Citrus Sinensis ID: 020646

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320---
MSFARNYRQQGGTYHDRHWSSFNRDNCSSNSYNNYNYNRSWNDNHVRNYNNFHSYSGKFREHYQYDNPSYITASYVQPNNAPSFKRRKFSASAWGDSARNYLQVPNEYETAVSSSNKTLVPPVSISNIEVSTSMSCKRDRSKLEDDEPVFMSRDEIERFSPSRKDGIDALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRFIIATAALFLAAKSEETPRPLNDVLRASSELYHKQNITLLSYLLPIDWFEQYRERVIEAEQMILTTLNFELNVQHPYDPLTSILNKLGLSQTVLVNLALNLVSEG
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHcccEEEEEccHHHHHHHHHHHcccHHHHHHHHHHHHccc
cccHEEcccccccccccccccccccccccccccccccEEEcccccccccccccccccccHHccccccccccccccccccccccHHHcccccccccccccEEEEccccHHcccccccccccccccccccccccccccccccccccccccEEEcHHHHHcccccccccccHHHHHHHHHHHHHHHHHHccHccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccEEEEccccHHHHHHHHHHcccHHHHHHHHHHHHccc
msfarnyrqqggtyhdrhwssfnrdncssnsynnynynrswndnhvrnynnfhsysgkfrehyqydnpsyitasyvqpnnapsfkrrkfsasawgdsarnylqvpneyETAVsssnktlvppvsisnievstsmsckrdrskleddepvfmsrdeierfspsrkdGIDALRETHLRYSYCAFIQNLglrlelpqttiGTAMVLCHRFFVRRSHACHDRFIIATAALFLAAkseetprplnDVLRASSELYHKQNITLLSYLLPIDWFEQYRERVIEAEQMILTTLNFelnvqhpydpLTSILNKLGLSQTVLVNLALNLVSEG
msfarnyrqqggtyhdrhwssfnrDNCSSNSYNNYNYNRSWNDNHVRNYNNFHSYSGKFREHYQYDNPSYITASYVQPNNAPSFKRRKFSASAWGDSARNYLQVPNEYETAvsssnktlvppvsisnievstsmsckrdrskleddepvfmsrdeierfspsrkdGIDALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRFIIATAALFLAAKSEETPRPLNDVLRASSELYHKQNITLLSYLLPIDWFEQYRERVIEAEQMILTTLNFELNVQHPYDPLTSILNKLGLSQTVLVNLALNLVSEG
MSFARNYRQQGGTYHDRHWSSFnrdncssnsynnynynrswndnHVRNYNNFHSYSGKFREHYQYDNPSYITASYVQPNNAPSFKRRKFSASAWGDSARNYLQVPNEYETAVSSSNKTLVPPVSISNIEVSTSMSCKRDRSKLEDDEPVFMSRDEIERFSPSRKDGIDALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRfiiataalflaaKSEETPRPLNDVLRASSELYHKQNITLLSYLLPIDWFEQYRERVIEAEQMILTTLNFELNVQHPYDPLTSILNKLGLSQTVLVNLALNLVSEG
****************RHWSSFNRDNCSSNSYNNYNYNRSWNDNHVRNYNNFHSYSGKFREHYQYDNPSYITASYVQ****************W******YL****************************************************************IDALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRFIIATAALFLAAK********NDVLRASSELYHKQNITLLSYLLPIDWFEQYRERVIEAEQMILTTLNFELNVQHPYDPLTSILNKLGLSQTVLVNLALNLV***
********QQGGTYHDRHWSSFNRD***************************************************************************************************************************VFMSRDEI***********DALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRFIIATAALFLAAKSEETPRPLNDVLRASSELYHKQNITLLSYLLPIDWFEQYRERVIEAEQMILTTLNFELNVQHPYDPLTSILNKLGLSQTVLVNLALNLVSEG
*************YHDRHWSSFNRDNCSSNSYNNYNYNRSWNDNHVRNYNNFHSYSGKFREHYQYDNPSYITASYVQPNNAPSFKRRKFSASAWGDSARNYLQVPNEY********KTLVPPVSISNIEVS*************DDEPVFMSRDEIERFSPSRKDGIDALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRFIIATAALFLAAKSEETPRPLNDVLRASSELYHKQNITLLSYLLPIDWFEQYRERVIEAEQMILTTLNFELNVQHPYDPLTSILNKLGLSQTVLVNLALNLVSEG
*SFARNYRQQGGTYHDRHWSSFNRDNCSSNSYNNYNYNRSWNDNHVRNYNNFHSYSGKFREHYQYDNPSYITASYVQPNNAPSFKRRKFSASAWGDSARNYLQVPNEYETAVSSSNKTLV*P************************EPVFMSRDEIERFSPSRKDGIDALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRFIIATAALFLAAKSEETPRPLNDVLRASSELYHKQNITLLSYLLPIDWFEQYRERVIEAEQMILTTLNFELNVQHPYDPLTSILNKLGLSQTVLVNLALNLVSE*
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MSFARNYRQQGGTYHDRHWSSFNRDNCSSNSYNNYNYNRSWNDNHVRNYNNFHSYSGKFREHYQYDNPSYITASYVQPNNAPSFKRRKFSASAWGDSARNYLQVPNEYETAVSSSNKTLVPPVSISNIEVSTSMSCKRDRSKLEDDEPVFMSRDEIERFSPSRKDGIDALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRFIIATAALFLAAKSEETPRPLNDVLRASSELYHKQNITLLSYLLPIDWFEQYRERVIEAEQMILTTLNFELNVQHPYDPLTSILNKLGLSQTVLVNLALNLVSEG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query323 2.2.26 [Sep-21-2011]
Q2QQS5 543 Cyclin-T1-4 OS=Oryza sati yes no 0.538 0.320 0.488 2e-47
Q8GYM6 541 Cyclin-T1-4 OS=Arabidopsi yes no 0.538 0.321 0.482 3e-47
Q2RAC5 490 Cyclin-T1-3 OS=Oryza sati no no 0.538 0.355 0.488 4e-47
Q9FKE6 579 Cyclin-T1-5 OS=Arabidopsi no no 0.538 0.300 0.482 2e-46
Q56YF8 460 Cyclin-T1-2 OS=Arabidopsi no no 0.554 0.389 0.483 1e-40
Q0E474 446 Cyclin-T1-1 OS=Oryza sati no no 0.538 0.390 0.419 3e-40
Q6Z7H3 630 Cyclin-T1-2 OS=Oryza sati no no 0.535 0.274 0.410 9e-38
Q8LBC0 317 Cyclin-T1-3 OS=Arabidopsi no no 0.482 0.492 0.448 1e-35
Q9C8P7247 Putative cyclin-T1-1 OS=A no no 0.421 0.550 0.420 2e-25
Q9QWV9 724 Cyclin-T1 OS=Mus musculus yes no 0.430 0.191 0.375 5e-19
>sp|Q2QQS5|CCT14_ORYSJ Cyclin-T1-4 OS=Oryza sativa subsp. japonica GN=CYCT1-1 PE=2 SV=1 Back     alignment and function desciption
 Score =  189 bits (481), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 85/174 (48%), Positives = 122/174 (70%)

Query: 150 FMSRDEIERFSPSRKDGIDALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFV 209
           + SR EIE  SPSR+DGID  +E++LR SYC F+Q+LG+RL++PQ TI TA+V CHRF++
Sbjct: 37  YFSRKEIEENSPSRRDGIDLKKESYLRKSYCTFLQDLGMRLKVPQVTIATAIVFCHRFYL 96

Query: 210 RRSHACHDRFIIATAALFLAAKSEETPRPLNDVLRASSELYHKQNITLLSYLLPIDWFEQ 269
           R+SHA +DR  IAT  +FLA K EETPRPL DV+  S E+ HK++      +   + ++Q
Sbjct: 97  RQSHAKNDRRTIATVCMFLAGKVEETPRPLKDVILVSYEIIHKKDPAAGQRIKQKEVYDQ 156

Query: 270 YRERVIEAEQMILTTLNFELNVQHPYDPLTSILNKLGLSQTVLVNLALNLVSEG 323
            +E ++ AE+++L TL F+LNV HPY PL   + K  ++Q  L  +A N V++G
Sbjct: 157 QKELILLAERVVLATLGFDLNVHHPYKPLVEAIRKFKVAQNALAQVAWNFVNDG 210

Oryza sativa subsp. japonica (taxid: 39947)
>sp|Q8GYM6|CCT14_ARATH Cyclin-T1-4 OS=Arabidopsis thaliana GN=CYCT1-4 PE=1 SV=1 Back     alignment and function description
>sp|Q2RAC5|CCT13_ORYSJ Cyclin-T1-3 OS=Oryza sativa subsp. japonica GN=CYCT1-3 PE=3 SV=2 Back     alignment and function description
>sp|Q9FKE6|CCT15_ARATH Cyclin-T1-5 OS=Arabidopsis thaliana GN=CYCT1-5 PE=2 SV=2 Back     alignment and function description
>sp|Q56YF8|CCT12_ARATH Cyclin-T1-2 OS=Arabidopsis thaliana GN=CYCT1-2 PE=2 SV=2 Back     alignment and function description
>sp|Q0E474|CCT11_ORYSJ Cyclin-T1-1 OS=Oryza sativa subsp. japonica GN=CYCT1-1 PE=3 SV=2 Back     alignment and function description
>sp|Q6Z7H3|CCT12_ORYSJ Cyclin-T1-2 OS=Oryza sativa subsp. japonica GN=CYCT1_2 PE=2 SV=2 Back     alignment and function description
>sp|Q8LBC0|CCT13_ARATH Cyclin-T1-3 OS=Arabidopsis thaliana GN=CYCT1-3 PE=1 SV=2 Back     alignment and function description
>sp|Q9C8P7|CCT11_ARATH Putative cyclin-T1-1 OS=Arabidopsis thaliana GN=CYCT1-1 PE=3 SV=1 Back     alignment and function description
>sp|Q9QWV9|CCNT1_MOUSE Cyclin-T1 OS=Mus musculus GN=Ccnt1 PE=1 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query323
224099767323 predicted protein [Populus trichocarpa] 0.950 0.950 0.696 1e-123
255552333403 Cyclin-L1, putative [Ricinus communis] g 0.981 0.786 0.678 1e-118
297737019315 unnamed protein product [Vitis vinifera] 0.944 0.968 0.696 1e-117
225432602363 PREDICTED: cyclin-T1-4 [Vitis vinifera] 0.944 0.840 0.696 1e-117
147794477 443 hypothetical protein VITISV_012971 [Viti 0.944 0.688 0.693 1e-115
449444781378 PREDICTED: cyclin-T1-4-like [Cucumis sat 0.981 0.838 0.613 1e-107
449512870378 PREDICTED: LOW QUALITY PROTEIN: cyclin-T 0.981 0.838 0.610 1e-106
363807118327 uncharacterized protein LOC100797811 [Gl 0.959 0.948 0.615 1e-100
356536023372 PREDICTED: cyclin-T1-4-like [Glycine max 0.969 0.841 0.620 2e-98
357444297 433 Cyclin T1 [Medicago truncatula] gi|35548 0.965 0.720 0.587 4e-92
>gi|224099767|ref|XP_002311610.1| predicted protein [Populus trichocarpa] gi|222851430|gb|EEE88977.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  446 bits (1147), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 229/329 (69%), Positives = 263/329 (79%), Gaps = 22/329 (6%)

Query: 1   MSFARNYRQQGGTYHDRHWSS-----FNRDNCSSNSYNNYNYNRSWNDNHVRNYNNFHSY 55
           MSFARN+R  GGT HD  W+S     FN  N + ++  N NY+ +WN +++R+Y+     
Sbjct: 1   MSFARNHRSHGGTGHDDRWNSLNGYNFNHGNRNIDANRNTNYSYNWNHSNIRDYS----- 55

Query: 56  SGKFREHYQ-YDNPSYITASYVQPNNAPSFKRRKFSASAWGDSARNYLQVPNEYETAVSS 114
           SGKFR+H   Y NP         P+ AP+FKRRKFSA  WGD  R+Y Q  N YE A  S
Sbjct: 56  SGKFRDHVNGYANP---------PSGAPAFKRRKFSADTWGDGGRHYPQY-NAYEYADLS 105

Query: 115 SNKTLVPPVSISNIEVSTSMSCKRDRSKLEDDEPVFMSRDEIERFSPSRKDGIDALRETH 174
            N + VP  + SN EVSTS+SCKRD SKLE+DEPVF+S+DEIER SPSRKDGIDALRETH
Sbjct: 106 YNNS-VPLPTRSNDEVSTSISCKRDCSKLEEDEPVFLSKDEIERHSPSRKDGIDALRETH 164

Query: 175 LRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRFIIATAALFLAAKSEE 234
           LRYSYCAF+QNLGLRLELPQTTIGT MVLCHRFFVRRSHACHDR++IA AALFLAAKSEE
Sbjct: 165 LRYSYCAFLQNLGLRLELPQTTIGTGMVLCHRFFVRRSHACHDRYLIAVAALFLAAKSEE 224

Query: 235 TPRPLNDVLRASSELYHKQNITLLSYLLPIDWFEQYRERVIEAEQMILTTLNFELNVQHP 294
           TPRPLN+V+R S E++HKQ+IT LSYLLP+DWFEQYRERVIEAEQMILTTLNFE+NVQHP
Sbjct: 225 TPRPLNNVVRVSCEIFHKQDITFLSYLLPVDWFEQYRERVIEAEQMILTTLNFEINVQHP 284

Query: 295 YDPLTSILNKLGLSQTVLVNLALNLVSEG 323
           Y PLT+IL+KLGLSQTVLVNLA NLV EG
Sbjct: 285 YGPLTTILDKLGLSQTVLVNLAQNLVGEG 313

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255552333|ref|XP_002517211.1| Cyclin-L1, putative [Ricinus communis] gi|223543846|gb|EEF45374.1| Cyclin-L1, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|297737019|emb|CBI26220.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225432602|ref|XP_002277920.1| PREDICTED: cyclin-T1-4 [Vitis vinifera] Back     alignment and taxonomy information
>gi|147794477|emb|CAN71612.1| hypothetical protein VITISV_012971 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449444781|ref|XP_004140152.1| PREDICTED: cyclin-T1-4-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449512870|ref|XP_004164165.1| PREDICTED: LOW QUALITY PROTEIN: cyclin-T1-4-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|363807118|ref|NP_001242338.1| uncharacterized protein LOC100797811 [Glycine max] gi|255636314|gb|ACU18496.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|356536023|ref|XP_003536540.1| PREDICTED: cyclin-T1-4-like [Glycine max] Back     alignment and taxonomy information
>gi|357444297|ref|XP_003592426.1| Cyclin T1 [Medicago truncatula] gi|355481474|gb|AES62677.1| Cyclin T1 [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query323
TAIR|locus:2122975 541 CYCT1;4 [Arabidopsis thaliana 0.603 0.360 0.415 1.8e-39
TAIR|locus:2122940 460 CYCT1;2 [Arabidopsis thaliana 0.554 0.389 0.456 1.2e-35
TAIR|locus:2153358 590 AT5G45190 [Arabidopsis thalian 0.603 0.330 0.393 1.5e-34
TAIR|locus:2196919 317 CYCT1;3 "cyclin T 1;3" [Arabid 0.532 0.542 0.387 1.1e-30
TAIR|locus:2008698247 CYCT1;1 "cyclin T1;1" [Arabido 0.427 0.558 0.394 7e-22
UNIPROTKB|F1RJC3203 CCNL2 "Uncharacterized protein 0.436 0.694 0.335 6e-16
DICTYBASE|DDB_G0286617 405 cycK "putative K-type cyclin" 0.482 0.385 0.321 2.5e-15
UNIPROTKB|F2Z3J5236 CCNL2 "Cyclin-L2" [Homo sapien 0.467 0.639 0.320 4.2e-15
UNIPROTKB|F2Z2C9173 CCNT2 "Cyclin-T2" [Homo sapien 0.489 0.913 0.283 1.2e-14
POMBASE|SPBC32F12.06 342 pch1 "P-TEFB associated cyclin 0.523 0.494 0.284 1.2e-14
TAIR|locus:2122975 CYCT1;4 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 421 (153.3 bits), Expect = 1.8e-39, P = 1.8e-39
 Identities = 81/195 (41%), Positives = 118/195 (60%)

Query:   129 EVSTSMSCKRDRSKLEDDEPVFMSRDEIERFSPSRKDGIDALRETHLRYSYCAFIQNLGL 188
             E   S   +    K ++    +  R EIE  SPSR D ID  +ET+LR SYC F+Q+LG+
Sbjct:    13 ESGVSSYSRNSNEKQDEVARWYFGRKEIEENSPSRLDSIDLKKETYLRKSYCTFLQDLGM 72

Query:   189 RLELPQTTIGTAMVLCHRFFVRRSHACHDRXXXXXXXXXXXXKSEETPRPLNDVLRASSE 248
             RL++PQ TI TA++ CHRFF+R+SHA +DR            K EETPRPL DV+  S E
Sbjct:    73 RLKVPQVTIATAIIFCHRFFIRQSHARNDRRTIATVCMFLAGKVEETPRPLKDVIVVSYE 132

Query:   249 LYHKQNITLLSYLLPIDWFEQYRERVIEAEQMILTTLNFELNVQHPYDPLTSILNKLGLS 308
             + HK++ T    +   + +EQ +E ++  E+++L+TL F+ NV HPY PL   + K  ++
Sbjct:   133 IIHKKDPTTAQKIKQKEVYEQQKELILNGEKIVLSTLGFDFNVYHPYKPLVEAIKKFKVA 192

Query:   309 QTVLVNLALNLVSEG 323
             Q  L  +A N V++G
Sbjct:   193 QNALAQVAWNFVNDG 207
GO:0000079 "regulation of cyclin-dependent protein serine/threonine kinase activity" evidence=IEA
GO:0004693 "cyclin-dependent protein serine/threonine kinase activity" evidence=ISS
GO:0005634 "nucleus" evidence=ISM;IEA
GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA
GO:0019901 "protein kinase binding" evidence=IEA
GO:0051726 "regulation of cell cycle" evidence=ISS
GO:0009615 "response to virus" evidence=IEP
GO:0010090 "trichome morphogenesis" evidence=IMP
GO:0048366 "leaf development" evidence=IGI
GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA
GO:0006366 "transcription from RNA polymerase II promoter" evidence=RCA
GO:0008284 "positive regulation of cell proliferation" evidence=RCA
TAIR|locus:2122940 CYCT1;2 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2153358 AT5G45190 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2196919 CYCT1;3 "cyclin T 1;3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2008698 CYCT1;1 "cyclin T1;1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|F1RJC3 CCNL2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0286617 cycK "putative K-type cyclin" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|F2Z3J5 CCNL2 "Cyclin-L2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F2Z2C9 CCNT2 "Cyclin-T2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
POMBASE|SPBC32F12.06 pch1 "P-TEFB associated cyclin, cyclin T Pch1" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query323
COG5333 297 COG5333, CCL1, Cdk activating kinase (CAK)/RNA pol 7e-18
pfam00134127 pfam00134, Cyclin_N, Cyclin, N-terminal domain 3e-13
cd0004388 cd00043, CYCLIN, Cyclin box fold 7e-11
smart0038583 smart00385, CYCLIN, domain present in cyclins, TFI 8e-08
TIGR00569 305 TIGR00569, ccl1, cyclin ccl1 4e-04
>gnl|CDD|227640 COG5333, CCL1, Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair] Back     alignment and domain information 
 Score = 82.1 bits (203), Expect = 7e-18
 Identities = 44/141 (31%), Positives = 68/141 (48%), Gaps = 19/141 (13%)

Query: 172 ETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRFIIATAALFLAAK 231
           E +L   Y   I +L  RL LPQT + TA++   RF+++ S      + + T  ++LA K
Sbjct: 41  ELNLVIYYLKLIMDLCTRLNLPQTVLATAILFFSRFYLKNSVEEISLYSVVTTCVYLACK 100

Query: 232 SEETPRPLNDVLRASSELYHKQNITLLSYLLPIDWFEQY---RERVIEAEQMILTTLNFE 288
            E+TPR                +I++ S+     W E+    RER++E E  +L  L+F+
Sbjct: 101 VEDTPR----------------DISIESFEARDLWSEEPKSSRERILEYEFELLEALDFD 144

Query: 289 LNVQHPYDPLTSILNKLGLSQ 309
           L+V HPY  L   L  L    
Sbjct: 145 LHVHHPYKYLEGFLKDLQEKD 165

Length = 297
>gnl|CDD|215740 pfam00134, Cyclin_N, Cyclin, N-terminal domain Back     alignment and domain information
>gnl|CDD|238003 cd00043, CYCLIN, Cyclin box fold Back     alignment and domain information
>gnl|CDD|214641 smart00385, CYCLIN, domain present in cyclins, TFIIB and Retinoblastoma Back     alignment and domain information
>gnl|CDD|129660 TIGR00569, ccl1, cyclin ccl1 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 323
KOG0834 323 consensus CDK9 kinase-activating protein cyclin T 100.0
KOG0794264 consensus CDK8 kinase-activating protein cyclin C 100.0
TIGR00569 305 ccl1 cyclin ccl1. University). 100.0
KOG0835 367 consensus Cyclin L [General function prediction on 99.97
COG5333 297 CCL1 Cdk activating kinase (CAK)/RNA polymerase II 99.94
KOG2496 325 consensus Cdk activating kinase (CAK)/RNA polymera 99.72
PF00134127 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR 99.69
PRK00423310 tfb transcription initiation factor IIB; Reviewed 99.66
KOG0656 335 consensus G1/S-specific cyclin D [Cell cycle contr 99.65
cd0004388 CYCLIN Cyclin box fold. Protein binding domain fun 99.39
KOG0653 391 consensus Cyclin B and related kinase-activating p 99.31
smart0038583 CYCLIN domain present in cyclins, TFIIB and Retino 99.24
COG5024440 Cyclin [Cell division and chromosome partitioning] 99.12
KOG0655 408 consensus G1/S-specific cyclin E [Cell cycle contr 99.09
COG1405285 SUA7 Transcription initiation factor TFIIIB, Brf1 99.0
KOG1597308 consensus Transcription initiation factor TFIIB [T 98.87
PF0038271 TFIIB: Transcription factor TFIIB repeat; InterPro 98.65
KOG4164497 consensus Cyclin ik3-1/CABLES [Cell cycle control, 98.24
PRK00423310 tfb transcription initiation factor IIB; Reviewed 97.83
PF08613149 Cyclin: Cyclin; InterPro: IPR013922 Cyclins are eu 97.37
KOG0654359 consensus G2/Mitotic-specific cyclin A [Cell cycle 96.92
COG1405285 SUA7 Transcription initiation factor TFIIIB, Brf1 96.43
KOG1597308 consensus Transcription initiation factor TFIIB [T 96.08
KOG1598 521 consensus Transcription initiation factor TFIIIB, 95.54
PF01857135 RB_B: Retinoblastoma-associated protein B domain; 93.75
PF02984118 Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR 90.89
KOG0835367 consensus Cyclin L [General function prediction on 87.47
KOG1674218 consensus Cyclin [General function prediction only 81.61
KOG0834323 consensus CDK9 kinase-activating protein cyclin T 81.09
>KOG0834 consensus CDK9 kinase-activating protein cyclin T [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information 
Probab=100.00  E-value=1.3e-41  Score=326.76  Aligned_cols=173  Identities=39%  Similarity=0.660  Sum_probs=162.9

Q ss_pred             CCCCccccHHHHHHhCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhccCccccchhHHHHHH
Q 020646          145 DDEPVFMSRDEIERFSPSRKDGIDALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRFIIATA  224 (323)
Q Consensus       145 ~~~~w~fT~eEl~~~tPS~~~GIs~e~E~~lR~~~~~fI~~lg~~L~Lpq~tiaTA~vyfhRFy~r~S~~~~d~~lVAaA  224 (323)
                      ...+|+|+++|+++.+||+.+|++.+.|...|..++.||+++|++|++++.+++||++||||||+.++++.+|++.||++
T Consensus         8 ~~~~w~~s~e~~~~~tpSr~~g~~~~~E~~~r~~~~~fI~elg~~L~~~~~ti~tA~~~~hRFy~~~s~~~~~~~~vA~s   87 (323)
T KOG0834|consen    8 ETSRWYFSKEQLEENTPSRRDGIDLKKELRLRQEGAKFIQELGVRLKMPQKTIATAIVIFHRFYMFHSFKKFDPYTVAAS   87 (323)
T ss_pred             cccccccCHHHHccCChhhccCCchhHHHHHHHHHHHHHHHHHHHcCCCccchhhhhhhhhhhhhhcccccCcHHHHHHH
Confidence            35689999999988999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhccCCCCCChHHHHHHHHHHhhhhchhhhcccCChhhhHHhHHHHHHHHHHHHHHcCccceecCcHHHHHHHHHH
Q 020646          225 ALFLAAKSEETPRPLNDVLRASSELYHKQNITLLSYLLPIDWFEQYRERVIEAEQMILTTLNFELNVQHPYDPLTSILNK  304 (323)
Q Consensus       225 CLFLAcKvEE~~rkl~dVi~v~~~l~~k~~~~~~~y~~~~~~y~~~r~~IL~~E~~IL~tL~FDL~V~~P~~~L~~~l~~  304 (323)
                      |||||||+||++++++|||.+++.++++.+      ....+.|++.++.|+.+|.+||++|+|||.|+|||+||++++++
T Consensus        88 clfLAgKvEetp~kl~dIi~~s~~~~~~~~------~~~~~~~~~~~~~Iv~~E~~lL~tl~Fdl~v~hPy~~ll~~~k~  161 (323)
T KOG0834|consen   88 CLFLAGKVEETPRKLEDIIKVSYRYLNPKD------LELEEVYWELKERIVQLELLLLETLGFDLNVEHPYKYLLKYLKK  161 (323)
T ss_pred             HHHHHhhcccCcccHHHHHHHHHHHcCccc------ccHHHHHHHHHHHHHHHHHHHHHHccCceeccCchHHHHHHHHH
Confidence            999999999999999999999999887643      12346799999999999999999999999999999999999999


Q ss_pred             cCCChH---HHHHHHHHHhhCC
Q 020646          305 LGLSQT---VLVNLALNLVSEG  323 (323)
Q Consensus       305 L~ls~~---~l~q~Aw~~lND~  323 (323)
                      ++.+++   .++++||+|+||+
T Consensus       162 l~~~~~~~~~~a~~Aw~~~nD~  183 (323)
T KOG0834|consen  162 LKADENLKQPLAQAAWNFVNDS  183 (323)
T ss_pred             hhhhhhccccHHHHHHHHhchh
Confidence            998775   5999999999996

>KOG0794 consensus CDK8 kinase-activating protein cyclin C [Transcription] Back     alignment and domain information
>TIGR00569 ccl1 cyclin ccl1 Back     alignment and domain information
>KOG0835 consensus Cyclin L [General function prediction only] Back     alignment and domain information
>COG5333 CCL1 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>KOG2496 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair] Back     alignment and domain information
>PF00134 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR006671 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>PRK00423 tfb transcription initiation factor IIB; Reviewed Back     alignment and domain information
>KOG0656 consensus G1/S-specific cyclin D [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>cd00043 CYCLIN Cyclin box fold Back     alignment and domain information
>KOG0653 consensus Cyclin B and related kinase-activating proteins [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>smart00385 CYCLIN domain present in cyclins, TFIIB and Retinoblastoma Back     alignment and domain information
>COG5024 Cyclin [Cell division and chromosome partitioning] Back     alignment and domain information
>KOG0655 consensus G1/S-specific cyclin E [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG1405 SUA7 Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB [Transcription] Back     alignment and domain information
>KOG1597 consensus Transcription initiation factor TFIIB [Transcription] Back     alignment and domain information
>PF00382 TFIIB: Transcription factor TFIIB repeat; InterPro: IPR013150 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>KOG4164 consensus Cyclin ik3-1/CABLES [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PRK00423 tfb transcription initiation factor IIB; Reviewed Back     alignment and domain information
>PF08613 Cyclin: Cyclin; InterPro: IPR013922 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>KOG0654 consensus G2/Mitotic-specific cyclin A [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG1405 SUA7 Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB [Transcription] Back     alignment and domain information
>KOG1597 consensus Transcription initiation factor TFIIB [Transcription] Back     alignment and domain information
>KOG1598 consensus Transcription initiation factor TFIIIB, Brf1 subunit [Transcription] Back     alignment and domain information
>PF01857 RB_B: Retinoblastoma-associated protein B domain; InterPro: IPR002719 Retinoblastoma-like and retinoblastoma-associated proteins may have a function in cell cycle regulation Back     alignment and domain information
>PF02984 Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR004367 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>KOG0835 consensus Cyclin L [General function prediction only] Back     alignment and domain information
>KOG1674 consensus Cyclin [General function prediction only] Back     alignment and domain information
>KOG0834 consensus CDK9 kinase-activating protein cyclin T [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query323
2ivx_A257 Crystal Structure Of Human Cyclin T2 At 1.8 A Resol 3e-13
2w2h_A264 Structural Basis Of Transcription Activation By The 4e-13
3tnh_B259 Cdk9CYCLIN T IN COMPLEX WITH CAN508 Length = 259 1e-12
3mi9_B266 Crystal Structure Of Hiv-1 Tat Complexed With Human 1e-12
2pk2_A 358 Cyclin Box Structure Of The P-Tefb Subunit Cyclin T 2e-12
3blh_B260 Crystal Structure Of Human Cdk9CYCLINT1 Length = 26 8e-12
2i53_A258 Crystal Structure Of Cyclin K Length = 258 1e-10
3rgf_B285 Crystal Structure Of Human Cdk8CYCC Length = 285 7e-05
>pdb|2IVX|A Chain A, Crystal Structure Of Human Cyclin T2 At 1.8 A Resolution (Casp Target) Length = 257 Back     alignment and structure 
Iteration: 1

 Score = 72.4 bits (176), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 48/149 (32%), Positives = 75/149 (50%), Gaps = 10/149 (6%)
Query: 150 FMSRDEIERFSPSRKDGIDALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFV 209
           F +R+++E  +PSR+ G++A +E   R      IQ +G RL + Q TI TA+V  HRF++
Sbjct: 6   FFTREQLEN-TPSRRCGVEADKELSCRQQAANLIQEMGQRLNVSQLTINTAIVYMHRFYM 64
Query: 210 RRSHACHDRXXXXXXXXXXXXKSEETPRPLNDVLRASSELYHKQNITLLSYLLPID---W 266
             S    ++            K EE  R L  V++ +    H      L  LL      +
Sbjct: 65  HHSFTKFNKNIISSTALFLAAKVEEQARKLEHVIKVAHACLHP-----LEPLLDTKCDAY 119
Query: 267 FEQYRERVIEAEQMILTTLNFELNVQHPY 295
            +Q RE VI  E ++L TL FE+ ++HP+
Sbjct: 120 LQQTRELVI-LETIMLQTLGFEITIEHPH 147
>pdb|2W2H|A Chain A, Structural Basis Of Transcription Activation By The Cyclin T1-Tat-Tar Rna Complex From Eiav Length = 264 Back     alignment and structure
>pdb|3TNH|B Chain B, Cdk9CYCLIN T IN COMPLEX WITH CAN508 Length = 259 Back     alignment and structure
>pdb|3MI9|B Chain B, Crystal Structure Of Hiv-1 Tat Complexed With Human P-Tefb Length = 266 Back     alignment and structure
>pdb|2PK2|A Chain A, Cyclin Box Structure Of The P-Tefb Subunit Cyclin T1 Derived From A Fusion Complex With Eiav Tat Length = 358 Back     alignment and structure
>pdb|3BLH|B Chain B, Crystal Structure Of Human Cdk9CYCLINT1 Length = 260 Back     alignment and structure
>pdb|2I53|A Chain A, Crystal Structure Of Cyclin K Length = 258 Back     alignment and structure
>pdb|3RGF|B Chain B, Crystal Structure Of Human Cdk8CYCC Length = 285 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query323
2i53_A258 Cyclin K; cell cycle, transcription, cyclin BOX, C 1e-45
2pk2_A 358 Cyclin-T1, protein TAT; TAR, twinning, transcripti 3e-45
2ivx_A257 Cyclin-T2; transcription regulation, cell division 2e-41
3rgf_B285 Cyclin-C; protein kinase complex, transferase,tran 2e-39
1zp2_A235 RNA polymerase II holoenzyme cyclin-like subunit; 2e-36
1jkw_A 323 Cyclin H; cell cycle, cell division, nuclear prote 3e-36
1f5q_B252 Gamma herpesvirus cyclin; herpesviral cyclin, cycl 2e-05
3g33_B 306 CCND3 protein; Ser/Thr protein kinase, cell cycle, 8e-04
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Length = 258 Back     alignment and structure
 Score =  154 bits (391), Expect = 1e-45
 Identities = 44/166 (26%), Positives = 80/166 (48%), Gaps = 9/166 (5%)

Query: 150 FMSRDEIERFSPSRKDGIDALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFV 209
           +  + ++   +PS+ +G+D   E   R     FI ++G RL L   T+ T ++  HRF++
Sbjct: 16  YWDKKDLAH-TPSQLEGLDPATEARYRREGARFIFDVGTRLGLHYDTLATGIIYFHRFYM 74

Query: 210 RRSHACHDRFIIATAALFLAAKSEETPRPLNDVLRASSELYHKQNITLLSYLLPIDWFEQ 269
             S     R++     LFLA K EETP+   D+++ +  L +              + + 
Sbjct: 75  FHSFKQFPRYVTGACCLFLAGKVEETPKKCKDIIKTARSLLNDVQ--------FGQFGDD 126

Query: 270 YRERVIEAEQMILTTLNFELNVQHPYDPLTSILNKLGLSQTVLVNL 315
            +E V+  E+++L T+ F+L V+HPY  L     +L   +  +  L
Sbjct: 127 PKEEVMVLERILLQTIKFDLQVEHPYQFLLKYAKQLKGDKNKIQKL 172
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C Length = 358 Back     alignment and structure
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B* Length = 257 Back     alignment and structure
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Length = 285 Back     alignment and structure
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe} Length = 235 Back     alignment and structure
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A Length = 323 Back     alignment and structure
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1 Length = 252 Back     alignment and structure
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Length = 306 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query323
2ivx_A257 Cyclin-T2; transcription regulation, cell division 100.0
3rgf_B285 Cyclin-C; protein kinase complex, transferase,tran 100.0
2pk2_A 358 Cyclin-T1, protein TAT; TAR, twinning, transcripti 100.0
2i53_A258 Cyclin K; cell cycle, transcription, cyclin BOX, C 100.0
1zp2_A235 RNA polymerase II holoenzyme cyclin-like subunit; 99.97
1jkw_A 323 Cyclin H; cell cycle, cell division, nuclear prote 99.97
1c9b_A207 General transcription factor IIB; protein-DNA comp 99.91
2cch_B260 Cyclin A2, cyclin-A; complex(transferase/cell divi 99.87
3g33_B 306 CCND3 protein; Ser/Thr protein kinase, cell cycle, 99.87
2b9r_A 269 Human cyclin B1; cell cycle; 2.90A {Homo sapiens} 99.87
2w96_A271 G1/S-specific cyclin-D1; serine/threonine-protein 99.87
1g3n_C257 V-cyclin; cyclin-dependent kinase, INK4 inhibitor, 99.86
2f2c_A254 Cyclin homolog, V-cyclin; small molecule inhibitor 99.85
1ais_B200 TFB TFIIB, protein (transcription initiation facto 99.84
1f5q_B252 Gamma herpesvirus cyclin; herpesviral cyclin, cycl 99.81
1w98_B 283 Cyclin E, G1/S-specific cyclin E1; cell cycle, tra 99.78
3k7a_M345 Transcription initiation factor IIB; RNA polymeras 99.74
4bbr_M345 Transcription initiation factor IIB; RNA polymeras 99.49
1ais_B200 TFB TFIIB, protein (transcription initiation facto 98.07
1c9b_A207 General transcription factor IIB; protein-DNA comp 97.58
2pmi_B293 PHO85 cyclin PHO80, aminoglycoside anti; cyclin-de 97.05
3k7a_M345 Transcription initiation factor IIB; RNA polymeras 96.11
4bbr_M345 Transcription initiation factor IIB; RNA polymeras 96.0
1zp2_A235 RNA polymerase II holoenzyme cyclin-like subunit; 94.85
3rgf_B285 Cyclin-C; protein kinase complex, transferase,tran 93.59
2i53_A258 Cyclin K; cell cycle, transcription, cyclin BOX, C 92.94
2ivx_A257 Cyclin-T2; transcription regulation, cell division 91.39
2b9r_A269 Human cyclin B1; cell cycle; 2.90A {Homo sapiens} 91.14
3m03_A95 ORC6, origin recognition complex subunit 6; helix 88.47
2cch_B260 Cyclin A2, cyclin-A; complex(transferase/cell divi 87.24
3h4c_A260 Transcription factor TFIIB-like; cyclin, transcrip 86.97
2pk2_A358 Cyclin-T1, protein TAT; TAR, twinning, transcripti 86.68
2f2c_A254 Cyclin homolog, V-cyclin; small molecule inhibitor 86.09
1g3n_C257 V-cyclin; cyclin-dependent kinase, INK4 inhibitor, 84.16
1jkw_A323 Cyclin H; cell cycle, cell division, nuclear prote 83.38
2w96_A271 G1/S-specific cyclin-D1; serine/threonine-protein 82.6
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B* Back     alignment and structure
Probab=100.00  E-value=1e-35  Score=274.87  Aligned_cols=173  Identities=30%  Similarity=0.470  Sum_probs=156.6

Q ss_pred             CCCccccHHHHHHhCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhccCccccchhHHHHHHH
Q 020646          146 DEPVFMSRDEIERFSPSRKDGIDALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRFIIATAA  225 (323)
Q Consensus       146 ~~~w~fT~eEl~~~tPS~~~GIs~e~E~~lR~~~~~fI~~lg~~L~Lpq~tiaTA~vyfhRFy~r~S~~~~d~~lVAaAC  225 (323)
                      .++|+||+|||+ .+||+.+||+++.|..+|..+++||.++|.+|+|++.|+++|++|||||+.++++.++++++||+||
T Consensus         2 ~~~w~~t~e~l~-~~ps~~~g~~~~~e~~~R~~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~ac   80 (257)
T 2ivx_A            2 SSRWFFTREQLE-NTPSRRCGVEADKELSCRQQAANLIQEMGQRLNVSQLTINTAIVYMHRFYMHHSFTKFNKNIISSTA   80 (257)
T ss_dssp             CGGGSCCHHHHH-SCHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHH
T ss_pred             CCCeeecHHHHH-hChHhhcCCCHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhhCChhhhCHHHHHHHH
Confidence            357999999996 7999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhccCCCCCChHHHHHHHHHHhhhhchhhhcccCChhhhHHhHHHHHHHHHHHHHHcCccceecCcHHHHHHHHHHc
Q 020646          226 LFLAAKSEETPRPLNDVLRASSELYHKQNITLLSYLLPIDWFEQYRERVIEAEQMILTTLNFELNVQHPYDPLTSILNKL  305 (323)
Q Consensus       226 LFLAcKvEE~~rkl~dVi~v~~~l~~k~~~~~~~y~~~~~~y~~~r~~IL~~E~~IL~tL~FDL~V~~P~~~L~~~l~~L  305 (323)
                      ||||||+||+++++++++.++..+.++....   .....+.|+..+++|+.+|+.||++|+|+|.+.|||.||.+|++.+
T Consensus        81 L~lA~K~EE~p~~l~d~~~~~~~~~~~~~~~---~~~~~~~y~~~~~~I~~~E~~iL~~L~f~l~~~~P~~fl~~~~~~l  157 (257)
T 2ivx_A           81 LFLAAKVEEQARKLEHVIKVAHACLHPLEPL---LDTKCDAYLQQTRELVILETIMLQTLGFEITIEHPHTDVVKCTQLV  157 (257)
T ss_dssp             HHHHHHHTTCCCCHHHHHHHHHHHHCTTSCC---CCTTSHHHHHHHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHT
T ss_pred             HHHHhccccCCcCHHHHHHHHHHHhccCCCC---CCcchHHHHHHHHHHHHHHHHHHHHcccceEeeCcHHHHHHHHHHh
Confidence            9999999999999999999887766543211   1122356777799999999999999999999999999999999999


Q ss_pred             CCChHHHHHHHHHHhhCC
Q 020646          306 GLSQTVLVNLALNLVSEG  323 (323)
Q Consensus       306 ~ls~~~l~q~Aw~~lND~  323 (323)
                      +.+++ +.+.||.|++|+
T Consensus       158 ~~~~~-~~~~A~~~~~~s  174 (257)
T 2ivx_A          158 RASKD-LAQTSYFMATNS  174 (257)
T ss_dssp             TCCHH-HHHHHHHHHHHH
T ss_pred             CCCcH-HHHHHHHHHHhh
Confidence            99876 899999999874
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Back     alignment and structure
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C Back     alignment and structure
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe} Back     alignment and structure
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A Back     alignment and structure
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A* Back     alignment and structure
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ... Back     alignment and structure
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Back     alignment and structure
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B* Back     alignment and structure
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A Back     alignment and structure
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A Back     alignment and structure
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B* Back     alignment and structure
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae} Back     alignment and structure
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M Back     alignment and structure
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B* Back     alignment and structure
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A* Back     alignment and structure
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B* Back     alignment and structure
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae} Back     alignment and structure
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M Back     alignment and structure
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe} Back     alignment and structure
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Back     alignment and structure
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B* Back     alignment and structure
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B* Back     alignment and structure
>3m03_A ORC6, origin recognition complex subunit 6; helix turn helix, DNA binding protein, origin recognition CO DNA replication; HET: MES; 2.50A {Homo sapiens} Back     alignment and structure
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ... Back     alignment and structure
>3h4c_A Transcription factor TFIIB-like; cyclin, transcription factor TFIIB repeat; 2.30A {Trypanosoma brucei brucei} Back     alignment and structure
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C Back     alignment and structure
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A Back     alignment and structure
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A Back     alignment and structure
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 323
d2ivxa1143 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) 5e-40
d2i53a1144 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) 1e-39
d1jkwa1151 a.74.1.1 (A:11-161) Cyclin H (mcs2) {Human (Homo s 2e-27
d1f5qb1141 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesviru 3e-08
d1g3nc1132 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's sarcoma 2e-06
d1w98b2140 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human 2e-06
d1bu2a1127 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saim 4e-06
d2cchb1128 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [T 7e-05
d1aisb198 a.74.1.2 (B:1108-1205) Transcription factor IIB (T 9e-05
>d2ivxa1 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Length = 143 Back     information, alignment and structure

class: All alpha proteins
fold: Cyclin-like
superfamily: Cyclin-like
family: Cyclin
domain: Cyclin-T2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  135 bits (340), Expect = 5e-40
 Identities = 49/142 (34%), Positives = 78/142 (54%), Gaps = 4/142 (2%)

Query: 150 FMSRDEIERFSPSRKDGIDALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFV 209
           F +R+++E  +PSR+ G++A +E   R      IQ +G RL + Q TI TA+V  HRF++
Sbjct: 6   FFTREQLEN-TPSRRCGVEADKELSCRQQAANLIQEMGQRLNVSQLTINTAIVYMHRFYM 64

Query: 210 RRSHACHDRFIIATAALFLAAKSEETPRPLNDVLRASSELYHKQNITLLSYLLPIDWFEQ 269
             S    ++ II++ ALFLAAK EE  R L  V++ +    H     L +     D + Q
Sbjct: 65  HHSFTKFNKNIISSTALFLAAKVEEQARKLEHVIKVAHACLHPLEPLLDTK---CDAYLQ 121

Query: 270 YRERVIEAEQMILTTLNFELNV 291
               ++  E ++L TL FE+ +
Sbjct: 122 QTRELVILETIMLQTLGFEITI 143
>d2i53a1 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Length = 144 Back     information, alignment and structure
>d1jkwa1 a.74.1.1 (A:11-161) Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606]} Length = 151 Back     information, alignment and structure
>d1f5qb1 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesvirus 68 [TaxId: 33708]} Length = 141 Back     information, alignment and structure
>d1g3nc1 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]} Length = 132 Back     information, alignment and structure
>d1w98b2 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human (Homo sapiens) [TaxId: 9606]} Length = 140 Back     information, alignment and structure
>d1bu2a1 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} Length = 127 Back     information, alignment and structure
>d2cchb1 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [TaxId: 9913]} Length = 128 Back     information, alignment and structure
>d1aisb1 a.74.1.2 (B:1108-1205) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Length = 98 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query323
d2ivxa1143 Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} 100.0
d2i53a1144 Cyclin K {Human (Homo sapiens) [TaxId: 9606]} 100.0
d1jkwa1151 Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606 99.94
d2cchb1128 Cyclin A {Cow (Bos taurus) [TaxId: 9913]} 99.59
d1bu2a1127 Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} 99.57
d1g3nc1132 Viral cyclin {Kaposi's sarcoma-associated herpesvi 99.57
d1f5qb1141 Viral cyclin {Murine herpesvirus 68 [TaxId: 33708] 99.55
d1w98b2140 G1/S-specific cyclin-E1 {Human (Homo sapiens) [Tax 99.54
d1vola195 Transcription factor IIB (TFIIB), core domain {Hum 99.0
d1aisb198 Transcription factor IIB (TFIIB), core domain {Arc 98.89
d1aisb295 Transcription factor IIB (TFIIB), core domain {Arc 98.66
d1vola2109 Transcription factor IIB (TFIIB), core domain {Hum 98.5
d2ivxa2113 Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} 96.87
d2i53a2110 Cyclin K {Human (Homo sapiens) [TaxId: 9606]} 94.61
d2r7ga2142 Retinoblastoma tumor suppressor domains {Human (Ho 86.6
>d2ivxa1 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: Cyclin-like
superfamily: Cyclin-like
family: Cyclin
domain: Cyclin-T2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-34  Score=244.00  Aligned_cols=141  Identities=34%  Similarity=0.525  Sum_probs=128.4

Q ss_pred             CCccccHHHHHHhCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhccCccccchhHHHHHHHH
Q 020646          147 EPVFMSRDEIERFSPSRKDGIDALRETHLRYSYCAFIQNLGLRLELPQTTIGTAMVLCHRFFVRRSHACHDRFIIATAAL  226 (323)
Q Consensus       147 ~~w~fT~eEl~~~tPS~~~GIs~e~E~~lR~~~~~fI~~lg~~L~Lpq~tiaTA~vyfhRFy~r~S~~~~d~~lVAaACL  226 (323)
                      ++|+||+++|+ .+||+.+||+.++|..+|..++.||+++|.+|+||+.|+++|++||||||+++++..+++++||+|||
T Consensus         3 ~~w~~t~~~l~-~~pS~~~gi~~~~E~~~R~~~~~~i~~~~~~l~l~~~t~~~A~~l~~Rf~~~~s~~~~~~~~va~acl   81 (143)
T d2ivxa1           3 SRWFFTREQLE-NTPSRRCGVEADKELSCRQQAANLIQEMGQRLNVSQLTINTAIVYMHRFYMHHSFTKFNKNIISSTAL   81 (143)
T ss_dssp             GGGSCCHHHHH-SCHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHH
T ss_pred             CCCCCCHHHHH-hCcccccCCCHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCccccCHHHHHHHHH
Confidence            57999999997 69999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhccCCCCCChHHHHHHHHHHhhhhchhhhcccCChhhhHHhHHHHHHHHHHHHHHcCcccee
Q 020646          227 FLAAKSEETPRPLNDVLRASSELYHKQNITLLSYLLPIDWFEQYRERVIEAEQMILTTLNFELNV  291 (323)
Q Consensus       227 FLAcKvEE~~rkl~dVi~v~~~l~~k~~~~~~~y~~~~~~y~~~r~~IL~~E~~IL~tL~FDL~V  291 (323)
                      |||||+||+++++++++.+++.+.++....   .....+.|+.++++|+.+|+.||++|||||.|
T Consensus        82 ~LA~K~eE~~~~~~~ii~~~~~~~~~~~~~---~~~~~~~~~~~~~~i~~~E~~iL~~L~Fdl~V  143 (143)
T d2ivxa1          82 FLAAKVEEQARKLEHVIKVAHACLHPLEPL---LDTKCDAYLQQTRELVILETIMLQTLGFEITI  143 (143)
T ss_dssp             HHHHHHTTCCCCHHHHHHHHHHHHCTTSCC---CCTTSHHHHHHHHHHHHHHHHHHHHTTTCCCC
T ss_pred             HHHHHhccccccHHHHHHHHHHHhcccchh---hhhchhhhHHHHHHHHHHHHHHHHHcCCeeeC
Confidence            999999999999999999988776553211   11234567889999999999999999999986
>d2i53a1 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jkwa1 a.74.1.1 (A:11-161) Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cchb1 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1bu2a1 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} Back     information, alignment and structure
>d1g3nc1 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]} Back     information, alignment and structure
>d1f5qb1 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesvirus 68 [TaxId: 33708]} Back     information, alignment and structure
>d1w98b2 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vola1 a.74.1.2 (A:113-207) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1aisb1 a.74.1.2 (B:1108-1205) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d1aisb2 a.74.1.2 (B:1206-1300) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d1vola2 a.74.1.2 (A:208-316) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ivxa2 a.74.1.1 (A:150-262) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2i53a2 a.74.1.1 (A:158-267) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2r7ga2 a.74.1.3 (A:644-785) Retinoblastoma tumor suppressor domains {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure