Citrus Sinensis ID: 020686

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320--
Protein Sequence
MGISSTCFIPLLFLSLIAGCAARPLYPLPSKLDIHKQPLQTSRPYNLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVNTTGFFVVDFTLEELKTLRAKQRYSFRDQQYNGKFPIITFEEYISIALDAQRVVGIYPEMKNPVFINQHVKWADGKKFEDKFVDTLKKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTDSPKIFLIDDVDILTEDTNQSYSEITSDAYLNYIKEYCVGIGPWKDTVVPVANNYSQTPTDLVARAHALDLQIHIGNTTTG
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccEEEEcccccccccccHHHHHHHHHHccccEEEccccccccccEEEEccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccHHHHHHHHHHccccccEEEEEcccccccccccccccccHHHHHHHHHHHccccccccccccccccEEEEcccHHHHHHHHHcccccEEEEEcccccccccccccccccccHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHccccEEEEccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccEEEEEcccccccccccHHHHHHHHHccccEEEEEEEEcccccEEEcccccccccccccccccccccccEEEEcccccccEEEEHccHHHHHHHHcHccccccccccccccccccHHHHHHHHHHcccEEEEEccccccHHHHHHEcccccccHHHHHHHHHHHcccccccccHHHccccEEEEEccHHHHHHHHHHccccEEEEEcccccccccccccHHHHccHHHHHHHHHHHccccccccEEEEccccccccccHHHHHHHHcccEEEEEEcccc
Coil and Loop (DISEMBL)
mgisstcfIPLLFLSLIAgcaarplyplpskldihkqplqtsrpynlahrgsngefpeETAAAYMRAIEEGADFietdilaskdgvlichhdvflddttniadhkefADRKRtcmvqgvnttgfFVVDFTLEELKTLRAKQrysfrdqqyngkfpiiTFEEYISIALDAQRvvgiypemknpvfinqhvkwadgkkfEDKFVDTLKKYgykgaymskewlkqpifiqsfaptslvyisnktdspkifliddvdiltedtnqsyseITSDAYLNYIKEYCvgigpwkdtvvpvannysqtptDLVARAHALDLQIhigntttg
Flexible Loop (DISEMBL)
MGISSTCFIPLLFLSLIAGCAARPLYPLPSKLDIHKQPLQTSRPYNLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVNTTGFFVVDFTLEELKTLrakqrysfrdqqyngkFPIITFEEYISIALDAQRVVGIYPEMKNPVFINqhvkwadgkkfEDKFVDTLKKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTDSPKIFLIDDVDILTEDTNQSYSEITSDAYLNYIKEYCVGIGPWKDTVVPVANNYSQTPTDLVARAHALDLQIHIGNTTTG
Low Complexity Region (SEG)
MGISSTCFIPLLFLSLIAGCAARPLYPLPSKLDIHKQPLQTSRPYNLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVNTTGFFVVDFTLEELKTLRAKQRYSFRDQQYNGKFPIITFEEYISIALDAQRVVGIYPEMKNPVFINQHVKWADGKKFEDKFVDTLKKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTDSPKIFLIDDVDILTEDTNQSYSEITSDAYLNYIKEYCVGIGPWKDTVVPVANNYSQTPTDLVARAHALDLQIHIGNTTTG
Disordered region (IsUnstruct)
*****TCFIPLLFLSLIAGCAARPLYPLPSKLDI**************************AAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVNTTGFFVVDFTLEELKTLRAKQRYSFRDQQYNGKFPIITFEEYISIALDAQRVVGIYPEMKNPVFINQHVKWADGKKFEDKFVDTLKKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTDSPKIFLIDDVDILTEDTNQSYSEITSDAYLNYIKEYCVGIGPWKDTVVPVANNYSQTPTDLVARAHALDLQIHIG*****
Disordered Region (DISOPRED)
*****TC*IPLLFLSLIAGCAARPLY****************RPYNLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVNTTGFFVVDFTLEELKTLRAKQRYSFRDQQYNGKFPIITFEEYISIALDAQRVVGIYPEMKNPVFINQHVKWADGKKFEDKFVDTLKKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTDSPKIFLIDDVDILTEDTNQSYSEITSDAYLNYIKEYCVGIGPWKDTVVPVANNYSQTPTDLVARAHALDLQIHIGNTTT*
Disordered Region (DISEMBL)
MGISSTCFIPLLFLSLIAGCAARPLYPLPSKLDIHKQPLQTSRPYNLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVNTTGFFVVDFTLEELKTLRAKQRYSFRDQQYNGKFPIITFEEYISIALDAQRVVGIYPEMKNPVFINQHVKWADGKKFEDKFVDTLKKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTDSPKIFLIDDVDILTEDTNQSYSEITSDAYLNYIKEYCVGIGPWKDTVVPVANNYSQTPTDLVARAHALDLQIHIGNTTTG
Disordered Region (DISPRO)
*GISSTCFIPLLFLSLIAGCAARPLYPLPSK**IHKQPLQTSRPYNLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVNTTGFFVVDFTLEELKTLRAKQRYSFRDQQYNGKFPIITFEEYISIALDAQRVVGIYPEMKNPVFINQHVKWADGKKFEDKFVDTLKKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTDSPKIFLIDDVDILTEDTNQSYSEITSDAYLNYIKEYCVGIGPWKDTVVPVANNYSQTPTDLVARAHALDLQIHIGNTT**
Transmembrane Helix (TMHMM)
iiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGISSTCFIPLLFLSLIAGCAARPLYPLPSKLDIHKQPLQTSRPYNLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVNTTGFFVVDFTLEELKTLRAKQRYSFRDQQYNGKFPIITFEEYISIALDAQRVVGIYPEMKNPVFINQHVKWADGKKFEDKFVDTLKKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTDSPKIFLIDDVDILTEDTNQSYSEITSDAYLNYIKEYCVGIGPWKDTVVPVANNYSQTPTDLVARAHALDLQIHIGNTTTG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	322	2.2.26 [Sep-21-2011]
P09394	358	Glycerophosphoryl diester	N/A	no	0.673	0.606	0.303	3e-24
Q06282	364	Glycerophosphoryl diester	yes	no	0.568	0.502	0.313	5e-19
O30405	356	Glycerophosphoryl diester	yes	no	0.760	0.688	0.258	1e-17
P96236	274	Probable glycerophosphory	yes	no	0.630	0.740	0.265	6e-15
Q9FJ62	766	Probable glycerophosphory	no	no	0.757	0.318	0.213	1e-12
Q9SZ11	759	Probable glycerophosphory	no	no	0.739	0.313	0.223	3e-11
P37965	293	Glycerophosphoryl diester	yes	no	0.621	0.682	0.276	5e-11
Q7Y208	763	Probable glycerophosphory	no	no	0.763	0.322	0.208	3e-09
P54527	243	Uncharacterized protein Y	no	no	0.388	0.514	0.302	4e-09
O07592	243	Putative glycerophosphory	no	no	0.245	0.325	0.37	1e-07

>sp|P09394|GLPQ_ECOLI Glycerophosphoryl diester phosphodiesterase OS=Escherichia coli (strain K12) GN=glpQ PE=1 SV=2

 Score =  112 bits (281), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 81/267 (30%), Positives = 130/267 (48%), Gaps = 50/267 (18%)

Query: 47  LAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKE 106
           +AHRG++G  PE T  A   A  +GAD++E D++ +KD  L+  HD +LD  T++AD   
Sbjct: 34  IAHRGASGYLPEHTLPAKAMAYAQGADYLEQDLVMTKDDNLVVLHDHYLDRVTDVAD--R 91

Query: 107 FADRKRTCMVQGVNTTGFFVVDFTLEELKTLRAKQRYSFRD----QQYNGKFP------- 155
           F DR R           ++ +DFTL+E+K+L+  + +   +    Q Y G+FP       
Sbjct: 92  FPDRAR-------KDGRYYAIDFTLDEIKSLKFTEGFDIENGKKVQTYPGRFPMGKSDFR 144

Query: 156 IITFEEYI----SIALDAQRVVGIYPEMKNPVFINQHVKWADGKKFEDKFVDTLKKYGYK 211
           + TFEE I     +     + +GIYPE+K P F +Q     +GK    K ++ LKKYGY 
Sbjct: 145 VHTFEEEIEFVQGLNHSTGKNIGIYPEIKAPWFHHQ-----EGKDIAAKTLEVLKKYGYT 199

Query: 212 GAYMSKEWLKQPIFIQSFAPTSLVYISNKTDSPKIFLIDDVDILT-EDTNQSYSEITSDA 270
           G           +++Q F    L  I N+ +      ++ V ++   D N++  +    +
Sbjct: 200 GK-------DDKVYLQCFDADELKRIKNELEPKMGMELNLVQLIAYTDWNETQQKQPDGS 252

Query: 271 YLNY-------------IKEYCVGIGP 284
           ++NY             + EY  GIGP
Sbjct: 253 WVNYNYDWMFKPGAMKQVAEYADGIGP 279

Glycerophosphoryl diester phosphodiesterase hydrolyzes deacylated phospholipids to G3P and the corresponding alcohols.
Escherichia coli (strain K12) (taxid: 83333)
EC: 3EC: .EC: 1EC: .EC: 4EC: .EC: 4EC: 6

>sp|Q06282|GLPQ_HAEIN Glycerophosphoryl diester phosphodiesterase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=glpQ PE=1 SV=1

 Score = 95.5 bits (236), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 69/220 (31%), Positives = 110/220 (50%), Gaps = 37/220 (16%)

Query: 6   TCFIPLLFLSLIAGCAARPLYPLPSKLDIHKQPLQTSRPYNLAHRGSNGEFPEETAAAYM 65
           T  + LL   ++AGC++       +++         S    +AHRG++G  PE T  +  
Sbjct: 5   TLALSLLAAGVLAGCSSHSSNMANTQM--------KSDKIIIAHRGASGYLPEHTLESKA 56

Query: 66  RAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVNTTGFF 125
            A  + +D++E D+  +KDG L+  HD FLD  T++A  K+F  R R           ++
Sbjct: 57  LAFAQHSDYLEQDLAMTKDGRLVVIHDHFLDGLTDVA--KKFPYRHR-------KDGRYY 107

Query: 126 VVDFTLEELKTLRAKQRYSFRD----QQYNGKFP-------IITFEEYI----SIALDAQ 170
           V+DFTL+E+++L   + +  +D    Q Y  +FP       I TFE+ I     +     
Sbjct: 108 VIDFTLKEIQSLEMTENFETKDGKQAQVYPNRFPLWKSHFRIHTFEDEIEFIQGLEKSTG 167

Query: 171 RVVGIYPEMKNPVFINQHVKWADGKKFEDKFVDTLKKYGY 210
           + VGIYPE+K P F +Q     +GK    + +  LKKYGY
Sbjct: 168 KKVGIYPEIKAPWFHHQ-----NGKDIATETLKVLKKYGY 202

Glycerophosphoryl diester phosphodiesterase hydrolyzes deacylated phospholipids to G3P and the corresponding alcohols. Has a specific affinity for human immunoglobulin D myeloma protein.

Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) (taxid: 71421)

EC: 3

EC: .

EC: 1

EC: .

EC: 4

EC: .

EC: 4

EC: 6

>sp|O30405|GLPQ_TREPA Glycerophosphoryl diester phosphodiesterase OS=Treponema pallidum (strain Nichols) GN=glpQ PE=3 SV=1

 Score = 91.3 bits (225), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 82/317 (25%), Positives = 141/317 (44%), Gaps = 72/317 (22%)

Query: 12  LFLSLIAGCAARPLYPLPSKLDIHKQPLQTSRPYNLAHRGSNGEFPEETAAAYMRAIEEG 71
           +F +L+AGCA+  +                     +A+RG+ G  PE T A+ + A  +G
Sbjct: 13  VFAALVAGCASERMI--------------------VAYRGAAGYVPEHTFASKVLAFAQG 52

Query: 72  ADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVNTTGFFVVDFTL 131
           AD+++ D++ SKD  LI      LD+ T++A+  +F  R+R           F+V+DFT+
Sbjct: 53  ADYLQQDVVLSKDNQLIVAQSHILDNMTDVAE--KFPRRQRA-------DGHFYVIDFTV 103

Query: 132 EELKTLRAKQRYSFRDQQ----YNGKFPII-------TFEEYISIALDAQRV----VGIY 176
           EEL  LRA   +  R ++    Y  +FP+        TFEE +      ++     +GIY
Sbjct: 104 EELSLLRATNSFYTRGKRHTPVYGQRFPLWKPGFRLHTFEEELQFIRGLEQTTGKKIGIY 163

Query: 177 PEMKNPVFINQHVKWADGKKFEDKFVDTLKKYGYKGAYMSKEWLKQPIFIQSFAPTSLVY 236
            E+K P F +Q     +GK      +  LKKYGY+            +++Q++    L  
Sbjct: 164 SEIKVPWFHHQ-----EGKDIAALTLALLKKYGYQSR-------SDLVYVQTYDFNELKR 211

Query: 237 IS---------NKTDSPKIFLIDDVDILTEDT-----NQSYSEITSDAYLNYIKEYCVGI 282
           I          N     ++   D  +   +D+     N +Y+ +     +  I +Y  G+
Sbjct: 212 IKRELLPKYEMNVKLIQRVAYTDQRETQEKDSRGKWINYNYNWMFEPGGMQKIAKYADGV 271

Query: 283 GPWKDTVVPVANNYSQT 299
           GP  D  + + N +S+ 
Sbjct: 272 GP--DWRMLIENEWSKV 286

Glycerophosphoryl diester phosphodiesterase hydrolyzes deacylated phospholipids to G3P and the corresponding alcohols.

Treponema pallidum (strain Nichols) (taxid: 243276)

EC: 3

EC: .

EC: 1

EC: .

EC: 4

EC: .

EC: 4

EC: 6

>sp|P96236|GLPQ1_MYCTU Probable glycerophosphoryl diester phosphodiesterase 1 OS=Mycobacterium tuberculosis GN=glpQ1 PE=2 SV=3

 Score = 82.0 bits (201), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 63/237 (26%), Positives = 100/237 (42%), Gaps = 34/237 (14%)

Query: 44  PYNLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIAD 103
           P+ +AHRG++   PE T AAY  A++EGAD +E D+  ++DG L+C HD  LD T+    
Sbjct: 12  PFVVAHRGASAARPEHTLAAYDLALKEGADGVECDVRLTRDGHLVCVHDRRLDRTS---- 67

Query: 104 HKEFADRKRTCMVQGVNTTGFFVVDFTLEELKTLRAKQRY-SFRDQQYNGKFPIITFEEY 162
                            T    V   TL +L+ L     + S+R    +G   ++T +  
Sbjct: 68  -----------------TGAGLVSTMTLAQLRELEYGAWHDSWRPDGSHGDTSLLTLDAL 110

Query: 163 ISIALDAQRVVGIYPEMKNPVFINQHVKWADGKKFEDKFVDTLKKYGYKGAYMSKEWLKQ 222
           +S+ LD  R V I+ E K+PV          G   E+K +  L ++G      +    + 
Sbjct: 111 VSLVLDWHRPVKIFVETKHPVRY--------GSLVENKLLALLHRFGIAAPASAD---RS 159

Query: 223 PIFIQSFAPTSLVYISNKTD-SPKIFLIDDVDILTEDTNQSYSEITSDAYLNYIKEY 278
              + SF+  ++  I       P + L      LT     +         L  +KEY
Sbjct: 160 RAVVMSFSAAAVWRIRRAAPLLPTVLLGKTPRYLTSSAATAVGATAVGPSLPALKEY 216

Glycerophosphoryl diester phosphodiesterase hydrolyzes deacylated phospholipids to G3P and the corresponding alcohols.

Mycobacterium tuberculosis (taxid: 1773)

EC: 3

EC: .

EC: 1

EC: .

EC: 4

EC: .

EC: 4

EC: 6

>sp|Q9FJ62|GLPQ1_ARATH Probable glycerophosphoryl diester phosphodiesterase 1 OS=Arabidopsis thaliana GN=GPDL1 PE=1 SV=1

 Score = 73.9 bits (180), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/281 (21%), Positives = 129/281 (45%), Gaps = 37/281 (13%)

Query: 47  LAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKE 106
           ++  G++G++P  T  AY +AI++GAD I+  +  S DG+  C   + L ++TN+     
Sbjct: 368 ISKNGASGDYPGCTDLAYTKAIKDGADVIDCSLQMSSDGIPFCLSSINLGESTNVV-QSP 426

Query: 107 FADRKRTCMVQGVNTTGFFVVDFTLEELKTLR-------AKQRYSFRD--QQYNGKFPII 157
           F +R  T    G +  G +       E++TLR       +++   FR+  ++ +GKF  +
Sbjct: 427 FRNRSTTVPEIG-SLPGIYSFSLAWSEIQTLRPAIENPYSREFTMFRNPRERSSGKF--V 483

Query: 158 TFEEYISIALDAQRVVGIYPEMKNPVFINQHVKWADGKKFEDKFVDTLKKYGYKGAYMSK 217
           +  +++++A ++  + G+   ++N  ++ +      G       +DTL + GY     + 
Sbjct: 484 SLSDFLNLAKNSSSLTGVLISVENATYLREK----QGLDAVKAVLDTLTEAGYSNKTTTT 539

Query: 218 EWLKQPIFIQSFAPTSLVYISNKTDSPKIFLIDDV--DILTEDTNQSYSEITSDAYLNYI 275
                 + IQS   + L+    ++    ++ +++   DIL             D  +  I
Sbjct: 540 R-----VMIQSTNSSVLIDFKKQSRYETVYKVEETIRDIL-------------DTAIEDI 581

Query: 276 KEYCVGIGPWKDTVVPVANNYSQTPTDLVARAHALDLQIHI 316
           K++   +   K +V P + +++   T LV R     L +++
Sbjct: 582 KKFADAVVISKKSVFPTSESFTTGQTKLVERLQKFQLPVYV 622

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 1

EC: .

EC: 4

EC: .

EC: 4

EC: 6

>sp|Q9SZ11|GLPQ2_ARATH Probable glycerophosphoryl diester phosphodiesterase 2 OS=Arabidopsis thaliana GN=GPDL2 PE=1 SV=3

 Score = 69.3 bits (168), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 62/277 (22%), Positives = 126/277 (45%), Gaps = 39/277 (14%)

Query: 51  GSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADR 110
           G++G++P  T  AY +AI++GAD I+  +  S DG   C   + L ++T ++     A R
Sbjct: 367 GASGDYPGCTDLAYKKAIKDGADVIDCSVQLSSDGTPFCLSSIDLGNSTTVSLT---AFR 423

Query: 111 KRTCMVQGVNTTG-FFVVDFTLEELKTL--------RAKQRYSFRDQQYNGKFPIITFEE 161
            R+  V  + + G  +    T  E++TL        R    +    Q+  GK  + +  +
Sbjct: 424 NRSTTVPELGSLGAIYTFSLTWAEIQTLTPAISNPYRVTSLFRNPKQKNAGK--LFSLSD 481

Query: 162 YISIALDAQRVVGIYPEMKNPVFINQHVKWADGKKFEDKFVDTLKKYGYKGAYMSKEWLK 221
           ++S+A ++  + G+   ++N  ++ +      G       +DTL + GY  +  +K    
Sbjct: 482 FLSLAKNSTSLSGVLISVENAAYLREE----QGLDVVKAVLDTLTQTGYSNSTATK---- 533

Query: 222 QPIFIQSFAPTSLVYISNKTDSPKIFLIDD--VDILTEDTNQSYSEITSDAYLNYIKEYC 279
             + IQS   + LV    ++    ++ +++   DIL             D+ +  IK++ 
Sbjct: 534 --VMIQSTNSSVLVDFKKQSQYETVYKVEENIRDIL-------------DSAIEDIKKFA 578

Query: 280 VGIGPWKDTVVPVANNYSQTPTDLVARAHALDLQIHI 316
             +   K +V PVA ++  T T++V +     L +++
Sbjct: 579 DAVVIQKLSVFPVAQSFITTQTNVVEKLQKSQLPVYV 615

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 1

EC: .

EC: 4

EC: .

EC: 4

EC: 6

>sp|P37965|GLPQ_BACSU Glycerophosphoryl diester phosphodiesterase OS=Bacillus subtilis (strain 168) GN=glpQ PE=3 SV=1

 Score = 68.9 bits (167), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 69/250 (27%), Positives = 109/250 (43%), Gaps = 50/250 (20%)

Query: 39  LQTSRPYNLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDT 98
           L   R   +AHRG++G  PE T  +Y  A +  ADFIE D+  +KDG LI  HD  LD T
Sbjct: 33  LSPDRILTVAHRGASGYVPEHTILSYETAQKMKADFIELDLQMTKDGKLIVMHDEKLDRT 92

Query: 99  TNIADHKEFADRKRTCMVQGVNTTGFFVVDFTLEELKTLRAKQRYSFRDQQYNGKFPIIT 158
           TN                 G+     +V D TL ++K L A          +N  +P   
Sbjct: 93  TN-----------------GMG----WVKDHTLADIKKLDA-------GSWFNEAYPEKA 124

Query: 159 FEEYISIALDA-QRVVGIYPEMKNPVFINQHVKWADGKKFEDKFVDTLKKYGYKGAYMSK 217
             +Y+ + +   + V+  + +  N     +      G   E+K + +L+K+   G +   
Sbjct: 125 KPQYVGLKVPTLEEVLDRFGKHANYYIETKSPDTYPG--MEEKLIASLQKHKLLGKH--- 179

Query: 218 EWLKQP--IFIQSFAPTSLVYISN-KTDSPKIFLIDDVDILTEDTNQSYSEITSDAYLNY 274
               +P  + IQSF+  SLV +   + + P + L++   + +           +DA L  
Sbjct: 180 ---SKPGQVIIQSFSKESLVKVHQLQPNLPTVQLLEAKQMAS----------MTDAALEE 226

Query: 275 IKEYCVGIGP 284
           IK Y VG GP
Sbjct: 227 IKTYAVGAGP 236

Glycerophosphoryl diester phosphodiesterase hydrolyzes deacylated phospholipids to G3P and the corresponding alcohols.

Bacillus subtilis (strain 168) (taxid: 224308)

EC: 3

EC: .

EC: 1

EC: .

EC: 4

EC: .

EC: 4

EC: 6

>sp|Q7Y208|GLPQ3_ARATH Probable glycerophosphoryl diester phosphodiesterase 3 OS=Arabidopsis thaliana GN=GPDL3 PE=1 SV=2

 Score = 62.8 bits (151), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 58/278 (20%), Positives = 124/278 (44%), Gaps = 32/278 (11%)

Query: 47  LAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKE 106
           ++  G++G++P  T  AY +AI++GAD I+  +  S DGV  C   + L ++  IA  + 
Sbjct: 369 ISKDGASGDYPGCTDLAYEKAIKDGADVIDCSVQMSSDGVPFCLRSIDLRNS--IAALQN 426

Query: 107 FADRKRTCMVQGVNTTGFFVVDFTLEELKTLRAKQRYSFR--------DQQYNGKFPIIT 158
               + T + +  +  G F    T  E+++L       FR         ++ +GK  +I+
Sbjct: 427 TFSNRSTSVPEISSVPGIFTFSLTWPEIQSLTPAISNPFRVYRIFRNPREKNSGK--LIS 484

Query: 159 FEEYISIALDAQRVVGIYPEMKNPVFINQHVKWADGKKFEDKFVDTLKKYGYKGAYMSKE 218
             +++ +A     + G+   ++N  ++ +      G       +DTL + GY     + +
Sbjct: 485 LSQFLDLAKTYTSLSGVLISVENAAYLREK----QGLDVVQAVLDTLTEAGYSNGTTTTK 540

Query: 219 WLKQPIFIQSFAPTSLVYISNKTDSPKIFLIDDVDILTEDTNQSYSEITSDAYLNYIKEY 278
                + IQS   + LV    ++    ++ I+          ++   I  D+ +  IK++
Sbjct: 541 -----VMIQSTNSSVLVDFKKQSKYETVYKIE----------ETIGNI-RDSAIEDIKKF 584

Query: 279 CVGIGPWKDTVVPVANNYSQTPTDLVARAHALDLQIHI 316
              +   KD+V P ++++    T++V R     L +++
Sbjct: 585 ANAVVINKDSVFPNSDSFLTGQTNVVERLQKSQLPVYV 622

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 1

EC: .

EC: 4

EC: .

EC: 4

EC: 6

>sp|P54527|YQIK_BACSU Uncharacterized protein YqiK OS=Bacillus subtilis (strain 168) GN=yqiK PE=4 SV=2

 Score = 62.4 bits (150), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 83/162 (51%), Gaps = 37/162 (22%)

Query: 48  AHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEF 107
           AHRG++G+FPE T  A+ + IE GAD IE D+  +KDG ++  HD  L+ TT++      
Sbjct: 6   AHRGASGQFPENTMLAFEKGIEAGADGIELDVQLTKDGRIVVIHDERLNRTTSLKG---- 61

Query: 108 ADRKRTCMVQGVNTTGFFVVDFTLEELKTLRAKQRYSFRDQQYNG-KFPIITFEEYISIA 166
                            FV D   +E+KT  A   +   DQ Y+  K P++  E+ +S A
Sbjct: 62  -----------------FVKDTAYDEVKTANAAAGH---DQAYSDIKVPLL--EDVLSWA 99

Query: 167 LDAQRVVGIYPEMKNPVFINQHVKWADGKKFEDKFVDTLKKY 208
           +    ++ I  E+KN V     +++   +  E+K ++ +K++
Sbjct: 100 VKKDFLINI--ELKNSV-----IRY---EGMEEKVLEAVKRF 131

Bacillus subtilis (strain 168) (taxid: 224308)

>sp|O07592|YHDW_BACSU Putative glycerophosphoryl diester phosphodiesterase YhdW OS=Bacillus subtilis (strain 168) GN=yhdW PE=3 SV=1

 Score = 57.8 bits (138), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/100 (37%), Positives = 50/100 (50%), Gaps = 21/100 (21%)

Query: 45  YNLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADH 104
           Y +AHRG++G  PE T AA+  A++  AD IE D+  +KD  ++  HD  +D TTN +  
Sbjct: 2   YIIAHRGASGYAPENTIAAFDLAVKMNADMIELDVQLTKDRQIVVIHDDRVDRTTNGSG- 60

Query: 105 KEFADRKRTCMVQGVNTTGFFVVDFTLEELKTLRAKQRYS 144
                               FV DFTLEEL+ L A   Y 
Sbjct: 61  --------------------FVKDFTLEELQKLDAGSWYG 80

Glycerophosphoryl diester phosphodiesterase hydrolyzes deacylated phospholipids to sn-glycerol 3-phosphate (G3P) and the corresponding alcohols.

Bacillus subtilis (strain 168) (taxid: 224308)

EC: 3

EC: .

EC: 1

EC: .

EC: 4

EC: .

EC: 4

EC: 6

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	322
255547185	446	glycerophosphoryl diester phosphodiester	0.959	0.692	0.809	1e-147
224130036	399	predicted protein [Populus trichocarpa]	0.972	0.784	0.796	1e-147
408689044	399	phospholipase C3 [Populus tomentosa]	0.972	0.784	0.790	1e-146
118486622	399	unknown [Populus trichocarpa]	0.972	0.784	0.793	1e-146
225457190	395	PREDICTED: glycerophosphoryl diester pho	0.972	0.792	0.789	1e-144
15241502	372	glycerophosphoryl diester phosphodiester	0.928	0.803	0.816	1e-143
297810905	372	predicted protein [Arabidopsis lyrata su	0.925	0.801	0.810	1e-141
157890956	372	glycerophosphodiester phosphodiesterase	0.928	0.803	0.81	1e-141
359807255	392	uncharacterized protein LOC100778145 pre	0.968	0.795	0.753	1e-138
300637793	396	glycerophosphodiester phosphodiesterase	0.968	0.787	0.750	1e-137

>gi|255547185|ref|XP_002514650.1| glycerophosphoryl diester phosphodiesterase, putative [Ricinus communis] gi|223546254|gb|EEF47756.1| glycerophosphoryl diester phosphodiesterase, putative [Ricinus communis]

 Score =  528 bits (1360), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 251/310 (80%), Positives = 277/310 (89%), Gaps = 1/310 (0%)

Query: 7   CFIPLLFLSLIAGCAARPLYPLPSKLDI-HKQPLQTSRPYNLAHRGSNGEFPEETAAAYM 65
            FI ++ LS I  C+ RP+YPLPSK+   ++QPLQTSRPYN+AHRGSNGE PEETAAAYM
Sbjct: 58  SFITIILLSFIFVCSGRPIYPLPSKISHGNRQPLQTSRPYNIAHRGSNGEIPEETAAAYM 117

Query: 66  RAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVNTTGFF 125
           RAIEEGADFIETDIL+SKDGVLIC HDV LDDTT+IA HKEFADRKRT  VQGVNTTGFF
Sbjct: 118 RAIEEGADFIETDILSSKDGVLICFHDVTLDDTTDIAQHKEFADRKRTYEVQGVNTTGFF 177

Query: 126 VVDFTLEELKTLRAKQRYSFRDQQYNGKFPIITFEEYISIALDAQRVVGIYPEMKNPVFI 185
            VDFT +ELK LR KQRYSFRDQQYNGKFPIITFEE+ISIALDAQRV+GIYPE+KNPV I
Sbjct: 178 TVDFTFKELKKLRVKQRYSFRDQQYNGKFPIITFEEFISIALDAQRVIGIYPEIKNPVLI 237

Query: 186 NQHVKWADGKKFEDKFVDTLKKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTDSPK 245
           NQHVKW  GK+FED FV+TL+KYGYKG+YMSK+WLKQP+FIQSFAPTSLVYISN TDSPK
Sbjct: 238 NQHVKWPGGKRFEDVFVETLRKYGYKGSYMSKDWLKQPVFIQSFAPTSLVYISNLTDSPK 297

Query: 246 IFLIDDVDILTEDTNQSYSEITSDAYLNYIKEYCVGIGPWKDTVVPVANNYSQTPTDLVA 305
           IFLIDDV I T+DT+QSY EITSDAYL+Y+KEY VGIGPWKDTVVPV NNY Q PTDLVA
Sbjct: 298 IFLIDDVTIPTQDTDQSYWEITSDAYLDYVKEYVVGIGPWKDTVVPVVNNYLQEPTDLVA 357

Query: 306 RAHALDLQIH 315
           RAH+ DLQ+H
Sbjct: 358 RAHSHDLQVH 367

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224130036|ref|XP_002328638.1| predicted protein [Populus trichocarpa] gi|222838814|gb|EEE77165.1| predicted protein [Populus trichocarpa]

 Score =  527 bits (1358), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 255/320 (79%), Positives = 281/320 (87%), Gaps = 7/320 (2%)

Query: 3   ISSTC------FIPLLFLSLIAGCAARPLYPLPSKLDI-HKQPLQTSRPYNLAHRGSNGE 55
           +SSTC      F P+LFLSL+  CAARP+YPLPSK+   ++ PLQTSRPYN+AHRGSNGE
Sbjct: 1   MSSTCSGFGFGFAPILFLSLVVACAARPIYPLPSKVSHGNRLPLQTSRPYNIAHRGSNGE 60

Query: 56  FPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCM 115
            PEET+AAYMRAIEEGADFIETDIL+SKDGVLIC HDV LDDTT+IADHKEFA+RKRT  
Sbjct: 61  IPEETSAAYMRAIEEGADFIETDILSSKDGVLICFHDVTLDDTTDIADHKEFANRKRTYD 120

Query: 116 VQGVNTTGFFVVDFTLEELKTLRAKQRYSFRDQQYNGKFPIITFEEYISIALDAQRVVGI 175
           VQGVNTTGFF VDFTL ELK LR KQRYSFRDQQYNG FPIITFEE+ISIALDA RVVGI
Sbjct: 121 VQGVNTTGFFTVDFTLTELKLLRVKQRYSFRDQQYNGMFPIITFEEFISIALDAPRVVGI 180

Query: 176 YPEMKNPVFINQHVKWADGKKFEDKFVDTLKKYGYKGAYMSKEWLKQPIFIQSFAPTSLV 235
           YPE+KNP+ INQHVKW DGKKFEDKFV  LKKYGY+G+YMS+ WLKQP+FIQSFAPTSLV
Sbjct: 181 YPEIKNPILINQHVKWPDGKKFEDKFVGILKKYGYRGSYMSENWLKQPLFIQSFAPTSLV 240

Query: 236 YISNKTDSPKIFLIDDVDILTEDTNQSYSEITSDAYLNYIKEYCVGIGPWKDTVVPVANN 295
           YISN TDSPKIFLIDDV I T+DTNQSY EITSDAYL+YIK+Y VGIGPWKDT+VPV  N
Sbjct: 241 YISNLTDSPKIFLIDDVTIPTQDTNQSYWEITSDAYLDYIKDYVVGIGPWKDTIVPVGKN 300

Query: 296 YSQTPTDLVARAHALDLQIH 315
           Y Q P++LVARAHA DLQ+H
Sbjct: 301 YLQIPSNLVARAHAHDLQVH 320

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|408689044|gb|AFU81122.1| phospholipase C3 [Populus tomentosa]

 Score =  525 bits (1352), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 253/320 (79%), Positives = 281/320 (87%), Gaps = 7/320 (2%)

Query: 3   ISSTC------FIPLLFLSLIAGCAARPLYPLPSKLDI-HKQPLQTSRPYNLAHRGSNGE 55
           +SSTC      F P+LFLSL+  CAARP+YPLPSK+   ++ P+QTSRPYN+AHRGSNGE
Sbjct: 1   MSSTCSGFGFGFAPILFLSLVVACAARPIYPLPSKVSHGNRLPIQTSRPYNIAHRGSNGE 60

Query: 56  FPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCM 115
            PEET+AAYMRAIEEGADFIETDIL+SKDGVLIC HDV LDDTT+IADHKEFA+RKRT  
Sbjct: 61  IPEETSAAYMRAIEEGADFIETDILSSKDGVLICFHDVTLDDTTDIADHKEFANRKRTYD 120

Query: 116 VQGVNTTGFFVVDFTLEELKTLRAKQRYSFRDQQYNGKFPIITFEEYISIALDAQRVVGI 175
           VQGVNTTGFF VDFTL ELK LR KQRYSFRDQQYNG FPIITFEE+ISIALDA RVVGI
Sbjct: 121 VQGVNTTGFFTVDFTLTELKLLRVKQRYSFRDQQYNGMFPIITFEEFISIALDAPRVVGI 180

Query: 176 YPEMKNPVFINQHVKWADGKKFEDKFVDTLKKYGYKGAYMSKEWLKQPIFIQSFAPTSLV 235
           YPE+KNP+ INQHVKW DGKKFEDKFV  LKKYGYKG+YMS+ WLKQP+FIQSFAPTSLV
Sbjct: 181 YPEIKNPILINQHVKWPDGKKFEDKFVGILKKYGYKGSYMSENWLKQPLFIQSFAPTSLV 240

Query: 236 YISNKTDSPKIFLIDDVDILTEDTNQSYSEITSDAYLNYIKEYCVGIGPWKDTVVPVANN 295
           Y+SN TDSPKIFLIDDV I T+DTNQSY EITSDAYL+YIK+Y VGIGPWKDT+VPV  N
Sbjct: 241 YVSNLTDSPKIFLIDDVTIPTQDTNQSYWEITSDAYLDYIKDYVVGIGPWKDTIVPVGKN 300

Query: 296 YSQTPTDLVARAHALDLQIH 315
           Y Q P++LVARAH+ DLQ+H
Sbjct: 301 YLQIPSNLVARAHSHDLQVH 320

Source: Populus tomentosa

Species: Populus tomentosa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118486622|gb|ABK95148.1| unknown [Populus trichocarpa]

 Score =  524 bits (1349), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 254/320 (79%), Positives = 280/320 (87%), Gaps = 7/320 (2%)

Query: 3   ISSTC------FIPLLFLSLIAGCAARPLYPLPSKLDI-HKQPLQTSRPYNLAHRGSNGE 55
           +SSTC      F P+LFLSL+  CAARP+YPLPSK+   ++ PLQTSRPYN+AHRGSNGE
Sbjct: 1   MSSTCSGFGFGFAPILFLSLVVACAARPIYPLPSKVSHGNRLPLQTSRPYNIAHRGSNGE 60

Query: 56  FPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCM 115
            PEET+AAYMRAIEEGADFIETDIL+SKDGVLIC HDV LDDTT+IADHKEFA+RKRT  
Sbjct: 61  IPEETSAAYMRAIEEGADFIETDILSSKDGVLICFHDVTLDDTTDIADHKEFANRKRTYD 120

Query: 116 VQGVNTTGFFVVDFTLEELKTLRAKQRYSFRDQQYNGKFPIITFEEYISIALDAQRVVGI 175
           VQGVNTTGFF VDFTL ELK LR KQR SFRDQQYNG FPIITFEE+ISIALDA RVVGI
Sbjct: 121 VQGVNTTGFFTVDFTLTELKLLRVKQRCSFRDQQYNGMFPIITFEEFISIALDAPRVVGI 180

Query: 176 YPEMKNPVFINQHVKWADGKKFEDKFVDTLKKYGYKGAYMSKEWLKQPIFIQSFAPTSLV 235
           YPE+KNP+ INQHVKW DGKKFEDKFV  LKKYGY+G+YMS+ WLKQP+FIQSFAPTSLV
Sbjct: 181 YPEIKNPILINQHVKWPDGKKFEDKFVGILKKYGYRGSYMSENWLKQPLFIQSFAPTSLV 240

Query: 236 YISNKTDSPKIFLIDDVDILTEDTNQSYSEITSDAYLNYIKEYCVGIGPWKDTVVPVANN 295
           YISN TDSPKIFLIDDV I T+DTNQSY EITSDAYL+YIK+Y VGIGPWKDT+VPV  N
Sbjct: 241 YISNLTDSPKIFLIDDVTIPTQDTNQSYWEITSDAYLDYIKDYVVGIGPWKDTIVPVGKN 300

Query: 296 YSQTPTDLVARAHALDLQIH 315
           Y Q P++LVARAHA DLQ+H
Sbjct: 301 YLQIPSNLVARAHAHDLQVH 320

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225457190|ref|XP_002283945.1| PREDICTED: glycerophosphoryl diester phosphodiesterase [Vitis vinifera] gi|297733861|emb|CBI15108.3| unnamed protein product [Vitis vinifera]

 Score =  518 bits (1333), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 248/314 (78%), Positives = 277/314 (88%), Gaps = 1/314 (0%)

Query: 3   ISSTCFIPLLFLSLIAGCAARPLYPLPSKLDIH-KQPLQTSRPYNLAHRGSNGEFPEETA 61
           + S  F P +FL LI GCAARP YPLPSK+D   + PLQTSRPYN+AHRGSNGE PEETA
Sbjct: 1   MGSFWFGPSVFLLLIVGCAARPFYPLPSKVDARDRLPLQTSRPYNVAHRGSNGELPEETA 60

Query: 62  AAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVNT 121
           AAYMRAIEEGADFIETDILASKDG LIC HDV LDDTT+IA+HKEFADR+ T  VQG+NT
Sbjct: 61  AAYMRAIEEGADFIETDILASKDGALICFHDVTLDDTTDIAEHKEFADRRTTYEVQGLNT 120

Query: 122 TGFFVVDFTLEELKTLRAKQRYSFRDQQYNGKFPIITFEEYISIALDAQRVVGIYPEMKN 181
           TG+F VDFTLEELKTLR  QRY FRDQQYNGKF IITFEE+ISIALDA RVVGIYPE+KN
Sbjct: 121 TGWFSVDFTLEELKTLRVNQRYKFRDQQYNGKFTIITFEEFISIALDAPRVVGIYPEIKN 180

Query: 182 PVFINQHVKWADGKKFEDKFVDTLKKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKT 241
           PVFINQ VKW DGK+FED FV TLKKYGYKG+YMS++WLKQP+FIQSFAPTSL+YISN+T
Sbjct: 181 PVFINQRVKWPDGKRFEDHFVATLKKYGYKGSYMSEDWLKQPVFIQSFAPTSLIYISNQT 240

Query: 242 DSPKIFLIDDVDILTEDTNQSYSEITSDAYLNYIKEYCVGIGPWKDTVVPVANNYSQTPT 301
           + PKIFLIDDV + T+DTNQSY EITSD+YL++IK+Y VGIGPWKDTVVPV +NY QTPT
Sbjct: 241 NLPKIFLIDDVTVPTQDTNQSYWEITSDSYLSFIKQYVVGIGPWKDTVVPVVDNYLQTPT 300

Query: 302 DLVARAHALDLQIH 315
           DLVA+AHA DLQ+H
Sbjct: 301 DLVAKAHAHDLQVH 314

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15241502|ref|NP_196420.1| glycerophosphoryl diester phosphodiesterase [Arabidopsis thaliana] gi|6562317|emb|CAB62615.1| glycerophosphodiester phosphodiesterase-like protein [Arabidopsis thaliana] gi|66792678|gb|AAY56441.1| At5g08030 [Arabidopsis thaliana] gi|332003853|gb|AED91236.1| glycerophosphoryl diester phosphodiesterase [Arabidopsis thaliana]

 Score =  514 bits (1323), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 245/300 (81%), Positives = 272/300 (90%), Gaps = 1/300 (0%)

Query: 17  IAGCAARPLYPLPSKLD-IHKQPLQTSRPYNLAHRGSNGEFPEETAAAYMRAIEEGADFI 75
           +A CA+RPLY LPS+     K+PLQTSRPYNLAHRGSNGE PEETA AYMRAIEEGADFI
Sbjct: 16  VANCASRPLYRLPSEAKHATKKPLQTSRPYNLAHRGSNGELPEETAPAYMRAIEEGADFI 75

Query: 76  ETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVNTTGFFVVDFTLEELK 135
           ETDIL+SKDGVLICHHDV LDDTT++ADHKEFADRKRT  VQG+N TGFF VDFTL+ELK
Sbjct: 76  ETDILSSKDGVLICHHDVNLDDTTDVADHKEFADRKRTYEVQGMNMTGFFTVDFTLKELK 135

Query: 136 TLRAKQRYSFRDQQYNGKFPIITFEEYISIALDAQRVVGIYPEMKNPVFINQHVKWADGK 195
           TL AKQRY FRDQQYNGKFPIITF+EYISIALDA RVVGIYPE+KNPVF+NQ VKWADGK
Sbjct: 136 TLGAKQRYPFRDQQYNGKFPIITFDEYISIALDAPRVVGIYPEIKNPVFMNQQVKWADGK 195

Query: 196 KFEDKFVDTLKKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTDSPKIFLIDDVDIL 255
           KFEDKFV+TLKKYGYKG+Y+S++WLKQPIFIQSFA TSLVYISN TDSPK+FLIDDV IL
Sbjct: 196 KFEDKFVETLKKYGYKGSYLSEDWLKQPIFIQSFAATSLVYISNMTDSPKLFLIDDVTIL 255

Query: 256 TEDTNQSYSEITSDAYLNYIKEYCVGIGPWKDTVVPVANNYSQTPTDLVARAHALDLQIH 315
           TEDTN++Y+EITSDAYL+YIK Y +GIGPWKDT+VPV NN   TPTDLVARAH+ +LQ+H
Sbjct: 256 TEDTNKTYAEITSDAYLDYIKPYVIGIGPWKDTIVPVNNNRLMTPTDLVARAHSRNLQVH 315

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297810905|ref|XP_002873336.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297319173|gb|EFH49595.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  508 bits (1308), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 244/301 (81%), Positives = 273/301 (90%), Gaps = 3/301 (0%)

Query: 17  IAGCAARPLYPLPSKLDIH--KQPLQTSRPYNLAHRGSNGEFPEETAAAYMRAIEEGADF 74
           +A CA+RPLY LPS+ + H  K+ LQTSRPYNLAHRGSNGE PEETA AYMRAIEEGADF
Sbjct: 16  VANCASRPLYRLPSE-EKHATKKSLQTSRPYNLAHRGSNGELPEETAPAYMRAIEEGADF 74

Query: 75  IETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVNTTGFFVVDFTLEEL 134
           IETDIL+SKDGVLICHHDV LD+TT++ADHKEFADRKRT  VQG+N TGFF VDFTL+EL
Sbjct: 75  IETDILSSKDGVLICHHDVNLDNTTDVADHKEFADRKRTYEVQGMNMTGFFTVDFTLKEL 134

Query: 135 KTLRAKQRYSFRDQQYNGKFPIITFEEYISIALDAQRVVGIYPEMKNPVFINQHVKWADG 194
           KTL AKQRY FRDQQYNGKFPIITF+EYISIALDA RVVGIYPE+KNPVFINQ VKWADG
Sbjct: 135 KTLGAKQRYPFRDQQYNGKFPIITFDEYISIALDAPRVVGIYPEIKNPVFINQQVKWADG 194

Query: 195 KKFEDKFVDTLKKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTDSPKIFLIDDVDI 254
           KKFEDKFV+TL+KYGYKG+YMS++WLKQPIFIQSFA TSLVYIS+ TDSPK+FLIDDV I
Sbjct: 195 KKFEDKFVETLEKYGYKGSYMSEDWLKQPIFIQSFAATSLVYISSMTDSPKLFLIDDVTI 254

Query: 255 LTEDTNQSYSEITSDAYLNYIKEYCVGIGPWKDTVVPVANNYSQTPTDLVARAHALDLQI 314
           LTEDTN++Y+EITSDAYL+YIK Y +GIGPWKDT+VPV NN   TPTDLVARAH+ +LQ+
Sbjct: 255 LTEDTNKTYAEITSDAYLDYIKPYVIGIGPWKDTIVPVNNNRLMTPTDLVARAHSRNLQV 314

Query: 315 H 315
           H
Sbjct: 315 H 315

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|157890956|dbj|BAF81519.1| glycerophosphodiester phosphodiesterase [Brassica rapa]

 Score =  506 bits (1302), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 243/300 (81%), Positives = 268/300 (89%), Gaps = 1/300 (0%)

Query: 17  IAGCAARPLYPLPSKLDIH-KQPLQTSRPYNLAHRGSNGEFPEETAAAYMRAIEEGADFI 75
           IA CA+RPLY LPS      K+PLQTSRP+N+AHRG+NGEFPEETA AYMRAIEEGADFI
Sbjct: 16  IAECASRPLYTLPSLAKAGTKKPLQTSRPFNVAHRGANGEFPEETAPAYMRAIEEGADFI 75

Query: 76  ETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVNTTGFFVVDFTLEELK 135
           E+DIL++KDGVLICHHDV LDDTT++ADHKEFADRKRT  VQG+N TGFF VDFTLEELK
Sbjct: 76  ESDILSTKDGVLICHHDVNLDDTTDVADHKEFADRKRTYEVQGMNMTGFFTVDFTLEELK 135

Query: 136 TLRAKQRYSFRDQQYNGKFPIITFEEYISIALDAQRVVGIYPEMKNPVFINQHVKWADGK 195
           TL AKQRY FRDQQYNGKFPIIT +EYI+IALDA RVVGIYPE+KNPVFINQ VKWADGK
Sbjct: 136 TLGAKQRYPFRDQQYNGKFPIITLDEYIAIALDAPRVVGIYPEIKNPVFINQQVKWADGK 195

Query: 196 KFEDKFVDTLKKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTDSPKIFLIDDVDIL 255
           KFEDK V TLKKYGYKG+YMSK+WLKQPIFIQSFA TSLVYISN TDSPK+FLIDDV IL
Sbjct: 196 KFEDKIVATLKKYGYKGSYMSKDWLKQPIFIQSFAATSLVYISNMTDSPKVFLIDDVTIL 255

Query: 256 TEDTNQSYSEITSDAYLNYIKEYCVGIGPWKDTVVPVANNYSQTPTDLVARAHALDLQIH 315
           TEDTN++Y+EITSD YL+YIK Y VGIGPWKDT+VPV NN   TPTDLVARAH+ +LQ+H
Sbjct: 256 TEDTNKTYAEITSDKYLDYIKPYVVGIGPWKDTIVPVDNNRLTTPTDLVARAHSRNLQVH 315

Source: Brassica rapa

Species: Brassica rapa

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359807255|ref|NP_001241112.1| uncharacterized protein LOC100778145 precursor [Glycine max] gi|304421390|gb|ADM32494.1| phytase [Glycine max]

 Score =  496 bits (1277), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 236/313 (75%), Positives = 271/313 (86%), Gaps = 1/313 (0%)

Query: 4   SSTCFIPLLFLSLIAGCAARPLYPLPSKLDI-HKQPLQTSRPYNLAHRGSNGEFPEETAA 62
           S   F P +FL L+ GC ARPLYPLPSK D  +++PLQT RPYN+AHRGSNGE PEET  
Sbjct: 3   SLPSFTPFVFLLLVIGCNARPLYPLPSKGDDGNRKPLQTFRPYNIAHRGSNGELPEETHP 62

Query: 63  AYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVNTT 122
           AY+RAIEEGADFIETDIL+SKDGVL+C HDV LD+TT+IA+  EFA+RKRT  VQG N T
Sbjct: 63  AYLRAIEEGADFIETDILSSKDGVLVCFHDVTLDNTTDIANRTEFANRKRTYEVQGENMT 122

Query: 123 GFFVVDFTLEELKTLRAKQRYSFRDQQYNGKFPIITFEEYISIALDAQRVVGIYPEMKNP 182
           GFF VDFTL+ELK+LR KQR SFRDQQ+NGKF IITFEE+I+IALDA RVVGIYPE+KNP
Sbjct: 123 GFFTVDFTLKELKSLRVKQRCSFRDQQFNGKFQIITFEEFITIALDAPRVVGIYPEIKNP 182

Query: 183 VFINQHVKWADGKKFEDKFVDTLKKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTD 242
           VFINQHVKW+ GK+FEDKFV+TL+KYGYKG+Y+SK+WL+QP+FIQSFAPTSLVYISNKTD
Sbjct: 183 VFINQHVKWSHGKRFEDKFVETLQKYGYKGSYLSKDWLRQPVFIQSFAPTSLVYISNKTD 242

Query: 243 SPKIFLIDDVDILTEDTNQSYSEITSDAYLNYIKEYCVGIGPWKDTVVPVANNYSQTPTD 302
            PK+FLIDDV + T+DTNQSY EITSD YL YIK+Y VGIGPWKDTVVPV  NY   PT+
Sbjct: 243 LPKVFLIDDVTVPTQDTNQSYWEITSDEYLEYIKQYVVGIGPWKDTVVPVVKNYMTNPTN 302

Query: 303 LVARAHALDLQIH 315
           LVARAHA +LQ+H
Sbjct: 303 LVARAHAHNLQVH 315

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|300637793|gb|ADK26134.1| glycerophosphodiester phosphodiesterase 1 [Lupinus albus] gi|300637849|gb|ADK26136.1| glycerophosphodiester phosphodiesterase 1 [Lupinus albus]

 Score =  495 bits (1274), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 235/313 (75%), Positives = 269/313 (85%), Gaps = 1/313 (0%)

Query: 4   SSTCFIPLLFLSLIAGCAARPLYPLPSKLDI-HKQPLQTSRPYNLAHRGSNGEFPEETAA 62
           SST F  L+F+ LI GC A P+YP+   +    ++PLQT RPYN+AHRGSNGE PEETA 
Sbjct: 7   SSTSFASLVFMLLIIGCTAIPVYPIHRHVQHGSRKPLQTFRPYNIAHRGSNGELPEETAP 66

Query: 63  AYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVNTT 122
           AY+RAIEEGADFIETDIL+SKDGVLIC HDV LDDTT++A+H+EFA+RKRT  VQG N T
Sbjct: 67  AYLRAIEEGADFIETDILSSKDGVLICFHDVTLDDTTDVANHQEFANRKRTYEVQGENVT 126

Query: 123 GFFVVDFTLEELKTLRAKQRYSFRDQQYNGKFPIITFEEYISIALDAQRVVGIYPEMKNP 182
           GFF VDFTL+ELK+LR KQRY+FRDQQYNGKF IITFEEYISIAL+A RVVGIYPE+KNP
Sbjct: 127 GFFTVDFTLKELKSLRVKQRYNFRDQQYNGKFQIITFEEYISIALEAPRVVGIYPEIKNP 186

Query: 183 VFINQHVKWADGKKFEDKFVDTLKKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTD 242
           + INQHVKWADGK FEDKFV+TLKKYGYKG+Y+SK+WLKQP FIQSFAPTSLVY SN+TD
Sbjct: 187 ILINQHVKWADGKLFEDKFVETLKKYGYKGSYLSKDWLKQPAFIQSFAPTSLVYTSNQTD 246

Query: 243 SPKIFLIDDVDILTEDTNQSYSEITSDAYLNYIKEYCVGIGPWKDTVVPVANNYSQTPTD 302
            PKI LIDD+ I T+DTNQSY EITSD+Y  YIK+Y VGIGPWK+TVV V NNY QTP+D
Sbjct: 247 LPKILLIDDITIPTQDTNQSYWEITSDSYFEYIKDYVVGIGPWKETVVTVVNNYLQTPSD 306

Query: 303 LVARAHALDLQIH 315
           LV RAHA +LQ+H
Sbjct: 307 LVKRAHAHNLQVH 319

Source: Lupinus albus

Species: Lupinus albus

Genus: Lupinus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	322
TAIR|locus:2142823	372	GDPD6 "glycerophosphodiester p	0.950	0.822	0.812	3.7e-135
TAIR|locus:2019642	392	GDPD5 "glycerophosphodiester p	0.968	0.795	0.726	1.2e-122
UNIPROTKB|P09394	358	glpQ "GlpQ" [Escherichia coli	0.670	0.603	0.317	5.3e-24
UNIPROTKB|Q9KN30	371	VC_A0136 "Glycerophosphoryl di	0.788	0.684	0.288	2.1e-20
TIGR_CMR|VC_A0136	371	VC_A0136 "glycerophosphoryl di	0.788	0.684	0.288	2.1e-20
TIGR_CMR|BA_3560	314	BA_3560 "glycerophosphoryl die	0.170	0.175	0.490	1.8e-11
TAIR|locus:2173977	766	SVL1 "SHV3-like 1" [Arabidopsi	0.757	0.318	0.227	3.4e-11
TAIR|locus:2161248	750	SVL5 "SHV3-like 5" [Arabidopsi	0.413	0.177	0.285	1.8e-07
TAIR|locus:2085710	729	SVL3 "SHV3-like 3" [Arabidopsi	0.596	0.263	0.247	2.2e-08
TIGR_CMR|BA_2668	287	BA_2668 "glycerophosphoryl die	0.189	0.212	0.409	3.2e-08

TAIR|locus:2142823 GDPD6 "glycerophosphodiester phosphodiesterase 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 1324 (471.1 bits), Expect = 3.7e-135, P = 3.7e-135
 Identities = 252/310 (81%), Positives = 280/310 (90%)

Query:     9 IPLLFLSL-IAGCAARPLYPLPSKLDIH--KQPLQTSRPYNLAHRGSNGEFPEETAAAYM 65
             +PLL LSL +A CA+RPLY LPS+   H  K+PLQTSRPYNLAHRGSNGE PEETA AYM
Sbjct:     7 LPLLLLSLLVANCASRPLYRLPSEAK-HATKKPLQTSRPYNLAHRGSNGELPEETAPAYM 65

Query:    66 RAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVNTTGFF 125
             RAIEEGADFIETDIL+SKDGVLICHHDV LDDTT++ADHKEFADRKRT  VQG+N TGFF
Sbjct:    66 RAIEEGADFIETDILSSKDGVLICHHDVNLDDTTDVADHKEFADRKRTYEVQGMNMTGFF 125

Query:   126 VVDFTLEELKTLRAKQRYSFRDQQYNGKFPIITFEEYISIALDAQRVVGIYPEMKNPVFI 185
              VDFTL+ELKTL AKQRY FRDQQYNGKFPIITF+EYISIALDA RVVGIYPE+KNPVF+
Sbjct:   126 TVDFTLKELKTLGAKQRYPFRDQQYNGKFPIITFDEYISIALDAPRVVGIYPEIKNPVFM 185

Query:   186 NQHVKWADGKKFEDKFVDTLKKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTDSPK 245
             NQ VKWADGKKFEDKFV+TLKKYGYKG+Y+S++WLKQPIFIQSFA TSLVYISN TDSPK
Sbjct:   186 NQQVKWADGKKFEDKFVETLKKYGYKGSYLSEDWLKQPIFIQSFAATSLVYISNMTDSPK 245

Query:   246 IFLIDDVDILTEDTNQSYSEITSDAYLNYIKEYCVGIGPWKDTVVPVANNYSQTPTDLVA 305
             +FLIDDV ILTEDTN++Y+EITSDAYL+YIK Y +GIGPWKDT+VPV NN   TPTDLVA
Sbjct:   246 LFLIDDVTILTEDTNKTYAEITSDAYLDYIKPYVIGIGPWKDTIVPVNNNRLMTPTDLVA 305

Query:   306 RAHALDLQIH 315
             RAH+ +LQ+H
Sbjct:   306 RAHSRNLQVH 315

GO:0005886 "plasma membrane" evidence=ISM

GO:0006071 "glycerol metabolic process" evidence=IEA;ISS

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0008081 "phosphoric diester hydrolase activity" evidence=IEA

GO:0008889 "glycerophosphodiester phosphodiesterase activity" evidence=IEA;ISS

TAIR|locus:2019642 GDPD5 "glycerophosphodiester phosphodiesterase 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 1206 (429.6 bits), Expect = 1.2e-122, P = 1.2e-122
 Identities = 229/315 (72%), Positives = 264/315 (83%)

Query:     3 ISSTCFIPLLFLSLIAGCAA-RPLYPLPSK-LDIHKQPLQTSRPYNLAHRGSNGEFPEET 60
             I + C +PL++LSL+  CAA R L+PLP K     K  LQTSRPYN+AHRGSNGE PEET
Sbjct:     2 ILTRC-LPLIWLSLLTVCAAGRTLHPLPVKGPKTVKLQLQTSRPYNIAHRGSNGEIPEET 60

Query:    61 AAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVN 120
              AAY++AIEEG DFIETDIL+SKDGVLIC HD  LD+TTN+A HKEFADRKRT  VQG N
Sbjct:    61 TAAYLKAIEEGTDFIETDILSSKDGVLICFHDCILDETTNVASHKEFADRKRTYDVQGFN 120

Query:   121 TTGFFVVDFTLEELKTLRAKQRYSFRDQQYNGKFPIITFEEYISIALDAQRVVGIYPEMK 180
              TGFF  DFTL+ELK LR KQRY+FRDQQYNG +PIITFEE+++IA DA RVVGIYPE+K
Sbjct:   121 ITGFFTFDFTLKELKQLRIKQRYAFRDQQYNGMYPIITFEEFLTIARDAPRVVGIYPEIK 180

Query:   181 NPVFINQHVKWADGKKFEDKFVDTLKKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNK 240
             NPV +NQHVKW  GKKFEDK V+TLKKYGY G+Y+SK+WLK+P+FIQSFAPTSLVYISN 
Sbjct:   181 NPVLMNQHVKWPGGKKFEDKVVETLKKYGYGGSYLSKKWLKKPLFIQSFAPTSLVYISNL 240

Query:   241 TDSPKIFLIDDVDILTEDTNQSYSEITSDAYLNYIKEYCVGIGPWKDTVVPVANNYSQTP 300
             TDSPK+ LIDDV + T+DTNQ+Y+EITSDAY  YIK+Y VGIGPWKDT+VPV NNY   P
Sbjct:   241 TDSPKVLLIDDVTMPTQDTNQTYAEITSDAYFEYIKQYVVGIGPWKDTIVPVNNNYVLAP 300

Query:   301 TDLVARAHALDLQIH 315
             TDLV RAHA +LQ+H
Sbjct:   301 TDLVKRAHAHNLQVH 315

GO:0005886 "plasma membrane" evidence=ISM

GO:0006071 "glycerol metabolic process" evidence=IEA;ISS

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0008081 "phosphoric diester hydrolase activity" evidence=IEA

GO:0008889 "glycerophosphodiester phosphodiesterase activity" evidence=IEA;ISS

GO:0005773 "vacuole" evidence=IDA

UNIPROTKB|P09394 glpQ "GlpQ" [Escherichia coli K-12 (taxid:83333)]

 Score = 275 (101.9 bits), Expect = 5.3e-24, P = 5.3e-24
 Identities = 85/268 (31%), Positives = 136/268 (50%)

Query:    47 LAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKE 106
             +AHRG++G  PE T  A   A  +GAD++E D++ +KD  L+  HD +LD  T++AD   
Sbjct:    34 IAHRGASGYLPEHTLPAKAMAYAQGADYLEQDLVMTKDDNLVVLHDHYLDRVTDVADR-- 91

Query:   107 FADRKRTCMVQGVNTTGFFVVDFTLEELKTLRAKQRYSFRD----QQYNGKFP------- 155
             F DR R     G     ++ +DFTL+E+K+L+  + +   +    Q Y G+FP       
Sbjct:    92 FPDRARK---DG----RYYAIDFTLDEIKSLKFTEGFDIENGKKVQTYPGRFPMGKSDFR 144

Query:   156 IITFEEYISIALDAQ----RVVGIYPEMKNPVFINQHVKWADGKKFEDKFVDTLKKYGYK 211
             + TFEE I           + +GIYPE+K P F +Q     +GK    K ++ LKKYGY 
Sbjct:   145 VHTFEEEIEFVQGLNHSTGKNIGIYPEIKAPWFHHQ-----EGKDIAAKTLEVLKKYGYT 199

Query:   212 GAYMSKEWLKQPIFIQSFAPTSLVYISNKTDSPKIFL-IDDVDILT-EDTNQSYSEITSD 269
             G    K+     +++Q F    L  I N+ + PK+ + ++ V ++   D N++  +    
Sbjct:   200 G----KD---DKVYLQCFDADELKRIKNELE-PKMGMELNLVQLIAYTDWNETQQKQPDG 251

Query:   270 AYLNY-------------IKEYCVGIGP 284
             +++NY             + EY  GIGP
Sbjct:   252 SWVNYNYDWMFKPGAMKQVAEYADGIGP 279

GO:0008081 "phosphoric diester hydrolase activity" evidence=IEA

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0042597 "periplasmic space" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0008889 "glycerophosphodiester phosphodiesterase activity" evidence=IEA

GO:0006071 "glycerol metabolic process" evidence=IEA

UNIPROTKB|Q9KN30 VC_A0136 "Glycerophosphoryl diester phosphodiesterase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 242 (90.2 bits), Expect = 2.1e-20, P = 2.1e-20
 Identities = 88/305 (28%), Positives = 139/305 (45%)

Query:    41 TSRPYNLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTN 100
             ++ P  +AHRG++G  PE T  A   A     D+IE D++ +KD  L+  HD +LD  T+
Sbjct:    40 SAEPLVIAHRGASGYLPEHTLEAKTLAYAMKPDYIEQDVVMTKDDQLVVLHDHYLDRVTD 99

Query:   101 IADHKEFADRKRTCMVQGVNTTGFFVVDFTLEELKTLRAKQRYS----------FRDQ-- 148
             +A+   F +R R     G     ++ +DFTL E+KTLR  + +           F D+  
Sbjct:   100 VAER--FPNRARA---DG----RYYAIDFTLAEIKTLRVTEGFDIDAQGNEVAGFPDRFP 150

Query:   149 QYNGKFPIITFEEYISIALDAQRV----VGIYPEMKNPVFINQHVKWADGKKFEDKFVDT 204
              + G F + T  E I +     +     +GIYPE+K P F ++H    +GK      +  
Sbjct:   151 LWKGDFTVPTLAEEIELIQGLNKTLGYNIGIYPEIKAPWF-HRH----EGKDISQAVLKV 205

Query:   205 LKKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISN------KTDSPKIFLIDDVD----- 253
             LK+YGY     SK+     I++Q F P  L  I +      K D   + L+   D     
Sbjct:   206 LKQYGYD----SKD---DKIYLQCFDPIELKRIHDELLPAMKMDLNLVQLLAYTDWNETM 258

Query:   254 ILTED--TNQSYSEITSDAYLNYIKEYCVGIGPWKDTVVPVANNYSQTPTD-LVARAHAL 310
             +   D  T   Y  + ++  +  + +Y  GIGPWK  +V  A+         L+ +A   
Sbjct:   259 VYQGDQATPYDYDWMFAEGGMAKVAQYADGIGPWKPMLVDDASTKDNIMIKPLMKQAKEA 318

Query:   311 DLQIH 315
              L +H
Sbjct:   319 GLVVH 323

GO:0008889 "glycerophosphodiester phosphodiesterase activity" evidence=ISS

GO:0009395 "phospholipid catabolic process" evidence=ISS

TIGR_CMR|VC_A0136 VC_A0136 "glycerophosphoryl diester phosphodiesterase" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 242 (90.2 bits), Expect = 2.1e-20, P = 2.1e-20
 Identities = 88/305 (28%), Positives = 139/305 (45%)

Query:    41 TSRPYNLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTN 100
             ++ P  +AHRG++G  PE T  A   A     D+IE D++ +KD  L+  HD +LD  T+
Sbjct:    40 SAEPLVIAHRGASGYLPEHTLEAKTLAYAMKPDYIEQDVVMTKDDQLVVLHDHYLDRVTD 99

Query:   101 IADHKEFADRKRTCMVQGVNTTGFFVVDFTLEELKTLRAKQRYS----------FRDQ-- 148
             +A+   F +R R     G     ++ +DFTL E+KTLR  + +           F D+  
Sbjct:   100 VAER--FPNRARA---DG----RYYAIDFTLAEIKTLRVTEGFDIDAQGNEVAGFPDRFP 150

Query:   149 QYNGKFPIITFEEYISIALDAQRV----VGIYPEMKNPVFINQHVKWADGKKFEDKFVDT 204
              + G F + T  E I +     +     +GIYPE+K P F ++H    +GK      +  
Sbjct:   151 LWKGDFTVPTLAEEIELIQGLNKTLGYNIGIYPEIKAPWF-HRH----EGKDISQAVLKV 205

Query:   205 LKKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISN------KTDSPKIFLIDDVD----- 253
             LK+YGY     SK+     I++Q F P  L  I +      K D   + L+   D     
Sbjct:   206 LKQYGYD----SKD---DKIYLQCFDPIELKRIHDELLPAMKMDLNLVQLLAYTDWNETM 258

Query:   254 ILTED--TNQSYSEITSDAYLNYIKEYCVGIGPWKDTVVPVANNYSQTPTD-LVARAHAL 310
             +   D  T   Y  + ++  +  + +Y  GIGPWK  +V  A+         L+ +A   
Sbjct:   259 VYQGDQATPYDYDWMFAEGGMAKVAQYADGIGPWKPMLVDDASTKDNIMIKPLMKQAKEA 318

Query:   311 DLQIH 315
              L +H
Sbjct:   319 GLVVH 323

GO:0008889 "glycerophosphodiester phosphodiesterase activity" evidence=ISS

GO:0009395 "phospholipid catabolic process" evidence=ISS

TIGR_CMR|BA_3560 BA_3560 "glycerophosphoryl diester phosphodiesterase, putative" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 134 (52.2 bits), Expect = 1.8e-11, Sum P(2) = 1.8e-11
 Identities = 27/55 (49%), Positives = 36/55 (65%)

Query:    46 NLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTN 100
             N+AHRG++G  PE T A+Y    +  AD++E DI  +KDG LI  HD  +D TTN
Sbjct:    40 NIAHRGASGHAPEHTFASYDLVKKMKADYLELDIQLTKDGQLIAMHDTAVDRTTN 94

GO:0008889 "glycerophosphodiester phosphodiesterase activity" evidence=ISS

GO:0009395 "phospholipid catabolic process" evidence=ISS

TAIR|locus:2173977 SVL1 "SHV3-like 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 183 (69.5 bits), Expect = 3.4e-11, P = 3.4e-11
 Identities = 64/281 (22%), Positives = 132/281 (46%)

Query:    47 LAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKE 106
             ++  G++G++P  T  AY +AI++GAD I+  +  S DG+  C   + L ++TN+     
Sbjct:   368 ISKNGASGDYPGCTDLAYTKAIKDGADVIDCSLQMSSDGIPFCLSSINLGESTNVVQ-SP 426

Query:   107 FADRKRTCMVQGVNTTGFFVVDFTLEELKTLRA--KQRYS-----FRD--QQYNGKFPII 157
             F +R  T    G +  G +       E++TLR   +  YS     FR+  ++ +GKF  +
Sbjct:   427 FRNRSTTVPEIG-SLPGIYSFSLAWSEIQTLRPAIENPYSREFTMFRNPRERSSGKF--V 483

Query:   158 TFEEYISIALDAQRVVGIYPEMKNPVFINQHVKWADGKKFEDKFVDTLKKYGYKGAYMSK 217
             +  +++++A ++  + G+   ++N  ++ +  +  D  K     +DTL + GY     S 
Sbjct:   484 SLSDFLNLAKNSSSLTGVLISVENATYLREK-QGLDAVK---AVLDTLTEAGY-----SN 534

Query:   218 EWLKQPIFIQSFAPTSLVYISNKTDSPKIFLIDDV--DILTEDTNQSYSEITSDAYLNYI 275
             +     + IQS   + L+    ++    ++ +++   DIL             D  +  I
Sbjct:   535 KTTTTRVMIQSTNSSVLIDFKKQSRYETVYKVEETIRDIL-------------DTAIEDI 581

Query:   276 KEYCVGIGPWKDTVVPVANNYSQTPTDLVARAHALDLQIHI 316
             K++   +   K +V P + +++   T LV R     L +++
Sbjct:   582 KKFADAVVISKKSVFPTSESFTTGQTKLVERLQKFQLPVYV 622

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006071 "glycerol metabolic process" evidence=IEA;ISS

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0008081 "phosphoric diester hydrolase activity" evidence=IEA

GO:0008889 "glycerophosphodiester phosphodiesterase activity" evidence=IEA;ISS

GO:0031225 "anchored to membrane" evidence=TAS

GO:0046658 "anchored to plasma membrane" evidence=IDA

GO:0010026 "trichome differentiation" evidence=IGI

GO:0010442 "guard cell morphogenesis" evidence=IGI

GO:0052541 "plant-type cell wall cellulose metabolic process" evidence=IGI;RCA

GO:0009506 "plasmodesma" evidence=IDA

GO:0000272 "polysaccharide catabolic process" evidence=RCA

GO:0005982 "starch metabolic process" evidence=RCA

GO:0007155 "cell adhesion" evidence=RCA

GO:0009653 "anatomical structure morphogenesis" evidence=RCA

GO:0009664 "plant-type cell wall organization" evidence=RCA

GO:0009832 "plant-type cell wall biogenesis" evidence=RCA

GO:0010054 "trichoblast differentiation" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0010090 "trichome morphogenesis" evidence=RCA

GO:0042545 "cell wall modification" evidence=RCA

GO:0045010 "actin nucleation" evidence=RCA

GO:0048364 "root development" evidence=RCA

GO:0048765 "root hair cell differentiation" evidence=RCA

GO:0048869 "cellular developmental process" evidence=RCA

GO:0052546 "cell wall pectin metabolic process" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

TAIR|locus:2161248 SVL5 "SHV3-like 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 145 (56.1 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
 Identities = 42/147 (28%), Positives = 73/147 (49%)

Query:    47 LAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKE 106
             + H G++G++P  T  AY +A+++GAD I+  +  SKDG+  CH D   D T +      
Sbjct:   358 ITHNGASGDYPGCTDLAYQKAVDDGADVIDCSVQMSKDGIAFCH-DA-ADLTASTTAMTI 415

Query:   107 FADRKRTCMVQGVNTTGFFVVDFTLEELKTLRAKQRYSFRDQ--QYN------GKFPIIT 158
             F  R  T + +   T G F  D T  E+++++ +    F     Q N      GKF  IT
Sbjct:   416 FMSRA-TSVPEIQPTNGIFSFDLTWAEIQSVKPQIENPFTATGFQRNPANKNAGKF--IT 472

Query:   159 FEEYISIALDAQRVVGIYPEMKNPVFI 185
               +++  +  A+ V G+   ++N  ++
Sbjct:   473 LADFLDFS-KAKAVTGVMINIENAAYL 498

GO:0005886 "plasma membrane" evidence=ISM

GO:0006071 "glycerol metabolic process" evidence=IEA;ISS

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0008081 "phosphoric diester hydrolase activity" evidence=IEA

GO:0008889 "glycerophosphodiester phosphodiesterase activity" evidence=IEA;ISS

GO:0031225 "anchored to membrane" evidence=TAS

GO:0048046 "apoplast" evidence=IDA

GO:0009860 "pollen tube growth" evidence=RCA

GO:0030048 "actin filament-based movement" evidence=RCA

TAIR|locus:2085710 SVL3 "SHV3-like 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 158 (60.7 bits), Expect = 2.2e-08, P = 2.2e-08
 Identities = 54/218 (24%), Positives = 104/218 (47%)

Query:    47 LAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKE 106
             ++  G++G+FP  T  AY RA  +GAD ++ ++  SKD +  C     L ++TN+    E
Sbjct:   340 ISKNGASGDFPGCTDLAYQRAASDGADILDCNVQMSKDKIPFCMSSFDLINSTNVI---E 396

Query:   107 FADRKRTCMVQGVNT--TGFFVVDFTLEELKTLRA------KQRYSFRDQQYN--GKFPI 156
              + R  + +V  +N   +G +    T+ +++TL+       K    FR+ + N  GKF  
Sbjct:   397 TSFRNLSSVVSEINPRRSGIYTFSLTMSQIQTLKPTISNLEKDSGLFRNPRNNKAGKF-- 454

Query:   157 ITFEEYISIALDAQRVVGIYPEMKNPVFINQHVKWADGKKFEDKFVDTLKKYGYKGAYMS 216
             +T  E++ +      ++G+  E++N  ++ +H     G    D  +D LK+         
Sbjct:   455 LTLSEFLFLPNRYSSLLGLLIEVENAAYLVEH----QGISVVDAVLDELKR----ATTQQ 506

Query:   217 KEWLKQPIFIQSFAPTSLVYIS--NKTDSPK-IFLIDD 251
              +   + I IQS   + L+     NK +  + ++ +DD
Sbjct:   507 NKTSARTILIQSTDKSVLMKFKEKNKMNHDELVYRVDD 544

GO:0005886 "plasma membrane" evidence=ISM

GO:0006071 "glycerol metabolic process" evidence=IEA;ISS

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0008081 "phosphoric diester hydrolase activity" evidence=IEA

GO:0008889 "glycerophosphodiester phosphodiesterase activity" evidence=IEA;ISS

GO:0031225 "anchored to membrane" evidence=TAS

TIGR_CMR|BA_2668 BA_2668 "glycerophosphoryl diester phosphodiesterase, putative" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 121 (47.7 bits), Expect = 3.2e-08, Sum P(3) = 3.2e-08
 Identities = 25/61 (40%), Positives = 37/61 (60%)

Query:    40 QTSRPYNLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTT 99
             Q++   N+AHRG++   PE T AAY    +   D+IE D+  +KDG L+  HD  ++ TT
Sbjct:    35 QSNHIKNIAHRGASAYAPEHTIAAYKLGQQLKGDYIEIDLQMTKDGHLVAMHDETVNRTT 94

Query:   100 N 100
             N
Sbjct:    95 N 95

GO:0008889 "glycerophosphodiester phosphodiesterase activity" evidence=ISS

GO:0009395 "phospholipid catabolic process" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	eugene3.00820009	SubName- Full=Putative uncharacterized protein; (399 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.III.525.1	SubName- Full=Putative uncharacterized protein; (343 aa)						•			0.899
	gw1.I.6971.1	choline kinase (EC-2.7.1.32) (345 aa)						•			0.899
	grail3.0084003101	hypothetical protein (258 aa)						•			0.899
	grail3.0028024201	phosphotransferase, alcohol group as acceptor/kinase (EC-2.7.1.82) (386 aa)						•			0.899
	fgenesh4_pm.C_LG_XVIII000124	hypothetical protein (257 aa)						•			0.899
	fgenesh4_pm.C_LG_XI000039	hypothetical protein (264 aa)						•			0.899
	fgenesh4_pg.C_LG_II000596	choline kinase (EC-2.7.1.32) (360 aa)						•			0.899
	eugene3.00140065	SubName- Full=Putative uncharacterized protein; (433 aa)						•			0.899
	gw1.XIII.3117.1	hypothetical protein (298 aa)			•				•		0.569
	eugene3.72860001	Predicted protein (75 aa)	•								0.488

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	322
cd08602	309	cd08602, GDPD_ScGlpQ1_like, Glycerophosphodiester	1e-144
cd08559	296	cd08559, GDPD_periplasmic_GlpQ_like, Periplasmic g	1e-114
cd08600	318	cd08600, GDPD_EcGlpQ_like, Glycerophosphodiester p	2e-44
PRK11143	355	PRK11143, glpQ, glycerophosphodiester phosphodiest	4e-41
cd08571	302	cd08571, GDPD_SHV3_plant, Glycerophosphodiester ph	1e-39
pfam03009	238	pfam03009, GDPD, Glycerophosphoryl diester phospho	4e-36
cd08601	256	cd08601, GDPD_SaGlpQ_like, Glycerophosphodiester p	3e-35
COG0584	257	COG0584, UgpQ, Glycerophosphoryl diester phosphodi	9e-28
cd08603	299	cd08603, GDPD_SHV3_repeat_1, Glycerophosphodiester	2e-27
cd08582	233	cd08582, GDPD_like_2, Glycerophosphodiester phosph	3e-24
cd08604	300	cd08604, GDPD_SHV3_repeat_2, Glycerophosphodiester	4e-21
cd08563	230	cd08563, GDPD_TtGDE_like, Glycerophosphodiester ph	6e-21
cd08561	249	cd08561, GDPD_cytoplasmic_ScUgpQ2_like, Glyceropho	1e-19
cd08566	240	cd08566, GDPD_AtGDE_like, Glycerophosphodiester ph	3e-18
cd08556	189	cd08556, GDPD, Glycerophosphodiester phosphodieste	4e-16
cd08575	264	cd08575, GDPD_GDE4_like, Glycerophosphodiester pho	5e-16
cd08579	220	cd08579, GDPD_memb_like, Glycerophosphodiester pho	5e-15
cd08560	356	cd08560, GDPD_EcGlpQ_like_1, Glycerophosphodiester	7e-15
cd08570	234	cd08570, GDPD_YPL206cp_fungi, Glycerophosphodieste	1e-14
cd08567	263	cd08567, GDPD_SpGDE_like, Glycerophosphodiester ph	1e-14
cd08573	258	cd08573, GDPD_GDE1, Glycerophosphodiester phosphod	6e-14
cd08581	229	cd08581, GDPD_like_1, Glycerophosphodiester phosph	3e-13
cd08562	229	cd08562, GDPD_EcUgpQ_like, Glycerophosphodiester p	9e-13
cd08565	235	cd08565, GDPD_pAtGDE_like, Glycerophosphodiester p	1e-12
cd08568	226	cd08568, GDPD_TmGDE_like, Glycerophosphodiester ph	2e-10
cd08612	300	cd08612, GDPD_GDE4, Glycerophosphodiester phosphod	1e-09
cd08574	252	cd08574, GDPD_GDE_2_3_6, Glycerophosphodiester pho	3e-09
cd08585	237	cd08585, GDPD_like_3, Glycerophosphodiester phosph	6e-09
cd08609	315	cd08609, GDPD_GDE3, Glycerophosphodiester phosphod	1e-08
cd08555	179	cd08555, PI-PLCc_GDPD_SF, Catalytic domain of phos	2e-08
cd08610	316	cd08610, GDPD_GDE6, Glycerophosphodiester phosphod	7e-08
cd08580	263	cd08580, GDPD_Rv2277c_like, Glycerophosphodiester	8e-08
cd08564	265	cd08564, GDPD_GsGDE_like, Glycerophosphodiester ph	3e-06
cd08607	290	cd08607, GDPD_GDE5, Glycerophosphodiester phosphod	7e-06
cd08608	351	cd08608, GDPD_GDE2, Glycerophosphodiester phosphod	3e-05
cd08572	293	cd08572, GDPD_GDE5_like, Glycerophosphodiester pho	6e-05
PRK09454	249	PRK09454, ugpQ, cytoplasmic glycerophosphodiester	7e-05
cd08613	309	cd08613, GDPD_GDE4_like_1, Glycerophosphodiester p	7e-05
cd08556	189	cd08556, GDPD, Glycerophosphodiester phosphodieste	0.002

>gnl|CDD|176544 cd08602, GDPD_ScGlpQ1_like, Glycerophosphodiester phosphodiesterase domain of Streptomycin coelicolor (GlpQ1) and similar proteins

 Score =  409 bits (1054), Expect = e-144
 Identities = 151/281 (53%), Positives = 189/281 (67%), Gaps = 20/281 (7%)

Query: 44  PYNLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIAD 103
           P  +AHRG++G  PE T AAY  AIE+GADFIE D++++KDGVLIC H+  L  TT++AD
Sbjct: 1   PLVIAHRGASGYRPEHTLAAYQLAIEQGADFIEPDLVSTKDGVLICRHEPELSGTTDVAD 60

Query: 104 HKEFADRKRTCMVQGVNTTGFFVVDFTLEELKTLRAKQRYSFRDQQYNGKFPIITFEEYI 163
           H EFADRK T  V GVN TG+F  DFTL ELKTLRA+QR  +RDQ Y+G+FPI TFEE I
Sbjct: 61  HPEFADRKTTKTVDGVNVTGWFTEDFTLAELKTLRARQRLPYRDQSYDGQFPIPTFEEII 120

Query: 164 SIALDAQ----RVVGIYPEMKNPVFINQHVKWADGKKFEDKFVDTLKKYGYKGAYMSKEW 219
           ++A  A     R VGIYPE+K+P + N       G   EDK ++TLKKYGY G       
Sbjct: 121 ALAKAASAATGRTVGIYPEIKHPTYFNA----PLGLPMEDKLLETLKKYGYTGK------ 170

Query: 220 LKQPIFIQSFAPTSLVYISNKTDSPKIFLIDDVDILTEDT----NQSYSEITSDAYLNYI 275
            K P+FIQSF  T+L Y+ NKTD P + LIDD  I  +DT    +++Y+++T+DA L  I
Sbjct: 171 -KAPVFIQSFEVTNLKYLRNKTDLPLVQLIDDATIPPQDTPEGDSRTYADLTTDAGLKEI 229

Query: 276 KEYCVGIGPWKDTVVPV-ANNYSQTPTDLVARAHALDLQIH 315
             Y  GIGPWKD ++P  AN    TPTDLV  AHA  LQ+H
Sbjct: 230 ATYADGIGPWKDLIIPSDANGRLGTPTDLVEDAHAAGLQVH 270

This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of putative bacterial and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) similar to Escherichia coli periplasmic phosphodiesterase GlpQ, as well as plant glycerophosphodiester phosphodiesterases (GP-PDEs), all of which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. The prototypes of this family include putative secreted phosphodiesterase encoded by gene glpQ1 (SCO1565) from the pho regulon in Streptomyces coelicolor genome, and in plants, two distinct Arabidopsis thaliana genes, AT5G08030 and AT1G74210, coding putative GP-PDEs from the cell walls and vacuoles, respectively. Length = 309

>gnl|CDD|176502 cd08559, GDPD_periplasmic_GlpQ_like, Periplasmic glycerophosphodiester phosphodiesterase domain (GlpQ) and similar proteins

 Score =  332 bits (853), Expect = e-114
 Identities = 128/281 (45%), Positives = 159/281 (56%), Gaps = 30/281 (10%)

Query: 44  PYNLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIAD 103
           P  +AHRG++G  PE T AAY  AIE GAD+IE D++ +KDGVL+  HD  LD TTN+A+
Sbjct: 1   PLVIAHRGASGYAPEHTLAAYALAIEMGADYIEQDLVMTKDGVLVARHDPTLDRTTNVAE 60

Query: 104 HKEFADRKRTCMVQGVNTTGFFVVDFTLEELKTLRAK----QRYSFRDQQYNGKFPIITF 159
           H  F          G   TG+FV+DFTL ELKTLRA     QRY  R   Y G F I T 
Sbjct: 61  HFPFR---------GRKDTGYFVIDFTLAELKTLRAGSWFNQRYPERAPSYYGGFKIPTL 111

Query: 160 EEYISIALDAQ----RVVGIYPEMKNPVFINQHVKWADGKKFEDKFVDTLKKYGYKGAYM 215
           EE I +A        R VGIYPE K+P F  Q     +G   E+K ++ LKKYGY G   
Sbjct: 112 EEVIELAQGLNKSTGRNVGIYPETKHPTFHKQ-----EGPDIEEKLLEVLKKYGYTGK-- 164

Query: 216 SKEWLKQPIFIQSFAPTSLVYISNKT-DSPKIFLIDDVDILTEDTNQSYSEITSDAYLNY 274
                  P+FIQSF P SL  + N+T D P + LID  D    D   +Y+ +T+DA L  
Sbjct: 165 -----NDPVFIQSFEPESLKRLRNETPDIPLVQLIDYGDWAETDKKYTYAWLTTDAGLKE 219

Query: 275 IKEYCVGIGPWKDTVVPVANNYSQTPTDLVARAHALDLQIH 315
           I +Y  GIGPWK  ++P  +N    PTDLV  AH   L +H
Sbjct: 220 IAKYADGIGPWKSLIIPEDSNGLLVPTDLVKDAHKAGLLVH 260

This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in bacterial and eukaryotic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46) similar to Escherichia coli periplasmic phosphodiesterase GlpQ. GP-GDEs are involved in glycerol metabolism and catalyze the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. In E. coli, there are two major G3P uptake systems: Glp and Ugp, which contain genes coding for two different GP-GDEs. GlpQ gene from the glp operon codes for a periplasmic phosphodiesterase GlpQ. GlpQ is a dimeric enzyme that hydrolyzes periplasmic glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG), glycerophosphoinositol (GPI), and glycerophosphoserine (GPS), to the corresponding alcohols and G3P, which is subsequently transported into the cell through the GlpT transport system. Ca2+ is required for GlpQ enzymatic activity. This subfamily also includes some GP-GDEs in higher plants and their eukaryotic homologs, which show very high sequence similarities with bacterial periplasmic GP-GDEs. Length = 296

>gnl|CDD|176542 cd08600, GDPD_EcGlpQ_like, Glycerophosphodiester phosphodiesterase domain of Escherichia coli (GlpQ) and similar proteins

 Score =  153 bits (389), Expect = 2e-44
 Identities = 97/300 (32%), Positives = 146/300 (48%), Gaps = 54/300 (18%)

Query: 47  LAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKE 106
           +AHRG++G  PE T  A   A  +GAD++E D++ +KD  L+  HD +LD+ TN+A  ++
Sbjct: 4   IAHRGASGYLPEHTLEAKALAYAQGADYLEQDVVLTKDDKLVVIHDHYLDNVTNVA--EK 61

Query: 107 FADRKRTCMVQGVNTTGFFVVDFTLEELKTLRAKQRY----SFRDQQYNGKFP------- 155
           F DRKR           ++V+DFTL+ELK+L   +R+      + Q Y  +FP       
Sbjct: 62  FPDRKR-------KDGRYYVIDFTLDELKSLSVTERFDIENGKKVQVYPNRFPLWKSDFK 114

Query: 156 IITFEEYISIALDAQRV----VGIYPEMKNPVFINQHVKWADGKKFEDKFVDTLKKYGYK 211
           I T EE I +     +     VGIYPE+K P F +Q     +GK      ++ LKKYGY 
Sbjct: 115 IHTLEEEIELIQGLNKSTGKNVGIYPEIKAPWFHHQ-----EGKDIAAATLEVLKKYGYT 169

Query: 212 GAYMSKEWLKQPIFIQSFAPTSLVYISNK------TDSPKIFLIDDVDILTEDT------ 259
               SK      +++Q+F P  L  I N+       D   + LI   D    +T      
Sbjct: 170 ----SKN---DKVYLQTFDPNELKRIKNELLPKMGMDLKLVQLIAYTD--WGETQEKDPG 220

Query: 260 ---NQSYSEITSDAYLNYIKEYCVGIGPWKDTVV-PVANNYSQTPTDLVARAHALDLQIH 315
              N  Y  + +   L  I +Y  G+GPW   ++   ++  +   TDLV  AH   L++H
Sbjct: 221 GWVNYDYDWMFTKGGLKEIAKYADGVGPWYSMIIEEKSSKGNIVLTDLVKDAHEAGLEVH 280

This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Escherichia coli periplasmic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46), GlpQ, and similar proteins. GP-GDE plays an essential role in the metabolic pathway of E. coli. It catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. E. coli possesses two major G3P uptake systems: Glp and Ugp, which contain genes coding for two different GP-GDEs. GlpQ gene from the E. coli glp operon codes for a periplasmic phosphodiesterase GlpQ, which is the prototype of this family. GlpQ is a dimeric enzyme that hydrolyzes periplasmic glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG), glycerophosphoinositol (GPI), and glycerophosphoserine (GPS), to the corresponding alcohols and G3P, which is subsequently transported into the cell through the GlpT transport system. Ca2+ is required for the enzymatic activity of GlpQ. This family also includes a surface-exposed lipoprotein, protein D (HPD), from Haemophilus influenza Type b and nontypeable strains, which shows very high sequence similarity with E. coli GlpQ. HPD has been characterized as a human immunoglobulin D-binding protein with glycerophosphodiester phosphodiesterase activity. It can hydrolyze phosphatidylcholine from host membranes to produce free choline on the lipopolysaccharides on the surface of pathogenic bacteria. Length = 318

>gnl|CDD|236859 PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional

 Score =  146 bits (370), Expect = 4e-41
 Identities = 96/335 (28%), Positives = 145/335 (43%), Gaps = 65/335 (19%)

Query: 11  LLFLSLIAGCAARPLYPLPSKLDIHKQPLQTSRPYNLAHRGSNGEFPEETAAAYMRAIEE 70
           LL  +L+AG AA        K+ I             AHRG++G  PE T  A   A  +
Sbjct: 8   LLLAALLAGSAAAAADS-AEKIVI-------------AHRGASGYLPEHTLPAKAMAYAQ 53

Query: 71  GADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVNTTGFFVVDFT 130
           GAD++E D++ +KD  L+  HD +LD  T++A+   F DR R           ++ +DFT
Sbjct: 54  GADYLEQDLVMTKDDQLVVLHDHYLDRVTDVAE--RFPDRAR-------KDGRYYAIDFT 104

Query: 131 LEELKTLRAKQRYSFRD----QQYNGKFP-------IITFEEYISIALDAQRV----VGI 175
           L+E+K+L+  + +   +    Q Y G+FP       + TFEE I             +GI
Sbjct: 105 LDEIKSLKFTEGFDIENGKKVQVYPGRFPMGKSDFRVHTFEEEIEFIQGLNHSTGKNIGI 164

Query: 176 YPEMKNPVFINQHVKWADGKKFEDKFVDTLKKYGYKGAYMSKEWLKQPIFIQSFAPTSLV 235
           YPE+K P F +Q     +GK    K ++ LKKYGY G           +++Q F    L 
Sbjct: 165 YPEIKAPWFHHQ-----EGKDIAAKVLEVLKKYGYTGK-------DDKVYLQCFDANELK 212

Query: 236 YISN------KTDSPKIFLIDDVD--------ILTEDTNQSYSEITSDAYLNYIKEYCVG 281
            I N        D   + LI   D           +  N +Y  +     +  + +Y  G
Sbjct: 213 RIKNELEPKMGMDLKLVQLIAYTDWNETQEKQPDGKWVNYNYDWMFKPGAMKEVAKYADG 272

Query: 282 IGPWKDTVV-PVANNYSQTPTDLVARAHALDLQIH 315
           IGP    +V   +   +   T +V  AH   L +H
Sbjct: 273 IGPDYHMLVDETSTPGNIKLTGMVKEAHQAKLVVH 307

Length = 355

>gnl|CDD|176513 cd08571, GDPD_SHV3_plant, Glycerophosphodiester phosphodiesterase domain of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins

 Score =  140 bits (356), Expect = 1e-39
 Identities = 76/273 (27%), Positives = 137/273 (50%), Gaps = 27/273 (9%)

Query: 47  LAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKE 106
           +A  G++G++P+ T  AY +AI +GAD ++ D+  +KDGV IC   + LD++T IA    
Sbjct: 4   IARGGASGDYPDSTDLAYQKAISDGADVLDCDVQLTKDGVPICLPSINLDNSTTIAS--V 61

Query: 107 FADRKRTCMVQGVNTTGFFVVDFTLEELKTLRAKQ----RYSFRDQQYNGKFPIITFEEY 162
           F  RK+T +V+G +T+G F  D T  E++TL+          FR+ + +    I+T E++
Sbjct: 62  FPKRKKTYVVEGQSTSGIFSFDLTWAEIQTLKPIISNPFSVLFRNPRNDNAGKILTLEDF 121

Query: 163 ISIALDAQRVVGIYPEMKNPVFINQHVKWADGKKFEDKFVDTLKKYGYKGAYMSKEWLKQ 222
           +++A     + G++  ++N  F+ +H     G    D  + +L K GY           +
Sbjct: 122 LTLAKPKS-LSGVWINVENAAFLAEH----KGLLSVDAVLTSLSKAGYDQTA-------K 169

Query: 223 PIFIQSFAPTSLVYISNKTDSPKIFLIDDVDILTEDTNQSYSEITSDAYLNYIKEYCVGI 282
            ++I S   + L     +  +  +F + DVD  TE         T  + L  IK++  G+
Sbjct: 170 KVYISSPDSSVLKSFKKRVGTKLVFRVLDVD-DTEPD-------TLLSNLTEIKKFASGV 221

Query: 283 GPWKDTVVPV-ANNYSQTPTDLVARAHALDLQI 314
              K  + PV ++++    T +V  AH   L++
Sbjct: 222 LVPKSYIWPVDSDSFLTPQTSVVQDAHKAGLEV 254

This subfamily corresponds to the glycerophosphodiester phosphodiesterase (GDPD) domain present in glycerophosphodiester phosphodiesterase (GP-GDE)-like protein SHV3 and SHV3-like proteins (SVLs), which may play an important role in cell wall organization. The prototype of this family is a glycosylphosphatidylinositol (GPI) anchored protein SHV3 encoded by shaven3 (shv3) gene from Arabidopsis thaliana. Members in this family show sequence homology to bacterial GP-GDEs (EC 3.1.4.46) that catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Both, SHV3 and SVLs, have two tandemly repeated GDPD domains whose biochemical functions remain unclear. The residues essential for interactions with the substrates and calcium ions in bacterial GP-GDEs are not conserved in SHV3 and SVLs, which suggests that the function of GDPD domains in these proteins might be distinct from those in typical bacterial GP-GDEs. In addition, the two tandem repeats show low sequence similarity to each other, suggesting they have different biochemical function. Most members of this family are Arabidopsis-specific gene products. To date, SHV3 orthologues are only found in Physcomitrella patens. Length = 302

>gnl|CDD|217317 pfam03009, GDPD, Glycerophosphoryl diester phosphodiesterase family

 Score =  129 bits (327), Expect = 4e-36
 Identities = 66/269 (24%), Positives = 98/269 (36%), Gaps = 61/269 (22%)

Query: 49  HRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFA 108
           HRG++G++PE T  A+ +A E GAD+IE D+  +KDGV +  HD  LD TT+ A      
Sbjct: 1   HRGASGDYPENTLLAFRKAAEAGADYIEFDVQLTKDGVPVVMHDFTLDRTTDGAG----- 55

Query: 109 DRKRTCMVQGVNTTGFFVVDFTLEELKTLRAKQRYSFRDQQYNGKFPIITFEEYISIALD 168
                            V D TLEELK L A    S        + P  T EE +     
Sbjct: 56  ----------------RVKDLTLEELKKLDAGAGNSP--PFSGERVP-PTLEEVLER--- 93

Query: 169 AQRVVGIYPEMKNPVFINQHVKWADGKKFED-KFVDTLKKYGYKGAYMSKEWLKQPIFIQ 227
               VG+  E+K             G   +    VD + K              + +   
Sbjct: 94  --WDVGLNIEIKIKQTPEAIAVEELGIVKDLLASVDEILKVD-----------PRRVIFS 140

Query: 228 SFAPTSLVYISNKTDS-PKIFLIDDVDILTEDTNQSYSEITSDAYLNYIKEYCVGIGPWK 286
           SF P +L  +     + P +FL        +   ++ +   + A L  +      +    
Sbjct: 141 SFNPDALQRLRELAPTLPLVFLTSGRAPALDPLERAAAAAGAPALLGGVSLVDEALVD-- 198

Query: 287 DTVVPVANNYSQTPTDLVARAHALDLQIH 315
                            V RAHA  L++H
Sbjct: 199 -----------------VKRAHARGLKVH 210

E. coli has two sequence related isozymes of glycerophosphoryl diester phosphodiesterase (GDPD) - periplasmic and cytosolic. This family also includes agrocinopine synthase, the similarity to GDPD has been noted. This family appears to have weak but not significant matches to mammalian phospholipase C pfam00388, which suggests that this family may adopt a TIM barrel fold. Length = 238

>gnl|CDD|176543 cd08601, GDPD_SaGlpQ_like, Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins

 Score =  128 bits (323), Expect = 3e-35
 Identities = 80/283 (28%), Positives = 112/283 (39%), Gaps = 74/283 (26%)

Query: 46  NLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHK 105
            +AHRG++G  PE T AAY  A E GAD+IE D+  +KDGVL+  HD  LD TTNI    
Sbjct: 3   VIAHRGASGYAPEHTFAAYDLAREMGADYIELDLQMTKDGVLVAMHDETLDRTTNIERPG 62

Query: 106 EFADRKRTCMVQGVNTTGFFVVDFTLEELKTLRA----------KQRYSFRDQQYNGKFP 155
                               V D+TL E+K L A            R S+   +      
Sbjct: 63  P-------------------VKDYTLAEIKQLDAGSWFNKAYPEYARESYSGLK------ 97

Query: 156 IITFEEYISIALDAQRVVGIYPEMKNP-VFINQHVKWADGKKFEDKFVDTLKKYGYKGAY 214
           + T EE I            Y E K+P ++             E+K + TL KYG     
Sbjct: 98  VPTLEEVIER---YGGRANYYIETKSPDLY----------PGMEEKLLATLDKYGLLTDN 144

Query: 215 MSKEWLKQPIFIQSFAPTSLVYISNKTDS-PKIFLIDDVDILTEDTNQSYSEITSDAYLN 273
           +        + IQSF+  SL  +     + P + L+   +             T D +L+
Sbjct: 145 LKNG----QVIIQSFSKESLKKLHQLNPNIPLVQLLWYGEG----------AETYDKWLD 190

Query: 274 YIKEYCVGIGPWKDTVVPVANNYSQTPTDLVARAHALDLQIHI 316
            IKEY +GIGP          + +     +V   H   L +H 
Sbjct: 191 EIKEYAIGIGP----------SIADADPWMVHLIHKKGLLVHP 223

This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46) from Staphylococcus aureus, Bacillus subtilis and similar proteins. Members in this family show very high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Length = 256

>gnl|CDD|223657 COG0584, UgpQ, Glycerophosphoryl diester phosphodiesterase [Energy production and conversion]

 Score =  108 bits (271), Expect = 9e-28
 Identities = 84/275 (30%), Positives = 117/275 (42%), Gaps = 56/275 (20%)

Query: 42  SRPYNLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNI 101
           + P  +AHRG++G  PE T AA+  A E+GAD+IE D+  +KDGVL+  HD  LD TTN 
Sbjct: 4   AMPLIIAHRGASGYAPENTLAAFELAAEQGADYIELDVQLTKDGVLVVIHDETLDRTTNG 63

Query: 102 ADHKEFADRKRTCMVQGVNTTGFFVVDFTLEELKTLRAKQRYSFRDQQYNGKFPIITFEE 161
                                   V D TL ELK L A    SFR   +  + P  T EE
Sbjct: 64  ---------------------LGTVRDLTLAELKRLDA---GSFRIPTFGEEIP--TLEE 97

Query: 162 YISIALDAQRVVGIYPEMKNPVFINQHVKWADGKKFEDKFVDTLKKYGYKGAYMSKEWLK 221
            +       R +G+Y E+K+P F  Q        K     +  LK+YG   A        
Sbjct: 98  LL---EATGRKIGLYIEIKSPGFHPQEG------KILAALLALLKRYGGTAA-------D 141

Query: 222 QPIFIQSFAPTSLVYISNKTDSPKIFLIDDVDILTEDTNQSYSEITSDAYLNYIKEYCVG 281
             + + SF   +L  I  K  +P + L      L  D    Y  +     L  +  Y  G
Sbjct: 142 DRVILSSFDHAALKRI--KRLAPDLPL-----GLLLDATDQYDWMELPRALKEVALYADG 194

Query: 282 IGPWKDTVVPVANNYSQTPTDLVARAHALDLQIHI 316
           +GP    +  +        T+LV  AHA  L++H+
Sbjct: 195 VGPDWAMLAEL-------LTELVDDAHAAGLKVHV 222

Length = 257

>gnl|CDD|176545 cd08603, GDPD_SHV3_repeat_1, Glycerophosphodiester phosphodiesterase domain repeat 1 of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins

 Score =  108 bits (271), Expect = 2e-27
 Identities = 83/275 (30%), Positives = 133/275 (48%), Gaps = 28/275 (10%)

Query: 44  PYNLAHRGSNGEFPEETAAAYMRAIEEGA-DF-IETDILASKDGVLICHHDVFLDDTTNI 101
           P  +A  G +G FP+ +  AY  A    + D  +  D+  +KDGV IC  D+ LD++T I
Sbjct: 1   PLVIARGGFSGLFPDSSLFAYQFAASSSSPDVALWCDLQLTKDGVGICLPDLNLDNSTTI 60

Query: 102 ADHKEFADRKRTCMVQGVNTTGFFVVDFTLEELKTLRAKQRYSFRDQQYNGKFPIITFEE 161
           A    +  RK+T  V GV+T G+F VDFTL EL+ +   Q    R   ++G++PI T E+
Sbjct: 61  ARV--YPKRKKTYSVNGVSTKGWFSVDFTLAELQQVTLIQGIFSRTPIFDGQYPISTVED 118

Query: 162 YISIALDAQRVVGIYPEMKNPVFINQHVKWADGKKFEDKFVDTLKKYGYKGAYMSKEWLK 221
            +++A    +  G++  +++  F  QH            ++ +L K   K  Y+S   + 
Sbjct: 119 VVTLA----KPEGLWLNVQHDAFYQQH------NLSMSSYLLSLSK-TVKVDYISSPEVG 167

Query: 222 QPIFIQSFAPTSLVYISNKTDSPK-IFLIDDVDILTEDTNQSYSEITSDAYLNYIKEYCV 280
              F++S             +  K +F   D D +   TNQ+Y  I  +  L +IK +  
Sbjct: 168 ---FLKSIGGRV------GRNGTKLVFRFLDKDDVEPSTNQTYGSILKN--LTFIKTFAS 216

Query: 281 GIGPWKDTVVPV-ANNYSQTPTDLVARAHALDLQI 314
           GI   K  + PV ++ Y Q  T LV  AH   L++
Sbjct: 217 GILVPKSYIWPVDSDQYLQPATSLVQDAHKAGLEV 251

This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) repeat 1 present in glycerophosphodiester phosphodiesterase (GP-GDE)-like protein SHV3 and SHV3-like proteins (SVLs), which may play an important role in cell wall organization. The prototype of this family is a glycosylphosphatidylinositol (GPI) anchored protein SHV3 encoded by shaven3 (shv3) gene from Arabidopsis thaliana. Members in this family show sequence homology to bacterial GP-GDEs (EC 3.1.4.46) that catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Both, SHV3 and SVLs, have two tandemly repeated GDPD domains whose biochemical functions remain unclear. The residues essential for interactions with the substrates and calcium ions in bacterial GP-GDEs are not conserved in SHV3 and SVLs, which suggests that the function of GDPD domains in these proteins might be distinct from those in typical bacterial GP-GDEs. In addition, the two tandem repeats show low sequence similarity to each other, suggesting they have different biochemical function. Most of the members of this family are Arabidopsis-specific gene products. To date, SHV3 orthologues are only found in Physcomitrella patens. This family includes domain I, the first GDPD domain of SHV3 and SVLs. Length = 299

>gnl|CDD|176524 cd08582, GDPD_like_2, Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases

 Score = 98.2 bits (245), Expect = 3e-24
 Identities = 60/187 (32%), Positives = 87/187 (46%), Gaps = 45/187 (24%)

Query: 48  AHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEF 107
           AHRG++ E PE T AA+  A E+GAD IETD+  +KDG L+C H    D T         
Sbjct: 3   AHRGASAEAPENTLAAFELAWEQGADGIETDVRLTKDGELVCVH----DPTL-------- 50

Query: 108 ADRKRTCMVQGVNTTGFFVVDFTLEELKTLRAKQRYSFRDQQYNGKFPIITFEEYISIAL 167
              KRT    G       V D TL EL+ L      S++ + Y G+  + T EEY++I  
Sbjct: 51  ---KRTSGGDGA------VSDLTLAELRKLDIG---SWKGESYKGE-KVPTLEEYLAIVP 97

Query: 168 DAQRVVGIYPEMKNPVFINQHVKWADGKKFEDKFVDTLKKYGYKGAYMSKEWLKQPIFIQ 227
              + + I  E+K+P           G + E++ +  LK+ G           +Q + I 
Sbjct: 98  KYGKKLFI--EIKHPRR---------GPEAEEELLKLLKESGLLP--------EQIVII- 137

Query: 228 SFAPTSL 234
           SF   +L
Sbjct: 138 SFDAEAL 144

This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity to Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Length = 233

>gnl|CDD|176546 cd08604, GDPD_SHV3_repeat_2, Glycerophosphodiester phosphodiesterase domain repeat 2 of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins

 Score = 91.2 bits (227), Expect = 4e-21
 Identities = 63/280 (22%), Positives = 129/280 (46%), Gaps = 36/280 (12%)

Query: 47  LAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKE 106
           ++H G++G++P  T  AY +A+++GAD I+  +  SKDGV  C   + L ++T +A  K 
Sbjct: 4   ISHNGASGDYPGCTDLAYQKAVKDGADVIDCSVQMSKDGVPFCLDSINLINSTTVATSK- 62

Query: 107 FADRKRTCMVQGVNTT-GFFVVDFTLEELKTLRAK--QRYS----FRDQQYNGKFPIITF 159
           F    R   V  + +T G F  D T  E++TL+      YS    FR+         +T 
Sbjct: 63  F--SNRATTVPEIGSTSGIFTFDLTWSEIQTLKPAISNPYSVTGLFRNPANKNAGKFLTL 120

Query: 160 EEYISIALDAQRVVGIYPEMKNPVFINQHVKWADGKKFEDKFVDTLKKYGYKGAYMSKEW 219
            +++ +A +   + G+   ++N  ++ +      G    D  +D L   GY       + 
Sbjct: 121 SDFLDLAKNKS-LSGVLINVENAAYLAEK----KGLDVVDAVLDALTNAGY-----DNQT 170

Query: 220 LKQPIFIQSFAPTSLVYISNKTDSPKIFLIDDVDILTEDTNQSYSEI--TSDAYLNYIKE 277
            ++ + IQS   + L     +    +++++D+              I   SD+ +  IK+
Sbjct: 171 AQK-VLIQSTDSSVLAAFKKQISYERVYVVDE-------------TIRDASDSSIEEIKK 216

Query: 278 YCVGIGPWKDTVVPVANNYSQTPTDLVARAHALDLQIHIG 317
           +   +   + +V PV+ ++    T++V +  + +L +++ 
Sbjct: 217 FADAVVIDRGSVFPVSTSFLTRQTNVVEKLQSANLTVYVE 256

This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) repeat 2 present in glycerophosphodiester phosphodiesterase (GP-GDE)-like protein SHV3 and SHV3-like proteins (SVLs), which may play important an role in cell wall organization. The prototype of this family is a glycosylphosphatidylinositol (GPI) anchored protein SHV3 encoded by shaven3 (shv3) gene from Arabidopsis thaliana. Members in this family show sequence homology to bacterial GP-GDEs (EC 3.1.4.46) that catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Both, SHV3 and SVLs, have two tandemly repeated GDPD domains whose biochemical functions remain unclear. The residues essential for interactions with the substrates and calcium ions in bacterial GP-GDEs are not conserved in SHV3 and SVLs, which suggests that the function of GDPD domains in these proteins might be distinct from those in typical bacterial GP-GDEs. In addition, the two tandem repeats show low sequence similarity to each other, suggesting they have different biochemical function. Most of the members of this family are Arabidopsis-specific gene products. To date, SHV3 orthologues are only found in Physcomitrella patens. This CD includes domain II (the second GDPD domain of SHV3 and SVLs), which is necessary for SHV3 function. Length = 300

>gnl|CDD|176506 cd08563, GDPD_TtGDE_like, Glycerophosphodiester phosphodiesterase domain of Thermoanaerobacter tengcongensis and similar proteins

 Score = 89.2 bits (222), Expect = 6e-21
 Identities = 67/246 (27%), Positives = 97/246 (39%), Gaps = 66/246 (26%)

Query: 44  PYNLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVL-ICHHDVFLDDTTNIA 102
               AHRG +G  PE T  A+ +AIE GAD IE D+  +KDG L + H     D+T +  
Sbjct: 1   TLIFAHRGYSGTAPENTLLAFKKAIEAGADGIELDVHLTKDGQLVVIH-----DETVD-- 53

Query: 103 DHKEFADRKRTCMVQGVNTTGFFVVDFTLEELKTLRAKQRYS--FRDQQYNGKFPIITFE 160
                    RT   +G      +V D TLEELK L A   +   F  ++      I T E
Sbjct: 54  ---------RTTNGKG------YVKDLTLEELKKLDAGSWFDEKFTGEK------IPTLE 92

Query: 161 EYISIALDAQRVVGIYPEMKNPVFINQHVKWADGKKFEDKFVDTLKKYGYKGAYMSKEWL 220
           E + +  D   ++ I  E+K  V              E K ++ +K+Y           L
Sbjct: 93  EVLDLLKDKDLLLNI--EIKTDVI--------HYPGIEKKVLELVKEYN----------L 132

Query: 221 KQPIFIQSFAPTSLVYISNKTDSPKIFLIDDVDILTEDTNQSYSEITSDAYLNYIKEYCV 280
           +  +   SF   SL  +  K   PKI     + +L E   Q           +Y K+   
Sbjct: 133 EDRVIFSSFNHESLKRL--KKLDPKI----KLALLYETGLQD--------PKDYAKKIGA 178

Query: 281 -GIGPW 285
             + P 
Sbjct: 179 DSLHPD 184

This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermoanaerobacter tengcongensis glycerophosphodiester phosphodiesterase (TtGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Despite the fact that most of GDPD family members exist as the monomer, TtGDE can function as a dimeric unit. Its catalytic mechanism is based on the general base-acid catalysis, which is similar to that of phosphoinositide-specific phospholipases C (PI-PLCs, EC 3.1.4.11). A divalent metal cation is required for the enzyme activity of TtGDE. Length = 230

>gnl|CDD|176504 cd08561, GDPD_cytoplasmic_ScUgpQ2_like, Glycerophosphodiester phosphodiesterase domain of Streptomyces coelicolor cytoplasmic phosphodiesterases UgpQ2 and similar proteins

 Score = 85.8 bits (213), Expect = 1e-19
 Identities = 46/124 (37%), Positives = 57/124 (45%), Gaps = 33/124 (26%)

Query: 46  NLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHK 105
            +AHRG  G  PE T  A+  A+E GAD +ETD+ A+KDGVL+  HD  LD TT+     
Sbjct: 1   VIAHRGGAGLAPENTLLAFEDAVELGADVLETDVHATKDGVLVVIHDETLDRTTDG---- 56

Query: 106 EFADRKRTCMVQGVNTTGFFVVDFTLEELKTLRA--------KQRYSFRDQQYNGKFPII 157
                           TG  V D TL EL+ L A         + Y +R Q       I 
Sbjct: 57  ----------------TG-PVADLTLAELRRLDAGYHFTDDGGRTYPYRGQ----GIRIP 95

Query: 158 TFEE 161
           T EE
Sbjct: 96  TLEE 99

This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized cytoplasmic phosphodiesterases which predominantly exist in bacteria. The prototype of this family is a putative cytoplasmic phosphodiesterase encoded by gene ulpQ2 (SCO1419) in the Streptomyces coelicolor genome. It is distantly related to the Escherichia coli cytoplasmic phosphodiesterases UgpQ that catalyzes the hydrolysis of glycerophosphodiesters at the inner side of the cytoplasmic membrane to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Length = 249

>gnl|CDD|176509 cd08566, GDPD_AtGDE_like, Glycerophosphodiester phosphodiesterase domain of Agrobacterium tumefaciens and similar proteins

 Score = 81.6 bits (202), Expect = 3e-18
 Identities = 51/164 (31%), Positives = 71/164 (43%), Gaps = 46/164 (28%)

Query: 48  AHRGSNGE-FPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKE 106
           AHRG  G   PE + AA   AI+ GAD +E D+  +KDGVL+  HD  LD TTN      
Sbjct: 4   AHRGGWGAGAPENSLAAIEAAIDLGADIVEIDVRRTKDGVLVLMHDDTLDRTTNG----- 58

Query: 107 FADRKRTCMVQGVNTTGFFVVDFTLEELKTLRAKQRYS-FRDQQYNGKFPIITFEEYISI 165
                           G  V D TL E++ LR K       D++      + T EE ++ 
Sbjct: 59  ---------------KG-KVSDLTLAEIRKLRLKDGDGEVTDEK------VPTLEEALAW 96

Query: 166 ALDAQRVVGIYPEMKNPVFINQHVKWADGKKFEDKFVDTLKKYG 209
           A             K  + +N  +K AD     D+ +  +KK+G
Sbjct: 97  A-------------KGKILLNLDLKDAD----LDEVIALVKKHG 123

This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Agrobacterium tumefaciens glycerophosphodiester phosphodiesterase (AtGDE, EC 3.1.4.46) and its uncharacterized eukaryotic homolgoues. Members in this family shows high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. AtGDE exists as a hexamer that is a trimer of dimers, which is unique among current known GDPD family members. However, it remains unclear if the hexamer plays a physiological role in AtGDE enzymatic function. Length = 240

>gnl|CDD|176499 cd08556, GDPD, Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins

 Score = 75.0 bits (185), Expect = 4e-16
 Identities = 25/46 (54%), Positives = 35/46 (76%)

Query: 48 AHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDV 93
          AHRG++GE PE T AA+ +A+E GAD +E D+  +KDGVL+  HD+
Sbjct: 3  AHRGASGEAPENTLAAFRKALEAGADGVELDVQLTKDGVLVVIHDI 48

The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcohols are major sources of carbon and phosphate. Its catalytic mechanism is based on the metal ion-dependent acid-base reaction, which is similar to that of phosphoinositide-specific phospholipases C (PI-PLCs, EC 3.1.4.11). Both, GDPD related proteins and PI-PLCs, belong to the superfamily of PI-PLC-like phosphodiesterases. Length = 189

>gnl|CDD|176517 cd08575, GDPD_GDE4_like, Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4-like proteins

 Score = 76.1 bits (188), Expect = 5e-16
 Identities = 51/172 (29%), Positives = 72/172 (41%), Gaps = 42/172 (24%)

Query: 44  PYNLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIAD 103
           P ++AHRG   EFPE T AA+  A++ GAD +E D+  +KDG ++  HD           
Sbjct: 1   PLHIAHRGGAAEFPENTIAAFRHAVKNGADMLELDVQLTKDGQVVVFHD----------- 49

Query: 104 HKEFADRKRTCMVQGVNTTGFFVVDFTLEELKTLRAKQRYSFRDQQYNGKFP------II 157
                D  R     G+      V D T  EL  L A   Y+F D    G         I 
Sbjct: 50  ----WDLDRLTGGSGL------VSDLTYAELPPLDAGYGYTF-DGGKTGYPRGGGDGRIP 98

Query: 158 TFEEYISIALDAQRVVGIYPEMKNPVFINQHVKWADGKKFEDKFVDTLKKYG 209
           T EE       A      +P+   P+ I+  +K  D ++     +D L+KY 
Sbjct: 99  TLEE----VFKA------FPDT--PINID--IKSPDAEELIAAVLDLLEKYK 136

This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE4 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 1 (GDPD1)) and similar proteins. Mammalian GDE4 is a transmembrane protein whose cellular function is not elucidated. It is expressed widely, including in placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocytes. It is also expressed in the growth cones in neuroblastoma Neuro2a cells, which suggests mammalian GDE4 may play some distinct role from other members of mammalian GDEs family. Also included in this subfamily are uncharacterized mammalian glycerophosphodiester phosphodiesterase domain-containing protein 3 (GDPD3) and similar proteins which display very high sequence homology to mammalian GDE4. Length = 264

>gnl|CDD|176521 cd08579, GDPD_memb_like, Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases

 Score = 72.6 bits (179), Expect = 5e-15
 Identities = 43/164 (26%), Positives = 64/164 (39%), Gaps = 39/164 (23%)

Query: 48  AHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEF 107
           AHRG +    E T  A   AI+   D++E D+  +KDG  +  HD  L            
Sbjct: 3   AHRGVSSNGVENTLEALEAAIKAKPDYVEIDVQETKDGQFVVMHDANLKRLA-------- 54

Query: 108 ADRKRTCMVQGVNTTGFFVVDFTLEELKTLRAKQRYSFRDQQYNGKFPIITFEEYISIAL 167
                     GVN     V D TLEELK L   +        +  K P  + +EY+++A 
Sbjct: 55  ----------GVNKK---VWDLTLEELKKLTIGENG------HGAKIP--SLDEYLALAK 93

Query: 168 DAQRVVGIYPEMKNPVFINQHVKWADGKKFEDKFVDTLKKYGYK 211
             +    +  E+K     + H    D     +KFV   K+   +
Sbjct: 94  GLK--QKLLIELK----PHGH----DSPDLVEKFVKLYKQNLIE 127

This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial glycerophosphodiester phosphodiesterases. In addition to a C-terminal GDPD domain, most members in this family have an N-terminus that functions as a membrane anchor. Length = 220

>gnl|CDD|176503 cd08560, GDPD_EcGlpQ_like_1, Glycerophosphodiester phosphodiesterase domain similar to Escherichia coli periplasmic phosphodiesterase (GlpQ) include uncharacterized proteins

 Score = 74.0 bits (182), Expect = 7e-15
 Identities = 63/242 (26%), Positives = 97/242 (40%), Gaps = 36/242 (14%)

Query: 36  KQPLQTSRPYNLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVF- 94
           ++P + +  +++ HRG+  +FPE T  +Y  A   GA  +E D+  +KD  L+C H    
Sbjct: 10  EKPFRKTD-FSIGHRGAPLQFPEHTRESYEAAARMGAGILECDVTFTKDRELVCRHSQCD 68

Query: 95  LDDTTNIADHKEFADRKRTCMVQGVNTTGFFV----VDFTLEELKTLRAKQRYS------ 144
           L  TTNI    E A +          T          D TL E K+L  K   S      
Sbjct: 69  LHTTTNILAIPELAAKCTQPFTPANATKPASAECCTSDITLAEFKSLCGKMDASNPSATT 128

Query: 145 ----------FRDQQYNGKFPIITFEEYISIALDAQRVVGIYPEMKNPVFINQHVKWADG 194
                     +R   Y     ++T +E  SIAL     V + PE+K+P            
Sbjct: 129 PEEYQNGTPDWRTDLYATCGTLMTHKE--SIALFKSLGVKMTPELKSPSVPMPFDGNYTQ 186

Query: 195 KKFEDKFVDTLKKYGYKGAYMSKEWLKQPIFIQSFAPTSLVY-ISNKTDSPK--IFLIDD 251
           + +  + +D  K+    G   S+ W       QSF    + Y I N+ D  +  ++L D 
Sbjct: 187 EDYAQQMIDEYKE---AGVPPSRVWP------QSFNLDDIFYWIKNEPDFGRQAVYLDDR 237

Query: 252 VD 253
            D
Sbjct: 238 DD 239

This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and their hypothetical homologs. Members in this subfamily show high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Length = 356

>gnl|CDD|176512 cd08570, GDPD_YPL206cp_fungi, Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL206cp and similar proteins

 Score = 71.9 bits (177), Expect = 1e-14
 Identities = 33/114 (28%), Positives = 49/114 (42%), Gaps = 29/114 (25%)

Query: 48  AHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEF 107
            HRG   ++PE T  A+ +A+E GAD IETD+  +KDGV++  HD               
Sbjct: 3   GHRGYKAKYPENTLLAFEKAVEAGADAIETDVHLTKDGVVVISHD--------------- 47

Query: 108 ADRKRTCMVQGVNTTGFFVVDFTLEELKTLRAKQRYSFRDQQYNGKFPIITFEE 161
            + KR          G  + D T +EL  LR  +             P+ T ++
Sbjct: 48  PNLKRC-----FGKDGLIIDDSTWDELSHLRTIE---------EPHQPMPTLKD 87

This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Saccharomyces cerevisiae YPL206cp and uncharacterized hypothetical homologs existing in fungi. The product of S. cerevisiae ORF YPL206c (PGC1), YPL206cp (Pgc1p), displays homology to bacterial and mammalian glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. S. cerevisiae YPL206cp is an integral membrane protein with a single GDPD domain following by a short hydrophobic C-terminal tail that may function as a membrane anchor. This protein plays an essential role in the regulation of the cardiolipin (CL) biosynthetic pathway in yeast by removing the excess phosphatidylglycerol (PG) content of membranes via a phospholipase C-type degradation mechanism. YPL206cp has been characterized as a PG-specific phospholipase C that selectively catalyzes the cleavage of PG, not glycerophosphoinositol (GPI) or glycerophosphocholine (GPC), to diacylglycerol (DAG) and glycerophosphate. Members in this family are distantly related to S. cerevisiae YPL110cp, which selectively hydrolyzes glycerophosphocholine (GPC), not glycerophosphoinositol (GPI), to generate choline and glycerolphosphate, and has been characterized as a cytoplasmic GPC-specific phosphodiesterase. Length = 234

>gnl|CDD|176510 cd08567, GDPD_SpGDE_like, Glycerophosphodiester phosphodiesterase domain of putative Silicibacter pomeroyi glycerophosphodiester phosphodiesterase and similar proteins

 Score = 72.3 bits (178), Expect = 1e-14
 Identities = 50/209 (23%), Positives = 84/209 (40%), Gaps = 37/209 (17%)

Query: 48  AHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLD-DTTNIADHKE 106
            HRG+ G  PE T  A+ +A++ G D +E D++ +KDGV++  HD  L+ D T   D   
Sbjct: 5   GHRGARGLLPENTLPAFAKALDLGVDTLELDLVLTKDGVIVVSHDPKLNPDITRDPDGAW 64

Query: 107 FADRKRTCMVQGVNTTGFFVVDFTLEELKTLR--AKQRYS-----FRDQQYNGKFPIITF 159
                              + + TL E+K L    K+  S     F +Q       I T 
Sbjct: 65  LPYEGPA------------LYELTLAEIKQLDVGEKRPGSDYAKLFPEQIPVPGTRIPTL 112

Query: 160 EEYISIA--LDAQRVVGIYPEMKNPVFINQHVKWADGKKFEDKFVDTLKKYGYKGAYMSK 217
           EE  ++      Q+V     E K+    +        ++F D  +  ++K G        
Sbjct: 113 EEVFALVEKYGNQKVR-FNIETKSDPDRDILH--PPPEEFVDAVLAVIRKAG-------- 161

Query: 218 EWLKQPIFIQSFAPTSLVYISNKTDSPKI 246
               + + +QSF   +L  +  +  +P I
Sbjct: 162 -LEDR-VVLQSFDWRTLQEV--RRLAPDI 186

This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and similar proteins. The prototype of this CD is a putative GP-GDE from Silicibacter pomeroyi (SpGDE). It shows high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Length = 263

>gnl|CDD|176515 cd08573, GDPD_GDE1, Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE1 and similar proteins

 Score = 70.0 bits (172), Expect = 6e-14
 Identities = 56/199 (28%), Positives = 80/199 (40%), Gaps = 47/199 (23%)

Query: 48  AHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEF 107
            HRG+  + PE T AA+ +A + GAD +E D+  +KDGV +  HD  +D TT        
Sbjct: 3   GHRGAGHDAPENTLAAFRQAKKNGADGVEFDLEFTKDGVPVLMHDDTVDRTT-------- 54

Query: 108 ADRKRTCMVQGVNTTGFFVVDFTLEELKTLRAKQRYSFRDQQYNGKFPIITFEEYISIAL 167
                       + TG  V + T EEL+ L A  ++    +    K P  T EE +   L
Sbjct: 55  ------------DGTG-LVAELTWEELRKLNAAAKHRLSSRFPGEKIP--TLEEAVKECL 99

Query: 168 DAQRVVGIYPEMKNPVFINQHVKWADGKKFEDKFVDTLKKYGYKGAYMSKEWLKQPIFIQ 227
                       +N + +   V     K    K VD LK       +     L     + 
Sbjct: 100 ------------ENNLRMIFDV-----KSNSSKLVDALKN-----LFKKYPGLYDKAIVC 137

Query: 228 SFAPTSLVYISNKTDSPKI 246
           SF P  ++Y   K D PKI
Sbjct: 138 SFNPI-VIYKVRKAD-PKI 154

This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE1 (also known as MIR16, membrane interacting protein of RGS16) and their metazoan homologs. GDE1 is widely expressed in mammalian tissues, including the heart, brain, liver, and kidney. It shows sequence homology to bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyzes the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. GDE1 has been characterized as GPI-GDE (EC 3.1.4.44) that selectively hydrolyzes extracellular glycerophosphoinositol (GPI) to generate glycerol phosphate and inositol. It functions as an integral membrane-bound glycoprotein interacting with regulator of G protein signaling protein RGS16, and is modulated by G protein-coupled receptor (GPCR) signaling. In addition, GDE1 may interact with PRA1 domain family, member 2 (PRAF2, also known as JM4), which is an interacting protein of the G protein-coupled chemokine receptor CCR5. The catalytic activity, which is dependent on the integrity of the GDPD domain, is required for GDE1 cellular function. Length = 258

>gnl|CDD|176523 cd08581, GDPD_like_1, Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases

 Score = 67.7 bits (166), Expect = 3e-13
 Identities = 32/135 (23%), Positives = 52/135 (38%), Gaps = 24/135 (17%)

Query: 48  AHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEF 107
           AHRG    +PE T   +  A++ GA F+E D+  S DGV +  HD               
Sbjct: 3   AHRGYPARYPENTLVGFRAAVDAGARFVEFDVQLSADGVPVVFHD--------------- 47

Query: 108 ADRKRTCMVQGVNTTGFFVVDFTLEELKTLRAKQRYSFRDQQYNGKFPIITFEEYISIAL 167
               R   V+G+      + +    EL +LR  +   F  +      P+ +    +   L
Sbjct: 48  DTLLRLTGVEGL------LHELEDAELDSLRVAEPARFGSRFAG--EPLPSLAA-VVQWL 98

Query: 168 DAQRVVGIYPEMKNP 182
                V ++ E+K  
Sbjct: 99  AQHPQVTLFVEIKTE 113

This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity to Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Length = 229

>gnl|CDD|176505 cd08562, GDPD_EcUgpQ_like, Glycerophosphodiester phosphodiesterase domain in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase UgpQ and similar proteins

 Score = 66.5 bits (163), Expect = 9e-13
 Identities = 38/125 (30%), Positives = 53/125 (42%), Gaps = 29/125 (23%)

Query: 48  AHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEF 107
           AHRG++   PE T AA+  A E G  ++E D+  S DG L+  HD  LD TTN       
Sbjct: 3   AHRGASSLAPENTLAAFRAAAELGVRWVEFDVKLSGDGTLVLIHDDTLDRTTNG------ 56

Query: 108 ADRKRTCMVQGVNTTGFFVVDFTLEELKTLRAKQRYS--FRDQQYNGKFPIITFEEYISI 165
                         +G  V + T  EL  L A   +S  F  +      PI T  + + +
Sbjct: 57  --------------SG-AVTELTWAELAQLDAGSWFSPEFAGE------PIPTLADVLEL 95

Query: 166 ALDAQ 170
           A +  
Sbjct: 96  ARELG 100

This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46), UgpQ, and similar proteins. GP-GDE plays an essential role in the metabolic pathway of E. coli. It catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. E. coli possesses two major G3P uptake systems: Glp and Ugp, which contain genes coding for two distinct GP-GDEs. UgpQ gene from the E. coli ugp operon codes for a cytosolic phosphodiesterase GlpQ, which is the prototype of this family. Various glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG), glycerophosphoinositol (GPI), and glycerophosphoserine (GPS), can only be hydrolyzed by UgpQ during transport at the inner side of the cytoplasmic membrane to alcohols and G3P, which is a source of phosphate. In contrast to Ca2+-dependent periplasmic phosphodiesterase GlpQ, cytosolic phosphodiesterase UgpQ requires divalent cations, such as Mg2+, Co2+, or Mn2+, for its enzyme activity. Length = 229

>gnl|CDD|176508 cd08565, GDPD_pAtGDE_like, Glycerophosphodiester phosphodiesterase domain of putative Agrobacterium tumefaciens glycerophosphodiester phosphodiesterase and similar proteins

 Score = 65.9 bits (161), Expect = 1e-12
 Identities = 47/190 (24%), Positives = 71/190 (37%), Gaps = 48/190 (25%)

Query: 48  AHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEF 107
            HRG    +PE T   + +A+E G D +E D+  + DG ++  HD  LD TT        
Sbjct: 3   GHRGGRNLWPENTLEGFRKALELGVDAVEFDVHLTADGEVVVIHDPTLDRTT-------- 54

Query: 108 ADRKRTCMVQGVNTTGFFVVDFTLEELKTLRAKQRYSFRDQQYNGKFPIITFEEYISIAL 167
                       + TG  V D TL E K LR   R SF ++       I T EE +++  
Sbjct: 55  ------------HGTG-AVRDLTLAERKALRL--RDSFGEK-------IPTLEEVLALFA 92

Query: 168 DAQRVVGIYPEMKNPVFINQHVKWADGKKFEDKFVDTLKKYGYKGAYMSKEWLKQPIFIQ 227
                      ++  V I                  TL+++G          L++ +   
Sbjct: 93  P--------SGLELHVEIKTDADGTPYPGAAALAAATLRRHGL---------LERSVL-T 134

Query: 228 SFAPTSLVYI 237
           SF P  L  +
Sbjct: 135 SFDPAVLTEV 144

This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative Agrobacterium tumefaciens glycerophosphodiester phosphodiesterase (pAtGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Length = 235

>gnl|CDD|176511 cd08568, GDPD_TmGDE_like, Glycerophosphodiester phosphodiesterase domain of Thermotoga maritime and similar proteins

 Score = 59.2 bits (144), Expect = 2e-10
 Identities = 23/55 (41%), Positives = 32/55 (58%)

Query: 47  LAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNI 101
           L HRG   ++PE T  A+ +AIE GAD +E D+  +KDG L+  HD  L     +
Sbjct: 3   LGHRGYRAKYPENTLEAFKKAIEYGADGVELDVWLTKDGKLVVLHDENLKRVGGV 57

This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermotoga maritime glycerophosphodiester phosphodiesterase (TmGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. TmGDE exists as a monomer that might be the biologically relevant form. Length = 226

>gnl|CDD|176553 cd08612, GDPD_GDE4, Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4 and similar proteins

 Score = 57.6 bits (140), Expect = 1e-09
 Identities = 43/179 (24%), Positives = 67/179 (37%), Gaps = 40/179 (22%)

Query: 35  HKQPLQTSRPYNLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVF 94
           HK+        +++HRG +GE  E T  A+  A++ G D +E D+  +KDG ++  HD  
Sbjct: 18  HKKKKSPFPCRHISHRGGSGENLENTMEAFEHAVKVGTDMLELDVHLTKDGQVVVSHDEN 77

Query: 95  LDDTTNIADHKEFADRKRTCMVQGVNTTGFFVVDFTLEELKTLRAKQRYSF-RDQQYNGK 153
           L                R+C   GV+     V D    +L     K   +F        K
Sbjct: 78  L---------------LRSC---GVDKL---VSDLNYADLPPYLEKLEVTFSPGDYCVPK 116

Query: 154 F---PIITFEEYISIALDAQRVVGIYPEMKNPVFINQHVKWADGKKFEDKFVDTLKKYG 209
                I   EE          V   +P+      IN  +K  +  +   K  D ++KY 
Sbjct: 117 GSDRRIPLLEE----------VFEAFPDTP----INIDIK-VENDELIKKVSDLVRKYK 160

This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE4 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 1 (GDPD1)) and similar proteins. Mammalian GDE4 is a transmembrane protein whose cellular function has not yet been elucidated. It is expressed widely, including in placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocytes. It is also expressed in the growth cones in neuroblastoma Neuro2a cells, which suggests GDE4 may play some distinct role from other members of the GDE family. Length = 300

>gnl|CDD|176516 cd08574, GDPD_GDE_2_3_6, Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE2, GDE3, GDE6-like proteins

 Score = 56.5 bits (137), Expect = 3e-09
 Identities = 34/111 (30%), Positives = 50/111 (45%), Gaps = 13/111 (11%)

Query: 43  RPYNLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIA 102
           +P  + HRG+    PE T  ++ +A+E G   +ETD+  S DGV    HD  L  TTN+A
Sbjct: 1   KPALIGHRGAPMLAPENTLMSFEKALEHGVYGLETDVTISYDGVPFLMHDRTLRRTTNVA 60

Query: 103 DHKEFADRKRTCMVQGVNTTGFFVVDFTLEELKTLRAKQRYSFRDQQYNGK 153
           D   F +R           +      FT  +L+ L A Q +   D  +   
Sbjct: 61  D--VFPERAHE------RAS-----MFTWTDLQQLNAGQWFLKDDPFWTAS 98

This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian glycerophosphodiester phosphodiesterase domain-containing protein subtype 5 (GDE2), subtype 2 (GDE3), subtype 1 (GDE6), and their eukaryotic homologs. Mammalian GDE2, GDE3, and GDE6 show very high sequence similarity to each other and have been classified into the same family. Although they are all transmembrane proteins, based on different pattern of tissue distribution, these enzymes might display diverse cellular functions. Mammalian GDE2 is primarily expressed in mature neurons. It selectively hydrolyzes glycerophosphocholine (GPC) and mainly functions in a complex with an antioxidant scavenger peroxiredoxin1 (Prdx1) to control motor neuron differentiation in the spinal cord. Mammalian GDE3 is specifically expressed in bone tissues and spleen. It selectively hydrolyzes extracellular glycerophosphoinositol (GPI) to generate inositol 1-phosphate (Ins1P) and glycerol and functions as an inducer of osteoblast differentiation. Mammalian GDE6 is predominantly expressed in the spermatocytes of testis, and its specific physiological function has not been elucidated yet. Length = 252

>gnl|CDD|176527 cd08585, GDPD_like_3, Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases

 Score = 55.4 bits (134), Expect = 6e-09
 Identities = 45/199 (22%), Positives = 68/199 (34%), Gaps = 64/199 (32%)

Query: 41  TSRPYNLAHRG---SNGEFPEETAAAYMRAIEEGADF-IETDILASKDGVLICHHDVFLD 96
             RP   AHRG    +   PE + +A+  A E  A + IE D+  + DG ++  HD    
Sbjct: 3   KDRPI--AHRGLHDRDAGIPENSLSAFRAAAE--AGYGIELDVQLTADGEVVVFHD---- 54

Query: 97  DTTNIADHKEFADRKRTCMVQGVNTTGFFVVDFTLEELKTLRAKQRYSFRDQQYNGKFPI 156
                       + KR   V+G       V + T  EL+ LR                 I
Sbjct: 55  -----------DNLKRLTGVEG------RVEELTAAELRALRLL----------GTDEHI 87

Query: 157 ITFEEYIS-IALDAQRVVGIYPEMKNPVFINQHVKWADGKKFEDKFVDTLKKYGYKGAYM 215
            T +E +  +A     ++    E+K+                E + +  LK   YKG   
Sbjct: 88  PTLDEVLELVAGRVPLLI----ELKSC--------GGGDGGLERRVLAALK--DYKGPAA 133

Query: 216 SKEWLKQPIFIQSFAPTSL 234
                     I SF P  +
Sbjct: 134 ----------IMSFDPRVV 142

This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity with Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Length = 237

>gnl|CDD|176551 cd08609, GDPD_GDE3, Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE3 and similar proteins

 Score = 55.3 bits (133), Expect = 1e-08
 Identities = 35/105 (33%), Positives = 48/105 (45%), Gaps = 13/105 (12%)

Query: 43  RPYNLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIA 102
           +P  + HRG+    PE T  +  +++E G    ETD++ SKDGV    HD  L  TTN+ 
Sbjct: 26  KPALVGHRGAPMLAPENTLMSLRKSLECGVVVFETDVMVSKDGVPFLMHDEGLLRTTNVK 85

Query: 103 DHKEFADRKRTCMVQGVNTTGFFVVDFTLEELKTLRAKQRYSFRD 147
           D   F  R          +      +FT  ELKTL A   +  R 
Sbjct: 86  D--VFPGR------DAAGSN-----NFTWTELKTLNAGSWFLERR 117

This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE3 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 2 (GDPD2), Osteoblast differentiation promoting factor) and their metazoan homologs. Mammalian GDE3 is a transmembrane protein specifically expressed in bone tissues and spleen. It is a mammalian homolog of bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyzes the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Mammalian GDE3 has been characterized as glycerophosphoinositol inositolphosphodiesterase (EC 3.1.4.43) that selectively hydrolyzes extracellular glycerophosphoinositol (GPI) to generate inositol 1-phosphate (Ins1P) and glycerol. Mammalian GDE3 functions as an inducer of osteoblast differentiation. It also plays a critical role for actin cytoskeletal modulation. The catalytic activity of GDPD domain is essential for mammalian GDE3 cellular function. Length = 315

>gnl|CDD|176498 cd08555, PI-PLCc_GDPD_SF, Catalytic domain of phosphoinositide-specific phospholipase C-like phosphodiesterases superfamily

 Score = 52.8 bits (127), Expect = 2e-08
 Identities = 22/54 (40%), Positives = 32/54 (59%)

Query: 46 NLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTT 99
           L+HRG +    E T  A+ RA++ GA  +E D+  +KDG L+ +H   LD TT
Sbjct: 1  VLSHRGYSQNGQENTLEAFYRALDAGARGLELDVRLTKDGELVVYHGPTLDRTT 54

The PI-PLC-like phosphodiesterases superfamily represents the catalytic domains of bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13), eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11), glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria, as well as their uncharacterized homologs found in organisms ranging from bacteria and archaea to metazoans, plants, and fungi. PI-PLCs are ubiquitous enzymes hydrolyzing the membrane lipid phosphoinositides to yield two important second messengers, inositol phosphates and diacylglycerol (DAG). GP-GDEs play essential roles in glycerol metabolism and catalyze the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcohols that are major sources of carbon and phosphate. Both, PI-PLCs and GP-GDEs, can hydrolyze the 3'-5' phosphodiester bonds in different substrates, and utilize a similar mechanism of general base and acid catalysis with conserved histidine residues, which consists of two steps, a phosphotransfer and a phosphodiesterase reaction. This superfamily also includes Neurospora crassa ankyrin repeat protein NUC-2 and its Saccharomyces cerevisiae counterpart, Phosphate system positive regulatory protein PHO81, glycerophosphodiester phosphodiesterase (GP-GDE)-like protein SHV3 and SHV3-like proteins (SVLs). The residues essential for enzyme activities and metal binding are not conserved in these sequence homologs, which might suggest that the function of catalytic domains in these proteins might be distinct from those in typical PLC-like phosphodiesterases. Length = 179

>gnl|CDD|176552 cd08610, GDPD_GDE6, Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE6 and similar proteins

 Score = 52.6 bits (126), Expect = 7e-08
 Identities = 26/61 (42%), Positives = 35/61 (57%)

Query: 43  RPYNLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIA 102
           +P  + HRG+    PE T  ++ +AIE GA  +ETD+  S DGV    HD  L  TTNI 
Sbjct: 22  KPTIIGHRGAPMLAPENTMMSFEKAIEHGAHGLETDVTLSYDGVPFLMHDFTLKRTTNIG 81

Query: 103 D 103
           +
Sbjct: 82  E 82

This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE6 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 4 (GDPD4)) and their metazoan homologs. Mammalian GDE6 is a transmembrane protein predominantly expressed in the spermatocytes of testis. Although the specific physiological function of mammalian GDE6 has not been elucidated, its different pattern of tissue distribution suggests it might play a critical role in the completion of meiosis during male germ cell differentiation. Length = 316

>gnl|CDD|176522 cd08580, GDPD_Rv2277c_like, Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial protein Rv2277c and similar proteins

 Score = 52.3 bits (126), Expect = 8e-08
 Identities = 38/145 (26%), Positives = 54/145 (37%), Gaps = 35/145 (24%)

Query: 44  PYNLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIAD 103
           P  +AHRG   + PE T  A  +A+  GAD I   +  SKDGV + +    L   T    
Sbjct: 1   PLIVAHRGGTADAPENTLLAISKALANGADAIWLTVQLSKDGVPVLYRPSDLKSLT---- 56

Query: 104 HKEFADRKRTCMVQGVNTTGFFVVDFTLEELKTLRA------KQRYSFRDQQYNGKFPII 157
                           N +G  V  +T  +L TL A      +  Y +R +       I 
Sbjct: 57  ----------------NGSG-AVSAYTAAQLATLNAGYNFKPEGGYPYRGKPV----GIP 95

Query: 158 TFEEYISIALDAQRVVGIYPEMKNP 182
           T E+     L A        +MK+ 
Sbjct: 96  TLEQ----VLRAFPDTPFILDMKSL 116

This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial protein Rv2277c and similar proteins. Members in this subfamily are bacterial homologous of mammalian GDE4, a transmembrane protein whose cellular function has not yet been elucidated. Length = 263

>gnl|CDD|176507 cd08564, GDPD_GsGDE_like, Glycerophosphodiester phosphodiesterase domain of putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase and similar proteins

 Score = 47.9 bits (114), Expect = 3e-06
 Identities = 57/271 (21%), Positives = 105/271 (38%), Gaps = 56/271 (20%)

Query: 41  TSRPYNLAHRG--SNGEFPEETAAAYMRAIEEGADFIETDILASKDG-VLICHHDVFLDD 97
             RP  + HRG   +  +PE T  ++ RA+E G D +E D+  +KD  +++ H     +D
Sbjct: 1   MVRPIIVGHRGAGCSTLYPENTLPSFRRALEIGVDGVELDVFLTKDNEIVVFHG---TED 57

Query: 98  TTNIADHKEFADRKRTCMVQGVNTTGFFVVDFTLEELKTLRAKQRYSFRDQQYNGKFPII 157
            TN     +  D       + +N       D +L+E+  L  KQ +   D++  G    I
Sbjct: 58  DTNPDTSIQLDD----SGFKNIN-------DLSLDEITRLHFKQLF---DEKPCGAD-EI 102

Query: 158 TFEEYISIALDAQRVVGIYPEMKNPVFINQHVKWADGKKFED--KFVDTLKKYG--YKGA 213
             E    I      +V      K+ +  N  +K   G++     + ++ ++KYG   +  
Sbjct: 103 KGE---KIPTLEDVLV----TFKDKLKYNIELK---GREVGLGERVLNLVEKYGMILQVH 152

Query: 214 YMSKEWLKQPIFIQSFAPTSLVYISNKTDSPKIFLIDDV------DILTED-------TN 260
           + S     +   ++           NK + P   L ++V      D L +         N
Sbjct: 153 FSSFLHYDRLDLLK-------ALRPNKLNVPIALLFNEVKSPSPLDFLEQAKYYNATWVN 205

Query: 261 QSYSEITSDAYLNYIKEYCVGIGPWKDTVVP 291
            SY   T + ++    E  + +  + D  V 
Sbjct: 206 FSYDFWTEE-FVKKAHENGLKVMTYFDEPVN 235

This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase (GsGDE, EC 3.1.4.46) and its uncharacterized eukaryotic homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Length = 265

>gnl|CDD|176549 cd08607, GDPD_GDE5, Glycerophosphodiester phosphodiesterase domain of putative mammalian glycerophosphodiester phosphodiesterase GDE5 and similar proteins

 Score = 46.5 bits (111), Expect = 7e-06
 Identities = 27/101 (26%), Positives = 43/101 (42%), Gaps = 18/101 (17%)

Query: 49  HRGSNGEF-------PEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNI 101
           HRG+   +        E T A++++A E GAD +E D+  +KD V + +HD     T  +
Sbjct: 5   HRGAGNSYTAASAVVRENTIASFLQAAEHGADMVEFDVQLTKDLVPVVYHDF----TLRV 60

Query: 102 ADHKEFADRKRTCMVQGVNTTGFFVVDFTLEELKTLRAKQR 142
           +        K        +     V D T E+LK L+    
Sbjct: 61  SL-------KSKGDSDRDDLLEVPVKDLTYEQLKLLKLFHI 94

This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative mammalian GDE5 and similar proteins. Mammalian GDE5 is widely expressed in mammalian tissues, with highest expression in the spinal chord. Although its biological function remains unclear, mammalian GDE5 shows higher sequence homology to fungal and plant glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46) than to other bacterial and mammalian GP-GDEs. It may also hydrolyze glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. In addition to C-terminal GDPD domain, all members in this subfamily have a starch binding domain (CBM20) in the N-terminus, which suggests these proteins may play a distinct role in glycerol metabolism. Length = 290

>gnl|CDD|176550 cd08608, GDPD_GDE2, Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE2 and similar proteins

 Score = 44.8 bits (106), Expect = 3e-05
 Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 2/71 (2%)

Query: 43  RPYNLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIA 102
           +P  + HRG+    PE T  ++ +A+E+    ++ D+  S DGV    HD  L  TTN+ 
Sbjct: 1   KPAIIGHRGAPMLAPENTLMSFQKALEQKVYGLQADVTISLDGVPFLMHDRTLRRTTNV- 59

Query: 103 DHKEFADRKRT 113
             + F +R+  
Sbjct: 60  -DRVFPERQYE 69

This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE2 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 5 (GDPD5)) and their metazoan homologs. Mammalian GDE2 is transmembrane protein primarily expressed in mature neurons. It is a mammalian homolog of bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Mammalian GDE2 selectively hydrolyzes glycerophosphocholine (GPC) and has been characterized as GPC-GDE (EC 3.1.4.2) that contributes to osmotic regulation of cellular GPC. Mammalian GDE2 functions in a complex with an antioxidant scavenger peroxiredoxin1 (Prdx1) to control motor neuron differentiation in the spinal cord. Mammalian GDE2 also plays a critical role for retinoid-induced neuronal outgrowth. The catalytic activity of GDPD domain is essential for mammalian GDE2 cellular function. Length = 351

>gnl|CDD|176514 cd08572, GDPD_GDE5_like, Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE5-like proteins

 Score = 43.8 bits (104), Expect = 6e-05
 Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 19/98 (19%)

Query: 49  HRG--------SNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTN 100
           HRG        S     E T A+++ A + GAD +E D+  +KDGV + +HD        
Sbjct: 5   HRGLGKNYASGSLAGIRENTIASFLAAAKHGADMVEFDVQLTKDGVPVIYHD-------- 56

Query: 101 IADHKEFADRKRTCMVQGVNTTGFFVVDFTLEELKTLR 138
                  +++ +T   +G       + D TLE+LK L 
Sbjct: 57  --FTISVSEKSKTGSDEGELIE-VPIHDLTLEQLKELG 91

This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian glycerophosphodiester phosphodiesterase GDE5-like proteins. GDE5 is widely expressed in mammalian tissues, with highest expression in spinal chord. Although its biological function remains unclear, mammalian GDE5 shows higher sequence homology to fungal and plant glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46) than to other bacterial and mammalian GP-GDEs. It may also hydrolyze glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Length = 293

>gnl|CDD|236524 PRK09454, ugpQ, cytoplasmic glycerophosphodiester phosphodiesterase; Provisional

 Score = 43.4 bits (103), Expect = 7e-05
 Identities = 24/61 (39%), Positives = 30/61 (49%), Gaps = 8/61 (13%)

Query: 44  PYNLAHRGSNGEFPEETAAAYMRAIEEGADF----IETDILASKDGVLICHHDVFLDDTT 99
           P  +AHRG     PE T AA    I+ GA +    IE D   S DG +   HD  L+ T+
Sbjct: 8   PRIVAHRGGGKLAPENTLAA----IDVGARYGHRMIEFDAKLSADGEIFLLHDDTLERTS 63

Query: 100 N 100
           N
Sbjct: 64  N 64

Length = 249

>gnl|CDD|176554 cd08613, GDPD_GDE4_like_1, Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial homologs of mammalian glycerophosphodiester phosphodiesterase GDE4

 Score = 43.5 bits (103), Expect = 7e-05
 Identities = 35/117 (29%), Positives = 43/117 (36%), Gaps = 43/117 (36%)

Query: 43  RPYNLAHRGSNGEFPEE-------TAA--------------AYMR-AIEEGADFIETDIL 80
           +P  LAHRG    F  E       TA               A M+ A + GAD +E D+ 
Sbjct: 23  KPKLLAHRGLAQTFDREGVENDTCTAERIDPPTHDYLENTIASMQAAFDAGADVVELDVH 82

Query: 81  ASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVNTTGFFVVDFTLEELKTL 137
            +KDG     HD  LD  T+                 GV        D T+ ELKTL
Sbjct: 83  PTKDGEFAVFHDWTLDCRTDG---------------SGV------TRDHTMAELKTL 118

This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial homologs of mammalian GDE4, a transmembrane protein whose cellular function has not been elucidated yet. Length = 309

>gnl|CDD|176499 cd08556, GDPD, Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins

 Score = 38.4 bits (90), Expect = 0.002
 Identities = 29/160 (18%), Positives = 49/160 (30%), Gaps = 43/160 (26%)

Query: 156 IITFEEYISIALDAQRVVGIYPEMKNPVFINQHVKWADGKKFEDKFVDTLKKYGYKGAYM 215
           I T EE + +       VG+  E+K P               E K  + L++YG      
Sbjct: 48  IPTLEEVLELVKGG---VGLNIELKEP---------TRYPGLEAKVAELLREYG------ 89

Query: 216 SKEWLKQPIFIQSFAPTSLVYISNKTDSPKIFLIDDVDILTEDTNQSYSEITSDAYLNYI 275
               L++ + + SF   +L  +          L      L +              L   
Sbjct: 90  ----LEERVVVSSFDHEALRALKELDPEVPTGL------LVDKPPLDPLLAELARALG-- 137

Query: 276 KEYCVGIGPWKDTVVPVANNYSQTPTDLVARAHALDLQIH 315
                 + P    + P          +LV  AHA  L+++
Sbjct: 138 ---ADAVNPHYKLLTP----------ELVRAAHAAGLKVY 164

The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcohols are major sources of carbon and phosphate. Its catalytic mechanism is based on the metal ion-dependent acid-base reaction, which is similar to that of phosphoinositide-specific phospholipases C (PI-PLCs, EC 3.1.4.11). Both, GDPD related proteins and PI-PLCs, belong to the superfamily of PI-PLC-like phosphodiesterases. Length = 189

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	322
cd08603	299	GDPD_SHV3_repeat_1 Glycerophosphodiester phosphodi	100.0
cd08602	309	GDPD_ScGlpQ1_like Glycerophosphodiester phosphodie	100.0
cd08571	302	GDPD_SHV3_plant Glycerophosphodiester phosphodiest	100.0
cd08560	356	GDPD_EcGlpQ_like_1 Glycerophosphodiester phosphodi	100.0
PRK11143	355	glpQ glycerophosphodiester phosphodiesterase; Prov	100.0
cd08604	300	GDPD_SHV3_repeat_2 Glycerophosphodiester phosphodi	100.0
cd08600	318	GDPD_EcGlpQ_like Glycerophosphodiester phosphodies	100.0
cd08559	296	GDPD_periplasmic_GlpQ_like Periplasmic glycerophos	100.0
cd08574	252	GDPD_GDE_2_3_6 Glycerophosphodiester phosphodieste	100.0
cd08580	263	GDPD_Rv2277c_like Glycerophosphodiester phosphodie	100.0
cd08601	256	GDPD_SaGlpQ_like Glycerophosphodiester phosphodies	100.0
PRK09454	249	ugpQ cytoplasmic glycerophosphodiester phosphodies	100.0
cd08573	258	GDPD_GDE1 Glycerophosphodiester phosphodiesterase	100.0
cd08562	229	GDPD_EcUgpQ_like Glycerophosphodiester phosphodies	100.0
cd08612	300	GDPD_GDE4 Glycerophosphodiester phosphodiesterase	100.0
cd08581	229	GDPD_like_1 Glycerophosphodiester phosphodiesteras	100.0
cd08568	226	GDPD_TmGDE_like Glycerophosphodiester phosphodiest	100.0
cd08610	316	GDPD_GDE6 Glycerophosphodiester phosphodiesterase	100.0
cd08609	315	GDPD_GDE3 Glycerophosphodiester phosphodiesterase	100.0
cd08563	230	GDPD_TtGDE_like Glycerophosphodiester phosphodiest	100.0
cd08608	351	GDPD_GDE2 Glycerophosphodiester phosphodiesterase	100.0
cd08582	233	GDPD_like_2 Glycerophosphodiester phosphodiesteras	100.0
cd08579	220	GDPD_memb_like Glycerophosphodiester phosphodieste	100.0
cd08565	235	GDPD_pAtGDE_like Glycerophosphodiester phosphodies	100.0
cd08575	264	GDPD_GDE4_like Glycerophosphodiester phosphodieste	100.0
cd08567	263	GDPD_SpGDE_like Glycerophosphodiester phosphodiest	100.0
cd08585	237	GDPD_like_3 Glycerophosphodiester phosphodiesteras	100.0
cd08607	290	GDPD_GDE5 Glycerophosphodiester phosphodiesterase	100.0
cd08572	293	GDPD_GDE5_like Glycerophosphodiester phosphodieste	100.0
cd08570	234	GDPD_YPL206cp_fungi Glycerophosphodiester phosphod	100.0
cd08564	265	GDPD_GsGDE_like Glycerophosphodiester phosphodiest	100.0
cd08561	249	GDPD_cytoplasmic_ScUgpQ2_like Glycerophosphodieste	100.0
cd08606	286	GDPD_YPL110cp_fungi Glycerophosphodiester phosphod	100.0
cd08605	282	GDPD_GDE5_like_1_plant Glycerophosphodiester phosp	100.0
cd08566	240	GDPD_AtGDE_like Glycerophosphodiester phosphodiest	100.0
cd08583	237	PI-PLCc_GDPD_SF_unchar1 Uncharacterized hypothetic	100.0
cd08613	309	GDPD_GDE4_like_1 Glycerophosphodiester phosphodies	100.0
COG0584	257	UgpQ Glycerophosphoryl diester phosphodiesterase [	100.0
PF03009	256	GDPD: Glycerophosphoryl diester phosphodiesterase	100.0
cd08556	189	GDPD Glycerophosphodiester phosphodiesterase domai	100.0
cd08555	179	PI-PLCc_GDPD_SF Catalytic domain of phosphoinositi	99.97
cd08578	300	GDPD_NUC-2_fungi Putative glycerophosphodiester ph	99.95
KOG2258	341	consensus Glycerophosphoryl diester phosphodiester	99.92
cd08584	192	PI-PLCc_GDPD_SF_unchar2 Uncharacterized hypothetic	99.88
cd08577	228	PI-PLCc_GDPD_SF_unchar3 Uncharacterized hypothetic	99.27
cd08592	229	PI-PLCc_gamma Catalytic domain of metazoan phospho	98.67
cd08576	265	GDPD_like_SMaseD_PLD Glycerophosphodiester phospho	98.6
cd08627	229	PI-PLCc_gamma1 Catalytic domain of metazoan phosph	98.57
KOG2421	417	consensus Predicted starch-binding protein [Genera	98.05
smart00148	135	PLCXc Phospholipase C, catalytic domain (part); do	97.94
cd08597	260	PI-PLCc_PRIP_metazoa Catalytic domain of metazoan	97.87
cd08594	227	PI-PLCc_eta Catalytic domain of metazoan phosphoin	97.39
cd08633	254	PI-PLCc_eta2 Catalytic domain of metazoan phosphoi	97.29
cd08596	254	PI-PLCc_epsilon Catalytic domain of metazoan phosp	97.26
cd08631	258	PI-PLCc_delta4 Catalytic domain of metazoan phosph	97.25
cd08632	253	PI-PLCc_eta1 Catalytic domain of metazoan phosphoi	97.22
cd08595	257	PI-PLCc_zeta Catalytic domain of metazoan phosphoi	97.2
cd08593	257	PI-PLCc_delta Catalytic domain of metazoan phospho	97.13
cd08626	257	PI-PLCc_beta4 Catalytic domain of metazoan phospho	97.09
PF10223	244	DUF2181: Uncharacterized conserved protein (DUF218	96.8
cd08630	258	PI-PLCc_delta3 Catalytic domain of metazoan phosph	96.66
cd08558	226	PI-PLCc_eukaryota Catalytic domain of eukaryotic p	96.64
cd08599	228	PI-PLCc_plant Catalytic domain of plant phosphatid	96.62
cd08628	254	PI-PLCc_gamma2 Catalytic domain of metazoan phosph	96.6
cd08629	258	PI-PLCc_delta1 Catalytic domain of metazoan phosph	96.59
cd08598	231	PI-PLC1c_yeast Catalytic domain of putative yeast	96.47
cd08623	258	PI-PLCc_beta1 Catalytic domain of metazoan phospho	96.33
cd08624	261	PI-PLCc_beta2 Catalytic domain of metazoan phospho	96.3
cd08591	257	PI-PLCc_beta Catalytic domain of metazoan phosphoi	96.13
cd08625	258	PI-PLCc_beta3 Catalytic domain of metazoan phospho	95.99
PLN02230	598	phosphoinositide phospholipase C 4	95.7
PLN02952	599	phosphoinositide phospholipase C	94.78
KOG1264	1267	consensus Phospholipase C [Lipid transport and met	94.64
PLN02222	581	phosphoinositide phospholipase C 2	94.0
KOG0169	746	consensus Phosphoinositide-specific phospholipase	93.63
PLN02228	567	Phosphoinositide phospholipase C	93.16
PLN02223	537	phosphoinositide phospholipase C	90.98
cd00137	274	PI-PLCc Catalytic domain of prokaryotic and eukary	90.19
PF08139	25	LPAM_1: Prokaryotic membrane lipoprotein lipid att	89.05
PF00388	146	PI-PLC-X: Phosphatidylinositol-specific phospholip	87.26
cd08589	324	PI-PLCc_SaPLC1_like Catalytic domain of Streptomyc	82.03

>cd08603 GDPD_SHV3_repeat_1 Glycerophosphodiester phosphodiesterase domain repeat 1 of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins

Probab=100.00  E-value=3.1e-52  Score=379.87  Aligned_cols=251  Identities=31%  Similarity=0.475  Sum_probs=218.6

Q ss_pred             CeEEeeCCCCCCCchhHHHHHHHHHHcCC--CEEEeeeeEcCCCeEEEEeCCCCccccCCCCcccccccccccccCCccc
Q 020686           44 PYNLAHRGSNGEFPEETAAAYMRAIEEGA--DFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVNT  121 (322)
Q Consensus        44 p~iiaHRG~~~~~pENT~~Af~~A~~~G~--d~iE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~~~~~g~~~  121 (322)
                      |+||||||++|.+||||++||+.|+++|+  ++||||||+||||++||+||.+|.|+|++..  .|+.|++++.++|+..
T Consensus         1 plVIAHRGasg~~PEnTl~Ay~~Ai~~Ga~~d~IE~DV~lTkDgvlVv~HD~~L~rtT~v~~--~F~~r~~t~~idG~~~   78 (299)
T cd08603           1 PLVIARGGFSGLFPDSSLFAYQFAASSSSPDVALWCDLQLTKDGVGICLPDLNLDNSTTIAR--VYPKRKKTYSVNGVST   78 (299)
T ss_pred             CeEEecCCCCCCCCcchHHHHHHHHHcCCCCCEEEEEeeECcCCcEEEeCCccccccCCCcc--cccccccccccccccc
Confidence            78999999999999999999999999998  4799999999999999999999999999986  5999999999999999


Q ss_pred             ccceeeccCHHHHccCcccccccCCCcccCCCccccCHHHHHHHHHhcCCcceEeeeeCCcccccccccccCcchHHHHH
Q 020686          122 TGFFVVDFTLEELKTLRAKQRYSFRDQQYNGKFPIITFEEYISIALDAQRVVGIYPEMKNPVFINQHVKWADGKKFEDKF  201 (322)
Q Consensus       122 ~g~~i~~~t~~el~~l~~~~~~~~r~~~~~~~~~iptL~e~l~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~~~~~v  201 (322)
                      +||.+.++||+||++|++.....+|++.+.+.++||||+|+|+.++.    .++.+|+|.+.++..     .+..+++.|
T Consensus        79 ~g~~~~d~TlaELk~L~~~~~~~~r~~~~~g~~~IpTLeEvl~~~~~----~gi~i~ie~~~~~~~-----~gl~~~~~l  149 (299)
T cd08603          79 KGWFSVDFTLAELQQVTLIQGIFSRTPIFDGQYPISTVEDVVTLAKP----EGLWLNVQHDAFYQQ-----HNLSMSSYL  149 (299)
T ss_pred             CCceeccCCHHHHhhCCCCCCcccCCcccCCcCCCCCHHHHHHHhHh----cCeEEEEecHHHHHH-----cCCCHHHHH
Confidence            99999999999999999987766788888887799999999999864    567888888887754     567899999


Q ss_pred             HHHHHHcCCCCccccccccCCCEEEeccChhHHHHHhhc---CCCCeEE-EEeccCccCCCCcccccccccHHHHHHHHh
Q 020686          202 VDTLKKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNK---TDSPKIF-LIDDVDILTEDTNQSYSEITSDAYLNYIKE  277 (322)
Q Consensus       202 ~~~l~~~~~~~~~~~~~~~~~rv~i~Sf~~~~l~~~~~~---~~~~~v~-l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  277 (322)
                      +++|+++|             .++||||+...|+++++.   ...+.++ |++.... ....+..|..+.+  .++++++
T Consensus       150 ~~~L~~~~-------------~v~iQSfe~~~L~~l~~~~~~~~~~Lv~~l~~~~~~-~~~~~~~y~~~~~--~L~eIa~  213 (299)
T cd08603         150 LSLSKTVK-------------VDYISSPEVGFLKSIGGRVGRNGTKLVFRFLDKDDV-EPSTNQTYGSILK--NLTFIKT  213 (299)
T ss_pred             HHHHHHcC-------------cEEEECCCHHHHHHHHHhcccCCCCeeeEeccCCCc-CCCCCccHHHHHH--hHHHHHH
Confidence            99999986             489999999999999975   3556775 6655332 2334567887776  6999999


Q ss_pred             hccccCCCcceeeec-CCCCCCCChHHHHHHHHcCCeEEEEeCCC
Q 020686          278 YCVGIGPWKDTVVPV-ANNYSQTPTDLVARAHALDLQIHIGNTTT  321 (322)
Q Consensus       278 ~~~~i~~~~~~~~~~-~~~~~~~~~~~v~~ah~~Gl~V~vWTvn~  321 (322)
                      ||++++||+..++|. +..+......+|+.||++||.||+||+++
T Consensus       214 yAdgig~~k~~i~p~~~~~~~~~~t~lV~~Ah~agL~Vh~~tfr~  258 (299)
T cd08603         214 FASGILVPKSYIWPVDSDQYLQPATSLVQDAHKAGLEVYASGFAN  258 (299)
T ss_pred             HHhhcCCChhheeecCCCCcccCccHHHHHHHHcCCeEEEEEeeC
Confidence            999999999999987 34556667899999999999999999975

This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) repeat 1 present in glycerophosphodiester phosphodiesterase (GP-GDE)-like protein SHV3 and SHV3-like proteins (SVLs), which may play an important role in cell wall organization. The prototype of this family is a glycosylphosphatidylinositol (GPI) anchored protein SHV3 encoded by shaven3 (shv3) gene from Arabidopsis thaliana. Members in this family show sequence homology to bacterial GP-GDEs (EC 3.1.4.46) that catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Both, SHV3 and SVLs, have two tandemly repeated GDPD domains whose biochemical functions remain unclear. The residues essential for interactions with the substrates and calcium ions in bacterial GP

>cd08602 GDPD_ScGlpQ1_like Glycerophosphodiester phosphodiesterase domain of Streptomycin coelicolor (GlpQ1) and similar proteins

Probab=100.00  E-value=3.1e-50  Score=373.22  Aligned_cols=267  Identities=56%  Similarity=0.900  Sum_probs=219.0

Q ss_pred             CeEEeeCCCCCCCchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCCccccCCCCcccccccccccccCCccccc
Q 020686           44 PYNLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVNTTG  123 (322)
Q Consensus        44 p~iiaHRG~~~~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~~~~~g~~~~g  123 (322)
                      |+||||||+++.+||||++||++|++.|+|+||||||+||||++||+||.+|+|+|++...+.|++|++++.++|....|
T Consensus         1 p~iiAHRG~~~~~PENTl~Af~~A~~~Gad~iE~DVqlTkDg~lVv~HD~~l~rtt~~~~~~~~~~r~~~~~i~~~~~~~   80 (309)
T cd08602           1 PLVIAHRGASGYRPEHTLAAYQLAIEQGADFIEPDLVSTKDGVLICRHEPELSGTTDVADHPEFADRKTTKTVDGVNVTG   80 (309)
T ss_pred             CeEEecCCCCCCCCccHHHHHHHHHHcCCCEEEEeeeECCCCcEEEeCCCccccccCccccccccccccccccCCcccCC
Confidence            68999999999999999999999999999999999999999999999999999999998888899999888888888788


Q ss_pred             ceeeccCHHHHccCcccccccCCCcccCCCccccCHHHHHHHHHhcC----CcceEeeeeCCcccccccccccCcchHHH
Q 020686          124 FFVVDFTLEELKTLRAKQRYSFRDQQYNGKFPIITFEEYISIALDAQ----RVVGIYPEMKNPVFINQHVKWADGKKFED  199 (322)
Q Consensus       124 ~~i~~~t~~el~~l~~~~~~~~r~~~~~~~~~iptL~e~l~~~~~~~----~~~~l~iEiK~~~~~~~~~~~~~~~~~~~  199 (322)
                      +.|.++|++||++|+++.+++.+++.+.+..++|||+|+|+.++..+    +.++++||||.+.....    +.+..+++
T Consensus        81 ~~v~d~t~~eL~~l~~~~~~~~~~~~~~~~~~iptL~Evl~~~~~~~~~~~~~~~l~iEiK~~~~~~~----~~~~~~~~  156 (309)
T cd08602          81 WFTEDFTLAELKTLRARQRLPYRDQSYDGQFPIPTFEEIIALAKAASAATGRTVGIYPEIKHPTYFNA----PLGLPMED  156 (309)
T ss_pred             eeeccCCHHHHhhCccCCcCcccCcccCCCcCcCCHHHHHHHHHhhhhcccccceeEEeecCchhccc----ccCCCHHH
Confidence            78999999999999999887666666666669999999999997542    25899999997654221    13457899


Q ss_pred             HHHHHHHHcCCCCccccccccCCCEEEeccChhHHHHHhhcCCCCeEEEEeccCccCCC----CcccccccccHHHHHHH
Q 020686          200 KFVDTLKKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTDSPKIFLIDDVDILTED----TNQSYSEITSDAYLNYI  275 (322)
Q Consensus       200 ~v~~~l~~~~~~~~~~~~~~~~~rv~i~Sf~~~~l~~~~~~~~~~~v~l~~~~~~~~~~----~~~~~~~~~~~~~l~~~  275 (322)
                      +++++++++++.+.       .++++|||||.++|+++|++...+.++|++.......+    .+..|..+.....++.+
T Consensus       157 ~v~~~l~~~~~~~~-------~~~v~i~SFd~~~L~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (309)
T cd08602         157 KLLETLKKYGYTGK-------KAPVFIQSFEVTNLKYLRNKTDLPLVQLIDDATIPPQDTPEGDSRTYADLTTDAGLKEI  229 (309)
T ss_pred             HHHHHHHHcCCCCC-------CCCEEEECCCHHHHHHHHhhhCCCeEEEecCCCCCcccccccCccchhhhcCHHHHHHH
Confidence            99999999987531       14899999999999999998766777777543211111    12345444455567777


Q ss_pred             HhhccccCCCcceeeec-CCCCCCCChHHHHHHHHcCCeEEEEeCCC
Q 020686          276 KEYCVGIGPWKDTVVPV-ANNYSQTPTDLVARAHALDLQIHIGNTTT  321 (322)
Q Consensus       276 ~~~~~~i~~~~~~~~~~-~~~~~~~~~~~v~~ah~~Gl~V~vWTvn~  321 (322)
                      ..++.+++++...+.|. .......++++|+.+|++|++|++||||+
T Consensus       230 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~~a~~~gl~v~~wTvn~  276 (309)
T cd08602         230 ATYADGIGPWKDLIIPSDANGRLGTPTDLVEDAHAAGLQVHPYTFRN  276 (309)
T ss_pred             HhhceEEecchheEEecCCCCcccCccHHHHHHHHcCCEEEEEEecC
Confidence            78888999988777765 33456678899999999999999999997

This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of putative bacterial and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) similar to Escherichia coli periplasmic phosphodiesterase GlpQ, as well as plant glycerophosphodiester phosphodiesterases (GP-PDEs), all of which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. The prototypes of this family include putative secreted phosphodiesterase encoded by gene glpQ1 (SCO1565) from the pho regulon in Streptomyces coelicolor genome, and in plants, two distinct Arabidopsis thaliana genes, AT5G08030 and AT1G74210, coding putative GP-PDEs from the cell walls and vacuoles, respectively.

>cd08571 GDPD_SHV3_plant Glycerophosphodiester phosphodiesterase domain of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins

Probab=100.00  E-value=1.9e-49  Score=366.80  Aligned_cols=255  Identities=29%  Similarity=0.482  Sum_probs=203.4

Q ss_pred             CeEEeeCCCCCCCchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCCccccCCCCcccccccccccccCCccccc
Q 020686           44 PYNLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVNTTG  123 (322)
Q Consensus        44 p~iiaHRG~~~~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~~~~~g~~~~g  123 (322)
                      |+||||||+++.+||||++||++|+++|+|+||||||+||||++||+||.+|+|+||+..  .|+.|++++.++|...+|
T Consensus         1 p~iiaHRG~~~~~PENTl~Af~~A~~~Gad~IE~DV~lTkDg~lVv~HD~~l~rtt~~~~--~~~~~~~~~~~~~~~~~g   78 (302)
T cd08571           1 PLVIARGGASGDYPDSTDLAYQKAISDGADVLDCDVQLTKDGVPICLPSINLDNSTTIAS--VFPKRKKTYVVEGQSTSG   78 (302)
T ss_pred             CeEEeCCCcCCCCCcchHHHHHHHHHcCCCEEEeeeeEcCCCcEEEeCCchhcCCccccc--ccccccceecccCcccCC
Confidence            689999999999999999999999999999999999999999999999999999999985  688888889999988889


Q ss_pred             ceeeccCHHHHccCccccccc----CCCcccCCCccccCHHHHHHHHHhcCCcceEeeeeCCcccccccccccCcchHHH
Q 020686          124 FFVVDFTLEELKTLRAKQRYS----FRDQQYNGKFPIITFEEYISIALDAQRVVGIYPEMKNPVFINQHVKWADGKKFED  199 (322)
Q Consensus       124 ~~i~~~t~~el~~l~~~~~~~----~r~~~~~~~~~iptL~e~l~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~~~~  199 (322)
                      +.+.++|++||++|+++....    +|++.+.++++||||+|+|+.++.++ .++++||||.+.....   . .+..+++
T Consensus        79 ~~v~d~T~aeL~~l~~~~~~~~~~~~~~~~~~~~~~IptL~evl~~~~~~~-~~~l~iEiK~~~~~~~---~-~~~~~~~  153 (302)
T cd08571          79 IFSFDLTWAEIQTLKPIISNPFSVLFRNPRNDNAGKILTLEDFLTLAKPKS-LSGVWINVENAAFLAE---H-KGLLSVD  153 (302)
T ss_pred             eeeeeCCHHHHhhCcccccCcccccCCCcccCCCCCcCCHHHHHHhhhccC-CceEEEEccCchhhhh---h-ccccHHH
Confidence            789999999999999865433    35666777679999999999997543 3679999997643211   0 1246889


Q ss_pred             HHHHHHHHcCCCCccccccccCCCEEEeccChhHHHHHhhcC--CCCeEEEEeccCccCCCCcccccccccHHHHHHHHh
Q 020686          200 KFVDTLKKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKT--DSPKIFLIDDVDILTEDTNQSYSEITSDAYLNYIKE  277 (322)
Q Consensus       200 ~v~~~l~~~~~~~~~~~~~~~~~rv~i~Sf~~~~l~~~~~~~--~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  277 (322)
                      .++++++++++...       .++++||||++++|++++++.  |.....++.+...  .+        .....+..+..
T Consensus       154 ~v~~~l~~~~~~~~-------~~~v~i~SF~~~~L~~~~~~~~~p~v~~~~l~~~~~--~~--------~~~~~l~~~~~  216 (302)
T cd08571         154 AVLTSLSKAGYDQT-------AKKVYISSPDSSVLKSFKKRVGTKLVFRVLDVDDTE--PD--------TLLSNLTEIKK  216 (302)
T ss_pred             HHHHHHHHcCCCCC-------CCCEEEeCCCHHHHHHHHhccCCCceEEEeecCCCc--CC--------CChhHHHHHHH
Confidence            99999999998520       148999999999999999998  5544333322110  00        01234677777


Q ss_pred             hccccCCCcceeeec-CCCCCCCChHHHHHHHHcCCeEEEEeCCCC
Q 020686          278 YCVGIGPWKDTVVPV-ANNYSQTPTDLVARAHALDLQIHIGNTTTG  322 (322)
Q Consensus       278 ~~~~i~~~~~~~~~~-~~~~~~~~~~~v~~ah~~Gl~V~vWTvn~~  322 (322)
                      |+.+++++...+.|. ...+...++++|+.+|++|++|++||||++
T Consensus       217 ~a~~v~~~~~~~~~~~~~~~~~~~~~~V~~ah~~Gl~V~~wTvn~~  262 (302)
T cd08571         217 FASGVLVPKSYIWPVDSDSFLTPQTSVVQDAHKAGLEVYVSGFANE  262 (302)
T ss_pred             hcCccccChhHeeecCCCCcccCccHHHHHHHHcCCEEEEEEEecC
Confidence            888998877666653 123445567999999999999999999984

This subfamily corresponds to the glycerophosphodiester phosphodiesterase (GDPD) domain present in glycerophosphodiester phosphodiesterase (GP-GDE)-like protein SHV3 and SHV3-like proteins (SVLs), which may play an important role in cell wall organization. The prototype of this family is a glycosylphosphatidylinositol (GPI) anchored protein SHV3 encoded by shaven3 (shv3) gene from Arabidopsis thaliana. Members in this family show sequence homology to bacterial GP-GDEs (EC 3.1.4.46) that catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Both, SHV3 and SVLs, have two tandemly repeated GDPD domains whose biochemical functions remain unclear. The residues essential for interactions with the substrates and calcium ions in bacterial GP-GDEs are not conserv

>cd08560 GDPD_EcGlpQ_like_1 Glycerophosphodiester phosphodiesterase domain similar to Escherichia coli periplasmic phosphodiesterase (GlpQ) include uncharacterized proteins

Probab=100.00  E-value=6.2e-49  Score=368.54  Aligned_cols=262  Identities=24%  Similarity=0.315  Sum_probs=203.2

Q ss_pred             CCCeEEeeCCCCCCCchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCC-CCccccCCCCcccccccccccccCCcc
Q 020686           42 SRPYNLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDV-FLDDTTNIADHKEFADRKRTCMVQGVN  120 (322)
Q Consensus        42 ~~p~iiaHRG~~~~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~-~l~r~t~~~~~~~~~~~~~~~~~~g~~  120 (322)
                      +.+++|||||+++.+||||++||++|+++|||+||+||++||||++||+||. +|+||||+...|+|+.|++++..+|..
T Consensus        15 ~~~~iIAHRGasg~~PEnTl~Af~~Ai~~Gad~IE~DV~lTkDg~lVV~HD~~~L~rtTnv~~~pe~a~r~~~~~~~g~~   94 (356)
T cd08560          15 KTDFSIGHRGAPLQFPEHTRESYEAAARMGAGILECDVTFTKDRELVCRHSQCDLHTTTNILAIPELAAKCTQPFTPANA   94 (356)
T ss_pred             CCceEEEcCCCCCCCCcchHHHHHHHHHcCCCEEEEEeeEccCCcEEEECCCccccCccCCccccchhhhcccccccccc
Confidence            5789999999999999999999999999999999999999999999999996 899999999999999999988777765


Q ss_pred             ----cccceeeccCHHHHccCccccc-----------c-----cCCCcccCCCccccCHHHHHHHHHhcCCcceEeeeeC
Q 020686          121 ----TTGFFVVDFTLEELKTLRAKQR-----------Y-----SFRDQQYNGKFPIITFEEYISIALDAQRVVGIYPEMK  180 (322)
Q Consensus       121 ----~~g~~i~~~t~~el~~l~~~~~-----------~-----~~r~~~~~~~~~iptL~e~l~~~~~~~~~~~l~iEiK  180 (322)
                          .++|++.++|++||++|+.+..           +     .+|++.+.+..+||||+|+|++++..+  ++++||||
T Consensus        95 ~~~~~~~~~v~d~TlaELk~L~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~IPTL~Evl~lv~~~~--v~l~iEiK  172 (356)
T cd08560          95 TKPASAECCTSDITLAEFKSLCGKMDASNPSATTPEEYQNGTPDWRTDLYATCGTLMTHKESIALFKSLG--VKMTPELK  172 (356)
T ss_pred             ccccccCcchhhCcHHHHhcCCCccccccccccccccccccccccccccccCCCCCCCHHHHHHHHHhcC--ceEEEEeC
Confidence                4467899999999999987531           1     134445656679999999999998643  89999999


Q ss_pred             CcccccccccccCcchHHHHHHHHHHHcCCCCccccccccCCCEEEeccChhHHHHHhhcCCCC-e--EEEEeccCccCC
Q 020686          181 NPVFINQHVKWADGKKFEDKFVDTLKKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTDSP-K--IFLIDDVDILTE  257 (322)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~rv~i~Sf~~~~l~~~~~~~~~~-~--v~l~~~~~~~~~  257 (322)
                      .+..+...........+++.++++++++|+..         ++|+||||+++.|++++++.|.. .  +++.+...  ..
T Consensus       173 ~~~~~~~~~g~~~~~~~~~~l~~~l~~~g~~~---------~~v~iqSFd~~~L~~~~~~~p~~~~~l~~l~~~~~--~~  241 (356)
T cd08560         173 SPSVPMPFDGNYTQEDYAQQMIDEYKEAGVPP---------SRVWPQSFNLDDIFYWIKNEPDFGRQAVYLDDRDD--TA  241 (356)
T ss_pred             CCcccccccccccHHHHHHHHHHHHHHcCCCC---------CCEEEECCCHHHHHHHHHhCCCCCeeEEEEccCCc--cc
Confidence            87753321000012368999999999999863         48999999999999998876642 2  33333211  00


Q ss_pred             CCcccccccccHHHHHHH-HhhccccCCCcceeeecCCCCCCCChHHHHHHHHcCCeEEEEeCCC
Q 020686          258 DTNQSYSEITSDAYLNYI-KEYCVGIGPWKDTVVPVANNYSQTPTDLVARAHALDLQIHIGNTTT  321 (322)
Q Consensus       258 ~~~~~~~~~~~~~~l~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~ah~~Gl~V~vWTvn~  321 (322)
                      +.  .+..   ...++.+ ..++++++|+...+.+........++++|+.||++|++|++|||++
T Consensus       242 ~~--~~~~---~~~l~~i~a~~a~~i~P~~~~l~~~~~~~~~~~~~~v~~Ah~~GL~V~~WTvr~  301 (356)
T cd08560         242 DF--PATW---SPSMDELKARGVNIIAPPIWMLVDPDENGKIVPSEYAKAAKAAGLDIITWTLER  301 (356)
T ss_pred             cc--cccH---HHHHHHHHhCCccEecCchhhccccccccccCCHHHHHHHHHcCCEEEEEEeec
Confidence            00  1111   1345666 5678899998776665433344578999999999999999999963

This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and their hypothetical homologs. Members in this subfamily show high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.

>PRK11143 glpQ glycerophosphodiester phosphodiesterase; Provisional

Probab=100.00  E-value=9.2e-48  Score=361.79  Aligned_cols=278  Identities=33%  Similarity=0.544  Sum_probs=205.4

Q ss_pred             HHHHHHHHHhhcCCCCCCCCCCCcccCcCCCCCCCCeEEeeCCCCCCCchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEE
Q 020686            9 IPLLFLSLIAGCAARPLYPLPSKLDIHKQPLQTSRPYNLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLI   88 (322)
Q Consensus         9 ~~~~~~~l~~~c~~~~~~~~~~~~~~~~~~~~~~~p~iiaHRG~~~~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~V   88 (322)
                      +.++++.|++||++..              ....+|++|||||+++.+||||++||++|++.|+|+||||||+||||++|
T Consensus         6 ~~~~~~~~~~~~~~~~--------------~~~~~pliiAHRGas~~~PENTl~Af~~A~~~GaD~IE~DV~lTkDg~lV   71 (355)
T PRK11143          6 LALLLAALLAGSAAAA--------------ADSAEKIVIAHRGASGYLPEHTLPAKAMAYAQGADYLEQDLVMTKDDQLV   71 (355)
T ss_pred             HHHHHHHHHHHhhHhh--------------hcCCCcEEEECCCCCCCCCcchHHHHHHHHHcCCCEEEEeeeEccCCcEE
Confidence            4567788999999832              24678999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCCccccCCCCcccccccccccccCCcccccceeeccCHHHHccCcccccccC-----------CCcccCCCcccc
Q 020686           89 CHHDVFLDDTTNIADHKEFADRKRTCMVQGVNTTGFFVVDFTLEELKTLRAKQRYSF-----------RDQQYNGKFPII  157 (322)
Q Consensus        89 v~HD~~l~r~t~~~~~~~~~~~~~~~~~~g~~~~g~~i~~~t~~el~~l~~~~~~~~-----------r~~~~~~~~~ip  157 (322)
                      |+||.+++|+|++..  .|+.+.+.   .|    ++.|.++|++||++|+++.++..           +.+....+++||
T Consensus        72 v~HD~~l~rtT~~~~--~~~~~~~~---~g----~~~v~dlT~aEL~~ld~~~~f~~~~g~~~~~~~~~~~~~~~~~~IP  142 (355)
T PRK11143         72 VLHDHYLDRVTDVAE--RFPDRARK---DG----RYYAIDFTLDEIKSLKFTEGFDIENGKKVQVYPGRFPMGKSDFRVH  142 (355)
T ss_pred             EeCCchhcccCCccc--cccccccc---CC----ceeEeeCcHHHHhhCCCCCCcccccccccccccccccccCCCCccC
Confidence            999999999999764  45555432   12    34799999999999999876532           112223356999


Q ss_pred             CHHHHHHHHHhc----CCcceEeeeeCCcccccccccccCcchHHHHHHHHHHHcCCCCccccccccCCCEEEeccChhH
Q 020686          158 TFEEYISIALDA----QRVVGIYPEMKNPVFINQHVKWADGKKFEDKFVDTLKKYGYKGAYMSKEWLKQPIFIQSFAPTS  233 (322)
Q Consensus       158 tL~e~l~~~~~~----~~~~~l~iEiK~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~rv~i~Sf~~~~  233 (322)
                      ||+|+|+.++..    +..++++||||.+.....     .+..+++.++++++++|+...       .++|+|+||++++
T Consensus       143 TL~Evl~~~~~~~~~~~~~~~l~IEiK~~~~~~~-----~~~~~~~~v~~~l~~~g~~~~-------~~~v~i~SFd~~~  210 (355)
T PRK11143        143 TFEEEIEFIQGLNHSTGKNIGIYPEIKAPWFHHQ-----EGKDIAAKVLEVLKKYGYTGK-------DDKVYLQCFDANE  210 (355)
T ss_pred             CHHHHHHHHHHhhhhcCCCceeeEeccCcccccc-----cchhHHHHHHHHHHHhCCCCC-------CCCEEEeCCCHHH
Confidence            999999998753    235789999998643211     235689999999999997521       1489999999999


Q ss_pred             HHHHhh-cCCC-----CeEEEEeccCccC--------CCCcccccccccHHHHHHHHhhccccCCCcceeeec-CCCCCC
Q 020686          234 LVYISN-KTDS-----PKIFLIDDVDILT--------EDTNQSYSEITSDAYLNYIKEYCVGIGPWKDTVVPV-ANNYSQ  298 (322)
Q Consensus       234 l~~~~~-~~~~-----~~v~l~~~~~~~~--------~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~-~~~~~~  298 (322)
                      |+++|+ ..|.     +.++++.......        ......|.....+..+..+..++.++.|....+.+. +..+..
T Consensus       211 L~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~p~~~~l~~~~~~~~~~  290 (355)
T PRK11143        211 LKRIKNELEPKMGMDLKLVQLIAYTDWNETQEKQPDGKWVNYNYDWMFKPGAMKEVAKYADGIGPDYHMLVDETSTPGNI  290 (355)
T ss_pred             HHHHHhhcCccccCCcceEEEeccCCCcccccccccCcccccchhhhcChhhHHHHHhhceeecCChhheeeccccCCcc
Confidence            999997 5453     5567764221100        001111222222234556667788888875444332 234455


Q ss_pred             CChHHHHHHHHcCCeEEEEeCCC
Q 020686          299 TPTDLVARAHALDLQIHIGNTTT  321 (322)
Q Consensus       299 ~~~~~v~~ah~~Gl~V~vWTvn~  321 (322)
                      .++++|+.+|++|++|++||||+
T Consensus       291 ~~~~~v~~ah~~Gl~V~~WTVn~  313 (355)
T PRK11143        291 KLTGMVKEAHQAKLVVHPYTVRA  313 (355)
T ss_pred             ChHHHHHHHHHcCCEEEEEEecc
Confidence            67799999999999999999986

>cd08604 GDPD_SHV3_repeat_2 Glycerophosphodiester phosphodiesterase domain repeat 2 of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins

Probab=100.00  E-value=1.4e-47  Score=354.32  Aligned_cols=255  Identities=24%  Similarity=0.468  Sum_probs=196.5

Q ss_pred             CeEEeeCCCCCCCchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCCccccCCCCcccccccccccccCCccccc
Q 020686           44 PYNLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVNTTG  123 (322)
Q Consensus        44 p~iiaHRG~~~~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~~~~~g~~~~g  123 (322)
                      |.||||||+++.+||||++||++|++.|+|+||||||+||||++||+||.+|+|+|++.. +.|+.|++++ +++...+|
T Consensus         1 p~iiaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDG~lVv~HD~~l~rtt~~~~-~~~~~~~~~~-~~~~~~~~   78 (300)
T cd08604           1 PLIISHNGASGDYPGCTDLAYQKAVKDGADVIDCSVQMSKDGVPFCLDSINLINSTTVAT-SKFSNRATTV-PEIGSTSG   78 (300)
T ss_pred             CeEEecCCcCCCCCcchHHHHHHHHHcCCCEEEEeeeEcCCCCEEEeccccccCcccCCc-cccccccccc-ccccccCc
Confidence            689999999999999999999999999999999999999999999999999999999986 5788887764 34444667


Q ss_pred             ceeeccCHHHHccCccccccc------CCCcccCCCccccCHHHHHHHHHhcCCcceEeeeeCCcccccccccccCcchH
Q 020686          124 FFVVDFTLEELKTLRAKQRYS------FRDQQYNGKFPIITFEEYISIALDAQRVVGIYPEMKNPVFINQHVKWADGKKF  197 (322)
Q Consensus       124 ~~i~~~t~~el~~l~~~~~~~------~r~~~~~~~~~iptL~e~l~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~~  197 (322)
                      +.+.++|++||++|+++...+      +|.+.+.+..+||||+|+|+.++..+ .+++++|||.+......    .+..+
T Consensus        79 ~~v~d~t~~eL~~l~~~~~~~~~~~~~~~~~~~~~~~~iptL~Evl~~~~~~~-~~~l~iEiK~~~~~~~~----~~~~~  153 (300)
T cd08604          79 IFTFDLTWSEIQTLKPAISNPYSVTGLFRNPANKNAGKFLTLSDFLDLAKNKS-LSGVLINVENAAYLAEK----KGLDV  153 (300)
T ss_pred             eeeecCcHHHHhhCccCCcCcccccCcCCCcccCCCCCCCCHHHHHHHHHhcC-CceEEEEeeccchhhhc----cCccH
Confidence            789999999999999875322      24455666579999999999997643 24799999976432110    12358


Q ss_pred             HHHHHHHHHHcCCCCccccccccCCCEEEeccChhHHHHHhhcCCCCeEEEEeccCccCCCCcccccccccHHHHHHHHh
Q 020686          198 EDKFVDTLKKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTDSPKIFLIDDVDILTEDTNQSYSEITSDAYLNYIKE  277 (322)
Q Consensus       198 ~~~v~~~l~~~~~~~~~~~~~~~~~rv~i~Sf~~~~l~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  277 (322)
                      ++.++++++++++....      .++|+||||++++|++++++...+.++++.....   +    +    .+..++.+..
T Consensus       154 ~~~v~~~l~~~~~~~~~------~~~v~i~SF~~~~L~~~~~~~~~~~~~l~~~~~~---~----~----~~~~~~~~~~  216 (300)
T cd08604         154 VDAVLDALTNAGYDNQT------AQKVLIQSTDSSVLAAFKKQISYERVYVVDETIR---D----A----SDSSIEEIKK  216 (300)
T ss_pred             HHHHHHHHHHcCCCCCC------CCeEEEEcCCHHHHHHHHhccCCceEEEecCccc---c----c----ChhHHHHHHH
Confidence            99999999999985310      1389999999999999999885566666643210   0    0    1234566667


Q ss_pred             hccccCCCcceeeecCCCCCCCChHHHHHHHHcCCeEEEEeCCCC
Q 020686          278 YCVGIGPWKDTVVPVANNYSQTPTDLVARAHALDLQIHIGNTTTG  322 (322)
Q Consensus       278 ~~~~i~~~~~~~~~~~~~~~~~~~~~v~~ah~~Gl~V~vWTvn~~  322 (322)
                      ++.+++++...+.|....+...++++|+.+|++|++|++||||++
T Consensus       217 ~a~~v~~~~~~~~~~~~~~~~~~~~~v~~a~~~Gl~v~vwTvn~~  261 (300)
T cd08604         217 FADAVVIDRGSVFPVSTSFLTRQTNVVEKLQSANLTVYVEVLRNE  261 (300)
T ss_pred             hccEEEeChhhcccccCCcccCchHHHHHHHHCCCEEEEEEecCC
Confidence            787888776665543222222345999999999999999999974

This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) repeat 2 present in glycerophosphodiester phosphodiesterase (GP-GDE)-like protein SHV3 and SHV3-like proteins (SVLs), which may play important an role in cell wall organization. The prototype of this family is a glycosylphosphatidylinositol (GPI) anchored protein SHV3 encoded by shaven3 (shv3) gene from Arabidopsis thaliana. Members in this family show sequence homology to bacterial GP-GDEs (EC 3.1.4.46) that catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Both, SHV3 and SVLs, have two tandemly repeated GDPD domains whose biochemical functions remain unclear. The residues essential for interactions with the substrates and calcium ions in bacterial GP

>cd08600 GDPD_EcGlpQ_like Glycerophosphodiester phosphodiesterase domain of Escherichia coli (GlpQ) and similar proteins

Probab=100.00  E-value=2e-47  Score=355.79  Aligned_cols=258  Identities=35%  Similarity=0.591  Sum_probs=194.8

Q ss_pred             CeEEeeCCCCCCCchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCCccccCCCCcccccccccccccCCccccc
Q 020686           44 PYNLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVNTTG  123 (322)
Q Consensus        44 p~iiaHRG~~~~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~~~~~g~~~~g  123 (322)
                      |+||||||+++.+||||++||++|++.|+|+||||||+||||++||+||.+|+|+|++..  .|+.++++   +|    +
T Consensus         1 ~lviAHRG~s~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDg~lVv~HD~~l~rtt~~~~--~~~~~~~~---~g----~   71 (318)
T cd08600           1 KIIIAHRGASGYLPEHTLEAKALAYAQGADYLEQDVVLTKDDKLVVIHDHYLDNVTNVAE--KFPDRKRK---DG----R   71 (318)
T ss_pred             CeEEEcCCCCCCCCccHHHHHHHHHHcCCCEEEeeeeECcCCcEEEeCCchhhccCCccc--cccccccc---CC----c
Confidence            689999999999999999999999999999999999999999999999999999999874  45555432   12    2


Q ss_pred             ceeeccCHHHHccCcccccccCC-----------CcccCCCccccCHHHHHHHHHhc----CCcceEeeeeCCccccccc
Q 020686          124 FFVVDFTLEELKTLRAKQRYSFR-----------DQQYNGKFPIITFEEYISIALDA----QRVVGIYPEMKNPVFINQH  188 (322)
Q Consensus       124 ~~i~~~t~~el~~l~~~~~~~~r-----------~~~~~~~~~iptL~e~l~~~~~~----~~~~~l~iEiK~~~~~~~~  188 (322)
                      +.|.++|++||++|+++.+|..+           .+...+..+||||+|+|+.++..    +..++++||||.+..... 
T Consensus        72 ~~v~dlT~aEL~~ld~g~~f~~~~~~~~~~~~~~~~~~~~~~~IptL~evl~~~~~~~~~~~~~~~l~iEiK~~~~~~~-  150 (318)
T cd08600          72 YYVIDFTLDELKSLSVTERFDIENGKKVQVYPNRFPLWKSDFKIHTLEEEIELIQGLNKSTGKNVGIYPEIKAPWFHHQ-  150 (318)
T ss_pred             eeEeeCcHHHHhhCCCCCCcccccccccccccccCcccCCCCccCCHHHHHHHHHHhhhhcCCcceEEEeecCchhhhh-
Confidence            47999999999999999876422           11112346999999999998753    235889999997643211 


Q ss_pred             ccccCcchHHHHHHHHHHHcCCCCccccccccCCCEEEeccChhHHHHHhh-cCC-----CCeEEEEeccCccCC-----
Q 020686          189 VKWADGKKFEDKFVDTLKKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISN-KTD-----SPKIFLIDDVDILTE-----  257 (322)
Q Consensus       189 ~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~rv~i~Sf~~~~l~~~~~-~~~-----~~~v~l~~~~~~~~~-----  257 (322)
                          .+..+++.++++++++++.+.       ..+|+||||++++|+++|+ +.|     .+.++|+........     
T Consensus       151 ----~~~~~~~~v~~~l~~~~~~~~-------~~~v~i~SF~~~~L~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~~~  219 (318)
T cd08600         151 ----EGKDIAAATLEVLKKYGYTSK-------NDKVYLQTFDPNELKRIKNELLPKMGMDLKLVQLIAYTDWGETQEKDP  219 (318)
T ss_pred             ----ccccHHHHHHHHHHHcCCCCC-------CCeEEEEeCCHHHHHHHHHhhCccccCCcceEEEeccCCCCccccccc
Confidence                234689999999999998531       1479999999999999996 655     466677642211100     


Q ss_pred             --CCcccccccccHHHHHHHHhhccccCCCcceeeec-CCCCCCCChHHHHHHHHcCCeEEEEeCCCC
Q 020686          258 --DTNQSYSEITSDAYLNYIKEYCVGIGPWKDTVVPV-ANNYSQTPTDLVARAHALDLQIHIGNTTTG  322 (322)
Q Consensus       258 --~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~v~~ah~~Gl~V~vWTvn~~  322 (322)
                        .....|..+.++..+..++.+|.+++++...+.+. ...+...++++|+.+|++|+.|++||||++
T Consensus       220 ~~~~~~~~~~~~~~~~l~~~~~~a~~i~~~~~~l~~~~~~~~~~~~~~~V~~ah~~Gl~V~~wTvn~~  287 (318)
T cd08600         220 GGWVNYDYDWMFTKGGLKEIAKYADGVGPWYSMIIEEKSSKGNIVLTDLVKDAHEAGLEVHPYTVRKD  287 (318)
T ss_pred             CCccccchhhhcCHHHHHHHHHhheeccCCHHHcccccCCCCccChHHHHHHHHHcCCEEEEEeccCC
Confidence              01123444434445777788899999887655442 112345688999999999999999999985

This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Escherichia coli periplasmic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46), GlpQ, and similar proteins. GP-GDE plays an essential role in the metabolic pathway of E. coli. It catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. E. coli possesses two major G3P uptake systems: Glp and Ugp, which contain genes coding for two different GP-GDEs. GlpQ gene from the E. coli glp operon codes for a periplasmic phosphodiesterase GlpQ, which is the prototype of this family. GlpQ is a dimeric enzyme that hydrolyzes periplasmic glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GP

>cd08559 GDPD_periplasmic_GlpQ_like Periplasmic glycerophosphodiester phosphodiesterase domain (GlpQ) and similar proteins

Probab=100.00  E-value=4.7e-47  Score=350.89  Aligned_cols=257  Identities=48%  Similarity=0.760  Sum_probs=189.0

Q ss_pred             CeEEeeCCCCCCCchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCCccccCCCCcccccccccccccCCccccc
Q 020686           44 PYNLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVNTTG  123 (322)
Q Consensus        44 p~iiaHRG~~~~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~~~~~g~~~~g  123 (322)
                      |+||||||+++.+||||++||++|++.|+|+||||||+||||++||+||.+|.|+|++.....+.         |....|
T Consensus         1 p~iiAHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDg~lVv~HD~~l~r~t~~~~~~~~~---------~~~~~~   71 (296)
T cd08559           1 PLVIAHRGASGYAPEHTLAAYALAIEMGADYIEQDLVMTKDGVLVARHDPTLDRTTNVAEHFPFR---------GRKDTG   71 (296)
T ss_pred             CeEEEeCCcCCCCccchHHHHHHHHHhCCCEEEEeeEEccCCCEEEeccchhhcCCCcccccccc---------ccCCCC
Confidence            78999999999999999999999999999999999999999999999999999999987422221         222224


Q ss_pred             ceeeccCHHHHccCcccccc----cCCCcccCCCccccCHHHHHHHHHhcC----CcceEeeeeCCcccccccccccCcc
Q 020686          124 FFVVDFTLEELKTLRAKQRY----SFRDQQYNGKFPIITFEEYISIALDAQ----RVVGIYPEMKNPVFINQHVKWADGK  195 (322)
Q Consensus       124 ~~i~~~t~~el~~l~~~~~~----~~r~~~~~~~~~iptL~e~l~~~~~~~----~~~~l~iEiK~~~~~~~~~~~~~~~  195 (322)
                      ..|.++|++||++++++.|+    +.|.+.+..++++|||+|+|+.++.++    +.++++||||.+.....     .+.
T Consensus        72 ~~v~~~t~~eL~~l~~~~~~~~~~~~~~~~~~~~~~iptL~evl~~~~~~~~~~~~~~~l~IEiK~~~~~~~-----~~~  146 (296)
T cd08559          72 YFVIDFTLAELKTLRAGSWFNQRYPERAPSYYGGFKIPTLEEVIELAQGLNKSTGRNVGIYPETKHPTFHKQ-----EGP  146 (296)
T ss_pred             eeeecCcHHHHhcCCCCCcccccccccCccccCCCCcCCHHHHHHHHHhhhhccCCcceEEEEecChhhhhh-----cCC
Confidence            48999999999999998654    222222334569999999999997632    25899999998653211     235


Q ss_pred             hHHHHHHHHHHHcCCCCccccccccCCCEEEeccChhHHHHHhhcCCC-CeEEEEeccCccCCCCcccccccccHHHHHH
Q 020686          196 KFEDKFVDTLKKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTDS-PKIFLIDDVDILTEDTNQSYSEITSDAYLNY  274 (322)
Q Consensus       196 ~~~~~v~~~l~~~~~~~~~~~~~~~~~rv~i~Sf~~~~l~~~~~~~~~-~~v~l~~~~~~~~~~~~~~~~~~~~~~~l~~  274 (322)
                      .+++.++++++++++...       .++++|+||++++|+++|++.|. +.++|+.............|..+.....++.
T Consensus       147 ~~~~~v~~~l~~~~~~~~-------~~~v~i~SF~~~~L~~~r~~~p~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (296)
T cd08559         147 DIEEKLLEVLKKYGYTGK-------NDPVFIQSFEPESLKRLRNETPDIPLVQLIDYGDWAETDKKYTYAWLTTDAGLKE  219 (296)
T ss_pred             CHHHHHHHHHHHcCCCCC-------CCCEEEecCCHHHHHHHHHhCCCCcEEEEecCCCCCccccccccchhcCHHHHHH
Confidence            789999999999987520       13899999999999999998764 5666665432211111223333444445666


Q ss_pred             HHhhccccCCCcceeeecCCCCCCCChHHHHHHHHcCCeEEEEeCCC
Q 020686          275 IKEYCVGIGPWKDTVVPVANNYSQTPTDLVARAHALDLQIHIGNTTT  321 (322)
Q Consensus       275 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~ah~~Gl~V~vWTvn~  321 (322)
                      ++.++.++++....+.+........++++|+.+|++|++|++||||+
T Consensus       220 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~a~~~Gl~v~~WTvn~  266 (296)
T cd08559         220 IAKYADGIGPWKSLIIPEDSNGLLVPTDLVKDAHKAGLLVHPYTFRN  266 (296)
T ss_pred             HHHHhhhhCCCHHhccccccccccCchHHHHHHHHcCCEEEEEEecC
Confidence            65567777765433321111223445899999999999999999998

This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in bacterial and eukaryotic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46) similar to Escherichia coli periplasmic phosphodiesterase GlpQ. GP-GDEs are involved in glycerol metabolism and catalyze the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. In E. coli, there are two major G3P uptake systems: Glp and Ugp, which contain genes coding for two different GP-GDEs. GlpQ gene from the glp operon codes for a periplasmic phosphodiesterase GlpQ. GlpQ is a dimeric enzyme that hydrolyzes periplasmic glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG), glycerophosphoinositol (GPI),

>cd08574 GDPD_GDE_2_3_6 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE2, GDE3, GDE6-like proteins

Probab=100.00  E-value=4.9e-45  Score=330.01  Aligned_cols=220  Identities=20%  Similarity=0.235  Sum_probs=166.2

Q ss_pred             CCeEEeeCCCCCCCchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCCccccCCCCcccccccccccccCCcccc
Q 020686           43 RPYNLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVNTT  122 (322)
Q Consensus        43 ~p~iiaHRG~~~~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~~~~~g~~~~  122 (322)
                      +|.||||||+++.+||||++||++|++.|+|+||||||+||||++||+||.+|+|+|++..  .++.++          +
T Consensus         1 ~~~iiAHRG~~~~aPENTl~Af~~A~~~Gad~iE~DV~lTkDg~lVV~HD~~l~Rtt~~~g--~~~~~~----------~   68 (252)
T cd08574           1 KPALIGHRGAPMLAPENTLMSFEKALEHGVYGLETDVTISYDGVPFLMHDRTLRRTTNVAD--VFPERA----------H   68 (252)
T ss_pred             CCeEEecCCCCCCCCccHHHHHHHHHHcCCCEEEEEEeEccCCcEEEeCCCcccccCCCCc--cccccc----------c
Confidence            4789999999999999999999999999999999999999999999999999999999873  111111          1


Q ss_pred             cceeeccCHHHHccCcccccccCCCc-------------ccCCCccccCHHHHHHHHHhcCCcceEeeeeCCcccccccc
Q 020686          123 GFFVVDFTLEELKTLRAKQRYSFRDQ-------------QYNGKFPIITFEEYISIALDAQRVVGIYPEMKNPVFINQHV  189 (322)
Q Consensus       123 g~~i~~~t~~el~~l~~~~~~~~r~~-------------~~~~~~~iptL~e~l~~~~~~~~~~~l~iEiK~~~~~~~~~  189 (322)
                      + .|.++|++||++|+++.||..+++             .+.+ ++||||+|+|+.+++.+  +.++||||.+....   
T Consensus        69 ~-~v~~~T~~eL~~ld~g~~f~~~~~~~~~~~~~~~~~~~~~~-~~IPtL~evl~~~~~~~--~~l~iEiK~~~~~~---  141 (252)
T cd08574          69 E-RASMFTWTDLQQLNAGQWFLKDDPFWTASSLSESDREEAGN-QSIPSLAELLRLAKKHN--KSVIFDLRRPPPNH---  141 (252)
T ss_pred             c-chhcCCHHHHhhCCCCCcccCCCccchhcccccchhhhcCC-CCCCCHHHHHHHHHHcC--CeEEEEecCCcccC---
Confidence            2 689999999999999987743221             3344 69999999999998644  78999999754210   


Q ss_pred             cccCcchHHHHHHHHHHHcCCCCccccccccCCCEEEeccChhHHHHHhhcCCCCeEEEEeccCccCCCCcccccccccH
Q 020686          190 KWADGKKFEDKFVDTLKKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTDSPKIFLIDDVDILTEDTNQSYSEITSD  269 (322)
Q Consensus       190 ~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~rv~i~Sf~~~~l~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~  269 (322)
                        +....+++.++++++++++..          +++++||+.. ++++|++.|.....+.....                
T Consensus       142 --~~~~~~~~~v~~~l~~~~~~~----------~~v~~s~~~~-~~~~~~~~p~~~~~~~~~~~----------------  192 (252)
T cd08574         142 --PYYQSYVNITLDTILASGIPQ----------HQVFWLPDEY-RALVRKVAPGFQQVSGRKLP----------------  192 (252)
T ss_pred             --ccHHHHHHHHHHHHHHcCCCc----------ccEEEccHHH-HHHHHHHCCCCeEeeccccc----------------
Confidence              012368899999999998753          5566566654 78999988776554321110                


Q ss_pred             HHHHHHHh-hccccCCCcceeeecCCCCCCCChHHHHHHHHcCCeEEEEeCCCC
Q 020686          270 AYLNYIKE-YCVGIGPWKDTVVPVANNYSQTPTDLVARAHALDLQIHIGNTTTG  322 (322)
Q Consensus       270 ~~l~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~v~~ah~~Gl~V~vWTvn~~  322 (322)
                        ...+.. .+..+++          ++..+++++|+.+|++|++|++||||+|
T Consensus       193 --~~~~~~~~~~~~~~----------~~~~~~~~~v~~~~~~g~~v~~WTVn~~  234 (252)
T cd08574         193 --VESLRENGISRLNL----------EYSQLSAQEIREYSKANISVNLYVVNEP  234 (252)
T ss_pred             --hHHHHhcCCeEEcc----------CcccCCHHHHHHHHHCCCEEEEEccCCH
Confidence              111111 1222222          5667799999999999999999999985

This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian glycerophosphodiester phosphodiesterase domain-containing protein subtype 5 (GDE2), subtype 2 (GDE3), subtype 1 (GDE6), and their eukaryotic homologs. Mammalian GDE2, GDE3, and GDE6 show very high sequence similarity to each other and have been classified into the same family. Although they are all transmembrane proteins, based on different pattern of tissue distribution, these enzymes might display diverse cellular functions. Mammalian GDE2 is primarily expressed in mature neurons. It selectively hydrolyzes glycerophosphocholine (GPC) and mainly functions in a complex with an antioxidant scavenger peroxiredoxin1 (Prdx1) to control motor neuron differentiation in the spinal cord. Mammalian GDE3 is specifically expressed in bo

>cd08580 GDPD_Rv2277c_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial protein Rv2277c and similar proteins

Probab=100.00  E-value=5.1e-45  Score=330.23  Aligned_cols=227  Identities=20%  Similarity=0.200  Sum_probs=165.0

Q ss_pred             CeEEeeCCCCCCCchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCCccccCCCCcccccccccccccCCccccc
Q 020686           44 PYNLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVNTTG  123 (322)
Q Consensus        44 p~iiaHRG~~~~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~~~~~g~~~~g  123 (322)
                      |++|||||+++.+||||++||++|++.|+|+||+|||+||||++||+||.+++|+|++.                    |
T Consensus         1 p~viaHRG~~~~~PENTl~Af~~A~~~G~d~iE~DV~lTkDg~lVv~HD~~l~R~t~~~--------------------g   60 (263)
T cd08580           1 PLIVAHRGGTADAPENTLLAISKALANGADAIWLTVQLSKDGVPVLYRPSDLKSLTNGS--------------------G   60 (263)
T ss_pred             CeEEEcCCCCCCCCccHHHHHHHHHHcCCCEEEEEeEECCCCCEEEeCCCchhcccCCC--------------------C
Confidence            68999999999999999999999999999999999999999999999999999999987                    4


Q ss_pred             ceeeccCHHHHccCcccccccCC-CcccCC-CccccCHHHHHHHHHhcCCcceEeeeeCCcccccccccccCcchHHHHH
Q 020686          124 FFVVDFTLEELKTLRAKQRYSFR-DQQYNG-KFPIITFEEYISIALDAQRVVGIYPEMKNPVFINQHVKWADGKKFEDKF  201 (322)
Q Consensus       124 ~~i~~~t~~el~~l~~~~~~~~r-~~~~~~-~~~iptL~e~l~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~~~~~v  201 (322)
                       .|.++|++||++|+++.++... ...|.+ ..+||||+|+|+.+..    ..++||+|.+.          ...+++.+
T Consensus        61 -~v~~~t~~el~~ld~g~~~~~~~~~~~~~~~~~iPtL~evl~~~~~----~~l~iEiK~~~----------~~~~~~~v  125 (263)
T cd08580          61 -AVSAYTAAQLATLNAGYNFKPEGGYPYRGKPVGIPTLEQVLRAFPD----TPFILDMKSLP----------ADPQAKAV  125 (263)
T ss_pred             -ChhhCcHHHHhcCCCccccccccCcccCCCCCcCccHHHHHHhhcC----CeEEEEECCCC----------cHHHHHHH
Confidence             7999999999999999876321 112332 3589999999999853    67999999753          13688999


Q ss_pred             HHHHHHcCCCCccccccccCCCEEEeccChhHHHHHhhcCCC-------CeEEEEeccCccC-CCCc---ccccccccHH
Q 020686          202 VDTLKKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTDS-------PKIFLIDDVDILT-EDTN---QSYSEITSDA  270 (322)
Q Consensus       202 ~~~l~~~~~~~~~~~~~~~~~rv~i~Sf~~~~l~~~~~~~~~-------~~v~l~~~~~~~~-~~~~---~~~~~~~~~~  270 (322)
                      +++++++++..          +++|+||+++.|++++++.|.       ....++....... ....   .....+....
T Consensus       126 ~~~i~~~~~~~----------~v~v~SF~~~~l~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  195 (263)
T cd08580         126 ARVLERENAWS----------RVRIYSTNADYQDALAPYPQARLFESRDVTRTRLANVAMAHQCDLPPDSGAWAGFELRR  195 (263)
T ss_pred             HHHHHhcCCCC----------CEEEEECCHHHHHHHHhcCcccccccHHHHHHHHHhhhcccccccCccchhhccccccc
Confidence            99999999864          899999999999999998773       1111111000000 0000   0000000000


Q ss_pred             HHHHHHhhccccCCCcceeeecCCCCCCCChHHHHHHHHc-CCeEEEEeCCCC
Q 020686          271 YLNYIKEYCVGIGPWKDTVVPVANNYSQTPTDLVARAHAL-DLQIHIGNTTTG  322 (322)
Q Consensus       271 ~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~ah~~-Gl~V~vWTvn~~  322 (322)
                      .+.....++.+  .  ..+   ..++..+++++|+.+|++ |++|++||||+|
T Consensus       196 ~~~~~~~~~~~--~--~~~---~~~~~l~t~~~V~~~h~~~gl~V~~WTVN~~  241 (263)
T cd08580         196 KVTVVETFTLG--E--GRS---PVQATLWTPAAVDCFRRNSKVKIVLFGINTA  241 (263)
T ss_pred             cchheeeeccc--c--ccc---ccccccCCHHHHHHHHhcCCcEEEEEEeCCH
Confidence            01111111111  1  111   124567899999999999 999999999986

This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial protein Rv2277c and similar proteins. Members in this subfamily are bacterial homologous of mammalian GDE4, a transmembrane protein whose cellular function has not yet been elucidated.

>cd08601 GDPD_SaGlpQ_like Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins

Probab=100.00  E-value=1e-43  Score=322.41  Aligned_cols=220  Identities=37%  Similarity=0.494  Sum_probs=171.0

Q ss_pred             eEEeeCCCCCCCchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCCccccCC--CCcccccccccccccCCcccc
Q 020686           45 YNLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNI--ADHKEFADRKRTCMVQGVNTT  122 (322)
Q Consensus        45 ~iiaHRG~~~~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l~r~t~~--~~~~~~~~~~~~~~~~g~~~~  122 (322)
                      +||||||+++.+||||++||++|++.|+|+||+|||+||||++||+||.+|+|+|++  .                    
T Consensus         2 ~iiaHRG~~~~~pENT~~af~~A~~~G~d~vE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~--------------------   61 (256)
T cd08601           2 AVIAHRGASGYAPEHTFAAYDLAREMGADYIELDLQMTKDGVLVAMHDETLDRTTNIERP--------------------   61 (256)
T ss_pred             ceEEcCCCCCCCCCchHHHHHHHHHcCCCEEEEEeeECCCCeEEEeCCCccccccCCCCC--------------------
Confidence            589999999999999999999999999999999999999999999999999999998  5                    


Q ss_pred             cceeeccCHHHHccCcccccccC-----CCcccCCCccccCHHHHHHHHHhcCCcceEeeeeCCcccccccccccCcchH
Q 020686          123 GFFVVDFTLEELKTLRAKQRYSF-----RDQQYNGKFPIITFEEYISIALDAQRVVGIYPEMKNPVFINQHVKWADGKKF  197 (322)
Q Consensus       123 g~~i~~~t~~el~~l~~~~~~~~-----r~~~~~~~~~iptL~e~l~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~~  197 (322)
                      | .|.++|++||++++.+.++..     ++..+.+ +++|||+|+|+.++.   ..+++||+|.+..         ...+
T Consensus        62 g-~v~~~t~~el~~l~~~~~~~~~~~~~~~~~~~~-~~iptL~evl~~~~~---~~~l~IEiK~~~~---------~~~~  127 (256)
T cd08601          62 G-PVKDYTLAEIKQLDAGSWFNKAYPEYARESYSG-LKVPTLEEVIERYGG---RANYYIETKSPDL---------YPGM  127 (256)
T ss_pred             c-eeecCcHHHHHhcCCCccccccCccccccccCC-ccCCCHHHHHHHhcc---CceEEEEeeCCCC---------CCCH
Confidence            4 799999999999998776531     1222333 699999999999864   3689999997532         1357


Q ss_pred             HHHHHHHHHHcCCCCccccccccCCCEEEeccChhHHHHHhhcCCC-CeEEEEeccCccCCCCcccccccccHHHHHHHH
Q 020686          198 EDKFVDTLKKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTDS-PKIFLIDDVDILTEDTNQSYSEITSDAYLNYIK  276 (322)
Q Consensus       198 ~~~v~~~l~~~~~~~~~~~~~~~~~rv~i~Sf~~~~l~~~~~~~~~-~~v~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~  276 (322)
                      ++.++++++++++..+..    ..++++|+||+++++++++++.|. +.+++++.....     .     .....++.+.
T Consensus       128 ~~~v~~~l~~~~~~~~~~----~~~~v~i~Sf~~~~l~~~~~~~p~~~~~~l~~~~~~~-----~-----~~~~~~~~~~  193 (256)
T cd08601         128 EEKLLATLDKYGLLTDNL----KNGQVIIQSFSKESLKKLHQLNPNIPLVQLLWYGEGA-----E-----TYDKWLDEIK  193 (256)
T ss_pred             HHHHHHHHHHcCCCcccC----CCCCEEEecCCHHHHHHHHHhCCCCcEEEEeccCccc-----c-----cchhHHHHHH
Confidence            899999999998762100    014899999999999999998664 556665432110     0     1112344444


Q ss_pred             hhccccCCCcceeeecCCCCCCCChHHHHHHHHcCCeEEEEeCCCC
Q 020686          277 EYCVGIGPWKDTVVPVANNYSQTPTDLVARAHALDLQIHIGNTTTG  322 (322)
Q Consensus       277 ~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~ah~~Gl~V~vWTvn~~  322 (322)
                      .++.++++          ++..+++++++.+|++|++|++||||++
T Consensus       194 ~~~~~~~~----------~~~~~~~~~v~~~~~~g~~v~~wTvn~~  229 (256)
T cd08601         194 EYAIGIGP----------SIADADPWMVHLIHKKGLLVHPYTVNEK  229 (256)
T ss_pred             hcCeEeCC----------chhhcCHHHHHHHHHCCCEEEEEecCCH
Confidence            44445444          3445689999999999999999999984

This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46) from Staphylococcus aureus, Bacillus subtilis and similar proteins. Members in this family show very high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.

>PRK09454 ugpQ cytoplasmic glycerophosphodiester phosphodiesterase; Provisional

Probab=100.00  E-value=2.9e-43  Score=318.17  Aligned_cols=212  Identities=23%  Similarity=0.252  Sum_probs=160.4

Q ss_pred             CCCeEEeeCCCCCCCchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCCccccCCCCcccccccccccccCCccc
Q 020686           42 SRPYNLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVNT  121 (322)
Q Consensus        42 ~~p~iiaHRG~~~~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~~~~~g~~~  121 (322)
                      ..|.+|||||+++.+||||++||++|++.|+|+||+|||+||||++||+||.++.|+|++.                   
T Consensus         6 ~~~~iiaHRG~~~~~pENT~~Af~~A~~~G~d~vE~DV~lT~Dg~lVV~HD~~l~R~t~~~-------------------   66 (249)
T PRK09454          6 PYPRIVAHRGGGKLAPENTLAAIDVGARYGHRMIEFDAKLSADGEIFLLHDDTLERTSNGW-------------------   66 (249)
T ss_pred             CCCeEEECCCCCCCCChHHHHHHHHHHHcCCCEEEEEeeECCCCCEEEECCCcccccCCCC-------------------
Confidence            3589999999999999999999999999999999999999999999999999999999987                   


Q ss_pred             ccceeeccCHHHHccCcccccccCCCcccCCCccccCHHHHHHHHHhcCCcceEeeeeCCcccccccccccCcchHHHHH
Q 020686          122 TGFFVVDFTLEELKTLRAKQRYSFRDQQYNGKFPIITFEEYISIALDAQRVVGIYPEMKNPVFINQHVKWADGKKFEDKF  201 (322)
Q Consensus       122 ~g~~i~~~t~~el~~l~~~~~~~~r~~~~~~~~~iptL~e~l~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~~~~~v  201 (322)
                       | .|.++||+||++++++.++.   ..+.+ +++|||+|+|+.+...+  +.++||+|.....        .....+.+
T Consensus        67 -~-~v~~~t~~el~~l~~~~~~~---~~~~~-~~iPtL~evl~~~~~~~--~~l~iEiK~~~~~--------~~~~~~~v  130 (249)
T PRK09454         67 -G-VAGELTWQDLAQLDAGSWFS---AAFAG-EPLPTLSQVAARCRAHG--MAANIEIKPTTGR--------EAETGRVV  130 (249)
T ss_pred             -C-chhhCCHHHHHhcCCCCccC---CCCCC-CcCCCHHHHHHHHHhcC--CEEEEEECCCCCc--------chhHHHHH
Confidence             4 69999999999999987652   33444 58999999999987543  7899999964311        11233333


Q ss_pred             HHHHHHc--CCCCccccccccCCCEEEeccChhHHHHHhhcCCC-CeEEEEeccCccCCCCcccccccccHHHHHHHHhh
Q 020686          202 VDTLKKY--GYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTDS-PKIFLIDDVDILTEDTNQSYSEITSDAYLNYIKEY  278 (322)
Q Consensus       202 ~~~l~~~--~~~~~~~~~~~~~~rv~i~Sf~~~~l~~~~~~~~~-~~v~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  278 (322)
                      ..+++..  +..          ++++|+||++.+|+++|++.|. +..++.....       .        .....+...
T Consensus       131 ~~~~~~~~~~~~----------~~v~v~SF~~~~l~~l~~~~p~~~~~~l~~~~~-------~--------~~~~~~~~~  185 (249)
T PRK09454        131 ALAARALWAGAA----------VPPLLSSFSEDALEAARQAAPELPRGLLLDEWP-------D--------DWLELTRRL  185 (249)
T ss_pred             HHHHHHHhcCCC----------CCEEEEeCCHHHHHHHHHhCCCCcEEEEecccc-------c--------cHHHHHHhc
Confidence            3334443  222          3899999999999999998775 4555543211       0        011222221


Q ss_pred             ccccCCCcceeeecCCCCCCCChHHHHHHHHcCCeEEEEeCCCC
Q 020686          279 CVGIGPWKDTVVPVANNYSQTPTDLVARAHALDLQIHIGNTTTG  322 (322)
Q Consensus       279 ~~~i~~~~~~~~~~~~~~~~~~~~~v~~ah~~Gl~V~vWTvn~~  322 (322)
                          +.  ..+.+   ++..+++++++.+|++|++|++||||+|
T Consensus       186 ----~~--~~~~~---~~~~~~~~~v~~~~~~g~~v~~WTvn~~  220 (249)
T PRK09454        186 ----GC--VSLHL---NHKLLDEARVAALKAAGLRILVYTVNDP  220 (249)
T ss_pred             ----CC--eEEec---ccccCCHHHHHHHHHCCCEEEEEeCCCH
Confidence                11  11222   4566799999999999999999999985

>cd08573 GDPD_GDE1 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE1 and similar proteins

Probab=100.00  E-value=2.3e-43  Score=320.01  Aligned_cols=226  Identities=24%  Similarity=0.291  Sum_probs=168.0

Q ss_pred             EEeeCCCCCCCchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCCccccCCCCcccccccccccccCCcccccce
Q 020686           46 NLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVNTTGFF  125 (322)
Q Consensus        46 iiaHRG~~~~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~~~~~g~~~~g~~  125 (322)
                      ||||||+++.+||||++||++|++.|+|+||||||+||||++||+||.+++|+|++.                    | .
T Consensus         1 iiaHRG~~~~~pENTl~af~~A~~~Gad~iE~DV~lTkDg~~Vv~HD~~l~R~t~~~--------------------g-~   59 (258)
T cd08573           1 IIGHRGAGHDAPENTLAAFRQAKKNGADGVEFDLEFTKDGVPVLMHDDTVDRTTDGT--------------------G-L   59 (258)
T ss_pred             CEecCCCCCCCCccHHHHHHHHHHcCCCEEEEEeeECCCCcEEEECCCCcceecCCC--------------------c-e
Confidence            589999999999999999999999999999999999999999999999999999987                    4 7


Q ss_pred             eeccCHHHHccCcccccccCCCcccCCCccccCHHHHHHHHHhcCCcceEeeeeCCcccccccccccCcchHHHHHHHHH
Q 020686          126 VVDFTLEELKTLRAKQRYSFRDQQYNGKFPIITFEEYISIALDAQRVVGIYPEMKNPVFINQHVKWADGKKFEDKFVDTL  205 (322)
Q Consensus       126 i~~~t~~el~~l~~~~~~~~r~~~~~~~~~iptL~e~l~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~~~~~v~~~l  205 (322)
                      |.++||+||++++++.+++.. +.+.+ +++|||+|+|+.+++.+  +.++||+|.+.           ..+++.+++++
T Consensus        60 v~~~t~~el~~l~~~~~~~~~-~~~~~-~~iptL~evl~~~~~~~--~~l~iEiK~~~-----------~~~~~~v~~~l  124 (258)
T cd08573          60 VAELTWEELRKLNAAAKHRLS-SRFPG-EKIPTLEEAVKECLENN--LRMIFDVKSNS-----------SKLVDALKNLF  124 (258)
T ss_pred             EecCcHHHHhhCCCCCCCCCc-cccCC-CCCCCHHHHHHHHHhcC--CEEEEEeCCCc-----------HHHHHHHHHHH
Confidence            999999999999998776432 23444 59999999999997543  78999999753           25788999999


Q ss_pred             HHcC-CCCccccccccCCCEEEeccChhHHHHHhhcCCCCeEEEEecc-CccCCC---Ccccc--cccccHHHHHHHHhh
Q 020686          206 KKYG-YKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTDSPKIFLIDDV-DILTED---TNQSY--SEITSDAYLNYIKEY  278 (322)
Q Consensus       206 ~~~~-~~~~~~~~~~~~~rv~i~Sf~~~~l~~~~~~~~~~~v~l~~~~-~~~~~~---~~~~~--~~~~~~~~l~~~~~~  278 (322)
                      ++++ +.          ++++++||++.+++++|+..|...+.++... ......   ....+  +.......+..+..+
T Consensus       125 ~~~~~~~----------~~v~v~SF~~~~l~~~~~~~p~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (258)
T cd08573         125 KKYPGLY----------DKAIVCSFNPIVIYKVRKADPKILTGLTWRPWFLSYTDDEGGPRRKSGWKHFLYSMLDVILEW  194 (258)
T ss_pred             HHCCCcc----------CCEEEEECCHHHHHHHHHhCCCceEEEecCcchhcccccccCcccchHHHHHHHHHHHHHHHH
Confidence            9998 65          3899999999999999999876554444321 100000   00000  000000011111111


Q ss_pred             c------cccCCCcceeeecCCCCCCCChHHHHHHHHcCCeEEEEeCCCC
Q 020686          279 C------VGIGPWKDTVVPVANNYSQTPTDLVARAHALDLQIHIGNTTTG  322 (322)
Q Consensus       279 ~------~~i~~~~~~~~~~~~~~~~~~~~~v~~ah~~Gl~V~vWTvn~~  322 (322)
                      .      ..+++  ..+.+   ++..+++++|+.+|++|++|++||||+|
T Consensus       195 ~~~~~~~~~~~~--~~v~~---~~~~~~~~~v~~~~~~G~~v~vWTVn~~  239 (258)
T cd08573         195 SLHSWLPYFLGV--SALLI---HKDDISSAYVRYWRARGIRVIAWTVNTP  239 (258)
T ss_pred             HHHhhhhhhcCe--eEEEe---chHhcCHHHHHHHHHCCCEEEEEecCCH
Confidence            0      01111  12222   5667899999999999999999999986

This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE1 (also known as MIR16, membrane interacting protein of RGS16) and their metazoan homologs. GDE1 is widely expressed in mammalian tissues, including the heart, brain, liver, and kidney. It shows sequence homology to bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyzes the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. GDE1 has been characterized as GPI-GDE (EC 3.1.4.44) that selectively hydrolyzes extracellular glycerophosphoinositol (GPI) to generate glycerol phosphate and inositol. It functions as an integral membrane-bound glycoprotein interacting with regulator of G protein signaling protein RGS16, and is modulated by G

>cd08562 GDPD_EcUgpQ_like Glycerophosphodiester phosphodiesterase domain in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase UgpQ and similar proteins

Probab=100.00  E-value=3.4e-43  Score=313.69  Aligned_cols=210  Identities=25%  Similarity=0.320  Sum_probs=165.2

Q ss_pred             EEeeCCCCCCCchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCCccccCCCCcccccccccccccCCcccccce
Q 020686           46 NLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVNTTGFF  125 (322)
Q Consensus        46 iiaHRG~~~~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~~~~~g~~~~g~~  125 (322)
                      ||||||+++.+||||++||++|++.|+|+||+|||+||||++||+||.++.|+|++.                    | .
T Consensus         1 iiaHRG~~~~~pENT~~af~~A~~~gad~iE~Dv~~TkDg~lvv~HD~~l~r~t~~~--------------------~-~   59 (229)
T cd08562           1 IIAHRGASSLAPENTLAAFRAAAELGVRWVEFDVKLSGDGTLVLIHDDTLDRTTNGS--------------------G-A   59 (229)
T ss_pred             CEeCCCCCCCCCchHHHHHHHHHHcCCCEEEEEEeECCCCCEEEEcCCCCccccCCC--------------------c-e
Confidence            689999999999999999999999999999999999999999999999999999987                    4 7


Q ss_pred             eeccCHHHHccCcccccccCCCcccCCCccccCHHHHHHHHHhcCCcceEeeeeCCcccccccccccCcchHHHHHHHHH
Q 020686          126 VVDFTLEELKTLRAKQRYSFRDQQYNGKFPIITFEEYISIALDAQRVVGIYPEMKNPVFINQHVKWADGKKFEDKFVDTL  205 (322)
Q Consensus       126 i~~~t~~el~~l~~~~~~~~r~~~~~~~~~iptL~e~l~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~~~~~v~~~l  205 (322)
                      |+++|++||++++.+.++   .+.+.+ .++|||+|+|+.+++.+  +.+++|+|.+..        ....+++.+++++
T Consensus        60 i~~lt~~el~~l~~~~~~---~~~~~~-~~iptl~evl~~~~~~~--~~l~iEiK~~~~--------~~~~~~~~v~~~l  125 (229)
T cd08562          60 VTELTWAELAQLDAGSWF---SPEFAG-EPIPTLADVLELARELG--LGLNLEIKPDPG--------DEALTARVVAAAL  125 (229)
T ss_pred             eecCcHHHHhhcCCCccc---CCCCCC-CCCCCHHHHHHHHHhcC--CEEEEEECCCCC--------ccHHHHHHHHHHH
Confidence            999999999999987643   233343 59999999999997544  889999997542        1245788999999


Q ss_pred             HHcCCCCccccccccCCCEEEeccChhHHHHHhhcCCCCeEEEEeccCccCCCCcccccccccHHHHHHHHhhccccCCC
Q 020686          206 KKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTDSPKIFLIDDVDILTEDTNQSYSEITSDAYLNYIKEYCVGIGPW  285 (322)
Q Consensus       206 ~~~~~~~~~~~~~~~~~rv~i~Sf~~~~l~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~  285 (322)
                      ++++...         +|++++||+++++++++++.|...+.++.....     .         ...+.+...    +. 
T Consensus       126 ~~~~~~~---------~~v~~~Sf~~~~l~~~~~~~p~~~~~~l~~~~~-----~---------~~~~~~~~~----~~-  177 (229)
T cd08562         126 RELWPHA---------SKLLLSSFSLEALRAARRAAPELPLGLLFDTLP-----A---------DWLELLAAL----GA-  177 (229)
T ss_pred             HHhcCCc---------CCEEEECCCHHHHHHHHHhCCCCcEEEEecCCC-----c---------CHHHHHHHc----CC-
Confidence            9998742         389999999999999999877544444322110     0         011222221    11 


Q ss_pred             cceeeecCCCCCCCChHHHHHHHHcCCeEEEEeCCCC
Q 020686          286 KDTVVPVANNYSQTPTDLVARAHALDLQIHIGNTTTG  322 (322)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~v~~ah~~Gl~V~vWTvn~~  322 (322)
                       ..+.+   ++..+++++++.+|++|++|++||||++
T Consensus       178 -~~~~~---~~~~~~~~~v~~~~~~g~~v~~wTvn~~  210 (229)
T cd08562         178 -VSIHL---NYRGLTEEQVKALKDAGYKLLVYTVNDP  210 (229)
T ss_pred             -eEEec---ChhhCCHHHHHHHHHCCCEEEEEeCCCH
Confidence             11221   4556789999999999999999999984

This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46), UgpQ, and similar proteins. GP-GDE plays an essential role in the metabolic pathway of E. coli. It catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. E. coli possesses two major G3P uptake systems: Glp and Ugp, which contain genes coding for two distinct GP-GDEs. UgpQ gene from the E. coli ugp operon codes for a cytosolic phosphodiesterase GlpQ, which is the prototype of this family. Various glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG)

>cd08612 GDPD_GDE4 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4 and similar proteins

Probab=100.00  E-value=4.2e-43  Score=325.07  Aligned_cols=234  Identities=18%  Similarity=0.174  Sum_probs=167.1

Q ss_pred             CCCCCCCeEEeeCCCCCCCchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCCccccCCCCcccccccccccccC
Q 020686           38 PLQTSRPYNLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQ  117 (322)
Q Consensus        38 ~~~~~~p~iiaHRG~~~~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~~~~~  117 (322)
                      ......|.+|||||+++.+||||++||+.|++.|+|+||+|||+||||++||+||.+++|+|++.               
T Consensus        21 ~~~~~~~~iiAHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDG~lVV~HD~~l~Rtt~~~---------------   85 (300)
T cd08612          21 KKSPFPCRHISHRGGSGENLENTMEAFEHAVKVGTDMLELDVHLTKDGQVVVSHDENLLRSCGVD---------------   85 (300)
T ss_pred             cccCCCCCEEECCCCCCCCCccHHHHHHHHHHcCCCEEEEEeeECcCCeEEEECCccccccCCCC---------------
Confidence            45578899999999999999999999999999999999999999999999999999999999987               


Q ss_pred             CcccccceeeccCHHHHccCcccccc-----cCCCcccCCCccccCHHHHHHHHHhcCCcceEeeeeCCccccccccccc
Q 020686          118 GVNTTGFFVVDFTLEELKTLRAKQRY-----SFRDQQYNGKFPIITFEEYISIALDAQRVVGIYPEMKNPVFINQHVKWA  192 (322)
Q Consensus       118 g~~~~g~~i~~~t~~el~~l~~~~~~-----~~r~~~~~~~~~iptL~e~l~~~~~~~~~~~l~iEiK~~~~~~~~~~~~  192 (322)
                           | .|.++|++||++++.+...     .+++..+.+ ++||||+|+|+.+.    .+.++||||.+.         
T Consensus        86 -----g-~V~~~t~~eL~~l~~~~~~~~~~~~~~~~~~~g-~~IPtL~EvL~~~~----~~~lnIEiK~~~---------  145 (300)
T cd08612          86 -----K-LVSDLNYADLPPYLEKLEVTFSPGDYCVPKGSD-RRIPLLEEVFEAFP----DTPINIDIKVEN---------  145 (300)
T ss_pred             -----c-ccccCCHHHHhhccccccccccCCccccccCCC-CCCCCHHHHHHhCC----CCeEEEEECCCc---------
Confidence                 4 7999999999999543211     112234444 59999999999873    268999999753         


Q ss_pred             CcchHHHHHHHHHHHcCCCCccccccccCCCEEEeccChhHHHHHhhcCCCCeEEEEeccC-----------ccCCCCcc
Q 020686          193 DGKKFEDKFVDTLKKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTDSPKIFLIDDVD-----------ILTEDTNQ  261 (322)
Q Consensus       193 ~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~rv~i~Sf~~~~l~~~~~~~~~~~v~l~~~~~-----------~~~~~~~~  261 (322)
                        ..+++.++++++++++..          +++|+||++++|++++++.|.....++....           ........
T Consensus       146 --~~~~~~v~~~i~~~~~~~----------~v~isSF~~~~L~~~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (300)
T cd08612         146 --DELIKKVSDLVRKYKRED----------ITVWGSFNDEIVKKCHKENPNIPLFFSLKRVLLLLLLYYTGLLPFIPIKE  213 (300)
T ss_pred             --hHHHHHHHHHHHHcCCCC----------cEEEEeCCHHHHHHHHHhCCCccEEechHHHHHHHHHHHcccCccccCcc
Confidence              258899999999999764          8999999999999999998765544422110           00000000


Q ss_pred             cccccccHHHHHHHHhhccc--cCCCcceeeecCCCCCCCChHHHHHHHHcCCeEEEEeCCCC
Q 020686          262 SYSEITSDAYLNYIKEYCVG--IGPWKDTVVPVANNYSQTPTDLVARAHALDLQIHIGNTTTG  322 (322)
Q Consensus       262 ~~~~~~~~~~l~~~~~~~~~--i~~~~~~~~~~~~~~~~~~~~~v~~ah~~Gl~V~vWTvn~~  322 (322)
                      ........  ......+...  .......+++  .++..+++++|+.+|++|++|++||||+|
T Consensus       214 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~G~~v~vWTVNd~  272 (300)
T cd08612         214 SFLEIPMP--SIFLKTYFPKSMSRLNRFVLFL--IDWLLMRPSLFRHLQKRGIQVYGWVLNDE  272 (300)
T ss_pred             ccccccch--hhhhhhcccccccccccceecc--cccccCCHHHHHHHHHCCCEEEEeecCCH
Confidence            00000000  0000000000  0000001111  13556799999999999999999999985

This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE4 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 1 (GDPD1)) and similar proteins. Mammalian GDE4 is a transmembrane protein whose cellular function has not yet been elucidated. It is expressed widely, including in placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocytes. It is also expressed in the growth cones in neuroblastoma Neuro2a cells, which suggests GDE4 may play some distinct role from other members of the GDE family.

>cd08581 GDPD_like_1 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases

Probab=100.00  E-value=4.8e-43  Score=312.70  Aligned_cols=209  Identities=22%  Similarity=0.268  Sum_probs=153.0

Q ss_pred             EEeeCCCCCCCchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCCccccCCCCcccccccccccccCCcccccce
Q 020686           46 NLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVNTTGFF  125 (322)
Q Consensus        46 iiaHRG~~~~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~~~~~g~~~~g~~  125 (322)
                      ||||||+++.+||||++||++|++.|+|+||+|||+||||++||+||.+|+|+|++.                    | .
T Consensus         1 iiaHRG~~~~~PENTl~Af~~A~~~gad~iE~DV~lTkDg~~Vv~HD~~l~r~t~~~--------------------~-~   59 (229)
T cd08581           1 LVAHRGYPARYPENTLVGFRAAVDAGARFVEFDVQLSADGVPVVFHDDTLLRLTGVE--------------------G-L   59 (229)
T ss_pred             CEeCCCCCCCCCccHHHHHHHHHHcCCCEEEEeeeECCCCcEEEECCCccccccCCC--------------------c-e
Confidence            589999999999999999999999999999999999999999999999999999987                    4 7


Q ss_pred             eeccCHHHHccCcccccccCCCcccCCCccccCHHHHHHHHHhcCCcceEeeeeCCcccccccccccCcchHHHHHHHHH
Q 020686          126 VVDFTLEELKTLRAKQRYSFRDQQYNGKFPIITFEEYISIALDAQRVVGIYPEMKNPVFINQHVKWADGKKFEDKFVDTL  205 (322)
Q Consensus       126 i~~~t~~el~~l~~~~~~~~r~~~~~~~~~iptL~e~l~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~~~~~v~~~l  205 (322)
                      |.++|++||++++.+....+ +..+.+ ++||||+|+|+.++++ ..++++||+|.+...        ...+.+.+.+++
T Consensus        60 v~~~t~~el~~l~~~~~~~~-~~~~~~-~~iptL~evl~~~~~~-~~~~l~iEiK~~~~~--------~~~~~~~v~~~~  128 (229)
T cd08581          60 LHELEDAELDSLRVAEPARF-GSRFAG-EPLPSLAAVVQWLAQH-PQVTLFVEIKTESLD--------RFGLERVVDKVL  128 (229)
T ss_pred             eccCCHHHHhhcccccCccc-ccccCC-ccCCCHHHHHHHHhhC-CCceEEEEecCCccc--------ccchhHHHHHHH
Confidence            99999999999976432211 234444 5999999999998753 247899999976421        122344444555


Q ss_pred             HHcC-CCCccccccccCCCEEEeccChhHHHHHhhcCCCCeEEEEeccCccCCCCcccccccccHHHHHHHHhhccccCC
Q 020686          206 KKYG-YKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTDSPKIFLIDDVDILTEDTNQSYSEITSDAYLNYIKEYCVGIGP  284 (322)
Q Consensus       206 ~~~~-~~~~~~~~~~~~~rv~i~Sf~~~~l~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~  284 (322)
                      ++.+ ..          ++++|+||++++|+++|++.+.+..+++....               ......    +..+++
T Consensus       129 ~~~~~~~----------~~~~i~SF~~~~l~~~r~~~~~~~~~l~~~~~---------------~~~~~~----~~~~~~  179 (229)
T cd08581         129 RALPAVA----------AQRVLISFDYDLLALAKQQGGPRTGWVLPDWD---------------DASLAE----ADELQP  179 (229)
T ss_pred             HHHHhcc----------CCeEEEeCCHHHHHHHHhcCCCCeEEEeccCC---------------hHHHHH----HHhhCC
Confidence            5543 32          48999999999999999994344555542210               001111    112222


Q ss_pred             CcceeeecCCCCCCCChHHHHHHHHcCCeEEEEeCCCC
Q 020686          285 WKDTVVPVANNYSQTPTDLVARAHALDLQIHIGNTTTG  322 (322)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~v~~ah~~Gl~V~vWTvn~~  322 (322)
                      .  .+.+   ++.. . ..++.+|++|++|++||||+|
T Consensus       180 ~--~~~~---~~~~-~-~~v~~~~~~G~~v~vWTVn~~  210 (229)
T cd08581         180 D--YLFC---DKNL-L-PDTGDLWAGTWKWVIYEVNEP  210 (229)
T ss_pred             C--EEec---cccc-C-hhhHHHHhCCceEEEEEcCCH
Confidence            2  2222   2222 2 458899999999999999986

This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity to Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.

>cd08568 GDPD_TmGDE_like Glycerophosphodiester phosphodiesterase domain of Thermotoga maritime and similar proteins

Probab=100.00  E-value=4.5e-43  Score=312.57  Aligned_cols=203  Identities=24%  Similarity=0.281  Sum_probs=157.0

Q ss_pred             eEEeeCCCCCCCchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCCccccCCCCcccccccccccccCCcccccc
Q 020686           45 YNLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVNTTGF  124 (322)
Q Consensus        45 ~iiaHRG~~~~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~~~~~g~~~~g~  124 (322)
                      ++|||||+++.+||||++||++|++.|+|+||+|||+||||++||+||.+++|+|++.                    | 
T Consensus         1 ~iiaHRG~~~~~pENTl~af~~A~~~Gad~iE~DV~lT~Dg~~Vv~HD~~l~R~t~~~--------------------g-   59 (226)
T cd08568           1 IILGHRGYRAKYPENTLEAFKKAIEYGADGVELDVWLTKDGKLVVLHDENLKRVGGVD--------------------L-   59 (226)
T ss_pred             CEEeccCCCCCCCcchHHHHHHHHHcCcCEEEEEEEEcCCCCEEEECCCcccccCCCC--------------------c-
Confidence            4799999999999999999999999999999999999999999999999999999987                    4 


Q ss_pred             eeeccCHHHHccCcccccccCCCcccCCCccccCHHHHHHHHHhcCCcceEeeeeCCcccccccccccCcchHHHHHHHH
Q 020686          125 FVVDFTLEELKTLRAKQRYSFRDQQYNGKFPIITFEEYISIALDAQRVVGIYPEMKNPVFINQHVKWADGKKFEDKFVDT  204 (322)
Q Consensus       125 ~i~~~t~~el~~l~~~~~~~~r~~~~~~~~~iptL~e~l~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~~~~~v~~~  204 (322)
                      .|.++|++||++++.+            ++++|||+|+|+.+.+   ...++||+|.+             ..++.++++
T Consensus        60 ~v~~~t~~eL~~l~~~------------g~~iPtL~evl~~~~~---~~~l~iEiK~~-------------~~~~~~~~~  111 (226)
T cd08568          60 KVKELTYKELKKLHPG------------GELIPTLEEVFRALPN---DAIINVEIKDI-------------DAVEPVLEI  111 (226)
T ss_pred             eeecCCHHHHhhCCCC------------CCcCCCHHHHHHhcCC---CcEEEEEECCc-------------cHHHHHHHH
Confidence            7999999999999874            2589999999998843   36899999963             246789999


Q ss_pred             HHHcCCCCccccccccCCCEEEeccChhHHHHHhhcCCCCeE-EEEeccCccCCCCcccccccccHHHHHHHHh-hcccc
Q 020686          205 LKKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTDSPKI-FLIDDVDILTEDTNQSYSEITSDAYLNYIKE-YCVGI  282 (322)
Q Consensus       205 l~~~~~~~~~~~~~~~~~rv~i~Sf~~~~l~~~~~~~~~~~v-~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~i  282 (322)
                      ++++++.+          +++++||+++.|+++|++.|...+ ++......     .  +   .   ..+.... .+..+
T Consensus       112 l~~~~~~~----------~v~i~SF~~~~l~~~~~~~p~~~~~~l~~~~~~-----~--~---~---~~~~~~~~~~~~~  168 (226)
T cd08568         112 VEKFNALD----------RVIFSSFNHDALRELRKLDPDAKVGLLIGEEEE-----G--F---S---IPELHEKLKLYSL  168 (226)
T ss_pred             HHHcCCCC----------cEEEEECCHHHHHHHHHhCCCCcEEEEeecccc-----c--c---C---HHHHHHhcCCcEe
Confidence            99998754          899999999999999999776444 44432210     0  0   0   0111111 12223


Q ss_pred             CCCcceeeecCCCCCCCChHHHHHHHHcCCeEEEEeCCCC
Q 020686          283 GPWKDTVVPVANNYSQTPTDLVARAHALDLQIHIGNTTTG  322 (322)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~v~~ah~~Gl~V~vWTvn~~  322 (322)
                      .+....+ .  ......++++++.+|++|++|++||||++
T Consensus       169 ~~~~~~~-~--~~~~~~~~~~v~~~~~~G~~v~~WTvn~~  205 (226)
T cd08568         169 HVPIDAI-G--YIGFEKFVELLRLLRKLGLKIVLWTVNDP  205 (226)
T ss_pred             ccchhhh-c--cccccccHHHHHHHHHCCCEEEEEcCCCH
Confidence            3221111 0  00122369999999999999999999985

This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermotoga maritime glycerophosphodiester phosphodiesterase (TmGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. TmGDE exists as a monomer that might be the biologically relevant form.

>cd08610 GDPD_GDE6 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE6 and similar proteins

Probab=100.00  E-value=6.4e-43  Score=323.61  Aligned_cols=224  Identities=18%  Similarity=0.222  Sum_probs=168.0

Q ss_pred             CCCCCCeEEeeCCCCCCCchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCCccccCCCCcccccccccccccCC
Q 020686           39 LQTSRPYNLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQG  118 (322)
Q Consensus        39 ~~~~~p~iiaHRG~~~~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~~~~~g  118 (322)
                      ..+++|.+|||||+++.+||||++||++|++.|+|+||+|||+||||++||+||.+++|+|++..  .++.+++      
T Consensus        18 ~~~~~~~IiAHRGa~~~aPENTl~AF~~A~~~Gad~IE~DV~lTkDG~lVV~HD~tL~Rtt~~~~--~~~~~~~------   89 (316)
T cd08610          18 TLGPKPTIIGHRGAPMLAPENTMMSFEKAIEHGAHGLETDVTLSYDGVPFLMHDFTLKRTTNIGE--VQPESAC------   89 (316)
T ss_pred             ccCCCCeEEECCCCCCCCCccHHHHHHHHHHcCCCEEEEEEEEccCCCEEEeCCCccccccCCCC--ccccccc------
Confidence            44677899999999999999999999999999999999999999999999999999999999863  2443322      


Q ss_pred             cccccceeeccCHHHHccCcccccccCC------------C-cccCCCccccCHHHHHHHHHhcCCcceEeeeeCCcccc
Q 020686          119 VNTTGFFVVDFTLEELKTLRAKQRYSFR------------D-QQYNGKFPIITFEEYISIALDAQRVVGIYPEMKNPVFI  185 (322)
Q Consensus       119 ~~~~g~~i~~~t~~el~~l~~~~~~~~r------------~-~~~~~~~~iptL~e~l~~~~~~~~~~~l~iEiK~~~~~  185 (322)
                          | .+.++|++||++++++.||...            . ..+.+ ++||||+|+|+.+++.+  ..++||||.+...
T Consensus        90 ----~-~V~~~TlaEL~~ld~g~wf~~~~~~~~~~~~~~~~~~~~~~-e~IPTLeEvL~~~~~~~--~~l~IEIK~~~~~  161 (316)
T cd08610          90 ----E-NPAFFNWDFLSTLNAGKWFVKPRPFYNMKPLSEADKERARN-QSIPKLSNFLRLAEKEN--KLVIFDLYRPPPK  161 (316)
T ss_pred             ----c-chhhCCHHHHhhCCCCCccCcccccccccccccccccccCC-CCCCCHHHHHHHhHhcC--ceEEEEeCCCccc
Confidence                3 6999999999999999876311            1 12233 69999999999997543  7899999965311


Q ss_pred             cccccccCcchHHHHHHHHH-HHcCCCCccccccccCCCEEEeccChhHHHHHhhcCCCCeEEEEeccCccCCCCccccc
Q 020686          186 NQHVKWADGKKFEDKFVDTL-KKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTDSPKIFLIDDVDILTEDTNQSYS  264 (322)
Q Consensus       186 ~~~~~~~~~~~~~~~v~~~l-~~~~~~~~~~~~~~~~~rv~i~Sf~~~~l~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~  264 (322)
                      .     +....+++.+++.+ +++++..          ++++ ||+...++++++..|.....+....            
T Consensus       162 ~-----~~~~~~~~~v~~~i~~~~~~~~----------~~v~-sf~~~~l~~~~~~~P~~~~~l~~~~------------  213 (316)
T cd08610         162 H-----PYRHTWIRRVLEVILNEVGIEQ----------HLVL-WLPAHDRQYVQSVAPGFKQHVGRKV------------  213 (316)
T ss_pred             C-----cchhHHHHHHHHHHHHHcCCCC----------CEEE-EcCHHHHHHHHHHCcchhhhhcccc------------
Confidence            1     01124778888886 6778753          5666 5889999999998776443221100            


Q ss_pred             ccccHHHHHHHHh-hccccCCCcceeeecCCCCCCCChHHHHHHHHcCCeEEEEeCCCC
Q 020686          265 EITSDAYLNYIKE-YCVGIGPWKDTVVPVANNYSQTPTDLVARAHALDLQIHIGNTTTG  322 (322)
Q Consensus       265 ~~~~~~~l~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~v~~ah~~Gl~V~vWTvn~~  322 (322)
                         .   ...+.. .+.+       +.+   ++..+++++|+.+|++|++|++||||+|
T Consensus       214 ---~---~~~l~~~~~~~-------l~~---~~~~l~~~~v~~a~~~Gl~V~vWTVNd~  256 (316)
T cd08610         214 ---P---IETLLKNNISI-------LNL---AYKKLFSNDIRDYKAANIHTNVYVINEP  256 (316)
T ss_pred             ---c---HHHHHHcCCeE-------Ecc---chhhCCHHHHHHHHHCCCEEEEECCCCH
Confidence               0   111211 1222       222   5667799999999999999999999986

This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE6 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 4 (GDPD4)) and their metazoan homologs. Mammalian GDE6 is a transmembrane protein predominantly expressed in the spermatocytes of testis. Although the specific physiological function of mammalian GDE6 has not been elucidated, its different pattern of tissue distribution suggests it might play a critical role in the completion of meiosis during male germ cell differentiation.

>cd08609 GDPD_GDE3 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE3 and similar proteins

Probab=100.00  E-value=9e-43  Score=322.75  Aligned_cols=218  Identities=21%  Similarity=0.211  Sum_probs=163.1

Q ss_pred             CCeEEeeCCCCCCCchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCCccccCCCCcccccccccccccCCcccc
Q 020686           43 RPYNLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVNTT  122 (322)
Q Consensus        43 ~p~iiaHRG~~~~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~~~~~g~~~~  122 (322)
                      .|.||||||+++.+||||++||++|++.|+|+||+|||+||||++||+||.+|+|+|++..  .++++.           
T Consensus        26 ~~~IIAHRGas~~aPENTl~AF~~Ai~~GaD~IE~DV~lTkDG~lVV~HD~tL~Rtt~~~g--~~~~~~-----------   92 (315)
T cd08609          26 KPALVGHRGAPMLAPENTLMSLRKSLECGVVVFETDVMVSKDGVPFLMHDEGLLRTTNVKD--VFPGRD-----------   92 (315)
T ss_pred             CCeEEECCCCCCCCCccHHHHHHHHHHcCCCEEEEEEEECCCCCEEEeCCCcccccCCCCC--Cccccc-----------
Confidence            5799999999999999999999999999999999999999999999999999999999862  010000           


Q ss_pred             cceeeccCHHHHccCcccccccCCCc-------------ccCCCccccCHHHHHHHHHhcCCcceEeeeeCCcccccccc
Q 020686          123 GFFVVDFTLEELKTLRAKQRYSFRDQ-------------QYNGKFPIITFEEYISIALDAQRVVGIYPEMKNPVFINQHV  189 (322)
Q Consensus       123 g~~i~~~t~~el~~l~~~~~~~~r~~-------------~~~~~~~iptL~e~l~~~~~~~~~~~l~iEiK~~~~~~~~~  189 (322)
                      .+.|.++|++||++++++.||..+.+             .+. +++||||+|+|+.+++++  +.++||||.+....   
T Consensus        93 ~~~V~dlTlaEL~~ld~g~wf~~~~~~~~~~~~~~~~~~~~~-ge~IPTL~EvL~~~~~~~--~~l~IEIK~~~~~~---  166 (315)
T cd08609          93 AAGSNNFTWTELKTLNAGSWFLERRPFWTLSSLSEEDRREAD-NQTVPSLSELLDLAKKHN--VSIMFDLRNENNSH---  166 (315)
T ss_pred             cccHhhCCHHHHhhCCCCcccCcccccccccccccccccccC-CCCCCCHHHHHHHHHhcC--CEEEEEeCCCCCCC---
Confidence            01499999999999999987643211             123 369999999999997644  77999999753100   


Q ss_pred             cccCcchHHHHHHHHHHHcCCCCccccccccCCCEEEeccChhHHHHHhhcCCCCeEEEEeccCccCCCCcccccccccH
Q 020686          190 KWADGKKFEDKFVDTLKKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTDSPKIFLIDDVDILTEDTNQSYSEITSD  269 (322)
Q Consensus       190 ~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~rv~i~Sf~~~~l~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~  269 (322)
                        .....+++.+++.++++++..         +++++  |+...+++++++.|.....+...                  
T Consensus       167 --~~~~~f~~~vl~~i~~~~~~~---------~~v~~--~~~~~l~~~~~~~P~~~~~~~~~------------------  215 (315)
T cd08609         167 --VFYSSFVFYTLETILKLGIPP---------DKVWW--LPDEYRHDVMKMEPGFKQVYGRQ------------------  215 (315)
T ss_pred             --ccHHHHHHHHHHHHHHcCCCc---------ceEEE--eCHHHHHHHHHhCcCceeecccc------------------
Confidence              012468899999999998753         24443  46888999999877554422100                  


Q ss_pred             HHHHHHHhhccccCCCcceeeecCCCCCCCChHHHHHHHHcCCeEEEEeCCCC
Q 020686          270 AYLNYIKEYCVGIGPWKDTVVPVANNYSQTPTDLVARAHALDLQIHIGNTTTG  322 (322)
Q Consensus       270 ~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~ah~~Gl~V~vWTvn~~  322 (322)
                        .......+..+++          ++..+++++|+.+|++|++|++||||+|
T Consensus       216 --~~~~~~~~~~i~~----------~~~~l~~~~v~~~~~~G~~v~vWTVNd~  256 (315)
T cd08609         216 --KEMLMDGGNFMNL----------PYQDLSALEIKELRKDNVSVNLWVVNEP  256 (315)
T ss_pred             --hhhHhcCCeEEec----------ccccCCHHHHHHHHHCCCEEEEECCCCH
Confidence              0001111222222          4667799999999999999999999986

This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE3 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 2 (GDPD2), Osteoblast differentiation promoting factor) and their metazoan homologs. Mammalian GDE3 is a transmembrane protein specifically expressed in bone tissues and spleen. It is a mammalian homolog of bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyzes the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Mammalian GDE3 has been characterized as glycerophosphoinositol inositolphosphodiesterase (EC 3.1.4.43) that selectively hydrolyzes extracellular glycerophosphoinositol (GPI) to generate inositol 1-phosphate (Ins1P) and glycerol. Mammalia

>cd08563 GDPD_TtGDE_like Glycerophosphodiester phosphodiesterase domain of Thermoanaerobacter tengcongensis and similar proteins

Probab=100.00  E-value=2e-42  Score=309.20  Aligned_cols=210  Identities=29%  Similarity=0.421  Sum_probs=167.4

Q ss_pred             CeEEeeCCCCCCCchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCCccccCCCCcccccccccccccCCccccc
Q 020686           44 PYNLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVNTTG  123 (322)
Q Consensus        44 p~iiaHRG~~~~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~~~~~g~~~~g  123 (322)
                      .+||||||+++.+||||++||++|++.|+++||||||+||||++||+||.++.|+|++.                    |
T Consensus         1 ~~iiaHRG~~~~~pENT~~Af~~A~~~g~~~vE~DV~~TkDg~~Vv~HD~~l~r~t~~~--------------------~   60 (230)
T cd08563           1 TLIFAHRGYSGTAPENTLLAFKKAIEAGADGIELDVHLTKDGQLVVIHDETVDRTTNGK--------------------G   60 (230)
T ss_pred             CeEEEccCCCCCCCchhHHHHHHHHHcCCCEEEEEeeEcCCCCEEEECCCCcccccCCC--------------------C
Confidence            36899999999999999999999999999999999999999999999999999999987                    4


Q ss_pred             ceeeccCHHHHccCcccccccCCCcccCCCccccCHHHHHHHHHhcCCcceEeeeeCCcccccccccccCcchHHHHHHH
Q 020686          124 FFVVDFTLEELKTLRAKQRYSFRDQQYNGKFPIITFEEYISIALDAQRVVGIYPEMKNPVFINQHVKWADGKKFEDKFVD  203 (322)
Q Consensus       124 ~~i~~~t~~el~~l~~~~~~~~r~~~~~~~~~iptL~e~l~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~~~~~v~~  203 (322)
                       .|.++|++||++++.+.++.   ..+. ..++|||+|+|+.+++.  .+.+++|+|.+..        ....+++.+++
T Consensus        61 -~i~~~t~~el~~l~~~~~~~---~~~~-~~~iptL~evl~~~~~~--~~~l~leiK~~~~--------~~~~~~~~l~~  125 (230)
T cd08563          61 -YVKDLTLEELKKLDAGSWFD---EKFT-GEKIPTLEEVLDLLKDK--DLLLNIEIKTDVI--------HYPGIEKKVLE  125 (230)
T ss_pred             -chhhCCHHHHHhcCCCCccC---ccCC-CCcCCCHHHHHHHHHhc--CcEEEEEECCCCC--------cChhHHHHHHH
Confidence             79999999999999887643   2233 35899999999999753  4899999997642        11357899999


Q ss_pred             HHHHcCCCCccccccccCCCEEEeccChhHHHHHhhcCCCCeEEEEeccCccCCCCcccccccccHHHHHHHHhh-cccc
Q 020686          204 TLKKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTDSPKIFLIDDVDILTEDTNQSYSEITSDAYLNYIKEY-CVGI  282 (322)
Q Consensus       204 ~l~~~~~~~~~~~~~~~~~rv~i~Sf~~~~l~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~i  282 (322)
                      +++++++.+          +++++||+++.+.++++..|...+.++......              ...+.+... +.++
T Consensus       126 ~l~~~~~~~----------~v~~~Sf~~~~l~~~~~~~p~~~~~~l~~~~~~--------------~~~~~~~~~~~~~v  181 (230)
T cd08563         126 LVKEYNLED----------RVIFSSFNHESLKRLKKLDPKIKLALLYETGLQ--------------DPKDYAKKIGADSL  181 (230)
T ss_pred             HHHHcCCCC----------CEEEEcCCHHHHHHHHHHCCCCcEEEEecCccc--------------CHHHHHHHhCCEEE
Confidence            999998754          899999999999999998876444443322110              011222221 1222


Q ss_pred             CCCcceeeecCCCCCCCChHHHHHHHHcCCeEEEEeCCCC
Q 020686          283 GPWKDTVVPVANNYSQTPTDLVARAHALDLQIHIGNTTTG  322 (322)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~v~~ah~~Gl~V~vWTvn~~  322 (322)
                      .+          ++..+++++++.+|++|++|++||||++
T Consensus       182 ~~----------~~~~~~~~~i~~~~~~g~~v~~Wtvn~~  211 (230)
T cd08563         182 HP----------DFKLLTEEVVEELKKRGIPVRLWTVNEE  211 (230)
T ss_pred             cc----------CchhcCHHHHHHHHHCCCEEEEEecCCH
Confidence            22          4556799999999999999999999985

This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermoanaerobacter tengcongensis glycerophosphodiester phosphodiesterase (TtGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Despite the fact that most of GDPD family members exist as the monomer, TtGDE can function as a dimeric unit. Its catalytic mechanism is based on the general base-acid catalysis, which is similar to that of phosphoinositide-specific phospholipases C (PI-PLCs, EC 3.1.4.11). A divalent metal cation is required for the enzyme activity of TtGDE.

>cd08608 GDPD_GDE2 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE2 and similar proteins

Probab=100.00  E-value=1.2e-42  Score=325.09  Aligned_cols=220  Identities=17%  Similarity=0.201  Sum_probs=164.0

Q ss_pred             CCeEEeeCCCCCCCchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCCccccCCCCcccccccccccccCCcccc
Q 020686           43 RPYNLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVNTT  122 (322)
Q Consensus        43 ~p~iiaHRG~~~~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~~~~~g~~~~  122 (322)
                      +|.+|||||+++.+||||++||++|++.|+|+||+|||+||||+|||+||.+|+|+|++..  .++.++.          
T Consensus         1 ~p~IIAHRGas~~aPENTL~AF~~A~~~GaD~IElDV~lTkDGvlVV~HD~tL~RtTn~~g--~v~~~~~----------   68 (351)
T cd08608           1 KPAIIGHRGAPMLAPENTLMSFQKALEQKVYGLQADVTISLDGVPFLMHDRTLRRTTNVDR--VFPERQY----------   68 (351)
T ss_pred             CCeEEEcCCCCCCCCcchHHHHHHHHHcCCCEEEEEeeEccCCcEEEECCCccccccCCCC--ccccccc----------
Confidence            4789999999999999999999999999999999999999999999999999999999873  1111110          


Q ss_pred             cceeeccCHHHHccCcccccccCCCc-------------ccCCCccccCHHHHHHHHHhcCCcceEeeeeCCcccccccc
Q 020686          123 GFFVVDFTLEELKTLRAKQRYSFRDQ-------------QYNGKFPIITFEEYISIALDAQRVVGIYPEMKNPVFINQHV  189 (322)
Q Consensus       123 g~~i~~~t~~el~~l~~~~~~~~r~~-------------~~~~~~~iptL~e~l~~~~~~~~~~~l~iEiK~~~~~~~~~  189 (322)
                       ..++++||+||++|+++.|+..+++             .+. +++||||+|+|+.+++.+  ..+++|||.+....   
T Consensus        69 -~~~~~~TlaEL~~LdaG~wf~~~~p~~~~~~~~~~~~~~~~-ge~IPTL~EvL~~~~~~~--~~l~iEIK~~~~~~---  141 (351)
T cd08608          69 -EDASMFNWTDLERLNAGQWFLKDDPFWTAQSLSPSDRKEAG-NQSVCSLAELLELAKRYN--ASVLLNLRRPPPNH---  141 (351)
T ss_pred             -cccccCCHHHHhhCCCCcccccCCccccccccccccccccC-CCCCCCHHHHHHHHHhcC--CeEEEEECCCcccC---
Confidence             1357899999999999987632211             233 369999999999997644  67999999753110   


Q ss_pred             cccCcchHHHHHHHHHHHcCCCCccccccccCCCEEEeccChhHHHHHhhcCCCCeEEEEeccCccCCCCcccccccccH
Q 020686          190 KWADGKKFEDKFVDTLKKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTDSPKIFLIDDVDILTEDTNQSYSEITSD  269 (322)
Q Consensus       190 ~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~rv~i~Sf~~~~l~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~  269 (322)
                        +....+++.+++++.++++..         ++++++||+.  ++++|++.|....... ..                 
T Consensus       142 --~~~~~~~~~v~~~i~~~~~~~---------~~vi~sSf~~--~~~vr~l~P~~~~~~~-~~-----------------  190 (351)
T cd08608         142 --PYHQSWINLTLKTILASGIPQ---------EQVMWTPDWQ--RKLVRKVAPGFQQTSG-EK-----------------  190 (351)
T ss_pred             --cchhHHHHHHHHHHHHhCCCc---------CeEEEEcchH--HHHHHHHCCCCeeecc-cc-----------------
Confidence              122467889999999998753         3788888876  4789988776443210 00                 


Q ss_pred             HHHHHHHh-hccccCCCcceeeecCCCCCCCChHHHHHHHHcCCeEEEEeCCCC
Q 020686          270 AYLNYIKE-YCVGIGPWKDTVVPVANNYSQTPTDLVARAHALDLQIHIGNTTTG  322 (322)
Q Consensus       270 ~~l~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~v~~ah~~Gl~V~vWTvn~~  322 (322)
                      .....++. .+..       +.+   ++..+++++|+.+|++|++|++||||+|
T Consensus       191 ~~~~~~~~~~~~~-------l~~---~~~~lt~~~v~~~~~~Gl~V~vWTVN~~  234 (351)
T cd08608         191 LPVASLRERGITR-------LNL---RYTQASAQEIRDYSASNLSVNLYTVNEP  234 (351)
T ss_pred             chHHHHHHcCCeE-------Ecc---chhhcCHHHHHHHHHCCCEEEEEecCCH
Confidence            01112221 1222       222   5667899999999999999999999986

This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE2 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 5 (GDPD5)) and their metazoan homologs. Mammalian GDE2 is transmembrane protein primarily expressed in mature neurons. It is a mammalian homolog of bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Mammalian GDE2 selectively hydrolyzes glycerophosphocholine (GPC) and has been characterized as GPC-GDE (EC 3.1.4.2) that contributes to osmotic regulation of cellular GPC. Mammalian GDE2 functions in a complex with an antioxidant scavenger peroxiredoxin1 (Prdx1) to control motor neuron differenti

>cd08582 GDPD_like_2 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases

Probab=100.00  E-value=2.4e-42  Score=309.29  Aligned_cols=210  Identities=29%  Similarity=0.419  Sum_probs=164.9

Q ss_pred             EEeeCCCCCCCchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCCccccCCCCcccccccccccccCCcccccce
Q 020686           46 NLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVNTTGFF  125 (322)
Q Consensus        46 iiaHRG~~~~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~~~~~g~~~~g~~  125 (322)
                      ||||||+++.+||||++||++|++.|+++||+||++||||++||+||.+++|+|++.                    | .
T Consensus         1 iiaHRG~~~~~pENTl~af~~A~~~G~~~vE~Dv~lTkDg~~Vv~HD~~l~r~t~~~--------------------~-~   59 (233)
T cd08582           1 VIAHRGASAEAPENTLAAFELAWEQGADGIETDVRLTKDGELVCVHDPTLKRTSGGD--------------------G-A   59 (233)
T ss_pred             CEeCCCCCCCCCchHHHHHHHHHHcCCCEEEEEEEEccCCCEEEecCCccccccCCC--------------------c-c
Confidence            589999999999999999999999999999999999999999999999999999987                    4 7


Q ss_pred             eeccCHHHHccCcccccccCCCcccCCCccccCHHHHHHHHHhcCCcceEeeeeCCcccccccccccCcchHHHHHHHHH
Q 020686          126 VVDFTLEELKTLRAKQRYSFRDQQYNGKFPIITFEEYISIALDAQRVVGIYPEMKNPVFINQHVKWADGKKFEDKFVDTL  205 (322)
Q Consensus       126 i~~~t~~el~~l~~~~~~~~r~~~~~~~~~iptL~e~l~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~~~~~v~~~l  205 (322)
                      |.++|++||++++.+.++.   ..+.+ +++|||+|+|+.++++  .+.++||+|.+.         ....+++.+++++
T Consensus        60 i~~~t~~el~~l~~~~~~~---~~~~~-~~iptL~evl~~~~~~--~~~l~ieiK~~~---------~~~~~~~~~~~~~  124 (233)
T cd08582          60 VSDLTLAELRKLDIGSWKG---ESYKG-EKVPTLEEYLAIVPKY--GKKLFIEIKHPR---------RGPEAEEELLKLL  124 (233)
T ss_pred             hhhCCHHHHhcCCCCcccC---CCCCC-CcCCCHHHHHHHHHhc--CceEEEEeCCCc---------cCccHHHHHHHHH
Confidence            9999999999999886543   23333 6999999999999865  388999999751         2346889999999


Q ss_pred             HHcCCCCccccccccCCCEEEeccChhHHHHHhhcCCCCeEEEEeccCccCCCCcccccccccHHHHHHHH-hhccccCC
Q 020686          206 KKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTDSPKIFLIDDVDILTEDTNQSYSEITSDAYLNYIK-EYCVGIGP  284 (322)
Q Consensus       206 ~~~~~~~~~~~~~~~~~rv~i~Sf~~~~l~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~i~~  284 (322)
                      ++++...         ++++++||++.++++++++.|...++++......   ..      ..   ...+. ..+.++.+
T Consensus       125 ~~~~~~~---------~~v~~~Sf~~~~l~~~~~~~p~~~~~~l~~~~~~---~~------~~---~~~~~~~~~~~i~~  183 (233)
T cd08582         125 KESGLLP---------EQIVIISFDAEALKRVRELAPTLETLWLRNYKSP---KE------DP---RPLAKSGGAAGLDL  183 (233)
T ss_pred             HHcCCCC---------CCEEEEecCHHHHHHHHHHCCCCcEEEEeccCcc---cc------ch---hHHHHhhCceEEcc
Confidence            9995432         4999999999999999998776444443322110   00      00   00111 12223333


Q ss_pred             CcceeeecCCCCCC-CChHHHHHHHHcCCeEEEEeCCCC
Q 020686          285 WKDTVVPVANNYSQ-TPTDLVARAHALDLQIHIGNTTTG  322 (322)
Q Consensus       285 ~~~~~~~~~~~~~~-~~~~~v~~ah~~Gl~V~vWTvn~~  322 (322)
                                ++.. .++++++.+|++|++|++||||++
T Consensus       184 ----------~~~~~~~~~~v~~~~~~G~~v~~wTvn~~  212 (233)
T cd08582         184 ----------SYEKKLNPAFIKALRDAGLKLNVWTVDDA  212 (233)
T ss_pred             ----------cccccCCHHHHHHHHHCCCEEEEEeCCCH
Confidence                      2333 799999999999999999999985

This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity to Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.

>cd08579 GDPD_memb_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases

Probab=100.00  E-value=9e-43  Score=309.39  Aligned_cols=201  Identities=24%  Similarity=0.286  Sum_probs=162.1

Q ss_pred             EEeeCCCCCCCchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCCccccCCCCcccccccccccccCCcccccce
Q 020686           46 NLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVNTTGFF  125 (322)
Q Consensus        46 iiaHRG~~~~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~~~~~g~~~~g~~  125 (322)
                      ||||||+++.+||||++||++|++.|+|+||+||++||||++||+||.++.|+|++.                    | .
T Consensus         1 iiaHRG~~~~~pENT~~af~~A~~~Gad~vE~DV~~T~Dg~~vv~HD~~l~r~t~~~--------------------~-~   59 (220)
T cd08579           1 IIAHRGVSSNGVENTLEALEAAIKAKPDYVEIDVQETKDGQFVVMHDANLKRLAGVN--------------------K-K   59 (220)
T ss_pred             CeeccCCCCCCCccHHHHHHHHHHcCCCEEEEEeeEcCCCCEEEEcCCchhhccCCC--------------------C-C
Confidence            589999999999999999999999999999999999999999999999999999987                    3 7


Q ss_pred             eeccCHHHHccCcccccccCCCcccCCCccccCHHHHHHHHHhcCCcceEeeeeCCcccccccccccCcchHHHHHHHHH
Q 020686          126 VVDFTLEELKTLRAKQRYSFRDQQYNGKFPIITFEEYISIALDAQRVVGIYPEMKNPVFINQHVKWADGKKFEDKFVDTL  205 (322)
Q Consensus       126 i~~~t~~el~~l~~~~~~~~r~~~~~~~~~iptL~e~l~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~~~~~v~~~l  205 (322)
                      |.++|++||++++.+.+       +.+ .++|||+|+|+.++++  .+.++||+|.+..        ....+++.+++++
T Consensus        60 v~~~t~~el~~l~~~~~-------~~~-~~iptL~evl~~~~~~--~~~l~iEiK~~~~--------~~~~~~~~v~~~l  121 (220)
T cd08579          60 VWDLTLEELKKLTIGEN-------GHG-AKIPSLDEYLALAKGL--KQKLLIELKPHGH--------DSPDLVEKFVKLY  121 (220)
T ss_pred             hhhCCHHHHhcCcCccC-------CCC-CcCCCHHHHHHHhhcc--CCeEEEEECCCCC--------CCHHHHHHHHHHH
Confidence            99999999999998754       223 5899999999999754  3789999998642        2346889999999


Q ss_pred             HHcCCCCccccccccCCCEEEeccChhHHHHHhhcCCCCeEEEEeccCccCCCCcccccccccHHHHHHHHhhccccCCC
Q 020686          206 KKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTDSPKIFLIDDVDILTEDTNQSYSEITSDAYLNYIKEYCVGIGPW  285 (322)
Q Consensus       206 ~~~~~~~~~~~~~~~~~rv~i~Sf~~~~l~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~  285 (322)
                      +++++..          +++|+||+++.++++++..|...+.++.....         ..      ..  ...+..+++ 
T Consensus       122 ~~~~~~~----------~v~v~Sf~~~~l~~~~~~~p~~~~~~~~~~~~---------~~------~~--~~~~~~~~~-  173 (220)
T cd08579         122 KQNLIEN----------QHQVHSLDYRVIEKVKKLDPKIKTGYILPFNI---------GN------LP--KTNVDFYSI-  173 (220)
T ss_pred             HHcCCCc----------CeEEEeCCHHHHHHHHHHCCCCeEEEEEeccc---------Cc------cc--ccCceEEee-
Confidence            9998764          89999999999999999876544433322111         00      00  011111211 


Q ss_pred             cceeeecCCCCCCCChHHHHHHHHcCCeEEEEeCCCC
Q 020686          286 KDTVVPVANNYSQTPTDLVARAHALDLQIHIGNTTTG  322 (322)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~v~~ah~~Gl~V~vWTvn~~  322 (322)
                               ++..+++++++.+|++|++|++||||+|
T Consensus       174 ---------~~~~~~~~~v~~~~~~G~~v~~wtvn~~  201 (220)
T cd08579         174 ---------EYSTLNKEFIRQAHQNGKKVYVWTVNDP  201 (220)
T ss_pred             ---------ehhhcCHHHHHHHHHCCCEEEEEcCCCH
Confidence                     3456789999999999999999999985

This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial glycerophosphodiester phosphodiesterases. In addition to a C-terminal GDPD domain, most members in this family have an N-terminus that functions as a membrane anchor.

>cd08565 GDPD_pAtGDE_like Glycerophosphodiester phosphodiesterase domain of putative Agrobacterium tumefaciens glycerophosphodiester phosphodiesterase and similar proteins

Probab=100.00  E-value=1.9e-42  Score=310.02  Aligned_cols=210  Identities=22%  Similarity=0.245  Sum_probs=159.7

Q ss_pred             EEeeCCCCCCCchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCCccccCCCCcccccccccccccCCcccccce
Q 020686           46 NLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVNTTGFF  125 (322)
Q Consensus        46 iiaHRG~~~~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~~~~~g~~~~g~~  125 (322)
                      ||||||+++.+||||++||++|++.|+|+||+|||+||||++||+||.+++|+|++.                    | .
T Consensus         1 iiaHRG~~~~~pENTl~af~~A~~~G~d~iE~DV~~TkDg~~Vv~HD~~l~r~t~~~--------------------g-~   59 (235)
T cd08565           1 IAGHRGGRNLWPENTLEGFRKALELGVDAVEFDVHLTADGEVVVIHDPTLDRTTHGT--------------------G-A   59 (235)
T ss_pred             CEecCCCCCCCCccHHHHHHHHHHcCCCEEEEeEEEccCCCEEEECCChhhcccCCC--------------------C-c
Confidence            589999999999999999999999999999999999999999999999999999987                    4 6


Q ss_pred             eeccCHHHHccCcccccccCCCcccCCCccccCHHHHHHHHHhcCCcceEeeeeCCcccccccccccCcchHHHHHHHHH
Q 020686          126 VVDFTLEELKTLRAKQRYSFRDQQYNGKFPIITFEEYISIALDAQRVVGIYPEMKNPVFINQHVKWADGKKFEDKFVDTL  205 (322)
Q Consensus       126 i~~~t~~el~~l~~~~~~~~r~~~~~~~~~iptL~e~l~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~~~~~v~~~l  205 (322)
                      |.++|++||++|+++.++         ++++|||+|+|+.++.  ..+.++||+|.+....      ....+++.+++++
T Consensus        60 v~~~t~~el~~l~~~~~~---------~~~iptL~evl~~~~~--~~~~l~iEiK~~~~~~------~~~~~~~~v~~~i  122 (235)
T cd08565          60 VRDLTLAERKALRLRDSF---------GEKIPTLEEVLALFAP--SGLELHVEIKTDADGT------PYPGAAALAAATL  122 (235)
T ss_pred             eeeccHHHHhcCCCCCCC---------CCCCCCHHHHHHHhhc--cCcEEEEEECCCCCCC------ccHHHHHHHHHHH
Confidence            999999999999987532         2589999999999874  3488999999753110      1246889999999


Q ss_pred             HHcCCCCccccccccCCCEEEeccChhHHHHHhhcCCCCe-EEEEeccCccCCCCcccccccccHHHHHHHH-hhccccC
Q 020686          206 KKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTDSPK-IFLIDDVDILTEDTNQSYSEITSDAYLNYIK-EYCVGIG  283 (322)
Q Consensus       206 ~~~~~~~~~~~~~~~~~rv~i~Sf~~~~l~~~~~~~~~~~-v~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~i~  283 (322)
                      +++++..          +++|+||++++|+++|++ |... .+++......   .   ......   ..... ..+..++
T Consensus       123 ~~~~~~~----------~v~~~Sf~~~~l~~~~~~-p~~~~~~l~~~~~~~---~---~~~~~~---~~~~~~~~~~~~~  182 (235)
T cd08565         123 RRHGLLE----------RSVLTSFDPAVLTEVRKH-PGVRTLGSVDEDMLE---R---LGGELP---FLTATALKAHIVA  182 (235)
T ss_pred             HhCCCcC----------CEEEEECCHHHHHHHHhC-CCCcEEEEecccccc---c---cccccc---hhhhhhccCcEEc
Confidence            9999864          899999999999999999 7644 4444321100   0   000000   00111 1121122


Q ss_pred             CCcceeeecCCCCCCCChHHHHHHHHcCCeEEEEeCCCC
Q 020686          284 PWKDTVVPVANNYSQTPTDLVARAHALDLQIHIGNTTTG  322 (322)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~v~~ah~~Gl~V~vWTvn~~  322 (322)
                      +     .   ..+...++++++.+|+ |++|++||||++
T Consensus       183 ~-----~---~~~~~~~~~~v~~~~~-g~~v~~WTVn~~  212 (235)
T cd08565         183 V-----E---QSLLAATWELVRAAVP-GLRLGVWTVNDD  212 (235)
T ss_pred             c-----C---cccccCCHHHHHHHhC-CCEEEEEccCCH
Confidence            1     1   1223568999999975 999999999985

This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative Agrobacterium tumefaciens glycerophosphodiester phosphodiesterase (pAtGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.

>cd08575 GDPD_GDE4_like Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4-like proteins

Probab=100.00  E-value=3.1e-42  Score=313.81  Aligned_cols=229  Identities=26%  Similarity=0.291  Sum_probs=163.5

Q ss_pred             CeEEeeCCCCCCCchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCCccccCCCCcccccccccccccCCccccc
Q 020686           44 PYNLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVNTTG  123 (322)
Q Consensus        44 p~iiaHRG~~~~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~~~~~g~~~~g  123 (322)
                      |.+|||||+++.+||||++||++|++.|+|+||+|||+||||++||+||.+++|+|++.                    |
T Consensus         1 p~iiaHRG~~~~~pENTl~af~~A~~~G~d~iE~DV~lT~Dg~~Vv~HD~~l~r~t~~~--------------------~   60 (264)
T cd08575           1 PLHIAHRGGAAEFPENTIAAFRHAVKNGADMLELDVQLTKDGQVVVFHDWDLDRLTGGS--------------------G   60 (264)
T ss_pred             CeEEEeCCCCCCCCccHHHHHHHHHHcCCCEEEEEEEECCCCCEEEEcCCcccceeCCc--------------------e
Confidence            78999999999999999999999999999999999999999999999999999999987                    4


Q ss_pred             ceeeccCHHHHccCcccccccCC-----CcccCCCccccCHHHHHHHHHhcCCcceEeeeeCCcccccccccccCcchHH
Q 020686          124 FFVVDFTLEELKTLRAKQRYSFR-----DQQYNGKFPIITFEEYISIALDAQRVVGIYPEMKNPVFINQHVKWADGKKFE  198 (322)
Q Consensus       124 ~~i~~~t~~el~~l~~~~~~~~r-----~~~~~~~~~iptL~e~l~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~~~  198 (322)
                       .|.++|++||++++++.++...     ........++|||+|+|+.+.   . +.++||+|.+..          ..++
T Consensus        61 -~v~~~t~~el~~l~~~~~~~~~~~~~~~~~~~~~~~iptL~evl~~~~---~-~~l~iEiK~~~~----------~~~~  125 (264)
T cd08575          61 -LVSDLTYAELPPLDAGYGYTFDGGKTGYPRGGGDGRIPTLEEVFKAFP---D-TPINIDIKSPDA----------EELI  125 (264)
T ss_pred             -EEecCCHHHHHhcccCCccccCCCCcccccCCCCCcCCcHHHHHHhCC---C-CeEEEEECCCCH----------HHHH
Confidence             7999999999999998765321     111122369999999999873   2 789999997531          4688


Q ss_pred             HHHHHHHHHcCCCCccccccccCCCEEEeccChhHHHHHhhcCCCC-eEEEEeccCccCCCCcccccccccHHHHHHHHh
Q 020686          199 DKFVDTLKKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTDSP-KIFLIDDVDILTEDTNQSYSEITSDAYLNYIKE  277 (322)
Q Consensus       199 ~~v~~~l~~~~~~~~~~~~~~~~~rv~i~Sf~~~~l~~~~~~~~~~-~v~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  277 (322)
                      +.++++++++++..          +++|+||++++|++++++.|.. ..++............  +......   ...+.
T Consensus       126 ~~v~~~i~~~~~~~----------~~~~~Sf~~~~l~~~~~~~p~~~~~~~~~~~~~~~~~~~--~~~~~~~---~~~~~  190 (264)
T cd08575         126 AAVLDLLEKYKRED----------RTVWGSTNPEYLRALHPENPNLFESFSMTRCLLLYLALG--YTGLLPF---VPIKE  190 (264)
T ss_pred             HHHHHHHHhccccc----------eEEEEeCCHHHHHHHHHhCcccccccCchhHHHHHHHhh--eeccCCC---CCCCc
Confidence            99999999998764          8999999999999999987652 2222111000000000  0000000   00000


Q ss_pred             hccccCCCcceee-------ecCCCCCCCChHHHHHHHHcCCeEEEEeCCCC
Q 020686          278 YCVGIGPWKDTVV-------PVANNYSQTPTDLVARAHALDLQIHIGNTTTG  322 (322)
Q Consensus       278 ~~~~i~~~~~~~~-------~~~~~~~~~~~~~v~~ah~~Gl~V~vWTvn~~  322 (322)
                      .+.++......+.       ..+.++...++++|+.+|++|++|++||||++
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G~~v~vWTVNd~  242 (264)
T cd08575         191 SFFEIPRPVIVLETFTLGEGASIVAALLWWPNLFDHLRKRGIQVYLWVLNDE  242 (264)
T ss_pred             eEEEeecccEEEEEeccccccchhhhhhcCHHHHHHHHhcCCcEEEEEECCH
Confidence            0011111000000       00124567899999999999999999999985

This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE4 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 1 (GDPD1)) and similar proteins. Mammalian GDE4 is a transmembrane protein whose cellular function is not elucidated. It is expressed widely, including in placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocytes. It is also expressed in the growth cones in neuroblastoma Neuro2a cells, which suggests mammalian GDE4 may play some distinct role from other members of mammalian GDEs family. Also included in this subfamily are uncharacterized mammalian glycerophosphodiester phosphodiesterase domain-containing protein 3 (GDPD3) and similar proteins which display very high sequence homology to mammalian GDE4.

>cd08567 GDPD_SpGDE_like Glycerophosphodiester phosphodiesterase domain of putative Silicibacter pomeroyi glycerophosphodiester phosphodiesterase and similar proteins

Probab=100.00  E-value=1.4e-41  Score=309.38  Aligned_cols=232  Identities=24%  Similarity=0.322  Sum_probs=166.5

Q ss_pred             eEEeeCCCCCCCchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCCccccCCCCcccccccccccccCCcccccc
Q 020686           45 YNLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVNTTGF  124 (322)
Q Consensus        45 ~iiaHRG~~~~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~~~~~g~~~~g~  124 (322)
                      .||||||+++.+||||++||++|++.|+|+||+|||+||||++||+||.+++|+|+......+...          . +.
T Consensus         2 ~iiaHRG~~~~~pENT~~Af~~A~~~Gad~vE~DV~~TkDg~~Vv~HD~~l~r~~~r~~~~~~~~~----------~-~~   70 (263)
T cd08567           2 DLQGHRGARGLLPENTLPAFAKALDLGVDTLELDLVLTKDGVIVVSHDPKLNPDITRDPDGAWLPY----------E-GP   70 (263)
T ss_pred             ceEeccCCCCCCCcchHHHHHHHHHcCCCEEEEEEEEcCCCCEEEeCCCccCcceeecCCCCcccc----------c-Cc
Confidence            589999999999999999999999999999999999999999999999999987643210011000          0 12


Q ss_pred             eeeccCHHHHccCccccccc-------CCCcccCCCccccCHHHHHHHHHhcC-CcceEeeeeCCcccccccccccCcch
Q 020686          125 FVVDFTLEELKTLRAKQRYS-------FRDQQYNGKFPIITFEEYISIALDAQ-RVVGIYPEMKNPVFINQHVKWADGKK  196 (322)
Q Consensus       125 ~i~~~t~~el~~l~~~~~~~-------~r~~~~~~~~~iptL~e~l~~~~~~~-~~~~l~iEiK~~~~~~~~~~~~~~~~  196 (322)
                      .|+++|++||++++.+.++.       |+.+....++++|||+|+|+.++.++ ..+.++||+|.+...+.  ..+....
T Consensus        71 ~v~~~t~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~iptL~evl~~~~~~~~~~~~l~iEiK~~~~~~~--~~~~~~~  148 (263)
T cd08567          71 ALYELTLAEIKQLDVGEKRPGSDYAKLFPEQIPVPGTRIPTLEEVFALVEKYGNQKVRFNIETKSDPDRDI--LHPPPEE  148 (263)
T ss_pred             chhcCCHHHHHhcCCCccccCcCcccCCCccccCccccCCCHHHHHHHHHHhccCCceEEEEEcCCCCccc--cCccHHH
Confidence            79999999999999886641       11111111258999999999998642 24789999997643210  0112356


Q ss_pred             HHHHHHHHHHHcCCCCccccccccCCCEEEeccChhHHHHHhhcCCCCe-EEEEeccCccCCCCcccccccccHHHHHHH
Q 020686          197 FEDKFVDTLKKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTDSPK-IFLIDDVDILTEDTNQSYSEITSDAYLNYI  275 (322)
Q Consensus       197 ~~~~v~~~l~~~~~~~~~~~~~~~~~rv~i~Sf~~~~l~~~~~~~~~~~-v~l~~~~~~~~~~~~~~~~~~~~~~~l~~~  275 (322)
                      +++.++++++++++..          |++|+||+++++++++++.|... .++......      .        .....+
T Consensus       149 ~~~~v~~~l~~~~~~~----------~v~~~Sf~~~~l~~~~~~~p~~~~~~l~~~~~~------~--------~~~~~~  204 (263)
T cd08567         149 FVDAVLAVIRKAGLED----------RVVLQSFDWRTLQEVRRLAPDIPTVALTEETTL------G--------NLPRAA  204 (263)
T ss_pred             HHHHHHHHHHHcCCCC----------ceEEEeCCHHHHHHHHHHCCCccEEEEecCCcc------c--------CHHHHH
Confidence            8899999999998764          89999999999999999877544 444322110      0        011112


Q ss_pred             HhhccccCCCcceeeecCCCCCCCChHHHHHHHHcCCeEEEEeCCCC
Q 020686          276 KEYCVGIGPWKDTVVPVANNYSQTPTDLVARAHALDLQIHIGNTTTG  322 (322)
Q Consensus       276 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~ah~~Gl~V~vWTvn~~  322 (322)
                      +..    +.  ..+.+   .+..+++++++.+|++|+.|++||||+|
T Consensus       205 ~~~----~~--~~~~~---~~~~~~~~~i~~~~~~G~~v~vwtvn~~  242 (263)
T cd08567         205 KKL----GA--DIWSP---YFTLVTKELVDEAHALGLKVVPWTVNDP  242 (263)
T ss_pred             HHh----CC--cEEec---chhhcCHHHHHHHHHCCCEEEEecCCCH
Confidence            211    11  11222   3456799999999999999999999985

This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and similar proteins. The prototype of this CD is a putative GP-GDE from Silicibacter pomeroyi (SpGDE). It shows high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.

>cd08585 GDPD_like_3 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases

Probab=100.00  E-value=9.1e-42  Score=305.80  Aligned_cols=212  Identities=25%  Similarity=0.319  Sum_probs=158.1

Q ss_pred             CeEEeeCCCCCC---CchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCCccccCCCCcccccccccccccCCcc
Q 020686           44 PYNLAHRGSNGE---FPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVN  120 (322)
Q Consensus        44 p~iiaHRG~~~~---~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~~~~~g~~  120 (322)
                      +.+|||||+++.   +||||++||++|++.|+ +||+|||+||||++||+||.+++|+|++.                  
T Consensus         4 ~~~iaHRG~~~~~~~~pENTl~af~~A~~~G~-~iE~DV~lT~Dg~lVv~HD~~l~r~t~~~------------------   64 (237)
T cd08585           4 DRPIAHRGLHDRDAGIPENSLSAFRAAAEAGY-GIELDVQLTADGEVVVFHDDNLKRLTGVE------------------   64 (237)
T ss_pred             CCceECCCCCCCCCCCCccHHHHHHHHHHcCC-cEEEEeeECCCCCEEEeccchHhhhcCCC------------------
Confidence            457999999774   79999999999999999 89999999999999999999999999987                  


Q ss_pred             cccceeeccCHHHHccCcccccccCCCcccCCCccccCHHHHHHHHHhcCCcceEeeeeCCcccccccccccCcchHHHH
Q 020686          121 TTGFFVVDFTLEELKTLRAKQRYSFRDQQYNGKFPIITFEEYISIALDAQRVVGIYPEMKNPVFINQHVKWADGKKFEDK  200 (322)
Q Consensus       121 ~~g~~i~~~t~~el~~l~~~~~~~~r~~~~~~~~~iptL~e~l~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~~~~~  200 (322)
                        | .|.++|++||++++.+.          .+++||||+|+|+.+..   .+.++||+|.+..        ....+++.
T Consensus        65 --~-~v~~~t~~eL~~l~~~~----------~~~~iPtL~evl~~~~~---~~~l~iEiK~~~~--------~~~~l~~~  120 (237)
T cd08585          65 --G-RVEELTAAELRALRLLG----------TDEHIPTLDEVLELVAG---RVPLLIELKSCGG--------GDGGLERR  120 (237)
T ss_pred             --C-ccccCCHHHHhcCCCCC----------CCCCCCCHHHHHHHhcc---CceEEEEEccCCc--------cchHHHHH
Confidence              4 79999999999999863          23599999999998853   3689999997542        23468899


Q ss_pred             HHHHHHHcCCCCccccccccCCCEEEeccChhHHHHHhhcCCC-CeEEEEeccCccCCCCcccccccccHHHHHHHHhhc
Q 020686          201 FVDTLKKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTDS-PKIFLIDDVDILTEDTNQSYSEITSDAYLNYIKEYC  279 (322)
Q Consensus       201 v~~~l~~~~~~~~~~~~~~~~~rv~i~Sf~~~~l~~~~~~~~~-~~v~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  279 (322)
                      +++++++++            .+++|+||++++++++|++.|. +..++......   .... +  .........+.. .
T Consensus       121 v~~~l~~~~------------~~v~i~SF~~~~l~~l~~~~p~~~~~~l~~~~~~---~~~~-~--~~~~~~~~~~~~-~  181 (237)
T cd08585         121 VLAALKDYK------------GPAAIMSFDPRVVRWFRKLAPGIPRGQLSEGSND---EADP-A--FWNEALLSALFS-N  181 (237)
T ss_pred             HHHHHHhcC------------CCEEEEECCHHHHHHHHHHCCCCCEEEEecCCcc---cccc-c--chhHHHHHhhhh-h
Confidence            999999874            2799999999999999998775 44455432210   0000 0  000000111100 0


Q ss_pred             cccCCCcceeeecCCCCCCCChHHHHHHHHc-CCeEEEEeCCCC
Q 020686          280 VGIGPWKDTVVPVANNYSQTPTDLVARAHAL-DLQIHIGNTTTG  322 (322)
Q Consensus       280 ~~i~~~~~~~~~~~~~~~~~~~~~v~~ah~~-Gl~V~vWTvn~~  322 (322)
                      ...++.  .+.+   ++..+++++|+.+|++ |++|++||||+|
T Consensus       182 ~~~~~~--~~~~---~~~~~~~~~v~~~~~~~G~~v~vWTVnd~  220 (237)
T cd08585         182 LLTRPD--FIAY---HLDDLPNPFVTLARALLGMPVIVWTVRTE  220 (237)
T ss_pred             hccCCC--EEEe---ChhhCcCHHHHHHHHhcCCcEEEEeCCCH
Confidence            011221  1221   4456789999999999 999999999986

This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity with Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.

>cd08607 GDPD_GDE5 Glycerophosphodiester phosphodiesterase domain of putative mammalian glycerophosphodiester phosphodiesterase GDE5 and similar proteins

Probab=100.00  E-value=2.5e-41  Score=312.16  Aligned_cols=246  Identities=20%  Similarity=0.250  Sum_probs=166.8

Q ss_pred             eEEeeCCCC-------CCCchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCCccccCCCCcccccccccccccC
Q 020686           45 YNLAHRGSN-------GEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQ  117 (322)
Q Consensus        45 ~iiaHRG~~-------~~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~~~~~  117 (322)
                      +.|||||++       +.+||||++||+.|++.|+|+||+|||+||||++||+||.+++|++++...  .         +
T Consensus         1 ~~iaHRG~~~~~~~~~~~~PENTl~af~~A~~~Gad~iE~DV~lTkDg~~VV~HD~~l~r~~~~~~~--~---------~   69 (290)
T cd08607           1 LDVGHRGAGNSYTAASAVVRENTIASFLQAAEHGADMVEFDVQLTKDLVPVVYHDFTLRVSLKSKGD--S---------D   69 (290)
T ss_pred             CceecCCCCcCcccccCCCCccHHHHHHHHHHcCCCEEEEEEEEccCCeEEEEcCCeeEeeccCccc--c---------C
Confidence            359999994       899999999999999999999999999999999999999999999886410  0         0


Q ss_pred             CcccccceeeccCHHHHccCcccccccCCCcccC---------CCccccCHHHHHHHHHhcCCcceEeeeeCCccccccc
Q 020686          118 GVNTTGFFVVDFTLEELKTLRAKQRYSFRDQQYN---------GKFPIITFEEYISIALDAQRVVGIYPEMKNPVFINQH  188 (322)
Q Consensus       118 g~~~~g~~i~~~t~~el~~l~~~~~~~~r~~~~~---------~~~~iptL~e~l~~~~~~~~~~~l~iEiK~~~~~~~~  188 (322)
                      +....+..|.++|++||++++++.+..+..+.+.         ...++|||+|+|+.+..   .++++||||.+......
T Consensus        70 ~~~~~~~~v~~lt~~eL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~iPtL~evl~~~~~---~~~lnIEiK~~~~~~~~  146 (290)
T cd08607          70 RDDLLEVPVKDLTYEQLKLLKLFHISALKVKEYKSVEEDEDPPEHQPFPTLSDVLESVPE---DVGFNIEIKWPQQQKDG  146 (290)
T ss_pred             ccceEEEecccCCHHHHhhcCcccccccccccccccccccccccccCCCCHHHHHHhCCC---ccceEEEEecCcccccc
Confidence            0000123799999999999998754322222222         23589999999998853   48899999976421110


Q ss_pred             c------cccCcchHHHHHHHHHHHcCCCCccccccccCCCEEEeccChhHHHHHhhcCCC-CeEEEEeccCccCCCCcc
Q 020686          189 V------KWADGKKFEDKFVDTLKKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTDS-PKIFLIDDVDILTEDTNQ  261 (322)
Q Consensus       189 ~------~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~rv~i~Sf~~~~l~~~~~~~~~-~~v~l~~~~~~~~~~~~~  261 (322)
                      .      .+.+...+++.+++.+.+++..+          +++|+||++++|..++++.|. +..++......    ...
T Consensus       147 ~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~----------~v~isSF~~~~l~~~~~~~p~~~~~~l~~~~~~----~~~  212 (290)
T cd08607         147 SWESELFTYFDRNLFVDIILKIVLEHAGKR----------RIIFSSFDADICTMLRFKQNKYPVLFLTQGKTQ----RYP  212 (290)
T ss_pred             ccccccccccchhHHHHHHHHHHHHhCCCC----------CEEEEcCCHHHHHHHHHhCcCCCEEEEecCCCC----ccc
Confidence            0      01122458899999999987653          899999999999999998764 55555432210    000


Q ss_pred             cccccccHHHHHHHHhhccccCCCcceeeecCCCCCCCChHHHHHHHHcCCeEEEEeC--CCC
Q 020686          262 SYSEITSDAYLNYIKEYCVGIGPWKDTVVPVANNYSQTPTDLVARAHALDLQIHIGNT--TTG  322 (322)
Q Consensus       262 ~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~ah~~Gl~V~vWTv--n~~  322 (322)
                      .+...... .+.....++.........+   +..+...++++|+.+|++|+.|++|||  |+|
T Consensus       213 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~v~~~~~~Gl~v~~wTv~~n~~  271 (290)
T cd08607         213 EFMDLRTR-TFEIAVNFAQAEELLGVNL---HSEDLLKDPSQIELAKSLGLVVFCWGDDLNDP  271 (290)
T ss_pred             cccchHHH-hHHHHHHHHHHcCCceeEe---chhhhhcChHHHHHHHHcCCEEEEECCCCCCH
Confidence            11110000 0111112222222211111   124456799999999999999999999  875

This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative mammalian GDE5 and similar proteins. Mammalian GDE5 is widely expressed in mammalian tissues, with highest expression in the spinal chord. Although its biological function remains unclear, mammalian GDE5 shows higher sequence homology to fungal and plant glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46) than to other bacterial and mammalian GP-GDEs. It may also hydrolyze glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. In addition to C-terminal GDPD domain, all members in this subfamily have a starch binding domain (CBM20) in the N-terminus, which suggests these proteins may play a distinct role in glycerol metabolism.

>cd08572 GDPD_GDE5_like Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE5-like proteins

Probab=100.00  E-value=1.9e-41  Score=312.69  Aligned_cols=245  Identities=20%  Similarity=0.277  Sum_probs=170.4

Q ss_pred             eEEeeCCCC--------CCCchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCCccccCCCCccccccccccccc
Q 020686           45 YNLAHRGSN--------GEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMV  116 (322)
Q Consensus        45 ~iiaHRG~~--------~~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~~~~  116 (322)
                      +||||||++        +.+||||++||+.|++.|+|+||+|||+||||++||+||.++.|++++...  +         
T Consensus         1 ~viaHRG~~~~~~~~~~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDG~lVv~HD~~l~r~~~~~~~--~---------   69 (293)
T cd08572           1 LVIGHRGLGKNYASGSLAGIRENTIASFLAAAKHGADMVEFDVQLTKDGVPVIYHDFTISVSEKSKTG--S---------   69 (293)
T ss_pred             CceEecCCCCCcCcccccCcCcccHHHHHHHHHcCCCEEEEEEEEccCCeEEEEcCCcceeecccccc--c---------
Confidence            479999997        799999999999999999999999999999999999999999999987631  0         


Q ss_pred             CCcccccceeeccCHHHHccCcccccccCCCcc--------------cCCCccccCHHHHHHHHHhcCCcceEeeeeCCc
Q 020686          117 QGVNTTGFFVVDFTLEELKTLRAKQRYSFRDQQ--------------YNGKFPIITFEEYISIALDAQRVVGIYPEMKNP  182 (322)
Q Consensus       117 ~g~~~~g~~i~~~t~~el~~l~~~~~~~~r~~~--------------~~~~~~iptL~e~l~~~~~~~~~~~l~iEiK~~  182 (322)
                      ++....+..|.++|++||++++++.+++..++.              ...+.++|||+|+|+.+++   .++++||||.+
T Consensus        70 ~~~~g~~~~v~~lT~~eL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iptL~evL~~~~~---~~~l~IEiK~~  146 (293)
T cd08572          70 DEGELIEVPIHDLTLEQLKELGLQHISALKRKALTRKAKGPKPNPWGMDEHDPFPTLQEVLEQVPK---DLGFNIEIKYP  146 (293)
T ss_pred             ccCcceeeehhhCcHHHHHhccccccccccccccccccccCCccccchhhccCCCCHHHHHHhCCC---ccceEEEEecC
Confidence            000011237999999999999998764322221              1123589999999998853   47899999986


Q ss_pred             cccccc----ccccCcchHHHHHHHHHHHcCCCCccccccccCCCEEEeccChhHHHHHhhcCCC-CeEEEEeccCccCC
Q 020686          183 VFINQH----VKWADGKKFEDKFVDTLKKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTDS-PKIFLIDDVDILTE  257 (322)
Q Consensus       183 ~~~~~~----~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~rv~i~Sf~~~~l~~~~~~~~~-~~v~l~~~~~~~~~  257 (322)
                      ......    ..++....+++.++++++++++.+          +++++||++++|+.+++..|. +.++++..... . 
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~vl~~i~~~~~~~----------~vv~~SF~~~~l~~l~~~~p~~~~~~l~~~~~~-~-  214 (293)
T cd08572         147 QLLEDGEGELTPYFERNAFVDTILAVVFEHAGGR----------RIIFSSFDPDICIMLRLKQNKYPVLFLTNGGTN-E-  214 (293)
T ss_pred             CccccccccccchHHHHHHHHHHHHHHHHhCCCC----------cEEEECCCHHHHHHHHhhCccCCEEEEecCCCC-c-
Confidence            532210    011122468899999999998764          899999999999999998764 55555533210 0 


Q ss_pred             CCcccccccccHHHHHHHHhhccccCCCcceeeecCCCCCCCChHHHHHHHHcCCeEEEEeC--CCC
Q 020686          258 DTNQSYSEITSDAYLNYIKEYCVGIGPWKDTVVPVANNYSQTPTDLVARAHALDLQIHIGNT--TTG  322 (322)
Q Consensus       258 ~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~ah~~Gl~V~vWTv--n~~  322 (322)
                         ..+.... ...+..+..++...+..  .+.+ ...+...++++|+.+|++|+.|++|||  |+|
T Consensus       215 ---~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~v~~~~~~Gl~v~~wTv~~n~~  274 (293)
T cd08572         215 ---VEHMDPR-RRSLQAAVNFALAEGLL--GVVL-HAEDLLKNPSLISLVKALGLVLFTYGDDNNDP  274 (293)
T ss_pred             ---ccccchh-hhhHHHHHHHHHHCCCe--EEEe-chHHhhcCcHHHHHHHHcCcEEEEECCCCCCH
Confidence               0010000 01122222222212221  1111 112344689999999999999999999  875

This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian glycerophosphodiester phosphodiesterase GDE5-like proteins. GDE5 is widely expressed in mammalian tissues, with highest expression in spinal chord. Although its biological function remains unclear, mammalian GDE5 shows higher sequence homology to fungal and plant glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46) than to other bacterial and mammalian GP-GDEs. It may also hydrolyze glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.

>cd08570 GDPD_YPL206cp_fungi Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL206cp and similar proteins

Probab=100.00  E-value=5.1e-41  Score=300.87  Aligned_cols=210  Identities=22%  Similarity=0.309  Sum_probs=158.1

Q ss_pred             EEeeCCCCCCCchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCCccccCCCCcccccccccccccCCcccccce
Q 020686           46 NLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVNTTGFF  125 (322)
Q Consensus        46 iiaHRG~~~~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~~~~~g~~~~g~~  125 (322)
                      ||||||+++.+||||++||+.|++.|+|+||+|||+||||++||+||.++.|+|++.                    |..
T Consensus         1 iiAHRG~~~~~pENT~~af~~a~~~g~d~vE~Dv~lTkDg~~vv~HD~~l~R~t~~~--------------------~~~   60 (234)
T cd08570           1 VIGHRGYKAKYPENTLLAFEKAVEAGADAIETDVHLTKDGVVVISHDPNLKRCFGKD--------------------GLI   60 (234)
T ss_pred             CEeCCCCCCCCCccHHHHHHHHHHhCCCEEEEEeeEccCCcEEEeCCCccceeeCCC--------------------CCE
Confidence            589999999999999999999999999999999999999999999999999999976                    227


Q ss_pred             eeccCHHHHccCcccccccCCCcccCCCccccCHHHHHHHHHhc-CCcceEeeeeCCcccccccccccCcchHHHHHHHH
Q 020686          126 VVDFTLEELKTLRAKQRYSFRDQQYNGKFPIITFEEYISIALDA-QRVVGIYPEMKNPVFINQHVKWADGKKFEDKFVDT  204 (322)
Q Consensus       126 i~~~t~~el~~l~~~~~~~~r~~~~~~~~~iptL~e~l~~~~~~-~~~~~l~iEiK~~~~~~~~~~~~~~~~~~~~v~~~  204 (322)
                      |.++|++||++++++.         .+..++|||+|+|+.++++ ++.+.++||+|...         ....+++.+.++
T Consensus        61 v~~~t~~eL~~l~~~~---------~~~~~iptL~evl~~~~~~~~~~~~l~iEiK~~~---------~~~~~~~~v~~~  122 (234)
T cd08570          61 IDDSTWDELSHLRTIE---------EPHQPMPTLKDVLEWLVEHELPDVKLMLDIKRDN---------DPEILFKLIAEM  122 (234)
T ss_pred             eccCCHHHHhhccccc---------CCCccCCcHHHHHHHHHhcCCCCeEEEEEECCCC---------CHHHHHHHHHHH
Confidence            9999999999998763         1235899999999999764 13588999999743         123567788888


Q ss_pred             HHHcCCCCccccccccCCCEEEeccChhHHHHHhhcCCC-CeEEEEeccCccCCCCcccccccccHHHHHHHHhh---cc
Q 020686          205 LKKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTDS-PKIFLIDDVDILTEDTNQSYSEITSDAYLNYIKEY---CV  280 (322)
Q Consensus       205 l~~~~~~~~~~~~~~~~~rv~i~Sf~~~~l~~~~~~~~~-~~v~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~  280 (322)
                      +++++...      |..+|++|+||++..++++++..|. +.+++.....                 .......+   +.
T Consensus       123 i~~~~~~~------~~~~~v~i~Sf~~~~l~~l~~~~p~~~~~~l~~~~~-----------------~~~~~~~~~~~~~  179 (234)
T cd08570         123 LAVKPDLD------FWRERIILGLWHLDFLKYGKEVLPGFPVFHIGFSLD-----------------YARHFLNYSEKLV  179 (234)
T ss_pred             HHhcCCcc------cccCCEEEEeCCHHHHHHHHHhCCCCCeEEEEcCHH-----------------HHHHHhccccccc
Confidence            88876421      1225999999999999999998775 4444321110                 00011111   11


Q ss_pred             ccCCCcceeeecCCCCCCCChHHHHHHHHcCCeEEEEeCCCC
Q 020686          281 GIGPWKDTVVPVANNYSQTPTDLVARAHALDLQIHIGNTTTG  322 (322)
Q Consensus       281 ~i~~~~~~~~~~~~~~~~~~~~~v~~ah~~Gl~V~vWTvn~~  322 (322)
                      ++++....      .+..+++++++.+|++|++|++||||++
T Consensus       180 ~~~~~~~~------~~~~~~~~~v~~~~~~gl~v~~wTvn~~  215 (234)
T cd08570         180 GISMHFVS------LWGPFGQAFLPELKKNGKKVFVWTVNTE  215 (234)
T ss_pred             eEEeeeeh------hhcccCHHHHHHHHHCCCEEEEEecCCH
Confidence            22211000      0111589999999999999999999985

This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Saccharomyces cerevisiae YPL206cp and uncharacterized hypothetical homologs existing in fungi. The product of S. cerevisiae ORF YPL206c (PGC1), YPL206cp (Pgc1p), displays homology to bacterial and mammalian glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. S. cerevisiae YPL206cp is an integral membrane protein with a single GDPD domain following by a short hydrophobic C-terminal tail that may function as a membrane anchor. This protein plays an essential role in the regulation of the cardiolipin (CL) biosynthetic pathway in yeast by removing the excess phosphatidylglycerol (PG) content of membranes via a phospholip

>cd08564 GDPD_GsGDE_like Glycerophosphodiester phosphodiesterase domain of putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase and similar proteins

Probab=100.00  E-value=8.4e-41  Score=304.77  Aligned_cols=211  Identities=23%  Similarity=0.327  Sum_probs=162.6

Q ss_pred             CCCCeEEeeCCCCCC--CchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCCcc--------ccCCCCccccccc
Q 020686           41 TSRPYNLAHRGSNGE--FPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDD--------TTNIADHKEFADR  110 (322)
Q Consensus        41 ~~~p~iiaHRG~~~~--~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l~r--------~t~~~~~~~~~~~  110 (322)
                      +.+|.||||||+++.  +||||++||++|++.|+|+||+|||+||||++||+||.++++        ++++.        
T Consensus         1 ~~~~~iiaHRG~~~~~~~pENTl~Af~~A~~~Gad~iE~DV~lTkDg~lVv~HD~~~~~~~~~~~~~~~~~~--------   72 (265)
T cd08564           1 MVRPIIVGHRGAGCSTLYPENTLPSFRRALEIGVDGVELDVFLTKDNEIVVFHGTEDDTNPDTSIQLDDSGF--------   72 (265)
T ss_pred             CCCceEEEeCCCCCCCCCCchhHHHHHHHHHcCCCEEEEeeEECCCCCEEEEcCCccccCccccccccCCCc--------
Confidence            467999999999987  999999999999999999999999999999999999987665        44443        


Q ss_pred             ccccccCCcccccceeeccCHHHHccCcccccccCCC---cccCCCccccCHHHHHHHHHhcCCcceEeeeeCCcccccc
Q 020686          111 KRTCMVQGVNTTGFFVVDFTLEELKTLRAKQRYSFRD---QQYNGKFPIITFEEYISIALDAQRVVGIYPEMKNPVFINQ  187 (322)
Q Consensus       111 ~~~~~~~g~~~~g~~i~~~t~~el~~l~~~~~~~~r~---~~~~~~~~iptL~e~l~~~~~~~~~~~l~iEiK~~~~~~~  187 (322)
                                  | .|.++|++||++++++.++..+.   ..+. +.++|||+|+|+.+++   .+.++||+|.+.    
T Consensus        73 ------------~-~v~~~t~~el~~l~~~~~~~~~~~~~~~~~-~~~iptL~evl~~~~~---~~~l~iEiK~~~----  131 (265)
T cd08564          73 ------------K-NINDLSLDEITRLHFKQLFDEKPCGADEIK-GEKIPTLEDVLVTFKD---KLKYNIELKGRE----  131 (265)
T ss_pred             ------------c-chhhCcHHHHhhcccCcccccCcccccccC-CccCCCHHHHHHHhcc---CcEEEEEeCCCc----
Confidence                        3 79999999999999987763221   1123 3699999999999864   489999999753    


Q ss_pred             cccccCcchHHHHHHHHHHHcCCCCccccccccCCCEEEeccCh-hHHHHHhhcCCC----CeEEEEeccCccCCCCccc
Q 020686          188 HVKWADGKKFEDKFVDTLKKYGYKGAYMSKEWLKQPIFIQSFAP-TSLVYISNKTDS----PKIFLIDDVDILTEDTNQS  262 (322)
Q Consensus       188 ~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~rv~i~Sf~~-~~l~~~~~~~~~----~~v~l~~~~~~~~~~~~~~  262 (322)
                             ..+++.++++++++++.+          +++|+||++ +++++++++.|.    +.+++......     . .
T Consensus       132 -------~~~~~~v~~~l~~~~~~~----------~v~i~SF~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~-----~-~  188 (265)
T cd08564         132 -------VGLGERVLNLVEKYGMIL----------QVHFSSFLHYDRLDLLKALRPNKLNVPIALLFNEVKS-----P-S  188 (265)
T ss_pred             -------hhHHHHHHHHHHHcCCCC----------CEEEEecCchhHHHHHHHhCcCCCCceEEEEecCCCC-----c-c
Confidence                   357899999999999764          899999999 999999998763    55555543210     0 0


Q ss_pred             ccccccHHHHHHHHhh-ccccCCCcceeeecCCCCCCCChHHHHHHHHcCCeEEEEe
Q 020686          263 YSEITSDAYLNYIKEY-CVGIGPWKDTVVPVANNYSQTPTDLVARAHALDLQIHIGN  318 (322)
Q Consensus       263 ~~~~~~~~~l~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~v~~ah~~Gl~V~vWT  318 (322)
                      +     .+.++.++.. +.++.+          ++..+++++|+.+|++|+.|++||
T Consensus       189 ~-----~~~~~~~~~~~~~~v~~----------~~~~~~~~~v~~~~~~Gl~v~~wT  230 (265)
T cd08564         189 P-----LDFLEQAKYYNATWVNF----------SYDFWTEEFVKKAHENGLKVMTYF  230 (265)
T ss_pred             c-----ccHHHHHHhcCCceeee----------chhhhhHHHHHHHHHcCCEEEEec
Confidence            0     0112222221 222221          345668999999999999999999

This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase (GsGDE, EC 3.1.4.46) and its uncharacterized eukaryotic homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.

>cd08561 GDPD_cytoplasmic_ScUgpQ2_like Glycerophosphodiester phosphodiesterase domain of Streptomyces coelicolor cytoplasmic phosphodiesterases UgpQ2 and similar proteins

Probab=100.00  E-value=2.3e-40  Score=299.28  Aligned_cols=212  Identities=29%  Similarity=0.366  Sum_probs=161.6

Q ss_pred             EEeeCCCCCCCchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCCccccCCCCcccccccccccccCCcccccce
Q 020686           46 NLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVNTTGFF  125 (322)
Q Consensus        46 iiaHRG~~~~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~~~~~g~~~~g~~  125 (322)
                      ||||||+++.+||||++||++|++.|+|+||+|||+||||++||+||.++.|+|++.                    | .
T Consensus         1 iiaHRG~~~~~pENT~~af~~A~~~g~d~vE~Dv~~TkDg~~Vv~HD~~l~r~t~~~--------------------~-~   59 (249)
T cd08561           1 VIAHRGGAGLAPENTLLAFEDAVELGADVLETDVHATKDGVLVVIHDETLDRTTDGT--------------------G-P   59 (249)
T ss_pred             CcccCCCCCCCCccHHHHHHHHHHhCCCEEEEEeeECCCCCEEEECCCccccccCCC--------------------C-c
Confidence            589999999999999999999999999999999999999999999999999999987                    3 7


Q ss_pred             eeccCHHHHccCcccccccCCCc-----ccCCCccccCHHHHHHHHHhcCCcceEeeeeCCcccccccccccCcchHHHH
Q 020686          126 VVDFTLEELKTLRAKQRYSFRDQ-----QYNGKFPIITFEEYISIALDAQRVVGIYPEMKNPVFINQHVKWADGKKFEDK  200 (322)
Q Consensus       126 i~~~t~~el~~l~~~~~~~~r~~-----~~~~~~~iptL~e~l~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~~~~~  200 (322)
                      |.++|++||++++.+.++..++.     .+. .+++|||+|+|+.+.+    +.++||+|.+.           ..+++.
T Consensus        60 i~~~t~~el~~l~~~~~~~~~~~~~~~~~~~-~~~iptL~evl~~~~~----~~~~ieiK~~~-----------~~~~~~  123 (249)
T cd08561          60 VADLTLAELRRLDAGYHFTDDGGRTYPYRGQ-GIRIPTLEELFEAFPD----VRLNIEIKDDG-----------PAAAAA  123 (249)
T ss_pred             hhhCCHHHHhhcCcCccccCccccccccCCC-CccCCCHHHHHHhCcC----CcEEEEECCCc-----------hhHHHH
Confidence            99999999999998766422211     122 3599999999998742    78999999742           358899


Q ss_pred             HHHHHHHcCCCCccccccccCCCEEEeccChhHHHHHhhcCCCCeEEEEeccCccCCCCcccccccccHHHHHHHHhhc-
Q 020686          201 FVDTLKKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTDSPKIFLIDDVDILTEDTNQSYSEITSDAYLNYIKEYC-  279 (322)
Q Consensus       201 v~~~l~~~~~~~~~~~~~~~~~rv~i~Sf~~~~l~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-  279 (322)
                      ++++++++++..          +++++||+..+++++++..|.....+....                  ......... 
T Consensus       124 ~~~~l~~~~~~~----------~~~~~Sf~~~~l~~~~~~~p~~~~~~~~~~------------------~~~~~~~~~~  175 (249)
T cd08561         124 LADLIERYGAQD----------RVLVASFSDRVLRRFRRLCPRVATSAGEGE------------------VAAFVLASRL  175 (249)
T ss_pred             HHHHHHHcCCCC----------cEEEEECCHHHHHHHHHHCCCcceeccHHH------------------HHHHHHHhhc
Confidence            999999998654          899999999999999999875444332111                  011000000 


Q ss_pred             ---cccCCCcceee-ec-CCCCCCCChHHHHHHHHcCCeEEEEeCCCC
Q 020686          280 ---VGIGPWKDTVV-PV-ANNYSQTPTDLVARAHALDLQIHIGNTTTG  322 (322)
Q Consensus       280 ---~~i~~~~~~~~-~~-~~~~~~~~~~~v~~ah~~Gl~V~vWTvn~~  322 (322)
                         .........+. +. ...+..+++++++.+|++|+.|++||||++
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~G~~v~vWTVN~~  223 (249)
T cd08561         176 GLGSLYSPPYDALQIPVRYGGVPLVTPRFVRAAHAAGLEVHVWTVNDP  223 (249)
T ss_pred             ccccccCCCCcEEEcCcccCCeecCCHHHHHHHHHCCCEEEEEecCCH
Confidence               00011111111 11 113446789999999999999999999985

This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized cytoplasmic phosphodiesterases which predominantly exist in bacteria. The prototype of this family is a putative cytoplasmic phosphodiesterase encoded by gene ulpQ2 (SCO1419) in the Streptomyces coelicolor genome. It is distantly related to the Escherichia coli cytoplasmic phosphodiesterases UgpQ that catalyzes the hydrolysis of glycerophosphodiesters at the inner side of the cytoplasmic membrane to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.

>cd08606 GDPD_YPL110cp_fungi Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL110cp and similar proteins

Probab=100.00  E-value=3.1e-40  Score=304.24  Aligned_cols=233  Identities=22%  Similarity=0.296  Sum_probs=161.6

Q ss_pred             CeEEeeCCCCCCCc--------hhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCCccccCCCCcccccccccccc
Q 020686           44 PYNLAHRGSNGEFP--------EETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCM  115 (322)
Q Consensus        44 p~iiaHRG~~~~~p--------ENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~~~  115 (322)
                      +.||||||+++.+|        |||++||++|++.|+|+||+|||+||||+|||+||.+++|+ ++.             
T Consensus         2 ~~iiaHRG~~~~~p~~~~~~~pENTl~af~~A~~~g~d~vE~DV~lTkDg~~VV~HD~~l~rt-~~~-------------   67 (286)
T cd08606           2 VQVIGHRGLGKNTAERKSLQLGENTVESFILAASLGASYVEVDVQLTKDLVPVIYHDFLVSET-GTD-------------   67 (286)
T ss_pred             ceEEEeCCCCCCcccccccCcCcchHHHHHHHHHcCCCEEEEEEEEccCCEEEEeCCCeeccC-CCC-------------
Confidence            67999999999999        99999999999999999999999999999999999999995 544             


Q ss_pred             cCCcccccceeeccCHHHHccCcccccc-cCCCcccC----CC---ccccCHHHHHHHHHhcCCcceEeeeeCCcccccc
Q 020686          116 VQGVNTTGFFVVDFTLEELKTLRAKQRY-SFRDQQYN----GK---FPIITFEEYISIALDAQRVVGIYPEMKNPVFINQ  187 (322)
Q Consensus       116 ~~g~~~~g~~i~~~t~~el~~l~~~~~~-~~r~~~~~----~~---~~iptL~e~l~~~~~~~~~~~l~iEiK~~~~~~~  187 (322)
                             | .|.++|++||++++..... .+....|.    +.   .++|||+|+|+.+.   ..++++||||.+.....
T Consensus        68 -------~-~v~~lt~~eL~~ld~~~~~~~~~~~~~~~~~~g~~~~~~iptL~evl~~~~---~~~~l~IEiK~~~~~~~  136 (286)
T cd08606          68 -------V-PIHDLTLEQFLHLSRMKYTVDFKKKGFKGNSRGHSIQAPFTTLEELLKKLP---KSVGFNIELKYPMLHEA  136 (286)
T ss_pred             -------C-ccccCCHHHHHhhhcccccccccccCCCCcccccccccCCCcHHHHHHhCC---CccceEEEEecCCcchh
Confidence                   3 6999999999999743211 11122222    21   36899999999884   34789999998643211


Q ss_pred             ccc-----ccCcchHHHHHHHHHHHcCCCCccccccccCCCEEEeccChhHHHHHhhcCCCC-eEEEEeccCccCCCCcc
Q 020686          188 HVK-----WADGKKFEDKFVDTLKKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTDSP-KIFLIDDVDILTEDTNQ  261 (322)
Q Consensus       188 ~~~-----~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~rv~i~Sf~~~~l~~~~~~~~~~-~v~l~~~~~~~~~~~~~  261 (322)
                      ...     ..+.+.+++.++++++++++..          +++|+||++++|++++++.|.. ..++......  ..   
T Consensus       137 ~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~----------~vi~sSF~~~~l~~~~~~~p~~~~~~l~~~~~~--~~---  201 (286)
T cd08606         137 EEEEVAPVAIELNAFVDTVLEKVFDYGAGR----------NIIFSSFTPDICILLSLKQPGYPVLFLTEAGKA--PD---  201 (286)
T ss_pred             hhcccccchhHHHHHHHHHHHHHHhcCCCC----------ceEEEcCCHHHHHHHHhhCcCCCEEEEeCCCCC--cc---
Confidence            000     0011357889999999998753          8999999999999999987654 4444432110  00   


Q ss_pred             cccccccHHHHHHHHhhccccCCCcceeeecCCCCCCCChHHHHHHHHcCCeEEEEeC--CCC
Q 020686          262 SYSEITSDAYLNYIKEYCVGIGPWKDTVVPVANNYSQTPTDLVARAHALDLQIHIGNT--TTG  322 (322)
Q Consensus       262 ~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~ah~~Gl~V~vWTv--n~~  322 (322)
                        ..... ..+.....++..++..  .+.+ ...+..+++++|+.+|++|+.|++|||  |+|
T Consensus       202 --~~~~~-~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~v~~~~~~Gl~v~~WTv~~n~~  258 (286)
T cd08606         202 --MDVRA-ASLQEAIRFAKQWNLL--GLVS-AAEPLVMCPRLIQVVKRSGLVCVSYGVLNNDP  258 (286)
T ss_pred             --CCchh-hcHHHHHHHHHHCCCe--EEEe-chHHhhhChHHHHHHHHCCcEEEEECCccCCH
Confidence              00000 0011111222222221  1111 113345689999999999999999999  875

This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Saccharomyces cerevisiae YPL110cp and other uncharacterized fungal homologs. The product of S. cerevisiae ORF YPL110c (GDE1), YPL110cp (Gde1p), displays homology to bacterial and mammalian glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. S. cerevisiae YPL110cp has been characterized as a cytoplasmic glycerophosphocholine (GPC)-specific phosphodiesterase that selectively hydrolyzes GPC, not glycerophosphoinositol (GPI), to generate choline and glycerolphosphate. YPL110cp has multi-domain architecture, including not only C-terminal GDPD, but also an SPX N-terminal domain along with several ankyrin repeats, which imp

>cd08605 GDPD_GDE5_like_1_plant Glycerophosphodiester phosphodiesterase domain of uncharacterized plant glycerophosphodiester phosphodiesterase-like proteins similar to mammalian GDE5

Probab=100.00  E-value=3.4e-40  Score=303.38  Aligned_cols=234  Identities=21%  Similarity=0.190  Sum_probs=160.1

Q ss_pred             eEEeeCCCCC-C----------CchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCCccccCCCCcccccccccc
Q 020686           45 YNLAHRGSNG-E----------FPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRT  113 (322)
Q Consensus        45 ~iiaHRG~~~-~----------~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~  113 (322)
                      .+|||||++. .          +||||++||++|++.|+|+||+|||+||||+|||+||.+++|++++..          
T Consensus         1 ~~ighrg~~~~~~~~~~~~~~~~~ENTl~Af~~A~~~Gad~vE~DV~lTkDg~~VV~HD~~l~r~~~g~~----------   70 (282)
T cd08605           1 AVIGHRGLGMNRASHQPSVGPGIRENTIASFIAASKFGADFVEFDVQVTRDGVPVIWHDDFIVVERGGEV----------   70 (282)
T ss_pred             CeEeccCCCcCcccccccccCCCCCcHHHHHHHHHHcCCCEEEEEEEECcCCeEEEECCCceecccCCCc----------
Confidence            3799999865 3          459999999999999999999999999999999999999999988520          


Q ss_pred             cccCCcccccceeeccCHHHHccCcccccccCCC----------cc---c--CCCccccCHHHHHHHHHhcCCcceEeee
Q 020686          114 CMVQGVNTTGFFVVDFTLEELKTLRAKQRYSFRD----------QQ---Y--NGKFPIITFEEYISIALDAQRVVGIYPE  178 (322)
Q Consensus       114 ~~~~g~~~~g~~i~~~t~~el~~l~~~~~~~~r~----------~~---~--~~~~~iptL~e~l~~~~~~~~~~~l~iE  178 (322)
                             ..| .|.++|++||++|+++.++.+..          +.   +  ..+.++|||+|+|+.+..   .+.++||
T Consensus        71 -------~~~-~V~dlT~~EL~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iPtL~evl~~~~~---~~~l~IE  139 (282)
T cd08605          71 -------ESS-RIRDLTLAELKALGPQAESTKTSTVALYRKAKDPEPEPWIMDVEDSIPTLEEVFSEVPP---SLGFNIE  139 (282)
T ss_pred             -------Ccc-chhhCcHHHHHhccccccccccCcchhhccccccccccccccccCCCCCHHHHHHhCCC---CccEEEE
Confidence                   013 69999999999999876542100          00   0  123689999999998842   4789999


Q ss_pred             eCCcccccccccccCcchHHHHHHHHHHHcCCCCccccccccCCCEEEeccChhHHHHHhhcCCCC-eEEEEeccCccCC
Q 020686          179 MKNPVFINQHVKWADGKKFEDKFVDTLKKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTDSP-KIFLIDDVDILTE  257 (322)
Q Consensus       179 iK~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~rv~i~Sf~~~~l~~~~~~~~~~-~v~l~~~~~~~~~  257 (322)
                      ||.+......  ...-..+++.++++++++++..          +++|+|||+++|+++|++.|.. ..+|......   
T Consensus       140 iK~~~~~~~~--~~~~~~~~~~v~~~i~~~~~~~----------~viisSF~~~~l~~l~~~~p~~~~~~L~~~~~~---  204 (282)
T cd08605         140 LKFGDDNKTE--AEELVRELRAILAVCKQHAPGR----------RIMFSSFDPDAAVLLRALQSLYPVMFLTDCGPY---  204 (282)
T ss_pred             EecCccccch--HHHHHHHHHHHHHHHHhcCCCC----------eEEEEeCCHHHHHHHHhcCccCCEEEEecCCCc---
Confidence            9975421100  0000124678899999988754          8999999999999999987754 4454432210   


Q ss_pred             CCcccccccccHHHHHHHHhhccccCCCcceeeecCCCCCCCChHHHHHHHHcCCeEEEEeC--CCC
Q 020686          258 DTNQSYSEITSDAYLNYIKEYCVGIGPWKDTVVPVANNYSQTPTDLVARAHALDLQIHIGNT--TTG  322 (322)
Q Consensus       258 ~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~ah~~Gl~V~vWTv--n~~  322 (322)
                          .+.... ...+.....++..++..  .+.+. ......++++|+.+|++|+.|++|||  |+|
T Consensus       205 ----~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~-~~~l~~~~~~v~~~~~~Gl~v~vWTv~~n~~  263 (282)
T cd08605         205 ----THNDPR-RNSIEAAIQVALEGGLQ--GIVSE-VKVLLRNPTAVSLVKASGLELGTYGKLNNDA  263 (282)
T ss_pred             ----cccCch-hhhHHHHHHHHHHcCCc--eEEec-HHHhhcCcHHHHHHHHcCcEEEEeCCCCCCH
Confidence                000000 00111111222222221  22221 01123589999999999999999999  975

This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized plant glycerophosphodiester phosphodiesterase (GP-PDE)-like proteins. Members in this family show very high sequence homology to mammalian glycerophosphodiester phosphodiesterase GDE5 and are distantly related to plant GP-PDEs.

>cd08566 GDPD_AtGDE_like Glycerophosphodiester phosphodiesterase domain of Agrobacterium tumefaciens and similar proteins

Probab=100.00  E-value=7.2e-40  Score=294.30  Aligned_cols=204  Identities=25%  Similarity=0.275  Sum_probs=158.4

Q ss_pred             eEEeeCCCCCC-CchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCCccccCCCCcccccccccccccCCccccc
Q 020686           45 YNLAHRGSNGE-FPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVNTTG  123 (322)
Q Consensus        45 ~iiaHRG~~~~-~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~~~~~g~~~~g  123 (322)
                      +||||||+++. +||||++||++|++.|+|+||+|||+||||++||+||.+++|+|++.                    |
T Consensus         1 ~iiaHRG~~~~~~pENTl~af~~A~~~g~d~iE~DV~~T~Dg~~vv~HD~~l~r~t~~~--------------------~   60 (240)
T cd08566           1 LVVAHRGGWGAGAPENSLAAIEAAIDLGADIVEIDVRRTKDGVLVLMHDDTLDRTTNGK--------------------G   60 (240)
T ss_pred             CeEecCCCCCCCCCccHHHHHHHHHHcCCCEEEEEeeEcCCCCEEEECCCCCccccCCC--------------------C
Confidence            47999999998 99999999999999999999999999999999999999999999987                    4


Q ss_pred             ceeeccCHHHHccCcccccccCCCcccCCCccccCHHHHHHHHHhcCCcceEeeeeCCcccccccccccCcchHHHHHHH
Q 020686          124 FFVVDFTLEELKTLRAKQRYSFRDQQYNGKFPIITFEEYISIALDAQRVVGIYPEMKNPVFINQHVKWADGKKFEDKFVD  203 (322)
Q Consensus       124 ~~i~~~t~~el~~l~~~~~~~~r~~~~~~~~~iptL~e~l~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~~~~~v~~  203 (322)
                       .+.++|++||++++.+.++    ..+.+ +++|||+|+|+.+++.   +.++||+|.+              ..+.+++
T Consensus        61 -~v~~~t~~el~~l~~~~~~----~~~~~-~~iptL~evl~~~~~~---~~l~iEiK~~--------------~~~~~~~  117 (240)
T cd08566          61 -KVSDLTLAEIRKLRLKDGD----GEVTD-EKVPTLEEALAWAKGK---ILLNLDLKDA--------------DLDEVIA  117 (240)
T ss_pred             -chhhCcHHHHHhCCcCCCc----CCCCC-CCCCCHHHHHHhhhcC---cEEEEEECch--------------HHHHHHH
Confidence             7999999999999998764    23344 5999999999998752   7899999963              3578899


Q ss_pred             HHHHcCCCCccccccccCCCEEEeccChhHHHHHhhcCCCCeEEEEeccCccCCCCcccccccccHHHHHHHHhhccccC
Q 020686          204 TLKKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTDSPKIFLIDDVDILTEDTNQSYSEITSDAYLNYIKEYCVGIG  283 (322)
Q Consensus       204 ~l~~~~~~~~~~~~~~~~~rv~i~Sf~~~~l~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~  283 (322)
                      +++++++.+          +++|+||+.+.++.++++.|.....++.....              +.... .......+.
T Consensus       118 ~~~~~~~~~----------~v~~~sf~~~~l~~~~~~~p~~~~~~l~~~~~--------------~~~~~-~~~~~~~~~  172 (240)
T cd08566         118 LVKKHGALD----------QVIFKSYSEEQAKELRALAPEVMLMPIVRDAE--------------DLDEE-EARAIDALN  172 (240)
T ss_pred             HHHHcCCcc----------cEEEEECCHHHHHHHHHhCCCCEEEEEEccCc--------------chhHH-HHhcccccc
Confidence            999998754          89999999999999999977655544432210              00000 001111111


Q ss_pred             CCcceeeecCCCCCC-CChHHHHHHHHc-CCeEEEEeCCC
Q 020686          284 PWKDTVVPVANNYSQ-TPTDLVARAHAL-DLQIHIGNTTT  321 (322)
Q Consensus       284 ~~~~~~~~~~~~~~~-~~~~~v~~ah~~-Gl~V~vWTvn~  321 (322)
                      +  ..+.+   .+.. ..+..+..+|+. |++|++||||+
T Consensus       173 ~--~~~~~---~~~~~~~~~~~~~~~~~~Gl~v~~wTvn~  207 (240)
T cd08566         173 L--LAFEI---TFDDLDLPPLFDELLRALGIRVWVNTLGD  207 (240)
T ss_pred             e--EEEEE---eccccccHHHHHHHHHhCCCEEEEECCCc
Confidence            1  11222   2332 467888888887 99999999995

This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Agrobacterium tumefaciens glycerophosphodiester phosphodiesterase (AtGDE, EC 3.1.4.46) and its uncharacterized eukaryotic homolgoues. Members in this family shows high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. AtGDE exists as a hexamer that is a trimer of dimers, which is unique among current known GDPD family members. However, it remains unclear if the hexamer plays a physiological role in AtGDE enzymatic function.

>cd08583 PI-PLCc_GDPD_SF_unchar1 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases

Probab=100.00  E-value=2.3e-38  Score=284.27  Aligned_cols=211  Identities=18%  Similarity=0.174  Sum_probs=153.5

Q ss_pred             EEeeCCC--CCCCchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCCccccCCCCcccccccccccccCCccccc
Q 020686           46 NLAHRGS--NGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVNTTG  123 (322)
Q Consensus        46 iiaHRG~--~~~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~~~~~g~~~~g  123 (322)
                      .|||||+  ++.+||||++||++|++.|+|+||+|||+||||++||+||.++.|+.+...                ...+
T Consensus         1 ~~aHRG~G~~~~~pENTl~Af~~A~~~G~d~iE~DV~lTkDg~lVv~HD~~~~r~~~~g~----------------~~~~   64 (237)
T cd08583           1 LIAHAMGGIDGKTYTNSLDAFEHNYKKGYRVFEVDLSLTSDGVLVARHSWDESLLKQLGL----------------PTSK   64 (237)
T ss_pred             CeeecCCCCCCCCCccHHHHHHHHHHhCCCEEEEEeeEccCCCEEEEECCcCchhhhcCC----------------cccc
Confidence            3899997  679999999999999999999999999999999999999999987532210                0002


Q ss_pred             ceeeccCHHHHccCcccccccCCCcccCCCccccCHHHHHHHHHhcCCcceEeeeeCCcccccccccccCcchHHHHHHH
Q 020686          124 FFVVDFTLEELKTLRAKQRYSFRDQQYNGKFPIITFEEYISIALDAQRVVGIYPEMKNPVFINQHVKWADGKKFEDKFVD  203 (322)
Q Consensus       124 ~~i~~~t~~el~~l~~~~~~~~r~~~~~~~~~iptL~e~l~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~~~~~v~~  203 (322)
                       .+.++|++|+++++..          .+ +++|||+|+|+.+++++ .+.++||+|.... .      ....++..+++
T Consensus        65 -~i~~~t~~el~~~~~~----------~~-~~iptL~evl~~~~~~~-~~~l~iEiK~~~~-~------~~~~~~~~l~~  124 (237)
T cd08583          65 -NTKPLSYEEFKSKKIY----------GK-YTPMDFKDVIDLLKKYP-DVYIVTDTKQDDD-N------DIKKLYEYIVK  124 (237)
T ss_pred             -cccCCCHHHHhhcccc----------CC-CCCCCHHHHHHHHHhCC-CeEEEEEecCCCc-c------cHHHHHHHHHH
Confidence             5899999999997642          23 58999999999998542 4789999997532 0      11346778899


Q ss_pred             HHHHcC--CCCccccccccCCCEEEeccChhHHHHHhhcCCCCe-EEEEeccCccCCCCcccccccccHHHHHHHHhhcc
Q 020686          204 TLKKYG--YKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTDSPK-IFLIDDVDILTEDTNQSYSEITSDAYLNYIKEYCV  280 (322)
Q Consensus       204 ~l~~~~--~~~~~~~~~~~~~rv~i~Sf~~~~l~~~~~~~~~~~-v~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  280 (322)
                      .+++++  +.          +|++|+||++.+|+.+++..|... .++......           .......+.+..   
T Consensus       125 ~~~~~~~~~~----------~~v~~~SF~~~~L~~~~~~~p~~~~~~~~~~~~~-----------~~~~~~~~~~~~---  180 (237)
T cd08583         125 EAKEVDPDLL----------DRVIPQIYNEEMYEAIMSIYPFKSVIYTLYRQDS-----------IRLDEIIAFCYE---  180 (237)
T ss_pred             HHHhhccccc----------ceeEEEecCHHHHHHHHHhCCCcceeeEeccccc-----------cchHHHHHHHHH---
Confidence            998863  43          489999999999999999977533 333221100           000111222221   


Q ss_pred             ccCCCcceeeecCCCCCCCChHHHHHHHHcCCeEEEEeCCCC
Q 020686          281 GIGPWKDTVVPVANNYSQTPTDLVARAHALDLQIHIGNTTTG  322 (322)
Q Consensus       281 ~i~~~~~~~~~~~~~~~~~~~~~v~~ah~~Gl~V~vWTvn~~  322 (322)
                       ++..  .+.+   ++...++++++.+|++|++|++||||+|
T Consensus       181 -~~~~--~~~~---~~~~~~~~~v~~~~~~Gl~v~vwTVn~~  216 (237)
T cd08583         181 -NGIK--AVTI---SKNYVNDKLIEKLNKAGIYVYVYTINDL  216 (237)
T ss_pred             -cCCc--EEEe---chhhcCHHHHHHHHHCCCEEEEEeCCCH
Confidence             2221  2222   3456799999999999999999999985

This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.

>cd08613 GDPD_GDE4_like_1 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial homologs of mammalian glycerophosphodiester phosphodiesterase GDE4

Probab=100.00  E-value=7.6e-38  Score=285.97  Aligned_cols=221  Identities=23%  Similarity=0.298  Sum_probs=163.2

Q ss_pred             CCCCCeEEeeCCCCCC----------------------CchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCCcc
Q 020686           40 QTSRPYNLAHRGSNGE----------------------FPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDD   97 (322)
Q Consensus        40 ~~~~p~iiaHRG~~~~----------------------~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l~r   97 (322)
                      ....|.+|||||++..                      +||||++||++|++.|+|+||||||+||||++||+||.+|+|
T Consensus        20 ~~~~p~iiaHRG~~~~~~~~~v~~~~~t~~~~~~~~~~~pENTl~Af~~A~~~Gad~IE~DV~lTkDg~lVV~HD~tL~R   99 (309)
T cd08613          20 PGGKPKLLAHRGLAQTFDREGVENDTCTAERIDPPTHDYLENTIASMQAAFDAGADVVELDVHPTKDGEFAVFHDWTLDC   99 (309)
T ss_pred             CCCCceEEeccCCCcccccccccccccccccccCcCCCCCchHHHHHHHHHHcCCCEEEEEEEEccCCeEEEEecCcccc
Confidence            4678999999999664                      399999999999999999999999999999999999999999


Q ss_pred             ccCCCCcccccccccccccCCcccccceeeccCHHHHccCcccccccCCC-c--ccC--CCccccCHHHHHHHHHhcCCc
Q 020686           98 TTNIADHKEFADRKRTCMVQGVNTTGFFVVDFTLEELKTLRAKQRYSFRD-Q--QYN--GKFPIITFEEYISIALDAQRV  172 (322)
Q Consensus        98 ~t~~~~~~~~~~~~~~~~~~g~~~~g~~i~~~t~~el~~l~~~~~~~~r~-~--~~~--~~~~iptL~e~l~~~~~~~~~  172 (322)
                      +|++.                    | .|.++|++||++|+++.++.... .  .+.  +..++|||+|+|+.+++    
T Consensus       100 ~T~g~--------------------g-~V~dlTlaEL~~Ld~g~~~~~~~g~~~p~~~~~~~~IPTL~EvL~~~~~----  154 (309)
T cd08613         100 RTDGS--------------------G-VTRDHTMAELKTLDIGYGYTADGGKTFPFRGKGVGMMPTLDEVFAAFPD----  154 (309)
T ss_pred             ccCCC--------------------C-chhhCCHHHHhhCCcCcccccccccccccccCCCCCCcCHHHHHHhcCC----
Confidence            99987                    4 79999999999999987653210 1  111  22479999999998842    


Q ss_pred             ceEeeeeCCcccccccccccCcchHHHHHHHHHHHcCCCCccccccccCCCEEEeccC--hhHHHHHhhcCCCCeEEEEe
Q 020686          173 VGIYPEMKNPVFINQHVKWADGKKFEDKFVDTLKKYGYKGAYMSKEWLKQPIFIQSFA--PTSLVYISNKTDSPKIFLID  250 (322)
Q Consensus       173 ~~l~iEiK~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~rv~i~Sf~--~~~l~~~~~~~~~~~v~l~~  250 (322)
                      .+++||||.+.           ....+.+.+++++++..           ++.+.||+  +..+++++++.|...++--.
T Consensus       155 ~~l~IEiK~~~-----------~~~~~~v~~~i~~~~~~-----------r~~v~sf~s~~~~l~~~r~l~P~~~~~s~~  212 (309)
T cd08613         155 RRFLINFKSDD-----------AAEGELLAEKLATLPRK-----------RLQVLTVYGGDKPIAALRELTPDLRTLSKA  212 (309)
T ss_pred             CcEEEEeCCCC-----------ccHHHHHHHHHHhcCcc-----------ceEEEEEECCHHHHHHHHHHCCCCceeccc
Confidence            67999999753           23568899999998864           57777777  77799999998766553111


Q ss_pred             ccCccCCCCcccccccccHHHHHHHHhhccccCCCc---cee-eec-CCCCCCC-ChHHHHHHHHcCCeEEEE-------
Q 020686          251 DVDILTEDTNQSYSEITSDAYLNYIKEYCVGIGPWK---DTV-VPV-ANNYSQT-PTDLVARAHALDLQIHIG-------  317 (322)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~---~~~-~~~-~~~~~~~-~~~~v~~ah~~Gl~V~vW-------  317 (322)
                      ..               ..-.+.++.....+..|..   ..+ .|. ...+... ++.+++++|++|.+|++|       
T Consensus       213 ~~---------------~~~~~~~~~~~~~g~~p~~~~~~~~~vP~~~~~~~~~w~~~f~~~~~~~g~~V~~~~~~~~~~  277 (309)
T cd08613         213 SM---------------KDCLIEYLALGWTGYVPDSCRNTTLLIPLNYAPWLWGWPNRFLARMEAAGTRVILVGPYTGGE  277 (309)
T ss_pred             ch---------------HHHHHHHHhhcccccCCccccCCeEecCccccceEEeCCHHHHHHHHHcCCeEEEEecccCCc
Confidence            10               0011222221122333332   222 233 1223455 899999999999999999       


Q ss_pred             ---eCCCC
Q 020686          318 ---NTTTG  322 (322)
Q Consensus       318 ---Tvn~~  322 (322)
                         |||+|
T Consensus       278 ~~~~~d~~  285 (309)
T cd08613         278 FSEGFDTP  285 (309)
T ss_pred             ccCCCCCH
Confidence               99987

This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial homologs of mammalian GDE4, a transmembrane protein whose cellular function has not been elucidated yet.

>COG0584 UgpQ Glycerophosphoryl diester phosphodiesterase [Energy production and conversion]

Probab=100.00  E-value=9.2e-37  Score=276.90  Aligned_cols=222  Identities=36%  Similarity=0.483  Sum_probs=171.8

Q ss_pred             CCeEEeeCCCCCCCchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCCccccCCCCcccccccccccccCCcccc
Q 020686           43 RPYNLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVNTT  122 (322)
Q Consensus        43 ~p~iiaHRG~~~~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~~~~~g~~~~  122 (322)
                      .|.+|||||+++.+||||++||++|++.|+|+||+|||+||||++||+||.+++||+++.                    
T Consensus         5 ~~~iiaHRG~s~~~PENTl~Af~~A~~~gad~iE~Dv~lTkDg~lVv~HD~~~drt~~~~--------------------   64 (257)
T COG0584           5 MPLIIAHRGASGYAPENTLAAFELAAEQGADYIELDVQLTKDGVLVVIHDETLDRTTNGL--------------------   64 (257)
T ss_pred             ceEEEeccCcCCCCCcchHHHHHHHHHcCCCEEEeeccCccCCcEEEecccchhhhccCc--------------------
Confidence            689999999999999999999999999999999999999999999999999999999987                    


Q ss_pred             cceeeccCHHHHccCcccccccCCCcccCCCccccCHHHHHHHHHhcCCcceEeeeeCCcccccccccccCcch-HHHHH
Q 020686          123 GFFVVDFTLEELKTLRAKQRYSFRDQQYNGKFPIITFEEYISIALDAQRVVGIYPEMKNPVFINQHVKWADGKK-FEDKF  201 (322)
Q Consensus       123 g~~i~~~t~~el~~l~~~~~~~~r~~~~~~~~~iptL~e~l~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~-~~~~v  201 (322)
                      | .+.++|++|+++++.+.+.   ...+  ...+|||+|+++.+ .  ..+++++|+|.+.....       .. .+..+
T Consensus        65 ~-~~~~~~~~~~~~~~~~~~~---~~~~--~~~ip~l~~~l~~~-~--~~~~l~ieiK~~~~~~~-------~~~~~~~~  128 (257)
T COG0584          65 G-TVRDLTLAELKRLDAGSFR---IPTF--GEEIPTLEELLEAT-G--RKIGLYIEIKSPGFHPQ-------EGKILAAL  128 (257)
T ss_pred             c-ccccCChhhhcCcccCccc---CCCC--CCccCCHHHHHHHh-c--ccCCeEEEecCCCcccc-------hhhhHHHH
Confidence            3 5779999999999955432   2333  35999999999988 3  34899999999764321       12 46677


Q ss_pred             HHHHHHcCCCCccccccccCCCEEEeccChhHHHHHhhcCC-CCeEEEEeccCccCCCCcccccccccHHHHHHHHhhcc
Q 020686          202 VDTLKKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTD-SPKIFLIDDVDILTEDTNQSYSEITSDAYLNYIKEYCV  280 (322)
Q Consensus       202 ~~~l~~~~~~~~~~~~~~~~~rv~i~Sf~~~~l~~~~~~~~-~~~v~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  280 (322)
                      ++.+.+.....       ..++++++||+...+.++++..| .+.++++.....        |.....+..+..+..++.
T Consensus       129 ~~~~~~~~~~~-------~~~~v~~~Sf~~~~l~~~~~~~p~~~~~~l~~~~~~--------~~~~~~~~~l~~~~~~~~  193 (257)
T COG0584         129 LALLKRYGGTA-------ADDRVILSSFDHAALKRIKRLAPDLPLGLLLDATDQ--------YDWMELPRALKEVALYAD  193 (257)
T ss_pred             HHHHHHhcccC-------CCCceEEEecCHHHHHHHHHhCcCCceEEEEcccch--------hhhhhccchhhHHHhhhc
Confidence            77777664311       12589999999999999999876 677777665310        222233345666777777


Q ss_pred             ccCCCcceeeecCCCCCCCChHHHHHHHHcCCeEEEEeCCCC
Q 020686          281 GIGPWKDTVVPVANNYSQTPTDLVARAHALDLQIHIGNTTTG  322 (322)
Q Consensus       281 ~i~~~~~~~~~~~~~~~~~~~~~v~~ah~~Gl~V~vWTvn~~  322 (322)
                      ++++....+.+       ..+.+++.+|+.|+.|++||||++
T Consensus       194 ~~~~~~~~~~~-------~~~~~v~~~~~~gl~v~~~tv~~~  228 (257)
T COG0584         194 GVGPDWAMLAE-------LLTELVDDAHAAGLKVHVWTVNEE  228 (257)
T ss_pred             ccCcccceecc-------cccHHHHHHHhCCCeEEEEecCcH
Confidence            77664322211       147899999999999999999975

>PF03009 GDPD: Glycerophosphoryl diester phosphodiesterase family; InterPro: IPR004129 Glycerophosphoryl diester phosphodiesterases display broad specificity for glycerophosphodiesters; glycerophosphocholine, glycerophosphoethanolamine, glycerophosphoglycerol, and bis(glycerophosphoglycerol) all of which are are hydrolysed by this enzyme

Probab=100.00  E-value=2.7e-36  Score=271.40  Aligned_cols=227  Identities=32%  Similarity=0.412  Sum_probs=145.7

Q ss_pred             eCCCCCCCchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCCccccCCCCcccccccccccccCCcccccceeec
Q 020686           49 HRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVNTTGFFVVD  128 (322)
Q Consensus        49 HRG~~~~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~~~~~g~~~~g~~i~~  128 (322)
                      |||+++.+||||++||+.|++.|+++||+|||+||||+|||+||.++.|+|++.                    | .|.+
T Consensus         1 HRG~~~~~pENTl~af~~A~~~G~~~iE~Dv~lTkDg~~Vv~HD~~l~r~~~~~--------------------~-~i~~   59 (256)
T PF03009_consen    1 HRGASGNAPENTLAAFRAAIELGADGIELDVQLTKDGVPVVFHDDTLDRTTGGD--------------------G-PISD   59 (256)
T ss_dssp             TTTTTTTSSTTSHHHHHHHHHTTSSEEEEEEEE-TTS-EEE-SSSBSTTTSSTE--------------------S-BGGG
T ss_pred             CCCCCCCChhhHHHHHHHHHHhCCCeEcccccccCCceeEeccCCeeeeecCCC--------------------c-eecc
Confidence            999999999999999999999999999999999999999999999999999987                    3 6999


Q ss_pred             cCHHHHccCc-ccc--cccCCCcccCCCccccCHHHHHHHHHhcCCcceEeeeeCCcccccccccccCcchHHHHHHHHH
Q 020686          129 FTLEELKTLR-AKQ--RYSFRDQQYNGKFPIITFEEYISIALDAQRVVGIYPEMKNPVFINQHVKWADGKKFEDKFVDTL  205 (322)
Q Consensus       129 ~t~~el~~l~-~~~--~~~~r~~~~~~~~~iptL~e~l~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~~~~~v~~~l  205 (322)
                      +||+||++++ ++.  ..+++.+.+....++|||+|+|+.+.+.+  ..+++++|........    ....+.+.++..+
T Consensus        60 ~t~~el~~l~~~~~~~~~~~~~~~~~~~~~i~tl~e~l~~~~~~~--~~~~i~~~~~~~~~~~----~~~~~~~~~~~~~  133 (256)
T PF03009_consen   60 LTYAELKKLRTLGSKNSPPFRGQRIPGKQKIPTLEEVLELCAKVK--LNLEIKIKSKDEIKDP----EFLKIVKDIVESV  133 (256)
T ss_dssp             S-HHHHTTSBESSTTTTCGGTTTTSCTCB--EBHHHHHHHHHTTT--SEEEEEEEECTTSHHH----HHHHHHHHHHHHH
T ss_pred             CCHHHHhhCcccccCCcccccccceecccccCcHHHHHHhhhhcc--ceeEEEEeecccccch----hhccccccccccc
Confidence            9999999999 433  34555665555578999999999955433  5666776643211100    0002344555555


Q ss_pred             HHcCCCCccccccccCCCEEEeccChhHHHHHhhcCC-CCeEEEEeccCccCCCCcccccccccHHHHHHHHhhccccCC
Q 020686          206 KKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTD-SPKIFLIDDVDILTEDTNQSYSEITSDAYLNYIKEYCVGIGP  284 (322)
Q Consensus       206 ~~~~~~~~~~~~~~~~~rv~i~Sf~~~~l~~~~~~~~-~~~v~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~  284 (322)
                      ......    .+.+...+++++||++.+++.+++..| .+.+++.......       +...........+...  .   
T Consensus       134 ~~~~~~----~~~~~~~~i~~~sf~~~~l~~l~~~~~~~~~~~l~~~~~~~-------~~~~~~~~~~~~~~~~--~---  197 (256)
T PF03009_consen  134 SDILKN----SKQALSRRIIISSFDPEALKQLKQRAPRYPVGFLFEQDDEA-------PADISLFELYKFVKCP--G---  197 (256)
T ss_dssp             HHCHHH----HHHHHCTSEEEEESCHHHHHHHHHHCTTSEEEEEESSCHHH-------HHH-CCHHHHHHHTTT--E---
T ss_pred             cccccc----cccccccccccccCcHHHHHHHHhcCCCceEEEEeccCccc-------cccchhhHHHHhhccc--c---
Confidence            544300    000112489999999999999999987 5666665432110       0000000111222111  1   


Q ss_pred             CcceeeecCCCCCC--CChHHHHHHHHcCCeEEEEeCCCC
Q 020686          285 WKDTVVPVANNYSQ--TPTDLVARAHALDLQIHIGNTTTG  322 (322)
Q Consensus       285 ~~~~~~~~~~~~~~--~~~~~v~~ah~~Gl~V~vWTvn~~  322 (322)
                          +......+..  .++++|+.+|++|+.|++||||++
T Consensus       198 ----~~~~~~~~~~~~~~~~~v~~~~~~g~~v~~wtvn~~  233 (256)
T PF03009_consen  198 ----FLASVWNYADRLGNPRLVQEAHKAGLKVYVWTVNDP  233 (256)
T ss_dssp             ----EEEEHGGGGHHCEBHHHHHHHHHTT-EEEEBSB-SH
T ss_pred             ----ccccccccccccccHHHHHHHHHCCCEEEEEecCCc
Confidence                1110001111  267899999999999999999985

; GO: 0008889 glycerophosphodiester phosphodiesterase activity, 0006071 glycerol metabolic process; PDB: 3I10_A 2P76_H 2OOG_F 3KS6_D 3KS5_A 2PZ0_B 1YDY_B 1T8Q_A 1O1Z_A 3L12_B ....

>cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins

Probab=100.00  E-value=4.1e-33  Score=240.76  Aligned_cols=171  Identities=31%  Similarity=0.401  Sum_probs=134.1

Q ss_pred             EEeeCCCCCCCchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCCccccCCCCcccccccccccccCCcccccce
Q 020686           46 NLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVNTTGFF  125 (322)
Q Consensus        46 iiaHRG~~~~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~~~~~g~~~~g~~  125 (322)
                      +|||||+++.+||||++||++|++.|+++||+||++||||++||+||                                 
T Consensus         1 i~aHRG~~~~~pent~~a~~~a~~~g~~~iE~Dv~~tkDg~~vv~Hd---------------------------------   47 (189)
T cd08556           1 IIAHRGASGEAPENTLAAFRKALEAGADGVELDVQLTKDGVLVVIHD---------------------------------   47 (189)
T ss_pred             CEeCCCCCCCCCchHHHHHHHHHHcCCCEEEEEeeEcCCCCEEEEcC---------------------------------
Confidence            58999999999999999999999999999999999999999999999                                 


Q ss_pred             eeccCHHHHccCcccccccCCCcccCCCccccCHHHHHHHHHhcCCcceEeeeeCCcccccccccccCcchHHHHHHHHH
Q 020686          126 VVDFTLEELKTLRAKQRYSFRDQQYNGKFPIITFEEYISIALDAQRVVGIYPEMKNPVFINQHVKWADGKKFEDKFVDTL  205 (322)
Q Consensus       126 i~~~t~~el~~l~~~~~~~~r~~~~~~~~~iptL~e~l~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~~~~~v~~~l  205 (322)
                                                    +|||+|+|+.+++   .+.+++|+|.+..         ...+++.+++++
T Consensus        48 ------------------------------i~tL~e~l~~~~~---~~~i~leiK~~~~---------~~~~~~~l~~~i   85 (189)
T cd08556          48 ------------------------------IPTLEEVLELVKG---GVGLNIELKEPTR---------YPGLEAKVAELL   85 (189)
T ss_pred             ------------------------------CCCHHHHHHhccc---CcEEEEEECCCCC---------chhHHHHHHHHH
Confidence                                          6699999999965   4889999998642         246899999999


Q ss_pred             HHcCCCCccccccccCCCEEEeccChhHHHHHhhcCCCCeEEEEeccCccCCCCcccccccccHHHHHHHHhhccccCCC
Q 020686          206 KKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTDSPKIFLIDDVDILTEDTNQSYSEITSDAYLNYIKEYCVGIGPW  285 (322)
Q Consensus       206 ~~~~~~~~~~~~~~~~~rv~i~Sf~~~~l~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~  285 (322)
                      ++++..+          +++++||++..+.++++..|...+.++.......      +    .. ........+.++.+ 
T Consensus        86 ~~~~~~~----------~v~i~s~~~~~l~~~~~~~p~~~~~~~~~~~~~~------~----~~-~~~~~~~~~~~v~~-  143 (189)
T cd08556          86 REYGLEE----------RVVVSSFDHEALRALKELDPEVPTGLLVDKPPLD------P----LL-AELARALGADAVNP-  143 (189)
T ss_pred             HHcCCcC----------CEEEEeCCHHHHHHHHHhCCCCcEEEEeecCccc------c----hh-hhHHHhcCCeEEcc-
Confidence            9998654          8999999999999999987765444433321100      0    00 00011112222222 


Q ss_pred             cceeeecCCCCCCCChHHHHHHHHcCCeEEEEeCCCC
Q 020686          286 KDTVVPVANNYSQTPTDLVARAHALDLQIHIGNTTTG  322 (322)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~v~~ah~~Gl~V~vWTvn~~  322 (322)
                               ++...++.+++.+|++|++|++||||++
T Consensus       144 ---------~~~~~~~~~i~~~~~~g~~v~~wtvn~~  171 (189)
T cd08556         144 ---------HYKLLTPELVRAAHAAGLKVYVWTVNDP  171 (189)
T ss_pred             ---------ChhhCCHHHHHHHHHcCCEEEEEcCCCH
Confidence                     3455789999999999999999999974

The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho

>cd08555 PI-PLCc_GDPD_SF Catalytic domain of phosphoinositide-specific phospholipase C-like phosphodiesterases superfamily

Probab=99.97  E-value=2.9e-31  Score=228.29  Aligned_cols=155  Identities=28%  Similarity=0.335  Sum_probs=121.9

Q ss_pred             EEeeCCCCCCCchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCCccccCCCCcccccccccccccCCcccccce
Q 020686           46 NLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVNTTGFF  125 (322)
Q Consensus        46 iiaHRG~~~~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~~~~~g~~~~g~~  125 (322)
                      +|||||+++.+||||++||+.|++.|+++||+||++|+||+|||+||.+++|+|.                         
T Consensus         1 iiaHRG~~~~~peNT~~af~~a~~~G~~~iE~DV~lt~Dg~lvv~HD~~~~r~~~-------------------------   55 (179)
T cd08555           1 VLSHRGYSQNGQENTLEAFYRALDAGARGLELDVRLTKDGELVVYHGPTLDRTTA-------------------------   55 (179)
T ss_pred             CEecCCCCCCCCccHHHHHHHHHHcCCCEEEEEEeEcCCCeEEEECCCccccccC-------------------------
Confidence            5899999999999999999999999999999999999999999999999988741                         


Q ss_pred             eeccCHHHHccCcccccccCCCcccCCCccccCHHHHHHHHHhc----CCcceEeeeeCCcccccccccccCcchHHHHH
Q 020686          126 VVDFTLEELKTLRAKQRYSFRDQQYNGKFPIITFEEYISIALDA----QRVVGIYPEMKNPVFINQHVKWADGKKFEDKF  201 (322)
Q Consensus       126 i~~~t~~el~~l~~~~~~~~r~~~~~~~~~iptL~e~l~~~~~~----~~~~~l~iEiK~~~~~~~~~~~~~~~~~~~~v  201 (322)
                                                 +.++|||+|+|+.++++    +..+.++||+|.+..        ....+++++
T Consensus        56 ---------------------------~~~~ptl~evl~~~~~~~~~~~~~~~l~iEiK~~~~--------~~~~~~~~~  100 (179)
T cd08555          56 ---------------------------GILPPTLEEVLELIADYLKNPDYTIILSLEIKQDSP--------EYDEFLAKV  100 (179)
T ss_pred             ---------------------------CCCCCCHHHHHHHHHhhhhcCCCceEEEEEeCCCCC--------cchHHHHHH
Confidence                                       14799999999999863    134889999997642        234678899


Q ss_pred             HHHHHHcCCCCccccccccCCCEEEeccChhHHHHHhhcCCCCeEEEEeccCccCCCCcccccccccHHHHHHHHhhccc
Q 020686          202 VDTLKKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTDSPKIFLIDDVDILTEDTNQSYSEITSDAYLNYIKEYCVG  281 (322)
Q Consensus       202 ~~~l~~~~~~~~~~~~~~~~~rv~i~Sf~~~~l~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  281 (322)
                      ++.+++++...       ..++++++||                .. +...          +.        .    .   
T Consensus       101 ~~~~~~~~~~~-------~~~~v~i~sf----------------~~-~~~~----------~~--------~----~---  131 (179)
T cd08555         101 LKELRVYFDYD-------LRGKVVLSSF----------------NA-LGVD----------YY--------N----F---  131 (179)
T ss_pred             HHHHHHcCCcc-------cCCCEEEEee----------------cc-cCCC----------hh--------c----c---
Confidence            99999987310       0148999999                00 0000          00        0    0   


Q ss_pred             cCCCcceeeecCCCCCCCChHHHHHHHHcCCeEEEEeCCC
Q 020686          282 IGPWKDTVVPVANNYSQTPTDLVARAHALDLQIHIGNTTT  321 (322)
Q Consensus       282 i~~~~~~~~~~~~~~~~~~~~~v~~ah~~Gl~V~vWTvn~  321 (322)
                       .           .....++++|+.+|++|++|++||||+
T Consensus       132 -~-----------~~~~~~~~~v~~~~~~g~~v~~wtvn~  159 (179)
T cd08555         132 -S-----------SKLIKDTELIASANKLGLLSRIWTVND  159 (179)
T ss_pred             -c-----------chhhcCHHHHHHHHHCCCEEEEEeeCC
Confidence             0           023458999999999999999999998

The PI-PLC-like phosphodiesterases superfamily represents the catalytic domains of bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13), eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11), glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria, as well as their uncharacterized homologs found in organisms ranging from bacteria and archaea to metazoans, plants, and fungi. PI-PLCs are ubiquitous enzymes hydrolyzing the membrane lipid phosphoinositides to yield two important second messengers, inositol phosphates and diacylglycerol (DAG). GP-GDEs play essential roles in glycerol metabolism and catalyze the hydrolysis of glycerophosph

>cd08578 GDPD_NUC-2_fungi Putative glycerophosphodiester phosphodiesterase domain of ankyrin repeat protein NUC-2 and similar proteins

Probab=99.95  E-value=1.2e-26  Score=213.00  Aligned_cols=229  Identities=12%  Similarity=0.115  Sum_probs=158.4

Q ss_pred             HHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCCccccCCCCcccccccccccccCCcccccceeeccCHHHHccCcc
Q 020686           60 TAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVNTTGFFVVDFTLEELKTLRA  139 (322)
Q Consensus        60 T~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~~~~~g~~~~g~~i~~~t~~el~~l~~  139 (322)
                      ...+|..|.++|+|+||+|||+||||+|||+||.++.++ ++.                    + +|.++|++||++++.
T Consensus        17 ~~~sfvtAsslgad~VE~DVqLTkDgvpVV~HD~~i~~t-~~~--------------------~-~V~dlTleqL~~l~~   74 (300)
T cd08578          17 DGNSFVTASSLSGEYLRVKVCVLKDGTPVVAPEWFVPVG-GIK--------------------L-LVSDLTAEQLESILD   74 (300)
T ss_pred             CchhHHHHHHcCCCEEEEEEEECcCCEEEEECCCceEec-CCc--------------------E-EeecCcHHHHhccCC
Confidence            466999999999999999999999999999999999775 443                    3 799999999999998


Q ss_pred             cccccCCC--------cccCCCccccCHHHHHHHHHhcCCcceEeeeeCCcccccccc------cccCcchHHHHHHHHH
Q 020686          140 KQRYSFRD--------QQYNGKFPIITFEEYISIALDAQRVVGIYPEMKNPVFINQHV------KWADGKKFEDKFVDTL  205 (322)
Q Consensus       140 ~~~~~~r~--------~~~~~~~~iptL~e~l~~~~~~~~~~~l~iEiK~~~~~~~~~------~~~~~~~~~~~v~~~l  205 (322)
                      +.++....        ..+. +.++|||+|+|+.+.   ..++++||||.|.......      ...+-+.+++.+++.+
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~-~~~~pTL~evL~~lp---~~iglNIEIK~P~~~e~~~~~~~~~~~~d~N~fvD~IL~~V  150 (300)
T cd08578          75 YSLDDLNSEISDMVDLKRLL-SSRVVSLETLLELLP---PSIQLDIQVLFPTAAEIASIPVKGSPLVDLNKFIDTVLLVV  150 (300)
T ss_pred             cccccccccccccchhhhhc-CCcCCCHHHHHHhhc---cCCeEEEEECCCChHHhhhccccccchhHHHHHHHHHHHHH
Confidence            76432100        0122 358999999999984   3599999999998653211      0112357899999999


Q ss_pred             HHcCCCCccccccccCCCEEEeccChhHHHHHhhcCC-CCeEEEEeccCccC----------------CCCccccccccc
Q 020686          206 KKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTD-SPKIFLIDDVDILT----------------EDTNQSYSEITS  268 (322)
Q Consensus       206 ~~~~~~~~~~~~~~~~~rv~i~Sf~~~~l~~~~~~~~-~~~v~l~~~~~~~~----------------~~~~~~~~~~~~  268 (322)
                      -++.....-  +.-..++|+|+||||++|..++-+.| +|..++........                ......|.+...
T Consensus       151 f~har~~~~--~~~~~R~IiFSSf~pdiC~~L~~KQp~yPV~fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~  228 (300)
T cd08578         151 FDHARYLRH--TPGSTRSIVFSSCNPEVCTILNWKQPNFPVFFAMNGLVRNNDTLSFDTPHHLDSLAVDPQKLNEADPRS  228 (300)
T ss_pred             HHHhhhhcc--cCCCCCceEEeeCCHHHHHHHHhcCCCCCEEEEecCCccccccccccccccccccccccccccccCchh
Confidence            877421000  00012589999999999999996654 67766655442110                011113444333


Q ss_pred             HHHHHHHHhhccccCCCcceeeecCCCCCCCChHHHHHHHHcCCeEEEEeCC
Q 020686          269 DAYLNYIKEYCVGIGPWKDTVVPVANNYSQTPTDLVARAHALDLQIHIGNTT  320 (322)
Q Consensus       269 ~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~ah~~Gl~V~vWTvn  320 (322)
                      . .++++..+|...+..+....   .+-+...|.+|+.+|++|+-+.+|+-+
T Consensus       229 ~-Si~~Av~fA~~~nL~Giv~~---~~~L~~~P~lV~~ik~~GL~lv~~g~~  276 (300)
T cd08578         229 R-SIKEAVRFAKNNNLLGLILP---YSLLNIVPQLVESIKSRGLLLIASGEP  276 (300)
T ss_pred             h-hHHHHHHHHHHcCCcEEEec---HHHHhhChHHHHHHHHcCCEEEEECCC
Confidence            2 45666667765554322221   133567899999999999999999864

This subfamily corresponds to a putative glycerophosphodiester phosphodiesterase domain (GDPD) present in Neurospora crassa ankyrin repeat protein NUC-2 and its Saccharomyces cerevisiae counterpart, Phosphate system positive regulatory protein PHO81. Some uncharecaterized NUC-2 sequence homologs are also included in this family. NUC-2 plays an important role in the phosphate-regulated signal transduction pathway in Neurospora crassa. It shows high similarity to a cyclin-dependent kinase inhibitory protein PHO81, which is part of the phosphate regulatory cascade in S. cerevisiae. Both NUC-2 and PHO81 have multi-domain architecture, including an SPX N-terminal domain following by several ankyrin repeats and a putative C-terminal GDPD domain with unknown function. Although the putative GDPD domain displays sequence homology to that of bacterial glycerophos

>KOG2258 consensus Glycerophosphoryl diester phosphodiesterase [Energy production and conversion]

Probab=99.92  E-value=2.3e-25  Score=208.71  Aligned_cols=221  Identities=26%  Similarity=0.350  Sum_probs=161.5

Q ss_pred             CCeEEeeCCCCCCCchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCCccccCCCCcccccccccccccCCcccc
Q 020686           43 RPYNLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVNTT  122 (322)
Q Consensus        43 ~p~iiaHRG~~~~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~~~~~g~~~~  122 (322)
                      ...+|+|||+++.+||||++||++|++.|+|.|||||++|+||++|++||.+..|++++..                   
T Consensus        68 ~~~i~~~rga~g~~penT~~A~~~a~~~Gad~ie~dV~~TsDg~~v~l~d~~~~r~~~v~~-------------------  128 (341)
T KOG2258|consen   68 GWLIIAHRGASGDAPENTLAAYKKAIADGADLIELDVQMTSDGVPVILHDSTTVRVTGVPE-------------------  128 (341)
T ss_pred             CceeEeccCCCCCCCcccHHHHHHHHHcCCcEEEeccccCCCCceEEeecCcceeeeccee-------------------
Confidence            6899999999999999999999999999999999999999999999999999999999873                   


Q ss_pred             cceeeccCHHHHccCcccccccCCCcccCCCccccCHHHHHHHHHhcCCcceEeeeeCCcccccccccccCcchHHHHHH
Q 020686          123 GFFVVDFTLEELKTLRAKQRYSFRDQQYNGKFPIITFEEYISIALDAQRVVGIYPEMKNPVFINQHVKWADGKKFEDKFV  202 (322)
Q Consensus       123 g~~i~~~t~~el~~l~~~~~~~~r~~~~~~~~~iptL~e~l~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~~~~~v~  202 (322)
                        .+.++||.|++++.....+++.... -...++|+|+|....+...  ++.+.-|.|              ..+.+.++
T Consensus       129 --~~~~lt~~e~~~l~~~~~~~~~~~~-~~~~~~~~l~e~v~~~~~~--n~~~l~d~~--------------~~~~~~vl  189 (341)
T KOG2258|consen  129 --IVFDLTWMELRKLGPKIENPFAGPI-ITLEKLLTLAEAVASVVGN--NVAMLNDVK--------------LLVVDKVL  189 (341)
T ss_pred             --eeccCCHHHHhccCccccCcccccc-cchhhhccHHHHHHHHHcC--Chhhhhhhh--------------hhhHHHHH
Confidence              4899999999999988765431111 1235899999999888754  244555555              14678888


Q ss_pred             HHHHHcCCCCccccccccCCCEEEeccChhHHHHHhhcCCCCeEEEEeccCccCCCCcccccccccHHHHHHHHhhcccc
Q 020686          203 DTLKKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTDSPKIFLIDDVDILTEDTNQSYSEITSDAYLNYIKEYCVGI  282 (322)
Q Consensus       203 ~~l~~~~~~~~~~~~~~~~~rv~i~Sf~~~~l~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i  282 (322)
                      +.+++.+....+      .+++++|||++.++.++++..+.   +++++. +.       ++.   ....+.++.++.++
T Consensus       190 ~~l~~~~~~~~~------~~kv~v~s~~~~~l~~~~~~~~~---~~i~~~-~~-------~~~---ls~~~dik~~~~~~  249 (341)
T KOG2258|consen  190 EALKNATSDFSL------YDKVLVQSFNPIVLYRLKKLDPF---ILIGDT-WR-------FTF---LSGIEDIKKRAFAV  249 (341)
T ss_pred             HHHHHHhcCCCc------cceEEEEecCcHHHHHhccCCce---EEecce-ec-------chh---hccchhhhccccee
Confidence            888887665431      35899999999999999998766   222221 10       000   01123455556666


Q ss_pred             CCCcceeeecCCCCCC-CChHHHHHHHHcCCeEEEEeCCC
Q 020686          283 GPWKDTVVPVANNYSQ-TPTDLVARAHALDLQIHIGNTTT  321 (322)
Q Consensus       283 ~~~~~~~~~~~~~~~~-~~~~~v~~ah~~Gl~V~vWTvn~  321 (322)
                      ..+...+.+....... ....++...++.++.|+++..|.
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~  289 (341)
T KOG2258|consen  250 VSSKLAIFPVSDSLVLAITKNVVAPLQKLNLVVYVEVFNN  289 (341)
T ss_pred             eechHHHHHHHHHHhhhhhcceeeehhcCCcEEEEEEeec
Confidence            6666555554222222 23467888888888888887764

>cd08584 PI-PLCc_GDPD_SF_unchar2 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases

Probab=99.88  E-value=1.4e-21  Score=166.96  Aligned_cols=154  Identities=21%  Similarity=0.260  Sum_probs=112.0

Q ss_pred             EEeeCCCCCCCchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCCccccCCCCcccccccccccccCCcccccce
Q 020686           46 NLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVNTTGFF  125 (322)
Q Consensus        46 iiaHRG~~~~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~~~~~g~~~~g~~  125 (322)
                      +|||||       ||+.||++|++.  |+||+|||+| ||++||+||.+++                             
T Consensus         1 IiAHRG-------NTl~AF~~A~~~--dgvE~DVr~t-Dg~lVV~HD~~l~-----------------------------   41 (192)
T cd08584           1 IIAHRG-------NTITALKRTFEN--FGVETDIRDY-GGQLVISHDPFVK-----------------------------   41 (192)
T ss_pred             CCccch-------HHHHHHHHHHHC--CEEEEEEEee-CCeEEEECCCCCC-----------------------------
Confidence            589999       999999999998  9999999999 9999999999883                             


Q ss_pred             eeccCHHHHccCcccccccCCCcccCCCccccCHHHHHHHHHhcCCcceEeeeeCCcccccccccccCcchHHHHHHHHH
Q 020686          126 VVDFTLEELKTLRAKQRYSFRDQQYNGKFPIITFEEYISIALDAQRVVGIYPEMKNPVFINQHVKWADGKKFEDKFVDTL  205 (322)
Q Consensus       126 i~~~t~~el~~l~~~~~~~~r~~~~~~~~~iptL~e~l~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~~~~~v~~~l  205 (322)
                                                   ++|||+|+|+.+.+    ..+++|||.+             .+++++.+++
T Consensus        42 -----------------------------~~PtLeEvL~~~~~----~~l~inIK~~-------------~l~~~l~~li   75 (192)
T cd08584          42 -----------------------------NGELLEDWLKEYNH----GTLILNIKAE-------------GLELRLKKLL   75 (192)
T ss_pred             -----------------------------CCCCHHHHHHhccc----ccEEEEECch-------------hHHHHHHHHH
Confidence                                         35899999998853    3588999952             4789999999


Q ss_pred             HHcCCCCccccccccCCCEEEeccChhHHHHHhhcCCCCeEEEEeccCccCCCCcccccccccHHHHHHHHhhccccCCC
Q 020686          206 KKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTDSPKIFLIDDVDILTEDTNQSYSEITSDAYLNYIKEYCVGIGPW  285 (322)
Q Consensus       206 ~~~~~~~~~~~~~~~~~rv~i~Sf~~~~l~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~  285 (322)
                      +++++.+          +++|+||++..+.+++.--+...+-..+..             ..    ..++.-+...-+.|
T Consensus        76 ~~~~~~~----------~vi~ssf~~~~l~~~~~~~~~i~tr~Se~E-------------~~----~~~~~~~~~~~~VW  128 (192)
T cd08584          76 AEYGITN----------YFFLDMSVPDIIKYLENGEKRTATRVSEYE-------------PI----PTALSLYEKADWVW  128 (192)
T ss_pred             HhcCCcc----------eEEEEcCCHHHHHHHhcCCCeeEEeecccc-------------cc----hHHHHhhccccEEE
Confidence            9999864          899999999999999874321111111100             00    01111111111233


Q ss_pred             cceeeecCCCCCCCChHHHHHHHHcCCeEEE
Q 020686          286 KDTVVPVANNYSQTPTDLVARAHALDLQIHI  316 (322)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~v~~ah~~Gl~V~v  316 (322)
                      .+.+     ...-++.+.++...++|.+|..
T Consensus       129 ~D~f-----~~~~~~~~~~~~~~~~~~~~c~  154 (192)
T cd08584         129 IDSF-----TSLWLDNDLILKLLKAGKKICL  154 (192)
T ss_pred             Eecc-----cccCCCHHHHHHHHHCCcEEEE
Confidence            3332     3455688999999999998864

This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.

>cd08577 PI-PLCc_GDPD_SF_unchar3 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases

Probab=99.27  E-value=2.1e-11  Score=108.43  Aligned_cols=96  Identities=17%  Similarity=0.204  Sum_probs=71.3

Q ss_pred             HHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCCccccCCCCcccccccccccccCCcccccceeeccCHHHHccCcccccc
Q 020686           64 YMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVNTTGFFVVDFTLEELKTLRAKQRY  143 (322)
Q Consensus        64 f~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~~~~~g~~~~g~~i~~~t~~el~~l~~~~~~  143 (322)
                      |..|++.||++||.||+++ ||+++|.||..+-+. +.                       -+.++++++|.++..... 
T Consensus        15 l~~Al~~g~~svEaDV~l~-dg~l~V~Hd~~~l~~-~~-----------------------tl~~Lyl~pL~~~l~~~n-   68 (228)
T cd08577          15 LYDALSAGFGSIEADVWLV-NGDLLVAHDEVDLSP-AR-----------------------TLESLYLDPLLEILDQNN-   68 (228)
T ss_pred             hHHHHHcCCCEEEEeEEEE-CCEEEEEcChhHcCc-cC-----------------------CHHHHhHHHHHHHHHHcC-
Confidence            6779999999999999999 999999999988766 21                       388999999988654321 


Q ss_pred             cCCCcccCCCccccCHHHHHHHHHhcCCcceEeeeeCCcccccccccccCcchHHHHHHHHHHHcCCCC
Q 020686          144 SFRDQQYNGKFPIITFEEYISIALDAQRVVGIYPEMKNPVFINQHVKWADGKKFEDKFVDTLKKYGYKG  212 (322)
Q Consensus       144 ~~r~~~~~~~~~iptL~e~l~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~  212 (322)
                              +  ...         ......+.++||+|....        ..-.++..+++.+++.++..
T Consensus        69 --------~--~~~---------~~~~~~l~LlIDiKt~g~--------~t~~~l~~~L~~~~~~~~~~  110 (228)
T cd08577          69 --------G--QAY---------NDPEQPLQLLIDIKTDGE--------STYPALEEVLKPYIDIGYLS  110 (228)
T ss_pred             --------C--CCC---------CCCCCceEEEEEECCCCh--------HHHHHHHHHHHHHHhcCcee
Confidence                    1  111         222345899999998652        12356778888888887753

This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.

>cd08592 PI-PLCc_gamma Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma

Probab=98.67  E-value=1e-07  Score=83.92  Aligned_cols=43  Identities=30%  Similarity=0.356  Sum_probs=40.3

Q ss_pred             CCCchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCCc
Q 020686           54 GEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLD   96 (322)
Q Consensus        54 ~~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l~   96 (322)
                      -..+|||+.||++|++.|+++||+||+-++||+|||+||.++.
T Consensus        25 Ql~~ess~eay~~AL~~GcR~vElDvwdg~dgePvV~HG~tlt   67 (229)
T cd08592          25 QLSSESSLEAYARCLRMGCRCIELDCWDGPDGMPIIYHGHTLT   67 (229)
T ss_pred             ccCCccCHHHHHHHHHhCCCEEEEEeecCCCCCEEEEeCCcCC
Confidence            4778999999999999999999999999999999999998773

This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain.The PLC catalytic core domain is a TIM barrel with two highl

>cd08576 GDPD_like_SMaseD_PLD Glycerophosphodiester phosphodiesterase-like domain of spider venom sphingomyelinases D, bacterial phospholipase D, and similar proteins

Probab=98.60  E-value=4.1e-07  Score=81.99  Aligned_cols=43  Identities=28%  Similarity=0.316  Sum_probs=36.4

Q ss_pred             EEeeCCCCCCCchhHHHHHHHHHHcCCCEEEeeeeEcCCCeE-EEEeCCCC
Q 020686           46 NLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVL-ICHHDVFL   95 (322)
Q Consensus        46 iiaHRG~~~~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~-Vv~HD~~l   95 (322)
                      +||||       =||+..+..++..||..||+||...++|.+ ..+||.-.
T Consensus         2 ~iaHm-------Vn~~~~v~~~l~~GANaiE~Dv~f~~~~~~~~~~Hg~pc   45 (265)
T cd08576           2 AIAHM-------VNDLEGVDDALDHGANAIEIDVTFWSNGTGWWADHDVPC   45 (265)
T ss_pred             cchhh-------hccHHHHHHHHHcCCCceeEEEEEccCCcEEEeeCCCcc
Confidence            46776       489999999999999999999999999887 56777544

This subfamily corresponds to the glycerophosphodiester phosphodiesterase-like domain (GDPD-like) present in sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.4) from spider venom, the Corynebacterium pseudotuberculosis Phospholipase D (PLD)-like protein from pathogenic bacteria, and the Ajellomyces capsulatus H143 PLD-like protein from ascomycetes. Spider SMases D and bacterial PLD proteins catalyze the Mg2+-dependent hydrolysis of sphingomyelin producing choline and ceramide 1-phosphate (C1P), which possess a number of biological functions, such as regulating cell proliferation and apoptosis, participating in inflammatory responses, and playing a key role in phagocytosis. In the presence of Mg2+, SMases D can function as lysophospholipase D and hydrolyze lysophosphatidylcholine (LPC) to choline

>cd08627 PI-PLCc_gamma1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma1

Probab=98.57  E-value=2.5e-07  Score=81.25  Aligned_cols=42  Identities=29%  Similarity=0.348  Sum_probs=39.9

Q ss_pred             CCCchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCC
Q 020686           54 GEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFL   95 (322)
Q Consensus        54 ~~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l   95 (322)
                      -..+|||+.+|.+|++.|++.||+||+-++||+|||+|+.++
T Consensus        25 Ql~~~ss~e~y~~aL~~GcR~vElD~wdg~dgePvV~Hg~tl   66 (229)
T cd08627          25 QFSSESSLEAYARCLRMGCRCIELDCWDGPDGMPVIYHGHTL   66 (229)
T ss_pred             ccCCcccHHHHHHHHHhCCCEEEEEeecCCCCCEEEEeCCcC
Confidence            467899999999999999999999999999999999999887

This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain. The PLC catalytic core domain is a TIM barrel with tw

>KOG2421 consensus Predicted starch-binding protein [General function prediction only]

Probab=98.05  E-value=4.8e-07  Score=87.30  Aligned_cols=61  Identities=30%  Similarity=0.363  Sum_probs=52.7

Q ss_pred             CCCCCeEEeeCCCCC-------CCchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCCccccC
Q 020686           40 QTSRPYNLAHRGSNG-------EFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTN  100 (322)
Q Consensus        40 ~~~~p~iiaHRG~~~-------~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l~r~t~  100 (322)
                      +...-+.++|||...       ...|||+..+..+++.|+|++|+|||+|+|.++|++||..+...-.
T Consensus       321 ~~~~~l~~g~rg~g~sy~~~~~~~~ent~~~~~~~~~~~ad~ve~dvqlt~D~~~vvyh~f~~~~~~~  388 (417)
T KOG2421|consen  321 KNGLSLNTGHRGNGTSYTVLSQVLRENTIVIVDNVLELGADLVEMDVQLTKDLVPVVYHDFVLLVSVI  388 (417)
T ss_pred             ccchhhhccCCcCCchhhhhhhhhccceeeeehhHHHhhhhHHHhhcccccCCceeeeccceeEEeec
Confidence            345567799999843       4789999999999999999999999999999999999988866533

>smart00148 PLCXc Phospholipase C, catalytic domain (part); domain X

Probab=97.94  E-value=7.4e-05  Score=61.15  Aligned_cols=43  Identities=21%  Similarity=0.386  Sum_probs=39.9

Q ss_pred             CCCCchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCC
Q 020686           53 NGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFL   95 (322)
Q Consensus        53 ~~~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l   95 (322)
                      ...+.+|+..+|..+++.|++++|+||+.++||+++++|+.++
T Consensus        23 ~~~~~~~q~~~i~~qL~~GvR~~dirv~~~~~~~~~v~Hg~~~   65 (135)
T smart00148       23 KQLWGESSVEGYIQALDHGCRCVELDCWDGPDGEPVIYHGHTF   65 (135)
T ss_pred             ccccCcccHHHHHHHHHhCCCEEEEEcccCCCCCEEEEECCcc
Confidence            4577899999999999999999999999999999999999765

Phosphoinositide-specific phospholipases C. These enzymes contain 2 regions (X and Y) which together form a TIM barrel-like structure containing the active site residues. Phospholipase C enzymes (PI-PLC) act as signal transducers that generate two second messengers, inositol-1,4,5-trisphosphate and diacylglycerol. The bacterial enzyme [6] appears to be a homologue of the mammalian PLCs.

>cd08597 PI-PLCc_PRIP_metazoa Catalytic domain of metazoan phospholipase C related, but catalytically inactive protein

Probab=97.87  E-value=1.5e-05  Score=71.74  Aligned_cols=42  Identities=21%  Similarity=0.317  Sum_probs=38.0

Q ss_pred             CCchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCCc
Q 020686           55 EFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLD   96 (322)
Q Consensus        55 ~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l~   96 (322)
                      ..-+-|+.+|.+|++.|+++||+||+-++||+|||+|+.++-
T Consensus        26 l~~~ss~~~y~~aL~~GcR~vElD~w~g~~gepvV~Hg~tlt   67 (260)
T cd08597          26 LRGPSSVEGYVRALQRGCRCVELDCWDGPNGEPVIYHGHTLT   67 (260)
T ss_pred             ecCccCHHHHHHHHHhCCCEEEEEeEcCCCCCEEEEeCCccc
Confidence            445668899999999999999999999999999999998763

This family corresponds to the catalytic domain present in metazoan phospholipase C related, but catalytically inactive proteins (PRIP), which belong to a group of novel Inositol 1,4,5-trisphosphate (InsP3) binding protein. PRIP has a primary structure and domain architecture, incorporating a pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain with highly conserved X- and Y-regions split by a linker sequence, and a C-terminal C2 domain, similar to phosphoinositide-specific phospholipases C (PI-PLC, EC 3.1.4.11)-delta isoforms. Due to replacement of critical catalytic residues, PRIP do not have PLC enzymatic activity. PRIP consists of two subfamilies, PRIP-1(previously known as p130 or PLC-1), which is predominantly expressed in the brain, and PRIP-2 (previously known as PLC-2), which exhibits a relatively ubiquitous expression. Experiment

>cd08594 PI-PLCc_eta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta

Probab=97.39  E-value=0.00092  Score=58.96  Aligned_cols=41  Identities=24%  Similarity=0.447  Sum_probs=37.1

Q ss_pred             CCchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCC
Q 020686           55 EFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFL   95 (322)
Q Consensus        55 ~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l   95 (322)
                      ..-+.|..+|.+|+..|++.||+|++=-.||+|||.|..++
T Consensus        26 l~~~ss~e~Y~~aL~~GcRcvElD~wdg~~~ePvV~HG~tl   66 (227)
T cd08594          26 LLSQSRVDMYARVLQAGCRCVEVDCWDGPDGEPVVHHGYTL   66 (227)
T ss_pred             ccCcccHHHHHHHHHhCCcEEEEEeecCCCCCcEEeeCCCc
Confidence            45577889999999999999999999999999999997765

This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding motif,

>cd08633 PI-PLCc_eta2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta2

Probab=97.29  E-value=0.0013  Score=58.91  Aligned_cols=51  Identities=22%  Similarity=0.367  Sum_probs=41.6

Q ss_pred             CCCCeEEeeCCCCCCCchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCC
Q 020686           41 TSRPYNLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFL   95 (322)
Q Consensus        41 ~~~p~iiaHRG~~~~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l   95 (322)
                      .++.+..||.    ...+-|..+|..|+..|++.||+|++=-.||+|||.|..++
T Consensus        16 SHNTYL~g~Q----l~~~ss~e~y~~aL~~GcRcvElD~Wdg~~~eP~V~HG~tl   66 (254)
T cd08633          16 SHNTYLSGDQ----LMSQSRVDMYAWVLQAGCRCVEVDCWDGPDGEPIVHHGYTL   66 (254)
T ss_pred             CccccccCCc----cCCccCHHHHHHHHHcCCcEEEEEeecCCCCCcEEeeCCCc
Confidence            3444555443    44566789999999999999999999999999999998776

This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozyme 2. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding m

>cd08596 PI-PLCc_epsilon Catalytic domain of metazoan phosphoinositide-specific phospholipase C-epsilon

Probab=97.26  E-value=0.0015  Score=58.71  Aligned_cols=41  Identities=24%  Similarity=0.298  Sum_probs=36.9

Q ss_pred             CCchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCC
Q 020686           55 EFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFL   95 (322)
Q Consensus        55 ~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l   95 (322)
                      ..-+-|..+|.+|+..|+..||+|++=-.||+|||.|..++
T Consensus        26 l~~~ss~~~y~~aL~~GcRcvElD~wdG~~~eP~V~HG~tl   66 (254)
T cd08596          26 LKGESSVELYSQVLLTGCRCVELDCWDGDDGMPIIYHGHTL   66 (254)
T ss_pred             cCCccCHHHHHHHHHcCCcEEEEEeecCCCCCcEEeeCCCc
Confidence            34467799999999999999999999999999999998766

This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-epsilon isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-epsilon represents a class of mammalian PI-PLC that has an N-terminal CDC25 homology domain with a guanyl-nucleotide exchange factor (GFF) activity, a pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core

>cd08631 PI-PLCc_delta4 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta4

Probab=97.25  E-value=0.0015  Score=58.82  Aligned_cols=41  Identities=22%  Similarity=0.390  Sum_probs=36.7

Q ss_pred             CCchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCC
Q 020686           55 EFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFL   95 (322)
Q Consensus        55 ~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l   95 (322)
                      ..-+-|..+|.+|+..|++.||+|++--.||+|||.|..++
T Consensus        26 l~~~ss~e~y~~aL~~GcRcvElD~wdg~~~eP~V~HG~tl   66 (258)
T cd08631          26 LRGQSSVEGYIRALKRGCRCVEVDVWDGPNGEPIVYHGHTF   66 (258)
T ss_pred             ccCccCHHHHHHHHHcCCcEEEEEeecCCCCCcEEeeCCcc
Confidence            34466899999999999999999999999999999998766

This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta4 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This CD corresponds to the catalytic domain which

>cd08632 PI-PLCc_eta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta1

Probab=97.22  E-value=0.0017  Score=58.13  Aligned_cols=51  Identities=22%  Similarity=0.412  Sum_probs=40.6

Q ss_pred             CCCCeEEeeCCCCCCCchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCC
Q 020686           41 TSRPYNLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFL   95 (322)
Q Consensus        41 ~~~p~iiaHRG~~~~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l   95 (322)
                      .++.+..||.    ..-+-|..+|.+|+..|++.||+|++--.||+|||.|-.++
T Consensus        16 SHNTYL~g~Q----l~~~ss~e~y~~aL~~GcRcvElD~Wdg~~~eP~V~HG~Tl   66 (253)
T cd08632          16 SHNTYLTGDQ----LLSQSKVDMYARVLQAGCRCVEVDCWDGPDGEPVVHHGYTL   66 (253)
T ss_pred             CCCccccCCc----ccCcccHHHHHHHHHcCCcEEEEEeecCCCCCcEEeeCCCC
Confidence            3444444443    33456789999999999999999999999999999997665

This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding m

>cd08595 PI-PLCc_zeta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-zeta

Probab=97.20  E-value=0.0019  Score=58.14  Aligned_cols=51  Identities=18%  Similarity=0.294  Sum_probs=41.6

Q ss_pred             CCCCeEEeeCCCCCCCchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCC
Q 020686           41 TSRPYNLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFL   95 (322)
Q Consensus        41 ~~~p~iiaHRG~~~~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l   95 (322)
                      .++.+..+|.    ..-+-+..+|.+|+..|++.||+|++--.||+|||.|-.++
T Consensus        16 SHNTYL~g~Q----l~~~ss~e~y~~aL~~GcRcvElD~wdg~~~ep~v~HG~tl   66 (257)
T cd08595          16 SHNTYLVSDQ----LVGPSDLDGYVSALRKGCRCLEIDCWDGADNEPVVYHGYTL   66 (257)
T ss_pred             cccccccCCc----ccCcccHHHHHHHHHhCCcEEEEEeecCCCCCcEEecCCCc
Confidence            3444444443    44578899999999999999999999999999999997766

This family corresponds to the catalytic domain presenting in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-zeta isozyme. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-zeta represents a class of sperm-specific PI-PLC that has an N-terminal EF-hand domain, a PLC catalytic core domain, and a C-terminal C2 domain. The PLC catalytic core domain is a TIM barrel with two highly conserved regions (X and Y)

>cd08593 PI-PLCc_delta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta

Probab=97.13  E-value=0.0023  Score=57.75  Aligned_cols=41  Identities=29%  Similarity=0.380  Sum_probs=36.8

Q ss_pred             CCchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCC
Q 020686           55 EFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFL   95 (322)
Q Consensus        55 ~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l   95 (322)
                      ..-+-|..+|.+|+..|++.||+|++--.||+|||.|-.++
T Consensus        26 l~~~ss~~~y~~aL~~GcRcvElD~wdg~~~eP~v~HG~t~   66 (257)
T cd08593          26 LKGPSSTEAYIRALKKGCRCVELDCWDGPDGEPIIYHGHTL   66 (257)
T ss_pred             ccCCccHHHHHHHHHhCCcEEEEEeecCCCCCcEEeeCCcc
Confidence            44567899999999999999999999999999999997665

This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This CD corresponds to the catalytic domain which is

>cd08626 PI-PLCc_beta4 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta4

Probab=97.09  E-value=0.0026  Score=57.22  Aligned_cols=41  Identities=22%  Similarity=0.204  Sum_probs=36.0

Q ss_pred             CCchhHHHHHHHHHHcCCCEEEeeeeEcC--CCeEEEEeCCCC
Q 020686           55 EFPEETAAAYMRAIEEGADFIETDILASK--DGVLICHHDVFL   95 (322)
Q Consensus        55 ~~pENT~~Af~~A~~~G~d~iE~DV~lTk--Dg~~Vv~HD~~l   95 (322)
                      ..-+-|..+|.+|+..|++.||+||+=-.  ||+|||.|-.++
T Consensus        26 l~~~ss~~~y~~aL~~GcRcvElD~wdg~~~~~eP~V~HG~tl   68 (257)
T cd08626          26 FGGKSSVEMYRQVLLAGCRCIELDCWDGKGEDQEPIITHGKAM   68 (257)
T ss_pred             ccCCccHHHHHHHHHcCCcEEEEEecCCCCCCCCCEEeeCCCC
Confidence            44567899999999999999999999865  899999998776

This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 4. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho

>PF10223 DUF2181: Uncharacterized conserved protein (DUF2181); InterPro: IPR019356 This is region of approximately 250 residues with no known function

Probab=96.80  E-value=0.066  Score=48.06  Aligned_cols=38  Identities=26%  Similarity=0.324  Sum_probs=32.5

Q ss_pred             hhHHHHHHHHHHcCCCEEEeeeeEcC------CCeEEEEeCCCC
Q 020686           58 EETAAAYMRAIEEGADFIETDILASK------DGVLICHHDVFL   95 (322)
Q Consensus        58 ENT~~Af~~A~~~G~d~iE~DV~lTk------Dg~~Vv~HD~~l   95 (322)
                      -|+.+.+..|+...+.+||.||.+-+      +++||..|.+..
T Consensus        11 vNsk~~L~~aL~~~~~miEaDV~l~~~~~~~~~~~PIMahPP~~   54 (244)
T PF10223_consen   11 VNSKAELEEALSSDIMMIEADVLLGGLNTGNEDGIPIMAHPPAT   54 (244)
T ss_pred             cCCHHHHHHHhCCCCCEEEEEEEeecccCCCCCCCceeeCCCCC
Confidence            48899999999988999999999984      788999887543

>cd08630 PI-PLCc_delta3 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta3

Probab=96.66  E-value=0.0024  Score=57.48  Aligned_cols=42  Identities=24%  Similarity=0.289  Sum_probs=37.6

Q ss_pred             CCchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCCc
Q 020686           55 EFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLD   96 (322)
Q Consensus        55 ~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l~   96 (322)
                      ..-+-|..+|.+|+..|++.||+|++--.||+|||.|-.++-
T Consensus        26 l~~~ss~~~y~~aL~~GcRcvElD~wdg~~~eP~V~HG~tlt   67 (258)
T cd08630          26 IGGPSSTEAYVRAFAQGCRCVELDCWEGPGGEPVIYHGHTLT   67 (258)
T ss_pred             ccCcccHHHHHHHHHcCCcEEEEEeecCCCCCcEEeeCCccc
Confidence            344578999999999999999999999999999999998764

This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta3 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This family corresponds to the catalytic domain wh

>cd08558 PI-PLCc_eukaryota Catalytic domain of eukaryotic phosphoinositide-specific phospholipase C and similar proteins

Probab=96.64  E-value=0.003  Score=55.83  Aligned_cols=41  Identities=29%  Similarity=0.381  Sum_probs=37.4

Q ss_pred             CCchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCC
Q 020686           55 EFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFL   95 (322)
Q Consensus        55 ~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l   95 (322)
                      ...+-|..+|.+|++.|++.||+|++=-.||+|||.|-.++
T Consensus        26 l~~~Ss~~~y~~aL~~GcRcvElD~wdg~~~eP~v~HG~t~   66 (226)
T cd08558          26 LTGESSVEAYIRALLRGCRCVELDCWDGPDGEPVVYHGHTL   66 (226)
T ss_pred             cCCccCHHHHHHHHHhCCcEEEEEeecCCCCCeEEeeCCCC
Confidence            45667899999999999999999999999999999998766

This family corresponds to the catalytic domain present in eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) and similar proteins. The higher eukaryotic PI-PLCs play a critical role in most signal transduction pathways, controlling numerous cellular events such as cell growth, proliferation, excitation and secretion. They strictly require Ca2+ for the catalytic activity. They display a clear preference towards the hydrolysis of the more highly phosphorylated membrane phospholipids PI-analogues, phosphatidylinositol 4,5-bisphosphate (PIP2) and phosphatidylinositol-4-phosphate (PIP), to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein ki

>cd08599 PI-PLCc_plant Catalytic domain of plant phosphatidylinositide-specific phospholipases C

Probab=96.62  E-value=0.0033  Score=55.73  Aligned_cols=41  Identities=22%  Similarity=0.267  Sum_probs=36.3

Q ss_pred             CCchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCC
Q 020686           55 EFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFL   95 (322)
Q Consensus        55 ~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l   95 (322)
                      ..-+-|..+|..|++.|+..||+||+=..||+|+|.|..++
T Consensus        26 l~~~ss~~~y~~aL~~GcRcvElD~Wdg~~~ep~V~HG~t~   66 (228)
T cd08599          26 LSSRSSTAPIIEALLRGCRVIELDLWPGGRGDICVLHGGTL   66 (228)
T ss_pred             cCCccCHHHHHHHHHhCCCEEEEEeecCCCCCeEEEeCCCC
Confidence            34466788999999999999999999999999999998764

This family corresponds to the catalytic domain present in a group of phosphoinositide-specific phospholipases C (PI-PLC, EC 3.1.4.11) encoded by PLC genes from higher plants, which are homologs of mammalian PI-PLC in terms of overall sequence similarity and domain organization. Mammalian PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. The domain arrangement of plant PI-PLCs is structurally similar to the mammalian PLC-zeta isoform, whi

>cd08628 PI-PLCc_gamma2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma2

Probab=96.60  E-value=0.0025  Score=57.24  Aligned_cols=41  Identities=29%  Similarity=0.336  Sum_probs=36.8

Q ss_pred             CCchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCC
Q 020686           55 EFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFL   95 (322)
Q Consensus        55 ~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l   95 (322)
                      ..-+-|..+|..|+..|++.||+|++=-.||+|||.|..++
T Consensus        26 l~~~ss~~~y~~aL~~GcRcvElD~Wdg~~~eP~V~HG~t~   66 (254)
T cd08628          26 LRSESSTEAYIRCLRMGCRCIELDCWDGPDGKPIIYHGWTR   66 (254)
T ss_pred             eecCCCHHHHHHHHHcCCcEEEEEeecCCCCCeEEeeCCCc
Confidence            34466789999999999999999999999999999998776

This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozyme 2. PI-PLC is a signaling enzyme that hydrolyze the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain. The PLC catalytic core domain is a TIM barrel with tw

>cd08629 PI-PLCc_delta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta1

Probab=96.59  E-value=0.003  Score=56.81  Aligned_cols=42  Identities=21%  Similarity=0.256  Sum_probs=37.5

Q ss_pred             CCchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCCc
Q 020686           55 EFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLD   96 (322)
Q Consensus        55 ~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l~   96 (322)
                      ..-+-|..+|.+|+..|++.||+|++--.||+|||.|-.++-
T Consensus        26 l~~~ss~e~y~~aL~~GcRcvElD~wdg~~~eP~V~HG~tlt   67 (258)
T cd08629          26 LTGPSSTEAYIRALCKGCRCLELDCWDGPNQEPIIYHGYTFT   67 (258)
T ss_pred             cCCccCHHHHHHHHHhCCcEEEEEeecCCCCCcEEeeCCCCc
Confidence            445668999999999999999999999999999999998763

This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta1 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This subfamily corresponds to the catalytic domain

>cd08598 PI-PLC1c_yeast Catalytic domain of putative yeast phosphatidylinositide-specific phospholipases C

Probab=96.47  E-value=0.0042  Score=55.12  Aligned_cols=42  Identities=24%  Similarity=0.454  Sum_probs=37.2

Q ss_pred             CCchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCCc
Q 020686           55 EFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLD   96 (322)
Q Consensus        55 ~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l~   96 (322)
                      ..-+-|..+|.+|+..|+..||+|++=-.||+|||.|-.++.
T Consensus        26 l~~~ss~~~y~~aL~~GcRcvElD~wdg~~~ep~V~HG~t~t   67 (231)
T cd08598          26 LAGDSSVEGYIRALQRGCRCVEIDVWDGDDGEPVVTHGYTLT   67 (231)
T ss_pred             cCCccCHHHHHHHHHhCCcEEEEEeecCCCCCcEEeeCCCCc
Confidence            345678999999999999999999999989999999987763

This family corresponds to the catalytic domain present in a group of putative phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) encoded by PLC1 genes from yeasts, which are homologs of the delta isoforms of mammalian PI-PLC in terms of overall sequence similarity and domain organization. Mammalian PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. The prototype of this CD is protein Plc1p encoded by PLC1 genes fro

>cd08623 PI-PLCc_beta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta1

Probab=96.33  E-value=0.0051  Score=55.42  Aligned_cols=52  Identities=13%  Similarity=0.220  Sum_probs=41.0

Q ss_pred             CCCCeEEeeCCCCCCCchhHHHHHHHHHHcCCCEEEeeeeEcC--CCeEEEEeCCCCc
Q 020686           41 TSRPYNLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASK--DGVLICHHDVFLD   96 (322)
Q Consensus        41 ~~~p~iiaHRG~~~~~pENT~~Af~~A~~~G~d~iE~DV~lTk--Dg~~Vv~HD~~l~   96 (322)
                      .++.+..||.    ..-+-|.++|.+|+..|+..||+|++=-.  ||+|||.|..++-
T Consensus        16 SHNTYL~g~Q----l~g~ss~e~y~~aL~~GcRcvElD~wdG~~~~~ePiV~HG~tlt   69 (258)
T cd08623          16 SHNTYLTAGQ----LAGNSSVEMYRQVLLSGCRCVELDCWKGRTAEEEPVITHGFTMT   69 (258)
T ss_pred             CccccccCCc----cCCccCHHHHHHHHHcCCCEEEEEeeCCCCCCCCCEEeeCCCcc
Confidence            4444555443    33456789999999999999999999876  6899999998774

This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho

>cd08624 PI-PLCc_beta2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta2

Probab=96.30  E-value=0.0051  Score=55.49  Aligned_cols=42  Identities=19%  Similarity=0.198  Sum_probs=36.5

Q ss_pred             CCchhHHHHHHHHHHcCCCEEEeeeeEcC--CCeEEEEeCCCCc
Q 020686           55 EFPEETAAAYMRAIEEGADFIETDILASK--DGVLICHHDVFLD   96 (322)
Q Consensus        55 ~~pENT~~Af~~A~~~G~d~iE~DV~lTk--Dg~~Vv~HD~~l~   96 (322)
                      ..-+-|..+|.+|+..|+..||+|++=-.  ||+|||.|..++-
T Consensus        26 l~~~ss~e~y~~aL~~GcRcvElD~wdg~~~~~ePvV~HG~tlt   69 (261)
T cd08624          26 FSGLSSPEMYRQVLLSGCRCVELDCWKGKPPDEEPIITHGFTMT   69 (261)
T ss_pred             cCCccCHHHHHHHHHcCCcEEEEEecCCCCCCCCCEEeeCCCcc
Confidence            44566899999999999999999999764  7899999998873

This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 2. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho

>cd08591 PI-PLCc_beta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta

Probab=96.13  E-value=0.0074  Score=54.31  Aligned_cols=42  Identities=19%  Similarity=0.141  Sum_probs=37.2

Q ss_pred             CCchhHHHHHHHHHHcCCCEEEeeeeEcCC--CeEEEEeCCCCc
Q 020686           55 EFPEETAAAYMRAIEEGADFIETDILASKD--GVLICHHDVFLD   96 (322)
Q Consensus        55 ~~pENT~~Af~~A~~~G~d~iE~DV~lTkD--g~~Vv~HD~~l~   96 (322)
                      ..-+-|.++|.+|+..|++.||+|++=-.|  |+|||.|-.++-
T Consensus        26 l~g~ss~e~y~~aL~~GcRcvElD~Wdg~~~~~eP~V~HG~tlt   69 (257)
T cd08591          26 FGGKSSVEMYRQVLLSGCRCIELDCWDGKGEDEEPIITHGKTMC   69 (257)
T ss_pred             ccCcccHHHHHHHHHhCCcEEEEEeecCCCCCCCCEEeeCCCCc
Confidence            445678899999999999999999999885  999999998774

This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for homod

>cd08625 PI-PLCc_beta3 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta3

Probab=95.99  E-value=0.0089  Score=54.01  Aligned_cols=42  Identities=14%  Similarity=0.171  Sum_probs=36.3

Q ss_pred             CCchhHHHHHHHHHHcCCCEEEeeeeEcC--CCeEEEEeCCCCc
Q 020686           55 EFPEETAAAYMRAIEEGADFIETDILASK--DGVLICHHDVFLD   96 (322)
Q Consensus        55 ~~pENT~~Af~~A~~~G~d~iE~DV~lTk--Dg~~Vv~HD~~l~   96 (322)
                      ..-+-|.++|..|+..|+..||+|++=-.  |++|||.|..++-
T Consensus        26 l~~~ss~e~y~~aL~~GcRcvElD~wdg~~~~~eP~v~Hg~t~t   69 (258)
T cd08625          26 LTGLSSVEMYRQVLLTGCRCIELDCWKGRPPEEEPFITHGFTMT   69 (258)
T ss_pred             cCCccCHHHHHHHHHcCCCEEEEEecCCCCCCCCCEEeeCCccc
Confidence            44567799999999999999999999763  6899999998874

This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 3. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho

>PLN02230 phosphoinositide phospholipase C 4

Probab=95.70  E-value=0.041  Score=55.44  Aligned_cols=49  Identities=16%  Similarity=0.182  Sum_probs=41.1

Q ss_pred             EeeCCC---CCCCchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCC
Q 020686           47 LAHRGS---NGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFL   95 (322)
Q Consensus        47 iaHRG~---~~~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l   95 (322)
                      -+|.-.   .-..-+.|.++|.+|+..|+..||+|++--.+|.|||.|-.++
T Consensus       128 sSHNTYL~g~Ql~~~ss~e~y~~aL~~GcRcvElD~wdg~~~ep~v~HG~t~  179 (598)
T PLN02230        128 TGHNSYLTGNQLSSNCSELPIADALRRGVRVVELDLWPRGTDDVCVKHGRTL  179 (598)
T ss_pred             cccCccccCCcccCccCHHHHHHHHHcCCcEEEEeccCCCCCCcEEeeCCCC
Confidence            477743   2355667899999999999999999999888899999998776

>PLN02952 phosphoinositide phospholipase C

Probab=94.78  E-value=0.12  Score=52.11  Aligned_cols=49  Identities=18%  Similarity=0.281  Sum_probs=39.6

Q ss_pred             EeeCCC---CCCCchhHHHHHHHHHHcCCCEEEeeeeEcCCC-eEEEEeCCCC
Q 020686           47 LAHRGS---NGEFPEETAAAYMRAIEEGADFIETDILASKDG-VLICHHDVFL   95 (322)
Q Consensus        47 iaHRG~---~~~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg-~~Vv~HD~~l   95 (322)
                      -+|.-.   .-...+-|..+|.+|+..|+..||+|++--.|| .|||+|-.++
T Consensus       136 SSHNTYL~g~Ql~~~ss~~~y~~aL~~GcRcvElD~wdg~~~~~p~v~Hg~t~  188 (599)
T PLN02952        136 TGHNSYLTGNQLSSDCSEVPIVKALQRGVRVIELDLWPGSTKDEILVLHGRTL  188 (599)
T ss_pred             ccccccccCCccCCcCCHHHHHHHHHcCCcEEEEEeecCCCCCCCEEEeCCcc
Confidence            477743   235567889999999999999999999977765 4899998766

>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]

Probab=94.64  E-value=0.028  Score=57.47  Aligned_cols=79  Identities=18%  Similarity=0.144  Sum_probs=56.5

Q ss_pred             HHHHHHHhhcCCCCCCCCCCCcccCcCCCC-CCCCeE-----EeeCCC---CCCCchhHHHHHHHHHHcCCCEEEeeeeE
Q 020686           11 LLFLSLIAGCAARPLYPLPSKLDIHKQPLQ-TSRPYN-----LAHRGS---NGEFPEETAAAYMRAIEEGADFIETDILA   81 (322)
Q Consensus        11 ~~~~~l~~~c~~~~~~~~~~~~~~~~~~~~-~~~p~i-----iaHRG~---~~~~pENT~~Af~~A~~~G~d~iE~DV~l   81 (322)
                      =++.+|+|-=.+-....      ....... +++|+.     -.|.-.   .-..-|.|++||.+|+++|+..||+|.+=
T Consensus       286 EFv~fLFSreNslWd~k------~d~V~~d~Mn~PLShYWIsSSHNTYLTGDQlrSESSleaYar~LrMGCRCIELDCWd  359 (1267)
T KOG1264|consen  286 EFVTFLFSRENSLWDSK------YDAVDMDDMNNPLSHYWISSSHNTYLTGDQLRSESSLEAYARCLRMGCRCIELDCWD  359 (1267)
T ss_pred             HHHHHHhhccccccccc------ccccchhhhcCcchhheeeccCcceecccccccccCHHHHHHHHHhCCeEEEeeccc
Confidence            35566666544433221      1122333 666643     356543   23678999999999999999999999999


Q ss_pred             cCCCeEEEEeCCCC
Q 020686           82 SKDGVLICHHDVFL   95 (322)
Q Consensus        82 TkDg~~Vv~HD~~l   95 (322)
                      -.||.||++|-.|+
T Consensus       360 Gpd~~pvIyHG~T~  373 (1267)
T KOG1264|consen  360 GPDGKPVIYHGHTR  373 (1267)
T ss_pred             CCCCCceEEeccce
Confidence            99999999999876

>PLN02222 phosphoinositide phospholipase C 2

Probab=94.00  E-value=0.21  Score=50.38  Aligned_cols=49  Identities=22%  Similarity=0.285  Sum_probs=38.1

Q ss_pred             EeeCCC---CCCCchhHHHHHHHHHHcCCCEEEeeeeEcCCCe-EEEEeCCCC
Q 020686           47 LAHRGS---NGEFPEETAAAYMRAIEEGADFIETDILASKDGV-LICHHDVFL   95 (322)
Q Consensus        47 iaHRG~---~~~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~-~Vv~HD~~l   95 (322)
                      -+|.-.   .-..-+-|..+|.+|+..|+..||+|++=-.||. |+|.|-.++
T Consensus       116 SSHNTYL~g~Ql~~~ss~~~y~~aL~~GcRcvElD~wdg~~~~~~~v~HG~tl  168 (581)
T PLN02222        116 TGHNSYLTGNQLSSDCSEVPIIDALKKGVRVIELDIWPNSDKDDIDVLHGMTL  168 (581)
T ss_pred             cccCccccCCcccCccCHHHHHHHHHcCCcEEEEEeccCCCCCCCeEeeCCcc
Confidence            467743   2345677889999999999999999999766665 578897665

>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]

Probab=93.63  E-value=0.062  Score=54.72  Aligned_cols=59  Identities=19%  Similarity=0.293  Sum_probs=47.2

Q ss_pred             CCCCCCCeE-----EeeCCC---CCCCchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCCc
Q 020686           38 PLQTSRPYN-----LAHRGS---NGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLD   96 (322)
Q Consensus        38 ~~~~~~p~i-----iaHRG~---~~~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l~   96 (322)
                      ...++.|+.     -+|.-.   .-..-+.|+.+|..|++.|+..||+|++--.+|.|||.|-.|+-
T Consensus       288 ~qDM~qPLsHYFI~SSHNTYLtg~Ql~g~sSvegyI~ALk~GcR~vElD~Wdg~~~epvV~HG~TlT  354 (746)
T KOG0169|consen  288 HQDMDQPLSHYFISSSHNTYLTGDQLGGPSSVEGYIRALKKGCRCVELDCWDGPNGEPVVYHGHTLT  354 (746)
T ss_pred             hhcccCcchhheEeccccceecccccCCccccHHHHHHHHhCCeEEEEecccCCCCCeeEecCcccc
Confidence            344566643     366654   22556889999999999999999999999999999999999874

>PLN02228 Phosphoinositide phospholipase C

Probab=93.16  E-value=0.11  Score=52.22  Aligned_cols=50  Identities=20%  Similarity=0.284  Sum_probs=40.2

Q ss_pred             EeeCCC---CCCCchhHHHHHHHHHHcCCCEEEeeeeEcCCCe-EEEEeCCCCc
Q 020686           47 LAHRGS---NGEFPEETAAAYMRAIEEGADFIETDILASKDGV-LICHHDVFLD   96 (322)
Q Consensus        47 iaHRG~---~~~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~-~Vv~HD~~l~   96 (322)
                      -.|.-.   .-..-+-|..+|.+|+..|+..||+|++=-.||. |||.|-.++-
T Consensus       119 SSHNTYL~g~Ql~~~ss~e~y~~aL~~GcRcvElD~wdg~~~~~p~v~Hg~t~t  172 (567)
T PLN02228        119 TGHNSYLTGNQVNSRSSVEPIVQALRKGVKVIELDLWPNPSGNAAEVRHGRTLT  172 (567)
T ss_pred             cccCccccCCcccCccCHHHHHHHHHcCCcEEEEEeccCCCCCCCEEEeCCccc
Confidence            367644   2355677899999999999999999999766665 8999998774

>PLN02223 phosphoinositide phospholipase C

Probab=90.98  E-value=0.28  Score=48.81  Aligned_cols=50  Identities=16%  Similarity=0.284  Sum_probs=38.2

Q ss_pred             EeeCCC-CC--CCch-hHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCCc
Q 020686           47 LAHRGS-NG--EFPE-ETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLD   96 (322)
Q Consensus        47 iaHRG~-~~--~~pE-NT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l~   96 (322)
                      -+|.-. .|  ..-+ .|..+|.+|+..|+..||+|++-..++.++|.|-.++-
T Consensus       119 SSHNTYL~g~Ql~~~~ss~e~y~~aL~~GcRcvElD~W~~~~~~~~v~hG~tlt  172 (537)
T PLN02223        119 TSLKSYFTGNNVFGKLYSIEPIIDALEQGVRVVELDLLPDGKDGICVRPKWNFE  172 (537)
T ss_pred             ccccccccCCcccCCcccHHHHHHHHHcCCcEEEEEecCCCCCCCeEeeCCcee
Confidence            366644 11  2333 88999999999999999999996566667899988763

>cd00137 PI-PLCc Catalytic domain of prokaryotic and eukaryotic phosphoinositide-specific phospholipase C

Probab=90.19  E-value=0.47  Score=43.53  Aligned_cols=40  Identities=13%  Similarity=0.153  Sum_probs=36.2

Q ss_pred             CchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCC
Q 020686           56 FPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFL   95 (322)
Q Consensus        56 ~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l   95 (322)
                      +-.+...+|..+++.|++++|+||+-.+|+.|+|+|-.++
T Consensus        32 ~~~tq~~~~~~qL~~G~R~lDir~~~~~~~~~~v~HG~~~   71 (274)
T cd00137          32 WGLTQTEMYRQQLLSGCRCVDIRCWDGKPEEPIIYHGPTF   71 (274)
T ss_pred             cCcCcHHHHHHHHHcCCcEEEEEeecCCCCCeEEEECCcc
Confidence            3578899999999999999999999999999999998654

This subfamily corresponds to the catalytic domain present in prokaryotic and eukaryotic phosphoinositide-specific phospholipase C (PI-PLC), which is a ubiquitous enzyme catalyzing the cleavage of the sn3-phosphodiester bond in the membrane phosphoinositides (phosphatidylinositol, PI; Phosphatidylinositol-4-phosphate, PIP; phosphatidylinositol 4,5-bisphosphate, PIP2) to yield inositol phosphates (inositol monosphosphate, InsP; inositol diphosphate, InsP2; inositol trisphosphate, InsP3) and diacylglycerol (DAG). The higher eukaryotic PI-PLCs (EC 3.1.4.11) have a multidomain organization that consists of a PLC catalytic core domain, and various regulatory domains. They play a critical role in most signal transduction pathways, controlling numerous cellular events, such as cell growth, proliferation, excitation and secretion. These PI-PLCs strictly require Ca2+ for their catalytic a

>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II)

Probab=89.05  E-value=0.23  Score=28.04  Aligned_cols=21  Identities=33%  Similarity=0.736  Sum_probs=17.0

Q ss_pred             CccchhHHHHHHHHHHhhcCC
Q 020686            2 GISSTCFIPLLFLSLIAGCAA   22 (322)
Q Consensus         2 ~~~~~~~~~~~~~~l~~~c~~   22 (322)
                      .|..-+++++++++.++||++
T Consensus         5 ~mmKkil~~l~a~~~LagCss   25 (25)
T PF08139_consen    5 SMMKKILFPLLALFMLAGCSS   25 (25)
T ss_pred             HHHHHHHHHHHHHHHHhhccC
Confidence            355667888999999999985

The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].

>PF00388 PI-PLC-X: Phosphatidylinositol-specific phospholipase C, X domain This entry is for the whole phospholipase C protein; InterPro: IPR000909 Phosphatidylinositol-specific phospholipase C (3

Probab=87.26  E-value=1.1  Score=36.81  Aligned_cols=40  Identities=15%  Similarity=0.377  Sum_probs=31.7

Q ss_pred             CchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCC
Q 020686           56 FPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFL   95 (322)
Q Consensus        56 ~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l   95 (322)
                      +..+...++...++.|+.++|+||+...++.++++|....
T Consensus        24 ~~~~Q~~~i~~QL~~GiR~lDlrv~~~~~~~~~v~Hg~~~   63 (146)
T PF00388_consen   24 WSKTQSWSIREQLESGIRYLDLRVWDGNDGELVVYHGITS   63 (146)
T ss_dssp             HC-B-SHHHHHHHHTT--EEEEEEEEETTSSEEEEETTSE
T ss_pred             ccCcchHhHHHHHhccCceEEEEEEcCCCCceEEEeCCEe
Confidence            3567788999999999999999999999999999996544

1.4.11 from EC), a eukaryotic intracellular enzyme, plays an important role in signal transduction processes []. It catalyzes the hydrolysis of 1-phosphatidyl-D-myo-inositol-3,4,5-triphosphate into the second messenger molecules diacylglycerol and inositol-1,4,5-triphosphate. This catalytic process is tightly regulated by reversible phosphorylation and binding of regulatory proteins [, , ]. In mammals, there are at least 6 different isoforms of PI-PLC, they differ in their domain structure, their regulation, and their tissue distribution. Lower eukaryotes also possess multiple isoforms of PI-PLC. All eukaryotic PI-PLCs contain two regions of homology, sometimes referred to as the 'X-box' and 'Y-box'. The order of these two regions is always the same (NH2-X-Y-COOH), but the spacing is variable. In most isoforms, the distance between these two regions is only 50-100 residues but in the gamma isoforms one PH domain, two SH2 domains, and one SH3 domain are inserted between the two PLC-specific domains. The two conserved regions have been shown to be important for the catalytic activity. By profile analysis, we could show that sequences with significant similarity to the X-box domain occur also in prokaryotic and trypanosome PI-specific phospholipases C. Apart from this region, the prokaryotic enzymes show no similarity to their eukaryotic counterparts.; GO: 0004629 phospholipase C activity, 0006629 lipid metabolic process, 0035556 intracellular signal transduction; PDB: 2FJU_B 2ZKM_X 3V18_A 3V1H_A 3V16_A 3QR1_D 3EA3_A 3EA1_A 2OR2_A 1T6M_B ....

>cd08589 PI-PLCc_SaPLC1_like Catalytic domain of Streptomyces antibioticus phosphatidylinositol-specific phospholipase C1-like proteins

Probab=82.03  E-value=3.4  Score=38.73  Aligned_cols=41  Identities=17%  Similarity=0.132  Sum_probs=32.6

Q ss_pred             CchhHHHHHHHHHHcCCCEEEeeeeEcCC--------------------CeEEEEeCCCCc
Q 020686           56 FPEETAAAYMRAIEEGADFIETDILASKD--------------------GVLICHHDVFLD   96 (322)
Q Consensus        56 ~pENT~~Af~~A~~~G~d~iE~DV~lTkD--------------------g~~Vv~HD~~l~   96 (322)
                      ..+|+-..+..+++.|+..+|+||+-..+                    +.+-|+|-.+++
T Consensus        42 ~~~~s~~~i~~QLd~GvR~LELDv~~d~~gg~~a~P~~~~~~~~~~~~~~g~~V~H~~~~d  102 (324)
T cd08589          42 GLDYSHPPLADQLDSGVRQLELDVWADPEGGRYAHPLGLAPDDAAVMKKPGWKVSHIPDLD  102 (324)
T ss_pred             cccCCCccHHHHHhhCcceEEEEEeecCCcccccccccccccccccccCCCeEEEcCCCcC
Confidence            34577889999999999999999998654                    456777776663

This subfamily corresponds to the catalytic domain present in Streptomyces antibioticus phosphatidylinositol-specific phospholipase C1 (SaPLC1) and similar proteins. The typical bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13) catalyzes Ca2+-independent hydrolysis of the membrane lipid phosphatidylinositol (PI) to produce phosphorylated myo-inositol and diacylglycerol (DAG). The catalytic mechanism is based on general base and acid catalysis utilizing two well conserved histidines, and consists of two steps, a phosphotransfer and a phosphodiesterase reaction. In contrast, SaPLC1 is the first known natural Ca2+-dependent bacterial PI-PLC. It is more closely related to the eukaryotic PI-PLCs rather than the typical bacterial PI-PLCs. It participates in PI metabolism to generate myo-inositol-1-phosphate and myo-inositol-1:2-cy

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	322
1ydy_A	356	Crystal Structure Of Periplasmic Glycerophosphodies		2e-25
1t8q_A	336	Structural Genomics, Crystal Structure Of Glyceroph		6e-25
2pz0_A	252	Crystal Structure Of Glycerophosphodiester Phosphod		2e-11
2oog_A	287	Crystal Structure Of Glycerophosphoryl Diester Phos		3e-09
1zcc_A	248	Crystal Structure Of Glycerophosphodiester Phosphod		1e-07
3qvq_A	252	The Structure Of An Oleispira Antarctica Phosphodie		7e-07
1o1z_A	234	Crystal Structure Of Glycerophosphodiester Phosphod		1e-06
3i10_A	278	Crystal Structure Of Putative Glycerophosphoryl Die		1e-05
3ch0_A	272	Crystal Structure Of Glycerophosphoryl Diester Phos		1e-04
1v8e_A	224	Crystal Structure Of Glycerophosphoryl Diester Phos		2e-04

>pdb|1YDY|A Chain A, Crystal Structure Of Periplasmic Glycerophosphodiester Phosphodiesterase From Escherichia Coli Length = 356

Iteration: 1
 Score =  112 bits (281), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 81/267 (30%), Positives = 130/267 (48%), Gaps = 50/267 (18%)
Query: 47  LAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKE 106
           +AHRG++G  PE T  A   A  +GAD++E D++ +KD  L+  HD +LD  T++AD   
Sbjct: 34  IAHRGASGYLPEHTLPAKAMAYAQGADYLEQDLVMTKDDNLVVLHDHYLDRVTDVAD--R 91
Query: 107 FADRKRTCMVQGVNTTGFFVVDFTLEELKTLRAKQRYSFRD----QQYNGKFP------- 155
           F DR R           ++ +DFTL+E+K+L+  + +   +    Q Y G+FP       
Sbjct: 92  FPDRAR-------KDGRYYAIDFTLDEIKSLKFTEGFDIENGKKVQTYPGRFPMGKSDFR 144
Query: 156 IITFEEYI----SIALDAQRVVGIYPEMKNPVFINQHVKWADGKKFEDKFVDTLKKYGYK 211
           + TFEE I     +     + +GIYPE+K P F +Q     +GK    K ++ LKKYGY 
Sbjct: 145 VHTFEEEIEFVQGLNHSTGKNIGIYPEIKAPWFHHQ-----EGKDIAAKTLEVLKKYGYT 199
Query: 212 GAYMSKEWLKQPIFIQSFAPTSLVYISNKTDSPKIFLIDDVDILT-EDTNQSYSEITSDA 270
           G           +++Q F    L  I N+ +      ++ V ++   D N++  +    +
Sbjct: 200 GK-------DDKVYLQCFDADELKRIKNELEPKMGMELNLVQLIAYTDWNETQQKQPDGS 252
Query: 271 YLNY-------------IKEYCVGIGP 284
           ++NY             + EY  GIGP
Sbjct: 253 WVNYNYDWMFKPGAMKQVAEYADGIGP 279

>pdb|1T8Q|A Chain A, Structural Genomics, Crystal Structure Of Glycerophosphoryl Diester Phosphodiesterase From E. Coli Length = 336

Iteration: 1
 Score =  111 bits (277), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 81/267 (30%), Positives = 130/267 (48%), Gaps = 50/267 (18%)
Query: 47  LAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKE 106
           +AHRG++G  PE T  A   A  +GAD++E D++ +KD  L+  HD +LD  T++AD   
Sbjct: 12  IAHRGASGYLPEHTLPAKAXAYAQGADYLEQDLVXTKDDNLVVLHDHYLDRVTDVAD--R 69
Query: 107 FADRKRTCMVQGVNTTGFFVVDFTLEELKTLRAKQRYSFRD----QQYNGKFP------- 155
           F DR R           ++ +DFTL+E+K+L+  + +   +    Q Y G+FP       
Sbjct: 70  FPDRAR-------KDGRYYAIDFTLDEIKSLKFTEGFDIENGKKVQTYPGRFPXGKSDFR 122
Query: 156 IITFEEYI----SIALDAQRVVGIYPEMKNPVFINQHVKWADGKKFEDKFVDTLKKYGYK 211
           + TFEE I     +     + +GIYPE+K P F +Q     +GK    K ++ LKKYGY 
Sbjct: 123 VHTFEEEIEFVQGLNHSTGKNIGIYPEIKAPWFHHQ-----EGKDIAAKTLEVLKKYGYT 177
Query: 212 GAYMSKEWLKQPIFIQSFAPTSLVYISNKTDSPKIFLIDDVDILT-EDTNQSYSEITSDA 270
           G           +++Q F    L  I N+ +      ++ V ++   D N++  +    +
Sbjct: 178 GK-------DDKVYLQCFDADELKRIKNELEPKXGXELNLVQLIAYTDWNETQQKQPDGS 230
Query: 271 YLNY-------------IKEYCVGIGP 284
           ++NY             + EY  GIGP
Sbjct: 231 WVNYNYDWXFKPGAXKQVAEYADGIGP 257

>pdb|2PZ0|A Chain A, Crystal Structure Of Glycerophosphodiester Phosphodiesterase (Gdpd) From T. Tengcongensis Length = 252

Iteration: 1
 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 60/203 (29%), Positives = 92/203 (45%), Gaps = 45/203 (22%)
Query: 47  LAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKE 106
           +AHRG +   PE T AA+ RA+E GAD IE D+  +KDG L+  HD  +D TTN      
Sbjct: 15  IAHRGDSKNVPENTIAAFKRAMELGADGIELDVQLTKDGHLVVIHDETVDRTTNGEG--- 71
Query: 107 FADRKRTCMVQGVNTTGFFVVDFTLEELKTLRAKQRYSFRDQQYNGKFPIITFEEYISIA 166
                             FV DFTLEE+K L A  ++    +++ G+  I T  E   + 
Sbjct: 72  ------------------FVKDFTLEEIKKLDAGIKFG---EKFAGE-RIPTLYEVFELI 109
Query: 167 LDAQRVVGIYPEMKNPVFINQHVKWADGKKFEDKFVDTLKKYGYKGAYMSKEWLKQPIFI 226
            D   +V I  E+K+ + +   +        E+K +  +K+Y +          ++ + I
Sbjct: 110 GDKDFLVNI--EIKSGIVLYPGI--------EEKLIKAIKEYNF----------EERVII 149
Query: 227 QSFAPTSLVYISNKTDSPKIFLI 249
            SF   SL  +       KI L+
Sbjct: 150 SSFNHYSLRDVKKMAPHLKIGLL 172

>pdb|2OOG|A Chain A, Crystal Structure Of Glycerophosphoryl Diester Phosphodiesterase From Staphylococcus Aureus Length = 287

Iteration: 1
 Score = 59.3 bits (142), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 71/257 (27%), Positives = 110/257 (42%), Gaps = 62/257 (24%)
Query: 39  LQTSRPYNLAHRGSNGEFPEETAAAYMRAIEE-GADFIETDILASKDGVLICHHDVFLDD 97
           L   R   +AHRG++G  PE T  AY ++  E  A +IE D+  +KDG L+  HD  ++ 
Sbjct: 19  LTNERFTTIAHRGASGYAPEHTFQAYDKSHNELKASYIEIDLQRTKDGHLVAMHDETVNR 78
Query: 98  TTNIADHKEFADRKRTCMVQGVNTTGFFVVDFTLEELKTLRAKQRYSFRDQQY------N 151
           TTN   H +                   V D+TL+ELK L A   ++ +  +Y      N
Sbjct: 79  TTN--GHGK-------------------VEDYTLDELKQLDAGSWFNKKYPKYARASYKN 117
Query: 152 GKFPII--TFEEYISIALDAQRVVGIYPEMKNPVFINQHVKWADGKKFEDKFVDTLKKYG 209
            K P +    E Y   A         Y E K+P               E++ + +LKK+ 
Sbjct: 118 AKVPTLDEILERYGPNA-------NYYIETKSPDVY---------PGMEEQLLASLKKH- 160
Query: 210 YKGAYMSKEWLKQ-PIFIQSFAPTSLVYISNKTDS-PKIFLIDDVDILTEDTNQSYSEIT 267
                ++   LK   + IQSF+  SL  I  +    P + L+D  ++      Q +    
Sbjct: 161 ---HLLNNNKLKNGHVMIQSFSDESLKKIHRQNKHVPLVKLVDKGEL------QQF---- 207
Query: 268 SDAYLNYIKEYCVGIGP 284
           +D  L  I+ Y +G+GP
Sbjct: 208 NDQRLKEIRSYAIGLGP 224

>pdb|1ZCC|A Chain A, Crystal Structure Of Glycerophosphodiester Phosphodiesterase From Agrobacterium Tumefaciens Str.C58 Length = 248

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/54 (51%), Positives = 36/54 (66%)
Query: 47  LAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTN 100
           ++HRG+N   PE T AA   A+++GAD+IE D+  S DGVL   HD  LD TTN
Sbjct: 5   VSHRGANRFAPENTFAAADLALQQGADYIELDVRESADGVLYVIHDETLDRTTN 58

>pdb|3QVQ|A Chain A, The Structure Of An Oleispira Antarctica Phosphodiesterase Olei02445 In Complex With The Product Sn-Glycerol-3-Phosphate Length = 252

Iteration: 1
 Score = 51.2 bits (121), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 36/57 (63%)
Query: 44  PYNLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTN 100
           P  +AHRGS+G+ PE T A+   A ++G  ++E D+  S DG+ +  HD +L  TT+
Sbjct: 10  PQVIAHRGSSGQAPENTLASLHLAGQQGIKWVEIDVXLSGDGIPVIFHDDYLSRTTD 66

>pdb|1O1Z|A Chain A, Crystal Structure Of Glycerophosphodiester Phosphodiesterase (Gdpd) (Tm1621) From Thermotoga Maritima At 1.60 A Resolution Length = 234

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 44/79 (55%), Gaps = 11/79 (13%)
Query: 47  LAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHH----------DVFLD 96
           L HRG + ++ E T  A+M+AIE GA+ +E D+  SKDG ++  H          DV + 
Sbjct: 16  LGHRGYSAKYLENTLEAFMKAIEAGANGVELDVRLSKDGKVVVSHDEDLKRLFGLDVKIR 75
Query: 97  DTTNIADHKEFADRKRTCM 115
           D T +++ KE  D K T +
Sbjct: 76  DAT-VSELKELTDGKITTL 93

>pdb|3I10|A Chain A, Crystal Structure Of Putative Glycerophosphoryl Diester Phosphodiesterase (Np_812074.1) From Bacteroides Thetaiotaomicron Vpi-5482 At 1.35 A Resolution Length = 278

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/53 (47%), Positives = 30/53 (56%)
Query: 47 LAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTT 99
          +AHRG+    PE + AA   AI    D +E DI  +KDG LI  HD  LD TT
Sbjct: 21 VAHRGNWRSAPENSTAAIDSAIAXKVDIVEIDIQKTKDGQLILXHDNTLDRTT 73

>pdb|3CH0|A Chain A, Crystal Structure Of Glycerophosphoryl Diester Phosphodiesterase (Yp_677622.1) From Cytophaga Hutchinsonii Atcc 33406 At 1.50 A Resolution Length = 272

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 27/48 (56%)
Query: 48 AHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFL 95
           HRG  G  PE T AA+ +A+  G   +E D++ SKD  ++  HD F 
Sbjct: 13 GHRGCRGLLPENTIAAFTKALLLGVTTLEFDLVISKDNRVVVSHDTFF 60

>pdb|1V8E|A Chain A, Crystal Structure Of Glycerophosphoryl Diester Phosphodiesterase From Thermus Thermophilus Hb8 Length = 224

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 28/51 (54%)
Query: 42 SRPYNLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHD 92
           RP  L HRG+  +  E T  ++  A+E G D +E D+  ++DGV    HD
Sbjct: 6  QRPLRLGHRGAPLKAKENTLESFRLALEAGLDGVELDVWPTRDGVFAVRHD 56

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	322
1ydy_A	356	Glycerophosphoryl diester phosphodiesterase; struc	2e-76
2oog_A	287	Glycerophosphoryl diester phosphodiesterase; phosp	4e-50
3l12_A	313	Putative glycerophosphoryl diester phosphodiester;	3e-42
3ch0_A	272	Glycerophosphodiester phosphodiesterase; YP_677622	1e-36
2pz0_A	252	Glycerophosphoryl diester phosphodiesterase; glyce	8e-35
3qvq_A	252	Phosphodiesterase OLEI02445; structural genomics,	5e-33
3ks6_A	250	Glycerophosphoryl diester phosphodiesterase; struc	2e-32
2o55_A	258	Putative glycerophosphodiester phosphodiesterase;	2e-32
2otd_A	247	Glycerophosphodiester phosphodiesterase; structura	2e-31
3i10_A	278	Putative glycerophosphoryl diester phosphodiester;	1e-30
3no3_A	238	Glycerophosphodiester phosphodiesterase; structura	1e-29
1zcc_A	248	Glycerophosphodiester phosphodiesterase; NYSGXRC,	4e-29
1o1z_A	234	GDPD, glycerophosphodiester phosphodiesterase; TM1	3e-27
3mz2_A	292	Glycerophosphoryl diester phosphodiesterase; struc	4e-27
1vd6_A	224	Glycerophosphoryl diester phosphodiesterase; glyce	3e-23
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04
3rlg_A	302	Sphingomyelin phosphodiesterase D lisictox-alphai;	1e-05

>1ydy_A Glycerophosphoryl diester phosphodiesterase; structural genomics, PSI, protein structu initiative; 1.70A {Escherichia coli} SCOP: c.1.18.3 PDB: 1t8q_A Length = 356

 Score =  237 bits (605), Expect = 2e-76
 Identities = 86/338 (25%), Positives = 142/338 (42%), Gaps = 65/338 (19%)

Query: 8   FIPLLFLSLIAGCAARPLYPLPSKLDIHKQPLQTSRPYNLAHRGSNGEFPEETAAAYMRA 67
            + ++  +++ G +A                  ++    +AHRG++G  PE T  A   A
Sbjct: 9   SMAIMMSTIVMGSSA--------------MAADSNEKIVIAHRGASGYLPEHTLPAKAMA 54

Query: 68  IEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVNTTGFFVV 127
             +GAD++E D++ +KD  L+  HD +LD  T++AD      RK            ++ +
Sbjct: 55  YAQGADYLEQDLVMTKDDNLVVLHDHYLDRVTDVADRFPDRARK---------DGRYYAI 105

Query: 128 DFTLEELKTLRAKQRYSFRD----QQYNGKFP-------IITFEEYISIALDA----QRV 172
           DFTL+E+K+L+  + +   +    Q Y G+FP       + TFEE I           + 
Sbjct: 106 DFTLDEIKSLKFTEGFDIENGKKVQTYPGRFPMGKSDFRVHTFEEEIEFVQGLNHSTGKN 165

Query: 173 VGIYPEMKNPVFINQHVKWADGKKFEDKFVDTLKKYGYKGAYMSKEWLKQPIFIQSFAPT 232
           +GIYPE+K P F +Q      GK    K ++ LKKYGY G           +++Q F   
Sbjct: 166 IGIYPEIKAPWFHHQE-----GKDIAAKTLEVLKKYGYTGK-------DDKVYLQCFDAD 213

Query: 233 SLVYISNK------TDSPKIFLIDDVDILTED--------TNQSYSEITSDAYLNYIKEY 278
            L  I N+       +   + LI   D              N +Y  +     +  + EY
Sbjct: 214 ELKRIKNELEPKMGMELNLVQLIAYTDWNETQQKQPDGSWVNYNYDWMFKPGAMKQVAEY 273

Query: 279 CVGIGPWKDTVVP-VANNYSQTPTDLVARAHALDLQIH 315
             GIGP    ++   +   +   T +V  A    L +H
Sbjct: 274 ADGIGPDYHMLIEETSQPGNIKLTGMVQDAQQNKLVVH 311

>2oog_A Glycerophosphoryl diester phosphodiesterase; phosphatase, ST genomics, protein structure initiative, PSI; 2.20A {Staphylococcus aureus subsp} PDB: 2p76_A Length = 287

 Score =  167 bits (424), Expect = 4e-50
 Identities = 67/287 (23%), Positives = 106/287 (36%), Gaps = 62/287 (21%)

Query: 35  HKQPLQTSRPYNLAHRGSNGEFPEETAAAYMRAIEE-GADFIETDILASKDGVLICHHDV 93
               L   R   +AHRG++G  PE T  AY ++  E  A +IE D+  +KDG L+  HD 
Sbjct: 15  WHTNLTNERFTTIAHRGASGYAPEHTFQAYDKSHNELKASYIEIDLQRTKDGHLVAMHDE 74

Query: 94  FLDDTTNIADHKEFADRKRTCMVQGVNTTGFFVVDFTLEELKTLRAKQRYSFRDQQYNGK 153
            ++ TTN                 G       V D+TL+ELK L A   ++ +  +Y   
Sbjct: 75  TVNRTTN---------------GHG------KVEDYTLDELKQLDAGSWFNKKYPKYARA 113

Query: 154 ----FPIITFEEYISIALDAQRVVGIYPEMKNPVFINQHVKWADGKKFEDKFVDTLKKYG 209
                 + T +E +            Y E K+P               E++ + +LKK+ 
Sbjct: 114 SYKNAKVPTLDEILER---YGPNANYYIETKSPDV---------YPGMEEQLLASLKKHH 161

Query: 210 YKGAYMSKEWLKQPIFIQSFAPTSLVYISNKT-DSPKIFLIDDVDILTEDTNQSYSEITS 268
                  K      + IQSF+  SL  I  +    P + L+D  ++   +          
Sbjct: 162 LLNNNKLKN---GHVMIQSFSDESLKKIHRQNKHVPLVKLVDKGELQQFN---------- 208

Query: 269 DAYLNYIKEYCVGIGPWKDTVVPVANNYSQTPTDLVARAHALDLQIH 315
           D  L  I+ Y +G+GP    +                    L   +H
Sbjct: 209 DQRLKEIRSYAIGLGPDYTDLTE----------QNTHHLKDLGFIVH 245

>3l12_A Putative glycerophosphoryl diester phosphodiester; struct genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.60A {Silicibacter pomeroyi} Length = 313

 Score =  147 bits (373), Expect = 3e-42
 Identities = 40/284 (14%), Positives = 84/284 (29%), Gaps = 33/284 (11%)

Query: 40  QTSRPYNLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTT 99
             S    + HRG+ G  PE T   +   +  G   +E D++ + DGV +  H+  L +  
Sbjct: 14  HPSVVRVIGHRGARGVMPENTLEGFAFTLAAGVRALEFDVVMTADGVPVVTHNHHLANAM 73

Query: 100 NIADHKEFADRKRTCMVQGVNTTGFFVVDFTLEELKTLRA-------KQRYSFRDQQYNG 152
                  +                  V + T  E++ L              F DQ +  
Sbjct: 74  TRDGQGHWLTGAE-----------RQVAEMTYAEIRALDVGGLDGRTVYGRRFPDQAFLT 122

Query: 153 KFPIITFEEYISIALD-AQRVVGIYPEMKNPVFINQHVKWADGKKFEDKFVDTLKKYGYK 211
              +    E + +      +   +  E+K+   +      A   +     +  +++Y  +
Sbjct: 123 GIHVPRLGELLDLCAGYGDQAPYLLLELKSDPALMH--DHAARAEMVAAVLADVRRYRME 180

Query: 212 GAYMSKEWLKQPIFIQSFAPTSLVYISNKTDSPKIFLIDDVDILTEDTNQSYSEITSDAY 271
                         + SF    L     +        +  +    +D  +  ++     Y
Sbjct: 181 P----------RTVMHSFDWALLGECRRQAPDLPTSYLSQLPENADDPGEDSAKPVGPDY 230

Query: 272 LNYIKEYCVGIGPWKDTVVPVANNYSQTPTDLVARAHALDLQIH 315
               +     +      +      +     +LVA AH L L + 
Sbjct: 231 DRMTESLPQAVASAGGQLWCP--YFLDVTPELVAEAHDLGLIVL 272

>3ch0_A Glycerophosphodiester phosphodiesterase; YP_677622.1, glycerophosphoryl diester phosphodiesterase, ST genomics; HET: MSE CIT GOL; 1.50A {Cytophaga hutchinsonii atcc 33406} Length = 272

 Score =  131 bits (332), Expect = 1e-36
 Identities = 48/280 (17%), Positives = 88/280 (31%), Gaps = 48/280 (17%)

Query: 40  QTSRPYNLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTT 99
             +      HRG  G  PE T AA+ +A+  G   +E D++ SKD  ++  HD F     
Sbjct: 5   VPASFDIQGHRGCRGLLPENTIAAFTKALLLGVTTLEFDLVISKDNRVVVSHDTFFHHEI 64

Query: 100 NIADHKEFADRKRTCMVQGVNTTGFFVVDFTLEELKTLRAKQRYSFRDQQYNGKFPIITF 159
            +    E             N   F +      ++K +    +      ++  +  +   
Sbjct: 65  TMMVDGEDVTEA--------NEKNFNLYAMNYADIKEIDVGMKTH---PRFKSQKKVPAV 113

Query: 160 EEYISIALDAQRV----VGIYPEMKNPVFINQHVKWADGKKFEDKFVDTLKKYGYKGAYM 215
           +      ++        +    E+K+ V  + ++   +   F D  V  +KK        
Sbjct: 114 KPLFRELIETAEKLSAKIQYNGEIKSTVEGD-NIDHPNIALFCDLVVAEIKKAH------ 166

Query: 216 SKEWLKQPIFIQSFAPTSLVYISNKTDSPKIFLIDDVDILTEDTNQSYSEITSDAYLNYI 275
               +     +QSF   +L Y+   +  P I L      L E         T    L  +
Sbjct: 167 ----ITDRFTLQSFDVRALEYM--HSQYPDIKLS----YLVETKG------TLKKQLEKL 210

Query: 276 KEYCVGIGPWKDTVVPVANNYSQTPTDLVARAHALDLQIH 315
                   P    V              +  AH L +++ 
Sbjct: 211 SFTPAVYSPDVTLVSK----------KDIDAAHKLGMRVI 240

>2pz0_A Glycerophosphoryl diester phosphodiesterase; glycerophosphodiester phosphodiesterase, T. tengcongensis; 1.91A {Thermoanaerobacter tengcongensis} Length = 252

 Score =  126 bits (318), Expect = 8e-35
 Identities = 67/284 (23%), Positives = 110/284 (38%), Gaps = 74/284 (26%)

Query: 35  HKQPLQTSRPYNLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVF 94
           H     + +   +AHRG +   PE T AA+ RA+E GAD IE D+  +KDG L+  HD  
Sbjct: 3   HHHHHHSMKTLVIAHRGDSKNVPENTIAAFKRAMELGADGIELDVQLTKDGHLVVIHDET 62

Query: 95  LDDTTNIADHKEFADRKRTCMVQGVNTTGFFVVDFTLEELKTLRAKQRYSFRDQQYNGKF 154
           +D TTN                +G      FV DFTLEE+K L A        +++ G+ 
Sbjct: 63  VDRTTN---------------GEG------FVKDFTLEEIKKLDAG---IKFGEKFAGE- 97

Query: 155 PIITFEEYISIALDAQRVVGIYPEMKNPVFINQHVKWADGKKFEDKFVDTLKKYGYKGAY 214
            I T  E   +  D   +V I  E+K+ +              E+K +  +K+Y      
Sbjct: 98  RIPTLYEVFELIGDKDFLVNI--EIKSGI--------VLYPGIEEKLIKAIKEYN----- 142

Query: 215 MSKEWLKQPIFIQSFAPTSLVYISNKTDSPKI---FLIDDVDILTEDTNQSYSEITSDAY 271
                 ++ + I SF   SL  +  K  +P +    L              Y     + +
Sbjct: 143 -----FEERVIISSFNHYSLRDV--KKMAPHLKIGLL--------------YQCGLVEPW 181

Query: 272 LNYIKEYCVGIGPWKDTVVPVANNYSQTPTDLVARAHALDLQIH 315
              ++     + P+   ++P          +LV       +++ 
Sbjct: 182 HMALRMEAYSLHPFYFNIIP----------ELVEGCKKNGVKLF 215

>3qvq_A Phosphodiesterase OLEI02445; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta hydrolase, hydrolase; HET: MSE G3P; 1.60A {Oleispira antarctica} Length = 252

 Score =  121 bits (306), Expect = 5e-33
 Identities = 58/282 (20%), Positives = 100/282 (35%), Gaps = 73/282 (25%)

Query: 37  QPLQTSRPYNLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLD 96
           Q   +  P  +AHRGS+G+ PE T A+   A ++G  ++E D++ S DG+ +  HD +L 
Sbjct: 3   QSAYSFLPQVIAHRGSSGQAPENTLASLHLAGQQGIKWVEIDVMLSGDGIPVIFHDDYLS 62

Query: 97  DTTNIADHKEFADRKRTCMVQGVNTTGFFVVDFTLEELKTLRAKQRYSFRDQQYNGKFPI 156
            TT+                 G       +    L ELK L A    S++ Q+Y  +  I
Sbjct: 63  RTTD---------------GDG------LIYKTPLAELKQLDAG---SWKGQEYQQE-TI 97

Query: 157 ITFEEYISIALDAQRVVGIYPEMKNPVFINQHVKWADGKKFEDKFVDTLKKYGYKGAYMS 216
            T  E I +       +G+  E+K              ++     V+ LK++        
Sbjct: 98  PTLLEAIEVISQYG--MGLNLELKPC--------EGLEEETIAASVEVLKQHW------- 140

Query: 217 KEWLKQPIFIQSFAPTSLVYISNKTDSPKI---FLIDDVDILTEDTNQSYSEITSDAYLN 273
                 P+   SF   +LV    K   P+I   + +  +                   L 
Sbjct: 141 --PQDLPLLFSSFNYFALVSA--KALWPEIARGYNVSAIPSAW------------QERLE 184

Query: 274 YIKEYCVGIGPWKDTVVPVANNYSQTPTDLVARAHALDLQIH 315
           ++   C G+            + S      V+   A   ++ 
Sbjct: 185 HLD--CAGLHI----------HQSFFDVQQVSDIKAAGYKVL 214

>3ks6_A Glycerophosphoryl diester phosphodiesterase; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.80A {Agrobacterium tumefaciens str} PDB: 3ks5_A* Length = 250

 Score =  119 bits (301), Expect = 2e-32
 Identities = 51/273 (18%), Positives = 88/273 (32%), Gaps = 66/273 (24%)

Query: 43  RPYNLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIA 102
                +HRG   EF + T   +        + +E D+  + DG ++ HHD  LD TT++ 
Sbjct: 2   MTRIASHRGGTLEFGDSTPHGFTATAAMALEEVEFDLHPTADGAIVVHHDPTLDATTDM- 60

Query: 103 DHKEFADRKRTCMVQGVNTTGFFVVDFTLEELKTLRAKQRYSFRDQQYNGKFPIITFEEY 162
                              TG  +VD TL ++KT   +                +T EE 
Sbjct: 61  -------------------TG-AIVDMTLAKVKTATIR---YGAGS------HPMTLEEL 91

Query: 163 ISIALDAQRVVGIYPEMKNPVFINQHVKWADGKKFEDKFVDTLKKYGYKGAYMSKEWLKQ 222
            ++ +D+   V    E+K  V         +G  F    +  L+++           + +
Sbjct: 92  CALYVDSH--VNFRCEIKPGV----DGLPYEG--FVALVIAGLERHS----------MLE 133

Query: 223 PIFIQSFAPTSLVYISNKTDSPKIFLIDDVDILTEDTNQSYSEITSDAYLNYIKEYCVGI 282
                SF   S+  +   T  P+++L+    +                    I      I
Sbjct: 134 RTTFSSFLLASMDELWKATTRPRLWLVSPSVL--------QQLGPGAVIETAIAHSIHEI 185

Query: 283 GPWKDTVVPVANNYSQTPTDLVARAHALDLQIH 315
           G   DT              L+A+  A  L   
Sbjct: 186 GVHIDTADA----------GLMAQVQAAGLDFG 208

>2o55_A Putative glycerophosphodiester phosphodiesterase; beta barrel, structural genomics, protein structure initiati 2; 2.81A {Galdieria sulphuraria} Length = 258

 Score =  120 bits (302), Expect = 2e-32
 Identities = 46/281 (16%), Positives = 87/281 (30%), Gaps = 72/281 (25%)

Query: 40  QTSRPYNLAHRG--SNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDD 97
           +   P  + HRG    G  PE T  +++  +E    +IETD+   K G ++  H    + 
Sbjct: 3   KVIIPKIVGHRGVGKEGLAPENTLRSFVLCMERNIPYIETDLRVCKTGEIVLFHGTP-EG 61

Query: 98  TTNIADHKEFADRKRTCMVQGVNTTGFFVVDFTLEELKTLRAKQRYSFRDQQYNGKFPII 157
           T                     + T   + D +LEELK L              G   I 
Sbjct: 62  TIP-----------FYK-----DGTS-RIGDLSLEELKRLDVG-----------GGHTIP 93

Query: 158 TFEEYISIALDAQRVVGIYPEMKNPVFINQHVKWADGKKFEDKFVDTLKKYGYKGAYMSK 217
           + EE      + +  + +  E+K   +  +            + +  ++KY         
Sbjct: 94  SLEELFVAIEEQKFNLKLNLELKGEEWKRKES------GDHQRLLLLVEKYH-------- 139

Query: 218 EWLKQPIFIQSFAPTSLVYISNKTDSPKI---FLIDDVDILTEDTNQSYSEITSDAYLNY 274
             +++ +   SF   +L ++  K   P +   +L + +   T            D     
Sbjct: 140 --MQERVDYCSFHHEALAHL--KALCPDVKITYLFNYMGQPT----------PLDFVEQA 185

Query: 275 IKEYCVGIGPWKDTVVPVANNYSQTPTDLVARAHALDLQIH 315
                 G+      +            + V  AH   L + 
Sbjct: 186 CYGDANGVSMLFHYLTK----------EQVCTAHEKGLSVT 216

>2otd_A Glycerophosphodiester phosphodiesterase; structural genomics PSI-2, protein structure initiative, midwest center for STR genomics, hydrolase; 2.60A {Shigella flexneri} Length = 247

 Score =  117 bits (295), Expect = 2e-31
 Identities = 48/276 (17%), Positives = 80/276 (28%), Gaps = 73/276 (26%)

Query: 43  RPYNLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIA 102
            P  +AHRG     PE T AA     + G   IE D   SKDG +   HD  L+ T+N  
Sbjct: 6   YPRIVAHRGGGKLAPENTLAAIDVGAKYGHKMIEFDAKLSKDGEIFLLHDDNLERTSN-- 63

Query: 103 DHKEFADRKRTCMVQGVNTTGFFVVDFTLEELKTLRAKQRYSFRDQQYNGKFPIITFEEY 162
                          GV        +   ++L  + A    S+  + + G+ P+    + 
Sbjct: 64  -------------GWGV------AGELNWQDLLRVDAG---SWYSKAFKGE-PLPLLSQV 100

Query: 163 ISIALDAQRVVGIYPEMKNPVFINQHVKWADGKKFEDKFVDTLKKYGYKGAYMSKEWLKQ 222
                  +  +    E+K                   K V    +  + G          
Sbjct: 101 AERC--REHGMMANIEIKPT---------TGTGPLTGKMVALAARQLWAGM--------T 141

Query: 223 PIFIQSFAPTSLVYISNKTDSPKI---FLIDDVDILTEDTNQSYSEITSDAYLNYIKEYC 279
           P  + SF   +L     +  +P++    L+D+      +                    C
Sbjct: 142 PPLLSSFEIDALEAA--QQAAPELPRGLLLDEWRDDWRELTARL--------------GC 185

Query: 280 VGIGPWKDTVVPVANNYSQTPTDLVARAHALDLQIH 315
           V I      +              V +     L+I 
Sbjct: 186 VSIHLNHKLLDK----------ARVMQLKDAGLRIL 211

>3i10_A Putative glycerophosphoryl diester phosphodiester; NP_812074.1; HET: MSE; 1.35A {Bacteroides thetaiotaomicron vpi-5482} Length = 278

 Score =  116 bits (291), Expect = 1e-30
 Identities = 53/283 (18%), Positives = 93/283 (32%), Gaps = 68/283 (24%)

Query: 40  QTSRPYNLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTT 99
           ++++   +AHRG+    PE + AA   AI    D +E DI  +KDG LI  HD  LD TT
Sbjct: 14  KSNKVLVVAHRGNWRSAPENSTAAIDSAIAMKVDIVEIDIQKTKDGQLILMHDNTLDRTT 73

Query: 100 NIADHKEFADRKRTCMVQGVNTTGFFVVDFTLEELKTLRAKQRYSFRDQQYNGKFPIITF 159
                                  G  + ++TL ++K L+ K     +D +    + + T 
Sbjct: 74  TG--------------------KG-EIKNWTLADIKKLKLKD----KDGKVTN-YVVPTL 107

Query: 160 EEYISIALDAQRVVGIYPEMKNPVFINQHVKWADGKKFEDKFVDTLKKYGYKGAYMSKEW 219
           EE +  A             K  + +N    +       D     L+K            
Sbjct: 108 EEALLTA-------------KGKIMVNLDKAYDI----FDDVYAILEKTE---------- 140

Query: 220 LKQPIFIQSFAPTSLVYISNKTDSPKIFLIDDVDILTEDTNQSYSEITSDAYLNYIKEYC 279
            +  + ++   P   V     +   K+  +  +D+  ++  +         YL  ++   
Sbjct: 141 TQNQVIMKGGQPIETVKREFGSYLDKVLYMPVIDLGNKEAEKII-----TDYLKELRPAA 195

Query: 280 VGIGPWKDTVVPVANNYSQTPTDLVARAHALDLQIHIGNTTTG 322
             I                 P   + +       I   NT  G
Sbjct: 196 FEIIYSDPKNP--------LP-PKIKQLLFKKSLIWY-NTLWG 228

>3no3_A Glycerophosphodiester phosphodiesterase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.89A {Parabacteroides distasonis} Length = 238

 Score =  112 bits (282), Expect = 1e-29
 Identities = 42/277 (15%), Positives = 74/277 (26%), Gaps = 80/277 (28%)

Query: 42  SRPYNLAHRGSNG--EFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTT 99
                +AHRG        + +  +  RA E GA   E D+  + D VL+ +HD  +    
Sbjct: 3   DNTKVIAHRGYWKTEGSAQNSIRSLERASEIGAYGSEFDVHLTADNVLVVYHDNDIQGKH 62

Query: 100 NIADHKEFADRKRTCMVQGVNTTGFFVVDFTLEELKTLRAKQRYSFRDQQYNGKFPIITF 159
                                     +   T +ELK L+                 + T 
Sbjct: 63  --------------------------IQSCTYDELKDLQLS-----------NGEKLPTL 85

Query: 160 EEYISIALDAQRVVGIYPEMKNPVFINQHVKWADGKKFEDKFVDTLKKYGYKGAYMSKEW 219
           E+Y+  A   +  + +  E+K+      H      +      V  +K+            
Sbjct: 86  EQYLKRAKKLKN-IRLIFELKS------HDTPERNRDAARLSVQMVKRMK---------- 128

Query: 220 LKQPIFIQSFAPTSLVYISNKTDSPKIFLIDDVDILTEDTNQSYSEITSDAYLNYIKEYC 279
           L +     SF   +          PK  +      L  +         S   L  +    
Sbjct: 129 LAKRTDYISFNMDACKEF--IRLCPKSEVS----YLNGE--------LSPMELKELGFTG 174

Query: 280 VGIGPWKDTVVPVANNYSQTPTDLVARAHALDLQIHI 316
           +          P          D V     L +  ++
Sbjct: 175 LDYHYKVLQSHP----------DWVKDCKVLGMTSNV 201

>1zcc_A Glycerophosphodiester phosphodiesterase; NYSGXRC, agrobacterium tumefaciens STR. C58, structural genomics; 2.50A {Agrobacterium tumefaciens str} SCOP: c.1.18.3 Length = 248

 Score =  111 bits (279), Expect = 4e-29
 Identities = 51/273 (18%), Positives = 89/273 (32%), Gaps = 75/273 (27%)

Query: 44  PYNLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIAD 103
              ++HRG+N   PE T AA   A+++GAD+IE D+  S DGVL   HD  LD TTN   
Sbjct: 2   TKIVSHRGANRFAPENTFAAADLALQQGADYIELDVRESADGVLYVIHDETLDRTTN--- 58

Query: 104 HKEFADRKRTCMVQGVNTTGFFVVDFTLEELKTLRAKQRYSFRDQQYNGKFPIITFEEYI 163
                         G       V      E+ TL A     + D ++ G   +   + Y+
Sbjct: 59  ------------GTGP------VGHMLSSEIDTLDAG---GWFDDRFKGA-IVPRLDAYL 96

Query: 164 SIALDAQRVVGIYPEMKNPVFINQHVKWADGKKFEDKFVDTLKKYGYKGAYMSKEWLKQP 223
                 +   G+Y E+K                   K    ++  G          + + 
Sbjct: 97  EH---LRGRAGVYIELKYCD--------------PAKVAALVRHLG----------MVRD 129

Query: 224 IFIQSFAPTSLVYISNKTDSPKIFLIDDVDILTEDTNQSYSEITSDAYLNYIKEYCVGIG 283
            F  SF+      +  ++ +P+                +     S + +  +    +   
Sbjct: 130 TFYFSFSEEMRQGL--QSIAPEF-----------RRMMTLDIAKSPSLVGAVHHASIIEI 176

Query: 284 PWKDTVVPVANNYSQTPTDLVARAHALDLQIHI 316
                  P           ++  +    L+I +
Sbjct: 177 TPAQMRRP----------GIIEASRKAGLEIMV 199

>1o1z_A GDPD, glycerophosphodiester phosphodiesterase; TM1621, glycerophosphodiester phosphodiesterase (GDPD), STRU genomics, JCSG, PSI; 1.60A {Thermotoga maritima} SCOP: c.1.18.3 Length = 234

 Score =  105 bits (265), Expect = 3e-27
 Identities = 48/278 (17%), Positives = 83/278 (29%), Gaps = 82/278 (29%)

Query: 39  LQTSRPYNLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDT 98
                   L HRG + ++ E T  A+M+AIE GA+ +E D+  SKDG ++  HD  L   
Sbjct: 8   HHHHHVIVLGHRGYSAKYLENTLEAFMKAIEAGANGVELDVRLSKDGKVVVSHDEDLKRL 67

Query: 99  TNIADHKEFADRKRTCMVQGVNTTGFFVVDFTLEELKTLRAKQRYSFRDQQYNGKFPIIT 158
             +                        + D T+ ELK L              GK    T
Sbjct: 68  FGL--------------------DV-KIRDATVSELKELTD------------GKIT--T 92

Query: 159 FEEYISIALDAQRVVGIYPEMKNPVFINQHVKWADGKKFEDKFVDTLKKYGYKGAYMSKE 218
            +E             I  E+K               +  D  ++  KK           
Sbjct: 93  LKEVFEN---VSDDKIINIEIKER-------------EAADAVLEISKKR---------- 126

Query: 219 WLKQPIFIQSFAPTSLVYISNKTDSPKIFLIDDVDILTEDTNQSYSEITSDAYLNYIKEY 278
              + +   SF    L        +   +LID+ +  + +             +   + Y
Sbjct: 127 ---KNLIFSSFDLDLLDEKFK--GTKYGYLIDEENYGSIENFVE--------RVEKERPY 173

Query: 279 CVGIGPWKDTVVPVANNYSQTPTDLVARAHALDLQIHI 316
            +         VP      +   +++       + I +
Sbjct: 174 SLH--------VPYQAFELEYAVEVLRSFRKKGIVIFV 203

>3mz2_A Glycerophosphoryl diester phosphodiesterase; structural genomics, joint center for structural genomics; HET: MSE PE4; 1.55A {Parabacteroides distasonis} Length = 292

 Score =  106 bits (267), Expect = 4e-27
 Identities = 44/287 (15%), Positives = 79/287 (27%), Gaps = 73/287 (25%)

Query: 31  KLDIHKQPLQTSRPYNLAHRGSNGE-FPEETAAAYMRAIEEGADFIETDILASKDGVLIC 89
            L    Q      P    HRG  G+ +PE +   +   +       E D   +KD V++ 
Sbjct: 19  DLISFYQYADDRIPLISGHRGGRGKGYPENSMETFENTLSYTPATFEIDPRLTKDSVIVL 78

Query: 90  HHDVFLDDTTNIADHKEFADRKRTCMVQGVNTTGFFVVDFTLEELKTLRAKQRYSFRDQQ 149
            HD  L+ T+N                     TG  V D+T EEL+  R K         
Sbjct: 79  FHDDTLERTSNG--------------------TG-KVSDYTWEELQNFRLKDPEG----N 113

Query: 150 YNGKFPIITFEEYISIALDAQRVVGIYPEMKNPVFINQHVKWADGKKFEDKFVDTLKKYG 209
               + I T EE I  A        +  + K+                 ++    +    
Sbjct: 114 ITN-YRIPTLEEAIRWARGK---TILILDKKDVPM--------------ERTAQLITDMQ 155

Query: 210 YKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTDSPKIFLIDDVDILTEDTNQSYSEITSD 269
                      +  + I      S  +   K  +                      + + 
Sbjct: 156 ----------AEPYVMITVHDGASARFFYEKNPNFMFEAF----------------VKTK 189

Query: 270 AYLNYIKEYCVGIGPWKDTVVPVANNYSQTPTDLVARAHALDLQIHI 316
             +   ++  +   PW   +  V    +    +++   H   +   I
Sbjct: 190 EAVQDYEDNGI---PWSHIMAYVGPKITPEVREVIDMLHERGVMCMI 233

>1vd6_A Glycerophosphoryl diester phosphodiesterase; glycerophosphod phosphodiesterase, HB8; 1.30A {Thermus thermophilus} SCOP: c.1.18.3 PDB: 1v8e_A Length = 224

 Score = 94.6 bits (236), Expect = 3e-23
 Identities = 41/274 (14%), Positives = 79/274 (28%), Gaps = 91/274 (33%)

Query: 43  RPYNLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIA 102
           RP  L HRG+  +  E T  ++  A+E G D +E D+  ++DGV    H    D  T   
Sbjct: 7   RPLRLGHRGAPLKAKENTLESFRLALEAGLDGVELDVWPTRDGVFAVRH----DPDT--- 59

Query: 103 DHKEFADRKRTCMVQGVNTTGFFVVDFTLEELKTLRAKQRYSFRDQQYNGKFPIITFEEY 162
                                  V      +LK                    +   EE 
Sbjct: 60  ------PLGP-------------VFQVDYADLKAQEPD---------------LPRLEEV 85

Query: 163 ISIALDAQRVVGIYPEMKNPVFINQHVKWADGKKFEDKFVDTLKKYGYKGAYMSKEWLKQ 222
           ++   +A        E+K+            G++   +    L+               +
Sbjct: 86  LA-LKEAFPQAVFNVELKSFP--------GLGEEAARRLAALLRGR-------------E 123

Query: 223 PIFIQSFAPTSLVYISNKTDSPKIFLIDDVDILTEDTNQSYSEITSDAYLNYIKEY-CVG 281
            +++ SF P +L+ +  +  +P + L                 + ++ +   +       
Sbjct: 124 GVWVSSFDPLALLAL--RKAAPGLPL---------------GFLMAEDHSALLPCLGVEA 166

Query: 282 IGPWKDTVVPVANNYSQTPTDLVARAHALDLQIH 315
           + P    V            + VA      L + 
Sbjct: 167 VHPHHALVTE----------EAVAGWRKRGLFVV 190

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.0 bits (121), Expect = 3e-07
 Identities = 46/307 (14%), Positives = 91/307 (29%), Gaps = 81/307 (26%)

Query: 37  QPLQTSRPYNLAHR-GSNGEFPEETAAAYMRAIEEGADFIETDILASKD---GVLICHHD 92
           + LQ      L ++   N     + ++     I      +   +L SK     +L+    
Sbjct: 200 EMLQ-----KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR-RLLKSKPYENCLLV---- 249

Query: 93  VFLDDTTNIADHKEFA----------DRKRTCMVQGVNTTGFFVVD----FTLEELKTLR 138
             L +  N      F            ++ T  +    TT   +       T +E+K+L 
Sbjct: 250 --LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL 307

Query: 139 AKQRYSFRDQQYNGKFPIITFEEYISIALDAQRVVGIYPEM-KNPVFINQHVKWADGKKF 197
            K    + D +     P     E ++      R + I  E  ++ +    + K  +  K 
Sbjct: 308 LK----YLDCRP-QDLP----REVLTTNP---RRLSIIAESIRDGLATWDNWKHVNCDKL 355

Query: 198 E---DKFVDTLKKYGYKGAY----------------MSKEWLKQP-----IFIQSFAPTS 233
               +  ++ L+   Y+  +                +S  W         + +      S
Sbjct: 356 TTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYS 415

Query: 234 LVYISNKTDSPKIFLIDDV--DILTEDTNQSY--SEITSDAYLNYIKEYCVGIGPWKDTV 289
           LV    K        I  +  ++  +  N+      I  D Y N  K +        D +
Sbjct: 416 LV---EKQPKESTISIPSIYLELKVKLENEYALHRSIV-DHY-NIPKTFD-----SDDLI 465

Query: 290 VPVANNY 296
            P  + Y
Sbjct: 466 PPYLDQY 472

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.8 bits (97), Expect = 3e-04
 Identities = 42/286 (14%), Positives = 88/286 (30%), Gaps = 61/286 (21%)

Query: 10  PLLFLSLIAGCAARPLYPLPSKLDIHKQPLQTSRPYNLAHRGSNGEFPEETAAAYMR-AI 68
           P   LS+IA      +    +  D  K  +   +   +     N   P E    + R ++
Sbjct: 327 PRR-LSIIA----ESIRDGLATWDNWKH-VNCDKLTTIIESSLNVLEPAEYRKMFDRLSV 380

Query: 69  -EEGADFIETDILASKDGVLICHHDVFLDDTTNIADH---KEFADR---KRTCMVQGVNT 121
               A  I T +L+      +   DV   D   + +        ++   + T  +  +  
Sbjct: 381 FPPSAH-IPTILLS------LIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI-- 431

Query: 122 TGFFVVDFTLEELKTLRAK--QRYSFRDQQYNGKFPIITFEEYI--------SIALDAQR 171
             +  +   LE    L       Y+      +        ++Y               +R
Sbjct: 432 --YLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPER 489

Query: 172 VVG---IYPEMKNPVFINQHVK-----WADGKKFEDKFVDTLKKYGYKGAYMSKEWLKQP 223
           +     ++ + +   F+ Q ++     W       +     LK Y     Y+       P
Sbjct: 490 MTLFRMVFLDFR---FLEQKIRHDSTAWNASGSILNTLQQ-LKFY---KPYICD---NDP 539

Query: 224 IF------IQSFAPT--SLVYISNKTDSPKIFLIDDVDILTEDTNQ 261
            +      I  F P     +  S  TD  +I L+ + + + E+ ++
Sbjct: 540 KYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHK 585

>3rlg_A Sphingomyelin phosphodiesterase D lisictox-alphai; TIM beta/alpha-barrel, PLC-like phosphodiesterase, inactive H12A phospholipase D; HET: PGE; 1.60A {Loxosceles intermedia} PDB: 3rlh_A* Length = 302

 Score = 45.2 bits (106), Expect = 1e-05
 Identities = 13/89 (14%), Positives = 25/89 (28%), Gaps = 12/89 (13%)

Query: 35  HKQPLQTSRP-YNLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLI-CHHD 92
                   RP + +                    +  GA+ IETD+    +      +H 
Sbjct: 19  SHMLEGNRRPIWIMGAM-------VNAIGQIDEFVNLGANSIETDVSFDDNANPEYTYHG 71

Query: 93  VFLD---DTTNIADHKEFADRKRTCMVQG 118
           +  D   +     +  +F    R+    G
Sbjct: 72  IPCDCGRNCKKYENFNDFLKGLRSATTPG 100

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	322
1ydy_A	356	Glycerophosphoryl diester phosphodiesterase; struc	100.0
2pz0_A	252	Glycerophosphoryl diester phosphodiesterase; glyce	100.0
3qvq_A	252	Phosphodiesterase OLEI02445; structural genomics,	100.0
2oog_A	287	Glycerophosphoryl diester phosphodiesterase; phosp	100.0
2otd_A	247	Glycerophosphodiester phosphodiesterase; structura	100.0
3ks6_A	250	Glycerophosphoryl diester phosphodiesterase; struc	100.0
3ch0_A	272	Glycerophosphodiester phosphodiesterase; YP_677622	100.0
3l12_A	313	Putative glycerophosphoryl diester phosphodiester;	100.0
2o55_A	258	Putative glycerophosphodiester phosphodiesterase;	100.0
1zcc_A	248	Glycerophosphodiester phosphodiesterase; NYSGXRC,	100.0
3no3_A	238	Glycerophosphodiester phosphodiesterase; structura	100.0
3mz2_A	292	Glycerophosphoryl diester phosphodiesterase; struc	100.0
1o1z_A	234	GDPD, glycerophosphodiester phosphodiesterase; TM1	100.0
1vd6_A	224	Glycerophosphoryl diester phosphodiesterase; glyce	100.0
3i10_A	278	Putative glycerophosphoryl diester phosphodiester;	100.0
1xx1_A	285	Smase I, sphingomyelinase I; structure, quick cryo	99.97
3rlg_A	302	Sphingomyelin phosphodiesterase D lisictox-alphai;	99.73
1djx_A	624	PLC-D1, phosphoinositide-specific phospholipase C,	95.3
2zkm_X	799	1-phosphatidylinositol-4,5-bisphosphate phosphodie	94.94
3qr0_A	816	Phospholipase C-beta (PLC-beta); PH domain, EF han	94.5
3ohm_B	885	1-phosphatidylinositol-4,5-bisphosphate phosphodi	93.17
3h4x_A	339	Phosphatidylinositol-specific phospholipase C1; PI	92.3

>1ydy_A Glycerophosphoryl diester phosphodiesterase; structural genomics, PSI, protein structu initiative; 1.70A {Escherichia coli} SCOP: c.1.18.3 PDB: 1t8q_A

Probab=100.00  E-value=6.8e-48  Score=364.25  Aligned_cols=278  Identities=31%  Similarity=0.512  Sum_probs=191.0

Q ss_pred             HHHHHHHHHhhcCCCCCCCCCCCcccCcCCCCCCCCeEEeeCCCCCCCchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEE
Q 020686            9 IPLLFLSLIAGCAARPLYPLPSKLDIHKQPLQTSRPYNLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLI   88 (322)
Q Consensus         9 ~~~~~~~l~~~c~~~~~~~~~~~~~~~~~~~~~~~p~iiaHRG~~~~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~V   88 (322)
                      +.++++++++||......              .++|.+|||||+++.+||||++||++|++.|+|+||||||+||||++|
T Consensus        10 ~~~~~~~~~~~c~~~~~~--------------~~~~~iiaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDg~lV   75 (356)
T 1ydy_A           10 MAIMMSTIVMGSSAMAAD--------------SNEKIVIAHRGASGYLPEHTLPAKAMAYAQGADYLEQDLVMTKDDNLV   75 (356)
T ss_dssp             ---------------------------------CCCEEEETTTTTTTSSTTCHHHHHHHHHTTCSEEEEEEEECTTSCEE
T ss_pred             HHHHHHHhhhhhhhcccc--------------CCCceEEEeCCCCCCCCcchHHHHHHHHHcCCCEEEeeeEECCCCcEE
Confidence            445556778999984431              568999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCCccccCCCCcccccccccccccCCcccccceeeccCHHHHccCccccccc---------C--CCcccCCCcccc
Q 020686           89 CHHDVFLDDTTNIADHKEFADRKRTCMVQGVNTTGFFVVDFTLEELKTLRAKQRYS---------F--RDQQYNGKFPII  157 (322)
Q Consensus        89 v~HD~~l~r~t~~~~~~~~~~~~~~~~~~g~~~~g~~i~~~t~~el~~l~~~~~~~---------~--r~~~~~~~~~ip  157 (322)
                      |+||.+|+|+|++..  .|+.+.+.   +|.   | .|.++||+||++|+++.++.         |  +.+...+.++||
T Consensus        76 v~HD~~l~rtt~~~~--~f~~~~~~---~g~---~-~v~d~T~~eL~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ip  146 (356)
T 1ydy_A           76 VLHDHYLDRVTDVAD--RFPDRARK---DGR---Y-YAIDFTLDEIKSLKFTEGFDIENGKKVQTYPGRFPMGKSDFRVH  146 (356)
T ss_dssp             ECSSSBCTTTBSHHH--HSTTCCCT---TSC---C-BGGGSCHHHHHHSCBCSCEEEETTEEEESSTTSSCTTCSCCCCC
T ss_pred             EeCCChHHhhcCccc--cccccccc---CCC---c-chhhCcHHHHHhCCCCccccccccccccccccccccccCCCcCC
Confidence            999999999999764  45554331   221   3 79999999999999987652         1  111122346999


Q ss_pred             CHHHHHHHHHhc----CCcceEeeeeCCcccccccccccCcchHHHHHHHHHHHcCCCCccccccccCCCEEEeccChhH
Q 020686          158 TFEEYISIALDA----QRVVGIYPEMKNPVFINQHVKWADGKKFEDKFVDTLKKYGYKGAYMSKEWLKQPIFIQSFAPTS  233 (322)
Q Consensus       158 tL~e~l~~~~~~----~~~~~l~iEiK~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~rv~i~Sf~~~~  233 (322)
                      ||+|+|+.++.+    +..++++||+|.+.....     .+..+++.++++++++++...       .++++||||++++
T Consensus       147 tL~evl~~~~~~~~~~~~~~~l~iEiK~~~~~~~-----~~~~~~~~v~~~l~~~~~~~~-------~~~v~i~SF~~~~  214 (356)
T 1ydy_A          147 TFEEEIEFVQGLNHSTGKNIGIYPEIKAPWFHHQ-----EGKDIAAKTLEVLKKYGYTGK-------DDKVYLQCFDADE  214 (356)
T ss_dssp             BHHHHHHHHHHHHHHHSCCCEEEEEECCHHHHHH-----TTCCHHHHHHHHHHHTTCCST-------TSSBEEEESCHHH
T ss_pred             CHHHHHHHHHHhhhcccCCceEEEeecCcccccc-----cchhHHHHHHHHHHHcCCCCC-------CCCEEEEcCCHHH
Confidence            999999999853    235899999998653211     234689999999999997420       1489999999999


Q ss_pred             HHHHhhc-----CC-CCeEEEEeccCccC--------CCCcccccccccHHHHHHHHhhccccCCCcceeeec-CCCCCC
Q 020686          234 LVYISNK-----TD-SPKIFLIDDVDILT--------EDTNQSYSEITSDAYLNYIKEYCVGIGPWKDTVVPV-ANNYSQ  298 (322)
Q Consensus       234 l~~~~~~-----~~-~~~v~l~~~~~~~~--------~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~-~~~~~~  298 (322)
                      |+++|++     .| .+.++|+.......        ...+..|..+.....++.+..++.+++++...+.+. ......
T Consensus       215 l~~~~~~~~p~~~p~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~i~p~~~~~~~~~~~~~~~  294 (356)
T 1ydy_A          215 LKRIKNELEPKMGMELNLVQLIAYTDWNETQQKQPDGSWVNYNYDWMFKPGAMKQVAEYADGIGPDYHMLIEETSQPGNI  294 (356)
T ss_dssp             HHHHHHTHHHHHTCCCEEEEEECCGGGCCCEEECTTSCEEECCCGGGGSTTHHHHHTTTCSEEEEBGGGTBCTTCBTTBC
T ss_pred             HHHHHhhcccccCCCceEEEEeccCcccccccccccccccccchhhhcchhhHHHHHhhCeEEccCHHHhcccccccccc
Confidence            9999997     45 45667765321100        000112332323334666677777777765444321 111223


Q ss_pred             CChHHHHHHHHcCCeEEEEeCCC
Q 020686          299 TPTDLVARAHALDLQIHIGNTTT  321 (322)
Q Consensus       299 ~~~~~v~~ah~~Gl~V~vWTvn~  321 (322)
                      .++++|+.+|++|++|++||||+
T Consensus       295 ~~~~~v~~ah~~Gl~V~~WTvn~  317 (356)
T 1ydy_A          295 KLTGMVQDAQQNKLVVHPYTVRS  317 (356)
T ss_dssp             CBCSHHHHHHHTTCEECCBCBCT
T ss_pred             CCHHHHHHHHHCCCEEEEEEECc
Confidence            56999999999999999999996

>2pz0_A Glycerophosphoryl diester phosphodiesterase; glycerophosphodiester phosphodiesterase, T. tengcongensis; 1.91A {Thermoanaerobacter tengcongensis}

Probab=100.00  E-value=3.7e-46  Score=336.40  Aligned_cols=214  Identities=29%  Similarity=0.388  Sum_probs=171.2

Q ss_pred             CCCCCeEEeeCCCCCCCchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCCccccCCCCcccccccccccccCCc
Q 020686           40 QTSRPYNLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGV  119 (322)
Q Consensus        40 ~~~~p~iiaHRG~~~~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~~~~~g~  119 (322)
                      ..-+|.+|||||+++.+||||++||++|++.|+|+||+|||+||||++||+||.+++|+|++.                 
T Consensus         8 ~~~~p~iiaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDG~lVv~HD~~l~Rtt~~~-----------------   70 (252)
T 2pz0_A            8 HSMKTLVIAHRGDSKNVPENTIAAFKRAMELGADGIELDVQLTKDGHLVVIHDETVDRTTNGE-----------------   70 (252)
T ss_dssp             ---CCEEEEETTTTTTSCTTSHHHHHHHHHHTCSEEEEEEEECTTCCEEECSSSBSTTTSSCC-----------------
T ss_pred             ccCCceEEEcCCCCCCCCcchHHHHHHHHHcCCCEEEEEEEEecCCeEEEEcCCcccccCCCC-----------------
Confidence            345799999999999999999999999999999999999999999999999999999999987                 


Q ss_pred             ccccceeeccCHHHHccCcccccccCCCcccCCCccccCHHHHHHHHHhcCCcceEeeeeCCcccccccccccCcchHHH
Q 020686          120 NTTGFFVVDFTLEELKTLRAKQRYSFRDQQYNGKFPIITFEEYISIALDAQRVVGIYPEMKNPVFINQHVKWADGKKFED  199 (322)
Q Consensus       120 ~~~g~~i~~~t~~el~~l~~~~~~~~r~~~~~~~~~iptL~e~l~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~~~~  199 (322)
                         | .|.++|++||++|+++.++.   +.|.+ ++||||+|+|+.++.  ..+.++||+|.+..        ....+++
T Consensus        71 ---g-~v~~~t~~eL~~l~~~~~~~---~~~~~-~~iPtL~evL~~~~~--~~~~l~iEiK~~~~--------~~~~~~~  132 (252)
T 2pz0_A           71 ---G-FVKDFTLEEIKKLDAGIKFG---EKFAG-ERIPTLYEVFELIGD--KDFLVNIEIKSGIV--------LYPGIEE  132 (252)
T ss_dssp             ---S-BGGGSCHHHHTTSCSSTTTC---GGGTT-CCCCBHHHHHHHHTT--SCCEEEEEECCSSC--------CCTTHHH
T ss_pred             ---c-chhhCcHHHHhhcCCCCCCC---CCCCC-CcCCCHHHHHHHhhh--cCCeEEEEeCCCCc--------ccHHHHH
Confidence               4 79999999999999987653   34555 599999999999864  24899999998642        1235889


Q ss_pred             HHHHHHHHcCCCCccccccccCCCEEEeccChhHHHHHhhcCCCCe-EEEEeccCccCCCCcccccccccHHHHHHHHhh
Q 020686          200 KFVDTLKKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTDSPK-IFLIDDVDILTEDTNQSYSEITSDAYLNYIKEY  278 (322)
Q Consensus       200 ~v~~~l~~~~~~~~~~~~~~~~~rv~i~Sf~~~~l~~~~~~~~~~~-v~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  278 (322)
                      .++++++++++.+          +++|+||+++.|++++++.|... .+++.....   +            ..+.++. 
T Consensus       133 ~v~~~l~~~~~~~----------~vii~SF~~~~l~~~~~~~p~~~~~~l~~~~~~---~------------~~~~~~~-  186 (252)
T 2pz0_A          133 KLIKAIKEYNFEE----------RVIISSFNHYSLRDVKKMAPHLKIGLLYQCGLV---E------------PWHMALR-  186 (252)
T ss_dssp             HHHHHHHHTTCTT----------TEEEEESBHHHHHHHHHHCTTSEEEEEECSBCS---S------------THHHHHH-
T ss_pred             HHHHHHHhcCCCC----------CEEEEeCCHHHHHHHHHHCCCCCEEEEecCccc---c------------HHHHHHH-
Confidence            9999999998764          89999999999999999877544 454433210   0            0112222 


Q ss_pred             ccccCCCcceeeecCCCCCCCChHHHHHHHHcCCeEEEEeCCCC
Q 020686          279 CVGIGPWKDTVVPVANNYSQTPTDLVARAHALDLQIHIGNTTTG  322 (322)
Q Consensus       279 ~~~i~~~~~~~~~~~~~~~~~~~~~v~~ah~~Gl~V~vWTvn~~  322 (322)
                         +++  ..+.+   ++..+++++|+.+|++|++|++||||+|
T Consensus       187 ---~~~--~~i~~---~~~~~~~~~v~~~~~~G~~v~~wTvn~~  222 (252)
T 2pz0_A          187 ---MEA--YSLHP---FYFNIIPELVEGCKKNGVKLFPWTVDRK  222 (252)
T ss_dssp             ---TTC--SEEEE---BGGGCCHHHHHHHHHTTCEECCBCCCSH
T ss_pred             ---cCC--eEEec---chhcCCHHHHHHHHHCCCEEEEECCCCH
Confidence               111  22333   3556799999999999999999999985

>3qvq_A Phosphodiesterase OLEI02445; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta hydrolase, hydrolase; HET: MSE G3P; 1.60A {Oleispira antarctica}

Probab=100.00  E-value=6.2e-46  Score=334.94  Aligned_cols=217  Identities=24%  Similarity=0.256  Sum_probs=172.8

Q ss_pred             CCCCCCCeEEeeCCCCCCCchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCCccccCCCCcccccccccccccC
Q 020686           38 PLQTSRPYNLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQ  117 (322)
Q Consensus        38 ~~~~~~p~iiaHRG~~~~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~~~~~  117 (322)
                      .+..++|.+|||||+++.+||||++||++|++.|+|+||+|||+||||++||+||.+++|+|++.               
T Consensus         4 ~~~~~~p~iiaHRG~~~~~pENTl~af~~A~~~G~d~iE~DV~lT~Dg~~Vv~HD~~l~r~t~~~---------------   68 (252)
T 3qvq_A            4 SAYSFLPQVIAHRGSSGQAPENTLASLHLAGQQGIKWVEIDVMLSGDGIPVIFHDDYLSRTTDGD---------------   68 (252)
T ss_dssp             SGGGGCCSEEEETTTTTTSCTTSHHHHHHHHHTTCSEEEEEEEECTTSCEEECCCSBSTTTSSCC---------------
T ss_pred             ccCCCCCEEEEeCCCCCCCCccHHHHHHHHHHcCCCEEEEEEEECCCCcEEEECCCccccccCCC---------------
Confidence            35567899999999999999999999999999999999999999999999999999999999987               


Q ss_pred             CcccccceeeccCHHHHccCcccccccCCCcccCCCccccCHHHHHHHHHhcCCcceEeeeeCCcccccccccccCcchH
Q 020686          118 GVNTTGFFVVDFTLEELKTLRAKQRYSFRDQQYNGKFPIITFEEYISIALDAQRVVGIYPEMKNPVFINQHVKWADGKKF  197 (322)
Q Consensus       118 g~~~~g~~i~~~t~~el~~l~~~~~~~~r~~~~~~~~~iptL~e~l~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~~  197 (322)
                           | .|.++|++||++|+++.++.   +.|.+ +++|||+|+|+.+++.+  +.++||||....        ....+
T Consensus        69 -----~-~v~~~t~~el~~l~~~~~~~---~~~~~-~~iptL~evl~~~~~~~--~~l~iEiK~~~~--------~~~~~  128 (252)
T 3qvq_A           69 -----G-LIYKTPLAELKQLDAGSWKG---QEYQQ-ETIPTLLEAIEVISQYG--MGLNLELKPCEG--------LEEET  128 (252)
T ss_dssp             -----S-BGGGSCHHHHTTSCSSTTTC---GGGTT-CCCCBHHHHHHHHHHTT--CEEEEEECCCTT--------CHHHH
T ss_pred             -----c-eeecCcHHHHhcCCCCCccC---ccCCC-CcCcCHHHHHHHHhccC--cEEEEEecCCCC--------ccHHH
Confidence                 4 79999999999999987653   34555 59999999999997543  899999996431        11347


Q ss_pred             HHHHHHHHHHcCCCCccccccccCCCEEEeccChhHHHHHhhcCCCCeE-EEEeccCccCCCCcccccccccHHHHHHHH
Q 020686          198 EDKFVDTLKKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTDSPKI-FLIDDVDILTEDTNQSYSEITSDAYLNYIK  276 (322)
Q Consensus       198 ~~~v~~~l~~~~~~~~~~~~~~~~~rv~i~Sf~~~~l~~~~~~~~~~~v-~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~  276 (322)
                      ++.+.+++++++...         ++++++||+++.|+++|++.|...+ ++.....       .        ...+.++
T Consensus       129 ~~~v~~~l~~~~~~~---------~~vii~SF~~~~l~~~~~~~p~~~~~~l~~~~~-------~--------~~~~~~~  184 (252)
T 3qvq_A          129 IAASVEVLKQHWPQD---------LPLLFSSFNYFALVSAKALWPEIARGYNVSAIP-------S--------AWQERLE  184 (252)
T ss_dssp             HHHHHHHHHHHSCTT---------SCEEEEESCHHHHHHHHHHCTTSCEEEECSSCC-------T--------THHHHHH
T ss_pred             HHHHHHHHHHhCccc---------CCEEEEeCCHHHHHHHHHHCCCCcEEEEEecCc-------h--------hHHHHHH
Confidence            788899999987642         3899999999999999999776544 4443211       0        0112222


Q ss_pred             hhccccCCCcceeeecCCCCCCCChHHHHHHHHcCCeEEEEeCCCC
Q 020686          277 EYCVGIGPWKDTVVPVANNYSQTPTDLVARAHALDLQIHIGNTTTG  322 (322)
Q Consensus       277 ~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~ah~~Gl~V~vWTvn~~  322 (322)
                      .    +++  ..+.+   ++..+++++|+.+|++|++|++||||+|
T Consensus       185 ~----~~~--~~i~~---~~~~~~~~~v~~~~~~G~~v~~WTvn~~  221 (252)
T 3qvq_A          185 H----LDC--AGLHI---HQSFFDVQQVSDIKAAGYKVLAFTINDE  221 (252)
T ss_dssp             H----HTC--SEEEE---EGGGCCHHHHHHHHHTTCEEEEECCCCH
T ss_pred             H----cCC--eEEec---chhhCCHHHHHHHHHCCCEEEEEcCCCH
Confidence            1    121  12332   4567799999999999999999999985

>2oog_A Glycerophosphoryl diester phosphodiesterase; phosphatase, ST genomics, protein structure initiative, PSI; 2.20A {Staphylococcus aureus subsp} PDB: 2p76_A

Probab=100.00  E-value=1.3e-45  Score=339.01  Aligned_cols=226  Identities=29%  Similarity=0.422  Sum_probs=175.6

Q ss_pred             CCCCCeEEeeCCCCCCCchhHHHHHHHH-HHcCCCEEEeeeeEcCCCeEEEEeCCCCccccCCCCcccccccccccccCC
Q 020686           40 QTSRPYNLAHRGSNGEFPEETAAAYMRA-IEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQG  118 (322)
Q Consensus        40 ~~~~p~iiaHRG~~~~~pENT~~Af~~A-~~~G~d~iE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~~~~~g  118 (322)
                      ...+|.+|||||+++.+||||++||++| ++.|+|+||+|||+||||++||+||.+|+|+|++.                
T Consensus        20 ~~~~~~iiAHRG~~~~~PENTl~Af~~A~~~~Gad~iE~DV~lTkDG~lVv~HD~~l~Rtt~~~----------------   83 (287)
T 2oog_A           20 TNERFTTIAHRGASGYAPEHTFQAYDKSHNELKASYIEIDLQRTKDGHLVAMHDETVNRTTNGH----------------   83 (287)
T ss_dssp             TSCSSEEEETTTTTTTSCSSSHHHHHHHHHTSCCSEEEEEEEECTTCCEEECSSSBSTTTSSCC----------------
T ss_pred             CCCcceEEecCCCCCCCCchhHHHHHHHHHHcCCCEEEEEeeEccCCcEEEECCChhcccCCCC----------------
Confidence            4578999999999999999999999999 68999999999999999999999999999999987                


Q ss_pred             cccccceeeccCHHHHccCcccccccC-----CCcccCCCccccCHHHHHHHHHhcCCcceEeeeeCCcccccccccccC
Q 020686          119 VNTTGFFVVDFTLEELKTLRAKQRYSF-----RDQQYNGKFPIITFEEYISIALDAQRVVGIYPEMKNPVFINQHVKWAD  193 (322)
Q Consensus       119 ~~~~g~~i~~~t~~el~~l~~~~~~~~-----r~~~~~~~~~iptL~e~l~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~  193 (322)
                          | .|.++||+||++|+++.++..     +...+.+ .+||||+|+|+.+.   ..+.++||||.+..         
T Consensus        84 ----g-~v~d~T~~eL~~l~~~~~f~~~~p~~~~~~~~~-~~iPtL~evL~~~~---~~~~l~IEiK~~~~---------  145 (287)
T 2oog_A           84 ----G-KVEDYTLDELKQLDAGSWFNKKYPKYARASYKN-AKVPTLDEILERYG---PNANYYIETKSPDV---------  145 (287)
T ss_dssp             ----S-BGGGSCHHHHTTSCSSHHHHHHCGGGCCGGGTT-CCCCBHHHHHHHHC---TTSCEEEECCCTTT---------
T ss_pred             ----e-ehhhCcHHHHHhcCCCcccCccCccccccccCC-ccCCCHHHHHHhhC---cCceEEEEECCCCC---------
Confidence                4 799999999999999876531     1123444 59999999999884   35889999998542         


Q ss_pred             cchHHHHHHHHHHHcCCCCccccccccCCCEEEeccChhHHHHHhhcCCC-CeEEEEeccCccCCCCcccccccccHHHH
Q 020686          194 GKKFEDKFVDTLKKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTDS-PKIFLIDDVDILTEDTNQSYSEITSDAYL  272 (322)
Q Consensus       194 ~~~~~~~v~~~l~~~~~~~~~~~~~~~~~rv~i~Sf~~~~l~~~~~~~~~-~~v~l~~~~~~~~~~~~~~~~~~~~~~~l  272 (322)
                      ...+++.++++++++++....   ....++++|+||+++.|++++++.|. +.++++.....         .. .....+
T Consensus       146 ~~~~~~~v~~~l~~~~~~~~~---~~~~~~vii~SF~~~~l~~~~~~~p~~~~~~l~~~~~~---------~~-~~~~~~  212 (287)
T 2oog_A          146 YPGMEEQLLASLKKHHLLNNN---KLKNGHVMIQSFSDESLKKIHRQNKHVPLVKLVDKGEL---------QQ-FNDQRL  212 (287)
T ss_dssp             STTHHHHHHHHHHHTTCSSHH---HHHTTSEEEEESCHHHHHHHHHHCTTSCEEEEECTTTG---------GG-CCHHHH
T ss_pred             cchHHHHHHHHHHHcCCcccc---cCCCCCEEEEeCCHHHHHHHHHhCCCCcEEEEecCCcc---------cc-cCHHHH
Confidence            235789999999999872000   00014899999999999999998764 55566543211         00 112234


Q ss_pred             HHHHhhccccCCCcceeeecCCCCCCCChHHHHHHHHcCCeEEEEeCCCC
Q 020686          273 NYIKEYCVGIGPWKDTVVPVANNYSQTPTDLVARAHALDLQIHIGNTTTG  322 (322)
Q Consensus       273 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~ah~~Gl~V~vWTvn~~  322 (322)
                      +.+..++.++++          ++..+++++|+.+|++|+.|++||||+|
T Consensus       213 ~~~~~~~~~v~~----------~~~~~~~~~v~~~~~~G~~v~~wTvn~~  252 (287)
T 2oog_A          213 KEIRSYAIGLGP----------DYTDLTEQNTHHLKDLGFIVHPYTVNEK  252 (287)
T ss_dssp             HHHHTTCSEEEE----------BGGGCCHHHHHHHHHTTCEECCBCCCSH
T ss_pred             HHHhhhheEEcc----------cHhhcCHHHHHHHHHCCCeEEEEeCCCH
Confidence            455555544433          3456699999999999999999999985

>2otd_A Glycerophosphodiester phosphodiesterase; structural genomics PSI-2, protein structure initiative, midwest center for STR genomics, hydrolase; 2.60A {Shigella flexneri}

Probab=100.00  E-value=5.2e-45  Score=327.91  Aligned_cols=213  Identities=21%  Similarity=0.219  Sum_probs=167.9

Q ss_pred             CCCeEEeeCCCCCCCchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCCccccCCCCcccccccccccccCCccc
Q 020686           42 SRPYNLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVNT  121 (322)
Q Consensus        42 ~~p~iiaHRG~~~~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~~~~~g~~~  121 (322)
                      +.|.+|||||+++.+||||++||++|++.|+|+||+|||+||||++||+||.+++|+|++.                   
T Consensus         5 ~~~~iiaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDg~lVv~HD~~l~R~t~~~-------------------   65 (247)
T 2otd_A            5 PYPRIVAHRGGGKLAPENTLAAIDVGAKYGHKMIEFDAKLSKDGEIFLLHDDNLERTSNGW-------------------   65 (247)
T ss_dssp             CCCSEEETTTTTTSSCSSSHHHHHHHHHTTCSEEEEEEEECTTCCEEECSSSBSSTTSSCC-------------------
T ss_pred             CCCeEEECCCCCCCCCchhHHHHHHHHHcCCCEEEEEeeEccCCcEEEECCCCccccCCCC-------------------
Confidence            4589999999999999999999999999999999999999999999999999999999987                   


Q ss_pred             ccceeeccCHHHHccCcccccccCCCcccCCCccccCHHHHHHHHHhcCCcceEeeeeCCcccccccccccCcchHHHHH
Q 020686          122 TGFFVVDFTLEELKTLRAKQRYSFRDQQYNGKFPIITFEEYISIALDAQRVVGIYPEMKNPVFINQHVKWADGKKFEDKF  201 (322)
Q Consensus       122 ~g~~i~~~t~~el~~l~~~~~~~~r~~~~~~~~~iptL~e~l~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~~~~~v  201 (322)
                       | .|.++|++||++|+++.++.   +.|.+ ++||||+|+|+.+++.+  +.++||+|.+...        ...+++.+
T Consensus        66 -g-~v~~~t~~eL~~l~~g~~~~---~~~~~-~~iptL~evl~~~~~~~--~~l~iEiK~~~~~--------~~~~~~~v  129 (247)
T 2otd_A           66 -G-VAGELNWQDLLRVDAGSWYS---KAFKG-EPLPLLSQVAERCREHG--MMANIEIKPTTGT--------GPLTGKMV  129 (247)
T ss_dssp             -S-BGGGSCHHHHTTCCSSTTTC---GGGTT-CCCCBHHHHHHHHHHTT--CEEEEEECCCTTC--------HHHHHHHH
T ss_pred             -c-cHhhCcHHHHhhCCCCCccC---CCCCC-CcCCCHHHHHHHHHhcC--CEEEEEECCCCCc--------chHHHHHH
Confidence             4 79999999999999987652   34555 59999999999997543  8899999986421        12467899


Q ss_pred             HHHHHHcCCCCccccccccCCCEEEeccChhHHHHHhhcCCC-CeEEEEeccCccCCCCcccccccccHHHHHHHHhhcc
Q 020686          202 VDTLKKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTDS-PKIFLIDDVDILTEDTNQSYSEITSDAYLNYIKEYCV  280 (322)
Q Consensus       202 ~~~l~~~~~~~~~~~~~~~~~rv~i~Sf~~~~l~~~~~~~~~-~~v~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  280 (322)
                      +++++++....         .+++|+||+++.|.+++++.|. +..++.....       .        ...+.++..  
T Consensus       130 ~~~l~~~~~~~---------~~v~i~Sf~~~~l~~~~~~~p~~~~~~l~~~~~-------~--------~~~~~~~~~--  183 (247)
T 2otd_A          130 ALAARQLWAGM---------TPPLLSSFEIDALEAAQQAAPELPRGLLLDEWR-------D--------DWRELTARL--  183 (247)
T ss_dssp             HHHHHHHTTTS---------CCCEEEESCHHHHHHHHHHCTTSCEEEEESSCC-------T--------THHHHHHHH--
T ss_pred             HHHHHHHhcCc---------CCEEEEcCCHHHHHHHHHHCCCCCEEEEecCCc-------c--------cHHHHHHHc--
Confidence            99998873111         2799999999999999998765 4555543221       0        011222221  


Q ss_pred             ccCCCcceeeecCCCCCCCChHHHHHHHHcCCeEEEEeCCCC
Q 020686          281 GIGPWKDTVVPVANNYSQTPTDLVARAHALDLQIHIGNTTTG  322 (322)
Q Consensus       281 ~i~~~~~~~~~~~~~~~~~~~~~v~~ah~~Gl~V~vWTvn~~  322 (322)
                        ++  ..+.+   ++..+++++|+.+|++|++|++||||+|
T Consensus       184 --~~--~~i~~---~~~~~~~~~v~~~~~~G~~v~~wTvn~~  218 (247)
T 2otd_A          184 --GC--VSIHL---NHKLLDKARVMQLKDAGLRILVYTVNKP  218 (247)
T ss_dssp             --TC--SEEEE---EGGGCCHHHHHHHHHTTCEEEEECCCCH
T ss_pred             --CC--eEEec---ChHhCCHHHHHHHHHCCCEEEEEccCCH
Confidence              11  12222   3456789999999999999999999985

>3ks6_A Glycerophosphoryl diester phosphodiesterase; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.80A {Agrobacterium tumefaciens str} PDB: 3ks5_A*

Probab=100.00  E-value=2e-45  Score=331.23  Aligned_cols=214  Identities=21%  Similarity=0.250  Sum_probs=171.5

Q ss_pred             CCeEEeeCCCCCCCchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCCccccCCCCcccccccccccccCCcccc
Q 020686           43 RPYNLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVNTT  122 (322)
Q Consensus        43 ~p~iiaHRG~~~~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~~~~~g~~~~  122 (322)
                      .|.+|||||+++.+||||++||++|++.|+|+||+|||+||||++||+||.+++|+|++.                    
T Consensus         2 mp~iiaHRG~~~~~pENTl~af~~A~~~G~d~iE~DV~lT~Dg~~Vv~HD~~l~r~t~~~--------------------   61 (250)
T 3ks6_A            2 MTRIASHRGGTLEFGDSTPHGFTATAAMALEEVEFDLHPTADGAIVVHHDPTLDATTDMT--------------------   61 (250)
T ss_dssp             CCEEEEETTTHHHHCTTCHHHHHHHHTSSSSEEEEEEEECTTSCEEECSSSBSTTTBSCC--------------------
T ss_pred             CceEEECCCCCCCCCcchHHHHHHHHHcCCCEEEEEEeEccCCCEEEECCCccccccCCC--------------------
Confidence            489999999999999999999999999999999999999999999999999999999987                    


Q ss_pred             cceeeccCHHHHccCcccccccCCCcccCCCccccCHHHHHHHHHhcCCcceEeeeeCCcccccccccccCcchHHHHHH
Q 020686          123 GFFVVDFTLEELKTLRAKQRYSFRDQQYNGKFPIITFEEYISIALDAQRVVGIYPEMKNPVFINQHVKWADGKKFEDKFV  202 (322)
Q Consensus       123 g~~i~~~t~~el~~l~~~~~~~~r~~~~~~~~~iptL~e~l~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~~~~~v~  202 (322)
                      | .|.++||+||++++++.+         .++++|||+|+|+.+++.  .+.++||+|.+....      ....+++.++
T Consensus        62 g-~v~~~t~~el~~l~~~~~---------~~~~iptL~evl~~~~~~--~~~l~iEiK~~~~~~------~~~~~~~~v~  123 (250)
T 3ks6_A           62 G-AIVDMTLAKVKTATIRYG---------AGSHPMTLEELCALYVDS--HVNFRCEIKPGVDGL------PYEGFVALVI  123 (250)
T ss_dssp             S-BGGGSCHHHHHHCCBTTS---------TTCCCEEHHHHHHHHTTC--SCEEEEEECCCTTSC------CCTTHHHHHH
T ss_pred             C-eeecCcHHHHhcCCCCCC---------CCccCcCHHHHHHHHhcc--CcEEEEEeCCCcccC------cchHHHHHHH
Confidence            4 799999999999998753         236999999999998643  489999999854211      1246899999


Q ss_pred             HHHHHcCCCCccccccccCCCEEEeccChhHHHHHhhcCCCCeEEEEeccCccCCCCcccccccccHHHHHHHHhhcccc
Q 020686          203 DTLKKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTDSPKIFLIDDVDILTEDTNQSYSEITSDAYLNYIKEYCVGI  282 (322)
Q Consensus       203 ~~l~~~~~~~~~~~~~~~~~rv~i~Sf~~~~l~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i  282 (322)
                      ++++++++.+          +++++||+++.|+++|++.|...++++.....             ....+..+..++..+
T Consensus       124 ~~l~~~~~~~----------~v~~~SF~~~~l~~~~~~~p~~~~~l~~~~~~-------------~~~~~~~~~~~~~~~  180 (250)
T 3ks6_A          124 AGLERHSMLE----------RTTFSSFLLASMDELWKATTRPRLWLVSPSVL-------------QQLGPGAVIETAIAH  180 (250)
T ss_dssp             HHHHHTTCGG----------GEEEEESCHHHHHHHHHHCCSCEEEEECHHHH-------------HHHHHHHHHHHHHHT
T ss_pred             HHHHhcCCCC----------CEEEEeCCHHHHHHHHHHCCCCcEEEEecccc-------------cccchhHHHHHHHhc
Confidence            9999998764          89999999999999999988766665533100             000112222333333


Q ss_pred             CCCcceeeecCCCCCCCChHHHHHHHHcCCeEEEEeCCCC
Q 020686          283 GPWKDTVVPVANNYSQTPTDLVARAHALDLQIHIGNTTTG  322 (322)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~v~~ah~~Gl~V~vWTvn~~  322 (322)
                      ++.  .+.+   ++..+++++|+.+|++|++|++||||+|
T Consensus       181 ~~~--~~~~---~~~~~~~~~v~~~~~~G~~V~~WTvn~~  215 (250)
T 3ks6_A          181 SIH--EIGV---HIDTADAGLMAQVQAAGLDFGCWAAHTP  215 (250)
T ss_dssp             TCC--EEEE---EGGGCCHHHHHHHHHTTCEEEEECCCSH
T ss_pred             CCC--EEec---chhhCCHHHHHHHHHCCCEEEEEeCCCH
Confidence            332  2333   4567799999999999999999999985

>3ch0_A Glycerophosphodiester phosphodiesterase; YP_677622.1, glycerophosphoryl diester phosphodiesterase, ST genomics; HET: MSE CIT GOL; 1.50A {Cytophaga hutchinsonii atcc 33406}

Probab=100.00  E-value=8.1e-45  Score=331.07  Aligned_cols=235  Identities=20%  Similarity=0.264  Sum_probs=173.8

Q ss_pred             CCCCeEEeeCCCCCCCchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCCcc----ccCCCCccccccccccccc
Q 020686           41 TSRPYNLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDD----TTNIADHKEFADRKRTCMV  116 (322)
Q Consensus        41 ~~~p~iiaHRG~~~~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l~r----~t~~~~~~~~~~~~~~~~~  116 (322)
                      +.++.+|||||+++.+||||++||++|++.|+|+||+|||+||||++||+||.+++|    +|++...+           
T Consensus         6 ~~~~~iiaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDg~lVv~HD~~l~r~~~~tt~g~~~~-----------   74 (272)
T 3ch0_A            6 PASFDIQGHRGCRGLLPENTIAAFTKALLLGVTTLEFDLVISKDNRVVVSHDTFFHHEITMMVDGEDVT-----------   74 (272)
T ss_dssp             CTTCEEEETTTTTTTSSTTSHHHHHHHHHHTCSEEEEEEEECTTCCEEECSSSBCCTTTCCEETTEECC-----------
T ss_pred             cccccEEecCCCCCCCCcccHHHHHHHHHcCCCEEEEeeeEcCCCcEEEeCCCcccccccccCCCcccc-----------
Confidence            346789999999999999999999999999999999999999999999999999999    44443100           


Q ss_pred             CCcccccceeeccCHHHHccCccccccc--CCCcccCCCccccCHHHHHHHHHhcCCcceEeeeeCCcccccccccccCc
Q 020686          117 QGVNTTGFFVVDFTLEELKTLRAKQRYS--FRDQQYNGKFPIITFEEYISIALDAQRVVGIYPEMKNPVFINQHVKWADG  194 (322)
Q Consensus       117 ~g~~~~g~~i~~~t~~el~~l~~~~~~~--~r~~~~~~~~~iptL~e~l~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~  194 (322)
                       +....++.|.++||+||++|+++.++.  |+.+...+ .+||||+|+|+.++.++..+.++||+|.+..... ...+..
T Consensus        75 -~~~~~~~~v~d~t~~eL~~l~~~~~~~~~~~~~~~~~-~~iptL~evl~~~~~~~~~~~l~iEiK~~~~~~~-~~~~~~  151 (272)
T 3ch0_A           75 -EANEKNFNLYAMNYADIKEIDVGMKTHPRFKSQKKVP-AVKPLFRELIETAEKLSAKIQYNGEIKSTVEGDN-IDHPNI  151 (272)
T ss_dssp             -TTTGGGSBGGGSCHHHHTTSCCSSSCCTTCTTSCCCC-CCCCBHHHHHHHHHHHCSSCEEEEEECCCGGGBT-TTBCCH
T ss_pred             -cccccCceeecCCHHHHHhcCCCCccCccCcccccCC-CCCcCHHHHHHHHHHhCCCceEEEEECCCcCccc-ccCccH
Confidence             001113479999999999999988753  22221112 3899999999999876445899999998753210 001122


Q ss_pred             chHHHHHHHHHHHcCCCCccccccccCCCEEEeccChhHHHHHhhcCCCC-eEEEEeccCccCCCCcccccccccHHHHH
Q 020686          195 KKFEDKFVDTLKKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTDSP-KIFLIDDVDILTEDTNQSYSEITSDAYLN  273 (322)
Q Consensus       195 ~~~~~~v~~~l~~~~~~~~~~~~~~~~~rv~i~Sf~~~~l~~~~~~~~~~-~v~l~~~~~~~~~~~~~~~~~~~~~~~l~  273 (322)
                      ..+++.++++++++++.+          +++|+||+++.|++++++.|.. ..++.....        .        ..+
T Consensus       152 ~~~~~~v~~~l~~~~~~~----------~v~i~Sf~~~~l~~~~~~~p~~~~~~l~~~~~--------~--------~~~  205 (272)
T 3ch0_A          152 ALFCDLVVAEIKKAHITD----------RFTLQSFDVRALEYMHSQYPDIKLSYLVETKG--------T--------LKK  205 (272)
T ss_dssp             HHHHHHHHHHHHHTTCGG----------GEEEEESCHHHHHHHHHHCTTSEEEEEECSSC--------C--------HHH
T ss_pred             HHHHHHHHHHHHHcCCCC----------cEEEEeCCHHHHHHHHHHCCCCcEEEEecCCC--------C--------HHH
Confidence            458899999999998764          8999999999999999987754 445543210        0        111


Q ss_pred             HHHhhccccCCCcceeeecCCCCCCCChHHHHHHHHcCCeEEEEeCCCC
Q 020686          274 YIKEYCVGIGPWKDTVVPVANNYSQTPTDLVARAHALDLQIHIGNTTTG  322 (322)
Q Consensus       274 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~ah~~Gl~V~vWTvn~~  322 (322)
                      .++    .++.....+.+   ++..+++++|+.+|++|+.|++||||+|
T Consensus       206 ~~~----~~~~~~~~i~~---~~~~~~~~~v~~~~~~Gl~v~~wTvn~~  247 (272)
T 3ch0_A          206 QLE----KLSFTPAVYSP---DVTLVSKKDIDAAHKLGMRVIPWTVNTK  247 (272)
T ss_dssp             HHT----TSSSCCSEEEE---BGGGCCHHHHHHHHHTTCEECCBCCCSH
T ss_pred             HHH----HcCCCCcEEcc---chhhcCHHHHHHHHHcCCEEEEeccCCH
Confidence            121    22221233443   4566799999999999999999999985

>3l12_A Putative glycerophosphoryl diester phosphodiester; struct genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.60A {Silicibacter pomeroyi}

Probab=100.00  E-value=4e-44  Score=332.87  Aligned_cols=247  Identities=19%  Similarity=0.276  Sum_probs=174.7

Q ss_pred             CCCCeEEeeCCCCCCCchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCCccccCCCCcccccccccccccCCcc
Q 020686           41 TSRPYNLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVN  120 (322)
Q Consensus        41 ~~~p~iiaHRG~~~~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~~~~~g~~  120 (322)
                      ..++.+|||||+++.+||||++||++|++.|+|+||+|||+||||++||+||.+|+|+|+.+.             +|..
T Consensus        15 ~~~~~iiaHRG~~~~~PENTl~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l~rtt~~~~-------------~G~~   81 (313)
T 3l12_A           15 PSVVRVIGHRGARGVMPENTLEGFAFTLAAGVRALEFDVVMTADGVPVVTHNHHLANAMTRDG-------------QGHW   81 (313)
T ss_dssp             TTBCEEEEETTTTTTSCTTCHHHHHHHHHTTCCEEEEEEEECTTSCEEECSSSBCCTTTCBCT-------------TSCB
T ss_pred             CCCeEEEEcCCCCCCCCccHHHHHHHHHHcCCCEEEEEEEECCCCCEEEECCchhcccccccC-------------CCcc
Confidence            456889999999999999999999999999999999999999999999999999999965331             1211


Q ss_pred             cc--cceeeccCHHHHccCcccccc-------cCCCcccCCCccccCHHHHHHHHHhcC-CcceEeeeeCCccccccccc
Q 020686          121 TT--GFFVVDFTLEELKTLRAKQRY-------SFRDQQYNGKFPIITFEEYISIALDAQ-RVVGIYPEMKNPVFINQHVK  190 (322)
Q Consensus       121 ~~--g~~i~~~t~~el~~l~~~~~~-------~~r~~~~~~~~~iptL~e~l~~~~~~~-~~~~l~iEiK~~~~~~~~~~  190 (322)
                      .+  ++.|.++||+||++|+++.+.       .|+.+....+++||||+|+|+.++..+ +.+.++||||.+......  
T Consensus        82 ~~~~~~~v~~~t~~eL~~l~~~~~~~~~~~~~~~~~~~~~~g~~iptL~evl~~~~~~~~~~~~l~IEiK~~~~~~~~--  159 (313)
T 3l12_A           82 LTGAERQVAEMTYAEIRALDVGGLDGRTVYGRRFPDQAFLTGIHVPRLGELLDLCAGYGDQAPYLLLELKSDPALMHD--  159 (313)
T ss_dssp             CCSSCCBGGGSCHHHHHTSBCSSCCTTSHHHHHSTTSCCCSSCCCCBHHHHHHHHHTTGGGCCEEEEEECCCGGGTTC--
T ss_pred             cCCCCcchhcCcHHHHhhCCCCCccccccccccCccccccCCCcCCCHHHHHHHHHhcCCCCceEEEEEccCCccccc--
Confidence            11  237999999999999998621       122222112369999999999998532 258999999987532110  


Q ss_pred             ccCcchHHHHHHHHHHHcCCCCccccccccCCCEEEeccChhHHHHHhhcCCC-CeEEEEeccCccCC--C-----Cccc
Q 020686          191 WADGKKFEDKFVDTLKKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTDS-PKIFLIDDVDILTE--D-----TNQS  262 (322)
Q Consensus       191 ~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~rv~i~Sf~~~~l~~~~~~~~~-~~v~l~~~~~~~~~--~-----~~~~  262 (322)
                      .+....+++.++++++++++.+          +++|+||+++.|++++++.|. +..++.........  .     ....
T Consensus       160 ~~~~~~~~~~v~~~l~~~~~~~----------~v~i~SF~~~~l~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~  229 (313)
T 3l12_A          160 HAARAEMVAAVLADVRRYRMEP----------RTVMHSFDWALLGECRRQAPDLPTSYLSQLPENADDPGEDSAKPVGPD  229 (313)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCGG----------GEEEEESCHHHHHHHHHHCTTSCEEEEECCCC-------------CCC
T ss_pred             cccHHHHHHHHHHHHHHcCCCC----------CEEEEcCCHHHHHHHHHHCCCCcEEEEecccccccccccccccccccc
Confidence            0012468999999999998864          899999999999999998775 55555543320000  0     0000


Q ss_pred             ccccccHHHHHHHHhhccccCCCcceeeecCCCCCCCChHHHHHHHHcCCeEEEEeCCCC
Q 020686          263 YSEITSDAYLNYIKEYCVGIGPWKDTVVPVANNYSQTPTDLVARAHALDLQIHIGNTTTG  322 (322)
Q Consensus       263 ~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~ah~~Gl~V~vWTvn~~  322 (322)
                      |..... ...+.++..    ++  ..+.+   ++..+++++|+.+|++|++|++||||+|
T Consensus       230 ~~~~~~-~l~~~~~~~----~~--~~~~~---~~~~~~~~~v~~~~~~Gl~V~~WTVn~~  279 (313)
T 3l12_A          230 YDRMTE-SLPQAVASA----GG--QLWCP---YFLDVTPELVAEAHDLGLIVLTWTVNEP  279 (313)
T ss_dssp             TTTCCS-CHHHHHHHH----TC--SEEEE---BGGGCCHHHHHHHHHTTCEEEEBCCCSH
T ss_pred             chhccc-cHHHHHHHh----CC--cEEec---chhcCCHHHHHHHHHCCCEEEEEcCCCH
Confidence            110000 011222221    11  22333   4567799999999999999999999985

>2o55_A Putative glycerophosphodiester phosphodiesterase; beta barrel, structural genomics, protein structure initiati 2; 2.81A {Galdieria sulphuraria}

Probab=100.00  E-value=3.2e-43  Score=318.19  Aligned_cols=214  Identities=20%  Similarity=0.252  Sum_probs=168.8

Q ss_pred             CCCCeEEeeCCCC--CCCchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCC---CCccccCCCCcccccccccccc
Q 020686           41 TSRPYNLAHRGSN--GEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDV---FLDDTTNIADHKEFADRKRTCM  115 (322)
Q Consensus        41 ~~~p~iiaHRG~~--~~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~---~l~r~t~~~~~~~~~~~~~~~~  115 (322)
                      ..+|.+|||||++  +.+||||++||++|++.|+|+||+|||+||||++||+||.   +++|+|++.             
T Consensus         4 ~~~~~iiaHRG~~~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDg~lVv~HD~~~~~l~Rtt~~~-------------   70 (258)
T 2o55_A            4 VIIPKIVGHRGVGKEGLAPENTLRSFVLCMERNIPYIETDLRVCKTGEIVLFHGTPEGTIPFYKDGT-------------   70 (258)
T ss_dssp             CCCCEEEEETTTTTSTTSCTTCHHHHHHHHHTTCCEEEEEEEECTTSCEEECCCSTTSBCTTSTTTT-------------
T ss_pred             ccCceEEECCCCCCCCCCCccHHHHHHHHHHcCcCEEEEEEEEecCCeEEEEeCCCCccceeeCCCC-------------
Confidence            4678999999999  9999999999999999999999999999999999999999   999999987             


Q ss_pred             cCCcccccceeeccCHHHHccCcccccccCCCcccCCCccccCHHHHHHHHHhcCCcceEeeeeCCcccccccccccCcc
Q 020686          116 VQGVNTTGFFVVDFTLEELKTLRAKQRYSFRDQQYNGKFPIITFEEYISIALDAQRVVGIYPEMKNPVFINQHVKWADGK  195 (322)
Q Consensus       116 ~~g~~~~g~~i~~~t~~el~~l~~~~~~~~r~~~~~~~~~iptL~e~l~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~  195 (322)
                             | .|.++|++||++|+++           .++++|||+|+|+.++.++..+.++||+|.+....      ...
T Consensus        71 -------g-~v~~~t~~eL~~l~~~-----------~~~~iptL~evl~~~~~~~~~~~l~iEiK~~~~~~------~~~  125 (258)
T 2o55_A           71 -------S-RIGDLSLEELKRLDVG-----------GGHTIPSLEELFVAIEEQKFNLKLNLELKGEEWKR------KES  125 (258)
T ss_dssp             -------C-BGGGSCHHHHTTCBSS-----------SSCBCCBHHHHHHHHHHSCSCCEEEEEECCSSSSS------TTS
T ss_pred             -------e-ehhhCcHHHHhhcCCC-----------CCCccCCHHHHHHHhhhhcCceEEEEEEccCCccc------cch
Confidence                   4 7999999999999986           23699999999999987533589999999864210      124


Q ss_pred             hHHHHHHHHHHHcCCCCccccccccCCCEEEeccChhHHHHHhhcCCCCeE-EEEeccCccCCCCcccccccccHHHHHH
Q 020686          196 KFEDKFVDTLKKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTDSPKI-FLIDDVDILTEDTNQSYSEITSDAYLNY  274 (322)
Q Consensus       196 ~~~~~v~~~l~~~~~~~~~~~~~~~~~rv~i~Sf~~~~l~~~~~~~~~~~v-~l~~~~~~~~~~~~~~~~~~~~~~~l~~  274 (322)
                      .+++.++++++++++.+          +++|+||++..|+++|++.|...+ ++......  .+ .  +      ..+..
T Consensus       126 ~~~~~v~~~l~~~~~~~----------~v~i~Sf~~~~l~~~~~~~p~~~~~~l~~~~~~--~~-~--~------~~~~~  184 (258)
T 2o55_A          126 GDHQRLLLLVEKYHMQE----------RVDYCSFHHEALAHLKALCPDVKITYLFNYMGQ--PT-P--L------DFVEQ  184 (258)
T ss_dssp             SHHHHHHHHHHTTTCGG----------GEEEEESSHHHHHHHHHHCTTCEEEEECCTTSC--CC-C--T------THHHH
T ss_pred             HHHHHHHHHHHHcCCCC----------CEEEEeCCHHHHHHHHHHCCCCcEEEEEeCCCC--CC-H--H------HHHHH
Confidence            68899999999998764          899999999999999998775544 44412110  00 0  0      01111


Q ss_pred             HHhhccccCCCcceeeecCCCCCCCChHHHHHHHHcCCeEEEEeC----CCC
Q 020686          275 IKEYCVGIGPWKDTVVPVANNYSQTPTDLVARAHALDLQIHIGNT----TTG  322 (322)
Q Consensus       275 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~ah~~Gl~V~vWTv----n~~  322 (322)
                      ++.    .++  ..+.+   ++..+++++|+.+|++|++|++|||    |+|
T Consensus       185 ~~~----~~~--~~v~~---~~~~~~~~~v~~~~~~G~~v~~wTv~~~~n~~  227 (258)
T 2o55_A          185 ACY----GDA--NGVSM---LFHYLTKEQVCTAHEKGLSVTVWMPWIFDDSE  227 (258)
T ss_dssp             HHH----TTC--SEEEE---EGGGCCHHHHHHHHHTTCEEEEECCTTCCCCH
T ss_pred             HHh----cCC--eEEec---ChhhcCHHHHHHHHHCCCEEEEeeCCCCCCCH
Confidence            221    122  12222   3556799999999999999999999    874

>1zcc_A Glycerophosphodiester phosphodiesterase; NYSGXRC, agrobacterium tumefaciens STR. C58, structural genomics; 2.50A {Agrobacterium tumefaciens str} SCOP: c.1.18.3

Probab=100.00  E-value=9.2e-45  Score=326.53  Aligned_cols=203  Identities=22%  Similarity=0.146  Sum_probs=163.6

Q ss_pred             CeEEeeCCCCCCCchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCCccccCCCCcccccccccccccCCccccc
Q 020686           44 PYNLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVNTTG  123 (322)
Q Consensus        44 p~iiaHRG~~~~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~~~~~g~~~~g  123 (322)
                      |.+|||||+++.+||||++||++|++.|+|+||+|||+||||++||+||.+++|+|++.                    |
T Consensus         2 ~~iiaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDg~lVv~HD~~l~Rtt~~~--------------------g   61 (248)
T 1zcc_A            2 TKIVSHRGANRFAPENTFAAADLALQQGADYIELDVRESADGVLYVIHDETLDRTTNGT--------------------G   61 (248)
T ss_dssp             CEEEETTTTTTTSCSSSHHHHHHHHHTTCSEEEEEEEECTTCCEEECSSSBTTTTSSCC--------------------S
T ss_pred             CeEEECCCCCCCCCchHHHHHHHHHHcCCCEEEEEeeEcCCCCEEEECCCccccccCCC--------------------c
Confidence            68999999999999999999999999999999999999999999999999999999987                    4


Q ss_pred             ceeeccCHHHHccCcccccccCCCcccCCCccccCHHHHHHHHHhcCCcceEeeeeCCcccccccccccCcchHHHHHHH
Q 020686          124 FFVVDFTLEELKTLRAKQRYSFRDQQYNGKFPIITFEEYISIALDAQRVVGIYPEMKNPVFINQHVKWADGKKFEDKFVD  203 (322)
Q Consensus       124 ~~i~~~t~~el~~l~~~~~~~~r~~~~~~~~~iptL~e~l~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~~~~~v~~  203 (322)
                       .|.++|++||++|+++.+           +++|||+|+|+.++.+  .+.++||+|.+...        ...+++.+++
T Consensus        62 -~v~~~t~~eL~~l~~g~~-----------~~iptL~evl~~~~~~--~~~l~iEiK~~~~~--------~~~~~~~v~~  119 (248)
T 1zcc_A           62 -PVGHMLSSEIDTLDAGGW-----------FDDRFKGAIVPRLDAY--LEHLRGRAGVYIEL--------KYCDPAKVAA  119 (248)
T ss_dssp             -BSTTSCHHHHTTSCSSTT-----------TCGGGTTCCCCBHHHH--HHHHTTTCEEEEEE--------EESCHHHHHH
T ss_pred             -chhhCCHHHHHhCCCCCC-----------CCCCCHHHHHHHHHhc--CcEEEEEeCCCCCc--------ccHHHHHHHH
Confidence             699999999999998742           4899999999998753  37899999975421        1127899999


Q ss_pred             HHHHcCCCCccccccccCCCEEEeccChhHHHHHhhcCCCCeEEEEeccCccCCCCcccccccccHHHHHHHHhhccccC
Q 020686          204 TLKKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTDSPKIFLIDDVDILTEDTNQSYSEITSDAYLNYIKEYCVGIG  283 (322)
Q Consensus       204 ~l~~~~~~~~~~~~~~~~~rv~i~Sf~~~~l~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~  283 (322)
                      +++++++.+          +++|+||++..++++|++.|...+.++.....   .            ..+.++.    .+
T Consensus       120 ~l~~~~~~~----------~v~i~Sf~~~~l~~~~~~~p~~~~~~l~~~~~---~------------~~~~~~~----~~  170 (248)
T 1zcc_A          120 LVRHLGMVR----------DTFYFSFSEEMRQGLQSIAPEFRRMMTLDIAK---S------------PSLVGAV----HH  170 (248)
T ss_dssp             HHHHHTCST----------TEEEECSCHHHHHHHHHHCTTSEEEEEHHHHS---S------------THHHHHT----TC
T ss_pred             HHHHhCCCC----------CEEEEECCHHHHHHHHHHCCCCcEEEEecCCc---c------------HHHHHHH----cC
Confidence            999998764          89999999999999999877655444322110   0            0122221    22


Q ss_pred             CCcceeeecCCCCCCC-ChHHHHHHHHcCCeEEEEeCCCC
Q 020686          284 PWKDTVVPVANNYSQT-PTDLVARAHALDLQIHIGNTTTG  322 (322)
Q Consensus       284 ~~~~~~~~~~~~~~~~-~~~~v~~ah~~Gl~V~vWTvn~~  322 (322)
                      +  ..+.+   ++..+ ++++|+.+|++|++|++||||+|
T Consensus       171 ~--~~i~~---~~~~~~~~~~v~~~~~~G~~v~~wTvn~~  205 (248)
T 1zcc_A          171 A--SIIEI---TPAQMRRPGIIEASRKAGLEIMVYYGGDD  205 (248)
T ss_dssp             C--SEEEE---CHHHHHSHHHHHHHHHHTCEEEEECCCCC
T ss_pred             C--CEEEe---cHHHhCCHHHHHHHHHCCCEEEEECCCCH
Confidence            2  12322   45566 89999999999999999999986

>3no3_A Glycerophosphodiester phosphodiesterase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.89A {Parabacteroides distasonis} SCOP: c.1.18.0

Probab=100.00  E-value=1.6e-42  Score=310.03  Aligned_cols=202  Identities=19%  Similarity=0.169  Sum_probs=159.4

Q ss_pred             CCCeEEeeCCC--CCCCchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCCccccCCCCcccccccccccccCCc
Q 020686           42 SRPYNLAHRGS--NGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGV  119 (322)
Q Consensus        42 ~~p~iiaHRG~--~~~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~~~~~g~  119 (322)
                      .+|.+|||||+  ++.+||||++||++|++.|+|+||+|||+||||++||+||.+++|   +                  
T Consensus         3 ~~~~iiaHRG~~~~~~~pENTl~Af~~A~~~G~d~iE~DV~lT~Dg~~Vv~HD~~l~~---~------------------   61 (238)
T 3no3_A            3 DNTKVIAHRGYWKTEGSAQNSIRSLERASEIGAYGSEFDVHLTADNVLVVYHDNDIQG---K------------------   61 (238)
T ss_dssp             CCCEEEETTSSCSSTTCCTTSHHHHHHHHHTTCSEEEEEEEECTTSCEEECSSSEETT---E------------------
T ss_pred             CCCeEEeCCCCCCCCCCCccHHHHHHHHHHcCCCEEEEEeeEccCCcEEEECCCCCCC---C------------------
Confidence            57899999999  689999999999999999999999999999999999999999985   1                  


Q ss_pred             ccccceeeccCHHHHccCcccccccCCCcccCCCccccCHHHHHHHHHhcCCcceEeeeeCCcccccccccccCcchHHH
Q 020686          120 NTTGFFVVDFTLEELKTLRAKQRYSFRDQQYNGKFPIITFEEYISIALDAQRVVGIYPEMKNPVFINQHVKWADGKKFED  199 (322)
Q Consensus       120 ~~~g~~i~~~t~~el~~l~~~~~~~~r~~~~~~~~~iptL~e~l~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~~~~  199 (322)
                           .|.++||+||++++++.           ++++|||+|+|+.+++.+ .+.++||+|.+....      ....+++
T Consensus        62 -----~v~~~t~~el~~l~~~~-----------~~~iptL~evl~~~~~~~-~~~l~iEiK~~~~~~------~~~~~~~  118 (238)
T 3no3_A           62 -----HIQSCTYDELKDLQLSN-----------GEKLPTLEQYLKRAKKLK-NIRLIFELKSHDTPE------RNRDAAR  118 (238)
T ss_dssp             -----EGGGSCHHHHTTCBCTT-----------SCBCCBHHHHHHHHHHCT-TCEEEEEECCCSSHH------HHHHHHH
T ss_pred             -----ChHhCCHHHHhhCCCCC-----------CCcCCcHHHHHHHHhhcC-CceEEEEeCCCCCcc------hhHHHHH
Confidence                 59999999999999862           359999999999998752 489999999865211      1236889


Q ss_pred             HHHHHHHHcCCCCccccccccCCCEEEeccChhHHHHHhhcCCCCeEEEEeccCccCCCCcccccccccHHHHHHHHhh-
Q 020686          200 KFVDTLKKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTDSPKIFLIDDVDILTEDTNQSYSEITSDAYLNYIKEY-  278 (322)
Q Consensus       200 ~v~~~l~~~~~~~~~~~~~~~~~rv~i~Sf~~~~l~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-  278 (322)
                      .++++++++++..          +++++||++..|++++++.|...+.++....              ..   ..++.. 
T Consensus       119 ~v~~~l~~~~~~~----------~v~~~Sf~~~~l~~~~~~~p~~~~~~l~~~~--------------~~---~~~~~~~  171 (238)
T 3no3_A          119 LSVQMVKRMKLAK----------RTDYISFNMDACKEFIRLCPKSEVSYLNGEL--------------SP---MELKELG  171 (238)
T ss_dssp             HHHHHHHHTTCGG----------GEEEEESCHHHHHHHHHHCTTSCEEECSSCS--------------CH---HHHHHTT
T ss_pred             HHHHHHHHcCCcC----------CEEEEECCHHHHHHHHHHCCCCeEEEEeCCC--------------CH---HHHHHCC
Confidence            9999999998764          8999999999999999998765554432210              01   122221 


Q ss_pred             ccccCCCcceeeecCCCCCCCChHHHHHHHHcCCeEEEEeCCCC
Q 020686          279 CVGIGPWKDTVVPVANNYSQTPTDLVARAHALDLQIHIGNTTTG  322 (322)
Q Consensus       279 ~~~i~~~~~~~~~~~~~~~~~~~~~v~~ah~~Gl~V~vWTvn~~  322 (322)
                      +.++.+.        ......++++|+.+|++|++|++||||+|
T Consensus       172 ~~~~~~~--------~~~~~~~~~~v~~~~~~G~~v~~WTVn~~  207 (238)
T 3no3_A          172 FTGLDYH--------YKVLQSHPDWVKDCKVLGMTSNVWTVDDP  207 (238)
T ss_dssp             CCEEEEE--------HHHHHHSTTHHHHHHHTTCEEEEECCCSH
T ss_pred             CceEecc--------HHhhhCCHHHHHHHHHCCCEEEEECCCCH
Confidence            1122111        01123478999999999999999999985

>3mz2_A Glycerophosphoryl diester phosphodiesterase; structural genomics, joint center for structural genomics; HET: MSE PE4; 1.55A {Parabacteroides distasonis}

Probab=100.00  E-value=1.4e-41  Score=312.26  Aligned_cols=208  Identities=21%  Similarity=0.282  Sum_probs=164.2

Q ss_pred             CCCCCeEEeeCCCCC-CCchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCCccccCCCCcccccccccccccCC
Q 020686           40 QTSRPYNLAHRGSNG-EFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQG  118 (322)
Q Consensus        40 ~~~~p~iiaHRG~~~-~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~~~~~g  118 (322)
                      ...+|.+|||||+++ .+||||++||++|++.|+|+||+|||+||||++||+||.+++|+|++.                
T Consensus        28 ~~~~~~iiaHRG~~~~~~pENTl~af~~A~~~g~d~iE~Dv~~TkDg~~Vv~HD~~l~rtt~~~----------------   91 (292)
T 3mz2_A           28 DDRIPLISGHRGGRGKGYPENSMETFENTLSYTPATFEIDPRLTKDSVIVLFHDDTLERTSNGT----------------   91 (292)
T ss_dssp             TTCCCEEEEGGGCCBTTBCTTCHHHHHHHHHHCCCEEEECEEECTTCCEEECCSSSSTTTBSCC----------------
T ss_pred             CCCCCEEEECCCCCCCCCCccHHHHHHHHHHcCCCEEEEEEeECCCCcEEEECCchhcccCCCC----------------
Confidence            457899999999975 799999999999999999999999999999999999999999999987                


Q ss_pred             cccccceeeccCHHHHccCcccccccCCCcccCCCccccCHHHHHHHHHhcCCcceEeeeeCCcccccccccccCcchHH
Q 020686          119 VNTTGFFVVDFTLEELKTLRAKQRYSFRDQQYNGKFPIITFEEYISIALDAQRVVGIYPEMKNPVFINQHVKWADGKKFE  198 (322)
Q Consensus       119 ~~~~g~~i~~~t~~el~~l~~~~~~~~r~~~~~~~~~iptL~e~l~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~~~  198 (322)
                          | .|.++|++||++++++.+.    ..+.+ .+||||+|+|+.++.   .+.++||+|...              .
T Consensus        92 ----g-~v~~~t~~el~~l~~~~~~----~~~~~-~~iptL~evl~~~~~---~~~l~iE~K~~~--------------~  144 (292)
T 3mz2_A           92 ----G-KVSDYTWEELQNFRLKDPE----GNITN-YRIPTLEEAIRWARG---KTILILDKKDVP--------------M  144 (292)
T ss_dssp             ----S-CGGGSCHHHHTTSCBBCTT----CCBCS-CCCCBHHHHHHHHTT---TCCEEECCSSSC--------------H
T ss_pred             ----C-chhhCcHHHHhcCCCCCCC----CccCC-cCCCCHHHHHHHhCC---CcEEEEEECCCc--------------H
Confidence                4 7999999999999987542    12333 599999999999853   378999999642              3


Q ss_pred             HHHHHHHHHcCCCCccccccccCCCEEEeccChhHHHHHhhcCCCCeEEEEeccCccCCCCcccccccccHHHHHHHHhh
Q 020686          199 DKFVDTLKKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTDSPKIFLIDDVDILTEDTNQSYSEITSDAYLNYIKEY  278 (322)
Q Consensus       199 ~~v~~~l~~~~~~~~~~~~~~~~~rv~i~Sf~~~~l~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  278 (322)
                      +.++++++++++.+          +++++||+.+.+++++++.|...+.++...                ...++.+...
T Consensus       145 ~~v~~~l~~~~~~~----------~vii~Sf~~~~l~~~~~~~p~~~~~~l~~~----------------~~~l~~~~~~  198 (292)
T 3mz2_A          145 ERTAQLITDMQAEP----------YVMITVHDGASARFFYEKNPNFMFEAFVKT----------------KEAVQDYEDN  198 (292)
T ss_dssp             HHHHHHHHHTTCTT----------TEEEEESSHHHHHHHHHHCTTCCEEEECCS----------------HHHHHHHHHT
T ss_pred             HHHHHHHHHcCCCC----------CEEEEECCHHHHHHHHHHCCCCeEEEEeCC----------------HHHHHHHHHh
Confidence            78899999999874          899999999999999999776544433211                1122332221


Q ss_pred             ccccCCCc---ceeeecCCCCCCCChHHHHHHHHcCCeEEEEeCCCC
Q 020686          279 CVGIGPWK---DTVVPVANNYSQTPTDLVARAHALDLQIHIGNTTTG  322 (322)
Q Consensus       279 ~~~i~~~~---~~~~~~~~~~~~~~~~~v~~ah~~Gl~V~vWTvn~~  322 (322)
                        ++ ++.   ..+.   ..+...++++|+.+|++|++|++||||++
T Consensus       199 --g~-~~~~~~~~~~---~~~~~~~~~~V~~ah~~G~~V~vWTv~t~  239 (292)
T 3mz2_A          199 --GI-PWSHIMAYVG---PKITPEVREVIDMLHERGVMCMISTAPSD  239 (292)
T ss_dssp             --TC-CGGGEEEEEE---SSCCHHHHHHHHHHHHTTBCEEEECTTTG
T ss_pred             --CC-Chhheeeeec---ccccccCHHHHHHHHHCCCEEEEEeCCCc
Confidence              11 111   1121   24555689999999999999999999874

>1o1z_A GDPD, glycerophosphodiester phosphodiesterase; TM1621, glycerophosphodiester phosphodiesterase (GDPD), STRU genomics, JCSG, PSI; 1.60A {Thermotoga maritima} SCOP: c.1.18.3

Probab=100.00  E-value=3e-42  Score=307.54  Aligned_cols=197  Identities=24%  Similarity=0.309  Sum_probs=153.5

Q ss_pred             CCCCCCCeEEeeCCCCCCCchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCCccccCCCCcccccccccccccC
Q 020686           38 PLQTSRPYNLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQ  117 (322)
Q Consensus        38 ~~~~~~p~iiaHRG~~~~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~~~~~  117 (322)
                      .-..+..++|||||+++.+||||++||++|++.|+|+||+|||+||||++||+||.+++|+|++.               
T Consensus         7 ~~~~~~~~iiaHRG~~~~~PENTl~Af~~A~~~Gad~iE~DV~lTkDG~lVv~HD~~l~Rtt~~~---------------   71 (234)
T 1o1z_A            7 HHHHHHVIVLGHRGYSAKYLENTLEAFMKAIEAGANGVELDVRLSKDGKVVVSHDEDLKRLFGLD---------------   71 (234)
T ss_dssp             --CCCCCEEEEETTTTTTSCTTSHHHHHHHHHTTCSEEEEEEEECTTSCEEECSSSEEHHHHCEE---------------
T ss_pred             ccccceEEEEEcCCCCCCCCCchHHHHHHHHHcCCCEEEEEeeEecCCCEEEEcCCcHHhcCCcC---------------
Confidence            44567789999999999999999999999999999999999999999999999999999999976               


Q ss_pred             CcccccceeeccCHHHHccCcccccccCCCcccCCCccccCHHHHHHHHHhcCCcceEeeeeCCcccccccccccCcchH
Q 020686          118 GVNTTGFFVVDFTLEELKTLRAKQRYSFRDQQYNGKFPIITFEEYISIALDAQRVVGIYPEMKNPVFINQHVKWADGKKF  197 (322)
Q Consensus       118 g~~~~g~~i~~~t~~el~~l~~~~~~~~r~~~~~~~~~iptL~e~l~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~~  197 (322)
                           | .|.++||+||++|+              ++++|||+|+|+.++.   .+.++||+|.+             .+
T Consensus        72 -----g-~v~d~T~~eL~~l~--------------~~~iptL~evL~~~~~---~~~l~iEiK~~-------------~~  115 (234)
T 1o1z_A           72 -----V-KIRDATVSELKELT--------------DGKITTLKEVFENVSD---DKIINIEIKER-------------EA  115 (234)
T ss_dssp             -----E-EGGGSCHHHHHHHT--------------TTCCCBHHHHHHHSCT---TSEEEEEECCG-------------GG
T ss_pred             -----c-CcccCcHHHHhcCC--------------CCCCCCHHHHHHhccc---CCeEEEEeCCc-------------cH
Confidence                 4 79999999999987              1489999999999853   37899999964             35


Q ss_pred             HHHHHHHHHHcCCCCccccccccCCCEEEeccChhHHHHHhhcCCCC-eEEEEeccCccCCCCcccccccccHHHHHHHH
Q 020686          198 EDKFVDTLKKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTDSP-KIFLIDDVDILTEDTNQSYSEITSDAYLNYIK  276 (322)
Q Consensus       198 ~~~v~~~l~~~~~~~~~~~~~~~~~rv~i~Sf~~~~l~~~~~~~~~~-~v~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~  276 (322)
                      ++.+++++++   .          ++++++||+   +++++++.|.. ..++......     . .+     ......+.
T Consensus       116 ~~~v~~~l~~---~----------~~vii~Sf~---l~~~~~~~p~~~~~~l~~~~~~-----~-~~-----~~~~~~~~  168 (234)
T 1o1z_A          116 ADAVLEISKK---R----------KNLIFSSFD---LDLLDEKFKGTKYGYLIDEENY-----G-SI-----ENFVERVE  168 (234)
T ss_dssp             HHHHHHHHTT---C----------CSEEEEESC---HHHHHHHCTTSCEEEECCTTTT-----C-SH-----HHHHHHHH
T ss_pred             HHHHHHHHhc---c----------CCEEEEchh---HHHHHhhCCCCcEEEEeccccc-----c-CH-----HHHHHHcC
Confidence            7888898887   2          389999999   88999887754 4444432110     0 00     01112222


Q ss_pred             h-hccccCCCcceeeecCCCCCCC--C--hHHHHHHHHcCCeEEEEeCCCC
Q 020686          277 E-YCVGIGPWKDTVVPVANNYSQT--P--TDLVARAHALDLQIHIGNTTTG  322 (322)
Q Consensus       277 ~-~~~~i~~~~~~~~~~~~~~~~~--~--~~~v~~ah~~Gl~V~vWTvn~~  322 (322)
                      . +..+       +.+   ++..+  +  +++++.+|++|++|++||||+|
T Consensus       169 ~~~~~~-------i~~---~~~~~g~~~~~~~v~~~~~~G~~v~~wTvn~~  209 (234)
T 1o1z_A          169 KERPYS-------LHV---PYQAFELEYAVEVLRSFRKKGIVIFVWTLNDP  209 (234)
T ss_dssp             HHCCSE-------EEE---EGGGGGSHHHHHHHHHHHHTTCEEEEESCCCH
T ss_pred             CCCCCE-------EEe---CHHHhcCCccHHHHHHHHHcCCEEEEeCCCCH
Confidence            1 1122       222   23334  6  8999999999999999999985

>1vd6_A Glycerophosphoryl diester phosphodiesterase; glycerophosphod phosphodiesterase, HB8; 1.30A {Thermus thermophilus} SCOP: c.1.18.3 PDB: 1v8e_A

Probab=100.00  E-value=3.2e-41  Score=298.96  Aligned_cols=192  Identities=22%  Similarity=0.310  Sum_probs=152.5

Q ss_pred             CCCCeEEeeCCCCCCCchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCCccccCCCCcccccccccccccCCcc
Q 020686           41 TSRPYNLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVN  120 (322)
Q Consensus        41 ~~~p~iiaHRG~~~~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~~~~~g~~  120 (322)
                      ..+|.+|||||+++.+||||++||++|++.|+|+||+|||+||||++||+||.+++     .                  
T Consensus         5 ~~~~~iiaHRG~~~~~PENTl~Af~~A~~~G~d~iE~DV~lT~Dg~lVv~HD~~l~-----~------------------   61 (224)
T 1vd6_A            5 RQRPLRLGHRGAPLKAKENTLESFRLALEAGLDGVELDVWPTRDGVFAVRHDPDTP-----L------------------   61 (224)
T ss_dssp             --CCEEEEETSCTTTSCTTSHHHHHHHHHTTCSEEEEEEEECTTSCEEECSCSEET-----T------------------
T ss_pred             CCCceEEECCCCCCCCCcchHHHHHHHHHcCCCEEEEEeeEecCCcEEEECCCccC-----C------------------
Confidence            56789999999999999999999999999999999999999999999999999997     2                  


Q ss_pred             cccceeeccCHHHHccCcccccccCCCcccCCCccccCHHHHHHHHHhcCCcceEeeeeCCcccccccccccCcchHHHH
Q 020686          121 TTGFFVVDFTLEELKTLRAKQRYSFRDQQYNGKFPIITFEEYISIALDAQRVVGIYPEMKNPVFINQHVKWADGKKFEDK  200 (322)
Q Consensus       121 ~~g~~i~~~t~~el~~l~~~~~~~~r~~~~~~~~~iptL~e~l~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~~~~~  200 (322)
                        | .|.++||+||++|+               +++|||+|+|+.+++ +..+.++||+|.+...        ...+++.
T Consensus        62 --g-~v~~~t~~eL~~l~---------------~~iptL~evl~~~~~-~~~~~l~iEiK~~~~~--------~~~~~~~  114 (224)
T 1vd6_A           62 --G-PVFQVDYADLKAQE---------------PDLPRLEEVLALKEA-FPQAVFNVELKSFPGL--------GEEAARR  114 (224)
T ss_dssp             --E-EGGGSCHHHHHHHS---------------TTCCBHHHHHGGGGT-CTTCEEEEEECCCTTS--------HHHHHHH
T ss_pred             --C-ChhhCCHHHHHhcC---------------CCCCCHHHHHHhhhc-cCCceEEEEECCCCCc--------cHHHHHH
Confidence              4 69999999999987               389999999999862 1348999999976421        1247788


Q ss_pred             HHHHHHHcCCCCccccccccCCCEEEeccChhHHHHHhhcCCC-CeEEEEeccCccCCCCcccccccccHHHHHHHHhhc
Q 020686          201 FVDTLKKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTDS-PKIFLIDDVDILTEDTNQSYSEITSDAYLNYIKEYC  279 (322)
Q Consensus       201 v~~~l~~~~~~~~~~~~~~~~~rv~i~Sf~~~~l~~~~~~~~~-~~v~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  279 (322)
                      +++++++   .          ++++++||++..+++++++.|. +..++.....                      ..++
T Consensus       115 v~~~l~~---~----------~~v~i~Sf~~~~l~~~~~~~p~~~~~~l~~~~~----------------------~~~~  159 (224)
T 1vd6_A          115 LAALLRG---R----------EGVWVSSFDPLALLALRKAAPGLPLGFLMAEDH----------------------SALL  159 (224)
T ss_dssp             HHHHTTT---C----------SSEEEEESCHHHHHHHHHHCTTSCEEEEESSCC----------------------GGGG
T ss_pred             HHHHHhc---C----------CcEEEEeCCHHHHHHHHHHCCCCCEEEEecccc----------------------HHHH
Confidence            8888877   2          3899999999999999998775 4455543210                      0111


Q ss_pred             cccCCCcceeeecCCCCCCCChHHHHHHHHcCCeEEEEeCCCC
Q 020686          280 VGIGPWKDTVVPVANNYSQTPTDLVARAHALDLQIHIGNTTTG  322 (322)
Q Consensus       280 ~~i~~~~~~~~~~~~~~~~~~~~~v~~ah~~Gl~V~vWTvn~~  322 (322)
                      ..+++  ..+.+   ++..+++++++.+|++|++|++||||+|
T Consensus       160 ~~~~~--~~i~~---~~~~~~~~~v~~~~~~G~~v~~wtvn~~  197 (224)
T 1vd6_A          160 PCLGV--EAVHP---HHALVTEEAVAGWRKRGLFVVAWTVNEE  197 (224)
T ss_dssp             GGSCC--SEEEE---BGGGCCHHHHHHHHHTTCEEEEECCCCH
T ss_pred             HHcCC--cEEec---CcccCCHHHHHHHHHCCCEEEEEeCCCH
Confidence            11222  22333   4556799999999999999999999985

>3i10_A Putative glycerophosphoryl diester phosphodiester; NP_812074.1; HET: MSE; 1.35A {Bacteroides thetaiotaomicron vpi-5482}

Probab=100.00  E-value=1.6e-38  Score=289.47  Aligned_cols=212  Identities=21%  Similarity=0.238  Sum_probs=161.4

Q ss_pred             CCCCCeEEeeCCCCCCCchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCCccccCCCCcccccccccccccCCc
Q 020686           40 QTSRPYNLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGV  119 (322)
Q Consensus        40 ~~~~p~iiaHRG~~~~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~~~~~g~  119 (322)
                      ..++|.+|||||+++.+||||++||++|++.|+|+||+|||+||||++||+||.+++|+|++.                 
T Consensus        14 ~~~~~~iiaHRG~~~~~pENTl~af~~A~~~g~d~iE~Dv~~TkDg~~vv~HD~~l~r~t~~~-----------------   76 (278)
T 3i10_A           14 KSNKVLVVAHRGNWRSAPENSTAAIDSAIAMKVDIVEIDIQKTKDGQLILMHDNTLDRTTTGK-----------------   76 (278)
T ss_dssp             TCCSCEEEEETSCTTTSCTTSHHHHHHHHHTTCSEEEEEEEECTTSCEEECSSSBSTTTBSCC-----------------
T ss_pred             CCCCCEEEECCCCCCCCCccHHHHHHHHHHcCCCEEEEEEEECCCCeEEEecCcchhhcCCCC-----------------
Confidence            356799999999999999999999999999999999999999999999999999999999987                 


Q ss_pred             ccccceeeccCHHHHccCcccccccCCCcccCCCccccCHHHHHHHHHhcCCcceEeeeeCCcccccccccccCcchHHH
Q 020686          120 NTTGFFVVDFTLEELKTLRAKQRYSFRDQQYNGKFPIITFEEYISIALDAQRVVGIYPEMKNPVFINQHVKWADGKKFED  199 (322)
Q Consensus       120 ~~~g~~i~~~t~~el~~l~~~~~~~~r~~~~~~~~~iptL~e~l~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~~~~  199 (322)
                         | .|.++||+||++|+++.++.    .+. .++||||+|+|+.++.   .+.++||.+              ..+++
T Consensus        77 ---g-~v~~~t~~el~~l~~~~~~~----~~~-~~~iptL~evl~~~~~---~~~~nie~~--------------~~~~~  130 (278)
T 3i10_A           77 ---G-EIKNWTLADIKKLKLKDKDG----KVT-NYVVPTLEEALLTAKG---KIMVNLDKA--------------YDIFD  130 (278)
T ss_dssp             ---S-BGGGSCHHHHTTSCBBCTTS----CBC-SCCCCBHHHHHHHHTT---TSEEEEESC--------------GGGHH
T ss_pred             ---c-eeecCcHHHHhcCCCCCCCc----ccC-CCCCCCHHHHHHHhcC---CeEEEEecC--------------chHHH
Confidence               4 79999999999999987542    233 3699999999999853   477888842              24789


Q ss_pred             HHHHHHHHcCCCCccccccccCCCEEEeccChhHHHHHhhcCCC-CeEEEEeccCccCCCCcccccccccHHHHHHHHhh
Q 020686          200 KFVDTLKKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTDS-PKIFLIDDVDILTEDTNQSYSEITSDAYLNYIKEY  278 (322)
Q Consensus       200 ~v~~~l~~~~~~~~~~~~~~~~~rv~i~Sf~~~~l~~~~~~~~~-~~v~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  278 (322)
                      .++++++++++.+          +++++|  ...+++++++.|. ...+++.+...           ...+...+.+..|
T Consensus       131 ~v~~~l~~~~~~~----------~v~i~s--~~~l~~~~~~~p~~~~~~l~~p~i~-----------~~~~~~~~~i~~~  187 (278)
T 3i10_A          131 DVYAILEKTETQN----------QVIMKG--GQPIETVKREFGSYLDKVLYMPVID-----------LGNKEAEKIITDY  187 (278)
T ss_dssp             HHHHHHHHHTCGG----------GEEEEE--SSCHHHHHHHHGGGTTTSEEEEEEE-----------TTSTTHHHHHHHH
T ss_pred             HHHHHHHHcCCCC----------eEEEEE--hHHHHHHHHHCcCCccceEEEeeec-----------ccccchHHHHHHH
Confidence            9999999999875          899999  3468888887543 22222221100           0011123445555


Q ss_pred             ccccCCCcceeeecCCCCCCCChHHHHHHHHcCCeEEEEeC
Q 020686          279 CVGIGPWKDTVVPVANNYSQTPTDLVARAHALDLQIHIGNT  319 (322)
Q Consensus       279 ~~~i~~~~~~~~~~~~~~~~~~~~~v~~ah~~Gl~V~vWTv  319 (322)
                      ...+.+....+..  .......+++++.+|++|++|++||+
T Consensus       188 ~~~~~p~~~~~~~--~~~~~~~~~~v~~~~~~g~~v~~nTl  226 (278)
T 3i10_A          188 LKELRPAAFEIIY--SDPKNPLPPKIKQLLFKKSLIWYNTL  226 (278)
T ss_dssp             HHHTCCSEEEEEB--CCTTCSSHHHHHHHHTTTSEEEEECS
T ss_pred             HHhcCceEEEEee--cCCccchHHHHHHHHHCCCEEEEEec
Confidence            5556665333221  13344458999999999999999995

>1xx1_A Smase I, sphingomyelinase I; structure, quick cryo-soaking, activity, smase D, hydrolase; HET: EPE; 1.75A {Loxosceles laeta} PDB: 2f9r_A*

Probab=99.97  E-value=3.9e-32  Score=248.84  Aligned_cols=210  Identities=16%  Similarity=0.157  Sum_probs=134.2

Q ss_pred             CCCC-eEEeeCCCCCCCchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCC---CccccCCCCccccccccccccc
Q 020686           41 TSRP-YNLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVF---LDDTTNIADHKEFADRKRTCMV  116 (322)
Q Consensus        41 ~~~p-~iiaHRG~~~~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~---l~r~t~~~~~~~~~~~~~~~~~  116 (322)
                      ..+| ++||||       |||++||++|++.|+|+||+|||+ |||++||+||.+   ++|+|++.              
T Consensus         3 ~~~p~~iiaHr-------ENTl~Af~~A~~~Gad~IE~DV~l-kDG~lVv~HD~~~~~l~Rtt~~~--------------   60 (285)
T 1xx1_A            3 NRRPIWNLAHM-------VNAVAQIPDFLDLGANALEADVTF-KGSVPTYTYHGTPCDFGRDCIRW--------------   60 (285)
T ss_dssp             CSEEEEEEESC-------CCSTTHHHHHHHHTCSEEEEEEEE-ETTEEEEEECCSSCCTTSCSCCE--------------
T ss_pred             CCCCcEEEEeh-------hccHHHHHHHHHhCCCEEEEEEEE-ECCEEEEEcCCcccccccccCCC--------------
Confidence            3567 899999       999999999999999999999999 999999999999   99999987              


Q ss_pred             CCcccccceeeccCHHHHccCcccccccCCCcccCCCccccCHHHHHHHHHhcCCcceEeeeeCCcccccccccccCcch
Q 020686          117 QGVNTTGFFVVDFTLEELKTLRAKQRYSFRDQQYNGKFPIITFEEYISIALDAQRVVGIYPEMKNPVFINQHVKWADGKK  196 (322)
Q Consensus       117 ~g~~~~g~~i~~~t~~el~~l~~~~~~~~r~~~~~~~~~iptL~e~l~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~  196 (322)
                            | .|.++ ++||++|++.  +   +         |++++.|         ..++||||.+....... .+.+..
T Consensus        61 ------g-~v~d~-l~eL~~l~~~--~---~---------~~~~~~L---------~~l~iEiK~~~~~~~~~-~~~~~~  108 (285)
T 1xx1_A           61 ------E-YFNVF-LKTLREYTTP--G---N---------AKYRDGF---------ILFVLDLKTGSLSNDQV-RPAGEN  108 (285)
T ss_dssp             ------E-EHHHH-HHHHHHHTST--T---C---------TTCCTTC---------CEEEEEECCTTCCHHHH-HHHHHH
T ss_pred             ------c-cHHHH-HHHHHHcccC--C---C---------Ccccccc---------cEEEEecCCCccccccc-chhhhh
Confidence                  4 79999 9999999972  1   1         2222222         17899999864211000 000001


Q ss_pred             HHHHHHHHHHHcCCCCccccccccCCC----EEEeccChhHHHH-Hhhc-------CCC-CeEEEEeccCccCCCCcccc
Q 020686          197 FEDKFVDTLKKYGYKGAYMSKEWLKQP----IFIQSFAPTSLVY-ISNK-------TDS-PKIFLIDDVDILTEDTNQSY  263 (322)
Q Consensus       197 ~~~~v~~~l~~~~~~~~~~~~~~~~~r----v~i~Sf~~~~l~~-~~~~-------~~~-~~v~l~~~~~~~~~~~~~~~  263 (322)
                      +++.   ++++++....      ...+    ++|+||++..|.+ +|++       .|. +..+++......      ..
T Consensus       109 ~~~~---ll~~~~~~~~------~~~~~~~~v~i~SF~~~~l~~~~~~~~~~~~~~~p~~~~~~l~~~~~~~------~~  173 (285)
T 1xx1_A          109 VAKE---LLQNYWNNGN------NGGRAYVVLSLPDIGHYEFVRGFKEVLKKEGHEDLLEKVGYDFSGPYLP------SL  173 (285)
T ss_dssp             HHHH---HHHHTSGGGS------SCCCCEEEEEESCGGGHHHHHHHHHHHHHTTCGGGGGGEEEEECCCCSS------SC
T ss_pred             HHHH---HHHHHhhccc------cccccceeEEEEeCCHHHHHHHHHHHhhhccccCcccceEEeccccccc------ch
Confidence            2323   5666654310      0136    9999999999999 9987       664 455554332100      00


Q ss_pred             cccccHHHHHHHHhh-ccccCCCcceeeecC---CCCCCCChHHHHHHHHcCC--eEEEEeCCCC
Q 020686          264 SEITSDAYLNYIKEY-CVGIGPWKDTVVPVA---NNYSQTPTDLVARAHALDL--QIHIGNTTTG  322 (322)
Q Consensus       264 ~~~~~~~~l~~~~~~-~~~i~~~~~~~~~~~---~~~~~~~~~~v~~ah~~Gl--~V~vWTvn~~  322 (322)
                      ..  .....+.+... +.+ ++|........   ..+..+++++++.+|++|+  +|++||||+|
T Consensus       174 ~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~Glg~~V~~WTvn~~  235 (285)
T 1xx1_A          174 PT--LDATHEAYKKAGVDG-HIWLSDGLTNFSPLGDMARLKEAIKSRDSANGFINKIYYWSVDKV  235 (285)
T ss_dssp             CC--HHHHHHHHHHHTCCS-CBEEEECSCCSSHHHHHHHHHHHHHHHTSTTCCCCEEEEECCCSH
T ss_pred             hh--HHHHHHHHHHhCCCC-ccccccccccccccccHHHHhHHHHHHHHhcCCCCeEEEeeCCCH
Confidence            00  01111222221 111 22210000000   0023457899999999999  9999999985

>3rlg_A Sphingomyelin phosphodiesterase D lisictox-alphai; TIM beta/alpha-barrel, PLC-like phosphodiesterase, inactive H12A phospholipase D; HET: PGE; 1.60A {Loxosceles intermedia} PDB: 3rlh_A*

Probab=99.73  E-value=4.8e-19  Score=159.45  Aligned_cols=141  Identities=15%  Similarity=0.173  Sum_probs=96.4

Q ss_pred             CCCCC-eEEeeCCCCCCCchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCC---CCccccCCCCcccccccccccc
Q 020686           40 QTSRP-YNLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDV---FLDDTTNIADHKEFADRKRTCM  115 (322)
Q Consensus        40 ~~~~p-~iiaHRG~~~~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~---~l~r~t~~~~~~~~~~~~~~~~  115 (322)
                      ...+| .+||||       |||+++|+.|++.||++||+||++|+||+||+.||.   ++.|.+....            
T Consensus        24 ~~~rp~~~i~H~-------vNTl~~~~~a~~~GAn~IE~DV~~~~dg~~v~~hhg~pcdc~r~C~~~~------------   84 (302)
T 3rlg_A           24 GNRRPIWIMGAM-------VNAIGQIDEFVNLGANSIETDVSFDDNANPEYTYHGIPCDCGRNCKKYE------------   84 (302)
T ss_dssp             CCCEEEEEEESC-------CCSHHHHHHHHHTTCSEEEEEECBCTTSCBCBCCCCSSCCTTCCSCCCC------------
T ss_pred             cCCCceEEEeeh-------hhhHHHHHHHHHcCCCEEEEEEEECCCCCEEEEECCCCcchhccCCCCc------------
Confidence            34556 889997       999999999999999999999999999999999998   4455444331            


Q ss_pred             cCCcccccceeeccCHHHHccCcccccccCCCcccCCCccccCHHHHHHHHHhcCCcceEeeeeCCcccccccccccCcc
Q 020686          116 VQGVNTTGFFVVDFTLEELKTLRAKQRYSFRDQQYNGKFPIITFEEYISIALDAQRVVGIYPEMKNPVFINQHVKWADGK  195 (322)
Q Consensus       116 ~~g~~~~g~~i~~~t~~el~~l~~~~~~~~r~~~~~~~~~iptL~e~l~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~  195 (322)
                               .+.+ .+++|+++.-..     +++|.                  ++-+-+.+|+|.+...... .+..+.
T Consensus        85 ---------~~~~-~l~~lr~~ttpg-----~~k~~------------------~~l~lv~~DlK~~~l~~~~-~~~aG~  130 (302)
T 3rlg_A           85 ---------NFND-FLKGLRSATTPG-----NSKYQ------------------EKLVLVVFDLKTGSLYDNQ-ANDAGK  130 (302)
T ss_dssp             ---------BHHH-HHHHHHHHHSTT-----STTCC------------------TTCCEEEEEECGGGSCGGG-HHHHHH
T ss_pred             ---------cHHH-HHHHHHHhcCCC-----CCccc------------------cceEEEEEEcCCCCCCHHH-HHHhHH
Confidence                     2333 555555433210     11111                  2346678999987654322 223456


Q ss_pred             hHHHHHHHHHHHcCCCCccccccccCCCEEEeccChhHHHHHhhc
Q 020686          196 KFEDKFVDTLKKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNK  240 (322)
Q Consensus       196 ~~~~~v~~~l~~~~~~~~~~~~~~~~~rv~i~Sf~~~~l~~~~~~  240 (322)
                      .+++++++.+.+.|....       ...|++|+|+...++.++..
T Consensus       131 ~la~kLl~~~w~~g~~~~-------ra~vilsi~~~~~~~~l~gf  168 (302)
T 3rlg_A          131 KLAKNLLQHYWNNGNNGG-------RAYIVLSIPDLNHYPLIKGF  168 (302)
T ss_dssp             HHHHHHHHHTSGGGSSCC-------CCEEEEEESCGGGTHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCCc-------eeEEEEecCcchHHHHHHHH
Confidence            778888888877544321       13799999999877777653

>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A

Probab=95.30  E-value=0.0093  Score=59.61  Aligned_cols=49  Identities=20%  Similarity=0.257  Sum_probs=42.8

Q ss_pred             eeCCC---CCCCchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCCc
Q 020686           48 AHRGS---NGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLD   96 (322)
Q Consensus        48 aHRG~---~~~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l~   96 (322)
                      +|.-.   .-..-+.|.++|.+|+..||+.||+|++=-.||.|||+|-.||-
T Consensus       178 sHNTYL~G~Ql~~~ss~e~y~~aL~~GcRcvElD~wdg~~~ep~v~HG~tlt  229 (624)
T 1djx_A          178 SHNTYLLEDQLTGPSSTEAYIRALCKGCRCLELDCWDGPNQEPIIYHGYTFT  229 (624)
T ss_dssp             ESSTTBSSCSSSCCBCHHHHHHHHHTTCCEEEEEEECCGGGCCEECCTTSCC
T ss_pred             ccchhhhcCcccCCcCHHHHHHHHHhCCcEEEEEeecCCCCCeEEecCCccc
Confidence            67654   23667889999999999999999999999999999999998873

>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B

Probab=94.94  E-value=0.014  Score=59.99  Aligned_cols=48  Identities=21%  Similarity=0.214  Sum_probs=42.1

Q ss_pred             eeCCC---CCCCchhHHHHHHHHHHcCCCEEEeeeeEcC--CCeEEEEeCCCC
Q 020686           48 AHRGS---NGEFPEETAAAYMRAIEEGADFIETDILASK--DGVLICHHDVFL   95 (322)
Q Consensus        48 aHRG~---~~~~pENT~~Af~~A~~~G~d~iE~DV~lTk--Dg~~Vv~HD~~l   95 (322)
                      +|.-.   .-+.-+-|.++|.+|+..||..||+|++=-.  ||.|||+|-.|+
T Consensus       326 SHNTYL~g~Ql~g~ss~e~y~~aL~~GcRcvElD~Wdg~~~~~ep~v~HG~Tl  378 (799)
T 2zkm_X          326 SHNTYLTAGQFSGLSSAEMYRQVLLSGCRCVELDCWKGKPPDEEPIITHGFTM  378 (799)
T ss_dssp             BSSTTBSSCSSSSCBCTHHHHHHHHTTCCEEEEEEECCCTTCCSCEECCTTSS
T ss_pred             cccceeecCcccCcccHHHHHHHHHhCCCEEEEEeecCCCCCCCCEEEeCCcc
Confidence            67654   2366789999999999999999999999988  999999999887

>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A

Probab=94.50  E-value=0.02  Score=58.77  Aligned_cols=49  Identities=20%  Similarity=0.263  Sum_probs=42.3

Q ss_pred             eeCCC---CCCCchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCCc
Q 020686           48 AHRGS---NGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLD   96 (322)
Q Consensus        48 aHRG~---~~~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l~   96 (322)
                      +|.-.   .-+.-+-|..+|.+|+..|+..||+|++=-.||+|||.|-.|+-
T Consensus       337 shntyL~g~ql~g~ss~~~y~~aL~~gcRcvEld~wdg~~~ePvv~HG~Tlt  388 (816)
T 3qr0_A          337 SHNTYLTGHQLTGKSSVEIYRQVLLTGCRCLELDCWDGKDGEPIITHGFTMC  388 (816)
T ss_dssp             BSSTTBSSCTTTSCBCSHHHHHHHHTTCCEEEEEEECCTTSSCEECCTTSSC
T ss_pred             cccchhccccccCcccHHHHHHHHHhCCcEEEEEEecCCCCCceEccCCccc
Confidence            66644   23566788999999999999999999999999999999998873

>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}

Probab=93.17  E-value=0.038  Score=57.19  Aligned_cols=48  Identities=15%  Similarity=0.181  Sum_probs=40.6

Q ss_pred             eeCCC---CCCCchhHHHHHHHHHHcCCCEEEeeeeEc--CCCeEEEEeCCCC
Q 020686           48 AHRGS---NGEFPEETAAAYMRAIEEGADFIETDILAS--KDGVLICHHDVFL   95 (322)
Q Consensus        48 aHRG~---~~~~pENT~~Af~~A~~~G~d~iE~DV~lT--kDg~~Vv~HD~~l   95 (322)
                      +|.-.   .-+.-+-|..+|.+|+..|+..||+|++=-  .||+|||.|-.++
T Consensus       330 sHNtYL~g~Ql~~~ss~~~y~~aL~~gcRcvEld~wdg~~~~~ep~v~hg~t~  382 (885)
T 3ohm_B          330 SHNTYLTAGQLAGTSSVEMYRQALLWGCRCVELDVWKGRPPEEEPFITHGFTM  382 (885)
T ss_dssp             BSSTTBSSCSSEECBCSHHHHHHHHTTCCEEEEEEECCCSSSCCCEECSTTSE
T ss_pred             cccceeccccccCcCcHHHHHHHHHhCCCEEEEEeeCCCCCCCCCEEeeCCcc
Confidence            66644   225567889999999999999999999966  7899999999987

>3h4x_A Phosphatidylinositol-specific phospholipase C1; PI-PLC, Ca2+-dependent, catalytic TIM barrel, disulfide-LINK loop, hydrolase; 1.23A {Streptomyces antibioticus} PDB: 3h4w_A

Probab=92.30  E-value=0.28  Score=44.45  Aligned_cols=47  Identities=19%  Similarity=0.210  Sum_probs=35.1

Q ss_pred             EEeeCCCCCCCchhHHHHHHHHHHcCCCEEEeeeeEcC-CCeEEEEeCCCCc
Q 020686           46 NLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASK-DGVLICHHDVFLD   96 (322)
Q Consensus        46 iiaHRG~~~~~pENT~~Af~~A~~~G~d~iE~DV~lTk-Dg~~Vv~HD~~l~   96 (322)
                      +-+|--.....    ...+..|++.|+.+||+||+-.. .|.+-|+|...+.
T Consensus        34 ~g~HNSY~~g~----~~~i~~qLd~GVR~LELDIw~n~~~g~~~V~Hg~~l~   81 (339)
T 3h4x_A           34 VGVHNAYEKEK----YRYFADALDSGAALLELDLWSNALGRSWRVSHSNPLG   81 (339)
T ss_dssp             EEETTTTCTTT----CSSHHHHHTTCCSEEEEEEESSSSSSSCEECSSSCSS
T ss_pred             eeccccccccC----cccHHHHHHhCCCEEEEEeecCCCCCCeEEeCCCccc
Confidence            34676542221    46789999999999999999875 4578999987664

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	322
d1ydya1	328	c.1.18.3 (A:29-356) Glycerophosphodiester phosphod	2e-37
d1vd6a1	217	c.1.18.3 (A:8-224) Putative glycerophosphodiester	5e-16
d1zcca1	240	c.1.18.3 (A:1-240) Glycerophosphodiester phosphodi	8e-15
d1o1za_	226	c.1.18.3 (A:) Hypothetical protein TM1621 {Thermot	3e-14

>d1ydya1 c.1.18.3 (A:29-356) Glycerophosphodiester phosphodiesterase GlpQ {Escherichia coli [TaxId: 562]} Length = 328

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: PLC-like phosphodiesterases
family: Glycerophosphoryl diester phosphodiesterase
domain: Glycerophosphodiester phosphodiesterase GlpQ
species: Escherichia coli [TaxId: 562]

 Score =  134 bits (336), Expect = 2e-37
 Identities = 82/298 (27%), Positives = 125/298 (41%), Gaps = 51/298 (17%)

Query: 48  AHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEF 107
           AHRG++G  PE T  A   A  +GAD++E D++ +KD  L+  HD +LD  T++AD    
Sbjct: 7   AHRGASGYLPEHTLPAKAMAYAQGADYLEQDLVMTKDDNLVVLHDHYLDRVTDVADRFPD 66

Query: 108 ADRKRTCMVQGVNTTGFFVVDFTLEELKTLRAK-----------QRYSFRDQQYNGKFPI 156
             R             ++ +DFTL+E+K+L+             Q Y  R       F +
Sbjct: 67  RAR---------KDGRYYAIDFTLDEIKSLKFTEGFDIENGKKVQTYPGRFPMGKSDFRV 117

Query: 157 ITFEEYI----SIALDAQRVVGIYPEMKNPVFINQHVKWADGKKFEDKFVDTLKKYGYKG 212
            TFEE I     +     + +GIYPE+K P F +Q      GK    K ++ LKKYGY G
Sbjct: 118 HTFEEEIEFVQGLNHSTGKNIGIYPEIKAPWFHHQE-----GKDIAAKTLEVLKKYGYTG 172

Query: 213 AYMSKEWLKQPIFIQSFAPTSLVYISNKTDS------PKIFLIDDVD--------ILTED 258
                      +++Q F    L  I N+ +         + LI   D             
Sbjct: 173 K-------DDKVYLQCFDADELKRIKNELEPKMGMELNLVQLIAYTDWNETQQKQPDGSW 225

Query: 259 TNQSYSEITSDAYLNYIKEYCVGIGPWKDTVVPV-ANNYSQTPTDLVARAHALDLQIH 315
            N +Y  +     +  + EY  GIGP    ++   +   +   T +V  A    L +H
Sbjct: 226 VNYNYDWMFKPGAMKQVAEYADGIGPDYHMLIEETSQPGNIKLTGMVQDAQQNKLVVH 283

>d1vd6a1 c.1.18.3 (A:8-224) Putative glycerophosphodiester phosphodiesterase TTHB141 {Thermus thermophilus [TaxId: 274]} Length = 217

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: PLC-like phosphodiesterases
family: Glycerophosphoryl diester phosphodiesterase
domain: Putative glycerophosphodiester phosphodiesterase TTHB141
species: Thermus thermophilus [TaxId: 274]

 Score = 73.5 bits (179), Expect = 5e-16
 Identities = 18/61 (29%), Positives = 27/61 (44%)

Query: 44  PYNLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIAD 103
           P  L HRG+  +  E T  ++  A+E G D +E D+  ++DGV    HD           
Sbjct: 1   PLRLGHRGAPLKAKENTLESFRLALEAGLDGVELDVWPTRDGVFAVRHDPDTPLGPVFQV 60

Query: 104 H 104
            
Sbjct: 61  D 61

>d1zcca1 c.1.18.3 (A:1-240) Glycerophosphodiester phosphodiesterase UgpQ {Agrobacterium tumefaciens [TaxId: 358]} Length = 240

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: PLC-like phosphodiesterases
family: Glycerophosphoryl diester phosphodiesterase
domain: Glycerophosphodiester phosphodiesterase UgpQ
species: Agrobacterium tumefaciens [TaxId: 358]

 Score = 70.8 bits (172), Expect = 8e-15
 Identities = 37/146 (25%), Positives = 50/146 (34%), Gaps = 28/146 (19%)

Query: 48  AHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEF 107
           +HRG+N   PE T AA   A+++GAD+IE D+  S DGVL   HD               
Sbjct: 6   SHRGANRFAPENTFAAADLALQQGADYIELDVRESADGVLYVIHDET------------- 52

Query: 108 ADRKRTCMVQGVNTTGFFVVDFTLEELKTLRAKQRYSFRDQQYNGKFPIITFEEYISIAL 167
               RT    G       V      E+ TL       F D+      P +          
Sbjct: 53  --LDRTTNGTG------PVGHMLSSEIDTLD--AGGWFDDRFKGAIVPRLDAYLEHL--- 99

Query: 168 DAQRVVGIYPEMKNPVFINQHVKWAD 193
             +   G+Y E+K             
Sbjct: 100 --RGRAGVYIELKYCDPAKVAALVRH 123

>d1o1za_ c.1.18.3 (A:) Hypothetical protein TM1621 {Thermotoga maritima [TaxId: 2336]} Length = 226

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: PLC-like phosphodiesterases
family: Glycerophosphoryl diester phosphodiesterase
domain: Hypothetical protein TM1621
species: Thermotoga maritima [TaxId: 2336]

 Score = 68.9 bits (167), Expect = 3e-14
 Identities = 22/70 (31%), Positives = 34/70 (48%)

Query: 48  AHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEF 107
            HRG + ++ E T  A+M+AIE GA+ +E D+  SKDG ++  HD  L     +      
Sbjct: 9   GHRGYSAKYLENTLEAFMKAIEAGANGVELDVRLSKDGKVVVSHDEDLKRLFGLDVKIRD 68

Query: 108 ADRKRTCMVQ 117
           A       + 
Sbjct: 69  ATVSELKELT 78

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	322
d1ydya1	328	Glycerophosphodiester phosphodiesterase GlpQ {Esch	100.0
d1zcca1	240	Glycerophosphodiester phosphodiesterase UgpQ {Agro	100.0
d1o1za_	226	Hypothetical protein TM1621 {Thermotoga maritima [	100.0
d1vd6a1	217	Putative glycerophosphodiester phosphodiesterase T	100.0
d1qasa3	327	Phospholipase C isozyme D1 (PLC-D1) {Rat (Rattus n	97.11
d2zkmx4	349	Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI	96.57

>d1ydya1 c.1.18.3 (A:29-356) Glycerophosphodiester phosphodiesterase GlpQ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: PLC-like phosphodiesterases
family: Glycerophosphoryl diester phosphodiesterase
domain: Glycerophosphodiester phosphodiesterase GlpQ
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=8.5e-44  Score=327.87  Aligned_cols=260  Identities=32%  Similarity=0.480  Sum_probs=193.5

Q ss_pred             CCCeEEeeCCCCCCCchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCCccccCCCCcccccccccccccCCccc
Q 020686           42 SRPYNLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVNT  121 (322)
Q Consensus        42 ~~p~iiaHRG~~~~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~~~~~g~~~  121 (322)
                      ++|+||||||+++.+||||++||++|++.|+|+||||||+||||++||+||.+|.|+|+....+....+.     +|   
T Consensus         1 ~~~liIaHRG~~~~~PENTl~af~~A~~~gad~iE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~-----~~---   72 (328)
T d1ydya1           1 NEKIVIAHRGASGYLPEHTLPAKAMAYAQGADYLEQDLVMTKDDNLVVLHDHYLDRVTDVADRFPDRARK-----DG---   72 (328)
T ss_dssp             CCCEEEETTTTTTTSSTTCHHHHHHHHHTTCSEEEEEEEECTTSCEEECSSSBCTTTBSHHHHSTTCCCT-----TS---
T ss_pred             CCCEEEeCCCCCCCCCccHHHHHHHHHHcCCCEEEEeeeEccCCcEEEECCchhhcccCCCCCccccccc-----CC---
Confidence            4799999999999999999999999999999999999999999999999999999999876311111110     11   


Q ss_pred             ccceeeccCHHHHccCcccccc-----------cCCCcccCCCccccCHHHHHHHHHhc----CCcceEeeeeCCccccc
Q 020686          122 TGFFVVDFTLEELKTLRAKQRY-----------SFRDQQYNGKFPIITFEEYISIALDA----QRVVGIYPEMKNPVFIN  186 (322)
Q Consensus       122 ~g~~i~~~t~~el~~l~~~~~~-----------~~r~~~~~~~~~iptL~e~l~~~~~~----~~~~~l~iEiK~~~~~~  186 (322)
                      .| .|.++|++||++|+++.++           +.+.....+..++|||+|+++.++..    +..+.+++|+|.+....
T Consensus        73 ~~-~v~~~t~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iptL~~~~~~~~~~~~~~~~~~~~~iEiK~~~~~~  151 (328)
T d1ydya1          73 RY-YAIDFTLDEIKSLKFTEGFDIENGKKVQTYPGRFPMGKSDFRVHTFEEEIEFVQGLNHSTGKNIGIYPEIKAPWFHH  151 (328)
T ss_dssp             CC-BGGGSCHHHHHHSCBCSCEEEETTEEEESSTTSSCTTCSCCCCCBHHHHHHHHHHHHHHHSCCCEEEEEECCHHHHH
T ss_pred             Cc-eeeecchhhhhccccccccccccccccccccccccccCCCcccCcHHHHHHHHHHHhhhcCCCceeeeccCCcchhh
Confidence            13 7999999999999988653           22333444567999999999998642    34588999999876543


Q ss_pred             ccccccCcchHHHHHHHHHHHcCCCCccccccccCCCEEEeccChhHHHHHhhc-----CC-CCeEEEEeccCcc-----
Q 020686          187 QHVKWADGKKFEDKFVDTLKKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNK-----TD-SPKIFLIDDVDIL-----  255 (322)
Q Consensus       187 ~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~rv~i~Sf~~~~l~~~~~~-----~~-~~~v~l~~~~~~~-----  255 (322)
                      .     .+...++.+.+++++++..+.       .++|+++||++++|+++++.     .+ .+.+.++......     
T Consensus       152 ~-----~~~~~~~~~~~~~~~~~~~~~-------~~~v~~~SF~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~  219 (328)
T d1ydya1         152 Q-----EGKDIAAKTLEVLKKYGYTGK-------DDKVYLQCFDADELKRIKNELEPKMGMELNLVQLIAYTDWNETQQK  219 (328)
T ss_dssp             H-----TTCCHHHHHHHHHHHTTCCST-------TSSBEEEESCHHHHHHHHHTHHHHHTCCCEEEEEECCGGGCCCEEE
T ss_pred             h-----cchhhHHHHHHHHHHhcccCC-------CceEEEEecCHHHHHHHHHHcCcccccccceeeeecccccchhccc
Confidence            3     345788999999999876542       35899999999999999864     12 2233333322111     


Q ss_pred             ---CCCCcccccccccHHHHHHHHhhccccCCCcceeeec-CCCCCCCChHHHHHHHHcCCeEEEEeCCCC
Q 020686          256 ---TEDTNQSYSEITSDAYLNYIKEYCVGIGPWKDTVVPV-ANNYSQTPTDLVARAHALDLQIHIGNTTTG  322 (322)
Q Consensus       256 ---~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~v~~ah~~Gl~V~vWTvn~~  322 (322)
                         .......|..+.....+..+..++.++++....+.+. .......++.+|+.+|++|+.|++||||++
T Consensus       220 ~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~gl~v~~wTvn~~  290 (328)
T d1ydya1         220 QPDGSWVNYNYDWMFKPGAMKQVAEYADGIGPDYHMLIEETSQPGNIKLTGMVQDAQQNKLVVHPYTVRSD  290 (328)
T ss_dssp             CTTSCEEECCCGGGGSTTHHHHHTTTCSEEEEBGGGTBCTTCBTTBCCBCSHHHHHHHTTCEECCBCBCTT
T ss_pred             cccccccccchhhhcChhhHHHHHhhCCeeecchhhcccccccccccCCHHHHHHHHHCCCEEEEEccCCh
Confidence               0111223445555667888888888887766665554 334566789999999999999999999974

>d1zcca1 c.1.18.3 (A:1-240) Glycerophosphodiester phosphodiesterase UgpQ {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: PLC-like phosphodiesterases
family: Glycerophosphoryl diester phosphodiesterase
domain: Glycerophosphodiester phosphodiesterase UgpQ
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=100.00  E-value=2.2e-43  Score=313.44  Aligned_cols=203  Identities=25%  Similarity=0.271  Sum_probs=160.6

Q ss_pred             eEEeeCCCCCCCchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCCccccCCCCcccccccccccccCCcccccc
Q 020686           45 YNLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVNTTGF  124 (322)
Q Consensus        45 ~iiaHRG~~~~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~~~~~g~~~~g~  124 (322)
                      .||||||+++.+||||++||++|++.|+++|||||++||||++||+||.+++|+|++.                    | 
T Consensus         3 ~iiaHRG~~~~~pENT~~a~~~A~~~G~~~iE~Dv~~TkDg~~Vv~HD~~l~r~t~~~--------------------~-   61 (240)
T d1zcca1           3 KIVSHRGANRFAPENTFAAADLALQQGADYIELDVRESADGVLYVIHDETLDRTTNGT--------------------G-   61 (240)
T ss_dssp             EEEETTTTTTTSCSSSHHHHHHHHHTTCSEEEEEEEECTTCCEEECSSSBTTTTSSCC--------------------S-
T ss_pred             EEEECCCCCCCCCccHHHHHHHHHHcCCCEEEEEEEEecCCCEEEecccccccccccc--------------------c-
Confidence            5899999999999999999999999999999999999999999999999999999987                    4 


Q ss_pred             eeeccCHHHHccCcccccccCCCcccCCCccccCHHHHHHHHHhcCCcceEeeeeCCcccccccccccCcchHHHHHHHH
Q 020686          125 FVVDFTLEELKTLRAKQRYSFRDQQYNGKFPIITFEEYISIALDAQRVVGIYPEMKNPVFINQHVKWADGKKFEDKFVDT  204 (322)
Q Consensus       125 ~i~~~t~~el~~l~~~~~~~~r~~~~~~~~~iptL~e~l~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~~~~~v~~~  204 (322)
                      .|.++||+||++|+++.++.   ..+.+ .+||||+|+|+.++.   .+.++||+|.+.              .+.+.++
T Consensus        62 ~v~~~t~~el~~l~~~~~~~---~~~~~-~~IptL~evl~~~~~---~~~l~iEiK~~~--------------~~~v~~l  120 (240)
T d1zcca1          62 PVGHMLSSEIDTLDAGGWFD---DRFKG-AIVPRLDAYLEHLRG---RAGVYIELKYCD--------------PAKVAAL  120 (240)
T ss_dssp             BSTTSCHHHHTTSCSSTTTC---GGGTT-CCCCBHHHHHHHHTT---TCEEEEEEEESC--------------HHHHHHH
T ss_pred             cHHHhhHHHHHHhhccCcCc---cccCC-CcCChHHHhhhcccc---cceeEEEEccCc--------------chhhhHH
Confidence            79999999999999987654   23444 599999999999853   478999999642              3567888


Q ss_pred             HHHcCCCCccccccccCCCEEEeccChhHHHHHhhcCCCCeEEEEeccCccCCCCcccccccccHHHHHHHHhhccccCC
Q 020686          205 LKKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTDSPKIFLIDDVDILTEDTNQSYSEITSDAYLNYIKEYCVGIGP  284 (322)
Q Consensus       205 l~~~~~~~~~~~~~~~~~rv~i~Sf~~~~l~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~  284 (322)
                      +++++...          +++++||+++.++++++..|....+++.....             .. ........+..+..
T Consensus       121 ~~~~~~~~----------~v~~~Sf~~~~l~~~~~~~P~~~~~~~~~~~~-------------~~-~~~~~~~~~~~~~~  176 (240)
T d1zcca1         121 VRHLGMVR----------DTFYFSFSEEMRQGLQSIAPEFRRMMTLDIAK-------------SP-SLVGAVHHASIIEI  176 (240)
T ss_dssp             HHHHTCST----------TEEEECSCHHHHHHHHHHCTTSEEEEEHHHHS-------------ST-HHHHHTTCCSEEEE
T ss_pred             HHHHHhhc----------ccccccccHHHHHHHHHhhhccceEEeecccc-------------cc-hhHHHHhccccccc
Confidence            99988764          89999999999999999987655444322110             00 11122222211111


Q ss_pred             CcceeeecCCCCCCCChHHHHHHHHcCCeEEEEeCCCC
Q 020686          285 WKDTVVPVANNYSQTPTDLVARAHALDLQIHIGNTTTG  322 (322)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~v~~ah~~Gl~V~vWTvn~~  322 (322)
                           .    ++...++++++.+|++|++|++||+|++
T Consensus       177 -----~----~~~~~~~~~v~~~~~~Gl~v~~wTvnd~  205 (240)
T d1zcca1         177 -----T----PAQMRRPGIIEASRKAGLEIMVYYGGDD  205 (240)
T ss_dssp             -----C----HHHHHSHHHHHHHHHHTCEEEEECCCCC
T ss_pred             -----c----hhhhCCHHHHHHHHHCCCEEEEEccCCH
Confidence                 0    2334588999999999999999999874

>d1o1za_ c.1.18.3 (A:) Hypothetical protein TM1621 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: PLC-like phosphodiesterases
family: Glycerophosphoryl diester phosphodiesterase
domain: Hypothetical protein TM1621
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=2.7e-41  Score=296.69  Aligned_cols=199  Identities=22%  Similarity=0.233  Sum_probs=150.1

Q ss_pred             CCCCeEEeeCCCCCCCchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCCccccCCCCcccccccccccccCCcc
Q 020686           41 TSRPYNLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVN  120 (322)
Q Consensus        41 ~~~p~iiaHRG~~~~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~~~~~g~~  120 (322)
                      .+.|+||||||+++.+||||++||++|++.|+|+|||||++||||++||+||.+++|+|++.                  
T Consensus         2 ~~~~~iiaHRG~~~~~pENT~~af~~a~~~g~~~iE~Dv~~T~Dg~~Vv~HD~~l~r~t~~~------------------   63 (226)
T d1o1za_           2 HHHVIVLGHRGYSAKYLENTLEAFMKAIEAGANGVELDVRLSKDGKVVVSHDEDLKRLFGLD------------------   63 (226)
T ss_dssp             CCCCEEEEETTTTTTSCTTSHHHHHHHHHTTCSEEEEEEEECTTSCEEECSSSEEHHHHCEE------------------
T ss_pred             CCCCEEEECCCCCCCCCcchHHHHHHHHHcCCCEEEEEEEEccCCCEEeeccceeeeeeccc------------------
Confidence            46899999999999999999999999999999999999999999999999999999999987                  


Q ss_pred             cccceeeccCHHHHccCcccccccCCCcccCCCccccCHHHHHHHHHhcCCcceEeeeeCCcccccccccccCcchHHHH
Q 020686          121 TTGFFVVDFTLEELKTLRAKQRYSFRDQQYNGKFPIITFEEYISIALDAQRVVGIYPEMKNPVFINQHVKWADGKKFEDK  200 (322)
Q Consensus       121 ~~g~~i~~~t~~el~~l~~~~~~~~r~~~~~~~~~iptL~e~l~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~~~~~  200 (322)
                        | .|.++|++||++++.              .++|||+|+|+.++   ....++||+|.+             ..++.
T Consensus        64 --~-~i~~~t~~el~~l~~--------------~~iptL~evl~~~~---~~~~l~iEiK~~-------------~~~~~  110 (226)
T d1o1za_          64 --V-KIRDATVSELKELTD--------------GKITTLKEVFENVS---DDKIINIEIKER-------------EAADA  110 (226)
T ss_dssp             --E-EGGGSCHHHHHHHTT--------------TCCCBHHHHHHHSC---TTSEEEEEECCG-------------GGHHH
T ss_pred             --c-eeeecchhhhhhhhh--------------hcchhHHHHHHHhh---cccccchhhccc-------------cccch
Confidence              4 799999999998863              38999999999984   347899999964             35677


Q ss_pred             HHHHHHHcCCCCccccccccCCCEEEeccChhHHHHHhhcCCCCeEEEEeccCccCCCCcccccccccHHHHHHHHh-hc
Q 020686          201 FVDTLKKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTDSPKIFLIDDVDILTEDTNQSYSEITSDAYLNYIKE-YC  279 (322)
Q Consensus       201 v~~~l~~~~~~~~~~~~~~~~~rv~i~Sf~~~~l~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~  279 (322)
                      +++.++++             ++++++||+++.+++++..  .+..+++.....         .  ......+.+.. .+
T Consensus       111 ~~~~~~~~-------------~~vi~~SF~~~~l~~~~~~--~~~~~l~~~~~~---------~--~~~~~~~~~~~~~~  164 (226)
T d1o1za_         111 VLEISKKR-------------KNLIFSSFDLDLLDEKFKG--TKYGYLIDEENY---------G--SIENFVERVEKERP  164 (226)
T ss_dssp             HHHHHTTC-------------CSEEEEESCHHHHHHHCTT--SCEEEECCTTTT---------C--SHHHHHHHHHHHCC
T ss_pred             hhhhhhhc-------------cceeccccchHHHHHHHhc--cceeeEeccccc---------c--hhHHHHHhhhhccc
Confidence            77777664             2799999999988765543  344455433211         0  11112222222 11


Q ss_pred             cccCCCcceeeecCCCCCCCChHHHHHHHHcCCeEEEEeCCCC
Q 020686          280 VGIGPWKDTVVPVANNYSQTPTDLVARAHALDLQIHIGNTTTG  322 (322)
Q Consensus       280 ~~i~~~~~~~~~~~~~~~~~~~~~v~~ah~~Gl~V~vWTvn~~  322 (322)
                      .++++....      .....++++++.+|++|++|++||||+|
T Consensus       165 ~~~~~~~~~------~~~~~~~~~v~~~~~~g~~v~~wTVN~~  201 (226)
T d1o1za_         165 YSLHVPYQA------FELEYAVEVLRSFRKKGIVIFVWTLNDP  201 (226)
T ss_dssp             SEEEEEGGG------GGSHHHHHHHHHHHHTTCEEEEESCCCH
T ss_pred             ccccCchhh------hhhhhhHHHHHHHHHCCCEEEEECCChH
Confidence            122211110      0112357899999999999999999985

>d1vd6a1 c.1.18.3 (A:8-224) Putative glycerophosphodiester phosphodiesterase TTHB141 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: PLC-like phosphodiesterases
family: Glycerophosphoryl diester phosphodiesterase
domain: Putative glycerophosphodiester phosphodiesterase TTHB141
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=8.5e-39  Score=278.05  Aligned_cols=189  Identities=21%  Similarity=0.227  Sum_probs=145.2

Q ss_pred             CeEEeeCCCCCCCchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCCccccCCCCcccccccccccccCCccccc
Q 020686           44 PYNLAHRGSNGEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFLDDTTNIADHKEFADRKRTCMVQGVNTTG  123 (322)
Q Consensus        44 p~iiaHRG~~~~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l~r~t~~~~~~~~~~~~~~~~~~g~~~~g  123 (322)
                      |++|||||+++.+||||++||+.|++.|+++||+||++||||++||+||.++.|+                         
T Consensus         1 P~iiaHRG~~~~~pENT~~a~~~a~~~G~~~iE~DV~~TkDg~~vv~HD~~~~r~-------------------------   55 (217)
T d1vd6a1           1 PLRLGHRGAPLKAKENTLESFRLALEAGLDGVELDVWPTRDGVFAVRHDPDTPLG-------------------------   55 (217)
T ss_dssp             CEEEEETSCTTTSCTTSHHHHHHHHHTTCSEEEEEEEECTTSCEEECSCSEETTE-------------------------
T ss_pred             CeEEECCCCCCCCCchhHHHHHHHHHcCCCEEEEEEEEecCCCEEEecccccCcc-------------------------
Confidence            8999999999999999999999999999999999999999999999999998774                         


Q ss_pred             ceeeccCHHHHccCcccccccCCCcccCCCccccCHHHHHHHHHhcCCcceEeeeeCCcccccccccccCcchHHHHHHH
Q 020686          124 FFVVDFTLEELKTLRAKQRYSFRDQQYNGKFPIITFEEYISIALDAQRVVGIYPEMKNPVFINQHVKWADGKKFEDKFVD  203 (322)
Q Consensus       124 ~~i~~~t~~el~~l~~~~~~~~r~~~~~~~~~iptL~e~l~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~~~~~~~v~~  203 (322)
                       .+.++|++||+.+.               .++|||+|+++.++..+ .+.+++|+|....           .....+..
T Consensus        56 -~i~~~~~~el~~~~---------------~~iptl~e~l~~~~~~~-~~~~~ie~K~~~~-----------~~~~~~~~  107 (217)
T d1vd6a1          56 -PVFQVDYADLKAQE---------------PDLPRLEEVLALKEAFP-QAVFNVELKSFPG-----------LGEEAARR  107 (217)
T ss_dssp             -EGGGSCHHHHHHHS---------------TTCCBHHHHHGGGGTCT-TCEEEEEECCCTT-----------SHHHHHHH
T ss_pred             -cccchhHHHHhhhh---------------ccCCCHHHHHHHHHhCC-CceeeeeeccCcc-----------hhHHHHHH
Confidence             47899999998543               37999999999886543 5789999997531           12233344


Q ss_pred             HHHHcCCCCccccccccCCCEEEeccChhHHHHHhhcCCCCe-EEEEeccCccCCCCcccccccccHHHHHHHHhhcccc
Q 020686          204 TLKKYGYKGAYMSKEWLKQPIFIQSFAPTSLVYISNKTDSPK-IFLIDDVDILTEDTNQSYSEITSDAYLNYIKEYCVGI  282 (322)
Q Consensus       204 ~l~~~~~~~~~~~~~~~~~rv~i~Sf~~~~l~~~~~~~~~~~-v~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i  282 (322)
                      +++.++..          ++++++||++..+.+++++.|... .++.....          ..        .+..    .
T Consensus       108 l~~~~~~~----------~~v~~~Sf~~~~l~~~~~~~p~~~~~~l~~~~~----------~~--------~~~~----~  155 (217)
T d1vd6a1         108 LAALLRGR----------EGVWVSSFDPLALLALRKAAPGLPLGFLMAEDH----------SA--------LLPC----L  155 (217)
T ss_dssp             HHHHTTTC----------SSEEEEESCHHHHHHHHHHCTTSCEEEEESSCC----------GG--------GGGG----S
T ss_pred             HHHHhhcc----------ceEEEeeccHHHHHHHHHHhccCceeeeccccc----------cc--------hhhh----c
Confidence            44454433          389999999999999999877644 44443221          00        0111    1


Q ss_pred             CCCcceeeecCCCCCCCChHHHHHHHHcCCeEEEEeCCCC
Q 020686          283 GPWKDTVVPVANNYSQTPTDLVARAHALDLQIHIGNTTTG  322 (322)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~v~~ah~~Gl~V~vWTvn~~  322 (322)
                      .+  ..+.+   ++..+++++++.+|++|++|++||||++
T Consensus       156 ~~--~~i~~---~~~~~~~~~v~~~~~~g~~v~~wTvn~~  190 (217)
T d1vd6a1         156 GV--EAVHP---HHALVTEEAVAGWRKRGLFVVAWTVNEE  190 (217)
T ss_dssp             CC--SEEEE---BGGGCCHHHHHHHHHTTCEEEEECCCCH
T ss_pred             cc--eEEcc---hHhHHHHHHHHHHHHCCCEEEEECCCCH
Confidence            11  12222   4567799999999999999999999985

>d1qasa3 c.1.18.1 (A:299-625) Phospholipase C isozyme D1 (PLC-D1) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: PLC-like phosphodiesterases
family: Mammalian PLC
domain: Phospholipase C isozyme D1 (PLC-D1)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.11  E-value=0.00047  Score=61.33  Aligned_cols=49  Identities=20%  Similarity=0.208  Sum_probs=40.4

Q ss_pred             EeeCCCC---CCCchhHHHHHHHHHHcCCCEEEeeeeEcCCCeEEEEeCCCC
Q 020686           47 LAHRGSN---GEFPEETAAAYMRAIEEGADFIETDILASKDGVLICHHDVFL   95 (322)
Q Consensus        47 iaHRG~~---~~~pENT~~Af~~A~~~G~d~iE~DV~lTkDg~~Vv~HD~~l   95 (322)
                      -+|+-.-   -..-.-++.+|..|++.||+.||+||+--.||+|||.|..++
T Consensus        11 SShNtyl~g~Ql~~~ss~~~~~~~l~~G~R~ielD~w~g~d~ePvV~HG~t~   62 (327)
T d1qasa3          11 SSHNTYLLEDQLTGPSSTEAYIRALCKGCRCLELDCWDGPNQEPIIYHGYTF   62 (327)
T ss_dssp             EESSTTBSSCSSSCCBCHHHHHHHHHTTCCEEEEEEECCGGGCCEESCTTSC
T ss_pred             ccccccccCCcccCcccHHHHHHHHHhCCcEEEEEeecCCCCCeEEeeCCcc
Confidence            3677552   244556799999999999999999999989999999997654

>d2zkmx4 c.1.18.1 (X:312-660) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: PLC-like phosphodiesterases
family: Mammalian PLC
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.57  E-value=0.0025  Score=56.95  Aligned_cols=48  Identities=19%  Similarity=0.165  Sum_probs=37.7

Q ss_pred             eeCCCC---CCCchhHHHHHHHHHHcCCCEEEeeeeE--cCCCeEEEEeCCCC
Q 020686           48 AHRGSN---GEFPEETAAAYMRAIEEGADFIETDILA--SKDGVLICHHDVFL   95 (322)
Q Consensus        48 aHRG~~---~~~pENT~~Af~~A~~~G~d~iE~DV~l--TkDg~~Vv~HD~~l   95 (322)
                      +|+-.-   -..-.-++.+|..|++.||++||+||+=  +.||+|||.|..++
T Consensus        15 ShNtyl~g~q~~~~~s~~~~~~~l~~G~R~~eldi~dG~~~d~~Pvv~hg~t~   67 (349)
T d2zkmx4          15 SHNTYLTAGQFSGLSSAEMYRQVLLSGCRCVELDCWKGKPPDEEPIITHGFTM   67 (349)
T ss_dssp             BSSTTBSSCSSSSCBCTHHHHHHHHTTCCEEEEEEECCCTTCCSCEECCTTSS
T ss_pred             cccccccCCcCCCcccHHHHHHHHHhCCcEEEEEecCCCCCCCCcEEeeCCee
Confidence            565441   1344567999999999999999999995  46899999997554