                      ++++++.++++.+|++.|.++++..+||+|+ .|+++|+++..|++.......    ..      .   ..+.       
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~-~~~~~G~v~~~dl~~~~~~~~----~~------~---~~v~-------   60 (111)
T cd04626           2 DFPTIDEDASIREALHEMLKYNTNEIIVKDN-EEKLKGVVTFTDILDLDLFES----FL------E---KKVF-------   60 (111)
T ss_pred             CceEECCCccHHHHHHHHHHhCCCeEEEEcC-CCCEEEEEehHHhHHHHhhcc----cc------c---CcHH-------
Confidence            5678999999999999999999999999985 689999999999865332100    00      0   0011       


Q ss_pred             cccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeecccccc
Q 020637          246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (323)
Q Consensus       246 ~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~  311 (323)
                               ++|.+++.++.+++++.+|+..|.+++++++||+|+    |   +++|+||..||+.
T Consensus        61 ---------~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~----~---~~~G~it~~di~~  110 (111)
T cd04626          61 ---------NIVSQDVFYVNEEDTIDEALDIMREKQIGRLPVVDD----N---KLIGVVRTKDILD  110 (111)
T ss_pred             ---------HHhcCCcEEEcCCCcHHHHHHHHHHcCCCeeeEeEC----C---EEEEEEEhHHhcc
Confidence                     147788999999999999999999999999999983    5   7999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.45  E-value=2.3e-12  Score=102.19  Aligned_cols=111  Identities=19%  Similarity=0.341  Sum_probs=87.2

Q ss_pred             CeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHHHHHHHHHhh
Q 020637          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN  245 (323)
Q Consensus       166 ~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~~  245 (323)
                      .+.++.++.++.+|.+.|.+++...++|.+  +++++|++|..|+++.+......   .     ...   .+.       
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~--~~~~~G~v~~~dl~~~~~~~~~~---~-----~~~---~v~-------   61 (112)
T cd04625           2 TIYTVAPETLLSEAVATMAEQDLGSLVVME--RGELVGLLTFREVLQAMAQHGAG---V-----LDT---TVR-------   61 (112)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCCeEEEee--CCEEEEEEEHHHHHHHHHhcCCc---h-----hcC---CHH-------
Confidence            467889999999999999999988777775  48999999999997654321000   0     000   011       


Q ss_pred             cccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637          246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (323)
Q Consensus       246 ~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~  312 (323)
                               ++|..++.++.+++++.+|+.+|.+++.+++||+|+    |   +++|+||.+||+++
T Consensus        62 ---------~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~~----~---~~~Gvvt~~dl~~~  112 (112)
T cd04625          62 ---------AIMNPEPIVASPDDSIDEVRRLMVERHLRYLPVLDG----G---TLLGVISFHDVAKA  112 (112)
T ss_pred             ---------HHhCCCCeEECCCCCHHHHHHHHHHcCCCeeeEEEC----C---EEEEEEEHHHhhcC
Confidence                     247777889999999999999999999999999983    4   89999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.45  E-value=2.9e-12  Score=103.24  Aligned_cols=121  Identities=15%  Similarity=0.333  Sum_probs=92.4

Q ss_pred             CeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHHHHHHHHHhh
Q 020637          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN  245 (323)
Q Consensus       166 ~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~~  245 (323)
                      +++++.++.++.+|.+.|.++++..+||+|+  |+++|++|..|+.+.+.......   . +..  .....+...     
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~~~~~~~~---~-~~~--~~~~~~~~~-----   68 (122)
T cd04637           2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVED--NELVGVISDRDYLKAISPFLGTA---G-ETE--KDLATLNRR-----   68 (122)
T ss_pred             CceEeCCCCCHHHHHHHHHhCCCCEEEEEeC--CeEEEEEEHHHHHHHHHHHhccc---c-chH--HHHHHHHhH-----
Confidence            5788999999999999999999999999994  89999999999977554221100   0 000  000001010     


Q ss_pred             cccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637          246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (323)
Q Consensus       246 ~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~  312 (323)
                             +.++|..+++++.+++++.+++..|.+++.+++||+|+   +|   +++|++|..|+++|
T Consensus        69 -------~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~---~~---~~~Gvit~~dll~~  122 (122)
T cd04637          69 -------AHQIMTRDPITVSPDTPVDEASKLLLENSISCLPVVDE---NG---QLIGIITWKDLLKY  122 (122)
T ss_pred             -------HHHhhcCCCeeeCCCCcHHHHHHHHHHcCCCeEeEECC---CC---CEEEEEEHHHhhhC
Confidence                   11257888999999999999999999999999999985   34   79999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.45  E-value=1.7e-12  Score=104.89  Aligned_cols=124  Identities=19%  Similarity=0.324  Sum_probs=92.2

Q ss_pred             CeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHHHHHHHHHhh
Q 020637          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN  245 (323)
Q Consensus       166 ~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~~  245 (323)
                      +++++.++.++.+|.++|.++++..+||+|+++++++|+|+..|++..+....... .   .....     ..+...   
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~~~~~~~G~v~~~dl~~~~~~~~~~~-~---~~~~~-----~~~~~~---   69 (125)
T cd04631           2 DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYLGGGEKFN-K---IKTGN-----GLEAIN---   69 (125)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCcccceeEeCCCCEEEEEEEHHHHHHHhhccchhc-c---ccccc-----cchhhh---
Confidence            56788999999999999999999999999963389999999999976553211000 0   00000     000000   


Q ss_pred             cccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637          246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (323)
Q Consensus       246 ~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~  312 (323)
                           ..+.++|..+++++.+++++.+++..|.+++.+++||+|+   +|   +++|+||..||+++
T Consensus        70 -----~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~---~~---~~~Gvit~~di~~~  125 (125)
T cd04631          70 -----EPVRSIMTRNVITITPDDSIKDAAELMLEKRVGGLPVVDD---DG---KLVGIVTERDLLKA  125 (125)
T ss_pred             -----cCHHHHhcCCceEeCCCCcHHHHHHHHHHcCCceEEEEcC---CC---cEEEEEEHHHhhcC
Confidence                 0011256788999999999999999999999999999984   24   79999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=99.45  E-value=1.5e-12  Score=103.06  Aligned_cols=114  Identities=24%  Similarity=0.334  Sum_probs=91.2

Q ss_pred             CCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHHHHHHHHHh
Q 020637          165 GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQL  244 (323)
Q Consensus       165 ~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~  244 (323)
                      ++++++.+++++.+|.++|.++++..+||+|+ .++++|+++..|+...+....         ..+..+   +       
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~G~v~~~~l~~~~~~~~---------~~~~~~---v-------   60 (114)
T cd04613           1 RDVVTIPEDTPLNELLDVIAHSPENNFPVVDD-DGRLVGIVSLDDIREILFDPS---------LYDLVV---A-------   60 (114)
T ss_pred             CCceeeCCCCcHHHHHHHHHhCCCcceeEECC-CCCEEEEEEHHHHHHHHhccc---------ccccEE---H-------
Confidence            45788999999999999999999999999995 589999999999965432110         000000   1       


Q ss_pred             hcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637          245 NLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (323)
Q Consensus       245 ~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~  312 (323)
                               .++|.+++.++.+++++.+++..|.+.+.+++||+|++  .+   +++|++|..||+++
T Consensus        61 ---------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~--~~---~~~Gvvt~~di~~~  114 (114)
T cd04613          61 ---------SDIMTKPPVVVYPEDSLEDALKKFEDSDYEQLPVVDDD--PG---KLLGILSRSDLLSA  114 (114)
T ss_pred             ---------HHhccCCCcEEcCCCCHHHHHHHHhhCCccEeeEEeCC--CC---EEEEEEEhHHhhcC
Confidence                     12578889999999999999999999999999999841  34   79999999999874

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a

>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.44  E-value=2.1e-12  Score=103.00  Aligned_cols=111  Identities=16%  Similarity=0.287  Sum_probs=86.7

Q ss_pred             CeEEEecchhHHHHHHHHHHCC-CCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHHHHHHHHHh
Q 020637          166 KVTALDVNLAVKQAFHVLYEQG-LPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQL  244 (323)
Q Consensus       166 ~vv~vd~~~~v~~A~~~l~~~~-i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~  244 (323)
                      ++++++.+.++.+|++.|.+++ ...+||.|  .++++|+|+..|++..+..-.    ...     .   ..+.      
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~~~G~v~~~dl~~~~~~~~----~~~-----~---~~i~------   61 (115)
T cd04620           2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVE--KGRLLGIFTERDIVRLTAIGK----DLS-----D---LPIG------   61 (115)
T ss_pred             CCeEeCCCCcHHHHHHHHHhcCCCceEEEcC--CCcEEEEEeHHHHHHHHhcCC----Ccc-----c---cCHH------
Confidence            4678899999999999999888 66777776  379999999999976443110    000     0   0011      


Q ss_pred             hcccccCCCCCCCCCCcEEeCCC--CCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637          245 NLKRQMDGNGRPCPRPLVQAGPY--DSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (323)
Q Consensus       245 ~~~~~~~~~~~im~~~~vtv~pd--~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~  312 (323)
                                ++|..+++++.++  +++.+|+.+|.+++.+++||+|+  + |   +++||||+.||+++
T Consensus        62 ----------~~~~~~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~--~-~---~~~Gvit~~dl~~~  115 (115)
T cd04620          62 ----------EVMTQPVVTLQESEIQDIFTALSLFRQHQIRHLPVLDD--Q-G---QLIGLVTAESIRQV  115 (115)
T ss_pred             ----------HhcCCCcEEEecccccCHHHHHHHHHHhCCceEEEEcC--C-C---CEEEEEEhHHhhcC
Confidence                      1477788899988  79999999999999999999985  3 5   79999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.44  E-value=6.3e-13  Score=132.47  Aligned_cols=118  Identities=17%  Similarity=0.194  Sum_probs=99.4

Q ss_pred             ccccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhh
Q 020637          152 LSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELET  231 (323)
Q Consensus       152 l~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~  231 (323)
                      ++..++.++|  ..+++++.+++++.+|+++|.++++.++||+|+ +++++|+||.+|+..    . . ..         
T Consensus        86 l~~VKv~~iM--i~~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~-~gklvGIVT~rDL~~----~-~-~~---------  147 (479)
T PRK07807         86 VAWVKSRDLV--FDTPVTLSPDDTVGDALALLPKRAHGAVVVVDE-EGRPVGVVTEADCAG----V-D-RF---------  147 (479)
T ss_pred             Hhhccccccc--ccCCeEECCCCCHHHHHHHHHhcCCceEEEECC-CCeEEEEEeHHHHhc----C-c-cC---------
Confidence            3456667888  578999999999999999999999999999995 789999999999721    1 0 00         


Q ss_pred             hhHHHHHHHHHHhhcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeecccccc
Q 020637          232 HTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (323)
Q Consensus       232 ~~i~~~~~~~~~~~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~  311 (323)
                         ..+.                ++|+++++++.++++|.+|+.+|.++++++|||+|+   +|   +++||||++||++
T Consensus       148 ---~~V~----------------diMt~~~itV~~d~sL~eAl~lM~~~~i~~LPVVD~---~g---~lvGIIT~~DIl~  202 (479)
T PRK07807        148 ---TQVR----------------DVMSTDLVTLPAGTDPREAFDLLEAARVKLAPVVDA---DG---RLVGVLTRTGALR  202 (479)
T ss_pred             ---CCHH----------------HhccCCceEECCCCcHHHHHHHHHhcCCCEEEEEcC---CC---eEEEEEEHHHHHH
Confidence               0011                258899999999999999999999999999999985   35   8999999999999


Q ss_pred             c
Q 020637          312 C  312 (323)
Q Consensus       312 ~  312 (323)
                      +
T Consensus       203 ~  203 (479)
T PRK07807        203 A  203 (479)
T ss_pred             H
Confidence            8

>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.44  E-value=1.7e-12  Score=104.34  Aligned_cols=120  Identities=20%  Similarity=0.380  Sum_probs=91.3

Q ss_pred             CeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHHHHHHHHHhh
Q 020637          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN  245 (323)
Q Consensus       166 ~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~~  245 (323)
                      +++++++++++.+|++.|.++++..+||+|+  ++++|++|..|++..+......  ..     .......+.+      
T Consensus         2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~--~~~~G~v~~~~l~~~~~~~~~~--~~-----~~~~~~~~~~------   66 (121)
T cd04633           2 PVITVSPDDRVSHARRLMLDHDISRLPVIEG--GKLVGIVTEKDIADALRSFRPL--VR-----DRHQERRIRN------   66 (121)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeeEEEEC--CEEEEEEchHHHHHhhhhhhhc--cc-----chhhhhhhhc------
Confidence            4678899999999999999999999999994  8999999999997654321110  00     0000000000      


Q ss_pred             cccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637          246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (323)
Q Consensus       246 ~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~  312 (323)
                           ..+..+|..+++++.++++|.+|+.+|.+++++++||+|+    |   +++|+||.+||+++
T Consensus        67 -----~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~----~---~~~Gvi~~~dl~~~  121 (121)
T cd04633          67 -----LPVSDIMTRPVITIEPDTSVSDVASLMLENNIGGLPVVDD----G---KLVGIVTRTDILRY  121 (121)
T ss_pred             -----cCHHHHccCCceEECCCCcHHHHHHHHHHcCCCcccEEEC----C---EEEEEEEHHHhhcC
Confidence                 0112257888999999999999999999999999999983    5   89999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

Probab=99.44  E-value=3.4e-12  Score=100.96  Aligned_cols=108  Identities=22%  Similarity=0.378  Sum_probs=89.0

Q ss_pred             CCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHHHHHHHHHh
Q 020637          165 GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQL  244 (323)
Q Consensus       165 ~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~  244 (323)
                      +++++++.+.++.+|.+.|.+++...+||+|.  ++++|+|+..|+...+.... .  .        .   .+.      
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~dl~~~~~~~~-~--~--------~---~~~------   59 (110)
T cd04595           2 SPVKTVRPEATIEEARELLLRYGHTALPVVEG--GRVVGIISRRDVEKALRHGL-G--H--------A---PVK------   59 (110)
T ss_pred             CCceEeCCCCcHHHHHHHHHHcCCCeeeEeeC--CEEEEEEEHHHHHHHHhccc-c--c--------C---cHH------
Confidence            46789999999999999999999999999994  89999999999865332100 0  0        0   011      


Q ss_pred             hcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeecccccc
Q 020637          245 NLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (323)
Q Consensus       245 ~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~  311 (323)
                                ++|..+++++.+++++.+|+.+|.+++.+.+||+|+    |   +++|+||..||++
T Consensus        60 ----------~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~----~---~~~Gvvt~~di~~  109 (110)
T cd04595          60 ----------DYMSTDVVTVPPDTPLSEVQELMVEHDIGRVPVVED----G---RLVGIVTRTDLLR  109 (110)
T ss_pred             ----------HHhcCCCEEECCCCcHHHHHHHHHHcCCCeeEEEeC----C---EEEEEEEhHHhhc
Confidence                      147778999999999999999999999999999983    4   7999999999986

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional

Probab=99.44  E-value=7.2e-13  Score=135.50  Aligned_cols=130  Identities=17%  Similarity=0.190  Sum_probs=105.2

Q ss_pred             hhhhccccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChh
Q 020637          148 ISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEE  227 (323)
Q Consensus       148 ~~~~l~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~  227 (323)
                      -++.++..++.|+|  .++.+++++++++.+|.+.|.+++.+.+||+|+ +++++|+||..|+.+.+.....    .  .
T Consensus       440 ~~~~L~~~~V~dim--~~~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~-~g~lvGiVt~~dL~~~l~~~~~----~--~  510 (574)
T PRK01862        440 ERERLRTTQMRELI--QPAQTVVPPTASVADMTRVFLEYPVKYLYVVDD-DGRFRGAVALKDITSDLLDKRD----T--T  510 (574)
T ss_pred             hhhHHhhCcHHHHh--cCCCceeCCCCCHHHHHHHHHhCCCceEEEEcC-CCeEEEEEEHHHHHHHhhcccc----c--c
Confidence            34567788999999  567889999999999999999999999999995 7899999999999764431100    0  0


Q ss_pred             hhhhhhHHHHHHHHHHhhcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeecc
Q 020637          228 ELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLS  307 (323)
Q Consensus       228 ~l~~~~i~~~~~~~~~~~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~  307 (323)
                      +      ...                .++|.+++.++.+++++.+|+++|.+++++++||+|++ +++   +++|+||++
T Consensus       511 ~------~~v----------------~dim~~~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~-~~~---~liGvIt~~  564 (574)
T PRK01862        511 D------KTA----------------ADYAHTPFPLLTPDMPLGDALEHFMAFQGERLPVVESE-ASP---TLAGVVYKT  564 (574)
T ss_pred             c------chH----------------HHhccCCCeeECCCCCHHHHHHHHHhcCCCeeeeEeCC-CCC---eEEEEEEHH
Confidence            0      001                12588889999999999999999999999999999862 223   799999999


Q ss_pred             ccccc
Q 020637          308 DILKC  312 (323)
Q Consensus       308 dIl~~  312 (323)
                      ||+++
T Consensus       565 DIl~~  569 (574)
T PRK01862        565 SLLDA  569 (574)
T ss_pred             HHHHH
Confidence            99987

>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=99.43  E-value=3.6e-12  Score=100.88  Aligned_cols=110  Identities=18%  Similarity=0.335  Sum_probs=89.0

Q ss_pred             CCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHHHHHHHHHh
Q 020637          165 GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQL  244 (323)
Q Consensus       165 ~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~  244 (323)
                      +++++++.+.++.+|.+.|.+++++.+||.|+  ++++|+++..|++..+...  .   .. ..   .   .+.      
T Consensus         1 ~~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~--~~~~G~v~~~~l~~~~~~~--~---~~-~~---~---~i~------   60 (111)
T cd04800           1 RPPVTCSPDTTIREAARLMTEHRVSSLLVVDD--GRLVGIVTDRDLRNRVVAE--G---LD-PD---T---PVS------   60 (111)
T ss_pred             CCCEEECCCCcHHHHHHHHHHcCCCeEEEEEC--CEEEEEEEhHHHHHHHhcc--C---CC-cc---C---CHH------
Confidence            36788999999999999999999999999995  8999999999986533211  0   00 00   0   011      


Q ss_pred             hcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeecccccc
Q 020637          245 NLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (323)
Q Consensus       245 ~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~  311 (323)
                                ++|..+++++.++++|.+|+.+|.+++.+++||+|+    |   +++|+||.+||++
T Consensus        61 ----------~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~----~---~~~Giit~~di~~  110 (111)
T cd04800          61 ----------EVMTAPPITIPPDATVFEALLLMLERGIHHLPVVDD----G---RLVGVISATDLLR  110 (111)
T ss_pred             ----------HHhCCCCeEECCCCcHHHHHHHHHHcCCCeeeEeEC----C---EEEEEEEHHHhhc
Confidence                      146778899999999999999999999999999983    4   7999999999986

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa

>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=99.43  E-value=1.4e-12  Score=103.04  Aligned_cols=106  Identities=20%  Similarity=0.298  Sum_probs=88.4

Q ss_pred             CeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHHHHHHHHHhh
Q 020637          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN  245 (323)
Q Consensus       166 ~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~~  245 (323)
                      ++++++++.++.+|++.|.+++...+||+|+ .++++|+++..|++..    ...      .        .+.+      
T Consensus         3 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~-~~~~~G~v~~~~l~~~----~~~------~--------~v~~------   57 (108)
T cd04596           3 DTGYLTTTDTVKDWHELNKETGHSRFPVVDE-KNKVVGIVTSKDVAGK----DPD------T--------TIEK------   57 (108)
T ss_pred             ccEEeCCCCCHHHHHHHHHHcCCCceeEECC-CCeEEEEecHHHHhcc----ccc------c--------cHHH------
Confidence            5678999999999999999999999999995 7899999999998521    000      0        0111      


Q ss_pred             cccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637          246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (323)
Q Consensus       246 ~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~  312 (323)
                                +|..++.++.+++++.+|+.+|.+++.+.+||+|+   +|   +++|+||..||+++
T Consensus        58 ----------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~---~~---~~~G~it~~di~~~  108 (108)
T cd04596          58 ----------VMTKNPITVNPKTSVASVAHMMIWEGIEMLPVVDD---NK---KLLGIISRQDVLKA  108 (108)
T ss_pred             ----------HhcCCCeEECCCCCHHHHHHHHHHcCCCeeeEEcC---CC---CEEEEEEHHHhhcC
Confidence                      46777899999999999999999999999999985   35   79999999999864

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=99.43  E-value=4.1e-12  Score=100.34  Aligned_cols=108  Identities=17%  Similarity=0.272  Sum_probs=89.0

Q ss_pred             CeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHHHHHHHHHhh
Q 020637          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN  245 (323)
Q Consensus       166 ~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~~  245 (323)
                      +++++++++++.+|.+.|.++++..+||+|.  ++++|+++..|+++.......    .          ..+.+      
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~~l~~~~~~~~~----~----------~~v~~------   59 (110)
T cd04588           2 PLITLNPNATLREAARLFNTHHIHGAPVVDD--GKLVGIVTLSDIAHAIARGLE----L----------AKVKD------   59 (110)
T ss_pred             CcEEECCCCCHHHHHHHHHHcCCCEEEEeeC--CEEEEEEEHHHHHHHHhcccc----c----------cCHHH------
Confidence            5788999999999999999999999999994  799999999999764321100    0          01111      


Q ss_pred             cccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeecccccc
Q 020637          246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (323)
Q Consensus       246 ~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~  311 (323)
                                +|..++.++.+++++.+++..|.+++++.+||+|+   .|   +++|+||..||++
T Consensus        60 ----------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~---~~---~~~G~i~~~dl~~  109 (110)
T cd04588          60 ----------VMTKDVITIDEDEQLYDAIRLMNKHNVGRLIVTDD---EG---RPVGIITRTDILR  109 (110)
T ss_pred             ----------HhcCCceEECCCCCHHHHHHHHHhcCCCEEEEECC---CC---CEEEEEEhHHhhc
Confidence                      46778899999999999999999999999999985   24   7999999999986

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.

>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.43  E-value=4.8e-12  Score=100.27  Aligned_cols=111  Identities=18%  Similarity=0.317  Sum_probs=88.9

Q ss_pred             CCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHHHHHHHHHh
Q 020637          165 GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQL  244 (323)
Q Consensus       165 ~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~  244 (323)
                      ++++++.+++++.+|++.|.+++.+.+||+|+  ++++|+++..|++..+..-......           ..+.      
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~~~~~~~~~-----------~~~~------   61 (112)
T cd04802           1 KNVITVDPDTTVYEAANIMTENNIGRLIVVDN--EKPVGIITERDLVKKVVSRNLKPRE-----------VPVG------   61 (112)
T ss_pred             CCcEEECCCCCHHHHHHHHHHCCCCEEEEEEC--CEEEEEEEHHHHHHHHhhccCCccc-----------CCHH------
Confidence            46788999999999999999999999999995  3999999999997644311000000           0011      


Q ss_pred             hcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeecccccc
Q 020637          245 NLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (323)
Q Consensus       245 ~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~  311 (323)
                                ++|..++.++.+++++.+++++|.+++.+++||+|+    +   +++|+||.+||++
T Consensus        62 ----------~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~----~---~~~Gvi~~~di~~  111 (112)
T cd04802          62 ----------EVMSTPLITIDPNASLNEAAKLMAKHGIKRLPVVDD----D---ELVGIVTTTDIVM  111 (112)
T ss_pred             ----------HhcCCCcEEECCCCCHHHHHHHHHHcCCCeeEEeeC----C---EEEEEEEhhhhhc
Confidence                      147778899999999999999999999999999984    3   6999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria

Probab=99.43  E-value=2.9e-12  Score=101.59  Aligned_cols=101  Identities=18%  Similarity=0.235  Sum_probs=87.7

Q ss_pred             CeEEEecchhHHHHHHHHHHCCCCeeeeEeCC--CCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHHHHHHHHH
Q 020637          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDF--KGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQ  243 (323)
Q Consensus       166 ~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~--~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~  243 (323)
                      .+..+++++++.+|.+.|.++++..+||+|+.  +++++|+|+..|+.....                       .    
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~~~~~-----------------------~----   55 (105)
T cd04591           3 LVVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLVVALK-----------------------N----   55 (105)
T ss_pred             ceEEecccccHHHHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHHHHHH-----------------------H----
Confidence            57788999999999999999999999999953  589999999999853221                       0    


Q ss_pred             hhcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637          244 LNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (323)
Q Consensus       244 ~~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~  312 (323)
                                  +|.+++.++.+++++.+++.+|.+++++++||+++    |   +++|+||..||+++
T Consensus        56 ------------~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVv~~----~---~~~Gvvt~~dl~~~  105 (105)
T cd04591          56 ------------YIDPSPFTVSPRTSLEKVHQLFRKLGLRHLLVVDE----G---RLVGIITRKDLLKA  105 (105)
T ss_pred             ------------hccCCCceECCCCcHHHHHHHHHHcCCCEEEEEEC----C---eEEEEEEhhhhhcC
Confidence                        26778889999999999999999999999999963    4   79999999999875

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS

>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.43  E-value=3.9e-12  Score=101.00  Aligned_cols=111  Identities=23%  Similarity=0.404  Sum_probs=89.3

Q ss_pred             CeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHHHHHHHHHhh
Q 020637          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN  245 (323)
Q Consensus       166 ~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~~  245 (323)
                      +..++.+++++.+|++.|.++++..+||+|+ .++++|++|..|++..+....         .+....   +        
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~-~~~~~G~v~~~dl~~~~~~~~---------~~~~~~---i--------   60 (113)
T cd04615           2 KPSCVVLNTDIARAVAEMYTSGSRALPVVDD-KKRLVGIITRYDVLSYALESE---------ELKDAK---V--------   60 (113)
T ss_pred             CCEEeeCCCcHHHHHHHHHHcCCceEeEEcC-CCCEEEEEEHHHHHHhhhhhh---------hhcCCc---H--------
Confidence            3578899999999999999999999999995 689999999999965332110         000000   1        


Q ss_pred             cccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeecccccc
Q 020637          246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (323)
Q Consensus       246 ~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~  311 (323)
                              .++|..++.++.+++++.+++..|.+++.+++||+|+   +|   +++|+||..||++
T Consensus        61 --------~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~---~g---~~~Gvvt~~dl~~  112 (113)
T cd04615          61 --------REVMNSPVITIDANDSIAKARWLMSNNNISRLPVLDD---KG---KVGGIVTEDDILR  112 (113)
T ss_pred             --------HHhccCCceEECCCCcHHHHHHHHHHcCCCeeeEECC---CC---eEEEEEEHHHhhc
Confidence                    1157788999999999999999999999999999985   35   7999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.42  E-value=1.8e-12  Score=105.68  Aligned_cols=116  Identities=15%  Similarity=0.194  Sum_probs=85.2

Q ss_pred             CeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHH--HhhcCCCCCCChhhhhhhhHHHHHHHHHH
Q 020637          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILIL--RELGTNGSNLTEEELETHTISAWKVGKLQ  243 (323)
Q Consensus       166 ~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l--~~~~~~~~~l~~~~l~~~~i~~~~~~~~~  243 (323)
                      +++++..++++.+|++.|.++++..+||+|+ .++++|+++..|+...+  +........             +.+.   
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~-~~~~~Giv~~~dl~~~~~~~~~~~~~~~-------------~~~~---   64 (126)
T cd04640           2 KPIVIPADTSIDEALELMIKHGVRLLLVVDS-DDNFIGVITAVDLLGEEPIKRIQEGGIS-------------RSEL---   64 (126)
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCcEEEEEcC-CCcEEEEEEHHHHhhChhhHHHHHcCCC-------------chhe---
Confidence            4678899999999999999999999999995 68999999999987521  111000000             0000   


Q ss_pred             hhcccccCCCCCCCCCCcEEe------CCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeecccccc
Q 020637          244 LNLKRQMDGNGRPCPRPLVQA------GPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (323)
Q Consensus       244 ~~~~~~~~~~~~im~~~~vtv------~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~  311 (323)
                              .+.++|.+++..+      .+++++.+|+++|.+++++++||+|+  ++|   +++|+||.+||++
T Consensus        65 --------~v~~im~~~~~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~--~~~---~~~G~it~~di~~  125 (126)
T cd04640          65 --------TVADVMTPKEDLKALDLEELENASVGDVVETLKASGRQHALVVDR--EHH---QIRGIISTSDIAR  125 (126)
T ss_pred             --------EHHHhcCchhhhccccHHHhccCcHHHHHHHHHHCCCceEEEEEC--CCC---EEEEEEeHHHHhh
Confidence                    0112466554333      37899999999999999999999985  224   7999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.42  E-value=2e-12  Score=129.61  Aligned_cols=132  Identities=20%  Similarity=0.278  Sum_probs=100.2

Q ss_pred             CCHHHHHHHHHhhhhhccccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCC--CCeEEEEEehHHHHHH
Q 020637          136 YSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDF--KGRFVGVLSALDFILI  213 (323)
Q Consensus       136 ~s~~~l~~~~~~~~~~l~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~--~~~~vGilT~~D~i~~  213 (323)
                      .+.+++......+.+++..    .++    ...++.+++++.+|+++|.++++..+||+|+.  +++++||||..|+...
T Consensus        84 ~sie~qa~lV~kVk~~~~g----~i~----~~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~~  155 (502)
T PRK07107         84 QSIESEAAMVRRVKNYKAG----FVV----SDSNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRIS  155 (502)
T ss_pred             CCHHHHHHHHHHHHHHhcC----CcC----CCCEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhhcc
Confidence            4455555555566665532    111    22588999999999999999999999999952  5899999999998421


Q ss_pred             HHhhcCCCCCCChhhhhhhhHHHHHHHHHHhhcccccCCCCCCCCC--CcEEeCCCCCHHHHHHHHHHcCCCEEeEEecC
Q 020637          214 LRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPR--PLVQAGPYDSLKEVALKILQNKVATVPIIHST  291 (323)
Q Consensus       214 l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~im~~--~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~  291 (323)
                          ..   ..     + .   .+.                ++|++  +++++.+++++.+|+.+|.++++++|||+|+ 
T Consensus       156 ----~~---~~-----~-~---~V~----------------dIMt~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~-  202 (502)
T PRK07107        156 ----RM---SL-----D-T---KVK----------------DFMTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVDK-  202 (502)
T ss_pred             ----cc---CC-----C-C---CHH----------------HHhCCCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEcC-
Confidence                00   00     0 0   011                25775  8899999999999999999999999999985 


Q ss_pred             CCCCCcccEEEEeecccccccc
Q 020637          292 GPAGSCQEILYLASLSDILKCK  313 (323)
Q Consensus       292 ~~~g~~~~lvGIIT~~dIl~~~  313 (323)
                        ++   +|+||||.+||++..
T Consensus       203 --~g---~LvGIIT~~Dilk~~  219 (502)
T PRK07107        203 --NG---NLVYLVFRKDYDSHK  219 (502)
T ss_pred             --CC---eEEEEEEhHHHHhcc
Confidence              34   799999999999983

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=99.42  E-value=6.9e-12  Score=124.64  Aligned_cols=115  Identities=15%  Similarity=0.300  Sum_probs=94.9

Q ss_pred             cccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCC--CeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhH
Q 020637          157 VYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFK--GRFVGVLSALDFILILRELGTNGSNLTEEELETHTI  234 (323)
Q Consensus       157 ~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~--~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i  234 (323)
                      ..++|  .+++++++++.++.+|+++|.+++++.+||+|++.  ++++|+||.+|++...    . . ..          
T Consensus        82 ~~~~~--~~~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~~lvGIVt~rDL~~~~----~-~-~~----------  143 (450)
T TIGR01302        82 AENGI--ISDPVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIRFVK----D-K-GK----------  143 (450)
T ss_pred             ccCce--ecCceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEHHHHhhhh----c-C-CC----------
Confidence            44556  46899999999999999999999999999999632  7999999999985311    0 0 00          


Q ss_pred             HHHHHHHHHhhcccccCCCCCCCC-CCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637          235 SAWKVGKLQLNLKRQMDGNGRPCP-RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (323)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~im~-~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~  312 (323)
                       .+.+                +|+ .+++++.++++|.+|+.+|.+++++.+||+|+   .|   +++|+||..||++.
T Consensus       144 -~V~d----------------vm~~~~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe---~G---~lvGiVT~~DIl~~  199 (450)
T TIGR01302       144 -PVSE----------------VMTREEVITVPEGIDLEEALKVLHEHRIEKLPVVDK---NG---ELVGLITMKDIVKR  199 (450)
T ss_pred             -CHHH----------------hhCCCCCEEECCCCcHHHHHHHHHHcCCCeEEEEcC---CC---cEEEEEEhHHhhhc
Confidence             0111                477 58999999999999999999999999999995   35   79999999999988

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=99.42  E-value=4.5e-12  Score=99.67  Aligned_cols=106  Identities=13%  Similarity=0.264  Sum_probs=88.2

Q ss_pred             CeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHHHHHHHHHhh
Q 020637          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN  245 (323)
Q Consensus       166 ~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~~  245 (323)
                      ++++++++.++.+|++.|.++++..+||+|+ .++++|+|+..|++....   . ..             .+.       
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~-~~~~~G~v~~~dl~~~~~---~-~~-------------~v~-------   57 (109)
T cd04583           3 NPVTITPDRTLAEAIKLMRDKKVDSLLVVDK-DNKLLGIVSLESLEQAYK---E-AK-------------SLE-------   57 (109)
T ss_pred             CCEEECCCCCHHHHHHHHHHCCCceEEEEcC-CCcEEEEEEHHHHHHHhh---c-CC-------------cHh-------
Confidence            5678899999999999999999999999985 689999999999864321   0 00             011       


Q ss_pred             cccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeecccccc
Q 020637          246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (323)
Q Consensus       246 ~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~  311 (323)
                               ++|...+.++.+++++.+|+..|.+++.+++||+|+   +|   +++|+||.+|+++
T Consensus        58 ---------~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~vv~~---~g---~~~Gvit~~~l~~  108 (109)
T cd04583          58 ---------DIMLEDVFTVQPDASLRDVLGLVLKRGPKYVPVVDE---DG---KLVGLITRSSLVD  108 (109)
T ss_pred             ---------HhhcCCceEECCCCcHHHHHHHHHHcCCceeeEECC---CC---eEEEEEehHHhhc
Confidence                     146778899999999999999999999999999985   35   7999999999986

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz

>PRK15094 magnesium/cobalt efflux protein CorC; Provisional

Probab=99.42  E-value=1.7e-12  Score=121.98  Aligned_cols=124  Identities=15%  Similarity=0.262  Sum_probs=101.1

Q ss_pred             ccccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhh
Q 020637          152 LSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELET  231 (323)
Q Consensus       152 l~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~  231 (323)
                      |...++.|+|..-.++++++.++++.++++.+.+++.+.+||++++.++++|+|+..|++..+..   .....       
T Consensus        64 l~~~~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll~~~~~---~~~~~-------  133 (292)
T PRK15094         64 IADQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRS---DAEAF-------  133 (292)
T ss_pred             cCCCEEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCCCcEEEEEEHHHHHhHhhc---cCCcC-------
Confidence            57889999995434799999999999999999999999999998644799999999999754321   00000       


Q ss_pred             hhHHHHHHHHHHhhcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeecccccc
Q 020637          232 HTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (323)
Q Consensus       232 ~~i~~~~~~~~~~~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~  311 (323)
                          .+.+                +|+. ++++.++++|.+|+..|.+++.|.+||+|+  . |   .++||||..||++
T Consensus       134 ----~l~~----------------l~r~-~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe--~-G---~viGiVTleDIle  186 (292)
T PRK15094        134 ----SMDK----------------VLRQ-AVVVPESKRVDRMLKEFRSQRYHMAIVIDE--F-G---GVSGLVTIEDILE  186 (292)
T ss_pred             ----CHHH----------------HcCC-CcCcCCCCcHHHHHHHHHhcCCEEEEEEeC--C-C---CEEEEeEHHHHHH
Confidence                0111                4655 458999999999999999999999999995  3 4   6999999999999


Q ss_pred             c
Q 020637          312 C  312 (323)
Q Consensus       312 ~  312 (323)
                      .
T Consensus       187 ~  187 (292)
T PRK15094        187 L  187 (292)
T ss_pred             H
Confidence            8

>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.41  E-value=3.2e-12  Score=102.86  Aligned_cols=121  Identities=15%  Similarity=0.323  Sum_probs=91.2

Q ss_pred             CeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHHHHHHHHHhh
Q 020637          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN  245 (323)
Q Consensus       166 ~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~~  245 (323)
                      +++++.+++++.+|++.|.++++..+||+|. .++++|+++..|+++...   ... ..  ++....  .....      
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~~G~v~~~~l~~~~~---~~~-~~--~~~~~~--~~~~~------   66 (122)
T cd04635           2 EPVTCTPDDPVSKVWDLMLESGFTGLPVVQK-AGELIGIITRRDIIRAGS---VRT-SV--EDQQRT--QTKAS------   66 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCCCcccEECC-CCcEEEEEEcHHHHhhcc---ccc-cc--cchhhh--hhhcc------
Confidence            5788999999999999999999999999985 789999999999965321   000 00  000000  00000      


Q ss_pred             cccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637          246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (323)
Q Consensus       246 ~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~  312 (323)
                           ..+.++|.++++++.+++++.+++..|.+++.+++||+|+  + |   +++|+||..||+++
T Consensus        67 -----~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~--~-g---~~~Gvit~~dl~~~  122 (122)
T cd04635          67 -----PTVEKIMSTPVYSVTPDDSIATAVELMLEHDIGRLPVVNE--K-D---QLVGIVDRHDVLKA  122 (122)
T ss_pred             -----CcHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCeeeEEcC--C-C---cEEEEEEhHHhhcC
Confidence                 0011257888999999999999999999999999999985  3 5   89999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.41  E-value=6.6e-12  Score=99.51  Aligned_cols=113  Identities=18%  Similarity=0.357  Sum_probs=89.2

Q ss_pred             CCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHHHHHHHHHh
Q 020637          165 GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQL  244 (323)
Q Consensus       165 ~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~  244 (323)
                      ++++++++++++.+|++.|.+++...+||+|+  ++++|+++..|++..+..  ... ..     ...   .+.      
T Consensus         1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~G~i~~~~l~~~~~~--~~~-~~-----~~~---~~~------   61 (113)
T cd04622           1 RDVVTVSPDDTIREAARLMREHDVGALPVCEN--DRLVGIVTDRDIVVRAVA--EGR-DP-----DTT---TVG------   61 (113)
T ss_pred             CCCEEECCCCcHHHHHHHHHHcCCCEEEEeeC--CEEEEEEEhHHHHHHHhh--ccC-Cc-----ccC---CHH------
Confidence            35788999999999999999999999999984  899999999998622111  000 00     000   011      


Q ss_pred             hcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637          245 NLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (323)
Q Consensus       245 ~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~  312 (323)
                                ++|...+.++.+++++.+++..|.+++.+++||+|+   +|   +++|+||..|++++
T Consensus        62 ----------~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~---~~---~~~G~it~~di~~~  113 (113)
T cd04622          62 ----------DVMTRGVVTVTEDDDVDEAARLMREHQVRRLPVVDD---DG---RLVGIVSLGDLARA  113 (113)
T ss_pred             ----------HhccCCccEECCCCCHHHHHHHHHHcCCCeeeEECC---CC---cEEEEEEHHHhhcC
Confidence                      147778899999999999999999999999999985   24   79999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.41  E-value=5.5e-12  Score=99.94  Aligned_cols=110  Identities=19%  Similarity=0.324  Sum_probs=89.8

Q ss_pred             CeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHHHHHHHHHhh
Q 020637          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN  245 (323)
Q Consensus       166 ~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~~  245 (323)
                      ++.++..+.++.+|.+.|.++++..+||.|+ +++++|+||..|++..+.....    .     .    ..+.       
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~-~~~~~G~v~~~~l~~~~~~~~~----~-----~----~~v~-------   60 (112)
T cd04624           2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDP-DERPIGIVTERDIVRAVAAGID----L-----D----TPVS-------   60 (112)
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCCEEEEECC-CCCEEEEeeHHHHHHHHhccCC----C-----c----cCHH-------
Confidence            4678899999999999999999999999995 6899999999999764432110    0     0    0011       


Q ss_pred             cccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeecccccc
Q 020637          246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (323)
Q Consensus       246 ~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~  311 (323)
                               ++|..++.++.+++++.+++.+|.+++++.+||+|+  + |   +++|+||.+||++
T Consensus        61 ---------~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~--~-g---~~~Gilt~~dl~~  111 (112)
T cd04624          61 ---------EIMTRDLVTVDPDEPVAEAAKLMRKNNIRHHLVVDK--G-G---ELVGVISIRDLVR  111 (112)
T ss_pred             ---------HhccCCCEEECCCCcHHHHHHHHHHcCccEEEEEcC--C-C---cEEEEEEHHHhcc
Confidence                     146778999999999999999999999999999985  3 5   7999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=99.40  E-value=4.9e-12  Score=101.18  Aligned_cols=121  Identities=20%  Similarity=0.325  Sum_probs=91.5

Q ss_pred             CeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHHHHHHHHHhh
Q 020637          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN  245 (323)
Q Consensus       166 ~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~~  245 (323)
                      ++++++.+.++.+|++.|.++++..+||+|.  ++++|+++..|+...+.....   .....+..     ....   .  
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~--~~~~G~i~~~~l~~~~~~~~~---~~~~~~~~-----~~~~---~--   66 (122)
T cd04585           2 NPITVTPDTSLMEALKLMKENSIRRLPVVDR--GKLVGIVTDRDLKLASPSKAT---TLDIWELY-----YLLS---K--   66 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHhCCcceeeEecC--CeEEEEEeHHHHHHhhhcccc---cccchhhh-----hhhc---c--
Confidence            5678999999999999999999999999994  899999999999764431110   00000000     0000   0  


Q ss_pred             cccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637          246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (323)
Q Consensus       246 ~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~  312 (323)
                           ..+.++|.++++++.+++++.+++..|.+++.+++||+|+  + |   +++|+||..||+++
T Consensus        67 -----~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~--~-~---~~~Gvvt~~di~~~  122 (122)
T cd04585          67 -----IKVSDIMTRDPITVSPDASVEEAAELMLERKISGLPVVDD--Q-G---RLVGIITESDLFRA  122 (122)
T ss_pred             -----cCHHHhccCCCeEeCCCCcHHHHHHHHHHcCCCceeEECC--C-C---cEEEEEEHHHhhhC
Confidence                 0012367888999999999999999999999999999985  3 5   79999999999874

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i

>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=99.40  E-value=6.3e-12  Score=99.17  Aligned_cols=110  Identities=23%  Similarity=0.428  Sum_probs=89.5

Q ss_pred             CeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHHHHHHHHHhh
Q 020637          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN  245 (323)
Q Consensus       166 ~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~~  245 (323)
                      +.+++++++++.+|++.|.+.+++.+||+|.  ++++|+++..|+.......    . .  ..   .   ..        
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~~~----~-~--~~---~---~~--------   58 (111)
T cd04612           2 DVVTVPVDLTVDEVLALMFGERHRGYPVVDD--GRLVGIVTLADIRRVPAEG----R-E--AT---V---LV--------   58 (111)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCCCcceEeeC--CeEEEEEEHHHHHHHHhcC----c-c--cc---c---CH--------
Confidence            5678999999999999999999999999994  8999999999986533210    0 0  00   0   00        


Q ss_pred             cccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637          246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (323)
Q Consensus       246 ~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~  312 (323)
                              .+.|..++.++.+++++.+++..|.+++.+++||+|+  + |   +++|+||..||+++
T Consensus        59 --------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~--~-~---~~~G~it~~di~~~  111 (111)
T cd04612          59 --------GDVMTRDPVTASPDETLRDALKRMAERDIGRLPVVDD--S-G---RLVGIVSRSDLLRA  111 (111)
T ss_pred             --------HHhccCCCeEECCCCCHHHHHHHHHhCCCCeeeEEcC--C-C---CEEEEEEHHHhhhC
Confidence                    1147888999999999999999999999999999985  2 4   79999999999875

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an

>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea

Probab=99.39  E-value=4e-12  Score=100.01  Aligned_cols=101  Identities=18%  Similarity=0.207  Sum_probs=84.8

Q ss_pred             EEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHHHHHHHHHhhcc
Q 020637          168 TALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLK  247 (323)
Q Consensus       168 v~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~~~~  247 (323)
                      +++.++.++.+|++.|.++++..+||+| + ++++|+++..|+++..    .  .             .+.+        
T Consensus         4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d-~-~~~~G~v~~~~l~~~~----~--~-------------~~~~--------   54 (104)
T cd04594           4 IKVKDYDKVYEAKRIMIENDLLSLPVVD-Y-NKFLGAVYLKDIENAT----Y--G-------------DVVD--------   54 (104)
T ss_pred             eEECCCCCHHHHHHHHHHcCCcEEEEEE-C-CEEEEEEEHHHHhhhc----c--c-------------chhh--------
Confidence            6788999999999999999999999999 4 8999999999985310    0  0             0111        


Q ss_pred             cccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637          248 RQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (323)
Q Consensus       248 ~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~  312 (323)
                              +|...+.++.+++++.+|+..|.+++.+++||+|+    |   +++|+||+.||+++
T Consensus        55 --------~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~----~---~~iGvit~~dl~~~  104 (104)
T cd04594          55 --------YIVRGIPYVRLTSTAEEAWEVMMKNKTRWCPVVDD----G---KFKGIVTLDSILDA  104 (104)
T ss_pred             --------hhhcCCcEEcCCCCHHHHHHHHHHcCcceEEEEEC----C---EEEEEEEHHHhhcC
Confidence                    36677889999999999999999999999999973    4   79999999999864

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do

>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

Probab=99.39  E-value=5.4e-12  Score=100.01  Aligned_cols=112  Identities=20%  Similarity=0.292  Sum_probs=89.5

Q ss_pred             CeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHHHHHHHHHhh
Q 020637          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN  245 (323)
Q Consensus       166 ~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~~  245 (323)
                      ++.++.++.++.+|.+.|.+.+.+.+||+|+ .++++|+|+..|+.+.+.....    .     ....   +        
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~-~~~~~G~v~~~~i~~~~~~~~~----~-----~~~~---v--------   61 (114)
T cd04604           3 ALPLVSPDTSLKDALLEMSRKGLGMTAVVDE-DGRLVGIFTDGDLRRALEKGLD----I-----LTLP---V--------   61 (114)
T ss_pred             cccccCCCCcHHHHHHHHHhcCccEEEEEcC-CCCEEEEechHHHHHHHhccCc----c-----ccCC---H--------
Confidence            3566788999999999999999999999995 6899999999998765542110    0     0000   1        


Q ss_pred             cccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637          246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (323)
Q Consensus       246 ~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~  312 (323)
                              +++|..++.++.+++++.+++++|.+++.+++||+|+  + |   +++|+||..||+++
T Consensus        62 --------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~--~-~---~~iG~it~~di~~~  114 (114)
T cd04604          62 --------ADVMTRNPKTIDPDALAAEALELMEENKITALPVVDD--N-G---RPVGVLHIHDLLRA  114 (114)
T ss_pred             --------HHhhccCCeEECCCCcHHHHHHHHHHcCCCEEEEECC--C-C---CEEEEEEHHHhhcC
Confidence                    1246777889999999999999999999999999985  3 4   79999999999874

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct

>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

Probab=99.39  E-value=8.3e-12  Score=98.47  Aligned_cols=109  Identities=18%  Similarity=0.277  Sum_probs=88.7

Q ss_pred             CeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHHHHHHHHHhh
Q 020637          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN  245 (323)
Q Consensus       166 ~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~~  245 (323)
                      ++.++++++++.+|++.|.++++..+||.|+  ++++|+++..|+++.+..... .         ..   .+.       
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~~l~~~~~~~~~-~---------~~---~v~-------   59 (111)
T cd04611           2 QILTCPPDTSLAEAASRMRERRISSIVVVDD--GRPLGIVTERDILRLLASGPD-L---------QT---PVG-------   59 (111)
T ss_pred             CceEECCCCcHHHHHHHHHHcCCCEEEEeeC--CEEEEEEeHHHHHHHHhcCCC-C---------Cc---CHH-------
Confidence            5678899999999999999999999999984  799999999999754421100 0         00   011       


Q ss_pred             cccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeecccccc
Q 020637          246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (323)
Q Consensus       246 ~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~  311 (323)
                               ++|.++++++.+++++.+++..|.+++.+++||+|+  + |   +++|+||.+||++
T Consensus        60 ---------~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~~--~-~---~~~Gvi~~~di~~  110 (111)
T cd04611          60 ---------EVMSSPLLTVPADTSLYDARQLMREHGIRHLVVVDD--D-G---ELLGLLSQTDLLQ  110 (111)
T ss_pred             ---------HhcCCCceEECCCCCHHHHHHHHHHcCCeEEEEECC--C-C---cEEEEEEhHHhhc
Confidence                     147778999999999999999999999999999985  3 4   7999999999986

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=99.37  E-value=7.1e-12  Score=125.78  Aligned_cols=115  Identities=14%  Similarity=0.211  Sum_probs=94.0

Q ss_pred             CCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCC--CCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHHHHHHH
Q 020637          164 SGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDF--KGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGK  241 (323)
Q Consensus       164 s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~--~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~  241 (323)
                      .++++++.++++|.+|+++|.++++..+||+|+.  .++++|+||..|+... .   ...             ..+.   
T Consensus       107 i~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~~v-~---~~~-------------~~V~---  166 (505)
T PLN02274        107 VSDPVVKSPSSTISSLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWDFV-N---DRE-------------TKLS---  166 (505)
T ss_pred             cCCCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHhhc-c---ccC-------------CcHH---
Confidence            4789999999999999999999999999999853  3799999999998421 1   000             0011   


Q ss_pred             HHhhcccccCCCCCCCCCC--cEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccccccCc
Q 020637          242 LQLNLKRQMDGNGRPCPRP--LVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCKHFLH  317 (323)
Q Consensus       242 ~~~~~~~~~~~~~~im~~~--~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~~~f~~  317 (323)
                                   ++|++.  ++++.+++++.+|+.+|.++++++|||+|+  + +   +|+||||++||+++..|++
T Consensus       167 -------------eIMt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~--~-g---~LvGvITr~DIlk~~~~p~  225 (505)
T PLN02274        167 -------------EVMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNE--D-G---ELVDLVTRTDVKRVKGYPK  225 (505)
T ss_pred             -------------HHhccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcC--C-C---eEEEEEEHHHHHHHhhCcC
Confidence                         257766  899999999999999999999999999985  3 4   7999999999999944433

>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=99.37  E-value=8.7e-12  Score=97.52  Aligned_cols=103  Identities=17%  Similarity=0.251  Sum_probs=86.0

Q ss_pred             CeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHHHHHHHHHhh
Q 020637          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN  245 (323)
Q Consensus       166 ~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~~  245 (323)
                      +++++..++++.+|++.|.++++..+||+| + ++++|++|..|++..    ... .             .+.+      
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d-~-~~~~Giv~~~~l~~~----~~~-~-------------~~~~------   55 (105)
T cd04599           2 DPITIDPLDSVGRAARLMEKHRIGGLPVVE-D-GKLVGIITSRDVRRA----HPN-R-------------LVAD------   55 (105)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEEE-C-CEEEEEEehHHhhcc----ccc-C-------------CHHH------
Confidence            567889999999999999999999999998 3 799999999998531    000 0             0111      


Q ss_pred             cccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeecccccc
Q 020637          246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (323)
Q Consensus       246 ~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~  311 (323)
                                +|..++.++.+++++.+|+.+|.+++..++||+|+    |   +++|+||..||+.
T Consensus        56 ----------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~----~---~~~G~it~~~l~~  104 (105)
T cd04599          56 ----------AMTREVVTISPEASLLEAKRLMEEKKIERLPVLRE----R---KLVGIITKGTIAL  104 (105)
T ss_pred             ----------HccCCCEEECCCCCHHHHHHHHHHcCCCEeeEEEC----C---EEEEEEEHHHhcc
Confidence                      46778899999999999999999999999999983    5   8999999999974

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=99.37  E-value=1.2e-11  Score=97.18  Aligned_cols=109  Identities=22%  Similarity=0.340  Sum_probs=85.5

Q ss_pred             CeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHHHHHHHHHhh
Q 020637          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN  245 (323)
Q Consensus       166 ~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~~  245 (323)
                      ++++++.++++.+|.+.|.++++..+||+|.  ++++|++|..|+.+.+......   .     .    ..+.       
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~dl~~~~~~~~~~---~-----~----~~~~-------   60 (110)
T cd04609           2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD--GRVVGSIDESDLLDALIEGKAK---F-----S----LPVR-------   60 (110)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCceeeEeeC--CeeEEEEeHHHHHHHHhccccc---c-----C----cCHH-------
Confidence            5678999999999999999999999999994  8999999999997654311100   0     0    0011       


Q ss_pred             cccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637          246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (323)
Q Consensus       246 ~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~  312 (323)
                               ++|.++++++.+++++.+|+.+|.+ . +.+||+|+  + |   +++|+||.+||++|
T Consensus        61 ---------~~~~~~~~~v~~~~~l~~~~~~~~~-~-~~~~vv~~--~-~---~~~Gvvt~~di~~~  110 (110)
T cd04609          61 ---------EVMGEPLPTVDPDAPIEELSELLDR-G-NVAVVVDE--G-G---KFVGIITRADLLKY  110 (110)
T ss_pred             ---------HHhcCCCceeCCCCcHHHHHHHHHh-C-CceeEEec--C-C---eEEEEEeHHHhhcC
Confidence                     1467788999999999999999988 3 45899985  3 5   79999999999976

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote

>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream

Probab=99.36  E-value=1.1e-11  Score=97.19  Aligned_cols=106  Identities=19%  Similarity=0.333  Sum_probs=88.2

Q ss_pred             CCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHHHHHHHHHh
Q 020637          165 GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQL  244 (323)
Q Consensus       165 ~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~  244 (323)
                      ++++++..+.++.+|++.|.+++...+||.| + ++++|+++..|++..     . ..            ..+.+     
T Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d-~-~~~~g~v~~~~l~~~-----~-~~------------~~~~~-----   56 (107)
T cd04610           2 RDVITVSPDNTVKDVIKLIKETGHDGFPVVD-N-GKVVGIVSARDLLGK-----D-PD------------ETVEE-----   56 (107)
T ss_pred             CCcEEECCCCcHHHHHHHHHHcCCCeeeEeE-C-CEEEEEEEHHHhhcc-----C-cc------------ccHHH-----
Confidence            4678899999999999999999999999998 3 899999999998531     0 00            00111     


Q ss_pred             hcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637          245 NLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (323)
Q Consensus       245 ~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~  312 (323)
                                 +|...+.++.+++++.+|+.+|.+++.+++||+|+   .|   +++|+||..||+++
T Consensus        57 -----------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~---~g---~~~Gvi~~~di~~~  107 (107)
T cd04610          57 -----------IMSKDLVVAVPEMDIMDAARVMFRTGISKLPVVDE---NN---NLVGIITNTDVIRS  107 (107)
T ss_pred             -----------hCCCCCeEECCCCCHHHHHHHHHHhCCCeEeEECC---CC---eEEEEEEHHHhhcC
Confidence                       46777899999999999999999999999999985   35   79999999999874

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>TIGR03520 GldE gliding motility-associated protein GldE

Probab=99.36  E-value=6.4e-12  Score=123.38  Aligned_cols=122  Identities=16%  Similarity=0.265  Sum_probs=101.9

Q ss_pred             ccccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhh
Q 020637          152 LSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELET  231 (323)
Q Consensus       152 l~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~  231 (323)
                      |++.+|.|+|..-.++++++.++++.++++.|.+++++.+||++++..+++|||+..|++..+.   .  ...       
T Consensus       188 l~~~~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv~~kDll~~~~---~--~~~-------  255 (408)
T TIGR03520       188 FGNTDTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIKDLLPHLN---K--KNF-------  255 (408)
T ss_pred             cCCCEeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEEEHHHHHhHhc---c--CCC-------
Confidence            4789999999655689999999999999999999999999999875679999999999964321   0  000       


Q ss_pred             hhHHHHHHHHHHhhcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeecccccc
Q 020637          232 HTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (323)
Q Consensus       232 ~~i~~~~~~~~~~~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~  311 (323)
                          .+.+                +|+ ++.+|.+++++.++++.|.+++.|..+|+|+  . |   .++||||..||++
T Consensus       256 ----~l~~----------------~~~-~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE--~-G---~~~GiVT~eDile  308 (408)
T TIGR03520       256 ----DWQS----------------LLR-EPYFVPENKKLDDLLRDFQEKKNHLAIVVDE--Y-G---GTSGLVTLEDIIE  308 (408)
T ss_pred             ----CHHH----------------HcC-CCeEeCCCCcHHHHHHHHHhcCceEEEEEcC--C-C---CEEEEEEHHHHHH
Confidence                0111                354 5689999999999999999999999999995  3 4   6999999999999


Q ss_pred             c
Q 020637          312 C  312 (323)
Q Consensus       312 ~  312 (323)
                      .
T Consensus       309 e  309 (408)
T TIGR03520       309 E  309 (408)
T ss_pred             H
Confidence            8

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.

>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=99.36  E-value=8.1e-12  Score=98.39  Aligned_cols=108  Identities=19%  Similarity=0.300  Sum_probs=85.8

Q ss_pred             CCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHHHHHHHHHh
Q 020637          165 GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQL  244 (323)
Q Consensus       165 ~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~  244 (323)
                      +++++++.++++.+|.+.|.+++...+||.|. .|+++|+|+..|++..   . . . .        .   .+.+     
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~~G~v~~~~l~~~---~-~-~-~--------~---~v~~-----   58 (110)
T cd04601           2 RDPITVSPDATVAEALELMAEYGISGLPVVDD-DGKLVGIVTNRDLRFE---T-D-L-D--------K---PVSE-----   58 (110)
T ss_pred             CCCeEeCCCCcHHHHHHHHHHcCCceEEEEcC-CCEEEEEEEhhHeeec---c-c-C-C--------C---CHHH-----
Confidence            35688899999999999999999999999995 6899999999997421   0 0 0 0        0   0111     


Q ss_pred             hcccccCCCCCCCCCCcEEeCC-CCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637          245 NLKRQMDGNGRPCPRPLVQAGP-YDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (323)
Q Consensus       245 ~~~~~~~~~~~im~~~~vtv~p-d~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~  312 (323)
                                 +|...+..+.+ ++++.+|+.+|.+++.+++||+|+   .|   +++|+||.+|+++.
T Consensus        59 -----------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~---~~---~~~Gvi~~~dil~~  110 (110)
T cd04601          59 -----------VMTPENLLTTVEGTSLEEALELLHEHKIEKLPVVDD---EG---KLKGLITVKDIEKR  110 (110)
T ss_pred             -----------hcccCceEEecCCCCHHHHHHHHHHhCCCeeeEEcC---CC---CEEEEEEhhhhhcC
Confidence                       45555566666 999999999999999999999984   34   79999999999863

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.

>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.35  E-value=1.3e-11  Score=103.30  Aligned_cols=133  Identities=18%  Similarity=0.343  Sum_probs=93.4

Q ss_pred             CeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCC--------CCCChhhhhhhhHHHH
Q 020637          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNG--------SNLTEEELETHTISAW  237 (323)
Q Consensus       166 ~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~--------~~l~~~~l~~~~i~~~  237 (323)
                      +++++..++++.+|++.|.++++.++||+|+  ++++|++|..|++..+.......        ..+. ..+.  ++..|
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~   76 (143)
T cd04634           2 NPITCNADDTISDAARLLRENKISGAPVLDG--GKLVGIVSESDILKLLVTHDPSGNLWLPSPLELIE-LPLR--EFINW   76 (143)
T ss_pred             CcEEecCCCCHHHHHHHHHHcCCCcceEeEC--CeEEEEecHHHHHHHHHhccCccccccCCcceeee-ccch--heeeh
Confidence            5688999999999999999999999999994  79999999999987654221100        0000 0000  00112


Q ss_pred             HHHHHHhhcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeecccccc
Q 020637          238 KVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (323)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~  311 (323)
                      .+....... .....+.++|..++.++.+++++.+|+..|.+++.+++||+|.    |   +++|+||.+|+++
T Consensus        77 ~~~~~~~~~-~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~----~---~~~Gvvt~~dl~~  142 (143)
T cd04634          77 EETKRALTD-AGKMKVRDIMTKKVITISPDASIEDAAELMVRHKIKRLPVVED----G---RLVGIVTRGDIIE  142 (143)
T ss_pred             HHHHHHHHH-HhcCCHHHHcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC----C---EEEEEEEHHHhhc
Confidence            111110000 0000122467888999999999999999999999999999983    4   7999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=99.35  E-value=1.8e-11  Score=98.22  Aligned_cols=120  Identities=19%  Similarity=0.339  Sum_probs=90.3

Q ss_pred             CeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHHHHHHHHHhh
Q 020637          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN  245 (323)
Q Consensus       166 ~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~~  245 (323)
                      ++.+++.++++.+|++.|.+++...+||+|. +++++|+|+..|++........... .  ...     ......     
T Consensus         2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~-~~~~~G~v~~~~l~~~~~~~~~~~~-~--~~~-----~~~~~~-----   67 (121)
T cd04584           2 DVVTITPTTTIAEALELMREHKIRHLPVVDE-EGRLVGIVTDRDLRDASPSPFTTLS-E--HEL-----YLLLKM-----   67 (121)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCcccEECC-CCcEEEEEEHHHHHHHhhhhcccch-h--hhh-----hhhcCc-----
Confidence            5678899999999999999999999999995 6899999999998754322111000 0  000     000000     


Q ss_pred             cccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637          246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (323)
Q Consensus       246 ~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~  312 (323)
                            .+.++|..+++++.+++++.+++.+|.+++.+++||+|+    |   +++|++|.+||+++
T Consensus        68 ------~v~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~~----~---~~~Gvv~~~di~~~  121 (121)
T cd04584          68 ------PVKEIMTKDVITVHPLDTVEEAALLMREHRIGCLPVVED----G---RLVGIITETDLLRT  121 (121)
T ss_pred             ------CHHHHhhCCCeEECCCCcHHHHHHHHHHcCCCeEEEeeC----C---EEEEEEEHHHhhcC
Confidence                  011246778899999999999999999999999999983    4   79999999999864

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in

>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=99.35  E-value=1.4e-11  Score=98.50  Aligned_cols=107  Identities=19%  Similarity=0.302  Sum_probs=84.9

Q ss_pred             CeEEEecchhHHHHHHHHHHCCCCeeeeEeCC--CCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHHHHHHHHH
Q 020637          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDF--KGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQ  243 (323)
Q Consensus       166 ~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~--~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~  243 (323)
                      +++++..++++.+|.+.|.++++..+||+|..  .++++|+|+..|+... .   ....             .+.+    
T Consensus         3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~~~-~---~~~~-------------~v~~----   61 (114)
T cd04602           3 DPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDFL-T---DSET-------------PLSE----   61 (114)
T ss_pred             CCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHhhhh-h---ccCC-------------CHHH----
Confidence            46788899999999999999999999999842  5899999999998421 1   0000             0111    


Q ss_pred             hhcccccCCCCCCCCCCcEEeCC--CCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeecccccc
Q 020637          244 LNLKRQMDGNGRPCPRPLVQAGP--YDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (323)
Q Consensus       244 ~~~~~~~~~~~~im~~~~vtv~p--d~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~  311 (323)
                                  +|.....++.+  ++++.+++.+|.+++++.+||+|+  + |   +++|+||..||++
T Consensus        62 ------------~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~~--~-~---~~~Gvit~~di~~  113 (114)
T cd04602          62 ------------VMTPREVLVVAPTGITLEEANEILRESKKGKLPIVND--D-G---ELVALVTRSDLKK  113 (114)
T ss_pred             ------------hcCCCceEEECCCCCCHHHHHHHHHhcCCCceeEECC--C-C---eEEEEEEHHHhhc
Confidence                        46666666755  999999999999999999999985  3 4   7999999999975

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos

>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.35  E-value=2.5e-11  Score=94.60  Aligned_cols=112  Identities=28%  Similarity=0.492  Sum_probs=90.5

Q ss_pred             CeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHHHHHHHHHhh
Q 020637          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN  245 (323)
Q Consensus       166 ~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~~  245 (323)
                      ++++++.+.++.+|.+.|.+++...+||+|+ .++++|+++..|++..+......       ...     ...       
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~G~v~~~~l~~~~~~~~~~-------~~~-----~~~-------   61 (113)
T cd02205           2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDD-DGRLVGIVTERDLLRALAEGGLD-------PLV-----TVG-------   61 (113)
T ss_pred             CceEecCCCCHHHHHHHHHhcCCceEEEECC-CCCEEEEEeHHHHHHHHHhccCC-------ccc-----cHH-------
Confidence            5678899999999999999999999999995 58999999999997655321110       000     001       


Q ss_pred             cccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637          246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (323)
Q Consensus       246 ~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~  312 (323)
                               ++|..++.++.+++++.+++..|.+++.+++||+|.  + +   +++|+||..|++++
T Consensus        62 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~--~-~---~~~G~i~~~dl~~~  113 (113)
T cd02205          62 ---------DVMTRDVVTVSPDTSLEEAAELMLEHGIRRLPVVDD--E-G---RLVGIVTRSDILRA  113 (113)
T ss_pred             ---------HHhcCCceecCCCcCHHHHHHHHHHcCCCEEEEEcC--C-C---cEEEEEEHHHhhcC
Confidence                     146778899999999999999999999999999985  3 5   79999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=99.35  E-value=5.4e-12  Score=125.70  Aligned_cols=115  Identities=12%  Similarity=0.122  Sum_probs=96.4

Q ss_pred             ccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhh
Q 020637          154 THTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHT  233 (323)
Q Consensus       154 ~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~  233 (323)
                      ..+.+++|  .++++++.+++++.+|+++|.++++..+||+|+  ++++|+||.+|+..    . . .     .      
T Consensus        87 ~VKv~eim--~~~pvtv~p~~tI~eA~~lm~~~~~~~~vVvD~--gklvGIVT~rDL~~----~-~-~-----~------  145 (475)
T TIGR01303        87 FVKSRDLV--LDTPITLAPHDTVSDAMALIHKRAHGAAVVILE--DRPVGLVTDSDLLG----V-D-R-----F------  145 (475)
T ss_pred             hcchhhcc--ccCCeEECCCCCHHHHHHHHHhcCCeEEEEEEC--CEEEEEEEHHHhhc----C-C-C-----C------
Confidence            45667887  568899999999999999999999999999984  68999999999721    1 0 0     0      


Q ss_pred             HHHHHHHHHHhhcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637          234 ISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (323)
Q Consensus       234 i~~~~~~~~~~~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~  312 (323)
                       ..+.                ++|+++++++.+++++.+|+.+|.++++++|||+|+   +|   +++||||++||+++
T Consensus       146 -~~V~----------------dIMt~~litv~~~~sL~eAl~lM~~~~i~~LPVVD~---~g---~LvGIIT~~DLl~~  201 (475)
T TIGR01303       146 -TQVR----------------DIMSTDLVTAPADTEPRKAFDLLEHAPRDVAPLVDA---DG---TLAGILTRTGALRA  201 (475)
T ss_pred             -CCHH----------------HHccCCceEeCCCCcHHHHHHHHHHcCCCEEEEEcC---CC---eEEEEEEHHHHHHH
Confidence             0111                258999999999999999999999999999999985   35   79999999999997

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes

Probab=99.33  E-value=2.4e-11  Score=101.15  Aligned_cols=116  Identities=16%  Similarity=0.115  Sum_probs=80.8

Q ss_pred             CeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHHHHHHHHHhh
Q 020637          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN  245 (323)
Q Consensus       166 ~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~~  245 (323)
                      +++++.+++++.+|++.|.++++.++||+|+ .++++|+||..|+++.+............+.+.... ..+.++...  
T Consensus         2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~-~g~l~Givt~~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~v~~i~~~--   77 (133)
T cd04592           2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDS-DDFLEGILTLGDIQRFLFTNKTTRVQPEDETKQTNT-CLVSSVCTK--   77 (133)
T ss_pred             CceEECCCCCHHHHHHHHHHcCCCEEEEECC-CCeEEEEEEHHHHHHHHhhccccccccchhhccccc-ccHHHHhhh--
Confidence            5788999999999999999999999999995 689999999999987664221100000000000000 001111100  


Q ss_pred             cccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEec
Q 020637          246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHS  290 (323)
Q Consensus       246 ~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~  290 (323)
                           ..+.+.|+++++++.++++|.+|+.+|.++++++|||+|+
T Consensus        78 -----~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~  117 (133)
T cd04592          78 -----GISYGGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKR  117 (133)
T ss_pred             -----hhhhcccCCCCEEECCCCCHHHHHHHHHHcCCCcCCEecC
Confidence                 0011236788999999999999999999999999999986

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=99.33  E-value=3.6e-11  Score=120.59  Aligned_cols=114  Identities=17%  Similarity=0.275  Sum_probs=95.3

Q ss_pred             cccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHH
Q 020637          157 VYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISA  236 (323)
Q Consensus       157 ~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~  236 (323)
                      ..|+|  ..++++++++.++.+|+++|.++++..+||+|+ .++++|+||.+|+....    ...             ..
T Consensus        89 ~~dim--~~~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~-~g~lvGiVt~~DL~~~~----~~~-------------~~  148 (486)
T PRK05567         89 SESGV--VTDPVTVTPDTTLAEALALMARYGISGVPVVDE-NGKLVGIITNRDVRFET----DLS-------------QP  148 (486)
T ss_pred             hhhcc--cCCCeEeCCCCCHHHHHHHHHHhCCCEEEEEcc-CCEEEEEEEHHHhhhcc----cCC-------------Cc
Confidence            45667  478999999999999999999999999999995 78999999999984210    000             01


Q ss_pred             HHHHHHHhhcccccCCCCCCCC-CCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637          237 WKVGKLQLNLKRQMDGNGRPCP-RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (323)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~im~-~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~  312 (323)
                      +.+                +|. ++++++.+++++.+|+.+|.+++++.+||+|+   .|   +++|+||.+||+++
T Consensus       149 V~d----------------im~~~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe---~g---~lvGiIT~~DLl~~  203 (486)
T PRK05567        149 VSE----------------VMTKERLVTVPEGTTLEEALELLHEHRIEKLPVVDD---NG---RLKGLITVKDIEKA  203 (486)
T ss_pred             HHH----------------HcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcC---CC---cEEEEEEhHHhhhh
Confidence            111                466 78999999999999999999999999999985   35   79999999999987

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=99.30  E-value=3.3e-11  Score=120.87  Aligned_cols=114  Identities=19%  Similarity=0.271  Sum_probs=93.3

Q ss_pred             CCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCC--CCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHHHHHHH
Q 020637          164 SGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDF--KGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGK  241 (323)
Q Consensus       164 s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~--~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~  241 (323)
                      ..+++++.+++++.+|.++|.++++..+||+|++  .++++|+||.+|+..    . ... .        .   .+.   
T Consensus       103 i~dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~~----~-~~~-~--------~---~V~---  162 (495)
T PTZ00314        103 IMDPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDIDF----V-KDK-S--------T---PVS---  162 (495)
T ss_pred             ccCCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHhh----c-ccC-C--------C---CHH---
Confidence            3677899999999999999999999999999853  379999999999841    1 000 0        0   011   


Q ss_pred             HHhhcccccCCCCCCCCC--CcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccccccC
Q 020637          242 LQLNLKRQMDGNGRPCPR--PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCKHFL  316 (323)
Q Consensus       242 ~~~~~~~~~~~~~~im~~--~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~~~f~  316 (323)
                                   ++|++  +++++.+++++.||+.+|.+++++.+||+|+  + +   +++|+||.+||++...|+
T Consensus       163 -------------diMt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~--~-g---~liGIIT~~DIl~~~~~p  220 (495)
T PTZ00314        163 -------------EVMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVND--N-G---ELVALVSRSDLKKNRGYP  220 (495)
T ss_pred             -------------HhhCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcC--C-C---cEEEEEEehHhhhcccCc
Confidence                         25776  8999999999999999999999999999985  3 4   799999999999984444

>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE

Probab=99.30  E-value=1.6e-11  Score=97.21  Aligned_cols=102  Identities=18%  Similarity=0.342  Sum_probs=82.7

Q ss_pred             EecchhHHHHHHHHHHCC-----CCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHHHHHHHHHh
Q 020637          170 LDVNLAVKQAFHVLYEQG-----LPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQL  244 (323)
Q Consensus       170 vd~~~~v~~A~~~l~~~~-----i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~  244 (323)
                      +.+++++.+|++.|.+++     +..+||+|+ .++++|+||..|++.    . . . .           ..+.+     
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~-~~~~~G~v~~~~l~~----~-~-~-~-----------~~v~~-----   57 (109)
T cd04606           2 VREDWTVGEALEYLRRNADDPETIYYIYVVDE-EGRLLGVVSLRDLLL----A-D-P-D-----------TPVSD-----   57 (109)
T ss_pred             ccccCcHHHHHHHHHhccCcccceeEEEEECC-CCCEEEEEEHHHHhc----C-C-C-c-----------chHHH-----
Confidence            567889999999999888     578999985 689999999999853    0 0 0 0           00111     


Q ss_pred             hcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637          245 NLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (323)
Q Consensus       245 ~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~  312 (323)
                                 +|..++.++.+++++.+++..|.+++.+.+||+|+   .|   +++|+||..||+++
T Consensus        58 -----------~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~---~~---~~~Gvit~~dll~~  108 (109)
T cd04606          58 -----------IMDTDVISVSADDDQEEVARLFEKYDLLALPVVDE---EG---RLVGIITVDDVIDV  108 (109)
T ss_pred             -----------HhCCCCeEEcCCCCHHHHHHHHHHcCCceeeeECC---CC---cEEEEEEhHHhhhh
Confidence                       46777899999999999999999999999999985   35   79999999999864

MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>TIGR00393 kpsF KpsF/GutQ family protein

Probab=99.30  E-value=2.1e-11  Score=112.71  Aligned_cols=114  Identities=16%  Similarity=0.128  Sum_probs=92.6

Q ss_pred             ccccccccCCCCC-eEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhh
Q 020637          154 THTVYELLPDSGK-VTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETH  232 (323)
Q Consensus       154 ~~~~~dvmp~s~~-vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~  232 (323)
                      -.++.|+|.  .+ ++++.+++++.+|++.|.+.++..+||+|+ +++++|+||..|+++.+... .   ..     +  
T Consensus       154 ~~~v~~im~--~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~-~g~~~Givt~~dl~~~~~~~-~---~~-----~--  219 (268)
T TIGR00393       154 LVKVKDLMQ--TTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDE-NNQLVGVFTDGDLRRALLGG-G---SL-----K--  219 (268)
T ss_pred             hhhHHHHhC--CCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeC-CCCEEEEEEcHHHHHHHhcC-C---cc-----c--
Confidence            368899994  55 889999999999999999999999999995 68999999999997643210 0   00     0  


Q ss_pred             hHHHHHHHHHHhhcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEee
Q 020637          233 TISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLAS  305 (323)
Q Consensus       233 ~i~~~~~~~~~~~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT  305 (323)
                        ..+.                ++|.++++++.+++++.+|+.+|.+++++++||+|+   +|   +++|+|+
T Consensus       220 --~~v~----------------~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~g---~l~GvI~  268 (268)
T TIGR00393       220 --SEVR----------------DFMTLGPKTFKLDALLLEALEFLERRKITSLVVVDD---HN---KVLGVLH  268 (268)
T ss_pred             --CcHH----------------HhCCCCCeEECCCCcHHHHHHHHHHcCCcEEEEECC---CC---eEEEEEC
Confidence              0011                258889999999999999999999999999999985   35   7999985

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.

>cd02858 Esterase_N_term Esterase N-terminal domain

Probab=99.29  E-value=1.7e-11  Score=94.47  Aligned_cols=75  Identities=27%  Similarity=0.387  Sum_probs=62.4

Q ss_pred             EEEEEe-eCCCceEEEEeccCCCCCCCCCCCCCCCCCeEEEEEE-eCCceEEEEEEEcCeeecCCCCCeeeCCCCccceE
Q 020637           22 PVRFIW-PNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICR-LPPGHHQYKFYVDGEWRHDENQPHVSGNYGVVNCV   99 (323)
Q Consensus        22 ~v~F~w-~~~~~~V~l~Gsf~~W~~~~~m~~~~~~~g~~~~~~~-LppG~y~YkFiVDG~w~~d~~~p~~~d~~G~~nnv   99 (323)
                      .++|+. .+.|++|.|.|+|++|.. .+|++.+  +|.|++++. |++|.|+|+|+|||.|+.||.++...-..+...|.
T Consensus         7 ~v~F~vwAP~A~~V~L~~~~~~~~~-~~m~~~~--~G~W~~~v~~l~~g~Y~Y~~~vdg~~~~DP~s~~~~~~~~~~~~~   83 (85)
T cd02858           7 TVTFRLFAPKANEVQVRGSWGGAGS-HPMTKDE--AGVWSVTTGPLAPGIYTYSFLVDGVRVIDPSNPTTKPGRQVDTSG   83 (85)
T ss_pred             cEEEEEECCCCCEEEEEeecCCCcc-EeCeECC--CeEEEEEECCCCCcEEEEEEEECCeEecCCCCCceeeccccccee
Confidence            578886 457999999999998864 7999875  799999984 88899999999999999999999877445554444

Esterases catalyze the hydrolysis of organic esters to release an alcohol or thiol and acid. The term can be applied to enzymes that hydrolyze carboxylate, phosphate and sulphate esters, but is more often restricted to the first class of substrate. The N-terminus of esterase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.

>TIGR00400 mgtE Mg2+ transporter (mgtE)

Probab=99.28  E-value=2.2e-11  Score=121.07  Aligned_cols=123  Identities=19%  Similarity=0.277  Sum_probs=101.2

Q ss_pred             hhhhhc--cccccccccCCCCCeEEEecchhHHHHHHHHHH-----CCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcC
Q 020637          147 RISSFL--STHTVYELLPDSGKVTALDVNLAVKQAFHVLYE-----QGLPMVPLWDDFKGRFVGVLSALDFILILRELGT  219 (323)
Q Consensus       147 ~~~~~l--~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~-----~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~  219 (323)
                      .+++.+  ...++.++|  +.++++++.+.++.+|++.|.+     +++..++|+|+ .++++|+|+.+|++.    . .
T Consensus       121 ~i~~ll~~~e~tvg~iM--t~~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~-~~~l~GvV~l~dLl~----a-~  192 (449)
T TIGR00400       121 AINLLLSYSDDSAGRIM--TIEYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNE-SKHLKGVLSIRDLIL----A-K  192 (449)
T ss_pred             HHHHHhCCCcchHHHhC--cCceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECC-CCeEEEEEEHHHHhc----C-C
Confidence            344444  578999999  4789999999999999999986     57788999985 689999999999852    1 0


Q ss_pred             CCCCCChhhhhhhhHHHHHHHHHHhhcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCccc
Q 020637          220 NGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQE  299 (323)
Q Consensus       220 ~~~~l~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~  299 (323)
                       +.    .        .+.                ++|+++++++.+++++.+|++.|.++++..+||+|+   .|   +
T Consensus       193 -~~----~--------~v~----------------~im~~~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~---~g---~  237 (449)
T TIGR00400       193 -PE----E--------ILS----------------SIMRSSVFSIVGVNDQEEVARLIQKYDFLAVPVVDN---EG---R  237 (449)
T ss_pred             -CC----C--------cHH----------------HHhCCCCeeECCCCCHHHHHHHHHHcCCCEEeEEcC---CC---e
Confidence             10    0        011                257888999999999999999999999999999985   35   8


Q ss_pred             EEEEeeccccccc
Q 020637          300 ILYLASLSDILKC  312 (323)
Q Consensus       300 lvGIIT~~dIl~~  312 (323)
                      ++|+||..|+++.
T Consensus       238 lvGiIt~~Dil~~  250 (449)
T TIGR00400       238 LVGIVTVDDIIDV  250 (449)
T ss_pred             EEEEEEHHHHHHH
Confidence            9999999999987

This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.

>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional

Probab=99.27  E-value=3.5e-11  Score=122.43  Aligned_cols=149  Identities=19%  Similarity=0.241  Sum_probs=105.2

Q ss_pred             cccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCC--------------
Q 020637          155 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTN--------------  220 (323)
Q Consensus       155 ~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~--------------  220 (323)
                      .+|.|+|  .++++++.+++++.+|+++|.+++++.+||+|+ +|+++|+||..|+.+.+......              
T Consensus        68 ~~V~dim--~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~l~Givt~~di~~~~~~~~~~~~~~~~~~t~~~i~  144 (546)
T PRK14869         68 PQVRDLE--IDKPVTVSPDTSLKEAWNLMDENNVKTLPVVDE-EGKLLGLVSLSDLARAYMDILDPEILSKSPTSLENII  144 (546)
T ss_pred             CcHHHhc--CCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcC-CCEEEEEEEHHHHHHHHHhhcchhhhhhcCCCHHHHH
Confidence            6899999  578999999999999999999999999999995 68999999999998754431100              


Q ss_pred             ----------CCCCC------------hhhh----hh---------hhH--H-------------------HHHHHHHHh
Q 020637          221 ----------GSNLT------------EEEL----ET---------HTI--S-------------------AWKVGKLQL  244 (323)
Q Consensus       221 ----------~~~l~------------~~~l----~~---------~~i--~-------------------~~~~~~~~~  244 (323)
                                .....            .+.+    ..         ..+  .                   .+.+..++.
T Consensus       145 ~~L~~~~l~~~~~~~~~~~~~~v~a~~~~~~~~~~~~~~lvi~gdr~d~~~~ai~~~~~~lIlt~g~~~~~~v~~la~~~  224 (546)
T PRK14869        145 RTLDGEVLVGAEEDKVEEGKVVVAAMAPESLLERIEEGDIVIVGDREDIQLAAIEAGVRLLIITGGAPVSEDVLELAKEN  224 (546)
T ss_pred             HhcCcEEEecCcccccccccEEEEEcCHHHHHHhccCCCEEEEcCcHHHHHHHHHcCCCEEEECCCCCCCHHHHHHHHhC
Confidence                      00000            0000    00         000  0                   000000000


Q ss_pred             h---------------cccccCCCCCCCC-CCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccc
Q 020637          245 N---------------LKRQMDGNGRPCP-RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSD  308 (323)
Q Consensus       245 ~---------------~~~~~~~~~~im~-~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~d  308 (323)
                      +               ...+...+.++|+ ++++++.+++++.+|..+|.+++++++||+|+   +|   +++||||..|
T Consensus       225 ~i~ii~t~~dt~~t~~~l~~~~~V~~iM~~~~~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~---~g---~lvGiit~~d  298 (546)
T PRK14869        225 GVTVISTPYDTFTTARLINQSIPVSYIMTTEDLVTFSKDDYLEDVKEVMLKSRYRSYPVVDE---DG---KVVGVISRYH  298 (546)
T ss_pred             CCeEEEecccHHHHHHHhhcCCCHHHhccCCCcEEECCCCcHHHHHHHHHhcCCCceEEEcC---CC---CEEEEEEHHH
Confidence            0               0001122345799 89999999999999999999999999999985   35   8999999999


Q ss_pred             cccc
Q 020637          309 ILKC  312 (323)
Q Consensus       309 Il~~  312 (323)
                      +++.
T Consensus       299 l~~~  302 (546)
T PRK14869        299 LLSP  302 (546)
T ss_pred             hhcc
Confidence            9987

>TIGR01137 cysta_beta cystathionine beta-synthase

Probab=99.26  E-value=5.1e-11  Score=118.38  Aligned_cols=126  Identities=18%  Similarity=0.280  Sum_probs=99.6

Q ss_pred             hhhhhccccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCCh
Q 020637          147 RISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTE  226 (323)
Q Consensus       147 ~~~~~l~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~  226 (323)
                      ...++|+..++.++|  +++++++.+++++.+|++.|.++++..+||+|+ .++++|+||..|++..+..-....     
T Consensus       327 ~~~~~l~~~~v~~im--~~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~-~~~~~Givt~~dl~~~~~~~~~~~-----  398 (454)
T TIGR01137       327 TVFDVLKNATVKDLH--LPAPVTVHPTETVGDAIEILREYGFDQLPVVTE-AGKVLGSVTLRELLSALFAGKANP-----  398 (454)
T ss_pred             cHHHHhccCCHHHhC--cCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcC-CCeEEEEEEHHHHHHHHhccCCCc-----
Confidence            456668999999999  578999999999999999999999999999995 689999999999976443210000     


Q ss_pred             hhhhhhhHHHHHHHHHHhhcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeec
Q 020637          227 EELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASL  306 (323)
Q Consensus       227 ~~l~~~~i~~~~~~~~~~~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~  306 (323)
                         + .   .+.                ++|.+++.++.+++++.+++.+|.+++   +|||++  + |   +++||||+
T Consensus       399 ---~-~---~v~----------------~im~~~~~~v~~~~~l~~a~~~~~~~~---~~vV~~--~-g---~liGvvt~  446 (454)
T TIGR01137       399 ---D-D---AVS----------------KVMSKKFIQIGEGEKLSDLSKFLEKNS---SAIVTE--E-G---KPIGVVTK  446 (454)
T ss_pred             ---C-C---CHH----------------HhcCCCCeEECCcCcHHHHHHHHHHCC---eeEEEE--C-C---EEEEEEEH
Confidence               0 0   011                257888899999999999999998753   455653  2 4   89999999


Q ss_pred             cccccc
Q 020637          307 SDILKC  312 (323)
Q Consensus       307 ~dIl~~  312 (323)
                      .||+++
T Consensus       447 ~dll~~  452 (454)
T TIGR01137       447 IDLLSF  452 (454)
T ss_pred             HHHHHh
Confidence            999874

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.

>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]

Probab=99.25  E-value=4.2e-11  Score=116.33  Aligned_cols=121  Identities=25%  Similarity=0.351  Sum_probs=95.3

Q ss_pred             CCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHHHHHHHHHh
Q 020637          165 GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQL  244 (323)
Q Consensus       165 ~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~  244 (323)
                      ..++.+..++++.+|+++|.++++.++||+|. .|+.+|+++..|.+...+....+  .+.      .+  .+.+.....
T Consensus       237 ~~i~~i~~~~~v~~al~~m~~~~is~lpvV~~-~g~~v~~~s~~Dv~~l~~~~~~~--~~~------~~--~l~~~~~~~  305 (381)
T KOG1764|consen  237 SNIASISEDTPVIEALKIMSERRISALPVVDE-NGKKVGNYSRFDVIHLAREGTYN--NLD------LS--CLSEALSHR  305 (381)
T ss_pred             hhheeecCCCcHHHHHHHHHhcCcCcceEEcC-CCceecceehhhhhhhhhcCccC--ccc------hh--HHHHHhhhc
Confidence            35999999999999999999999999999996 67779999999998765532211  111      01  011221111


Q ss_pred             hcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637          245 NLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (323)
Q Consensus       245 ~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~  312 (323)
                      .          +...++++|.+..+|.+++..|..+++||+.|+|+   +|   .|+|+||.+||+.+
T Consensus       306 ~----------~~~~~vvtc~~~ssL~~vi~~lv~~~vHRl~VVd~---~~---~l~GvvSLsDil~~  357 (381)
T KOG1764|consen  306 P----------IRFEGVVTCRPTSTLAEVIDKLVAHRVHRLWVVDE---DG---VLVGVISLSDILSY  357 (381)
T ss_pred             c----------cccCccEEEeecchHHHHHHHHHhcCceEEEEEcC---CC---cEEEEeeHHHHHHH
Confidence            1          34566999999999999999999999999999995   35   79999999999999

>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=99.25  E-value=9.6e-11  Score=93.77  Aligned_cols=113  Identities=15%  Similarity=0.167  Sum_probs=86.4

Q ss_pred             CeEEEecchhHHHHHHHHHHCC-CCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHHHHHHHHHh
Q 020637          166 KVTALDVNLAVKQAFHVLYEQG-LPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQL  244 (323)
Q Consensus       166 ~vv~vd~~~~v~~A~~~l~~~~-i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~  244 (323)
                      ++.++.+++++.+|++.|.+.+ +..+||+|+  |+++|+++..|++.++.....      .......            
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~--~~~~G~v~~~~l~~~~~~~~~------~~~~~~~------------   61 (119)
T cd04598           2 PAPTVSPDTTVNDVLERFERDPDLSALAVVDD--GRPVGLIMREALMELLSTPYG------RALYGKK------------   61 (119)
T ss_pred             CcCccCCCCcHHHHHHHHHhCCCccEEEEEEC--CeeEEEEEHHHHHHHHhchhh------HHHHcCC------------
Confidence            4567889999999999999887 899999995  899999999999764432100      0000000            


Q ss_pred             hcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCE---EeEEecCCCCCCcccEEEEeecccccc
Q 020637          245 NLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVAT---VPIIHSTGPAGSCQEILYLASLSDILK  311 (323)
Q Consensus       245 ~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~r---lPVvD~~~~~g~~~~lvGIIT~~dIl~  311 (323)
                             .++++|..+++++.+++++.+|+.+|.+++.++   +||+++  + |   +++|+||..||++
T Consensus        62 -------~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~--~-~---~~~Gvvs~~di~~  118 (119)
T cd04598          62 -------PVSEVMDPDPLIVEADTPLEEVSRLATGRDSQNLYDGFIVTE--E-G---RYLGIGTVKDLLR  118 (119)
T ss_pred             -------cHHHhcCCCcEEecCCCCHHHHHHHHHcCCcccccccEEEee--C-C---eEEEEEEHHHHhc
Confidence                   012258888999999999999999999998754   478875  3 5   8999999999975

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.24  E-value=1.3e-10  Score=91.42  Aligned_cols=105  Identities=21%  Similarity=0.391  Sum_probs=86.8

Q ss_pred             CeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHHHHHHHHHhh
Q 020637          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN  245 (323)
Q Consensus       166 ~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~~  245 (323)
                      ++++++.+.++.+|++.|.++++..+||+|+ .++++|+++..|++..   . ..      .        .+.+      
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~g~v~~~~l~~~---~-~~------~--------~~~~------   56 (106)
T cd04638           2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVKK-SGELVGIITRKDLLRN---P-EE------E--------QLAL------   56 (106)
T ss_pred             CcEEECCCCCHHHHHHHHHHcCCCeEEEEcC-CCcEEEEEEHHHHHhc---c-cc------c--------hHHH------
Confidence            5788999999999999999999999999985 5899999999998531   0 00      0        0111      


Q ss_pred             cccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637          246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (323)
Q Consensus       246 ~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~  312 (323)
                                +|..++.++.+++++.+++.+|.+++.+++||+|+    |   +++|+||..|+++.
T Consensus        57 ----------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~----~---~~~G~it~~d~~~~  106 (106)
T cd04638          57 ----------LMTRDPPTVSPDDDVKEAAKLMVENNIRRVPVVDD----G---KLVGIVTVADIVRA  106 (106)
T ss_pred             ----------HhcCCCceECCCCCHHHHHHHHHHcCCCEEEEEEC----C---EEEEEEEHHHhhcC
Confidence                      36677889999999999999999999999999984    4   79999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]

Probab=99.21  E-value=4.6e-11  Score=111.90  Aligned_cols=118  Identities=17%  Similarity=0.237  Sum_probs=101.2

Q ss_pred             ccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhh
Q 020637          154 THTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHT  233 (323)
Q Consensus       154 ~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~  233 (323)
                      -.++.|+|.-..+...+..+.++.+-.++-.+.|....||+|. ..+++||||.+|+++.      .++    +.     
T Consensus       187 I~~Vedi~~P~~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~-~~kvvGvVt~rDv~~~------~~~----t~-----  250 (432)
T COG4109         187 IITVEDIMTPLEDTSYLRETDTVEDWLDLVEKTGHSRFPVVNR-SMKVVGVVTMRDVLDK------KPS----TT-----  250 (432)
T ss_pred             eeeHHHhccccccceeccccccHHHHHHHHHHcCCCccceecc-cceEEEEEEehhhhcC------CCC----cc-----
Confidence            4678899976778889999999999999999999999999995 7899999999998531      111    11     


Q ss_pred             HHHHHHHHHHhhcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637          234 ISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (323)
Q Consensus       234 i~~~~~~~~~~~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~  312 (323)
                         + +               .+|++.+++|.+.+++.-++.+|+-.++.-+||+|+  + .   +|+||||++|+|++
T Consensus       251 ---i-e---------------KVMtknp~tv~~~tsVAsvaq~MiwE~iem~PVv~~--n-~---~llGiitR~dvlk~  304 (432)
T COG4109         251 ---I-E---------------KVMTKNPITVRAKTSVASVAQMMIWEGIEMLPVVDS--N-N---TLLGIITRQDVLKS  304 (432)
T ss_pred             ---H-H---------------HHhccCCeeecccchHHHHHHHHHhccceeeeEEcC--C-c---eEEEEEEHHHHHHH
Confidence               1 1               169999999999999999999999999999999996  3 3   79999999999999

>PRK11573 hypothetical protein; Provisional

Probab=98.97  E-value=8.7e-09  Score=101.43  Aligned_cols=126  Identities=17%  Similarity=0.192  Sum_probs=104.0

Q ss_pred             ccccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhh
Q 020637          152 LSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELET  231 (323)
Q Consensus       152 l~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~  231 (323)
                      |++.++.|+|..-.+++.++.+.++.++++.+.+++.+.+||++++..+++|+|..+|++..+..   . ...       
T Consensus       184 l~~~~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll~~~~~---~-~~~-------  252 (413)
T PRK11573        184 LEKVTVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTE---K-KEF-------  252 (413)
T ss_pred             cCCCChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHHHHhhc---c-CcC-------
Confidence            47899999998889999999999999999999999999999998766799999999999754321   0 000       


Q ss_pred             hhHHHHHHHHHHhhcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeecccccc
Q 020637          232 HTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (323)
Q Consensus       232 ~~i~~~~~~~~~~~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~  311 (323)
                       .+..+.+                + .+++..|....++.++...|.+++.|-.-|+|+  . |   ...||||..||++
T Consensus       253 -~~~~l~~----------------~-~r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDE--y-G---~~~GiVTleDilE  308 (413)
T PRK11573        253 -TKENMLR----------------A-ADEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDE--Y-G---DIQGLVTVEDILE  308 (413)
T ss_pred             -CHHHHHh----------------h-ccCCeEeCCCCcHHHHHHHHHhcCCeEEEEEec--C-C---CeEEEeeHHHHHH
Confidence             0111111                2 356789999999999999999999999999995  4 4   5999999999999


Q ss_pred             c
Q 020637          312 C  312 (323)
Q Consensus       312 ~  312 (323)
                      .
T Consensus       309 e  309 (413)
T PRK11573        309 E  309 (413)
T ss_pred             H
Confidence            8

>PF00571 CBS: CBS domain CBS domain web page

Probab=98.95  E-value=5e-10  Score=78.76  Aligned_cols=51  Identities=27%  Similarity=0.467  Sum_probs=47.7

Q ss_pred             CCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637          256 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (323)
Q Consensus       256 im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~  312 (323)
                      +|+++++++.+++++.+|+..|.+++++++||+|+   +|   +++|+||.+||+++
T Consensus         4 ~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~---~~---~~~G~is~~dl~~~   54 (57)
T PF00571_consen    4 IMTPPPITVSPDDSLEEALEIMRKNGISRLPVVDE---DG---KLVGIISRSDLLKA   54 (57)
T ss_dssp             HSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEEST---TS---BEEEEEEHHHHHHH
T ss_pred             CCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEec---CC---EEEEEEEHHHHHhh
Confidence            68999999999999999999999999999999985   35   89999999999976

Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....

>PF00571 CBS: CBS domain CBS domain web page

Probab=98.95  E-value=2.2e-09  Score=75.49  Aligned_cols=55  Identities=18%  Similarity=0.466  Sum_probs=50.0

Q ss_pred             ccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHH
Q 020637          158 YELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR  215 (323)
Q Consensus       158 ~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~  215 (323)
                      .|+|  +++++++++++++.+|++.|.+++++.+||+|+ .++++|+||.+|+++.+.
T Consensus         2 ~~~m--~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~-~~~~~G~is~~dl~~~l~   56 (57)
T PF00571_consen    2 GDIM--TPPPITVSPDDSLEEALEIMRKNGISRLPVVDE-DGKLVGIISRSDLLKALL   56 (57)
T ss_dssp             HHHS--BSSSEEEETTSBHHHHHHHHHHHTSSEEEEEST-TSBEEEEEEHHHHHHHHH
T ss_pred             eECC--cCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEec-CCEEEEEEEHHHHHhhhh
Confidence            4678  569999999999999999999999999999995 699999999999987653

Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....

>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]

Probab=98.82  E-value=2.8e-08  Score=98.18  Aligned_cols=126  Identities=20%  Similarity=0.343  Sum_probs=104.6

Q ss_pred             HHHhhhhhc--cccccccccCCCCCeEEEecchhHHHHHHHHHH-----CCCCeeeeEeCCCCeEEEEEehHHHHHHHHh
Q 020637          144 SRDRISSFL--STHTVYELLPDSGKVTALDVNLAVKQAFHVLYE-----QGLPMVPLWDDFKGRFVGVLSALDFILILRE  216 (323)
Q Consensus       144 ~~~~~~~~l--~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~-----~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~  216 (323)
                      ++..++..+  ...++.-+|  ....+++..+.|+.+|+..+++     ..+..+.|+|. +++++|+++.++++.    
T Consensus       119 ~r~~v~~~l~y~e~taG~~M--t~e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~-~~~L~Gvvsl~~Ll~----  191 (451)
T COG2239         119 ERARVRQLLSYPEDTAGRIM--TTEFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDE-KGKLLGVVSLRDLLT----  191 (451)
T ss_pred             HHHHHHHhcCCChhhhhccc--eeeeEEeccCcCHHHHHHHHHHhcccccccceEEEECC-ccceEEEeeHHHHhc----
Confidence            666777777  478899999  6899999999999999999994     46788999995 789999999999851    


Q ss_pred             hcCCCCCCChhhhhhhhHHHHHHHHHHhhcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCC
Q 020637          217 LGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGS  296 (323)
Q Consensus       217 ~~~~~~~l~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~  296 (323)
                        .++     +       ..+.+                +|.+.+++|.+++..++++++|.++++-.+||||+   ++ 
T Consensus       192 --a~~-----~-------~~i~~----------------im~~~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~---~~-  237 (451)
T COG2239         192 --AEP-----D-------ELLKD----------------LMEDDVVSVLADDDQEEVARLFEKYDLLAVPVVDE---DN-  237 (451)
T ss_pred             --CCc-----H-------hHHHH----------------HhcccceeecccCCHHHHHHHHHHhCCeecceECC---CC-
Confidence              111     0       01122                57888999999999999999999999999999996   34 


Q ss_pred             cccEEEEeeccccccc
Q 020637          297 CQEILYLASLSDILKC  312 (323)
Q Consensus       297 ~~~lvGIIT~~dIl~~  312 (323)
                        +|+|+||.-||+..
T Consensus       238 --~LiG~itiDDiidv  251 (451)
T COG2239         238 --RLIGIITIDDIIDV  251 (451)
T ss_pred             --ceeeeeeHHHHHHH
Confidence              89999999999865

>cd02688 E_set E or "early" set of sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies

Probab=98.80  E-value=2.4e-08  Score=75.07  Aligned_cols=70  Identities=33%  Similarity=0.527  Sum_probs=58.9

Q ss_pred             eEEEEEeeC-CCceEEEEeccCCCCCCCCCCCCCCCCCeEEEEEEeCC-ceEEEEEEEcCeeecCCCCCeeeCC
Q 020637           21 VPVRFIWPN-GGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPP-GHHQYKFYVDGEWRHDENQPHVSGN   92 (323)
Q Consensus        21 ~~v~F~w~~-~~~~V~l~Gsf~~W~~~~~m~~~~~~~g~~~~~~~Lpp-G~y~YkFiVDG~w~~d~~~p~~~d~   92 (323)
                      ..++|++.. .+++|.|.++|++|....+|.+..  .|.|++.+.+.. +.|.|+|.|||.|.+++.++...+.
T Consensus         4 ~~v~f~v~ap~a~~v~l~~~~~~~~~~~~~~~~~--~g~w~~~v~~~~~~~~~Y~~~v~~~~~~~~~~~~~~~~   75 (83)
T cd02688           4 KGVTFTVRGPKAQRVSLAGSFNGDTQLIPMTKVE--DGYWEVELPLPSPGKYQYKYVLDGGKGPDEGEPKADEG   75 (83)
T ss_pred             ccEEEEEECCCCCEEEEEEEECCCCCcccCEECC--CceEEEEEcCCCCCCeEEEEEEeCCCCCCCCChhhhcC
Confidence            468898865 689999999999966668998765  699999999887 9999999999999998887655543

These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.

>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]

Probab=98.76  E-value=1.4e-08  Score=93.45  Aligned_cols=101  Identities=19%  Similarity=0.288  Sum_probs=70.3

Q ss_pred             eEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHHHHHHHHH-hhcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHH
Q 020637          200 RFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQ-LNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKIL  278 (323)
Q Consensus       200 ~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~-~~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~  278 (323)
                      +=+| +|.+|+-.+|+.+.... .++.+|++..    +++...+ +.-+.....+.+||+++++++++++++.+|-.+|.
T Consensus       199 ~rvg-fs~~Dld~aL~~~~E~l-DIdrddLe~l----lr~~elqa~~R~~~~LtcadIMSrdVvtv~~~ts~dhA~~ll~  272 (382)
T COG3448         199 QRVG-FSSEDLDAALQRLGETL-DIDRDDLERL----LRETELQALRRRMGELTCADIMSRDVVTVSTDTSIDHARKLLQ  272 (382)
T ss_pred             hccC-CCHHHHHHHHHhcCcee-cCCHHHHHHH----HHHHHHHHHHHHhccccHHHhcCccceecCCcCChHHHHHHHH
Confidence            3445 68889988888765321 2333555432    1111111 10001123356799999999999999999999999


Q ss_pred             HcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637          279 QNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (323)
Q Consensus       279 ~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~  312 (323)
                      +++++.|||+|+  + .   +|+||+|++|+++.
T Consensus       273 ~H~ikaLPV~d~--~-~---rl~GiVt~~dl~~~  300 (382)
T COG3448         273 EHRIKALPVLDE--H-R---RLVGIVTQRDLLKH  300 (382)
T ss_pred             HcCccccccccc--c-c---ceeeeeeHHHHhhc
Confidence            999999999996  3 2   89999999999995

>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]

Probab=98.69  E-value=1.9e-07  Score=92.49  Aligned_cols=132  Identities=20%  Similarity=0.314  Sum_probs=107.1

Q ss_pred             HHHhhhhh--ccccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCC
Q 020637          144 SRDRISSF--LSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNG  221 (323)
Q Consensus       144 ~~~~~~~~--l~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~  221 (323)
                      +..-+.+.  |.++++.++|.--.+++.++.+.++.++.+.+.+++.+..||.++....++|++...|++..+.....  
T Consensus       193 E~~mi~~v~~l~~~~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~~~--  270 (429)
T COG1253         193 EREMINNVLDLDDRTVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDGQS--  270 (429)
T ss_pred             HHHHHHHHhccCCcEeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcCcc--
Confidence            33444444  47999999998889999999999999999999999999999999667899999999999754432100  


Q ss_pred             CCCChhhhhhhhHHHHHHHHHHhhcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEE
Q 020637          222 SNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEIL  301 (323)
Q Consensus       222 ~~l~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lv  301 (323)
                       ..            ...   .            .. +++..|.+..++.+++..|.+.+.|-.-|+|+  - |   .+.
T Consensus       271 -~~------------~~~---~------------~~-~~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDE--y-G---~~~  315 (429)
T COG1253         271 -DL------------DLR---V------------LV-RPPLFVPETLSLSDLLEEFREERTHMAIVVDE--Y-G---GVE  315 (429)
T ss_pred             -cc------------chh---h------------cc-cCCeEecCCCcHHHHHHHHHHhCCeEEEEEEc--C-C---CeE
Confidence             00            000   0            12 27889999999999999999999999999995  4 4   599


Q ss_pred             EEeeccccccc
Q 020637          302 YLASLSDILKC  312 (323)
Q Consensus       302 GIIT~~dIl~~  312 (323)
                      ||+|..||++.
T Consensus       316 GlVTleDIiEe  326 (429)
T COG1253         316 GLVTLEDIIEE  326 (429)
T ss_pred             EEeEHHHHHHH
Confidence            99999999998

>cd02854 Glycogen_branching_enzyme_like_N_term Glycogen branching enzyme-like N-terminus domain

Probab=98.50  E-value=7.5e-07  Score=70.53  Aligned_cols=67  Identities=25%  Similarity=0.446  Sum_probs=50.9

Q ss_pred             EEEEEe-eCCCceEEEEeccCCCCCC-CCCCCCCCCCCeEEEEEEe--------CCc-eEEEEEEE-cCee--ecCCCCC
Q 020637           22 PVRFIW-PNGGRRVSLSGSFTRWSEP-MPMSPSEGCPAVFQIICRL--------PPG-HHQYKFYV-DGEW--RHDENQP   87 (323)
Q Consensus        22 ~v~F~w-~~~~~~V~l~Gsf~~W~~~-~~m~~~~~~~g~~~~~~~L--------ppG-~y~YkFiV-DG~w--~~d~~~p   87 (323)
                      .++|+. .+.|++|+|+|+||+|++. .+|.|.+  .|+|+++++.        +.| .|.|++.. ||.|  +.||-..
T Consensus         6 g~~FrvwAP~A~~V~l~GdFn~W~~~~~~m~k~~--~G~W~~~i~~~~~~~~~~~~g~~Yky~i~~~~G~~~~~~DPyA~   83 (99)
T cd02854           6 GVTYREWAPNAEEVYLIGDFNNWDRNAHPLKKDE--FGVWEITIPPNEDGSPAIPHGSKIKVRMVTPSGEWIDRIPAWIK   83 (99)
T ss_pred             eEEEEEECCCCCEEEEEccCCCCCCcCcccEECC--CCEEEEEECCcccccccCCCCCEEEEEEEeCCCCEEEEcCccee
Confidence            467776 5689999999999999874 6899865  8999999874        445 46666666 7866  5777765


Q ss_pred             eee
Q 020637           88 HVS   90 (323)
Q Consensus        88 ~~~   90 (323)
                      .+.
T Consensus        84 ~~~   86 (99)
T cd02854          84 YVT   86 (99)
T ss_pred             EEE
Confidence            444

Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the glycogen branching enzyme-like proteins may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobi

>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]

Probab=98.46  E-value=2.4e-07  Score=88.70  Aligned_cols=114  Identities=18%  Similarity=0.284  Sum_probs=92.6

Q ss_pred             CCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCC--CCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHHHHHHH
Q 020637          164 SGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDF--KGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGK  241 (323)
Q Consensus       164 s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~--~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~  241 (323)
                      ..+.+++.++.++.+++++...+++..+||....  .++++|+||.+|+ +.+.   .+.  .                 
T Consensus       115 ~~~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~~~KLvG~vtsrdi-~f~~---~~~--~-----------------  171 (503)
T KOG2550|consen  115 INNPIVISPTTTVGEVKEAKEKHGFSGIPVTEDGKRGSKLVGIITSRDI-QFLE---DNS--L-----------------  171 (503)
T ss_pred             ccCCcccCCcccchhhhhhcccccccccccccCCcccceeEEEEehhhh-hhhh---ccc--c-----------------
Confidence            3577899999999999999999999999999632  3689999999997 2221   110  0                 


Q ss_pred             HHhhcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccccccC
Q 020637          242 LQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCKHFL  316 (323)
Q Consensus       242 ~~~~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~~~f~  316 (323)
                                .+.++|+...+++..+.+|.++=.++-+.+-.+|||+|+  . |   +||.||++.|+.+.++++
T Consensus       172 ----------~~~~vmt~~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~--~-g---elva~~~rtDl~k~~~yP  230 (503)
T KOG2550|consen  172 ----------LVSDVMTKNPVTGAQGITLKEANEILKKIKKGKLPVVDD--K-G---ELVAMLSRTDLMKNRDYP  230 (503)
T ss_pred             ----------hhhhhcccccccccccccHHHHHHHHHhhhcCCcceecc--C-C---ceeeeeehhhhhhhcCCC
Confidence                      012368888899999999999999999999999999996  3 5   799999999999985544

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=98.41  E-value=2e-06  Score=83.34  Aligned_cols=104  Identities=11%  Similarity=0.218  Sum_probs=83.8

Q ss_pred             EEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHHHHHHHHHhhcc
Q 020637          168 TALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLK  247 (323)
Q Consensus       168 v~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~~~~  247 (323)
                      +...++.+..+|++.|..++...+.|+|. ++++.|+++..++...+..    ..             .+.+        
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~----~~-------------~~~~--------  306 (363)
T TIGR01186       253 ITKTADKGPRSALQLMRDERVDSLYVVDR-QNKLVGVVDVESIKQARKK----AQ-------------GLQD--------  306 (363)
T ss_pred             eeecCCCCHHHHHHHHHhcCCceEEEEcC-CCCEEEEEeHHHHHHHhhc----CC-------------chhh--------
Confidence            45566778999999999999999999995 7899999999987533221    00             0111        


Q ss_pred             cccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637          248 RQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (323)
Q Consensus       248 ~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~  312 (323)
                              .|...+.++.++++|.+++.+|.+++.. +||+|+   .|   +++|+||+.+|+++
T Consensus       307 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~---~~---~~~g~i~~~~~~~~  356 (363)
T TIGR01186       307 --------VLIDDIYTVDAGTLLRETVRKVLKAGIK-VPVVDE---DQ---RLVGIVTRGSLVDA  356 (363)
T ss_pred             --------hhccCCceECCCCcHHHHHHHHHhCCCC-EEEECC---CC---cEEEEEEHHHHHHH
Confidence                    3456677899999999999999999999 999985   35   89999999999987

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=98.40  E-value=1.7e-06  Score=84.94  Aligned_cols=103  Identities=15%  Similarity=0.192  Sum_probs=81.8

Q ss_pred             EEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHHHHHHHHHhhccc
Q 020637          169 ALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKR  248 (323)
Q Consensus       169 ~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~~~~~  248 (323)
                      ....+.+..+|+..|.+++..++.|+|. +++++|+|+..|+......   . .             .+.+         
T Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~---~-~-------------~~~~---------  341 (400)
T PRK10070        289 RKTPGFGPRSALKLLQDEDREYGYVIER-GNKFVGAVSIDSLKTALTQ---Q-Q-------------GLDA---------  341 (400)
T ss_pred             ccCCCCCHHHHHHHHHhcCCceEEEEcC-CCcEEEEEeHHHHHhhhhc---C-C-------------chhh---------
Confidence            3446678999999999999999999995 7899999999998543220   0 0             0111         


Q ss_pred             ccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637          249 QMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (323)
Q Consensus       249 ~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~  312 (323)
                             .+...+.++.++++|.+|+..|.+.... +||+|+   +|   +++|+||..+++++
T Consensus       342 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~---~~---~~~g~~~~~~~~~~  391 (400)
T PRK10070        342 -------ALIDAPLAVDAQTPLSELLSHVGQAPCA-VPVVDE---DQ---QYVGIISKGMLLRA  391 (400)
T ss_pred             -------hhccCCceeCCCCCHHHHHHHHHhCCCc-EEEECC---CC---cEEEEEEHHHHHHH
Confidence                   2345577999999999999999997766 999985   35   89999999999987

>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]

Probab=98.40  E-value=3.1e-07  Score=77.62  Aligned_cols=53  Identities=19%  Similarity=0.364  Sum_probs=49.3

Q ss_pred             CCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637          253 NGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (323)
Q Consensus       253 ~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~  312 (323)
                      ++.+|++|+++|+||+++.+|+.+|.++++..|||+++    +   ++||-||..+|.++
T Consensus        67 a~~iM~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~----~---k~VGsItE~~iv~~  119 (187)
T COG3620          67 AKTIMHSPVVSVSPDDSISDVVNLMRDKGISQLPVIEE----D---KVVGSITENDIVRA  119 (187)
T ss_pred             HhhhccCCeeEECchhhHHHHHHHHHHcCCccCceeeC----C---eeeeeecHHHHHHH
Confidence            45689999999999999999999999999999999984    4   89999999999987

>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

Probab=98.36  E-value=3.3e-07  Score=83.01  Aligned_cols=54  Identities=24%  Similarity=0.394  Sum_probs=49.8

Q ss_pred             CCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637          252 GNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (323)
Q Consensus       252 ~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~  312 (323)
                      .++.+|+++++++.||++|.||+.+|.+++++..||+|+    +   +++||||.+||.++
T Consensus       173 ~V~~~~s~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~----d---k~vGiit~~dI~~a  226 (294)
T COG2524         173 KVKNLMSKKLITVRPDDTLREAAKLFYEKGIRGAPVVDD----D---KIVGIITLSDIAKA  226 (294)
T ss_pred             hhhhhccCCceEecCCccHHHHHHHHHHcCccCCceecC----C---ceEEEEEHHHHHHH
Confidence            345689999999999999999999999999999999985    3   79999999999887

>PF02922 CBM_48: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); InterPro: IPR004193 O-Glycosyl hydrolases 3

Probab=98.34  E-value=3.5e-07  Score=69.76  Aligned_cols=57  Identities=30%  Similarity=0.594  Sum_probs=45.0

Q ss_pred             eEEEEEe-eCCCceEEEEeccCC-CCCC-CCCCC-CCCCCCeEEEEEE--eCCceEEEEEEEcCe
Q 020637           21 VPVRFIW-PNGGRRVSLSGSFTR-WSEP-MPMSP-SEGCPAVFQIICR--LPPGHHQYKFYVDGE   79 (323)
Q Consensus        21 ~~v~F~w-~~~~~~V~l~Gsf~~-W~~~-~~m~~-~~~~~g~~~~~~~--LppG~y~YkFiVDG~   79 (323)
                      -.++|+. .+.|++|.|++.|++ |... .+|++ .+  .|+|+++++  +++|.++|+|.|||.
T Consensus        11 ~~~~F~vwaP~A~~V~l~~~~~~~~~~~~~~m~~~~~--~G~w~~~~~~~~~~g~~~Y~y~i~~~   73 (85)
T PF02922_consen   11 GGVTFRVWAPNAKSVELVLYFNGSWPAEEYPMTRKDD--DGVWEVTVPGDLPPGGYYYKYRIDGD   73 (85)
T ss_dssp             TEEEEEEE-TTESEEEEEEETTTSSEEEEEEEEEECT--TTEEEEEEEGCGTTTT-EEEEEEEET
T ss_pred             CEEEEEEECCCCCEEEEEEEeeecCCCceEEeeecCC--CCEEEEEEcCCcCCCCEEEEEEEEeC
Confidence            3677776 568999999999999 8654 68984 44  899999998  888988888888764

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. This domain is found in a range of enzymes that act on branched substrates ie. isoamylase, pullulanase and branching enzyme. Isoamylase hydrolyses 1,6-alpha-D-glucosidic branch linkages in glycogen, amylopectin and dextrin; 1,4-alpha-glucan branching enzyme functions in the formation of 1,6-glucosidic linkages of glycogen; and pullulanase is a starch-debranching enzyme.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BHZ_A 2BY2_A 2BY3_A 2BXY_A 2BY1_A 2BHY_A 2BHU_A 2BXZ_A 2BY0_A 2FHB_A ....

>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=98.33  E-value=1.4e-06  Score=87.39  Aligned_cols=153  Identities=14%  Similarity=0.130  Sum_probs=107.2

Q ss_pred             hhccccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCC----CeEEEEEehHHHHHHHHhhc-C--CCC
Q 020637          150 SFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFK----GRFVGVLSALDFILILRELG-T--NGS  222 (323)
Q Consensus       150 ~~l~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~----~~~vGilT~~D~i~~l~~~~-~--~~~  222 (323)
                      .+|++.++.|+|  +.+|+++..-..+...+++|......+.||+|...    +++.|++-.+-++..|+.-. .  .++
T Consensus       577 ~~mr~L~a~ev~--~~pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~vlL~~~~f~~~~~~  654 (762)
T KOG0474|consen  577 PYMRNLTAGEVM--SKPVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLLVLLKKRVFVEESRS  654 (762)
T ss_pred             hHhhhhhHhhhc--cCCeEEEechhhHHHHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHHHHHHhhhhhccCcc
Confidence            457889999999  67999999999999999999999999999999633    47889988888877665321 1  111


Q ss_pred             C--------CChhhhhhhhHHHHHHHHHHhhc-ccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCC
Q 020637          223 N--------LTEEELETHTISAWKVGKLQLNL-KRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGP  293 (323)
Q Consensus       223 ~--------l~~~~l~~~~i~~~~~~~~~~~~-~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~  293 (323)
                      .        ...++++.... .++++...-.+ ....|. .-.|.+.+.+|.++++|..+..+|.+-++|++-|+..  .
T Consensus       655 ~~~~~~~~~~~~~d~a~r~~-~i~dv~lt~~e~~~yvDl-~p~~n~sPytV~~~mSl~k~~~lFR~lGLRhLlVv~~--~  730 (762)
T KOG0474|consen  655 TFDLPVRRKFTFRDFAKREP-SIEDVHLTSEEMEMYVDL-HPFMNPSPYTVPETMSLAKAFILFRQLGLRHLLVVPK--T  730 (762)
T ss_pred             ccCcchhhcCCHHHhhhcCC-chhhhhcchHhHhhcccc-ccccCCCCcccCcccchHHHHHHHHHhcceeEEEecC--C
Confidence            1        11112211100 01110000000 000000 1268888999999999999999999999999999986  3


Q ss_pred             CCCcccEEEEeeccccccc
Q 020637          294 AGSCQEILYLASLSDILKC  312 (323)
Q Consensus       294 ~g~~~~lvGIIT~~dIl~~  312 (323)
                       .   +++||+|++|+.++
T Consensus       731 -~---~~~gilTR~D~~~~  745 (762)
T KOG0474|consen  731 -N---RVVGILTRKDLARY  745 (762)
T ss_pred             -C---ceeEEEehhhhhhH
Confidence             2   68999999999987

>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.32  E-value=6.8e-07  Score=69.96  Aligned_cols=46  Identities=13%  Similarity=0.197  Sum_probs=42.3

Q ss_pred             eEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHH
Q 020637          167 VTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL  212 (323)
Q Consensus       167 vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~  212 (323)
                      ++++.+++++.+|+++|.+++++.+||+|++.|+++|++|.+|+++
T Consensus        52 ~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~~giit~~d~~~   97 (98)
T cd04618          52 LVSIHPERSLFDAALLLLKNKIHRLPVIDPSTGTGLYILTSRRILK   97 (98)
T ss_pred             eEEeCCCCcHHHHHHHHHHCCCCEeeEEECCCCCceEEeehhhhhc
Confidence            7899999999999999999999999999963389999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism

Probab=98.29  E-value=1.2e-06  Score=69.42  Aligned_cols=55  Identities=20%  Similarity=0.333  Sum_probs=49.0

Q ss_pred             cccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHH
Q 020637          155 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL  212 (323)
Q Consensus       155 ~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~  212 (323)
                      .++.++|.  ..+.++.+++++.+|+++|.++++..+||+|+ +++++|+||.+|+++
T Consensus        56 ~~v~~~~~--~~~~~v~~~~~l~~al~~m~~~~~~~lpVvd~-~~~~~Giit~~di~~  110 (111)
T cd04603          56 LKVCEVYI--VPVPIVYCDSKVTDLLRIFRETEPPVVAVVDK-EGKLVGTIYERELLR  110 (111)
T ss_pred             cChhheee--cCCcEECCCCcHHHHHHHHHHcCCCeEEEEcC-CCeEEEEEEhHHhhc
Confidence            45888884  56789999999999999999999999999995 689999999999964

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.23  E-value=1.9e-06  Score=69.01  Aligned_cols=60  Identities=13%  Similarity=0.166  Sum_probs=51.2

Q ss_pred             cccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCC--CeEEEEEehHHHHH
Q 020637          153 STHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFK--GRFVGVLSALDFIL  212 (323)
Q Consensus       153 ~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~--~~~vGilT~~D~i~  212 (323)
                      ...++.++|....++.++++++++.+|+++|.++++..+||+|++.  ++++|+||.+|+++
T Consensus        56 ~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~~  117 (118)
T cd04617          56 QKVPVGVIMTRMPNITTTTPEESVLEAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNITK  117 (118)
T ss_pred             cCCCHHHHhCCCCCcEEECCCCcHHHHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhheec
Confidence            3567888895334789999999999999999999999999999642  69999999999853

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]

Probab=98.23  E-value=4.9e-06  Score=79.25  Aligned_cols=125  Identities=20%  Similarity=0.279  Sum_probs=103.7

Q ss_pred             cccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhh
Q 020637          153 STHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETH  232 (323)
Q Consensus       153 ~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~  232 (323)
                      ...++.|+|-.-..+..+|.+++.++..+.+...-...+|||.++..+.+|||-.+|+++.|.+...    +..++    
T Consensus       198 e~~tV~DIMvpR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~DnIiGvlh~r~llr~l~e~~~----~~k~d----  269 (423)
T COG4536         198 ENLTVSDIMVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDLDNIIGVLHVRDLLRLLNEKNE----FTKED----  269 (423)
T ss_pred             ccceeeeeeccccceeeecCCCCHHHHHHHHhhCCCCceeeecCChhHhhhhhhHHHHHHHhhccCc----ccHhH----
Confidence            6789999998889999999999999999999999999999997666789999999999876653311    11111    


Q ss_pred             hHHHHHHHHHHhhcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637          233 TISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (323)
Q Consensus       233 ~i~~~~~~~~~~~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~  312 (323)
                          +..                 ...++..|...++|.+-...|.+++-|---|||+  - |   .+.|++|..|||..
T Consensus       270 ----~~~-----------------~a~epyFVPe~Tpl~~QL~~F~~~k~hialVVDE--Y-G---~i~GLVTLEDIlEE  322 (423)
T COG4536         270 ----ILR-----------------AADEPYFVPEGTPLSDQLVAFQRNKKHIALVVDE--Y-G---DIQGLVTLEDILEE  322 (423)
T ss_pred             ----HHH-----------------HhcCCeecCCCCcHHHHHHHHHHhcceEEEEEec--c-C---cEEeeeeHHHHHHH
Confidence                111                 1345689999999999999999999999999995  4 5   69999999999987

>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional

Probab=98.21  E-value=6.4e-07  Score=91.30  Aligned_cols=149  Identities=13%  Similarity=0.124  Sum_probs=100.2

Q ss_pred             hhhhhccccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCCh
Q 020637          147 RISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTE  226 (323)
Q Consensus       147 ~~~~~l~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~  226 (323)
                      +.+..-....+.++|. +.+++++.+++++.+|.++|.+++++.+||+|+ +|+++|+||..|++.....-..-   .+.
T Consensus       238 t~~~l~~~~~V~~iM~-~~~~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~-~g~lvGiit~~dl~~~~~~~~iL---VD~  312 (546)
T PRK14869        238 TARLINQSIPVSYIMT-TEDLVTFSKDDYLEDVKEVMLKSRYRSYPVVDE-DGKVVGVISRYHLLSPVRKKVIL---VDH  312 (546)
T ss_pred             HHHHhhcCCCHHHhcc-CCCcEEECCCCcHHHHHHHHHhcCCCceEEEcC-CCCEEEEEEHHHhhccccCceEE---EcC
Confidence            4444556788999994 268999999999999999999999999999995 78999999999997643210000   000


Q ss_pred             hhhhhhhHHHHHHHHHHhhcccccC--CCCCCCCCCcEEe---CCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEE
Q 020637          227 EELETHTISAWKVGKLQLNLKRQMD--GNGRPCPRPLVQA---GPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEIL  301 (323)
Q Consensus       227 ~~l~~~~i~~~~~~~~~~~~~~~~~--~~~~im~~~~vtv---~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lv  301 (323)
                      .+.. .......+.  ...  ...+  ..+++|+..++.+   ....+..-++.+|.++++...|++..    .   .+.
T Consensus       313 ~e~~-q~~~~~~~~--~i~--~iiDHH~~~~~~~~~pi~~~~~~~gst~tiv~~~~~~~~i~~~~~ia~----~---ll~  380 (546)
T PRK14869        313 NEKS-QAVEGIEEA--EIL--EIIDHHRLGDIQTSNPIFFRNEPVGSTSTIVARMYRENGIEPSPEIAG----L---LLA  380 (546)
T ss_pred             cccc-ccccchhhc--eEE--EEecCCccCCCCCCCCcEEEeeeeeeHHHHHHHHHHHcCCCCCHHHHH----H---HHH
Confidence            0000 000000000  000  0000  1234677776655   34566778899999999999999963    3   699


Q ss_pred             EEeeccccccc
Q 020637          302 YLASLSDILKC  312 (323)
Q Consensus       302 GIIT~~dIl~~  312 (323)
                      ||+|.++.+++
T Consensus       381 gIlsDT~~f~~  391 (546)
T PRK14869        381 AILSDTLLFKS  391 (546)
T ss_pred             HHHHHhcCccC
Confidence            99999999987

>TIGR00400 mgtE Mg2+ transporter (mgtE)

Probab=98.20  E-value=1.9e-06  Score=85.90  Aligned_cols=110  Identities=13%  Similarity=0.163  Sum_probs=86.0

Q ss_pred             cccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhH
Q 020637          155 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTI  234 (323)
Q Consensus       155 ~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i  234 (323)
                      .++.++|  ...++++.+++++.+|++.|.++++..+||+|+ .|+++|+||..|+++.+....                
T Consensus       195 ~~v~~im--~~~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~-~g~lvGiIt~~Dil~~l~~~~----------------  255 (449)
T TIGR00400       195 EILSSIM--RSSVFSIVGVNDQEEVARLIQKYDFLAVPVVDN-EGRLVGIVTVDDIIDVIQSEA----------------  255 (449)
T ss_pred             CcHHHHh--CCCCeeECCCCCHHHHHHHHHHcCCCEEeEEcC-CCeEEEEEEHHHHHHHHHhhh----------------
Confidence            4577888  457889999999999999999999999999995 789999999999987665210                


Q ss_pred             HHHHHHHHHhhcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637          235 SAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (323)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~  312 (323)
                        -.+                +|+...++..+++.+.+++..|.++++..|+|.          .+.|++| ..|+..
T Consensus       256 --~ed----------------~~~~~gv~~~~~~~l~~~~~~~~~~R~~wL~v~----------~~~~~~t-~~ii~~  304 (449)
T TIGR00400       256 --TED----------------FYMIAAVKPLDDSYFDTSILVMAKNRIIWLLVL----------LVSSTFT-ATIISN  304 (449)
T ss_pred             --HHH----------------HHHhcCCCCCcchhhhchHHHHHHhccchHHHH----------HHHHHHH-HHHHHH
Confidence              011                233334455567889999999999999999988          4788888 555544

This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.

>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.17  E-value=4e-06  Score=66.67  Aligned_cols=56  Identities=25%  Similarity=0.400  Sum_probs=49.7

Q ss_pred             ccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHH
Q 020637          154 THTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL  212 (323)
Q Consensus       154 ~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~  212 (323)
                      ..++.++|  ...++++.+++++.+|++.|.++++..+||+|+ +++++|+||.+|+++
T Consensus        58 ~~~v~~~~--~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~~~~~Gvi~~~dl~~  113 (114)
T cd04619          58 TAPVENVM--TRAVVSCRPGDLLHDVWQVMKQRGLKNIPVVDE-NARPLGVLNARDALK  113 (114)
T ss_pred             cCCHHHHh--cCCCeeECCCCCHHHHHHHHHHcCCCeEEEECC-CCcEEEEEEhHhhcc
Confidence            45678888  467889999999999999999999999999994 689999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=98.12  E-value=4.5e-06  Score=67.01  Aligned_cols=54  Identities=22%  Similarity=0.439  Sum_probs=49.0

Q ss_pred             cccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHH
Q 020637          155 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFI  211 (323)
Q Consensus       155 ~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i  211 (323)
                      .++.|+|  ..++.++..++++.+|+++|.++++..+||+|+ +++++|+||..|+.
T Consensus        58 ~~v~dim--~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~-~~~l~Givt~~dl~  111 (113)
T cd04597          58 PRVRDVI--NRKPVTARPNDPLREALNLMHEHNIRTLPVVDD-DGTPAGIITLLDLA  111 (113)
T ss_pred             hhHHHhc--CCCCCEECCcCcHHHHHHHHHHcCCCEEEEECC-CCeEEEEEEHHHhh
Confidence            6788999  467889999999999999999999999999995 68999999999984

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=98.12  E-value=5.6e-06  Score=83.33  Aligned_cols=119  Identities=18%  Similarity=0.259  Sum_probs=82.6

Q ss_pred             cccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhH
Q 020637          155 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTI  234 (323)
Q Consensus       155 ~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i  234 (323)
                      .++.++|. ...++++..++++.+|+++|.++++..+||+|+ .++++|+||..|+++.+.+....              
T Consensus       147 ~~V~dim~-~~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe-~g~lvGiIT~~DLl~~~~~p~a~--------------  210 (486)
T PRK05567        147 QPVSEVMT-KERLVTVPEGTTLEEALELLHEHRIEKLPVVDD-NGRLKGLITVKDIEKAEEFPNAC--------------  210 (486)
T ss_pred             CcHHHHcC-CCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcC-CCcEEEEEEhHHhhhhhhCCCcc--------------
Confidence            45778884 267999999999999999999999999999995 78999999999998755321100              


Q ss_pred             HHHHHHHHHhhcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637          235 SAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (323)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~  312 (323)
                         ++..            +.++-...+.+.+++  .+++..|.+.+++. .|+|.  ..|   +..++++..+.++.
T Consensus       211 ---~d~~------------g~l~V~aai~~~~~~--~e~a~~L~~agvdv-ivvD~--a~g---~~~~vl~~i~~i~~  265 (486)
T PRK05567        211 ---KDEQ------------GRLRVGAAVGVGADN--EERAEALVEAGVDV-LVVDT--AHG---HSEGVLDRVREIKA  265 (486)
T ss_pred             ---cccC------------CCEEEEeecccCcch--HHHHHHHHHhCCCE-EEEEC--CCC---cchhHHHHHHHHHh
Confidence               0000            001112233333422  78999999999995 47875  234   67777766665554

>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]

Probab=98.09  E-value=7.2e-06  Score=73.68  Aligned_cols=123  Identities=17%  Similarity=0.256  Sum_probs=101.8

Q ss_pred             cccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhh
Q 020637          153 STHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETH  232 (323)
Q Consensus       153 ~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~  232 (323)
                      ...++.|+|-.-++.+++..+.++.+.+..+.+..-+..||+.+++..+.|||-+.|++..++   .+...++       
T Consensus        65 adl~vrDiMIPRSQM~~l~~~~~l~~~l~~iiesaHSRfPVi~edkD~v~GIL~AKDLL~~~~---~~~~~F~-------  134 (293)
T COG4535          65 ADLRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHVEGILLAKDLLPFMR---SDAEPFD-------  134 (293)
T ss_pred             HHhhHhhhcccHHHheeccccCCHHHHHHHHHHhccccCCcccCCchhhhhhhhHHHHHHHhc---CCccccc-------
Confidence            467888988777899999999999999999999999999999877789999999999965543   2211111       


Q ss_pred             hHHHHHHHHHHhhcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637          233 TISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (323)
Q Consensus       233 ~i~~~~~~~~~~~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~  312 (323)
                          +++                 +-+|.+.|...-.|...++-|..++.|---|||+  -+    -+-|++|..|||.-
T Consensus       135 ----i~~-----------------lLRPav~VPESKrvd~lLkeFR~~RnHMAIViDE--fG----gVsGLVTIEDiLEq  187 (293)
T COG4535         135 ----IKE-----------------LLRPAVVVPESKRVDRLLKEFRSQRNHMAIVIDE--FG----GVSGLVTIEDILEQ  187 (293)
T ss_pred             ----HHH-----------------hcccceecccchhHHHHHHHHHhhcCceEEEEec--cC----CeeeeEEHHHHHHH
Confidence                122                 3577888999999999999999999999999996  44    49999999999975

>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50

Probab=98.07  E-value=4.8e-06  Score=65.92  Aligned_cols=57  Identities=21%  Similarity=0.457  Sum_probs=49.2

Q ss_pred             ccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHH
Q 020637          154 THTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFI  211 (323)
Q Consensus       154 ~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i  211 (323)
                      ..++.++|....++.++++++++.+|+++|.++++..+||+|+ .++++|+||..|++
T Consensus        56 ~~~v~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~~-~~~~~Gvl~~~di~  112 (114)
T cd04801          56 QTTVIQVMTPAAKLVTVLSEESLAEVLKLLEEQGLDELAVVED-SGQVIGLITEADLL  112 (114)
T ss_pred             ccchhhhhcccccceEECCCCcHHHHHHHHHHCCCCeeEEEcC-CCcEEEEEecccee
Confidence            3567788854445779999999999999999999999999985 67999999999985

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.04  E-value=1e-05  Score=65.17  Aligned_cols=50  Identities=20%  Similarity=0.454  Sum_probs=44.9

Q ss_pred             ccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHH
Q 020637          158 YELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDF  210 (323)
Q Consensus       158 ~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~  210 (323)
                      .++|  +.++++++++.++.+|++.|.++++..+||+|+ .++++|+||.+|+
T Consensus        71 ~~~~--~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~~~~vGiit~~di  120 (123)
T cd04627          71 LTIG--TSDVISINGDQPLIDALHLMHNEGISSVAVVDN-QGNLIGNISVTDV  120 (123)
T ss_pred             cccC--cCCceEeCCCCCHHHHHHHHHHcCCceEEEECC-CCcEEEEEeHHHh
Confidence            3456  578899999999999999999999999999985 5899999999996

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.01  E-value=1.9e-05  Score=62.09  Aligned_cols=54  Identities=20%  Similarity=0.337  Sum_probs=48.1

Q ss_pred             cccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHH
Q 020637          155 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL  212 (323)
Q Consensus       155 ~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~  212 (323)
                      .++.++|  ...+.+++.++++.+|+++|.+++...+||+|  +++++|+||.+|++.
T Consensus        58 ~~v~~~~--~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~--~~~~~Gvvt~~dl~~  111 (112)
T cd04625          58 TTVRAIM--NPEPIVASPDDSIDEVRRLMVERHLRYLPVLD--GGTLLGVISFHDVAK  111 (112)
T ss_pred             CCHHHHh--CCCCeEECCCCCHHHHHHHHHHcCCCeeeEEE--CCEEEEEEEHHHhhc
Confidence            4688888  45688999999999999999999999999998  379999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.98  E-value=1.1e-05  Score=62.51  Aligned_cols=61  Identities=13%  Similarity=0.297  Sum_probs=49.6

Q ss_pred             hhccccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHH
Q 020637          150 SFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL  212 (323)
Q Consensus       150 ~~l~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~  212 (323)
                      ++.+-.+..|++.. ..+.+++++.++.+|+++|.++++..+||+|+ .++++|+||.+|+++
T Consensus        35 ~~~Giv~~~dl~~~-~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~-~~~~~Giit~~di~~   95 (96)
T cd04614          35 KLSGIITERDLIAK-SEVVTATKRTTVSECAQKMKRNRIEQIPIING-NDKLIGLLRDHDLLK   95 (96)
T ss_pred             CEEEEEEHHHHhcC-CCcEEecCCCCHHHHHHHHHHhCCCeeeEECC-CCcEEEEEEHHHhhc
Confidence            34455555565542 23889999999999999999999999999995 589999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=97.97  E-value=1.1e-05  Score=64.80  Aligned_cols=51  Identities=24%  Similarity=0.361  Sum_probs=46.0

Q ss_pred             CCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeecccccc
Q 020637          255 RPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (323)
Q Consensus       255 ~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~  311 (323)
                      ++|.+++.++.+++++.+|+..|.+++++.+||+|+   +|   +++||||..||.+
T Consensus        62 dim~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~---~~---~l~Givt~~dl~~  112 (113)
T cd04597          62 DVINRKPVTARPNDPLREALNLMHEHNIRTLPVVDD---DG---TPAGIITLLDLAE  112 (113)
T ss_pred             HhcCCCCCEECCcCcHHHHHHHHHHcCCCEEEEECC---CC---eEEEEEEHHHhhc
Confidence            368889999999999999999999999999999985   35   8999999999864

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=97.97  E-value=1.8e-05  Score=62.09  Aligned_cols=56  Identities=20%  Similarity=0.434  Sum_probs=49.7

Q ss_pred             ccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHH
Q 020637          154 THTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL  212 (323)
Q Consensus       154 ~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~  212 (323)
                      ..++.++|.  ..++++++++++.+|+++|.+++...+||+|+ +++++|++|..|++.
T Consensus        52 ~~~v~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~~G~it~~di~~  107 (108)
T cd04596          52 DTTIEKVMT--KNPITVNPKTSVASVAHMMIWEGIEMLPVVDD-NKKLLGIISRQDVLK  107 (108)
T ss_pred             cccHHHHhc--CCCeEECCCCCHHHHHHHHHHcCCCeeeEEcC-CCCEEEEEEHHHhhc
Confidence            456888884  57899999999999999999999999999994 689999999999853

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.97  E-value=1.3e-05  Score=64.21  Aligned_cols=48  Identities=21%  Similarity=0.417  Sum_probs=43.4

Q ss_pred             CCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637          259 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (323)
Q Consensus       259 ~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~  312 (323)
                      ++++++.+++++.+|+.+|.+++++++||+|+  + |   +++|++|.+||+++
T Consensus         1 ~~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~--~-~---~~~Giv~~~dl~~~   48 (120)
T cd04641           1 KNIATARPDTPLIDVLDMLVERRVSALPIVDE--N-G---KVVDVYSRFDVINL   48 (120)
T ss_pred             CCcEEEcCCCCHHHHHHHHHHcCCCeeeEECC--C-C---eEEEEEeHHHHHHH
Confidence            35789999999999999999999999999985  3 4   79999999999976

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.96  E-value=1.7e-05  Score=64.14  Aligned_cols=54  Identities=19%  Similarity=0.218  Sum_probs=46.8

Q ss_pred             ccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHH
Q 020637          156 TVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL  212 (323)
Q Consensus       156 ~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~  212 (323)
                      .+.++|  ..+++++.+++++.+|+++|.++++..+||+|+ .++++|+||.+|+++
T Consensus        72 ~~~~~~--~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~-~~~~~Giit~~dil~  125 (126)
T cd04642          72 DSDGVK--SRPLITCTPSSTLKEVITKLVANKVHRVWVVDE-EGKPIGVITLTDIIS  125 (126)
T ss_pred             cccccc--cCCCeEECCCCcHHHHHHHHHHhCCcEEEEECC-CCCEEEEEEHHHHhc
Confidence            344566  357899999999999999999999999999995 589999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

Probab=97.95  E-value=1.6e-05  Score=62.77  Aligned_cols=54  Identities=20%  Similarity=0.429  Sum_probs=48.1

Q ss_pred             cccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHH
Q 020637          155 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFI  211 (323)
Q Consensus       155 ~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i  211 (323)
                      .++.++|  ...+.++.+++++.+|+++|.+++...+||+|+ .++++|+||.+|++
T Consensus        58 ~~v~~~~--~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~~Gvit~~di~  111 (113)
T cd04607          58 DPVSEVM--NRNPITAKVGSSREEILALMRERSIRHLPILDE-EGRVVGLATLDDLL  111 (113)
T ss_pred             CCHHHhh--cCCCEEEcCCCCHHHHHHHHHHCCCCEEEEECC-CCCEEEEEEhHHhc
Confidence            4577888  456889999999999999999999999999984 68999999999985

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.95  E-value=1.7e-05  Score=62.80  Aligned_cols=56  Identities=18%  Similarity=0.370  Sum_probs=47.8

Q ss_pred             ccccccccCCCCCeEEEecc--hhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHH
Q 020637          154 THTVYELLPDSGKVTALDVN--LAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL  212 (323)
Q Consensus       154 ~~~~~dvmp~s~~vv~vd~~--~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~  212 (323)
                      ..++.++|.  ..++++.++  +++.+|+++|.+++...+||+|+ +|+++|+||..|+++
T Consensus        57 ~~~i~~~~~--~~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~-~~~~~Gvit~~dl~~  114 (115)
T cd04620          57 DLPIGEVMT--QPVVTLQESEIQDIFTALSLFRQHQIRHLPVLDD-QGQLIGLVTAESIRQ  114 (115)
T ss_pred             ccCHHHhcC--CCcEEEecccccCHHHHHHHHHHhCCceEEEEcC-CCCEEEEEEhHHhhc
Confidence            356778884  467778776  78999999999999999999995 689999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.93  E-value=3.2e-05  Score=60.58  Aligned_cols=55  Identities=24%  Similarity=0.428  Sum_probs=48.6

Q ss_pred             ccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHH
Q 020637          154 THTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL  212 (323)
Q Consensus       154 ~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~  212 (323)
                      ..++.++|.  .+++++..+.++.+|+++|.+++...+||+|+  ++++|+||..|+++
T Consensus        58 ~~~~~~~~~--~~~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~~--~~~~Gvit~~di~~  112 (113)
T cd04623          58 DTPVSEIMT--RNVITVTPDDTVDEAMALMTERRFRHLPVVDG--GKLVGIVSIGDVVK  112 (113)
T ss_pred             ccCHHHhcC--CCcEEECCCCcHHHHHHHHHHcCCCEeEEEeC--CEEEEEEEHHHhhc
Confidence            456788883  57899999999999999999999999999984  79999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd05808 CBM20_alpha_amylase Alpha-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=97.93  E-value=7.2e-05  Score=58.22  Aligned_cols=54  Identities=28%  Similarity=0.482  Sum_probs=44.2

Q ss_pred             eEEEEEeeC---CCceEEEEec---cCCCCCC--CCCCCCCCCCCeEEEEEEeCCc-eEEEEEEE
Q 020637           21 VPVRFIWPN---GGRRVSLSGS---FTRWSEP--MPMSPSEGCPAVFQIICRLPPG-HHQYKFYV   76 (323)
Q Consensus        21 ~~v~F~w~~---~~~~V~l~Gs---f~~W~~~--~~m~~~~~~~g~~~~~~~LppG-~y~YkFiV   76 (323)
                      ++|+|..+.   .|++|+|+|+   +.+|++.  .+|+..+  .+.|++++.||++ .++|||++
T Consensus         1 v~v~F~v~~~t~~ge~l~v~G~~~~lG~W~~~~a~~l~~~~--~~~W~~~v~l~~~~~~eYKy~~   63 (95)
T cd05808           1 VAVTFNVTATTVWGQNVYVVGNVPELGNWSPANAVALSAAT--YPVWSGTVDLPAGTAIEYKYIK   63 (95)
T ss_pred             CeEEEEEEEECCCCCEEEEEeCcHHhCCCChhhCccCCCCC--CCCEEEEEEeCCCCeEEEEEEE
Confidence            467888864   4789999996   7799864  5888754  6789999999987 69999997

This domain is found in several bacterial and fungal alpha-amylases including the maltopentaose-forming amylases (G5-amylases). Most alpha-amylases have, in addition to the C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13, which hydrolyzes internal alpha-1,4-glucosidic bonds in starch and related saccharides, yielding maltotriose and maltose. Two types of soluble substrates are used by alpha-amylases including long substrates (e.g. amylose) and short substrates (e.g. maltodextrins or maltooligosaccharides). The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. lafo

>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.92  E-value=3e-05  Score=61.43  Aligned_cols=55  Identities=16%  Similarity=0.434  Sum_probs=48.7

Q ss_pred             ccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHH
Q 020637          154 THTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL  212 (323)
Q Consensus       154 ~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~  212 (323)
                      ..++.++|.  .+++++.+++++.+|+++|.+++...+||+|+  ++++|+||..|++.
T Consensus        59 ~~~v~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~--~~~~Gvi~~~dl~~  113 (114)
T cd04630          59 RVNVYEIMT--KPLISVSPDMDIKYCARLMERTNIRRAPVVEN--NELIGIISLTDIFL  113 (114)
T ss_pred             ccCHHHHhc--CCCeeECCCCCHHHHHHHHHHcCCCEeeEeeC--CEEEEEEEHHHhhc
Confidence            356778884  57899999999999999999999999999984  89999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=97.92  E-value=2.3e-05  Score=61.54  Aligned_cols=55  Identities=18%  Similarity=0.341  Sum_probs=49.3

Q ss_pred             cccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHH
Q 020637          155 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL  212 (323)
Q Consensus       155 ~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~  212 (323)
                      .+|.++|  .....++..++++.+|+++|.+++...+||+|+ .++++|+||..|+++
T Consensus        58 ~~v~~i~--~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~-~~~~~Gvvs~~dl~~  112 (113)
T cd04587          58 TLVERVM--TPNPVCATSDTPVLEALHLMVQGKFRHLPVVDK-SGQVVGLLDVTKLTH  112 (113)
T ss_pred             CCHHHhc--CCCCeEEcCCCCHHHHHHHHHHcCCCcccEECC-CCCEEEEEEHHHhcc
Confidence            5788998  467889999999999999999999999999985 589999999999853

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai

>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.91  E-value=3.4e-05  Score=60.72  Aligned_cols=57  Identities=25%  Similarity=0.466  Sum_probs=50.0

Q ss_pred             ccccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHH
Q 020637          152 LSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFI  211 (323)
Q Consensus       152 l~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i  211 (323)
                      +...++.++|.  .++.+++.++++.+|++.|.+++...+||+|+ .|+++|++|..|++
T Consensus        55 ~~~~~i~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~g~~~Gvvt~~dl~  111 (113)
T cd04615          55 LKDAKVREVMN--SPVITIDANDSIAKARWLMSNNNISRLPVLDD-KGKVGGIVTEDDIL  111 (113)
T ss_pred             hcCCcHHHhcc--CCceEECCCCcHHHHHHHHHHcCCCeeeEECC-CCeEEEEEEHHHhh
Confidence            34467888884  57899999999999999999999999999985 68999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>PF00686 CBM_20: Starch binding domain; InterPro: IPR002044 O-Glycosyl hydrolases 3

Probab=97.91  E-value=2.9e-05  Score=60.86  Aligned_cols=57  Identities=28%  Similarity=0.542  Sum_probs=47.1

Q ss_pred             eeEEEEEeeC---CCceEEEEeccC---CCCC--CCCCCCCCC--CCCeEEEEEEeCCc-eEEEEEEE
Q 020637           20 LVPVRFIWPN---GGRRVSLSGSFT---RWSE--PMPMSPSEG--CPAVFQIICRLPPG-HHQYKFYV   76 (323)
Q Consensus        20 ~~~v~F~w~~---~~~~V~l~Gsf~---~W~~--~~~m~~~~~--~~g~~~~~~~LppG-~y~YkFiV   76 (323)
                      .+.|+|....   .+++|+|+||..   +|++  .++|...++  ....|++++.||.| .++|||++
T Consensus         1 ~v~V~F~v~~~~~~ge~v~i~Gs~~~LG~W~~~~a~~l~~~~~~~~~~~W~~~v~lp~~~~~eYKy~i   68 (96)
T PF00686_consen    1 QVSVTFRVNYQTQPGESVYIVGSCPELGNWDPKKAVPLQWNEGTENYPIWSATVDLPAGTPFEYKYVI   68 (96)
T ss_dssp             EEEEEEEESE---TTEEEEEEESSGGGTTTSGGGSBESEBESSSSTTTSEEEEEEEETTSEEEEEEEE
T ss_pred             CEEEEEEEEeECCCCCEEEEEECcHHhCCCChHhccccccccCCCCCCeEEEEEECcCCCEEEEEEEE
Confidence            3788999953   489999999998   7997  468887532  35799999999998 59999999

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain binds to starch, and is found often at the C terminus of a variety of glycosyl hydrolases acting on polysaccharides more rapidly than on oligosaccharides. Reations include: the hydrolysis of terminal 1,4-linked alpha-D-glucose residues successively from non-reducing ends of the chains with release of beta-D-glucose, the degradation of starch to cyclodextrins by formation of a 1,4-alpha-D-glucosidic bond, and hydrolysis of 1,4-alpha-glucosidic linkages in polysaccharides to remove successive maltose units from the non-reducing ends of the chains.; GO: 0003824 catalytic activity, 0005975 carbohydrate metabolic process; PDB: 1KUL_A 1ACZ_A 1AC0_A 1KUM_A 2Z0B_C 9CGT_A 3CGT_A 6CGT_A 4CGT_A 1CGT_A ....

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=97.91  E-value=2e-05  Score=79.39  Aligned_cols=59  Identities=17%  Similarity=0.308  Sum_probs=53.2

Q ss_pred             ccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHH
Q 020637          154 THTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILI  213 (323)
Q Consensus       154 ~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~  213 (323)
                      ..++.++|..+.+++++++++++.+|+++|.++++..+||+|. .++++|+||..|+++.
T Consensus       160 ~~~V~dIMt~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~-~g~LvGIIT~~Dilk~  218 (502)
T PRK07107        160 DTKVKDFMTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVDK-NGNLVYLVFRKDYDSH  218 (502)
T ss_pred             CCCHHHHhCCCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEcC-CCeEEEEEEhHHHHhc
Confidence            4678899965568999999999999999999999999999995 6899999999999864

>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]

Probab=97.90  E-value=5.7e-05  Score=77.38  Aligned_cols=165  Identities=19%  Similarity=0.261  Sum_probs=95.1

Q ss_pred             eeEEEEE-eeCCCceEEEEeccCCCCCC-CCCCCCCCCCCeEEEEEE-eCCceEEEEEEEcCe-----eecCCCCCeeeC
Q 020637           20 LVPVRFI-WPNGGRRVSLSGSFTRWSEP-MPMSPSEGCPAVFQIICR-LPPGHHQYKFYVDGE-----WRHDENQPHVSG   91 (323)
Q Consensus        20 ~~~v~F~-w~~~~~~V~l~Gsf~~W~~~-~~m~~~~~~~g~~~~~~~-LppG~y~YkFiVDG~-----w~~d~~~p~~~d   91 (323)
                      ...++|+ |.+.++.|.|.|+||+|... .+|.... ..|.|+++++ +++| +.|||.+++.     ++.||..-....
T Consensus        35 ~~~~~F~vWAP~a~~V~vvgdfn~w~~~~~~~~~~~-~~G~we~~vp~~~~G-~~Yky~l~~~~g~~~~~~DP~a~~~~~  112 (628)
T COG0296          35 VSGVRFRVWAPNARRVSLVGDFNDWDGRRMPMRDRK-ESGIWELFVPGAPPG-TRYKYELIDPSGQLRLKADPYARRQEV  112 (628)
T ss_pred             CCceEEEEECCCCCeEEEEeecCCccceecccccCC-CCceEEEeccCCCCC-CeEEEEEeCCCCceeeccCchhhccCC
Confidence            3457776 57789999999999999873 4555432 4799999999 9999 9999999653     356665443332


Q ss_pred             CCCccceEEEecCCCCCCCC----CCCCCCCCCCchh-hhhcCCCCCCC---CCHHHHHHHHHhhhhhccccccccccCC
Q 020637           92 NYGVVNCVYIAVPQPDMVPN----TISPETSGNMEVD-DVVMRPEGFAQ---YSEADLQLSRDRISSFLSTHTVYELLPD  163 (323)
Q Consensus        92 ~~G~~nnvl~v~~~~~~~p~----~~~~~~~~~~dl~-~~~~~~~~~~~---~s~~~l~~~~~~~~~~l~~~~~~dvmp~  163 (323)
                      .-++..  +.+ ..+++.=.    -.+...+-..++. =++|- +.+-+   .+-.++..++-+|-.-|+ .||-++||.
T Consensus       113 ~p~~aS--~v~-~~~~y~W~d~~~~~~~~~~~~e~~vIYElHv-Gs~~~~~~~~~~e~a~~llpYl~elG-~T~IELMPv  187 (628)
T COG0296         113 GPHTAS--QVV-DLPDYEWQDERWDRAWRGRFWEPIVIYELHV-GSFTPDRFLGYFELAIELLPYLKELG-ITHIELMPV  187 (628)
T ss_pred             CCCCcc--eec-CCCCcccccccccccccCCCCCCceEEEEEe-eeccCCCCcCHHHHHHHHhHHHHHhC-CCEEEEccc
Confidence            222221  222 22222111    0000000011111 11111 22222   455777777778888886 999999996


Q ss_pred             CCCeE----------------EEecchhHHHHHHHHHHCCCCee
Q 020637          164 SGKVT----------------ALDVNLAVKQAFHVLYEQGLPMV  191 (323)
Q Consensus       164 s~~vv----------------~vd~~~~v~~A~~~l~~~~i~~l  191 (323)
                      +.=.-                ...+-.-++.-+..+.++||.-+
T Consensus       188 ~e~p~~~sWGYq~~g~yAp~sryGtPedfk~fVD~aH~~GIgVi  231 (628)
T COG0296         188 AEHPGDRSWGYQGTGYYAPTSRYGTPEDFKALVDAAHQAGIGVI  231 (628)
T ss_pred             ccCCCCCCCCCCcceeccccccCCCHHHHHHHHHHHHHcCCEEE
Confidence            53110                11222346777777778888543

>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.89  E-value=1.9e-05  Score=64.00  Aligned_cols=60  Identities=23%  Similarity=0.263  Sum_probs=46.9

Q ss_pred             cccccccccCCCCCeEEEe----cchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHH
Q 020637          153 STHTVYELLPDSGKVTALD----VNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL  212 (323)
Q Consensus       153 ~~~~~~dvmp~s~~vv~vd----~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~  212 (323)
                      ...++.++|.....++.++    +++++.+|++.|.++++..+||+|++.++++|+||.+|+++
T Consensus        62 ~~~~v~~im~~~~~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~di~~  125 (126)
T cd04640          62 SELTVADVMTPKEDLKALDLEELENASVGDVVETLKASGRQHALVVDREHHQIRGIISTSDIAR  125 (126)
T ss_pred             hheEHHHhcCchhhhccccHHHhccCcHHHHHHHHHHCCCceEEEEECCCCEEEEEEeHHHHhh
Confidence            3466888994333334444    57899999999999999999999952269999999999853

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE

Probab=97.88  E-value=2.3e-05  Score=61.50  Aligned_cols=56  Identities=20%  Similarity=0.401  Sum_probs=48.7

Q ss_pred             cccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHH
Q 020637          155 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILI  213 (323)
Q Consensus       155 ~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~  213 (323)
                      .+|.++|  ...++++..++++.+|++.|.+++...+||+|+ .++++|+||..|+++.
T Consensus        53 ~~v~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~-~~~~~Gvit~~dll~~  108 (109)
T cd04606          53 TPVSDIM--DTDVISVSADDDQEEVARLFEKYDLLALPVVDE-EGRLVGIITVDDVIDV  108 (109)
T ss_pred             chHHHHh--CCCCeEEcCCCCHHHHHHHHHHcCCceeeeECC-CCcEEEEEEhHHhhhh
Confidence            4577777  356899999999999999999999999999985 6899999999999753

MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=97.86  E-value=6e-05  Score=75.63  Aligned_cols=58  Identities=24%  Similarity=0.398  Sum_probs=52.0

Q ss_pred             cccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHH
Q 020637          155 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR  215 (323)
Q Consensus       155 ~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~  215 (323)
                      ..+.|+|  ...++++.+++++.+|+++|.++++..+||+|+ +++++|+||.+|+++...
T Consensus       148 ~~V~diM--t~~~itV~~d~sL~eAl~lM~~~~i~~LPVVD~-~g~lvGIIT~~DIl~~~~  205 (479)
T PRK07807        148 TQVRDVM--STDLVTLPAGTDPREAFDLLEAARVKLAPVVDA-DGRLVGVLTRTGALRATI  205 (479)
T ss_pred             CCHHHhc--cCCceEECCCCcHHHHHHHHHhcCCCEEEEEcC-CCeEEEEEEHHHHHHHhh
Confidence            4588899  478999999999999999999999999999995 689999999999977554

>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

Probab=97.85  E-value=2.4e-05  Score=64.02  Aligned_cols=56  Identities=20%  Similarity=0.389  Sum_probs=50.1

Q ss_pred             cccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHH
Q 020637          153 STHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL  212 (323)
Q Consensus       153 ~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~  212 (323)
                      ...++.++|  ..+++++.+++++.+|+++|.+++...+||+|  .|+++|+||..|+++
T Consensus        79 ~~~~v~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd--~g~~~Gvit~~di~~  134 (135)
T cd04586          79 HGRKVADVM--TRPVVTVGEDTPLAEVAELMEEHRIKRVPVVR--GGRLVGIVSRADLLR  134 (135)
T ss_pred             cCCCHHHHh--CCCceEeCCCCcHHHHHHHHHHcCCCccCEec--CCEEEEEEEhHhhhc
Confidence            456788999  46789999999999999999999999999998  489999999999863

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>smart00116 CBS Domain in cystathionine beta-synthase and other proteins

Probab=97.84  E-value=5e-05  Score=49.49  Aligned_cols=47  Identities=30%  Similarity=0.610  Sum_probs=41.5

Q ss_pred             eEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHH
Q 020637          167 VTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILIL  214 (323)
Q Consensus       167 vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l  214 (323)
                      .++++++.++.++.+.|.++++..+||+++ +++++|+++..|++..+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~g~i~~~~l~~~~   48 (49)
T smart00116        2 VVTVSPDTTLEEALELLREHGIRRLPVVDE-EGRLVGIVTRRDIIKAL   48 (49)
T ss_pred             ceEecCCCcHHHHHHHHHHhCCCcccEECC-CCeEEEEEEHHHHHHhh
Confidence            467888999999999999999999999995 58999999999986543

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.

>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=97.84  E-value=3.4e-05  Score=60.46  Aligned_cols=55  Identities=31%  Similarity=0.547  Sum_probs=49.2

Q ss_pred             ccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHH
Q 020637          154 THTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL  212 (323)
Q Consensus       154 ~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~  212 (323)
                      ..+|.++|  ..+++++++++++.+|++.|.+++...+||+|.  ++++|++|..|+++
T Consensus        56 ~~~i~~~~--~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~--~~~~Giit~~di~~  110 (111)
T cd04800          56 DTPVSEVM--TAPPITIPPDATVFEALLLMLERGIHHLPVVDD--GRLVGVISATDLLR  110 (111)
T ss_pred             cCCHHHHh--CCCCeEECCCCcHHHHHHHHHHcCCCeeeEeEC--CEEEEEEEHHHhhc
Confidence            35688888  467899999999999999999999999999984  79999999999863

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa

>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

Probab=97.84  E-value=3.8e-05  Score=60.23  Aligned_cols=55  Identities=18%  Similarity=0.429  Sum_probs=49.2

Q ss_pred             cccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHH
Q 020637          153 STHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFI  211 (323)
Q Consensus       153 ~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i  211 (323)
                      ...+|.++|.  ...+++..++++.+|+++|.+++...+||+|  +++++|+||..|++
T Consensus        54 ~~~~~~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~--~~~~~Gvvt~~di~  108 (110)
T cd04595          54 GHAPVKDYMS--TDVVTVPPDTPLSEVQELMVEHDIGRVPVVE--DGRLVGIVTRTDLL  108 (110)
T ss_pred             ccCcHHHHhc--CCCEEECCCCcHHHHHHHHHHcCCCeeEEEe--CCEEEEEEEhHHhh
Confidence            4567888984  5788999999999999999999999999998  57999999999986

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

Probab=97.84  E-value=3.1e-05  Score=61.96  Aligned_cols=57  Identities=23%  Similarity=0.422  Sum_probs=49.9

Q ss_pred             cccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHH
Q 020637          153 STHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL  212 (323)
Q Consensus       153 ~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~  212 (323)
                      ...++.++|.  ..++++.+++++.+|+++|.++++..+||+|+ .|+++|++|..|++.
T Consensus        67 ~~~~i~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~-~g~~~Gvit~~di~~  123 (124)
T cd04600          67 KPETVGDIMS--PPVVTVRPDTPIAELVPLLADGGHHHVPVVDE-DRRLVGIVTQTDLIA  123 (124)
T ss_pred             ccccHHHhcc--CCCeeeCCCCcHHHHHHHHHhcCCCceeEEcC-CCCEEEEEEhHHhhc
Confidence            3446778884  57899999999999999999999999999995 789999999999863

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=97.83  E-value=4e-05  Score=59.60  Aligned_cols=54  Identities=13%  Similarity=0.257  Sum_probs=46.9

Q ss_pred             ccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHH
Q 020637          156 TVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL  212 (323)
Q Consensus       156 ~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~  212 (323)
                      ++.++|.  ....+++.++++.+|+++|.++++..+||+|. .++++|+||..|+++
T Consensus        52 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~~-~~~~~Gvi~~~~l~~  105 (106)
T cd04582          52 CCGDHAE--PFKVTVSVDDDLRIVLSRMFAHDMSWLPCVDE-DGRYVGEVTQRSIAD  105 (106)
T ss_pred             chhhhcc--cCCEEECCCCCHHHHHHHHHHCCCCeeeEECC-CCcEEEEEEHHHhhc
Confidence            4677773  45678999999999999999999999999985 689999999999863

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi

>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.83  E-value=3.7e-05  Score=60.39  Aligned_cols=54  Identities=20%  Similarity=0.479  Sum_probs=48.4

Q ss_pred             ccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHH
Q 020637          154 THTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFI  211 (323)
Q Consensus       154 ~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i  211 (323)
                      ..++.++|  ...++++.+++++.+|++.|.++++..+||+|+  ++++|+||..|++
T Consensus        56 ~~~v~~~~--~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~--~~~~G~it~~di~  109 (111)
T cd04626          56 EKKVFNIV--SQDVFYVNEEDTIDEALDIMREKQIGRLPVVDD--NKLIGVVRTKDIL  109 (111)
T ss_pred             cCcHHHHh--cCCcEEEcCCCcHHHHHHHHHHcCCCeeeEeEC--CEEEEEEEhHHhc
Confidence            45688888  467889999999999999999999999999984  7999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK10892 D-arabinose 5-phosphate isomerase; Provisional

Probab=97.82  E-value=3.2e-05  Score=73.65  Aligned_cols=55  Identities=13%  Similarity=0.247  Sum_probs=50.0

Q ss_pred             ccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHH
Q 020637          154 THTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL  212 (323)
Q Consensus       154 ~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~  212 (323)
                      ..++.|+|  +.+++++++++++.+|+++|.+++++.+||+|  .++++||||.+|+++
T Consensus       268 ~~~v~~im--~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~--~~~lvGiit~~dil~  322 (326)
T PRK10892        268 QASIADVM--TPGGIRVRPGILAVDALNLMQSRHITSVLVAD--GDHLLGVLHMHDLLR  322 (326)
T ss_pred             cCCHHHhc--CCCCEEECCCCCHHHHHHHHHHCCCcEEEEee--CCEEEEEEEhHHhHh
Confidence            46799999  46899999999999999999999999999997  469999999999964

>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.82  E-value=3.5e-05  Score=60.64  Aligned_cols=55  Identities=20%  Similarity=0.353  Sum_probs=48.3

Q ss_pred             ccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHH
Q 020637          154 THTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL  212 (323)
Q Consensus       154 ~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~  212 (323)
                      ...+.++|  ..+.+++..++++.+|++.|.+++...+||+|.  |+++|+||..|+++
T Consensus        59 ~~~v~~~~--~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~--~~~~Gvit~~di~~  113 (114)
T cd04629          59 VATVRDIM--TTEVLTVSPDDSIVDLAQLMLKAKPKRYPVVDD--GKLVGQISRRDVLR  113 (114)
T ss_pred             CccHHHHh--ccCceEECCCCcHHHHHHHHHHhCCCccCEEEC--CEEEEEEEHHHHhc
Confidence            34577888  457889999999999999999999999999994  79999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd02860 Pullulanase_N_term Pullulanase domain N-terminus

Probab=97.81  E-value=6.4e-05  Score=59.25  Aligned_cols=64  Identities=20%  Similarity=0.219  Sum_probs=48.4

Q ss_pred             EEEE-eeCCCceEEEEeccCCCC-----CCCCCCCCCCCCCeEEEEEE-eCCceEEEEEEEcCe-----eecCCCCCeee
Q 020637           23 VRFI-WPNGGRRVSLSGSFTRWS-----EPMPMSPSEGCPAVFQIICR-LPPGHHQYKFYVDGE-----WRHDENQPHVS   90 (323)
Q Consensus        23 v~F~-w~~~~~~V~l~Gsf~~W~-----~~~~m~~~~~~~g~~~~~~~-LppG~y~YkFiVDG~-----w~~d~~~p~~~   90 (323)
                      ++|+ |.+.|++|.|.. |++|.     ..++|.+..  +|.|++.+. +.+|. .|+|.|+|.     ...||....+.
T Consensus        10 ~~F~vwAP~A~~V~L~l-~~~~~~~~~~~~~~m~~~~--~gvw~~~v~~~~~g~-~Y~y~i~~~~~~~~~~~DPyA~~~~   85 (100)
T cd02860          10 TTFRLWAPTAQSVKLLL-YDKDDQDKVLETVQMKRGE--NGVWSVTLDGDLEGY-YYLYEVKVYKGETNEVVDPYAKALS   85 (100)
T ss_pred             EEEEEECCCCcEEEEEE-EcCCCCCCcceeEeeecCC--CCEEEEEeCCccCCc-EEEEEEEEeceEEEEEcCcccEeEe
Confidence            6775 467799999988 88886     346898744  799999987 55565 488888775     67888776655

Pullulanase (AKA dextrinase; alpha-dextrin endo-1,6-alpha glucosidase) is an enzyme with action similar to that of isoamylase; it cleaves 1,6-alpha-glucosidic linkages in pullulan, amylopectin, and glycogen, and in alpha-and beta-amylase limit-dextrins of amylopectin and glycogen. The N-terminus of pullulanase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.

>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.81  E-value=4.7e-05  Score=62.06  Aligned_cols=55  Identities=25%  Similarity=0.500  Sum_probs=48.8

Q ss_pred             ccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHH
Q 020637          154 THTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL  212 (323)
Q Consensus       154 ~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~  212 (323)
                      ..++.++|.  ..++.++.++++.+|+++|.+++...+||+|+  ++++|++|..|+++
T Consensus        77 ~~~v~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~--~~~iGvit~~dl~~  131 (132)
T cd04636          77 GKKVEEIMT--KKVITVDEDTTIEDVARIMSKKNIKRLPVVDD--GKLVGIISRGDIIR  131 (132)
T ss_pred             CCCHHHhcc--CCceEECCCCcHHHHHHHHHHCCCCeeEEEEC--CEEEEEEEHHHhhc
Confidence            347888884  56889999999999999999999999999994  89999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.81  E-value=4.1e-05  Score=61.01  Aligned_cols=56  Identities=20%  Similarity=0.456  Sum_probs=49.2

Q ss_pred             cccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHH
Q 020637          153 STHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL  212 (323)
Q Consensus       153 ~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~  212 (323)
                      ...++.++|  ....+++.+++++.+|+++|.++++..+||+|.  ++++|+||..|+++
T Consensus        65 ~~~~~~~~~--~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~--~~~~Gvi~~~dl~~  120 (121)
T cd04633          65 RNLPVSDIM--TRPVITIEPDTSVSDVASLMLENNIGGLPVVDD--GKLVGIVTRTDILR  120 (121)
T ss_pred             hccCHHHHc--cCCceEECCCCcHHHHHHHHHHcCCCcccEEEC--CEEEEEEEHHHhhc
Confidence            445778888  357889999999999999999999999999984  79999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.80  E-value=5e-05  Score=62.75  Aligned_cols=57  Identities=18%  Similarity=0.296  Sum_probs=50.0

Q ss_pred             ccccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHH
Q 020637          152 LSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL  212 (323)
Q Consensus       152 l~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~  212 (323)
                      +...++.++|.  .+++++.+++++.+|++.|.++++..+||+|+  ++++|+||.+|+++
T Consensus        78 ~~~~~v~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~--~~~~Gvit~~di~~  134 (135)
T cd04621          78 EVPLVAEDIMT--EEIITVSPNDDVVDAAKLMLEANISGLPVVDN--DNIVGVITKTDICR  134 (135)
T ss_pred             cccccHHHhcC--CCCeEECCCCCHHHHHHHHHHcCCCEEEEEeC--CEEEEEEEHHHHhh
Confidence            34567889994  57889999999999999999999999999984  79999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=97.79  E-value=4.6e-05  Score=60.41  Aligned_cols=57  Identities=23%  Similarity=0.464  Sum_probs=50.1

Q ss_pred             cccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHH
Q 020637          153 STHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL  212 (323)
Q Consensus       153 ~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~  212 (323)
                      ...++.++|.  ..+++++.++++.++++.|.+++...+||+|+ .|+++|+||..|+++
T Consensus        65 ~~~~~~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~~Gvvt~~di~~  121 (122)
T cd04585          65 SKIKVSDIMT--RDPITVSPDASVEEAAELMLERKISGLPVVDD-QGRLVGIITESDLFR  121 (122)
T ss_pred             cccCHHHhcc--CCCeEeCCCCcHHHHHHHHHHcCCCceeEECC-CCcEEEEEEHHHhhh
Confidence            4567888884  56899999999999999999999999999984 689999999999864

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i

>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

Probab=97.79  E-value=4.8e-05  Score=60.23  Aligned_cols=55  Identities=20%  Similarity=0.359  Sum_probs=47.8

Q ss_pred             ccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCC-CeEEEEEehHHHHH
Q 020637          156 TVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFK-GRFVGVLSALDFIL  212 (323)
Q Consensus       156 ~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~-~~~vGilT~~D~i~  212 (323)
                      .+.++|.  ..++++..++++.+|+++|.+++...+||+|+.. |+++|+||.+|++.
T Consensus        59 ~~~~~~~--~~~~~v~~~~~l~~~l~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di~~  114 (115)
T cd04593          59 AVDEVAT--PPLLTVHPDEPLAHALDRMASRGLRQLPVVDRGNPGQVLGLLTRENVLL  114 (115)
T ss_pred             cHHHhcc--CCceEECCCCCHHHHHHHHHHcCCceeeEEeCCCCCeEEEEEEhHHhhc
Confidence            3677774  5788999999999999999999999999998531 79999999999864

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d

>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream

Probab=97.79  E-value=4.7e-05  Score=59.18  Aligned_cols=55  Identities=24%  Similarity=0.480  Sum_probs=48.2

Q ss_pred             cccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHH
Q 020637          155 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL  212 (323)
Q Consensus       155 ~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~  212 (323)
                      ..+.++|  ...+.++..++++.+|++.|.+++...+||+|+ .|+++|++|..|+++
T Consensus        52 ~~~~~~~--~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~g~~~Gvi~~~di~~  106 (107)
T cd04610          52 ETVEEIM--SKDLVVAVPEMDIMDAARVMFRTGISKLPVVDE-NNNLVGIITNTDVIR  106 (107)
T ss_pred             ccHHHhC--CCCCeEECCCCCHHHHHHHHHHhCCCeEeEECC-CCeEEEEEEHHHhhc
Confidence            3577888  356788999999999999999999999999995 689999999999863

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=97.79  E-value=6.3e-05  Score=58.22  Aligned_cols=53  Identities=13%  Similarity=0.315  Sum_probs=47.2

Q ss_pred             cccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHH
Q 020637          155 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFI  211 (323)
Q Consensus       155 ~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i  211 (323)
                      ..|.++|  ...+.+++.++++.+|++.|.+++...+||+|+  ++++|+||..|++
T Consensus        51 ~~~~~~~--~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~--~~~~G~it~~~l~  103 (105)
T cd04599          51 RLVADAM--TREVVTISPEASLLEAKRLMEEKKIERLPVLRE--RKLVGIITKGTIA  103 (105)
T ss_pred             CCHHHHc--cCCCEEECCCCCHHHHHHHHHHcCCCEeeEEEC--CEEEEEEEHHHhc
Confidence            3577788  457889999999999999999999999999984  8999999999985

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>COG0517 FOG: CBS domain [General function prediction only]

Probab=97.78  E-value=4.7e-05  Score=60.10  Aligned_cols=52  Identities=25%  Similarity=0.551  Sum_probs=46.9

Q ss_pred             ccccccCCCCCeEEEecchhHHHHHHHHHH-CCCCeeeeEeCCCC-eEEEEEehHHH
Q 020637          156 TVYELLPDSGKVTALDVNLAVKQAFHVLYE-QGLPMVPLWDDFKG-RFVGVLSALDF  210 (323)
Q Consensus       156 ~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~-~~i~~lPV~d~~~~-~~vGilT~~D~  210 (323)
                      .+.++|  +..++++.++.++.+|+++|.+ ++++++||+|. ++ +++|++|.+|+
T Consensus        63 ~v~~v~--~~~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~-~~~~lvGivt~~di  116 (117)
T COG0517          63 PVKEVM--TKPVVTVDPDTPLEEALELMVERHKIRRLPVVDD-DGGKLVGIITLSDI  116 (117)
T ss_pred             cHHHhc--cCCcEEECCCCCHHHHHHHHHHHcCcCeEEEEEC-CCCeEEEEEEHHHc
Confidence            577888  4589999999999999999999 79999999995 54 99999999997

>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.78  E-value=4.5e-05  Score=60.88  Aligned_cols=57  Identities=18%  Similarity=0.384  Sum_probs=50.0

Q ss_pred             cccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHH
Q 020637          153 STHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL  212 (323)
Q Consensus       153 ~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~  212 (323)
                      ...+|.++|.  .++++++.++++.+|++.|.++++..+||+|+ .|+++|++|..|+++
T Consensus        65 ~~~~~~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~g~~~Gvit~~dl~~  121 (122)
T cd04635          65 ASPTVEKIMS--TPVYSVTPDDSIATAVELMLEHDIGRLPVVNE-KDQLVGIVDRHDVLK  121 (122)
T ss_pred             ccCcHHHHhc--CCCeeECCCCCHHHHHHHHHHcCCCeeeEEcC-CCcEEEEEEhHHhhc
Confidence            3456788884  57899999999999999999999999999985 689999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes

Probab=97.76  E-value=4.7e-05  Score=63.12  Aligned_cols=47  Identities=23%  Similarity=0.319  Sum_probs=43.1

Q ss_pred             CcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (323)
Q Consensus       260 ~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~  312 (323)
                      .++++.+++++.+|+..|.++++.++||+|+  + |   +++|+||..|++++
T Consensus         2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~--~-g---~l~Givt~~Dl~~~   48 (133)
T cd04592           2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDS--D-D---FLEGILTLGDIQRF   48 (133)
T ss_pred             CceEECCCCCHHHHHHHHHHcCCCEEEEECC--C-C---eEEEEEEHHHHHHH
Confidence            4689999999999999999999999999985  3 5   79999999999987

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually

>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=97.76  E-value=5.1e-05  Score=60.15  Aligned_cols=54  Identities=17%  Similarity=0.317  Sum_probs=45.2

Q ss_pred             ccccccCCCCCeEEEec--chhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHH
Q 020637          156 TVYELLPDSGKVTALDV--NLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL  212 (323)
Q Consensus       156 ~~~dvmp~s~~vv~vd~--~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~  212 (323)
                      .+.++|.  ....++..  ++++.+|+++|.++++..+||+|+ .++++|+||..|++.
T Consensus        58 ~v~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~~-~~~~~Gvit~~di~~  113 (114)
T cd04602          58 PLSEVMT--PREVLVVAPTGITLEEANEILRESKKGKLPIVND-DGELVALVTRSDLKK  113 (114)
T ss_pred             CHHHhcC--CCceEEECCCCCCHHHHHHHHHhcCCCceeEECC-CCeEEEEEEHHHhhc
Confidence            4678884  44555655  999999999999999999999984 689999999999863

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos

>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=97.75  E-value=5.5e-05  Score=59.29  Aligned_cols=55  Identities=16%  Similarity=0.332  Sum_probs=49.2

Q ss_pred             cccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHH
Q 020637          155 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFI  211 (323)
Q Consensus       155 ~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i  211 (323)
                      .+|.++|  ..++.++++++++.+|++.|.+++...+||+|...++++|++|..|++
T Consensus        58 ~~v~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~  112 (114)
T cd04613          58 VVASDIM--TKPPVVVYPEDSLEDALKKFEDSDYEQLPVVDDDPGKLLGILSRSDLL  112 (114)
T ss_pred             EEHHHhc--cCCCcEEcCCCCHHHHHHHHhhCCccEeeEEeCCCCEEEEEEEhHHhh
Confidence            6788888  567899999999999999999999999999983157999999999985

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a

>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

Probab=97.75  E-value=4.6e-05  Score=59.74  Aligned_cols=52  Identities=13%  Similarity=0.201  Sum_probs=45.7

Q ss_pred             ccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHH
Q 020637          156 TVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFI  211 (323)
Q Consensus       156 ~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i  211 (323)
                      .+.++|   ..+.++..++++.+|+++|.+++...+||+|. .|+++|+||.+|++
T Consensus        58 ~~~~~~---~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~~Gvit~~di~  109 (111)
T cd04590          58 DLRDLL---RPPLFVPESTPLDDLLEEMRKERSHMAIVVDE-YGGTAGLVTLEDIL  109 (111)
T ss_pred             CHHHHh---cCCeecCCCCcHHHHHHHHHhcCCcEEEEEEC-CCCEEEEeEHHHhh
Confidence            455655   35788999999999999999999999999995 68999999999985

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,

>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.75  E-value=4.7e-05  Score=61.02  Aligned_cols=55  Identities=22%  Similarity=0.462  Sum_probs=48.6

Q ss_pred             cccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHH
Q 020637          155 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL  212 (323)
Q Consensus       155 ~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~  212 (323)
                      .++.++|.  ..+++++.++++.+|++.|.+++...+||+|+ .++++|+||..|+++
T Consensus        70 ~~~~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~~~Gvit~~di~~  124 (125)
T cd04631          70 EPVRSIMT--RNVITITPDDSIKDAAELMLEKRVGGLPVVDD-DGKLVGIVTERDLLK  124 (125)
T ss_pred             cCHHHHhc--CCceEeCCCCcHHHHHHHHHHcCCceEEEEcC-CCcEEEEEEHHHhhc
Confidence            46777873  57899999999999999999999999999984 589999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=97.74  E-value=6e-05  Score=58.66  Aligned_cols=54  Identities=15%  Similarity=0.470  Sum_probs=48.1

Q ss_pred             cccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHH
Q 020637          155 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFI  211 (323)
Q Consensus       155 ~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i  211 (323)
                      ..+.++|.  ..+.+++.++++.+|++.|.+++...+||+|+ +|+++|++|.+|++
T Consensus        54 ~~v~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~vv~~-~g~~~Gvit~~~l~  107 (109)
T cd04583          54 KSLEDIML--EDVFTVQPDASLRDVLGLVLKRGPKYVPVVDE-DGKLVGLITRSSLV  107 (109)
T ss_pred             CcHhHhhc--CCceEECCCCcHHHHHHHHHHcCCceeeEECC-CCeEEEEEehHHhh
Confidence            35778884  57889999999999999999999999999995 68999999999985

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz

>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=97.74  E-value=5.9e-05  Score=58.81  Aligned_cols=55  Identities=22%  Similarity=0.400  Sum_probs=45.9

Q ss_pred             cccccccCCCCCeEEEec-chhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHH
Q 020637          155 HTVYELLPDSGKVTALDV-NLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL  212 (323)
Q Consensus       155 ~~~~dvmp~s~~vv~vd~-~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~  212 (323)
                      .++.++|.  ...+.+.. ++++.+|+++|.+++...+||+|+ .++++|+||.+|++.
T Consensus        54 ~~v~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~~Gvi~~~dil~  109 (110)
T cd04601          54 KPVSEVMT--PENLLTTVEGTSLEEALELLHEHKIEKLPVVDD-EGKLKGLITVKDIEK  109 (110)
T ss_pred             CCHHHhcc--cCceEEecCCCCHHHHHHHHHHhCCCeeeEEcC-CCCEEEEEEhhhhhc
Confidence            45677774  34556666 999999999999999999999985 689999999999863

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.

>smart00116 CBS Domain in cystathionine beta-synthase and other proteins

Probab=97.73  E-value=6.1e-05  Score=49.09  Aligned_cols=46  Identities=20%  Similarity=0.436  Sum_probs=40.8

Q ss_pred             cEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637          261 LVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (323)
Q Consensus       261 ~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~  312 (323)
                      ++++.+++++.+++..|.+++++++||+++  + +   +++|+++..++++.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~-~---~~~g~i~~~~l~~~   47 (49)
T smart00116        2 VVTVSPDTTLEEALELLREHGIRRLPVVDE--E-G---RLVGIVTRRDIIKA   47 (49)
T ss_pred             ceEecCCCcHHHHHHHHHHhCCCcccEECC--C-C---eEEEEEEHHHHHHh
Confidence            578899999999999999999999999985  2 4   79999999998764

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.

>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.72  E-value=5.6e-05  Score=59.24  Aligned_cols=54  Identities=19%  Similarity=0.389  Sum_probs=48.2

Q ss_pred             cccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHH
Q 020637          155 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFI  211 (323)
Q Consensus       155 ~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i  211 (323)
                      ..+.++|.  ..+++++.+.++.+|+++|.+++...+||+|+ .++++|++|..|++
T Consensus        56 ~~v~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~-~~~~~G~it~~dl~  109 (111)
T cd04639          56 APVRGVMR--RDFPTVSPSATLDAVLRLMQQGGAPAVPVVDG-SGRLVGLVTLENVG  109 (111)
T ss_pred             CcHHHHhc--CCCcEECCCCcHHHHHHHHHhcCCceeeEEcC-CCCEEEEEEHHHhh
Confidence            46788884  57889999999999999999999999999985 58999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=97.71  E-value=7.6e-05  Score=58.28  Aligned_cols=55  Identities=22%  Similarity=0.410  Sum_probs=48.7

Q ss_pred             cccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHH
Q 020637          155 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL  212 (323)
Q Consensus       155 ~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~  212 (323)
                      ..+.++|  ...+.+++.++++.+|++.|.+++...+||+|. .++++|+||..|+++
T Consensus        56 ~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~~G~it~~di~~  110 (111)
T cd04612          56 VLVGDVM--TRDPVTASPDETLRDALKRMAERDIGRLPVVDD-SGRLVGIVSRSDLLR  110 (111)
T ss_pred             cCHHHhc--cCCCeEECCCCCHHHHHHHHHhCCCCeeeEEcC-CCCEEEEEEHHHhhh
Confidence            3577777  467899999999999999999999999999985 689999999999863

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an

>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

Probab=97.71  E-value=9.2e-05  Score=57.79  Aligned_cols=57  Identities=23%  Similarity=0.401  Sum_probs=49.9

Q ss_pred             cccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHH
Q 020637          153 STHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL  212 (323)
Q Consensus       153 ~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~  212 (323)
                      ....|.++|  ...++++..+.++.+|++.|.+++...+||+|. .|+++|+||.+|+++
T Consensus        54 ~~~~v~~~~--~~~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~~-~~~~~Gvi~~~di~~  110 (111)
T cd04611          54 LQTPVGEVM--SSPLLTVPADTSLYDARQLMREHGIRHLVVVDD-DGELLGLLSQTDLLQ  110 (111)
T ss_pred             CCcCHHHhc--CCCceEECCCCCHHHHHHHHHHcCCeEEEEECC-CCcEEEEEEhHHhhc
Confidence            346688888  457899999999999999999999999999985 689999999999863

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB

>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.70  E-value=7.5e-05  Score=59.55  Aligned_cols=57  Identities=25%  Similarity=0.482  Sum_probs=49.6

Q ss_pred             cccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHH
Q 020637          153 STHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL  212 (323)
Q Consensus       153 ~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~  212 (323)
                      ...++.++|  ...+++++.++++.+|++.|.+++...+||+|+ .++++|++|..|++.
T Consensus        65 ~~~~v~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~-~~~~~Gvit~~dl~~  121 (122)
T cd04803          65 RDVPVAEVM--KTDVLTVTPDTPLREAAEIMVENKIGCLPVVDD-KGTLVGIITRSDFLR  121 (122)
T ss_pred             cCcCHHHhh--CCCCeEeCCCCcHHHHHHHHHHcCCCeEEEEcC-CCCEEEEEEHHHhhc
Confidence            455677888  457889999999999999999999999999985 579999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.70  E-value=0.00012  Score=57.43  Aligned_cols=55  Identities=22%  Similarity=0.471  Sum_probs=48.3

Q ss_pred             cccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHH
Q 020637          153 STHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFI  211 (323)
Q Consensus       153 ~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i  211 (323)
                      ...+|.++|.  ..+.++..++++.+|+++|.+++...+||+|+ . +++|++|..|++
T Consensus        56 ~~~~~~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~-~~~Gvi~~~di~  110 (112)
T cd04802          56 REVPVGEVMS--TPLITIDPNASLNEAAKLMAKHGIKRLPVVDD-D-ELVGIVTTTDIV  110 (112)
T ss_pred             ccCCHHHhcC--CCcEEECCCCCHHHHHHHHHHcCCCeeEEeeC-C-EEEEEEEhhhhh
Confidence            3457888884  56889999999999999999999999999985 3 999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

Probab=97.70  E-value=6.9e-05  Score=58.83  Aligned_cols=55  Identities=25%  Similarity=0.450  Sum_probs=48.4

Q ss_pred             cccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHH
Q 020637          155 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL  212 (323)
Q Consensus       155 ~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~  212 (323)
                      .++.++|  .....++.+++++.+|+++|.+++...+||+|+ .++++|+||..|+++
T Consensus        59 ~~v~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~-~~~~iG~it~~di~~  113 (114)
T cd04604          59 LPVADVM--TRNPKTIDPDALAAEALELMEENKITALPVVDD-NGRPVGVLHIHDLLR  113 (114)
T ss_pred             CCHHHhh--ccCCeEECCCCcHHHHHHHHHHcCCCEEEEECC-CCCEEEEEEHHHhhc
Confidence            3577888  356788999999999999999999999999985 689999999999863

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=97.70  E-value=6.9e-05  Score=75.13  Aligned_cols=58  Identities=19%  Similarity=0.318  Sum_probs=52.0

Q ss_pred             cccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHH
Q 020637          155 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR  215 (323)
Q Consensus       155 ~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~  215 (323)
                      ..+.++|  +.+++++.+++++.+|+++|.++++..+||+|+ +++++|+||.+||++...
T Consensus       146 ~~V~dIM--t~~litv~~~~sL~eAl~lM~~~~i~~LPVVD~-~g~LvGIIT~~DLl~~~~  203 (475)
T TIGR01303       146 TQVRDIM--STDLVTAPADTEPRKAFDLLEHAPRDVAPLVDA-DGTLAGILTRTGALRATI  203 (475)
T ss_pred             CCHHHHc--cCCceEeCCCCcHHHHHHHHHHcCCCEEEEEcC-CCeEEEEEEHHHHHHHHh
Confidence            4588899  478999999999999999999999999999995 689999999999987544

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

Probab=97.68  E-value=8.8e-05  Score=58.01  Aligned_cols=53  Identities=15%  Similarity=0.355  Sum_probs=47.3

Q ss_pred             ccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHH
Q 020637          156 TVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFI  211 (323)
Q Consensus       156 ~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i  211 (323)
                      .+.++|  ..++.++..++++.+|+++|.+++...+||+|+ .|+++|+||..|++
T Consensus        56 ~~~~~~--~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~~G~v~~~di~  108 (110)
T cd04605          56 SVEDIM--TRNVITATPDEPIDVAARKMERHNISALPVVDA-ENRVIGIITSEDIS  108 (110)
T ss_pred             CHHHhc--CCCCeEECCCCcHHHHHHHHHHhCCCEEeEECC-CCcEEEEEEHHHhh
Confidence            377777  357889999999999999999999999999985 68999999999985

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=97.68  E-value=7.8e-05  Score=58.31  Aligned_cols=54  Identities=20%  Similarity=0.398  Sum_probs=48.2

Q ss_pred             cccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHH
Q 020637          155 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFI  211 (323)
Q Consensus       155 ~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i  211 (323)
                      .+|.++|.  ..+.++.++.++.+|++.|.++++..+||+|. .++++|+||..|++
T Consensus        55 ~~v~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~~G~i~~~dl~  108 (110)
T cd04588          55 AKVKDVMT--KDVITIDEDEQLYDAIRLMNKHNVGRLIVTDD-EGRPVGIITRTDIL  108 (110)
T ss_pred             cCHHHHhc--CCceEECCCCCHHHHHHHHHhcCCCEEEEECC-CCCEEEEEEhHHhh
Confidence            45777883  68899999999999999999999999999985 58999999999986

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.

>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.67  E-value=7.3e-05  Score=60.41  Aligned_cols=56  Identities=21%  Similarity=0.283  Sum_probs=49.1

Q ss_pred             ccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeC-CCCeEEEEEehHHHH
Q 020637          154 THTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDD-FKGRFVGVLSALDFI  211 (323)
Q Consensus       154 ~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~-~~~~~vGilT~~D~i  211 (323)
                      ...++++|.  .+++++.++.++.+|+++|.++++..+||.+. +.++++|+||..|++
T Consensus        70 ~~~~~~~~~--~~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~  126 (128)
T cd04632          70 DLPVYDAMS--SPVITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVL  126 (128)
T ss_pred             cCcHHHHhc--CCCceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhh
Confidence            456889994  67999999999999999999999999999852 468999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd05818 CBM20_water_dikinase Phosphoglucan water dikinase (also known as alpha-glucan water dikinase), N-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=97.67  E-value=0.00039  Score=54.13  Aligned_cols=54  Identities=24%  Similarity=0.361  Sum_probs=44.6

Q ss_pred             eeEEEEEeeC---CCceEEEEecc---CCCCCCCCCCCCCCCCCeEEEEEEeCCc-eEEEEEEE
Q 020637           20 LVPVRFIWPN---GGRRVSLSGSF---TRWSEPMPMSPSEGCPAVFQIICRLPPG-HHQYKFYV   76 (323)
Q Consensus        20 ~~~v~F~w~~---~~~~V~l~Gsf---~~W~~~~~m~~~~~~~g~~~~~~~LppG-~y~YkFiV   76 (323)
                      ++.++|+.++   -|++++|+|+-   -+|++..+|...   .+.|++.+.+|++ .++|||++
T Consensus         1 ~~~v~F~~~~~~~~Gq~l~v~G~~~~LG~W~~~~~l~~~---~~~W~~~~~l~~~~~ieyKy~~   61 (92)
T cd05818           1 KVKLQVRLDHQVKFGEHVAILGSTKELGSWKKKVPMNWT---ENGWVCDLELDGGELVEYKFVI   61 (92)
T ss_pred             CEEEEEEEEEEcCCCCEEEEEeChHHHCCCCCCCccccC---CCCEEEEEEeCCCCcEEEEEEE
Confidence            3678888875   48999999986   489987788764   4579999999997 59999998

This domain is found in the chloroplast-encoded phosphoglucan water dikinase, one of two enzymes involved in the phosphorylation of plant starches. In addition to the CBM20 domain, phosphoglucan water dikinase contains a C-terminal pyruvate binding domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio

>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional

Probab=97.66  E-value=8.3e-05  Score=70.58  Aligned_cols=55  Identities=22%  Similarity=0.375  Sum_probs=49.5

Q ss_pred             cccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHH
Q 020637          155 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL  212 (323)
Q Consensus       155 ~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~  212 (323)
                      .++.|+|  ...++++.++.++.+|++.|.++++..+||+|+ +++++|+||..|+++
T Consensus       263 ~~v~~im--~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~~~lvGvIt~~di~~  317 (321)
T PRK11543        263 TPVNEAM--TRGGTTLQAQSRAIDAKEILMKRKITAAPVVDE-NGKLTGAINLQDFYQ  317 (321)
T ss_pred             CcHHHhc--CCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcC-CCeEEEEEEHHHHHh
Confidence            4578999  567899999999999999999999999999995 679999999999964

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=97.64  E-value=0.0001  Score=74.52  Aligned_cols=62  Identities=15%  Similarity=0.255  Sum_probs=54.7

Q ss_pred             ccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHh
Q 020637          154 THTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRE  216 (323)
Q Consensus       154 ~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~  216 (323)
                      ..++.++|.....++++.+++++.+|+++|.++++..+||+|+ .++++|+||.+|+++.+.+
T Consensus       162 ~~~V~eIMt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~-~g~LvGvITr~DIlk~~~~  223 (505)
T PLN02274        162 ETKLSEVMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNE-DGELVDLVTRTDVKRVKGY  223 (505)
T ss_pred             CCcHHHHhccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcC-CCeEEEEEEHHHHHHHhhC
Confidence            4568899954444999999999999999999999999999995 6899999999999987765

>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=97.64  E-value=0.00011  Score=57.58  Aligned_cols=56  Identities=21%  Similarity=0.278  Sum_probs=48.9

Q ss_pred             cccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHH
Q 020637          153 STHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL  212 (323)
Q Consensus       153 ~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~  212 (323)
                      ...++.++|  ..++.++.+++++.+++++|.+++...+||+|.  ++++|+||..|++.
T Consensus        55 ~~~~i~~~~--~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~--~~~~G~it~~dl~~  110 (111)
T cd04589          55 SSTPVGEIA--TFPLITVDPDDFLFNALLLMTRHRIHRVVVREG--GEVVGVLEQTDLLS  110 (111)
T ss_pred             CCCCHHHHh--CCCcEEECCCCcHHHHHHHHHHhCccEEEEeeC--CEEEEEEEhHHhhc
Confidence            345688888  357889999999999999999999999999983  79999999999863

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or

>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.63  E-value=9.8e-05  Score=57.94  Aligned_cols=54  Identities=28%  Similarity=0.421  Sum_probs=47.8

Q ss_pred             ccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHH
Q 020637          156 TVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL  212 (323)
Q Consensus       156 ~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~  212 (323)
                      ++.++|.  ....++..++++.+|+++|.+++...+||+|+ .++++|++|..|+++
T Consensus        59 ~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~~G~it~~di~~  112 (113)
T cd04622          59 TVGDVMT--RGVVTVTEDDDVDEAARLMREHQVRRLPVVDD-DGRLVGIVSLGDLAR  112 (113)
T ss_pred             CHHHhcc--CCccEECCCCCHHHHHHHHHHcCCCeeeEECC-CCcEEEEEEHHHhhc
Confidence            4778884  56888999999999999999999999999984 589999999999853

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.62  E-value=0.0001  Score=58.08  Aligned_cols=47  Identities=19%  Similarity=0.327  Sum_probs=42.6

Q ss_pred             CcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (323)
Q Consensus       260 ~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~  312 (323)
                      .++++.+++++.+|+.+|.+++++++||+|+   +|   +++|+++..|++++
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~---~~---~~~Giv~~~dl~~~   48 (116)
T cd04643           2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDK---EG---KYVGTISLTDILWK   48 (116)
T ss_pred             CcEEECCCCcHHHHHHHHHHCCCceeeeECC---CC---cEEEEEeHHHHHHH
Confidence            4689999999999999999999999999985   34   79999999999876

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea

Probab=97.62  E-value=0.00012  Score=57.04  Aligned_cols=53  Identities=15%  Similarity=0.347  Sum_probs=46.5

Q ss_pred             ccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHH
Q 020637          156 TVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL  212 (323)
Q Consensus       156 ~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~  212 (323)
                      ++.++|.  ...++++.+.++.+|++.|.+++...+||+|  +++++|++|..|++.
T Consensus        51 ~~~~~~~--~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~--~~~~iGvit~~dl~~  103 (104)
T cd04594          51 DVVDYIV--RGIPYVRLTSTAEEAWEVMMKNKTRWCPVVD--DGKFKGIVTLDSILD  103 (104)
T ss_pred             chhhhhh--cCCcEEcCCCCHHHHHHHHHHcCcceEEEEE--CCEEEEEEEHHHhhc
Confidence            4667774  5678999999999999999999999999998  379999999999863

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do

>cd02855 Glycogen_branching_enzyme_N_term Glycogen branching enzyme N-terminus domain

Probab=97.60  E-value=0.00038  Score=54.93  Aligned_cols=68  Identities=26%  Similarity=0.433  Sum_probs=45.6

Q ss_pred             EEEEEe-eCCCceEEEEeccCCCCC-CCCCCCCCCCCCeEEEEEE-eCCce-EEEEEEEc-Ce--eecCCCCCeee
Q 020637           22 PVRFIW-PNGGRRVSLSGSFTRWSE-PMPMSPSEGCPAVFQIICR-LPPGH-HQYKFYVD-GE--WRHDENQPHVS   90 (323)
Q Consensus        22 ~v~F~w-~~~~~~V~l~Gsf~~W~~-~~~m~~~~~~~g~~~~~~~-LppG~-y~YkFiVD-G~--w~~d~~~p~~~   90 (323)
                      .++|+. .++|++|.|.++|++|.. ..+|.+.+ ..|.|.+.++ +++|. |.|++..+ |.  .+.||....+.
T Consensus        22 ~~~frv~aP~A~~V~l~~~~~~~~~~~~~m~~~~-~~G~w~~~v~~~~~~~~Y~~~v~~~~g~~~~~~DPYa~~~~   96 (106)
T cd02855          22 GVRFAVWAPNARRVSVVGDFNGWDGRRHPMRRRG-DSGVWELFIPGLGEGELYKYEILGADGHLPLKADPYAFYSE   96 (106)
T ss_pred             CEEEEEECCCCCEEEEEEECCCCCCcceecEECC-CCCEEEEEECCCCCCCEEEEEEECCCCCEEEeeCCCceeeE
Confidence            366765 568999999999999964 35898754 2799999886 66664 44444444 33  34566554443

Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the 1,4 alpha glucan branching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitina

>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.59  E-value=0.00013  Score=57.19  Aligned_cols=54  Identities=22%  Similarity=0.379  Sum_probs=47.7

Q ss_pred             cccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHH
Q 020637          155 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFI  211 (323)
Q Consensus       155 ~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i  211 (323)
                      ..+.++|.  ..++++..++++.+|++.|.++++..+||+|. .|+++|+||..|++
T Consensus        57 ~~v~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~-~g~~~Gilt~~dl~  110 (112)
T cd04624          57 TPVSEIMT--RDLVTVDPDEPVAEAAKLMRKNNIRHHLVVDK-GGELVGVISIRDLV  110 (112)
T ss_pred             cCHHHhcc--CCCEEECCCCcHHHHHHHHHHcCccEEEEEcC-CCcEEEEEEHHHhc
Confidence            45778884  56889999999999999999999999999985 68999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=97.58  E-value=0.00014  Score=57.69  Aligned_cols=56  Identities=23%  Similarity=0.416  Sum_probs=48.7

Q ss_pred             cccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHH
Q 020637          153 STHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL  212 (323)
Q Consensus       153 ~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~  212 (323)
                      ...++.++|  ...+++++.++++.+|+++|.+++...+||+|.  ++++|+||..|+++
T Consensus        65 ~~~~v~~~~--~~~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~~--~~~~Gvv~~~di~~  120 (121)
T cd04584          65 LKMPVKEIM--TKDVITVHPLDTVEEAALLMREHRIGCLPVVED--GRLVGIITETDLLR  120 (121)
T ss_pred             cCcCHHHHh--hCCCeEECCCCcHHHHHHHHHHcCCCeEEEeeC--CEEEEEEEHHHhhc
Confidence            345677777  457899999999999999999999999999984  79999999999863

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in

>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.57  E-value=0.00014  Score=58.07  Aligned_cols=55  Identities=16%  Similarity=0.430  Sum_probs=48.5

Q ss_pred             cccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHH
Q 020637          155 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL  212 (323)
Q Consensus       155 ~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~  212 (323)
                      ..+.++|  ...+++++.++++.+|++.|.+++...+||+|+ .++++|++|..|++.
T Consensus        67 ~~~~~~~--~~~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~-~~~~~Gvit~~dll~  121 (122)
T cd04637          67 RRAHQIM--TRDPITVSPDTPVDEASKLLLENSISCLPVVDE-NGQLIGIITWKDLLK  121 (122)
T ss_pred             hHHHHhh--cCCCeeeCCCCcHHHHHHHHHHcCCCeEeEECC-CCCEEEEEEHHHhhh
Confidence            3577888  457899999999999999999999999999985 689999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional

Probab=97.53  E-value=0.00017  Score=74.11  Aligned_cols=59  Identities=12%  Similarity=0.139  Sum_probs=52.0

Q ss_pred             cccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCC-CeEEEEEehHHHHHHHH
Q 020637          155 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFK-GRFVGVLSALDFILILR  215 (323)
Q Consensus       155 ~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~-~~~vGilT~~D~i~~l~  215 (323)
                      .++.|+|  +.+++++++++++.+|++.|.++++..+||+|++. ++++|+||.+|+++.+.
T Consensus       512 ~~v~dim--~~~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l~  571 (574)
T PRK01862        512 KTAADYA--HTPFPLLTPDMPLGDALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAYR  571 (574)
T ss_pred             chHHHhc--cCCCeeECCCCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHHH
Confidence            5688888  56789999999999999999999999999998643 58999999999987664

>cd05814 CBM20_Prei4 Prei4, N-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=97.53  E-value=0.00031  Score=57.41  Aligned_cols=56  Identities=25%  Similarity=0.525  Sum_probs=44.9

Q ss_pred             EEEEEeeC----CCceEEEEec---cCCCCCC--CCCCCCCCCCCeEEEEEEeCCc-eEEEEEEEc
Q 020637           22 PVRFIWPN----GGRRVSLSGS---FTRWSEP--MPMSPSEGCPAVFQIICRLPPG-HHQYKFYVD   77 (323)
Q Consensus        22 ~v~F~w~~----~~~~V~l~Gs---f~~W~~~--~~m~~~~~~~g~~~~~~~LppG-~y~YkFiVD   77 (323)
                      .|+|....    .+++|+|+|+   +.+|++.  .+|++.....+.|++++.||++ .++|||++.
T Consensus         2 ~v~F~v~~~~~~~ge~v~v~G~~~~LG~W~~~~a~~l~~~~~~~~~W~~~v~lp~~~~veYkY~~~   67 (120)
T cd05814           2 RVTFRVFASELAPGEVVAVVGSLPVLGNWQPEKAVPLEKEDDDCNLWKASIELPRGVDFQYRYFVA   67 (120)
T ss_pred             eEEEEEeeccCCCCCEEEEEeChHHhCCCCHHhCeeCccCCCcCCccEEEEEECCCCeEEEEEEEE
Confidence            57788764    4789999999   8899854  5888752125789999999998 799999994

Preimplantation protein 4 (Prei4) is a protein of unknown function that is expressed during mouse preimplantation embryogenesis. In addition to the N-terminal CBM20 domain, Prei4 contains a C-terminal glycerophosphoryl diester phosphodiesterase (GDPD) domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.

>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=97.52  E-value=0.0002  Score=58.20  Aligned_cols=48  Identities=19%  Similarity=0.343  Sum_probs=42.9

Q ss_pred             CCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637          259 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (323)
Q Consensus       259 ~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~  312 (323)
                      ++++++.+++++.+|+..|.++++.++||+|+   +|   +++|+||..|+++.
T Consensus         2 ~~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~---~~---~~~Gii~~~dl~~~   49 (124)
T cd04608           2 KAPVTVLPTVTCAEAIEILKEKGFDQLPVVDE---SG---KILGMVTLGNLLSS   49 (124)
T ss_pred             CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcC---CC---CEEEEEEHHHHHHH
Confidence            45789999999999999999999999999985   34   79999999999864

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten

>cd02856 Glycogen_debranching_enzyme_N_term Glycogen_debranching_enzyme N-terminal domain

Probab=97.50  E-value=0.00034  Score=55.49  Aligned_cols=53  Identities=21%  Similarity=0.401  Sum_probs=40.4

Q ss_pred             EEEE-eeCCCceEEEEeccCCCC--CCCCCCCCCCCCCeEEEEEE-eCCceEEEEEEEcCe
Q 020637           23 VRFI-WPNGGRRVSLSGSFTRWS--EPMPMSPSEGCPAVFQIICR-LPPGHHQYKFYVDGE   79 (323)
Q Consensus        23 v~F~-w~~~~~~V~l~Gsf~~W~--~~~~m~~~~~~~g~~~~~~~-LppG~y~YkFiVDG~   79 (323)
                      ++|+ |.+.|++|.|.. |++|.  ..++|++.+  +|+|.+.+. +.+|. .|+|.|||.
T Consensus        11 ~~F~vwAP~A~~V~L~l-~~~~~~~~~~~m~~~~--~GvW~~~v~~~~~g~-~Y~y~i~g~   67 (103)
T cd02856          11 CNFAVHSENATRIELCL-FDEDGSETRLPLTEEY--GGVWHGFLPGIKAGQ-RYGFRVHGP   67 (103)
T ss_pred             eEEEEECCCCCEEEEEE-EeCCCCEEEEEccccc--CCEEEEEECCCCCCC-EEEEEECCc
Confidence            5674 566799999998 66664  236898764  799999985 56665 799999994

Glycogen debranching enzymes have both 4-alpha-glucanotransferase and amylo-1,6-glucosidase activities. As a transferase it transfers a segment of a 1,4-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or another 1,4-alpha-D-glucan. As a glucosidase it catalyzes the endohydrolysis of 1,6-alpha-D-glucoside linkages at points of branching in chains of 1,4-linked alpha-D-glucose residues. The N-terminus of the glycogen debranching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.

>cd05809 CBM20_beta_amylase Beta-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=97.50  E-value=0.00075  Score=53.22  Aligned_cols=57  Identities=23%  Similarity=0.406  Sum_probs=43.0

Q ss_pred             eeEEEEEeeC----CCceEEEEe---ccCCCCCCC-CCCCCC-CCCCeEEEEEEeCCce-EEEEEEE
Q 020637           20 LVPVRFIWPN----GGRRVSLSG---SFTRWSEPM-PMSPSE-GCPAVFQIICRLPPGH-HQYKFYV   76 (323)
Q Consensus        20 ~~~v~F~w~~----~~~~V~l~G---sf~~W~~~~-~m~~~~-~~~g~~~~~~~LppG~-y~YkFiV   76 (323)
                      .++|+|....    .+++|+|+|   ++.+|+... +|.... ...+.|++++.||+|. ++|||++
T Consensus         2 ~v~v~f~v~~~~t~~G~~v~v~Gs~~~LG~W~~~~~~~~~~~~~~~~~W~~~~~lp~~~~veyKyv~   68 (99)
T cd05809           2 PVPQTFVVKNVPTTIGETVYITGSRAELGNWDTKQYPIQLYYNSHSNDWRGTVHLPAGRNIEFKAIK   68 (99)
T ss_pred             ceEEEEEEcccccCCCCEEEEEeChHHhCCCChhhhhhccccCCCCCCEEEEEEecCCCcEEEEEEE
Confidence            4799999842    478999999   567998642 343221 1257899999999984 9999999

Beta-amylase has, in addition to its C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 14, which hydrolyzes the alpha-1,4-glucosidic bonds of starch, yielding beta-maltose from the nonreducing end of the substrate. Beta-amylase is found in both plants and microorganisms, however the plant members lack a C-terminal CBM20 domain and are not included in this group. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1

>cd05820 CBM20_novamyl Novamyl (also known as acarviose transferase, ATase, maltogenic alpha-amylase, glucan 1,4-alpha-maltohydrolase, and AcbD), C-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=97.47  E-value=0.00079  Score=53.54  Aligned_cols=55  Identities=27%  Similarity=0.494  Sum_probs=43.7

Q ss_pred             eeEEEEEeeC-----CCceEEEEeccC---CCCCCC-----CCCCCCCCCCeEEEEEEeCCc-eEEEEEEE
Q 020637           20 LVPVRFIWPN-----GGRRVSLSGSFT---RWSEPM-----PMSPSEGCPAVFQIICRLPPG-HHQYKFYV   76 (323)
Q Consensus        20 ~~~v~F~w~~-----~~~~V~l~Gsf~---~W~~~~-----~m~~~~~~~g~~~~~~~LppG-~y~YkFiV   76 (323)
                      .+||+|+...     .|++++|+|+-.   +|++..     +|...  ....|.+++.||.| ..+|||++
T Consensus         2 ~~~v~f~~~~~~~t~~Ge~l~vvGs~~~LG~W~~~~~~a~~~l~~~--~~~~W~~~~~lp~~~~veyK~v~   70 (103)
T cd05820           2 QIPVIFTVQNTPETAPGEFLYLTGSVPELGNWSTSTDQAVGPLLCP--NWPDWFVVASVPAGTYIEFKFLK   70 (103)
T ss_pred             cccEEEEEeCCcCcCCCCEEEEEECcHHhCCCChhccccccccccC--CCCCEEEEEEcCCCCcEEEEEEE
Confidence            4899999962     378999999865   898732     66543  25689999999998 49999998

Novamyl has a five-domain structure similar to that of cyclodextrin glucanotransferase (CGTase). Novamyl has a substrate-binding surface with an open groove which can accommodate both cyclodextrins and linear substrates. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific reco

>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

Probab=97.43  E-value=0.00023  Score=71.19  Aligned_cols=57  Identities=19%  Similarity=0.375  Sum_probs=52.2

Q ss_pred             cccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHH
Q 020637          153 STHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILI  213 (323)
Q Consensus       153 ~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~  213 (323)
                      ...+++++|  ..++++++..+.+-+|.-+|.+++|+++||.+  +|+.+||||.+||+..
T Consensus       212 ~~~~V~evm--T~p~~svd~~~~~feAml~m~r~~I~hl~V~e--~gq~~Gilt~~dIl~l  268 (610)
T COG2905         212 KTQKVSEVM--TSPVISVDRGDFLFEAMLMMLRNRIKHLPVTE--DGQPLGILTLTDILRL  268 (610)
T ss_pred             cccchhhhh--ccCceeecCcchHHHHHHHHHHhCCceeeeec--CCeeeEEeeHHHHHHh
Confidence            457799999  58999999999999999999999999999996  6899999999999764

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=97.42  E-value=0.00025  Score=71.54  Aligned_cols=61  Identities=21%  Similarity=0.290  Sum_probs=52.7

Q ss_pred             ccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHH
Q 020637          154 THTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR  215 (323)
Q Consensus       154 ~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~  215 (323)
                      ..++.|+|..-.+++++.+++++.+|+++|.++++..+||+|+ +++++|+||.+|+++...
T Consensus       158 ~~~V~diMt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~-~g~liGIIT~~DIl~~~~  218 (495)
T PTZ00314        158 STPVSEVMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVND-NGELVALVSRSDLKKNRG  218 (495)
T ss_pred             CCCHHHhhCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcC-CCcEEEEEEehHhhhccc
Confidence            3568899943237999999999999999999999999999995 789999999999987544

>cd05813 CBM20_genethonin_1 Genethonin-1, C-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=97.42  E-value=0.00058  Score=53.32  Aligned_cols=54  Identities=20%  Similarity=0.409  Sum_probs=43.5

Q ss_pred             eEEEEEeeC----CCceEEEEeccC---CCCCCCCCCCCCCCCCeEEEEEEeCCce-EEEEEEE
Q 020637           21 VPVRFIWPN----GGRRVSLSGSFT---RWSEPMPMSPSEGCPAVFQIICRLPPGH-HQYKFYV   76 (323)
Q Consensus        21 ~~v~F~w~~----~~~~V~l~Gsf~---~W~~~~~m~~~~~~~g~~~~~~~LppG~-y~YkFiV   76 (323)
                      |+|+|+..+    +++.++|+|+-.   +|+...+|...+  .+.|++++.||++. ++|||++
T Consensus         1 v~v~F~v~~~t~~~~e~l~v~G~~~~LG~W~~~~~l~~~~--~~~W~~~v~lp~~~~ieYky~~   62 (95)
T cd05813           1 VNVTFRVHYITHSDAQLVAVTGDHEELGSWHSYIPLQYVK--DGFWSASVSLPVDTHVEWKFVL   62 (95)
T ss_pred             CeEEEEEEeeeCCCCeEEEEEcChHHHCCCCccccCcCCC--CCCEEEEEEecCCCcEEEEEEE
Confidence            468888853    357788999854   798878997654  57899999999985 9999998

Genethonin-1 is a human skeletal muscle protein with no known function. It contains a C-terminal CBM20 domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.

>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria

Probab=97.41  E-value=0.00037  Score=54.76  Aligned_cols=49  Identities=16%  Similarity=0.373  Sum_probs=43.8

Q ss_pred             ccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHH
Q 020637          160 LLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL  212 (323)
Q Consensus       160 vmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~  212 (323)
                      +|  ..+..+++.++++.+|+++|.++++..+||++  .|+++|+||..|+++
T Consensus        56 ~m--~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVv~--~~~~~Gvvt~~dl~~  104 (105)
T cd04591          56 YI--DPSPFTVSPRTSLEKVHQLFRKLGLRHLLVVD--EGRLVGIITRKDLLK  104 (105)
T ss_pred             hc--cCCCceECCCCcHHHHHHHHHHcCCCEEEEEE--CCeEEEEEEhhhhhc
Confidence            56  35788999999999999999999999999996  579999999999863

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS

>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=97.39  E-value=0.00029  Score=54.71  Aligned_cols=46  Identities=20%  Similarity=0.414  Sum_probs=42.0

Q ss_pred             CcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (323)
Q Consensus       260 ~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~  312 (323)
                      +++++.+++++.+|+..|.+++++++||+|+    |   +++|++|..|++++
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~----~---~~~G~v~~~dl~~~   47 (110)
T cd04609           2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD----G---RVVGSIDESDLLDA   47 (110)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCceeeEeeC----C---eeEEEEeHHHHHHH
Confidence            4688999999999999999999999999983    4   79999999999887

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote

>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.39  E-value=0.00049  Score=53.50  Aligned_cols=52  Identities=25%  Similarity=0.477  Sum_probs=45.5

Q ss_pred             ccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHH
Q 020637          156 TVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFI  211 (323)
Q Consensus       156 ~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i  211 (323)
                      .+.++|  ...++++..++++.+|+++|.+++...+||+|.  ++++|++|..|++
T Consensus        53 ~~~~~~--~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~--~~~~G~it~~d~~  104 (106)
T cd04638          53 QLALLM--TRDPPTVSPDDDVKEAAKLMVENNIRRVPVVDD--GKLVGIVTVADIV  104 (106)
T ss_pred             hHHHHh--cCCCceECCCCCHHHHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHhh
Confidence            456667  356888999999999999999999999999983  6999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=97.37  E-value=0.00039  Score=55.06  Aligned_cols=57  Identities=11%  Similarity=0.214  Sum_probs=47.7

Q ss_pred             cccccccccCCCCCeEEEecchhHHHHHHHHHHCCCC---eeeeEeCCCCeEEEEEehHHHHH
Q 020637          153 STHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLP---MVPLWDDFKGRFVGVLSALDFIL  212 (323)
Q Consensus       153 ~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~---~lPV~d~~~~~~vGilT~~D~i~  212 (323)
                      ...++.++|  ....+++..+.++.+|+++|.+++..   .+||+++ .|+++|+||..|+++
T Consensus        59 ~~~~v~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~-~~~~~Gvvs~~di~~  118 (119)
T cd04598          59 GKKPVSEVM--DPDPLIVEADTPLEEVSRLATGRDSQNLYDGFIVTE-EGRYLGIGTVKDLLR  118 (119)
T ss_pred             cCCcHHHhc--CCCcEEecCCCCHHHHHHHHHcCCcccccccEEEee-CCeEEEEEEHHHHhc
Confidence            456788999  45789999999999999999999864   4578885 689999999999863

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK15094 magnesium/cobalt efflux protein CorC; Provisional

Probab=97.35  E-value=0.00027  Score=66.60  Aligned_cols=56  Identities=14%  Similarity=0.239  Sum_probs=49.2

Q ss_pred             ccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHH
Q 020637          156 TVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR  215 (323)
Q Consensus       156 ~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~  215 (323)
                      ++.++|   ++++++..++++.+|++.|.+++...+||+|+ .|.++|+||..|++..+.
T Consensus       134 ~l~~l~---r~~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe-~G~viGiVTleDIle~iv  189 (292)
T PRK15094        134 SMDKVL---RQAVVVPESKRVDRMLKEFRSQRYHMAIVIDE-FGGVSGLVTIEDILELIV  189 (292)
T ss_pred             CHHHHc---CCCcCcCCCCcHHHHHHHHHhcCCEEEEEEeC-CCCEEEEeEHHHHHHHHh
Confidence            356777   46778999999999999999999999999995 688999999999988664

>TIGR03520 GldE gliding motility-associated protein GldE

Probab=97.34  E-value=0.00025  Score=69.98  Aligned_cols=55  Identities=16%  Similarity=0.233  Sum_probs=48.7

Q ss_pred             CCCCCCC--CcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637          253 NGRPCPR--PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (323)
Q Consensus       253 ~~~im~~--~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~  312 (323)
                      +.++|++  .++++..++++.++++.|.++++.|+||.++  +.+   +++|||+.+|++.+
T Consensus       193 v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~--~~d---~ivGiv~~kDll~~  249 (408)
T TIGR03520       193 TKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKE--TID---NITGVLYIKDLLPH  249 (408)
T ss_pred             eeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcC--CCC---ceEEEEEHHHHHhH
Confidence            4568986  7999999999999999999999999999985  223   79999999999976

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.

>PLN02447 1,4-alpha-glucan-branching enzyme

Probab=97.34  E-value=0.00046  Score=72.45  Aligned_cols=64  Identities=23%  Similarity=0.426  Sum_probs=47.3

Q ss_pred             EEEEE-eeCCCceEEEEeccCCCCCC-CCCCCCCCCCCeEEEEEEe-------CCceEEEEEEEc---Ce--eecCCCCC
Q 020637           22 PVRFI-WPNGGRRVSLSGSFTRWSEP-MPMSPSEGCPAVFQIICRL-------PPGHHQYKFYVD---GE--WRHDENQP   87 (323)
Q Consensus        22 ~v~F~-w~~~~~~V~l~Gsf~~W~~~-~~m~~~~~~~g~~~~~~~L-------ppG~y~YkFiVD---G~--w~~d~~~p   87 (323)
                      .++|+ |.+.|++|+|+|+||+|+.. .+|++.+  .|+|++.++-       +.| ..|||.|.   |.  .+.||-..
T Consensus       115 g~~FrvWAP~A~~V~LvGdFN~W~~~~~~M~~~~--~GvWe~~ip~~~g~~~~~~G-~~Yky~i~~~~g~~~~r~dpya~  191 (758)
T PLN02447        115 GITYREWAPGAKAAALIGDFNNWNPNAHWMTKNE--FGVWEIFLPDADGSPAIPHG-SRVKIRMETPDGRWVDRIPAWIK  191 (758)
T ss_pred             CEEEEEECCCCCEEEEEEecCCCCCCccCceeCC--CCEEEEEECCccccccCCCC-CEEEEEEEeCCCcEEeecCchHh
Confidence            45665 57789999999999999874 6999865  7999999874       334 36777773   54  46677654


Q ss_pred             e
Q 020637           88 H   88 (323)
Q Consensus        88 ~   88 (323)
                      .
T Consensus       192 ~  192 (758)
T PLN02447        192 Y  192 (758)
T ss_pred             e
Confidence            3

>PRK12313 glycogen branching enzyme; Provisional

Probab=97.34  E-value=0.00061  Score=70.88  Aligned_cols=67  Identities=21%  Similarity=0.282  Sum_probs=49.0

Q ss_pred             EEEEEe-eCCCceEEEEeccCCCCCC-CCCCCCCCCCCeEEEEEE-eCCc-eEEEEEEE-cCee--ecCCCCCeee
Q 020637           22 PVRFIW-PNGGRRVSLSGSFTRWSEP-MPMSPSEGCPAVFQIICR-LPPG-HHQYKFYV-DGEW--RHDENQPHVS   90 (323)
Q Consensus        22 ~v~F~w-~~~~~~V~l~Gsf~~W~~~-~~m~~~~~~~g~~~~~~~-LppG-~y~YkFiV-DG~w--~~d~~~p~~~   90 (323)
                      .|+|+. .+.|++|+|+|+||+|.+. .+|.+..  .|+|+++++ +++| .|.|++.. +|.|  ..||......
T Consensus        39 gv~Frv~AP~A~~V~v~gdfn~w~~~~~~m~~~~--~Gvw~~~i~~~~~g~~Y~y~v~~~~g~~~~~~DPya~~~~  112 (633)
T PRK12313         39 GTYFRVWAPNAQAVSVVGDFNDWRGNAHPLVRRE--SGVWEGFIPGAKEGQLYKYHISRQDGYQVEKIDPFAFYFE  112 (633)
T ss_pred             cEEEEEECCCCCEEEEEEecCCCCcccccccccC--CCEEEEEeCCCCCCCEEEEEEECCCCeEEecCCCceEEEe
Confidence            678876 4689999999999999864 5898864  799999998 4444 57777654 5665  4566554443

>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.30  E-value=0.00058  Score=56.72  Aligned_cols=54  Identities=22%  Similarity=0.495  Sum_probs=48.2

Q ss_pred             ccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHH
Q 020637          154 THTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFI  211 (323)
Q Consensus       154 ~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i  211 (323)
                      ..++.++|  ...++++..++++.+|++.|.+++...+||++.  ++++|++|..|++
T Consensus        88 ~~~v~~~~--~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~--~~~~Gvvt~~dl~  141 (143)
T cd04634          88 KMKVRDIM--TKKVITISPDASIEDAAELMVRHKIKRLPVVED--GRLVGIVTRGDII  141 (143)
T ss_pred             cCCHHHHc--CCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHhh
Confidence            45678888  457899999999999999999999999999984  7999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK12568 glycogen branching enzyme; Provisional

Probab=97.27  E-value=0.00064  Score=71.21  Aligned_cols=65  Identities=25%  Similarity=0.501  Sum_probs=49.6

Q ss_pred             EEEEEe-eCCCceEEEEeccCCCCCC-CCCCCCCCCCCeEEEEEE-eCCceEEEEEEE---cCee--ecCCCCCee
Q 020637           22 PVRFIW-PNGGRRVSLSGSFTRWSEP-MPMSPSEGCPAVFQIICR-LPPGHHQYKFYV---DGEW--RHDENQPHV   89 (323)
Q Consensus        22 ~v~F~w-~~~~~~V~l~Gsf~~W~~~-~~m~~~~~~~g~~~~~~~-LppG~y~YkFiV---DG~w--~~d~~~p~~   89 (323)
                      -|+|+. .+.|++|.|+|+||+|+.. .+|.+..  .|+|++.++ +.+| ..|||.|   ||.+  +.||.....
T Consensus       139 Gv~FaVWAPnA~~VsVvGDFN~Wdg~~~pM~~~~--~GVWelfipg~~~G-~~YKYeI~~~~G~~~~k~DPYA~~~  211 (730)
T PRK12568        139 GVRFAVWAPHAQRVAVVGDFNGWDVRRHPMRQRI--GGFWELFLPRVEAG-ARYKYAITAADGRVLLKADPVARQT  211 (730)
T ss_pred             cEEEEEECCCCCEEEEEEecCCCCccceecccCC--CCEEEEEECCCCCC-CEEEEEEEcCCCeEeecCCCcceEe
Confidence            568865 5689999999999999864 6898753  899999986 6777 4577776   7865  467766543

>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.26  E-value=0.00054  Score=52.61  Aligned_cols=53  Identities=25%  Similarity=0.555  Sum_probs=46.4

Q ss_pred             cccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHH
Q 020637          157 VYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL  212 (323)
Q Consensus       157 ~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~  212 (323)
                      +.++|  ...++++..+.++.+|++.|.+++...+||+|+ .++++|++|..|+++
T Consensus        60 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~~G~i~~~dl~~  112 (113)
T cd02205          60 VGDVM--TRDVVTVSPDTSLEEAAELMLEHGIRRLPVVDD-EGRLVGIVTRSDILR  112 (113)
T ss_pred             HHHHh--cCCceecCCCcCHHHHHHHHHHcCCCEEEEEcC-CCcEEEEEEHHHhhc
Confidence            55667  457888899999999999999999999999996 589999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali

>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=97.26  E-value=0.0009  Score=67.72  Aligned_cols=135  Identities=8%  Similarity=0.062  Sum_probs=90.6

Q ss_pred             CeEEEecc-hhHHHHHHHHHHCCCCeeeeE-eCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHHHHHHHHH
Q 020637          166 KVTALDVN-LAVKQAFHVLYEQGLPMVPLW-DDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQ  243 (323)
Q Consensus       166 ~vv~vd~~-~~v~~A~~~l~~~~i~~lPV~-d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~  243 (323)
                      .++++..+ .++.+.-.+|.+....+.||+ +++.++++|++..+|+.-.+.......+.......  ......+.... 
T Consensus       557 ~L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~~sq~lvGfv~rr~l~~~i~~ar~~q~~~~~~~~--~f~~~~~~~~~-  633 (696)
T KOG0475|consen  557 CLIVITQDSMTLEDLESLMEDTDFSGFPVVLSEDSQRLVGFVLRRNLFLAILNARKIQSFIVTTSI--YFNDPSPSAVA-  633 (696)
T ss_pred             hheeccccceeHHHHHHHHhhcccCCceEEEccccceeEEEEchHHHHHHHhhhccccccceeccc--ccCCCCccccC-
Confidence            34444444 789999999999999999988 44568999999999998655433221110000000  00000000000 


Q ss_pred             hhcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637          244 LNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (323)
Q Consensus       244 ~~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~  312 (323)
                       .... .....++|.-.++++...++..-++.++-+-+++.+-|..+    |   +|+|+||.+|+|++
T Consensus       634 -~~~~-~~~lk~il~~tp~tv~d~tp~~~v~~~F~~lg~~~~~v~~~----G---~l~Giitkkd~l~~  693 (696)
T KOG0475|consen  634 -GIPS-RLDLKDILDMTPFTVTDLTPMETVVDLFRKLGLRQILVTKN----G---ILLGIITKKDCLRH  693 (696)
T ss_pred             -CCCC-CcCceeeccCCcccccccCcHHHHHHHHHhhCceEEEEccC----C---eeEeeeehHHHHHh
Confidence             0000 11123478888899999999999999999999999998853    6   89999999999987

>TIGR01137 cysta_beta cystathionine beta-synthase

Probab=97.18  E-value=0.00046  Score=68.73  Aligned_cols=54  Identities=15%  Similarity=0.244  Sum_probs=48.4

Q ss_pred             CCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637          253 NGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (323)
Q Consensus       253 ~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~  312 (323)
                      +.++|.++++++.+++++.+++..|.++++.++||+|+   ++   +++||||..||+++
T Consensus       337 v~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~---~~---~~~Givt~~dl~~~  390 (454)
T TIGR01137       337 VKDLHLPAPVTVHPTETVGDAIEILREYGFDQLPVVTE---AG---KVLGSVTLRELLSA  390 (454)
T ss_pred             HHHhCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcC---CC---eEEEEEEHHHHHHH
Confidence            34589999999999999999999999999999999985   34   79999999999874

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.

>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]

Probab=97.16  E-value=0.001  Score=63.23  Aligned_cols=66  Identities=14%  Similarity=0.338  Sum_probs=57.5

Q ss_pred             cccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCC
Q 020637          153 STHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNG  221 (323)
Q Consensus       153 ~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~  221 (323)
                      .+.+.--+|  ++..+++.+.+++..+.+.|.-.+|..+||+|+ ..+++||+|.+|+++.|+.....+
T Consensus       247 ~~t~ieKVM--tknp~tv~~~tsVAsvaq~MiwE~iem~PVv~~-n~~llGiitR~dvlk~lq~~q~qp  312 (432)
T COG4109         247 PSTTIEKVM--TKNPITVRAKTSVASVAQMMIWEGIEMLPVVDS-NNTLLGIITRQDVLKSLQMIQRQP  312 (432)
T ss_pred             CCccHHHHh--ccCCeeecccchHHHHHHHHHhccceeeeEEcC-CceEEEEEEHHHHHHHHHHhccCC
Confidence            345566678  577899999999999999999999999999996 689999999999999998776554

>TIGR00393 kpsF KpsF/GutQ family protein

Probab=97.14  E-value=0.0004  Score=64.04  Aligned_cols=54  Identities=11%  Similarity=0.189  Sum_probs=47.8

Q ss_pred             CCCCCCCC-cEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637          253 NGRPCPRP-LVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (323)
Q Consensus       253 ~~~im~~~-~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~  312 (323)
                      ++++|.++ ++++.+++++.+|++.|.+.++.++||+|+  + |   +++|++|..|++++
T Consensus       157 v~~im~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~--~-g---~~~Givt~~dl~~~  211 (268)
T TIGR00393       157 VKDLMQTTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDE--N-N---QLVGVFTDGDLRRA  211 (268)
T ss_pred             HHHHhCCCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeC--C-C---CEEEEEEcHHHHHH
Confidence            34578888 999999999999999999999999999985  3 5   79999999999875

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.

>cd05811 CBM20_glucoamylase Glucoamylase (glucan1,4-alpha-glucosidase), C-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=97.13  E-value=0.0023  Score=50.83  Aligned_cols=59  Identities=25%  Similarity=0.501  Sum_probs=45.3

Q ss_pred             CeeeEEEEEeeC---CCceEEEEeccC---CCCCC--CCCCCCC--CCCCeEEEEEEeCCce-EEEEEEE
Q 020637           18 SILVPVRFIWPN---GGRRVSLSGSFT---RWSEP--MPMSPSE--GCPAVFQIICRLPPGH-HQYKFYV   76 (323)
Q Consensus        18 ~~~~~v~F~w~~---~~~~V~l~Gsf~---~W~~~--~~m~~~~--~~~g~~~~~~~LppG~-y~YkFiV   76 (323)
                      +..++|+|...+   .|+.|+|+|+-.   +|++.  .+|....  ...+.|++++.||++. ++|||++
T Consensus         4 ~~~v~V~F~i~~~t~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~~t~~~~~W~~~v~lp~~~~veYKy~~   73 (106)
T cd05811           4 ATTVAVTFNERVTTSYGENIKIVGSIPQLGNWDTSSAVALSASQYTSSNPLWSVTIPLPAGTSFEYKFIR   73 (106)
T ss_pred             CCEEEEEEEEeeEcCCCCeEEEEeCcHHHCCCChhhCcccccccCccCCCcEEEEEEeCCCCcEEEEEEE
Confidence            356889998864   489999999865   79864  5786431  1246899999999985 9999997

Glucoamylases are inverting, exo-acting starch hydrolases that hydrolyze starch and related polysaccharides by releasing the nonreducing end glucose. They are mainly active on alpha-1,4-glycosidic bonds but also have some activity towards 1,6-glycosidic bonds occurring in natural oligosaccharides. The ability of glucoamylases to cleave 1-6-glycosidic binds is called "debranching activity" and is of importance in industrial applications, where complete degradation of starch to glucose is needed. Most glucoamylases are multidomain proteins containing an N-terminal catalytic domain, a C-terminal CBM20 domain, and a highly O-glycosylated linker region that connects the two. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also

>cd02852 Isoamylase_N_term Isoamylase N-terminus domain

Probab=97.13  E-value=0.0015  Score=53.06  Aligned_cols=60  Identities=25%  Similarity=0.491  Sum_probs=43.6

Q ss_pred             EEEE-eeCCCceEEEEeccCCCC---C--CCCCCCCC-CCCCeEEEEEE-eCCceEEEEEEEcCeeecCC
Q 020637           23 VRFI-WPNGGRRVSLSGSFTRWS---E--PMPMSPSE-GCPAVFQIICR-LPPGHHQYKFYVDGEWRHDE   84 (323)
Q Consensus        23 v~F~-w~~~~~~V~l~Gsf~~W~---~--~~~m~~~~-~~~g~~~~~~~-LppG~y~YkFiVDG~w~~d~   84 (323)
                      ++|+ |.+.|++|.|.. |++|.   +  .++|.+.+ +..|+|.+.+. +.+|. .|+|.|+|.|..++
T Consensus         9 ~~F~vwAP~A~~V~L~l-f~~~~~~~~~~~~~m~~~~~~~~gvW~~~v~~~~~g~-~Y~y~v~g~~~p~~   76 (119)
T cd02852           9 VNFSVYSSNATAVELLL-FDPGDGDEPALEIELDPSVNRTGDVWHVFVEGLKPGQ-LYGYRVDGPFEPEQ   76 (119)
T ss_pred             EEEEEECCCCCEEEEEE-EeCCCCCCceEEEeCcCcccccCCEEEEEECCCCCCC-EEEEEECCCCCCCc
Confidence            6675 567899999999 88886   2  24776543 23589999986 67776 79999999754443

Isoamylase (aka glycogen 6-glucanohydrolase) is one of the starch-debranching enzymes that catalyzes the hydrolysis of alpha-1,6-glucosidic linkages specific in alpha-glucans such as amylopectin or glycogen. Isoamylase contains a bound calcium ion, but this is not in the same position as the conserved calcium ion that has been reported in other alpha-amylase family enzymes. The N-terminus of isoamylase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=97.11  E-value=0.00071  Score=67.59  Aligned_cols=60  Identities=22%  Similarity=0.425  Sum_probs=52.6

Q ss_pred             ccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHH
Q 020637          154 THTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR  215 (323)
Q Consensus       154 ~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~  215 (323)
                      ..++.++|.. .+++++..++++.+|+++|.++++..+||+|+ .|+++|+||..|+++.+.
T Consensus       142 ~~~V~dvm~~-~~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe-~G~lvGiVT~~DIl~~~~  201 (450)
T TIGR01302       142 GKPVSEVMTR-EEVITVPEGIDLEEALKVLHEHRIEKLPVVDK-NGELVGLITMKDIVKRRK  201 (450)
T ss_pred             CCCHHHhhCC-CCCEEECCCCcHHHHHHHHHHcCCCeEEEEcC-CCcEEEEEEhHHhhhccc
Confidence            4567888831 38999999999999999999999999999995 789999999999987654

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>PRK14706 glycogen branching enzyme; Provisional

Probab=97.10  E-value=0.0014  Score=68.21  Aligned_cols=66  Identities=29%  Similarity=0.500  Sum_probs=48.9

Q ss_pred             EEEEEe-eCCCceEEEEeccCCCCCC-CCCCCCCCCCCeEEEEEEe-CCceEEEEEEEcC---ee--ecCCCCCeee
Q 020637           22 PVRFIW-PNGGRRVSLSGSFTRWSEP-MPMSPSEGCPAVFQIICRL-PPGHHQYKFYVDG---EW--RHDENQPHVS   90 (323)
Q Consensus        22 ~v~F~w-~~~~~~V~l~Gsf~~W~~~-~~m~~~~~~~g~~~~~~~L-ppG~y~YkFiVDG---~w--~~d~~~p~~~   90 (323)
                      -++|+. .+.|++|.|+|+||+|... .+|.+.+  .|+|++.++- .+| ..|||.|+|   .+  +.||....+.
T Consensus        39 Gv~FrvwAP~A~~V~Lvgdfn~w~~~~~pM~~~~--~GvW~~~vpg~~~g-~~Yky~I~~~~g~~~~~~DPYa~~~~  112 (639)
T PRK14706         39 GVRFAVWAPGAQHVSVVGDFNDWNGFDHPMQRLD--FGFWGAFVPGARPG-QRYKFRVTGAAGQTVDKMDPYGSFFE  112 (639)
T ss_pred             cEEEEEECCCCCEEEEEEecCCcccccccccccC--CCEEEEEECCCCCC-CEEEEEEECCCCCEEeccCcceEEEe
Confidence            467765 5689999999999999864 6998865  6999999874 445 468888854   33  5677655443

>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]

Probab=97.09  E-value=0.00075  Score=67.10  Aligned_cols=58  Identities=17%  Similarity=0.348  Sum_probs=51.5

Q ss_pred             cccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHH
Q 020637          155 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR  215 (323)
Q Consensus       155 ~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~  215 (323)
                      ..+.++|  ...++++.+++...++.+++.++++.++||+|+ .++++|++|.-|+++++.
T Consensus       196 ~~i~~im--~~~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~-~~~LiG~itiDDiidvi~  253 (451)
T COG2239         196 ELLKDLM--EDDVVSVLADDDQEEVARLFEKYDLLAVPVVDE-DNRLIGIITIDDIIDVIE  253 (451)
T ss_pred             hHHHHHh--cccceeecccCCHHHHHHHHHHhCCeecceECC-CCceeeeeeHHHHHHHHH
Confidence            3456778  355899999999999999999999999999995 789999999999998765

>cd05817 CBM20_DSP Dual-specificity phosphatase (DSP), N-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=97.09  E-value=0.0023  Score=50.47  Aligned_cols=52  Identities=25%  Similarity=0.455  Sum_probs=40.6

Q ss_pred             EEEEeeC---CCceEEEEec---cCCCCCC--CCCCCCCCCCCeEEEEEEeCCc-eEEEEEEE
Q 020637           23 VRFIWPN---GGRRVSLSGS---FTRWSEP--MPMSPSEGCPAVFQIICRLPPG-HHQYKFYV   76 (323)
Q Consensus        23 v~F~w~~---~~~~V~l~Gs---f~~W~~~--~~m~~~~~~~g~~~~~~~LppG-~y~YkFiV   76 (323)
                      ++|+.++   .|+.++|+|+   .-+|++.  .+|+..+  ...|++++.||++ .++|||++
T Consensus         2 v~F~i~~~t~~Ge~l~v~Gs~~~LG~W~~~~a~~m~~~~--~~~W~~~v~lp~~~~veYKY~i   62 (100)
T cd05817           2 VTFKIHYPTQFGEAVYISGNCNQLGNWNPSKAKRMQWNE--GDLWTVDVGIPESVYIEYKYFV   62 (100)
T ss_pred             EEEEEEEEcCCCCEEEEEeCcHHHCCCCccccCcccCCC--CCCEEEEEEECCCCcEEEEEEE
Confidence            4555542   4799999999   5589864  5887654  5689999999987 59999998

This CBM20 domain is located at the N-terminus of a protein tyrosine phosphatase of unknown function found in slime molds and ciliated protozoans. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.

>PRK14705 glycogen branching enzyme; Provisional

Probab=97.01  E-value=0.0012  Score=72.78  Aligned_cols=63  Identities=24%  Similarity=0.497  Sum_probs=47.5

Q ss_pred             EEEEEe-eCCCceEEEEeccCCCCCC-CCCCCCCCCCCeEEEEEE-eCCceEEEEEEEc---Cee--ecCCCC
Q 020637           22 PVRFIW-PNGGRRVSLSGSFTRWSEP-MPMSPSEGCPAVFQIICR-LPPGHHQYKFYVD---GEW--RHDENQ   86 (323)
Q Consensus        22 ~v~F~w-~~~~~~V~l~Gsf~~W~~~-~~m~~~~~~~g~~~~~~~-LppG~y~YkFiVD---G~w--~~d~~~   86 (323)
                      -++|+. .+.|++|.|+|+||+|... .+|.+.. ..|+|++.++ +.+|. .|||.|+   |.|  +.||..
T Consensus       639 Gv~F~VWAP~A~~V~vvgdFN~w~~~~~~m~~~~-~~GvW~~fipg~~~G~-~Yky~i~~~~g~~~~k~DPyA  709 (1224)
T PRK14705        639 GVSFAVWAPNAQAVRVKGDFNGWDGREHSMRSLG-SSGVWELFIPGVVAGA-CYKFEILTKAGQWVEKADPLA  709 (1224)
T ss_pred             eEEEEEECCCCCEEEEEEEecCCCCCcccceECC-CCCEEEEEECCCCCCC-EEEEEEEcCCCcEEecCCccc
Confidence            567765 6789999999999999874 5888743 3799999986 78885 6888884   544  455554

>PRK05402 glycogen branching enzyme; Provisional

Probab=97.00  E-value=0.0019  Score=68.35  Aligned_cols=66  Identities=27%  Similarity=0.431  Sum_probs=48.1

Q ss_pred             eEEEEEee-CCCceEEEEeccCCCCCC-CCCCCCCCCCCeEEEEEE-eCCc-eEEEEEEEc-Cee--ecCCCCC
Q 020637           21 VPVRFIWP-NGGRRVSLSGSFTRWSEP-MPMSPSEGCPAVFQIICR-LPPG-HHQYKFYVD-GEW--RHDENQP   87 (323)
Q Consensus        21 ~~v~F~w~-~~~~~V~l~Gsf~~W~~~-~~m~~~~~~~g~~~~~~~-LppG-~y~YkFiVD-G~w--~~d~~~p   87 (323)
                      ..++|+.- +.|++|.|+|+||+|... .+|++.. ..|.|.+.++ +++| .|.|++..+ |.|  ..||..-
T Consensus       131 ~gv~FrvwAP~A~~V~l~gdfn~w~~~~~~m~~~~-~~Gvw~~~i~~~~~g~~Y~y~v~~~~g~~~~~~DPYa~  203 (726)
T PRK05402        131 SGVRFAVWAPNARRVSVVGDFNGWDGRRHPMRLRG-ESGVWELFIPGLGEGELYKFEILTADGELLLKADPYAF  203 (726)
T ss_pred             CcEEEEEECCCCCEEEEEEEcCCCCCccccceEcC-CCCEEEEEeCCCCCCCEEEEEEeCCCCcEeecCCCceE
Confidence            35788875 579999999999999864 6898862 3799999986 6666 577777664 444  4455443

>cd05816 CBM20_DPE2_repeat2 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 2

Probab=96.98  E-value=0.0033  Score=49.53  Aligned_cols=52  Identities=19%  Similarity=0.386  Sum_probs=41.7

Q ss_pred             EEEEeeC----CCceEEEEecc---CCCCCC--CCCCCCCCCCCeEEEEEEeCCc--eEEEEEEE
Q 020637           23 VRFIWPN----GGRRVSLSGSF---TRWSEP--MPMSPSEGCPAVFQIICRLPPG--HHQYKFYV   76 (323)
Q Consensus        23 v~F~w~~----~~~~V~l~Gsf---~~W~~~--~~m~~~~~~~g~~~~~~~LppG--~y~YkFiV   76 (323)
                      |+|+...    .+++|+|+|+-   .+|++.  .+|+...  ...|++.+.+|++  .++|||++
T Consensus         2 v~f~v~~~~~~~Ge~v~i~Gs~~~LG~W~~~~a~~l~~~~--~~~W~~~v~~p~~~~~ieYKyvi   64 (99)
T cd05816           2 VQFKILCPYVPKGQSVYVTGSSPELGNWDPQKALKLSDVG--FPIWEADIDISKDSFPFEYKYII   64 (99)
T ss_pred             EEEEEEcCccCCCCEEEEEEChHHhCCCCccccccCCCCC--CCcEEEEEEeCCCCccEEEEEEE
Confidence            6777753    47899999985   489864  5888754  5789999999986  59999998

DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal CBM20 domains. Included in this group are PDE2-like proteins from Dictyostelium, Entamoeba, and Bacteroides. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in star

>cd05807 CBM20_CGTase CGTase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=96.96  E-value=0.0057  Score=48.27  Aligned_cols=57  Identities=23%  Similarity=0.285  Sum_probs=42.3

Q ss_pred             eeEEEEEee-C---CCceEEEEeccC---CCCCCC--CCC-C-CCCCCCeEEEEEEeCCc-eEEEEEEE
Q 020637           20 LVPVRFIWP-N---GGRRVSLSGSFT---RWSEPM--PMS-P-SEGCPAVFQIICRLPPG-HHQYKFYV   76 (323)
Q Consensus        20 ~~~v~F~w~-~---~~~~V~l~Gsf~---~W~~~~--~m~-~-~~~~~g~~~~~~~LppG-~y~YkFiV   76 (323)
                      .++|+|..+ .   .|++|+|+|+-.   +|++..  .|. . .......|++++.||.| .++|||++
T Consensus         2 ~v~v~f~v~~~~t~~Gq~l~v~Gs~~~LG~W~~~~a~~~~~~~~~~~~~~W~~~~~lp~~~~~eyK~~~   70 (101)
T cd05807           2 QVSVRFVVNNATTQLGENVYLVGNVHELGNWDPSKAIGPFFNQVVYQYPNWYYDVSVPAGTTIEFKFIK   70 (101)
T ss_pred             cEEEEEEEeccccCCCCEEEEEECHHHHCCCChHHccccccccCCCcCCcEEEEEEcCCCCcEEEEEEE
Confidence            478999985 2   479999999865   898642  222 1 11235689999999998 59999998

CGTase, also known as cyclodextrin glycosyltransferase and cyclodextrin glucanotransferase, catalyzes the formation of various cyclodextrins (alpha-1,4-glucans) from starch. CGTase has, in addition to its C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13 and an IPT domain of unknown function. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific

>cd05467 CBM20 The family 20 carbohydrate-binding module (CBM20), also known as the starch-binding domain, is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase)

Probab=96.93  E-value=0.0044  Score=48.00  Aligned_cols=53  Identities=26%  Similarity=0.459  Sum_probs=41.3

Q ss_pred             EEEEeeC---CCceEEEEeccC---CCCCC--CCCCCCCCCCCeEEEEEEeCC--c-eEEEEEEE
Q 020637           23 VRFIWPN---GGRRVSLSGSFT---RWSEP--MPMSPSEGCPAVFQIICRLPP--G-HHQYKFYV   76 (323)
Q Consensus        23 v~F~w~~---~~~~V~l~Gsf~---~W~~~--~~m~~~~~~~g~~~~~~~Lpp--G-~y~YkFiV   76 (323)
                      |+|+..+   .|+.++|+|+..   +|++.  .+|+..+ ..+.|++.+.+|+  + .++|||++
T Consensus         2 v~f~i~~~t~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~-~~~~W~~~v~~~~~~~~~~~yKy~~   65 (96)
T cd05467           2 VRFQVRCTTQFGQSVYVVGSHPELGNWDPAKALRLNTSN-SYPLWTGEIPLPAPEGQVIEYKYVI   65 (96)
T ss_pred             EEEEEEEECCCCCEEEEEeCcHHhCCcChhcCccccCCC-CCCcEEEEEEecCCCCCeEEEEEEE
Confidence            4566653   589999999976   89853  5887653 2578999999999  7 69999998

CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.

>cd05810 CBM20_alpha_MTH Glucan 1,4-alpha-maltotetraohydrolase (alpha-MTH), C-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=96.82  E-value=0.0094  Score=46.84  Aligned_cols=54  Identities=22%  Similarity=0.408  Sum_probs=42.1

Q ss_pred             eEEEEEee-C---CCceEEEEeccC---CCCCC--CCCCCCCCCCCeEEEEEEeCCc-eEEEEEEE
Q 020637           21 VPVRFIWP-N---GGRRVSLSGSFT---RWSEP--MPMSPSEGCPAVFQIICRLPPG-HHQYKFYV   76 (323)
Q Consensus        21 ~~v~F~w~-~---~~~~V~l~Gsf~---~W~~~--~~m~~~~~~~g~~~~~~~LppG-~y~YkFiV   76 (323)
                      |+|+|... .   .++.++|+|+-.   +|++.  .+|...  ....|++.+.||.| ..+|||++
T Consensus         1 v~v~f~~~~~~t~~Ge~l~v~Gs~~~LG~W~~~~a~~l~~~--~~~~W~~~v~lp~~~~veyKyv~   64 (97)
T cd05810           1 VSVTFSCNNGTTQLGQSVYVVGNVPQLGNWSPADAVKLDPT--AYPTWSGSISLPASTNVEWKCLK   64 (97)
T ss_pred             CeEEEEEeecccCCCCeEEEEEChHHhCCCChhhcccccCC--CCCeEEEEEEcCCCCeEEEEEEE
Confidence            56788843 2   478999999876   89864  567654  25789999999998 59999987

Alpha-MTH, also known as maltotetraose-forming exo-amylase or G4-amylase, is an exo-amylase found in bacteria that degrades starch from its non-reducing end. Most alpha-MTHs have, in addition to the C-terminal CBM20 domain, an N-terminal glycosyl hydrolase family 13 catalytic domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio

>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase

Probab=96.76  E-value=0.0035  Score=64.10  Aligned_cols=72  Identities=19%  Similarity=0.233  Sum_probs=53.1

Q ss_pred             EEEE-eeCCCceEEEEeccCCCCCCCCCCCCCCCCCeEEEEEE-eCCceEEEEEEEcC-eeecCCCCCeeeCCCCccceE
Q 020637           23 VRFI-WPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICR-LPPGHHQYKFYVDG-EWRHDENQPHVSGNYGVVNCV   99 (323)
Q Consensus        23 v~F~-w~~~~~~V~l~Gsf~~W~~~~~m~~~~~~~g~~~~~~~-LppG~y~YkFiVDG-~w~~d~~~p~~~d~~G~~nnv   99 (323)
                      |+|+ |.+.|++|.|.+.   + ...+|++.+  +|+|+++++ +.+| +.|+|.||| ..+.||........ .+-.++
T Consensus         1 v~FrlwAP~A~~V~L~l~---~-~~~~m~k~~--~GvW~~~v~~~~~G-~~Y~y~v~g~~~v~DPya~~~~~~-~~~~S~   72 (542)
T TIGR02402         1 VRFRLWAPTAASVKLRLN---G-ALHAMQRLG--DGWFEITVPPVGPG-DRYGYVLDDGTPVPDPASRRQPDG-VHGPSQ   72 (542)
T ss_pred             CEEEEECCCCCEEEEEeC---C-CEEeCeECC--CCEEEEEECCCCCC-CEEEEEEeeeEEecCccccccccC-CCCCeE
Confidence            4675 5678999999973   3 247999875  799999997 7778 789999999 67899988765432 122355


Q ss_pred             EEe
Q 020637          100 YIA  102 (323)
Q Consensus       100 l~v  102 (323)
                      +..
T Consensus        73 V~d   75 (542)
T TIGR02402        73 VVD   75 (542)
T ss_pred             Eec
Confidence            544

Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.

>cd02853 MTHase_N_term Maltooligosyl trehalose synthase (MTSase) N-terminus domain

Probab=96.62  E-value=0.0082  Score=45.74  Aligned_cols=62  Identities=21%  Similarity=0.279  Sum_probs=45.1

Q ss_pred             EEEEe-eCCCceEEEEeccCCCCCCCCCCCCCCCCCeEEEEEEeCCceEEEEEEEc-CeeecCCCCCeee
Q 020637           23 VRFIW-PNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVD-GEWRHDENQPHVS   90 (323)
Q Consensus        23 v~F~w-~~~~~~V~l~Gsf~~W~~~~~m~~~~~~~g~~~~~~~LppG~y~YkFiVD-G~w~~d~~~p~~~   90 (323)
                      ++|+. .+.|++|.|....  |. ..+|.+.+  +|.|++++..-+|. .|+|.|+ |..+.||......
T Consensus        10 ~~F~vwAP~A~~V~l~l~~--~~-~~~m~~~~--~G~W~~~v~~~~g~-~Y~y~v~~~~~~~DP~a~~~~   73 (85)
T cd02853          10 TRFRLWAPDAKRVTLRLDD--GE-EIPMQRDG--DGWFEAEVPGAAGT-RYRYRLDDGTPVPDPASRFQP   73 (85)
T ss_pred             EEEEEeCCCCCEEEEEecC--CC-cccCccCC--CcEEEEEeCCCCCC-eEEEEECCCcCCCCCccccCC
Confidence            66775 6689999999643  53 47898765  79999998733665 4777776 4678888877543

MTSase and maltooligosyl trehalose trehalohydrolase (MTHase) work together to produce trehalose. MTSase is responsible for converting the alpha-1,4-glucosidic linkage to an alpha,alpha-1,1-glucosidic linkage at the reducing end of the maltooligosaccharide through an intramolecular transglucosylation reaction, while MTHase hydrolyzes the penultimate alpha-1,4 linkage of the reducing end, resulting in the release of trehalose. The N-terminus of MTSase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=96.44  E-value=0.0062  Score=59.20  Aligned_cols=57  Identities=18%  Similarity=0.407  Sum_probs=49.9

Q ss_pred             cccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHH
Q 020637          155 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR  215 (323)
Q Consensus       155 ~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~  215 (323)
                      .++.+.|  ...+.++.+++++.+|+.+|.+++.. +||+|+ +|+++|+||..+++..|.
T Consensus       302 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~-~~~~~g~i~~~~~~~~~~  358 (363)
T TIGR01186       302 QGLQDVL--IDDIYTVDAGTLLRETVRKVLKAGIK-VPVVDE-DQRLVGIVTRGSLVDALY  358 (363)
T ss_pred             Cchhhhh--ccCCceECCCCcHHHHHHHHHhCCCC-EEEECC-CCcEEEEEEHHHHHHHHH
Confidence            3577777  45678899999999999999999999 999995 799999999999987765

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>PRK05402 glycogen branching enzyme; Provisional

Probab=96.28  E-value=0.0078  Score=63.67  Aligned_cols=62  Identities=11%  Similarity=0.023  Sum_probs=44.8

Q ss_pred             EEEEE-eeCCCceEEEEeccCCCCCCCCCCCCCCCCCeEEEEEEeCCceEEEEEEE--cCe--eecCCCC
Q 020637           22 PVRFI-WPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYV--DGE--WRHDENQ   86 (323)
Q Consensus        22 ~v~F~-w~~~~~~V~l~Gsf~~W~~~~~m~~~~~~~g~~~~~~~LppG~y~YkFiV--DG~--w~~d~~~   86 (323)
                      -++|+ |.+.|++|.|+|+||+ ....+|++.+ ..|.|++.+++..|.. |||.|  ||.  .+.||..
T Consensus        29 g~~f~vwaP~A~~V~vvgdfn~-~~~~~m~~~~-~~G~w~~~ip~~~g~~-YKy~i~~~g~~~~k~DPya   95 (726)
T PRK05402         29 GLVVRALLPGAEEVWVILPGGG-RKLAELERLH-PRGLFAGVLPRKGPFD-YRLRVTWGGGEQLIDDPYR   95 (726)
T ss_pred             cEEEEEECCCCeEEEEEeecCC-CccccceEcC-CCceEEEEecCCCCCC-eEEEEEeCCceeEeccccc
Confidence            45565 5789999999999997 3346999754 3799999999666742 55555  785  4566653

>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase

Probab=95.96  E-value=0.014  Score=60.66  Aligned_cols=67  Identities=22%  Similarity=0.441  Sum_probs=48.9

Q ss_pred             EEEEEe-eCCCceEEEEeccCCCCCC-CCCCCCCCCCCeEEEEEE-eCCceEEEEEEEc---Ce--eecCCCCCeee
Q 020637           22 PVRFIW-PNGGRRVSLSGSFTRWSEP-MPMSPSEGCPAVFQIICR-LPPGHHQYKFYVD---GE--WRHDENQPHVS   90 (323)
Q Consensus        22 ~v~F~w-~~~~~~V~l~Gsf~~W~~~-~~m~~~~~~~g~~~~~~~-LppG~y~YkFiVD---G~--w~~d~~~p~~~   90 (323)
                      .++|+. .+.|++|.|.|+||+|... .+|.+.. ..|+|++.++ +.+|. .|+|.|+   |.  ++.||......
T Consensus        29 g~~FrvwAP~A~~V~L~~dfn~w~~~~~~m~~~~-~~Gvw~~~i~~~~~g~-~Y~y~v~~~~g~~~~~~DPYA~~~~  103 (613)
T TIGR01515        29 GTRFCVWAPNAREVRVAGDFNYWDGREHPMRRRN-DNGIWELFIPGIGEGE-LYKYEIVTNNGEIRLKADPYAFYAE  103 (613)
T ss_pred             cEEEEEECCCCCEEEEEEecCCCCCceecceEec-CCCEEEEEeCCCCCCC-EEEEEEECCCCcEEEeCCCCEeeec
Confidence            567765 6789999999999999764 5888753 2699999987 45565 5888884   54  46787665433

A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.

>cd05815 CBM20_DPE2_repeat1 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 1

Probab=95.96  E-value=0.02  Score=45.08  Aligned_cols=54  Identities=30%  Similarity=0.610  Sum_probs=40.1

Q ss_pred             EEEEeeC---CCceEEEEeccC---CCCCC--CCCCCCC-CCCCeEEEEEEeCCc-eEEEEEEE
Q 020637           23 VRFIWPN---GGRRVSLSGSFT---RWSEP--MPMSPSE-GCPAVFQIICRLPPG-HHQYKFYV   76 (323)
Q Consensus        23 v~F~w~~---~~~~V~l~Gsf~---~W~~~--~~m~~~~-~~~g~~~~~~~LppG-~y~YkFiV   76 (323)
                      ++|...+   -|++++|+|+-.   +|++.  .+|.... .....|++++.+|++ .++|||+|
T Consensus         2 l~f~i~~~t~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~~~~~~~W~~~v~~~~~~~veYky~v   65 (101)
T cd05815           2 LSFKLPYYTQWGQSLLICGSDPLLGSWNVKKGLLLKPSHQGDVLVWSGSISVPPGFSSEYNYYV   65 (101)
T ss_pred             EEEEEEEEccCCCEEEEEcChHHcCCcChHhcEeeeecCCCCCCEEEEEEEeCCCCcEEEEEEE
Confidence            5677654   489999999864   79764  5785421 123489999999987 49999999

DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 starch binding domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal carbohydrate-binding domains. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabol

>PF11806 DUF3327: Domain of unknown function (DUF3327); InterPro: IPR021764 This entry represents the N-terminal domain of enterochelin esterase

Probab=95.54  E-value=0.12  Score=42.42  Aligned_cols=81  Identities=22%  Similarity=0.359  Sum_probs=53.8

Q ss_pred             eEEEEEee----CCCceEEEEeccCCCCC-----CCCCCCCCCCCCeEEEEEEeCCc-eEEEEEEEcCe-----------
Q 020637           21 VPVRFIWP----NGGRRVSLSGSFTRWSE-----PMPMSPSEGCPAVFQIICRLPPG-HHQYKFYVDGE-----------   79 (323)
Q Consensus        21 ~~v~F~w~----~~~~~V~l~Gsf~~W~~-----~~~m~~~~~~~g~~~~~~~LppG-~y~YkFiVDG~-----------   79 (323)
                      +.|||-|+    .....+.|.|+.|+...     ...|++.++ ..+|..++.||.. +-.|+|+.+-.           
T Consensus         2 ~~VTFlWRdp~~~~~~~~~V~~~~ngvtD~~~~~~~~l~Rl~g-TDVW~~t~~lp~d~rgSY~~~p~~~~~~~~~r~~~r   80 (122)
T PF11806_consen    2 CLVTFLWRDPDEGASANVRVYGDINGVTDHHDPDPQSLQRLPG-TDVWYWTYRLPADWRGSYSFIPDVPDARGAQREWWR   80 (122)
T ss_dssp             -EEEEEEE-TSTTT----EEEEEETTTTCGGGT---BEEE-TT-SSEEEEEEEEETT-EEEEEEEEES-T-HHHHHHHHH
T ss_pred             cEEEEEEeCCCCCCCceeEEEEECCcccccccCChhhheeCCC-CceEEEEEEECcccEEEEEEEecCcccchhHHHHHH
Confidence            57999999    34577999999998853     247887764 6899999999998 68899996433           


Q ss_pred             -----eecCCCCCeee-CC---CCccceEEEe
Q 020637           80 -----WRHDENQPHVS-GN---YGVVNCVYIA  102 (323)
Q Consensus        80 -----w~~d~~~p~~~-d~---~G~~nnvl~v  102 (323)
                           -..||-||... ..   .|..-++++.
T Consensus        81 ~~l~~~~~DPlNp~~~~~~~~~~g~~~S~l~L  112 (122)
T PF11806_consen   81 AILAQAQADPLNPRPWPNGAQDRGNAASVLEL  112 (122)
T ss_dssp             HHGGG-B--TTSSSEEE-TT---SSEEEEEE-
T ss_pred             HHHhccCCCCCCCCCCCCCccccccccCceeC
Confidence                 36789888654 33   4888999998

The activity of the enzyme has been characterised [, ]. Fes catalyses the hydrolysis of the 2,3-dihydroxy-N-benzoyl-L-serine trimer, enterochelin, forming 2,3-dihydroxybenzoylserine. It also catalyses hydrolysis of free enterobactin and ferric enterobactin. Upon hydrolysis of ferric enterobactin by Fes, released iron is probably reduced by a second enzyme. Enterochelin esterase represents a family of non-peptidase homologues belonging to the MEROPS peptidase family S9, clan SC. ; GO: 0005506 iron ion binding, 0008849 enterochelin esterase activity, 0006826 iron ion transport, 0005737 cytoplasm; PDB: 3MGA_B 3C87_B 3C8H_B 3C8D_A 2B20_A.

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=95.53  E-value=0.031  Score=55.04  Aligned_cols=58  Identities=17%  Similarity=0.232  Sum_probs=48.9

Q ss_pred             ccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhh
Q 020637          156 TVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILREL  217 (323)
Q Consensus       156 ~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~  217 (323)
                      .+.+.+  ...+.++..+++|.+|+..|.+.... +||+|+ +|+++|+||..++++.|...
T Consensus       338 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~-~~~~~g~~~~~~~~~~~~~~  395 (400)
T PRK10070        338 GLDAAL--IDAPLAVDAQTPLSELLSHVGQAPCA-VPVVDE-DQQYVGIISKGMLLRALDRE  395 (400)
T ss_pred             chhhhh--ccCCceeCCCCCHHHHHHHHHhCCCc-EEEECC-CCcEEEEEEHHHHHHHHHhc
Confidence            466666  35678999999999999999998766 999995 79999999999998877643

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=95.51  E-value=0.028  Score=55.04  Aligned_cols=47  Identities=11%  Similarity=0.188  Sum_probs=39.8

Q ss_pred             CCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637          258 PRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (323)
Q Consensus       258 ~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~  312 (323)
                      ...+.++.++++|.+++..+.+.. +-+||+|+    |   +++|+|+..+|+++
T Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~----~---~~~g~~~~~~~~~~  378 (382)
T TIGR03415       332 EAAPTVINPDTLMRDVLAARHRTG-GAILLVEN----G---RIVGVIGDDNIYHA  378 (382)
T ss_pred             cccCcccCCCCcHHHHHHHHhcCC-CCeEEeeC----C---eEEEEEeHHHHHHH
Confidence            344678999999999999988866 55999973    5   89999999999876

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>PF03423 CBM_25: Carbohydrate binding domain (family 25); InterPro: IPR005085 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity

Probab=95.26  E-value=0.049  Score=41.90  Aligned_cols=61  Identities=23%  Similarity=0.480  Sum_probs=37.4

Q ss_pred             EEEEEeeC------CCceEEEEeccCCCCCC--CCCCCCC--CCCCeEEEEEEeCCceEEEEEEE-cC--eeec
Q 020637           22 PVRFIWPN------GGRRVSLSGSFTRWSEP--MPMSPSE--GCPAVFQIICRLPPGHHQYKFYV-DG--EWRH   82 (323)
Q Consensus        22 ~v~F~w~~------~~~~V~l~Gsf~~W~~~--~~m~~~~--~~~g~~~~~~~LppG~y~YkFiV-DG--~w~~   82 (323)
                      +|++.|..      ++.+|++.+.|++|...  .+|.+..  ...+.|++++.+|..-|+..|+. ||  .|-.
T Consensus         3 ~vtVyYn~~~~~l~g~~~v~~~~G~n~W~~~~~~~m~~~~~~~~~~~~~~tv~vP~~a~~~dfvF~dg~~~wDN   76 (87)
T PF03423_consen    3 TVTVYYNPSLTALSGAPNVHLHGGFNRWTHVPGFGMTKMCVPDEGGWWKATVDVPEDAYVMDFVFNDGAGNWDN   76 (87)
T ss_dssp             EEEEEE---E-SSS-S-EEEEEETTS-B-SSS-EE-EEESS---TTEEEEEEE--TTTSEEEEEEE-SSS-EES
T ss_pred             EEEEEEEeCCCCCCCCCcEEEEecCCCCCcCCCCCcceeeeeecCCEEEEEEEEcCCceEEEEEEcCCCCcEeC
Confidence            46666632      36899999999999865  3566542  12689999999999988999987 65  4533

A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM25 from CAZY which has a starch-binding function as has been demonstrated in one case.; PDB: 2LAB_A 2C3X_B 2C3V_A 2C3W_C 2LAA_A.

>cd05806 CBM20_laforin Laforin protein tyrosine phosphatase, N-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=95.10  E-value=0.35  Score=39.08  Aligned_cols=55  Identities=24%  Similarity=0.361  Sum_probs=39.9

Q ss_pred             EEEEEee----CCCceEEEEecc---CCCCCC--CCCCCCC-----CCCCeEEEEEEeCCc----eEEEEEEE
Q 020637           22 PVRFIWP----NGGRRVSLSGSF---TRWSEP--MPMSPSE-----GCPAVFQIICRLPPG----HHQYKFYV   76 (323)
Q Consensus        22 ~v~F~w~----~~~~~V~l~Gsf---~~W~~~--~~m~~~~-----~~~g~~~~~~~LppG----~y~YkFiV   76 (323)
                      .|+|...    ..+++++|+|+-   -+|+..  .+|....     .....|.+.+.||++    .++|||+.
T Consensus         2 ~~~f~~~~~~~~~gq~v~IvGsipeLG~Wd~~~Av~Ls~~~yt~~~~~~~~W~~~v~lp~~~~~~~~eYKfv~   74 (112)
T cd05806           2 LFRFGVVLTFADRDTELLVLGSRPELGSWDPQRAVPMRPARKALSPQEPSLWLGEVELSEPGSEDTFWYKFLK   74 (112)
T ss_pred             EEEEEEEEeecCCCCEEEEEECchhcCCCCcccccccccccccccCCCCCEEEEEEEcCCCCcCceEEEEEEE
Confidence            4556553    468899999984   489864  4676541     124479999999996    69999997

Laforin, encoded by the EPM2A gene, is a dual-specificity phosphatase that dephosphorylates complex carbohydrates. Mutations in the gene encoding laforin result in Lafora disease, a fatal autosomal recessive neurodegenerative disorder characterized by the presence of intracellular deposits of insoluble, abnormally branched, glycogen-like polymers, known as Lafora bodies, in neurons, muscle, liver, and other tissues. The molecular basis for the formation of these Lafora bodies is unknown. Laforin is one of the only phosphatases that contains a carbohydrate-binding module. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen

>PLN02316 synthase/transferase

Probab=94.64  E-value=0.11  Score=56.73  Aligned_cols=49  Identities=16%  Similarity=0.285  Sum_probs=41.5

Q ss_pred             CceEEEEeccCCCCCC---CCCCCCCCCCCeEEEEEEeCCceEEEEEEE-cCe
Q 020637           31 GRRVSLSGSFTRWSEP---MPMSPSEGCPAVFQIICRLPPGHHQYKFYV-DGE   79 (323)
Q Consensus        31 ~~~V~l~Gsf~~W~~~---~~m~~~~~~~g~~~~~~~LppG~y~YkFiV-DG~   79 (323)
                      ..+|.|.|-||+|.-.   .+|.|.+..++.|++++.+|++-|..-|+. ||.
T Consensus       170 ~~~v~i~~gfN~W~~~~f~~~~~k~~~~g~ww~~~v~Vp~~A~~ldfVf~~g~  222 (1036)
T PLN02316        170 EPDVLIMGAFNGWRWKSFTERLEKTELGGDWWSCKLHIPKEAYKMDFVFFNGQ  222 (1036)
T ss_pred             CCceEEEeccccccccccceeccccccCCCeEEEEEecCccceEEEEEEeCCc
Confidence            5789999999999864   377777644778999999999999999998 773

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=94.52  E-value=0.71  Score=42.87  Aligned_cols=132  Identities=11%  Similarity=0.106  Sum_probs=80.1

Q ss_pred             CCHHHHHHHHHhhhhhccccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHH---
Q 020637          136 YSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL---  212 (323)
Q Consensus       136 ~s~~~l~~~~~~~~~~l~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~---  212 (323)
                      +++..++++...+.+-++           ..+|.|..|  +.||+++--     .+.|++  .|+++=.=|...++.   
T Consensus       169 I~R~~lQ~e~~~lq~~l~-----------kTivfVTHD--idEA~kLad-----ri~vm~--~G~i~Q~~~P~~il~~Pa  228 (309)
T COG1125         169 ITRKQLQEEIKELQKELG-----------KTIVFVTHD--IDEALKLAD-----RIAVMD--AGEIVQYDTPDEILANPA  228 (309)
T ss_pred             hhHHHHHHHHHHHHHHhC-----------CEEEEEecC--HHHHHhhhc-----eEEEec--CCeEEEeCCHHHHHhCcc
Confidence            779999998888888876           456666666  889998753     467887  589988888555432   


Q ss_pred             --HHHhhcCCCCCCChhhhhhhhHHHHHHHHHHhhcccccCCCCCCCCCC---cEEeCCCCCHHHHHHHHHHcCCCEEeE
Q 020637          213 --ILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRP---LVQAGPYDSLKEVALKILQNKVATVPI  287 (323)
Q Consensus       213 --~l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~im~~~---~vtv~pd~~L~eaa~~m~~~~i~rlPV  287 (323)
                        ++..+....    +..+....+..+.+..               +...   --.+.......+++..+...+...+||
T Consensus       229 n~FV~~f~g~~----~~~~~~l~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~ls~~~~~~~~~~~V  289 (309)
T COG1125         229 NDFVEDFFGES----ERGLRLLSLVSVADAV---------------RRGEPADGEPLLEGFVDRDALSDFLARGRSVLPV  289 (309)
T ss_pred             HHHHHHHhccc----cccccccchhhHHHhh---------------cccccccCCccccchhhHHHHHHHHhcCCceeEE
Confidence              111111100    0000000111111110               1110   011223344556888899999999999


Q ss_pred             EecCCCCCCcccEEEEeeccccccc
Q 020637          288 IHSTGPAGSCQEILYLASLSDILKC  312 (323)
Q Consensus       288 vD~~~~~g~~~~lvGIIT~~dIl~~  312 (323)
                      +|+   +|   +++|.||+.+|+..
T Consensus       290 vd~---~g---~~~G~vt~~~l~~~  308 (309)
T COG1125         290 VDE---DG---RPLGTVTRADLLDE  308 (309)
T ss_pred             ECC---CC---cEeeEEEHHHHhhh
Confidence            995   46   89999999999853

>PRK11573 hypothetical protein; Provisional

Probab=94.21  E-value=0.099  Score=51.73  Aligned_cols=50  Identities=8%  Similarity=0.106  Sum_probs=45.6

Q ss_pred             CCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHH
Q 020637          165 GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR  215 (323)
Q Consensus       165 ~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~  215 (323)
                      +++..+..+.++.++++.|++++.+-+.|+|+ -|..+|+||..|++..+.
T Consensus       262 r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDE-yG~~~GiVTleDilEeiv  311 (413)
T PRK11573        262 DEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDE-YGDIQGLVTVEDILEEIV  311 (413)
T ss_pred             cCCeEeCCCCcHHHHHHHHHhcCCeEEEEEec-CCCeEEEeeHHHHHHHHh
Confidence            67888999999999999999999999999995 789999999999987553

>PLN02950 4-alpha-glucanotransferase

Probab=94.20  E-value=0.42  Score=51.88  Aligned_cols=70  Identities=20%  Similarity=0.414  Sum_probs=52.3

Q ss_pred             cCCeeeEEEEEeeC----CCceEEEEeccC---CCCCC--CCCCCCCCCCCeEEEEEEeCCc--eEEEEEEE---cC--e
Q 020637           16 VGSILVPVRFIWPN----GGRRVSLSGSFT---RWSEP--MPMSPSEGCPAVFQIICRLPPG--HHQYKFYV---DG--E   79 (323)
Q Consensus        16 ~~~~~~~v~F~w~~----~~~~V~l~Gsf~---~W~~~--~~m~~~~~~~g~~~~~~~LppG--~y~YkFiV---DG--~   79 (323)
                      .+...++|+|....    .|++|+|+|+-.   +|++.  .+|....  ...|++++.+|++  ..+|||++   +|  .
T Consensus       148 ~~~~~v~V~F~v~~~~~~~Gq~v~VvGs~~eLGnW~~~~a~~Ls~~~--~p~W~~~v~lp~~~~~~EYKyv~~~~~g~v~  225 (909)
T PLN02950        148 PAPDEIVVRFKIACPRLEEGTSVYVTGSIAQLGNWQVDDGLKLNYTG--DSIWEADCLVPKSDFPIKYKYALQTAEGLVS  225 (909)
T ss_pred             CCCCceeEEEEEecCccCCCCeEEEEechhhcCCCCcccccccccCC--CCcEEEEEEecCCCceEEEEEEEEcCCCceE
Confidence            35667889999853    489999999865   89865  4676533  6789999999988  49999998   44  4


Q ss_pred             eecCCCCC
Q 020637           80 WRHDENQP   87 (323)
Q Consensus        80 w~~d~~~p   87 (323)
                      |-..++.-
T Consensus       226 WE~g~NR~  233 (909)
T PLN02950        226 LELGVNRE  233 (909)
T ss_pred             EeeCCCce
Confidence            76555543

>TIGR02104 pulA_typeI pullulanase, type I

Probab=94.12  E-value=0.13  Score=53.37  Aligned_cols=65  Identities=17%  Similarity=0.182  Sum_probs=45.8

Q ss_pred             EEEEe-eCCCceEEEEeccCCCCC-----CCCCCCCCCCCCeEEEEEE-eCCce-EEEEEEEcCe--eecCCCCCeee
Q 020637           23 VRFIW-PNGGRRVSLSGSFTRWSE-----PMPMSPSEGCPAVFQIICR-LPPGH-HQYKFYVDGE--WRHDENQPHVS   90 (323)
Q Consensus        23 v~F~w-~~~~~~V~l~Gsf~~W~~-----~~~m~~~~~~~g~~~~~~~-LppG~-y~YkFiVDG~--w~~d~~~p~~~   90 (323)
                      ++|+. .+.|++|.|++ |++|..     .++|.+..  .|+|++.++ +.+|. |.|++..+|.  ++.||......
T Consensus        21 ~~F~vwaP~a~~V~l~~-~~~~~~~~~~~~~~m~~~~--~gvw~~~i~~~~~g~~Y~y~v~~~~~~~~~~DPya~~~~   95 (605)
T TIGR02104        21 TVFRVWAPTATEVELLL-YKSGEDGEPYKVVKMKRGE--NGVWSAVLEGDLHGYFYTYQVCINGKWRETVDPYAKAVT   95 (605)
T ss_pred             eEEEEECCCCCEEEEEE-EcCCCCCccceEEecccCC--CCEEEEEECCCCCCCEEEEEEEcCCCeEEEcCCCcceec
Confidence            67865 56899999998 888853     35888754  799999987 45553 4444444564  48888876543

Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.

>PLN02960 alpha-amylase

Probab=93.99  E-value=0.047  Score=58.22  Aligned_cols=52  Identities=29%  Similarity=0.540  Sum_probs=39.8

Q ss_pred             EEEeeCCCceEEEEeccCCCCCCC-CCC-----CCCCCCCeEEEEEE--eCCc----e---EEEEEEEc
Q 020637           24 RFIWPNGGRRVSLSGSFTRWSEPM-PMS-----PSEGCPAVFQIICR--LPPG----H---HQYKFYVD   77 (323)
Q Consensus        24 ~F~w~~~~~~V~l~Gsf~~W~~~~-~m~-----~~~~~~g~~~~~~~--LppG----~---y~YkFiVD   77 (323)
                      -..|.++|+.+.|+|+||+|+++. +|.     +++  =|+|.++++  |..|    .   -||.|..|
T Consensus       132 ~~~wap~a~~~~~~gdfn~w~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (897)
T PLN02960        132 FMEWAPGARYCSLVGDFNNWSPTENRAREGYFGHDD--FGYWFIILEDKLREGEEPDELYFQEYNYVDD  198 (897)
T ss_pred             EEEEcCCceeEEEeecccCCCcccchhhcccccccc--cceEEEEechhhhcCCCcchhhhhhhccccc
Confidence            446899999999999999999863 554     544  689999986  6666    2   36777764

>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]

Probab=93.61  E-value=0.15  Score=50.71  Aligned_cols=49  Identities=16%  Similarity=0.177  Sum_probs=45.5

Q ss_pred             CeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHH
Q 020637          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR  215 (323)
Q Consensus       166 ~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~  215 (323)
                      +++.+...+++.++++.|++++.+-+.|+|+ -|.+.|+||..|++..+.
T Consensus       280 ~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDE-yG~~~GlVTleDIiEeIv  328 (429)
T COG1253         280 PPLFVPETLSLSDLLEEFREERTHMAIVVDE-YGGVEGLVTLEDIIEEIV  328 (429)
T ss_pred             CCeEecCCCcHHHHHHHHHHhCCeEEEEEEc-CCCeEEEeEHHHHHHHHh
Confidence            8899999999999999999999999999995 699999999999998654

>PRK10439 enterobactin/ferric enterobactin esterase; Provisional

Probab=93.45  E-value=0.47  Score=46.93  Aligned_cols=86  Identities=24%  Similarity=0.328  Sum_probs=59.8

Q ss_pred             CCeeeEEEEEeeC-CC-------ceEEEE--eccC--CCCCCCCCCCCCCCCCeEEEEEEeCCc-eEEEEEEEc---C--
Q 020637           17 GSILVPVRFIWPN-GG-------RRVSLS--GSFT--RWSEPMPMSPSEGCPAVFQIICRLPPG-HHQYKFYVD---G--   78 (323)
Q Consensus        17 ~~~~~~v~F~w~~-~~-------~~V~l~--Gsf~--~W~~~~~m~~~~~~~g~~~~~~~LppG-~y~YkFiVD---G--   78 (323)
                      ....+.|||-|++ .+       +.|+|-  |..+  .+....+|++-.+ ..+|..++.||.. +-.|+|+++   +  
T Consensus        35 ~~~~~~vTFlwr~~~~~~~~~~~~~v~~~~n~~tdh~~~~~~~~l~rl~~-tDvW~~~~~~p~~~r~sY~~~~~~~~~~~  113 (411)
T PRK10439         35 DDGMVRVTFWWRDPQGDEEHSTIRRVWIYINGVTDHHQNSQPQSLQRIAG-TDVWQWSTELSANWRGSYCFIPTERDDIF  113 (411)
T ss_pred             CCCcEEEEEEeeCCCCCcccccceeEEEeCCCCCCcCccCCcchhhccCC-CceEEEEEEECcccEEEEEEEeccccccc
Confidence            4556899999986 23       358873  2222  2434457988864 7899999999998 689999982   1  


Q ss_pred             -----------------------eeecCCCCCeee-CCCCccceEEEec
Q 020637           79 -----------------------EWRHDENQPHVS-GNYGVVNCVYIAV  103 (323)
Q Consensus        79 -----------------------~w~~d~~~p~~~-d~~G~~nnvl~v~  103 (323)
                                             .-+.||.||... +..|+..|+++++
T Consensus       114 ~~~~~~~~~~~~~~r~~~~~l~~~~~~DP~N~~~~~~~~~~~~S~l~lp  162 (411)
T PRK10439        114 SAFAPAPSPDRLELREGWRKLLPQAIADPLNPQSWRGGRGHAVSALEMP  162 (411)
T ss_pred             cccccccchhHHHHHHHHHHhhccccCCCCCCCCCCCCCccccccccCC
Confidence                                   114788888654 4456556889883

>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=93.30  E-value=0.11  Score=53.20  Aligned_cols=51  Identities=18%  Similarity=0.280  Sum_probs=44.6

Q ss_pred             cccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHH
Q 020637          159 ELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL  212 (323)
Q Consensus       159 dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~  212 (323)
                      -+|+  ...+++..++++.+|+.++++-|++++.|++ +.++.+|++|..|++.
T Consensus       694 p~~n--~sPytV~~~mSl~k~~~lFR~lGLRhLlVv~-~~~~~~gilTR~D~~~  744 (762)
T KOG0474|consen  694 PFMN--PSPYTVPETMSLAKAFILFRQLGLRHLLVVP-KTNRVVGILTRKDLAR  744 (762)
T ss_pred             cccC--CCCcccCcccchHHHHHHHHHhcceeEEEec-CCCceeEEEehhhhhh
Confidence            3464  4568899999999999999999999999998 5788899999999964

>PLN02950 4-alpha-glucanotransferase

Probab=93.27  E-value=0.67  Score=50.35  Aligned_cols=60  Identities=27%  Similarity=0.486  Sum_probs=45.3

Q ss_pred             CCeeeEEEEEeeC---CCceEEEEeccC---CCCCC--CCCCCCC-CCCCeEEEEEEeCCc-eEEEEEEE
Q 020637           17 GSILVPVRFIWPN---GGRRVSLSGSFT---RWSEP--MPMSPSE-GCPAVFQIICRLPPG-HHQYKFYV   76 (323)
Q Consensus        17 ~~~~~~v~F~w~~---~~~~V~l~Gsf~---~W~~~--~~m~~~~-~~~g~~~~~~~LppG-~y~YkFiV   76 (323)
                      ....+.++|..++   -|++|+|+|+-.   +|+..  .+|.... .....|++++.||+| ..+|||++
T Consensus         5 ~~~~V~V~F~i~y~T~~GQ~l~VvGs~~~LG~Wd~~kA~~Ls~~~~~d~~~W~~~v~lp~~~~ieYKYv~   74 (909)
T PLN02950          5 SLKSVTLSFRIPYYTQWGQSLLVCGSEPLLGSWNVKKGLLLSPVHQGDELVWEGSVSVPEGFSCEYSYYV   74 (909)
T ss_pred             CCCcEEEEEEeEEecCCCCeEEEEecchhcCCCCcccceecccccCCCCCeEEEEEEecCCCeEEEEEEE
Confidence            4556788888874   389999999875   78864  5786432 113489999999997 59999995

>PLN02316 synthase/transferase

Probab=92.40  E-value=0.63  Score=51.04  Aligned_cols=59  Identities=14%  Similarity=0.287  Sum_probs=43.9

Q ss_pred             eEEEEEeeC------CCceEEEEeccCCCCCCC----CCCCCC-CCCCeEEEEEEeCCceEEEEEEE-cCe
Q 020637           21 VPVRFIWPN------GGRRVSLSGSFTRWSEPM----PMSPSE-GCPAVFQIICRLPPGHHQYKFYV-DGE   79 (323)
Q Consensus        21 ~~v~F~w~~------~~~~V~l~Gsf~~W~~~~----~m~~~~-~~~g~~~~~~~LppG~y~YkFiV-DG~   79 (323)
                      -++++.|+.      ++.+|++.|.||+|....    .|.+.+ +.++.|.+++.+|+.-|-.-|+. ||.
T Consensus       329 ~~v~lyYN~~~~~L~~~~~v~i~gg~N~W~~~~~~~~~~~~~~~~~g~ww~a~v~vP~~A~~mDfVFsdg~  399 (1036)
T PLN02316        329 DTVKLYYNRSSGPLAHSTEIWIHGGYNNWIDGLSIVEKLVKSEEKDGDWWYAEVVVPERALVLDWVFADGP  399 (1036)
T ss_pred             CEEEEEECCCCCCCCCCCcEEEEEeEcCCCCCCcccceeecccCCCCCEEEEEEecCCCceEEEEEEecCC
Confidence            356777762      358999999999998632    233332 23568999999999999999997 773

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=92.33  E-value=0.14  Score=48.65  Aligned_cols=109  Identities=17%  Similarity=0.213  Sum_probs=77.2

Q ss_pred             cccccccccCCCCCeEEE-ecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhh
Q 020637          153 STHTVYELLPDSGKVTAL-DVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELET  231 (323)
Q Consensus       153 ~~~~~~dvmp~s~~vv~v-d~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~  231 (323)
                      +-.+..++|-. .+..+. .....-..|.+.+...+...+-+++ ..++++|+++..+.+..                  
T Consensus       272 ~VltA~~IM~~-~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~-~~~~~~g~v~~~~~~~~------------------  331 (386)
T COG4175         272 RVLTAKDIMRR-PDLLIRKTPGDGPRVALKLLRDEGREYGYAVD-RGNKFVGVVSIDSLVKA------------------  331 (386)
T ss_pred             heeeHHHhhcc-cccccccccccccchhhhhhhhccchhhHHHh-ccCceeeEEeccchhcc------------------
Confidence            34567778853 222211 1222335688888888888888887 57789999987665310                  


Q ss_pred             hhHHHHHHHHHHhhcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeecccccc
Q 020637          232 HTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (323)
Q Consensus       232 ~~i~~~~~~~~~~~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~  311 (323)
                                              .+.+++.++.+++++.+.+..+.+.. .-+||+|+   .+   +++|+|+...++.
T Consensus       332 ------------------------~~~~~~~~v~~d~~~~~~~~~~~~~~-~p~aVvde---~~---r~vG~i~~~~vl~  380 (386)
T COG4175         332 ------------------------ALIDDVLTVDADTPLSEILARIRQAP-CPVAVVDE---DG---RYVGIISRGELLE  380 (386)
T ss_pred             ------------------------cccccccccCccchHHHHHHHHhcCC-CceeEEcC---CC---cEEEEecHHHHHH
Confidence                                    14566788999999999998877665 56899985   35   8999999999988


Q ss_pred             c
Q 020637          312 C  312 (323)
Q Consensus       312 ~  312 (323)
                      +
T Consensus       381 a  381 (386)
T COG4175         381 A  381 (386)
T ss_pred             H
Confidence            7

>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX

Probab=91.55  E-value=0.47  Score=50.04  Aligned_cols=55  Identities=22%  Similarity=0.441  Sum_probs=40.0

Q ss_pred             EEEEEe-eCCCceEEEEeccCCCCC----CCCCCCCCCCCCeEEEEEE-eCCceEEEEEEEcCee
Q 020637           22 PVRFIW-PNGGRRVSLSGSFTRWSE----PMPMSPSEGCPAVFQIICR-LPPGHHQYKFYVDGEW   80 (323)
Q Consensus        22 ~v~F~w-~~~~~~V~l~Gsf~~W~~----~~~m~~~~~~~g~~~~~~~-LppG~y~YkFiVDG~w   80 (323)
                      .++|+. .+.|++|.|+ -|++|..    ..+|.+..  .|+|.+.++ +.+|. .|+|.|+|.|
T Consensus        15 g~~F~vwap~A~~V~L~-l~~~~~~~~~~~~~m~~~~--~gvW~~~v~~~~~g~-~Y~yrv~g~~   75 (688)
T TIGR02100        15 GVNFALFSANAEKVELC-LFDAQGEKEEARLPLPERT--DDIWHGYLPGAQPGQ-LYGYRVHGPY   75 (688)
T ss_pred             cEEEEEECCCCCEEEEE-EEcCCCCceeeEEecccCC--CCEEEEEECCCCCCC-EEEEEEeeee
Confidence            467866 5679999986 4555432    35787754  799999996 67776 4999999843

This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.

>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive

Probab=90.19  E-value=0.6  Score=51.64  Aligned_cols=65  Identities=11%  Similarity=0.128  Sum_probs=47.1

Q ss_pred             EEEEe-eCCCceEEEEe-ccCCCCC---CCCCCCCCCCCCeEEEEEE-eCCc-----eEEEEEEEcC----eeecCCCCC
Q 020637           23 VRFIW-PNGGRRVSLSG-SFTRWSE---PMPMSPSEGCPAVFQIICR-LPPG-----HHQYKFYVDG----EWRHDENQP   87 (323)
Q Consensus        23 v~F~w-~~~~~~V~l~G-sf~~W~~---~~~m~~~~~~~g~~~~~~~-LppG-----~y~YkFiVDG----~w~~d~~~p   87 (323)
                      ++|+. .+.|++|.|++ ++++|..   .++|.+..  .|+|++.++ +.+|     -+.|+|.|++    +.+.||...
T Consensus       329 v~F~vWAP~A~~V~L~lyd~~~~~~~~~~~~m~~~~--~GvW~v~v~~~~~G~~d~~G~~Y~Y~V~~~~~~~~~~DPYA~  406 (1111)
T TIGR02102       329 VTLKLWSPSADHVSVVLYDKDDQDKVVGTVELKKGD--RGVWEVQLTKENTGIDSLTGYYYHYEITRGGDKVLALDPYAK  406 (1111)
T ss_pred             EEEEEECCCCCEEEEEEEeCCCCCCceeeEecccCC--CCEEEEEECCcccCcccCCCceEEEEEECCCceEEEeChhhe
Confidence            66754 67899999997 4556653   46898754  799999987 4443     4788888876    457888765


Q ss_pred             ee
Q 020637           88 HV   89 (323)
Q Consensus        88 ~~   89 (323)
                      .+
T Consensus       407 al  408 (1111)
T TIGR02102       407 SL  408 (1111)
T ss_pred             EE
Confidence            43

Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).

>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]

Probab=89.24  E-value=0.44  Score=46.57  Aligned_cols=55  Identities=24%  Similarity=0.320  Sum_probs=47.2

Q ss_pred             ccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHH
Q 020637          156 TVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILI  213 (323)
Q Consensus       156 ~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~  213 (323)
                      -+.|+|.  .+.++...+.++++|=++|.++.-..+||+|+ .+.+|-||+.+|+.+.
T Consensus       172 ~~~~vmt--~~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~-~gelva~~~rtDl~k~  226 (503)
T KOG2550|consen  172 LVSDVMT--KNPVTGAQGITLKEANEILKKIKKGKLPVVDD-KGELVAMLSRTDLMKN  226 (503)
T ss_pred             hhhhhcc--cccccccccccHHHHHHHHHhhhcCCcceecc-CCceeeeeehhhhhhh
Confidence            3556773  44588888999999999999999999999995 8999999999999764

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=88.22  E-value=0.91  Score=44.49  Aligned_cols=47  Identities=19%  Similarity=0.253  Sum_probs=40.1

Q ss_pred             CeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHH
Q 020637          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR  215 (323)
Q Consensus       166 ~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~  215 (323)
                      .+.++.+++++.+++..+.+.+. .+||+| + |+++|+|+..+++..|.
T Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~-~-~~~~g~~~~~~~~~~~~  380 (382)
T TIGR03415       334 APTVINPDTLMRDVLAARHRTGG-AILLVE-N-GRIVGVIGDDNIYHALL  380 (382)
T ss_pred             cCcccCCCCcHHHHHHHHhcCCC-CeEEee-C-CeEEEEEeHHHHHHHHh
Confidence            56788999999999999998774 588888 3 89999999999987664

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>cd02857 CD_pullulan_degrading_enzymes_N_term CD and pullulan-degrading enzymes N-terminus domain

Probab=87.83  E-value=2  Score=33.96  Aligned_cols=58  Identities=17%  Similarity=0.155  Sum_probs=37.9

Q ss_pred             eeeEEEEEeeC-CCceEEEEeccCC--CC-CCCCCCCCCCCC--CeEEEEEEeCCceEEEEEEE
Q 020637           19 ILVPVRFIWPN-GGRRVSLSGSFTR--WS-EPMPMSPSEGCP--AVFQIICRLPPGHHQYKFYV   76 (323)
Q Consensus        19 ~~~~v~F~w~~-~~~~V~l~Gsf~~--W~-~~~~m~~~~~~~--g~~~~~~~LppG~y~YkFiV   76 (323)
                      ..+.++++-.. ..++|.|.-.-+.  |. ...+|.+....+  ..|++++.++.|.+.|.|.|
T Consensus        16 ~~v~irlr~~~~~v~~v~l~~~~~~~~~~~~~~~M~~~~~~~~~~~~~~~i~~~~~~~~Y~F~l   79 (116)
T cd02857          16 DTLHIRLRTKKGDVAKVYLRYGDPYDKGEEEEVPMRKDGSDELFDYWEATLPPPTGRLRYYFEL   79 (116)
T ss_pred             CEEEEEEEecCCCccEEEEEEECCCCCCCceEEEEEEeeeCCceeEEEEEEecCCcEEEEEEEE
Confidence            44555555443 4678888644332  22 246898765222  35999999888999999999

Members of this subgroup include: Cyclomaltodextrinase (CDase), maltogenic amylase, and neopullulanase all of which are capable of hydrolyzing all or two of the following three types of substrates: cyclomaltodextrins (CDs), pullulan, and starch. These enzymes hydrolyze CDs and starch to maltose and pullulan to panose by cleavage of alpha-1,4 glycosidic bonds whereas alpha-amylases essentially lack activity on CDs and pullulan. They also catalyze transglycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. The N-terminus of the CD and pullulan-degrading enzymes may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of

>PRK03705 glycogen debranching enzyme; Provisional

Probab=87.64  E-value=1  Score=47.34  Aligned_cols=54  Identities=20%  Similarity=0.335  Sum_probs=39.8

Q ss_pred             EEEEEe-eCCCceEEEEeccCCCC--CCCCCCCCCCCCCeEEEEEE-eCCceEEEEEEEcCe
Q 020637           22 PVRFIW-PNGGRRVSLSGSFTRWS--EPMPMSPSEGCPAVFQIICR-LPPGHHQYKFYVDGE   79 (323)
Q Consensus        22 ~v~F~w-~~~~~~V~l~Gsf~~W~--~~~~m~~~~~~~g~~~~~~~-LppG~y~YkFiVDG~   79 (323)
                      -++|+. .+.|++|.|+. |+++.  ...+|.+..  .|+|++.++ +.+|. .|+|.|+|.
T Consensus        20 g~~F~vwAP~A~~V~L~l-~~~~~~~~~~~m~~~~--~gvW~~~v~~~~~G~-~Y~yrv~g~   77 (658)
T PRK03705         20 GVNFTLFSAHAERVELCV-FDENGQEQRYDLPARS--GDIWHGYLPGARPGL-RYGYRVHGP   77 (658)
T ss_pred             CEEEEEECCCCCEEEEEE-EcCCCCeeeEeeeecc--CCEEEEEECCCCCCC-EEEEEEccc
Confidence            367865 56799999997 76653  235887654  789999987 55664 599999884

>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type

Probab=86.36  E-value=2.7  Score=45.62  Aligned_cols=67  Identities=21%  Similarity=0.285  Sum_probs=45.4

Q ss_pred             EEEEE-eeCCCceEEEEeccCCCC--CCCCCCCCCCCCCeEEEEEE-eCCceEEEEEEEc------Ce----eecCCCCC
Q 020637           22 PVRFI-WPNGGRRVSLSGSFTRWS--EPMPMSPSEGCPAVFQIICR-LPPGHHQYKFYVD------GE----WRHDENQP   87 (323)
Q Consensus        22 ~v~F~-w~~~~~~V~l~Gsf~~W~--~~~~m~~~~~~~g~~~~~~~-LppG~y~YkFiVD------G~----w~~d~~~p   87 (323)
                      .++|+ |.+.|++|.|++..++|.  ...+|.+.+ ..|+|++.++ ...|. .|+|.|+      |.    .+.||...
T Consensus       136 gv~FrVWAPtA~~V~L~Ly~~~~~~~~~~~M~~~~-~~GVWsv~v~g~~~G~-~Y~Y~V~v~~p~~G~v~~~~v~DPYA~  213 (898)
T TIGR02103       136 GVTFRLWAPTAQQVKLHIYSASKKVETTLPMTRDS-TSGVWSAEGGSSWKGA-YYRYEVTVYHPSTGKVETYLVTDPYSV  213 (898)
T ss_pred             cEEEEEECCCCCEEEEEEEcCCCCccceEeCccCC-CCCEEEEEECcCCCCC-EeEEEEEEecCCCCeECCeEEeCcCcc
Confidence            46675 567899999997666653  236898763 2699999986 44554 3667665      53    36788765


Q ss_pred             eee
Q 020637           88 HVS   90 (323)
Q Consensus        88 ~~~   90 (323)
                      ...
T Consensus       214 als  216 (898)
T TIGR02103       214 SLS  216 (898)
T ss_pred             eEc
Confidence            543

Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=85.05  E-value=1.4  Score=40.87  Aligned_cols=38  Identities=21%  Similarity=0.469  Sum_probs=33.1

Q ss_pred             hhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHH
Q 020637          174 LAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL  212 (323)
Q Consensus       174 ~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~  212 (323)
                      ..-.+|+.-+...+...+||+|+ +|+++|.||..|+++
T Consensus       270 ~~~~~~ls~~~~~~~~~~~Vvd~-~g~~~G~vt~~~l~~  307 (309)
T COG1125         270 FVDRDALSDFLARGRSVLPVVDE-DGRPLGTVTRADLLD  307 (309)
T ss_pred             hhhHHHHHHHHhcCCceeEEECC-CCcEeeEEEHHHHhh
Confidence            34566888999999999999995 899999999999865

>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]

Probab=84.91  E-value=0.35  Score=44.04  Aligned_cols=52  Identities=13%  Similarity=0.164  Sum_probs=46.3

Q ss_pred             CCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637          256 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (323)
Q Consensus       256 im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~  312 (323)
                      +.++..+++.-+.+|.++...|++....|.||+.++ . .   .+.||+-.+|+|++
T Consensus        74 IPRSQM~~l~~~~~l~~~l~~iiesaHSRfPVi~ed-k-D---~v~GIL~AKDLL~~  125 (293)
T COG4535          74 IPRSQMITLKRNQTLDECLDVIIESAHSRFPVISED-K-D---HVEGILLAKDLLPF  125 (293)
T ss_pred             ccHHHheeccccCCHHHHHHHHHHhccccCCcccCC-c-h---hhhhhhhHHHHHHH
Confidence            457788999999999999999999999999999752 2 2   79999999999998

>PF01357 Pollen_allerg_1: Pollen allergen; InterPro: IPR007117 Expansins are unusual proteins that mediate cell wall extension in plants []

Probab=84.77  E-value=2.9  Score=31.63  Aligned_cols=61  Identities=26%  Similarity=0.333  Sum_probs=41.8

Q ss_pred             CCeeeEEEEEeeCCC---ceEEEEecc-CCCCCCCCCCCCCCCCCeEEEEEEeCCceEEEEEEE-c-Ceeec
Q 020637           17 GSILVPVRFIWPNGG---RRVSLSGSF-TRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYV-D-GEWRH   82 (323)
Q Consensus        17 ~~~~~~v~F~w~~~~---~~V~l~Gsf-~~W~~~~~m~~~~~~~g~~~~~~~LppG~y~YkFiV-D-G~w~~   82 (323)
                      .+....+.+.+.+++   ..|.|.++= .+|   .+|++.-  ...|.+.-.++.|-+.+|+.. | |++..
T Consensus        10 ~~~~l~v~v~n~gG~gdi~~Vevk~~~s~~W---~~m~r~w--Ga~W~~~~~~~~~pls~Rvts~~~G~~vv   76 (82)
T PF01357_consen   10 NPYYLAVLVKNVGGDGDIKAVEVKQSGSGNW---IPMKRSW--GAVWQIDSNPPGGPLSFRVTSGDSGQTVV   76 (82)
T ss_dssp             BTTEEEEEEEECCTTS-EEEEEEEETTSSS----EE-EEEC--TTEEEEE-SS--SSEEEEEEETTTSEEEE
T ss_pred             CCcEEEEEEEEcCCCccEEEEEEEeCCCCCc---eEeecCc--CceEEECCCCcCCCEEEEEEEcCCCeEEE
Confidence            466677777777543   689998444 468   5898875  579999887777889999988 7 87765

They are believed to act as a sort of chemical grease, allowing polymers to slide past one another by disrupting non-covalent hydrogen bonds that hold many wall polymers to one another. This process is not degradative and hence does not weaken the wall, which could otherwise rupture under internal pressure during growth. Sequence comparisons indicate at least four distinct expansin cDNAs in rice and at least six in Arabidopsis. The proteins are highly conserved in size and sequence (75-95% amino acid sequence similarity between any pairwise comparison), and phylogenetic trees indicate that this multigene family formed before the evolutionary divergence of monocotyledons and dicotyledons []. Sequence and motif analyses show no similarities to known functional domains that might account for expansin action on wall extension. It is thought that several highly-conserved tryptophans may function in expansin binding to cellulose, or other glycans. The high conservation of the family indicates that the mechanism by which expansins promote wall extensin tolerates little variation in protein structure. Grass pollens, such as pollen from timothy grass, represent a major cause of type I allergy []. Interestingly, expansins share a high degree of sequence similarity with the Lol p I family of allergens. This entry represents the C-terminal domain.; PDB: 2VXQ_A 1WHP_A 1BMW_A 1WHO_A 2HCZ_X 2JNZ_A 3FT9_A 3FT1_C 1N10_B.

>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]

Probab=81.96  E-value=1.6  Score=45.64  Aligned_cols=45  Identities=24%  Similarity=0.402  Sum_probs=32.6

Q ss_pred             CCeeeEEEEE-eeCCCceEEEEeccCCCCCCC-CCC-CCCCCCCeEEEEEE
Q 020637           17 GSILVPVRFI-WPNGGRRVSLSGSFTRWSEPM-PMS-PSEGCPAVFQIICR   64 (323)
Q Consensus        17 ~~~~~~v~F~-w~~~~~~V~l~Gsf~~W~~~~-~m~-~~~~~~g~~~~~~~   64 (323)
                      ++..+ |+|+ |.+.++.|.++|+||+|+... .|. +++  .|.|++.++
T Consensus       110 ~~d~~-v~~~ewaP~a~~~s~~gd~n~W~~~~~~~~~k~~--~g~w~i~l~  157 (757)
T KOG0470|consen  110 TPDGR-VDFTEWAPLAEAVSLIGDFNNWNPSSNELKPKDD--LGVWEIDLP  157 (757)
T ss_pred             cCCCc-eeeeeecccccccccccccCCCCCcccccCcccc--cceeEEecC
Confidence            44444 5554 667899999999999999852 444 433  789988876

>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=81.12  E-value=1.1  Score=46.96  Aligned_cols=59  Identities=8%  Similarity=0.060  Sum_probs=50.1

Q ss_pred             CCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc--ccc
Q 020637          253 NGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC--KHF  315 (323)
Q Consensus       253 ~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~--~~f  315 (323)
                      +.++|-+++.++..+.+..|.-+.+....++-+|+||+ .++.   -|+|.+.++.+.+.  +|+
T Consensus       590 VE~iMV~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s-~esm---iLlGSV~R~~L~~ll~~~i  650 (931)
T KOG0476|consen  590 VEHIMVTDVKYITKDTTYRELREALQTTTLRSFPLVES-KESM---ILLGSVARRYLTALLQRHI  650 (931)
T ss_pred             eeeeccccceeeeccCcHHHHHHHHHhCccceeccccC-cccc---eeeehhHHHHHHHHHHhhc
Confidence            34689999999999999999998888777999999997 2333   79999999999888  554

>PLN03244 alpha-amylase; Provisional

Probab=80.44  E-value=1.9  Score=45.90  Aligned_cols=46  Identities=24%  Similarity=0.420  Sum_probs=35.7

Q ss_pred             eEEEEEeeCCCceEEEEeccCCCCCCCC------CCCCCCCCCeEEEEEE--eCCc
Q 020637           21 VPVRFIWPNGGRRVSLSGSFTRWSEPMP------MSPSEGCPAVFQIICR--LPPG   68 (323)
Q Consensus        21 ~~v~F~w~~~~~~V~l~Gsf~~W~~~~~------m~~~~~~~g~~~~~~~--LppG   68 (323)
                      .-.--.|.+||.--.|+|+||+|.++..      |.+++  =|+|.+.++  |..|
T Consensus       132 ~~~~~ewapga~~~~~~gdfn~w~~~~~~~r~~~~~~~~--~g~~~~~~~~~~~~~  185 (872)
T PLN03244        132 RVDFMDWAPGARYCAIIGDFNGWSPTENAAREGHFGHDD--YGYWFIILEDKLREG  185 (872)
T ss_pred             CceeEeecCCcceeeeeccccCCCccccccccccccccc--cceEEEEechhhhcC
Confidence            3445579999999999999999998632      44554  689999986  6666

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	323
2v8q_E	330	Crystal Structure Of The Regulatory Fragment Of Mam		8e-16
1z0m_A	96	The Glycogen-Binding Domain Of The Amp-Activated Pr		4e-14
1z0n_A	96	The Glycogen-Binding Domain Of The Amp-Activated Pr		9e-14
2f15_A	96	Glycogen-Binding Domain Of The Amp-Activated Protei		1e-12
2qlv_B	252	Crystal Structure Of The Heterotrimer Core Of The S		3e-11
3t4n_C	323	Structure Of The Regulatory Fragment Of Saccharomyc		7e-11
2qlv_C	315	Crystal Structure Of The Heterotrimer Core Of The S		8e-11
2qr1_G	334	Crystal Structure Of The Adenylate Sensor From Amp-		5e-09
2oox_G	333	Crystal Structure Of The Adenylate Sensor From Amp-		5e-09
3nme_A	294	Structure Of A Plant Phosphatase Length = 294		2e-06

>pdb|2V8Q|E Chain E, Crystal Structure Of The Regulatory Fragment Of Mammalian Ampk In Complexes With Amp Length = 330

Iteration: 1
 Score = 81.3 bits (199), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 48/140 (34%), Positives = 71/140 (50%), Gaps = 13/140 (9%)
Query: 149 SSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSAL 208
           ++F+ +H  Y+L+P S K+   D +L VK+AF  L   G+   PLWD  K  FVG+L+  
Sbjct: 29  TTFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTIT 88
Query: 209 DFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYD 268
           DFI IL       + +   ELE H I  W+   LQ + K            PLV   P  
Sbjct: 89  DFINILHRY-YKSALVQIYELEEHKIETWREVYLQDSFK------------PLVCISPNA 135
Query: 269 SLKEVALKILQNKVATVPII 288
           SL +    +++NK+  +P+I
Sbjct: 136 SLFDAVSSLIRNKIHRLPVI 155

>pdb|1Z0M|A Chain A, The Glycogen-Binding Domain Of The Amp-Activated Protein Kinase Beta1 Subunit Length = 96

Iteration: 1
 Score = 75.5 bits (184), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 39/87 (44%), Positives = 52/87 (59%), Gaps = 5/87 (5%)
Query: 22  PVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWR 81
           P  F W  GG+ V LSGSF  WS+ +P++ S+     F  I  LP G HQYKF+VDG+W 
Sbjct: 12  PTVFRWTGGGKEVYLSGSFNNWSK-LPLTRSQNN---FVAILDLPEGEHQYKFFVDGQWT 67
Query: 82  HDENQPHVSGNYGVVNCVYIAVPQPDM 108
           HD ++P V+   G VN + I V + D 
Sbjct: 68  HDPSEPIVTSQLGTVNNI-IQVKKTDF 93

>pdb|1Z0N|A Chain A, The Glycogen-Binding Domain Of The Amp-Activated Protein Kinase Length = 96

Iteration: 1
 Score = 74.3 bits (181), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 39/87 (44%), Positives = 51/87 (58%), Gaps = 5/87 (5%)
Query: 22  PVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWR 81
           P  F W  GG+ V LSGSF  WS+ +P + S+     F  I  LP G HQYKF+VDG+W 
Sbjct: 12  PTVFRWTGGGKEVYLSGSFNNWSK-LPXTRSQNN---FVAILDLPEGEHQYKFFVDGQWT 67
Query: 82  HDENQPHVSGNYGVVNCVYIAVPQPDM 108
           HD ++P V+   G VN + I V + D 
Sbjct: 68  HDPSEPIVTSQLGTVNNI-IQVKKTDF 93

>pdb|2F15|A Chain A, Glycogen-Binding Domain Of The Amp-Activated Protein Kinase Beta2 Subunit Length = 96

Iteration: 1
 Score = 70.5 bits (171), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 36/87 (41%), Positives = 48/87 (55%), Gaps = 4/87 (4%)
Query: 22  PVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWR 81
           P    W  GG+ V +SGSF  WS  +P+  S      F  I  LP G HQYKF+VDG+W 
Sbjct: 11  PTVIRWSEGGKEVFISGSFNNWSTKIPLIKSHND---FVAILDLPEGEHQYKFFVDGQWV 67
Query: 82  HDENQPHVSGNYGVVNCVYIAVPQPDM 108
           HD ++P V+   G +N + I V + D 
Sbjct: 68  HDPSEPVVTSQLGTINNL-IHVKKSDF 93

>pdb|2QLV|B Chain B, Crystal Structure Of The Heterotrimer Core Of The S. Cerevisiae Ampk Homolog Snf1 Length = 252

Iteration: 1
 Score = 65.9 bits (159), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 46/130 (35%), Positives = 66/130 (50%), Gaps = 9/130 (6%)
Query: 18  SILVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVD 77
           S++VPV   W  GG +V ++GSFT+W + + + P       F +  RL PG H+++F VD
Sbjct: 1   SLMVPVEIRWQQGGSKVYVTGSFTKWRKMIGLIPDSDNNGSFHVKLRLLPGTHRFRFIVD 60
Query: 78  GEWRHDENQPHVSGNYG-VVNCVYIAVPQPDMVPNTISPETSGNMEVDDVVMRPEGFAQY 136
            E R  +  P  +   G  VN  YI V QP+  P     E   + E D   MRP    + 
Sbjct: 61  NELRVSDFLPTATDQMGNFVN--YIEVRQPEKNPTN---EKIRSKEADS--MRPPTSDRS 113
Query: 137 SEADLQLSRD 146
           S A LQ+ +D
Sbjct: 114 SIA-LQIGKD 122

>pdb|3T4N|C Chain C, Structure Of The Regulatory Fragment Of Saccharomyces Cerevisiae Ampk In Complex With Adp Length = 323

Iteration: 1
 Score = 64.7 bits (156), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 79/156 (50%), Gaps = 30/156 (19%)
Query: 142 QLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRF 201
           QL+ + I  FL++ T Y++LP S ++  LD +L VK++ +VL +  +   PLWD    RF
Sbjct: 17  QLAVESIRKFLNSKTSYDVLPVSYRLIVLDTSLLVKKSLNVLLQNSIVSAPLWDSKTSRF 76
Query: 202 VGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQL----NLKR-----QMDG 252
            G+L+  DFI +++   +N       EL         V KLQL    +++R     Q+D 
Sbjct: 77  AGLLTTTDFINVIQYYFSNPDKF---EL---------VDKLQLDGLKDIERALGVDQLDT 124
Query: 253 NGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPII 288
                 RPL +A          LK+L+++   +P+I
Sbjct: 125 ASIHPSRPLFEA---------CLKMLESRSGRIPLI 151

>pdb|2QLV|C Chain C, Crystal Structure Of The Heterotrimer Core Of The S. Cerevisiae Ampk Homolog Snf1 Length = 315

Iteration: 1
 Score = 64.3 bits (155), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 79/156 (50%), Gaps = 30/156 (19%)
Query: 142 QLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRF 201
           QL+ + I  FL++ T Y++LP S ++  LD +L VK++ +VL +  +   PLWD    RF
Sbjct: 10  QLAVESIRKFLNSKTSYDVLPVSYRLIVLDTSLLVKKSLNVLLQNSIVSAPLWDSKTSRF 69
Query: 202 VGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQL----NLKR-----QMDG 252
            G+L+  DFI +++   +N       EL         V KLQL    +++R     Q+D 
Sbjct: 70  AGLLTTTDFINVIQYYFSNPDKF---EL---------VDKLQLDGLKDIERALGVDQLDT 117
Query: 253 NGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPII 288
                 RPL +A          LK+L+++   +P+I
Sbjct: 118 ASIHPSRPLFEA---------CLKMLESRSGRIPLI 144

>pdb|2QR1|G Chain G, Crystal Structure Of The Adenylate Sensor From Amp-Activated Protein Kinase In Complex With Adp Length = 334

Iteration: 1
 Score = 58.5 bits (140), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 70/149 (46%), Gaps = 9/149 (6%)
Query: 148 ISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSA 207
           I +F+ + T Y++LP S ++   DV L VK +  +L    +   PLWD    +F G+L+ 
Sbjct: 15  IQAFIRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTM 74
Query: 208 LDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPY 267
            DF+ +++      S+  E        +  ++ K +L   R+++      P   +   P 
Sbjct: 75  ADFVNVIKYY-YQSSSFPE--------AIAEIDKFRLLGLREVERKIGAIPPETIYVHPM 125
Query: 268 DSLKEVALKILQNKVATVPIIHSTGPAGS 296
            SL +  L + +++   +P+I   G  GS
Sbjct: 126 HSLMDACLAMSKSRARRIPLIDVDGETGS 154

>pdb|2OOX|G Chain G, Crystal Structure Of The Adenylate Sensor From Amp-activated Protein Kinase Complexed With Amp Length = 333

Iteration: 1
 Score = 58.5 bits (140), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 70/149 (46%), Gaps = 9/149 (6%)
Query: 148 ISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSA 207
           I +F+ + T Y++LP S ++   DV L VK +  +L    +   PLWD    +F G+L+ 
Sbjct: 14  IQAFIRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTM 73
Query: 208 LDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPY 267
            DF+ +++      S+  E        +  ++ K +L   R+++      P   +   P 
Sbjct: 74  ADFVNVIKYY-YQSSSFPE--------AIAEIDKFRLLGLREVERKIGAIPPETIYVHPM 124
Query: 268 DSLKEVALKILQNKVATVPIIHSTGPAGS 296
            SL +  L + +++   +P+I   G  GS
Sbjct: 125 HSLMDACLAMSKSRARRIPLIDVDGETGS 153

>pdb|3NME|A Chain A, Structure Of A Plant Phosphatase Length = 294

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 44/92 (47%), Gaps = 4/92 (4%)
Query: 29  NGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICR-LPPGHHQYKFYVDGEWRHDENQP 87
            G  RV +SG    W + +P++  +G    F I+ R LP G  +YK+ +DGEW H+E +P
Sbjct: 179 KGFSRVEISGLDIGWGQRIPLTLGKGTG--FWILKRELPEGQFEYKYIIDGEWTHNEAEP 236
Query: 88  HVSGNY-GVVNCVYIAVPQPDMVPNTISPETS 118
            +  N  G  N     V  P  V  T     S
Sbjct: 237 FIGPNKDGHTNNYAKVVDDPTSVDGTTRERLS 268

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	323
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	2e-36
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	3e-04
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	1e-29
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	4e-06
2qlv_B	252	Protein SIP2, protein SPM2; heterotrimer, ATP-bind	2e-29
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	6e-29
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	1e-05
1z0n_A	96	5'-AMP-activated protein kinase, beta-1 subunit; b	1e-25
3nme_A	294	Ptpkis1 protein, SEX4 glucan phosphatase; dual spe	1e-25
4aee_A	696	Alpha amylase, catalytic region; hydrolase, hypert	1e-11
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	5e-10
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	4e-06
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	9e-06
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	2e-05
3ddj_A	296	CBS domain-containing protein; structural genomics	6e-05
3ddj_A	296	CBS domain-containing protein; structural genomics	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-05
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	1e-04
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	2e-04
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	5e-04

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G* Length = 334

 Score =  132 bits (334), Expect = 2e-36
 Identities = 38/178 (21%), Positives = 78/178 (43%), Gaps = 12/178 (6%)

Query: 138 EADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDF 197
           +   + +   I +F+ + T Y++LP S ++   DV L VK +  +L    +   PLWD  
Sbjct: 5   QETQKGALKEIQAFIRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSE 64

Query: 198 KGRFVGVLSALDFILILRELGTNGSNLTE-EELETHTISAWKVGKLQLNLKRQMDGNGRP 256
             +F G+L+  DF+ +++    + S      E++   +   +  + ++            
Sbjct: 65  ANKFAGLLTMADFVNVIKYYYQSSSFPEAIAEIDKFRLLGLREVERKIGAI--------- 115

Query: 257 CPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCKH 314
            P   +   P  SL +  L + +++   +P+I   G  GS + I+ + +   ILK   
Sbjct: 116 -PPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGS-EMIVSVLTQYRILKFIS 171

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G* Length = 334

 Score = 41.0 bits (96), Expect = 3e-04
 Identities = 20/141 (14%), Positives = 46/141 (32%), Gaps = 36/141 (25%)

Query: 176 VKQAFHVLYEQ---GLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETH 232
           V     +L E+    +P+V    + +G  + V  ++D + ++++   +  +L+  E    
Sbjct: 204 VYDVIKMLAEKNISAVPIV----NSEGTLLNVYESVDVMHLIQDGDYSNLDLSVGEALLK 259

Query: 233 TISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTG 292
                                       +      D L  +   I  ++V  + ++    
Sbjct: 260 R---------------------PANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDENL 298

Query: 293 -PAGSCQEILYLASLSDILKC 312
              G       + SL+DIL  
Sbjct: 299 KLEG-------ILSLADILNY 312

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C Length = 323

 Score =  114 bits (286), Expect = 1e-29
 Identities = 43/185 (23%), Positives = 82/185 (44%), Gaps = 13/185 (7%)

Query: 130 PEGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLP 189
            +   +    + QL+ + I  FL++ T Y++LP S ++  LD +L VK++ +VL +  + 
Sbjct: 5   TQDSQEKVSIEQQLAVESIRKFLNSKTSYDVLPVSYRLIVLDTSLLVKKSLNVLLQNSIV 64

Query: 190 MVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQ 249
             PLWD    RF G+L+  DFI +++   +N      E ++   +   K  +  L +   
Sbjct: 65  SAPLWDSKTSRFAGLLTTTDFINVIQYYFSNPDKF--ELVDKLQLDGLKDIERALGVD-- 120

Query: 250 MDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDI 309
                           P   L E  LK+L+++   +P+I         + ++ + +   I
Sbjct: 121 --------QLDTASIHPSRPLFEACLKMLESRSGRIPLIDQDEETHR-EIVVSVLTQYRI 171

Query: 310 LKCKH 314
           LK   
Sbjct: 172 LKFVA 176

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C Length = 323

 Score = 46.9 bits (111), Expect = 4e-06
 Identities = 24/138 (17%), Positives = 44/138 (31%), Gaps = 30/138 (21%)

Query: 176 VKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTIS 235
           V     +L +  +  VP+ D+  G  + V  A D + +++    N  +L+  E       
Sbjct: 209 VIDVIQMLTQGRVSSVPIIDE-NGYLINVYEAYDVLGLIKGGIYNDLSLSVGEALMRR-- 265

Query: 236 AWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTG-PA 294
                                    +      D L  +   I + +V    ++   G   
Sbjct: 266 -------------------SDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLV 306

Query: 295 GSCQEILYLASLSDILKC 312
           G       + +LSDILK 
Sbjct: 307 G-------VLTLSDILKY 317

>2qlv_B Protein SIP2, protein SPM2; heterotrimer, ATP-binding, carbohydrate metabolism, kinase, membrane, nucleotide-binding, nucleus; 2.60A {Saccharomyces cerevisiae} SCOP: b.1.18.21 d.353.1.1 Length = 252

 Score =  112 bits (280), Expect = 2e-29
 Identities = 37/139 (26%), Positives = 57/139 (41%), Gaps = 1/139 (0%)

Query: 18  SILVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVD 77
           S++VPV   W  GG +V ++GSFT+W + + + P       F +  RL PG H+++F VD
Sbjct: 1   SLMVPVEIRWQQGGSKVYVTGSFTKWRKMIGLIPDSDNNGSFHVKLRLLPGTHRFRFIVD 60

Query: 78  GEWRHDENQPHVSGNYGVVNCVYIAVPQPDMVPNTISPETSGNMEVDDVVMRPEGFAQYS 137
            E R  +  P  +   G     YI V QP+  P      +     +          A   
Sbjct: 61  NELRVSDFLPTATDQMGNFVN-YIEVRQPEKNPTNEKIRSKEADSMRPPTSDRSSIALQI 119

Query: 138 EADLQLSRDRISSFLSTHT 156
             D     D  + F    +
Sbjct: 120 GKDPDDFGDGYTRFHEDLS 138

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E* Length = 330

 Score =  112 bits (281), Expect = 6e-29
 Identities = 55/187 (29%), Positives = 86/187 (45%), Gaps = 20/187 (10%)

Query: 128 MRPEGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQG 187
             PE   ++S+   + +    ++F+ +H  Y+L+P S K+   D +L VK+AF  L   G
Sbjct: 10  PAPEN--EHSQETPESNSSVYTTFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNG 67

Query: 188 LPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLK 247
           +   PLWD  K  FVG+L+  DFI IL     + + +   ELE H I  W+   LQ    
Sbjct: 68  VRAAPLWDSKKQSFVGMLTITDFINILHRYYKS-ALVQIYELEEHKIETWREVYLQD--- 123

Query: 248 RQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLS 307
                      +PLV   P  SL +    +++NK+  +P+I            LY+ +  
Sbjct: 124 ---------SFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDP-----ESGNTLYILTHK 169

Query: 308 DILKCKH 314
            ILK   
Sbjct: 170 RILKFLK 176

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E* Length = 330

 Score = 45.3 bits (107), Expect = 1e-05
 Identities = 31/194 (15%), Positives = 71/194 (36%), Gaps = 45/194 (23%)

Query: 143 LSRDRISSFLSTHTVYELLPDSGKVTALDVNLA-------------VKQAFHVLYEQGLP 189
           L+  RI  FL         P+    +  ++ +              V  A  +  +  + 
Sbjct: 166 LTHKRILKFLKLFITEFPKPEFMSKSLEELQIGTYANIAMVRTTTPVYVALGIFVQHRVS 225

Query: 190 MVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQ 249
            +P+ D+ KGR V + S  D I +  E   N  +++  +   H                 
Sbjct: 226 ALPVVDE-KGRVVDIYSKFDVINLAAEKTYNNLDVSVTKALQH----------------- 267

Query: 250 MDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTG-PAGSCQEILYLASLSD 308
                      +++   +++L+ +  ++++ +V  + ++       G    I+   SLSD
Sbjct: 268 ----RSHYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDEHDVVKG----IV---SLSD 316

Query: 309 ILKCKHFLHSLGKE 322
           IL  +  + + G++
Sbjct: 317 IL--QALVLTGGEK 328

>1z0n_A 5'-AMP-activated protein kinase, beta-1 subunit; beta sandwich, sugar binding protein; HET: BCD; 1.49A {Rattus norvegicus} SCOP: b.1.18.21 PDB: 1z0m_A* 2f15_A Length = 96

 Score = 97.3 bits (242), Expect = 1e-25
 Identities = 41/98 (41%), Positives = 54/98 (55%), Gaps = 5/98 (5%)

Query: 11  ENSGVVGSILVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHH 70
           E +    +   P  F W  GG+ V LSGSF  WS  +PM+ S+     F  I  LP G H
Sbjct: 1   EVNEKAPAQARPTVFRWTGGGKEVYLSGSFNNWS-KLPMTRSQN---NFVAILDLPEGEH 56

Query: 71  QYKFYVDGEWRHDENQPHVSGNYGVVNCVYIAVPQPDM 108
           QYKF+VDG+W HD ++P V+   G VN + I V + D 
Sbjct: 57  QYKFFVDGQWTHDPSEPIVTSQLGTVNNI-IQVKKTDF 93

>3nme_A Ptpkis1 protein, SEX4 glucan phosphatase; dual specificity phosphatase, carbohydrate BIND hydrolase; 2.40A {Arabidopsis thaliana} Length = 294

 Score =  102 bits (256), Expect = 1e-25
 Identities = 34/137 (24%), Positives = 58/137 (42%), Gaps = 18/137 (13%)

Query: 25  FIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWRHDE 84
            +   G  RV +SG    W + +P++  +G    + +   LP G  +YK+ +DGEW H+E
Sbjct: 175 TLKDKGFSRVEISGLDIGWGQRIPLTLGKG-TGFWILKRELPEGQFEYKYIIDGEWTHNE 233

Query: 85  NQPHVSGN-YGVVNCVYIAVPQPDMVPNTISPETSGNMEVDDVVMRPEGFAQYSEADLQL 143
            +P +  N  G  N  Y  V      P ++   T   +  +D  +  E            
Sbjct: 234 AEPFIGPNKDGHTN-NYAKVVDD---PTSVDGTTRERLSSEDPELLEE------------ 277

Query: 144 SRDRISSFLSTHTVYEL 160
            R ++  FL T +  E+
Sbjct: 278 ERSKLIQFLETCSEAEV 294

>4aee_A Alpha amylase, catalytic region; hydrolase, hyperthermostable, cyclodextrin hydrolase, GH13; 2.28A {Staphylothermus marinus} Length = 696

 Score = 64.8 bits (158), Expect = 1e-11
 Identities = 16/71 (22%), Positives = 27/71 (38%), Gaps = 4/71 (5%)

Query: 12 NSGVVGSILVPVRFIWPNGGRRVSLSGSFTRWSE-PMPMSPSEGCPAVFQIICRLPPGHH 70
            G  G  +V     WP   + + L G FT      + +   E       +  +L PG +
Sbjct: 11 GKGRKGRYIVKFTRHWPQYAKNIYLIGEFTSLYPGFVKLRKIEE---QGIVYLKLWPGEY 67

Query: 71 QYKFYVDGEWR 81
           Y F +D ++ 
Sbjct: 68 GYGFQIDNDFE 78

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280

 Score = 58.2 bits (141), Expect = 5e-10
 Identities = 17/148 (11%), Positives = 50/148 (33%), Gaps = 20/148 (13%)

Query: 164 SGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSN 223
           + K+  +     +++A   + E     +P+ +    + VG+++++D +  +         
Sbjct: 11  NKKIVTVYPTTTIRKALMTMNENKYRRLPVVNAGNNKVVGIITSMDIVDFMGGGSKYNLI 70

Query: 224 LTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVA 283
             + E          V ++       M          ++       + E     L   V 
Sbjct: 71  REKHERNFLAAINEPVREI-------M-------EENVITLKENADIDEAIETFLTKNVG 116

Query: 284 TVPIIHSTGPAGSCQEILYLASLSDILK 311
             PI++         +++ L +  D+++
Sbjct: 117 GAPIVNDEN------QLISLITERDVIR 138

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280

 Score = 46.3 bits (110), Expect = 4e-06
 Identities = 24/137 (17%), Positives = 57/137 (41%), Gaps = 27/137 (19%)

Query: 176 VKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTIS 235
           +K     +   G   +P+  +  GR VG++++ D    ++ LG++ +    +      I+
Sbjct: 167 LKDVARTMVRNGFRRLPVVSE--GRLVGIITSTD---FIKLLGSDWAFNHMQTGNVREIT 221

Query: 236 AWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTG-PA 294
             ++ ++                R ++ A   D LK++A  ++ N +  +P++       
Sbjct: 222 NVRMEEI--------------MKRDVITAKEGDKLKKIAEIMVTNDIGALPVVDENLRIK 267

Query: 295 GSCQEILYLASLSDILK 311
           G    I+   +  D+LK
Sbjct: 268 G----II---TEKDVLK 277

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} Length = 150

 Score = 43.2 bits (102), Expect = 2e-05
 Identities = 30/168 (17%), Positives = 58/168 (34%), Gaps = 35/168 (20%)

Query: 156 TVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR 215
            V +L+  S KV  + +   ++ A  VL + G   +P+ D    +  G++S      IL 
Sbjct: 16  FVKDLMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDP-MYKLHGLISTAM---ILD 71

Query: 216 ELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVAL 275
            +      L  E +E   +   KV ++       M        + +      DS  +   
Sbjct: 72  GI------LGLERIEFERLEEMKVEQV-------MK-------QDIPVLKLEDSFAKALE 111

Query: 276 KILQNKVATVPIIHSTG-PAGSCQEILYLASLSDILK-CKHFLHSLGK 321
             + +    +  ++  G   G    IL   +   ILK     +    +
Sbjct: 112 MTIDHPF--ICAVNEDGYFEG----IL---TRRAILKLLNKKVRQHNR 150

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 Length = 296

 Score = 43.2 bits (102), Expect = 6e-05
 Identities = 15/148 (10%), Positives = 44/148 (29%), Gaps = 27/148 (18%)

Query: 164 SGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSN 223
                 L     +  AF  + E G+  + + ++   +  G+L+  D +  +        +
Sbjct: 27  IKNPPILSKEDRLGSAFKKINEGGIGRIIVANE---KIEGLLTTRDLLSTVESYCK--DS 81

Query: 224 LTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVA 283
            ++ +L  + IS   +          M           V              ++     
Sbjct: 82  CSQGDL--YHISTTPIIDY-------M-------TPNPVTVYNTSDEFTAINIMVTRNFG 125

Query: 284 TVPIIHSTGPAGSCQEILYLASLSDILK 311
           ++P++          + + + +  + L 
Sbjct: 126 SLPVVDIND------KPVGIVTEREFLL 147

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 Length = 296

 Score = 41.7 bits (98), Expect = 2e-04
 Identities = 24/175 (13%), Positives = 59/175 (33%), Gaps = 34/175 (19%)

Query: 137 SEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDD 196
           +E +                V   +  S KV  +   + + QA  ++  +G   +P+ DD
Sbjct: 141 TEREF---LLLYKDLDEIFPVKVFM--STKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDD 195

Query: 197 FKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRP 256
              + VG+++ ++    +++L      L  +      +               M      
Sbjct: 196 -DNKVVGIVTVVN---AIKQLAKAVDKLDPDYFYGKVVKD------------VM------ 233

Query: 257 CPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK 311
               LV      S+   A +++  ++ ++ I++          I  + +  D+L 
Sbjct: 234 -VTNLVTIDELASVNRAAAEMIVKRIGSLLILNKDN------TIRGIITERDLLI 281

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.7 bits (102), Expect = 7e-05
 Identities = 49/318 (15%), Positives = 91/318 (28%), Gaps = 102/318 (32%)

Query: 69  HHQYKFYVDGEWRH------DENQPHVSGNYGVVNCVYIAVPQPDMVPNTISPETSGNME 122
           HH   F   GE ++         +     N+   +C  +     DM  + +S E     E
Sbjct: 4   HHHMDFET-GEHQYQYKDILSVFEDAFVDNF---DCKDV----QDMPKSILSKE-----E 50

Query: 123 VDDVVMRPEGFAQYSEADLQLSRDRISSFLS--THTVYELLPDSGKVTALDVNLA-VKQA 179
           +D ++M  +         +  +     + LS     V + + +      L +N   +   
Sbjct: 51  IDHIIMSKD--------AVSGTLRLFWTLLSKQEEMVQKFVEE-----VLRINYKFLMSP 97

Query: 180 FHVLYEQ-GLPMV-------PLWDD---FKGRFVGVLSALDFILILRE------------ 216
                 Q  +           L++D   F    V   S L   L LR+            
Sbjct: 98  IKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV---SRLQPYLKLRQALLELRPAKNVL 154

Query: 217 ----LGTNGSNLTEEELETHTISA-------W-KVGK---------LQLNLKRQMDGNG- 254
               LG+  + +  +   ++ +         W  +           +   L  Q+D N  
Sbjct: 155 IDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWT 214

Query: 255 ----RPCPRPLVQAGPYDSLKEV--------ALKILQNKVATVPIIHSTGPAGSCQEILY 302
                     L        L+ +         L +L N V      ++     SC+ IL 
Sbjct: 215 SRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN-VQNAKAWNAFN--LSCK-ILL 270

Query: 303 L---ASLSDILKCKHFLH 317
                 ++D L      H
Sbjct: 271 TTRFKQVTDFLSAATTTH 288

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 Length = 282

 Score = 42.1 bits (99), Expect = 1e-04
 Identities = 27/149 (18%), Positives = 55/149 (36%), Gaps = 11/149 (7%)

Query: 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFI-LILRELGTNGSNL 224
            V+ +     +K A   L       +P+  D +G  VG++   D +           + L
Sbjct: 135 YVSIVWEGTPLKAALKALLLSNSMALPV-VDSEGNLVGIVDETDLLRDSEIVRIMKSTEL 193

Query: 225 TEEELETHTISAWKVGKLQLNLKRQMDGNGRP-CPRPLVQAGPYDSLKEVALKILQNKVA 283
                E   + +      +    +  +        R ++ A P+ ++ EVALK+ +  + 
Sbjct: 194 AASSEEEWILESHPTLLFEKFELQLPNKPVAEIMTRDVIVATPHMTVHEVALKMAKYSIE 253

Query: 284 TVPIIHSTG-PAGSCQEILYLASLSDILK 311
            +P+I   G   G    ++      D+LK
Sbjct: 254 QLPVIRGEGDLIG----LIR---DFDLLK 275

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A Length = 144

 Score = 40.2 bits (95), Expect = 2e-04
 Identities = 23/141 (16%), Positives = 43/141 (30%), Gaps = 36/141 (25%)

Query: 176 VKQAFHVLYEQ---GLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETH 232
           V     +L +     +P++    D  G  + V  A D + +++    N  +L+  E    
Sbjct: 30  VIDVIQMLTQGRVSSVPII----DENGYLINVYEAYDVLGLIKGGIYNDLSLSVGEALMR 85

Query: 233 TISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTG 292
                                       +      D L  +   I + +V    ++   G
Sbjct: 86  R---------------------SDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVG 124

Query: 293 -PAGSCQEILYLASLSDILKC 312
              G       + +LSDILK 
Sbjct: 125 RLVG-------VLTLSDILKY 138

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	323
1z0n_A	96	5'-AMP-activated protein kinase, beta-1 subunit; b	99.91
2qlv_B	252	Protein SIP2, protein SPM2; heterotrimer, ATP-bind	99.9
4esy_A	170	CBS domain containing membrane protein; structural	99.9
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	99.89
3nme_A	294	Ptpkis1 protein, SEX4 glucan phosphatase; dual spe	99.88
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	99.8
3k6e_A	156	CBS domain protein; streptococcus pneumoniae TIGR4	99.8
3i8n_A	130	Uncharacterized protein VP2912; APC64273.1, vibrio	99.79
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	99.79
3lv9_A	148	Putative transporter; CBS domain, PSI, MCSG, struc	99.79
3hf7_A	130	Uncharacterized CBS-domain protein; CSB-domain PAI	99.79
3lhh_A	172	CBS domain protein; structural genomics, PSI-2, pr	99.78
3nqr_A	127	Magnesium and cobalt efflux protein CORC; structur	99.77
3oco_A	153	Hemolysin-like protein containing CBS domains; str	99.77
3lfr_A	136	Putative metal ION transporter; CBS, AMP, PSI, MCS	99.76
3ocm_A	173	Putative membrane protein; structural genomics, PS	99.76
3jtf_A	129	Magnesium and cobalt efflux protein; CBS domain, C	99.75
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	99.75
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	99.75
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	99.75
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	99.75
2d4z_A	250	Chloride channel protein; CLC chloride channel cyt	99.75
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	99.74
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	99.74
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	99.74
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	99.74
4gqw_A	152	CBS domain-containing protein CBSX1, chloroplasti;	99.74
1pbj_A	125	Hypothetical protein; structural genomics, domain,	99.73
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	99.73
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	99.73
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	99.73
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	99.72
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	99.72
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	99.72
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	99.72
3oi8_A	156	Uncharacterized protein; structural genomics, PSI-	99.72
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	99.72
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	99.72
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	99.72
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	99.71
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	99.7
1pvm_A	184	Conserved hypothetical protein TA0289; structural	99.7
3kxr_A	205	Magnesium transporter, putative; cystathionine bet	99.7
4fry_A	157	Putative signal-transduction protein with CBS DOM;	99.7
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	99.69
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	99.69
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	99.68
1vr9_A	213	CBS domain protein/ACT domain protein; structural	99.66
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	99.66
3ddj_A	296	CBS domain-containing protein; structural genomics	99.66
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	99.65
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	99.64
3ddj_A	296	CBS domain-containing protein; structural genomics	99.63
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	99.6
4aee_A	696	Alpha amylase, catalytic region; hydrolase, hypert	99.59
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	99.58
3org_A	632	CMCLC; transporter, transport protein; 3.50A {Cyan	99.58
2yvy_A	278	MGTE, Mg2+ transporter MGTE; membrane protein, tra	99.58
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	99.57
2oux_A	286	Magnesium transporter; 10001B, structural genomics	99.57
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	99.51
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	99.51
2zy9_A	473	Mg2+ transporter MGTE; membrane protien, metal tra	99.47
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	99.42
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	99.39
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	99.37
4af0_A	556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	99.35
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	99.35
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	99.34
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	99.34
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	99.3
4aef_A	645	Neopullulanase (alpha-amylase II); hydrolase, ther	99.19
3ghd_A	70	A cystathionine beta-synthase domain protein FUSE	99.18
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	99.12
1vr9_A	213	CBS domain protein/ACT domain protein; structural	98.95
3ghd_A	70	A cystathionine beta-synthase domain protein FUSE	98.92
4esy_A	170	CBS domain containing membrane protein; structural	98.83
2d4z_A	250	Chloride channel protein; CLC chloride channel cyt	98.62
3fio_A	70	A cystathionine beta-synthase domain protein fused	98.61
3fio_A	70	A cystathionine beta-synthase domain protein fused	98.59
2z0b_A	131	GDE5, KIAA1434, putative glycerophosphodiester pho	98.55
3jtf_A	129	Magnesium and cobalt efflux protein; CBS domain, C	98.5
3oco_A	153	Hemolysin-like protein containing CBS domains; str	98.5
3lv9_A	148	Putative transporter; CBS domain, PSI, MCSG, struc	98.49
3nqr_A	127	Magnesium and cobalt efflux protein CORC; structur	98.49
3i8n_A	130	Uncharacterized protein VP2912; APC64273.1, vibrio	98.49
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	98.47
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	98.45
3hf7_A	130	Uncharacterized CBS-domain protein; CSB-domain PAI	98.44
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	98.44
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	98.44
4fry_A	157	Putative signal-transduction protein with CBS DOM;	98.43
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	98.43
3lhh_A	172	CBS domain protein; structural genomics, PSI-2, pr	98.43
3kxr_A	205	Magnesium transporter, putative; cystathionine bet	98.42
3lfr_A	136	Putative metal ION transporter; CBS, AMP, PSI, MCS	98.42
3k6e_A	156	CBS domain protein; streptococcus pneumoniae TIGR4	98.42
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	98.41
4gqw_A	152	CBS domain-containing protein CBSX1, chloroplasti;	98.41
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	98.4
3oi8_A	156	Uncharacterized protein; structural genomics, PSI-	98.38
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	98.36
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	98.36
1pbj_A	125	Hypothetical protein; structural genomics, domain,	98.35
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	98.35
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	98.35
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	98.35
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	98.33
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	98.32
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	98.32
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	98.3
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	98.29
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	98.28
1pvm_A	184	Conserved hypothetical protein TA0289; structural	98.26
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	98.26
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	98.26
3ocm_A	173	Putative membrane protein; structural genomics, PS	98.24
3c8d_A	403	Enterochelin esterase; alpha-beta-alpha sandwich,	98.22
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	98.2
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	98.18
2oux_A	286	Magnesium transporter; 10001B, structural genomics	98.16
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	98.15
2yvy_A	278	MGTE, Mg2+ transporter MGTE; membrane protein, tra	98.12
1ac0_A	108	Glucoamylase; hydrolase, starch binding domain; HE	98.07
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	97.97
2zy9_A	473	Mg2+ transporter MGTE; membrane protien, metal tra	97.95
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	97.93
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	97.92
1m7x_A	617	1,4-alpha-glucan branching enzyme; alpha/beta barr	97.72
3org_A	632	CMCLC; transporter, transport protein; 3.50A {Cyan	97.71
3aml_A	755	OS06G0726400 protein; starch-branching, transferas	97.59
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	97.55
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	97.35
3k1d_A	722	1,4-alpha-glucan-branching enzyme; mycobacterium t	97.31
4af0_A	556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	97.29
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	97.22
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	97.19
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	96.98
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	96.96
2laa_A	104	Beta/alpha-amylase; SBD, CBM25, hydrolase; NMR {Pa	96.74
1qho_A	686	Alpha-amylase; glycoside hydrolase, starch degrada	96.71
1cyg_A	680	Cyclodextrin glucanotransferase; glycosyltransfera	96.4
2vn4_A	599	Glucoamylase; hydrolase, carbohydrate binding, gly	96.36
1bf2_A	750	Isoamylase; hydrolase, glycosidase, debranching en	96.3
1wzl_A	585	Alpha-amylase II; pullulan, GH-13, alpha-amylase f	96.26
2bhu_A	602	Maltooligosyltrehalose trehalohydrolase; alpha-amy	96.17
2wsk_A	657	Glycogen debranching enzyme; carbohydrate metaboli	96.12
3bmv_A	683	Cyclomaltodextrin glucanotransferase; glycosidase,	96.09
2vr5_A	718	Glycogen operon protein GLGX; hydrolase, glycosida	95.97
1d3c_A	686	Cyclodextrin glycosyltransferase; alpha-amylase, p	95.93
3vgf_A	558	Malto-oligosyltrehalose trehalohydrolase; alpha/be	95.89
1j0h_A	588	Neopullulanase; beta-alpha-barrels, hydrolase; 1.9	95.8
1vem_A	516	Beta-amylase; beta-alpha-barrels, optimum PH, hydr	95.65
2e8y_A	718	AMYX protein, pullulanase; multiple domain, beta-a	95.28
2fhf_A	1083	Pullulanase; multiple domain, beta-alpha-barrel, a	94.91
2ya0_A	714	Putative alkaline amylopullulanase; hydrolase, gly	94.27
1ea9_C	583	Cyclomaltodextrinase; hydrolase, glycosidase; 3.2A	94.21
4aio_A	884	Limit dextrinase; hydrolase, pullulanase, glycosid	93.99
3faw_A	877	Reticulocyte binding protein; TIM barrel, beta bar	93.98
1gcy_A	527	Glucan 1,4-alpha-maltotetrahydrolase; beta-alpha-b	93.48
2wan_A	921	Pullulanase; hydrolase, glycoside hydrolase, polys	93.03
1ji1_A	637	Alpha-amylase I; beta/alpha barrel, hydrolase; 1.6	92.22
2wan_A	921	Pullulanase; hydrolase, glycoside hydrolase, polys	90.73
3m07_A	618	Putative alpha amylase; IDP00968, csgid, structura	90.66
4fch_A	221	Outer membrane protein SUSE; starch binding, extra	89.48
2c3v_A	102	Alpha-amylase G-6; carbohydrate-binding module, st	88.96
2ya1_A	1014	Putative alkaline amylopullulanase; hydrolase, gly	87.7

>1z0n_A 5'-AMP-activated protein kinase, beta-1 subunit; beta sandwich, sugar binding protein; HET: BCD; 1.49A {Rattus norvegicus} SCOP: b.1.18.21 PDB: 1z0m_A* 2f15_A

Probab=99.91  E-value=1.9e-24  Score=169.34  Aligned_cols=82  Identities=45%  Similarity=0.872  Sum_probs=75.8

Q ss_pred             CCeeeEEEEEeeCCCceEEEEeccCCCCCCCCCCCCCCCCCeEEEEEEeCCceEEEEEEEcCeeecCCCCCeeeCCCCcc
Q 020637           17 GSILVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGVV   96 (323)
Q Consensus        17 ~~~~~~v~F~w~~~~~~V~l~Gsf~~W~~~~~m~~~~~~~g~~~~~~~LppG~y~YkFiVDG~w~~d~~~p~~~d~~G~~   96 (323)
                      .+.+++|+|+|.++|++|+|+|+||+|+ .++|++.   .|.|++++.|++|.|+|||+|||.|++||.+|++.|+.|+.
T Consensus         7 ~~~~~~v~F~wap~a~~V~v~GdFn~W~-~~~m~~~---~g~w~~~v~l~~G~~~YKf~VdG~~~~DP~~~~~~d~~G~~   82 (96)
T 1z0n_A            7 PAQARPTVFRWTGGGKEVYLSGSFNNWS-KLPMTRS---QNNFVAILDLPEGEHQYKFFVDGQWTHDPSEPIVTSQLGTV   82 (96)
T ss_dssp             ---CEEEEEEECSCCSCEEEEEGGGTTC-CEECEEE---TTEEEEEEEECSEEEEEEEEETTEEECCTTSCEEECTTSCE
T ss_pred             CCCceEEEEEECCCCcEEEEEEEeCCCc-cccCEEC---CCEEEEEEEccCCCEEEEEEECCeEEcCCCCCeEECCCCCE
Confidence            4568999999999999999999999999 6899984   47999999999999999999999999999999999999999


Q ss_pred             ceEEEe
Q 020637           97 NCVYIA  102 (323)
Q Consensus        97 nnvl~v  102 (323)
                      ||+|.|
T Consensus        83 Nnvi~V   88 (96)
T 1z0n_A           83 NNIIQV   88 (96)
T ss_dssp             EEEEEE
T ss_pred             eEEEEE
Confidence            999999

>2qlv_B Protein SIP2, protein SPM2; heterotrimer, ATP-binding, carbohydrate metabolism, kinase, membrane, nucleotide-binding, nucleus; 2.60A {Saccharomyces cerevisiae} SCOP: b.1.18.21 d.353.1.1

Probab=99.90  E-value=5.8e-24  Score=193.61  Aligned_cols=88  Identities=32%  Similarity=0.663  Sum_probs=80.5

Q ss_pred             eeeEEEEEeeCCCceEEEEeccCCCCCCCCCCCCCCCCCeEEEEEEeCCceEEEEEEEcCeeecCCCCCeeeCCCCccce
Q 020637           19 ILVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGVVNC   98 (323)
Q Consensus        19 ~~~~v~F~w~~~~~~V~l~Gsf~~W~~~~~m~~~~~~~g~~~~~~~LppG~y~YkFiVDG~w~~d~~~p~~~d~~G~~nn   98 (323)
                      .++||+|+|+++|++|+|+|+|++|++.++|+|..+.+|.|++++.||||.|+|||+|||.|++||.+|++.|+.|+.||
T Consensus         2 ~~vpv~f~W~~~a~~V~V~GsF~~W~~~~~m~k~~~~~G~f~~tv~LppG~y~YKFiVDG~w~~Dp~~p~~~d~~G~~nN   81 (252)
T 2qlv_B            2 LMVPVEIRWQQGGSKVYVTGSFTKWRKMIGLIPDSDNNGSFHVKLRLLPGTHRFRFIVDNELRVSDFLPTATDQMGNFVN   81 (252)
T ss_dssp             CCEEEEEEECSCCSCEEEEEGGGTTSSCEECEECSSSTTCEEEEEEECSEEEEEEEEETTEEECCTTSCEEBCSSCCCEE
T ss_pred             CcEEEEEEEeCCCcEEEEEEEeCCCcCcccceeccCCCCcEEEEEECCCCEEEEEEEECCEEEeCCCCCEEecCCCcCcc
Confidence            47899999999999999999999999878999854457999999999999999999999999999999999999999999


Q ss_pred             EEEecCCCC
Q 020637           99 VYIAVPQPD  107 (323)
Q Consensus        99 vl~v~~~~~  107 (323)
                      +|.| .+++
T Consensus        82 vi~V-~~~~   89 (252)
T 2qlv_B           82 YIEV-RQPE   89 (252)
T ss_dssp             EEEE-CC--
T ss_pred             eeec-cCcc
Confidence            9999 5443

>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}

Probab=99.90  E-value=2.2e-24  Score=184.39  Aligned_cols=152  Identities=16%  Similarity=0.254  Sum_probs=114.7

Q ss_pred             HHHHhhhhhccccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCC
Q 020637          143 LSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGS  222 (323)
Q Consensus       143 ~~~~~~~~~l~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~  222 (323)
                      ..++++.+.++..++.|+|  +++++++.+++++.+|+++|.+++++++||+|+ +|+++|+||.+|+++.+.....   
T Consensus         6 ~~~~~~~~~l~~~~V~diM--~~~v~~v~~~~tl~~a~~~m~~~~~~~~pVvd~-~g~lvGiit~~Dll~~~~~~~~---   79 (170)
T 4esy_A            6 ARRRAIARAIRQVPIRDIL--TSPVVTVREDDTLDAVAKTMLEHQIGCAPVVDQ-NGHLVGIITESDFLRGSIPFWI---   79 (170)
T ss_dssp             HHHHHHHHHHHTSBGGGGC--CSCCCCEETTSBHHHHHHHHHHTTCSEEEEECT-TSCEEEEEEGGGGGGGTCCTTH---
T ss_pred             HHHHHHHHHHcCCCHHHhc--CCCCcEECCcCcHHHHHHHHHHcCCeEEEEEcC-CccEEEEEEHHHHHHHHhhccc---
Confidence            3567888899999999999  689999999999999999999999999999995 7999999999999643211000   


Q ss_pred             CCChhhh-hhh-hHHHHHHHHHHhhcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccE
Q 020637          223 NLTEEEL-ETH-TISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEI  300 (323)
Q Consensus       223 ~l~~~~l-~~~-~i~~~~~~~~~~~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~l  300 (323)
                       ....++ ... ............    ....+.++|++++++|.++++|.+|+.+|.++++++|||+|+    |   ++
T Consensus        80 -~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~~im~~~~~tv~~~~~l~~a~~~m~~~~~~~lpVvd~----g---~l  147 (170)
T 4esy_A           80 -YEASEILSRAIPAPEVEHLFETG----RKLTASAVMTQPVVTAAPEDSVGSIADQMRRHGIHRIPVVQD----G---VP  147 (170)
T ss_dssp             -HHHHHHHTTTSCHHHHHHHHHHH----TTCBHHHHCBCCSCCBCTTSBHHHHHHHHHHTTCSEEEEEET----T---EE
T ss_pred             -cchhhhhhhccchhhHHhhhccc----cccchhhhcccCcccCCcchhHHHHHHHHHHcCCcEEEEEEC----C---EE
Confidence             000000 000 000111111110    111234589999999999999999999999999999999984    5   89


Q ss_pred             EEEeeccccccc
Q 020637          301 LYLASLSDILKC  312 (323)
Q Consensus       301 vGIIT~~dIl~~  312 (323)
                      +||||++||+++
T Consensus       148 vGivt~~Dil~~  159 (170)
T 4esy_A          148 VGIVTRRDLLKL  159 (170)
T ss_dssp             EEEEEHHHHTTT
T ss_pred             EEEEEHHHHHHH
Confidence            999999999998

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C

Probab=99.89  E-value=5.4e-23  Score=192.17  Aligned_cols=159  Identities=27%  Similarity=0.426  Sum_probs=123.5

Q ss_pred             HHHHHHhhhhhccccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCC
Q 020637          141 LQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTN  220 (323)
Q Consensus       141 l~~~~~~~~~~l~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~  220 (323)
                      ..+.++.+.+||+.++|||+||.+.++++++.++|+.+|+++|.+++++++||||++.++++|+||.+||+.++.+++..
T Consensus        16 ~~~~~~~i~~~l~~~~~~d~m~~~~~~v~v~~~~sv~~a~~~m~~~~~~~~pV~d~~~~~lvGilt~~Dl~~~l~~~~~~   95 (323)
T 3t4n_C           16 QQLAVESIRKFLNSKTSYDVLPVSYRLIVLDTSLLVKKSLNVLLQNSIVSAPLWDSKTSRFAGLLTTTDFINVIQYYFSN   95 (323)
T ss_dssp             HHHHHHHHHHHHHHSBHHHHSCSEEEEEEEETTSBHHHHHHHHHHTTCSCEEEEETTTTEEEEEECHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhCchHhhCCCCCcEEEEcCCCcHHHHHHHHHHcCCceEEEEeCCCCeEEEEEEHHHHHHHHHHHHcC
Confidence            34467899999999999999999999999999999999999999999999999997667999999999999977654432


Q ss_pred             CCCCChhhhhhhhHHHHHHHHHHhhcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccE
Q 020637          221 GSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEI  300 (323)
Q Consensus       221 ~~~l~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~l  300 (323)
                      +...  +.++......+++.....          .+|+++++++.+++++.+|+.+|.+++++++||+|++...+ .+++
T Consensus        96 ~~~~--~~l~~~~~~~v~~i~~~~----------~~~~~~~v~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~-~~~l  162 (323)
T 3t4n_C           96 PDKF--ELVDKLQLDGLKDIERAL----------GVDQLDTASIHPSRPLFEACLKMLESRSGRIPLIDQDEETH-REIV  162 (323)
T ss_dssp             GGGG--GGGGGCBHHHHHHHHHHT----------TC----CCCBCTTSBHHHHHHHHHHHTCSEEEEEEECTTTC-CEEE
T ss_pred             cchh--HHHHHHHHHHHHHHHHHh----------CCCCCCceEeCCCCcHHHHHHHHHhCCeeEEEEEecCCCCC-ccce
Confidence            2111  233333334455544322          26899999999999999999999999999999999621111 0029


Q ss_pred             EEEeeccccccc
Q 020637          301 LYLASLSDILKC  312 (323)
Q Consensus       301 vGIIT~~dIl~~  312 (323)
                      +||||++||+++
T Consensus       163 ~Givt~~di~~~  174 (323)
T 3t4n_C          163 VSVLTQYRILKF  174 (323)
T ss_dssp             EEEEEHHHHHHH
T ss_pred             EEEecHHHHHHH
Confidence            999999999987

>3nme_A Ptpkis1 protein, SEX4 glucan phosphatase; dual specificity phosphatase, carbohydrate BIND hydrolase; 2.40A {Arabidopsis thaliana}

Probab=99.88  E-value=6.5e-23  Score=191.46  Aligned_cols=85  Identities=27%  Similarity=0.539  Sum_probs=78.7

Q ss_pred             CCeeeEEEEEeeC-CCceEEEEeccCCCCCCCCCCCCCCCCCeEEEEEEeCCceEEEEEEEcCeeecCCCCCee-eCCCC
Q 020637           17 GSILVPVRFIWPN-GGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWRHDENQPHV-SGNYG   94 (323)
Q Consensus        17 ~~~~~~v~F~w~~-~~~~V~l~Gsf~~W~~~~~m~~~~~~~g~~~~~~~LppG~y~YkFiVDG~w~~d~~~p~~-~d~~G   94 (323)
                      ....++++|+|++ +|++|+|+||||+|+..++|+|.+ .+|.|++++.||||.|+|||+|||+|++||++|.+ .|+.|
T Consensus       166 ~~~k~~v~f~~~~~~~~~V~v~GsF~~W~~~~~l~k~~-~~g~~~~~~~L~~G~y~YkFiVDG~w~~d~~~~~~~~d~~G  244 (294)
T 3nme_A          166 GLKRKTVTLTLKDKGFSRVEISGLDIGWGQRIPLTLGK-GTGFWILKRELPEGQFEYKYIIDGEWTHNEAEPFIGPNKDG  244 (294)
T ss_dssp             CCCCEEEEEEEECSSCSCEEEEETTTEEEEEEECEECT-TTCEEEEEEEECSEEEEEEEEETTEEECCTTSCEECSCTTS
T ss_pred             ccccccceeeeccCCCCEEEEEEeccCCCCcccceEcC-CCCEEEEEEECCCceEEEEEEECCEEeeCCCCCeeeECCCC
Confidence            4567899999998 789999999999999778999975 37999999999999999999999999999999976 78999


Q ss_pred             ccceEEEe
Q 020637           95 VVNCVYIA  102 (323)
Q Consensus        95 ~~nnvl~v  102 (323)
                      +.||+|.|
T Consensus       245 ~~nn~~~v  252 (294)
T 3nme_A          245 HTNNYAKV  252 (294)
T ss_dssp             CCEEEEEE
T ss_pred             CEeEEEEE
Confidence            99999999

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*

Probab=99.80  E-value=2.5e-19  Score=168.03  Aligned_cols=154  Identities=22%  Similarity=0.395  Sum_probs=123.1

Q ss_pred             HHHHHHHhhhhhccccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcC
Q 020637          140 DLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGT  219 (323)
Q Consensus       140 ~l~~~~~~~~~~l~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~  219 (323)
                      +.....+.+.+|+...+|+|+|+.+.++++++.++++.+|+++|.+++++++||||++.++++|+||.+|++..+.....
T Consensus         7 ~~~~~~~~~~~~l~~~~v~dim~~~~~vv~v~~~~tv~~a~~~~~~~~~~~~pV~d~~~~~~vGiv~~~Dl~~~~~~~~~   86 (334)
T 2qrd_G            7 TQKGALKEIQAFIRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIKYYYQ   86 (334)
T ss_dssp             HHHHHHHHHHHHHHHSBGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSCEEEEETTTTEEEEEECHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCchhhhCCCCCCEEEEcCCCCHHHHHHHHHHcCCeEEEEEeCCCCeEEEEEEHHHHHHHHHHHhh
Confidence            34446778889999999999999888999999999999999999999999999999755899999999999987654321


Q ss_pred             ---CCCCCChhhhhhhhHHHHHHHHHHhhcccccCCCCCCCCCCc--EEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCC
Q 020637          220 ---NGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPL--VQAGPYDSLKEVALKILQNKVATVPIIHSTGPA  294 (323)
Q Consensus       220 ---~~~~l~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~im~~~~--vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~  294 (323)
                         ....+  ..+....+..+++....            +|.+++  +++.+++++.+|+.+|.+++++++||+|+  .+
T Consensus        87 ~~~~~~~~--~~~~~~~~~~i~~~l~~------------im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~--~~  150 (334)
T 2qrd_G           87 SSSFPEAI--AEIDKFRLLGLREVERK------------IGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDV--DG  150 (334)
T ss_dssp             HCSCGGGG--GGGGSCBHHHHHHHHHH------------HTCSCSSCCCBCTTSBHHHHHHHHHHSCCSEEEEEEE--ET
T ss_pred             ccCCccHH--HHHhhhchhhHHHHHHh------------hccCCCceeeeCCCCcHHHHHHHHHHCCceEEEEEeC--CC
Confidence               11100  12223344555554432            466777  99999999999999999999999999986  32


Q ss_pred             CCccc----EEEEeeccccccc
Q 020637          295 GSCQE----ILYLASLSDILKC  312 (323)
Q Consensus       295 g~~~~----lvGIIT~~dIl~~  312 (323)
                      +   +    ++||||..||+++
T Consensus       151 ~---~~~~~~~Givt~~dl~~~  169 (334)
T 2qrd_G          151 E---TGSEMIVSVLTQYRILKF  169 (334)
T ss_dssp             T---TTEEEEEEEEEHHHHHHH
T ss_pred             C---cCccceEEEeeHHHHHHH
Confidence            2   4    9999999999987

>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}

Probab=99.80  E-value=7.1e-20  Score=155.03  Aligned_cols=125  Identities=18%  Similarity=0.208  Sum_probs=101.4

Q ss_pred             cccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhH
Q 020637          155 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTI  234 (323)
Q Consensus       155 ~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i  234 (323)
                      .++.++|....+++++++++|+.+|+++|.+++++++||+|+ .++++|+||.+|+++.+......     ...+.    
T Consensus        15 ~~~~~iM~P~~~v~~v~~~~t~~~a~~~m~~~~~s~~pVvd~-~~~lvGiit~~Di~~~~~~~~~~-----~~~~~----   84 (156)
T 3k6e_A           15 GQEETFLTPAKNLAVLIDTHNADHATLLLSQMTYTRVPVVTD-EKQFVGTIGLRDIMAYQMEHDLS-----QEIMA----   84 (156)
T ss_dssp             TTGGGGEEETTSSCCEETTSBHHHHHHHHTTSSSSEEEEECC--CBEEEEEEHHHHHHHHHHHTCC-----HHHHT----
T ss_pred             ccHHHhCcchhHeEEECCcCCHHHHHHHHHHcCCcEEEEEcC-CCcEEEEEEecchhhhhhhcccc-----ccccc----
Confidence            467788866779999999999999999999999999999995 78999999999998766533210     00000    


Q ss_pred             HHHHHHHHHhhcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637          235 SAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (323)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~  312 (323)
                                     ...+.++|.++++++.+++++.+|+.+|.+++  .+||+|+   .|   +++||||++||+++
T Consensus        85 ---------------~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~--~lpVVd~---~g---~l~GiiT~~Dil~~  139 (156)
T 3k6e_A           85 ---------------DTDIVHMTKTDVAVVSPDFTITEVLHKLVDES--FLPVVDA---EG---IFQGIITRKSILKA  139 (156)
T ss_dssp             ---------------TSBGGGTCBCSCCCBCTTCCHHHHHHHTTTSS--EEEEECT---TS---BEEEEEEHHHHHHH
T ss_pred             ---------------ccCHHHhhcCCceecccccHHHHHHHHHHHcC--CeEEEec---CC---EEEEEEEHHHHHHH
Confidence                           01133579999999999999999999999876  4999985   35   89999999999998

>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}

Probab=99.79  E-value=1.8e-19  Score=146.81  Aligned_cols=124  Identities=13%  Similarity=0.223  Sum_probs=100.3

Q ss_pred             ccccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhh
Q 020637          152 LSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELET  231 (323)
Q Consensus       152 l~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~  231 (323)
                      |...++.|+|.....++++++++++.+|+++|.+++++++||+|++.++++|+||.+|++..+.....   ..       
T Consensus         3 l~~~~v~~iM~~~~~v~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~~~~~---~~-------   72 (130)
T 3i8n_A            3 AQDVPVTQVMTPRPVVFRVDATMTINEFLDKHKDTPFSRPLVYSEQKDNIIGFVHRLELFKMQQSGSG---QK-------   72 (130)
T ss_dssp             ----CCTTTSCCBCCCCEEETTSBHHHHHHHTTTCSCSCCEEESSSTTCEEEECCHHHHHHHHHTTTT---TS-------
T ss_pred             cCcCCHhhCCCcHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCcEEEEEEHHHHHHHHhcCCC---cC-------
Confidence            56789999996557788999999999999999999999999999634899999999999876542110   00       


Q ss_pred             hhHHHHHHHHHHhhcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeecccccc
Q 020637          232 HTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (323)
Q Consensus       232 ~~i~~~~~~~~~~~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~  311 (323)
                          .+.+                +| ++++++.+++++.+|+.+|.+++++++||+|+   .|   +++||||..||++
T Consensus        73 ----~v~~----------------~m-~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~---~g---~~vGivt~~dil~  125 (130)
T 3i8n_A           73 ----QLGA----------------VM-RPIQVVLNNTALPKVFDQMMTHRLQLALVVDE---YG---TVLGLVTLEDIFE  125 (130)
T ss_dssp             ----BHHH----------------HS-EECCEEETTSCHHHHHHHHHHHTCCEEEEECT---TS---CEEEEEEHHHHHH
T ss_pred             ----CHHH----------------Hh-cCCcCcCCCCcHHHHHHHHHHcCCeEEEEEcC---CC---CEEEEEEHHHHHH
Confidence                1112                47 45789999999999999999999999999985   35   8999999999997


Q ss_pred             c
Q 020637          312 C  312 (323)
Q Consensus       312 ~  312 (323)
                      +
T Consensus       126 ~  126 (130)
T 3i8n_A          126 H  126 (130)
T ss_dssp             H
T ss_pred             H
Confidence            6

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*

Probab=99.79  E-value=1.6e-19  Score=169.18  Aligned_cols=152  Identities=34%  Similarity=0.586  Sum_probs=121.9

Q ss_pred             HHHHhhhhhccccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCC
Q 020637          143 LSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGS  222 (323)
Q Consensus       143 ~~~~~~~~~l~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~  222 (323)
                      .+.+.++.||...+|+|+|+.+.++++++.++++.+|+++|.+++++++||+|++.++++|+||.+|++..+........
T Consensus        23 ~~~~~~~~~l~~~~v~dim~p~~~v~~v~~~~~v~~a~~~~~~~~~~~~pV~d~~~~~~vGivt~~Dll~~l~~~~~~~~  102 (330)
T 2v8q_E           23 SNSSVYTTFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRYYKSAL  102 (330)
T ss_dssp             CCSCHHHHHHHHSBGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSEEEEEETTTTEEEEEEEHHHHHHHHHHHHHHHT
T ss_pred             hhhHHHHHHHHcCcHhhhccCCCcEEEEeCCCcHHHHHHHHHHcCCcEEEEEeCCCCeEEEEEEHHHHHHHHHHHHhccc
Confidence            35678999999999999998889999999999999999999999999999999754799999999999987653221000


Q ss_pred             CCChhhhhhhhHHHHHHHHHHhhcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEE
Q 020637          223 NLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILY  302 (323)
Q Consensus       223 ~l~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvG  302 (323)
                       ....++....+..+.+..            +++|.++++++.+++++.+|+.+|.+++++++||+|+  +.|   +++|
T Consensus       103 -~~~~~l~~~~~~~~~~~~------------~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~--~~~---~~~G  164 (330)
T 2v8q_E          103 -VQIYELEEHKIETWREVY------------LQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDP--ESG---NTLY  164 (330)
T ss_dssp             -TTCCCGGGCBHHHHHHHH------------SSSSCCCCCCBCTTSBHHHHHHHHHHHTCSCEEEECT--TTC---CEEE
T ss_pred             -cchhHHhhccHHHHHHHH------------hhcccCCceEeCCCCCHHHHHHHHHHCCCCeEEEEeC--CCC---cEEE
Confidence             000122233334443321            2479999999999999999999999999999999983  135   7999


Q ss_pred             Eeeccccccc
Q 020637          303 LASLSDILKC  312 (323)
Q Consensus       303 IIT~~dIl~~  312 (323)
                      |||..||+++
T Consensus       165 ivt~~dl~~~  174 (330)
T 2v8q_E          165 ILTHKRILKF  174 (330)
T ss_dssp             EECHHHHHHH
T ss_pred             EEcHHHHHHH
Confidence            9999999987

>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}

Probab=99.79  E-value=6e-19  Score=146.63  Aligned_cols=123  Identities=12%  Similarity=0.159  Sum_probs=104.0

Q ss_pred             ccccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhh
Q 020637          152 LSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELET  231 (323)
Q Consensus       152 l~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~  231 (323)
                      +...++.|+|....+++++++++++.+|+++|.+++++++||+|++.++++|+||..|++..+.....            
T Consensus        20 l~~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~~~~------------   87 (148)
T 3lv9_A           20 FEEKKIREIMVPRTDMVCIYESDSEEKILAILKEEGVTRYPVCRKNKDDILGFVHIRDLYNQKINENK------------   87 (148)
T ss_dssp             GGTCBGGGTSEETTTCCCEETTCCHHHHHHHHHHSCCSEEEEESSSTTSEEEEEEHHHHHHHHHHHSC------------
T ss_pred             cCCCCHHHccccHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHHHHhcCCC------------
Confidence            56899999995334899999999999999999999999999999533899999999999765532210            


Q ss_pred             hhHHHHHHHHHHhhcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeecccccc
Q 020637          232 HTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (323)
Q Consensus       232 ~~i~~~~~~~~~~~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~  311 (323)
                                         ..+.++| ++++++.+++++.+|+.+|.+++++++||+|+   .|   +++||||..||++
T Consensus        88 -------------------~~v~~~m-~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~---~g---~~~Giit~~dil~  141 (148)
T 3lv9_A           88 -------------------IELEEIL-RDIIYISENLTIDKALERIRKEKLQLAIVVDE---YG---GTSGVVTIEDILE  141 (148)
T ss_dssp             -------------------CCGGGTC-BCCEEEETTSBHHHHHHHHHHHTCSEEEEECT---TS---SEEEEEEHHHHHH
T ss_pred             -------------------ccHHHhc-CCCeEECCCCCHHHHHHHHHhcCCeEEEEEeC---CC---CEEEEEEHHHHHH
Confidence                               0122368 88999999999999999999999999999985   35   8999999999998


Q ss_pred             c
Q 020637          312 C  312 (323)
Q Consensus       312 ~  312 (323)
                      +
T Consensus       142 ~  142 (148)
T 3lv9_A          142 E  142 (148)
T ss_dssp             H
T ss_pred             H
Confidence            6

>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}

Probab=99.79  E-value=2.4e-19  Score=146.42  Aligned_cols=123  Identities=16%  Similarity=0.180  Sum_probs=100.5

Q ss_pred             cccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhH
Q 020637          155 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTI  234 (323)
Q Consensus       155 ~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i  234 (323)
                      .++.|+|....+++++++++++.+|+++|.+++++++||+|++.++++|+||.+|+++.+...    ..+.     .   
T Consensus         2 ~~v~~iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVv~~~~~~lvGivt~~dl~~~~~~~----~~~~-----~---   69 (130)
T 3hf7_A            2 VSVNDIMVPRNEIVGIDINDDWKSIVRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEK----KEFT-----K---   69 (130)
T ss_dssp             CBHHHHSEEGGGCCEEETTSCHHHHHHHHHTCSSSEEEEESSSGGGEEEEEEHHHHHHHHTSS----SCCC-----H---
T ss_pred             cCHHHhCccHHHEEEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCCcEEEEEEHHHHHHHHhcc----Cccc-----h---
Confidence            578899954467999999999999999999999999999975468999999999997655321    0110     0   


Q ss_pred             HHHHHHHHHhhcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637          235 SAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (323)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~  312 (323)
                      ..+.+                +| ++++++.+++++.+|+.+|.+++++++||+|+   .|   +++||||..||+++
T Consensus        70 ~~v~~----------------~m-~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~---~g---~lvGiit~~Dil~~  124 (130)
T 3hf7_A           70 EIMLR----------------AA-DEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDE---YG---DIQGLVTVEDILEE  124 (130)
T ss_dssp             HHHHH----------------HS-BCCCEEETTCBHHHHHHHHHHHCCCEEEEECT---TS---CEEEEEEHHHHHHH
T ss_pred             hhHHH----------------hc-cCCeEeCCCCcHHHHHHHHHhcCCeEEEEEcC---CC---CEEEEeeHHHHHHH
Confidence            01111                47 56789999999999999999999999999985   35   89999999999986

>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}

Probab=99.78  E-value=6.3e-19  Score=150.88  Aligned_cols=128  Identities=16%  Similarity=0.184  Sum_probs=103.8

Q ss_pred             ccccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhh
Q 020637          152 LSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELET  231 (323)
Q Consensus       152 l~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~  231 (323)
                      |...++.|+|....+++++.+++++.+|+++|.+++++++||+|++.++++|+||..|++..+....    ..       
T Consensus        39 l~~~~v~diM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~~~----~~-------  107 (172)
T 3lhh_A           39 LDERTISSLMVPRSDIVFLDLNLPLDANLRTVMQSPHSRFPVCRNNVDDMVGIISAKQLLSESIAGE----RL-------  107 (172)
T ss_dssp             ----CTTTTSEEGGGCCCEETTSCHHHHHHHHHTCCCSEEEEESSSTTSEEEEEEHHHHHHHHHTTC----CC-------
T ss_pred             cCCCCHHHhCccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEEHHHHHHHHhhcC----cc-------
Confidence            5678999999544789999999999999999999999999999853389999999999976553210    00       


Q ss_pred             hhHHHHHHHHHHhhcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeecccccc
Q 020637          232 HTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (323)
Q Consensus       232 ~~i~~~~~~~~~~~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~  311 (323)
                                          .+.++| ++++++.+++++.+|+.+|.+++++++||+|+   .|   +++||||..||++
T Consensus       108 --------------------~v~~im-~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~---~g---~lvGiit~~Dil~  160 (172)
T 3lhh_A          108 --------------------ELVDLV-KNCNFVPNSLSGMELLEHFRTTGSQMVFVVDE---YG---DLKGLVTLQDMMD  160 (172)
T ss_dssp             --------------------CGGGGC-BCCEEEETTCCHHHHHHHHHHHTCSEEEEECT---TS---CEEEEEEHHHHHH
T ss_pred             --------------------cHHHHh-cCCeEeCCCCCHHHHHHHHHHcCCeEEEEEeC---CC---CEEEEeeHHHHHH
Confidence                                112368 88999999999999999999999999999985   35   7999999999999


Q ss_pred             c--cccCc
Q 020637          312 C--KHFLH  317 (323)
Q Consensus       312 ~--~~f~~  317 (323)
                      +  ..+..
T Consensus       161 ~l~~~~~d  168 (172)
T 3lhh_A          161 ALTGEFFQ  168 (172)
T ss_dssp             HHHTTCC-
T ss_pred             HHhCCCcc
Confidence            8  55544

>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}

Probab=99.77  E-value=3.7e-19  Score=144.28  Aligned_cols=122  Identities=16%  Similarity=0.255  Sum_probs=98.0

Q ss_pred             ccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhh
Q 020637          154 THTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHT  233 (323)
Q Consensus       154 ~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~  233 (323)
                      +.++.|+|....+++++++++++.+|+++|.+++++++||+|++.++++|+||..|+++.+..   .....         
T Consensus         2 ~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~~---~~~~~---------   69 (127)
T 3nqr_A            2 DQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRS---DAEAF---------   69 (127)
T ss_dssp             -CBHHHHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGST---TCCCC---------
T ss_pred             CcCHHHhcccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHhc---cCCCC---------
Confidence            467889994335599999999999999999999999999999633899999999999653321   10000         


Q ss_pred             HHHHHHHHHHhhcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637          234 ISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (323)
Q Consensus       234 i~~~~~~~~~~~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~  312 (323)
                        .+.+                +|++ ++++.+++++.+|+.+|.+++++++||+|+   .|   +++||||..||+++
T Consensus        70 --~v~~----------------~m~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~g---~~~Giit~~dll~~  123 (127)
T 3nqr_A           70 --SMDK----------------VLRT-AVVVPESKRVDRMLKEFRSQRYHMAIVIDE---FG---GVSGLVTIEDILEL  123 (127)
T ss_dssp             --CHHH----------------HCBC-CCEEETTCBHHHHHHHHHHTTCCEEEEECT---TS---CEEEEEEHHHHHHH
T ss_pred             --CHHH----------------HcCC-CeEECCCCcHHHHHHHHHhcCCeEEEEEeC---CC---CEEEEEEHHHHHHH
Confidence              0111                4755 679999999999999999999999999985   35   89999999999975

>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}

Probab=99.77  E-value=4.8e-19  Score=148.38  Aligned_cols=128  Identities=14%  Similarity=0.196  Sum_probs=104.0

Q ss_pred             ccccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeE-eCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhh
Q 020637          152 LSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLW-DDFKGRFVGVLSALDFILILRELGTNGSNLTEEELE  230 (323)
Q Consensus       152 l~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~-d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~  230 (323)
                      |...++.|+|....+++++.+++++.+|+++|.+++++++||+ |.+.++++|+||.+|++..+.....           
T Consensus        17 l~~~~v~~iM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVv~d~~~~~lvGivt~~dl~~~~~~~~~-----------   85 (153)
T 3oco_A           17 MNDKVASDVMVDRTSMSVVDVDETIADALLLYLEEQYSRFPVTADNDKDKIIGYAYNYDIVRQARIDDK-----------   85 (153)
T ss_dssp             HHHCBHHHHSEEGGGCCCEETTSBHHHHHHHHHHHCCSEEEEEETTEEEEEEEEEEHHHHHHHHHHHTT-----------
T ss_pred             cCCCEeeeEecchhheEEEcCCCCHHHHHHHHHhCCCCEEEEEECCCCCcEEEEEEHHHHHhHHhcCCC-----------
Confidence            4678999999432489999999999999999999999999999 6434899999999999765532110           


Q ss_pred             hhhHHHHHHHHHHhhcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccc
Q 020637          231 THTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDIL  310 (323)
Q Consensus       231 ~~~i~~~~~~~~~~~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl  310 (323)
                                          ..+.++| ++++++.+++++.+|+.+|.+++++++||+|+   .|   +++||||..||+
T Consensus        86 --------------------~~v~~~m-~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~---~g---~~vGivt~~dil  138 (153)
T 3oco_A           86 --------------------AKISTIM-RDIVSVPENMKVPDVMEEMSAHRVPMAIVIDE---YG---GTSGIITDKDVY  138 (153)
T ss_dssp             --------------------SBGGGTC-BCCEEEETTSBHHHHHHHHHHTTCSCEEEECT---TS---CEEEEECHHHHH
T ss_pred             --------------------CcHHHHh-CCCeEECCCCCHHHHHHHHHHcCCcEEEEEeC---CC---CEEEEeeHHHHH
Confidence                                0122378 88999999999999999999999999999985   35   899999999999


Q ss_pred             cc--cccCc
Q 020637          311 KC--KHFLH  317 (323)
Q Consensus       311 ~~--~~f~~  317 (323)
                      ++  ..+..
T Consensus       139 ~~l~~~~~d  147 (153)
T 3oco_A          139 EELFGNLRD  147 (153)
T ss_dssp             HHHHC----
T ss_pred             HHHhccCCC
Confidence            98  44433

>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}

Probab=99.76  E-value=3.7e-19  Score=146.29  Aligned_cols=123  Identities=12%  Similarity=0.172  Sum_probs=100.0

Q ss_pred             ccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhh
Q 020637          154 THTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHT  233 (323)
Q Consensus       154 ~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~  233 (323)
                      +.++.|+|....+++++.+++++.+|+++|.+++++++||+|.+.++++|+||.+|+++.+..   ..  .  .      
T Consensus         2 ~~~v~~iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~~---~~--~--~------   68 (136)
T 3lfr_A            2 DLQVRDIMVPRSQMISIKATQTPREFLPAVIDAAHSRYPVIGESHDDVLGVLLAKDLLPLILK---AD--G--D------   68 (136)
T ss_dssp             -CBHHHHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGGS---SS--G--G------
T ss_pred             CCChHhccccHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHHh---cc--C--C------
Confidence            467899995446899999999999999999999999999999633799999999999653321   00  0  0      


Q ss_pred             HHHHHHHHHHhhcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637          234 ISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (323)
Q Consensus       234 i~~~~~~~~~~~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~  312 (323)
                                      ...+.++|++ ++++.+++++.+|+.+|.+++++++||+|+   .|   +++||||..||+++
T Consensus        69 ----------------~~~v~~~m~~-~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~---~g---~lvGiit~~Dil~~  124 (136)
T 3lfr_A           69 ----------------SDDVKKLLRP-ATFVPESKRLNVLLREFRANHNHMAIVIDE---YG---GVAGLVTIEDVLEQ  124 (136)
T ss_dssp             ----------------GCCGGGTCBC-CCEEETTCBHHHHHHHHHHHTCCEEEEECT---TS---CEEEEEEHHHHHTT
T ss_pred             ----------------CcCHHHHcCC-CeEECCCCcHHHHHHHHHhcCCeEEEEEeC---CC---CEEEEEEHHHHHHH
Confidence                            0012236865 899999999999999999999999999985   35   89999999999998

>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}

Probab=99.76  E-value=2e-18  Score=148.56  Aligned_cols=122  Identities=13%  Similarity=0.121  Sum_probs=102.8

Q ss_pred             ccccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhh
Q 020637          152 LSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELET  231 (323)
Q Consensus       152 l~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~  231 (323)
                      |...++.|+|....+++++++++++.+|+++|.+++++++||+|.+.++++|+||.+|++..+.....            
T Consensus        33 l~~~~v~diM~~~~~v~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~lvGivt~~Dl~~~~~~~~~------------  100 (173)
T 3ocm_A           33 LAERSIRSIMTPRTDVSWVNIDDDAATIRQQLTAAPHSFFPVCRGSLDEVVGIGRAKDLVADLITEGR------------  100 (173)
T ss_dssp             HTTSCSTTTSEEGGGCCCEETTSCHHHHHHHHHHSSCSEEEEESSSTTSEEEEEEHHHHHHHHHHHSS------------
T ss_pred             cCCCCHHHhCCcHHHeEEEeCCCCHHHHHHHHHhCCCCEEEEEeCCCCCEEEEEEHHHHHHHHhcCCc------------
Confidence            57799999995446799999999999999999999999999998644899999999999765432100            


Q ss_pred             hhHHHHHHHHHHhhcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeecccccc
Q 020637          232 HTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (323)
Q Consensus       232 ~~i~~~~~~~~~~~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~  311 (323)
                                         ..+.  |.+++++|.+++++.+|+.+|.+++++++||+|+   .|   +++||||..||++
T Consensus       101 -------------------~~v~--~~~~~~~v~~~~~l~~al~~m~~~~~~~~~Vvde---~g---~lvGiIT~~Dil~  153 (173)
T 3ocm_A          101 -------------------VRRN--RLRDPIIVHESIGILRLMDTLKRSRGQLVLVADE---FG---AIEGLVTPIDVFE  153 (173)
T ss_dssp             -------------------CCGG--GSBCCCEECGGGCHHHHHHHHHHSTTCCEEEECT---TC---CEEEEECHHHHHH
T ss_pred             -------------------chhH--hcCCCeEECCCCcHHHHHHHHHHcCCeEEEEEeC---CC---CEEEEEeHHHHHH
Confidence                               0012  3467789999999999999999999999999985   35   8999999999999


Q ss_pred             c
Q 020637          312 C  312 (323)
Q Consensus       312 ~  312 (323)
                      +
T Consensus       154 ~  154 (173)
T 3ocm_A          154 A  154 (173)
T ss_dssp             H
T ss_pred             H
Confidence            8

>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}

Probab=99.75  E-value=7.7e-19  Score=142.95  Aligned_cols=121  Identities=17%  Similarity=0.258  Sum_probs=99.0

Q ss_pred             cccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhh
Q 020637          153 STHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETH  232 (323)
Q Consensus       153 ~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~  232 (323)
                      ...++.|+|....+++++.+++++.+|+++|.+++++++||+|++.++++|+||..|+++.+.   . . ..        
T Consensus         3 ~~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~---~-~-~~--------   69 (129)
T 3jtf_A            3 AERTVADIMVPRSRMDLLDISQPLPQLLATIIETAHSRFPVYEDDRDNIIGILLAKDLLRYML---E-P-AL--------   69 (129)
T ss_dssp             -CCBHHHHCEEGGGCCCEETTSCHHHHHHHHHHSCCSEEEEESSSTTCEEEEEEGGGGGGGGT---C-T-TS--------
T ss_pred             CCCCHHHhCccHHHeEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCcEEEEEEHHHHHhHhc---c-C-Cc--------
Confidence            467889999544788999999999999999999999999999953489999999999854321   1 0 00        


Q ss_pred             hHHHHHHHHHHhhcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637          233 TISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (323)
Q Consensus       233 ~i~~~~~~~~~~~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~  312 (323)
                                         .+.++|++ ++++.+++++.+|+.+|.+++++++||+|+   .|   +++||||..||+++
T Consensus        70 -------------------~v~~~m~~-~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~---~g---~~~Giit~~Dil~~  123 (129)
T 3jtf_A           70 -------------------DIRSLVRP-AVFIPEVKRLNVLLREFRASRNHLAIVIDE---HG---GISGLVTMEDVLEQ  123 (129)
T ss_dssp             -------------------CGGGGCBC-CCEEETTCBHHHHHHHHHTSSCCEEEEECC----C---CEEEEEEHHHHHHH
T ss_pred             -------------------CHHHHhCC-CeEeCCCCcHHHHHHHHHhcCCeEEEEEeC---CC---CEEEEEEHHHHHHH
Confidence                               01225754 789999999999999999999999999985   35   89999999999986

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*

Probab=99.75  E-value=2e-18  Score=145.41  Aligned_cols=133  Identities=15%  Similarity=0.188  Sum_probs=107.5

Q ss_pred             HHhhhhhccccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCC
Q 020637          145 RDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNL  224 (323)
Q Consensus       145 ~~~~~~~l~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l  224 (323)
                      ...+.+.|...++.|+|.  . .+++.+++++.+|+++|.++++..+||+|+ +++++|+||..|++..+.....    .
T Consensus         7 ~~~l~~~l~~~~v~~im~--~-~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~-~~~~~Givt~~dl~~~~~~~~~----~   78 (159)
T 3fv6_A            7 TQLLADKLKKLQVKDFQS--I-PVVIHENVSVYDAICTMFLEDVGTLFVVDR-DAVLVGVLSRKDLLRASIGQQE----L   78 (159)
T ss_dssp             CHHHHHHHTTCBGGGSCB--C-CCEEETTSBHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHHHHTSCSC----T
T ss_pred             HHHHHHHHhhCCHHHHcC--C-CEEECCCCcHHHHHHHHHHCCCCEEEEEcC-CCcEEEEEeHHHHHHHhhccCc----c
Confidence            346778889999999994  3 569999999999999999999999999995 6899999999999765521100    0


Q ss_pred             ChhhhhhhhHHHHHHHHHHhhcccccCCCCCCCCC--CcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEE
Q 020637          225 TEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPR--PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILY  302 (323)
Q Consensus       225 ~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~im~~--~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvG  302 (323)
                           ..                   ..+.++|.+  +++++.++++|.+|+.+|.+++++++||+|+  +++ ..+++|
T Consensus        79 -----~~-------------------~~v~~~m~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~--~g~-~~~~vG  131 (159)
T 3fv6_A           79 -----TS-------------------VPVHIIMTRMPNITVCRREDYVMDIAKHLIEKQIDALPVIKD--TDK-GFEVIG  131 (159)
T ss_dssp             -----TT-------------------CBGGGTSEETTSCCCBCTTSBHHHHHHHHHHHTCSEEEEEEE--CSS-SEEEEE
T ss_pred             -----cC-------------------cCHHHHHcCCCCcEEECCCCCHHHHHHHHHHcCCcEEEEEeC--CCc-ceeEEE
Confidence                 00                   012236877  8999999999999999999999999999996  220 015999


Q ss_pred             Eeeccccccc
Q 020637          303 LASLSDILKC  312 (323)
Q Consensus       303 IIT~~dIl~~  312 (323)
                      |||..||+++
T Consensus       132 iit~~dil~~  141 (159)
T 3fv6_A          132 RVTKTNMTKI  141 (159)
T ss_dssp             EEEHHHHHHH
T ss_pred             EEEHHHHHHH
Confidence            9999999999

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A

Probab=99.75  E-value=1.2e-17  Score=137.44  Aligned_cols=119  Identities=17%  Similarity=0.162  Sum_probs=101.1

Q ss_pred             cccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCC--eEEEEEehHHHHHHHHhhcCCCCCCChhhhhhh
Q 020637          155 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKG--RFVGVLSALDFILILRELGTNGSNLTEEELETH  232 (323)
Q Consensus       155 ~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~--~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~  232 (323)
                      .++.|+|  +.+++++.+++++.+|+++|.+++++.+||+|+ ++  +++|+||..|++..+..-..    .        
T Consensus         5 ~~v~~im--~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-~~~~~~~Givt~~dl~~~~~~~~~----~--------   69 (141)
T 2rih_A            5 IRTSELL--KRPPVSLPETATIREVATELAKNRVGLAVLTAR-DNPKRPVAVVSERDILRAVAQRLD----L--------   69 (141)
T ss_dssp             CBGGGGC--CSCCEEEETTCBHHHHHHHHHHHTCSEEEEEET-TEEEEEEEEEEHHHHHHHHHTTCC----T--------
T ss_pred             eEHHHHh--cCCCeEeCCCCcHHHHHHHHHHcCCCEEEEEcC-CCcceeEEEEEHHHHHHHHhcCCC----C--------
Confidence            6789999  468999999999999999999999999999995 67  99999999999765532100    0        


Q ss_pred             hHHHHHHHHHHhhcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637          233 TISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (323)
Q Consensus       233 ~i~~~~~~~~~~~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~  312 (323)
                                       ...+.++|.++++++.++ ++.+|+.+|.+++++++||+|+   +|   +++||||..||+++
T Consensus        70 -----------------~~~v~~~m~~~~~~v~~~-~l~~a~~~m~~~~~~~l~Vvd~---~g---~~~Giit~~dll~~  125 (141)
T 2rih_A           70 -----------------DGPAMPIANSPITVLDTD-PVHVAAEKMRRHNIRHVVVVNK---NG---ELVGVLSIRDLCFE  125 (141)
T ss_dssp             -----------------TSBSGGGCBCCCEEETTS-BHHHHHHHHHHHTCSEEEEECT---TS---CEEEEEEHHHHHSC
T ss_pred             -----------------CCCHHHHcCCCCeEEcCC-CHHHHHHHHHHcCCeEEEEEcC---CC---cEEEEEEHHHHHHH
Confidence                             001234788999999999 9999999999999999999984   35   89999999999998

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1

Probab=99.75  E-value=4.1e-18  Score=138.57  Aligned_cols=127  Identities=14%  Similarity=0.224  Sum_probs=104.3

Q ss_pred             ccccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhh
Q 020637          152 LSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELET  231 (323)
Q Consensus       152 l~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~  231 (323)
                      |...++.|+|  ..+++++.+++++.+|+++|.+++++.+||+|  +++++|+||..|++..+......  .        
T Consensus         1 l~~~~v~~im--~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd--~~~~~Givt~~dl~~~~~~~~~~--~--------   66 (133)
T 2ef7_A            1 MEEEIVKEYM--KTQVISVTKDAKLNDIAKVMTEKNIGSVIVVD--GNKPVGIITERDIVKAIGKGKSL--E--------   66 (133)
T ss_dssp             CCCCBGGGTS--BCSCCEEETTCBHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHHHHTTCCT--T--------
T ss_pred             CCcccHHHhc--cCCCEEECCCCcHHHHHHHHHhcCCCEEEEEE--CCEEEEEEcHHHHHHHHhcCCCc--c--------
Confidence            4567899999  46799999999999999999999999999999  57999999999997655421100  0        


Q ss_pred             hhHHHHHHHHHHhhcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeecccccc
Q 020637          232 HTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (323)
Q Consensus       232 ~~i~~~~~~~~~~~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~  311 (323)
                                         ..+.++|.++++++.++++|.+|+.+|.+++++++||+|+   +|   +++|+||..||++
T Consensus        67 -------------------~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~---~g---~~~Giit~~dll~  121 (133)
T 2ef7_A           67 -------------------TKAEEFMTASLITIREDSPITGALALMRQFNIRHLPVVDD---KG---NLKGIISIRDITR  121 (133)
T ss_dssp             -------------------CBGGGTSEECCCCEETTSBHHHHHHHHHHHTCSEEEEECT---TS---CEEEEEEHHHHHH
T ss_pred             -------------------cCHHHHcCCCCEEECCCCCHHHHHHHHHHcCCCEEEEECC---CC---eEEEEEEHHHHHH
Confidence                               0122368888999999999999999999999999999985   35   7999999999999


Q ss_pred             c--cccCc
Q 020637          312 C--KHFLH  317 (323)
Q Consensus       312 ~--~~f~~  317 (323)
                      +  .++.+
T Consensus       122 ~~~~~~~~  129 (133)
T 2ef7_A          122 AIDDMFET  129 (133)
T ss_dssp             HHHHHC--
T ss_pred             HHHHHHHH
Confidence            8  44443

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*

Probab=99.75  E-value=5e-18  Score=141.35  Aligned_cols=122  Identities=11%  Similarity=0.215  Sum_probs=100.9

Q ss_pred             cccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhH
Q 020637          155 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTI  234 (323)
Q Consensus       155 ~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i  234 (323)
                      .++.|+|....+++++.+++++.+|+++|.++++..+||+|+ +|+++|+||..|+++.+.....    .     ...  
T Consensus        28 ~~v~dim~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~-~~~~~Givt~~dl~~~~~~~~~----~-----~~~--   95 (149)
T 3k2v_A           28 LRVNDIMHTGDEIPHVGLQATLRDALLEITRKNLGMTAICDD-DMNIIGIFTDGDLRRVFDTGVD----M-----RDA--   95 (149)
T ss_dssp             SBGGGTSBCGGGSCEECTTCBHHHHHHHHHHHTSSEEEEECT-TCBEEEEEEHHHHHHHHCSSSC----C-----TTC--
T ss_pred             cCHHHHhcCCCCCeEECCCCcHHHHHHHHHhCCCcEEEEECC-CCcEEEEecHHHHHHHHhcCCC----c-----ccC--
Confidence            589999942228999999999999999999999999999995 6899999999999876542110    0     000  


Q ss_pred             HHHHHHHHHhhcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637          235 SAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (323)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~  312 (323)
                       .+.                ++|.++++++.++++|.+|+.+|.+++++++||+|+    +   +++||||..||+++
T Consensus        96 -~v~----------------~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~----~---~~~Giit~~dil~a  149 (149)
T 3k2v_A           96 -SIA----------------DVMTRGGIRIRPGTLAVDALNLMQSRHITCVLVADG----D---HLLGVVHMHDLLRA  149 (149)
T ss_dssp             -BHH----------------HHSEESCCEECTTCBHHHHHHHHHHHTCSEEEEEET----T---EEEEEEEHHHHTCC
T ss_pred             -cHH----------------HHcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEecC----C---EEEEEEEHHHhhcC
Confidence             011                258888999999999999999999999999999985    3   79999999999975

>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1

Probab=99.75  E-value=6.7e-18  Score=153.98  Aligned_cols=149  Identities=15%  Similarity=0.151  Sum_probs=107.8

Q ss_pred             hccccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCC-CCeEEEEEehHHHHHHHHhhc-CCCC---C--
Q 020637          151 FLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDF-KGRFVGVLSALDFILILRELG-TNGS---N--  223 (323)
Q Consensus       151 ~l~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~-~~~~vGilT~~D~i~~l~~~~-~~~~---~--  223 (323)
                      .+...+|.|+|  +++++++.++++|.+|.++|.+++++++||+|++ .++++|+||.+||+.++.... ....   .  
T Consensus         9 ~~~~~~v~diM--t~~vvtv~~~~tv~~~~~lm~~~~~~~~PVVd~~~~~~LvGiIt~~dl~~~l~~~~~~~~~~~~~~~   86 (250)
T 2d4z_A            9 NKYNIQVGDIM--VRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRRISAYRRQPAAAA   86 (250)
T ss_dssp             CCSSCBTTSSS--BSSCCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHHTTSSSCCCCC
T ss_pred             ccCCCChHHhc--CCCCeEECCCCCHHHHHHHHHhcCCCEEEEEecCCCCeEEEEEEHHHHHHHHHHhhhhhhhhhhhhh
Confidence            34578899999  6899999999999999999999999999999964 368999999999998765321 0000   0  


Q ss_pred             ------------------------CChhh---------------------------------------------------
Q 020637          224 ------------------------LTEEE---------------------------------------------------  228 (323)
Q Consensus       224 ------------------------l~~~~---------------------------------------------------  228 (323)
                                              +....                                                   
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (250)
T 2d4z_A           87 EADEEGRNGETGASFTGEAESSFAYIDQEDAEGQQREGLEAVKVQTEDPRPPSPVPAEEPTQTSGIYQKKQKGTGQVASR  166 (250)
T ss_dssp             CBCCC---------------------------------------------------------------------------
T ss_pred             cccccccccccccccccCCcceeeeccccccccccccCccccCCcccCCccccccccccccccccccccccccccccCcc
Confidence                                    00000                                                   


Q ss_pred             ----hhhhhHHHHHHHHHHhhcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEe
Q 020637          229 ----LETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLA  304 (323)
Q Consensus       229 ----l~~~~i~~~~~~~~~~~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGII  304 (323)
                          +....+..|.+.  .+.  ...+....+|...+++|.++++|.+|+.+|.+.|++++||++.    |   +|||||
T Consensus       167 ~~~~i~~~~~~~~~~~--~l~--~~Vdl~~~~md~sP~tv~~~tsL~~v~~LF~~lglr~l~V~~~----G---rLVGIV  235 (250)
T 2d4z_A          167 FEEMLTLEEIYRWEQR--EKN--VVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTSM----G---KLVGVV  235 (250)
T ss_dssp             CCSCCBHHHHHHHHHH--HTT--CBCCTTSSCEECCSCCBCTTCBHHHHHHHHHHHTCSEEEEEET----T---EEEEEE
T ss_pred             cccccChhhhhhHHHH--hcC--ceeccccccccCCCeEECCCCcHHHHHHHHHHhCCeEEEEEEC----C---EEEEEE
Confidence                000001112111  111  0000011358899999999999999999999999999999984    5   899999


Q ss_pred             eccccccc
Q 020637          305 SLSDILKC  312 (323)
Q Consensus       305 T~~dIl~~  312 (323)
                      |.+||+++
T Consensus       236 TrkDl~ka  243 (250)
T 2d4z_A          236 ALAEIQAA  243 (250)
T ss_dssp             EHHHHHHH
T ss_pred             EHHHHHHH
Confidence            99999997

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*

Probab=99.74  E-value=3.8e-18  Score=136.52  Aligned_cols=116  Identities=19%  Similarity=0.360  Sum_probs=99.7

Q ss_pred             ccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHH
Q 020637          156 TVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTIS  235 (323)
Q Consensus       156 ~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~  235 (323)
                      ++.|+|  +++++++.+++++.+|++.|.++++..+||+|+ +|+++|+||..|++..+.....                
T Consensus         2 ~v~~im--~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-~~~~~G~vt~~dl~~~~~~~~~----------------   62 (122)
T 3kpb_A            2 LVKDIL--SKPPITAHSNISIMEAAKILIKHNINHLPIVDE-HGKLVGIITSWDIAKALAQNKK----------------   62 (122)
T ss_dssp             BHHHHC--CSCCCCEETTSBHHHHHHHHHHHTCSCEEEECT-TSBEEEEECHHHHHHHHHTTCC----------------
T ss_pred             chHHhh--CCCCEEeCCCCcHHHHHHHHHHcCCCeEEEECC-CCCEEEEEEHHHHHHHHHhccc----------------
Confidence            577889  467899999999999999999999999999994 7899999999999765542100                


Q ss_pred             HHHHHHHHhhcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637          236 AWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (323)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~  312 (323)
                                      .+.++|.++++++.+++++.+|+.+|.+++++++||+|+   .|   +++|+||..||+++
T Consensus        63 ----------------~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~---~g---~~~Givt~~dl~~~  117 (122)
T 3kpb_A           63 ----------------TIEEIMTRNVITAHEDEPVDHVAIKMSKYNISGVPVVDD---YR---RVVGIVTSEDISRL  117 (122)
T ss_dssp             ----------------BGGGTSBSSCCCEETTSBHHHHHHHHHHHTCSEEEEECT---TC---BEEEEEEHHHHHHH
T ss_pred             ----------------CHHHHhcCCCeEECCCCCHHHHHHHHHHhCCCeEEEECC---CC---CEEEEEeHHHHHHH
Confidence                            012368889999999999999999999999999999985   35   89999999999987

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1

Probab=99.74  E-value=7.6e-18  Score=137.81  Aligned_cols=132  Identities=20%  Similarity=0.292  Sum_probs=105.6

Q ss_pred             hccccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhh
Q 020637          151 FLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELE  230 (323)
Q Consensus       151 ~l~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~  230 (323)
                      .|...++.|+|  +.+++++.+++++.+|+++|.++++.++||+|+ +|+++|+||..|+++.+.   ......      
T Consensus         3 ~l~~~~v~~im--~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-~~~~~Givt~~dl~~~~~---~~~~~~------   70 (138)
T 2yzi_A            3 MDMKAPIKVYM--TKKLLGVKPSTSVQEASRLMMEFDVGSLVVIND-DGNVVGFFTKSDIIRRVI---VPGLPY------   70 (138)
T ss_dssp             CCTTSBGGGTC--BCCCCEECTTSBHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHHHTT---TTCCCT------
T ss_pred             chhhhhHHHHh--cCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcC-CCcEEEEEeHHHHHHHHH---hcCCcc------
Confidence            35678999999  478999999999999999999999999999995 689999999999863221   110000      


Q ss_pred             hhhHHHHHHHHHHhhcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccc
Q 020637          231 THTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDIL  310 (323)
Q Consensus       231 ~~~i~~~~~~~~~~~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl  310 (323)
                                         ...+.++|.++++++.+++++.+|+.+|.+++++++ |+|+   +|   +++||||..||+
T Consensus        71 -------------------~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~l-Vvd~---~g---~~~Giit~~dil  124 (138)
T 2yzi_A           71 -------------------DIPVERIMTRNLITANVNTPLGEVLRKMAEHRIKHI-LIEE---EG---KIVGIFTLSDLL  124 (138)
T ss_dssp             -------------------TSBGGGTCBCSCCEEETTSBHHHHHHHHHHHTCSEE-EEEE---TT---EEEEEEEHHHHH
T ss_pred             -------------------cCCHHHHhhCCCeEECCCCcHHHHHHHHHhcCCCEE-EECC---CC---CEEEEEEHHHHH
Confidence                               001223788899999999999999999999999999 9985   35   899999999999


Q ss_pred             cc--cccCcccc
Q 020637          311 KC--KHFLHSLG  320 (323)
Q Consensus       311 ~~--~~f~~~~~  320 (323)
                      ++  ..+...++
T Consensus       125 ~~~~~~~~~~~~  136 (138)
T 2yzi_A          125 EASRRRLETAIS  136 (138)
T ss_dssp             HHHHCCSCCC--
T ss_pred             HHHHHHHHhhcc
Confidence            98  55555443

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}

Probab=99.74  E-value=2.2e-18  Score=139.75  Aligned_cols=121  Identities=16%  Similarity=0.171  Sum_probs=101.5

Q ss_pred             cccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhh
Q 020637          153 STHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETH  232 (323)
Q Consensus       153 ~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~  232 (323)
                      .+.++.++|  .++++++++++++.+|++.|.+++++.+||+|+  ++++|+||..|+++.+.   .....         
T Consensus         3 ~s~~v~~~m--~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~--~~~~Givt~~dl~~~~~---~~~~~---------   66 (128)
T 3gby_A            3 ASVTFSYLA--ETDYPVFTLGGSTADAARRLAASGCACAPVLDG--ERYLGMVHLSRLLEGRK---GWPTV---------   66 (128)
T ss_dssp             TTCBGGGGC--BCCSCCEETTSBHHHHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHTTCS---SSCCT---------
T ss_pred             cceEHHHhh--cCCcceECCCCCHHHHHHHHHHCCCcEEEEEEC--CEEEEEEEHHHHHHHHh---hCCcc---------
Confidence            467899999  577999999999999999999999999999994  89999999999964221   10000         


Q ss_pred             hHHHHHHHHHHhhcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637          233 TISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (323)
Q Consensus       233 ~i~~~~~~~~~~~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~  312 (323)
                                       ...+.++|.++++++.++++|.+|+.+|.+++++++||+|+   +|   +++||||..||+++
T Consensus        67 -----------------~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~---~g---~~~Giit~~dll~~  123 (128)
T 3gby_A           67 -----------------KEKLGEELLETVRSYRPGEQLFDNLISVAAAKCSVVPLADE---DG---RYEGVVSRKRILGF  123 (128)
T ss_dssp             -----------------TCBCCGGGCBCCCCBCTTSBGGGSHHHHHHCSSSEEEEECT---TC---BEEEEEEHHHHHHH
T ss_pred             -----------------cCcHHHHccCCCcEECCCCCHHHHHHHHHhCCCcEEEEECC---CC---CEEEEEEHHHHHHH
Confidence                             00133478999999999999999999999999999999984   35   89999999999987

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}

Probab=99.74  E-value=3.6e-18  Score=144.74  Aligned_cols=128  Identities=15%  Similarity=0.219  Sum_probs=106.2

Q ss_pred             hhccccccccccCCC-CCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhh
Q 020637          150 SFLSTHTVYELLPDS-GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEE  228 (323)
Q Consensus       150 ~~l~~~~~~dvmp~s-~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~  228 (323)
                      ..|...++.|+|... .+++++++++++.+|+++|.++++..+||+|+ +|+++|+||..|+++.+......        
T Consensus        19 ~~l~~~~v~dim~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~-~~~~~Givt~~dl~~~~~~~~~~--------   89 (165)
T 3fhm_A           19 FQGMATFVKDLLDRKGRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDA-DGVVLGIFTERDLVKAVAGQGAA--------   89 (165)
T ss_dssp             CSSSSCBHHHHHHHHCSCCCEECTTSBHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHHHHHHHGGG--------
T ss_pred             HhhhhcCHHHHhccCCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcC-CCeEEEEEEHHHHHHHHHhcCCc--------
Confidence            345679999999421 46999999999999999999999999999995 68999999999998765432100        


Q ss_pred             hhhhhHHHHHHHHHHhhcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccc
Q 020637          229 LETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSD  308 (323)
Q Consensus       229 l~~~~i~~~~~~~~~~~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~d  308 (323)
                      .        .           ...+.++|.++++++.++++|.+|+.+|.+++++++||+|+    |   +++||||..|
T Consensus        90 ~--------~-----------~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~----g---~~~Giit~~d  143 (165)
T 3fhm_A           90 S--------L-----------QQSVSVAMTKNVVRCQHNSTTDQLMEIMTGGRFRHVPVEEN----G---RLAGIISIGD  143 (165)
T ss_dssp             G--------G-----------TSBGGGTSBSSCCCBCTTCBHHHHHHHHHHHTCSEEEEEET----T---EEEEEEEHHH
T ss_pred             c--------c-----------cCCHHHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC----C---EEEEEEEHHH
Confidence            0        0           00123478899999999999999999999999999999983    5   8999999999


Q ss_pred             cccc
Q 020637          309 ILKC  312 (323)
Q Consensus       309 Il~~  312 (323)
                      |+++
T Consensus       144 il~~  147 (165)
T 3fhm_A          144 VVKA  147 (165)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9998

>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}

Probab=99.74  E-value=2e-18  Score=142.89  Aligned_cols=138  Identities=17%  Similarity=0.255  Sum_probs=103.5

Q ss_pred             cccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhh
Q 020637          153 STHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETH  232 (323)
Q Consensus       153 ~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~  232 (323)
                      +..++.|+|....+++++++++++.+|+++|.++++..+||+|+ +++++|+||..|++..+...    ...  ..+.  
T Consensus         3 ~~~~v~~im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-~~~~~G~vt~~dl~~~~~~~----~~~--~~~~--   73 (152)
T 4gqw_A            3 GVYTVGEFMTKKEDLHVVKPTTTVDEALELLVENRITGFPVIDE-DWKLVGLVSDYDLLALDSGD----STW--KTFN--   73 (152)
T ss_dssp             CCSBGGGTSEESTTCCCBCTTSBHHHHHHHHHHTTCSEEEEECT-TCBEEEEEEHHHHTTCC--------CC--HHHH--
T ss_pred             ceEEhhhccCCCCCCeEECCCCcHHHHHHHHHHcCCceEEEEeC-CCeEEEEEEHHHHHHhhccc----Ccc--cchH--
Confidence            46789999954447999999999999999999999999999995 68999999999996422110    000  0000  


Q ss_pred             hHHHHHHHHHHhhcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637          233 TISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (323)
Q Consensus       233 ~i~~~~~~~~~~~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~  312 (323)
                         .+......    .....+.++|.++++++.++++|.+|+.+|.+++++++||+|+   +|   +++||||.+||+++
T Consensus        74 ---~~~~~~~~----~~~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~---~g---~~~Giit~~dil~~  140 (152)
T 4gqw_A           74 ---AVQKLLSK----TNGKLVGDLMTPAPLVVEEKTNLEDAAKILLETKYRRLPVVDS---DG---KLVGIITRGNVVRA  140 (152)
T ss_dssp             ---HHHTC---------CCBHHHHSEESCCCEESSSBHHHHHHHHHHSSCCEEEEECT---TS---BEEEEEEHHHHHHH
T ss_pred             ---HHHHHHHH----hccccHHHhcCCCceEECCCCcHHHHHHHHHHCCCCEEEEECC---CC---cEEEEEEHHHHHHH
Confidence               00000000    0011123468888999999999999999999999999999984   35   89999999999998

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1

Probab=99.73  E-value=2.3e-17  Score=132.29  Aligned_cols=118  Identities=22%  Similarity=0.292  Sum_probs=98.8

Q ss_pred             ccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHH
Q 020637          156 TVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTIS  235 (323)
Q Consensus       156 ~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~  235 (323)
                      ++.|+|  +.+++++++++++.+|+++|.+++++.+||+|  +|+++|+||..|+++.+.....    .     ...   
T Consensus         2 ~v~~~m--~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd--~~~~~G~it~~dl~~~~~~~~~----~-----~~~---   65 (125)
T 1pbj_A            2 RVEDVM--VTDVDTIDITASLEDVLRNYVENAKGSSVVVK--EGVRVGIVTTWDVLEAIAEGDD----L-----AEV---   65 (125)
T ss_dssp             CHHHHC--BCSCCEEETTCBHHHHHHHHHHHCCCEEEEEE--TTEEEEEEEHHHHHHHHHHTCC----T-----TTS---
T ss_pred             CHHHhc--CCCceEECCCCcHHHHHHHHHHcCCCEEEEEe--CCeeEEEEeHHHHHHHHhcCCc----c-----ccc---
Confidence            567888  46899999999999999999999999999999  5899999999999865543111    0     000   


Q ss_pred             HHHHHHHHhhcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637          236 AWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (323)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~  312 (323)
                      .+.                ++|.++++++.+++++.+|+.+|.+++++++||+|+    |   +++|+||.+||+++
T Consensus        66 ~v~----------------~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~----~---~~~Gvit~~dl~~~  119 (125)
T 1pbj_A           66 KVW----------------EVMERDLVTISPRATIKEAAEKMVKNVVWRLLVEED----D---EIIGVISATDILRA  119 (125)
T ss_dssp             BHH----------------HHCBCGGGEECTTSCHHHHHHHHHHHTCSEEEEEET----T---EEEEEEEHHHHHHH
T ss_pred             CHH----------------HHcCCCCeEECCCCCHHHHHHHHHhcCCcEEEEEEC----C---EEEEEEEHHHHHHH
Confidence            011                257888999999999999999999999999999983    5   89999999999987

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}

Probab=99.73  E-value=9e-19  Score=149.39  Aligned_cols=146  Identities=17%  Similarity=0.275  Sum_probs=103.5

Q ss_pred             ccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCC--CCC-Ch--hh
Q 020637          154 THTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNG--SNL-TE--EE  228 (323)
Q Consensus       154 ~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~--~~l-~~--~~  228 (323)
                      ..+|.|+|....+++++.+++++.+|+++|.+++++++||+|+ +++++|+||..|+++.+.......  ..+ ..  ..
T Consensus         3 ~~~v~dim~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~-~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~   81 (180)
T 3sl7_A            3 GYTVGDFMTPRQNLHVVKPSTSVDDALELLVEKKVTGLPVIDD-NWTLVGVVSDYDLLALDSISGRSQNDTNLFPDVDST   81 (180)
T ss_dssp             CCBHHHHSEEGGGCCCBCTTSBHHHHHHHHHHHTCSEEEEECT-TCBEEEEEEHHHHTCC-------------------C
T ss_pred             ceeHHHhcCCCCCceeeCCCCcHHHHHHHHHHcCCCeEEEECC-CCeEEEEEEHHHHHhhhhhccccCCcccccccccch
Confidence            4678999953337999999999999999999999999999995 689999999999974321110000  000 00  00


Q ss_pred             hhhhhHHHHHHHHHHhhcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccc
Q 020637          229 LETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSD  308 (323)
Q Consensus       229 l~~~~i~~~~~~~~~~~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~d  308 (323)
                      +.  ...........    .....+.++|.++++++.++++|.+|+.+|.+++++++||+|+   +|   +++||||++|
T Consensus        82 ~~--~~~~~~~~~~~----~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~g---~~vGiit~~d  149 (180)
T 3sl7_A           82 WK--TFNELQKLISK----TYGKVVGDLMTPSPLVVRDSTNLEDAARLLLETKFRRLPVVDA---DG---KLIGILTRGN  149 (180)
T ss_dssp             CC--SHHHHHHHHHT----TTTCBHHHHSEESCCCEETTSBHHHHHHHHTTSTTCEEEEECT---TC---BEEEEEEHHH
T ss_pred             hh--hhHHHHHHHhc----cccccHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCEEEEECC---CC---eEEEEEEHHH
Confidence            00  00111111100    0111234579999999999999999999999999999999984   35   8999999999


Q ss_pred             cccc
Q 020637          309 ILKC  312 (323)
Q Consensus       309 Il~~  312 (323)
                      |+++
T Consensus       150 il~~  153 (180)
T 3sl7_A          150 VVRA  153 (180)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9998

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}

Probab=99.73  E-value=9.6e-18  Score=137.04  Aligned_cols=126  Identities=16%  Similarity=0.281  Sum_probs=102.3

Q ss_pred             hhhccccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHH-HHHHHhhcCCCCCCChh
Q 020637          149 SSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDF-ILILRELGTNGSNLTEE  227 (323)
Q Consensus       149 ~~~l~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~-i~~l~~~~~~~~~l~~~  227 (323)
                      .++|...++.++|  +++++++.+++++.+|+++|.++++.++||+|+ +++++|+||..|+ +..+.....  ..    
T Consensus         2 ~~~l~~~~v~~im--~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-~~~~~Givt~~dl~~~~~~~~~~--~~----   72 (138)
T 2p9m_A            2 IDTLKNIKVKDVM--TKNVITAKRHEGVVEAFEKMLKYKISSLPVIDD-ENKVIGIVTTTDIGYNLIRDKYT--LE----   72 (138)
T ss_dssp             ---CTTCBGGGTS--BCSCCCEETTSBHHHHHHHHHHHTCCEEEEECT-TCBEEEEEEHHHHHHHHTTTCCC--SS----
T ss_pred             ccccccCCHHHhh--cCCceEECCCCcHHHHHHHHHHCCCcEEEEECC-CCeEEEEEEHHHHHHHHHhhccc--CC----
Confidence            3567889999999  568999999999999999999999999999995 6899999999999 764431100  00    


Q ss_pred             hhhhhhHHHHHHHHHHhhcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcC-----CCEEeEEecCCCCCCcccEEE
Q 020637          228 ELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNK-----VATVPIIHSTGPAGSCQEILY  302 (323)
Q Consensus       228 ~l~~~~i~~~~~~~~~~~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~-----i~rlPVvD~~~~~g~~~~lvG  302 (323)
                          .   .+.                ++|.++++++.+++++.+|+.+|.+++     ++++||+|+   +|   +++|
T Consensus        73 ----~---~v~----------------~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~l~Vvd~---~g---~~~G  123 (138)
T 2p9m_A           73 ----T---TIG----------------DVMTKDVITIHEDASILEAIKKMDISGKKEEIINQLPVVDK---NN---KLVG  123 (138)
T ss_dssp             ----C---BHH----------------HHSCSSCCCEETTSBHHHHHHHHTCC-----CCCEEEEECT---TS---BEEE
T ss_pred             ----c---CHH----------------HHhCCCcEEECCCCCHHHHHHHHHhcCCccccccEEEEECC---CC---eEEE
Confidence                0   011                258888999999999999999999999     999999984   35   8999


Q ss_pred             Eeeccccccc
Q 020637          303 LASLSDILKC  312 (323)
Q Consensus       303 IIT~~dIl~~  312 (323)
                      +||..||+++
T Consensus       124 iit~~dll~~  133 (138)
T 2p9m_A          124 IISDGDIIRT  133 (138)
T ss_dssp             EEEHHHHHHH
T ss_pred             EEEHHHHHHH
Confidence            9999999986

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1

Probab=99.73  E-value=1.1e-17  Score=136.55  Aligned_cols=121  Identities=19%  Similarity=0.259  Sum_probs=99.0

Q ss_pred             ccccccC-CCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhH
Q 020637          156 TVYELLP-DSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTI  234 (323)
Q Consensus       156 ~~~dvmp-~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i  234 (323)
                      ++.|+|. ...+++++.+++++.+|+++|.++++..+||+|  +++++|+||..|+++.+...   ....     .    
T Consensus         7 ~v~~im~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd--~~~~~Givt~~dl~~~~~~~---~~~~-----~----   72 (135)
T 2rc3_A            7 TVKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMK--DEKLVGILTERDFSRKSYLL---DKPV-----K----   72 (135)
T ss_dssp             BHHHHHHHHCCCCCEECTTSBHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHHGGGS---SSCG-----G----
T ss_pred             eHHHHHhcCCCCcEEECCCCcHHHHHHHHHhcCCCEEEEEE--CCEEEEEEehHHHHHHHHHc---CCCc-----c----
Confidence            7889992 116899999999999999999999999999998  57999999999996432211   0000     0    


Q ss_pred             HHHHHHHHHhhcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637          235 SAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (323)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~  312 (323)
                                     ...+.++|.++++++.++++|.+|+.+|.+++++++||+|+    |   +++||||..||+++
T Consensus        73 ---------------~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~----g---~~~Giit~~dll~~  128 (135)
T 2rc3_A           73 ---------------DTQVKEIMTRQVAYVDLNNTNEDCMALITEMRVRHLPVLDD----G---KVIGLLSIGDLVKD  128 (135)
T ss_dssp             ---------------GSBGGGTSBCSCCCBCTTCBHHHHHHHHHHHTCSEEEEEET----T---EEEEEEEHHHHHHH
T ss_pred             ---------------cCCHHHhccCCCeEECCCCcHHHHHHHHHHhCCCEEEEEeC----C---EEEEEEEHHHHHHH
Confidence                           00123478899999999999999999999999999999983    5   89999999999987

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1

Probab=99.72  E-value=2e-17  Score=139.64  Aligned_cols=130  Identities=15%  Similarity=0.190  Sum_probs=103.3

Q ss_pred             cccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhh
Q 020637          153 STHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETH  232 (323)
Q Consensus       153 ~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~  232 (323)
                      ...++.|+|  +++++++.+++++.+|+++|.+++++++||+|+ +|+++|+||..|++..+.......  .  ..    
T Consensus         3 ~~~~v~dim--~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~-~~~lvGivt~~dl~~~~~~~~~~~--~--~~----   71 (160)
T 2o16_A            3 LMIKVEDMM--TRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDA-NKKLLGIVSQRDLLAAQESSLQRS--A--QG----   71 (160)
T ss_dssp             CCCBGGGTS--EESCCCBCTTSBHHHHHHHHHHHTCSEEEEECT-TCBEEEEEEHHHHHHHHHHHCC-------------
T ss_pred             CcCcHHHHh--cCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcC-CCcEEEEEeHHHHHHHHHHhhccc--c--cc----
Confidence            356889999  468999999999999999999999999999995 689999999999987655321100  0  00    


Q ss_pred             hHHHHHHHHHHhhcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637          233 TISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (323)
Q Consensus       233 ~i~~~~~~~~~~~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~  312 (323)
                           ....       ....+.++|.++++++.++++|.+|+.+|.+++++++||+|+    |   +++||||.+||+++
T Consensus        72 -----~~~~-------~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~----g---~lvGiit~~dil~~  132 (160)
T 2o16_A           72 -----DSLA-------FETPLFEVMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVAK----D---VLVGIITDSDFVTI  132 (160)
T ss_dssp             ----------------CCCBHHHHSCSCEEEBCTTSBHHHHHHHHHHTTCSCEEEEET----T---EEEEEECHHHHHHH
T ss_pred             -----cchh-------cccCHHHHhcCCCeEECCCCCHHHHHHHHHHhCCCEEEEEEC----C---EEEEEEEHHHHHHH
Confidence                 0000       000112368899999999999999999999999999999983    5   89999999999998

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*

Probab=99.72  E-value=6.7e-18  Score=144.74  Aligned_cols=151  Identities=12%  Similarity=0.126  Sum_probs=105.5

Q ss_pred             hhccccccccccCCCCC--eEEE--ecchhHHHHHHHHHHCCCCeeeeE--eCCCCeEEEEEehHHHHHHHHhhcCCCCC
Q 020637          150 SFLSTHTVYELLPDSGK--VTAL--DVNLAVKQAFHVLYEQGLPMVPLW--DDFKGRFVGVLSALDFILILRELGTNGSN  223 (323)
Q Consensus       150 ~~l~~~~~~dvmp~s~~--vv~v--d~~~~v~~A~~~l~~~~i~~lPV~--d~~~~~~vGilT~~D~i~~l~~~~~~~~~  223 (323)
                      .++...++.|+|....+  ++++  ++++++.+|+++|.+++++++||+  | +.++++|+||..|++..+.........
T Consensus         6 ~~~~~~~v~dim~~~~~~~~~~v~~~~~~~~~~a~~~~~~~~~~~~pVv~~d-~~~~lvGiit~~dl~~~~~~~~~~~~~   84 (185)
T 2j9l_A            6 EFAHKTLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSR-ESQRLVGFVLRRDLIISIENARKKQDG   84 (185)
T ss_dssp             ---CCCBHHHHSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCT-TTCBEEEEEEHHHHHHHHHHHHTSCSC
T ss_pred             hhhccCcHHHHhcccccCceEEEecCCCccHHHHHHHHHhcCCCceeEEEEC-CCCeEEEEEEHHHHHHHHHhhcccCCC
Confidence            56788999999953322  7778  999999999999999999999999  5 478999999999998866532110000


Q ss_pred             CChhhhhhhhHHHHHHHHHHhhcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEE
Q 020637          224 LTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYL  303 (323)
Q Consensus       224 l~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGI  303 (323)
                      +....+....  ..... .... ......+.++|.++++++.++++|.+|+.+|.+++++++||+|+    |   +++||
T Consensus        85 ~~~~~~~~~~--~~~~~-~~~~-~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~----g---~~vGi  153 (185)
T 2j9l_A           85 VVSTSIIYFT--EHSPP-LPPY-TPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTHN----G---RLLGI  153 (185)
T ss_dssp             CCTTCEEECS--SSCCC-CCTT-CCCCEECGGGEESSCCEEETTSBHHHHHHHHHHHTCSEEEEEET----T---EEEEE
T ss_pred             ccccceeecc--cCCcc-cccc-cccCccHHHhhCcCCeEeCCCCCHHHHHHHHHhCCCcEEEEEEC----C---EEEEE
Confidence            0000000000  00000 0000 00011234579889999999999999999999999999999983    5   89999


Q ss_pred             eeccccccc
Q 020637          304 ASLSDILKC  312 (323)
Q Consensus       304 IT~~dIl~~  312 (323)
                      ||.+||+++
T Consensus       154 it~~dll~~  162 (185)
T 2j9l_A          154 ITKKDVLKH  162 (185)
T ss_dssp             EEHHHHHHH
T ss_pred             EEHHHHHHH
Confidence            999999998

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0

Probab=99.72  E-value=3.4e-18  Score=142.06  Aligned_cols=130  Identities=18%  Similarity=0.178  Sum_probs=104.5

Q ss_pred             hccccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhh
Q 020637          151 FLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELE  230 (323)
Q Consensus       151 ~l~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~  230 (323)
                      .|...++.|+|....+++++.+++++.+|+++|.++++.++||+|+ +|+++|+||..|++..+....    ........
T Consensus        11 ~l~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVvd~-~~~~~Givt~~dl~~~~~~~~----~~~~~~~~   85 (150)
T 3lqn_A           11 EFQQIFVKDLMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDP-MYKLHGLISTAMILDGILGLE----RIEFERLE   85 (150)
T ss_dssp             HHHHCBHHHHSEEGGGSCCBCTTSBHHHHHHHHHHHTCSEEEEECT-TCBEEEEEEHHHHHHHTBCSS----SBCGGGGG
T ss_pred             hhhcCChhhcccCCCceEEECCCCcHHHHHHHHHHcCCcEEEEECC-CCCEEEEEEHHHHHHHHHhhc----ccchhHHh
Confidence            3567899999954457999999999999999999999999999995 789999999999976543111    11000000


Q ss_pred             hhhHHHHHHHHHHhhcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccc
Q 020637          231 THTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDIL  310 (323)
Q Consensus       231 ~~~i~~~~~~~~~~~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl  310 (323)
                                         ...+.++|.++++++.++++|.+|+.+|.++++  +||+|+   +|   +++||||..||+
T Consensus        86 -------------------~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~--l~Vvd~---~g---~~~Giit~~dil  138 (150)
T 3lqn_A           86 -------------------EMKVEQVMKQDIPVLKLEDSFAKALEMTIDHPF--ICAVNE---DG---YFEGILTRRAIL  138 (150)
T ss_dssp             -------------------GCBGGGTCBSSCCEEETTCBHHHHHHHHHHCSE--EEEECT---TC---BEEEEEEHHHHH
T ss_pred             -------------------cCCHHHHhcCCCceeCCCCCHHHHHHHHHhCCE--EEEECC---CC---cEEEEEEHHHHH
Confidence                               011234789999999999999999999999997  999984   35   899999999999


Q ss_pred             cc
Q 020637          311 KC  312 (323)
Q Consensus       311 ~~  312 (323)
                      ++
T Consensus       139 ~~  140 (150)
T 3lqn_A          139 KL  140 (150)
T ss_dssp             HH
T ss_pred             HH
Confidence            98

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.72  E-value=3e-17  Score=137.80  Aligned_cols=137  Identities=15%  Similarity=0.208  Sum_probs=104.3

Q ss_pred             hhhhccccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCe-eeeEeCCCCeEEEEEehHHHHHHHHhh----cCCCC
Q 020637          148 ISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPM-VPLWDDFKGRFVGVLSALDFILILREL----GTNGS  222 (323)
Q Consensus       148 ~~~~l~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~-lPV~d~~~~~~vGilT~~D~i~~l~~~----~~~~~  222 (323)
                      ..+-+...++.|+|  +.+++++.+++++.+|+++|.+++++. +||+|+ + +++|+||..|++..+...    .... 
T Consensus         9 ~~~~~~~~~v~~im--~~~~~~v~~~~tl~ea~~~m~~~~~~~~~~Vvd~-~-~~vGivt~~dl~~~~~~~~~~~~~~~-   83 (157)
T 1o50_A            9 HHHHMKVKDVCKLI--SLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARD-N-KLVGMIPVMHLLKVSGFHFFGFIPKE-   83 (157)
T ss_dssp             -CTTCBHHHHTTSS--CCCCEEECTTCBHHHHHHHHHHSTTCCEEEEEET-T-EEEEEEEHHHHHHHHHHHHHCCCC---
T ss_pred             hhhhhccccHhhcc--cCCCceECCCCCHHHHHHHHHhCCCCccEEEEEC-C-EEEEEEEHHHHHHHHhhhHHhhhccH-
Confidence            34456778999999  578999999999999999999999999 999995 5 999999999998765421    0000 


Q ss_pred             CCChhhhhhhhHHHHHHHHHHhhcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEE
Q 020637          223 NLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILY  302 (323)
Q Consensus       223 ~l~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvG  302 (323)
                          ..+.        ..   .. ......+.++|.+ ++++.++++|.+|+.+|.+++++++||+|+   +|   +++|
T Consensus        84 ----~~~~--------~~---~~-~~~~~~v~~im~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~g---~~vG  140 (157)
T 1o50_A           84 ----ELIR--------SS---MK-RLIAKNASEIMLD-PVYVHMDTPLEEALKLMIDNNIQEMPVVDE---KG---EIVG  140 (157)
T ss_dssp             -----------------C---CC-CCSSCBHHHHCBC-CCCBCTTSBHHHHHHHHHHHTCSEEEEECT---TS---CEEE
T ss_pred             ----HHHH--------HH---HH-HHcCCcHHHHcCC-CeEECCCCCHHHHHHHHHHCCCcEEEEEcC---CC---EEEE
Confidence                0000        00   00 0000011236888 999999999999999999999999999984   35   7999


Q ss_pred             Eeeccccccc
Q 020637          303 LASLSDILKC  312 (323)
Q Consensus       303 IIT~~dIl~~  312 (323)
                      |||..||+++
T Consensus       141 iit~~dll~~  150 (157)
T 1o50_A          141 DLNSLEILLA  150 (157)
T ss_dssp             EEEHHHHHHH
T ss_pred             EEEHHHHHHH
Confidence            9999999987

>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}

Probab=99.72  E-value=6.5e-18  Score=142.12  Aligned_cols=122  Identities=16%  Similarity=0.190  Sum_probs=99.3

Q ss_pred             ccccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhh
Q 020637          152 LSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELET  231 (323)
Q Consensus       152 l~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~  231 (323)
                      |...++.|+|....+++++.+++++.+|+++|.+++++++||+|++.++++|+||..|++..+.   ..         ..
T Consensus        35 l~~~~v~diM~~~~~~~~v~~~~~i~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~---~~---------~~  102 (156)
T 3oi8_A           35 FSDLEVRDAMITRSRMNVLKENDSIERITAYVIDTAHSRFPVIGEDKDEVLGILHAKDLLKYMF---NP---------EQ  102 (156)
T ss_dssp             HTTCBGGGTCEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGSS---CG---------GG
T ss_pred             cCCCCHhheeeeHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHHHHH---cC---------Cc
Confidence            5689999999533479999999999999999999999999999963359999999999854221   10         00


Q ss_pred             hhHHHHHHHHHHhhcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeecccccc
Q 020637          232 HTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (323)
Q Consensus       232 ~~i~~~~~~~~~~~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~  311 (323)
                      .   .+.+                +|++ ++++.+++++.+|+.+|.+++++++||+|+   .|   +++||||..||++
T Consensus       103 ~---~v~~----------------im~~-~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~---~g---~~~Givt~~Dile  156 (156)
T 3oi8_A          103 F---HLKS----------------ILRP-AVFVPEGKSLTALLKEFREQRNHMAIVIDE---YG---GTSGLVTFEDIIE  156 (156)
T ss_dssp             C---CHHH----------------HCBC-CCEEETTSBHHHHHHHHHHTTCCEEEEECT---TS---SEEEEEEHHHHCC
T ss_pred             c---cHHH----------------HcCC-CEEECCCCCHHHHHHHHHhcCCeEEEEECC---CC---CEEEEEEHHHhcC
Confidence            0   1111                4754 789999999999999999999999999985   35   8999999999974

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A

Probab=99.72  E-value=8.4e-18  Score=136.70  Aligned_cols=124  Identities=17%  Similarity=0.251  Sum_probs=98.8

Q ss_pred             hccccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHH-HHHhhcCCCCCCChhhh
Q 020637          151 FLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL-ILRELGTNGSNLTEEEL  229 (323)
Q Consensus       151 ~l~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~-~l~~~~~~~~~l~~~~l  229 (323)
                      .++..++.|+|  +.+++++.+++++.+|+++|.+++++++||+|+ +++++|+||..|++. .+..-.    ..     
T Consensus         4 ~~~~~~v~~im--~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-~~~~~Givt~~dl~~~~~~~~~----~~-----   71 (133)
T 1y5h_A            4 PFTMTTARDIM--NAGVTCVGEHETLTAAAQYMREHDIGALPICGD-DDRLHGMLTDRDIVIKGLAAGL----DP-----   71 (133)
T ss_dssp             ----CCHHHHS--EETCCCEETTSBHHHHHHHHHHHTCSEEEEECG-GGBEEEEEEHHHHHHTTGGGTC----CT-----
T ss_pred             hhhhcCHHHHh--cCCceEeCCCCCHHHHHHHHHHhCCCeEEEECC-CCeEEEEEeHHHHHHHHHhcCC----Cc-----
Confidence            34557889999  468899999999999999999999999999985 689999999999863 222110    00     


Q ss_pred             hhhhHHHHHHHHHHhhcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeecccc
Q 020637          230 ETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDI  309 (323)
Q Consensus       230 ~~~~i~~~~~~~~~~~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dI  309 (323)
                      ...   .+.                ++|.++++++.+++++.+|+.+|.+++++++||+|+    |   +++|+||.+||
T Consensus        72 ~~~---~v~----------------~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~----g---~~~Giit~~di  125 (133)
T 1y5h_A           72 NTA---TAG----------------ELARDSIYYVDANASIQEMLNVMEEHQVRRVPVISE----H---RLVGIVTEADI  125 (133)
T ss_dssp             TTS---BHH----------------HHHTTCCCCEETTCCHHHHHHHHHHHTCSEEEEEET----T---EEEEEEEHHHH
T ss_pred             ccc---CHH----------------HHhcCCCEEECCCCCHHHHHHHHHHcCCCEEEEEEC----C---EEEEEEEHHHH
Confidence            000   111                257788999999999999999999999999999983    5   89999999999


Q ss_pred             ccc
Q 020637          310 LKC  312 (323)
Q Consensus       310 l~~  312 (323)
                      +++
T Consensus       126 l~~  128 (133)
T 1y5h_A          126 ARH  128 (133)
T ss_dssp             HHT
T ss_pred             HHH
Confidence            986

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}

Probab=99.71  E-value=1.4e-17  Score=139.82  Aligned_cols=133  Identities=11%  Similarity=0.080  Sum_probs=100.8

Q ss_pred             ccccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeC-CCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhh
Q 020637          152 LSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDD-FKGRFVGVLSALDFILILRELGTNGSNLTEEELE  230 (323)
Q Consensus       152 l~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~-~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~  230 (323)
                      +...++.|+|  +.+++++.+++++.+|+++|.+++++++||+|+ ++++++|+||..|++..+......  ..   ...
T Consensus        10 ~~~~~v~dim--~~~~~~v~~~~~~~~a~~~~~~~~~~~~pVvd~~~~~~~~Givt~~dl~~~~~~~~~~--~~---~~~   82 (164)
T 2pfi_A           10 SHHVRVEHFM--NHSITTLAKDTPLEEVVKVVTSTDVTEYPLVESTESQILVGIVQRAQLVQALQAEPPS--RA---PGH   82 (164)
T ss_dssp             CCSCBHHHHC--BCCCCCEETTCBHHHHHHHHHTCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHC------------CC
T ss_pred             ccCCCHHHHc--CCCCeEECCCCcHHHHHHHHHhCCCCceeEEecCCCCEEEEEEEHHHHHHHHHhhccc--cC---Ccc
Confidence            4567899999  568999999999999999999999999999985 368999999999998765421110  00   000


Q ss_pred             hhhHHHHHHHHHHhhcccccCCCCCCCCCC-cEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeecccc
Q 020637          231 THTISAWKVGKLQLNLKRQMDGNGRPCPRP-LVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDI  309 (323)
Q Consensus       231 ~~~i~~~~~~~~~~~~~~~~~~~~~im~~~-~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dI  309 (323)
                      ...   +.+....-           .+..+ ++++.++++|.+|+.+|.+++++++||+|+    |   +++||||.+||
T Consensus        83 ~~~---v~~~m~~~-----------~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~----g---~l~Giit~~di  141 (164)
T 2pfi_A           83 QQC---LQDILARG-----------CPTEPVTLTLFSETTLHQAQNLFKLLNLQSLFVTSR----G---RAVGCVSWVEM  141 (164)
T ss_dssp             CCB---HHHHHHTT-----------CCCBCCCCCEETTCBHHHHHHHHHHTTCSEEEEEET----T---EEEEEEEHHHH
T ss_pred             cch---hhhhhccc-----------ccccCCceEECCCCcHHHHHHHHHHhCCCEEEEEEC----C---EEEEEEEHHHH
Confidence            001   22221110           11222 789999999999999999999999999983    5   89999999999


Q ss_pred             ccc
Q 020637          310 LKC  312 (323)
Q Consensus       310 l~~  312 (323)
                      +++
T Consensus       142 l~~  144 (164)
T 2pfi_A          142 KKA  144 (164)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            998

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*

Probab=99.70  E-value=3.1e-17  Score=147.83  Aligned_cols=150  Identities=16%  Similarity=0.230  Sum_probs=101.1

Q ss_pred             ccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCC------------
Q 020637          154 THTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNG------------  221 (323)
Q Consensus       154 ~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~------------  221 (323)
                      ..++.|+|  +++++++.+++++.+|+++|.+++++++||+|+ +|+++||||..|+++.+.......            
T Consensus         6 ~~~v~~im--~~~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~-~~~l~Giit~~di~~~~~~~~~~~~~~~~~~~~~~v   82 (245)
T 3l2b_A            6 KLKVEDLE--MDKIAPLAPEVSLKMAWNIMRDKNLKSIPVADG-NNHLLGMLSTSNITATYMDIWDSNILAKSATSLDNI   82 (245)
T ss_dssp             CCBGGGSC--CBCCCCBCTTCBHHHHHHHHHHTTCSEEEEECT-TCBEEEEEEHHHHHHHHHCCCCTTHHHHTTCCHHHH
T ss_pred             cCcHHHhc--CCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcC-CCEEEEEEEHHHHHHHHHHhhhhhhhhhccCCHHHH
Confidence            46789999  578999999999999999999999999999995 689999999999987654211000            


Q ss_pred             ------------------------CCCChhhhhh-------------hhH---------------------HHHHHHHHH
Q 020637          222 ------------------------SNLTEEELET-------------HTI---------------------SAWKVGKLQ  243 (323)
Q Consensus       222 ------------------------~~l~~~~l~~-------------~~i---------------------~~~~~~~~~  243 (323)
                                              ..+..+.+..             ...                     ..+......
T Consensus        83 ~~~l~~~~l~~~~~~~~~~g~~~i~a~~~~~~~~~~~~~~ivIvgdr~~~~~~~i~~~~~~liit~~~~~~~~v~~~a~~  162 (245)
T 3l2b_A           83 LDTLSAEAQNINEERKVFPGKVVVAAMQAESLKEFISEGDIAIAGDRAEIQAELIELKVSLLIVTGGHTPSKEIIELAKK  162 (245)
T ss_dssp             HHHTTCEEEECCTTCCCCCSCEEECCSCGGGGGGTCCTTCEEEECSCHHHHHHHHHTTCSEEEECTTCCCCHHHHHHHHH
T ss_pred             HHHhCCEEEeccCCcceeeeeEEEEeCChHHHHhcCCCCCEEEECCCHHHHHHHHHcCCCEEEECCCCCCCHHHHHHHHH
Confidence                                    0000000000             000                     000000000


Q ss_pred             hh---------------cccccCCCCCCCC-CCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeecc
Q 020637          244 LN---------------LKRQMDGNGRPCP-RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLS  307 (323)
Q Consensus       244 ~~---------------~~~~~~~~~~im~-~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~  307 (323)
                      ..               .......+.++|+ ++++++.+++++.+|+.+|.+++++++||+|+   +|   +++||||.+
T Consensus       163 ~~~~~i~t~~d~~~~~~~~~~~~~v~~im~~~~~~~~~~~~~~~~~~~~m~~~~~~~~pVvd~---~~---~~~Giit~~  236 (245)
T 3l2b_A          163 NNITVITTPHDSFTASRLIVQSLPVDYVMTKDNLVAVSTDDLVEDVKVTMSETRYSNYPVIDE---NN---KVVGSIARF  236 (245)
T ss_dssp             HTCEEEECSSCHHHHHHHGGGGSBHHHHSBCTTCCCEETTSBHHHHHHHHHHHCCSEEEEECT---TC---BEEEEEECC
T ss_pred             cCCeEEEeCCChHHHHHHHhcCCceeeEecCCccEEECCCCcHHHHHHHHHhcCCceEEEEcC---CC---eEEEEEEHH
Confidence            00               0001112345798 99999999999999999999999999999985   35   899999999


Q ss_pred             ccccc
Q 020637          308 DILKC  312 (323)
Q Consensus       308 dIl~~  312 (323)
                      ||+++
T Consensus       237 dll~~  241 (245)
T 3l2b_A          237 HLIST  241 (245)
T ss_dssp             -----
T ss_pred             Hhhch
Confidence            99987

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A

Probab=99.70  E-value=8.1e-17  Score=138.91  Aligned_cols=122  Identities=18%  Similarity=0.241  Sum_probs=101.8

Q ss_pred             cccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhH
Q 020637          155 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTI  234 (323)
Q Consensus       155 ~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i  234 (323)
                      .++.|+|  .+.++++.+++++.+|+++|.+++++++||+|+ +|+++|+||..|++..+......   .          
T Consensus         9 ~~v~~im--~~~~~~v~~~~~l~ea~~~~~~~~~~~~pVvd~-~g~~vGivt~~dl~~~~~~~~~~---~----------   72 (184)
T 1pvm_A            9 MRVEKIM--NSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDD-NGNDVGLLSERSIIKRFIPRNKK---P----------   72 (184)
T ss_dssp             CBGGGTS--BTTCCEEETTCBHHHHHHHHHHHTCCEEEEECT-TSCEEEEEEHHHHHHHTGGGCCC---G----------
T ss_pred             cCHHHhc--CCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcC-CCcEEEEEeHHHHHHHHhhcccC---c----------
Confidence            7899999  578999999999999999999999999999985 68999999999997544311000   0          


Q ss_pred             HHHHHHHHHhhcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637          235 SAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (323)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~  312 (323)
                         ..           ..+.++|.++++++.+++++.+|+.+|.+++++++||+|+   .|   +++||||..||+++
T Consensus        73 ---~~-----------~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~g---~~~Givt~~dll~~  130 (184)
T 1pvm_A           73 ---DE-----------VPIRLVMRKPIPKVKSDYDVKDVAAYLSENGLERCAVVDD---PG---RVVGIVTLTDLSRY  130 (184)
T ss_dssp             ---GG-----------SBGGGTSBSSCCEEETTCBHHHHHHHHHHHTCSEEEEECT---TC---CEEEEEEHHHHTTT
T ss_pred             ---cc-----------CCHHHHhCCCCcEECCCCCHHHHHHHHHHcCCcEEEEEcC---CC---eEEEEEEHHHHHHH
Confidence               00           0123478889999999999999999999999999999985   35   79999999999987

>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}

Probab=99.70  E-value=9.5e-17  Score=141.85  Aligned_cols=126  Identities=15%  Similarity=0.143  Sum_probs=105.5

Q ss_pred             HHHhhhhhc--cccccccccCCCCCeEEEecchhHHHHHHHHHHC---CCCeeeeEeCCCCeEEEEEehHHHHHHHHhhc
Q 020637          144 SRDRISSFL--STHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQ---GLPMVPLWDDFKGRFVGVLSALDFILILRELG  218 (323)
Q Consensus       144 ~~~~~~~~l--~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~---~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~  218 (323)
                      ++..+.+.|  ...++.++|  +..++++.++.++.+|++.|.++   ++..+||+|+ .++++|+||.+|++.    . 
T Consensus        41 e~~~i~~~l~~~~~~v~~iM--~~~~~~v~~~~tv~eal~~~~~~~~~~~~~~~Vvd~-~~~lvGivt~~dll~----~-  112 (205)
T 3kxr_A           41 QRQRFELYDQYSENEIGRYT--DHQMLVLSDKATVAQAQRFFRRIELDCNDNLFIVDE-ADKYLGTVRRYDIFK----H-  112 (205)
T ss_dssp             HHHHHHHHHHSCTTCGGGGC--BCCCCEEETTCBHHHHHHHHHHCCCTTCCEEEEECT-TCBEEEEEEHHHHTT----S-
T ss_pred             HHHHHHHHhCCCcchHHhhc--cCceEEECCCCcHHHHHHHHHhhCccCeeEEEEEcC-CCeEEEEEEHHHHHh----C-
Confidence            444455544  578999999  57899999999999999999998   8999999995 789999999999842    0 


Q ss_pred             CCCCCCChhhhhhhhHHHHHHHHHHhhcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcc
Q 020637          219 TNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQ  298 (323)
Q Consensus       219 ~~~~~l~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~  298 (323)
                       .. ..                           .+.++|.+++++|.+++++.+|+.+|.+++++++||+|+   .|   
T Consensus       113 -~~-~~---------------------------~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVD~---~g---  157 (205)
T 3kxr_A          113 -EP-HE---------------------------PLISLLSEDSRALTANTTLLDAAEAIEHSREIELPVIDD---AG---  157 (205)
T ss_dssp             -CT-TS---------------------------BGGGGCCSSCCCEETTSCHHHHHHHHHTSSCSEEEEECT---TS---
T ss_pred             -CC-cc---------------------------hHHHHhcCCCeEECCCCCHHHHHHHHHhcCCCEEEEEcC---CC---
Confidence             00 00                           122379999999999999999999999999999999985   35   


Q ss_pred             cEEEEeeccccccc
Q 020637          299 EILYLASLSDILKC  312 (323)
Q Consensus       299 ~lvGIIT~~dIl~~  312 (323)
                      +++||||..||+++
T Consensus       158 ~lvGiIT~~Dil~~  171 (205)
T 3kxr_A          158 ELIGRVTLRAATAL  171 (205)
T ss_dssp             BEEEEEEHHHHHHH
T ss_pred             eEEEEEEHHHHHHH
Confidence            89999999999988

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}

Probab=99.70  E-value=3.5e-17  Score=137.08  Aligned_cols=122  Identities=16%  Similarity=0.267  Sum_probs=99.9

Q ss_pred             cccccccCCC----CCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhh
Q 020637          155 HTVYELLPDS----GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELE  230 (323)
Q Consensus       155 ~~~~dvmp~s----~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~  230 (323)
                      .++.|+|...    ++++++++++++.+|+++|.++++..+||.|  +++++|+||..|+++.+.........       
T Consensus         7 ~~v~dim~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~V~~--~~~~~Givt~~dl~~~~~~~~~~~~~-------   77 (157)
T 4fry_A            7 TTVAQILKAKPDSGRTIYTVTKNDFVYDAIKLMAEKGIGALLVVD--GDDIAGIVTERDYARKVVLQERSSKA-------   77 (157)
T ss_dssp             CBHHHHHHHSTTTTCCCCEEETTSBHHHHHHHHHHHTCSEEEEES--SSSEEEEEEHHHHHHHSGGGTCCSSS-------
T ss_pred             HHHHHHHhcccccCCCCeEECCCCcHHHHHHHHHHcCCCEEEEee--CCEEEEEEEHHHHHHHHHhccCCccc-------
Confidence            4688888533    6789999999999999999999999999954  68999999999997655422110000       


Q ss_pred             hhhHHHHHHHHHHhhcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccc
Q 020637          231 THTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDIL  310 (323)
Q Consensus       231 ~~~i~~~~~~~~~~~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl  310 (323)
                       .   .+.                ++|.++++++.+++++.+|+.+|.+++++++||+|+    |   +++||||.+||+
T Consensus        78 -~---~v~----------------~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~----g---~~~Giit~~dil  130 (157)
T 4fry_A           78 -T---RVE----------------EIMTAKVRYVEPSQSTDECMALMTEHRMRHLPVLDG----G---KLIGLISIGDLV  130 (157)
T ss_dssp             -C---BHH----------------HHSBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEET----T---EEEEEEEHHHHH
T ss_pred             -c---CHH----------------HHcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEEC----C---EEEEEEEHHHHH
Confidence             0   111                258888999999999999999999999999999983    5   899999999999


Q ss_pred             cc
Q 020637          311 KC  312 (323)
Q Consensus       311 ~~  312 (323)
                      ++
T Consensus       131 ~~  132 (157)
T 4fry_A          131 KS  132 (157)
T ss_dssp             HH
T ss_pred             HH
Confidence            98

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*

Probab=99.69  E-value=3.9e-17  Score=148.42  Aligned_cols=136  Identities=11%  Similarity=0.247  Sum_probs=102.9

Q ss_pred             ccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHH
Q 020637          156 TVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTIS  235 (323)
Q Consensus       156 ~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~  235 (323)
                      ++.++|. +++++++++++|+.+|+++|.+++++++||+|+++++++|++|..||+..+...+..      ..+......
T Consensus         4 ~v~~~i~-~~~~~~v~~~~sl~~a~~~m~~~~~~~lpV~d~~~~~~~Givt~~di~~~~~~~~~~------~~~~~~~~~   76 (280)
T 3kh5_A            4 RVMKIAQ-NKKIVTVYPTTTIRKALMTMNENKYRRLPVVNAGNNKVVGIITSMDIVDFMGGGSKY------NLIREKHER   76 (280)
T ss_dssp             BGGGTSC-CSCCCCBCTTSBHHHHHHHHHHHCCCEEEEECTTTCBEEEEEEHHHHHHHTTTSGGG------HHHHTTSTT
T ss_pred             hHHHHhc-CCCcEEECCCCcHHHHHHHHHhCCCcEeeEEECCCCeEEEEEEHHHHHHHhcccchh------hhhhhcccc
Confidence            4556554 458999999999999999999999999999996578999999999998754321100      000000000


Q ss_pred             HHHHHHHHhhcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637          236 AWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (323)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~  312 (323)
                      .+...   +     ...++++|.++++++.+++++.+|+.+|.+++++++||+|+   .|   +++||+|..|++++
T Consensus        77 ~~~~~---~-----~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~---~~---~~~Givt~~dl~~~  139 (280)
T 3kh5_A           77 NFLAA---I-----NEPVREIMEENVITLKENADIDEAIETFLTKNVGGAPIVND---EN---QLISLITERDVIRA  139 (280)
T ss_dssp             CHHHH---T-----TSBGGGTSBCSCCCEETTCBHHHHHHHHHHTTCSEEEEECT---TC---BEEEEEEHHHHHHH
T ss_pred             chhHH---h-----hhhHHHhcCCCCEEECCCCCHHHHHHHHHhCCCCEEEEEcC---CC---EEEEEEEHHHHHHH
Confidence            01110   0     11245689999999999999999999999999999999985   35   79999999999987

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A

Probab=99.69  E-value=6.7e-17  Score=132.57  Aligned_cols=128  Identities=16%  Similarity=0.233  Sum_probs=94.6

Q ss_pred             ccccc---ccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhh
Q 020637          155 HTVYE---LLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELET  231 (323)
Q Consensus       155 ~~~~d---vmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~  231 (323)
                      .++.+   +|  ..+++++.+++++.+|+++|.+++++.+||+|+ +++++|+||..|++..+.......        ..
T Consensus         8 ~~v~~~~~~~--~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-~~~~~Givt~~dl~~~~~~~~~~~--------~~   76 (144)
T 2nyc_A            8 IPIGDLNIIT--QDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDE-NGYLINVYEAYDVLGLIKGGIYND--------LS   76 (144)
T ss_dssp             SBGGGSSCCB--CSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECT-TCBEEEEEEHHHHHHHHHTC------------CC
T ss_pred             cchhhcCCCC--CCCceEECCCCcHHHHHHHHHHcCcceeeEEcC-CCcEEEEEcHHHHHHHhccccccc--------CC
Confidence            44455   56  478999999999999999999999999999995 689999999999987654210000        00


Q ss_pred             hhHHHHHHHHHHhhcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeecccccc
Q 020637          232 HTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (323)
Q Consensus       232 ~~i~~~~~~~~~~~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~  311 (323)
                      .+   +.+.+....          .-..+++++.++++|.+|+.+|.+++++++||+|+   +|   +++||||.+||++
T Consensus        77 ~~---v~~~m~~~~----------~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~---~g---~~~Giit~~dil~  137 (144)
T 2nyc_A           77 LS---VGEALMRRS----------DDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDD---VG---RLVGVLTLSDILK  137 (144)
T ss_dssp             SB---HHHHHHHCC----------------CEECTTSBHHHHHHHHHHHTCSEEEEECT---TS---BEEEEEEHHHHHH
T ss_pred             cc---HHHHHhcCc----------cccCCCeEECCCCcHHHHHHHHHHCCCCEEEEECC---CC---CEEEEEEHHHHHH
Confidence            11   222211000          00026789999999999999999999999999985   35   8999999999998


Q ss_pred             c
Q 020637          312 C  312 (323)
Q Consensus       312 ~  312 (323)
                      +
T Consensus       138 ~  138 (144)
T 2nyc_A          138 Y  138 (144)
T ss_dssp             H
T ss_pred             H
Confidence            7

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}

Probab=99.68  E-value=5.3e-17  Score=135.63  Aligned_cols=129  Identities=19%  Similarity=0.196  Sum_probs=101.5

Q ss_pred             ccccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhh
Q 020637          152 LSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELET  231 (323)
Q Consensus       152 l~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~  231 (323)
                      |...++.|+|....+++++.++.++.+|+++|.+++++++||+|+ +|+++|+||..|++..+...    ..+.....  
T Consensus         8 l~~~~v~~im~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~-~~~~~Givt~~dl~~~~~~~----~~~~~~~~--   80 (157)
T 2emq_A            8 FMQMTVKPFLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDT-SYKLHGLISMTMMMDAILGL----ERIEFERL--   80 (157)
T ss_dssp             --CCBSTTTCEEGGGSCCBCTTSBHHHHHHHHHHSSSSEEEEECT-TCCEEEEEEHHHHHHHSBCS----SSBCGGGG--
T ss_pred             HhhCcHHhhccCCccceEECCCCcHHHHHHHHHHCCceEEEEEcC-CCCEEEEeeHHHHHHHHhcc----cccchHHh--
Confidence            567899999943338999999999999999999999999999995 68999999999997543210    00000000  


Q ss_pred             hhHHHHHHHHHHhhcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeecccccc
Q 020637          232 HTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (323)
Q Consensus       232 ~~i~~~~~~~~~~~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~  311 (323)
                            .           ...+.++|.++++++.++++|.+|+.+|.++++  +||+|+   +|   +++||||.+||++
T Consensus        81 ------~-----------~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~--l~Vvd~---~g---~~~Giit~~dil~  135 (157)
T 2emq_A           81 ------E-----------TMKVEEVMNRNIPRLRLDDSLMKAVGLIVNHPF--VCVEND---DG---YFAGIFTRREVLK  135 (157)
T ss_dssp             ------G-----------TCBGGGTCBCCCCEEETTSBHHHHHHHHHHSSE--EEEECS---SS---SEEEEEEHHHHHH
T ss_pred             ------c-----------CCcHHHHhCCCCceecCCCcHHHHHHHHhhCCE--EEEEcC---CC---eEEEEEEHHHHHH
Confidence                  0           011234788999999999999999999999988  999985   35   7999999999999


Q ss_pred             c
Q 020637          312 C  312 (323)
Q Consensus       312 ~  312 (323)
                      +
T Consensus       136 ~  136 (157)
T 2emq_A          136 Q  136 (157)
T ss_dssp             H
T ss_pred             H
Confidence            9

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.66  E-value=1.1e-16  Score=141.84  Aligned_cols=117  Identities=15%  Similarity=0.208  Sum_probs=99.7

Q ss_pred             cccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhh
Q 020637          153 STHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETH  232 (323)
Q Consensus       153 ~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~  232 (323)
                      ...+|.++|  ..+++++.+++++.+|+++|.+++++++||+|+ .++++|+||.+|+...+.    .            
T Consensus        11 ~~~~~~~~~--~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~-~~~l~Givt~~dl~~~~~----~------------   71 (213)
T 1vr9_A           11 HHMKVKKWV--TQDFPMVEESATVRECLHRMRQYQTNECIVKDR-EGHFRGVVNKEDLLDLDL----D------------   71 (213)
T ss_dssp             --CBGGGGC--BSCSCEEETTCBHHHHHHHHHHTTSSEEEEECT-TSBEEEEEEGGGGTTSCT----T------------
T ss_pred             cccCHHHhh--cCCCeEECCCCcHHHHHHHHHHCCCCEEEEEcC-CCEEEEEEEHHHHHhhcC----C------------
Confidence            456899999  678999999999999999999999999999995 689999999999842110    0            


Q ss_pred             hHHHHHHHHHHhhcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637          233 TISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (323)
Q Consensus       233 ~i~~~~~~~~~~~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~  312 (323)
                                        ..+.++|.++++++.+++++.+|+.+|.+++++++||+|+   +|   +++||||.+||+++
T Consensus        72 ------------------~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~g---~lvGiit~~Dil~~  127 (213)
T 1vr9_A           72 ------------------SSVFNKVSLPDFFVHEEDNITHALLLFLEHQEPYLPVVDE---EM---RLKGAVSLHDFLEA  127 (213)
T ss_dssp             ------------------SBSGGGCBCTTCCEETTSBHHHHHHHHHHCCCSEEEEECT---TC---BEEEEEEHHHHHHH
T ss_pred             ------------------CcHHHHccCCCEEECCCCcHHHHHHHHHHhCCCEEEEEcC---CC---EEEEEEEHHHHHHH
Confidence                              0122378899999999999999999999999999999985   35   89999999999988

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1

Probab=99.66  E-value=1.3e-16  Score=133.92  Aligned_cols=129  Identities=17%  Similarity=0.164  Sum_probs=101.4

Q ss_pred             ccccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhh
Q 020637          152 LSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELET  231 (323)
Q Consensus       152 l~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~  231 (323)
                      +...++.|+|....+++++.+++++.+|+++|.+++++++||+|+ +|+++|+||..|++..+....    .+.......
T Consensus        11 l~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~-~~~lvGivt~~dl~~~~~~~~----~~~~~~~~~   85 (159)
T 1yav_A           11 LLEATVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDP-SYRLHGLIGTNMIMNSIFGLE----RIEFEKLDQ   85 (159)
T ss_dssp             CTTCBHHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECT-TCBEEEEEEHHHHHHHHBCSS----SBCGGGTTT
T ss_pred             HhHhhHHHHhCCccceEEECCCCcHHHHHHHHHhCCCcEEEEECC-CCCEEEEeEHHHHHHHhhhhc----ccchhhhcc
Confidence            456889999942227999999999999999999999999999995 689999999999976553210    000000000


Q ss_pred             hhHHHHHHHHHHhhcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeecccccc
Q 020637          232 HTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (323)
Q Consensus       232 ~~i~~~~~~~~~~~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~  311 (323)
                      .   .+                .++|.++++++.++++|.+|+.+|.++++  +||+|+   +|   +++||||.+||++
T Consensus        86 ~---~v----------------~~~m~~~~~~v~~~~~l~~a~~~m~~~~~--lpVvd~---~g---~~vGiit~~dil~  138 (159)
T 1yav_A           86 I---TV----------------EEVMLTDIPRLHINDPIMKGFGMVINNGF--VCVEND---EQ---VFEGIFTRRVVLK  138 (159)
T ss_dssp             S---BH----------------HHHSBCSCCEEETTSBHHHHHHHTTTCSE--EEEECT---TC---BEEEEEEHHHHHH
T ss_pred             C---CH----------------HHhcCCCCceEcCCCCHHHHHHHHHhCCE--EEEEeC---CC---eEEEEEEHHHHHH
Confidence            0   01                12588899999999999999999999987  999985   35   8999999999999


Q ss_pred             c
Q 020637          312 C  312 (323)
Q Consensus       312 ~  312 (323)
                      +
T Consensus       139 ~  139 (159)
T 1yav_A          139 E  139 (159)
T ss_dssp             H
T ss_pred             H
Confidence            8

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1

Probab=99.66  E-value=2.8e-16  Score=144.72  Aligned_cols=132  Identities=17%  Similarity=0.270  Sum_probs=105.9

Q ss_pred             hhccccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhh
Q 020637          150 SFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEEL  229 (323)
Q Consensus       150 ~~l~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l  229 (323)
                      ......++.++|  +++++++.+++++.+|+++|.+++++.+||+|+ .|+++|+||..|++..+...+..        +
T Consensus       151 ~~~~~~~v~~~m--~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~-~~~~~Givt~~dl~~~~~~~~~~--------~  219 (296)
T 3ddj_A          151 DLDEIFPVKVFM--STKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDD-DNKVVGIVTVVNAIKQLAKAVDK--------L  219 (296)
T ss_dssp             GSCCCCBHHHHS--BCSCCCEETTSBHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHHHHHHHHHH--------T
T ss_pred             cccccccHHHhh--cCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcC-CCEEEEEEEHHHHHHHHHHHHhh--------c
Confidence            334566899999  578999999999999999999999999999995 68999999999998766522110        0


Q ss_pred             hhhhHHHHHHHHHHhhcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeecccc
Q 020637          230 ETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDI  309 (323)
Q Consensus       230 ~~~~i~~~~~~~~~~~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dI  309 (323)
                      ..   .....           ..+.++|.++++++.++++|.+|+.+|.+++++++||+|+   +|   +++||||.+||
T Consensus       220 ~~---~~~~~-----------~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~---~g---~~~Giit~~Di  279 (296)
T 3ddj_A          220 DP---DYFYG-----------KVVKDVMVTNLVTIDELASVNRAAAEMIVKRIGSLLILNK---DN---TIRGIITERDL  279 (296)
T ss_dssp             CT---HHHHT-----------CBHHHHSBCCCCBCCTTSBHHHHHHHHHHHTCSEEEEECT---TS---CEEEEEEHHHH
T ss_pred             Ch---hhhcC-----------cCHHHHhCCCCeEECCCCcHHHHHHHHHHcCCCEEEEECC---CC---eEEEEEcHHHH
Confidence            00   00000           0112368899999999999999999999999999999984   35   89999999999


Q ss_pred             ccc
Q 020637          310 LKC  312 (323)
Q Consensus       310 l~~  312 (323)
                      +++
T Consensus       280 l~~  282 (296)
T 3ddj_A          280 LIA  282 (296)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            998

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C

Probab=99.65  E-value=3.3e-16  Score=145.96  Aligned_cols=124  Identities=19%  Similarity=0.273  Sum_probs=101.3

Q ss_pred             cccccccc---cCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhh
Q 020637          153 STHTVYEL---LPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEEL  229 (323)
Q Consensus       153 ~~~~~~dv---mp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l  229 (323)
                      ...++.++   |  +.+++++.+++++.+|+++|.+++++++||+|+ .|+++|+||.+|+++.+.....       ..+
T Consensus       185 ~~~~v~~~~~~m--~~~~~~v~~~~~~~~~~~~m~~~~~~~~pVvd~-~~~~~Giit~~dl~~~~~~~~~-------~~~  254 (323)
T 3t4n_C          185 LKIPIGDLNIIT--QDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDE-NGYLINVYEAYDVLGLIKGGIY-------NDL  254 (323)
T ss_dssp             CCSBGGGTTCSB--CTTCCCBCTTSBHHHHHHHHHHHTCSEEEEECT-TCBEEEEEETTHHHHHHHTTHH-------HHT
T ss_pred             hhCcHHHcCCCC--CCCcEEECCCCcHHHHHHHHHHcCCCEEEEECC-CCeEEEEEeHHHHHHHHhhchh-------hhc
Confidence            34688888   7  578999999999999999999999999999995 7899999999999876642100       000


Q ss_pred             hhhhHHHHHHHHHHhhcccccCCCCCCCCC------CcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEE
Q 020637          230 ETHTISAWKVGKLQLNLKRQMDGNGRPCPR------PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYL  303 (323)
Q Consensus       230 ~~~~i~~~~~~~~~~~~~~~~~~~~~im~~------~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGI  303 (323)
                       ..   .+.+                +|.+      ++++|.++++|.+|+.+|.+++++++||+|+   +|   +++||
T Consensus       255 -~~---~v~~----------------~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~---~~---~l~Gi  308 (323)
T 3t4n_C          255 -SL---SVGE----------------ALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDD---VG---RLVGV  308 (323)
T ss_dssp             -TS---BHHH----------------HGGGSCTTCCCCEEECTTCBHHHHHHHHHHSCCCEEEEECT---TS---BEEEE
T ss_pred             -cC---CHHH----------------HHhhccccCCCCEEECCCCCHHHHHHHHHHhCCCEEEEECC---CC---cEEEE
Confidence             00   1122                3444      7899999999999999999999999999985   35   89999


Q ss_pred             eeccccccc
Q 020637          304 ASLSDILKC  312 (323)
Q Consensus       304 IT~~dIl~~  312 (323)
                      ||.+||+++
T Consensus       309 it~~Dil~~  317 (323)
T 3t4n_C          309 LTLSDILKY  317 (323)
T ss_dssp             EEHHHHHHH
T ss_pred             EEHHHHHHH
Confidence            999999987

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1

Probab=99.64  E-value=5.2e-16  Score=141.43  Aligned_cols=145  Identities=19%  Similarity=0.231  Sum_probs=102.3

Q ss_pred             cccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHH------HHHHhhc--CCCCCC
Q 020637          153 STHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFI------LILRELG--TNGSNL  224 (323)
Q Consensus       153 ~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i------~~l~~~~--~~~~~l  224 (323)
                      ...++.++|  +.++++++.++++.+|++.|.+++++.+||+|+ .|+++|+||.+|++      +.+....  ..+ ..
T Consensus       124 ~~~~v~~~m--~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~-~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~-~~  199 (282)
T 2yzq_A          124 KGVEIEPYY--QRYVSIVWEGTPLKAALKALLLSNSMALPVVDS-EGNLVGIVDETDLLRDSEIVRIMKSTELAASS-EE  199 (282)
T ss_dssp             GGCBSTTTS--BSCCCCEETTSBHHHHHHHHHTCSSSEEEEECT-TSCEEEEEEGGGGGGCGGGCC--------------
T ss_pred             ccCcHHHHh--CCCCEEECCCCCHHHHHHHHHHcCCcEEEEEcC-CCeEEEEEEHHHHhhhhhhhhhhccchhhhhh-hh
Confidence            367889999  578899999999999999999999999999985 68999999999997      3221000  000 00


Q ss_pred             ChhhhhhhhHHHHHHHHHHhhcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEe
Q 020637          225 TEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLA  304 (323)
Q Consensus       225 ~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGII  304 (323)
                        ..+..............   ......+.++|+++++++.|+++|.+|+.+|.+++++++||+|+   +|   +++|||
T Consensus       200 --~~~~~~~~~~~~~~~~~---~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~~---~lvGii  268 (282)
T 2yzq_A          200 --EWILESHPTLLFEKFEL---QLPNKPVAEIMTRDVIVATPHMTVHEVALKMAKYSIEQLPVIRG---EG---DLIGLI  268 (282)
T ss_dssp             ------------------------CCCBGGGTCBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEET---TT---EEEEEE
T ss_pred             --hhhcccchHHHHhHhhh---hhccCCHHHhcCCCCceeCCCCCHHHHHHHHHHcCcceeEEECC---CC---CEEEEE
Confidence              00000000000000000   00112245689999999999999999999999999999999995   35   899999


Q ss_pred             eccccccc
Q 020637          305 SLSDILKC  312 (323)
Q Consensus       305 T~~dIl~~  312 (323)
                      |.+||+++
T Consensus       269 t~~Dil~~  276 (282)
T 2yzq_A          269 RDFDLLKV  276 (282)
T ss_dssp             EHHHHGGG
T ss_pred             eHHHHHHH
Confidence            99999998

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1

Probab=99.63  E-value=3.9e-16  Score=143.73  Aligned_cols=131  Identities=9%  Similarity=0.058  Sum_probs=104.0

Q ss_pred             cccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhh
Q 020637          153 STHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETH  232 (323)
Q Consensus       153 ~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~  232 (323)
                      ...++.|+|  +.+++++++++++.+|+++|.+++++++||+|   ++++|++|.+||+..+......      ..    
T Consensus        18 ~~~~V~dim--~~~~~~v~~~~~v~~a~~~m~~~~~~~~~V~d---~~l~GivT~~Di~~~~~~~~~~------~~----   82 (296)
T 3ddj_A           18 QGMNIETLM--IKNPPILSKEDRLGSAFKKINEGGIGRIIVAN---EKIEGLLTTRDLLSTVESYCKD------SC----   82 (296)
T ss_dssp             CCSSGGGTC--EESCCEECTTSBHHHHHHHTTGGGCCEEEEES---SSEEEEEEHHHHHGGGTTCC---------C----
T ss_pred             cccCHHHhc--cCCCcEECCCccHHHHHHHHHHCCCceEEEEC---CeEEEEEeHHHHHHHhcccccc------cc----
Confidence            468899999  56899999999999999999999999999997   7999999999997644311100      00    


Q ss_pred             hHHHHHHHHHHhhcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637          233 TISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (323)
Q Consensus       233 ~i~~~~~~~~~~~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~  312 (323)
                      ....+....        ...++++|+++++++.+++++.+|+.+|.+++++++||+|+   +|   +++||||..|++++
T Consensus        83 ~~~~~~~~~--------~~~v~~im~~~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~---~~---~lvGivt~~dl~~~  148 (296)
T 3ddj_A           83 SQGDLYHIS--------TTPIIDYMTPNPVTVYNTSDEFTAINIMVTRNFGSLPVVDI---ND---KPVGIVTEREFLLL  148 (296)
T ss_dssp             CHHHHHHHH--------TSBGGGTSEESCCCEETTSCHHHHHHHHHHHTCSEEEEECT---TS---CEEEEEEHHHHGGG
T ss_pred             cchhhHHHh--------cccHHHhccCCCEEEcCCCCHHHHHHHHHHcCCCEEEEEcC---CC---cEEEEEeHHHHHHh
Confidence            001111110        11245689999999999999999999999999999999985   35   79999999999986

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*

Probab=99.60  E-value=3.7e-15  Score=135.27  Aligned_cols=120  Identities=19%  Similarity=0.354  Sum_probs=102.3

Q ss_pred             ccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhh
Q 020637          154 THTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHT  233 (323)
Q Consensus       154 ~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~  233 (323)
                      ..++.++|  +.++++++.++++.+|+++|.+++++++||+|+ .|+++|++|..|+++.+.......            
T Consensus        83 ~~~v~~im--~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-~~~~~Givt~~dl~~~~~~~~~~~------------  147 (280)
T 3kh5_A           83 NEPVREIM--EENVITLKENADIDEAIETFLTKNVGGAPIVND-ENQLISLITERDVIRALLDKIDEN------------  147 (280)
T ss_dssp             TSBGGGTS--BCSCCCEETTCBHHHHHHHHHHTTCSEEEEECT-TCBEEEEEEHHHHHHHHGGGSCTT------------
T ss_pred             hhhHHHhc--CCCCEEECCCCCHHHHHHHHHhCCCCEEEEEcC-CCEEEEEEEHHHHHHHHhhcCCCC------------
Confidence            56899999  468999999999999999999999999999995 789999999999977554221100            


Q ss_pred             HHHHHHHHHHhhcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637          234 ISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (323)
Q Consensus       234 i~~~~~~~~~~~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~  312 (323)
                                       ..+.++|.++++++.+++++.+|+.+|.+++++++||+++    |   +++|+||.+||+++
T Consensus       148 -----------------~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~----~---~~~Givt~~dl~~~  202 (280)
T 3kh5_A          148 -----------------EVIDDYITRDVIVATPGERLKDVARTMVRNGFRRLPVVSE----G---RLVGIITSTDFIKL  202 (280)
T ss_dssp             -----------------CBSGGGCBCSCCCBCTTCBHHHHHHHHHHHTCSEEEEEET----T---EEEEEEEHHHHHHH
T ss_pred             -----------------CCHHHHhCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC----C---EEEEEEEHHHHHHH
Confidence                             0123468899999999999999999999999999999953    5   89999999999987

>4aee_A Alpha amylase, catalytic region; hydrolase, hyperthermostable, cyclodextrin hydrolase, GH13; 2.28A {Staphylothermus marinus}

Probab=99.59  E-value=2.1e-15  Score=155.84  Aligned_cols=82  Identities=17%  Similarity=0.145  Sum_probs=71.1

Q ss_pred             cCCeeeEEEEEeeC--CCceEEEEeccCCCCCC-CCCCCCCCCCCeEEEEEEeCCceEEEEEEEcCeee--cCCCCC---
Q 020637           16 VGSILVPVRFIWPN--GGRRVSLSGSFTRWSEP-MPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWR--HDENQP---   87 (323)
Q Consensus        16 ~~~~~~~v~F~w~~--~~~~V~l~Gsf~~W~~~-~~m~~~~~~~g~~~~~~~LppG~y~YkFiVDG~w~--~d~~~p---   87 (323)
                      .....++|+|+++.  +|++|+|+||||+|++. .+|.+.   +|.|++++.||||+|+|||+|||+|.  +||++|   
T Consensus        13 ~~~~~~~v~f~~~~~~~~~~v~~~G~Fn~w~~~~~~~~~~---~~~~~~~~~L~~g~~~y~f~vdg~~~~~~d~~~~~~~   89 (696)
T 4aee_A           13 GRKGRYIVKFTRHWPQYAKNIYLIGEFTSLYPGFVKLRKI---EEQGIVYLKLWPGEYGYGFQIDNDFENVLDPDNEEKK   89 (696)
T ss_dssp             TEEEEEEEEEEEECCTTCSCEEEEETTSCSSTTSCBCEEE---TTEEEEEEEECSEEEEEEEEETTCCSCCCCTTCCCEE
T ss_pred             CCCCcEEEEEEEECCCCCcEEEEEEecCCCCCCCcceEec---CCeEEEEEEcCCceEEEEEEECCEEeecCCCCCCccc
Confidence            45567889998876  68999999999999764 688775   68999999999999999999999999  888877   


Q ss_pred             eeeCCCCccceEE
Q 020637           88 HVSGNYGVVNCVY  100 (323)
Q Consensus        88 ~~~d~~G~~nnvl  100 (323)
                      ++.|++|..|++.
T Consensus        90 y~~~~~g~~n~~~  102 (696)
T 4aee_A           90 CVHTSFFPEYKKC  102 (696)
T ss_dssp             EEECSSCTTSEEE
T ss_pred             ccccCCcccccee
Confidence            4668999999985

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*

Probab=99.58  E-value=1.7e-15  Score=151.68  Aligned_cols=126  Identities=15%  Similarity=0.153  Sum_probs=102.3

Q ss_pred             ccccccccccCCCCCeEEEecc-hhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhh
Q 020637          152 LSTHTVYELLPDSGKVTALDVN-LAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELE  230 (323)
Q Consensus       152 l~~~~~~dvmp~s~~vv~vd~~-~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~  230 (323)
                      +...++.|+|  ++++++++++ +++.+|+++|.+++++++||+|++.++++||||.+|+++.+.......         
T Consensus       381 l~~~~V~diM--~~~~vtv~~~~~tv~ea~~~m~~~~~~~lpVvd~~~g~lvGiVt~~Dll~~l~~~~~~~---------  449 (527)
T 3pc3_A          381 WWSLAIAELE--LPAPPVILKSDATVGEAIALMKKHRVDQLPVVDQDDGSVLGVVGQETLITQIVSMNRQQ---------  449 (527)
T ss_dssp             TTTSBGGGGC--CCCCSCCEETTCBHHHHHHHHHHHTCSEEEEECTTTCCEEEEEEHHHHHHHHHHHCCCT---------
T ss_pred             ccCCcHHHhC--cCCCeEEcCCCCcHHHHHHHHHHcCCCeEEEEECCCCEEEEEEEHHHHHHHHHhccCcC---------
Confidence            4578999999  5789999999 999999999999999999999933689999999999987654321100         


Q ss_pred             hhhHHHHHHHHHHhhcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCC-CCCCcccEEEEeecccc
Q 020637          231 THTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTG-PAGSCQEILYLASLSDI  309 (323)
Q Consensus       231 ~~~i~~~~~~~~~~~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~-~~g~~~~lvGIIT~~dI  309 (323)
                                         ...+.++|+++++++.++++|.+|+.+|.++++  +||+|++. ..|   +++||||..||
T Consensus       450 -------------------~~~V~~im~~~~~~v~~~~~l~~a~~~m~~~~~--~pVVd~~~~~~g---~lvGIVT~~Dl  505 (527)
T 3pc3_A          450 -------------------SDPAIKALNKRVIRLNESEILGKLARVLEVDPS--VLILGKNPAGKV---ELKALATKLDV  505 (527)
T ss_dssp             -------------------TSBGGGGEETTCCEEETTSBHHHHHHHHTTCSE--EEEEEECSSSCE---EEEEEEEHHHH
T ss_pred             -------------------CCcHHHHhcCCCeEECCCCcHHHHHHHHhhCCE--EEEEeCCcccCC---eEEEEEEHHHH
Confidence                               001234799999999999999999999977665  79998510 024   89999999999


Q ss_pred             ccc
Q 020637          310 LKC  312 (323)
Q Consensus       310 l~~  312 (323)
                      +++
T Consensus       506 l~~  508 (527)
T 3pc3_A          506 TTF  508 (527)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            999

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}

Probab=99.58  E-value=1.3e-15  Score=155.69  Aligned_cols=152  Identities=11%  Similarity=0.123  Sum_probs=104.3

Q ss_pred             cccccccccCCCCCeEEEecchhHHHHHHHHH-HCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCC-CCCCChhh--
Q 020637          153 STHTVYELLPDSGKVTALDVNLAVKQAFHVLY-EQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTN-GSNLTEEE--  228 (323)
Q Consensus       153 ~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~-~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~-~~~l~~~~--  228 (323)
                      ...++.|+|...++++++++++++.+|.++|. +++++++||+|+ +++++|+||.+|+++.+...... .......+  
T Consensus       451 ~~~~V~diM~p~~~v~~v~~~~t~~e~~~~~~~~~~~~~~PVvd~-~~~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~~  529 (632)
T 3org_A          451 PEMTAREIMHPIEGEPHLFPDSEPQHIKGILEKFPNRLVFPVIDA-NGYLLGAISRKEIVDRLQHVLEDVPEPIAGHRTL  529 (632)
T ss_dssp             TTSBHHHHCBCTTTSCCBCSSSCHHHHHHHHHHSTTCCEECBBCT-TCBBCCEESHHHHTTTTTTC--------------
T ss_pred             ccCcHHHHhhcCCCceEecCCCcHHHHHHHHHhcCCcceEEEEec-CCeEEEEEEHHHHHHHHHHHhhhcccccccccce
Confidence            67889999943378999999999999999999 899999999995 78999999999997654321100 00000000  


Q ss_pred             --hhhhhHH-HHHHHHHHh--------hc-----ccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCC
Q 020637          229 --LETHTIS-AWKVGKLQL--------NL-----KRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTG  292 (323)
Q Consensus       229 --l~~~~i~-~~~~~~~~~--------~~-----~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~  292 (323)
                        ++...+. .++......        .+     .+..+.+.++|++++++|++++++.||+++|.++++|++||+|+  
T Consensus       530 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~v~~iMt~~pitV~~~~~l~ea~~~M~~~~i~~lpVve~--  607 (632)
T 3org_A          530 VLLDAADLSENIEGLVDETPSGEHSSKGKRTATVLEPTSSLVVPCDVSPIVVTSYSLVRQLHFLFVMLMPSMIYVTER--  607 (632)
T ss_dssp             -----------------------------------------CCSCCCCCCEEETTCBHHHHHHHHHHTCCSEEEEEET--
T ss_pred             eccCHHHHHhhcccCCCCCcccchhhhcccceEeeccccccchhhcCCCceecCCCcHHHHHHHHHhcCCCEEEEEEC--
Confidence              0000000 000000000        00     00111245689999999999999999999999999999999953  


Q ss_pred             CCCCcccEEEEeeccccccc
Q 020637          293 PAGSCQEILYLASLSDILKC  312 (323)
Q Consensus       293 ~~g~~~~lvGIIT~~dIl~~  312 (323)
                        |   +++||||++||+++
T Consensus       608 --G---~lvGIVT~~Dll~~  622 (632)
T 3org_A          608 --G---KLVGIVEREDVAYG  622 (632)
T ss_dssp             --T---EEEEEEEGGGTEEC
T ss_pred             --C---EEEEEEehhhHHHH
Confidence              5   89999999999998

>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A

Probab=99.58  E-value=6.9e-15  Score=135.39  Aligned_cols=117  Identities=19%  Similarity=0.298  Sum_probs=100.8

Q ss_pred             cccccccccCCCCCeEEEecchhHHHHHHHHHHC-----CCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChh
Q 020637          153 STHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQ-----GLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEE  227 (323)
Q Consensus       153 ~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~-----~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~  227 (323)
                      ...++.++|  +++++++.++.++.+|++.|.++     ++..+||+|+ .++++|+||..|++..     . ..     
T Consensus       133 ~~~~v~~iM--~~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~~Vvd~-~~~lvGivt~~dll~~-----~-~~-----  198 (278)
T 2yvy_A          133 EEDEAGGLM--TPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDE-KGRLKGVLSLRDLIVA-----D-PR-----  198 (278)
T ss_dssp             CTTBGGGTC--BSCCCEECTTSBHHHHHHHHHHHTTTCSCSSEEEEECT-TCBEEEEEEHHHHHHS-----C-TT-----
T ss_pred             CcchHHhhc--CCCceEECCCCcHHHHHHHHHHccCCccceeEEEEECC-CCCEEEEEEHHHHhcC-----C-CC-----
Confidence            467899999  46899999999999999999997     7999999995 6899999999998631     0 00     


Q ss_pred             hhhhhhHHHHHHHHHHhhcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeecc
Q 020637          228 ELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLS  307 (323)
Q Consensus       228 ~l~~~~i~~~~~~~~~~~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~  307 (323)
                                             ..+.++|.+++++|.+++++.+|+.+|.+++++++||+|+   .|   +++||||..
T Consensus       199 -----------------------~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~g---~lvGivT~~  249 (278)
T 2yvy_A          199 -----------------------TRVAEIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDE---EG---RLVGIVTVD  249 (278)
T ss_dssp             -----------------------CBSTTTSBSSCCCEETTSBHHHHHHHHHHHTCSEEEEECT---TS---BEEEEEEHH
T ss_pred             -----------------------CcHHHHhCCCCeEEeCCCCHHHHHHHHHhcCCCEEEEEeC---CC---eEEEEEEHH
Confidence                                   0123479889999999999999999999999999999985   35   899999999


Q ss_pred             ccccc
Q 020637          308 DILKC  312 (323)
Q Consensus       308 dIl~~  312 (323)
                      ||+++
T Consensus       250 Dil~~  254 (278)
T 2yvy_A          250 DVLDV  254 (278)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99987

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*

Probab=99.57  E-value=5.6e-15  Score=138.25  Aligned_cols=123  Identities=15%  Similarity=0.239  Sum_probs=99.5

Q ss_pred             ccccccc---cCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhh
Q 020637          154 THTVYEL---LPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELE  230 (323)
Q Consensus       154 ~~~~~dv---mp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~  230 (323)
                      ..++.++   |  ..+++++.+++++.+|+++|.+++++.+||+|+ +|+++|+||.+|+++.+....     .  ....
T Consensus       181 ~~~v~~l~~~m--~~~~~~v~~~~~~~~~~~~m~~~~~~~~~Vvd~-~~~~~Giit~~dl~~~~~~~~-----~--~~~~  250 (334)
T 2qrd_G          181 RVPLNQMTIGT--WSNLATASMETKVYDVIKMLAEKNISAVPIVNS-EGTLLNVYESVDVMHLIQDGD-----Y--SNLD  250 (334)
T ss_dssp             CCBGGGSSCSB--CSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECT-TCBEEEEEETHHHHHHHTTSC-----G--GGGG
T ss_pred             hCcHHHhCCcc--cCCceEECCCCcHHHHHHHHHHcCCcEEEEEcC-CCcEEEEEEHHHHHHHhhccc-----c--cccc
Confidence            4667774   6  578899999999999999999999999999995 689999999999987653210     0  0000


Q ss_pred             hhhHHHHHHHHHHhhcccccCCCCCCCC------CCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEe
Q 020637          231 THTISAWKVGKLQLNLKRQMDGNGRPCP------RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLA  304 (323)
Q Consensus       231 ~~~i~~~~~~~~~~~~~~~~~~~~~im~------~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGII  304 (323)
                       .   .+.+                +|.      ++++++.++++|.+|+.+|.+++++++||+|+   .|   +++|||
T Consensus       251 -~---~v~~----------------~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~---~g---~l~Gii  304 (334)
T 2qrd_G          251 -L---SVGE----------------ALLKRPANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDE---NL---KLEGIL  304 (334)
T ss_dssp             -S---BHHH----------------HHTTCCTTCCCCCEECTTCBHHHHHHHHHHSCCCEEEEECT---TC---BEEEEE
T ss_pred             -C---cHHH----------------HHhcccccCCCCEEECCCCcHHHHHHHHHHcCCCEEEEECC---CC---eEEEEE
Confidence             0   1122                344      47899999999999999999999999999985   35   899999


Q ss_pred             eccccccc
Q 020637          305 SLSDILKC  312 (323)
Q Consensus       305 T~~dIl~~  312 (323)
                      |.+||+++
T Consensus       305 t~~dil~~  312 (334)
T 2qrd_G          305 SLADILNY  312 (334)
T ss_dssp             EHHHHHHH
T ss_pred             eHHHHHHH
Confidence            99999998

>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1

Probab=99.57  E-value=1.9e-15  Score=139.97  Aligned_cols=124  Identities=21%  Similarity=0.296  Sum_probs=102.8

Q ss_pred             Hhhhhhc--cccccccccCCCCCeEEEecchhHHHHHHHHHHC-----CCCeeeeEeCCCCeEEEEEehHHHHHHHHhhc
Q 020637          146 DRISSFL--STHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQ-----GLPMVPLWDDFKGRFVGVLSALDFILILRELG  218 (323)
Q Consensus       146 ~~~~~~l--~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~-----~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~  218 (323)
                      ..+++.+  ...++.++|  ++.++++.++.++.+|++.|.++     ++..+||+|+ .++++|+||..|++..     
T Consensus       126 ~~i~~ll~~~~~~v~~iM--~~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~pVvd~-~~~lvGivt~~dll~~-----  197 (286)
T 2oux_A          126 GEIKELLHYEDETAGAIM--TTEFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQ-ENHLVGVISLRDLIVN-----  197 (286)
T ss_dssp             HHHHHHTTSCTTBHHHHC--BSCCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECT-TCBEEEEEEHHHHTTS-----
T ss_pred             HHHHHHhcCChHHHHHhC--CCCceEECCCCcHHHHHHHHHHcccCccceeEEEEEcC-CCeEEEEEEHHHHHcC-----
Confidence            3344443  467899999  56899999999999999999998     8888999995 6899999999998531     


Q ss_pred             CCCCCCChhhhhhhhHHHHHHHHHHhhcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcc
Q 020637          219 TNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQ  298 (323)
Q Consensus       219 ~~~~~l~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~  298 (323)
                       .. ..           .+.                ++|.+++++|.+++++.+|+.+|.+++++++||+|+   .|   
T Consensus       198 -~~-~~-----------~v~----------------~im~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~---~g---  242 (286)
T 2oux_A          198 -DD-DT-----------LIA----------------DILNERVISVHVGDDQEDVAQTIRDYDFLAVPVTDY---DD---  242 (286)
T ss_dssp             -CT-TS-----------BHH----------------HHSBSCCCCEETTSBHHHHHHHHHHHTCSEEEEECT---TC---
T ss_pred             -CC-CC-----------cHH----------------HHcCCCCeeecCCCCHHHHHHHHHHcCCcEEEEEcC---CC---
Confidence             00 00           011                258888999999999999999999999999999985   35   


Q ss_pred             cEEEEeeccccccc
Q 020637          299 EILYLASLSDILKC  312 (323)
Q Consensus       299 ~lvGIIT~~dIl~~  312 (323)
                      +++||||..||+++
T Consensus       243 ~lvGiIT~~Dil~~  256 (286)
T 2oux_A          243 HLLGIVTVDDIIDV  256 (286)
T ss_dssp             BEEEEEEHHHHHHH
T ss_pred             eEEEEEEHHHHHHH
Confidence            89999999999987

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*

Probab=99.51  E-value=5e-14  Score=131.65  Aligned_cols=127  Identities=13%  Similarity=0.167  Sum_probs=99.5

Q ss_pred             ccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHHH
Q 020637          158 YELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAW  237 (323)
Q Consensus       158 ~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~~  237 (323)
                      .++|  .++++++.+++++.+|+++|.+++++.+||+|++.|+++|+||..|+++.+...... ...  .++....   +
T Consensus       121 ~~im--~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~dl~~~~~~~~~~-~~~--~~~~~~~---v  192 (330)
T 2v8q_E          121 LQDS--FKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLKLFITE-FPK--PEFMSKS---L  192 (330)
T ss_dssp             SSSS--CCCCCCBCTTSBHHHHHHHHHHHTCSCEEEECTTTCCEEEEECHHHHHHHHHHHSCS-SSC--CGGGGSB---H
T ss_pred             hhcc--cCCceEeCCCCCHHHHHHHHHHCCCCeEEEEeCCCCcEEEEEcHHHHHHHHHHHhhc-cCc--hhhhcCC---H
Confidence            4667  578999999999999999999999999999985368999999999998876543211 011  1111111   1


Q ss_pred             HHHHHHhhcccccCCCCCCCC-CCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637          238 KVGKLQLNLKRQMDGNGRPCP-RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (323)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~im~-~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~  312 (323)
                      .+    +.          +|. ++++++.+++++.+|+.+|.+++++++||+|+   +|   +++|+||.+||+++
T Consensus       193 ~~----~~----------v~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~---~~---~l~Giit~~dl~~~  248 (330)
T 2v8q_E          193 EE----LQ----------IGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDE---KG---RVVDIYSKFDVINL  248 (330)
T ss_dssp             HH----HT----------CSBCSSCCCEETTCBHHHHHHHHHHHCCSEEEEECT---TS---BEEEEEEGGGTGGG
T ss_pred             HH----hc----------ccCcCCceEECCCCCHHHHHHHHHHcCCCeEEEECC---CC---cEEEEEEHHHHHHH
Confidence            11    11          355 78899999999999999999999999999985   35   89999999999988

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1

Probab=99.51  E-value=5e-14  Score=128.19  Aligned_cols=120  Identities=20%  Similarity=0.234  Sum_probs=95.3

Q ss_pred             ccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHH-HHHhhcCCCCCCChhhhhhh
Q 020637          154 THTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL-ILRELGTNGSNLTEEELETH  232 (323)
Q Consensus       154 ~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~-~l~~~~~~~~~l~~~~l~~~  232 (323)
                      ..++.++|  ...++++++++++.+|+++|.++++..+||+|+ .|+++|++|..|+++ .+..   . . .    ..  
T Consensus        59 ~~~v~~~m--~~~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~-~~~~~Giit~~di~~~~~~~---~-~-~----~~--  124 (282)
T 2yzq_A           59 EEQLAMLV--KRDVPVVKENDTLKKAAKLMLEYDYRRVVVVDS-KGKPVGILTVGDIIRRYFAK---S-E-K----YK--  124 (282)
T ss_dssp             -----CCC--BSCCCEEETTSBHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHHHTTTT---C-S-G----GG--
T ss_pred             cCCHHHHc--CCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcC-CCEEEEEEEHHHHHHHHHhc---c-C-C----cc--
Confidence            35677888  356899999999999999999999999999995 689999999999965 3321   0 0 0    00  


Q ss_pred             hHHHHHHHHHHhhcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccc
Q 020637          233 TISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDIL  310 (323)
Q Consensus       233 ~i~~~~~~~~~~~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl  310 (323)
                                       ...++++|.++++++.+++++.+|+.+|.+++++++||+|+   .|   +++|+||.+||+
T Consensus       125 -----------------~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~---~~---~~~Giit~~dl~  179 (282)
T 2yzq_A          125 -----------------GVEIEPYYQRYVSIVWEGTPLKAALKALLLSNSMALPVVDS---EG---NLVGIVDETDLL  179 (282)
T ss_dssp             -----------------GCBSTTTSBSCCCCEETTSBHHHHHHHHHTCSSSEEEEECT---TS---CEEEEEEGGGGG
T ss_pred             -----------------cCcHHHHhCCCCEEECCCCCHHHHHHHHHHcCCcEEEEEcC---CC---eEEEEEEHHHHh
Confidence                             00123478899999999999999999999999999999985   35   799999999999

>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A

Probab=99.47  E-value=1.2e-13  Score=136.62  Aligned_cols=117  Identities=19%  Similarity=0.296  Sum_probs=100.2

Q ss_pred             cccccccccCCCCCeEEEecchhHHHHHHHHHHC-----CCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChh
Q 020637          153 STHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQ-----GLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEE  227 (323)
Q Consensus       153 ~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~-----~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~  227 (323)
                      ...++.++|  +++++++.++.++.+|++.|.++     ++..+||+|+ +++++|+||.+|++..     . . ..   
T Consensus       153 ~~~~v~~iM--~~~~v~v~~~~tv~ea~~~~~~~~~~~~~~~~ipVvd~-~~~lvGiVt~~Dll~~-----~-~-~~---  219 (473)
T 2zy9_A          153 EEDEAGGLM--TPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDE-KGRLKGVLSLRDLIVA-----D-P-RT---  219 (473)
T ss_dssp             CTTBSTTTC--BSCEEEECTTCBHHHHHHHHHHHGGGCSEEEEEEEECT-TSBEEEEEEHHHHHHS-----C-T-TS---
T ss_pred             CCCCHHHhC--CCCceEeCCCCcHHHHHHHHHhccCCcCceeEEEEECC-CCcEEEEEEHHHHhcC-----C-C-CC---
Confidence            467899999  46899999999999999999996     5899999995 6899999999998531     0 0 00   


Q ss_pred             hhhhhhHHHHHHHHHHhhcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeecc
Q 020637          228 ELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLS  307 (323)
Q Consensus       228 ~l~~~~i~~~~~~~~~~~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~  307 (323)
                                              .+.++|.++++++.+++++.+|+++|.+++++++||+|+   .|   +++||||..
T Consensus       220 ------------------------~v~dim~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVDe---~g---~lvGiIT~~  269 (473)
T 2zy9_A          220 ------------------------RVAEIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDE---EG---RLVGIVTVD  269 (473)
T ss_dssp             ------------------------BGGGTSBSSCCCEESSSBHHHHHHHHHHHTCSEEEEECT---TS---BEEEEEEHH
T ss_pred             ------------------------cHHHHhCCCCeEEeCCCcHHHHHHHHHhcCCcEEEEEcC---CC---EEEEEEehH
Confidence                                    012379889999999999999999999999999999985   35   899999999


Q ss_pred             ccccc
Q 020637          308 DILKC  312 (323)
Q Consensus       308 dIl~~  312 (323)
                      ||++.
T Consensus       270 Dil~~  274 (473)
T 2zy9_A          270 DVLDV  274 (473)
T ss_dssp             HHHHH
T ss_pred             hhHHH
Confidence            99987

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=99.42  E-value=9.2e-13  Score=131.44  Aligned_cols=124  Identities=16%  Similarity=0.230  Sum_probs=99.1

Q ss_pred             HHhhhhhccccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCC-CCeEEEEEehHHHHHHHHhhcCCCCC
Q 020637          145 RDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDF-KGRFVGVLSALDFILILRELGTNGSN  223 (323)
Q Consensus       145 ~~~~~~~l~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~-~~~~vGilT~~D~i~~l~~~~~~~~~  223 (323)
                      ...+++.++   ..+.|  ..+++++++++++.+|+++|.+++++.+||+|+. .++++|+||.+|+..     ... ..
T Consensus       106 ~~~V~~V~~---~~~~m--~~d~v~l~~~~tv~ea~~~m~~~~~s~~pVvd~g~~~~lvGiVt~rDl~~-----~~~-~~  174 (511)
T 3usb_A          106 AEQVDKVKR---SESGV--ISDPFFLTPEHQVYDAEHLMGKYRISGVPVVNNLDERKLVGIITNRDMRF-----IQD-YS  174 (511)
T ss_dssp             HHHHHHHHT---SSSCS--SSSCCCBCTTSBHHHHHHHHHHHCCSEEEEESCTTTCBEEEEEEHHHHTT-----CCC-SS
T ss_pred             HHHHHHhhc---ccccc--ccCCEEECCCCCHHHHHHHHHHcCCcEEEEEecCCCCEEEEEEEehHhhh-----hcc-CC
Confidence            334555543   33556  4678999999999999999999999999999841 589999999999832     110 00


Q ss_pred             CChhhhhhhhHHHHHHHHHHhhcccccCCCCCCCCC-CcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEE
Q 020637          224 LTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPR-PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILY  302 (323)
Q Consensus       224 l~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~im~~-~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvG  302 (323)
                      .           .+.+                +|++ +++++.+++++.+|+.+|.+++++++||+|+   .|   +++|
T Consensus       175 ~-----------~V~~----------------vM~~~~~vtv~~~~~l~eal~~m~~~~i~~lpVVDe---~g---~l~G  221 (511)
T 3usb_A          175 I-----------KISD----------------VMTKEQLITAPVGTTLSEAEKILQKYKIEKLPLVDN---NG---VLQG  221 (511)
T ss_dssp             S-----------BHHH----------------HCCCCCCCCEETTCCHHHHHHHHHHHTCSEEEEECT---TS---BEEE
T ss_pred             C-----------cHHH----------------hcccCCCEEECCCCCHHHHHHHHHHcCCCEEEEEeC---CC---CEee
Confidence            0           1222                5887 9999999999999999999999999999995   35   8999


Q ss_pred             Eeeccccccc
Q 020637          303 LASLSDILKC  312 (323)
Q Consensus       303 IIT~~dIl~~  312 (323)
                      +||..||++.
T Consensus       222 iIT~~Dil~~  231 (511)
T 3usb_A          222 LITIKDIEKV  231 (511)
T ss_dssp             EEEHHHHHHH
T ss_pred             eccHHHHHHh
Confidence            9999999998

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=99.39  E-value=1.1e-12  Score=130.00  Aligned_cols=114  Identities=18%  Similarity=0.235  Sum_probs=96.6

Q ss_pred             ccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeC-CCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHH
Q 020637          158 YELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDD-FKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISA  236 (323)
Q Consensus       158 ~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~-~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~  236 (323)
                      .++|  ..++++++++.++.+|+++|.++++..+||+|. +.++++|+||.+|++..     ... .             
T Consensus        93 ~~im--~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~lvGivt~~Dl~~~-----~~~-~-------------  151 (491)
T 1zfj_A           93 ENGV--IIDPFFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMRFI-----SDY-N-------------  151 (491)
T ss_dssp             TTTT--SSSCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTTCBEEEEEEHHHHHHC-----SCS-S-------------
T ss_pred             HhcC--cCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEeCCCCEEEEEEEHHHHhhh-----ccC-C-------------
Confidence            6788  468999999999999999999999999999982 36899999999998531     100 0             


Q ss_pred             HHHHHHHhhcccccCCCCCCCCC-CcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637          237 WKVGKLQLNLKRQMDGNGRPCPR-PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (323)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~im~~-~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~  312 (323)
                                    ..+.++|++ +++++.+++++.+++.+|.+++++++||+|+   .|   +++|+||..||++.
T Consensus       152 --------------~~v~~im~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~---~g---~lvGivt~~Dil~~  208 (491)
T 1zfj_A          152 --------------APISEHMTSEHLVTAAVGTDLETAERILHEHRIEKLPLVDN---SG---RLSGLITIKDIEKV  208 (491)
T ss_dssp             --------------SBTTTSCCCSCCCCEETTCCHHHHHHHHHHTTCSEEEEECT---TS---BEEEEEEHHHHHHH
T ss_pred             --------------CcHHHHcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcC---CC---cEEEEEEHHHHHHH
Confidence                          012347888 8999999999999999999999999999985   35   89999999999988

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=99.37  E-value=4.7e-14  Score=140.60  Aligned_cols=119  Identities=16%  Similarity=0.169  Sum_probs=4.0

Q ss_pred             ccccccc-cCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCC--CCeEEEEEehHHHHHHHHhhcCCCCCCChhhhh
Q 020637          154 THTVYEL-LPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDF--KGRFVGVLSALDFILILRELGTNGSNLTEEELE  230 (323)
Q Consensus       154 ~~~~~dv-mp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~--~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~  230 (323)
                      ....+++ |  ..+++++++++++.+|+++|.+++++.+||+|++  .++++||||.+|++..    ..        .  
T Consensus        95 ~V~~~e~gM--~~~~~~v~~~~tv~eal~~m~~~~~s~~pVvd~~~~~g~lvGiVt~~Dl~~~----~~--------~--  158 (503)
T 1me8_A           95 AVKNFKAGF--VVSDSNVKPDQTFADVLAISQRTTHNTVAVTDDGTPHGVLLGLVTQRDYPID----LT--------Q--  158 (503)
T ss_dssp             HHHTTTC-------------------------------------------------------------------------
T ss_pred             hhhhcccCc--ccCCeEECCCCcHHHHHHHHHHcCceEEEEEECCCcCCeEEEEEEHHHHHhh----hc--------c--
Confidence            3455677 7  4689999999999999999999999999999952  1799999999998532    00        0  


Q ss_pred             hhhHHHHHHHHHHhhcccccCCCCCCCCCC--cEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccc
Q 020637          231 THTISAWKVGKLQLNLKRQMDGNGRPCPRP--LVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSD  308 (323)
Q Consensus       231 ~~~i~~~~~~~~~~~~~~~~~~~~~im~~~--~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~d  308 (323)
                             .+.           .+.++|+++  ++++.+++++.+|+.+|.+++++++||+|+   .|   +++||||.+|
T Consensus       159 -------~~~-----------~V~diM~~~~~~~tv~~~~sl~ea~~~m~~~~i~~lpVVDe---~g---~lvGiIT~~D  214 (503)
T 1me8_A          159 -------TET-----------KVSDMMTPFSKLVTAHQDTKLSEANKIIWEKKLNALPIIDD---DQ---HLRYIVFRKD  214 (503)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             -------ccC-----------cHHHHhCCCCCCEEEcCCCcHHHHHHHHHHcCCCEEEEEcC---CC---eEEEEEEecH
Confidence                   000           022368877  999999999999999999999999999995   35   7999999999


Q ss_pred             cccc
Q 020637          309 ILKC  312 (323)
Q Consensus       309 Il~~  312 (323)
                      |+++
T Consensus       215 il~~  218 (503)
T 1me8_A          215 YDRS  218 (503)
T ss_dssp             ----
T ss_pred             HHHh
Confidence            9998

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*

Probab=99.35  E-value=7.8e-14  Score=137.50  Aligned_cols=134  Identities=16%  Similarity=0.222  Sum_probs=10.0

Q ss_pred             CCHHHHHHHHHhhhhhccccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCC--CCeEEEEEehHHHHHH
Q 020637          136 YSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDF--KGRFVGVLSALDFILI  213 (323)
Q Consensus       136 ~s~~~l~~~~~~~~~~l~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~--~~~~vGilT~~D~i~~  213 (323)
                      .+-+++.++-+.+.++=.      .|  -.+++++.++.+|.+|+++|.+++++++||+|+.  .++|+||||.+|+-  
T Consensus       125 ~sie~Qa~~V~~VKr~e~------g~--i~dPvtl~P~~Tv~da~~l~~~~~isgvpVvd~g~~~~kLvGIvT~RD~r--  194 (556)
T 4af0_A          125 CSAEEQAAMVRRVKKYEN------GF--ITDPLCLGPDATVGDVLEIKAKFGFCGVPITETGEPDSKLLGIVTGRDVQ--  194 (556)
T ss_dssp             SCHHHHHHHHHHHHHCCC--------------------------------------------------------------
T ss_pred             CCHHHHHHHHHHHHhccc------Cc--cCCCeEcCCCCCHHHHHHHHHHhCCCccccccccCcCCEEEEEEeccccc--
Confidence            344555555555555422      23  2568999999999999999999999999999853  57999999999972  


Q ss_pred             HHhhcCCCCCCChhhhhhhhHHHHHHHHHHhhcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCC
Q 020637          214 LRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGP  293 (323)
Q Consensus       214 l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~  293 (323)
                        ..          +..        .            .+.++|+++++++..+.++.+|..+|.++++..|||||+   
T Consensus       195 --f~----------d~~--------~------------~V~evMT~~lvt~~~~~~leeA~~iL~~~kieklpVVd~---  239 (556)
T 4af0_A          195 --FQ----------DAE--------T------------PIKSVMTTEVVTGSSPITLEKANSLLRETKKGKLPIVDS---  239 (556)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --cc----------ccc--------e------------EhhhhcccceEEecCCCCHHHHHHHHHHccccceeEEcc---
Confidence              10          000        0            022379999999999999999999999999999999996   


Q ss_pred             CCCcccEEEEeeccccccccccCc
Q 020637          294 AGSCQEILYLASLSDILKCKHFLH  317 (323)
Q Consensus       294 ~g~~~~lvGIIT~~dIl~~~~f~~  317 (323)
                      .|   +|+|+||.+||++...|+.
T Consensus       240 ~g---~LvGlIT~kDi~k~~~~p~  260 (556)
T 4af0_A          240 NG---HLVSLVARSDLLKNQNYPY  260 (556)
T ss_dssp             ---------------------CTT
T ss_pred             CC---cEEEEEEechhhhhhhCCc
Confidence            35   8999999999999844443

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=99.35  E-value=1.5e-13  Score=136.52  Aligned_cols=115  Identities=21%  Similarity=0.317  Sum_probs=4.7

Q ss_pred             ccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHH
Q 020637          156 TVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTIS  235 (323)
Q Consensus       156 ~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~  235 (323)
                      ++.|+|  ..+++++.+++++.+|+++|.++++..+||+|+ +++++|+||.+|++..     ..   .           
T Consensus        96 ~~~~iM--~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~-~~~lvGivt~~Dl~~~-----~~---~-----------  153 (494)
T 1vrd_A           96 KTENGI--IYDPITVTPDMTVKEAIDLMAEYKIGGLPVVDE-EGRLVGLLTNRDVRFE-----KN---L-----------  153 (494)
T ss_dssp             TC------------------------------------------------------------------------------
T ss_pred             hHhhcC--ccCCeEECCCCCHHHHHHHHHHcCceEEEEEcC-CCEEEEEEEHHHHHhh-----cC---C-----------
Confidence            456788  568999999999999999999999999999995 6899999999998531     00   0           


Q ss_pred             HHHHHHHHhhcccccCCCCCCCCC--CcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637          236 AWKVGKLQLNLKRQMDGNGRPCPR--PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (323)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~im~~--~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~  312 (323)
                         +.           .+.++|++  +++++.+++++.+|+.+|.++++++|||+|+   +|   +++||||..||+++
T Consensus       154 ---~~-----------~v~~im~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~---~g---~lvGiIt~~Dll~~  212 (494)
T 1vrd_A          154 ---SK-----------KIKDLMTPREKLIVAPPDISLEKAKEILHQHRIEKLPLVSK---DN---KLVGLITIKDIMSV  212 (494)
T ss_dssp             ---------------------------------------------------------------------------CHHH
T ss_pred             ---CC-----------cHHHHhCCCCCCeEECCCCCHHHHHHHHHHcCCcEEEEEcC---CC---eEEEEEEHHHHHhh
Confidence               00           01236887  8999999999999999999999999999995   35   89999999999998

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=99.34  E-value=6.5e-13  Score=132.05  Aligned_cols=115  Identities=11%  Similarity=0.145  Sum_probs=82.7

Q ss_pred             ccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHH
Q 020637          156 TVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTIS  235 (323)
Q Consensus       156 ~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~  235 (323)
                      +..++|  ..+++++++++++.+|.++|.+++++.+||+|+ .++++||||.+|+.     .... ...           
T Consensus        90 ~~~~~m--~~d~v~v~~~~tv~ea~~~m~~~~~s~~PVvd~-~~~lvGiVt~rDL~-----~~~~-~~~-----------  149 (496)
T 4fxs_A           90 IFEAGV--VTHPVTVRPEQTIADVMELTHYHGFAGFPVVTE-NNELVGIITGRDVR-----FVTD-LTK-----------  149 (496)
T ss_dssp             HCCC----CBCCCCBCSSSBHHHHHHHHTSSCCCEEEEECS-SSBEEEEEEHHHHT-----TCCC-TTS-----------
T ss_pred             cccccc--ccCceEECCCCCHHHHHHHHHHcCCcEEEEEcc-CCEEEEEEEHHHHh-----hccc-CCC-----------
Confidence            446778  478899999999999999999999999999995 68999999999983     1110 000           


Q ss_pred             HHHHHHHHhhcccccCCCCCCCC-C-CcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637          236 AWKVGKLQLNLKRQMDGNGRPCP-R-PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (323)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~im~-~-~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~  312 (323)
                                      .+.++|+ + +++++.+++++.+|+.+|.+++++++||+|+   .|   +|+|+||..||+++
T Consensus       150 ----------------~v~diM~p~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe---~G---~l~GiIT~~DIl~~  206 (496)
T 4fxs_A          150 ----------------SVAAVMTPKERLATVKEGATGAEVQEKMHKARVEKILVVND---EF---QLKGMITAKDFHKA  206 (496)
T ss_dssp             ----------------BGGGTSEEGGGCCEEECC----CGGGTCC---CCCEEEECT---TS---BCCEEECCC-----
T ss_pred             ----------------cHHHHhcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcC---CC---CEEEeehHhHHHHh
Confidence                            0123687 4 5899999999999999999999999999995   35   89999999999998

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=99.34  E-value=2.2e-13  Score=135.29  Aligned_cols=115  Identities=17%  Similarity=0.236  Sum_probs=3.0

Q ss_pred             cccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhH
Q 020637          155 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTI  234 (323)
Q Consensus       155 ~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i  234 (323)
                      .++.++|  ..+++++++++++.+|+++|.+++++.+||+|  .++++||||.+|+...     ..   .          
T Consensus        88 k~~~~~m--~~~~v~v~~~~tv~ea~~~m~~~~~s~~pVvd--~g~lvGIVt~rDl~~~-----~~---~----------  145 (490)
T 4avf_A           88 KKHETAI--VRDPVTVTPSTKIIELLQMAREYGFSGFPVVE--QGELVGIVTGRDLRVK-----PN---A----------  145 (490)
T ss_dssp             HHCCC---------------------------------------------------------------------------
T ss_pred             cccccCc--ccCceEeCCCCcHHHHHHHHHHhCCCEEEEEE--CCEEEEEEEhHHhhhc-----cc---c----------
Confidence            3467788  46789999999999999999999999999998  5799999999998310     00   0          


Q ss_pred             HHHHHHHHHhhcccccCCCCCCCC-C-CcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637          235 SAWKVGKLQLNLKRQMDGNGRPCP-R-PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (323)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~im~-~-~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~  312 (323)
                          +.           .+.++|+ + +++++.+++++.+|+.+|.+++++++||+|+   .|   +|+|+||..||+++
T Consensus       146 ----~~-----------~V~~vMtp~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe---~g---~lvGiIT~~Dil~~  204 (490)
T 4avf_A          146 ----GD-----------TVAAIMTPKDKLVTAREGTPLEEMKAKLYENRIEKMLVVDE---NF---YLRGLVTFRDIEKA  204 (490)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ----CC-----------cHHHHhccCCCCEEECCCCcHHHHHHHHHHcCCCEEEEEcC---CC---cEEEEEehHHhhhh
Confidence                00           0123687 4 6999999999999999999999999999995   35   89999999999998

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=99.30  E-value=1.9e-13  Score=136.58  Aligned_cols=119  Identities=16%  Similarity=0.222  Sum_probs=69.2

Q ss_pred             cccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCC--CCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhh
Q 020637          155 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDF--KGRFVGVLSALDFILILRELGTNGSNLTEEELETH  232 (323)
Q Consensus       155 ~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~--~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~  232 (323)
                      .++.++|  ..+++++.++.++.+|+++|.+++++.+||+|++  .++++|+||.+|+.....    .       .    
T Consensus       108 ~~~~~im--~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~~lvGiVt~~Dl~~~~~----~-------~----  170 (514)
T 1jcn_A          108 KNFEQGF--ITDPVVLSPSHTVGDVLEAKMRHGFSGIPITETGTMGSKLVGIVTSRDIDFLAE----K-------D----  170 (514)
T ss_dssp             HTCCTTS--CSSCCCCCC-----------------CEESCC--------CCEECTTTTC---------------------
T ss_pred             hhhhhcc--ccCCEEECCCCCHHHHHHHHHhcCCCEEEEEeCCCcCCEEEEEEEHHHHHhhhh----c-------c----
Confidence            3677889  4678999999999999999999999999999853  489999999999843110    0       0    


Q ss_pred             hHHHHHHHHHHhhcccccCCCCCCCCC--CcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccc
Q 020637          233 TISAWKVGKLQLNLKRQMDGNGRPCPR--PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDIL  310 (323)
Q Consensus       233 ~i~~~~~~~~~~~~~~~~~~~~~im~~--~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl  310 (323)
                           ...           .+.++|++  +++++.++++|.+|+.+|.++++++|||+|+   +|   +|+||||++||+
T Consensus       171 -----~~~-----------~v~~vm~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVVd~---~g---~lvGiIt~~Dll  228 (514)
T 1jcn_A          171 -----HTT-----------LLSEVMTPRIELVVAPAGVTLKEANEILQRSKKGKLPIVND---CD---ELVAIIARTDLK  228 (514)
T ss_dssp             --------------------------CCBCCCCEETTCCSTTTTTHHHHHTCSCCCEESS---SS---CCC----CCCCS
T ss_pred             -----CCC-----------CHHHHhCCCCCCeEECCCCCHHHHHHHHHHcCCCcccEECC---CC---eEEEEEEHHHHH
Confidence                 000           01236888  8999999999999999999999999999985   35   899999999999


Q ss_pred             cc
Q 020637          311 KC  312 (323)
Q Consensus       311 ~~  312 (323)
                      ++
T Consensus       229 ~~  230 (514)
T 1jcn_A          229 KN  230 (514)
T ss_dssp             SC
T ss_pred             HH
Confidence            98

>4aef_A Neopullulanase (alpha-amylase II); hydrolase, thermostability, high temperature; 2.34A {Pyrococcus furiosus}

Probab=99.19  E-value=3.4e-11  Score=123.23  Aligned_cols=68  Identities=26%  Similarity=0.455  Sum_probs=60.3

Q ss_pred             eeeEEEEEeeCCCceEEEEeccCCCCCC-CCCCCCCCCCCeEEEEEEeCCceEEEEEEEcCeeecCCCCCee
Q 020637           19 ILVPVRFIWPNGGRRVSLSGSFTRWSEP-MPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWRHDENQPHV   89 (323)
Q Consensus        19 ~~~~v~F~w~~~~~~V~l~Gsf~~W~~~-~~m~~~~~~~g~~~~~~~LppG~y~YkFiVDG~w~~d~~~p~~   89 (323)
                      ....|.|.++.+|+.++|.|+||+|.+. .+|++.   ++.|.+++.||||.|+|||+|||.|..||.+|..
T Consensus        15 ~~~~~~~~~~~~~~~~yl~G~Fn~w~~~~~~m~~~---g~~~~~~v~L~~G~y~Y~f~vdg~~~~dp~n~~~   83 (645)
T 4aef_A           15 RVAEVEFSLIREGSYAYLLGDFNAFNEGSFRMEQE---GKNWKIKIALPEGVWHYAFSIDGKFVLDPDNPER   83 (645)
T ss_dssp             EEEEEEEEEECCSSCEEEEETTTTTCTTSSEEEEC---SSEEEEEEEECSEEEEEEEEETTEEECCTTCCCE
T ss_pred             eEEEEEEecCCCCeEEEEEEcCCCCCCCcccceEc---CCEEEEEEEeCCceEEEEEEECCeEecCCCCCCc
Confidence            3677899999999999999999999874 577663   5899999999999999999999999999999854

>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}

Probab=99.18  E-value=3e-11  Score=88.48  Aligned_cols=47  Identities=13%  Similarity=0.181  Sum_probs=43.1

Q ss_pred             CeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHH
Q 020637          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILIL  214 (323)
Q Consensus       166 ~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l  214 (323)
                      +++++++++++.+|+++|.+++++++||+|  .++++||||.+|+++.+
T Consensus         1 k~vtv~p~~tv~ea~~~M~~~~i~~~~V~d--~~~lvGIvT~~Di~~~~   47 (70)
T 3ghd_A            1 KAIVVQPKDTVDRVAKILSRNKAGSAVVME--GDEILGVVTERDILDKV   47 (70)
T ss_dssp             CEEEECTTCBHHHHHHHHHHTTCSEEEEEE--TTEEEEEEEHHHHHHHT
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEEE--CCEEEEEEEHHHHHHHH
Confidence            589999999999999999999999999998  37999999999997543

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1

Probab=99.12  E-value=8.7e-12  Score=123.68  Aligned_cols=110  Identities=15%  Similarity=0.324  Sum_probs=0.4

Q ss_pred             ccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHHH
Q 020637          158 YELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAW  237 (323)
Q Consensus       158 ~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~~  237 (323)
                      .++|  ..++++++++.++.+|.++|.++++..+||+|+  ++++|+||.+|++.      . . ..           . 
T Consensus        96 ~~~m--~~~~~~v~~~~tv~ea~~~~~~~~~~~~pVvd~--~~lvGivt~~Dl~~------~-~-~~-----------~-  151 (486)
T 2cu0_A           96 ERLI--VEDVITIAPDETVDFALFLMEKHGIDGLPVVED--EKVVGIITKKDIAA------R-E-GK-----------L-  151 (486)
T ss_dssp             C-------------------------------------------------------------------------------
T ss_pred             hhcc--ccCceEECCCCCHHHHHHHHHHcCCcEEEEEEC--CEEEEEEEHHHhcc------C-C-CC-----------C-
Confidence            4567  478999999999999999999999999999985  79999999999852      0 0 00           0 


Q ss_pred             HHHHHHhhcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637          238 KVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (323)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~  312 (323)
                                     +.++|+++++++.+++++.+++.+|.+++++++||+|+   .|   +++||||..||++.
T Consensus       152 ---------------v~~im~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVde---~g---~lvGiiT~~Dil~~  205 (486)
T 2cu0_A          152 ---------------VKELMTKEVITVPESIEVEEALKIMIENRIDRLPVVDE---RG---KLVGLITMSDLVAR  205 (486)
T ss_dssp             ---------------------------------------------------------------------------
T ss_pred             ---------------HHHHccCCCeEECCcCcHHHHHHHHHHcCCCEEEEEec---CC---eEEEEEEHHHHHHh
Confidence                           12268888999999999999999999999999999985   35   79999999999998

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1

Probab=98.95  E-value=1.2e-09  Score=96.31  Aligned_cols=101  Identities=19%  Similarity=0.233  Sum_probs=54.0

Q ss_pred             ccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhh
Q 020637          154 THTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHT  233 (323)
Q Consensus       154 ~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~  233 (323)
                      ..++.++|  +.+++++.+++++.+|+++|.+++++.+||+|+ .|+++|+||.+|+++.+......             
T Consensus        71 ~~~v~~im--~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~lvGiit~~Dil~~~~~~~~~-------------  134 (213)
T 1vr9_A           71 DSSVFNKV--SLPDFFVHEEDNITHALLLFLEHQEPYLPVVDE-EMRLKGAVSLHDFLEALIEALAM-------------  134 (213)
T ss_dssp             TSBSGGGC--BCTTCCEETTSBHHHHHHHHHHCCCSEEEEECT-TCBEEEEEEHHHHHHHHHHSCC--------------
T ss_pred             CCcHHHHc--cCCCEEECCCCcHHHHHHHHHHhCCCEEEEEcC-CCEEEEEEEHHHHHHHHHHHhcC-------------
Confidence            45788999  468899999999999999999999999999995 68999999999998766532110             


Q ss_pred             HHHHHHHHHHhhcccccCCCCCCCCCC-cEEeCCCCCHHHHHHHHHHcCCCEEeEEec
Q 020637          234 ISAWKVGKLQLNLKRQMDGNGRPCPRP-LVQAGPYDSLKEVALKILQNKVATVPIIHS  290 (323)
Q Consensus       234 i~~~~~~~~~~~~~~~~~~~~~im~~~-~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~  290 (323)
                          .+.                +.+- +.+.....+|.+|+.+|.+++++.+||++.
T Consensus       135 ----~~~----------------~~~l~~~~~~~~~~l~~~~~~l~~~~~~~l~V~~~  172 (213)
T 1vr9_A          135 ----DVP----------------GIRFSVLLEDKPGELRKVVDALALSNINILSVITT  172 (213)
T ss_dssp             ----------------------------------------------------------
T ss_pred             ----CCC----------------cEEEEEEeCCCCccHHHHHHHHHHCCCcEEEEEEE
Confidence                000                0100 011123335999999999999999999865

>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}

Probab=98.92  E-value=1.1e-09  Score=79.98  Aligned_cols=45  Identities=27%  Similarity=0.372  Sum_probs=42.0

Q ss_pred             cEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637          261 LVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (323)
Q Consensus       261 ~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~  312 (323)
                      ++++.|+++|.+|+.+|.+++++++||+|+    |   +++||||.+||++.
T Consensus         2 ~vtv~p~~tv~ea~~~M~~~~i~~~~V~d~----~---~lvGIvT~~Di~~~   46 (70)
T 3ghd_A            2 AIVVQPKDTVDRVAKILSRNKAGSAVVMEG----D---EILGVVTERDILDK   46 (70)
T ss_dssp             EEEECTTCBHHHHHHHHHHTTCSEEEEEET----T---EEEEEEEHHHHHHH
T ss_pred             CEEECCCCcHHHHHHHHHHcCCCEEEEEEC----C---EEEEEEEHHHHHHH
Confidence            689999999999999999999999999984    4   89999999999865

>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}

Probab=98.83  E-value=3.1e-09  Score=89.86  Aligned_cols=54  Identities=22%  Similarity=0.396  Sum_probs=50.3

Q ss_pred             CCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637          253 NGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (323)
Q Consensus       253 ~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~  312 (323)
                      ++++|+++++++.++++|.+|+.+|.+++++++||+|+   +|   +++||||.+||+++
T Consensus        20 V~diM~~~v~~v~~~~tl~~a~~~m~~~~~~~~pVvd~---~g---~lvGiit~~Dll~~   73 (170)
T 4esy_A           20 IRDILTSPVVTVREDDTLDAVAKTMLEHQIGCAPVVDQ---NG---HLVGIITESDFLRG   73 (170)
T ss_dssp             GGGGCCSCCCCEETTSBHHHHHHHHHHTTCSEEEEECT---TS---CEEEEEEGGGGGGG
T ss_pred             HHHhcCCCCcEECCcCcHHHHHHHHHHcCCeEEEEEcC---Cc---cEEEEEEHHHHHHH
Confidence            45789999999999999999999999999999999985   35   89999999999987

>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1

Probab=98.62  E-value=2.2e-08  Score=90.92  Aligned_cols=57  Identities=11%  Similarity=0.136  Sum_probs=51.1

Q ss_pred             CCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637          252 GNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (323)
Q Consensus       252 ~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~  312 (323)
                      .++++|+++++++.++++|.+|+.+|.+++++++||||++ +++   +|+||||++||+++
T Consensus        14 ~v~diMt~~vvtv~~~~tv~~~~~lm~~~~~~~~PVVd~~-~~~---~LvGiIt~~dl~~~   70 (250)
T 2d4z_A           14 QVGDIMVRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDTP-DTN---TLLGSIDRTEVEGL   70 (250)
T ss_dssp             BTTSSSBSSCCCEETTCBHHHHHHHHHHCCCSEEEEESCT-TTC---BEEEEEEHHHHHHH
T ss_pred             ChHHhcCCCCeEECCCCCHHHHHHHHHhcCCCEEEEEecC-CCC---eEEEEEEHHHHHHH
Confidence            3567999999999999999999999999999999999852 224   79999999999987

>2z0b_A GDE5, KIAA1434, putative glycerophosphodiester phosphodiesterase; CBM20 domain, starch-binding, hydrolase, STR genomics, NPPSFA; 2.00A {Homo sapiens}

Probab=98.55  E-value=1.5e-07  Score=77.11  Aligned_cols=59  Identities=22%  Similarity=0.429  Sum_probs=48.9

Q ss_pred             CeeeEEEEEeeC---CCceEEEEec---cCCCCCC--CCCCCCC--CCCCeEEEEEEeCCce-EEEEEEE
Q 020637           18 SILVPVRFIWPN---GGRRVSLSGS---FTRWSEP--MPMSPSE--GCPAVFQIICRLPPGH-HQYKFYV   76 (323)
Q Consensus        18 ~~~~~v~F~w~~---~~~~V~l~Gs---f~~W~~~--~~m~~~~--~~~g~~~~~~~LppG~-y~YkFiV   76 (323)
                      ...+.|+|+...   .++.|+|+||   +.+|++.  ++|.+..  .....|++++.||+|. ++|||++
T Consensus         6 ~~~v~V~F~v~~~~~~ge~v~vvGs~~~LG~W~p~~av~L~~~~~~~~~~~W~~~v~lp~~~~~eYKyvi   75 (131)
T 2z0b_A            6 SGPSQVAFEIRGTLLPGEVFAICGSCDALGNWNPQNAVALLPENDTGESMLWKATIVLSRGVSVQYRYFK   75 (131)
T ss_dssp             CCCEEEEEEEECCCCTTCEEEEEESSGGGTTTCGGGCEECEECCTTCCSSEEEEEEEECTTCCEEEEEEE
T ss_pred             CCeEEEEEEEeeecCCCCEEEEEeCCCcCCCCCccccccccccccCCCCCeEEEEEEcCCCCcEEEEEEE
Confidence            456889999975   4789999999   8999974  5888761  1368999999999985 9999999

>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}

Probab=98.50  E-value=2e-07  Score=74.86  Aligned_cols=58  Identities=9%  Similarity=0.113  Sum_probs=50.7

Q ss_pred             ccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHH
Q 020637          154 THTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR  215 (323)
Q Consensus       154 ~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~  215 (323)
                      ..++.++|   ++++++.+++++.+|+++|.++++..+||+|+ .|+++|+||..|+++.+.
T Consensus        68 ~~~v~~~m---~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~-~g~~~Giit~~Dil~~l~  125 (129)
T 3jtf_A           68 ALDIRSLV---RPAVFIPEVKRLNVLLREFRASRNHLAIVIDE-HGGISGLVTMEDVLEQIV  125 (129)
T ss_dssp             TSCGGGGC---BCCCEEETTCBHHHHHHHHHTSSCCEEEEECC--CCEEEEEEHHHHHHHHH
T ss_pred             CcCHHHHh---CCCeEeCCCCcHHHHHHHHHhcCCeEEEEEeC-CCCEEEEEEHHHHHHHHh
Confidence            45688888   35889999999999999999999999999995 689999999999987654

>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}

Probab=98.50  E-value=3.6e-07  Score=75.56  Aligned_cols=58  Identities=16%  Similarity=0.289  Sum_probs=53.2

Q ss_pred             ccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHH
Q 020637          154 THTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR  215 (323)
Q Consensus       154 ~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~  215 (323)
                      ..++.++|   ++++++.+++++.+|+++|.++++..+||+|+ .|+++||||..|+++.+.
T Consensus        85 ~~~v~~~m---~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~-~g~~vGivt~~dil~~l~  142 (153)
T 3oco_A           85 KAKISTIM---RDIVSVPENMKVPDVMEEMSAHRVPMAIVIDE-YGGTSGIITDKDVYEELF  142 (153)
T ss_dssp             TSBGGGTC---BCCEEEETTSBHHHHHHHHHHTTCSCEEEECT-TSCEEEEECHHHHHHHHH
T ss_pred             CCcHHHHh---CCCeEECCCCCHHHHHHHHHHcCCcEEEEEeC-CCCEEEEeeHHHHHHHHh
Confidence            67899999   47899999999999999999999999999995 789999999999987665

>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}

Probab=98.49  E-value=3.2e-07  Score=75.25  Aligned_cols=58  Identities=19%  Similarity=0.301  Sum_probs=52.8

Q ss_pred             ccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHH
Q 020637          154 THTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR  215 (323)
Q Consensus       154 ~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~  215 (323)
                      ..++.++|   ++++++.+++++.+|+++|.++++..+||+|+ .|+++|+||..|+++.+.
T Consensus        87 ~~~v~~~m---~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~-~g~~~Giit~~dil~~l~  144 (148)
T 3lv9_A           87 KIELEEIL---RDIIYISENLTIDKALERIRKEKLQLAIVVDE-YGGTSGVVTIEDILEEIV  144 (148)
T ss_dssp             CCCGGGTC---BCCEEEETTSBHHHHHHHHHHHTCSEEEEECT-TSSEEEEEEHHHHHHHHH
T ss_pred             CccHHHhc---CCCeEECCCCCHHHHHHHHHhcCCeEEEEEeC-CCCEEEEEEHHHHHHHHh
Confidence            67899999   46899999999999999999999999999995 789999999999987654

>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}

Probab=98.49  E-value=1.6e-07  Score=75.20  Aligned_cols=58  Identities=14%  Similarity=0.238  Sum_probs=50.6

Q ss_pred             cccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHH
Q 020637          153 STHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILIL  214 (323)
Q Consensus       153 ~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l  214 (323)
                      ...++.++|   ++++++.+++++.+|+++|.+++++.+||+|+ .|+++||||..|+++.+
T Consensus        67 ~~~~v~~~m---~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~~~Giit~~dll~~l  124 (127)
T 3nqr_A           67 EAFSMDKVL---RTAVVVPESKRVDRMLKEFRSQRYHMAIVIDE-FGGVSGLVTIEDILELI  124 (127)
T ss_dssp             CCCCHHHHC---BCCCEEETTCBHHHHHHHHHHTTCCEEEEECT-TSCEEEEEEHHHHHHHC
T ss_pred             CCCCHHHHc---CCCeEECCCCcHHHHHHHHHhcCCeEEEEEeC-CCCEEEEEEHHHHHHHH
Confidence            345778888   34789999999999999999999999999995 78999999999997654

>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}

Probab=98.49  E-value=2.2e-07  Score=74.57  Aligned_cols=59  Identities=15%  Similarity=0.259  Sum_probs=52.4

Q ss_pred             cccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHH
Q 020637          153 STHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR  215 (323)
Q Consensus       153 ~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~  215 (323)
                      ...++.++|   ++++++.+++++.+|+++|.++++..+||+|+ .|+++|+||..|+++.+.
T Consensus        70 ~~~~v~~~m---~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~-~g~~vGivt~~dil~~l~  128 (130)
T 3i8n_A           70 GQKQLGAVM---RPIQVVLNNTALPKVFDQMMTHRLQLALVVDE-YGTVLGLVTLEDIFEHLV  128 (130)
T ss_dssp             TTSBHHHHS---EECCEEETTSCHHHHHHHHHHHTCCEEEEECT-TSCEEEEEEHHHHHHHHH
T ss_pred             CcCCHHHHh---cCCcCcCCCCcHHHHHHHHHHcCCeEEEEEcC-CCCEEEEEEHHHHHHHHc
Confidence            356788999   35889999999999999999999999999995 789999999999987653

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}

Probab=98.47  E-value=2.5e-07  Score=77.48  Aligned_cols=74  Identities=19%  Similarity=0.219  Sum_probs=58.8

Q ss_pred             HHHHHHHHHhhhhhccccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHH
Q 020637          138 EADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR  215 (323)
Q Consensus       138 ~~~l~~~~~~~~~~l~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~  215 (323)
                      ..++...+..-.......++.++|  ...++++.+++++.+|+++|.++++..+||+|+  |+++|+||..|+++.+.
T Consensus        76 ~~dl~~~~~~~~~~~~~~~v~~~m--~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~--g~~~Giit~~dil~~~~  149 (165)
T 3fhm_A           76 ERDLVKAVAGQGAASLQQSVSVAM--TKNVVRCQHNSTTDQLMEIMTGGRFRHVPVEEN--GRLAGIISIGDVVKARI  149 (165)
T ss_dssp             HHHHHHHHHHHGGGGGTSBGGGTS--BSSCCCBCTTCBHHHHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHHTT
T ss_pred             HHHHHHHHHhcCCccccCCHHHHh--cCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHHHHHHH
Confidence            455543322222234568899999  478899999999999999999999999999994  89999999999976543

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*

Probab=98.45  E-value=1.2e-07  Score=84.82  Aligned_cols=54  Identities=17%  Similarity=0.140  Sum_probs=49.8

Q ss_pred             CCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637          253 NGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (323)
Q Consensus       253 ~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~  312 (323)
                      +.++|+++++++.+++++.+|+.+|.+++++++||+|+   +|   +++||||..||+++
T Consensus         9 v~~im~~~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~---~~---~l~Giit~~di~~~   62 (245)
T 3l2b_A            9 VEDLEMDKIAPLAPEVSLKMAWNIMRDKNLKSIPVADG---NN---HLLGMLSTSNITAT   62 (245)
T ss_dssp             GGGSCCBCCCCBCTTCBHHHHHHHHHHTTCSEEEEECT---TC---BEEEEEEHHHHHHH
T ss_pred             HHHhcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcC---CC---EEEEEEEHHHHHHH
Confidence            45689999999999999999999999999999999985   35   89999999999987

>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}

Probab=98.44  E-value=1.9e-07  Score=75.32  Aligned_cols=58  Identities=7%  Similarity=0.088  Sum_probs=51.4

Q ss_pred             ccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHH
Q 020637          154 THTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR  215 (323)
Q Consensus       154 ~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~  215 (323)
                      ..++.++|   ++++++.+++++.+|+++|.+++++.+||+|+ .|+++||||..|+++.+.
T Consensus        69 ~~~v~~~m---~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~-~g~lvGiit~~Dil~~l~  126 (130)
T 3hf7_A           69 KEIMLRAA---DEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDE-YGDIQGLVTVEDILEEIV  126 (130)
T ss_dssp             HHHHHHHS---BCCCEEETTCBHHHHHHHHHHHCCCEEEEECT-TSCEEEEEEHHHHHHHHH
T ss_pred             hhhHHHhc---cCCeEeCCCCcHHHHHHHHHhcCCeEEEEEcC-CCCEEEEeeHHHHHHHHh
Confidence            45678888   46889999999999999999999999999995 789999999999987653

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1

Probab=98.44  E-value=3.4e-07  Score=73.69  Aligned_cols=60  Identities=22%  Similarity=0.382  Sum_probs=53.6

Q ss_pred             ccccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHH
Q 020637          152 LSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR  215 (323)
Q Consensus       152 l~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~  215 (323)
                      ....++.++|  +..++++++++++.+|+++|.++++..+||+|  +|+++|+||..|+++.+.
T Consensus        71 ~~~~~v~~~m--~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd--~g~~~Giit~~dll~~~~  130 (135)
T 2rc3_A           71 VKDTQVKEIM--TRQVAYVDLNNTNEDCMALITEMRVRHLPVLD--DGKVIGLLSIGDLVKDAI  130 (135)
T ss_dssp             GGGSBGGGTS--BCSCCCBCTTCBHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHHHH
T ss_pred             cccCCHHHhc--cCCCeEECCCCcHHHHHHHHHHhCCCEEEEEe--CCEEEEEEEHHHHHHHHH
Confidence            3567899999  46889999999999999999999999999999  489999999999987654

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*

Probab=98.44  E-value=2.9e-07  Score=72.55  Aligned_cols=59  Identities=20%  Similarity=0.315  Sum_probs=52.5

Q ss_pred             ccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHH
Q 020637          154 THTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR  215 (323)
Q Consensus       154 ~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~  215 (323)
                      ..++.++|  +..++++.+++++.+|+++|.++++..+||+|+ .|+++|+||..|+++.+.
T Consensus        61 ~~~v~~~~--~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~-~g~~~Givt~~dl~~~l~  119 (122)
T 3kpb_A           61 KKTIEEIM--TRNVITAHEDEPVDHVAIKMSKYNISGVPVVDD-YRRVVGIVTSEDISRLFG  119 (122)
T ss_dssp             CCBGGGTS--BSSCCCEETTSBHHHHHHHHHHHTCSEEEEECT-TCBEEEEEEHHHHHHHHC
T ss_pred             ccCHHHHh--cCCCeEECCCCCHHHHHHHHHHhCCCeEEEECC-CCCEEEEEeHHHHHHHhh
Confidence            34789999  468899999999999999999999999999995 689999999999987653

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}

Probab=98.43  E-value=2.4e-07  Score=76.62  Aligned_cols=60  Identities=18%  Similarity=0.401  Sum_probs=54.2

Q ss_pred             cccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHh
Q 020637          153 STHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRE  216 (323)
Q Consensus       153 ~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~  216 (323)
                      ...++.++|  ..+++++++++++.+|+++|.+++++.+||+|  +|+++|+||..|+++.+..
T Consensus        76 ~~~~v~~~m--~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd--~g~~~Giit~~dil~~l~~  135 (157)
T 4fry_A           76 KATRVEEIM--TAKVRYVEPSQSTDECMALMTEHRMRHLPVLD--GGKLIGLISIGDLVKSVIA  135 (157)
T ss_dssp             SSCBHHHHS--BSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHHHHT
T ss_pred             cccCHHHHc--CCCCcEECCCCcHHHHHHHHHHcCCCEEEEEE--CCEEEEEEEHHHHHHHHHH
Confidence            467899999  46889999999999999999999999999999  4899999999999887754

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}

Probab=98.43  E-value=2.5e-07  Score=77.90  Aligned_cols=62  Identities=16%  Similarity=0.299  Sum_probs=55.1

Q ss_pred             cccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhh
Q 020637          153 STHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILREL  217 (323)
Q Consensus       153 ~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~  217 (323)
                      ...++.++|  ...++++.+++++.+|+++|.+++++.+||+|+ .|+++||||.+|+++.+...
T Consensus        96 ~~~~v~~~m--~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~~vGiit~~dil~~~~~~  157 (180)
T 3sl7_A           96 YGKVVGDLM--TPSPLVVRDSTNLEDAARLLLETKFRRLPVVDA-DGKLIGILTRGNVVRAALQI  157 (180)
T ss_dssp             TTCBHHHHS--EESCCCEETTSBHHHHHHHHTTSTTCEEEEECT-TCBEEEEEEHHHHHHHHHHH
T ss_pred             ccccHHHHh--CCCceEeCCCCcHHHHHHHHHHcCCCEEEEECC-CCeEEEEEEHHHHHHHHHHH
Confidence            457789999  467899999999999999999999999999995 78999999999999876543

>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}

Probab=98.43  E-value=3.8e-07  Score=77.15  Aligned_cols=58  Identities=17%  Similarity=0.244  Sum_probs=53.2

Q ss_pred             ccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHH
Q 020637          154 THTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR  215 (323)
Q Consensus       154 ~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~  215 (323)
                      ..++.++|   ++++++.+++++.+|+++|.++++..+||+|+ .|+++||||..|+++.+.
T Consensus       106 ~~~v~~im---~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~-~g~lvGiit~~Dil~~l~  163 (172)
T 3lhh_A          106 RLELVDLV---KNCNFVPNSLSGMELLEHFRTTGSQMVFVVDE-YGDLKGLVTLQDMMDALT  163 (172)
T ss_dssp             CCCGGGGC---BCCEEEETTCCHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHHHHH
T ss_pred             cccHHHHh---cCCeEeCCCCCHHHHHHHHHHcCCeEEEEEeC-CCCEEEEeeHHHHHHHHh
Confidence            67899999   57899999999999999999999999999995 689999999999988664

>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}

Probab=98.42  E-value=4.5e-07  Score=79.49  Aligned_cols=61  Identities=23%  Similarity=0.314  Sum_probs=55.1

Q ss_pred             cccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHh
Q 020637          153 STHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRE  216 (323)
Q Consensus       153 ~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~  216 (323)
                      ...++.++|  +++++++.+++++.+|+++|.++++.++||+|+ .|+++||||..|+++.+..
T Consensus       114 ~~~~v~~im--~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVD~-~g~lvGiIT~~Dil~~i~~  174 (205)
T 3kxr_A          114 PHEPLISLL--SEDSRALTANTTLLDAAEAIEHSREIELPVIDD-AGELIGRVTLRAATALVRE  174 (205)
T ss_dssp             TTSBGGGGC--CSSCCCEETTSCHHHHHHHHHTSSCSEEEEECT-TSBEEEEEEHHHHHHHHHH
T ss_pred             CcchHHHHh--cCCCeEECCCCCHHHHHHHHHhcCCCEEEEEcC-CCeEEEEEEHHHHHHHHHH
Confidence            356799999  568899999999999999999999999999995 7899999999999987764

>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}

Probab=98.42  E-value=1.9e-07  Score=75.79  Aligned_cols=58  Identities=16%  Similarity=0.184  Sum_probs=51.1

Q ss_pred             cccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHH
Q 020637          153 STHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILIL  214 (323)
Q Consensus       153 ~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l  214 (323)
                      ...++.++|   ++++++.+++++.+|+++|.++++..+||+|+ .|+++||||..|+++.+
T Consensus        68 ~~~~v~~~m---~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~-~g~lvGiit~~Dil~~l  125 (136)
T 3lfr_A           68 DSDDVKKLL---RPATFVPESKRLNVLLREFRANHNHMAIVIDE-YGGVAGLVTIEDVLEQI  125 (136)
T ss_dssp             GGCCGGGTC---BCCCEEETTCBHHHHHHHHHHHTCCEEEEECT-TSCEEEEEEHHHHHTTC
T ss_pred             CCcCHHHHc---CCCeEECCCCcHHHHHHHHHhcCCeEEEEEeC-CCCEEEEEEHHHHHHHH
Confidence            356788999   34899999999999999999999999999995 78999999999997543

>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}

Probab=98.42  E-value=1.5e-07  Score=78.87  Aligned_cols=61  Identities=15%  Similarity=0.439  Sum_probs=54.4

Q ss_pred             ccccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhh
Q 020637          152 LSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILREL  217 (323)
Q Consensus       152 l~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~  217 (323)
                      +...++.++|  +++++++.+++++.+|+++|.++++  +||+|+ .|+++||||.+|+++.+...
T Consensus        83 ~~~~~v~~im--~~~~~~v~~~~~l~~~~~~m~~~~~--lpVVd~-~g~l~GiiT~~Dil~~~~~~  143 (156)
T 3k6e_A           83 MADTDIVHMT--KTDVAVVSPDFTITEVLHKLVDESF--LPVVDA-EGIFQGIITRKSILKAVNAL  143 (156)
T ss_dssp             HTTSBGGGTC--BCSCCCBCTTCCHHHHHHHTTTSSE--EEEECT-TSBEEEEEEHHHHHHHHHHH
T ss_pred             ccccCHHHhh--cCCceecccccHHHHHHHHHHHcCC--eEEEec-CCEEEEEEEHHHHHHHHHHH
Confidence            4567899999  5789999999999999999999986  999995 79999999999999877654

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}

Probab=98.41  E-value=1.6e-07  Score=75.21  Aligned_cols=58  Identities=22%  Similarity=0.261  Sum_probs=52.5

Q ss_pred             cccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHH
Q 020637          155 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR  215 (323)
Q Consensus       155 ~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~  215 (323)
                      .++.++|  +.+++++.+++++.+|+++|.++++..+||+|+ .|+++|+||..|+++.+.
T Consensus        68 ~~v~~~m--~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~-~g~~~Giit~~dll~~l~  125 (128)
T 3gby_A           68 EKLGEEL--LETVRSYRPGEQLFDNLISVAAAKCSVVPLADE-DGRYEGVVSRKRILGFLA  125 (128)
T ss_dssp             CBCCGGG--CBCCCCBCTTSBGGGSHHHHHHCSSSEEEEECT-TCBEEEEEEHHHHHHHHH
T ss_pred             CcHHHHc--cCCCcEECCCCCHHHHHHHHHhCCCcEEEEECC-CCCEEEEEEHHHHHHHHH
Confidence            5688999  467889999999999999999999999999995 789999999999987664

>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}

Probab=98.41  E-value=2.9e-07  Score=75.10  Aligned_cols=61  Identities=16%  Similarity=0.311  Sum_probs=53.4

Q ss_pred             cccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHh
Q 020637          153 STHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRE  216 (323)
Q Consensus       153 ~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~  216 (323)
                      ...++.++|  ...++++.+++++.+|+++|.++++..+||+|+ .|+++|+||.+|+++.+..
T Consensus        83 ~~~~v~~~m--~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~-~g~~~Giit~~dil~~~~~  143 (152)
T 4gqw_A           83 NGKLVGDLM--TPAPLVVEEKTNLEDAAKILLETKYRRLPVVDS-DGKLVGIITRGNVVRAALQ  143 (152)
T ss_dssp             -CCBHHHHS--EESCCCEESSSBHHHHHHHHHHSSCCEEEEECT-TSBEEEEEEHHHHHHHHHC
T ss_pred             ccccHHHhc--CCCceEECCCCcHHHHHHHHHHCCCCEEEEECC-CCcEEEEEEHHHHHHHHHh
Confidence            456788999  457889999999999999999999999999994 7899999999999876653

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0

Probab=98.40  E-value=6.2e-07  Score=73.48  Aligned_cols=59  Identities=14%  Similarity=0.321  Sum_probs=53.0

Q ss_pred             cccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHh
Q 020637          153 STHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRE  216 (323)
Q Consensus       153 ~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~  216 (323)
                      ...++.++|  ...++++.+++++.+|+++|.++++  +||+|+ .|+++|+||.+|+++.+..
T Consensus        85 ~~~~v~~~m--~~~~~~v~~~~~l~~a~~~~~~~~~--l~Vvd~-~g~~~Giit~~dil~~l~~  143 (150)
T 3lqn_A           85 EEMKVEQVM--KQDIPVLKLEDSFAKALEMTIDHPF--ICAVNE-DGYFEGILTRRAILKLLNK  143 (150)
T ss_dssp             GGCBGGGTC--BSSCCEEETTCBHHHHHHHHHHCSE--EEEECT-TCBEEEEEEHHHHHHHHHH
T ss_pred             hcCCHHHHh--cCCCceeCCCCCHHHHHHHHHhCCE--EEEECC-CCcEEEEEEHHHHHHHHHH
Confidence            467899999  4788999999999999999999998  999995 7899999999999887664

>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}

Probab=98.38  E-value=2.1e-07  Score=77.35  Aligned_cols=56  Identities=16%  Similarity=0.226  Sum_probs=49.8

Q ss_pred             CCCCCCCC--CcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637          252 GNGRPCPR--PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (323)
Q Consensus       252 ~~~~im~~--~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~  312 (323)
                      .++++|++  +++++.+++++.+|+.+|.+++++++||+|+  +++   +++||||.+||+++
T Consensus        39 ~v~diM~~~~~~~~v~~~~~i~~a~~~m~~~~~~~~pVvd~--~~~---~lvGivt~~dl~~~   96 (156)
T 3oi8_A           39 EVRDAMITRSRMNVLKENDSIERITAYVIDTAHSRFPVIGE--DKD---EVLGILHAKDLLKY   96 (156)
T ss_dssp             BGGGTCEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESS--STT---CEEEEEEGGGGGGG
T ss_pred             CHhheeeeHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcC--CCC---cEEEEEEHHHHHHH
Confidence            35678986  7999999999999999999999999999985  334   79999999999987

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1

Probab=98.36  E-value=6.8e-07  Score=74.51  Aligned_cols=60  Identities=17%  Similarity=0.343  Sum_probs=54.0

Q ss_pred             cccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHh
Q 020637          153 STHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRE  216 (323)
Q Consensus       153 ~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~  216 (323)
                      ...++.++|  +..++++++++++.+|+++|.++++..+||+|+  |+++||||..|+++.+..
T Consensus        76 ~~~~v~~im--~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~--g~lvGiit~~dil~~~~~  135 (160)
T 2o16_A           76 FETPLFEVM--HTDVTSVAPQAGLKESAIYMQKHKIGCLPVVAK--DVLVGIITDSDFVTIAIN  135 (160)
T ss_dssp             CCCBHHHHS--CSCEEEBCTTSBHHHHHHHHHHTTCSCEEEEET--TEEEEEECHHHHHHHHHH
T ss_pred             cccCHHHHh--cCCCeEECCCCCHHHHHHHHHHhCCCEEEEEEC--CEEEEEEEHHHHHHHHHH
Confidence            467889999  468999999999999999999999999999994  899999999999886653

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1

Probab=98.36  E-value=4.5e-07  Score=72.67  Aligned_cols=60  Identities=17%  Similarity=0.371  Sum_probs=53.7

Q ss_pred             ccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHh
Q 020637          154 THTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRE  216 (323)
Q Consensus       154 ~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~  216 (323)
                      ..++.++|  ..+++++.+++++.+|++.|.++++..+||+|+ .|+++|+||..|+++.+..
T Consensus        66 ~~~v~~~~--~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~-~g~~~Giit~~dll~~~~~  125 (133)
T 2ef7_A           66 ETKAEEFM--TASLITIREDSPITGALALMRQFNIRHLPVVDD-KGNLKGIISIRDITRAIDD  125 (133)
T ss_dssp             TCBGGGTS--EECCCCEETTSBHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHHHHHH
T ss_pred             ccCHHHHc--CCCCEEECCCCCHHHHHHHHHHcCCCEEEEECC-CCeEEEEEEHHHHHHHHHH
Confidence            56889999  468899999999999999999999999999994 6899999999999876653

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1

Probab=98.35  E-value=4.3e-07  Score=71.77  Aligned_cols=59  Identities=17%  Similarity=0.268  Sum_probs=52.8

Q ss_pred             cccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHH
Q 020637          153 STHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR  215 (323)
Q Consensus       153 ~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~  215 (323)
                      ...++.++|  ...++++++++++.+|++.|.++++..+||+|+  |+++|+||..|+++.+.
T Consensus        63 ~~~~v~~~m--~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~--~~~~Gvit~~dl~~~l~  121 (125)
T 1pbj_A           63 AEVKVWEVM--ERDLVTISPRATIKEAAEKMVKNVVWRLLVEED--DEIIGVISATDILRAKM  121 (125)
T ss_dssp             TTSBHHHHC--BCGGGEECTTSCHHHHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHHHC
T ss_pred             cccCHHHHc--CCCCeEECCCCCHHHHHHHHHhcCCcEEEEEEC--CEEEEEEEHHHHHHHHH
Confidence            467889999  467899999999999999999999999999994  89999999999987553

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*

Probab=98.35  E-value=4e-07  Score=75.75  Aligned_cols=66  Identities=18%  Similarity=0.239  Sum_probs=57.0

Q ss_pred             ccccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCC---eEEEEEehHHHHHHHHhhc
Q 020637          152 LSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKG---RFVGVLSALDFILILRELG  218 (323)
Q Consensus       152 l~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~---~~vGilT~~D~i~~l~~~~  218 (323)
                      ....++.++|....+++++++++++.+|+++|.++++..+||+|+ .|   +++|+||..|+++.+..+.
T Consensus        78 ~~~~~v~~~m~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~~~~~vGiit~~dil~~l~~~~  146 (159)
T 3fv6_A           78 LTSVPVHIIMTRMPNITVCRREDYVMDIAKHLIEKQIDALPVIKD-TDKGFEVIGRVTKTNMTKILVSLS  146 (159)
T ss_dssp             TTTCBGGGTSEETTSCCCBCTTSBHHHHHHHHHHHTCSEEEEEEE-CSSSEEEEEEEEHHHHHHHHHHHH
T ss_pred             ccCcCHHHHHcCCCCcEEECCCCCHHHHHHHHHHcCCcEEEEEeC-CCcceeEEEEEEHHHHHHHHHHHh
Confidence            356789999953338899999999999999999999999999995 66   9999999999998776554

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A

Probab=98.35  E-value=4.9e-07  Score=73.41  Aligned_cols=57  Identities=23%  Similarity=0.322  Sum_probs=51.4

Q ss_pred             ccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHH
Q 020637          154 THTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILIL  214 (323)
Q Consensus       154 ~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l  214 (323)
                      ..++.++|  +.++++++++ ++.+|+++|.+++++.+||+|+ .|+++|+||..|+++.+
T Consensus        70 ~~~v~~~m--~~~~~~v~~~-~l~~a~~~m~~~~~~~l~Vvd~-~g~~~Giit~~dll~~~  126 (141)
T 2rih_A           70 DGPAMPIA--NSPITVLDTD-PVHVAAEKMRRHNIRHVVVVNK-NGELVGVLSIRDLCFER  126 (141)
T ss_dssp             TSBSGGGC--BCCCEEETTS-BHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHSCH
T ss_pred             CCCHHHHc--CCCCeEEcCC-CHHHHHHHHHHcCCeEEEEEcC-CCcEEEEEEHHHHHHHH
Confidence            57899999  5689999999 9999999999999999999994 68999999999997543

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*

Probab=98.35  E-value=3.3e-07  Score=75.36  Aligned_cols=54  Identities=13%  Similarity=0.188  Sum_probs=49.4

Q ss_pred             CCCCCCC--CcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637          253 NGRPCPR--PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (323)
Q Consensus       253 ~~~im~~--~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~  312 (323)
                      ++++|.+  +++++.+++++.+|+.+|.+++++++||+|+   +|   +++|+||..||+++
T Consensus        30 v~dim~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~---~~---~~~Givt~~dl~~~   85 (149)
T 3k2v_A           30 VNDIMHTGDEIPHVGLQATLRDALLEITRKNLGMTAICDD---DM---NIIGIFTDGDLRRV   85 (149)
T ss_dssp             GGGTSBCGGGSCEECTTCBHHHHHHHHHHHTSSEEEEECT---TC---BEEEEEEHHHHHHH
T ss_pred             HHHHhcCCCCCeEECCCCcHHHHHHHHHhCCCcEEEEECC---CC---cEEEEecHHHHHHH
Confidence            4568998  9999999999999999999999999999985   35   89999999999987

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A

Probab=98.33  E-value=5.4e-07  Score=72.89  Aligned_cols=61  Identities=23%  Similarity=0.219  Sum_probs=51.0

Q ss_pred             ccccccccCCC----CCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHH
Q 020637          154 THTVYELLPDS----GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR  215 (323)
Q Consensus       154 ~~~~~dvmp~s----~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~  215 (323)
                      ..++.++|...    .+++++++++++.+|+++|.++++..+||+|+ .|+++|+||..|+++.+.
T Consensus        76 ~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~-~g~~~Giit~~dil~~l~  140 (144)
T 2nyc_A           76 SLSVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDD-VGRLVGVLTLSDILKYIL  140 (144)
T ss_dssp             CSBHHHHHHHCC------CEECTTSBHHHHHHHHHHHTCSEEEEECT-TSBEEEEEEHHHHHHHHH
T ss_pred             CccHHHHHhcCccccCCCeEECCCCcHHHHHHHHHHCCCCEEEEECC-CCCEEEEEEHHHHHHHHH
Confidence            56788888422    16899999999999999999999999999995 689999999999987664

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1

Probab=98.32  E-value=4.3e-07  Score=75.31  Aligned_cols=59  Identities=20%  Similarity=0.455  Sum_probs=53.0

Q ss_pred             cccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHH
Q 020637          153 STHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR  215 (323)
Q Consensus       153 ~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~  215 (323)
                      ...++.++|.  . ++++++++++.+|+++|.++++..+||+|+ .|+++|+||..|+++.+.
T Consensus        94 ~~~~v~~im~--~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~~vGiit~~dll~~l~  152 (157)
T 1o50_A           94 IAKNASEIML--D-PVYVHMDTPLEEALKLMIDNNIQEMPVVDE-KGEIVGDLNSLEILLALW  152 (157)
T ss_dssp             SSCBHHHHCB--C-CCCBCTTSBHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHHHHH
T ss_pred             cCCcHHHHcC--C-CeEECCCCCHHHHHHHHHHCCCcEEEEEcC-CCEEEEEEEHHHHHHHHH
Confidence            4678899994  5 899999999999999999999999999994 689999999999987665

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A

Probab=98.32  E-value=4.3e-07  Score=72.81  Aligned_cols=57  Identities=25%  Similarity=0.395  Sum_probs=51.1

Q ss_pred             cccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHH
Q 020637          153 STHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILI  213 (323)
Q Consensus       153 ~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~  213 (323)
                      ...++.++|  ...++++++++++.+|+++|.+++++.+||+|+  |+++|+||..|+++.
T Consensus        72 ~~~~v~~~m--~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~--g~~~Giit~~dil~~  128 (133)
T 1y5h_A           72 NTATAGELA--RDSIYYVDANASIQEMLNVMEEHQVRRVPVISE--HRLVGIVTEADIARH  128 (133)
T ss_dssp             TTSBHHHHH--TTCCCCEETTCCHHHHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHT
T ss_pred             cccCHHHHh--cCCCEEECCCCCHHHHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHHHHH
Confidence            356788999  468899999999999999999999999999994  899999999999753

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}

Probab=98.30  E-value=6.8e-07  Score=71.96  Aligned_cols=60  Identities=18%  Similarity=0.372  Sum_probs=52.6

Q ss_pred             cccccccccCCCCCeEEEecchhHHHHHHHHHHCC-----CCeeeeEeCCCCeEEEEEehHHHHHHHH
Q 020637          153 STHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQG-----LPMVPLWDDFKGRFVGVLSALDFILILR  215 (323)
Q Consensus       153 ~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~-----i~~lPV~d~~~~~~vGilT~~D~i~~l~  215 (323)
                      ...++.++|  ..+++++++++++.+|++.|.+++     +..+||+|+ .|+++|+||..|+++.+.
T Consensus        71 ~~~~v~~~m--~~~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~l~Vvd~-~g~~~Giit~~dll~~~~  135 (138)
T 2p9m_A           71 LETTIGDVM--TKDVITIHEDASILEAIKKMDISGKKEEIINQLPVVDK-NNKLVGIISDGDIIRTIS  135 (138)
T ss_dssp             SSCBHHHHS--CSSCCCEETTSBHHHHHHHHTCC-----CCCEEEEECT-TSBEEEEEEHHHHHHHHH
T ss_pred             CCcCHHHHh--CCCcEEECCCCCHHHHHHHHHhcCCccccccEEEEECC-CCeEEEEEEHHHHHHHHH
Confidence            466889999  468899999999999999999999     999999995 689999999999987654

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1

Probab=98.28  E-value=6.7e-07  Score=72.10  Aligned_cols=53  Identities=19%  Similarity=0.316  Sum_probs=47.9

Q ss_pred             CCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeecccccc
Q 020637          253 NGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (323)
Q Consensus       253 ~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~  311 (323)
                      ++++|.++++++.+++++.+|+.+|.+++++++||+|+   +|   +++|+||..||++
T Consensus         9 v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~---~~---~~~Givt~~dl~~   61 (138)
T 2yzi_A            9 IKVYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVIND---DG---NVVGFFTKSDIIR   61 (138)
T ss_dssp             GGGTCBCCCCEECTTSBHHHHHHHHHHHTCSEEEEECT---TS---CEEEEEEHHHHHH
T ss_pred             HHHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcC---CC---cEEEEEeHHHHHH
Confidence            34589999999999999999999999999999999984   35   8999999999984

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A

Probab=98.26  E-value=8e-07  Score=75.81  Aligned_cols=58  Identities=22%  Similarity=0.334  Sum_probs=52.1

Q ss_pred             ccccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHH
Q 020637          152 LSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL  212 (323)
Q Consensus       152 l~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~  212 (323)
                      ....++.++|  ...++++.+++++.+|+++|.+++++.+||+|+ .|+++|+||..|+++
T Consensus        72 ~~~~~v~~im--~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~~~Givt~~dll~  129 (184)
T 1pvm_A           72 PDEVPIRLVM--RKPIPKVKSDYDVKDVAAYLSENGLERCAVVDD-PGRVVGIVTLTDLSR  129 (184)
T ss_dssp             GGGSBGGGTS--BSSCCEEETTCBHHHHHHHHHHHTCSEEEEECT-TCCEEEEEEHHHHTT
T ss_pred             cccCCHHHHh--CCCCcEECCCCCHHHHHHHHHHcCCcEEEEEcC-CCeEEEEEEHHHHHH
Confidence            3567899999  468899999999999999999999999999995 689999999999964

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*

Probab=98.26  E-value=1.3e-06  Score=73.87  Aligned_cols=61  Identities=13%  Similarity=0.239  Sum_probs=54.7

Q ss_pred             cccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhh
Q 020637          153 STHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILREL  217 (323)
Q Consensus       153 ~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~  217 (323)
                      ...++.++|  +.+++++.+++++.+|+++|.+++++.+||+|  .|+++||||..|+++.+...
T Consensus       106 ~~~~v~~im--~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd--~g~~vGiit~~dll~~l~~~  166 (185)
T 2j9l_A          106 PTLKLRNIL--DLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTH--NGRLLGIITKKDVLKHIAQM  166 (185)
T ss_dssp             CCEECGGGE--ESSCCEEETTSBHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHHHHHH
T ss_pred             cCccHHHhh--CcCCeEeCCCCCHHHHHHHHHhCCCcEEEEEE--CCEEEEEEEHHHHHHHHHHh
Confidence            457889999  46789999999999999999999999999998  58999999999999877644

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}

Probab=98.26  E-value=1.7e-06  Score=71.29  Aligned_cols=60  Identities=18%  Similarity=0.337  Sum_probs=53.2

Q ss_pred             cccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhh
Q 020637          153 STHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILREL  217 (323)
Q Consensus       153 ~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~  217 (323)
                      ...++.++|  ...++++.+++++.+|+++|.++++  +||+|+ .|+++|+||.+|+++.+...
T Consensus        81 ~~~~v~~~m--~~~~~~v~~~~~l~~a~~~m~~~~~--l~Vvd~-~g~~~Giit~~dil~~~~~~  140 (157)
T 2emq_A           81 ETMKVEEVM--NRNIPRLRLDDSLMKAVGLIVNHPF--VCVEND-DGYFAGIFTRREVLKQLNKQ  140 (157)
T ss_dssp             GTCBGGGTC--BCCCCEEETTSBHHHHHHHHHHSSE--EEEECS-SSSEEEEEEHHHHHHHHHHT
T ss_pred             cCCcHHHHh--CCCCceecCCCcHHHHHHHHhhCCE--EEEEcC-CCeEEEEEEHHHHHHHHHHH
Confidence            467899999  4688999999999999999999998  999995 68999999999999877643

>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}

Probab=98.24  E-value=6e-07  Score=76.41  Aligned_cols=56  Identities=7%  Similarity=0.066  Sum_probs=49.3

Q ss_pred             CCCCCCC--CCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637          252 GNGRPCP--RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (323)
Q Consensus       252 ~~~~im~--~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~  312 (323)
                      .++++|+  ++++++.+++++.+|+.+|.+++++++||+|+  +.|   +++||||.+||+++
T Consensus        37 ~v~diM~~~~~v~~v~~~~tv~ea~~~m~~~~~~~~pVvd~--~~~---~lvGivt~~Dl~~~   94 (173)
T 3ocm_A           37 SIRSIMTPRTDVSWVNIDDDAATIRQQLTAAPHSFFPVCRG--SLD---EVVGIGRAKDLVAD   94 (173)
T ss_dssp             CSTTTSEEGGGCCCEETTSCHHHHHHHHHHSSCSEEEEESS--STT---SEEEEEEHHHHHHH
T ss_pred             CHHHhCCcHHHeEEEeCCCCHHHHHHHHHhCCCCEEEEEeC--CCC---CEEEEEEHHHHHHH
Confidence            4567896  57899999999999999999999999999985  324   79999999999987

>3c8d_A Enterochelin esterase; alpha-beta-alpha sandwich, IROD, iron aquisition, structural genomics, PSI-2, protein structure initiative; HET: CIT; 1.80A {Shigella flexneri 2a str} SCOP: b.1.18.20 c.69.1.2 PDB: 2b20_A 3c87_A* 3c8h_A 3mga_A*

Probab=98.22  E-value=3.5e-06  Score=81.20  Aligned_cols=84  Identities=21%  Similarity=0.280  Sum_probs=64.9

Q ss_pred             eeeEEEEEeeC-CC-------ceEEEE--eccC---CCCCCCCCCCCCCCCCeEEEEEEeCCceE-EEEEEEc-------
Q 020637           19 ILVPVRFIWPN-GG-------RRVSLS--GSFT---RWSEPMPMSPSEGCPAVFQIICRLPPGHH-QYKFYVD-------   77 (323)
Q Consensus        19 ~~~~v~F~w~~-~~-------~~V~l~--Gsf~---~W~~~~~m~~~~~~~g~~~~~~~LppG~y-~YkFiVD-------   77 (323)
                      ....|||.|++ .|       ++|+|.  |..+   +|. ..+|+|.++ .|+|+.++.||++.| .|.|+||       
T Consensus        29 ~~~~vtF~~~~p~a~~~~~~~~~V~~~~~~~~d~~~~~~-~~~m~r~~~-~~~W~~t~~l~~~~~~~Y~~~~~~~~~~~~  106 (403)
T 3c8d_A           29 EMFEVTFWWRDPQGSEEYSTIKRVWVYITGVTDHHQNSQ-PQSMQRIAG-TDVWQWTTQLNANWRGSYCFIPTERDDIFS  106 (403)
T ss_dssp             SEEEEEEEEECTTCSTTTCCCCEEEEEETTTC--------CCBCEECTT-SSEEEEEEEEETTCEEEEEEEEESCCSTTC
T ss_pred             CcEEEEEEeeCCCcccccCccceEEEECcCCCccccccC-ccccccCCC-CCeEEEEEEECCCcEEEEEEEecCcccccc
Confidence            35789999986 45       789998  3222   222 257998542 899999999999999 9999999       


Q ss_pred             -----------------CeeecCCCCCeeeCC-CCccceEEEecC
Q 020637           78 -----------------GEWRHDENQPHVSGN-YGVVNCVYIAVP  104 (323)
Q Consensus        78 -----------------G~w~~d~~~p~~~d~-~G~~nnvl~v~~  104 (323)
                                       |..+.||.||..... .|...|+++++.
T Consensus       107 ~~~~~~~~~r~~w~~~~~~~~~DP~n~~~~~~~~~~~~s~~~~p~  151 (403)
T 3c8d_A          107 APSPDRLELREGWRKLLPQAIADPLNPQSWKGGLGHAVSALEMPQ  151 (403)
T ss_dssp             CC--CHHHHHHHHHHHGGGCBCCTTCSSEECCSSSSCEEEEECTT
T ss_pred             cccchHHHHHHHHHHhhcccccCCCCCCCCCCCCCcccccccCCC
Confidence                             778899999977644 488889999944

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1

Probab=98.18  E-value=1.4e-06  Score=72.24  Aligned_cols=60  Identities=22%  Similarity=0.349  Sum_probs=52.8

Q ss_pred             ccccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHh
Q 020637          152 LSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRE  216 (323)
Q Consensus       152 l~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~  216 (323)
                      ....++.++|  ...++++.+++++.+|+++|.++++  +||+|+ .|+++|+||.+|+++.+..
T Consensus        83 ~~~~~v~~~m--~~~~~~v~~~~~l~~a~~~m~~~~~--lpVvd~-~g~~vGiit~~dil~~~~~  142 (159)
T 1yav_A           83 LDQITVEEVM--LTDIPRLHINDPIMKGFGMVINNGF--VCVEND-EQVFEGIFTRRVVLKELNK  142 (159)
T ss_dssp             TTTSBHHHHS--BCSCCEEETTSBHHHHHHHTTTCSE--EEEECT-TCBEEEEEEHHHHHHHHHH
T ss_pred             hccCCHHHhc--CCCCceEcCCCCHHHHHHHHHhCCE--EEEEeC-CCeEEEEEEHHHHHHHHHH
Confidence            3467889999  4688999999999999999999998  999995 6899999999999987654

>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1

Probab=98.16  E-value=2.3e-06  Score=78.72  Aligned_cols=61  Identities=15%  Similarity=0.317  Sum_probs=54.4

Q ss_pred             cccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHh
Q 020637          153 STHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRE  216 (323)
Q Consensus       153 ~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~  216 (323)
                      ...++.++|  +++++++.+++++.+|+++|.++++.++||+|+ .|+++|+||..|+++.+..
T Consensus       199 ~~~~v~~im--~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~-~g~lvGiIT~~Dil~~i~~  259 (286)
T 2oux_A          199 DDTLIADIL--NERVISVHVGDDQEDVAQTIRDYDFLAVPVTDY-DDHLLGIVTVDDIIDVIDD  259 (286)
T ss_dssp             TTSBHHHHS--BSCCCCEETTSBHHHHHHHHHHHTCSEEEEECT-TCBEEEEEEHHHHHHHHHH
T ss_pred             CCCcHHHHc--CCCCeeecCCCCHHHHHHHHHHcCCcEEEEEcC-CCeEEEEEEHHHHHHHHHH
Confidence            356788888  567899999999999999999999999999995 7899999999999987653

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}

Probab=98.15  E-value=2.2e-06  Score=70.90  Aligned_cols=61  Identities=18%  Similarity=0.215  Sum_probs=50.1

Q ss_pred             cccccccCCC----CCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhh
Q 020637          155 HTVYELLPDS----GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILREL  217 (323)
Q Consensus       155 ~~~~dvmp~s----~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~  217 (323)
                      .++.++|...    ..++++++++++.+|+++|.++++..+||+|  +|+++||||.+|+++.+...
T Consensus        84 ~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd--~g~l~Giit~~dil~~~~~~  148 (164)
T 2pfi_A           84 QCLQDILARGCPTEPVTLTLFSETTLHQAQNLFKLLNLQSLFVTS--RGRAVGCVSWVEMKKAISNL  148 (164)
T ss_dssp             CBHHHHHHTTCCCBCCCCCEETTCBHHHHHHHHHHTTCSEEEEEE--TTEEEEEEEHHHHHHHHHHH
T ss_pred             chhhhhhcccccccCCceEECCCCcHHHHHHHHHHhCCCEEEEEE--CCEEEEEEEHHHHHHHHHhh
Confidence            4455666321    1278999999999999999999999999999  47999999999999876643

>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A

Probab=98.12  E-value=2.1e-06  Score=78.40  Aligned_cols=60  Identities=20%  Similarity=0.429  Sum_probs=53.5

Q ss_pred             cccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHH
Q 020637          153 STHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR  215 (323)
Q Consensus       153 ~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~  215 (323)
                      ...++.++|  +++++++.+++++.+|+++|.++++..+||+|+ .|+++||||..|+++.+.
T Consensus       197 ~~~~v~~im--~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~lvGivT~~Dil~~i~  256 (278)
T 2yvy_A          197 PRTRVAEIM--NPKVVYVRTDTDQEEVARLMADYDFTVLPVVDE-EGRLVGIVTVDDVLDVLE  256 (278)
T ss_dssp             TTCBSTTTS--BSSCCCEETTSBHHHHHHHHHHHTCSEEEEECT-TSBEEEEEEHHHHHHHC-
T ss_pred             CCCcHHHHh--CCCCeEEeCCCCHHHHHHHHHhcCCCEEEEEeC-CCeEEEEEEHHHHHHHHH
Confidence            456889999  568999999999999999999999999999995 789999999999987554

>1ac0_A Glucoamylase; hydrolase, starch binding domain; HET: GLC BGC GLO; NMR {Aspergillus niger} SCOP: b.3.1.1 PDB: 1acz_A* 1kul_A 1kum_A

Probab=98.07  E-value=2.2e-06  Score=67.65  Aligned_cols=59  Identities=25%  Similarity=0.485  Sum_probs=47.2

Q ss_pred             CeeeEEEEEeeC---CCceEEEEecc---CCCCCC--CCCCCCCC--CCCeEEEEEEeCCce-EEEEEEE
Q 020637           18 SILVPVRFIWPN---GGRRVSLSGSF---TRWSEP--MPMSPSEG--CPAVFQIICRLPPGH-HQYKFYV   76 (323)
Q Consensus        18 ~~~~~v~F~w~~---~~~~V~l~Gsf---~~W~~~--~~m~~~~~--~~g~~~~~~~LppG~-y~YkFiV   76 (323)
                      ...+.|+|...+   .|++|+|+||.   .+|++.  ++|....-  .++.|++++.||+|. ++|||++
T Consensus         4 ~~~v~V~F~v~~~t~~Ge~v~vvGs~~~LG~W~~~~a~~l~~~~~~~~~~~W~~~v~lp~~~~~eYKy~v   73 (108)
T 1ac0_A            4 PTAVAVTFDLTATTTYGENIYLVGSISQLGDWETSDGIALSADKYTSSDPLWYVTVTLPAGESFEYKFIR   73 (108)
T ss_dssp             CCCCCEEEEEECCCCSSCCEECCCSSSTTCSSSGGGSCCBBCSSSSSSCSSCEEEECCCSSSCEECCCEE
T ss_pred             CCeEEEEEEEeeECCCCCEEEEEeCcHHHCCCCHHHCccccccccCCcCCeEEEEEEeCCCCeEEEEEEE
Confidence            346789999875   37899999985   489964  68887521  257999999999985 9999999

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*

Probab=97.97  E-value=2.7e-06  Score=84.86  Aligned_cols=56  Identities=9%  Similarity=0.102  Sum_probs=50.0

Q ss_pred             CCCCCCCCCcEEeCCC-CCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637          252 GNGRPCPRPLVQAGPY-DSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (323)
Q Consensus       252 ~~~~im~~~~vtv~pd-~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~  312 (323)
                      .+.++|+++++++.++ +++.+|+.+|.+++++++||+|+  +++   +++||||.+||+++
T Consensus       385 ~V~diM~~~~vtv~~~~~tv~ea~~~m~~~~~~~lpVvd~--~~g---~lvGiVt~~Dll~~  441 (527)
T 3pc3_A          385 AIAELELPAPPVILKSDATVGEAIALMKKHRVDQLPVVDQ--DDG---SVLGVVGQETLITQ  441 (527)
T ss_dssp             BGGGGCCCCCSCCEETTCBHHHHHHHHHHHTCSEEEEECT--TTC---CEEEEEEHHHHHHH
T ss_pred             cHHHhCcCCCeEEcCCCCcHHHHHHHHHHcCCCeEEEEEC--CCC---EEEEEEEHHHHHHH
Confidence            3567899999999999 99999999999999999999982  134   79999999999976

>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A

Probab=97.95  E-value=9.4e-06  Score=80.01  Aligned_cols=60  Identities=20%  Similarity=0.429  Sum_probs=54.4

Q ss_pred             cccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHH
Q 020637          153 STHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR  215 (323)
Q Consensus       153 ~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~  215 (323)
                      ...++.|+|  +++++++.+++++.+|+++|.++++.++||+|+ .|+++|+||..|+++.+.
T Consensus       217 ~~~~v~dim--~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVDe-~g~lvGiIT~~Dil~~i~  276 (473)
T 2zy9_A          217 PRTRVAEIM--NPKVVYVRTDTDQEEVARLMADYDFTVLPVVDE-EGRLVGIVTVDDVLDVLE  276 (473)
T ss_dssp             TTSBGGGTS--BSSCCCEESSSBHHHHHHHHHHHTCSEEEEECT-TSBEEEEEEHHHHHHHHH
T ss_pred             CCCcHHHHh--CCCCeEEeCCCcHHHHHHHHHhcCCcEEEEEcC-CCEEEEEEehHhhHHHHH
Confidence            356789999  468999999999999999999999999999995 789999999999998764

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=97.93  E-value=4.7e-06  Score=82.81  Aligned_cols=62  Identities=15%  Similarity=0.246  Sum_probs=0.0

Q ss_pred             cccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHH
Q 020637          153 STHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR  215 (323)
Q Consensus       153 ~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~  215 (323)
                      ...++.|+|....+++++.+++++.+|+++|.++++..+||+|+ .++++||||..|+++.+.
T Consensus       159 ~~~~V~diM~~~~~~~tv~~~~sl~ea~~~m~~~~i~~lpVVDe-~g~lvGiIT~~Dil~~~~  220 (503)
T 1me8_A          159 TETKVSDMMTPFSKLVTAHQDTKLSEANKIIWEKKLNALPIIDD-DQHLRYIVFRKDYDRSQV  220 (503)
T ss_dssp             ---------------------------------------------------------------
T ss_pred             ccCcHHHHhCCCCCCEEEcCCCcHHHHHHHHHHcCCCEEEEEcC-CCeEEEEEEecHHHHhhh
Confidence            34678899953334999999999999999999999999999995 789999999999976554

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=97.92  E-value=4.2e-05  Score=76.12  Aligned_cols=61  Identities=15%  Similarity=0.309  Sum_probs=53.4

Q ss_pred             ccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHh
Q 020637          154 THTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRE  216 (323)
Q Consensus       154 ~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~  216 (323)
                      ..++.++|.. .+++++..++++.+|+++|.++++..+||+|+ .|+++|+||..|+++.+.+
T Consensus       174 ~~~V~~vM~~-~~~vtv~~~~~l~eal~~m~~~~i~~lpVVDe-~g~l~GiIT~~Dil~~~~~  234 (511)
T 3usb_A          174 SIKISDVMTK-EQLITAPVGTTLSEAEKILQKYKIEKLPLVDN-NGVLQGLITIKDIEKVIEF  234 (511)
T ss_dssp             SSBHHHHCCC-CCCCCEETTCCHHHHHHHHHHHTCSEEEEECT-TSBEEEEEEHHHHHHHHHC
T ss_pred             CCcHHHhccc-CCCEEECCCCCHHHHHHHHHHcCCCEEEEEeC-CCCEeeeccHHHHHHhhhc
Confidence            4567788842 38999999999999999999999999999995 7999999999999887754

>1m7x_A 1,4-alpha-glucan branching enzyme; alpha/beta barrel, beta sandwich, transferase; 2.30A {Escherichia coli} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 3o7y_A* 3o7z_A*

Probab=97.72  E-value=0.0001  Score=74.88  Aligned_cols=68  Identities=25%  Similarity=0.540  Sum_probs=52.6

Q ss_pred             eEEEEE-eeCCCceEEEEeccCCCCC-CCCCCCCCCCCCeEEEEEE-eCCceEEEEEEE---cCee--ecCCCCCeee
Q 020637           21 VPVRFI-WPNGGRRVSLSGSFTRWSE-PMPMSPSEGCPAVFQIICR-LPPGHHQYKFYV---DGEW--RHDENQPHVS   90 (323)
Q Consensus        21 ~~v~F~-w~~~~~~V~l~Gsf~~W~~-~~~m~~~~~~~g~~~~~~~-LppG~y~YkFiV---DG~w--~~d~~~p~~~   90 (323)
                      -.|+|+ |.+.|++|.|+|+|++|.. .++|++.. ..|+|+++++ +++|.+ |+|.|   ||.+  ..||......
T Consensus        25 ~gv~F~vwAP~A~~V~L~gdfn~~~~~~~~M~~~~-~~GvW~~~v~~~~~g~~-Y~f~i~~~~g~~~~~~DPya~~~~  100 (617)
T 1m7x_A           25 TGTRFSVWAPNARRVSVVGQFNYWDGRRHPMRLRK-ESGIWELFIPGAHNGQL-YKYEMIDANGNLRLKSDPYAFEAQ  100 (617)
T ss_dssp             EEEEEEEECSSCSCEEEEEGGGTSCTTTCBCCCCT-TTTEEEEEEETCCTTCE-EEEEEECTTSCEEEECCTTCSSEE
T ss_pred             CcEEEEEECCCCCEEEEEEEeCCCCCceeEeEECC-CCCEEEEEEcCCCCCCE-EEEEEEcCCCcEEEecCccceeec
Confidence            467886 5678999999999999975 36998732 3799999998 778874 99998   6764  6787766544

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}

Probab=97.71  E-value=2.4e-05  Score=79.76  Aligned_cols=53  Identities=13%  Similarity=0.151  Sum_probs=47.3

Q ss_pred             ccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHH
Q 020637          156 TVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL  212 (323)
Q Consensus       156 ~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~  212 (323)
                      ++.|+|  +++++++++++++.+|+++|.+++++.+||+|  +|+++||||.+|+++
T Consensus       569 ~v~~iM--t~~pitV~~~~~l~ea~~~M~~~~i~~lpVve--~G~lvGIVT~~Dll~  621 (632)
T 3org_A          569 SLVVPC--DVSPIVVTSYSLVRQLHFLFVMLMPSMIYVTE--RGKLVGIVEREDVAY  621 (632)
T ss_dssp             --CCSC--CCCCCEEETTCBHHHHHHHHHHTCCSEEEEEE--TTEEEEEEEGGGTEE
T ss_pred             ccchhh--cCCCceecCCCcHHHHHHHHHhcCCCEEEEEE--CCEEEEEEehhhHHH
Confidence            478899  68899999999999999999999999999994  589999999999853

>3aml_A OS06G0726400 protein; starch-branching, transferase; HET: EPE; 1.70A {Oryza sativa japonica group} PDB: 3amk_A

Probab=97.59  E-value=9.5e-05  Score=76.82  Aligned_cols=64  Identities=19%  Similarity=0.417  Sum_probs=49.9

Q ss_pred             EEEEE-eeCCCceEEEEeccCCCCCC-CCCCCCCCCCCeEEEEEE-------eCCceEEEEEEEcC---ee--ecCCCCC
Q 020637           22 PVRFI-WPNGGRRVSLSGSFTRWSEP-MPMSPSEGCPAVFQIICR-------LPPGHHQYKFYVDG---EW--RHDENQP   87 (323)
Q Consensus        22 ~v~F~-w~~~~~~V~l~Gsf~~W~~~-~~m~~~~~~~g~~~~~~~-------LppG~y~YkFiVDG---~w--~~d~~~p   87 (323)
                      -++|+ |.+.|++|.|+|+||+|... ++|++..  .|+|++.++       +++|.+ |||.|+|   .|  +.||...
T Consensus        66 gv~F~vwAP~A~~V~l~gdfn~w~~~~~~m~~~~--~GvW~~~v~~~~g~~~i~~g~~-Y~y~i~~~~g~~~~~~dpya~  142 (755)
T 3aml_A           66 ATIYREWAPAAQEAQLIGEFNNWNGAKHKMEKDK--FGIWSIKISHVNGKPAIPHNSK-VKFRFRHGGGAWVDRIPAWIR  142 (755)
T ss_dssp             EEEEEEECTTCSEEEEEEGGGTTCCTTCBCEECT--TSEEEEEEECBTTBCSSCTTEE-EEEEEECTTCCCEEECCTTCS
T ss_pred             eEEEEEECCCCCEEEEEEecCCCCCceeeceeCC--CCEEEEEEcccccccCCCCCCE-EEEEEECCCCcEEecCCcchh
Confidence            47786 67889999999999999864 7998754  799999998       678874 8888864   55  4577554


Q ss_pred             e
Q 020637           88 H   88 (323)
Q Consensus        88 ~   88 (323)
                      .
T Consensus       143 ~  143 (755)
T 3aml_A          143 Y  143 (755)
T ss_dssp             C
T ss_pred             e
Confidence            3

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=97.55  E-value=0.0001  Score=72.68  Aligned_cols=60  Identities=20%  Similarity=0.368  Sum_probs=53.5

Q ss_pred             ccccccccCCCC-CeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHh
Q 020637          154 THTVYELLPDSG-KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRE  216 (323)
Q Consensus       154 ~~~~~dvmp~s~-~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~  216 (323)
                      ..++.++|  +. +++++.+++++.+|+++|.+++++.+||+|+ .++++|++|..|+++.+..
T Consensus       151 ~~~v~~im--~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~-~g~lvGivt~~Dil~~~~~  211 (491)
T 1zfj_A          151 NAPISEHM--TSEHLVTAAVGTDLETAERILHEHRIEKLPLVDN-SGRLSGLITIKDIEKVIEF  211 (491)
T ss_dssp             SSBTTTSC--CCSCCCCEETTCCHHHHHHHHHHTTCSEEEEECT-TSBEEEEEEHHHHHHHHHC
T ss_pred             CCcHHHHc--CCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcC-CCcEEEEEEHHHHHHHHhc
Confidence            45678888  34 7899999999999999999999999999995 7999999999999987763

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=97.35  E-value=0.00011  Score=72.87  Aligned_cols=52  Identities=13%  Similarity=0.141  Sum_probs=45.5

Q ss_pred             CCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637          255 RPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (323)
Q Consensus       255 ~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~  312 (323)
                      .+|.++++++.|++++.+|..+|.++++.++||+|+   ++   +|+||||.+|++..
T Consensus        93 ~~m~~d~v~v~~~~tv~ea~~~m~~~~~s~~PVvd~---~~---~lvGiVt~rDL~~~  144 (496)
T 4fxs_A           93 AGVVTHPVTVRPEQTIADVMELTHYHGFAGFPVVTE---NN---ELVGIITGRDVRFV  144 (496)
T ss_dssp             C--CBCCCCBCSSSBHHHHHHHHTSSCCCEEEEECS---SS---BEEEEEEHHHHTTC
T ss_pred             cccccCceEECCCCCHHHHHHHHHHcCCcEEEEEcc---CC---EEEEEEEHHHHhhc
Confidence            368999999999999999999999999999999985   34   89999999999743

>3k1d_A 1,4-alpha-glucan-branching enzyme; mycobacterium tuberculosis H37RV, mesophilic human pathogen, RV1326C gene, glycosyl transferase; 2.33A {Mycobacterium tuberculosis}

Probab=97.31  E-value=0.00029  Score=72.80  Aligned_cols=69  Identities=29%  Similarity=0.420  Sum_probs=52.1

Q ss_pred             eeEEEEEe-eCCCceEEEEeccCCCCCC-CCCCCCCCCCCeEEEEEE-eCCceEEEEEEE---cCee--ecCCCCCeee
Q 020637           20 LVPVRFIW-PNGGRRVSLSGSFTRWSEP-MPMSPSEGCPAVFQIICR-LPPGHHQYKFYV---DGEW--RHDENQPHVS   90 (323)
Q Consensus        20 ~~~v~F~w-~~~~~~V~l~Gsf~~W~~~-~~m~~~~~~~g~~~~~~~-LppG~y~YkFiV---DG~w--~~d~~~p~~~   90 (323)
                      ..-++|+. .+.|++|.|+|+||+|+.. .+|++.. ..|+|++.++ +.+|. .|||.|   ||.+  +.||......
T Consensus       135 ~~g~~F~vwAP~A~~V~l~gdfn~w~~~~~~m~~~~-~~GvW~~~i~~~~~g~-~Y~y~i~~~~g~~~~~~DPya~~~~  211 (722)
T 3k1d_A          135 VSGVSFAVWAPNAKGVSLIGEFNGWNGHEAPMRVLG-PSGVWELFWPDFPCDG-LYKFRVHGADGVVTDRADPFAFGTE  211 (722)
T ss_dssp             EEEEEEEEECTTCSEEEEEEGGGTTCCCSCBCEECG-GGCEEEEEEETCCTTC-EEEEEEECTTSCEEEECCTTCSSBC
T ss_pred             CceEEEEEECCCCCEEEEEeecCCCCCCcccCEEcC-CCCEEEEEeCCCCCCC-EEEEEEEcCCCcEEEeecccceeec
Confidence            33567765 6789999999999999864 6998753 2599999997 88885 588888   5654  6788765543

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*

Probab=97.29  E-value=3.7e-05  Score=76.10  Aligned_cols=59  Identities=15%  Similarity=0.263  Sum_probs=0.0

Q ss_pred             ccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHH
Q 020637          154 THTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR  215 (323)
Q Consensus       154 ~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~  215 (323)
                      ...+.++|.  .++|++..+.++.+|.++|.+|++..|||+|+ +++++|+||..|+++...
T Consensus       199 ~~~V~evMT--~~lvt~~~~~~leeA~~iL~~~kieklpVVd~-~g~LvGlIT~kDi~k~~~  257 (556)
T 4af0_A          199 ETPIKSVMT--TEVVTGSSPITLEKANSLLRETKKGKLPIVDS-NGHLVSLVARSDLLKNQN  257 (556)
T ss_dssp             --------------------------------------------------------------
T ss_pred             ceEhhhhcc--cceEEecCCCCHHHHHHHHHHccccceeEEcc-CCcEEEEEEechhhhhhh
Confidence            456889995  67999999999999999999999999999995 799999999999986543

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=97.22  E-value=5e-05  Score=75.05  Aligned_cols=62  Identities=15%  Similarity=0.394  Sum_probs=5.0

Q ss_pred             ccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHh
Q 020637          154 THTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRE  216 (323)
Q Consensus       154 ~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~  216 (323)
                      ..++.++|....+++++.+++++.+|+++|.++++..+||+|+ +++++|+||..|+++.+..
T Consensus       154 ~~~v~~im~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~-~g~lvGiIt~~Dll~~~~~  215 (494)
T 1vrd_A          154 SKKIKDLMTPREKLIVAPPDISLEKAKEILHQHRIEKLPLVSK-DNKLVGLITIKDIMSVIEH  215 (494)
T ss_dssp             --------------------------------------------------------CHHHHTC
T ss_pred             CCcHHHHhCCCCCCeEECCCCCHHHHHHHHHHcCCcEEEEEcC-CCeEEEEEEHHHHHhhhcc
Confidence            4678889942228999999999999999999999999999995 7899999999999987653

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=97.19  E-value=5e-05  Score=75.16  Aligned_cols=62  Identities=15%  Similarity=0.162  Sum_probs=0.0

Q ss_pred             cccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHH
Q 020637          153 STHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR  215 (323)
Q Consensus       153 ~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~  215 (323)
                      ...++.++|....+++++..++++.+|+++|.++++..+||+|+ .|+++|+||..|+++...
T Consensus       145 ~~~~V~~vMtp~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe-~g~lvGiIT~~Dil~~~~  206 (490)
T 4avf_A          145 AGDTVAAIMTPKDKLVTAREGTPLEEMKAKLYENRIEKMLVVDE-NFYLRGLVTFRDIEKAKT  206 (490)
T ss_dssp             ---------------------------------------------------------------
T ss_pred             cCCcHHHHhccCCCCEEECCCCcHHHHHHHHHHcCCCEEEEEcC-CCcEEEEEehHHhhhhcc
Confidence            35678899931126999999999999999999999999999995 799999999999987654

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=96.98  E-value=0.00012  Score=72.59  Aligned_cols=56  Identities=13%  Similarity=0.134  Sum_probs=26.5

Q ss_pred             CCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637          254 GRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (323)
Q Consensus       254 ~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~  312 (323)
                      .++|.++++++.+++++.+|+.+|.+++++++||+|+...++   +++||||.+|+.+.
T Consensus       111 ~~im~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~---~lvGiVt~~Dl~~~  166 (514)
T 1jcn_A          111 EQGFITDPVVLSPSHTVGDVLEAKMRHGFSGIPITETGTMGS---KLVGIVTSRDIDFL  166 (514)
T ss_dssp             CTTSCSSCCCCCC-----------------CEESCC-----------CCEECTTTTC--
T ss_pred             hhccccCCEEECCCCCHHHHHHHHHhcCCCEEEEEeCCCcCC---EEEEEEEHHHHHhh
Confidence            347888999999999999999999999999999998410024   89999999999763

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1

Probab=96.96  E-value=0.00012  Score=72.22  Aligned_cols=59  Identities=22%  Similarity=0.499  Sum_probs=0.4

Q ss_pred             ccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHH
Q 020637          154 THTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR  215 (323)
Q Consensus       154 ~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~  215 (323)
                      ..++.++|  .++++++.+++++.+|+++|.++++..+||+|+ .++++|+||..|+++.+.
T Consensus       149 ~~~v~~im--~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVde-~g~lvGiiT~~Dil~~~~  207 (486)
T 2cu0_A          149 GKLVKELM--TKEVITVPESIEVEEALKIMIENRIDRLPVVDE-RGKLVGLITMSDLVARKK  207 (486)
T ss_dssp             -------------------------------------------------------------C
T ss_pred             CCCHHHHc--cCCCeEECCcCcHHHHHHHHHHcCCCEEEEEec-CCeEEEEEEHHHHHHhhh
Confidence            45677888  457899999999999999999999999999995 789999999999987654

>2laa_A Beta/alpha-amylase; SBD, CBM25, hydrolase; NMR {Paenibacillus polymyxa} PDB: 2lab_A

Probab=96.74  E-value=0.0047  Score=48.11  Aligned_cols=65  Identities=15%  Similarity=0.312  Sum_probs=48.7

Q ss_pred             eEEEEEeeCCCceEEEEeccC--CCCCC--CCCCCCCCCCCeEEEEEEeCCc-eEEEEEEEcC--eeecCCCCC
Q 020637           21 VPVRFIWPNGGRRVSLSGSFT--RWSEP--MPMSPSEGCPAVFQIICRLPPG-HHQYKFYVDG--EWRHDENQP   87 (323)
Q Consensus        21 ~~v~F~w~~~~~~V~l~Gsf~--~W~~~--~~m~~~~~~~g~~~~~~~LppG-~y~YkFiVDG--~w~~d~~~p   87 (323)
                      ..+++.|..++++|+|...+.  +|...  .+|.+.. ..+.++.+++||.| .++|+|. ||  .|-.+...-
T Consensus         5 ~~vtiyY~~g~~~vylHyg~~~g~Wt~~~~v~M~~~~-~~gw~~~TI~l~~g~~~~~~F~-dG~~~WDNn~g~N   76 (104)
T 2laa_A            5 NKVTIYYKKGFNSPYIHYRPAGGSWTAAPGVKMQDAE-ISGYAKITVDIGSASQLEAAFN-DGNNNWDSNNTKN   76 (104)
T ss_dssp             CEEEEEEECSSSSCEEEEEETTSCCCSSSCEECEEET-TTTEEEEEEECTTCSCEEEEEE-CSSSCEESTTTSC
T ss_pred             CEEEEEEcCCCCcEEEEEcCCCCCCCcCCcccccccc-CCCeEEEEEECCCCCEEEEEEe-CCCCcCcCCCCcc
Confidence            467888888899999998885  89874  4787653 23433699999975 6999995 87  488766543

>1qho_A Alpha-amylase; glycoside hydrolase, starch degradation; HET: MAL ABD; 1.70A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1qhp_A*

Probab=96.71  E-value=0.0048  Score=63.28  Aligned_cols=58  Identities=22%  Similarity=0.505  Sum_probs=47.3

Q ss_pred             CCeeeEEEEEeeC-----CCceEEEEeccC---CCCC--------CC-CCCCCCCCCCeEEEEEEeCCce-EEEEEEE
Q 020637           17 GSILVPVRFIWPN-----GGRRVSLSGSFT---RWSE--------PM-PMSPSEGCPAVFQIICRLPPGH-HQYKFYV   76 (323)
Q Consensus        17 ~~~~~~v~F~w~~-----~~~~V~l~Gsf~---~W~~--------~~-~m~~~~~~~g~~~~~~~LppG~-y~YkFiV   76 (323)
                      ....+.|+|+..+     -|++|+|+||-.   +|++        .+ +|...+  ...|++++.||+|. +||||++
T Consensus       578 ~~~~v~v~F~v~~~~t~~~G~~l~v~G~~~~LG~W~~~~~~~~~~a~~~l~~~~--~~~W~~~v~l~~~~~~eyKy~~  653 (686)
T 1qho_A          578 SGTQTSVVFTVKSAPPTNLGDKIYLTGNIPELGNWSTDTSGAVNNAQGPLLAPN--YPDWFYVFSVPAGKTIQFKFFI  653 (686)
T ss_dssp             SSSEEEEEEEEESCCCCCTTCEEEEEESSGGGTTTCCCCSSCSSCCBCCCBCTT--TTSEEEEEEEETTCEEEEEEEE
T ss_pred             CCCeEEEEEEEecccCCCCCCEEEEEeChHHhCCCCCccccchhhhhcccccCC--CCcEEEEEEeCCCCeEEEEEEE
Confidence            4467889999975     378999999976   7988        34 777644  67999999999985 9999998

>1cyg_A Cyclodextrin glucanotransferase; glycosyltransferase; 2.50A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1

Probab=96.40  E-value=0.0085  Score=61.36  Aligned_cols=58  Identities=26%  Similarity=0.463  Sum_probs=47.5

Q ss_pred             CCeeeEEEEEeeC----CCceEEEEeccC---CCCCC--C-CCCC---CCCCCCeEEEEEEeCCc-eEEEEEEE
Q 020637           17 GSILVPVRFIWPN----GGRRVSLSGSFT---RWSEP--M-PMSP---SEGCPAVFQIICRLPPG-HHQYKFYV   76 (323)
Q Consensus        17 ~~~~~~v~F~w~~----~~~~V~l~Gsf~---~W~~~--~-~m~~---~~~~~g~~~~~~~LppG-~y~YkFiV   76 (323)
                      +...++|+|+...    .++.|+|+||-.   +|++.  + +|..   ..  ...|++++.||+| .+||||++
T Consensus       576 ~~~~v~v~f~v~~~~~~~ge~v~v~G~~~~LG~W~~~~a~~~l~~~~~~~--~~~W~~~v~lp~~~~~eyK~v~  647 (680)
T 1cyg_A          576 TNDQVSVRFVVNNATTNLGQNIYIVGNVYELGNWDTSKAIGPMFNQVVYS--YPTWYIDVSVPEGKTIEFKFIK  647 (680)
T ss_dssp             SSCEEEEEEEEESCCCCSSCEEEEEESSGGGBTTCGGGCBCCCBCSSSSC--TTCEEEEEEEESSCEEEEEEEE
T ss_pred             CCCeEEEEEEEeeccCCCCCEEEEEeCcHHhCCCChhhhhhhhccccCCC--CCcEEEEEEeCCCCcEEEEEEE
Confidence            3467899999975    378999999876   89874  5 7776   33  6799999999988 59999998

>2vn4_A Glucoamylase; hydrolase, carbohydrate binding, glycoside hydrolase family 15, amyloglucosidase; HET: MAN NAG BTB; 1.85A {Hypocrea jecorina} PDB: 2vn7_A*

Probab=96.36  E-value=0.014  Score=59.05  Aligned_cols=59  Identities=20%  Similarity=0.328  Sum_probs=46.9

Q ss_pred             CeeeEEEEEeeC---CCceEEEEeccC---CCCCC--CCCCCCC--CCCCeEEEEEEeCCce-EEEEEEE
Q 020637           18 SILVPVRFIWPN---GGRRVSLSGSFT---RWSEP--MPMSPSE--GCPAVFQIICRLPPGH-HQYKFYV   76 (323)
Q Consensus        18 ~~~~~v~F~w~~---~~~~V~l~Gsf~---~W~~~--~~m~~~~--~~~g~~~~~~~LppG~-y~YkFiV   76 (323)
                      ...+.|+|...+   -|++|+|+|+-.   +|++.  ++|...+  .++..|++++.||+|. ++|||+|
T Consensus       494 ~~~v~v~F~v~~~t~~Ge~l~vvGs~~~LG~W~~~~a~~L~~~~~t~~~~~W~~~v~lp~~~~~eYKyvv  563 (599)
T 2vn4_A          494 PTSVAVTFHELVSTQFGQTVKVAGNAAALGNWSTSAAVALDAVNYADNHPLWIGTVNLEAGDVVEYKYIN  563 (599)
T ss_dssp             CSEEEEEEEEECCCCTTCEEEEEESSGGGTTTCTTTSEECBCTTCBTTBCEEEEEEEEETTCEEEEEEEE
T ss_pred             CCeEEEEEEEeEEcCCCCEEEEEecccCCCCcChhheeecccccCCCCCCcEEEEEEcCCCCcEEEEEEE
Confidence            445889999975   489999999875   89874  5787653  0137999999999985 9999998

>1bf2_A Isoamylase; hydrolase, glycosidase, debranching enzyme; 2.00A {Pseudomonas amyloderamosa} SCOP: b.1.18.2 b.71.1.1 c.1.8.1

Probab=96.30  E-value=0.0027  Score=65.86  Aligned_cols=54  Identities=17%  Similarity=0.308  Sum_probs=43.7

Q ss_pred             EEEE-eeCCCceEEEEeccCCCCC-----CCCCCCCCCCCCeEEEEEE-eC------CceEEEEEEEcCe
Q 020637           23 VRFI-WPNGGRRVSLSGSFTRWSE-----PMPMSPSEGCPAVFQIICR-LP------PGHHQYKFYVDGE   79 (323)
Q Consensus        23 v~F~-w~~~~~~V~l~Gsf~~W~~-----~~~m~~~~~~~g~~~~~~~-Lp------pG~y~YkFiVDG~   79 (323)
                      |+|+ |.+.|++|.|++ |++|..     .++|.+..  .|+|++.++ +.      +|.|.|+|.|+|.
T Consensus        18 ~~F~vwap~A~~V~l~l-~~~~~~~~~~~~~~m~~~~--~gvW~~~v~~~~~~~~~~~g~y~Y~y~v~g~   84 (750)
T 1bf2_A           18 ITFRVYSSQATRIVLYL-YSAGYGVQESATYTLSPAG--SGVWAVTVPVSSIKAAGITGAVYYGYRAWGP   84 (750)
T ss_dssp             EEEEEECSSCSEEEEEE-ESSSSSCCCSEEEECEECS--TTEEEEEEEHHHHHHTTCCSCCEEEEEEEBT
T ss_pred             EEEEEECCCCCEEEEEE-EccCCCCccceEEecccCC--CCEEEEEECCcccccccCCCCEEEEEEEEee
Confidence            7776 567899999998 887653     35788754  699999987 66      8999999999975

>1wzl_A Alpha-amylase II; pullulan, GH-13, alpha-amylase family, hydrolase; 2.00A {Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1ji2_A 1bvz_A 1vfk_A* 3a6o_A* 1wzm_A 1jf6_A 1wzk_A 2d2o_A* 1jib_A* 1jl8_A* 1vb9_A* 1g1y_A* 1vfo_A* 1vfm_A* 1vfu_A* 1jf5_A

Probab=96.26  E-value=0.0036  Score=62.91  Aligned_cols=61  Identities=11%  Similarity=0.049  Sum_probs=46.7

Q ss_pred             CCeeeEEEEE-eeCCCceEEE-EeccCCCCC----CCCCCCCC--CCCCeEEEEEEeCCceEEEEEEEc
Q 020637           17 GSILVPVRFI-WPNGGRRVSL-SGSFTRWSE----PMPMSPSE--GCPAVFQIICRLPPGHHQYKFYVD   77 (323)
Q Consensus        17 ~~~~~~v~F~-w~~~~~~V~l-~Gsf~~W~~----~~~m~~~~--~~~g~~~~~~~LppG~y~YkFiVD   77 (323)
                      ....+.++|+ |.+.+++|.| .|+|++|+.    .++|++..  +..|+|++.++.....+.|||.|.
T Consensus        19 ~~~~~~i~~~~~~~~a~~V~l~~~d~~~~~~~~~~~~~m~~~~~~~~~~~w~~~i~~~~~~~~Y~f~i~   87 (585)
T 1wzl_A           19 SETQLRVRLRAKKGDVVRCEVLYADRYASPEEELAHALAGKAGSDERFDYFEALLECSTKRVKYVFLLT   87 (585)
T ss_dssp             ETTEEEEEEEEETTTCSEEEEEEECTTCCTTSCCEEEECEEEEECSSEEEEEEEEECTTSCEEEEEEEE
T ss_pred             CCCEEEEEEEECCCCccEEEEEECCCcCCCCCceEEEEEEEeecCCCEEEEEEEEECCCCeEEEEEEEE
Confidence            3456677775 4568999999 799999975    36898753  224579999998877899999984

>2bhu_A Maltooligosyltrehalose trehalohydrolase; alpha-amylase, protein-carbohydrate complex, desiccation resistance; HET: TRS PGE; 1.1A {Deinococcus radiodurans} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 2bhy_A* 2bhz_A* 2bxy_A* 2bxz_A* 2by0_A* 2by1_A* 2by2_A* 2by3_A*

Probab=96.17  E-value=0.0041  Score=62.86  Aligned_cols=62  Identities=21%  Similarity=0.362  Sum_probs=49.2

Q ss_pred             EEEEE-eeCCCceEEEEeccCCCCCCCCCCCCCCCCCeEEEEEEeCCceEEEEEEEcCeeecCCCCCeee
Q 020637           22 PVRFI-WPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWRHDENQPHVS   90 (323)
Q Consensus        22 ~v~F~-w~~~~~~V~l~Gsf~~W~~~~~m~~~~~~~g~~~~~~~LppG~y~YkFiVDG~w~~d~~~p~~~   90 (323)
                      .++|+ |.+.|++|.|+|+   . ..++|++.+  .|+|++.+++.+|.+ |+|.|||..+.||......
T Consensus        35 ~~~f~vwap~a~~v~l~~~---~-~~~~m~~~~--~g~w~~~~~~~~g~~-Y~~~v~g~~~~DPya~~~~   97 (602)
T 2bhu_A           35 GTRFRLWTSTARTVAVRVN---G-TEHVMTSLG--GGIYELELPVGPGAR-YLFVLDGVPTPDPYARFLP   97 (602)
T ss_dssp             CEEEEEECSSCSSEEEEET---T-EEEECEEEE--TTEEEEEESCCTTCE-EEEEETTEEECCTTCSCCT
T ss_pred             eEEEEEECCCCCEEEEEEc---C-CEEeCeeCC--CcEEEEEEECCCCcE-EEEEECCeEecCCCccccC
Confidence            57776 5678999999994   2 357998865  689999999888886 9999999767888766543

>2wsk_A Glycogen debranching enzyme; carbohydrate metabolism, hydrolase, glycosidase, ISO-amylase glycosyl hydrolase, glycogen metabolism; 2.25A {Escherichia coli k-12}

Probab=96.12  E-value=0.0057  Score=62.49  Aligned_cols=54  Identities=20%  Similarity=0.330  Sum_probs=42.9

Q ss_pred             EEEEE-eeCCCceEEEEeccCCCC--CCCCCCCCCCCCCeEEEEEE-eCCceEEEEEEEcCe
Q 020637           22 PVRFI-WPNGGRRVSLSGSFTRWS--EPMPMSPSEGCPAVFQIICR-LPPGHHQYKFYVDGE   79 (323)
Q Consensus        22 ~v~F~-w~~~~~~V~l~Gsf~~W~--~~~~m~~~~~~~g~~~~~~~-LppG~y~YkFiVDG~   79 (323)
                      -++|+ |.+.|++|.|++ |+++.  ..++|.+..  .|+|.+.++ +.+|.+ |+|.|+|.
T Consensus        20 g~~F~vwap~A~~V~l~~-f~~~~~~~~~~m~~~~--~g~w~~~v~~~~~g~~-Y~y~v~~~   77 (657)
T 2wsk_A           20 GVNFTLFSAHAERVELCV-FDANGQEHRYDLPGHS--GDIWHGYLPDARPGLR-YGYRVHGP   77 (657)
T ss_dssp             EEEEEEECSSCSEEEEEE-ECTTCCEEEEECCEEE--TTEEEEEEETCCTTCE-EEEEEECC
T ss_pred             eEEEEEECCCCCEEEEEE-ECCCCCEEEEeCcCCC--CCEEEEEECCCCCCCE-EEEEEeee
Confidence            47786 567899999999 88764  247898654  699999986 788876 99999983

>3bmv_A Cyclomaltodextrin glucanotransferase; glycosidase, thermostable, family 13 glycosyl hydrolas; 1.60A {Thermoanaerobacterium thermosulfurigenorganism_taxid} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 3bmw_A* 1ciu_A 1a47_A 1pj9_A* 1cgt_A

Probab=96.09  E-value=0.01  Score=60.72  Aligned_cols=57  Identities=28%  Similarity=0.484  Sum_probs=47.2

Q ss_pred             CeeeEEEEEeeC----CCceEEEEeccC---CCCCC--C-CCCC---CCCCCCeEEEEEEeCCc-eEEEEEEE
Q 020637           18 SILVPVRFIWPN----GGRRVSLSGSFT---RWSEP--M-PMSP---SEGCPAVFQIICRLPPG-HHQYKFYV   76 (323)
Q Consensus        18 ~~~~~v~F~w~~----~~~~V~l~Gsf~---~W~~~--~-~m~~---~~~~~g~~~~~~~LppG-~y~YkFiV   76 (323)
                      ...++|+|+...    .++.|+|+||-.   +|++.  + +|..   ..  ...|++++.||+| .+||||++
T Consensus       581 ~~~v~v~f~v~~~~~~~g~~v~v~G~~~~LG~W~~~~a~~~l~~~~~~~--~~~W~~~v~lp~~~~~eyK~~~  651 (683)
T 3bmv_A          581 GNQICVRFVVNNASTVYGENVYLTGNVAELGNWDTSKAIGPMFNQVVYQ--YPTWYYDVSVPAGTTIQFKFIK  651 (683)
T ss_dssp             SSEEEEEEEEESCCCCTTCEEEEEESSGGGTTTCGGGCBCSCBCSSSSC--TTSEEEEEEEETTCEEEEEEEE
T ss_pred             CCeEEEEEEEEeccCCCCCEEEEEeCcHHhCCCChhhhhhhhcccCCCC--CCcEEEEEEeCCCCcEEEEEEE
Confidence            457899999975    379999999987   89863  5 7876   33  6799999999998 59999997

>2vr5_A Glycogen operon protein GLGX; hydrolase, glycosidase, glycosyl hydrolase, glycogen debraching; HET: GLC A16; 2.8A {Sulfolobus solfataricus} PDB: 2vnc_A* 2vuy_A

Probab=95.97  E-value=0.008  Score=62.03  Aligned_cols=55  Identities=18%  Similarity=0.415  Sum_probs=43.0

Q ss_pred             EEEEE-eeCCCceEEEEeccCCCCC-----CCCCCCCCCCCCeEEEEEE-eCCceEEEEEEEcCee
Q 020637           22 PVRFI-WPNGGRRVSLSGSFTRWSE-----PMPMSPSEGCPAVFQIICR-LPPGHHQYKFYVDGEW   80 (323)
Q Consensus        22 ~v~F~-w~~~~~~V~l~Gsf~~W~~-----~~~m~~~~~~~g~~~~~~~-LppG~y~YkFiVDG~w   80 (323)
                      -++|+ |.+.|++|.|++ |+++..     .++|.+..  .|+|.+.++ +.+|.+ |+|.|+|.|
T Consensus        30 g~~F~vwap~A~~V~l~l-f~~~~~~~~~~~~~m~~~~--~gvw~~~v~~~~~g~~-Y~y~v~g~~   91 (718)
T 2vr5_A           30 GVNFSLFSENAEKVELLL-YSLTNQKYPKEIIEVKNKT--GDIWHVFVPGLRPGQL-YAYRVYGPY   91 (718)
T ss_dssp             EEEEEEECSSCSEEEEEE-CCSSCCSSCSEEEEECEES--SSEEEEEEETCCTTCE-EEEEEECCE
T ss_pred             eEEEEEECCCCCEEEEEE-EcCCCCCCcceEEeCccCC--CCEEEEEeCCCCCCCE-EEEEEeeec
Confidence            57787 567899999999 876431     36888754  699999986 788987 999999853

>1d3c_A Cyclodextrin glycosyltransferase; alpha-amylase, product complex, oligosaccharide, family 13 glycosyl hydrolase, transglycosylation; HET: GLC; 1.78A {Bacillus circulans} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1cxf_A* 1cxk_A* 1cdg_A* 1cxe_A* 1cxh_A* 1cxi_A* 2cxg_A* 1cgv_A* 2dij_A* 1cgy_A* 1kck_A* 1cgx_A* 1cxl_A* 1cgw_A* 1tcm_A 1kcl_A* 1eo5_A* 1eo7_A* 1dtu_A* 1ot1_A* ...

Probab=95.93  E-value=0.014  Score=59.80  Aligned_cols=58  Identities=29%  Similarity=0.498  Sum_probs=47.3

Q ss_pred             CCeeeEEEEEeeC----CCceEEEEeccC---CCCCC--C-CCCC---CCCCCCeEEEEEEeCCc-eEEEEEEE
Q 020637           17 GSILVPVRFIWPN----GGRRVSLSGSFT---RWSEP--M-PMSP---SEGCPAVFQIICRLPPG-HHQYKFYV   76 (323)
Q Consensus        17 ~~~~~~v~F~w~~----~~~~V~l~Gsf~---~W~~~--~-~m~~---~~~~~g~~~~~~~LppG-~y~YkFiV   76 (323)
                      ....++|+|+...    .|+.|+|+||-.   +|++.  + +|..   ..  ...|++++.||+| .+||||++
T Consensus       583 ~~~~v~v~f~v~~~~~~~g~~~~v~G~~~~LG~W~~~~a~~~l~~~~~~~--~~~W~~~v~lp~~~~~eyK~~~  654 (686)
T 1d3c_A          583 SGDQVSVRFVVNNATTALGQNVYLTGSVSELGNWDPAKAIGPMYNQVVYQ--YPNWYYDVSVPAGKTIEFKFLK  654 (686)
T ss_dssp             SSSEEEEEEEEECCCCCTTCEEEEEESSGGGTTTCGGGCBCCCBCSSSSC--TTCEEEEEEEETTCEEEEEEEE
T ss_pred             CCCeEEEEEEEeeccCCCCCEEEEEeCcHHhCCCChhhhhhhhccccCCC--CCeEEEEEEeCCCCcEEEEEEE
Confidence            3467899999965    378999999876   89874  5 6775   33  6799999999998 59999997

>3vgf_A Malto-oligosyltrehalose trehalohydrolase; alpha/beta barrel, alpha-amylas hydrolase; HET: GLC FLC; 2.30A {Sulfolobus solfataricus} PDB: 3vge_A* 3vgd_A* 3vgb_A* 1eh9_A* 3vgh_A* 3vgg_A* 1eha_A

Probab=95.89  E-value=0.0041  Score=62.28  Aligned_cols=62  Identities=19%  Similarity=0.147  Sum_probs=50.1

Q ss_pred             EEEEEe-eCCCceEEEEeccCCCCCCCCCCCCCCCCCeEEEEEE-eCCceEEEEEEEcCe-eecCCCCCee
Q 020637           22 PVRFIW-PNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICR-LPPGHHQYKFYVDGE-WRHDENQPHV   89 (323)
Q Consensus        22 ~v~F~w-~~~~~~V~l~Gsf~~W~~~~~m~~~~~~~g~~~~~~~-LppG~y~YkFiVDG~-w~~d~~~p~~   89 (323)
                      -++|+. .+.|++|.|++.|+   ..++|.+.+  .|+|++.++ +.+|. .|+|.|||. ...||.....
T Consensus        10 ~~~f~vwap~a~~v~l~~~~~---~~~~m~~~~--~g~w~~~~~~~~~g~-~Y~~~~~~~~~~~DP~~~~~   74 (558)
T 3vgf_A           10 EVIFTLWAPYQKSVKLKVLEK---GLYEMERDE--KGYFTITLNNVKVRD-RYKYVLDDASEIPDPASRYQ   74 (558)
T ss_dssp             EEEEEEECTTCSCCEEEETTT---EEEECEECT--TCEEEEEESSCCTTC-EEEEECTTSCEECCTTCSCC
T ss_pred             cEEEEEECCCCCEEEEEEecC---ceeecccCC--CCEEEEEECCCCCCC-EEEEEEeCCccccCcchhhc
Confidence            466765 67899999999987   457999865  699999997 88885 699999996 7888876543

>1j0h_A Neopullulanase; beta-alpha-barrels, hydrolase; 1.90A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1j0i_A* 1j0j_A* 1j0k_A* 1sma_A 1gvi_A*

Probab=95.80  E-value=0.0047  Score=62.13  Aligned_cols=61  Identities=21%  Similarity=0.255  Sum_probs=47.2

Q ss_pred             CCeeeEEEEE-eeCCCceEEE-EeccCCCCC------CCCCCCCC--CCCCeEEEEEEeCCceEEEEEEEc
Q 020637           17 GSILVPVRFI-WPNGGRRVSL-SGSFTRWSE------PMPMSPSE--GCPAVFQIICRLPPGHHQYKFYVD   77 (323)
Q Consensus        17 ~~~~~~v~F~-w~~~~~~V~l-~Gsf~~W~~------~~~m~~~~--~~~g~~~~~~~LppG~y~YkFiVD   77 (323)
                      ....+.++|+ |.+.+++|.| .|+|++|..      .++|++..  +..|+|++.++.....+.|+|.|.
T Consensus        19 ~~~~~~i~~~~~~~~a~~V~l~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~w~~~v~~~~~~~~Y~f~i~   89 (588)
T 1j0h_A           19 DSETLHLRLRTKKDDIDRVELLHGDPYDWQNGAWQFQMMPMRKTGSDELFDYWFAEVKPPYRRLRYGFVLY   89 (588)
T ss_dssp             SSSCEEEEEEEETTTCSEEEEEEECTTCEETTEECCEEEECEEEEECSSEEEEEEEECCTTSCEEEEEEEE
T ss_pred             CCCEEEEEEEECCCCccEEEEEECCCCCccccccceEEEEeEEeecCCCeEEEEEEEECCCcEEEEEEEEE
Confidence            4567788886 4568999999 799999865      46898753  224579999998777889999885

>1vem_A Beta-amylase; beta-alpha-barrels, optimum PH, hydrolase; HET: GLC; 1.85A {Bacillus cereus} SCOP: b.3.1.1 c.1.8.1 PDB: 1b90_A* 1j0y_A* 1j0z_A* 1j10_A* 1b9z_A* 1j12_A* 1j18_A* 1j11_A* 5bca_A 1veo_A* 1itc_A* 1ven_A* 1vep_A* 1cqy_A

Probab=95.65  E-value=0.017  Score=57.32  Aligned_cols=59  Identities=17%  Similarity=0.268  Sum_probs=46.5

Q ss_pred             CCeeeEEEEEeeC----CCceEEEEeccC---CCCCCC---CCCCCCCCCCeEEEEEEeCCce-EEEEEEE
Q 020637           17 GSILVPVRFIWPN----GGRRVSLSGSFT---RWSEPM---PMSPSEGCPAVFQIICRLPPGH-HQYKFYV   76 (323)
Q Consensus        17 ~~~~~~v~F~w~~----~~~~V~l~Gsf~---~W~~~~---~m~~~~~~~g~~~~~~~LppG~-y~YkFiV   76 (323)
                      ....+.|+|...+    -|++|+|+||-.   +|++..   +|.... .++.|++++.||+|. ++|||++
T Consensus       416 t~~~v~V~F~v~~~~t~~Ge~v~vvGs~~eLG~W~~~~a~~~l~~~~-~p~~W~~~v~lp~~~~~eYKyv~  485 (516)
T 1vem_A          416 GVTPVMQTIVVKNVPTTIGDTVYITGNRAELGSWDTKQYPIQLYYDS-HSNDWRGNVVLPAERNIEFKAFI  485 (516)
T ss_dssp             SCCEEEEEEEEESCCCCTTCEEEEEESSGGGTTTCSSSSCEECEEET-TTTEEEEEEEEETTCCEEEEEEE
T ss_pred             ccCccceEEEEeeccCCCCCEEEEEeChhhhCCCChhhhceecccCC-CCCEEEEEEEECCCCcEEEEEEE
Confidence            4567899999864    389999999976   798753   565422 245999999999985 9999998

>2e8y_A AMYX protein, pullulanase; multiple domain, beta-alpha-barrel, alpha-amylase-family, HY; 2.11A {Bacillus subtilis} PDB: 2e8z_A* 2e9b_A*

Probab=95.28  E-value=0.019  Score=59.22  Aligned_cols=65  Identities=22%  Similarity=0.345  Sum_probs=47.8

Q ss_pred             EEEEE-eeCCCceEEEEeccCCCCC-CCCCCCCCCCCCeEEEEEE-eCCceEEEEEEEc--Cee--ecCCCCCee
Q 020637           22 PVRFI-WPNGGRRVSLSGSFTRWSE-PMPMSPSEGCPAVFQIICR-LPPGHHQYKFYVD--GEW--RHDENQPHV   89 (323)
Q Consensus        22 ~v~F~-w~~~~~~V~l~Gsf~~W~~-~~~m~~~~~~~g~~~~~~~-LppG~y~YkFiVD--G~w--~~d~~~p~~   89 (323)
                      .++|+ |.+.|++|.|++.|++|.. .++|++..  .|+|++.++ +.+|. .|+|.|+  |.|  ..||....+
T Consensus       114 ~~~f~vwap~a~~V~l~~~~~~~~~~~~~m~~~~--~g~w~~~v~~~~~g~-~Y~f~v~~~g~~~~~~DPya~~~  185 (718)
T 2e8y_A          114 HTVFKVWAPAATSAAVKLSHPNKSGRTFQMTRLE--KGVYAVTVTGDLHGY-EYLFCICNNSEWMETVDQYAKAV  185 (718)
T ss_dssp             EEEEEEECTTCSEEEEEEECTTSCCEEEECEECG--GGEEEEEEESCCTTC-EEEEEEEETTEEEEECCTTCSSB
T ss_pred             cEEEEEECCCCCEEEEEEEcCCCcceEEeCccCC--CCEEEEEECCCCCCC-eEEEEEEeCCeEEEecCCccccc
Confidence            47776 5678999999999998864 36998865  689999987 45663 5666665  764  568766543

>2fhf_A Pullulanase; multiple domain, beta-alpha-barrel, alpha-amylase-family, complex with maltotetraose, hydrolase; HET: GLC; 1.65A {Klebsiella aerogenes} SCOP: b.1.18.2 b.1.18.2 b.3.1.3 b.71.1.1 c.1.8.1 PDB: 2fh6_A* 2fh8_A* 2fhb_A* 2fhc_A* 2fgz_A*

Probab=94.91  E-value=0.023  Score=61.15  Aligned_cols=67  Identities=18%  Similarity=0.217  Sum_probs=49.1

Q ss_pred             EEEEE-eeCCCceEEEEe-ccCCCCC-CCCCCCCCCCCCeEEEEEE-eCCceEEEEEEEc------Ce----eecCCCCC
Q 020637           22 PVRFI-WPNGGRRVSLSG-SFTRWSE-PMPMSPSEGCPAVFQIICR-LPPGHHQYKFYVD------GE----WRHDENQP   87 (323)
Q Consensus        22 ~v~F~-w~~~~~~V~l~G-sf~~W~~-~~~m~~~~~~~g~~~~~~~-LppG~y~YkFiVD------G~----w~~d~~~p   87 (323)
                      -++|+ |.+.|++|.|++ +|++|.. .++|.+.. ..|+|++.++ +.+|.+ |+|.|+      |.    ...||...
T Consensus       305 gv~F~vwAP~A~~V~L~l~d~~~~~~~~~~m~~~~-~~GvW~~~v~~~~~G~~-Y~y~v~~~~p~~g~~~~~~~~DPYa~  382 (1083)
T 2fhf_A          305 GVTFRVWAPTAQQVELVIYSADKKVIASHPMTRDS-ASGAWSWQGGSDLKGAF-YRYAMTVYHPQSRKVEQYEVTDPYAH  382 (1083)
T ss_dssp             EEEEEEECTTCSEEEEEEECTTCCEEEEEECEECT-TTCEEEEEECGGGTTCE-EEEEEEEEETTTTEEEEEEECCTTCS
T ss_pred             eEEEEEECCCCCEEEEEEEcCCCCccceEECeECC-CCCEEEEEECCCCCCCE-EEEEEEeecCCCCccccceecCCccc
Confidence            36777 577899999999 8999965 36898543 3689999986 778865 777775      42    46777765


Q ss_pred             eee
Q 020637           88 HVS   90 (323)
Q Consensus        88 ~~~   90 (323)
                      ...
T Consensus       383 ~~~  385 (1083)
T 2fhf_A          383 SLS  385 (1083)
T ss_dssp             CBC
T ss_pred             eec
Confidence            443

>2ya0_A Putative alkaline amylopullulanase; hydrolase, glycoside hydrolase; 1.85A {Streptococcus pneumoniae} PDB: 2ya2_A*

Probab=94.27  E-value=0.052  Score=55.86  Aligned_cols=66  Identities=14%  Similarity=0.262  Sum_probs=48.2

Q ss_pred             EEEE-eeCCCceEEEEe-ccCCCCC---CCCCCCCCCCCCeEEEEEEe--CCc-----eEEEEEEEc--Ce--eecCCCC
Q 020637           23 VRFI-WPNGGRRVSLSG-SFTRWSE---PMPMSPSEGCPAVFQIICRL--PPG-----HHQYKFYVD--GE--WRHDENQ   86 (323)
Q Consensus        23 v~F~-w~~~~~~V~l~G-sf~~W~~---~~~m~~~~~~~g~~~~~~~L--ppG-----~y~YkFiVD--G~--w~~d~~~   86 (323)
                      |+|+ |.+.|++|.|++ ++++|..   .++|.+..  .|+|++.++-  .+|     -+.|+|.|+  |.  ...||..
T Consensus        26 v~F~vwap~A~~V~l~l~~~~~~~~~~~~~~m~~~~--~gvW~~~v~~~~~~g~~~~~g~~Y~y~v~~~~~~~~~~DPya  103 (714)
T 2ya0_A           26 VDLTLWSPSADKVSVVVYDKNDPDKVVGTVALEKGE--RGTWKQTLDSTNKLGITDFTGYYYQYQIERQGKTVLALDPYA  103 (714)
T ss_dssp             EEEEEECTTCSEEEEEEECSSCTTSEEEEEECEECG--GGEEEEEECTTCSSSCSCCTTCEEEEEEEETTEEEEECCTTC
T ss_pred             EEEEEECCCCCEEEEEEEeCCCCCccceEEeCccCC--CCEEEEEECCccCCCccccCCcEEEEEEEeCCceEEecCCce
Confidence            6786 677899999999 8888864   47898753  6999999873  134     267888886  53  4678876


Q ss_pred             Ceee
Q 020637           87 PHVS   90 (323)
Q Consensus        87 p~~~   90 (323)
                      ..+.
T Consensus       104 ~~~~  107 (714)
T 2ya0_A          104 KSLA  107 (714)
T ss_dssp             SEEC
T ss_pred             eeec
Confidence            5443

>1ea9_C Cyclomaltodextrinase; hydrolase, glycosidase; 3.2A {Bacillus SP} SCOP: b.1.18.2 b.71.1.1 c.1.8.1

Probab=94.21  E-value=0.015  Score=58.51  Aligned_cols=61  Identities=16%  Similarity=0.207  Sum_probs=45.6

Q ss_pred             CCeeeEEEEE-eeCCCceEEE-EeccCCCCC---CCCCCCCC--CCCCeEEEEEEeCCceEEEEEEEc
Q 020637           17 GSILVPVRFI-WPNGGRRVSL-SGSFTRWSE---PMPMSPSE--GCPAVFQIICRLPPGHHQYKFYVD   77 (323)
Q Consensus        17 ~~~~~~v~F~-w~~~~~~V~l-~Gsf~~W~~---~~~m~~~~--~~~g~~~~~~~LppG~y~YkFiVD   77 (323)
                      ....+.++|+ |.+.+++|.| .|+|++|..   .++|++..  +..|+|++.++.....+.|||.|.
T Consensus        19 ~~~~~~~~~~~~~~~a~~V~l~~~d~~~~~~~~~~~~M~~~~~~~~~~~w~~~i~~~~~~~~Y~f~i~   86 (583)
T 1ea9_C           19 NGTTVHLRIRTKKDDMTAVYALAGDKYMWDHTMEYVPMTKLATDELFDYWECEVTPPYRRVKYGFLLQ   86 (583)
T ss_dssp             SSSCEECCCEECTTCCSBEEEEEECSSSCTTTCEEEEECEEEECSSCEEECCEECCTTSCEEECBCCE
T ss_pred             CCCEEEEEEEECCCCccEEEEEECCCcCCCCcEEEEEEEEEeccCCeEEEEEEEECCCceEEEEEEEE
Confidence            4456667775 4567999999 799999975   36898753  224579999987777788888873

>4aio_A Limit dextrinase; hydrolase, pullulanase, glycoside hydrolase family 13; 1.90A {Hordeum vulgare} PDB: 2x4c_A* 2y4s_A* 2y5e_A* 2x4b_A

Probab=93.99  E-value=0.035  Score=57.99  Aligned_cols=53  Identities=15%  Similarity=0.090  Sum_probs=38.2

Q ss_pred             EEEE-eeCCCceEEEEeccCCCCCCC--CCCCCCCCCCeEEEEEE-eCCceEEEEEEEcC
Q 020637           23 VRFI-WPNGGRRVSLSGSFTRWSEPM--PMSPSEGCPAVFQIICR-LPPGHHQYKFYVDG   78 (323)
Q Consensus        23 v~F~-w~~~~~~V~l~Gsf~~W~~~~--~m~~~~~~~g~~~~~~~-LppG~y~YkFiVDG   78 (323)
                      |+|+ |.+.|++|.|++-+++|....  .|.+.  ..|+|++.++ +.+|. .|+|.|+|
T Consensus       138 ~~F~vwAp~A~~V~l~l~~~~~~~~~~~~~~~~--~~g~W~~~~~~~~~g~-~Y~y~v~~  194 (884)
T 4aio_A          138 VSLHLWAPTAQGVSVCFFDGPAGPALETVQLKE--SNGVWSVTGPREWENR-YYLYEVDV  194 (884)
T ss_dssp             EEEEEECTTCSEEEEEEESTTTSCEEEEEECEE--ETTEEEEEEEGGGTTC-EEEEEEEE
T ss_pred             EEEEEECCCCCEEEEEEEeCCCCCeeeeeeecC--CCCEEEEEECCCCCCC-EEEEEEeC
Confidence            7787 678899999999665665532  23333  3799999987 66675 48888875

>3faw_A Reticulocyte binding protein; TIM barrel, beta barrel, hydrolase, cell WALL, peptidoglycan-anchor, secreted; 2.10A {Streptococcus agalactiae COH1} PDB: 3fax_A*

Probab=93.98  E-value=0.028  Score=59.24  Aligned_cols=65  Identities=15%  Similarity=0.197  Sum_probs=48.5

Q ss_pred             EEEE-eeCCCceEEEEe-ccCCCCC---CCCCCCCCCCCCeEEEEEEeCCce-----EEEEEEEcC--e--eecCCCCCe
Q 020637           23 VRFI-WPNGGRRVSLSG-SFTRWSE---PMPMSPSEGCPAVFQIICRLPPGH-----HQYKFYVDG--E--WRHDENQPH   88 (323)
Q Consensus        23 v~F~-w~~~~~~V~l~G-sf~~W~~---~~~m~~~~~~~g~~~~~~~LppG~-----y~YkFiVDG--~--w~~d~~~p~   88 (323)
                      +.|+ |.+.|++|.|++ ++++|..   .++|.+..  .|+|++.+.+.||.     +.|+|.|++  .  ...||....
T Consensus       146 v~F~vwAP~A~~V~L~l~d~~~~~~~~~~~~m~~~~--~gvW~~~v~~~~G~~~~~g~~Y~yrv~~~~~~~~~~DPYA~~  223 (877)
T 3faw_A          146 VEASLWSPSADSVTMIIYDKDNQNRVVATTPLVKNN--KGVWQTILDTKLGIKNYTGYYYLYEIKRGKDKVKILDPYAKS  223 (877)
T ss_dssp             EEEEEECTTCSEEEEEEEETTEEEEEEEEEECEECT--TSEEEEEECGGGTCSCCTTCEEEEEEEETTEEEEECCTTCSC
T ss_pred             EEEEEECCCCCEEEEEEEeCCCCccceeeeccccCC--CCEEEEEECCCCCCccCCCeEEEEEEeeCCceeEecCcccee
Confidence            6777 567899999997 7888853   47898754  79999999776762     678888863  3  567887654


Q ss_pred             e
Q 020637           89 V   89 (323)
Q Consensus        89 ~   89 (323)
                      +
T Consensus       224 ~  224 (877)
T 3faw_A          224 L  224 (877)
T ss_dssp             B
T ss_pred             c
Confidence            3

>1gcy_A Glucan 1,4-alpha-maltotetrahydrolase; beta-alpha-barrel, beta sheet; 1.60A {Pseudomonas stutzeri} SCOP: b.71.1.1 c.1.8.1 PDB: 1jdc_A* 1jda_A* 1jdd_A* 1qi5_A* 1qi3_A* 1qi4_A* 2amg_A 1qpk_A*

Probab=93.48  E-value=0.014  Score=57.97  Aligned_cols=57  Identities=23%  Similarity=0.420  Sum_probs=0.0

Q ss_pred             eeeEEEEEe-eC---CCceEEEEeccC---CCCCC--CCCCCCCCCCCeEEEEEEeCCce-EEEEEEE
Q 020637           19 ILVPVRFIW-PN---GGRRVSLSGSFT---RWSEP--MPMSPSEGCPAVFQIICRLPPGH-HQYKFYV   76 (323)
Q Consensus        19 ~~~~v~F~w-~~---~~~~V~l~Gsf~---~W~~~--~~m~~~~~~~g~~~~~~~LppG~-y~YkFiV   76 (323)
                      ..++|+|+. .+   .|++|+|+||-.   +|++.  ++|.... ....|++++.||+|. ++|||+|
T Consensus       429 ~~v~v~F~v~~~~t~~G~~v~v~G~~~~LG~W~~~~a~~l~~~~-~~~~W~~~v~lp~~~~~eyKy~~  495 (527)
T 1gcy_A          429 ALVSVSFRCDNGATQMGDSVYAVGNVSQLGNWSPAAALRLTDTS-GYPTWKGSIALPAGQNEEWKCLI  495 (527)
T ss_dssp             --------------------------------------------------------------------
T ss_pred             CEEEEEEEEecccCCCCCeEEEEcChhHhCCCCcccCccCccCC-CCCeEEEEEEeCCCCcEEEEEEE
Confidence            468899997 33   389999999876   79874  5787321 257899999999984 9999997

>2wan_A Pullulanase; hydrolase, glycoside hydrolase, polysaccharide, amylase, starch, carbohydrate; 1.65A {Bacillus acidopullulyticus}

Probab=93.03  E-value=0.14  Score=54.29  Aligned_cols=60  Identities=27%  Similarity=0.499  Sum_probs=42.5

Q ss_pred             eeEEEEEeeCCCceEEEEecc-------CCCCCCC---CCCCCCCCCCeEEEEEEeCCceEEEEEEEcCeee
Q 020637           20 LVPVRFIWPNGGRRVSLSGSF-------TRWSEPM---PMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWR   81 (323)
Q Consensus        20 ~~~v~F~w~~~~~~V~l~Gsf-------~~W~~~~---~m~~~~~~~g~~~~~~~LppG~y~YkFiVDG~w~   81 (323)
                      +++|..--..++..+.+.|+|       .+|++..   -|.+..  +|.|+.+-.||+|.|+||+.++|.|.
T Consensus       152 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~w~p~~~~~~~~~~~--~~~y~~~~~l~~g~y~~kv~~~~~w~  221 (921)
T 2wan_A          152 KIPVTSAVSANPVTAVLVGDLQQALGAANNWSPDDDHTLLKKIN--PNLYQLSGTLPAGTYQYKIALDHSWN  221 (921)
T ss_dssp             EECEEEEEECCCCCEEEEETTSGGGTCSSSSCTTCGGGBCEEEE--TTEEEEEEEECSEEEEEEEEETTSSS
T ss_pred             cccccccccccccccccccchhhhccccccCCCCCCcceeeccC--CcceeeeeccCCcceeEEEeecCccc
Confidence            334433333445567788876       5798864   343332  78999999999999999999997773

>1ji1_A Alpha-amylase I; beta/alpha barrel, hydrolase; 1.60A {Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1uh3_A* 2d0f_A* 1izj_A 1uh4_A* 1uh2_A* 2d0g_A* 2d0h_A* 1izk_A

Probab=92.22  E-value=0.091  Score=53.21  Aligned_cols=57  Identities=12%  Similarity=0.129  Sum_probs=40.9

Q ss_pred             EEEEEee-----CCCceEEEEeccCCCCCCCCCCC--CC--CCCCeEEEEEEeCCceEEEEEEEcC
Q 020637           22 PVRFIWP-----NGGRRVSLSGSFTRWSEPMPMSP--SE--GCPAVFQIICRLPPGHHQYKFYVDG   78 (323)
Q Consensus        22 ~v~F~w~-----~~~~~V~l~Gsf~~W~~~~~m~~--~~--~~~g~~~~~~~LppG~y~YkFiVDG   78 (323)
                      .|+|+.-     +.+++|.|++.|++-...++|.+  ..  +..|+|++.++.......|+|.|+|
T Consensus        31 ~v~f~v~~~~~ap~a~~V~l~~~~~~~~~~~~m~~~~~~~~~~~~~w~~~i~~~~~g~~Y~f~i~~   96 (637)
T 1ji1_A           31 SVTLKLRTFKGDITSANIKYWDTADNAFHWVPMVWDSNDPTGTFDYWKGTIPASPSIKYYRFQIND   96 (637)
T ss_dssp             CEEEEEEEETTCCSEEEEEEEETTTTEEEEEECEEEEECTTSSEEEEEEEECCCSSCEEEEEEEEE
T ss_pred             EEEEEEEEecCcCCeeEEEEEEecCCCEEEEEeEEeeccccCCeeEEEEEEECCCceEEEEEEEEE
Confidence            4677643     46899999999874112368987  32  2347999999876666789999975

>2wan_A Pullulanase; hydrolase, glycoside hydrolase, polysaccharide, amylase, starch, carbohydrate; 1.65A {Bacillus acidopullulyticus}

Probab=90.73  E-value=0.17  Score=53.53  Aligned_cols=63  Identities=14%  Similarity=0.155  Sum_probs=45.3

Q ss_pred             EEEEEe-eCCCceEEEEeccCCCC----CCCCCCCCCCCCCeEEEEEE-eCCceEEEEEEE--cCe--eecCCCCCe
Q 020637           22 PVRFIW-PNGGRRVSLSGSFTRWS----EPMPMSPSEGCPAVFQIICR-LPPGHHQYKFYV--DGE--WRHDENQPH   88 (323)
Q Consensus        22 ~v~F~w-~~~~~~V~l~Gsf~~W~----~~~~m~~~~~~~g~~~~~~~-LppG~y~YkFiV--DG~--w~~d~~~p~   88 (323)
                      .++|+. .+.|++|.|++ |++|.    ..++|.+..  .|+|++.++ +.+|. .|+|.|  +|.  ...||....
T Consensus       326 gv~F~vwaP~A~~V~l~l-f~~~~~~~~~~~~m~~~~--~gvW~~~v~~~~~g~-~Y~y~v~~~g~~~~~~DPya~~  398 (921)
T 2wan_A          326 ATSFRVWAPTASNVQLLL-YNSEKGSITKQLEMQKSD--NGTWKLQVSGNLENW-YYLYQVTVNGTTQTAVDPYARA  398 (921)
T ss_dssp             EEEEEEECTTCSEEEEEE-ESSSSSCCSEEEECEECG--GGEEEEEEESCCTTC-EEEEEEECSSCEEEECCTTCSS
T ss_pred             eEEEEEECCCCCEEEEEE-EeCCCCCcCeEEeCeeCC--CCEEEEEEccCCCCC-EEEEEEEeCCeEEEecCCccee
Confidence            466765 56799999997 99994    236898764  689999987 56675 366666  564  457776543

>3m07_A Putative alpha amylase; IDP00968, csgid, structural genomics, center for structural genomics of infectious diseases, unknown function; HET: BTB PG4 PGE; 1.40A {Salmonella enterica subsp}

Probab=90.66  E-value=0.23  Score=50.27  Aligned_cols=62  Identities=23%  Similarity=0.309  Sum_probs=46.9

Q ss_pred             EEEEEe-eCCCceEEEEeccCCCCCCCCCCCCCCCCCeEEEEEE-eCCceEEEEEEEc-CeeecCCCCCeee
Q 020637           22 PVRFIW-PNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICR-LPPGHHQYKFYVD-GEWRHDENQPHVS   90 (323)
Q Consensus        22 ~v~F~w-~~~~~~V~l~Gsf~~W~~~~~m~~~~~~~g~~~~~~~-LppG~y~YkFiVD-G~w~~d~~~p~~~   90 (323)
                      -++|+. .+.|++|.|++   +|. ..+|++.+  +|.|.+.++ +.+|. .|+|.|+ |..+.||......
T Consensus        43 ~~~F~vwap~a~~v~l~~---~~~-~~~m~~~~--~g~~~~~~~~~~~g~-~Y~y~v~~~~~~~DP~a~~~~  107 (618)
T 3m07_A           43 VVRFRLWATGQQKVMLRL---AGK-DQEMQANG--DGWFTLDVAGVTPGT-EYNFVLSDGMVVPDPASRAQK  107 (618)
T ss_dssp             EEEEEEECTTCSCEEEEE---TTE-EEECEECS--TTEEEEEEETCCTTC-EEEEEETTSCEECCTTCSCBS
T ss_pred             cEEEEEECCCCCEEEEEE---CCC-cccCeecC--CEEEEEEeCCCCCCC-EEEEEEeCCeEeccccceeee
Confidence            367875 67899999998   343 37998865  689999885 77786 5899995 5678888876544

>4fch_A Outer membrane protein SUSE; starch binding, extracellular, carbohydrate-B protein; HET: GLC; 1.30A {Bacteroides thetaiotaomicron}

Probab=89.48  E-value=0.28  Score=42.80  Aligned_cols=50  Identities=16%  Similarity=0.171  Sum_probs=40.3

Q ss_pred             CCceEEEEeccCCCCCC--CCCCCCCCCCCeEEEEEEeCCceEEEEEEEcCee
Q 020637           30 GGRRVSLSGSFTRWSEP--MPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEW   80 (323)
Q Consensus        30 ~~~~V~l~Gsf~~W~~~--~~m~~~~~~~g~~~~~~~LppG~y~YkFiVDG~w   80 (323)
                      ..+++||+|++++|...  .+|.+..+.+|.|...+.|+.|. +|||.-+..|
T Consensus        11 ~p~~lY~vG~~~gW~~~~~~~m~~~~~~~g~y~~~~yl~ag~-~fKf~~~~~~   62 (221)
T 4fch_A           11 PPKTMFIVGSMLDTDWKVWKPMAGVYGMDGQFYSMIYFDANS-EFKFGTKENE   62 (221)
T ss_dssp             CCSCCEEEETTTCTTSCCEEECEECTTCTTEEEEEEEECTTE-EEEEESSTTC
T ss_pred             CcceEEEEecCCCCCCCccceeeeccCCCceEEEEEEEcCCC-eEEEeeccCc
Confidence            36789999999988643  57887765689999999998775 8999986554

>2c3v_A Alpha-amylase G-6; carbohydrate-binding module, starch binding, carbohydrate binding, glycoside hydrolase, amylose, amylopectin; HET: TYI; 1.39A {Bacillus halodurans} PDB: 2c3v_B* 2c3w_A* 2c3x_A*

Probab=88.96  E-value=0.87  Score=35.03  Aligned_cols=63  Identities=16%  Similarity=0.448  Sum_probs=43.5

Q ss_pred             EEEEEeeCCCceEEEEeccC--CCCCC--CCCCCCCCCCCeEEEEEEeCCc-eEEEEEEEcC--eeecCCCC
Q 020637           22 PVRFIWPNGGRRVSLSGSFT--RWSEP--MPMSPSEGCPAVFQIICRLPPG-HHQYKFYVDG--EWRHDENQ   86 (323)
Q Consensus        22 ~v~F~w~~~~~~V~l~Gsf~--~W~~~--~~m~~~~~~~g~~~~~~~LppG-~y~YkFiVDG--~w~~d~~~   86 (323)
                      .+++.|..++..|+|-=.+.  +|...  .+|.+.. +.|.|..+++|+.+ .++|+| -||  .|-.+...
T Consensus        11 ~vTvyY~sg~~~~ylHy~~~~g~Wt~vpgv~M~~~~-~~Gw~~~TI~~~~~~~l~~~F-~dG~~~WDNN~g~   80 (102)
T 2c3v_A           11 DITIYYKTGWTHPHIHYSLNQGAWTTLPGVPLTKSE-XEGXVKVTIEAEEGSQLRAAF-NNGSGQWDNNQGR   80 (102)
T ss_dssp             SEEEEEECCCSSCEEEEEETTCCBCCTTCEECEECS-STTEEEEEECCCTTCEEEEEE-ECSSSCEECGGGT
T ss_pred             EEEEEEcCCCCcEEEEEeCCCCCcccCCCcCccccc-cCCceEEEEecCCCceEEEEE-eCCCcccccCCCc
Confidence            45566667788888864454  48753  5887642 47889999999964 799998 565  58665443

>2ya1_A Putative alkaline amylopullulanase; hydrolase, glycoside hydrolase; HET: BGC GLC; 2.25A {Streptococcus pneumoniae}

Probab=87.70  E-value=0.38  Score=51.48  Aligned_cols=63  Identities=13%  Similarity=0.185  Sum_probs=45.5

Q ss_pred             EEEEe-eCCCceEEEEe-ccCCCCC---CCCCCCCCCCCCeEEEEEEeC--Cc-----eEEEEEEEc--Ce--eecCCCC
Q 020637           23 VRFIW-PNGGRRVSLSG-SFTRWSE---PMPMSPSEGCPAVFQIICRLP--PG-----HHQYKFYVD--GE--WRHDENQ   86 (323)
Q Consensus        23 v~F~w-~~~~~~V~l~G-sf~~W~~---~~~m~~~~~~~g~~~~~~~Lp--pG-----~y~YkFiVD--G~--w~~d~~~   86 (323)
                      |+|+. .+.|++|.|++ +|++|..   .++|.+..  .|+|++.++-.  +|     -+.|+|.|+  |.  ...||..
T Consensus       333 v~F~vwAP~A~~V~L~l~d~~~~~~~~~~~~m~~~~--~gvW~~~v~~~~~~g~~~~~G~~Y~y~i~~~~~~~~~~DPYa  410 (1014)
T 2ya1_A          333 VDLTLWSPSADKVSVVVYDKNDPDKVVGTVALEKGE--RGTWKQTLDSTNKLGITDFTGYYYQYQIERQGKTVLALDPYA  410 (1014)
T ss_dssp             EEEEEECTTCSEEEEEEECSSCTTSEEEEEECEECG--GGEEEEEECTTCSSCCSCCTTCEEEEEEEETTEEEEECCTTC
T ss_pred             EEEEEECCCCCEEEEEEEECCCCCccceEEecccCC--CCEEEEEEcccccCCccccCCcEEEEEEEeCCeEEEecCccc
Confidence            67764 67899999999 8988864   47898743  78999988731  23     266788885  53  4678865


Q ss_pred             C
Q 020637           87 P   87 (323)
Q Consensus        87 p   87 (323)
                      .
T Consensus       411 ~  411 (1014)
T 2ya1_A          411 K  411 (1014)
T ss_dssp             S
T ss_pred             e
Confidence            4

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	323
d2qlvb1	87	b.1.18.21 (B:161-247) SIP2 {Saccharomyces cerevisi	4e-25
d1z0na1	87	b.1.18.21 (A:77-163) 5'-AMP-activated protein kina	8e-25
d2ooxe1	179	d.37.1.1 (E:3-181) Uncharacterized protein C1556.0	1e-13
d2v8qe2	159	d.37.1.1 (E:23-181) 5'-AMP-activated protein kinas	2e-13

>d2qlvb1 b.1.18.21 (B:161-247) SIP2 {Saccharomyces cerevisiae [TaxId: 4932]} Length = 87

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: AMPK-beta glycogen binding domain-like
domain: SIP2
species: Saccharomyces cerevisiae [TaxId: 4932]

 Score = 94.4 bits (234), Expect = 4e-25
 Identities = 27/82 (32%), Positives = 42/82 (51%)

Query: 18 SILVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVD 77
          S++VPV   W  GG +V ++GSFT+W + + + P       F +  RL PG H+++F VD
Sbjct: 1  SLMVPVEIRWQQGGSKVYVTGSFTKWRKMIGLIPDSDNNGSFHVKLRLLPGTHRFRFIVD 60

Query: 78 GEWRHDENQPHVSGNYGVVNCV 99
           E R  +  P  +   G     
Sbjct: 61 NELRVSDFLPTATDQMGNFVNY 82

>d1z0na1 b.1.18.21 (A:77-163) 5'-AMP-activated protein kinase subunit beta-1 {Rattus norvegicus [TaxId: 10116]} Length = 87

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: AMPK-beta glycogen binding domain-like
domain: 5'-AMP-activated protein kinase subunit beta-1
species: Rattus norvegicus [TaxId: 10116]

 Score = 93.8 bits (233), Expect = 8e-25
 Identities = 40/88 (45%), Positives = 51/88 (57%), Gaps = 5/88 (5%)

Query: 21  VPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEW 80
            P  F W  GG+ V LSGSF  WS  +PM+ S+     F  I  LP G HQYKF+VDG+W
Sbjct: 2   RPTVFRWTGGGKEVYLSGSFNNWS-KLPMTRSQN---NFVAILDLPEGEHQYKFFVDGQW 57

Query: 81  RHDENQPHVSGNYGVVNCVYIAVPQPDM 108
            HD ++P V+   G VN + I V + D 
Sbjct: 58  THDPSEPIVTSQLGTVNNI-IQVKKTDF 84

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 179

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 65.8 bits (159), Expect = 1e-13
 Identities = 40/165 (24%), Positives = 75/165 (45%), Gaps = 10/165 (6%)

Query: 147 RISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLS 206
            I +F+ + T Y++LP S ++   DV L VK +  +L    +   PLWD    +F G+L+
Sbjct: 12  EIQAFIRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLT 71

Query: 207 ALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGP 266
             DF+ +++    + S               ++ K +L   R+++      P   +   P
Sbjct: 72  MADFVNVIKYYYQSSSFPEAI---------AEIDKFRLLGLREVERKIGAIPPETIYVHP 122

Query: 267 YDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK 311
             SL +  L + +++   +P+I   G  GS   I+ + +   ILK
Sbjct: 123 MHSLMDACLAMSKSRARRIPLIDVDGETGSEM-IVSVLTQYRILK 166

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 159

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 64.8 bits (157), Expect = 2e-13
 Identities = 47/164 (28%), Positives = 72/164 (43%), Gaps = 18/164 (10%)

Query: 148 ISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSA 207
            ++F+ +H  Y+L+P S K+   D +L VK+AF  L   G+   PLWD  K  FVG+L+ 
Sbjct: 6   YTTFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTI 65

Query: 208 LDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPY 267
            DFI IL     +      E  E    +  +V                   +PLV   P 
Sbjct: 66  TDFINILHRYYKSALVQIYELEEHKIETWREVYLQDSF-------------KPLVCISPN 112

Query: 268 DSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK 311
            SL +    +++NK+  +P+I            LY+ +   ILK
Sbjct: 113 ASLFDAVSSLIRNKIHRLPVIDPES-----GNTLYILTHKRILK 151

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	323
d2ooxe1	179	Uncharacterized protein C1556.08c {Schizosaccharom	99.96
d2qlvb1	87	SIP2 {Saccharomyces cerevisiae [TaxId: 4932]}	99.95
d2v8qe2	159	5'-AMP-activated protein kinase subunit gamma-1, A	99.94
d1z0na1	87	5'-AMP-activated protein kinase subunit beta-1 {Ra	99.94
d2yzqa1	156	Uncharacterized protein PH1780 {Pyrococcus horikos	99.87
d1y5ha3	123	Hypothetical protein Rv2626c {Mycobacterium tuberc	99.86
d2d4za3	160	Chloride channel protein, CBS tandem {Marbled elec	99.84
d2o16a3	139	Hypothetical protein VC0737 {Vibrio cholerae [TaxI	99.83
d2nyca1	140	Nuclear protein SNF4 {Baker's yeast (Saccharomyces	99.82
d2rc3a1	127	Uncharacterized protein NE2398 {Nitrosomonas europ	99.82
d2yzia1	132	Uncharacterized protein PH0107 {Pyrococcus horikos	99.82
d1pvma4	142	Hypothetical protein Ta0289 {Archaeon Thermoplasma	99.81
d1yava3	132	Hypothetical protein YkuL {Bacillus subtilis [TaxI	99.81
d1pbja3	120	Hypothetical protein MTH1622 {Archaeon Methanobact	99.81
d2ef7a1	127	Uncharacterized protein ST2348 {Sulfolobus tokodai	99.81
d1o50a3	145	Hypothetical protein TM0935 {Thermotoga maritima [	99.8
d1zfja4	126	Type II inosine monophosphate dehydrogenase CBS do	99.79
d2ooxe2	153	Uncharacterized protein C1556.08c {Schizosaccharom	99.78
d3ddja1	141	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.78
d2v8qe1	145	5'-AMP-activated protein kinase subunit gamma-1, A	99.78
d3ddja2	135	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.77
d2riha1	131	Uncharacterized protein PAE2072 {Pyrobaculum aerop	99.77
d2yzqa2	122	Uncharacterized protein PH1780 {Pyrococcus horikos	99.77
d2ouxa2	127	Magnesium transporter MgtE {Enterococcus faecalis	99.76
d2yvxa2	144	Magnesium transporter MgtE {Thermus thermophilus [	99.75
d2j9la1	169	Chloride channel protein 5, ClC-5 {Human (Homo sap	99.74
d1jr1a4	120	Type II inosine monophosphate dehydrogenase CBS do	99.73
d1vr9a3	121	Hypothetical protein TM0892, CBS tandem {Thermotog	99.72
d2ouxa2	127	Magnesium transporter MgtE {Enterococcus faecalis	98.9
d2yvxa2	144	Magnesium transporter MgtE {Thermus thermophilus [	98.75
d2yzqa1	156	Uncharacterized protein PH1780 {Pyrococcus horikos	98.72
d1pvma4	142	Hypothetical protein Ta0289 {Archaeon Thermoplasma	98.68
d2rc3a1	127	Uncharacterized protein NE2398 {Nitrosomonas europ	98.66
d3ddja2	135	Uncharacterized protein SSO3205 {Sulfolobus solfat	98.66
d2ef7a1	127	Uncharacterized protein ST2348 {Sulfolobus tokodai	98.65
d2o16a3	139	Hypothetical protein VC0737 {Vibrio cholerae [TaxI	98.63
d2yzia1	132	Uncharacterized protein PH0107 {Pyrococcus horikos	98.62
d1zfja4	126	Type II inosine monophosphate dehydrogenase CBS do	98.62
d1y5ha3	123	Hypothetical protein Rv2626c {Mycobacterium tuberc	98.6
d1o50a3	145	Hypothetical protein TM0935 {Thermotoga maritima [	98.56
d1m7xa1	110	1,4-alpha-glucan branching enzyme, N-terminal doma	98.56
d1pbja3	120	Hypothetical protein MTH1622 {Archaeon Methanobact	98.56
d2ooxe2	153	Uncharacterized protein C1556.08c {Schizosaccharom	98.54
d2bhua1	97	Glycosyltrehalose trehalohydrolase, N-terminal dom	98.53
d2d4za3	160	Chloride channel protein, CBS tandem {Marbled elec	98.53
d1yava3	132	Hypothetical protein YkuL {Bacillus subtilis [TaxI	98.51
d1jr1a4	120	Type II inosine monophosphate dehydrogenase CBS do	98.5
d1vr9a3	121	Hypothetical protein TM0892, CBS tandem {Thermotog	98.5
d2nyca1	140	Nuclear protein SNF4 {Baker's yeast (Saccharomyces	98.49
d2yzqa2	122	Uncharacterized protein PH1780 {Pyrococcus horikos	98.47
d3ddja1	141	Uncharacterized protein SSO3205 {Sulfolobus solfat	98.46
d2v8qe2	159	5'-AMP-activated protein kinase subunit gamma-1, A	98.46
d2riha1	131	Uncharacterized protein PAE2072 {Pyrobaculum aerop	98.42
d2ooxe1	179	Uncharacterized protein C1556.08c {Schizosaccharom	98.37
d2v8qe1	145	5'-AMP-activated protein kinase subunit gamma-1, A	98.34
d2j9la1	169	Chloride channel protein 5, ClC-5 {Human (Homo sap	98.3
d3bmva2	105	Cyclodextrin glycosyltransferase, C-terminal domai	98.02
d1qhoa2	110	Cyclodextrin glycosyltransferase, C-terminal domai	97.99
d1cyga2	106	Cyclodextrin glycosyltransferase, C-terminal domai	97.98
d1kula_	108	Glucoamylase, granular starch-binding domain {Aspe	97.95
d1eh9a1	90	Glycosyltrehalose trehalohydrolase, N-terminal dom	97.76
d1vema1	99	beta-amylase {Bacillus cereus [TaxId: 1396]}	97.67
d1bf2a1	162	Isoamylase, N-terminal domain N {Pseudomonas amylo	95.84
d2fhfa1	115	Pullulanase PulA {Klebsiella pneumoniae [TaxId: 57	94.73
d3c8da1	145	Enterochelin esterase {Shigella flexneri 2a str. 2	93.48
d1ji1a1	122	Maltogenic amylase, N-terminal domain N {Thermoact	88.74
d1wzla1	120	Maltogenic amylase, N-terminal domain N {Thermoact	87.0

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.96  E-value=6.9e-30  Score=218.60  Aligned_cols=168  Identities=21%  Similarity=0.371  Sum_probs=132.1

Q ss_pred             HHHHHhhhhhccccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCC
Q 020637          142 QLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNG  221 (323)
Q Consensus       142 ~~~~~~~~~~l~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~  221 (323)
                      ...++++.+||..++|||+||.|++++++++++||.+|+++|.+++++++||||++.++++|+||.+||+.++.......
T Consensus         7 ~~~~~~i~~fl~~~~~~dvm~~s~~vv~i~~~~~v~~A~~~m~~~~i~~lpVvd~~~~~~vGiis~~Di~~~l~~~~~~~   86 (179)
T d2ooxe1           7 KGALKEIQAFIRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIKYYYQSS   86 (179)
T ss_dssp             HHHHHHHHHHHHHSBHHHHSCSEEEEEEEETTSBHHHHHHHHHHHTCSCEEEEETTTTEEEEEECHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHcCCEeeeeCCCCCcEEEEECcchHHHHHHHHHHcCCCeEEEEeCCCCeeEEEEeechHHHHHHhccccc
Confidence            33788999999999999999999999999999999999999999999999999977789999999999998776443221


Q ss_pred             -CCCChhhhhhhhHHHHHHHHHHhhcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccE
Q 020637          222 -SNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEI  300 (323)
Q Consensus       222 -~~l~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~l  300 (323)
                       ......++.......+......          ..+|.+++++|.++++|.+|+.+|.++++|||||+|++.+.+ ..++
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~i~v~~~~sl~~~~~~m~~~~~~~lpVvd~~g~~~-~~~v  155 (179)
T d2ooxe1          87 SFPEAIAEIDKFRLLGLREVERK----------IGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETG-SEMI  155 (179)
T ss_dssp             SCGGGGGGGGGSBHHHHHHHHHH----------TTCSCSSCCCBCTTSBHHHHHHHHHHTTCSEEEEEEECTTTC-CEEE
T ss_pred             cchhhhhhhhccchhhhccccee----------eeecccCceEECCCCcHHHHHHHhhhcCceEEEEEecCCCcC-CCcE
Confidence             1111122222222222222211          126899999999999999999999999999999999732211 1279


Q ss_pred             EEEeeccccccc--cccCcccc
Q 020637          301 LYLASLSDILKC--KHFLHSLG  320 (323)
Q Consensus       301 vGIIT~~dIl~~--~~f~~~~~  320 (323)
                      +||||++|||++  .||++...
T Consensus       156 vgiiT~~dIlk~l~~~~~~~~~  177 (179)
T d2ooxe1         156 VSVLTQYRILKFISMNCKETAM  177 (179)
T ss_dssp             EEEEEHHHHHHHHHTTCGGGGG
T ss_pred             EEEEeHHHHHHHHHHhhhHhhc
Confidence            999999999999  89887643

>d2qlvb1 b.1.18.21 (B:161-247) SIP2 {Saccharomyces cerevisiae [TaxId: 4932]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: AMPK-beta glycogen binding domain-like
domain: SIP2
species: Saccharomyces cerevisiae [TaxId: 4932]

Probab=99.95  E-value=2.2e-28  Score=186.59  Aligned_cols=84  Identities=31%  Similarity=0.647  Sum_probs=78.2

Q ss_pred             eeeEEEEEeeCCCceEEEEeccCCCCCCCCCCCCCCCCCeEEEEEEeCCceEEEEEEEcCeeecCCCCCeeeCCCCccce
Q 020637           19 ILVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGVVNC   98 (323)
Q Consensus        19 ~~~~v~F~w~~~~~~V~l~Gsf~~W~~~~~m~~~~~~~g~~~~~~~LppG~y~YkFiVDG~w~~d~~~p~~~d~~G~~nn   98 (323)
                      .++||+|+|+++|++|+|+||||+|++..+|.+....+|.|++++.||||.|+|||+|||.|++||++|++.|++|+.||
T Consensus         2 ~~vpv~f~w~~~g~~V~v~GsFn~W~~~~~~~~~~~~~g~~~~~l~l~~G~y~YKFiVDG~w~~d~~~p~~~d~~G~~nn   81 (87)
T d2qlvb1           2 LMVPVEIRWQQGGSKVYVTGSFTKWRKMIGLIPDSDNNGSFHVKLRLLPGTHRFRFIVDNELRVSDFLPTATDQMGNFVN   81 (87)
T ss_dssp             CCEEEEEEECSCCSCEEEEEGGGTTSSCEECEECSSSTTCEEEEEEECSEEEEEEEEETTEEECCTTSCEEBCSSCCCEE
T ss_pred             eEEEEEEEECCCCeEEEEEEEecCcCcccccccccCCCccEEEEEeCCCCCEEEEEEECCcEEcCCCCCeeECCCCCEeE
Confidence            47999999999999999999999999877776655457899999999999999999999999999999999999999999


Q ss_pred             EEEe
Q 020637           99 VYIA  102 (323)
Q Consensus        99 vl~v  102 (323)
                      +|.|
T Consensus        82 vi~V   85 (87)
T d2qlvb1          82 YIEV   85 (87)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9999

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.94  E-value=7.4e-28  Score=201.98  Aligned_cols=152  Identities=34%  Similarity=0.597  Sum_probs=121.8

Q ss_pred             HhhhhhccccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCC-CCC
Q 020637          146 DRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNG-SNL  224 (323)
Q Consensus       146 ~~~~~~l~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~-~~l  224 (323)
                      ..|.+||+..||||+||.+.++|+++.++++.+|+++|.+|+++++||+|++.++++|+||.+|++..+....... ...
T Consensus         4 ~~~~~~l~~~t~~Dlm~~~~~vv~l~~~~sv~eA~~~l~~~~~~~~pVv~~~~~~~vG~is~~Dl~~~~~~~~~~~~~~~   83 (159)
T d2v8qe2           4 SVYTTFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRYYKSALVQI   83 (159)
T ss_dssp             CHHHHHHHHSBGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSEEEEEETTTTEEEEEEEHHHHHHHHHHHHHHHTTTC
T ss_pred             hHHHHHhcCCEEEeECCCCCceEEEcCCCcHHHHHHHHHHcCCCceeEEECCCCcEEEEEEHHHHHHHHHhccccccchh
Confidence            3688999999999999999999999999999999999999999999999977899999999999998765433210 001


Q ss_pred             ChhhhhhhhHHHHHHHHHHhhcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEe
Q 020637          225 TEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLA  304 (323)
Q Consensus       225 ~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGII  304 (323)
                        ..+.......+...            ...+|.++++++.|+++|.+|+.+|.++++||+||+|+  +.|   +++|||
T Consensus        84 --~~~~~~~~~~~~~~------------~~~~~~~~~~~v~~~~~l~~v~~~m~~~~~~~v~Vvd~--~~g---~~~Giv  144 (159)
T d2v8qe2          84 --YELEEHKIETWREV------------YLQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDP--ESG---NTLYIL  144 (159)
T ss_dssp             --CCGGGCBHHHHHHH------------HSSSSCCCCCCBCTTSBHHHHHHHHHHHTCSCEEEECT--TTC---CEEEEE
T ss_pred             --hhhhhhhcccccce------------eeeeeccceEEECCCCcHHHHHHHHHHhCCeEEEEEEC--CCC---eEEEEE
Confidence              11111111111111            12368999999999999999999999999999999985  445   899999


Q ss_pred             eccccccc--cccC
Q 020637          305 SLSDILKC--KHFL  316 (323)
Q Consensus       305 T~~dIl~~--~~f~  316 (323)
                      |++|||++  .|..
T Consensus       145 T~~dilk~l~~~~~  158 (159)
T d2v8qe2         145 THKRILKFLKLFIT  158 (159)
T ss_dssp             CHHHHHHHHHHHSC
T ss_pred             eHHHHHHHHHHHcC
Confidence            99999999  4443

>d1z0na1 b.1.18.21 (A:77-163) 5'-AMP-activated protein kinase subunit beta-1 {Rattus norvegicus [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: AMPK-beta glycogen binding domain-like
domain: 5'-AMP-activated protein kinase subunit beta-1
species: Rattus norvegicus [TaxId: 10116]

Probab=99.94  E-value=2.7e-27  Score=180.40  Aligned_cols=84  Identities=45%  Similarity=0.896  Sum_probs=76.8

Q ss_pred             eeEEEEEeeCCCceEEEEeccCCCCCCCCCCCCCCCCCeEEEEEEeCCceEEEEEEEcCeeecCCCCCeeeCCCCccceE
Q 020637           20 LVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGVVNCV   99 (323)
Q Consensus        20 ~~~v~F~w~~~~~~V~l~Gsf~~W~~~~~m~~~~~~~g~~~~~~~LppG~y~YkFiVDG~w~~d~~~p~~~d~~G~~nnv   99 (323)
                      ++|++|+|+++|++|+|+|||++|++ .+|.+.   +|.|++++.||||.|+|||+|||+|++||++|++.|+.|+.||+
T Consensus         1 ~~P~~f~w~~~a~~V~v~Gsfn~W~~-~~~~~~---~g~~~~tl~L~~G~y~YKFiVDG~w~~d~~~~~~~d~~G~~Nnv   76 (87)
T d1z0na1           1 ARPTVFRWTGGGKEVYLSGSFNNWSK-LPMTRS---QNNFVAILDLPEGEHQYKFFVDGQWTHDPSEPIVTSQLGTVNNI   76 (87)
T ss_dssp             CEEEEEEECSCCSCEEEEEGGGTTCC-EECEEE---TTEEEEEEEECSEEEEEEEEETTEEECCTTSCEEECTTSCEEEE
T ss_pred             CCCEEEEEcCCCEEEEEEEEeCCCCc-cccccC---CCcEEEEEECCCceEEEEEEECCEEEeCCCCCeeECCCCCEEEE
Confidence            47999999999999999999999986 577664   68999999999999999999999999999999999999999999


Q ss_pred             EEecCCCCC
Q 020637          100 YIAVPQPDM  108 (323)
Q Consensus       100 l~v~~~~~~  108 (323)
                      |.| ++.++
T Consensus        77 i~V-~~~D~   84 (87)
T d1z0na1          77 IQV-KKTDF   84 (87)
T ss_dssp             EEE-CSCTT
T ss_pred             EEE-CCCcc
Confidence            999 65543

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.87  E-value=8.2e-23  Score=170.29  Aligned_cols=151  Identities=19%  Similarity=0.241  Sum_probs=105.7

Q ss_pred             cccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCC-CCChhhhhh
Q 020637          153 STHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGS-NLTEEELET  231 (323)
Q Consensus       153 ~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~-~l~~~~l~~  231 (323)
                      ++.++.++|  +++++++.+++|+.+|+++|.+++++++||+|+ +|+++|+||..|++..+........ .........
T Consensus         2 ~~~~v~~~m--~r~v~~v~~~~~l~~a~~~m~~~~~~~lPVvd~-~~~lvG~it~~Dl~~~~~~~~~~~~~~~~~~~~~~   78 (156)
T d2yzqa1           2 KGVEIEPYY--QRYVSIVWEGTPLKAALKALLLSNSMALPVVDS-EGNLVGIVDETDLLRDSEIVRIMKSTELAASSEEE   78 (156)
T ss_dssp             GGCBSTTTS--BSCCCCEETTSBHHHHHHHHHTCSSSEEEEECT-TSCEEEEEEGGGGGGCGGGCC--------------
T ss_pred             CCCCHHHHh--cCCCeEECCcCcHHHHHHHHHHcCCCEEEEEeC-CCCceeEEeeeechhhhcccccccccccccchhhh
Confidence            567889999  789999999999999999999999999999995 7899999999999754332211100 000000000


Q ss_pred             hhHHHHH-HHHHHhhcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccc
Q 020637          232 HTISAWK-VGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDIL  310 (323)
Q Consensus       232 ~~i~~~~-~~~~~~~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl  310 (323)
                      +...... ..............+.++|+++++++.++++|.+|+.+|.++++++|||+|+  + |   +++||||++||+
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~tv~~~~~l~~~~~~m~~~~~~~lpVvd~--~-g---~lvGivt~~Dil  152 (156)
T d2yzqa1          79 WILESHPTLLFEKFELQLPNKPVAEIMTRDVIVATPHMTVHEVALKMAKYSIEQLPVIRG--E-G---DLIGLIRDFDLL  152 (156)
T ss_dssp             ------------------CCCBGGGTCBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEET--T-T---EEEEEEEHHHHG
T ss_pred             hhhhhhhhhhHHHhhhcccCCEeehhcccCceEECcccccHHHHHHHHHcCeeEEEEEeC--C-C---EEEEEEEHHHHH
Confidence            0000000 0000000001112245689999999999999999999999999999999995  3 5   899999999999


Q ss_pred             cc
Q 020637          311 KC  312 (323)
Q Consensus       311 ~~  312 (323)
                      ++
T Consensus       153 ~~  154 (156)
T d2yzqa1         153 KV  154 (156)
T ss_dssp             GG
T ss_pred             HH
Confidence            86

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.86  E-value=1.8e-22  Score=162.37  Aligned_cols=121  Identities=18%  Similarity=0.298  Sum_probs=100.3

Q ss_pred             cccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhH
Q 020637          155 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTI  234 (323)
Q Consensus       155 ~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i  234 (323)
                      .||.|+|  +++++++++++++.+|+++|.+++++++||+|+ +|+++|+||.+|++..+........        ..  
T Consensus         1 tt~~diM--~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~-~~~~~Giit~~Di~~~~~~~~~~~~--------~~--   67 (123)
T d1y5ha3           1 TTARDIM--NAGVTCVGEHETLTAAAQYMREHDIGALPICGD-DDRLHGMLTDRDIVIKGLAAGLDPN--------TA--   67 (123)
T ss_dssp             CCHHHHS--EETCCCEETTSBHHHHHHHHHHHTCSEEEEECG-GGBEEEEEEHHHHHHTTGGGTCCTT--------TS--
T ss_pred             CCHHHhc--CCCCcEECCcCcHHHHHHHHHHcCCCceEEEec-cchhhhhhhhhhHhhhhhhcCCCcc--------cc--
Confidence            3789999  678999999999999999999999999999995 6899999999999653221111000        00  


Q ss_pred             HHHHHHHHHhhcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637          235 SAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (323)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~  312 (323)
                       .+                .++|+++++++.+++++.+|+.+|.++++++|||+|+    |   +++||||.+||+++
T Consensus        68 -~v----------------~~im~~~~~~v~~~~~~~~~~~~m~~~~~~~lpVvd~----~---~lvGiit~~Dil~~  121 (123)
T d1y5ha3          68 -TA----------------GELARDSIYYVDANASIQEMLNVMEEHQVRRVPVISE----H---RLVGIVTEADIARH  121 (123)
T ss_dssp             -BH----------------HHHHTTCCCCEETTCCHHHHHHHHHHHTCSEEEEEET----T---EEEEEEEHHHHHHT
T ss_pred             -eE----------------EEEeeccceeeeecchHHHHHHHHHHcCceEEEEEEC----C---EEEEEEEHHHHHhh
Confidence             01                1258899999999999999999999999999999984    4   89999999999986

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=99.84  E-value=3.8e-21  Score=159.86  Aligned_cols=147  Identities=14%  Similarity=0.100  Sum_probs=108.8

Q ss_pred             ccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCC-CCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhh
Q 020637          154 THTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDF-KGRFVGVLSALDFILILRELGTNGSNLTEEELETH  232 (323)
Q Consensus       154 ~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~-~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~  232 (323)
                      ..+|.|+|  +++++++++++++.+|+++|.+++++++||+|+. ++.++|++|..|++..+............+..  .
T Consensus        10 ~~~V~diM--~~~~~~v~~~~tv~e~~~~l~~~~~~~~PVvd~~~~~~lvg~is~~dl~~~l~~~~~~~~~~~~~~~--~   85 (160)
T d2d4za3          10 NIQVGDIM--VRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRRISAYRRQPFEEM--L   85 (160)
T ss_dssp             SCBTTSSS--BSSCCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHHTTSSSCCCSC--C
T ss_pred             ceEHHHhc--CCCCeEECCCCcHHHHHHHHHhcCCCccccccccccccccccchHHHHHHHHhhccccccccchhhc--c
Confidence            57899999  5799999999999999999999999999999853 47999999999999876543211100000000  0


Q ss_pred             hHHHHHHHHHHhhcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637          233 TISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (323)
Q Consensus       233 ~i~~~~~~~~~~~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~  312 (323)
                      +............ ........++|.++++++.|+++|.+|+.+|.++++++|||+|+    |   +|+||||++||+++
T Consensus        86 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~tv~~~~~l~~~~~~m~~~~v~~l~V~d~----g---~lvGiIt~~Di~k~  157 (160)
T d2d4za3          86 TLEEIYRWEQREK-NVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTSM----G---KLVGVVALAEIQAA  157 (160)
T ss_dssp             BHHHHHHHHHHHT-TCBCCTTSSCEECCSCCBCTTCBHHHHHHHHHHHTCSEEEEEET----T---EEEEEEEHHHHHHH
T ss_pred             ccchhhhhhhhhc-ccccceeeecccCCCEEEcCCCCHHHHHHHHHHcCCeEEEEEEC----C---EEEEEEEHHHHHHH
Confidence            1111111111110 11123345689999999999999999999999999999999974    5   89999999999985

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

Probab=99.83  E-value=6.3e-21  Score=156.41  Aligned_cols=128  Identities=16%  Similarity=0.226  Sum_probs=103.7

Q ss_pred             cccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhH
Q 020637          155 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTI  234 (323)
Q Consensus       155 ~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i  234 (323)
                      .++.|+|  +++++++++++++.+|+++|.+++++++||+|+ +|+++|+||.+|+++.+..........  ..+.    
T Consensus         2 i~v~diM--~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVvd~-~~~~~Giit~~dl~~~~~~~~~~~~~~--~~~~----   72 (139)
T d2o16a3           2 IKVEDMM--TRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDA-NKKLLGIVSQRDLLAAQESSLQRSAQG--DSLA----   72 (139)
T ss_dssp             CBGGGTS--EESCCCBCTTSBHHHHHHHHHHHTCSEEEEECT-TCBEEEEEEHHHHHHHHHHHCC---------------
T ss_pred             EEHHHhC--cCCCeEECCcCCHHHHHHHHHHcCCCeeeeecc-cccccccccHHHHHHHHHhhhhhhhcc--cccc----
Confidence            4789999  578999999999999999999999999999995 789999999999988765432211000  0000    


Q ss_pred             HHHHHHHHHhhcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637          235 SAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (323)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~  312 (323)
                                    ....+.++|.+++++++++++|.+|+.+|.+++++++||+|+    |   +++||||.+||+++
T Consensus        73 --------------~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~----~---~lvGiit~~Dil~~  129 (139)
T d2o16a3          73 --------------FETPLFEVMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVAK----D---VLVGIITDSDFVTI  129 (139)
T ss_dssp             --------------CCCBHHHHSCSCEEEBCTTSBHHHHHHHHHHTTCSCEEEEET----T---EEEEEECHHHHHHH
T ss_pred             --------------cccchhHhhccccccccccchHHHHHHHHHHcCceEEEEEEC----C---EEEEEEEHHHHHHH
Confidence                          000112369999999999999999999999999999999984    4   89999999999998

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.82  E-value=2e-20  Score=153.33  Aligned_cols=130  Identities=18%  Similarity=0.266  Sum_probs=97.9

Q ss_pred             cccccc-cCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhh
Q 020637          155 HTVYEL-LPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHT  233 (323)
Q Consensus       155 ~~~~dv-mp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~  233 (323)
                      .+..|+ +..+.+++++++++|+.+|+++|.+++++++||+|+ +++++|+||.+|+++.+..........        .
T Consensus         6 ~~i~~l~~~~~~~v~tv~~~~~v~~a~~~m~~~~~~~ipVvd~-~~~~vG~it~~Di~~~~~~~~~~~~~~--------~   76 (140)
T d2nyca1           6 IPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDE-NGYLINVYEAYDVLGLIKGGIYNDLSL--------S   76 (140)
T ss_dssp             SBGGGSSCCBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECT-TCBEEEEEEHHHHHHHHHTC----CCS--------B
T ss_pred             CcHHHhCCccCCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEec-CCeEcceehhhHHHHHHhhcccccccc--------c
Confidence            566666 445789999999999999999999999999999995 789999999999988776432211000        0


Q ss_pred             HHHHHHHHHHhhcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637          234 ISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (323)
Q Consensus       234 i~~~~~~~~~~~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~  312 (323)
                      +   ......          ...+..++++|.++++|.+|+.+|.++++|++||+|+   .|   +++||||++||+++
T Consensus        77 ~---~~~~~~----------~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~VVd~---~~---~l~GiIt~~Dii~~  136 (140)
T d2nyca1          77 V---GEALMR----------RSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDD---VG---RLVGVLTLSDILKY  136 (140)
T ss_dssp             H---HHHHHH----------CC------CEECTTSBHHHHHHHHHHHTCSEEEEECT---TS---BEEEEEEHHHHHHH
T ss_pred             h---hhhhhh----------hhhcccccEEECCCCcHHHHHHHHHhcCeeEEEEEeC---CC---eEEEEEEHHHHHHH
Confidence            0   111110          1146778899999999999999999999999999985   35   89999999999986

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.82  E-value=1.4e-20  Score=152.11  Aligned_cols=121  Identities=19%  Similarity=0.281  Sum_probs=99.2

Q ss_pred             ccccccCC-CCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhH
Q 020637          156 TVYELLPD-SGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTI  234 (323)
Q Consensus       156 ~~~dvmp~-s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i  234 (323)
                      |+.|+|.. .+++++++++.++.+|+++|.+++++++||+|  +++++|+||.+|+++.+......   .  .+      
T Consensus         3 tV~dim~~k~~~v~~i~~~~tl~~a~~~m~~~~~~~vpV~~--~~~~vGiit~~Di~~~~~~~~~~---~--~~------   69 (127)
T d2rc3a1           3 TVKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMK--DEKLVGILTERDFSRKSYLLDKP---V--KD------   69 (127)
T ss_dssp             BHHHHHHHHCCCCCEECTTSBHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHHGGGSSSC---G--GG------
T ss_pred             cHHHHHccCCCccEEECCcCcHHHHHHHHHHcCCCEEEEEE--CCeEEEEEEccchhhhhhhhccc---c--cc------
Confidence            56777732 25899999999999999999999999999998  37999999999997644322110   0  00      


Q ss_pred             HHHHHHHHHhhcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637          235 SAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (323)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~  312 (323)
                                      ..+.++|+++++++.+++++.+|+.+|.+++++++||+|+    |   +++||||++||+++
T Consensus        70 ----------------~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~----~---~~~GiIt~~Dil~~  124 (127)
T d2rc3a1          70 ----------------TQVKEIMTRQVAYVDLNNTNEDCMALITEMRVRHLPVLDD----G---KVIGLLSIGDLVKD  124 (127)
T ss_dssp             ----------------SBGGGTSBCSCCCBCTTCBHHHHHHHHHHHTCSEEEEEET----T---EEEEEEEHHHHHHH
T ss_pred             ----------------eeEeeeccceeEEeccCccHHHHHHHHHHCCCcEEEEEEC----C---EEEEEEEHHHHHHH
Confidence                            0123479999999999999999999999999999999984    5   89999999999986

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.82  E-value=3.1e-20  Score=150.95  Aligned_cols=120  Identities=22%  Similarity=0.293  Sum_probs=101.3

Q ss_pred             cccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhH
Q 020637          155 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTI  234 (323)
Q Consensus       155 ~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i  234 (323)
                      ..+.|+|  +.+++++++++++.+|+++|.+++++++||+|+ +|+++|+||..|+++.+.....   ...         
T Consensus         5 ~pV~~im--~~~~~~v~~~~t~~~a~~~m~~~~~~~~~Vvd~-~~~~~Giit~~di~~~~~~~~~---~~~---------   69 (132)
T d2yzia1           5 APIKVYM--TKKLLGVKPSTSVQEASRLMMEFDVGSLVVIND-DGNVVGFFTKSDIIRRVIVPGL---PYD---------   69 (132)
T ss_dssp             SBGGGTC--BCCCCEECTTSBHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHHHTTTTCC---CTT---------
T ss_pred             CcHHHHc--CCCCeEECCcCcHHHHHHHHHHcCCcEEEEecc-cceeeeeeeHHHHHHHHhhccC---ccc---------
Confidence            3578899  689999999999999999999999999999995 7899999999999764432110   000         


Q ss_pred             HHHHHHHHHhhcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637          235 SAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (323)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~  312 (323)
                                      ..+.++|.++++++.+++++.+|+.+|.+++++++||+++    |   +++|+||.+||+++
T Consensus        70 ----------------~~v~~im~~~~~~v~~~~~~~~~~~~m~~~~~~~l~V~~~----~---~~vGivt~~Dil~a  124 (132)
T d2yzia1          70 ----------------IPVERIMTRNLITANVNTPLGEVLRKMAEHRIKHILIEEE----G---KIVGIFTLSDLLEA  124 (132)
T ss_dssp             ----------------SBGGGTCBCSCCEEETTSBHHHHHHHHHHHTCSEEEEEET----T---EEEEEEEHHHHHHH
T ss_pred             ----------------eeEeecccccccccCcchHHHHHHHHHHHcCCCEEEEEEC----C---EEEEEEEHHHHHHH
Confidence                            0122379999999999999999999999999999999863    5   89999999999998

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.81  E-value=4.6e-20  Score=151.87  Aligned_cols=122  Identities=20%  Similarity=0.284  Sum_probs=102.8

Q ss_pred             cccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhH
Q 020637          155 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTI  234 (323)
Q Consensus       155 ~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i  234 (323)
                      .++.|+|  +.+++++++++++.+|+++|.++++..+||+|+ +|+++|+||.+|++..+.......     ..      
T Consensus         3 m~v~dim--~~~~~~v~~~~tl~~a~~~m~~~~~~~~~V~d~-~~~~~Giit~~di~~~~~~~~~~~-----~~------   68 (142)
T d1pvma4           3 MRVEKIM--NSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDD-NGNDVGLLSERSIIKRFIPRNKKP-----DE------   68 (142)
T ss_dssp             CBGGGTS--BTTCCEEETTCBHHHHHHHHHHHTCCEEEEECT-TSCEEEEEEHHHHHHHTGGGCCCG-----GG------
T ss_pred             EEHHHhC--CCCCcEECCcCcHHHHHHHHHHCCCceEeeecc-CCcccceEEeechhhhhhhhcccc-----cc------
Confidence            4688999  688999999999999999999999999999995 689999999999975443221110     00      


Q ss_pred             HHHHHHHHHhhcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637          235 SAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (323)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~  312 (323)
                                      ..++++|.++++++.++++|.+|+.+|.+++++++||+|+  + |   +++|+||..||+++
T Consensus        69 ----------------~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~--~-g---~l~Giit~~Dil~~  124 (142)
T d1pvma4          69 ----------------VPIRLVMRKPIPKVKSDYDVKDVAAYLSENGLERCAVVDD--P-G---RVVGIVTLTDLSRY  124 (142)
T ss_dssp             ----------------SBGGGTSBSSCCEEETTCBHHHHHHHHHHHTCSEEEEECT--T-C---CEEEEEEHHHHTTT
T ss_pred             ----------------cccccccccccccccchhhHHHHHHHHHHcCCcEEEEEec--C-C---EEEEEEEHHHHHHH
Confidence                            0123479999999999999999999999999999999985  3 5   89999999999998

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein YkuL
species: Bacillus subtilis [TaxId: 1423]

Probab=99.81  E-value=9.2e-21  Score=153.95  Aligned_cols=126  Identities=17%  Similarity=0.145  Sum_probs=102.3

Q ss_pred             cccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhH
Q 020637          155 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTI  234 (323)
Q Consensus       155 ~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i  234 (323)
                      .+|.++|..+.+|+++++++++.+|+++|.+++++++||+|+ +|+++|+||.+|+++.+......    ..+.....+ 
T Consensus         2 ~tv~~~mip~~~v~~v~~~~tl~~a~~~m~~~~~s~~pVvd~-~~~~vGiit~~di~~~~~~~~~~----~~~~~~~~~-   75 (132)
T d1yava3           2 ATVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDP-SYRLHGLIGTNMIMNSIFGLERI----EFEKLDQIT-   75 (132)
T ss_dssp             CBHHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECT-TCBEEEEEEHHHHHHHHBCSSSB----CGGGTTTSB-
T ss_pred             CCHHHccccccceEEEcCCCCHHHHHHHHHhhCCCceEEeec-ccccccEEEcchhHHHhhccccc----ccccccccc-
Confidence            578999988899999999999999999999999999999995 68999999999998765422111    111111111 


Q ss_pred             HHHHHHHHHhhcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637          235 SAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (323)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~  312 (323)
                                        +.++|.++++++.+++++.+|+.+|.+++  .+||+|+  + |   +++||||++||+++
T Consensus        76 ------------------v~~~m~~~~~~v~~~~~l~~~~~~~~~~~--~l~Vvd~--~-~---~~~Givt~~dil~~  127 (132)
T d1yava3          76 ------------------VEEVMLTDIPRLHINDPIMKGFGMVINNG--FVCVEND--E-Q---VFEGIFTRRVVLKE  127 (132)
T ss_dssp             ------------------HHHHSBCSCCEEETTSBHHHHHHHTTTCS--EEEEECT--T-C---BEEEEEEHHHHHHH
T ss_pred             ------------------ccccccccccccccchhHHHHHHHHHhCC--EEEEEcc--C-C---EEEEEEEHHHHHHH
Confidence                              11258899999999999999999998764  5999985  3 5   89999999999998

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.81  E-value=7.8e-20  Score=146.15  Aligned_cols=117  Identities=22%  Similarity=0.295  Sum_probs=98.7

Q ss_pred             cccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHH
Q 020637          157 VYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISA  236 (323)
Q Consensus       157 ~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~  236 (323)
                      +.|+|  +.+++++++++|+.+|++.|.+++++.+||.|  +++++|+||.+|+++.+..-..    +     ...   .
T Consensus         2 V~diM--~~~~~~v~~~~sl~ea~~~~~~~~~~~~~V~~--~~~~~Gvit~~Di~~~l~~~~~----~-----~~~---~   65 (120)
T d1pbja3           2 VEDVM--VTDVDTIDITASLEDVLRNYVENAKGSSVVVK--EGVRVGIVTTWDVLEAIAEGDD----L-----AEV---K   65 (120)
T ss_dssp             HHHHC--BCSCCEEETTCBHHHHHHHHHHHCCCEEEEEE--TTEEEEEEEHHHHHHHHHHTCC----T-----TTS---B
T ss_pred             hHHhC--CCCCeEECCcCcHHHHHHHHHHcCceEEEEEe--CCcEEEEEEeeecccccccccc----c-----cce---e
Confidence            56889  57899999999999999999999999999997  3799999999999876653211    1     000   0


Q ss_pred             HHHHHHHhhcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637          237 WKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (323)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~  312 (323)
                      +.                ++|+++++++.+++++.+|+.+|.+++++++||+|+    |   +++|+||.+||++|
T Consensus        66 v~----------------~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~l~V~~~----~---~l~Givt~~Dil~A  118 (120)
T d1pbja3          66 VW----------------EVMERDLVTISPRATIKEAAEKMVKNVVWRLLVEED----D---EIIGVISATDILRA  118 (120)
T ss_dssp             HH----------------HHCBCGGGEECTTSCHHHHHHHHHHHTCSEEEEEET----T---EEEEEEEHHHHHHH
T ss_pred             Ee----------------eecccccccccchhHHHHHHHHHHHcCCeEEEEEEC----C---EEEEEEEHHHHHhc
Confidence            11                258999999999999999999999999999999874    5   89999999999986

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.81  E-value=6.8e-20  Score=147.84  Aligned_cols=122  Identities=15%  Similarity=0.244  Sum_probs=103.5

Q ss_pred             ccccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhh
Q 020637          152 LSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELET  231 (323)
Q Consensus       152 l~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~  231 (323)
                      |...++.|+|  ++++++++++.++.+|+++|.+++++.+||+|+  ++++|+||..|+++.+..-..    ..      
T Consensus         1 l~~~~V~d~m--~~~~v~v~~~~tl~~a~~~m~~~~~~~~pV~d~--~~~~Givt~~dl~~~~~~~~~----~~------   66 (127)
T d2ef7a1           1 MEEEIVKEYM--KTQVISVTKDAKLNDIAKVMTEKNIGSVIVVDG--NKPVGIITERDIVKAIGKGKS----LE------   66 (127)
T ss_dssp             CCCCBGGGTS--BCSCCEEETTCBHHHHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHHHHTTCC----TT------
T ss_pred             CCccCHHHhC--CCCCeEECCcCcHHHHHHHHHHcCCceEEeecc--cchhhhcchhHHHHHHHhhcc----cc------
Confidence            4567889999  679999999999999999999999999999984  699999999999876542111    00      


Q ss_pred             hhHHHHHHHHHHhhcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeecccccc
Q 020637          232 HTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (323)
Q Consensus       232 ~~i~~~~~~~~~~~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~  311 (323)
                                         ..+.++|.++++++.++++|.+|+.+|.+++++++||+|+   .|   +++|+||.+||++
T Consensus        67 -------------------~~v~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~---~~---~lvGiit~~Dll~  121 (127)
T d2ef7a1          67 -------------------TKAEEFMTASLITIREDSPITGALALMRQFNIRHLPVVDD---KG---NLKGIISIRDITR  121 (127)
T ss_dssp             -------------------CBGGGTSEECCCCEETTSBHHHHHHHHHHHTCSEEEEECT---TS---CEEEEEEHHHHHH
T ss_pred             -------------------chhhhhhhhhccccccccchhHHHHHHHHcCceEEEEEeC---CC---eEEEEEEHHHHHH
Confidence                               0012368899999999999999999999999999999985   35   8999999999998


Q ss_pred             c
Q 020637          312 C  312 (323)
Q Consensus       312 ~  312 (323)
                      +
T Consensus       122 ~  122 (127)
T d2ef7a1         122 A  122 (127)
T ss_dssp             H
T ss_pred             H
Confidence            7

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

Probab=99.80  E-value=4.9e-20  Score=151.36  Aligned_cols=138  Identities=15%  Similarity=0.182  Sum_probs=101.9

Q ss_pred             ccccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhh
Q 020637          152 LSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELET  231 (323)
Q Consensus       152 l~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~  231 (323)
                      |+...+.++|  +.+++++.+++++.+|++.|.+++++++||+|+ +++++|+||..||++.+..........  ...  
T Consensus         1 mk~~~v~~~m--~~~p~~v~~~~~v~~a~~~m~~~~~~~ipVvd~-~~~~vGiis~~Dl~~~~~~~~~~~~~~--~~~--   73 (145)
T d1o50a3           1 MKVKDVCKLI--SLKPTVVEEDTPIEEIVDRILEDPVTRTVYVAR-DNKLVGMIPVMHLLKVSGFHFFGFIPK--EEL--   73 (145)
T ss_dssp             CBHHHHTTSS--CCCCEEECTTCBHHHHHHHHHHSTTCCEEEEEE-TTEEEEEEEHHHHHHHHHHHHHCCCC--------
T ss_pred             CcceEhHHhC--CCCCEEECCcCcHHHHHHHHHHcCCceEEEecc-Ccceeeeeccchhhhhhhcccccccch--hHH--
Confidence            3456788889  578899999999999999999999999999995 689999999999988765322111000  000  


Q ss_pred             hhHHHHHHHHHHhhcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeecccccc
Q 020637          232 HTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (323)
Q Consensus       232 ~~i~~~~~~~~~~~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~  311 (323)
                           ...   ... ......+.++|. +++++.+++++.+|+.+|.+++++++||+|+   +|   +++|+||++||++
T Consensus        74 -----~~~---~~~-~~~~~~~~~~~~-~~~~i~~~~~l~~a~~~m~~~~i~~lpVVd~---~g---~i~Gvit~~dil~  137 (145)
T d1o50a3          74 -----IRS---SMK-RLIAKNASEIML-DPVYVHMDTPLEEALKLMIDNNIQEMPVVDE---KG---EIVGDLNSLEILL  137 (145)
T ss_dssp             -----------CCC-CCSSCBHHHHCB-CCCCBCTTSBHHHHHHHHHHHTCSEEEEECT---TS---CEEEEEEHHHHHH
T ss_pred             -----HHh---hhh-hccccCHHHHcC-CCEEEcCCCCHHHHHHHHHHcCceEEEEEeC---CC---eEEEEEEHHHHHH
Confidence                 000   000 000000112454 4578999999999999999999999999985   35   8999999999999


Q ss_pred             c
Q 020637          312 C  312 (323)
Q Consensus       312 ~  312 (323)
                      +
T Consensus       138 ~  138 (145)
T d1o50a3         138 A  138 (145)
T ss_dssp             H
T ss_pred             H
Confidence            8

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.79  E-value=1.1e-19  Score=146.61  Aligned_cols=116  Identities=19%  Similarity=0.268  Sum_probs=95.0

Q ss_pred             CCeEEEecchhHHHHHHHHHHCCCCeeeeEeC-CCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHHHHHHHHH
Q 020637          165 GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDD-FKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQ  243 (323)
Q Consensus       165 ~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~-~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~~~  243 (323)
                      .+++++.++++|.+|+++|.+++++++||+|+ ..++++|+||.+|++...   ..+ ..                    
T Consensus         5 ~dpvtv~~~~tv~~a~~~m~~~~~~~~pVvD~~~~~~lvGivt~~Di~~~~---~~~-~~--------------------   60 (126)
T d1zfja4           5 IDPFFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMRFIS---DYN-AP--------------------   60 (126)
T ss_dssp             SSCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTTCBEEEEEEHHHHHHCS---CSS-SB--------------------
T ss_pred             eCceEECCCCCHHHHHHHHHHhCCCcEEEEeeccCCeEEEEeEHHHHHHhh---ccC-Cc--------------------
Confidence            46789999999999999999999999999985 257999999999985321   110 00                    


Q ss_pred             hhcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccccccCcc
Q 020637          244 LNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCKHFLHS  318 (323)
Q Consensus       244 ~~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~~~f~~~  318 (323)
                              ....+|+.+++++.+++++.+|+.+|.++++++|||+|+   .|   +|+||||.+||+++.+|+++
T Consensus        61 --------~~~~~~~~~~~~~~~~~~l~~a~~~m~~~~~~~lpVVd~---~g---~lvGiiT~~Dil~~~~~p~a  121 (126)
T d1zfja4          61 --------ISEHMTSEHLVTAAVGTDLETAERILHEHRIEKLPLVDN---SG---RLSGLITIKDIEKVIEFPHA  121 (126)
T ss_dssp             --------TTTSCCCSCCCCEETTCCHHHHHHHHHHTTCSEEEEECT---TS---BEEEEEEHHHHHHHHHCTTC
T ss_pred             --------eeeeeeccceeecCCCCCHHHHHHHHHhcCCcEEEEEcC---CC---eEEEEEEHHHHHHHhhCccc
Confidence                    011257889999999999999999999999999999985   35   89999999999999544443

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.78  E-value=2.5e-19  Score=148.94  Aligned_cols=123  Identities=15%  Similarity=0.229  Sum_probs=99.1

Q ss_pred             CCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHHHHHHH
Q 020637          162 PDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGK  241 (323)
Q Consensus       162 p~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~  241 (323)
                      ++..+++++++++|+.+|+++|.+++++++||+|+ +++++|+||.+|++..+......       ..+ .+   +.+..
T Consensus         9 g~~~~vv~v~~~~~v~~a~~~m~~~~~~~lpVvd~-~~~~vG~it~~Dl~~~~~~~~~~-------~~~-~~---v~~~~   76 (153)
T d2ooxe2           9 GTWSNLATASMETKVYDVIKMLAEKNISAVPIVNS-EGTLLNVYESVDVMHLIQDGDYS-------NLD-LS---VGEAL   76 (153)
T ss_dssp             SBCSSCCCBCTTSBHHHHHHHHHHTTCSEEEEECG-GGBEEEEEEHHHHHHHHGGGCGG-------GGG-SB---HHHHH
T ss_pred             CCCCCCeEEeCcCcHHHHHHHHHHcCcceEeeecc-cceEEEEEEeeeeeehhcccccc-------ccc-cc---hhhhe
Confidence            34568999999999999999999999999999995 78999999999998766532211       010 11   12222


Q ss_pred             HHhhcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637          242 LQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (323)
Q Consensus       242 ~~~~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~  312 (323)
                      ..          ...|..+++++.++++|.+|+.+|.+++++++||+|+   +|   +++||||++||+++
T Consensus        77 ~~----------~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~---~~---~lvGivT~~Dil~~  131 (153)
T d2ooxe2          77 LK----------RPANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDE---NL---KLEGILSLADILNY  131 (153)
T ss_dssp             HT----------SCCCSSCCCEECTTCBHHHHHHHHHHSCCSEEEEECT---TC---BEEEEEEHHHHHHH
T ss_pred             ee----------eecccCCCeEECCCCcHHHHHHhhhhceeeEEEEEcC---CC---EEEEEEEHHHHHHH
Confidence            11          1257888999999999999999999999999999985   35   89999999999998

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.78  E-value=2.5e-19  Score=146.37  Aligned_cols=126  Identities=17%  Similarity=0.263  Sum_probs=102.2

Q ss_pred             ccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHH
Q 020637          156 TVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTIS  235 (323)
Q Consensus       156 ~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~  235 (323)
                      ++.++|  +.+++++++++|+.+|+++|.+++++++||+|+ +++++|++|..|+++.+....... ..  ..       
T Consensus         3 ~V~~iM--t~~v~~v~~~~tl~~a~~~m~~~~~~~ipVv~~-~~~~~g~i~~~di~~~~~~~~~~~-~~--~~-------   69 (141)
T d3ddja1           3 PVKVFM--STKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDD-DNKVVGIVTVVNAIKQLAKAVDKL-DP--DY-------   69 (141)
T ss_dssp             BHHHHS--BCSCCCEETTSBHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHHHHHHHHHHT-CT--HH-------
T ss_pred             eeHHhC--cCCCeEEcCcCcHHHHHHHHHHcCCCeeecccc-cCccccccccccchhhhhcccccc-cc--cc-------
Confidence            567888  578999999999999999999999999999995 789999999999987654321100 00  00       


Q ss_pred             HHHHHHHHhhcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637          236 AWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (323)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~  312 (323)
                       ...           ..++++|+++++++.+++++.+|+.+|.+++++++||+|+   +|   +++|+||.+||+++
T Consensus        70 -~~~-----------~~v~~im~~~~~~v~~~~~~~~~~~~m~~~~~~~l~Vvd~---~~---~~iGiIt~~Dil~~  128 (141)
T d3ddja1          70 -FYG-----------KVVKDVMVTNLVTIDELASVNRAAAEMIVKRIGSLLILNK---DN---TIRGIITERDLLIA  128 (141)
T ss_dssp             -HHT-----------CBHHHHSBCCCCBCCTTSBHHHHHHHHHHHTCSEEEEECT---TS---CEEEEEEHHHHHHH
T ss_pred             -ccC-----------CCHHHHhCcccccccccchhhHHHHHHHHcCCCEEEEEcc---CC---EEEEEEEHHHHHHH
Confidence             000           0122369999999999999999999999999999999985   35   89999999999998

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.78  E-value=2.5e-19  Score=147.34  Aligned_cols=129  Identities=19%  Similarity=0.286  Sum_probs=99.6

Q ss_pred             cccccc-CCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhH
Q 020637          156 TVYELL-PDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTI  234 (323)
Q Consensus       156 ~~~dvm-p~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i  234 (323)
                      +..|++ +...+++++.+++|+.+|+++|.+++++++||+|+ +++++|+||.+|++..+......  ..     . .. 
T Consensus        10 ~l~~l~i~~~~~v~~v~~~~tv~eal~~m~~~~~~~lpVvd~-~~~~~Gvit~~di~~~l~~~~~~--~~-----~-~~-   79 (145)
T d2v8qe1          10 SLEELQIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDE-KGRVVDIYSKFDVINLAAEKTYN--NL-----D-VS-   79 (145)
T ss_dssp             BHHHHTCSBCSSCCCEETTCBHHHHHHHHHHHCCSEEEEECT-TSBEEEEEEGGGTGGGGGSSCCC--CC-----S-SB-
T ss_pred             CHHHHcCCCCCCceEEcCcCcHHHHHHHHHHcCCCccccccc-CCceEEEEEcchhhhhhhccccc--ch-----h-hh-
Confidence            444443 22467999999999999999999999999999995 78999999999996544321111  01     0 00 


Q ss_pred             HHHHHHHHHhhcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637          235 SAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (323)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~  312 (323)
                        +.+...          ....|..+++++.++++|.+|+.+|.++++|++||+|+   .|   +++||||++||+++
T Consensus        80 --v~~~~~----------~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~---~g---~l~GiVt~~dii~~  139 (145)
T d2v8qe1          80 --VTKALQ----------HRSHYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDE---HD---VVKGIVSLSDILQA  139 (145)
T ss_dssp             --HHHHGG----------GCCSCCCSCCEECTTSBHHHHHHHHHHHTCSEEEEECT---TS---BEEEEEEHHHHHHH
T ss_pred             --hhhccc----------hhhhccCCCeEECCCCcHHHHHHHHHHcCceEEEEEcc---CC---EEEEEEEHHHHHHH
Confidence              111111          11258889999999999999999999999999999985   35   89999999999987

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.77  E-value=1.7e-19  Score=146.37  Aligned_cols=131  Identities=10%  Similarity=0.077  Sum_probs=102.1

Q ss_pred             ccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHH
Q 020637          156 TVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTIS  235 (323)
Q Consensus       156 ~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~  235 (323)
                      +|.|+|  .++++++++++++.+|+++|.++|++++||+|+   +++|++|..|+++.+....... ..          .
T Consensus         2 ~V~~lM--~~~~~~v~~~~tl~~a~~~m~~~~~~~l~V~d~---~lvg~~~~~~~~~~~~~~~~~~-~~----------~   65 (135)
T d3ddja2           2 NIETLM--IKNPPILSKEDRLGSAFKKINEGGIGRIIVANE---KIEGLLTTRDLLSTVESYCKDS-CS----------Q   65 (135)
T ss_dssp             SGGGTC--EESCCEECTTSBHHHHHHHTTGGGCCEEEEESS---SEEEEEEHHHHHGGGTTCC----CC----------H
T ss_pred             EeeEEe--eCCCeEECCCCcHHHHHHHHHHhCCeEEEEEec---ceeceeeccchhhhhccccccc-hh----------h
Confidence            678999  467899999999999999999999999999974   6999999999975443211100 00          0


Q ss_pred             HHHHHHHHhhcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc-cc
Q 020637          236 AWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC-KH  314 (323)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~-~~  314 (323)
                      ........       ..++++|+.+++++.+++++.+|+.+|.+++++++||+|+   .|   +++||||.+||+++ ..
T Consensus        66 ~~~~~~~~-------~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~---~g---~lvGiit~~Dil~~~~~  132 (135)
T d3ddja2          66 GDLYHIST-------TPIIDYMTPNPVTVYNTSDEFTAINIMVTRNFGSLPVVDI---ND---KPVGIVTEREFLLLYKD  132 (135)
T ss_dssp             HHHHHHHT-------SBGGGTSEESCCCEETTSCHHHHHHHHHHHTCSEEEEECT---TS---CEEEEEEHHHHGGGGGG
T ss_pred             hhcccccc-------CCHHHHhCCccceEEeccccchhhhhhhhcceeEEEEEeC---CC---EEEEEEEHHHHHHHHHH
Confidence            00010000       1234589999999999999999999999999999999985   35   89999999999998 55


Q ss_pred             c
Q 020637          315 F  315 (323)
Q Consensus       315 f  315 (323)
                      +
T Consensus       133 l  133 (135)
T d3ddja2         133 L  133 (135)
T ss_dssp             S
T ss_pred             h
Confidence            4

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.77  E-value=4e-19  Score=143.60  Aligned_cols=120  Identities=17%  Similarity=0.155  Sum_probs=99.5

Q ss_pred             cccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeC-CCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhh
Q 020637          155 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDD-FKGRFVGVLSALDFILILRELGTNGSNLTEEELETHT  233 (323)
Q Consensus       155 ~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~-~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~  233 (323)
                      .++.|+|  +++++++.+++++.+|+++|.++++.++||++. +.++++|++|..|+++.+.......      .     
T Consensus         1 ~~V~dim--~~~~v~v~~~~tl~ea~~~m~~~~~~~~~Vv~~d~~~~~iGi~~~~dl~~~~~~~~~~~------~-----   67 (131)
T d2riha1           1 IRTSELL--KRPPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQRLDLD------G-----   67 (131)
T ss_dssp             CBGGGGC--CSCCEEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEEEEHHHHHHHHHTTCCTT------S-----
T ss_pred             CCHHHhc--cCCCEEECCCCcHHHHHHHHHHhCCCcEEEEEEcCCCEEEEEEeeeccccccccccccc------c-----
Confidence            3688999  678999999999999999999999999999953 3589999999999987654321100      0     


Q ss_pred             HHHHHHHHHHhhcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637          234 ISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (323)
Q Consensus       234 i~~~~~~~~~~~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~  312 (323)
                                         ....|..++.++.+++++.+|+.+|.+++++++||+|+   .|   +++||||+.||+++
T Consensus        68 -------------------~~~~~~~~~~~v~~~~~~~~a~~~m~~~~i~~lpVvd~---~g---~l~Giit~~Dll~~  121 (131)
T d2riha1          68 -------------------PAMPIANSPITVLDTDPVHVAAEKMRRHNIRHVVVVNK---NG---ELVGVLSIRDLCFE  121 (131)
T ss_dssp             -------------------BSGGGCBCCCEEETTSBHHHHHHHHHHHTCSEEEEECT---TS---CEEEEEEHHHHHSC
T ss_pred             -------------------ccccccccceeEeeecchHHHHHHHHHCCeEEEEEEcC---CC---eEEEEEEHHHHHHH
Confidence                               00124566789999999999999999999999999985   35   89999999999998

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.77  E-value=9.1e-20  Score=146.26  Aligned_cols=114  Identities=16%  Similarity=0.261  Sum_probs=84.4

Q ss_pred             ccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHH
Q 020637          156 TVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTIS  235 (323)
Q Consensus       156 ~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~  235 (323)
                      ++.|+|  +++++++++++++.+|+++|.++++.++||+|+ +|+++|+||.+|++....                    
T Consensus         2 ~v~diM--~~~~v~v~~~~~v~~a~~~m~~~~~~~~~Vvd~-~~~~~G~it~~dl~~~~~--------------------   58 (122)
T d2yzqa2           2 RVKTIM--TQNPVTITLPATRNYALELFKKYKVRSFPVVNK-EGKLVGIISVKRILVNPD--------------------   58 (122)
T ss_dssp             BHHHHS--EESCCCEESSCC------------CCEEEEECT-TCCEEEEEESSCC-------------------------
T ss_pred             Cccccc--CCCCEEECCcCcHHHHHHHHHHcCCcEEEEEec-cccchhhhhcchhhhhhc--------------------
Confidence            577889  568999999999999999999999999999995 799999999999853110                    


Q ss_pred             HHHHHHHHhhcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637          236 AWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (323)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~  312 (323)
                        ..            .+.++|.++++++.+++++.+|+.+|.+++++++||+|+   .|   +++|+||.+||+++
T Consensus        59 --~~------------~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~---~~---~liGiit~~dil~~  115 (122)
T d2yzqa2          59 --EE------------QLAMLVKRDVPVVKENDTLKKAAKLMLEYDYRRVVVVDS---KG---KPVGILTVGDIIRR  115 (122)
T ss_dssp             -------------------CCCBSCCCEEETTSBHHHHHHHHHHHTCSEEEEECT---TS---CEEEEEEHHHHHHH
T ss_pred             --cc------------chhhccccceeecchhhHHHHHHHHHHHcCcEEEEEEeC---CC---EEEEEEEHHHHHHH
Confidence              00            012368899999999999999999999999999999985   35   89999999999986

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.76  E-value=1e-18  Score=141.12  Aligned_cols=114  Identities=21%  Similarity=0.298  Sum_probs=96.8

Q ss_pred             ccccccCCCCCeEEEecchhHHHHHHHHHHC-----CCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhh
Q 020637          156 TVYELLPDSGKVTALDVNLAVKQAFHVLYEQ-----GLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELE  230 (323)
Q Consensus       156 ~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~-----~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~  230 (323)
                      |+..+|  +++++++.+++++.+|++.|+++     ++..+||+|+ .++++|+++..|++.      ... ..      
T Consensus         2 taG~iM--~~d~i~v~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~-~~~l~G~v~~~~l~~------~~~-~~------   65 (127)
T d2ouxa2           2 TAGAIM--TTEFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQ-ENHLVGVISLRDLIV------NDD-DT------   65 (127)
T ss_dssp             BHHHHC--BSCCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECT-TCBEEEEEEHHHHTT------SCT-TS------
T ss_pred             ChhHhC--CCCcEEECCCCcHHHHHHHhHhhcccccceeeeEEEec-CCeEEEEEEeecccc------ccc-cE------
Confidence            677899  68999999999999999999988     4789999995 789999999998741      100 00      


Q ss_pred             hhhHHHHHHHHHHhhcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccc
Q 020637          231 THTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDIL  310 (323)
Q Consensus       231 ~~~i~~~~~~~~~~~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl  310 (323)
                           .+.                ++|+++++++.|++++.+|+.+|.++++++|||+|+   +|   +|+||||..||+
T Consensus        66 -----~v~----------------~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lPVVD~---~g---~lvGiIt~~Dil  118 (127)
T d2ouxa2          66 -----LIA----------------DILNERVISVHVGDDQEDVAQTIRDYDFLAVPVTDY---DD---HLLGIVTVDDII  118 (127)
T ss_dssp             -----BHH----------------HHSBSCCCCEETTSBHHHHHHHHHHHTCSEEEEECT---TC---BEEEEEEHHHHH
T ss_pred             -----Ehh----------------hhccCCCccCCCCCCHHHHHHHHHHhCCEEEEEEeC---CC---EEEEEEEHHHHH
Confidence                 011                269999999999999999999999999999999985   35   899999999999


Q ss_pred             cc
Q 020637          311 KC  312 (323)
Q Consensus       311 ~~  312 (323)
                      ++
T Consensus       119 ~~  120 (127)
T d2ouxa2         119 DV  120 (127)
T ss_dssp             HH
T ss_pred             HH
Confidence            76

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

Probab=99.75  E-value=4.3e-19  Score=146.47  Aligned_cols=114  Identities=19%  Similarity=0.306  Sum_probs=97.9

Q ss_pred             ccccccCCCCCeEEEecchhHHHHHHHHHHCC-----CCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhh
Q 020637          156 TVYELLPDSGKVTALDVNLAVKQAFHVLYEQG-----LPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELE  230 (323)
Q Consensus       156 ~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~-----i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~  230 (323)
                      |+.++|  +++++++.+++||.+|++.|++++     +..+||+|+ .|+++|+|+.+|++.    . . ..        
T Consensus         2 taG~iM--~~~~itv~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~-~~~l~G~v~~~dl~~----~-~-~~--------   64 (144)
T d2yvxa2           2 EAGGLM--TPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDE-KGRLKGVLSLRDLIV----A-D-PR--------   64 (144)
T ss_dssp             SSGGGC--BSCCCEECSSCBHHHHHHHSSSSCTTSSCSSBCEEBCT-TCBBCCBCBHHHHTT----S-C-TT--------
T ss_pred             Cccccc--CCCCEEECCCCcHHHHHHHHHHhcccccceeeeEEecC-CCCEecccchhhhhh----c-c-cc--------
Confidence            567899  679999999999999999998884     889999995 799999999999832    0 0 00        


Q ss_pred             hhhHHHHHHHHHHhhcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccc
Q 020637          231 THTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDIL  310 (323)
Q Consensus       231 ~~~i~~~~~~~~~~~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl  310 (323)
                                          ..+.++|+++++++.|++++.+|+.+|.+++++++||||+  + |   +|+||||.+||+
T Consensus        65 --------------------~~v~~im~~~~~~v~~~~~~~~a~~~m~~~~~~~lPVVd~--~-g---~lvGiIt~~Dil  118 (144)
T d2yvxa2          65 --------------------TRVAEIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDE--E-G---RLVGIVTVDDVL  118 (144)
T ss_dssp             --------------------CBSTTTSBSSCCCEESSCCHHHHHHHHHHSCCSEEEEECS--S-C---BEEEEEEHHHHH
T ss_pred             --------------------cchHHhcccCCccCCCCChHHHHHHHHHHcCCCEEEEEeE--C-C---EEEEEEEHHHHH
Confidence                                0123479999999999999999999999999999999985  3 5   899999999999


Q ss_pred             cc
Q 020637          311 KC  312 (323)
Q Consensus       311 ~~  312 (323)
                      ++
T Consensus       119 ~~  120 (144)
T d2yvxa2         119 DV  120 (144)
T ss_dssp             HH
T ss_pred             HH
Confidence            88

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=4.8e-19  Score=149.46  Aligned_cols=153  Identities=10%  Similarity=0.072  Sum_probs=102.4

Q ss_pred             ccccccCCC--CC--eEEEecchhHHHHHHHHHHCCCCeeeeEeC-CCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhh
Q 020637          156 TVYELLPDS--GK--VTALDVNLAVKQAFHVLYEQGLPMVPLWDD-FKGRFVGVLSALDFILILRELGTNGSNLTEEELE  230 (323)
Q Consensus       156 ~~~dvmp~s--~~--vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~-~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~  230 (323)
                      .+.|+|..-  .+  ++.+..+.|+.+|.++|.+++++++||+++ +.++++|+||.+|++..+................
T Consensus         4 ~a~DiM~p~~~~~~~~v~~~~~~tv~~a~~ll~~~~~~~~PVV~~~~~~~lvG~is~~dl~~~l~~~~~~~~~~~~~~~~   83 (169)
T d2j9la1           4 LAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENARKKQDGVVSTSII   83 (169)
T ss_dssp             BHHHHSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHTSCSCCCTTCEE
T ss_pred             chhhhcCcCCCCCceEEECCCcCCHHHHHHHHHHcCCCceeeeecCCCCeEEEEEEhHHHHHHHhcccccccccccchhh
Confidence            456777421  11  355778899999999999999999999953 4679999999999998775432221111000000


Q ss_pred             hhhHHHHHHHHHHhhcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccc
Q 020637          231 THTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDIL  310 (323)
Q Consensus       231 ~~~i~~~~~~~~~~~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl  310 (323)
                      .........    .........++++|.++++++.|+++|.+|+.+|.+++++++||+|+    |   +++||||++||+
T Consensus        84 ~~~~~~~~~----~~~~~~~~~v~~im~~~~~tv~~~~~l~~v~~~~~~~~~~~l~V~d~----g---~lvGiIt~~Dil  152 (169)
T d2j9la1          84 YFTEHSPPL----PPYTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTHN----G---RLLGIITKKDVL  152 (169)
T ss_dssp             ECSSSCCCC----CTTCCCCEECGGGEESSCCEEETTSBHHHHHHHHHHHTCSEEEEEET----T---EEEEEEEHHHHH
T ss_pred             hhcccchhh----hhccccccchhhhccCCCEEECCCCcHHHHHHHHHhcCceEEEEEEC----C---EEEEEEEHHHHH
Confidence            000000000    00000011235689999999999999999999999999999999974    5   899999999999


Q ss_pred             cc--cccCccc
Q 020637          311 KC--KHFLHSL  319 (323)
Q Consensus       311 ~~--~~f~~~~  319 (323)
                      ++  ....+.+
T Consensus       153 ~~l~~~~~~~~  163 (169)
T d2j9la1         153 KHIAQMANQDP  163 (169)
T ss_dssp             HHHHHHCC---
T ss_pred             HHHHHHhcCCc
Confidence            99  3444443

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.73  E-value=3.8e-20  Score=148.23  Aligned_cols=113  Identities=21%  Similarity=0.271  Sum_probs=59.6

Q ss_pred             CCeEEEecchhHHHHHHHHHHCCCCeeeeEeC--CCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHHHHHHHHH
Q 020637          165 GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDD--FKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKL  242 (323)
Q Consensus       165 ~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~--~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~~~~~~~~  242 (323)
                      ++++++.++++|.+|+++|.+++++++||+|+  ..++++||||.+|+.....   .        .++       ... .
T Consensus         4 ~~pvtv~~~~tl~da~~~m~~~~i~~~pVvd~~~~~~~lvGivT~~Di~~~~~---~--------~~~-------~~~-~   64 (120)
T d1jr1a4           4 TDPVVLSPKDRVRDVFEAKARHGFCGIPITDTGRMGSRLVGIISSRDIDFLKE---E--------EHD-------RFL-E   64 (120)
T ss_dssp             CTTCC----CCCC--CCBC---------------CTTCCC----------------------------------------
T ss_pred             cCCEEECCcCCHHHHHHHHHHhCCCeEEEeeccccCCeEeeeeeeeeeeehhc---c--------ccC-------cee-E
Confidence            56689999999999999999999999999984  2579999999999732111   0        000       000 0


Q ss_pred             HhhcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637          243 QLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (323)
Q Consensus       243 ~~~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~  312 (323)
                      .          ...|..+++++.+++++.+|+.+|.++++++|||+|+   .|   +|+||||++||+++
T Consensus        65 ~----------~~~~~~~~~~v~~~~~~~~a~~~m~~~~i~~lpVVd~---~~---~lvGiiT~~Di~k~  118 (120)
T d1jr1a4          65 E----------IMTKREDLVVAPAGITLKEANEILQRSKKGKLPIVNE---ND---ELVAIIARTDLKKN  118 (120)
T ss_dssp             -----------CCSBTTTSCCEETTCCHHHHHHHTCSCC---CEEEET---TT---EEEEEECHHHHHHH
T ss_pred             E----------EEeeccCceEECCCCCHHHHHHHHHHcCccEEEEEcC---CC---EEEEEEEHHHhhhc
Confidence            0          0136678999999999999999999999999999985   35   89999999999975

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

Probab=99.72  E-value=4.1e-18  Score=136.14  Aligned_cols=114  Identities=16%  Similarity=0.228  Sum_probs=97.7

Q ss_pred             ccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhcCCCCCCChhhhhhhhHH
Q 020637          156 TVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTIS  235 (323)
Q Consensus       156 ~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~~~~~~l~~~~l~~~~i~  235 (323)
                      ++.++|  ++++.++++++|+.+|+++|.+++.+++||+|+ +++++|+||..|+++.    ..  .             
T Consensus         2 ~v~~~m--~~~~~~v~~~~tv~ea~~~m~~~~~~~v~Vvd~-~~~~~Gii~~~dl~~~----~~--~-------------   59 (121)
T d1vr9a3           2 KVKKWV--TQDFPMVEESATVRECLHRMRQYQTNECIVKDR-EGHFRGVVNKEDLLDL----DL--D-------------   59 (121)
T ss_dssp             BGGGGC--BSCSCEEETTCBHHHHHHHHHHTTSSEEEEECT-TSBEEEEEEGGGGTTS----CT--T-------------
T ss_pred             Cchhhh--cCCCeEECCCCCHHHHHHhhhhcCcEEEEEEeC-CceeEEEeehhhhhhh----hc--c-------------
Confidence            567788  578999999999999999999999999999985 7899999999998521    00  0             


Q ss_pred             HHHHHHHHhhcccccCCCCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637          236 AWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (323)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~  312 (323)
                                     ..+.++|..+++++++++++.+|+.+|.+++++++||+|+   +|   +++|+||..||+++
T Consensus        60 ---------------~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvde---~g---~~~Gvit~~dil~~  115 (121)
T d1vr9a3          60 ---------------SSVFNKVSLPDFFVHEEDNITHALLLFLEHQEPYLPVVDE---EM---RLKGAVSLHDFLEA  115 (121)
T ss_dssp             ---------------SBSGGGCBCTTCCEETTSBHHHHHHHHHHCCCSEEEEECT---TC---BEEEEEEHHHHHHH
T ss_pred             ---------------ccccccccCccEEECCCCCHHHHHHHHHhcCceeeeeECC---CC---eEEEEEEHHHHHHH
Confidence                           0122368889999999999999999999999999999985   35   89999999999987

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.90  E-value=8.5e-10  Score=87.75  Aligned_cols=60  Identities=15%  Similarity=0.307  Sum_probs=54.8

Q ss_pred             cccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHH
Q 020637          153 STHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR  215 (323)
Q Consensus       153 ~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~  215 (323)
                      ...++.++|  +++++++.+++++.+|+++|.+++++++||+|+ +|+++|+||..|+++++.
T Consensus        63 ~~~~v~~im--~~~~~~v~~~~~l~~a~~~m~~~~~~~lPVVD~-~g~lvGiIt~~Dil~~i~  122 (127)
T d2ouxa2          63 DDTLIADIL--NERVISVHVGDDQEDVAQTIRDYDFLAVPVTDY-DDHLLGIVTVDDIIDVID  122 (127)
T ss_dssp             TTSBHHHHS--BSCCCCEETTSBHHHHHHHHHHHTCSEEEEECT-TCBEEEEEEHHHHHHHHH
T ss_pred             ccEEhhhhc--cCCCccCCCCCCHHHHHHHHHHhCCEEEEEEeC-CCEEEEEEEHHHHHHHHH
Confidence            356789999  578999999999999999999999999999995 799999999999998765

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

Probab=98.75  E-value=7.6e-09  Score=83.85  Aligned_cols=62  Identities=19%  Similarity=0.381  Sum_probs=55.7

Q ss_pred             hccccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHH
Q 020637          151 FLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR  215 (323)
Q Consensus       151 ~l~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~  215 (323)
                      ......+.++|  +..++++.+++++.+|+++|.+++++.+||+|+ +|+++|+||..|+++++.
T Consensus        61 ~~~~~~v~~im--~~~~~~v~~~~~~~~a~~~m~~~~~~~lPVVd~-~g~lvGiIt~~Dil~~l~  122 (144)
T d2yvxa2          61 ADPRTRVAEIM--NPKVVYVRTDTDQEEVARLMADYDFTVLPVVDE-EGRLVGIVTVDDVLDVLE  122 (144)
T ss_dssp             SCTTCBSTTTS--BSSCCCEESSCCHHHHHHHHHHSCCSEEEEECS-SCBEEEEEEHHHHHHHHH
T ss_pred             cccccchHHhc--ccCCccCCCCChHHHHHHHHHHcCCCEEEEEeE-CCEEEEEEEHHHHHHHHH
Confidence            34567889999  578999999999999999999999999999995 799999999999988665

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.72  E-value=3.5e-09  Score=86.37  Aligned_cols=63  Identities=16%  Similarity=0.360  Sum_probs=54.3

Q ss_pred             hhhccccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHH
Q 020637          149 SSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILIL  214 (323)
Q Consensus       149 ~~~l~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l  214 (323)
                      ...+...++.++|  +++++++.+++++.+|+++|.+++++++||+|+ +|+++||||.+|++++|
T Consensus        93 ~~~~~~~~v~~~m--~~~~~tv~~~~~l~~~~~~m~~~~~~~lpVvd~-~g~lvGivt~~Dil~~l  155 (156)
T d2yzqa1          93 ELQLPNKPVAEIM--TRDVIVATPHMTVHEVALKMAKYSIEQLPVIRG-EGDLIGLIRDFDLLKVL  155 (156)
T ss_dssp             ----CCCBGGGTC--BSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEET-TTEEEEEEEHHHHGGGG
T ss_pred             hhcccCCEeehhc--ccCceEECcccccHHHHHHHHHcCeeEEEEEeC-CCEEEEEEEHHHHHHHh
Confidence            3345678999999  678999999999999999999999999999995 79999999999997643

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.68  E-value=7.4e-09  Score=83.59  Aligned_cols=59  Identities=22%  Similarity=0.325  Sum_probs=53.2

Q ss_pred             ccccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHH
Q 020637          152 LSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILI  213 (323)
Q Consensus       152 l~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~  213 (323)
                      ....+++++|  +.+++++++++++.+|+++|.+++++++||+|+ .|+++|+||..|+++.
T Consensus        66 ~~~~~v~~im--~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~-~g~l~Giit~~Dil~~  124 (142)
T d1pvma4          66 PDEVPIRLVM--RKPIPKVKSDYDVKDVAAYLSENGLERCAVVDD-PGRVVGIVTLTDLSRY  124 (142)
T ss_dssp             GGGSBGGGTS--BSSCCEEETTCBHHHHHHHHHHHTCSEEEEECT-TCCEEEEEEHHHHTTT
T ss_pred             cccccccccc--ccccccccchhhHHHHHHHHHHcCCcEEEEEec-CCEEEEEEEHHHHHHH
Confidence            4456789999  578999999999999999999999999999995 7899999999999653

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

Probab=98.66  E-value=1.6e-08  Score=79.90  Aligned_cols=74  Identities=20%  Similarity=0.338  Sum_probs=59.4

Q ss_pred             CHHHHHHHHHhhhhhccccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHH
Q 020637          137 SEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILIL  214 (323)
Q Consensus       137 s~~~l~~~~~~~~~~l~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l  214 (323)
                      ++.|+-.............++.++|  +.+++++++++++.+|+++|.+++++.+||+|  .|+++|+||.+|+++.+
T Consensus        52 t~~Di~~~~~~~~~~~~~~~v~~im--~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd--~~~~~GiIt~~Dil~~~  125 (127)
T d2rc3a1          52 TERDFSRKSYLLDKPVKDTQVKEIM--TRQVAYVDLNNTNEDCMALITEMRVRHLPVLD--DGKVIGLLSIGDLVKDA  125 (127)
T ss_dssp             EHHHHHHHGGGSSSCGGGSBGGGTS--BCSCCCBCTTCBHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHHH
T ss_pred             EccchhhhhhhhcccccceeEeeec--cceeEEeccCccHHHHHHHHHHCCCcEEEEEE--CCEEEEEEEHHHHHHHH
Confidence            3555543332333334567899999  68899999999999999999999999999998  37999999999998754

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=98.66  E-value=6.3e-09  Score=82.77  Aligned_cols=60  Identities=15%  Similarity=0.320  Sum_probs=53.9

Q ss_pred             cccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHH
Q 020637          153 STHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR  215 (323)
Q Consensus       153 ~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~  215 (323)
                      ...++.++|  +.+++++.+++++.+|+++|.+++++++||+|+ +|+++|+||.+|+++++.
T Consensus        72 ~~~~v~~im--~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~-~g~lvGiit~~Dil~~~~  131 (135)
T d3ddja2          72 STTPIIDYM--TPNPVTVYNTSDEFTAINIMVTRNFGSLPVVDI-NDKPVGIVTEREFLLLYK  131 (135)
T ss_dssp             HTSBGGGTS--EESCCCEETTSCHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHGGGGG
T ss_pred             ccCCHHHHh--CCccceEEeccccchhhhhhhhcceeEEEEEeC-CCEEEEEEEHHHHHHHHH
Confidence            457788999  688999999999999999999999999999995 799999999999976543

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=98.65  E-value=2e-08  Score=79.34  Aligned_cols=64  Identities=16%  Similarity=0.323  Sum_probs=56.4

Q ss_pred             hccccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhh
Q 020637          151 FLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILREL  217 (323)
Q Consensus       151 ~l~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~  217 (323)
                      .....++.++|  +.+++++.+++++.+|+++|.+++++.+||+|+ .|+++|+||..|+++++...
T Consensus        63 ~~~~~~v~~~~--~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~-~~~lvGiit~~Dll~~i~~~  126 (127)
T d2ef7a1          63 KSLETKAEEFM--TASLITIREDSPITGALALMRQFNIRHLPVVDD-KGNLKGIISIRDITRAIDDM  126 (127)
T ss_dssp             CCTTCBGGGTS--EECCCCEETTSBHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHHHHHHH
T ss_pred             ccccchhhhhh--hhhccccccccchhHHHHHHHHcCceEEEEEeC-CCeEEEEEEHHHHHHHHHhh
Confidence            34557889999  468899999999999999999999999999995 78999999999999887643

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

Probab=98.63  E-value=5.8e-09  Score=83.82  Aligned_cols=54  Identities=17%  Similarity=0.161  Sum_probs=49.8

Q ss_pred             CCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637          253 NGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (323)
Q Consensus       253 ~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~  312 (323)
                      +.++|+++++++.++++|.+|+.+|.+++++++||+|+   +|   +++|+||.+||+++
T Consensus         4 v~diM~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVvd~---~~---~~~Giit~~dl~~~   57 (139)
T d2o16a3           4 VEDMMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDA---NK---KLLGIVSQRDLLAA   57 (139)
T ss_dssp             GGGTSEESCCCBCTTSBHHHHHHHHHHHTCSEEEEECT---TC---BEEEEEEHHHHHHH
T ss_pred             HHHhCcCCCeEECCcCCHHHHHHHHHHcCCCeeeeecc---cc---cccccccHHHHHHH
Confidence            34689999999999999999999999999999999985   35   89999999999988

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.62  E-value=1.2e-08  Score=81.24  Aligned_cols=53  Identities=19%  Similarity=0.320  Sum_probs=49.0

Q ss_pred             CCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637          254 GRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (323)
Q Consensus       254 ~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~  312 (323)
                      .++|+++++++.+++++.+|+++|.+++++++||+|+   +|   +++|+||..||+++
T Consensus         8 ~~im~~~~~~v~~~~t~~~a~~~m~~~~~~~~~Vvd~---~~---~~~Giit~~di~~~   60 (132)
T d2yzia1           8 KVYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVIND---DG---NVVGFFTKSDIIRR   60 (132)
T ss_dssp             GGTCBCCCCEECTTSBHHHHHHHHHHHTCSEEEEECT---TS---CEEEEEEHHHHHHH
T ss_pred             HHHcCCCCeEECCcCcHHHHHHHHHHcCCcEEEEecc---cc---eeeeeeeHHHHHHH
Confidence            4589999999999999999999999999999999985   35   79999999999976

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.62  E-value=1.4e-08  Score=80.15  Aligned_cols=52  Identities=12%  Similarity=0.134  Sum_probs=45.6

Q ss_pred             CCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637          257 CPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (323)
Q Consensus       257 m~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~  312 (323)
                      |.+.+++++|+++|.+|+++|.+++++++||+|+. .+|   +++||||.+||+++
T Consensus         3 mi~dpvtv~~~~tv~~a~~~m~~~~~~~~pVvD~~-~~~---~lvGivt~~Di~~~   54 (126)
T d1zfja4           3 VIIDPFFLTPEHKVSEAEELMQRYRISGVPIVETL-ANR---KLVGIITNRDMRFI   54 (126)
T ss_dssp             TSSSCCCBCSSSBHHHHHHHHHHTTCSEEEEESCT-TTC---BEEEEEEHHHHHHC
T ss_pred             CEeCceEECCCCCHHHHHHHHHHhCCCcEEEEeec-cCC---eEEEEeEHHHHHHh
Confidence            45567899999999999999999999999999852 234   79999999999887

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.60  E-value=1.4e-08  Score=79.78  Aligned_cols=57  Identities=25%  Similarity=0.395  Sum_probs=50.4

Q ss_pred             cccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHH
Q 020637          153 STHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILI  213 (323)
Q Consensus       153 ~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~  213 (323)
                      ....+.++|  +.+++++.+++++.+|+++|.+++++.+||+|+  ++++||||.+|+++.
T Consensus        65 ~~~~v~~im--~~~~~~v~~~~~~~~~~~~m~~~~~~~lpVvd~--~~lvGiit~~Dil~~  121 (123)
T d1y5ha3          65 NTATAGELA--RDSIYYVDANASIQEMLNVMEEHQVRRVPVISE--HRLVGIVTEADIARH  121 (123)
T ss_dssp             TTSBHHHHH--TTCCCCEETTCCHHHHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHT
T ss_pred             ccceEEEEe--eccceeeeecchHHHHHHHHHHcCceEEEEEEC--CEEEEEEEHHHHHhh
Confidence            345678888  578899999999999999999999999999983  699999999999753

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

Probab=98.56  E-value=3.1e-08  Score=79.55  Aligned_cols=52  Identities=12%  Similarity=0.184  Sum_probs=48.5

Q ss_pred             CCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637          255 RPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (323)
Q Consensus       255 ~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~  312 (323)
                      ++|+++++++.+++++.+|+.+|.+++++++||+|+  + |   +++|+||..||+++
T Consensus         8 ~~m~~~p~~v~~~~~v~~a~~~m~~~~~~~ipVvd~--~-~---~~vGiis~~Dl~~~   59 (145)
T d1o50a3           8 KLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVAR--D-N---KLVGMIPVMHLLKV   59 (145)
T ss_dssp             TSSCCCCEEECTTCBHHHHHHHHHHSTTCCEEEEEE--T-T---EEEEEEEHHHHHHH
T ss_pred             HhCCCCCEEECCcCcHHHHHHHHHHcCCceEEEecc--C-c---ceeeeeccchhhhh
Confidence            379999999999999999999999999999999985  3 5   89999999999987

>d1m7xa1 b.1.18.2 (A:117-226) 1,4-alpha-glucan branching enzyme, N-terminal domain N {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: E-set domains of sugar-utilizing enzymes
domain: 1,4-alpha-glucan branching enzyme, N-terminal domain N
species: Escherichia coli [TaxId: 562]

Probab=98.56  E-value=1.1e-07  Score=73.72  Aligned_cols=67  Identities=25%  Similarity=0.511  Sum_probs=51.5

Q ss_pred             EEEEE-eeCCCceEEEEeccCCCCCC-CCCCCCCCCCCeEEEEEEeCCceEEEEEEE---cCeee--cCCCCCee
Q 020637           22 PVRFI-WPNGGRRVSLSGSFTRWSEP-MPMSPSEGCPAVFQIICRLPPGHHQYKFYV---DGEWR--HDENQPHV   89 (323)
Q Consensus        22 ~v~F~-w~~~~~~V~l~Gsf~~W~~~-~~m~~~~~~~g~~~~~~~LppG~y~YkFiV---DG~w~--~d~~~p~~   89 (323)
                      -++|+ |.+.|++|+|+|+||+|... .+|.+.. ..|.|++.++....-..|||.|   ||.|.  .||..-..
T Consensus        21 Gv~FrvwAP~A~~V~l~gdfn~~~~~~~~m~~~~-~~G~W~~~i~~~~~G~~Y~y~v~~~~G~~~~~~DPYA~~~   94 (110)
T d1m7xa1          21 GTRFSVWAPNARRVSVVGQFNYWDGRRHPMRLRK-ESGIWELFIPGAHNGQLYKYEMIDANGNLRLKSDPYAFEA   94 (110)
T ss_dssp             EEEEEEECSSCSCEEEEEGGGTSCTTTCBCCCCT-TTTEEEEEEETCCTTCEEEEEEECTTSCEEEECCTTCSSE
T ss_pred             eEEEEEECCCCCEEEEEEECCCCCCceEEeEEec-CCCcEEEEecCCCCCCEEEEEEEcCCCcEeEEcChhhccc
Confidence            38886 78899999999999999865 5887543 3689999998666666788877   77765  57776543

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.56  E-value=4.4e-08  Score=76.55  Aligned_cols=73  Identities=15%  Similarity=0.201  Sum_probs=58.5

Q ss_pred             CHHHHHHHHHhhhhhccccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHH
Q 020637          137 SEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILIL  214 (323)
Q Consensus       137 s~~~l~~~~~~~~~~l~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l  214 (323)
                      ++.++-..+.. ...+....+.|+|  +.+++++++++++.+|++.|.++++..+||.|  .++++|+||.+|++++.
T Consensus        47 t~~Di~~~l~~-~~~~~~~~v~~~m--~~~~~~v~~~~~l~~a~~~m~~~~~~~l~V~~--~~~l~Givt~~Dil~A~  119 (120)
T d1pbja3          47 TTWDVLEAIAE-GDDLAEVKVWEVM--ERDLVTISPRATIKEAAEKMVKNVVWRLLVEE--DDEIIGVISATDILRAK  119 (120)
T ss_dssp             EHHHHHHHHHH-TCCTTTSBHHHHC--BCGGGEECTTSCHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHHH
T ss_pred             Eeeeccccccc-cccccceeEeeec--ccccccccchhHHHHHHHHHHHcCCeEEEEEE--CCEEEEEEEHHHHHhcC
Confidence            34555442221 2345667899999  57899999999999999999999999999987  47999999999998653

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=98.54  E-value=8.2e-08  Score=78.01  Aligned_cols=62  Identities=16%  Similarity=0.148  Sum_probs=51.9

Q ss_pred             cccccccccC----CCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHH
Q 020637          153 STHTVYELLP----DSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR  215 (323)
Q Consensus       153 ~~~~~~dvmp----~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~  215 (323)
                      ...++.++|.    ....++++.+++++.+|+++|.+++++.+||+|+ .|+++|+||.+|+++++.
T Consensus        68 ~~~~v~~~~~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~-~~~lvGivT~~Dil~~~~  133 (153)
T d2ooxe2          68 LDLSVGEALLKRPANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDE-NLKLEGILSLADILNYII  133 (153)
T ss_dssp             GGSBHHHHHHTSCCCSSCCCEECTTCBHHHHHHHHHHSCCSEEEEECT-TCBEEEEEEHHHHHHHHH
T ss_pred             cccchhhheeeeecccCCCeEECCCCcHHHHHHhhhhceeeEEEEEcC-CCEEEEEEEHHHHHHHHH
Confidence            3445555552    2467789999999999999999999999999995 789999999999988765

>d2bhua1 b.1.18.2 (A:14-110) Glycosyltrehalose trehalohydrolase, N-terminal domain N {Deinococcus radiodurans [TaxId: 1299]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: E-set domains of sugar-utilizing enzymes
domain: Glycosyltrehalose trehalohydrolase, N-terminal domain N
species: Deinococcus radiodurans [TaxId: 1299]

Probab=98.53  E-value=4.1e-08  Score=74.43  Aligned_cols=63  Identities=21%  Similarity=0.290  Sum_probs=52.7

Q ss_pred             EEEEEe-eCCCceEEEEeccCCCCCCCCCCCCCCCCCeEEEEEEeCCceEEEEEEEcCeeecCCCCCeeeC
Q 020637           22 PVRFIW-PNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWRHDENQPHVSG   91 (323)
Q Consensus        22 ~v~F~w-~~~~~~V~l~Gsf~~W~~~~~m~~~~~~~g~~~~~~~LppG~y~YkFiVDG~w~~d~~~p~~~d   91 (323)
                      -++|+. .+.|++|.|+++++.    .+|++.+  +|.|++++.+.+|.+ |+|+|||.|+.||......+
T Consensus        22 g~~FrvwAP~A~~V~l~~~~~~----~~m~~~~--~G~w~~~~~~~~G~~-Y~y~vdg~~~~DPyar~~~~   85 (97)
T d2bhua1          22 GTRFRLWTSTARTVAVRVNGTE----HVMTSLG--GGIYELELPVGPGAR-YLFVLDGVPTPDPYARFLPD   85 (97)
T ss_dssp             CEEEEEECSSCSSEEEEETTEE----EECEEEE--TTEEEEEESCCTTCE-EEEEETTEEECCTTCSCCTT
T ss_pred             eEEEEEECCCCCEeEEEeeCCc----cCCEEcc--CEEEEEEcCCCCCCE-EEEEECCeEccCCchhcCCC
Confidence            478875 568999999997654    4798876  799999999999976 99999999999998765543

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=98.53  E-value=4.8e-08  Score=79.18  Aligned_cols=59  Identities=12%  Similarity=0.122  Sum_probs=51.7

Q ss_pred             ccccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHH
Q 020637          152 LSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILIL  214 (323)
Q Consensus       152 l~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l  214 (323)
                      .......++|  +..++++++++++.+|+++|.+++++++||+|  +|+++||||.+|+++++
T Consensus       100 ~~~~~~~~~~--~~~~~tv~~~~~l~~~~~~m~~~~v~~l~V~d--~g~lvGiIt~~Di~k~I  158 (160)
T d2d4za3         100 VVVNFETCRI--DQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTS--MGKLVGVVALAEIQAAI  158 (160)
T ss_dssp             CBCCTTSSCE--ECCSCCBCTTCBHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHHH
T ss_pred             cccceeeecc--cCCCEEEcCCCCHHHHHHHHHHcCCeEEEEEE--CCEEEEEEEHHHHHHHh
Confidence            3445566777  67889999999999999999999999999997  48999999999998866

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein YkuL
species: Bacillus subtilis [TaxId: 1423]

Probab=98.51  E-value=1.5e-08  Score=80.59  Aligned_cols=49  Identities=10%  Similarity=0.192  Sum_probs=46.0

Q ss_pred             CCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637          258 PRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (323)
Q Consensus       258 ~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~  312 (323)
                      .+.++++.++++|.+|+.+|.+++++++||+|+   +|   +++|+||.+||+++
T Consensus        11 ~~~v~~v~~~~tl~~a~~~m~~~~~s~~pVvd~---~~---~~vGiit~~di~~~   59 (132)
T d1yava3          11 ADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDP---SY---RLHGLIGTNMIMNS   59 (132)
T ss_dssp             GGGSCCEETTCBHHHHHHHHHHHCCSEEEEECT---TC---BEEEEEEHHHHHHH
T ss_pred             ccceEEEcCCCCHHHHHHHHHhhCCCceEEeec---cc---ccccEEEcchhHHH
Confidence            788999999999999999999999999999985   35   89999999999988

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=98.50  E-value=3.3e-08  Score=77.46  Aligned_cols=57  Identities=12%  Similarity=0.272  Sum_probs=44.2

Q ss_pred             cccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHH
Q 020637          155 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL  212 (323)
Q Consensus       155 ~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~  212 (323)
                      ..+..+|-...+++++.+++++.+|+++|.+++++.+||+|+ .|+++||||.+|+++
T Consensus        61 ~~~~~~~~~~~~~~~v~~~~~~~~a~~~m~~~~i~~lpVVd~-~~~lvGiiT~~Di~k  117 (120)
T d1jr1a4          61 RFLEEIMTKREDLVVAPAGITLKEANEILQRSKKGKLPIVNE-NDELVAIIARTDLKK  117 (120)
T ss_dssp             -----CCSBTTTSCCEETTCCHHHHHHHTCSCC---CEEEET-TTEEEEEECHHHHHH
T ss_pred             ceeEEEEeeccCceEECCCCCHHHHHHHHHHcCccEEEEEcC-CCEEEEEEEHHHhhh
Confidence            445555554667999999999999999999999999999995 789999999999975

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

Probab=98.50  E-value=1.1e-07  Score=74.18  Aligned_cols=61  Identities=21%  Similarity=0.269  Sum_probs=54.3

Q ss_pred             ccccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHH
Q 020637          152 LSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR  215 (323)
Q Consensus       152 l~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~  215 (323)
                      ....++.++|  ..+++++.+++++.+|+++|.++++..+||+|+ .|+++|+||..|+++++.
T Consensus        57 ~~~~~v~~~~--~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvde-~g~~~Gvit~~dil~~l~  117 (121)
T d1vr9a3          57 DLDSSVFNKV--SLPDFFVHEEDNITHALLLFLEHQEPYLPVVDE-EMRLKGAVSLHDFLEALI  117 (121)
T ss_dssp             CTTSBSGGGC--BCTTCCEETTSBHHHHHHHHHHCCCSEEEEECT-TCBEEEEEEHHHHHHHHH
T ss_pred             hccccccccc--cCccEEECCCCCHHHHHHHHHhcCceeeeeECC-CCeEEEEEEHHHHHHHHH
Confidence            4456889998  467789999999999999999999999999995 799999999999988765

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.49  E-value=5.2e-08  Score=77.98  Aligned_cols=52  Identities=19%  Similarity=0.249  Sum_probs=48.4

Q ss_pred             CCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637          255 RPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (323)
Q Consensus       255 ~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~  312 (323)
                      .+|.+++++|.++++|.+|+.+|.+++++++||+|+   +|   +++|+||.+||+++
T Consensus        13 ~~~~~~v~tv~~~~~v~~a~~~m~~~~~~~ipVvd~---~~---~~vG~it~~Di~~~   64 (140)
T d2nyca1          13 IITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDE---NG---YLINVYEAYDVLGL   64 (140)
T ss_dssp             CCBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECT---TC---BEEEEEEHHHHHHH
T ss_pred             CccCCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEec---CC---eEcceehhhHHHHH
Confidence            368999999999999999999999999999999985   35   89999999999988

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.47  E-value=7.9e-08  Score=75.32  Aligned_cols=55  Identities=27%  Similarity=0.338  Sum_probs=47.2

Q ss_pred             cccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHH
Q 020637          155 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL  212 (323)
Q Consensus       155 ~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~  212 (323)
                      ..+.++|  ..+++++.+++++.+|+++|.++++.++||+|+ +|+++|+||.+|+++
T Consensus        60 ~~~~~~~--~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~-~~~liGiit~~dil~  114 (122)
T d2yzqa2          60 EQLAMLV--KRDVPVVKENDTLKKAAKLMLEYDYRRVVVVDS-KGKPVGILTVGDIIR  114 (122)
T ss_dssp             ----CCC--BSCCCEEETTSBHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHH
T ss_pred             cchhhcc--ccceeecchhhHHHHHHHHHHHcCcEEEEEEeC-CCEEEEEEEHHHHHH
Confidence            3466778  467889999999999999999999999999995 799999999999975

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=98.46  E-value=5.9e-08  Score=77.43  Aligned_cols=61  Identities=11%  Similarity=0.251  Sum_probs=55.0

Q ss_pred             cccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHh
Q 020637          153 STHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRE  216 (323)
Q Consensus       153 ~~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~  216 (323)
                      ....+.++|  +..++++++++++.+|+++|.++++..+||+|+ .|+++|+||.+|+++.+..
T Consensus        71 ~~~~v~~im--~~~~~~v~~~~~~~~~~~~m~~~~~~~l~Vvd~-~~~~iGiIt~~Dil~~l~~  131 (141)
T d3ddja1          71 YGKVVKDVM--VTNLVTIDELASVNRAAAEMIVKRIGSLLILNK-DNTIRGIITERDLLIALHH  131 (141)
T ss_dssp             HTCBHHHHS--BCCCCBCCTTSBHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHHHHHH
T ss_pred             cCCCHHHHh--CcccccccccchhhHHHHHHHHcCCCEEEEEcc-CCEEEEEEEHHHHHHHHHH
Confidence            456788999  578999999999999999999999999999995 7899999999999887653

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.46  E-value=6.3e-08  Score=78.87  Aligned_cols=57  Identities=14%  Similarity=0.168  Sum_probs=51.1

Q ss_pred             cccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHH
Q 020637          157 VYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR  215 (323)
Q Consensus       157 ~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~  215 (323)
                      +.++|  ..+++++++++++.+|+++|.+++++.+||+|++.|+++||||.+|++++|.
T Consensus        98 ~~~~~--~~~~~~v~~~~~l~~v~~~m~~~~~~~v~Vvd~~~g~~~GivT~~dilk~l~  154 (159)
T d2v8qe2          98 YLQDS--FKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLK  154 (159)
T ss_dssp             HSSSS--CCCCCCBCTTSBHHHHHHHHHHHTCSCEEEECTTTCCEEEEECHHHHHHHHH
T ss_pred             eeeee--ccceEEECCCCcHHHHHHHHHHhCCeEEEEEECCCCeEEEEEeHHHHHHHHH
Confidence            34566  5788999999999999999999999999999976789999999999998775

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

Probab=98.42  E-value=5.8e-08  Score=76.64  Aligned_cols=56  Identities=21%  Similarity=0.274  Sum_probs=49.7

Q ss_pred             CCCCCCCCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637          253 NGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (323)
Q Consensus       253 ~~~im~~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~  312 (323)
                      ++++|+++++++.++++|.||+.+|.+++++++||++.+ +.+   +++|++|..|++++
T Consensus         3 V~dim~~~~v~v~~~~tl~ea~~~m~~~~~~~~~Vv~~d-~~~---~~iGi~~~~dl~~~   58 (131)
T d2riha1           3 TSELLKRPPVSLPETATIREVATELAKNRVGLAVLTARD-NPK---RPVAVVSERDILRA   58 (131)
T ss_dssp             GGGGCCSCCEEEETTCBHHHHHHHHHHHTCSEEEEEETT-EEE---EEEEEEEHHHHHHH
T ss_pred             HHHhccCCCEEECCCCcHHHHHHHHHHhCCCcEEEEEEc-CCC---EEEEEEeeeccccc
Confidence            356899999999999999999999999999999999642 224   79999999999987

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=98.37  E-value=1e-07  Score=79.12  Aligned_cols=53  Identities=17%  Similarity=0.176  Sum_probs=47.3

Q ss_pred             CCCC--CCcEEeCCCCCHHHHHHHHHHcCCCEEeEEecCCCCCCcccEEEEeeccccccc
Q 020637          255 RPCP--RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (323)
Q Consensus       255 ~im~--~~~vtv~pd~~L~eaa~~m~~~~i~rlPVvD~~~~~g~~~~lvGIIT~~dIl~~  312 (323)
                      ++|+  ++++++.++++|.+|...|.+++++++||+|+  +.+   +++|+||..||+++
T Consensus        24 dvm~~s~~vv~i~~~~~v~~A~~~m~~~~i~~lpVvd~--~~~---~~vGiis~~Di~~~   78 (179)
T d2ooxe1          24 DVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDS--EAN---KFAGLLTMADFVNV   78 (179)
T ss_dssp             HHSCSEEEEEEEETTSBHHHHHHHHHHHTCSCEEEEET--TTT---EEEEEECHHHHHHH
T ss_pred             eeCCCCCcEEEEECcchHHHHHHHHHHcCCCeEEEEeC--CCC---eeEEEEeechHHHH
Confidence            3565  68999999999999999999999999999995  334   89999999999886

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.34  E-value=3.5e-07  Score=73.28  Aligned_cols=51  Identities=16%  Similarity=0.148  Sum_probs=46.9

Q ss_pred             CCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHH
Q 020637          164 SGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR  215 (323)
Q Consensus       164 s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~  215 (323)
                      ...++++.+++++.+|+++|.+++++.+||+|+ .|+++|+||.+|+++.+.
T Consensus        91 ~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~-~g~l~GiVt~~dii~~lv  141 (145)
T d2v8qe1          91 FEGVLKCYLHETLEAIINRLVEAEVHRLVVVDE-HDVVKGIVSLSDILQALV  141 (145)
T ss_dssp             CCSCCEECTTSBHHHHHHHHHHHTCSEEEEECT-TSBEEEEEEHHHHHHHHH
T ss_pred             cCCCeEECCCCcHHHHHHHHHHcCceEEEEEcc-CCEEEEEEEHHHHHHHHH
Confidence            467889999999999999999999999999995 789999999999998765

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=4.9e-07  Score=74.41  Aligned_cols=61  Identities=13%  Similarity=0.239  Sum_probs=54.1

Q ss_pred             ccccccccCCCCCeEEEecchhHHHHHHHHHHCCCCeeeeEeCCCCeEEEEEehHHHHHHHHhhc
Q 020637          154 THTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELG  218 (323)
Q Consensus       154 ~~~~~dvmp~s~~vv~vd~~~~v~~A~~~l~~~~i~~lPV~d~~~~~~vGilT~~D~i~~l~~~~  218 (323)
                      ...+.++|  .+.++++.+++++.+|+++|.+++++.+||.|  .|+++||||.+|+++.+....
T Consensus        99 ~~~v~~im--~~~~~tv~~~~~l~~v~~~~~~~~~~~l~V~d--~g~lvGiIt~~Dil~~l~~~~  159 (169)
T d2j9la1          99 TLKLRNIL--DLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTH--NGRLLGIITKKDVLKHIAQMA  159 (169)
T ss_dssp             CEECGGGE--ESSCCEEETTSBHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHHHHHHC
T ss_pred             ccchhhhc--cCCCEEECCCCcHHHHHHHHHhcCceEEEEEE--CCEEEEEEEHHHHHHHHHHHh
Confidence            45677888  57899999999999999999999999999987  479999999999998887654

>d3bmva2 b.3.1.1 (A:579-683) Cyclodextrin glycosyltransferase, C-terminal domain {Thermoanaerobacterium [TaxId: 28895]}

class: All beta proteins
fold: Prealbumin-like
superfamily: Starch-binding domain-like
family: Starch-binding domain
domain: Cyclodextrin glycosyltransferase, C-terminal domain
species: Thermoanaerobacterium [TaxId: 28895]

Probab=98.02  E-value=7.5e-06  Score=62.39  Aligned_cols=59  Identities=24%  Similarity=0.353  Sum_probs=46.9

Q ss_pred             CeeeEEEEEeeC----CCceEEEEeccC---CCCCC--CCCCCCCC--CCCeEEEEEEeCCce-EEEEEEE
Q 020637           18 SILVPVRFIWPN----GGRRVSLSGSFT---RWSEP--MPMSPSEG--CPAVFQIICRLPPGH-HQYKFYV   76 (323)
Q Consensus        18 ~~~~~v~F~w~~----~~~~V~l~Gsf~---~W~~~--~~m~~~~~--~~g~~~~~~~LppG~-y~YkFiV   76 (323)
                      ...++|+|....    .|+.|+|+||..   +|++.  ++|.....  ..+.|++++.||+|. ++|||++
T Consensus         3 ~~~v~V~F~v~~~~t~~Gq~v~vvGs~~~LG~W~~~~a~~l~~~~~~~~~~~W~~~v~lp~~~~~eYKyv~   73 (105)
T d3bmva2           3 GNQICVRFVVNNASTVYGENVYLTGNVAELGNWDTSKAIGPMFNQVVYQYPTWYYDVSVPAGTTIQFKFIK   73 (105)
T ss_dssp             SSEEEEEEEEESCCCCTTCEEEEEESSGGGTTTCGGGCBCSCBCSSSSCTTSEEEEEEEETTCEEEEEEEE
T ss_pred             CCEEEEEEEEcccccCCCCEEEEEeCcHHHCCCCHHHCcccccccccCCCCeEEEEEEECCCCeEEEEEEE
Confidence            457899999863    389999999965   89764  57876532  246899999999995 9999997

>d1qhoa2 b.3.1.1 (A:577-686) Cyclodextrin glycosyltransferase, C-terminal domain {Bacillus stearothermophilus, maltogenic alpha-amylase [TaxId: 1422]}

class: All beta proteins
fold: Prealbumin-like
superfamily: Starch-binding domain-like
family: Starch-binding domain
domain: Cyclodextrin glycosyltransferase, C-terminal domain
species: Bacillus stearothermophilus, maltogenic alpha-amylase [TaxId: 1422]

Probab=97.99  E-value=2e-05  Score=60.42  Aligned_cols=57  Identities=23%  Similarity=0.485  Sum_probs=43.5

Q ss_pred             eeEEEEEeeC-----CCceEEEEeccC---CCCCC--CCCCCCCC-----CCCeEEEEEEeCCc-eEEEEEEE
Q 020637           20 LVPVRFIWPN-----GGRRVSLSGSFT---RWSEP--MPMSPSEG-----CPAVFQIICRLPPG-HHQYKFYV   76 (323)
Q Consensus        20 ~~~v~F~w~~-----~~~~V~l~Gsf~---~W~~~--~~m~~~~~-----~~g~~~~~~~LppG-~y~YkFiV   76 (323)
                      .+.|+|++..     -|+.|+|+||..   +|++.  .+|+..++     ..+.|++++.||+| .++|||++
T Consensus         5 ~~~V~f~v~~~~~T~~Gq~v~ivG~~~~LG~W~~~~a~~l~~~~~~~~~~~~~~W~~~v~lp~~~~~eYKyvi   77 (110)
T d1qhoa2           5 QTSVVFTVKSAPPTNLGDKIYLTGNIPELGNWSTDTSGAVNNAQGPLLAPNYPDWFYVFSVPAGKTIQFKFFI   77 (110)
T ss_dssp             EEEEEEEEESCCCCCTTCEEEEEESSGGGTTTCCCCSSCSSCCBCCCBCTTTTSEEEEEEEETTCEEEEEEEE
T ss_pred             ceEEEEEEeCcccCCCCCEEEEEeCcHHHCCCChhhccccccccCccccccCCeEEEEEEECCCCEEEEEEEE
Confidence            4577777752     379999999976   89875  47765431     24589999999998 49999987

>d1cyga2 b.3.1.1 (A:575-680) Cyclodextrin glycosyltransferase, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: Prealbumin-like
superfamily: Starch-binding domain-like
family: Starch-binding domain
domain: Cyclodextrin glycosyltransferase, C-terminal domain
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.98  E-value=1.7e-05  Score=60.42  Aligned_cols=59  Identities=22%  Similarity=0.374  Sum_probs=47.1

Q ss_pred             CeeeEEEEEeeC----CCceEEEEecc---CCCCCC--CCCCCCCC--CCCeEEEEEEeCCc-eEEEEEEE
Q 020637           18 SILVPVRFIWPN----GGRRVSLSGSF---TRWSEP--MPMSPSEG--CPAVFQIICRLPPG-HHQYKFYV   76 (323)
Q Consensus        18 ~~~~~v~F~w~~----~~~~V~l~Gsf---~~W~~~--~~m~~~~~--~~g~~~~~~~LppG-~y~YkFiV   76 (323)
                      ...++|+|....    .|+.|+|+||.   -+|++.  ++|.....  ....|.+++.+|.| .++|||++
T Consensus         3 ~~~v~V~F~v~~~~t~~Gq~v~vvGs~~~LG~W~~~~a~~l~~~~~~~~~~~w~~~v~~~~~~~~eYKyvi   73 (106)
T d1cyga2           3 NDQVSVRFVVNNATTNLGQNIYIVGNVYELGNWDTSKAIGPMFNQVVYSYPTWYIDVSVPEGKTIEFKFIK   73 (106)
T ss_dssp             SCEEEEEEEEESCCCCSSCEEEEEESSGGGBTTCGGGCBCCCBCSSSSCTTCEEEEEEEESSCEEEEEEEE
T ss_pred             CCEEEEEEEEcceEcCCCCEEEEEcCHHHHCCCCHHHCccceeccCcCCCCeEEEEEEeCCCCeEEEEEEE
Confidence            467999999953    48999999995   589864  68876532  24689999999998 59999998

>d1kula_ b.3.1.1 (A:) Glucoamylase, granular starch-binding domain {Aspergillus niger [TaxId: 5061]}

class: All beta proteins
fold: Prealbumin-like
superfamily: Starch-binding domain-like
family: Starch-binding domain
domain: Glucoamylase, granular starch-binding domain
species: Aspergillus niger [TaxId: 5061]

Probab=97.95  E-value=7.5e-06  Score=62.66  Aligned_cols=59  Identities=25%  Similarity=0.521  Sum_probs=47.2

Q ss_pred             CeeeEEEEEeeC---CCceEEEEeccC---CCCCC--CCCCCCC--CCCCeEEEEEEeCCc-eEEEEEEE
Q 020637           18 SILVPVRFIWPN---GGRRVSLSGSFT---RWSEP--MPMSPSE--GCPAVFQIICRLPPG-HHQYKFYV   76 (323)
Q Consensus        18 ~~~~~v~F~w~~---~~~~V~l~Gsf~---~W~~~--~~m~~~~--~~~g~~~~~~~LppG-~y~YkFiV   76 (323)
                      +..++|+|+.+.   -|++|+|+||..   +|++.  ++|....  ...+.|+.++.||+| .++|||++
T Consensus         4 ~~~v~V~F~v~~~t~~Gq~v~vvGs~~~LG~W~~~~a~~l~~~~~~~~~~~w~~~v~~~~~~~~eYKyvi   73 (108)
T d1kula_           4 PTAVAVTFDLTATTTYGENIYLVGSISQLGDWETSDGIALSADKYTSSDPLWYVTVTLPAGESFEYKFIR   73 (108)
T ss_dssp             TTCCCEEEECCCCCCSSCEEEEECSSGGGTTTCTTTSEECBCTTCSSSSCCCBCEECCCSCCEECCEEEE
T ss_pred             CCEEEEEEEEEeEcCCCCEEEEEeChHHhCCCCHHHCccceEccccCCCCCEEEEEEeCCCCeEEEEEEE
Confidence            457889999975   379999999965   89875  5787542  125689999999998 59999998

>d1eh9a1 b.1.18.2 (A:1-90) Glycosyltrehalose trehalohydrolase, N-terminal domain N {Archaeon Sulfolobus solfataricus, km1 [TaxId: 2287]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: E-set domains of sugar-utilizing enzymes
domain: Glycosyltrehalose trehalohydrolase, N-terminal domain N
species: Archaeon Sulfolobus solfataricus, km1 [TaxId: 2287]

Probab=97.76  E-value=5.9e-06  Score=61.27  Aligned_cols=62  Identities=19%  Similarity=0.161  Sum_probs=48.1

Q ss_pred             EEEEe-eCCCceEEEEeccCCCCCCCCCCCCCCCCCeEEEEEE-eCCceEEEEEEEcC-eeecCCCCCeee
Q 020637           23 VRFIW-PNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICR-LPPGHHQYKFYVDG-EWRHDENQPHVS   90 (323)
Q Consensus        23 v~F~w-~~~~~~V~l~Gsf~~W~~~~~m~~~~~~~g~~~~~~~-LppG~y~YkFiVDG-~w~~d~~~p~~~   90 (323)
                      ++|+. .+.|++|.|++...+|   .+|++.+  +|.|+++++ +.+| +.|+|.||| .++.||......
T Consensus        11 v~FrvwAP~A~~V~l~~~~~~~---~~m~~~~--~G~W~~~v~~~~~G-~~Y~y~v~~~~~~~DP~s~~~~   75 (90)
T d1eh9a1          11 VIFTLWAPYQKSVKLKVLEKGL---YEMERDE--KGYFTITLNNVKVR-DRYKYVLDDASEIPDPASRYQP   75 (90)
T ss_dssp             EECCEECTTCSCCBCCCSSSCC---CCCCCCT--TSEECCEESSCCSC-CEECEECTTSCEECCTTCSCCT
T ss_pred             EEEEEECCCCCEEEEEeecCCc---ccceeCC--CCEEEEEeCCCCCC-ceeEEEEeCCcCcCCccHhcCC
Confidence            57765 5689999999875444   6898876  799999985 7888 669999987 567888765543

>d1vema1 b.3.1.1 (A:418-516) beta-amylase {Bacillus cereus [TaxId: 1396]}

class: All beta proteins
fold: Prealbumin-like
superfamily: Starch-binding domain-like
family: Starch-binding domain
domain: beta-amylase
species: Bacillus cereus [TaxId: 1396]

Probab=97.67  E-value=4.1e-05  Score=57.52  Aligned_cols=57  Identities=16%  Similarity=0.214  Sum_probs=42.5

Q ss_pred             eeEEEEEeeC----CCceEEEEeccC---CCCCCC--CCCCCCCCCCeEEEEEEeCCce-EEEEEEE
Q 020637           20 LVPVRFIWPN----GGRRVSLSGSFT---RWSEPM--PMSPSEGCPAVFQIICRLPPGH-HQYKFYV   76 (323)
Q Consensus        20 ~~~v~F~w~~----~~~~V~l~Gsf~---~W~~~~--~m~~~~~~~g~~~~~~~LppG~-y~YkFiV   76 (323)
                      .++++|....    -|+.|+|+||..   +|++..  .|.......+.|++.+.||+|. ++|||++
T Consensus         2 pv~~~~~v~~~~T~~Gq~v~vvGs~~eLG~W~~~ka~~l~~~~~~~~~W~~~v~lp~~~~~eYKyvi   68 (99)
T d1vema1           2 PVMQTIVVKNVPTTIGDTVYITGNRAELGSWDTKQYPIQLYYDSHSNDWRGNVVLPAERNIEFKAFI   68 (99)
T ss_dssp             EEEEEEEEESCCCCTTCEEEEEESSGGGTTTCSSSSCEECEEETTTTEEEEEEEEETTCCEEEEEEE
T ss_pred             ceeEEEEEeeeEcCCCCEEEEEeCcHHHCCCChhhheeeeeccCCCCCEEEEEEEcCCCcEEEEEEE
Confidence            4677887764    389999999987   998752  1221122356899999999995 9999997

>d1bf2a1 b.1.18.2 (A:1-162) Isoamylase, N-terminal domain N {Pseudomonas amyloderamosa [TaxId: 32043]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: E-set domains of sugar-utilizing enzymes
domain: Isoamylase, N-terminal domain N
species: Pseudomonas amyloderamosa [TaxId: 32043]

Probab=95.84  E-value=0.0054  Score=49.41  Aligned_cols=58  Identities=14%  Similarity=0.224  Sum_probs=43.2

Q ss_pred             eeEEEEE-eeCCCceEEEEeccCCCCCC----CCCCCCCCCCCeEEEEEE--------eCCceEEEEEEEcCee
Q 020637           20 LVPVRFI-WPNGGRRVSLSGSFTRWSEP----MPMSPSEGCPAVFQIICR--------LPPGHHQYKFYVDGEW   80 (323)
Q Consensus        20 ~~~v~F~-w~~~~~~V~l~Gsf~~W~~~----~~m~~~~~~~g~~~~~~~--------LppG~y~YkFiVDG~w   80 (323)
                      ...|+|+ |...|++|.|+--.+++...    ++|.+..  +|+|.+.++        +.+|.+ |.|.|||.|
T Consensus        15 g~~v~F~vwAp~A~~V~L~ly~~~~~~~~~~~~~l~~~~--~gvW~~~v~~~~~~~~g~~~G~~-Y~yrv~Gp~   85 (162)
T d1bf2a1          15 QANITFRVYSSQATRIVLYLYSAGYGVQESATYTLSPAG--SGVWAVTVPVSSIKAAGITGAVY-YGYRAWGPN   85 (162)
T ss_dssp             SSEEEEEEECSSCSEEEEEEESSSSSCCCSEEEECEECS--TTEEEEEEEHHHHHHTTCCSCCE-EEEEEEBTT
T ss_pred             CeeEEEEEECCCCCEEEEEEEcCCCCCcceeEEEccccc--ccEEEEEecccccccccCCCCcE-EEEEEcccc
Confidence            3457885 57789999999866666542    4677654  799999986        677755 888999965

>d2fhfa1 b.1.18.2 (A:288-402) Pullulanase PulA {Klebsiella pneumoniae [TaxId: 573]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: E-set domains of sugar-utilizing enzymes
domain: Pullulanase PulA
species: Klebsiella pneumoniae [TaxId: 573]

Probab=94.73  E-value=0.015  Score=43.92  Aligned_cols=55  Identities=15%  Similarity=0.106  Sum_probs=35.5

Q ss_pred             EEEEe-eCCCceEEEEeccCCCC-CC-CCCCCCCCCCCeEEEEEE-eCCceEEEEEEEcCe
Q 020637           23 VRFIW-PNGGRRVSLSGSFTRWS-EP-MPMSPSEGCPAVFQIICR-LPPGHHQYKFYVDGE   79 (323)
Q Consensus        23 v~F~w-~~~~~~V~l~Gsf~~W~-~~-~~m~~~~~~~g~~~~~~~-LppG~y~YkFiVDG~   79 (323)
                      +.|+. .+.|++|.|+-...++. .. .+|.... .+|+|++.++ +.+|.+ |+|.|+|.
T Consensus        19 ~~F~lwAP~A~~V~L~l~~~~~~~~~~~~~~~~~-~~GvW~~~i~~~~~G~~-Y~y~v~~~   77 (115)
T d2fhfa1          19 VTFRVWAPTAQQVELVIYSADKKVIASHPMTRDS-ASGAWSWQGGSDLKGAF-YRYAMTVY   77 (115)
T ss_dssp             EEEEEECTTCSEEEEEEECTTCCEEEEEECEECT-TTCEEEEEECGGGTTCE-EEEEEEEE
T ss_pred             EEEEEECCCCCEEEEEEECCCCCccceeeeeEcC-CCCEEEEEECCCCCCCE-EEEEEEcc
Confidence            56765 66899999974333332 22 2444332 3689999987 778875 77777653

>d3c8da1 b.1.18.20 (A:6-150) Enterochelin esterase {Shigella flexneri 2a str. 2457T [TaxId: 198215]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Enterochelin esterase N-terminal domain-like
domain: Enterochelin esterase
species: Shigella flexneri 2a str. 2457T [TaxId: 198215]

Probab=93.48  E-value=0.4  Score=37.33  Aligned_cols=85  Identities=22%  Similarity=0.309  Sum_probs=58.5

Q ss_pred             CCeeeEEEEEeeCC--------CceEEEEeccCCCC----CCCCCCCCCCCCCeEEEEEEeCCc-eEEEEEEE-c-----
Q 020637           17 GSILVPVRFIWPNG--------GRRVSLSGSFTRWS----EPMPMSPSEGCPAVFQIICRLPPG-HHQYKFYV-D-----   77 (323)
Q Consensus        17 ~~~~~~v~F~w~~~--------~~~V~l~Gsf~~W~----~~~~m~~~~~~~g~~~~~~~LppG-~y~YkFiV-D-----   77 (323)
                      +...+.|||-|++.        .+.|+|-++---..    ....|++-.+ ..+|..++.||.. +-.|+|+- .     
T Consensus        19 ~~~~~~VTFlWR~~~~~~~~sa~~~Vyl~~n~vtDh~~~~~~~~m~rl~g-TDVW~~s~~vpad~rgsY~fip~~~~~~~   97 (145)
T d3c8da1          19 NDEMFEVTFWWRDPQGSEEYSTIKRVWVYITGVTDHHQNSQPQSMQRIAG-TDVWQWTTQLNANWRGSYCFIPTERDDIF   97 (145)
T ss_dssp             CSSEEEEEEEEECTTCSTTTCCCCEEEEEETTTC-------CCBCEECTT-SSEEEEEEEEETTCEEEEEEEEESCCSTT
T ss_pred             CCCCEEEEEEEcCccccccccccceEEEecccccccccccChhhhhcCCC-CCeEEEEEEECcccEEEEEEEecCcccCC
Confidence            55688999999862        24699977655333    2245888764 7899999999997 68899984 1     


Q ss_pred             ----C------e-e-------ecCCCCCeee-CCCCccceEEEe
Q 020637           78 ----G------E-W-------RHDENQPHVS-GNYGVVNCVYIA  102 (323)
Q Consensus        78 ----G------~-w-------~~d~~~p~~~-d~~G~~nnvl~v  102 (323)
                          |      . |       +.||-||... +.-|+--++++.
T Consensus        98 ~~~~~~~~~~R~~wr~l~~~a~~DPlNp~~~~~~~g~~~S~l~l  141 (145)
T d3c8da1          98 SAPSPDRLELREGWRKLLPQAIADPLNPQSWKGGLGHAVSALEM  141 (145)
T ss_dssp             CCC--CHHHHHHHHHHHGGGCBCCTTCSSEECCSSSSCEEEEEC
T ss_pred             CcCCccHHHHHHHHHHhhhcccCCCCCCCCCcCCCCCccccccc
Confidence                1      1 1       4688888533 556666777777

>d1ji1a1 b.1.18.2 (A:1-122) Maltogenic amylase, N-terminal domain N {Thermoactinomyces vulgaris, TVAI [TaxId: 2026]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: E-set domains of sugar-utilizing enzymes
domain: Maltogenic amylase, N-terminal domain N
species: Thermoactinomyces vulgaris, TVAI [TaxId: 2026]

Probab=88.74  E-value=0.46  Score=35.62  Aligned_cols=59  Identities=10%  Similarity=0.060  Sum_probs=39.0

Q ss_pred             CeeeEEEEEeeC-CCceEEEE-eccCCCCCC-CCCCCCC-CCCC---eEEEEEEeCCceEEEEEEE
Q 020637           18 SILVPVRFIWPN-GGRRVSLS-GSFTRWSEP-MPMSPSE-GCPA---VFQIICRLPPGHHQYKFYV   76 (323)
Q Consensus        18 ~~~~~v~F~w~~-~~~~V~l~-Gsf~~W~~~-~~m~~~~-~~~g---~~~~~~~LppG~y~YkFiV   76 (323)
                      ...+.++++-+. ..++|.|. |+=-.|... .+|.+.. ...+   .|+++++++.++..|+|++
T Consensus        29 g~~v~IRLRt~~~dv~~V~l~~~d~~~~~~~~~~m~~~~~~~~~~fdywea~i~~~~~~~~Y~F~l   94 (122)
T d1ji1a1          29 TQSVTLKLRTFKGDITSANIKYWDTADNAFHWVPMVWDSNDPTGTFDYWKGTIPASPSIKYYRFQI   94 (122)
T ss_dssp             TCCEEEEEEEETTCCSEEEEEEEETTTTEEEEEECEEEEECTTSSEEEEEEEECCCSSCEEEEEEE
T ss_pred             CCEEEEEEEcccCCccEEEEEEecCCCCceeeEEEEEEeccCCCcEEEEEEEEEcCCCeEEEEEEE
Confidence            346666666553 57899886 444455332 3565432 1122   7899999999999999998

>d1wzla1 b.1.18.2 (A:1-120) Maltogenic amylase, N-terminal domain N {Thermoactinomyces vulgaris, TVAII [TaxId: 2026]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: E-set domains of sugar-utilizing enzymes
domain: Maltogenic amylase, N-terminal domain N
species: Thermoactinomyces vulgaris, TVAII [TaxId: 2026]

Probab=87.00  E-value=0.71  Score=34.55  Aligned_cols=60  Identities=10%  Similarity=0.034  Sum_probs=41.2

Q ss_pred             CCeeeEEEEEeeC-CCceEEEE-ec---cCCCCC-CCCCCCCCC--CCCeEEEEEEeCCceEEEEEEE
Q 020637           17 GSILVPVRFIWPN-GGRRVSLS-GS---FTRWSE-PMPMSPSEG--CPAVFQIICRLPPGHHQYKFYV   76 (323)
Q Consensus        17 ~~~~~~v~F~w~~-~~~~V~l~-Gs---f~~W~~-~~~m~~~~~--~~g~~~~~~~LppG~y~YkFiV   76 (323)
                      ....+.++|+=.. ..++|.|. |+   |+.+.. ..+|++...  .-..|+++++++..+.+|.|.+
T Consensus        19 ~~~~l~IRLRT~k~dv~~V~l~~gDpy~~~~~~~~~~~M~k~~s~~~fDywe~~i~~~~~r~~Y~F~l   86 (120)
T d1wzla1          19 SETQLRVRLRAKKGDVVRCEVLYADRYASPEEELAHALAGKAGSDERFDYFEALLECSTKRVKYVFLL   86 (120)
T ss_dssp             ETTEEEEEEEEETTTCSEEEEEEECTTCCTTSCCEEEECEEEEECSSEEEEEEEEECTTSCEEEEEEE
T ss_pred             CCCEEEEEEEeccCCccEEEEEEcCCccCCCCCEEEEEEEEeccCCCeeEEEEEEECCCCeEEEEEEE
Confidence            4556777777653 57888885 76   343322 258987531  1238999999999999999987