Citrus Sinensis ID: 020710
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 322 | 2.2.26 [Sep-21-2011] | |||||||
| Q55467 | 230 | Magnesium-protoporphyrin | N/A | no | 0.686 | 0.960 | 0.557 | 1e-70 | |
| P26236 | 224 | Magnesium-protoporphyrin | yes | no | 0.658 | 0.946 | 0.269 | 5e-15 | |
| A9KGL7 | 234 | 3-demethylubiquinone-9 3- | yes | no | 0.425 | 0.585 | 0.284 | 6e-09 | |
| B6J5Y2 | 234 | 3-demethylubiquinone-9 3- | yes | no | 0.378 | 0.521 | 0.304 | 8e-09 | |
| Q820B5 | 234 | 3-demethylubiquinone-9 3- | yes | no | 0.378 | 0.521 | 0.304 | 1e-08 | |
| A9NBI0 | 234 | 3-demethylubiquinone-9 3- | yes | no | 0.378 | 0.521 | 0.304 | 1e-08 | |
| B6J1W2 | 234 | 3-demethylubiquinone-9 3- | yes | no | 0.378 | 0.521 | 0.304 | 1e-08 | |
| Q6FFY1 | 238 | 3-demethylubiquinone-9 3- | yes | no | 0.263 | 0.357 | 0.370 | 6e-06 | |
| A7MPA9 | 243 | 3-demethylubiquinone-9 3- | yes | no | 0.357 | 0.473 | 0.3 | 6e-06 | |
| B0UUV6 | 238 | 3-demethylubiquinone-9 3- | yes | no | 0.251 | 0.340 | 0.365 | 9e-06 |
| >sp|Q55467|CHLM_SYNY3 Magnesium-protoporphyrin O-methyltransferase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=chlM PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 267 bits (682), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 127/228 (55%), Positives = 168/228 (73%), Gaps = 7/228 (3%)
Query: 93 DKEVVREYFNNSGFQRWKKIYGETDDVNRVQLDIRLGHSKTVENTMQMLNDEGSLKGIAV 152
DK +VR+YFN++GF RW++IYG+ VN VQ DIR+GH +TV++ + L +G+L G+ V
Sbjct: 8 DKTIVRDYFNSTGFDRWRRIYGD-GQVNFVQKDIRVGHQQTVDSVVAWLVADGNLPGLLV 66
Query: 153 CDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKD 212
CDAGCG GSL+IPLA+ GA+V SDIS MV EA++KA+E L N P F +D
Sbjct: 67 CDAGCGVGSLSIPLAQAGALVYGSDISEKMVGEAQQKAQEVLAYGN------QPTFMTQD 120
Query: 213 LESLDGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGEL 272
L L GKYDTV+CLDVLIHYP +A MI+HLASLA++RLILSFAPKT +LK++G L
Sbjct: 121 LAQLGGKYDTVICLDVLIHYPTEEASAMISHLASLADRRLILSFAPKTLGLTVLKKIGGL 180
Query: 273 FPGPSKATRAYLHAEADVERALQKVGWKIRKRGLITTQFYFARLVEAV 320
FPGPSK TRAY H EAD+ + L G+ I + G+ +T+FY++R++EAV
Sbjct: 181 FPGPSKTTRAYQHKEADIRKILGDNGFSIARTGMTSTRFYYSRILEAV 228
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Converts Mg-protoporphyrin IX to Mg-protoporphyrin IX methylester using S-adenosyl-L-methionine as a cofactor. Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 1 |
| >sp|P26236|BCHM_RHOCA Magnesium-protoporphyrin O-methyltransferase OS=Rhodobacter capsulatus GN=bchM PE=1 SV=1 | Back alignment and function description |
|---|
Score = 82.4 bits (202), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 61/226 (26%), Positives = 103/226 (45%), Gaps = 14/226 (6%)
Query: 97 VREYFNNSGFQRWKKIYGETDDVNRVQLDIRLGHSKTVENTMQMLNDEGSLKGIAVCDAG 156
V YF+ + + W ++ + V++V+ +R G + L D+ L G V DAG
Sbjct: 12 VEHYFDRTATRAWARLTTADEKVSKVRQTVREGRDTMRAVMLSRLPDD--LTGCRVMDAG 69
Query: 157 CGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDL-ES 215
CGTG + LA++GA V A DIS ++ A+ + EL F V D+ +
Sbjct: 70 CGTGLTTVELARRGADVVAVDISPQLIDIAKDRLPPELRGKVS--------FHVGDMADP 121
Query: 216 LDGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPG 275
G++D VV +D LI+Y ++ L ++ + APKT + +G+LFP
Sbjct: 122 ALGQFDYVVAMDSLIYYRAPDIGRVLTELGKRTHSAIVFTVAPKTAFLMAFWWLGKLFPR 181
Query: 276 PSKATRAYLHAEADVERALQKVGWKIRKRGLITTQFYFARLVEAVP 321
+++ HA ++R G + K + FY + +E P
Sbjct: 182 SNRSPVMIPHALDKLQR---HAGDSLIKIDRVARGFYISECLEYRP 224
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Converts Mg-protoporphyrin IX to Mg-protoporphyrin IX methylester using S-adenosyl-L-methionine as a cofactor. Rhodobacter capsulatus (taxid: 1061) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 1 |
| >sp|A9KGL7|UBIG_COXBN 3-demethylubiquinone-9 3-methyltransferase OS=Coxiella burnetii (strain Dugway 5J108-111) GN=ubiG PE=3 SV=1 | Back alignment and function description |
|---|
Score = 62.0 bits (149), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 78/158 (49%), Gaps = 21/158 (13%)
Query: 138 MQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLAD 197
++ + + +LKG V D GCG G L+ LAK GAIV+ D+S +++ A+ AE++ L
Sbjct: 41 LKYIEQQITLKGKHVLDVGCGGGLLSEALAKHGAIVTGVDMSESLIDVAKNHAEQQQLNI 100
Query: 198 NGGEAPVMPKFEVKDLESLDG---KYDTVVCLDVLIHYPQSKADGMIAHLASLAEK--RL 252
N ++ +D+E L ++D + C+++L H P + MI + A+L + +L
Sbjct: 101 N---------YQCQDIEILTKDAQRFDIITCMELLEHVPDPQR--MIKNCAALIKPGGKL 149
Query: 253 ILSFAPKTFYYDLLKRVG-----ELFPGPSKATRAYLH 285
S + F L VG L P + ++H
Sbjct: 150 FFSTINRNFKAYLYTIVGAEYVFNLLPKGTHDYAQFIH 187
|
Non-specific O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway. Coxiella burnetii (strain Dugway 5J108-111) (taxid: 434922) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 2 EC: 2 |
| >sp|B6J5Y2|UBIG_COXB1 3-demethylubiquinone-9 3-methyltransferase OS=Coxiella burnetii (strain CbuK_Q154) GN=ubiG PE=3 SV=1 | Back alignment and function description |
|---|
Score = 61.6 bits (148), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 72/138 (52%), Gaps = 16/138 (11%)
Query: 138 MQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLAD 197
++ + + +LKG V D GCG G L+ LAK GAIV+ D+S +++ A+ AE++ L
Sbjct: 41 LKYIEQQITLKGKHVLDVGCGGGLLSEALAKHGAIVTGVDMSESLIDVAKNHAEQQQLNI 100
Query: 198 NGGEAPVMPKFEVKDLESLDG---KYDTVVCLDVLIHYPQSKADGMIAHLASLAEK--RL 252
N ++ +D+E L ++D + C+++L H P + MI + A+L + +L
Sbjct: 101 N---------YQCQDIEILTKDAQRFDIITCMELLEHVPDPQR--MIKNCAALIKPGGKL 149
Query: 253 ILSFAPKTFYYDLLKRVG 270
S + F L VG
Sbjct: 150 FFSTINRNFKAYLYTIVG 167
|
Non-specific O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway. Coxiella burnetii (strain CbuK_Q154) (taxid: 434924) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 2 EC: 2 |
| >sp|Q820B5|UBIG_COXBU 3-demethylubiquinone-9 3-methyltransferase OS=Coxiella burnetii (strain RSA 493 / Nine Mile phase I) GN=ubiG PE=3 SV=1 | Back alignment and function description |
|---|
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 72/138 (52%), Gaps = 16/138 (11%)
Query: 138 MQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLAD 197
++ + + +LKG V D GCG G L+ LAK GAIV+ D+S +++ A+ AE++ L
Sbjct: 41 LKYIEQQITLKGKHVLDVGCGGGLLSEALAKHGAIVTGVDMSESLIDVAKNHAEQQQLNI 100
Query: 198 NGGEAPVMPKFEVKDLESLDG---KYDTVVCLDVLIHYPQSKADGMIAHLASLAEK--RL 252
N ++ +D+E L ++D + C+++L H P + MI + A+L + +L
Sbjct: 101 N---------YQCQDIEILTKDAQRFDIITCMELLEHVPDPQR--MIKNCAALIKPGGKL 149
Query: 253 ILSFAPKTFYYDLLKRVG 270
S + F L VG
Sbjct: 150 FFSTINRNFKAYLYTIVG 167
|
Non-specific O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway. Coxiella burnetii (strain RSA 493 / Nine Mile phase I) (taxid: 227377) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 2 EC: 2 |
| >sp|A9NBI0|UBIG_COXBR 3-demethylubiquinone-9 3-methyltransferase OS=Coxiella burnetii (strain RSA 331 / Henzerling II) GN=ubiG PE=3 SV=1 | Back alignment and function description |
|---|
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 72/138 (52%), Gaps = 16/138 (11%)
Query: 138 MQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLAD 197
++ + + +LKG V D GCG G L+ LAK GAIV+ D+S +++ A+ AE++ L
Sbjct: 41 LKYIEQQITLKGKHVLDVGCGGGLLSEALAKHGAIVTGVDMSESLIDVAKNHAEQQQLNI 100
Query: 198 NGGEAPVMPKFEVKDLESLDG---KYDTVVCLDVLIHYPQSKADGMIAHLASLAEK--RL 252
N ++ +D+E L ++D + C+++L H P + MI + A+L + +L
Sbjct: 101 N---------YQCQDIEILTKDAQRFDIITCMELLEHVPDPQR--MIKNCAALIKPGGKL 149
Query: 253 ILSFAPKTFYYDLLKRVG 270
S + F L VG
Sbjct: 150 FFSTINRNFKAYLYTIVG 167
|
Non-specific O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway. Coxiella burnetii (strain RSA 331 / Henzerling II) (taxid: 360115) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 2 EC: 2 |
| >sp|B6J1W2|UBIG_COXB2 3-demethylubiquinone-9 3-methyltransferase OS=Coxiella burnetii (strain CbuG_Q212) GN=ubiG PE=3 SV=1 | Back alignment and function description |
|---|
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 72/138 (52%), Gaps = 16/138 (11%)
Query: 138 MQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLAD 197
++ + + +LKG V D GCG G L+ LAK GAIV+ D+S +++ A+ AE++ L
Sbjct: 41 LKYIEQQITLKGKHVLDVGCGGGLLSEALAKHGAIVTGVDMSESLIDVAKNHAEQQQLNI 100
Query: 198 NGGEAPVMPKFEVKDLESLDG---KYDTVVCLDVLIHYPQSKADGMIAHLASLAEK--RL 252
N ++ +D+E L ++D + C+++L H P + MI + A+L + +L
Sbjct: 101 N---------YQCQDIEILTKDAQRFDIITCMELLEHVPDPQR--MIKNCAALIKPGGKL 149
Query: 253 ILSFAPKTFYYDLLKRVG 270
S + F L VG
Sbjct: 150 FFSTINRNFKAYLYTIVG 167
|
Non-specific O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway. Coxiella burnetii (strain CbuG_Q212) (taxid: 434923) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 2 EC: 2 |
| >sp|Q6FFY1|UBIG_ACIAD 3-demethylubiquinone-9 3-methyltransferase OS=Acinetobacter sp. (strain ADP1) GN=ubiG PE=3 SV=1 | Back alignment and function description |
|---|
Score = 52.0 bits (123), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 50/89 (56%), Gaps = 4/89 (4%)
Query: 145 GSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPV 204
G L G V D GCG G LA +A++GA V D+ A + AR AE+E +A+ E
Sbjct: 47 GGLAGKKVLDVGCGGGILAESMARRGADVLGIDMGEAPLNVARLHAEQEQVANI--EYRQ 104
Query: 205 MPKFEVKDLESLDGKYDTVVCLDVLIHYP 233
+P E+ ++ G+YD V C++++ H P
Sbjct: 105 IPVEELAQEQA--GQYDIVTCMEMMEHVP 131
|
Non-specific O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway. Acinetobacter sp. (strain ADP1) (taxid: 62977) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 2 EC: 2 |
| >sp|A7MPA9|UBIG_CROS8 3-demethylubiquinone-9 3-methyltransferase OS=Cronobacter sakazakii (strain ATCC BAA-894) GN=ubiG PE=3 SV=1 | Back alignment and function description |
|---|
Score = 52.0 bits (123), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 61/130 (46%), Gaps = 15/130 (11%)
Query: 108 RWKKIYGETDDVNRVQLDIRLGHSKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLA 167
RW GE ++R+ +RLG+ + G L G V D GCG G L+ +A
Sbjct: 26 RWWDTEGEFKPLHRIN-PLRLGY---------IAERAGGLFGKKVLDVGCGGGILSESMA 75
Query: 168 KQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESLDGKYDTVVCLD 227
++GA V+ D+ A +A AR A E +G E + + + G YD V C++
Sbjct: 76 REGANVTGLDMGAEPLAVARLHALE-----SGVELNYVQQTVEEHAAQHAGAYDVVTCME 130
Query: 228 VLIHYPQSKA 237
+L H P ++
Sbjct: 131 MLEHVPDPRS 140
|
Non-specific O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway. Cronobacter sakazakii (strain ATCC BAA-894) (taxid: 290339) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 2 EC: 2 |
| >sp|B0UUV6|UBIG_HAES2 3-demethylubiquinone-9 3-methyltransferase OS=Haemophilus somnus (strain 2336) GN=ubiG PE=3 SV=1 | Back alignment and function description |
|---|
Score = 51.6 bits (122), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 152 VCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVK 211
V D GCG G L+ +AKQGAIV+ D++ A + AR A+E+ L + + V +F K
Sbjct: 52 VLDVGCGGGILSEAMAKQGAIVTGIDMTVAPLEVARLHAKEQGLVIDYQQITV-EEFLQK 110
Query: 212 DLESLDGKYDTVVCLDVLIHYP 233
K+D + C+++L H P
Sbjct: 111 QTALYAEKFDVITCMEMLEHVP 132
|
Non-specific O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway. Haemophilus somnus (strain 2336) (taxid: 228400) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 2 EC: 2 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 322 | ||||||
| 225456483 | 328 | PREDICTED: magnesium-protoporphyrin O-me | 0.996 | 0.978 | 0.799 | 1e-143 | |
| 356527506 | 325 | PREDICTED: magnesium-protoporphyrin O-me | 0.944 | 0.935 | 0.802 | 1e-141 | |
| 356513467 | 324 | PREDICTED: magnesium-protoporphyrin O-me | 0.934 | 0.929 | 0.796 | 1e-139 | |
| 7839365 | 325 | S-adenosyl-L-methionine Mg-protoporphyri | 0.987 | 0.978 | 0.759 | 1e-135 | |
| 307136012 | 316 | magnesium-protoporphyrin O-methyltransfe | 0.965 | 0.984 | 0.743 | 1e-131 | |
| 449440494 | 317 | PREDICTED: magnesium-protoporphyrin O-me | 0.922 | 0.936 | 0.772 | 1e-130 | |
| 449520353 | 317 | PREDICTED: magnesium-protoporphyrin O-me | 0.922 | 0.936 | 0.769 | 1e-130 | |
| 255540057 | 315 | Magnesium-protoporphyrin O-methyltransfe | 0.965 | 0.987 | 0.754 | 1e-128 | |
| 357520605 | 324 | Magnesium-protoporphyrin O-methyltransfe | 0.978 | 0.972 | 0.729 | 1e-127 | |
| 15234905 | 312 | magnesium-protoporphyrin IX methyltransf | 0.841 | 0.868 | 0.773 | 1e-124 |
| >gi|225456483|ref|XP_002280872.1| PREDICTED: magnesium-protoporphyrin O-methyltransferase [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 512 bits (1319), Expect = e-143, Method: Compositional matrix adjust.
Identities = 263/329 (79%), Positives = 286/329 (86%), Gaps = 8/329 (2%)
Query: 1 MAFTASLSSHIPFYNNSSTLSPNRGK-TSKTTPLLCKPVAAIPPLSTATTNS---VP-DL 55
MA + + S + F N+ T SPN K TT + ++AIPP+STA S VP D
Sbjct: 1 MALSPTFSPPVCFKKNT-TFSPNTPKFHKPTTKTPTQTLSAIPPISTAADLSAVAVPFDG 59
Query: 56 STIAVISGGSIAALAAVLSLVDPERRRQLQAEEVGGGDKEVVREYFNNSGFQRWKKIYGE 115
+T+AVI GGS+AALAAVLSL DPERRRQLQAEEVGGGDKEVV+EYFNNSGFQRWKKIYGE
Sbjct: 60 TTLAVIGGGSVAALAAVLSLTDPERRRQLQAEEVGGGDKEVVKEYFNNSGFQRWKKIYGE 119
Query: 116 TDDVNRVQLDIRLGHSKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSA 175
TDDVN+VQLDIRLGHSKTVEN M+ML DE SL+G+ VCDAGCGTG L+IPLAKQGAIV+A
Sbjct: 120 TDDVNKVQLDIRLGHSKTVENVMKMLTDERSLEGVTVCDAGCGTGCLSIPLAKQGAIVTA 179
Query: 176 SDISAAMVAEARKKAEEELLA--DNGGEAPVMPKFEVKDLESLDGKYDTVVCLDVLIHYP 233
SDISAAMVAEA K+A EELL+ D+G APVMPKFEVKDLESLDGKY TVVCLDVLIHYP
Sbjct: 180 SDISAAMVAEAEKQAREELLSGRDDGLPAPVMPKFEVKDLESLDGKYHTVVCLDVLIHYP 239
Query: 234 QSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADVERA 293
QSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADVERA
Sbjct: 240 QSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADVERA 299
Query: 294 LQKVGWKIRKRGLITTQFYFARLVEAVPA 322
LQKVGW+IRKRGLITTQFYFA+LVEAVPA
Sbjct: 300 LQKVGWRIRKRGLITTQFYFAKLVEAVPA 328
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356527506|ref|XP_003532350.1| PREDICTED: magnesium-protoporphyrin O-methyltransferase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 506 bits (1304), Expect = e-141, Method: Compositional matrix adjust.
Identities = 248/309 (80%), Positives = 268/309 (86%), Gaps = 5/309 (1%)
Query: 16 NSSTLSPNRGKTSKTTPLLCKPVAAIPPLSTATTNSVP---DLSTIAVISGGSIAALAAV 72
N +T+S T PL P AIPPLSTAT V D +TIAV+SGG +AALAAV
Sbjct: 18 NRTTISTRFSHTPSKPPL--SPAFAIPPLSTATATDVSGVIDGTTIAVVSGGFVAALAAV 75
Query: 73 LSLVDPERRRQLQAEEVGGGDKEVVREYFNNSGFQRWKKIYGETDDVNRVQLDIRLGHSK 132
LSL DPERRRQ+QAEEVGGGDKEVVREYFNNSGFQRWKKIYG+TD+VNRVQ DIRLGH+K
Sbjct: 76 LSLTDPERRRQMQAEEVGGGDKEVVREYFNNSGFQRWKKIYGDTDEVNRVQRDIRLGHAK 135
Query: 133 TVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEE 192
TVENT+ ML DEGSL+GI VCDAGCGTGSL+IPLAK+GA+V ASDISAAMVAEA K+A+E
Sbjct: 136 TVENTLSMLKDEGSLQGITVCDAGCGTGSLSIPLAKEGAVVFASDISAAMVAEAEKQAKE 195
Query: 193 ELLADNGGEAPVMPKFEVKDLESLDGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRL 252
+L+ G PVMPKF VKDLESLDGKYDTVVCLDVLIHYPQSKADGMIAHLASLA KRL
Sbjct: 196 QLVTSEDGSGPVMPKFVVKDLESLDGKYDTVVCLDVLIHYPQSKADGMIAHLASLANKRL 255
Query: 253 ILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQKVGWKIRKRGLITTQFY 312
ILSFAPKTFYYDLLKRVGELFPGPSKATRAYLH+EADVERALQKVGW IRKRGL TTQFY
Sbjct: 256 ILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHSEADVERALQKVGWTIRKRGLTTTQFY 315
Query: 313 FARLVEAVP 321
FARL+EAVP
Sbjct: 316 FARLIEAVP 324
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356513467|ref|XP_003525435.1| PREDICTED: magnesium-protoporphyrin O-methyltransferase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 499 bits (1284), Expect = e-139, Method: Compositional matrix adjust.
Identities = 246/309 (79%), Positives = 264/309 (85%), Gaps = 8/309 (2%)
Query: 21 SPNRGKTS-----KTTPLLCKPVAAIPPLSTATTNSVP---DLSTIAVISGGSIAALAAV 72
+PNR S K L P AIPPLSTAT V D +TIAV+SGG +AALAAV
Sbjct: 15 NPNRTAISTRFSHKPPKLPLSPAFAIPPLSTATAADVSGAIDGTTIAVVSGGFVAALAAV 74
Query: 73 LSLVDPERRRQLQAEEVGGGDKEVVREYFNNSGFQRWKKIYGETDDVNRVQLDIRLGHSK 132
LSL DPERRRQLQAEEVGGGDKEVVREYFNNSGFQRWKKIYG+TD+VNRVQ DIRLGH+K
Sbjct: 75 LSLTDPERRRQLQAEEVGGGDKEVVREYFNNSGFQRWKKIYGDTDEVNRVQRDIRLGHAK 134
Query: 133 TVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEE 192
TVENT+ ML DEGSL+G+ VCDAGCGTGSL+IPLAK+GA+V ASDISAAMVAEA K+A+E
Sbjct: 135 TVENTLSMLKDEGSLQGVTVCDAGCGTGSLSIPLAKEGAVVFASDISAAMVAEAEKQAKE 194
Query: 193 ELLADNGGEAPVMPKFEVKDLESLDGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRL 252
+L G PVMPKF VKDLESLDGKYDTVVCLDVLIHYPQ KADGMIAHLASLA RL
Sbjct: 195 QLATSEDGSVPVMPKFVVKDLESLDGKYDTVVCLDVLIHYPQHKADGMIAHLASLANNRL 254
Query: 253 ILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQKVGWKIRKRGLITTQFY 312
ILSFAPKTFYYDLLKRVGELFPGPSKATRAYLH+EADVERALQKVGW IRKRGL TTQFY
Sbjct: 255 ILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHSEADVERALQKVGWTIRKRGLTTTQFY 314
Query: 313 FARLVEAVP 321
FARL+EAVP
Sbjct: 315 FARLIEAVP 323
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|7839365|gb|AAF70243.1|AF213968_1 S-adenosyl-L-methionine Mg-protoporphyrin IX methyltranserase [Nicotiana tabacum] | Back alignment and taxonomy information |
|---|
Score = 488 bits (1256), Expect = e-135, Method: Compositional matrix adjust.
Identities = 250/329 (75%), Positives = 282/329 (85%), Gaps = 11/329 (3%)
Query: 1 MAFTASLSSHIPF-YNNSSTLSPNRGKTSKTTPLLCKPVAAIPPLSTATTNSVP----DL 55
MAF++ L S + F N + + P K ++ +C AIPPLSTAT S D
Sbjct: 1 MAFSSPLFSPVNFALNPNPQIHPKCTKPNRRNFSVC----AIPPLSTATDISAVTGPLDG 56
Query: 56 STIAVISGGSIAALAAVLSLVDPERRRQLQAEEVGGGDKEVVREYFNNSGFQRWKKIYGE 115
+T+AV+ GGS+AALAA+LSL DPERRRQLQAEEVGGGDKEVVREYFNN+GFQRWKKIYG+
Sbjct: 57 TTLAVLGGGSVAALAAILSLADPERRRQLQAEEVGGGDKEVVREYFNNNGFQRWKKIYGD 116
Query: 116 TDDVNRVQLDIRLGHSKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSA 175
TDDVN+VQLDIRLGHSKTVEN M+ML +EGSL+G+ VCDAGCGTG L+IPLAK+GA+VSA
Sbjct: 117 TDDVNKVQLDIRLGHSKTVENVMKMLTEEGSLQGVTVCDAGCGTGCLSIPLAKEGAVVSA 176
Query: 176 SDISAAMVAEARKKAEEELLADNGGE--APVMPKFEVKDLESLDGKYDTVVCLDVLIHYP 233
SDISA+MVAEA+K+A+EEL D + APVMPKFEVKDLESLDGKYDTVVCLDV+IHYP
Sbjct: 177 SDISASMVAEAQKQAQEELFKDKDDQSPAPVMPKFEVKDLESLDGKYDTVVCLDVMIHYP 236
Query: 234 QSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADVERA 293
QSKADGMIAHLASLAE RLILSFAPKTFYYDLLKR+GELFPGPSKATRAYLHAEADVERA
Sbjct: 237 QSKADGMIAHLASLAENRLILSFAPKTFYYDLLKRIGELFPGPSKATRAYLHAEADVERA 296
Query: 294 LQKVGWKIRKRGLITTQFYFARLVEAVPA 322
LQK GWKIRKRGLI TQFYFA+L+EAVPA
Sbjct: 297 LQKAGWKIRKRGLIATQFYFAKLIEAVPA 325
|
Source: Nicotiana tabacum Species: Nicotiana tabacum Genus: Nicotiana Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|307136012|gb|ADN33868.1| magnesium-protoporphyrin O-methyltransferase [Cucumis melo subsp. melo] | Back alignment and taxonomy information |
|---|
Score = 472 bits (1215), Expect = e-131, Method: Compositional matrix adjust.
Identities = 243/327 (74%), Positives = 272/327 (83%), Gaps = 16/327 (4%)
Query: 1 MAFTASLSSHIPFYNNSST-----LSPNRGKTSKTTPLLCKPVAAIPPLSTATTNSVPDL 55
M+ +AS + F+ +S++ LSP K K + L V+A+ AT + D
Sbjct: 1 MSHSASRYLTLCFHPDSTSNSRFFLSPTPIKLIKFSRTLNLNVSAV-----ATELPIVDG 55
Query: 56 STIAVISGGSIAALAAVLSLVDPERRRQLQAEEVGGGDKEVVREYFNNSGFQRWKKIYGE 115
+TIA I GGS+AALAAVLSL DPERRR+LQAEEVGGGDK+VV+EYFNNSGFQRWKKIYGE
Sbjct: 56 ATIAAIGGGSVAALAAVLSLTDPERRRRLQAEEVGGGDKDVVKEYFNNSGFQRWKKIYGE 115
Query: 116 TDDVNRVQLDIRLGHSKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSA 175
TDDVNRVQ DIRLGHSKTVEN M ML DEG L+G+ VCDAGCGTGSL+IPLAK+GA V A
Sbjct: 116 TDDVNRVQRDIRLGHSKTVENVMAMLKDEGPLRGVTVCDAGCGTGSLSIPLAKEGAKVFA 175
Query: 176 SDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESLDGKYDTVVCLDVLIHYPQS 235
SDISAAMVAEA KA+EE+ GG VMPKFEVKDLESL+GKYDTVVCLDVLIHYPQ+
Sbjct: 176 SDISAAMVAEAENKAKEEV---KGG---VMPKFEVKDLESLEGKYDTVVCLDVLIHYPQN 229
Query: 236 KADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQ 295
KADGMIAHLASLAEKRLI+SFAPKTFYYDLLKRVGELFPGPSKATRAYLH+EADVE AL+
Sbjct: 230 KADGMIAHLASLAEKRLIISFAPKTFYYDLLKRVGELFPGPSKATRAYLHSEADVETALR 289
Query: 296 KVGWKIRKRGLITTQFYFARLVEAVPA 322
+VGWKIRKRGLI+TQFYFA LVEAVPA
Sbjct: 290 RVGWKIRKRGLISTQFYFATLVEAVPA 316
|
Source: Cucumis melo subsp. melo Species: Cucumis melo Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449440494|ref|XP_004138019.1| PREDICTED: magnesium-protoporphyrin O-methyltransferase-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 472 bits (1214), Expect = e-130, Method: Compositional matrix adjust.
Identities = 238/308 (77%), Positives = 264/308 (85%), Gaps = 11/308 (3%)
Query: 15 NNSSTLSPNRGKTSKTTPLLCKPVAAIPPLSTATTNSVPDLSTIAVISGGSIAALAAVLS 74
N+ LSP K K + L V+A+ AT + D +TIA I GGS+AALAAVLS
Sbjct: 21 NSRFFLSPTPIKLIKFSRTLNLNVSAV-----ATELPIVDGATIAAIGGGSVAALAAVLS 75
Query: 75 LVDPERRRQLQAEEVGGGDKEVVREYFNNSGFQRWKKIYGETDDVNRVQLDIRLGHSKTV 134
L DPERRR+LQAEEVGGGDK+VV+EYFNNSGFQRWKKIYGETDDVNRVQ DIRLGHSKTV
Sbjct: 76 LTDPERRRRLQAEEVGGGDKDVVKEYFNNSGFQRWKKIYGETDDVNRVQRDIRLGHSKTV 135
Query: 135 ENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEEL 194
EN M ML DEGSL+G+ VCDAGCGTGSL+IPLAK+GA+V ASDISAAMVAEA KA+EE+
Sbjct: 136 ENVMAMLKDEGSLRGVTVCDAGCGTGSLSIPLAKEGAMVFASDISAAMVAEAENKAKEEV 195
Query: 195 LADNGGEAPVMPKFEVKDLESLDGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLIL 254
+ GG V+PKFEVKDLESL+GKYDTVVCLDVLIHYPQ+KADGMIAHLASLAEKRLI+
Sbjct: 196 V---GG---VVPKFEVKDLESLEGKYDTVVCLDVLIHYPQNKADGMIAHLASLAEKRLII 249
Query: 255 SFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQKVGWKIRKRGLITTQFYFA 314
SFAPKTFYYDLLKRVGELFPGPSKATRAYLH+EADVE AL++ GWKIRKRGLI+TQFYFA
Sbjct: 250 SFAPKTFYYDLLKRVGELFPGPSKATRAYLHSEADVETALRRAGWKIRKRGLISTQFYFA 309
Query: 315 RLVEAVPA 322
LVEAVPA
Sbjct: 310 TLVEAVPA 317
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449520353|ref|XP_004167198.1| PREDICTED: magnesium-protoporphyrin O-methyltransferase-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 471 bits (1212), Expect = e-130, Method: Compositional matrix adjust.
Identities = 237/308 (76%), Positives = 264/308 (85%), Gaps = 11/308 (3%)
Query: 15 NNSSTLSPNRGKTSKTTPLLCKPVAAIPPLSTATTNSVPDLSTIAVISGGSIAALAAVLS 74
N+ LSP K K + L V+A+ AT + D +TIA I GGS+AALAAVLS
Sbjct: 21 NSRFFLSPTPIKLIKFSRTLNLNVSAV-----ATELPIVDGATIAAIGGGSVAALAAVLS 75
Query: 75 LVDPERRRQLQAEEVGGGDKEVVREYFNNSGFQRWKKIYGETDDVNRVQLDIRLGHSKTV 134
L DPERRR+LQAEEVGGGDK+VV+EYFNNSGFQRWKKIYGETDDVNRVQ DIRLGHSKTV
Sbjct: 76 LTDPERRRRLQAEEVGGGDKDVVKEYFNNSGFQRWKKIYGETDDVNRVQRDIRLGHSKTV 135
Query: 135 ENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEEL 194
EN M ML DEGSL+G+ VCDAGCGTGSL+IPLAK+GA+V ASDISAAMVAEA KA+EE+
Sbjct: 136 ENVMAMLKDEGSLRGVTVCDAGCGTGSLSIPLAKEGAMVFASDISAAMVAEAENKAKEEV 195
Query: 195 LADNGGEAPVMPKFEVKDLESLDGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLIL 254
+ GG V+PKFEVKDLESL+GKYDTVVCLDVLIHYPQ+KADGMIAHLASLAEKRLI+
Sbjct: 196 V---GG---VVPKFEVKDLESLEGKYDTVVCLDVLIHYPQNKADGMIAHLASLAEKRLII 249
Query: 255 SFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQKVGWKIRKRGLITTQFYFA 314
SFAPKTFYYDLLKRVGELFPGPSKATRAYLH+EADVE AL++ GWKIRKRGL++TQFYFA
Sbjct: 250 SFAPKTFYYDLLKRVGELFPGPSKATRAYLHSEADVETALRRAGWKIRKRGLVSTQFYFA 309
Query: 315 RLVEAVPA 322
LVEAVPA
Sbjct: 310 TLVEAVPA 317
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255540057|ref|XP_002511093.1| Magnesium-protoporphyrin O-methyltransferase, putative [Ricinus communis] gi|223550208|gb|EEF51695.1| Magnesium-protoporphyrin O-methyltransferase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 464 bits (1195), Expect = e-128, Method: Compositional matrix adjust.
Identities = 246/326 (75%), Positives = 276/326 (84%), Gaps = 15/326 (4%)
Query: 1 MAFTASLSSHIPFYNNSSTLSP--NRGKTSKTTPLLCKPVAAIPPLSTATTNSVP--DLS 56
MAF++S + F N+ SP + KTSKT V+AIPP +TA+ + D +
Sbjct: 1 MAFSSSFLTPTTFNTNNRRFSPFSPKIKTSKTVT-----VSAIPPFTTASAADLSSFDGT 55
Query: 57 TIAVISGGSIAALAAVLSLVDPERRRQLQAEEVGGGDKEVVREYFNNSGFQRWKKIYGET 116
+AVI GGS+AALAA LSL DPERRR++QAEEVGGGDKEVVREYFN++GFQRWKKIYGET
Sbjct: 56 ALAVIGGGSVAALAAALSLTDPERRRRMQAEEVGGGDKEVVREYFNSTGFQRWKKIYGET 115
Query: 117 DDVNRVQLDIRLGHSKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSAS 176
DDVN+VQ DIRLGHSKTVEN ++ML DEGSLKG+ VCDAGCGTGSL+IPLAK+GAIV AS
Sbjct: 116 DDVNKVQRDIRLGHSKTVENVLKMLKDEGSLKGVTVCDAGCGTGSLSIPLAKEGAIVLAS 175
Query: 177 DISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESLDGKYDTVVCLDVLIHYPQSK 236
DISAAMV+EA K A+E+L GE V+PKFEVKDLESLDGKYDTVVCLDVLIHYPQ+K
Sbjct: 176 DISAAMVSEAEKNAKEQL-----GEN-VLPKFEVKDLESLDGKYDTVVCLDVLIHYPQTK 229
Query: 237 ADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQK 296
ADGMIAHLA LAE RLILSFAPKTFYY+LLKRVGELFPGPSKATRAYLHAEADVERAL+K
Sbjct: 230 ADGMIAHLALLAENRLILSFAPKTFYYNLLKRVGELFPGPSKATRAYLHAEADVERALKK 289
Query: 297 VGWKIRKRGLITTQFYFARLVEAVPA 322
VGW+IR RGLITTQFYFARLVEAVPA
Sbjct: 290 VGWRIRNRGLITTQFYFARLVEAVPA 315
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357520605|ref|XP_003630591.1| Magnesium-protoporphyrin O-methyltransferase [Medicago truncatula] gi|355524613|gb|AET05067.1| Magnesium-protoporphyrin O-methyltransferase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 461 bits (1187), Expect = e-127, Method: Compositional matrix adjust.
Identities = 240/329 (72%), Positives = 272/329 (82%), Gaps = 14/329 (4%)
Query: 1 MAFTASLSS--HIPFYNNS---STLSPNRGKTSKTTPLLCKPVAAIPPLSTATTNSVP-- 53
MAF++S+ S +P N + +T SP+ TT AIPPLSTAT V
Sbjct: 1 MAFSSSMWSSLFVPNPNKTNRFATFSPSSHSKLLTTTF------AIPPLSTATAADVTGA 54
Query: 54 -DLSTIAVISGGSIAALAAVLSLVDPERRRQLQAEEVGGGDKEVVREYFNNSGFQRWKKI 112
D +T+AVISGG +A L A+LSL DPERRR+ QAEEVGG DKEVVREYFNN+GFQRWKKI
Sbjct: 55 IDGTTVAVISGGFVAGLTALLSLSDPERRRREQAEEVGGDDKEVVREYFNNNGFQRWKKI 114
Query: 113 YGETDDVNRVQLDIRLGHSKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAI 172
YG+TDDVNRVQ DIRLGHSKTVEN +QML DEGSL+G+ +CDAGCGTGSL+IPLAK+GAI
Sbjct: 115 YGDTDDVNRVQRDIRLGHSKTVENALQMLKDEGSLQGVTICDAGCGTGSLSIPLAKEGAI 174
Query: 173 VSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESLDGKYDTVVCLDVLIHY 232
V ASDISAAMVAEA K A+E+L++ G +P MPKF V DLESLDG YDTVVCLDV+IHY
Sbjct: 175 VCASDISAAMVAEAEKLAKEQLVSSENGVSPAMPKFVVSDLESLDGLYDTVVCLDVMIHY 234
Query: 233 PQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADVER 292
PQSKADGMIAHLASLAEKRLILSFAPKTFYYD LKRVGELFPGPSKATRAYLH+EADVER
Sbjct: 235 PQSKADGMIAHLASLAEKRLILSFAPKTFYYDALKRVGELFPGPSKATRAYLHSEADVER 294
Query: 293 ALQKVGWKIRKRGLITTQFYFARLVEAVP 321
AL+KVGW I+K+GLI TQFYFA+L+EAVP
Sbjct: 295 ALRKVGWTIKKKGLIATQFYFAKLIEAVP 323
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Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15234905|ref|NP_194238.1| magnesium-protoporphyrin IX methyltransferase [Arabidopsis thaliana] gi|30686748|ref|NP_849438.1| magnesium-protoporphyrin IX methyltransferase [Arabidopsis thaliana] gi|30686750|ref|NP_849439.1| magnesium-protoporphyrin IX methyltransferase [Arabidopsis thaliana] gi|334186906|ref|NP_001190832.1| magnesium-protoporphyrin IX methyltransferase [Arabidopsis thaliana] gi|4455251|emb|CAB36750.1| magnesium-protoporphyrin IX methyltransferase-like protein [Arabidopsis thaliana] gi|7269358|emb|CAB79417.1| magnesium-protoporphyrin IX methyltransferase-like protein [Arabidopsis thaliana] gi|14334514|gb|AAK59454.1| putative magnesium-protoporphyrin IX methyltransferase [Arabidopsis thaliana] gi|17104553|gb|AAL34165.1| putative magnesium-protoporphyrin IX methyltransferase [Arabidopsis thaliana] gi|222422821|dbj|BAH19398.1| AT4G25080 [Arabidopsis thaliana] gi|332659600|gb|AEE85000.1| magnesium-protoporphyrin IX methyltransferase [Arabidopsis thaliana] gi|332659601|gb|AEE85001.1| magnesium-protoporphyrin IX methyltransferase [Arabidopsis thaliana] gi|332659602|gb|AEE85002.1| magnesium-protoporphyrin IX methyltransferase [Arabidopsis thaliana] gi|332659604|gb|AEE85004.1| magnesium-protoporphyrin IX methyltransferase [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 451 bits (1160), Expect = e-124, Method: Compositional matrix adjust.
Identities = 218/282 (77%), Positives = 248/282 (87%), Gaps = 11/282 (3%)
Query: 45 STATTNSVPDL-----STIAVISGGSIAALAAVLSLVDPERRRQLQAEEVGGGDKEVVRE 99
+T SV DL +TIAV+ GGS+AALAA++SL DPERRR+LQAEEVGGGDKEVVRE
Sbjct: 36 ATVVAASVTDLAGVDSTTIAVLGGGSVAALAAMVSLTDPERRRKLQAEEVGGGDKEVVRE 95
Query: 100 YFNNSGFQRWKKIYGETDDVNRVQLDIRLGHSKTVENTMQMLNDEGSLKGIAVCDAGCGT 159
YFN++GF+RW+KIYGETD+VNRVQ DIRLGH+KTVENTM ML ++ SL G+ VCDAGCGT
Sbjct: 96 YFNSTGFERWRKIYGETDEVNRVQKDIRLGHAKTVENTMLMLTEDRSLAGVTVCDAGCGT 155
Query: 160 GSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESLDGK 219
G L+IPLAK+GAIVSASDISAAMVAEA KA+ +L ++N +PKFEV DLESL GK
Sbjct: 156 GLLSIPLAKEGAIVSASDISAAMVAEAEMKAKAQLPSEN------LPKFEVNDLESLTGK 209
Query: 220 YDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKA 279
YDTVVCLDVLIHYPQ+KADGMIAHLASLAEKR+ILSFAPKTFYYD+LKR+GELFPGPSKA
Sbjct: 210 YDTVVCLDVLIHYPQNKADGMIAHLASLAEKRVILSFAPKTFYYDILKRIGELFPGPSKA 269
Query: 280 TRAYLHAEADVERALQKVGWKIRKRGLITTQFYFARLVEAVP 321
TRAYLH+EADVERAL KVGWKI KRGL TTQFYF+RL+EAVP
Sbjct: 270 TRAYLHSEADVERALGKVGWKISKRGLTTTQFYFSRLIEAVP 311
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Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 322 | ||||||
| TAIR|locus:2117388 | 312 | CHLM "magnesium-protoporphyrin | 0.965 | 0.996 | 0.632 | 5e-99 | |
| TIGR_CMR|CBU_0350 | 234 | CBU_0350 "3-demethylubiquinone | 0.378 | 0.521 | 0.275 | 0.00096 |
| TAIR|locus:2117388 CHLM "magnesium-protoporphyrin IX methyltransferase" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 983 (351.1 bits), Expect = 5.0e-99, P = 5.0e-99
Identities = 203/321 (63%), Positives = 232/321 (72%)
Query: 1 MAFTASLSSHIPFYNNSSTLSPNRGKTSKTTPLLCKPVAAIPPLSTATTNSVPDLSTXXX 60
M F SL S + PN + + TP + AA ++ T + D +T
Sbjct: 1 MPFAPSLLSSSSSVSQFLPRFPNATRFN-VTP---RSRAATVVAASVTDLAGVDSTTIAV 56
Query: 61 XXXXXXXXXXXXXXXXDPERRRQLQAEEVGGGDKEVVREYFNNSGFQRWKKIYGETDDVN 120
DPERRR+LQAEEVGGGDKEVVREYFN++GF+RW+KIYGETD+VN
Sbjct: 57 LGGGSVAALAAMVSLTDPERRRKLQAEEVGGGDKEVVREYFNSTGFERWRKIYGETDEVN 116
Query: 121 RVQLDIRLGHSKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISX 180
RVQ DIRLGH+KTVENTM ML ++ SL G+ VCDAGCGTG L+IPLAK+GAIVSASDIS
Sbjct: 117 RVQKDIRLGHAKTVENTMLMLTEDRSLAGVTVCDAGCGTGLLSIPLAKEGAIVSASDISA 176
Query: 181 XXXXXXXXXXXXXXXXDNGGEAPVMPKFEVKDLESLDGKYDTVVCLDVLIHYPQSKADGM 240
+N +PKFEV DLESL GKYDTVVCLDVLIHYPQ+KADGM
Sbjct: 177 AMVAEAEMKAKAQLPSEN------LPKFEVNDLESLTGKYDTVVCLDVLIHYPQNKADGM 230
Query: 241 IAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQKVGWK 300
IAHLASLAEKR+ILSFAPKTFYYD+LKR+GELFPGPSKATRAYLH+EADVERAL KVGWK
Sbjct: 231 IAHLASLAEKRVILSFAPKTFYYDILKRIGELFPGPSKATRAYLHSEADVERALGKVGWK 290
Query: 301 IRKRGLITTQFYFARLVEAVP 321
I KRGL TTQFYF+RL+EAVP
Sbjct: 291 ISKRGLTTTQFYFSRLIEAVP 311
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| TIGR_CMR|CBU_0350 CBU_0350 "3-demethylubiquinone-9 3-methyltransferase" [Coxiella burnetii RSA 493 (taxid:227377)] | Back alignment and assigned GO terms |
|---|
Score = 108 (43.1 bits), Expect = 0.00096, P = 0.00096
Identities = 38/138 (27%), Positives = 66/138 (47%)
Query: 138 MQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISXXXXXXXXXXXXXXXXXD 197
++ + + +LKG V D GCG G L+ LAK GAIV+ D+S +
Sbjct: 41 LKYIEQQITLKGKHVLDVGCGGGLLSEALAKHGAIVTGVDMSESLIDVAK---------N 91
Query: 198 NGGEAPVMPKFEVKDLESL--DG-KYDTVVCLDVLIHYPQSKADGMIAHLASLAEK--RL 252
+ + + ++ +D+E L D ++D + C+++L H P + MI + A+L + +L
Sbjct: 92 HAEQQQLNINYQCQDIEILTKDAQRFDIITCMELLEHVPDPQR--MIKNCAALIKPGGKL 149
Query: 253 ILSFAPKTFYYDLLKRVG 270
S + F L VG
Sbjct: 150 FFSTINRNFKAYLYTIVG 167
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.316 0.133 0.386 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 322 286 0.00086 115 3 11 22 0.40 34
33 0.42 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 2
No. of states in DFA: 604 (64 KB)
Total size of DFA: 191 KB (2109 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 21.08u 0.28s 21.36t Elapsed: 00:00:01
Total cpu time: 21.08u 0.28s 21.36t Elapsed: 00:00:01
Start: Fri May 10 05:04:17 2013 End: Fri May 10 05:04:18 2013
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.1.1 | 0.766 |
| 4th Layer | 2.1.1.11 | 0.824 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | GSVIVG00018037001 | SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (328 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | CHLH | SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (1390 aa) | • | • | • | • | • | 0.998 | |||
 | GSVIVG00022232001 | SubName- Full=Chromosome chr6 scaffold_25, whole genome shotgun sequence; (747 aa) | • | • | • | • | • | 0.994 | |||
 | GSVIVG00002992001 | SubName- Full=Chromosome chr10 scaffold_138, whole genome shotgun sequence; (289 aa) | • | • | • | • | 0.994 | ||||
 | GSVIVG00023347001 | SubName- Full=Chromosome chr8 scaffold_29, whole genome shotgun sequence; (402 aa) | • | • | • | • | • | 0.992 | |||
 | GSVIVG00038863001 | SubName- Full=Chromosome chr8 scaffold_99, whole genome shotgun sequence; (370 aa) | • | • | • | • | 0.890 | ||||
 | GSVIVG00016328001 | SubName- Full=Chromosome chr17 scaffold_12, whole genome shotgun sequence; (467 aa) | • | • | • | 0.733 | |||||
 | GSVIVG00016085001 | SubName- Full=Chromosome chr17 scaffold_12, whole genome shotgun sequence; (471 aa) | • | • | 0.717 | ||||||
 | GSVIVG00017359001 | SubName- Full=Chromosome chr6 scaffold_15, whole genome shotgun sequence; (466 aa) | • | • | • | 0.652 | |||||
 | GSVIVG00035532001 | SubName- Full=Chromosome undetermined scaffold_79, whole genome shotgun sequence; (221 aa) | • | • | • | 0.602 | |||||
 | GSVIVG00036298001 | SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (566 aa) | • | 0.572 | |||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 322 | |||
| PLN02585 | 315 | PLN02585, PLN02585, magnesium protoporphyrin IX me | 1e-180 | |
| PRK07580 | 230 | PRK07580, PRK07580, Mg-protoporphyrin IX methyl tr | 1e-113 | |
| TIGR02021 | 219 | TIGR02021, BchM-ChlM, magnesium protoporphyrin O-m | 1e-107 | |
| pfam07109 | 97 | pfam07109, Mg-por_mtran_C, Magnesium-protoporphyri | 1e-49 | |
| COG2227 | 243 | COG2227, UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-m | 1e-37 | |
| pfam08242 | 98 | pfam08242, Methyltransf_12, Methyltransferase doma | 1e-11 | |
| pfam12847 | 104 | pfam12847, Methyltransf_18, Methyltransferase doma | 2e-11 | |
| TIGR01983 | 224 | TIGR01983, UbiG, ubiquinone biosynthesis O-methylt | 1e-10 | |
| pfam08241 | 92 | pfam08241, Methyltransf_11, Methyltransferase doma | 2e-08 | |
| pfam13847 | 151 | pfam13847, Methyltransf_31, Methyltransferase doma | 4e-08 | |
| PRK05134 | 233 | PRK05134, PRK05134, bifunctional 3-demethylubiquin | 6e-08 | |
| pfam13649 | 97 | pfam13649, Methyltransf_25, Methyltransferase doma | 7e-08 | |
| pfam13489 | 154 | pfam13489, Methyltransf_23, Methyltransferase doma | 8e-08 | |
| cd02440 | 107 | cd02440, AdoMet_MTases, S-adenosylmethionine-depen | 1e-07 | |
| COG2890 | 280 | COG2890, HemK, Methylase of polypeptide chain rele | 2e-07 | |
| COG2230 | 283 | COG2230, Cfa, Cyclopropane fatty acid synthase and | 2e-07 | |
| COG2263 | 198 | COG2263, COG2263, Predicted RNA methylase [Transla | 8e-07 | |
| COG2226 | 238 | COG2226, UbiE, Methylase involved in ubiquinone/me | 8e-07 | |
| TIGR03534 | 251 | TIGR03534, RF_mod_PrmC, protein-(glutamine-N5) met | 4e-06 | |
| TIGR00406 | 288 | TIGR00406, prmA, ribosomal protein L11 methyltrans | 4e-06 | |
| PRK08317 | 241 | PRK08317, PRK08317, hypothetical protein; Provisio | 4e-06 | |
| PRK11036 | 255 | PRK11036, PRK11036, putative S-adenosyl-L-methioni | 5e-06 | |
| PRK10258 | 251 | PRK10258, PRK10258, biotin biosynthesis protein Bi | 2e-05 | |
| PRK09328 | 275 | PRK09328, PRK09328, N5-glutamine S-adenosyl-L-meth | 4e-05 | |
| PRK00216 | 239 | PRK00216, ubiE, ubiquinone/menaquinone biosynthesi | 6e-05 | |
| TIGR01934 | 223 | TIGR01934, MenG_MenH_UbiE, ubiquinone/menaquinone | 8e-05 | |
| TIGR04290 | 226 | TIGR04290, meth_Rta_06860, methyltransferase, Rta_ | 9e-05 | |
| TIGR02072 | 240 | TIGR02072, BioC, biotin biosynthesis protein BioC | 1e-04 | |
| COG2264 | 300 | COG2264, PrmA, Ribosomal protein L11 methylase [Tr | 2e-04 | |
| PRK00517 | 250 | PRK00517, prmA, ribosomal protein L11 methyltransf | 2e-04 | |
| pfam01209 | 233 | pfam01209, Ubie_methyltran, ubiE/COQ5 methyltransf | 3e-04 | |
| COG4976 | 287 | COG4976, COG4976, Predicted methyltransferase (con | 3e-04 | |
| pfam05175 | 170 | pfam05175, MTS, Methyltransferase small domain | 3e-04 | |
| COG1352 | 268 | COG1352, CheR, Methylase of chemotaxis methyl-acce | 4e-04 | |
| PRK11207 | 197 | PRK11207, PRK11207, tellurite resistance protein T | 7e-04 | |
| COG2813 | 300 | COG2813, RsmC, 16S RNA G1207 methylase RsmC [Trans | 8e-04 | |
| COG0500 | 257 | COG0500, SmtA, SAM-dependent methyltransferases [S | 0.001 | |
| TIGR02752 | 231 | TIGR02752, MenG_heptapren, demethylmenaquinone met | 0.001 | |
| TIGR00537 | 179 | TIGR00537, hemK_rel_arch, HemK-related putative me | 0.001 | |
| pfam01170 | 172 | pfam01170, UPF0020, Putative RNA methylase family | 0.001 | |
| pfam06325 | 294 | pfam06325, PrmA, Ribosomal protein L11 methyltrans | 0.002 | |
| PRK14103 | 255 | PRK14103, PRK14103, trans-aconitate 2-methyltransf | 0.002 | |
| pfam01739 | 194 | pfam01739, CheR, CheR methyltransferase, SAM bindi | 0.002 | |
| COG1041 | 347 | COG1041, COG1041, Predicted DNA modification methy | 0.002 | |
| PRK14968 | 188 | PRK14968, PRK14968, putative methyltransferase; Pr | 0.003 |
| >gnl|CDD|215319 PLN02585, PLN02585, magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Score = 498 bits (1285), Expect = e-180
Identities = 207/317 (65%), Positives = 244/317 (76%), Gaps = 5/317 (1%)
Query: 8 SSHIPFYNNSSTLSPNRGKTSKTTPLLCKPVAAIPPLSTATTNSVPDLS--TIAVISGGS 65
+ SS+++ T P + ++ A+ + + T AV GG+
Sbjct: 2 PFAPSALSASSSVAQFLPPFPNATLFAVPPRSRAATVAAASVADLAGVDSTTFAVGGGGA 61
Query: 66 IAALAAVLSLVDPERRRQLQAEEVGGGDKEVVREYFNNSGFQRWKKIYGETDDVNRVQLD 125
+AALAA LSL DPERRRQLQAEEVGG DKEVVREYFN +GF+RW+KIYGETD+VN+VQLD
Sbjct: 62 VAALAAALSLTDPERRRQLQAEEVGGDDKEVVREYFNTTGFERWRKIYGETDEVNKVQLD 121
Query: 126 IRLGHSKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAE 185
IRLGH++TVE + L ++GSL G+ VCDAGCGTGSLAIPLA +GAIVSASDISAAMVAE
Sbjct: 122 IRLGHAQTVEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALEGAIVSASDISAAMVAE 181
Query: 186 ARKKAEEELLADNGGEAPVMPKFEVKDLESLDGKYDTVVCLDVLIHYPQSKADGMIAHLA 245
A ++A+E L A V+PKFE DLESL GKYDTV CLDVLIHYPQ KADGMIAHLA
Sbjct: 182 AERRAKEALAAL---PPEVLPKFEANDLESLSGKYDTVTCLDVLIHYPQDKADGMIAHLA 238
Query: 246 SLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQKVGWKIRKRG 305
SLAEKRLI+SFAPKT YYD+LKR+GELFPGPSKATRAYLHAEADVERAL+K GWK+ +R
Sbjct: 239 SLAEKRLIISFAPKTLYYDILKRIGELFPGPSKATRAYLHAEADVERALKKAGWKVARRE 298
Query: 306 LITTQFYFARLVEAVPA 322
+ TQFYF+RL+EAVP
Sbjct: 299 MTATQFYFSRLLEAVPV 315
|
Length = 315 |
| >gnl|CDD|236059 PRK07580, PRK07580, Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Score = 326 bits (838), Expect = e-113
Identities = 116/230 (50%), Positives = 148/230 (64%), Gaps = 8/230 (3%)
Query: 93 DKEVVREYFNNSGFQRWKKIYGETDDVNRVQLDIRLGHSKTVENTMQMLNDEGSLKGIAV 152
K VR YFN +GF RW +IY + V++V+ +R GH + + + L +G L G+ +
Sbjct: 9 HKSEVRTYFNRTGFDRWARIYSD-APVSKVRATVRAGHQRMRDTVLSWLPADGDLTGLRI 67
Query: 153 CDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKD 212
DAGCG GSL+IPLA++GA V ASDIS MV EAR++A E LA N FEV D
Sbjct: 68 LDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARERAPEAGLAGN-------ITFEVGD 120
Query: 213 LESLDGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGEL 272
LESL G++DTVVCLDVLIHYPQ A M+AHLASL LI +FAP T LL +G L
Sbjct: 121 LESLLGRFDTVVCLDVLIHYPQEDAARMLAHLASLTRGSLIFTFAPYTPLLALLHWIGGL 180
Query: 273 FPGPSKATRAYLHAEADVERALQKVGWKIRKRGLITTQFYFARLVEAVPA 322
FPGPS+ TR Y H E + RAL G+K+ + I++ FYF+RL+EAV
Sbjct: 181 FPGPSRTTRIYPHREKGIRRALAAAGFKVVRTERISSGFYFSRLLEAVRR 230
|
Length = 230 |
| >gnl|CDD|233687 TIGR02021, BchM-ChlM, magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Score = 310 bits (797), Expect = e-107
Identities = 114/227 (50%), Positives = 147/227 (64%), Gaps = 8/227 (3%)
Query: 93 DKEVVREYFNNSGFQRWKKIYGETDDVNRVQLDIRLGHSKTVENTMQMLNDEGSLKGIAV 152
KE VR YF+ + FQRW +IYG D V+RV+ +R G + + L LKG V
Sbjct: 1 QKEQVRHYFDGTAFQRWARIYGSGDPVSRVRQTVREGRAAMRRKLLDWLPK-DPLKGKRV 59
Query: 153 CDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKD 212
DAGCGTG L+I LAK+GAIV A DIS MV AR +A+ +A N +FEV D
Sbjct: 60 LDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRAQGRDVAGN-------VEFEVND 112
Query: 213 LESLDGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGEL 272
L SL G++D VVC+DVLIHYP S + HLASL ++R+I +FAPKT + LK +GEL
Sbjct: 113 LLSLCGEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTFAPKTAWLAFLKMIGEL 172
Query: 273 FPGPSKATRAYLHAEADVERALQKVGWKIRKRGLITTQFYFARLVEA 319
FPG S+AT AYLH D+ERAL ++GWKI + GL++T FY + L+E
Sbjct: 173 FPGSSRATSAYLHPMTDLERALGELGWKIVREGLVSTGFYNSMLLEI 219
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 219 |
| >gnl|CDD|115744 pfam07109, Mg-por_mtran_C, Magnesium-protoporphyrin IX methyltransferase C-terminus | Back alignment and domain information |
|---|
Score = 160 bits (406), Expect = 1e-49
Identities = 52/97 (53%), Positives = 74/97 (76%)
Query: 225 CLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYL 284
C+DVLIHYP A M++HLASL + R++ +FAPKT LKR+G+LFPG S++TRAY
Sbjct: 1 CMDVLIHYPAEDAAAMLSHLASLTKTRIVFTFAPKTPLLAALKRIGKLFPGSSRSTRAYP 60
Query: 285 HAEADVERALQKVGWKIRKRGLITTQFYFARLVEAVP 321
HAEAD++R L ++GW+I + G ++T FY ++L+EAV
Sbjct: 61 HAEADIQRILSELGWQIAREGRVSTGFYISQLLEAVR 97
|
This family represents the C-terminus (approximately 100 residues) of bacterial and eukaryotic Magnesium-protoporphyrin IX methyltransferase (EC:2.1.1.11). This converts magnesium-protoporphyrin IX to magnesium-protoporphyrin IX methylester using S-adenosyl-L-methionine as a cofactor. Length = 97 |
| >gnl|CDD|225137 COG2227, UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 133 bits (338), Expect = 1e-37
Identities = 46/221 (20%), Positives = 80/221 (36%), Gaps = 15/221 (6%)
Query: 93 DKEVVREYFNNSGFQRWKKIYGETDDVNRVQLDIRLGHSKTVENTMQMLNDEGSLKGIAV 152
D +Y F+ + + + L ++ L G+ V
Sbjct: 7 DDTQNVDYKELDKFEALASRWWDPE-GEFKPLHKINPLRLDY--IREVARLRFDLPGLRV 63
Query: 153 CDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKD 212
D GCG G L+ PLA+ GA V+ D S + A+ A E + + + V+D
Sbjct: 64 LDVGCGGGILSEPLARLGASVTGIDASEKPIEVAKLHALESGVNID------YRQATVED 117
Query: 213 LESLDGKYDTVVCLDVLIHYPQSKA-----DGMIAHLASLAEKRLILSFAPKTFYYDLLK 267
L S G++D V C++VL H P ++ ++ L + + +
Sbjct: 118 LASAGGQFDVVTCMEVLEHVPDPESFLRACAKLVKPGGILFLSTINRTLKAYLLAIIGAE 177
Query: 268 RVGELFPGPSKATRAYLHAEADVERALQKVGWKIRKRGLIT 308
V + P + R ++ + R L KI R +T
Sbjct: 178 YVLRIVPKGTHDYRKFIKPAELI-RWLLGANLKIIDRKGLT 217
|
Length = 243 |
| >gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 1e-11
Identities = 31/97 (31%), Positives = 44/97 (45%), Gaps = 10/97 (10%)
Query: 154 DAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVK 211
D GCGTG+L L + G + DIS A + A ++ LA G V + +V
Sbjct: 2 DIGCGTGTLLRALLEALPGLEYTGVDISPAALEAAAER-----LAALGLLDAVRVRLDVL 56
Query: 212 DLESLD-GKYDTVVCLDVLIH--YPQSKADGMIAHLA 245
D LD G +D VV +VL H P++ + L
Sbjct: 57 DAIDLDPGSFDVVVASNVLHHLADPRAVLRNLRRLLK 93
|
Members of this family are SAM dependent methyltransferases. Length = 98 |
| >gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 2e-11
Identities = 36/117 (30%), Positives = 49/117 (41%), Gaps = 24/117 (20%)
Query: 148 KGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVM 205
G V D GCGTGSLAI LA+ GA V+ D+S M+ AR+ A+ L
Sbjct: 1 PGARVLDIGCGTGSLAIELARLFPGARVTGVDLSPEMLELARENAKLALG---------- 50
Query: 206 PKFEV-----KDLESLDGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEK--RLILS 255
P+ D L +D V ++ LASL + RL+L+
Sbjct: 51 PRITFVQGDAPDALDLLEGFDAVFIGGGGGDLL-----ELLDALASLLKPGGRLVLN 102
|
Protein in this family function as methyltransferases. Length = 104 |
| >gnl|CDD|233668 TIGR01983, UbiG, ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 1e-10
Identities = 33/117 (28%), Positives = 52/117 (44%), Gaps = 18/117 (15%)
Query: 139 QMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADN 198
+ ++ L G+ V D GCG G L+ PLA+ GA V+ D S + A+ A+++ L
Sbjct: 36 TIRKNKKPLFGLRVLDVGCGGGLLSEPLARLGANVTGIDASEENIEVAKLHAKKDPLLK- 94
Query: 199 GGEAPVMPKFEVKDLESLD----GKYDTVVCLDVLIH--YPQSKADGMIAHLASLAE 249
++ +E L +D V C++VL H PQ I A L +
Sbjct: 95 -------IEYRCTSVEDLAEKGAKSFDVVTCMEVLEHVPDPQ----AFIRACAQLLK 140
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 224 |
| >gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 2e-08
Identities = 35/84 (41%), Positives = 41/84 (48%), Gaps = 18/84 (21%)
Query: 154 DAGCGTGSLAIPLAK-QGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKD 212
D GCGTG LA LA+ GA V+ D+S M+A ARK+A KF V D
Sbjct: 2 DVGCGTGLLAEALARRGGARVTGVDLSPEMLALARKRAP--------------RKFVVGD 47
Query: 213 LESL---DGKYDTVVCLDVLIHYP 233
E L D +D VV VL H P
Sbjct: 48 AEDLPFPDESFDVVVSSLVLHHLP 71
|
Members of this family are SAM dependent methyltransferases. Length = 92 |
| >gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 4e-08
Identities = 32/93 (34%), Positives = 46/93 (49%), Gaps = 17/93 (18%)
Query: 148 KGIAVCDAGCGTGSLAIPLAKQ---GAIVSASDISAAMVAEARKKAEEELLADNGGEAPV 204
GI V D GCGTG L LA++ GA V DIS + +A++ A ++L +N
Sbjct: 3 SGIKVLDLGCGTGYLTFILAEKLGPGAEVVGIDISEEAIEKAKENA-KKLGYEN------ 55
Query: 205 MPKFEVKDLESL------DGKYDTVVCLDVLIH 231
+F D+E L D +D V+ +VL H
Sbjct: 56 -VEFIQGDIEELPQLQLEDNSFDVVISNEVLNH 87
|
This family appears to be have methyltransferase activity. Length = 151 |
| >gnl|CDD|235350 PRK05134, PRK05134, bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Score = 52.5 bits (127), Expect = 6e-08
Identities = 33/109 (30%), Positives = 47/109 (43%), Gaps = 19/109 (17%)
Query: 145 GSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPV 204
G L G V D GCG G L+ +A+ GA V+ D S + AR A E +G +
Sbjct: 45 GGLFGKRVLDVGCGGGILSESMARLGADVTGIDASEENIEVARLHALE-----SG----L 95
Query: 205 MPKFEVKDLESL----DGKYDTVVCLDVLIH--YPQSKADGMIAHLASL 247
+ E L G++D V C+++L H P S + A L
Sbjct: 96 KIDYRQTTAEELAAEHPGQFDVVTCMEMLEHVPDPAS----FVRACAKL 140
|
Length = 233 |
| >gnl|CDD|222287 pfam13649, Methyltransf_25, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 7e-08
Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 13/85 (15%)
Query: 152 VCDAGCGTGSLAIPLAKQGAI-VSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEV 210
+ D GCGTG + LA+ G V+ DIS + A +E L D G + +F V
Sbjct: 1 ILDLGCGTGRVLRALARAGPSSVTGVDISKEALELA-----KERLRDKGPKV----RFVV 51
Query: 211 KDLESL---DGKYDTVVCLDVLIHY 232
D L +G +D V+C + + Y
Sbjct: 52 ADARDLPFEEGSFDLVICAGLSLDY 76
|
This family appears to be a methyltransferase domain. Length = 97 |
| >gnl|CDD|222171 pfam13489, Methyltransf_23, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 8e-08
Identities = 40/155 (25%), Positives = 62/155 (40%), Gaps = 24/155 (15%)
Query: 148 KGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPK 207
G V D GCGTG L L ++G V+ D S A V
Sbjct: 22 PGGRVLDIGCGTGILLRLLRERGFDVTGVDPSPAAVLIFS-------------------L 62
Query: 208 FEVKDLESLDGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLK 267
F+ D L GKYD + +VL H P A ++ L L + +L + T D
Sbjct: 63 FDAPDPAVLAGKYDLITAFEVLEHLPDPPA--LLQQLRELLKPGGVLLIS--TPLADDDA 118
Query: 268 RVGELFPGP-SKATRAYLHAEADVERALQKVGWKI 301
R+ + + T ++E ++R L+K G+++
Sbjct: 119 RLFANWHYLRPRNTHISFYSEESLKRLLEKAGFEL 153
|
This family appears to be a methyltransferase domain. Length = 154 |
| >gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 1e-07
Identities = 35/111 (31%), Positives = 47/111 (42%), Gaps = 14/111 (12%)
Query: 152 VCDAGCGTGSLAIPLAKQGAI-VSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEV 210
V D GCGTG+LA+ LA V+ DIS + ARK A LLADN +
Sbjct: 2 VLDLGCGTGALALALASGPGARVTGVDISPVALELARKAA-AALLADNV-------EVLK 53
Query: 211 KDLESL----DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEK-RLILSF 256
D E L D +D ++ L H + A + L L+L+
Sbjct: 54 GDAEELPPEADESFDVIISDPPLHHLVEDLARFLEEARRLLKPGGVLVLTL 104
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107 |
| >gnl|CDD|225443 COG2890, HemK, Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 2e-07
Identities = 31/96 (32%), Positives = 44/96 (45%), Gaps = 15/96 (15%)
Query: 135 ENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQG--AIVSASDISAAMVAEARKKAEE 192
E ++ + D G G+G++AI LAK+G A V A DIS +A AR+ AE
Sbjct: 97 ELLVEAALALLLQLDKRILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAE- 155
Query: 193 ELLADNGGEAPVMPKFEVKD---LESLDGKYDTVVC 225
NG + + V E L GK+D +V
Sbjct: 156 ----RNG-----LVRVLVVQSDLFEPLRGKFDLIVS 182
|
Length = 280 |
| >gnl|CDD|225139 COG2230, Cfa, Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 2e-07
Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 8/85 (9%)
Query: 148 KGIAVCDAGCGTGSLAIPLAK-QGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMP 206
G+ + D GCG G LAI A+ G V +S +A A K+ L DN
Sbjct: 72 PGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDN-------V 124
Query: 207 KFEVKDLESLDGKYDTVVCLDVLIH 231
+ ++D + +D +V + + H
Sbjct: 125 EVRLQDYRDFEEPFDRIVSVGMFEH 149
|
Length = 283 |
| >gnl|CDD|225172 COG2263, COG2263, Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 8e-07
Identities = 33/82 (40%), Positives = 40/82 (48%), Gaps = 10/82 (12%)
Query: 144 EGSLKGIAVCDAGCGTGSLAIPLAKQGA-IVSASDISAAMVAEARKKAEEELLADNGGEA 202
G L+G V D G GTG LAI A GA V A DI + AR AEE G+
Sbjct: 41 RGDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEE-----LLGDV 95
Query: 203 PVMPKFEVKDLESLDGKYDTVV 224
+F V D+ GK+DTV+
Sbjct: 96 ----EFVVADVSDFRGKFDTVI 113
|
Length = 198 |
| >gnl|CDD|225136 COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 8e-07
Identities = 28/102 (27%), Positives = 46/102 (45%), Gaps = 15/102 (14%)
Query: 93 DKEVVREYFNNSGFQRWKKIYGETDDVNRVQLDIRLGHSKTVENTMQMLNDEGSLKGIAV 152
+E V++ F+ K+ + D +N + + G + + L G G V
Sbjct: 9 KQEKVQKVFD--------KVAKKYDLMNDL---MSFGLHRLWRRALISL--LGIKPGDKV 55
Query: 153 CDAGCGTGSLAIPLAK--QGAIVSASDISAAMVAEARKKAEE 192
D CGTG +A+ LAK V DIS +M+ AR+K ++
Sbjct: 56 LDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKK 97
|
Length = 238 |
| >gnl|CDD|234248 TIGR03534, RF_mod_PrmC, protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Score = 47.1 bits (113), Expect = 4e-06
Identities = 39/125 (31%), Positives = 55/125 (44%), Gaps = 32/125 (25%)
Query: 152 VCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFE 209
V D G G+G++A+ LAK+ A V+A DIS +A ARK A L DN V +F
Sbjct: 91 VLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNA-ARLGLDN-----V--EFL 142
Query: 210 VKD-LESL-DGKYDTVVC--------------LDVLIHYPQ----SKADGM--IAHLASL 247
D E L GK+D +V +V H P+ DG+ + +
Sbjct: 143 QSDWFEPLPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQ 202
Query: 248 AEKRL 252
A + L
Sbjct: 203 APRLL 207
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3 [Protein fate, Protein modification and repair]. Length = 251 |
| >gnl|CDD|232960 TIGR00406, prmA, ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 4e-06
Identities = 39/125 (31%), Positives = 54/125 (43%), Gaps = 19/125 (15%)
Query: 109 WKKIYGETDDVNRVQLDIRL----GHSKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAI 164
W+ + + D + + LD L G T ++ L D LK V D GCG+G L+I
Sbjct: 118 WRDVPSDEDALI-IMLDPGLAFGTGTHPTTSLCLEWLEDL-DLKDKNVIDVGCGSGILSI 175
Query: 165 PLAKQGAI-VSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVK---DLESLDGKY 220
K GA V DI V ARK AE N V + +VK + ++GK
Sbjct: 176 AALKLGAAKVVGIDIDPLAVESARKNAEL-----NQ----VSDRLQVKLIYLEQPIEGKA 226
Query: 221 DTVVC 225
D +V
Sbjct: 227 DVIVA 231
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 288 |
| >gnl|CDD|181382 PRK08317, PRK08317, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 4e-06
Identities = 28/86 (32%), Positives = 38/86 (44%), Gaps = 15/86 (17%)
Query: 152 VCDAGCGTGSLAIPLAKQ---GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKF 208
V D GCG G+ A LA++ V D S AM+A A+++A V +F
Sbjct: 23 VLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGP-------NV--EF 73
Query: 209 EVKDLESL---DGKYDTVVCLDVLIH 231
D + L DG +D V VL H
Sbjct: 74 VRGDADGLPFPDGSFDAVRSDRVLQH 99
|
Length = 241 |
| >gnl|CDD|182918 PRK11036, PRK11036, putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 5e-06
Identities = 21/47 (44%), Positives = 29/47 (61%)
Query: 152 VCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADN 198
V DAG G G AI LA+ G V D+SA M+ A++ AE + ++DN
Sbjct: 48 VLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAKQAAEAKGVSDN 94
|
Length = 255 |
| >gnl|CDD|182340 PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 2e-05
Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
Query: 151 AVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKK--AEEELLAD 197
V DAGCG G ++ ++G+ V+A D+S M+A+AR+K A+ L D
Sbjct: 45 HVLDAGCGPGWMSRYWRERGSQVTALDLSPPMLAQARQKDAADHYLAGD 93
|
Length = 251 |
| >gnl|CDD|236467 PRK09328, PRK09328, N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 44.0 bits (105), Expect = 4e-05
Identities = 40/143 (27%), Positives = 62/143 (43%), Gaps = 35/143 (24%)
Query: 134 VENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAE 191
VE ++ L + L+ V D G G+G++A+ LAK+ A V+A DIS +A AR+ A+
Sbjct: 97 VEWALEALLLKEPLR---VLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK 153
Query: 192 EELLADNGGEAPVMPKFEVKD-LESL-DGKYDTVVC--------------LDVLIHYPQS 235
+G A V +F D E L G++D +V +V H P
Sbjct: 154 ------HGLGARV--EFLQGDWFEPLPGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHL 205
Query: 236 ----KADGM--IAHLASLAEKRL 252
DG+ + A + L
Sbjct: 206 ALFGGEDGLDFYRRIIEQAPRYL 228
|
Length = 275 |
| >gnl|CDD|234689 PRK00216, ubiE, ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Score = 43.2 bits (103), Expect = 6e-05
Identities = 24/65 (36%), Positives = 30/65 (46%), Gaps = 6/65 (9%)
Query: 137 TMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQG---AIVSASDISAAMVAEARKKAEEE 193
T++ L G V D CGTG LAI LAK V D S M+A R+K +
Sbjct: 43 TIKWLG---VRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDL 99
Query: 194 LLADN 198
L+ N
Sbjct: 100 GLSGN 104
|
Length = 239 |
| >gnl|CDD|233645 TIGR01934, MenG_MenH_UbiE, ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 8e-05
Identities = 31/87 (35%), Positives = 39/87 (44%), Gaps = 16/87 (18%)
Query: 145 GSLKGIAVCDAGCGTGSLAIPLAKQGAI---VSASDISAAMVAEARKKAEEELLADNGGE 201
G KG V D CGTG LAI LAK V+ D S+ M+ A+KK+E L
Sbjct: 36 GVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNI----- 90
Query: 202 APVMPKFEVKDLESL---DGKYDTVVC 225
+F D E+L D +D V
Sbjct: 91 -----EFIQADAEALPFEDNSFDAVTI 112
|
This model represents a family of methyltransferases involved in the biosynthesis of menaquinone and ubiqinone. Some members such as the UbiE enzyme from E. coli are believed to act in both pathways, while others may act in only the menaquinone pathway. These methyltransferases are members of the UbiE/CoQ family of methyltransferases (pfam01209) which also contains ubiquinone methyltransferases and other methyltransferases. Members of this clade include a wide distribution of bacteria and eukaryotes, but no archaea. An outgroup for this clade is provided by the phosphatidylethanolamine methyltransferase (EC 2.1.1.17) from Rhodobacter sphaeroides. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 223 |
| >gnl|CDD|213903 TIGR04290, meth_Rta_06860, methyltransferase, Rta_06860 family | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 9e-05
Identities = 31/102 (30%), Positives = 46/102 (45%), Gaps = 9/102 (8%)
Query: 147 LKGIAVCDAGCGTGSLAIPLAKQGAI-VSASDISAAMVAEARKKAEEELLADNGGEAPVM 205
L G +V D GC G +I + ++GA V D +A+AR AE G
Sbjct: 48 LSGWSVLDIGCNAGFYSIEMKRRGAGRVLGIDSDPRYLAQARFAAEVL------GADIEF 101
Query: 206 PKFEVKDLESLDGKYDTVVCLDVLIH--YPQSKADGMIAHLA 245
+ V DL L ++D V+ + VL H +P D + H+A
Sbjct: 102 RQMSVYDLGRLGERFDLVLFMGVLYHLRHPLLALDLLREHVA 143
|
Members of this family are methyltransferases that mark a widely distributed large conserved gene neighborhood of unknown function. It appears most common in soil and rhizosphere bacteria. Length = 226 |
| >gnl|CDD|233708 TIGR02072, BioC, biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 1e-04
Identities = 42/167 (25%), Positives = 67/167 (40%), Gaps = 36/167 (21%)
Query: 106 FQRWKKIYGETDDVNRVQLDIRLGHSKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIP 165
F + K Y D ++Q ++ + +L ++G +V D GCGTG L
Sbjct: 2 FNKAAKTY---DRHAKIQREMAK-------RLLALLKEKGIFIPASVLDIGCGTGYLTRA 51
Query: 166 LAKQGAIVS--ASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL---DGKY 220
L K+ A+DISA M+A+A+ K E + F D E L D +
Sbjct: 52 LLKRFPQAEFIANDISAGMLAQAKTKLSENVQ------------FICGDAEKLPLEDSSF 99
Query: 221 DTVVCLDVLIHYPQ--SKADGMIAHLASLAEKRLIL---SFAPKTFY 262
D +V L Q ++ LA + + +L +F P T +
Sbjct: 100 DLIVSNLAL----QWCDDLSQALSELARVLKPGGLLAFSTFGPGTLH 142
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin]. Length = 240 |
| >gnl|CDD|225173 COG2264, PrmA, Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 2e-04
Identities = 47/160 (29%), Positives = 65/160 (40%), Gaps = 31/160 (19%)
Query: 109 WKKIYGETDDVNRVQLDIRL--------GHSKTVENTMQMLNDEGSLKGIAVCDAGCGTG 160
W++ +D++N I L G T ++ L ++ KG V D GCG+G
Sbjct: 121 WREYPEPSDELN-----IELDPGLAFGTGTHPTTSLCLEAL-EKLLKKGKTVLDVGCGSG 174
Query: 161 SLAIPLAKQGAI-VSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESLDGK 219
LAI AK GA V DI V AR+ A NG E V K + +G
Sbjct: 175 ILAIAAAKLGAKKVVGVDIDPQAVEAARENAR-----LNGVELLVQAKGFLLLEVPENGP 229
Query: 220 YDTVVC---LDVLIH-YPQSKADGMIAHLASLAEKRLILS 255
+D +V +VL+ P + L RLILS
Sbjct: 230 FDVIVANILAEVLVELAPD-----IKRLLKP--GGRLILS 262
|
Length = 300 |
| >gnl|CDD|234786 PRK00517, prmA, ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Score = 41.7 bits (99), Expect = 2e-04
Identities = 43/124 (34%), Positives = 54/124 (43%), Gaps = 27/124 (21%)
Query: 138 MQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAI-VSASDISAAMVAEARKKAEEELLA 196
++ L ++ L G V D GCG+G LAI AK GA V A DI V AR+ AE
Sbjct: 110 LEAL-EKLVLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAEL---- 164
Query: 197 DNGGEAPVMPKFEVKDLESLDGKYDTVVC---LDVLIHYPQSKADGMIAHLASLAEK--R 251
NG E V L D K D +V + L+ + LA L + R
Sbjct: 165 -NGVELNV-------YLPQGDLKADVIVANILANPLLE--------LAPDLARLLKPGGR 208
Query: 252 LILS 255
LILS
Sbjct: 209 LILS 212
|
Length = 250 |
| >gnl|CDD|110227 pfam01209, Ubie_methyltran, ubiE/COQ5 methyltransferase family | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 3e-04
Identities = 29/104 (27%), Positives = 41/104 (39%), Gaps = 18/104 (17%)
Query: 111 KIYGETDDVNRVQLDIRLG-HSKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAK- 168
+ + D +N V I G H + TM+ + +G D GTG L+
Sbjct: 15 SVASKYDLMNDV---ISFGIHRLWKDFTMKCMGV---KRGNKFLDVAGGTGDWTFGLSDS 68
Query: 169 ---QGAIVSASDISAAMVAEARKKAEE------ELLADNGGEAP 203
G +V DI+ M+ E KKA+E E L N E P
Sbjct: 69 AGSSGKVVGL-DINENMLKEGEKKAKEEGKYNIEFLQGNAEELP 111
|
Length = 233 |
| >gnl|CDD|227310 COG4976, COG4976, Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 3e-04
Identities = 43/151 (28%), Positives = 65/151 (43%), Gaps = 20/151 (13%)
Query: 152 VCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVK 211
+ D GCGTG L ++ DIS M+A+A +K + L EA V
Sbjct: 129 MLDLGCGTGLTGEALRDMADRLTGVDISENMLAKAHEKGLYDTLYV--AEA-------VL 179
Query: 212 DLESLDG-KYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVG 270
LE L ++D +V DVL + +G+ A A L + +F+ +T L G
Sbjct: 180 FLEDLTQERFDLIVAADVLPYL--GALEGLFAGAAGLLAPGGLFAFSVET-----LPDDG 232
Query: 271 ELFPGPSKATRAYLHAEADVERALQKVGWKI 301
GPS + Y H+E+ V L G ++
Sbjct: 233 GFVLGPS---QRYAHSESYVRALLAASGLEV 260
|
Length = 287 |
| >gnl|CDD|203189 pfam05175, MTS, Methyltransferase small domain | Back alignment and domain information |
|---|
Score = 40.2 bits (95), Expect = 3e-04
Identities = 27/78 (34%), Positives = 35/78 (44%), Gaps = 12/78 (15%)
Query: 152 VCDAGCGTGSLAIPLAKQG--AIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFE 209
V D GCG G L LAK+ V+ DI+A + AR LA NG E +
Sbjct: 35 VLDLGCGYGVLGAALAKRSPDLEVTMVDINARALESARAN-----LAANGLEN---GEVF 86
Query: 210 VKDLES--LDGKYDTVVC 225
DL S GK+D ++
Sbjct: 87 WSDLYSAVEPGKFDLIIS 104
|
This domain is found in ribosomal RNA small subunit methyltransferase C as well as other methyltransferases . Length = 170 |
| >gnl|CDD|224271 COG1352, CheR, Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 4e-04
Identities = 41/193 (21%), Positives = 71/193 (36%), Gaps = 53/193 (27%)
Query: 140 MLNDEGSLKGIAVCDAGCGTG----SLAIPLAKQGAIVS-------ASDISAAMVAEAR- 187
L + I + A C TG SLA+ L + ++ A+DI +++ +AR
Sbjct: 88 ELVKRKKGRPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARA 147
Query: 188 ---------KKAEEELLA---DNGGEAPVMPKFEVKDL-----------ESLDGKYDTVV 224
+ ELL + GG+ K E++ + GK+D +
Sbjct: 148 GIYPSRELLRGLPPELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSPFLGKFDLIF 207
Query: 225 CLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYL 284
C +VLI++ + ++R++ F D LK G LF G S+
Sbjct: 208 CRNVLIYFDEE------------TQERILRRF------ADSLKPGGLLFLGHSETIPGTS 249
Query: 285 HAEADVERALQKV 297
++E V
Sbjct: 250 TEFFELETPGATV 262
|
Length = 268 |
| >gnl|CDD|183040 PRK11207, PRK11207, tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 7e-04
Identities = 32/94 (34%), Positives = 46/94 (48%), Gaps = 12/94 (12%)
Query: 154 DAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARK-KAEEELLADNGGEAPVMPKFEVKD 212
D GCG G ++ LA G V+A D + +A + KA E L DN A V D
Sbjct: 36 DLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLERIKAAENL--DNLHTA-------VVD 86
Query: 213 LESL--DGKYDTVVCLDVLIHYPQSKADGMIAHL 244
L +L DG+YD ++ VL+ G+IA++
Sbjct: 87 LNNLTFDGEYDFILSTVVLMFLEAKTIPGLIANM 120
|
Length = 197 |
| >gnl|CDD|225370 COG2813, RsmC, 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 8e-04
Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 9/76 (11%)
Query: 152 VCDAGCGTGSLAIPLAKQG--AIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFE 209
V D GCG G L + LAK+ A ++ D++A V ARK LA NG E + +
Sbjct: 162 VLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKN-----LAANGVENTEV--WA 214
Query: 210 VKDLESLDGKYDTVVC 225
E ++GK+D ++
Sbjct: 215 SNLYEPVEGKFDLIIS 230
|
Length = 300 |
| >gnl|CDD|223574 COG0500, SmtA, SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Score = 39.5 bits (89), Expect = 0.001
Identities = 44/183 (24%), Positives = 60/183 (32%), Gaps = 17/183 (9%)
Query: 148 KGIAVCDAGCGTG--SLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVM 205
G+ V D GCGTG +L L +GA V D+S M+A AR +AE L
Sbjct: 48 GGLGVLDIGCGTGRLALLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLV------- 100
Query: 206 PKFEVKDLESL------DGKYDTVVCLDVLIHYPQSKA-DGMIAHLASLAEKRLILSFAP 258
F V D +D V+ L VL P +KA ++ L L
Sbjct: 101 -DFVVADALGGVLPFEDSASFDLVISLLVLHLLPPAKALRELLRVLKPGGRLVLSDLLRD 159
Query: 259 KTFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQKVGWKIRKRGLITTQFYFARLVE 318
L +G P + L L + ARL+E
Sbjct: 160 GLLEGRLAALLGFGDPVLERGDILLELEALLRLELLDLEELLGLLGELELERGGLARLLE 219
Query: 319 AVP 321
+
Sbjct: 220 ELR 222
|
Length = 257 |
| >gnl|CDD|131799 TIGR02752, MenG_heptapren, demethylmenaquinone methyltransferase | Back alignment and domain information |
|---|
Score = 39.4 bits (92), Expect = 0.001
Identities = 30/104 (28%), Positives = 50/104 (48%), Gaps = 14/104 (13%)
Query: 109 WKKIYGETDDVNRVQLDIRLGHSKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAK 168
++KIY + D +N V + + H K ++TM+ +N + + VC CGT +I LA+
Sbjct: 11 FEKIYKKYDRMNSV-ISFQR-HKKWRKDTMKRMNVQAGTSALDVC---CGTADWSIALAE 65
Query: 169 ---QGAIVSASDISAAMVAEARKKAEE------ELLADNGGEAP 203
V D S M++ R+K ++ EL+ N E P
Sbjct: 66 AVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELP 109
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 231 |
| >gnl|CDD|129628 TIGR00537, hemK_rel_arch, HemK-related putative methylase | Back alignment and domain information |
|---|
Score = 38.7 bits (90), Expect = 0.001
Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 8/90 (8%)
Query: 135 ENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEEL 194
E+++ + + LK V + G GTG +AI L +G + +DI+ V E R+ A+
Sbjct: 6 EDSLLLEANLRELKPDDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENAKL-- 63
Query: 195 LADNGGEAPVMPKFEVKDLESLDGKYDTVV 224
N V + + GK+D ++
Sbjct: 64 ---NNVGLDV---VMTDLFKGVRGKFDVIL 87
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes [Unknown function, Enzymes of unknown specificity]. Length = 179 |
| >gnl|CDD|216342 pfam01170, UPF0020, Putative RNA methylase family UPF0020 | Back alignment and domain information |
|---|
Score = 38.4 bits (90), Expect = 0.001
Identities = 37/167 (22%), Positives = 57/167 (34%), Gaps = 29/167 (17%)
Query: 140 MLNDEGSLKGIAVCDAGCGTGSLAIPLAKQG---AIVSASDISAAMVAEARKKAEEELLA 196
M+N G G + D CG+G++ I A G A + SDI MV AR AE +
Sbjct: 20 MVNLAGWKPGDPLLDPMCGSGTILIEAALMGANIAPLYGSDIDWRMVQGARINAENAGVG 79
Query: 197 DNGGEAPVMPKFEVKDLESLDGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSF 256
D + + L L+G D +V + P + K +
Sbjct: 80 D----KIEFVQADAAKLPLLNGSVDAIVT-----NPPYGI---------RIGSKGALEKL 121
Query: 257 APKTFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQKVGWKIRK 303
P KRV + D E+A ++ G + +
Sbjct: 122 YPAFL--REAKRV------LRGRLVFATPEKKDFEKAAEERGLRKKH 160
|
This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains. Length = 172 |
| >gnl|CDD|218990 pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA) | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.002
Identities = 39/116 (33%), Positives = 47/116 (40%), Gaps = 24/116 (20%)
Query: 147 LKGIAVCDAGCGTGSLAIPLAKQGAI-VSASDISAAMVAEARKKAEEELLADNGGEAPVM 205
G V D GCG+G LAI K GA V DI V A++ AE NG V
Sbjct: 159 KPGETVLDVGCGSGILAIAALKLGAKKVVGVDIDPVAVRAAKENAEL-----NG----VE 209
Query: 206 PKFEVKDLESL-DGKYDTVVC---LDVLIHYPQSKADGMIAHLASL--AEKRLILS 255
+ EV L +GK D VV D LI + + +L LILS
Sbjct: 210 AQLEVYLPGDLPEGKADVVVANILADPLIE--------LAPDIYALVKPGGYLILS 257
|
This family consists of several Ribosomal protein L11 methyltransferase (EC:2.1.1.-) sequences. Length = 294 |
| >gnl|CDD|184509 PRK14103, PRK14103, trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 38.9 bits (91), Expect = 0.002
Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 152 VCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLAD 197
V D GCG G+L LA++ GA++ A D S MVA AR++ + D
Sbjct: 33 VVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARERGVDARTGD 80
|
Length = 255 |
| >gnl|CDD|216673 pfam01739, CheR, CheR methyltransferase, SAM binding domain | Back alignment and domain information |
|---|
Score = 38.4 bits (90), Expect = 0.002
Identities = 31/114 (27%), Positives = 46/114 (40%), Gaps = 33/114 (28%)
Query: 150 IAVCDAGCGTG----SLAIPLAKQ--GAIVS-----ASDISAAMVAEAR---------KK 189
+ + AGC +G SLA+ LA+ A+ A+DI + + +AR +
Sbjct: 32 VRIWSAGCSSGEEPYSLAMLLAETLPNALPWDFKILATDIDLSALEKARAGVYPERELEG 91
Query: 190 AEEELLA------DNGG-----EAPVMPKFEVKDL--ESLDGKYDTVVCLDVLI 230
ELL GG E M FE +L G +D + C +VLI
Sbjct: 92 LPPELLRRYFTKGAGGGYRVKPEIKEMVLFEYHNLLDYPPLGDFDVIFCRNVLI 145
|
CheR proteins are part of the chemotaxis signaling mechanism in bacteria. CheR methylates the chemotaxis receptor at specific glutamate residues. CheR is an S-adenosylmethionine- dependent methyltransferase - the C-terminal domain (this one) binds SAM. Length = 194 |
| >gnl|CDD|223971 COG1041, COG1041, Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 38.9 bits (91), Expect = 0.002
Identities = 25/86 (29%), Positives = 34/86 (39%), Gaps = 4/86 (4%)
Query: 140 MLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNG 199
M+N +G V D CGTG + I GA V SDI MV A+ E
Sbjct: 189 MVNLARVKRGELVLDPFCGTGGILIEAGLMGARVIGSDIDERMVRGAKINLEY----YGI 244
Query: 200 GEAPVMPKFEVKDLESLDGKYDTVVC 225
+ PV+ + +L D D +
Sbjct: 245 EDYPVLKVLDATNLPLRDNSVDAIAT 270
|
Length = 347 |
| >gnl|CDD|237872 PRK14968, PRK14968, putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 37.6 bits (88), Expect = 0.003
Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 8/79 (10%)
Query: 148 KGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPK 207
KG V + G G+G +AI AK G V DI+ V A+ A+ + +NG E
Sbjct: 23 KGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAKLNNIRNNGVE------ 76
Query: 208 FEVKDL-ESLDG-KYDTVV 224
DL E G K+D ++
Sbjct: 77 VIRSDLFEPFRGDKFDVIL 95
|
Length = 188 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 322 | |||
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 100.0 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 99.95 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.95 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.9 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.89 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.88 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.88 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.85 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.85 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 99.84 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.84 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.81 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.8 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.8 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.8 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.8 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.79 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.79 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.78 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.77 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.77 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.76 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.75 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.74 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 99.74 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.74 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.74 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.73 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.73 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.72 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.72 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.72 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.71 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.71 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.71 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 99.7 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.69 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 99.69 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 99.69 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 99.68 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.67 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.67 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 99.67 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.67 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 99.66 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.66 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.66 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.64 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.64 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.64 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 99.63 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 99.62 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 99.61 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.61 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 99.61 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 99.61 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 99.59 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.57 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.57 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 99.57 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.56 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.55 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 99.54 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 99.53 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.52 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 99.52 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.51 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.5 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.49 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 99.46 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.46 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 99.45 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 99.45 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 99.44 | |
| PF07109 | 97 | Mg-por_mtran_C: Magnesium-protoporphyrin IX methyl | 99.44 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.44 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 99.43 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 99.42 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.42 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.41 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 99.41 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 99.41 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.4 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.39 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.39 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 99.39 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 99.39 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.38 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 99.37 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 99.37 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.37 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 99.37 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.36 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.36 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 99.36 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 99.35 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.35 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 99.35 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.34 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 99.34 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 99.33 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 99.33 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.31 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 99.31 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 99.3 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 99.3 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 99.29 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 99.26 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 99.26 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 99.25 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 99.24 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 99.23 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 99.22 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 99.22 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 99.21 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 99.2 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 99.18 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 99.16 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 99.15 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 99.14 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 99.14 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.13 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 99.13 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 99.13 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 99.12 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 99.12 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 99.11 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 99.1 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 99.1 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 99.1 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 99.08 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 99.07 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 99.06 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 99.06 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 99.06 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 99.06 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 99.04 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 99.03 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 99.02 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 99.01 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 99.0 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 98.99 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 98.99 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 98.98 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 98.97 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 98.97 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 98.96 | |
| PLN02476 | 278 | O-methyltransferase | 98.95 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 98.95 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 98.94 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 98.94 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 98.94 | |
| PLN02366 | 308 | spermidine synthase | 98.93 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 98.92 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 98.92 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 98.92 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 98.91 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 98.9 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 98.9 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 98.89 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 98.88 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 98.88 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.88 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 98.87 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 98.87 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 98.85 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.83 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 98.82 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 98.81 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 98.78 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 98.77 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 98.77 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 98.76 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 98.75 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 98.75 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 98.74 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 98.74 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 98.73 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 98.71 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 98.7 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 98.69 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 98.69 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 98.67 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 98.65 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 98.65 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 98.65 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 98.62 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 98.62 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 98.61 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 98.6 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 98.59 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 98.59 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 98.59 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 98.58 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 98.55 | |
| KOG2730 | 263 | consensus Methylase [General function prediction o | 98.55 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 98.53 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 98.51 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 98.5 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 98.49 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 98.47 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 98.44 | |
| PLN02823 | 336 | spermine synthase | 98.43 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 98.4 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 98.37 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 98.33 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 98.29 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 98.29 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 98.28 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 98.27 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 98.27 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 98.26 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 98.25 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 98.25 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 98.19 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 98.19 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 98.18 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 98.16 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 98.16 | |
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 98.16 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 98.12 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 98.11 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 98.08 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 98.08 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 98.05 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 98.04 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 98.04 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 98.03 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 98.03 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 98.0 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 97.98 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 97.98 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 97.9 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 97.78 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 97.75 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 97.74 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 97.66 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 97.62 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 97.55 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 97.54 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 97.54 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 97.52 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 97.51 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 97.48 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 97.47 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 97.46 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 97.45 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 97.44 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 97.43 | |
| TIGR00027 | 260 | mthyl_TIGR00027 methyltransferase, putative, TIGR0 | 97.41 | |
| PHA01634 | 156 | hypothetical protein | 97.3 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 97.24 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 97.21 | |
| KOG4058 | 199 | consensus Uncharacterized conserved protein [Funct | 97.08 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 97.04 | |
| cd00315 | 275 | Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth | 97.04 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 97.04 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 97.02 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 97.01 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 96.92 | |
| COG3129 | 292 | Predicted SAM-dependent methyltransferase [General | 96.58 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 96.44 | |
| PF04445 | 234 | SAM_MT: Putative SAM-dependent methyltransferase; | 96.43 | |
| PF01795 | 310 | Methyltransf_5: MraW methylase family; InterPro: I | 96.41 | |
| COG4627 | 185 | Uncharacterized protein conserved in bacteria [Fun | 96.34 | |
| COG0275 | 314 | Predicted S-adenosylmethionine-dependent methyltra | 96.33 | |
| PF00145 | 335 | DNA_methylase: C-5 cytosine-specific DNA methylase | 96.3 | |
| PF01555 | 231 | N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th | 96.3 | |
| PRK13699 | 227 | putative methylase; Provisional | 96.2 | |
| TIGR00675 | 315 | dcm DNA-methyltransferase (dcm). All proteins in t | 96.17 | |
| COG4301 | 321 | Uncharacterized conserved protein [Function unknow | 95.88 | |
| PF07757 | 112 | AdoMet_MTase: Predicted AdoMet-dependent methyltra | 95.73 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 95.73 | |
| PF03514 | 374 | GRAS: GRAS domain family; InterPro: IPR005202 Sequ | 95.72 | |
| COG3315 | 297 | O-Methyltransferase involved in polyketide biosynt | 95.68 | |
| PRK07066 | 321 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 95.67 | |
| PRK08293 | 287 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 95.66 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 95.6 | |
| KOG2793 | 248 | consensus Putative N2,N2-dimethylguanosine tRNA me | 95.57 | |
| PF02636 | 252 | Methyltransf_28: Putative S-adenosyl-L-methionine- | 95.46 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 95.46 | |
| COG1255 | 129 | Uncharacterized protein conserved in archaea [Func | 95.44 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 95.44 | |
| COG1565 | 370 | Uncharacterized conserved protein [Function unknow | 95.4 | |
| KOG2920 | 282 | consensus Predicted methyltransferase [General fun | 95.31 | |
| COG0270 | 328 | Dcm Site-specific DNA methylase [DNA replication, | 95.3 | |
| PF04072 | 183 | LCM: Leucine carboxyl methyltransferase; InterPro: | 95.18 | |
| KOG2671 | 421 | consensus Putative RNA methylase [Replication, rec | 95.16 | |
| KOG1501 | 636 | consensus Arginine N-methyltransferase [General fu | 95.08 | |
| PF11599 | 246 | AviRa: RRNA methyltransferase AviRa; InterPro: IPR | 95.03 | |
| PF03686 | 127 | UPF0146: Uncharacterised protein family (UPF0146); | 95.01 | |
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 94.92 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 94.88 | |
| PF06859 | 110 | Bin3: Bicoid-interacting protein 3 (Bin3); InterPr | 94.85 | |
| PF02737 | 180 | 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind | 94.84 | |
| KOG1122 | 460 | consensus tRNA and rRNA cytosine-C5-methylase (nuc | 94.67 | |
| KOG1227 | 351 | consensus Putative methyltransferase [General func | 94.64 | |
| PRK05808 | 282 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 94.12 | |
| COG3510 | 237 | CmcI Cephalosporin hydroxylase [Defense mechanisms | 94.05 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 94.03 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 94.02 | |
| PRK10458 | 467 | DNA cytosine methylase; Provisional | 93.82 | |
| PRK06035 | 291 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 93.79 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 93.77 | |
| KOG2078 | 495 | consensus tRNA modification enzyme [RNA processing | 93.69 | |
| KOG2651 | 476 | consensus rRNA adenine N-6-methyltransferase [RNA | 93.42 | |
| PRK06130 | 311 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 93.27 | |
| PRK09260 | 288 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 93.24 | |
| PRK11730 | 715 | fadB multifunctional fatty acid oxidation complex | 93.2 | |
| KOG1562 | 337 | consensus Spermidine synthase [Amino acid transpor | 93.13 | |
| PF02005 | 377 | TRM: N2,N2-dimethylguanosine tRNA methyltransferas | 93.13 | |
| KOG2539 | 491 | consensus Mitochondrial/chloroplast ribosome small | 92.61 | |
| KOG2918 | 335 | consensus Carboxymethyl transferase [Posttranslati | 92.49 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 91.78 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 91.59 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 91.39 | |
| COG1867 | 380 | TRM1 N2,N2-dimethylguanosine tRNA methyltransferas | 91.25 | |
| KOG0822 | 649 | consensus Protein kinase inhibitor [Cell cycle con | 91.16 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 91.11 | |
| TIGR02437 | 714 | FadB fatty oxidation complex, alpha subunit FadB. | 90.62 | |
| PRK11154 | 708 | fadJ multifunctional fatty acid oxidation complex | 90.58 | |
| PRK06129 | 308 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 90.56 | |
| COG0286 | 489 | HsdM Type I restriction-modification system methyl | 90.27 | |
| PF07279 | 218 | DUF1442: Protein of unknown function (DUF1442); In | 90.17 | |
| PLN02545 | 295 | 3-hydroxybutyryl-CoA dehydrogenase | 90.06 | |
| TIGR02441 | 737 | fa_ox_alpha_mit fatty acid oxidation complex, alph | 89.94 | |
| PRK07819 | 286 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 89.7 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 89.28 | |
| PRK06139 | 330 | short chain dehydrogenase; Provisional | 88.58 | |
| PF03492 | 334 | Methyltransf_7: SAM dependent carboxyl methyltrans | 88.35 | |
| PRK06124 | 256 | gluconate 5-dehydrogenase; Provisional | 88.3 | |
| PF05430 | 124 | Methyltransf_30: S-adenosyl-L-methionine-dependent | 88.25 | |
| KOG0024 | 354 | consensus Sorbitol dehydrogenase [Secondary metabo | 88.05 | |
| PRK05867 | 253 | short chain dehydrogenase; Provisional | 88.04 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 87.96 | |
| PRK06172 | 253 | short chain dehydrogenase; Provisional | 87.75 | |
| PRK03659 | 601 | glutathione-regulated potassium-efflux system prot | 87.71 | |
| KOG1201 | 300 | consensus Hydroxysteroid 17-beta dehydrogenase 11 | 87.61 | |
| KOG3924 | 419 | consensus Putative protein methyltransferase invol | 87.34 | |
| PRK07035 | 252 | short chain dehydrogenase; Provisional | 87.09 | |
| PRK08339 | 263 | short chain dehydrogenase; Provisional | 87.08 | |
| PRK06197 | 306 | short chain dehydrogenase; Provisional | 86.74 | |
| PRK07890 | 258 | short chain dehydrogenase; Provisional | 86.57 | |
| PRK07097 | 265 | gluconate 5-dehydrogenase; Provisional | 86.41 | |
| PRK07417 | 279 | arogenate dehydrogenase; Reviewed | 86.39 | |
| KOG1253 | 525 | consensus tRNA methyltransferase [Translation, rib | 86.23 | |
| PRK05854 | 313 | short chain dehydrogenase; Provisional | 86.08 | |
| PRK05876 | 275 | short chain dehydrogenase; Provisional | 85.72 | |
| PRK07063 | 260 | short chain dehydrogenase; Provisional | 85.44 | |
| PRK07231 | 251 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 85.39 | |
| PRK07531 | 495 | bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe | 85.23 | |
| TIGR02440 | 699 | FadJ fatty oxidation complex, alpha subunit FadJ. | 84.96 | |
| PF03446 | 163 | NAD_binding_2: NAD binding domain of 6-phosphogluc | 84.78 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 84.75 | |
| PRK08085 | 254 | gluconate 5-dehydrogenase; Provisional | 84.57 | |
| PRK06194 | 287 | hypothetical protein; Provisional | 84.51 | |
| PRK12826 | 251 | 3-ketoacyl-(acyl-carrier-protein) reductase; Revie | 84.4 | |
| PRK08217 | 253 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 84.27 | |
| cd05188 | 271 | MDR Medium chain reductase/dehydrogenase (MDR)/zin | 84.18 | |
| PRK05866 | 293 | short chain dehydrogenase; Provisional | 84.15 | |
| PRK08862 | 227 | short chain dehydrogenase; Provisional | 84.05 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 83.97 | |
| PRK07062 | 265 | short chain dehydrogenase; Provisional | 83.95 | |
| PRK07814 | 263 | short chain dehydrogenase; Provisional | 83.84 | |
| PRK13394 | 262 | 3-hydroxybutyrate dehydrogenase; Provisional | 83.66 | |
| PRK07677 | 252 | short chain dehydrogenase; Provisional | 83.64 | |
| PRK07454 | 241 | short chain dehydrogenase; Provisional | 83.62 | |
| PRK07523 | 255 | gluconate 5-dehydrogenase; Provisional | 83.62 | |
| PRK07478 | 254 | short chain dehydrogenase; Provisional | 83.52 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 83.49 | |
| PRK06949 | 258 | short chain dehydrogenase; Provisional | 83.24 | |
| PRK07530 | 292 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 83.24 | |
| PRK08643 | 256 | acetoin reductase; Validated | 83.13 | |
| PRK08213 | 259 | gluconate 5-dehydrogenase; Provisional | 83.09 | |
| PRK07576 | 264 | short chain dehydrogenase; Provisional | 83.07 | |
| PRK06125 | 259 | short chain dehydrogenase; Provisional | 82.97 | |
| PRK12429 | 258 | 3-hydroxybutyrate dehydrogenase; Provisional | 82.82 | |
| PRK08340 | 259 | glucose-1-dehydrogenase; Provisional | 82.82 | |
| PRK06935 | 258 | 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | 82.63 | |
| PRK03562 | 621 | glutathione-regulated potassium-efflux system prot | 82.55 | |
| PRK10669 | 558 | putative cation:proton antiport protein; Provision | 82.31 | |
| PRK08589 | 272 | short chain dehydrogenase; Validated | 82.3 | |
| PRK09242 | 257 | tropinone reductase; Provisional | 82.29 | |
| PF02086 | 260 | MethyltransfD12: D12 class N6 adenine-specific DNA | 82.28 | |
| COG1568 | 354 | Predicted methyltransferases [General function pre | 82.26 | |
| PRK06196 | 315 | oxidoreductase; Provisional | 82.23 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 82.21 | |
| PRK09291 | 257 | short chain dehydrogenase; Provisional | 82.13 | |
| PF10354 | 166 | DUF2431: Domain of unknown function (DUF2431); Int | 81.91 | |
| PRK07109 | 334 | short chain dehydrogenase; Provisional | 81.68 | |
| PRK06720 | 169 | hypothetical protein; Provisional | 81.54 | |
| TIGR02279 | 503 | PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa | 81.53 | |
| PRK07024 | 257 | short chain dehydrogenase; Provisional | 81.47 | |
| TIGR01915 | 219 | npdG NADPH-dependent F420 reductase. This model re | 81.24 | |
| PRK06113 | 255 | 7-alpha-hydroxysteroid dehydrogenase; Validated | 81.21 | |
| PRK12823 | 260 | benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat | 81.05 | |
| COG0863 | 302 | DNA modification methylase [DNA replication, recom | 81.02 | |
| cd01065 | 155 | NAD_bind_Shikimate_DH NAD(P) binding domain of Shi | 81.01 | |
| PF10727 | 127 | Rossmann-like: Rossmann-like domain; InterPro: IPR | 80.96 | |
| PRK07791 | 286 | short chain dehydrogenase; Provisional | 80.92 | |
| TIGR03206 | 250 | benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr | 80.81 | |
| PRK12829 | 264 | short chain dehydrogenase; Provisional | 80.8 | |
| PF00107 | 130 | ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: | 80.74 | |
| PRK07666 | 239 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 80.73 | |
| PRK07326 | 237 | short chain dehydrogenase; Provisional | 80.65 | |
| PRK09072 | 263 | short chain dehydrogenase; Provisional | 80.49 | |
| PRK08277 | 278 | D-mannonate oxidoreductase; Provisional | 80.4 | |
| PRK07774 | 250 | short chain dehydrogenase; Provisional | 80.34 | |
| PRK08251 | 248 | short chain dehydrogenase; Provisional | 80.29 | |
| PRK05650 | 270 | short chain dehydrogenase; Provisional | 80.01 |
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-42 Score=310.15 Aligned_cols=267 Identities=76% Similarity=1.188 Sum_probs=235.7
Q ss_pred CCCceeeehhhhHHHHHHhhhhccChhHHhhhhhhhcCCCChHHHHHHhchhhHHHHHHHhcCCCcccchhhhhhcCchh
Q 020710 53 PDLSTIAVISGGSIAALAAVLSLVDPERRRQLQAEEVGGGDKEVVREYFNNSGFQRWKKIYGETDDVNRVQLDIRLGHSK 132 (322)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~rr~~~~~~~~~~~~~~v~~~f~~~~~~~w~~~y~~~~~~~~~~~~~~~~~~~ 132 (322)
.++++++++|+++++++++.++++||++||+.+.++....+++.|++|||+.+|++|..+|+.++.++..+.+.+|.+++
T Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~Fd~~a~~~w~~iy~~~d~v~~~~l~~~~~~~~ 128 (315)
T PLN02585 49 VDSTTFAVGGGGAVAALAAALSLTDPERRRQLQAEEVGGDDKEVVREYFNTTGFERWRKIYGETDEVNKVQLDIRLGHAQ 128 (315)
T ss_pred CCcceeeecchHHHHHHHHHHhccChHHHHhhhhhhhHHHHHHHHHHHhcccchhhHHHhcCCccccCceeeecccChHH
Confidence 34788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcc
Q 020710 133 TVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKD 212 (322)
Q Consensus 133 ~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d 212 (322)
.++.+++++...+..++.+|||||||+|.++..+++.|.+|+|+|+|+.|++.++++........ .....+.|.+.|
T Consensus 129 ~v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~~ml~~A~~~~~~~~~~~---~~~~~~~f~~~D 205 (315)
T PLN02585 129 TVEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALEGAIVSASDISAAMVAEAERRAKEALAAL---PPEVLPKFEAND 205 (315)
T ss_pred HHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhccccc---ccccceEEEEcc
Confidence 99999999876422357899999999999999999999999999999999999999987542110 001123889999
Q ss_pred cccCCCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCCCCCccccccCCHHHHHH
Q 020710 213 LESLDGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADVER 292 (322)
Q Consensus 213 ~~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (322)
+++++++||+|+|..+++|++++....+++.+.++.++++++.+.+.++.+.+++.+++.++++......|+++++++++
T Consensus 206 l~~l~~~fD~Vv~~~vL~H~p~~~~~~ll~~l~~l~~g~liIs~~p~~~~~~~l~~~g~~~~g~~~~~r~y~~s~eel~~ 285 (315)
T PLN02585 206 LESLSGKYDTVTCLDVLIHYPQDKADGMIAHLASLAEKRLIISFAPKTLYYDILKRIGELFPGPSKATRAYLHAEADVER 285 (315)
T ss_pred hhhcCCCcCEEEEcCEEEecCHHHHHHHHHHHHhhcCCEEEEEeCCcchHHHHHHHHHhhcCCCCcCceeeeCCHHHHHH
Confidence 98888999999999999999987777889999888888888899898888888888888888766666677889999999
Q ss_pred HHHHCCCEEEEEeeeecceehhhhhhhccC
Q 020710 293 ALQKVGWKIRKRGLITTQFYFARLVEAVPA 322 (322)
Q Consensus 293 ~l~~aGf~vv~~~~~~~~~~f~~~~~~~~~ 322 (322)
+++++||++++.+++...|||++++|++|+
T Consensus 286 lL~~AGf~v~~~~~~~~~~y~~~l~~~~~~ 315 (315)
T PLN02585 286 ALKKAGWKVARREMTATQFYFSRLLEAVPV 315 (315)
T ss_pred HHHHCCCEEEEEEEeecceeHHhhhhhccC
Confidence 999999999999999999999999999985
|
|
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.8e-27 Score=203.32 Aligned_cols=223 Identities=52% Similarity=0.861 Sum_probs=180.1
Q ss_pred CCChHHHHHHhchhhHHHHHHHhcCCCcccchhhhhhcCchhHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcC
Q 020710 91 GGDKEVVREYFNNSGFQRWKKIYGETDDVNRVQLDIRLGHSKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQG 170 (322)
Q Consensus 91 ~~~~~~v~~~f~~~~~~~w~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~ 170 (322)
...+..++.|||..+++.|...|+. ..+.......+..+....+.+++++...+..++.+|||||||+|.++..+++.+
T Consensus 7 ~~~~~~v~~~~~~~~~~~w~~~y~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vLDvGcG~G~~~~~l~~~~ 85 (230)
T PRK07580 7 LEHKSEVRTYFNRTGFDRWARIYSD-APVSKVRATVRAGHQRMRDTVLSWLPADGDLTGLRILDAGCGVGSLSIPLARRG 85 (230)
T ss_pred hhchhhhhHHHhhhccchHHHhhCc-CchhHHHHHhcchHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHcC
Confidence 3456788999999999999999986 444555445555556667778888876333467899999999999999999999
Q ss_pred CEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccCCCCccEEEEcccccccCcchHHHHHHHHHhccCC
Q 020710 171 AIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESLDGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEK 250 (322)
Q Consensus 171 ~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~ 250 (322)
.+|+|+|+|+.|++.|+++....+..+++ .|..+|+...+++||+|++..+++|++++....+++.+.+++++
T Consensus 86 ~~v~~~D~s~~~i~~a~~~~~~~~~~~~i-------~~~~~d~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~l~~~~~~ 158 (230)
T PRK07580 86 AKVVASDISPQMVEEARERAPEAGLAGNI-------TFEVGDLESLLGRFDTVVCLDVLIHYPQEDAARMLAHLASLTRG 158 (230)
T ss_pred CEEEEEECCHHHHHHHHHHHHhcCCccCc-------EEEEcCchhccCCcCEEEEcchhhcCCHHHHHHHHHHHHhhcCC
Confidence 89999999999999999998776553333 89999977668899999999999999988788999999998888
Q ss_pred eEEEEECCChhhHHHHHHhhccCCCCCCccccccCCHHHHHHHHHHCCCEEEEEeeeecceehhhhhhhcc
Q 020710 251 RLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQKVGWKIRKRGLITTQFYFARLVEAVP 321 (322)
Q Consensus 251 ~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~vv~~~~~~~~~~f~~~~~~~~ 321 (322)
++++.+.+..........+...++........++.+.+++.+++.++||++++.......+|++.+++.+|
T Consensus 159 ~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~~~~ 229 (230)
T PRK07580 159 SLIFTFAPYTPLLALLHWIGGLFPGPSRTTRIYPHREKGIRRALAAAGFKVVRTERISSGFYFSRLLEAVR 229 (230)
T ss_pred eEEEEECCccHHHHHHHHhccccCCccCCCCccccCHHHHHHHHHHCCCceEeeeeccchhHHHHHHHHhh
Confidence 88888877655455555566666544333444567899999999999999999999999999999999876
|
|
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.95 E-value=1e-26 Score=201.12 Aligned_cols=217 Identities=53% Similarity=0.867 Sum_probs=180.3
Q ss_pred hHHHHHHhchhhHHHHHHHhcCCCcccchhhhhhcCchhHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCCEE
Q 020710 94 KEVVREYFNNSGFQRWKKIYGETDDVNRVQLDIRLGHSKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIV 173 (322)
Q Consensus 94 ~~~v~~~f~~~~~~~w~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~v 173 (322)
++.++.+|+...+..|..+|+.++.++............+...+++++.. ...++.+|||+|||+|.++..+++.+.+|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~vLDiGcG~G~~~~~la~~~~~v 80 (219)
T TIGR02021 2 KEQVRHYFDGTAFQRWARIYGSGDPVSRVRQTVREGRAAMRRKLLDWLPK-DPLKGKRVLDAGCGTGLLSIELAKRGAIV 80 (219)
T ss_pred ccHHHHHhCchhHHHHHHhhCCchhhHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEeCCCCHHHHHHHHCCCEE
Confidence 36778899999999999999988888877666666677778888888874 12357899999999999999999998899
Q ss_pred EEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccCCCCccEEEEcccccccCcchHHHHHHHHHhccCCeEE
Q 020710 174 SASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESLDGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLI 253 (322)
Q Consensus 174 ~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~i 253 (322)
+|+|+|++|++.|+++....+...+ +.|.++|+.+++++||+|++..+++|++.+....+++++.++++++++
T Consensus 81 ~gvD~s~~~i~~a~~~~~~~~~~~~-------i~~~~~d~~~~~~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~ 153 (219)
T TIGR02021 81 KAVDISEQMVQMARNRAQGRDVAGN-------VEFEVNDLLSLCGEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVI 153 (219)
T ss_pred EEEECCHHHHHHHHHHHHhcCCCCc-------eEEEECChhhCCCCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEE
Confidence 9999999999999999876554322 389999998888899999999999999876678899999998888999
Q ss_pred EEECCChhhHHHHHHhhccCCCCCCccccccCCHHHHHHHHHHCCCEEEEEeeeecceehhhhhh
Q 020710 254 LSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQKVGWKIRKRGLITTQFYFARLVE 318 (322)
Q Consensus 254 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~vv~~~~~~~~~~f~~~~~ 318 (322)
+.+.+..........+...++......+.++++.++++++++++||+++.......+|+-+.+.|
T Consensus 154 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~~~~~~~~~~~~~~ 218 (219)
T TIGR02021 154 FTFAPKTAWLAFLKMIGELFPGSSRATSAYLHPMTDLERALGELGWKIVREGLVSTGFYNSMLLE 218 (219)
T ss_pred EEECCCchHHHHHHHHHhhCcCcccccceEEecHHHHHHHHHHcCceeeeeecccccchhhHHhc
Confidence 99988776666666666666654444455677999999999999999999998888888887765
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-22 Score=174.36 Aligned_cols=188 Identities=24% Similarity=0.358 Sum_probs=144.1
Q ss_pred CChHHHHHHhchhhHHHHHHHhcCCCcccchhhhhhcCchhHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcC-
Q 020710 92 GDKEVVREYFNNSGFQRWKKIYGETDDVNRVQLDIRLGHSKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQG- 170 (322)
Q Consensus 92 ~~~~~v~~~f~~~~~~~w~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~- 170 (322)
.+.+.|++.|+.. +..|+..+++-+.+.+..|. +.+++.+... ++.+|||||||||.++..+++..
T Consensus 8 ~k~~~v~~vF~~i-----a~~YD~~n~~~S~g~~~~Wr-----~~~i~~~~~~---~g~~vLDva~GTGd~a~~~~k~~g 74 (238)
T COG2226 8 EKQEKVQKVFDKV-----AKKYDLMNDLMSFGLHRLWR-----RALISLLGIK---PGDKVLDVACGTGDMALLLAKSVG 74 (238)
T ss_pred ccHHHHHHHHHhh-----HHHHHhhcccccCcchHHHH-----HHHHHhhCCC---CCCEEEEecCCccHHHHHHHHhcC
Confidence 3457889999987 78888888777888887773 5555555543 68999999999999999999984
Q ss_pred -CEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC---CCCccEEEEcccccccCcchHHHHHHHHHh
Q 020710 171 -AIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL---DGKYDTVVCLDVLIHYPQSKADGMIAHLAS 246 (322)
Q Consensus 171 -~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~ 246 (322)
.+|+|+|+|+.|++.++++..+.+..+ ++|+++|++++ |++||+|+++.+|+++++ .+..|++++|
T Consensus 75 ~g~v~~~D~s~~ML~~a~~k~~~~~~~~--------i~fv~~dAe~LPf~D~sFD~vt~~fglrnv~d--~~~aL~E~~R 144 (238)
T COG2226 75 TGEVVGLDISESMLEVAREKLKKKGVQN--------VEFVVGDAENLPFPDNSFDAVTISFGLRNVTD--IDKALKEMYR 144 (238)
T ss_pred CceEEEEECCHHHHHHHHHHhhccCccc--------eEEEEechhhCCCCCCccCEEEeeehhhcCCC--HHHHHHHHHH
Confidence 689999999999999999999876654 39999999998 899999999999999999 5699999999
Q ss_pred ccCCeEEEE---ECCCh------hhH----H-HHHHhhccCCCCCCccccc-------cCCHHHHHHHHHHCCCEEEE
Q 020710 247 LAEKRLILS---FAPKT------FYY----D-LLKRVGELFPGPSKATRAY-------LHAEADVERALQKVGWKIRK 303 (322)
Q Consensus 247 ~~~~~~il~---~~~~~------~~~----~-~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~~aGf~vv~ 303 (322)
++++||.+. +.... .+. . .+..++.+... ......| +.+.+++.++++++||+.+.
T Consensus 145 VlKpgG~~~vle~~~p~~~~~~~~~~~~~~~~v~P~~g~~~~~-~~~~y~yL~eSi~~~p~~~~l~~~~~~~gf~~i~ 221 (238)
T COG2226 145 VLKPGGRLLVLEFSKPDNPVLRKAYILYYFKYVLPLIGKLVAK-DAEAYEYLAESIRRFPDQEELKQMIEKAGFEEVR 221 (238)
T ss_pred hhcCCeEEEEEEcCCCCchhhHHHHHHHHHHhHhhhhceeeec-ChHHHHHHHHHHHhCCCHHHHHHHHHhcCceEEe
Confidence 988877443 33211 111 1 22333433321 1111111 45899999999999999877
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.8e-23 Score=180.12 Aligned_cols=188 Identities=26% Similarity=0.423 Sum_probs=81.4
Q ss_pred ChHHHHHHhchhhHHHHHHHhcCCCcccchhhhhhcCchhHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc---
Q 020710 93 DKEVVREYFNNSGFQRWKKIYGETDDVNRVQLDIRLGHSKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ--- 169 (322)
Q Consensus 93 ~~~~v~~~f~~~~~~~w~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~--- 169 (322)
+++.|++.||+. +..|+..+.+.+.+.+..|. +.+++.+.. .++.+|||+|||||.++..+++.
T Consensus 5 k~~~v~~~Fd~i-----a~~YD~~n~~ls~g~~~~wr-----~~~~~~~~~---~~g~~vLDv~~GtG~~~~~l~~~~~~ 71 (233)
T PF01209_consen 5 KEQYVRKMFDRI-----APRYDRMNDLLSFGQDRRWR-----RKLIKLLGL---RPGDRVLDVACGTGDVTRELARRVGP 71 (233)
T ss_dssp ------------------------------------------SHHHHHHT-----S--EEEEET-TTSHHHHHHGGGSS-
T ss_pred HHHHHHHHHHHH-----HHHhCCCccccCCcHHHHHH-----HHHHhccCC---CCCCEEEEeCCChHHHHHHHHHHCCC
Confidence 456688888866 88898888887888777774 244454443 36789999999999999999886
Q ss_pred CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC---CCCccEEEEcccccccCcchHHHHHHHHHh
Q 020710 170 GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL---DGKYDTVVCLDVLIHYPQSKADGMIAHLAS 246 (322)
Q Consensus 170 ~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~ 246 (322)
..+|+|+|+|+.|++.|+++....+..+ ++++++|++++ +++||+|+|..+++++++ ..+.+++++|
T Consensus 72 ~~~v~~vD~s~~ML~~a~~k~~~~~~~~--------i~~v~~da~~lp~~d~sfD~v~~~fglrn~~d--~~~~l~E~~R 141 (233)
T PF01209_consen 72 NGKVVGVDISPGMLEVARKKLKREGLQN--------IEFVQGDAEDLPFPDNSFDAVTCSFGLRNFPD--RERALREMYR 141 (233)
T ss_dssp --EEEEEES-HHHHHHHHHHHHHTT--S--------EEEEE-BTTB--S-TT-EEEEEEES-GGG-SS--HHHHHHHHHH
T ss_pred ccEEEEecCCHHHHHHHHHHHHhhCCCC--------eeEEEcCHHHhcCCCCceeEEEHHhhHHhhCC--HHHHHHHHHH
Confidence 3689999999999999999998766542 49999999887 799999999999999999 5599999999
Q ss_pred ccCCeEEEEE---C-CCh-hhHH--------HHHHhhccCCCCCCccccc-------cCCHHHHHHHHHHCCCEEEEE
Q 020710 247 LAEKRLILSF---A-PKT-FYYD--------LLKRVGELFPGPSKATRAY-------LHAEADVERALQKVGWKIRKR 304 (322)
Q Consensus 247 ~~~~~~il~~---~-~~~-~~~~--------~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~~aGf~vv~~ 304 (322)
++++||.+.+ . |.. +... ++..++.++.+. .....| +.+.+++.++++++||+.++.
T Consensus 142 VLkPGG~l~ile~~~p~~~~~~~~~~~y~~~ilP~~g~l~~~~-~~~Y~yL~~Si~~f~~~~~~~~~l~~~Gf~~v~~ 218 (233)
T PF01209_consen 142 VLKPGGRLVILEFSKPRNPLLRALYKFYFKYILPLIGRLLSGD-REAYRYLPESIRRFPSPEELKELLEEAGFKNVEY 218 (233)
T ss_dssp HEEEEEEEEEEEEEB-SSHHHHHHHHH---------------------------------------------------
T ss_pred HcCCCeEEEEeeccCCCCchhhceeeeeecccccccccccccc-cccccccccccccccccccccccccccccccccc
Confidence 9887775433 2 222 1111 112223333221 111222 458899999999999998764
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.3e-22 Score=168.83 Aligned_cols=146 Identities=30% Similarity=0.424 Sum_probs=117.1
Q ss_pred CCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC---CCCccEE
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL---DGKYDTV 223 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~fD~V 223 (322)
.++.+|||||||.|.++..+|+.|++|+|+|+|+++|+.|+.+..+.++.. ++.+.+.+++ .++||+|
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~e~gv~i---------~y~~~~~edl~~~~~~FDvV 128 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARLGASVTGIDASEKPIEVAKLHALESGVNI---------DYRQATVEDLASAGGQFDVV 128 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHCCCeeEEecCChHHHHHHHHhhhhccccc---------cchhhhHHHHHhcCCCccEE
Confidence 368999999999999999999999999999999999999999999888764 7888887776 3799999
Q ss_pred EEcccccccCcchHHHHHHHHHhccCCeEEEEECC--ChhhHH-----HHHHhhccCCCCCCccccccCCHHHHHHHHHH
Q 020710 224 VCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAP--KTFYYD-----LLKRVGELFPGPSKATRAYLHAEADVERALQK 296 (322)
Q Consensus 224 ~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~--~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 296 (322)
+|.++|+|+++++ .+++.+.++.+++|++.+.. .++... ..+.+..+++........ +..++|+..++.+
T Consensus 129 ~cmEVlEHv~dp~--~~~~~c~~lvkP~G~lf~STinrt~ka~~~~i~~ae~vl~~vP~gTH~~~k-~irp~El~~~~~~ 205 (243)
T COG2227 129 TCMEVLEHVPDPE--SFLRACAKLVKPGGILFLSTINRTLKAYLLAIIGAEYVLRIVPKGTHDYRK-FIKPAELIRWLLG 205 (243)
T ss_pred EEhhHHHccCCHH--HHHHHHHHHcCCCcEEEEeccccCHHHHHHHHHHHHHHHHhcCCcchhHHH-hcCHHHHHHhccc
Confidence 9999999999976 89999999988777666542 222111 224555666654444444 4568899999999
Q ss_pred CCCEEEEE
Q 020710 297 VGWKIRKR 304 (322)
Q Consensus 297 aGf~vv~~ 304 (322)
+||++...
T Consensus 206 ~~~~~~~~ 213 (243)
T COG2227 206 ANLKIIDR 213 (243)
T ss_pred CCceEEee
Confidence 99998874
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-20 Score=173.53 Aligned_cols=200 Identities=22% Similarity=0.304 Sum_probs=136.0
Q ss_pred ChHHHHHHhchhhHHHHHHHhcCCCcccch-----hhhhhcCchhHHHHHHHHhhhc--CCCCCCeEEEECCCcccchHH
Q 020710 93 DKEVVREYFNNSGFQRWKKIYGETDDVNRV-----QLDIRLGHSKTVENTMQMLNDE--GSLKGIAVCDAGCGTGSLAIP 165 (322)
Q Consensus 93 ~~~~v~~~f~~~~~~~w~~~y~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~VLDvGcG~G~~~~~ 165 (322)
.++.+.+|||.. .+.|...++........ ..+.......+.+.+++.+... ...++.+|||||||+|.++..
T Consensus 57 ~~~~i~~~Yd~~-~~~~e~~~g~~~h~g~~~~~~~~~~~~~aq~~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~ 135 (340)
T PLN02244 57 LKEGIAEFYDES-SGVWEDVWGEHMHHGYYDPGASRGDHRQAQIRMIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRY 135 (340)
T ss_pred HHHHHHHHHccc-hHHHHHHhCCcceeeccCCCCCcccHHHHHHHHHHHHHHhcCCCcccCCCCCeEEEecCCCCHHHHH
Confidence 456788999975 56777766532211111 1112222223444555554321 113578999999999999999
Q ss_pred HHhc-CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC---CCCccEEEEcccccccCcchHHHHH
Q 020710 166 LAKQ-GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL---DGKYDTVVCLDVLIHYPQSKADGMI 241 (322)
Q Consensus 166 la~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~fD~V~~~~~l~~~~~~~~~~~l 241 (322)
+++. +++|+|+|+|+.|++.++++....+..+++ .|+++|+.++ +++||+|++..+++|+++ ...++
T Consensus 136 La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v-------~~~~~D~~~~~~~~~~FD~V~s~~~~~h~~d--~~~~l 206 (340)
T PLN02244 136 LARKYGANVKGITLSPVQAARANALAAAQGLSDKV-------SFQVADALNQPFEDGQFDLVWSMESGEHMPD--KRKFV 206 (340)
T ss_pred HHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCce-------EEEEcCcccCCCCCCCccEEEECCchhccCC--HHHHH
Confidence 9987 889999999999999999988877664433 8999998765 689999999999999998 45999
Q ss_pred HHHHhccCCeEEEEEC---CCh-------h---hHHHHHHhhccCCCCCCccccccCCHHHHHHHHHHCCCEEEEEeeee
Q 020710 242 AHLASLAEKRLILSFA---PKT-------F---YYDLLKRVGELFPGPSKATRAYLHAEADVERALQKVGWKIRKRGLIT 308 (322)
Q Consensus 242 ~~l~~~~~~~~il~~~---~~~-------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~vv~~~~~~ 308 (322)
+++.+++++||.+.+. ... . ....+..+...+. ...+.+.+++.++++++||++++.+...
T Consensus 207 ~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~------~p~~~s~~~~~~~l~~aGf~~v~~~d~s 280 (340)
T PLN02244 207 QELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYY------LPAWCSTSDYVKLAESLGLQDIKTEDWS 280 (340)
T ss_pred HHHHHHcCCCcEEEEEEecccccccccccCCHHHHHHHHHHHhhcc------CCCCCCHHHHHHHHHHCCCCeeEeeeCc
Confidence 9999988776655431 110 1 1111222221111 1124578999999999999998866544
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.5e-20 Score=165.05 Aligned_cols=149 Identities=21% Similarity=0.321 Sum_probs=109.8
Q ss_pred CCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC---CCCccEE
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL---DGKYDTV 223 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~fD~V 223 (322)
.++.+|||||||+|.++..+++.|++|+|||+|++|++.|+++....+...+ +.|+++|++++ +++||+|
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~-------i~~~~~dae~l~~~~~~FD~V 202 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLHADMDPVTST-------IEYLCTTAEKLADEGRKFDAV 202 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCcccc-------eeEEecCHHHhhhccCCCCEE
Confidence 3567999999999999999999999999999999999999988654433222 38999998775 5789999
Q ss_pred EEcccccccCcchHHHHHHHHHhccCCeEEEEEC-CChhhHHHH------HHhhccCCCCCCccccccCCHHHHHHHHHH
Q 020710 224 VCLDVLIHYPQSKADGMIAHLASLAEKRLILSFA-PKTFYYDLL------KRVGELFPGPSKATRAYLHAEADVERALQK 296 (322)
Q Consensus 224 ~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~-~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 296 (322)
+|.++++|++++. .+++++++++++||.+.+. .+.....+. ..+..+.+. .......+++++++.+++++
T Consensus 203 i~~~vLeHv~d~~--~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~-gth~~~~f~tp~eL~~lL~~ 279 (322)
T PLN02396 203 LSLEVIEHVANPA--EFCKSLSALTIPNGATVLSTINRTMRAYASTIVGAEYILRWLPK-GTHQWSSFVTPEELSMILQR 279 (322)
T ss_pred EEhhHHHhcCCHH--HHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCC-CCcCccCCCCHHHHHHHHHH
Confidence 9999999999955 9999999988766655443 222111111 112222221 11112236799999999999
Q ss_pred CCCEEEEEe
Q 020710 297 VGWKIRKRG 305 (322)
Q Consensus 297 aGf~vv~~~ 305 (322)
+||++++..
T Consensus 280 aGf~i~~~~ 288 (322)
T PLN02396 280 ASVDVKEMA 288 (322)
T ss_pred cCCeEEEEe
Confidence 999998753
|
|
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.4e-20 Score=166.68 Aligned_cols=194 Identities=16% Similarity=0.149 Sum_probs=125.1
Q ss_pred ChHHHHHHhchhhHHHHHHHhcCCCcccchhhhhhcCchhHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc-C-
Q 020710 93 DKEVVREYFNNSGFQRWKKIYGETDDVNRVQLDIRLGHSKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ-G- 170 (322)
Q Consensus 93 ~~~~v~~~f~~~~~~~w~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~-~- 170 (322)
..+.++++|+.. +..|+...+.........|. ..+++++.. .++.+|||||||+|.++..+++. +
T Consensus 31 ~~~~v~~~f~~~-----A~~YD~~~~~~s~g~~~~~r-----~~~~~~~~~---~~~~~VLDlGcGtG~~~~~la~~~~~ 97 (261)
T PLN02233 31 CANERQALFNRI-----APVYDNLNDLLSLGQHRIWK-----RMAVSWSGA---KMGDRVLDLCCGSGDLAFLLSEKVGS 97 (261)
T ss_pred hHHHHHHHHHHh-----hhHHHHhhhhhcCChhHHHH-----HHHHHHhCC---CCCCEEEEECCcCCHHHHHHHHHhCC
Confidence 456788899876 67776544333332222221 222333332 35789999999999999999876 3
Q ss_pred -CEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC---CCCccEEEEcccccccCcchHHHHHHHHHh
Q 020710 171 -AIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL---DGKYDTVVCLDVLIHYPQSKADGMIAHLAS 246 (322)
Q Consensus 171 -~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~ 246 (322)
.+|+|+|+|++|++.|+++....... ...++.++++|++++ +++||+|++..++||++++ ..+++++.+
T Consensus 98 ~~~V~gvD~S~~ml~~A~~r~~~~~~~-----~~~~i~~~~~d~~~lp~~~~sfD~V~~~~~l~~~~d~--~~~l~ei~r 170 (261)
T PLN02233 98 DGKVMGLDFSSEQLAVAASRQELKAKS-----CYKNIEWIEGDATDLPFDDCYFDAITMGYGLRNVVDR--LKAMQEMYR 170 (261)
T ss_pred CCEEEEEECCHHHHHHHHHHhhhhhhc-----cCCCeEEEEcccccCCCCCCCEeEEEEecccccCCCH--HHHHHHHHH
Confidence 58999999999999998876421100 001238999998876 5789999999999999984 599999999
Q ss_pred ccCCeEEEEE---CCCh--hhHHHHH--------HhhccCCCCCC-----ccccccCCHHHHHHHHHHCCCEEEEEee
Q 020710 247 LAEKRLILSF---APKT--FYYDLLK--------RVGELFPGPSK-----ATRAYLHAEADVERALQKVGWKIRKRGL 306 (322)
Q Consensus 247 ~~~~~~il~~---~~~~--~~~~~~~--------~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~aGf~vv~~~~ 306 (322)
++++||.+.+ .... +...+.. .++..+..... .....+++.+++.++++++||++++...
T Consensus 171 vLkpGG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~s~~~f~s~~el~~ll~~aGF~~~~~~~ 248 (261)
T PLN02233 171 VLKPGSRVSILDFNKSTQPFTTSMQEWMIDNVVVPVATGYGLAKEYEYLKSSINEYLTGEELEKLALEAGFSSAKHYE 248 (261)
T ss_pred HcCcCcEEEEEECCCCCcHHHHHHHHHHHhhhhhHHHHHhCChHHHHHHHHHHHhcCCHHHHHHHHHHCCCCEEEEEE
Confidence 8877765433 2211 1111111 11111110000 0001256999999999999999887544
|
|
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.7e-21 Score=162.25 Aligned_cols=148 Identities=28% Similarity=0.448 Sum_probs=108.3
Q ss_pred CCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccCCCCccEEEEccc
Q 020710 149 GIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESLDGKYDTVVCLDV 228 (322)
Q Consensus 149 ~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~fD~V~~~~~ 228 (322)
+.+|||||||+|.++++|++.|++|+|||+++.||+.|+++.......+. .....++|.+.|++...+.||.|+|+++
T Consensus 90 g~~ilDvGCGgGLLSepLArlga~V~GID~s~~~V~vA~~h~~~dP~~~~--~~~y~l~~~~~~~E~~~~~fDaVvcsev 167 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEHKKMDPVLEG--AIAYRLEYEDTDVEGLTGKFDAVVCSEV 167 (282)
T ss_pred CceEEEeccCccccchhhHhhCCeeEeecccHHHHHHHHHhhhcCchhcc--ccceeeehhhcchhhcccccceeeeHHH
Confidence 57899999999999999999999999999999999999999544333221 0111247888999998888999999999
Q ss_pred ccccCcchHHHHHHHHHhccCCeEEEEE--CCChhhHH-----HHHHhhccCCCCCCccccc--cCCHHHHHHHHHHCCC
Q 020710 229 LIHYPQSKADGMIAHLASLAEKRLILSF--APKTFYYD-----LLKRVGELFPGPSKATRAY--LHAEADVERALQKVGW 299 (322)
Q Consensus 229 l~~~~~~~~~~~l~~l~~~~~~~~il~~--~~~~~~~~-----~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~aGf 299 (322)
++|+.++. .+++.+.++++++|.+.+ ...++... +.+.+..+.+ +++|.+ +.+++++..++..+|+
T Consensus 168 leHV~dp~--~~l~~l~~~lkP~G~lfittinrt~lS~~~~i~~~E~vl~ivp---~Gth~~ekfi~p~e~~~~l~~~~~ 242 (282)
T KOG1270|consen 168 LEHVKDPQ--EFLNCLSALLKPNGRLFITTINRTILSFAGTIFLAEIVLRIVP---KGTHTWEKFINPEELTSILNANGA 242 (282)
T ss_pred HHHHhCHH--HHHHHHHHHhCCCCceEeeehhhhHHHhhccccHHHHHHHhcC---CCCcCHHHcCCHHHHHHHHHhcCc
Confidence 99999955 999999988766654433 22221111 1122223333 333333 7799999999999999
Q ss_pred EEEE
Q 020710 300 KIRK 303 (322)
Q Consensus 300 ~vv~ 303 (322)
.+..
T Consensus 243 ~v~~ 246 (282)
T KOG1270|consen 243 QVND 246 (282)
T ss_pred chhh
Confidence 8654
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.7e-20 Score=161.72 Aligned_cols=149 Identities=26% Similarity=0.340 Sum_probs=109.5
Q ss_pred CCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC----CCCccEE
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL----DGKYDTV 223 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~~fD~V 223 (322)
++.+|||+|||+|.++..+++.+.+|+++|+|++|++.|+++....+...++ .++++|+.++ +++||+|
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v-------~~~~~d~~~l~~~~~~~fD~V 116 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAKQAAEAKGVSDNM-------QFIHCAAQDIAQHLETPVDLI 116 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccce-------EEEEcCHHHHhhhcCCCCCEE
Confidence 4679999999999999999999999999999999999999998877654433 8889887654 5789999
Q ss_pred EEcccccccCcchHHHHHHHHHhccCCeEEEEEC---CChhh-HHHH----HHhhccCCCC--CCccccccCCHHHHHHH
Q 020710 224 VCLDVLIHYPQSKADGMIAHLASLAEKRLILSFA---PKTFY-YDLL----KRVGELFPGP--SKATRAYLHAEADVERA 293 (322)
Q Consensus 224 ~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~---~~~~~-~~~~----~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 293 (322)
+|..+++|++++. .+++++.+++++||++.+. ..... ...+ ......+... ......+.++++++.++
T Consensus 117 ~~~~vl~~~~~~~--~~l~~~~~~LkpgG~l~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~ 194 (255)
T PRK11036 117 LFHAVLEWVADPK--SVLQTLWSVLRPGGALSLMFYNANGLLMHNMVAGNFDYVQAGMPKRKKRTLSPDYPLDPEQVYQW 194 (255)
T ss_pred EehhHHHhhCCHH--HHHHHHHHHcCCCeEEEEEEECccHHHHHHHHccChHHHHhcCccccccCCCCCCCCCHHHHHHH
Confidence 9999999999854 8999999988777766432 22111 1110 1111111100 01112235689999999
Q ss_pred HHHCCCEEEEEe
Q 020710 294 LQKVGWKIRKRG 305 (322)
Q Consensus 294 l~~aGf~vv~~~ 305 (322)
++++||+++...
T Consensus 195 l~~aGf~~~~~~ 206 (255)
T PRK11036 195 LEEAGWQIMGKT 206 (255)
T ss_pred HHHCCCeEeeee
Confidence 999999998643
|
|
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.2e-19 Score=159.09 Aligned_cols=154 Identities=25% Similarity=0.388 Sum_probs=107.3
Q ss_pred hhhcCCCCCCeEEEECCCcccchHHHHhc-CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccCCCC
Q 020710 141 LNDEGSLKGIAVCDAGCGTGSLAIPLAKQ-GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESLDGK 219 (322)
Q Consensus 141 l~~~~~~~~~~VLDvGcG~G~~~~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 219 (322)
+.+.+..++.+|||||||.|.++..++++ |++|+|+++|+++.+.+++++.+.++.+++ ++...|..+++++
T Consensus 55 ~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v-------~v~~~D~~~~~~~ 127 (273)
T PF02353_consen 55 CEKLGLKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGLEDRV-------EVRLQDYRDLPGK 127 (273)
T ss_dssp HTTTT--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSSSTE-------EEEES-GGG---S
T ss_pred HHHhCCCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCCCce-------EEEEeeccccCCC
Confidence 33444568999999999999999999999 999999999999999999999999987766 8999999988889
Q ss_pred ccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEEC----CChhhHHH----HHHhhc-cCCCCCCccccccCCHHHH
Q 020710 220 YDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFA----PKTFYYDL----LKRVGE-LFPGPSKATRAYLHAEADV 290 (322)
Q Consensus 220 fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~----~~~~~~~~----~~~~~~-~~~~~~~~~~~~~~~~~~~ 290 (322)
||.|++.++++|+..+....+++.+.+++++||.+.+. ........ ...+.+ +||+ +++.+.+++
T Consensus 128 fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~~~~~~~~~~~i~kyiFPg------g~lps~~~~ 201 (273)
T PF02353_consen 128 FDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHRDPPYHAERRSSSDFIRKYIFPG------GYLPSLSEI 201 (273)
T ss_dssp -SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE--HHHHHCTTCCCHHHHHHTSTT------S---BHHHH
T ss_pred CCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEecccccccchhhcCCCceEEEEeeCCC------CCCCCHHHH
Confidence 99999999999998877899999999988777755431 11111110 011222 2432 335678899
Q ss_pred HHHHHHCCCEEEEEeee
Q 020710 291 ERALQKVGWKIRKRGLI 307 (322)
Q Consensus 291 ~~~l~~aGf~vv~~~~~ 307 (322)
...++++||++...+..
T Consensus 202 ~~~~~~~~l~v~~~~~~ 218 (273)
T PF02353_consen 202 LRAAEDAGLEVEDVENL 218 (273)
T ss_dssp HHHHHHTT-EEEEEEE-
T ss_pred HHHHhcCCEEEEEEEEc
Confidence 99999999999876544
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.8e-19 Score=146.65 Aligned_cols=137 Identities=26% Similarity=0.380 Sum_probs=99.5
Q ss_pred CCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEc---ccccCCCCccEE
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVK---DLESLDGKYDTV 223 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~---d~~~~~~~fD~V 223 (322)
.++.+|||||||+|.++..+++.|.+++|+|+|+.+++. .. . .+... +....+++||+|
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~~~~~~------~~-~-----------~~~~~~~~~~~~~~~~fD~i 82 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRALAKRGFEVTGVDISPQMIEK------RN-V-----------VFDNFDAQDPPFPDGSFDLI 82 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHHHHTTSEEEEEESSHHHHHH------TT-S-----------EEEEEECHTHHCHSSSEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHhh------hh-h-----------hhhhhhhhhhhccccchhhH
Confidence 468899999999999999999999999999999999987 10 0 23333 222337999999
Q ss_pred EEcccccccCcchHHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCCCCCccccccCCHHHHHHHHHHCCCEEEE
Q 020710 224 VCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQKVGWKIRK 303 (322)
Q Consensus 224 ~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~vv~ 303 (322)
+|+.+|+|+++ ...+++.+.++++++|++.+...............+........+..+++.+++.++++++||++++
T Consensus 83 ~~~~~l~~~~d--~~~~l~~l~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G~~iv~ 160 (161)
T PF13489_consen 83 ICNDVLEHLPD--PEEFLKELSRLLKPGGYLVISDPNRDDPSPRSFLKWRYDRPYGGHVHFFSPDELRQLLEQAGFEIVE 160 (161)
T ss_dssp EEESSGGGSSH--HHHHHHHHHHCEEEEEEEEEEEEBTTSHHHHHHHHCCGTCHHTTTTEEBBHHHHHHHHHHTTEEEEE
T ss_pred hhHHHHhhccc--HHHHHHHHHHhcCCCCEEEEEEcCCcchhhhHHHhcCCcCccCceeccCCHHHHHHHHHHCCCEEEE
Confidence 99999999998 5599999999987777665432221111112222222211112455678999999999999999986
|
... |
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.5e-18 Score=151.83 Aligned_cols=152 Identities=20% Similarity=0.337 Sum_probs=121.7
Q ss_pred hhcCCCCCCeEEEECCCcccchHHHHhc-CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccCCCCc
Q 020710 142 NDEGSLKGIAVCDAGCGTGSLAIPLAKQ-GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESLDGKY 220 (322)
Q Consensus 142 ~~~~~~~~~~VLDvGcG~G~~~~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~f 220 (322)
.+.++.++.+|||||||.|.++++++++ |.+|+|+++|+++.+.+++++...++.+++ +++..|..++.+.|
T Consensus 66 ~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v-------~v~l~d~rd~~e~f 138 (283)
T COG2230 66 EKLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNV-------EVRLQDYRDFEEPF 138 (283)
T ss_pred HhcCCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCccc-------EEEecccccccccc
Confidence 3334568999999999999999999998 899999999999999999999999988655 99999999998889
Q ss_pred cEEEEcccccccCcchHHHHHHHHHhccCCeEEEEE---C-CChhhHHHHHHhh-ccCCCCCCccccccCCHHHHHHHHH
Q 020710 221 DTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSF---A-PKTFYYDLLKRVG-ELFPGPSKATRAYLHAEADVERALQ 295 (322)
Q Consensus 221 D~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~---~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~ 295 (322)
|-|++.++++|+.......+++.+.++++++|.+.+ . +..........+. .+|| .+++.+..++.+..+
T Consensus 139 DrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~~~~~~i~~yiFP------gG~lPs~~~i~~~~~ 212 (283)
T COG2230 139 DRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPDQEFRRFPDFIDKYIFP------GGELPSISEILELAS 212 (283)
T ss_pred ceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCCcccccchHHHHHhCCC------CCcCCCHHHHHHHHH
Confidence 999999999999998899999999998866664432 1 2211112222332 2343 345667899999999
Q ss_pred HCCCEEEEEee
Q 020710 296 KVGWKIRKRGL 306 (322)
Q Consensus 296 ~aGf~vv~~~~ 306 (322)
++||.+...+.
T Consensus 213 ~~~~~v~~~~~ 223 (283)
T COG2230 213 EAGFVVLDVES 223 (283)
T ss_pred hcCcEEehHhh
Confidence 99999987543
|
|
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.8e-19 Score=156.32 Aligned_cols=190 Identities=19% Similarity=0.302 Sum_probs=131.0
Q ss_pred CChHHHHHHhchhhHHHHHHHhcCCCcccchhhhhhcCchhHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCC
Q 020710 92 GDKEVVREYFNNSGFQRWKKIYGETDDVNRVQLDIRLGHSKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGA 171 (322)
Q Consensus 92 ~~~~~v~~~f~~~~~~~w~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~ 171 (322)
.+++.++..|++. ...|+.. ... +....+.+++.+... ++.+|||+|||+|.++..+++.+.
T Consensus 4 ~~k~~i~~~F~~a-----a~~Y~~~---~~~-------q~~~a~~l~~~l~~~---~~~~vLDiGcG~G~~~~~l~~~~~ 65 (251)
T PRK10258 4 VNKQAIAAAFGRA-----AAHYEQH---AEL-------QRQSADALLAMLPQR---KFTHVLDAGCGPGWMSRYWRERGS 65 (251)
T ss_pred cCHHHHHHHHHHH-----HHhHhHH---HHH-------HHHHHHHHHHhcCcc---CCCeEEEeeCCCCHHHHHHHHcCC
Confidence 4567788888876 4455432 111 122335566666532 467999999999999999998899
Q ss_pred EEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC---CCCccEEEEcccccccCcchHHHHHHHHHhcc
Q 020710 172 IVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL---DGKYDTVVCLDVLIHYPQSKADGMIAHLASLA 248 (322)
Q Consensus 172 ~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~ 248 (322)
+|+++|+|+.|++.++++... +.++++|++.+ +++||+|+++.++++.++ ...+++++.+++
T Consensus 66 ~v~~~D~s~~~l~~a~~~~~~-------------~~~~~~d~~~~~~~~~~fD~V~s~~~l~~~~d--~~~~l~~~~~~L 130 (251)
T PRK10258 66 QVTALDLSPPMLAQARQKDAA-------------DHYLAGDIESLPLATATFDLAWSNLAVQWCGN--LSTALRELYRVV 130 (251)
T ss_pred eEEEEECCHHHHHHHHhhCCC-------------CCEEEcCcccCcCCCCcEEEEEECchhhhcCC--HHHHHHHHHHHc
Confidence 999999999999999877532 17888998775 578999999999999888 559999999988
Q ss_pred CCeEEEEEC---CChhhHHHHHHhhccCCCCCCccccccCCHHHHHHHHHHCCCEEEEEeeeecceehhhhhhhcc
Q 020710 249 EKRLILSFA---PKTFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQKVGWKIRKRGLITTQFYFARLVEAVP 321 (322)
Q Consensus 249 ~~~~il~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~vv~~~~~~~~~~f~~~~~~~~ 321 (322)
++||++.+. ..++ ..+....... .. ......+.+.+++..++.+.|++. +.....++|.+..+.++
T Consensus 131 k~gG~l~~~~~~~~~~-~el~~~~~~~-~~--~~~~~~~~~~~~l~~~l~~~~~~~---~~~~~~~~f~~~~~~l~ 199 (251)
T PRK10258 131 RPGGVVAFTTLVQGSL-PELHQAWQAV-DE--RPHANRFLPPDAIEQALNGWRYQH---HIQPITLWFDDALSAMR 199 (251)
T ss_pred CCCeEEEEEeCCCCch-HHHHHHHHHh-cc--CCccccCCCHHHHHHHHHhCCcee---eeeEEEEECCCHHHHHH
Confidence 877766543 2222 2222211111 11 111222568999999999888765 33445677877776553
|
|
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.5e-18 Score=150.36 Aligned_cols=181 Identities=18% Similarity=0.209 Sum_probs=122.7
Q ss_pred CChHHHHHHhchhhHHHHHHHhcCCCcccchhhhhhcCchhHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc-C
Q 020710 92 GDKEVVREYFNNSGFQRWKKIYGETDDVNRVQLDIRLGHSKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ-G 170 (322)
Q Consensus 92 ~~~~~v~~~f~~~~~~~w~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~-~ 170 (322)
.+.+.+++.|+.. +..|+....+.....+..|. ..+++.+.... .++.+|||||||||.++..+++. +
T Consensus 6 ~~~~~v~~~f~~i-----A~~YD~~n~~~s~g~~~~wr-----~~~~~~l~~~~-~~~~~VLDlGcGtG~~~~~l~~~~~ 74 (226)
T PRK05785 6 ATWEELQEAYNKI-----PKAYDRANRFISFNQDVRWR-----AELVKTILKYC-GRPKKVLDVAAGKGELSYHFKKVFK 74 (226)
T ss_pred ccHHHHHHHHHhh-----hHHHHHhhhhccCCCcHHHH-----HHHHHHHHHhc-CCCCeEEEEcCCCCHHHHHHHHhcC
Confidence 4556778888865 77787655544444444331 33444443321 23679999999999999999988 6
Q ss_pred CEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC---CCCccEEEEcccccccCcchHHHHHHHHHhc
Q 020710 171 AIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL---DGKYDTVVCLDVLIHYPQSKADGMIAHLASL 247 (322)
Q Consensus 171 ~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~ 247 (322)
.+|+|+|+|++|++.|+++. .++++|++.+ +++||+|++..+++|+++ ..+.+++++++
T Consensus 75 ~~v~gvD~S~~Ml~~a~~~~----------------~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~d--~~~~l~e~~Rv 136 (226)
T PRK05785 75 YYVVALDYAENMLKMNLVAD----------------DKVVGSFEALPFRDKSFDVVMSSFALHASDN--IEKVIAEFTRV 136 (226)
T ss_pred CEEEEECCCHHHHHHHHhcc----------------ceEEechhhCCCCCCCEEEEEecChhhccCC--HHHHHHHHHHH
Confidence 89999999999999997641 4667787665 689999999999999998 45999999998
Q ss_pred cCCeE-EEEECCC-hhh-H--------HHHHHhhccCCCCCCccccc-------cCCHHHHHHHHHHCCCEEEE
Q 020710 248 AEKRL-ILSFAPK-TFY-Y--------DLLKRVGELFPGPSKATRAY-------LHAEADVERALQKVGWKIRK 303 (322)
Q Consensus 248 ~~~~~-il~~~~~-~~~-~--------~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~~aGf~vv~ 303 (322)
+++.+ ++.+... ... . ..+..++.++.+. .....| +.+.+++.++++++| ..++
T Consensus 137 Lkp~~~ile~~~p~~~~~~~~~~~y~~~~~P~~~~~~~~~-~~~Y~yl~~si~~f~~~~~~~~~~~~~~-~~~~ 208 (226)
T PRK05785 137 SRKQVGFIAMGKPDNVIKRKYLSFYLRYIMPYIACLAGAK-CRDYKYIYYIYERLPTNSFHREIFEKYA-DIKV 208 (226)
T ss_pred hcCceEEEEeCCCCcHHHHHHHHHHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHCCCHHHHHHHHHHHh-CceE
Confidence 87654 5555432 111 1 1223344444321 111212 458899999999974 4333
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.2e-18 Score=149.17 Aligned_cols=192 Identities=21% Similarity=0.250 Sum_probs=125.5
Q ss_pred hHHHHHHhchhhHHHHHHHhcCCCcccchhhhhhcCchhHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc---C
Q 020710 94 KEVVREYFNNSGFQRWKKIYGETDDVNRVQLDIRLGHSKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ---G 170 (322)
Q Consensus 94 ~~~v~~~f~~~~~~~w~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~---~ 170 (322)
.+.++++|+.. ...|+.............| .+.++..+.. .++.+|||+|||+|.++..+++. +
T Consensus 4 ~~~~~~~f~~~-----a~~yd~~~~~~~~~~~~~~-----~~~~l~~l~~---~~~~~vLDiGcG~G~~~~~la~~~~~~ 70 (231)
T TIGR02752 4 EERVHKVFEKI-----YKKYDRMNSVISFQRHKKW-----RKDTMKRMNV---QAGTSALDVCCGTADWSIALAEAVGPE 70 (231)
T ss_pred HHHHHHHHHHh-----hhHHhHHHHHhcCCchHHH-----HHHHHHhcCC---CCCCEEEEeCCCcCHHHHHHHHHhCCC
Confidence 45677888875 4445443322222222222 1344454443 35789999999999999999876 3
Q ss_pred CEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC---CCCccEEEEcccccccCcchHHHHHHHHHhc
Q 020710 171 AIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL---DGKYDTVVCLDVLIHYPQSKADGMIAHLASL 247 (322)
Q Consensus 171 ~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~ 247 (322)
.+|+|+|+|+.|++.++++....+.. + ++++.+|+.+. +++||+|++..+++|+++ ..++++++.++
T Consensus 71 ~~v~gvD~s~~~~~~a~~~~~~~~~~-~-------v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~--~~~~l~~~~~~ 140 (231)
T TIGR02752 71 GHVIGLDFSENMLSVGRQKVKDAGLH-N-------VELVHGNAMELPFDDNSFDYVTIGFGLRNVPD--YMQVLREMYRV 140 (231)
T ss_pred CEEEEEECCHHHHHHHHHHHHhcCCC-c-------eEEEEechhcCCCCCCCccEEEEecccccCCC--HHHHHHHHHHH
Confidence 68999999999999999988765442 2 38888888764 578999999999999988 45899999998
Q ss_pred cCCeEEEEEC-C---Chh-hHHH--------HHHhhccCCCCC------CccccccCCHHHHHHHHHHCCCEEEEEeeee
Q 020710 248 AEKRLILSFA-P---KTF-YYDL--------LKRVGELFPGPS------KATRAYLHAEADVERALQKVGWKIRKRGLIT 308 (322)
Q Consensus 248 ~~~~~il~~~-~---~~~-~~~~--------~~~~~~~~~~~~------~~~~~~~~~~~~~~~~l~~aGf~vv~~~~~~ 308 (322)
+++||.+.+. . ... +... .......+.... ......+++.+++.++++++||++++.....
T Consensus 141 Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~ 220 (231)
T TIGR02752 141 VKPGGKVVCLETSQPTIPGFKQLYFFYFKYIMPLFGKLFAKSYKEYSWLQESTRDFPGMDELAEMFQEAGFKDVEVKSYT 220 (231)
T ss_pred cCcCeEEEEEECCCCCChHHHHHHHHHHcChhHHhhHHhcCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCeeEEEEcc
Confidence 8777655432 1 111 1110 011111111000 0011224688999999999999998765554
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.6e-18 Score=150.75 Aligned_cols=184 Identities=15% Similarity=0.220 Sum_probs=123.5
Q ss_pred HhchhhHHHHHHHhcCCCcccchhhhhhcCchhHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc-CCEEEEEeC
Q 020710 100 YFNNSGFQRWKKIYGETDDVNRVQLDIRLGHSKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ-GAIVSASDI 178 (322)
Q Consensus 100 ~f~~~~~~~w~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~-~~~v~gvD~ 178 (322)
.|+..+-.+|...++...- .. +-......+++.+.. .++.+|||||||+|..+..+++. +++|+|+|+
T Consensus 15 ~y~~~~~~~~e~~~g~~~~-~~-------gg~~~~~~~l~~l~l---~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~ 83 (263)
T PTZ00098 15 QYSDEGIKAYEFIFGEDYI-SS-------GGIEATTKILSDIEL---NENSKVLDIGSGLGGGCKYINEKYGAHVHGVDI 83 (263)
T ss_pred ccccccchhHHHHhCCCCC-CC-------CchHHHHHHHHhCCC---CCCCEEEEEcCCCChhhHHHHhhcCCEEEEEEC
Confidence 3555556677777763211 11 111123455555543 46789999999999999999875 789999999
Q ss_pred CHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC---CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEE
Q 020710 179 SAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL---DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILS 255 (322)
Q Consensus 179 s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~ 255 (322)
|+.|++.++++.... .+ +.|.++|+... +++||+|++..+++|++......+++++++++++||.+.
T Consensus 84 s~~~~~~a~~~~~~~---~~-------i~~~~~D~~~~~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lv 153 (263)
T PTZ00098 84 CEKMVNIAKLRNSDK---NK-------IEFEANDILKKDFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILL 153 (263)
T ss_pred CHHHHHHHHHHcCcC---Cc-------eEEEECCcccCCCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEE
Confidence 999999999886531 12 38899998654 578999999999999985457799999999987777665
Q ss_pred ECCChh--hHHHHHHhhccCCCCCCccccccCCHHHHHHHHHHCCCEEEEEeeee
Q 020710 256 FAPKTF--YYDLLKRVGELFPGPSKATRAYLHAEADVERALQKVGWKIRKRGLIT 308 (322)
Q Consensus 256 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~vv~~~~~~ 308 (322)
+..... ...+.......+.. ....+.+.+++.++|+++||+++.....+
T Consensus 154 i~d~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~aGF~~v~~~d~~ 204 (263)
T PTZ00098 154 ITDYCADKIENWDEEFKAYIKK----RKYTLIPIQEYGDLIKSCNFQNVVAKDIS 204 (263)
T ss_pred EEEeccccccCcHHHHHHHHHh----cCCCCCCHHHHHHHHHHCCCCeeeEEeCc
Confidence 432110 00011111111100 01124588999999999999998865543
|
|
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.1e-18 Score=151.51 Aligned_cols=151 Identities=21% Similarity=0.274 Sum_probs=107.5
Q ss_pred HHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcc
Q 020710 135 ENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKD 212 (322)
Q Consensus 135 ~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d 212 (322)
..+++.+.. .++.+|||||||+|.++..+++. +.+|+|+|+|+.|++.|+++ + ++|+++|
T Consensus 19 ~~ll~~l~~---~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~----~-----------~~~~~~d 80 (255)
T PRK14103 19 YDLLARVGA---ERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER----G-----------VDARTGD 80 (255)
T ss_pred HHHHHhCCC---CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc----C-----------CcEEEcC
Confidence 455555553 35789999999999999999987 67999999999999999763 1 2889999
Q ss_pred cccC--CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEEC-CCh---hhHHHHHHhh--ccCC----CCCCcc
Q 020710 213 LESL--DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFA-PKT---FYYDLLKRVG--ELFP----GPSKAT 280 (322)
Q Consensus 213 ~~~~--~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~-~~~---~~~~~~~~~~--~~~~----~~~~~~ 280 (322)
++++ +++||+|+|..++||+++. ..+++++++.+++||.+.+. +.. ........+. ..|. ......
T Consensus 81 ~~~~~~~~~fD~v~~~~~l~~~~d~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 158 (255)
T PRK14103 81 VRDWKPKPDTDVVVSNAALQWVPEH--ADLLVRWVDELAPGSWIAVQVPGNFDAPSHAAVRALARREPWAKLLRDIPFRV 158 (255)
T ss_pred hhhCCCCCCceEEEEehhhhhCCCH--HHHHHHHHHhCCCCcEEEEEcCCCcCChhHHHHHHHhccCchhHHhccccccc
Confidence 8765 5799999999999999984 59999999988777766542 221 1112222211 1121 110111
Q ss_pred ccccCCHHHHHHHHHHCCCEEEEEe
Q 020710 281 RAYLHAEADVERALQKVGWKIRKRG 305 (322)
Q Consensus 281 ~~~~~~~~~~~~~l~~aGf~vv~~~ 305 (322)
...+.+.+++.++|+++||++...+
T Consensus 159 ~~~~~~~~~~~~~l~~aGf~v~~~~ 183 (255)
T PRK14103 159 GAVVQTPAGYAELLTDAGCKVDAWE 183 (255)
T ss_pred CcCCCCHHHHHHHHHhCCCeEEEEe
Confidence 2335689999999999999865433
|
|
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.77 E-value=4e-18 Score=144.08 Aligned_cols=189 Identities=18% Similarity=0.272 Sum_probs=136.4
Q ss_pred HHHHHHhchhhHHHHHHHhcCCCcccchhhhhhcCchhHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc-----
Q 020710 95 EVVREYFNNSGFQRWKKIYGETDDVNRVQLDIRLGHSKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ----- 169 (322)
Q Consensus 95 ~~v~~~f~~~~~~~w~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~----- 169 (322)
.-|.+.|++. +..|+.-++.-......-| -+..+..+... ++.++||++||||..++.+.++
T Consensus 60 ~~V~~vF~~v-----A~~YD~mND~mSlGiHRlW-----Kd~~v~~L~p~---~~m~~lDvaGGTGDiaFril~~v~s~~ 126 (296)
T KOG1540|consen 60 RLVHHVFESV-----AKKYDIMNDAMSLGIHRLW-----KDMFVSKLGPG---KGMKVLDVAGGTGDIAFRILRHVKSQF 126 (296)
T ss_pred hHHHHHHHHH-----HHHHHHHHHHhhcchhHHH-----HHHhhhccCCC---CCCeEEEecCCcchhHHHHHHhhcccc
Confidence 4466777765 6667766665555544434 25555666554 6799999999999999999876
Q ss_pred ---CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC---CCCccEEEEcccccccCcchHHHHHHH
Q 020710 170 ---GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL---DGKYDTVVCLDVLIHYPQSKADGMIAH 243 (322)
Q Consensus 170 ---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~fD~V~~~~~l~~~~~~~~~~~l~~ 243 (322)
+.+|+.+|||++|++.++++..+.++... ....|+++|++++ +.+||..++.+.+.++++ .++.+++
T Consensus 127 ~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~-----~~~~w~~~dAE~LpFdd~s~D~yTiafGIRN~th--~~k~l~E 199 (296)
T KOG1540|consen 127 GDRESKVTVLDINPHMLAVGKQRAKKRPLKAS-----SRVEWVEGDAEDLPFDDDSFDAYTIAFGIRNVTH--IQKALRE 199 (296)
T ss_pred CCCCceEEEEeCCHHHHHHHHHHHhhcCCCcC-----CceEEEeCCcccCCCCCCcceeEEEecceecCCC--HHHHHHH
Confidence 26799999999999999999977655432 1138999999998 799999999999999999 5599999
Q ss_pred HHhccCCeEEEEEC---CCh----------hhHHHHHHhhccCCCCCCcc------ccccCCHHHHHHHHHHCCCEEEE
Q 020710 244 LASLAEKRLILSFA---PKT----------FYYDLLKRVGELFPGPSKAT------RAYLHAEADVERALQKVGWKIRK 303 (322)
Q Consensus 244 l~~~~~~~~il~~~---~~~----------~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~l~~aGf~vv~ 303 (322)
.+|++++|+.+.|. .-. +..+.+..+++++.+..+.. -..+.+.++++.+++++||..+.
T Consensus 200 AYRVLKpGGrf~cLeFskv~~~~l~~fy~~ysf~VlpvlG~~iagd~~sYqYLveSI~rfp~qe~f~~miedaGF~~~~ 278 (296)
T KOG1540|consen 200 AYRVLKPGGRFSCLEFSKVENEPLKWFYDQYSFDVLPVLGEIIAGDRKSYQYLVESIRRFPPQEEFASMIEDAGFSSVN 278 (296)
T ss_pred HHHhcCCCcEEEEEEccccccHHHHHHHHhhhhhhhchhhHhhhhhHhhhhhHHhhhhcCCCHHHHHHHHHHcCCcccc
Confidence 99999888866542 111 11223344555544322110 01145889999999999999886
|
|
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.5e-18 Score=143.14 Aligned_cols=148 Identities=24% Similarity=0.335 Sum_probs=110.1
Q ss_pred HHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccc
Q 020710 135 ENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLE 214 (322)
Q Consensus 135 ~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 214 (322)
..+++.+... ++.+|||+|||+|.++..|+++|++|+|+|+|+.|++.++++....+..+ +++.+.|+.
T Consensus 20 ~~l~~~l~~~---~~~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~~~~~~~~~~--------v~~~~~d~~ 88 (197)
T PRK11207 20 SEVLEAVKVV---KPGKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLERIKAAENLDN--------LHTAVVDLN 88 (197)
T ss_pred HHHHHhcccC---CCCcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCCc--------ceEEecChh
Confidence 3455555543 56899999999999999999999999999999999999999887765532 378888887
Q ss_pred cC--CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEE-EECCChhhHHHHHHhhccCCCCCCccccccCCHHHHH
Q 020710 215 SL--DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLIL-SFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADVE 291 (322)
Q Consensus 215 ~~--~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (322)
+. +++||+|+|+.++||++++....+++.+.+++++||.+ .+..... +-.+. .....+.++.+++.
T Consensus 89 ~~~~~~~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~---------~~~~~--~~~~~~~~~~~el~ 157 (197)
T PRK11207 89 NLTFDGEYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDT---------ADYPC--TVGFPFAFKEGELR 157 (197)
T ss_pred hCCcCCCcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecC---------CCCCC--CCCCCCccCHHHHH
Confidence 64 57899999999999988766889999999988777753 2211000 00000 01112456889999
Q ss_pred HHHHHCCCEEEEEee
Q 020710 292 RALQKVGWKIRKRGL 306 (322)
Q Consensus 292 ~~l~~aGf~vv~~~~ 306 (322)
++++ ||++++.+.
T Consensus 158 ~~~~--~~~~~~~~~ 170 (197)
T PRK11207 158 RYYE--GWEMVKYNE 170 (197)
T ss_pred HHhC--CCeEEEeeC
Confidence 9997 999888643
|
|
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.7e-17 Score=147.73 Aligned_cols=141 Identities=21% Similarity=0.195 Sum_probs=104.2
Q ss_pred CCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC---CCCccE
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL---DGKYDT 222 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~fD~ 222 (322)
++.+|||||||+|.++..+++. +.+|+++|+|+.|++.++++.... + ++++.+|++++ +++||+
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~----~-------i~~i~gD~e~lp~~~~sFDv 181 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK----E-------CKIIEGDAEDLPFPTDYADR 181 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhcc----C-------CeEEeccHHhCCCCCCceeE
Confidence 4679999999999999888875 568999999999999999875421 1 27899998765 578999
Q ss_pred EEEcccccccCcchHHHHHHHHHhccCCeEEEEECCChhhHHHHHH-hhccCCCCCCccccccCCHHHHHHHHHHCCCEE
Q 020710 223 VVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKR-VGELFPGPSKATRAYLHAEADVERALQKVGWKI 301 (322)
Q Consensus 223 V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v 301 (322)
|++..+++|++++. .+++++.+++++||.+.+........+..+ ....+ ..+.+.+++.++++++||+.
T Consensus 182 VIs~~~L~~~~d~~--~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~--------~~~~t~eEl~~lL~~aGF~~ 251 (340)
T PLN02490 182 YVSAGSIEYWPDPQ--RGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVW--------MLFPKEEEYIEWFTKAGFKD 251 (340)
T ss_pred EEEcChhhhCCCHH--HHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhh--------ccCCCHHHHHHHHHHCCCeE
Confidence 99999999999854 899999998877765543211110111111 11111 11347899999999999999
Q ss_pred EEEeeeec
Q 020710 302 RKRGLITT 309 (322)
Q Consensus 302 v~~~~~~~ 309 (322)
++...+..
T Consensus 252 V~i~~i~~ 259 (340)
T PLN02490 252 VKLKRIGP 259 (340)
T ss_pred EEEEEcCh
Confidence 98766543
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.3e-17 Score=150.23 Aligned_cols=156 Identities=19% Similarity=0.232 Sum_probs=104.8
Q ss_pred HHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCC-EEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEccc
Q 020710 135 ENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGA-IVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDL 213 (322)
Q Consensus 135 ~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~ 213 (322)
..++..+.. .++.+|||||||+|.++..++..|+ .|+|+|+|+.|+..++..........+ +.+...++
T Consensus 111 ~~~l~~l~~---~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~-------v~~~~~~i 180 (314)
T TIGR00452 111 DRVLPHLSP---LKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKR-------AILEPLGI 180 (314)
T ss_pred HHHHHhcCC---CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCC-------eEEEECCH
Confidence 445555433 3678999999999999999988876 699999999999765432221111111 26777777
Q ss_pred ccC--CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEEC----CChhhHHHH--HHhhccCCCCCCccccccC
Q 020710 214 ESL--DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFA----PKTFYYDLL--KRVGELFPGPSKATRAYLH 285 (322)
Q Consensus 214 ~~~--~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~----~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 285 (322)
+++ ...||+|+|..+++|++++. .+++++++.+++||.+.+. ......... ...... . ...+++
T Consensus 181 e~lp~~~~FD~V~s~gvL~H~~dp~--~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~-----~-nv~flp 252 (314)
T TIGR00452 181 EQLHELYAFDTVFSMGVLYHRKSPL--EHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKM-----K-NVYFIP 252 (314)
T ss_pred HHCCCCCCcCEEEEcchhhccCCHH--HHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHhc-----c-ccccCC
Confidence 766 46899999999999999854 8999999988766655432 111100000 000000 0 011245
Q ss_pred CHHHHHHHHHHCCCEEEEEeeee
Q 020710 286 AEADVERALQKVGWKIRKRGLIT 308 (322)
Q Consensus 286 ~~~~~~~~l~~aGf~vv~~~~~~ 308 (322)
+.+++.++++++||+.+++....
T Consensus 253 S~~~L~~~L~~aGF~~V~i~~~~ 275 (314)
T TIGR00452 253 SVSALKNWLEKVGFENFRILDVL 275 (314)
T ss_pred CHHHHHHHHHHCCCeEEEEEecc
Confidence 88999999999999999865443
|
Known examples to date are restricted to the proteobacteria. |
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.8e-17 Score=150.78 Aligned_cols=158 Identities=19% Similarity=0.220 Sum_probs=106.9
Q ss_pred HHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCC-EEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEccc
Q 020710 135 ENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGA-IVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDL 213 (322)
Q Consensus 135 ~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~ 213 (322)
..++..+.. .++.+|||||||+|.++..+++.|. .|+|+|+|+.|+..++......+... ++.|+.+|+
T Consensus 112 ~~l~~~l~~---l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~-------~i~~~~~d~ 181 (322)
T PRK15068 112 DRVLPHLSP---LKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQ-------RAHLLPLGI 181 (322)
T ss_pred HHHHHhhCC---CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCC-------CeEEEeCCH
Confidence 455555543 3578999999999999999999875 59999999999876544332211111 238898888
Q ss_pred ccC--CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEEC----CChhhHHHHHHhhccCCCCCCccccccCCH
Q 020710 214 ESL--DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFA----PKTFYYDLLKRVGELFPGPSKATRAYLHAE 287 (322)
Q Consensus 214 ~~~--~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (322)
+++ +++||+|+|..+++|..++. .+++++++.+++||.+.+. +......... ...+... . ...+..+.
T Consensus 182 e~lp~~~~FD~V~s~~vl~H~~dp~--~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p--~~~y~~~-~-~~~~lps~ 255 (322)
T PRK15068 182 EQLPALKAFDTVFSMGVLYHRRSPL--DHLKQLKDQLVPGGELVLETLVIDGDENTVLVP--GDRYAKM-R-NVYFIPSV 255 (322)
T ss_pred HHCCCcCCcCEEEECChhhccCCHH--HHHHHHHHhcCCCcEEEEEEEEecCCCccccCc--hhHHhcC-c-cceeCCCH
Confidence 776 68899999999999998854 8999999988777655442 1110000000 0000000 0 01124588
Q ss_pred HHHHHHHHHCCCEEEEEeeee
Q 020710 288 ADVERALQKVGWKIRKRGLIT 308 (322)
Q Consensus 288 ~~~~~~l~~aGf~vv~~~~~~ 308 (322)
+++.++|+++||++++.....
T Consensus 256 ~~l~~~L~~aGF~~i~~~~~~ 276 (322)
T PRK15068 256 PALKNWLERAGFKDVRIVDVS 276 (322)
T ss_pred HHHHHHHHHcCCceEEEEeCC
Confidence 999999999999998865443
|
|
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.1e-17 Score=143.12 Aligned_cols=148 Identities=22% Similarity=0.315 Sum_probs=101.5
Q ss_pred CCCeEEEECCCcccchHHHHhc----C--CEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC---CC
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQ----G--AIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL---DG 218 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~----~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~ 218 (322)
++.+|||||||+|.++..|++. | .+|+|+|+|+.|++.|+++....+. .+.+.+...+ ++
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~-----------~~~~~~~~~l~~~~~ 128 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGV-----------TFRQAVSDELVAEGE 128 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCC-----------eEEEEecccccccCC
Confidence 5679999999999999888752 3 5899999999999999887643322 5555544333 67
Q ss_pred CccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEE-CCChhhHHHHHHhhc------cCCCCCCccccccCCHHHHH
Q 020710 219 KYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSF-APKTFYYDLLKRVGE------LFPGPSKATRAYLHAEADVE 291 (322)
Q Consensus 219 ~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~-~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~ 291 (322)
+||+|+|+.++||+++++...+++++.+++++..++.. ......+........ +...........+++.+++.
T Consensus 129 ~fD~V~~~~~lhh~~d~~~~~~l~~~~r~~~~~~~i~dl~~~~~~~~~~~~~~~~~~~~~~~~~d~~~s~~~~~~~~el~ 208 (232)
T PRK06202 129 RFDVVTSNHFLHHLDDAEVVRLLADSAALARRLVLHNDLIRSRLAYALFWAGTRLLSRSSFVHTDGLLSVRRSYTPAELA 208 (232)
T ss_pred CccEEEECCeeecCChHHHHHHHHHHHHhcCeeEEEeccccCHHHHHHHHHHHHHhccCceeeccchHHHHhhcCHHHHH
Confidence 99999999999999987777899999998875444432 222222211111111 11111111122356999999
Q ss_pred HHHHHCCCEEEEEeee
Q 020710 292 RALQKVGWKIRKRGLI 307 (322)
Q Consensus 292 ~~l~~aGf~vv~~~~~ 307 (322)
+++++ ||++......
T Consensus 209 ~ll~~-Gf~~~~~~~~ 223 (232)
T PRK06202 209 ALAPQ-GWRVERQWPF 223 (232)
T ss_pred HHhhC-CCeEEeccce
Confidence 99999 9998876544
|
|
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.7e-17 Score=137.49 Aligned_cols=148 Identities=16% Similarity=0.239 Sum_probs=108.4
Q ss_pred HHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccc
Q 020710 135 ENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLE 214 (322)
Q Consensus 135 ~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 214 (322)
..+++.+... ++.+|||+|||+|.++..++++|++|+|+|+|+.|++.++++....++.. .+.+.|+.
T Consensus 20 ~~l~~~~~~~---~~~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~~~~~~~~~~v---------~~~~~d~~ 87 (195)
T TIGR00477 20 SAVREAVKTV---APCKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVLDMKARENLPL---------RTDAYDIN 87 (195)
T ss_pred HHHHHHhccC---CCCcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHhCCCc---------eeEeccch
Confidence 4555555543 46799999999999999999999999999999999999998887665432 67777765
Q ss_pred cC--CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCCCCCccccccCCHHHHHH
Q 020710 215 SL--DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADVER 292 (322)
Q Consensus 215 ~~--~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (322)
.. +++||+|+++.+++|++.+....+++.+++++++||++.+.... .. ...+ ......+.++++++.+
T Consensus 88 ~~~~~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~~------~~--~~~~--~~~~~~~~~~~~el~~ 157 (195)
T TIGR00477 88 AAALNEDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVAAM------DT--ADYP--CHMPFSFTFKEDELRQ 157 (195)
T ss_pred hccccCCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEEec------cc--CCCC--CCCCcCccCCHHHHHH
Confidence 43 57899999999999998766789999999988777753321100 00 0011 0112234678999999
Q ss_pred HHHHCCCEEEEEee
Q 020710 293 ALQKVGWKIRKRGL 306 (322)
Q Consensus 293 ~l~~aGf~vv~~~~ 306 (322)
++. +|+++....
T Consensus 158 ~f~--~~~~~~~~e 169 (195)
T TIGR00477 158 YYA--DWELLKYNE 169 (195)
T ss_pred HhC--CCeEEEeec
Confidence 996 599888653
|
Part of a tellurite-reducing operon tehA and tehB |
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.8e-17 Score=145.76 Aligned_cols=161 Identities=17% Similarity=0.176 Sum_probs=111.4
Q ss_pred CCCCeEEEECCCcccchHHHHhc----CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-CCCcc
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQ----GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-DGKYD 221 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~----~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~fD 221 (322)
.++.+|||||||+|..+..+++. +++|+|+|+|+.|++.|++++...+...++ +++++|+.+. .+.+|
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v-------~~~~~d~~~~~~~~~D 127 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPV-------DVIEGDIRDIAIENAS 127 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCe-------EEEeCChhhCCCCCCC
Confidence 35789999999999999888762 679999999999999999999876654433 8999998876 35699
Q ss_pred EEEEcccccccCcchHHHHHHHHHhccCCeEEEEECC-----ChhhHH-HHHHhhccC--CCCCC---------c-cccc
Q 020710 222 TVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAP-----KTFYYD-LLKRVGELF--PGPSK---------A-TRAY 283 (322)
Q Consensus 222 ~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~-----~~~~~~-~~~~~~~~~--~~~~~---------~-~~~~ 283 (322)
+|+++.++||++++....+++++++.+++||.+.+.. ...... +......+. .+... . ....
T Consensus 128 ~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~~~~~~~~~~~~~~~~~~~~~g~s~~ei~~~~~~~~~~~~ 207 (247)
T PRK15451 128 MVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGELLFNMHHDFKRANGYSELEISQKRSMLENVML 207 (247)
T ss_pred EEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecCCCcchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcc
Confidence 9999999999987667799999999887777654421 111111 111000000 01000 0 0111
Q ss_pred cCCHHHHHHHHHHCCCEEEEEeeeecceehhhh
Q 020710 284 LHAEADVERALQKVGWKIRKRGLITTQFYFARL 316 (322)
Q Consensus 284 ~~~~~~~~~~l~~aGf~vv~~~~~~~~~~f~~~ 316 (322)
..+.++..++|+++||+.+.+. ...+.|..+
T Consensus 208 ~~~~~~~~~~L~~aGF~~v~~~--~~~~~f~~~ 238 (247)
T PRK15451 208 TDSVETHKARLHKAGFEHSELW--FQCFNFGSL 238 (247)
T ss_pred cCCHHHHHHHHHHcCchhHHHH--HHHHhHHHH
Confidence 2489999999999999976543 334444443
|
|
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.3e-17 Score=143.55 Aligned_cols=151 Identities=17% Similarity=0.165 Sum_probs=107.8
Q ss_pred CCCCeEEEECCCcccchHHHHhc----CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-CCCcc
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQ----GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-DGKYD 221 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~----~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~fD 221 (322)
.++.+|||||||+|.++..+++. +++++|+|+|+.|++.|++++...+...++ +++++|+.+. ...+|
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v-------~~~~~d~~~~~~~~~d 124 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPV-------EILCNDIRHVEIKNAS 124 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCe-------EEEECChhhCCCCCCC
Confidence 35679999999999999999874 678999999999999999998765433333 8999999876 35699
Q ss_pred EEEEcccccccCcchHHHHHHHHHhccCCeEEEEECCC-----hhhHHHHHHhhccC---CCCCC----------ccccc
Q 020710 222 TVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPK-----TFYYDLLKRVGELF---PGPSK----------ATRAY 283 (322)
Q Consensus 222 ~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~-----~~~~~~~~~~~~~~---~~~~~----------~~~~~ 283 (322)
+|++..++||++++....+++++.+.+++||.+.+... ......+..+...+ .+... .....
T Consensus 125 ~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 204 (239)
T TIGR00740 125 MVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHLLIDLHHQFKRANGYSELEISQKRTALENVMR 204 (239)
T ss_pred EEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccCCCHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhccCC
Confidence 99999999999876677999999998877776655321 11111111111000 00000 01122
Q ss_pred cCCHHHHHHHHHHCCCEEEEE
Q 020710 284 LHAEADVERALQKVGWKIRKR 304 (322)
Q Consensus 284 ~~~~~~~~~~l~~aGf~vv~~ 304 (322)
..+.++++++++++||+.+++
T Consensus 205 ~~s~~~~~~~l~~aGF~~~~~ 225 (239)
T TIGR00740 205 TDSIETHKARLKNVGFSHVEL 225 (239)
T ss_pred CCCHHHHHHHHHHcCCchHHH
Confidence 458999999999999996653
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.2e-16 Score=153.78 Aligned_cols=150 Identities=19% Similarity=0.216 Sum_probs=109.6
Q ss_pred HHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc-CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEccc
Q 020710 135 ENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ-GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDL 213 (322)
Q Consensus 135 ~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~ 213 (322)
+.+++.+.. .++.+|||||||+|..+..+++. +++|+|+|+|+.|++.|+++..... .+ +.|.++|+
T Consensus 256 e~l~~~~~~---~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~~--~~-------v~~~~~d~ 323 (475)
T PLN02336 256 KEFVDKLDL---KPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGRK--CS-------VEFEVADC 323 (475)
T ss_pred HHHHHhcCC---CCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcCC--Cc-------eEEEEcCc
Confidence 445554432 35779999999999999999876 7899999999999999988765322 22 38999998
Q ss_pred ccC---CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEECC-----ChhhHHHHHHhhccCCCCCCccccccC
Q 020710 214 ESL---DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAP-----KTFYYDLLKRVGELFPGPSKATRAYLH 285 (322)
Q Consensus 214 ~~~---~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (322)
... +++||+|+|..+++|++++. .+++++++++++||.+.+.. ......+...+... ...++
T Consensus 324 ~~~~~~~~~fD~I~s~~~l~h~~d~~--~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~--------g~~~~ 393 (475)
T PLN02336 324 TKKTYPDNSFDVIYSRDTILHIQDKP--ALFRSFFKWLKPGGKVLISDYCRSPGTPSPEFAEYIKQR--------GYDLH 393 (475)
T ss_pred ccCCCCCCCEEEEEECCcccccCCHH--HHHHHHHHHcCCCeEEEEEEeccCCCCCcHHHHHHHHhc--------CCCCC
Confidence 764 57899999999999999854 99999999887777665431 11111111111111 11245
Q ss_pred CHHHHHHHHHHCCCEEEEEee
Q 020710 286 AEADVERALQKVGWKIRKRGL 306 (322)
Q Consensus 286 ~~~~~~~~l~~aGf~vv~~~~ 306 (322)
+.+++.++++++||+++..+.
T Consensus 394 ~~~~~~~~l~~aGF~~i~~~d 414 (475)
T PLN02336 394 DVQAYGQMLKDAGFDDVIAED 414 (475)
T ss_pred CHHHHHHHHHHCCCeeeeeec
Confidence 789999999999999987654
|
|
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.1e-16 Score=133.35 Aligned_cols=148 Identities=23% Similarity=0.276 Sum_probs=104.0
Q ss_pred HHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccc
Q 020710 135 ENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLE 214 (322)
Q Consensus 135 ~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 214 (322)
..+++.+... +++++||+|||.|+++.+|+++|+.|+++|+|+..++.+++.+.+.++.. +..+.|+.
T Consensus 20 s~v~~a~~~~---~~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~~~l~i---------~~~~~Dl~ 87 (192)
T PF03848_consen 20 SEVLEAVPLL---KPGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEEEGLDI---------RTRVADLN 87 (192)
T ss_dssp HHHHHHCTTS----SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHHTT-TE---------EEEE-BGC
T ss_pred HHHHHHHhhc---CCCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhhcCcee---------EEEEecch
Confidence 3455555443 57899999999999999999999999999999999999998888777764 88889987
Q ss_pred cC--CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCCCCCccccccCCHHHHHH
Q 020710 215 SL--DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADVER 292 (322)
Q Consensus 215 ~~--~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (322)
+. ++.||+|++..+++|++.+....+++.+.+.+++||++.+...... ..++. .....+.+.+.|+.+
T Consensus 88 ~~~~~~~yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~~~~--------~d~p~--~~~~~f~~~~~EL~~ 157 (192)
T PF03848_consen 88 DFDFPEEYDFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTFMET--------PDYPC--PSPFPFLLKPGELRE 157 (192)
T ss_dssp CBS-TTTEEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEEB----------SSS----SS--S--B-TTHHHH
T ss_pred hccccCCcCEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEeccc--------CCCCC--CCCCCcccCHHHHHH
Confidence 65 6889999999999999988889999999988777765543211100 01111 112234456778888
Q ss_pred HHHHCCCEEEEEee
Q 020710 293 ALQKVGWKIRKRGL 306 (322)
Q Consensus 293 ~l~~aGf~vv~~~~ 306 (322)
.+. ||++++.+.
T Consensus 158 ~y~--dW~il~y~E 169 (192)
T PF03848_consen 158 YYA--DWEILKYNE 169 (192)
T ss_dssp HTT--TSEEEEEEE
T ss_pred HhC--CCeEEEEEc
Confidence 876 799987433
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.1e-17 Score=136.22 Aligned_cols=100 Identities=35% Similarity=0.535 Sum_probs=85.6
Q ss_pred CCCeEEEECCCcccchHHHHh-c--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccCC----CCc
Q 020710 148 KGIAVCDAGCGTGSLAIPLAK-Q--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESLD----GKY 220 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~-~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~f 220 (322)
++.+|||+|||+|.++..+++ . +.+++|+|+|+.|++.|++++...+..+ ++|.++|+.+++ +.|
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~n--------i~~~~~d~~~l~~~~~~~~ 74 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDN--------IEFIQGDIEDLPQELEEKF 74 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTT--------EEEEESBTTCGCGCSSTTE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccc--------cceEEeehhccccccCCCe
Confidence 578999999999999999994 4 6789999999999999999988877652 399999998875 689
Q ss_pred cEEEEcccccccCcchHHHHHHHHHhccCCeEEEEEC
Q 020710 221 DTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFA 257 (322)
Q Consensus 221 D~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~ 257 (322)
|+|++..+++|+++.. .+++.+.+++++++++.+.
T Consensus 75 D~I~~~~~l~~~~~~~--~~l~~~~~~lk~~G~~i~~ 109 (152)
T PF13847_consen 75 DIIISNGVLHHFPDPE--KVLKNIIRLLKPGGILIIS 109 (152)
T ss_dssp EEEEEESTGGGTSHHH--HHHHHHHHHEEEEEEEEEE
T ss_pred eEEEEcCchhhccCHH--HHHHHHHHHcCCCcEEEEE
Confidence 9999999999999854 9999999988777766543
|
... |
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.6e-16 Score=138.90 Aligned_cols=194 Identities=25% Similarity=0.300 Sum_probs=124.2
Q ss_pred CChHHHHHHhchhhHHHHHHHhcCCCcccchhhhhhcCchhHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcC-
Q 020710 92 GDKEVVREYFNNSGFQRWKKIYGETDDVNRVQLDIRLGHSKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQG- 170 (322)
Q Consensus 92 ~~~~~v~~~f~~~~~~~w~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~- 170 (322)
.+++.++++|+.. +..|+........ .........++..+... ++.+|||+|||+|.++..+++.+
T Consensus 8 ~~~~~~~~~~~~~-----~~~y~~~~~~~~~-----~~~~~~~~~~~~~~~~~---~~~~vldiG~G~G~~~~~l~~~~~ 74 (239)
T PRK00216 8 EKQEKVAEMFDSI-----APKYDLMNDLLSF-----GLHRVWRRKTIKWLGVR---PGDKVLDLACGTGDLAIALAKAVG 74 (239)
T ss_pred cchHHHHHHHHHh-----hhhHHHHHHHHhc-----CCcHHHHHHHHHHhCCC---CCCeEEEeCCCCCHHHHHHHHHcC
Confidence 3456777888765 4444422111000 01112234445554432 56899999999999999998874
Q ss_pred --CEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC---CCCccEEEEcccccccCcchHHHHHHHHH
Q 020710 171 --AIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL---DGKYDTVVCLDVLIHYPQSKADGMIAHLA 245 (322)
Q Consensus 171 --~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~fD~V~~~~~l~~~~~~~~~~~l~~l~ 245 (322)
.+++++|+++.+++.+++++...+...+ +.+..+|+.+. ++.||+|++..+++|+++ ...+++.+.
T Consensus 75 ~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~-------~~~~~~d~~~~~~~~~~~D~I~~~~~l~~~~~--~~~~l~~~~ 145 (239)
T PRK00216 75 KTGEVVGLDFSEGMLAVGREKLRDLGLSGN-------VEFVQGDAEALPFPDNSFDAVTIAFGLRNVPD--IDKALREMY 145 (239)
T ss_pred CCCeEEEEeCCHHHHHHHHHhhcccccccC-------eEEEecccccCCCCCCCccEEEEecccccCCC--HHHHHHHHH
Confidence 7899999999999999998865433332 28888888765 578999999999999988 559999999
Q ss_pred hccCCeEEEEEC----CChh-hHH--------HHHHhhccCCCCCCcc------ccccCCHHHHHHHHHHCCCEEEEEee
Q 020710 246 SLAEKRLILSFA----PKTF-YYD--------LLKRVGELFPGPSKAT------RAYLHAEADVERALQKVGWKIRKRGL 306 (322)
Q Consensus 246 ~~~~~~~il~~~----~~~~-~~~--------~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~l~~aGf~vv~~~~ 306 (322)
++++++|++.+. +... ... .....+..+....... ...+++.+++.++++++||++++...
T Consensus 146 ~~L~~gG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~ 225 (239)
T PRK00216 146 RVLKPGGRLVILEFSKPTNPPLKKAYDFYLFKVLPLIGKLISKNAEAYSYLAESIRAFPDQEELAAMLEEAGFERVRYRN 225 (239)
T ss_pred HhccCCcEEEEEEecCCCchHHHHHHHHHHHhhhHHHHHHHcCCcHHHHHHHHHHHhCCCHHHHHHHHHhCCCceeeeee
Confidence 987666644331 1110 111 1111111111100000 02245788999999999999888665
Q ss_pred e
Q 020710 307 I 307 (322)
Q Consensus 307 ~ 307 (322)
.
T Consensus 226 ~ 226 (239)
T PRK00216 226 L 226 (239)
T ss_pred e
Confidence 4
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.71 E-value=8e-17 Score=124.10 Aligned_cols=103 Identities=33% Similarity=0.415 Sum_probs=85.2
Q ss_pred CCCeEEEECCCcccchHHHHh--cCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEccc-ccC--CCCccE
Q 020710 148 KGIAVCDAGCGTGSLAIPLAK--QGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDL-ESL--DGKYDT 222 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~-~~~--~~~fD~ 222 (322)
|+.+|||||||+|.++..+++ .+++|+|+|+|+.|++.++++....+...++ .|+++|+ ... .+.||+
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i-------~~~~~d~~~~~~~~~~~D~ 73 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRI-------TFVQGDAEFDPDFLEPFDL 73 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTE-------EEEESCCHGGTTTSSCEEE
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCe-------EEEECccccCcccCCCCCE
Confidence 478999999999999999999 5999999999999999999999666655544 9999999 332 678999
Q ss_pred EEEcc-cccccCc-chHHHHHHHHHhccCCeEEEEEC
Q 020710 223 VVCLD-VLIHYPQ-SKADGMIAHLASLAEKRLILSFA 257 (322)
Q Consensus 223 V~~~~-~l~~~~~-~~~~~~l~~l~~~~~~~~il~~~ 257 (322)
|++.. +++++.. ++...+++++++.+++|+++.+.
T Consensus 74 v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~ 110 (112)
T PF12847_consen 74 VICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVIN 110 (112)
T ss_dssp EEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEECCCccccccchhHHHHHHHHHHHhcCCCcEEEEE
Confidence 99999 5655543 45678999999988888877653
|
... |
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.2e-16 Score=139.98 Aligned_cols=151 Identities=24% Similarity=0.282 Sum_probs=105.7
Q ss_pred HHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcc
Q 020710 135 ENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKD 212 (322)
Q Consensus 135 ~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d 212 (322)
..++..+.. .++.+|||||||+|.++..+++. +.+|+|+|+|+.|++.++++... +.|+.+|
T Consensus 21 ~~ll~~~~~---~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~-------------~~~~~~d 84 (258)
T PRK01683 21 RDLLARVPL---ENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLPD-------------CQFVEAD 84 (258)
T ss_pred HHHHhhCCC---cCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCC-------------CeEEECc
Confidence 455555543 35789999999999999999987 57899999999999999877521 2788999
Q ss_pred cccC--CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEE-CCChh---hHHHHHHhhc--cCCC---CCCccc
Q 020710 213 LESL--DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSF-APKTF---YYDLLKRVGE--LFPG---PSKATR 281 (322)
Q Consensus 213 ~~~~--~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~-~~~~~---~~~~~~~~~~--~~~~---~~~~~~ 281 (322)
+..+ +++||+|+++.+++|+++. ..+++++.+++++||.+.+ .+... .......+.. .|.. ......
T Consensus 85 ~~~~~~~~~fD~v~~~~~l~~~~d~--~~~l~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 162 (258)
T PRK01683 85 IASWQPPQALDLIFANASLQWLPDH--LELFPRLVSLLAPGGVLAVQMPDNLDEPSHVLMREVAENGPWEQNLPDRGARR 162 (258)
T ss_pred hhccCCCCCccEEEEccChhhCCCH--HHHHHHHHHhcCCCcEEEEECCCCCCCHHHHHHHHHHccCchHHHhccccccC
Confidence 8765 5799999999999999984 4999999998877665544 33221 1111111110 0110 001112
Q ss_pred cccCCHHHHHHHHHHCCCEEEE
Q 020710 282 AYLHAEADVERALQKVGWKIRK 303 (322)
Q Consensus 282 ~~~~~~~~~~~~l~~aGf~vv~ 303 (322)
..+.+.+++.+++.++|+.+..
T Consensus 163 ~~~~~~~~~~~~l~~~g~~v~~ 184 (258)
T PRK01683 163 APLPPPHAYYDALAPAACRVDI 184 (258)
T ss_pred cCCCCHHHHHHHHHhCCCceee
Confidence 3446788999999999987644
|
|
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.7e-16 Score=137.67 Aligned_cols=142 Identities=20% Similarity=0.200 Sum_probs=108.8
Q ss_pred CeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--CCCccEEEE
Q 020710 150 IAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL--DGKYDTVVC 225 (322)
Q Consensus 150 ~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~fD~V~~ 225 (322)
++|||||||+|.++..+++. +++|+|+|+|+.+++.+++++...+...++ .+...|+... .++||+|++
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i-------~~~~~d~~~~~~~~~fD~I~~ 73 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRI-------RIFYRDSAKDPFPDTYDLVFG 73 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcce-------EEEecccccCCCCCCCCEeeh
Confidence 37999999999999999887 478999999999999999999887766544 8899988543 578999999
Q ss_pred cccccccCcchHHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCCCCCccccccCCHHHHHHHHHHCCCEEEEEe
Q 020710 226 LDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQKVGWKIRKRG 305 (322)
Q Consensus 226 ~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~vv~~~ 305 (322)
..+++|+++ ...+++.++++++++|.+.+.... ... .-.........++.+.+++.+++.++||++++..
T Consensus 74 ~~~l~~~~~--~~~~l~~~~~~LkpgG~l~i~~~~--~~~------~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~~~~ 143 (224)
T smart00828 74 FEVIHHIKD--KMDLFSNISRHLKDGGHLVLADFI--ANL------LSAIEHEETTSYLVTREEWAELLARNNLRVVEGV 143 (224)
T ss_pred HHHHHhCCC--HHHHHHHHHHHcCCCCEEEEEEcc--ccc------CccccccccccccCCHHHHHHHHHHCCCeEEEeE
Confidence 999999988 559999999988777766543211 000 0000111223456789999999999999998866
Q ss_pred eee
Q 020710 306 LIT 308 (322)
Q Consensus 306 ~~~ 308 (322)
...
T Consensus 144 ~~~ 146 (224)
T smart00828 144 DAS 146 (224)
T ss_pred ECc
Confidence 543
|
|
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.1e-16 Score=127.74 Aligned_cols=154 Identities=19% Similarity=0.251 Sum_probs=114.5
Q ss_pred HHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc-CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEccc
Q 020710 135 ENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ-GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDL 213 (322)
Q Consensus 135 ~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~ 213 (322)
+.+.+++. ++.+|||+|||.|.++.+|.+. +++..|+|++++.+..+.++ ++ .++++|+
T Consensus 5 ~~I~~~I~-----pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~r----Gv-----------~Viq~Dl 64 (193)
T PF07021_consen 5 QIIAEWIE-----PGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVAR----GV-----------SVIQGDL 64 (193)
T ss_pred HHHHHHcC-----CCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHc----CC-----------CEEECCH
Confidence 44556655 4799999999999999999885 88999999999988777554 22 7899998
Q ss_pred ccC-----CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEECCChhhHHHHHHh-hccC------C-CCCCcc
Q 020710 214 ESL-----DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRV-GELF------P-GPSKAT 280 (322)
Q Consensus 214 ~~~-----~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~-~~~~------~-~~~~~~ 280 (322)
++- +++||.|+++.+|+++..++ .+|+++.|+ ++.+|++|..-..+...+.-+ .... + ..++.+
T Consensus 65 d~gL~~f~d~sFD~VIlsqtLQ~~~~P~--~vL~EmlRV-gr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTP 141 (193)
T PF07021_consen 65 DEGLADFPDQSFDYVILSQTLQAVRRPD--EVLEEMLRV-GRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTP 141 (193)
T ss_pred HHhHhhCCCCCccEEehHhHHHhHhHHH--HHHHHHHHh-cCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCC
Confidence 663 89999999999999999866 999999886 446777775544433333322 1111 1 122334
Q ss_pred ccccCCHHHHHHHHHHCCCEEEEEeeeecce
Q 020710 281 RAYLHAEADVERALQKVGWKIRKRGLITTQF 311 (322)
Q Consensus 281 ~~~~~~~~~~~~~l~~aGf~vv~~~~~~~~~ 311 (322)
+..+.+..|++++.++.|++|++........
T Consensus 142 Nih~~Ti~DFe~lc~~~~i~I~~~~~~~~~~ 172 (193)
T PF07021_consen 142 NIHLCTIKDFEDLCRELGIRIEERVFLDGGR 172 (193)
T ss_pred CcccccHHHHHHHHHHCCCEEEEEEEEcCCC
Confidence 4446699999999999999999977665443
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.8e-16 Score=140.40 Aligned_cols=137 Identities=22% Similarity=0.284 Sum_probs=104.9
Q ss_pred CCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--CCCccEEEE
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL--DGKYDTVVC 225 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~fD~V~~ 225 (322)
++.+|||+|||+|.++.++++.|.+|+|+|+|+.|++.++++....++.. .+...|+... +++||+|++
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~~~~~~~~l~v---------~~~~~D~~~~~~~~~fD~I~~ 190 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQEIAEKENLNI---------RTGLYDINSASIQEEYDFILS 190 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCce---------EEEEechhcccccCCccEEEE
Confidence 35699999999999999999999999999999999999999987766532 7788887654 789999999
Q ss_pred cccccccCcchHHHHHHHHHhccCCeEEEE-ECCChhhHHHHHHhhccCCCCCCccccccCCHHHHHHHHHHCCCEEEEE
Q 020710 226 LDVLIHYPQSKADGMIAHLASLAEKRLILS-FAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQKVGWKIRKR 304 (322)
Q Consensus 226 ~~~l~~~~~~~~~~~l~~l~~~~~~~~il~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~vv~~ 304 (322)
..+++|++++....+++.+.+.+++||++. +..... . ..+ ......+.++++++.+++. +|+++..
T Consensus 191 ~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~-~--------~~~--~~~p~~~~~~~~el~~~~~--~~~i~~~ 257 (287)
T PRK12335 191 TVVLMFLNRERIPAIIKNMQEHTNPGGYNLIVCAMDT-E--------DYP--CPMPFSFTFKEGELKDYYQ--DWEIVKY 257 (287)
T ss_pred cchhhhCCHHHHHHHHHHHHHhcCCCcEEEEEEeccc-c--------cCC--CCCCCCcccCHHHHHHHhC--CCEEEEE
Confidence 999999987778899999999887766533 221110 0 000 0122345578999999986 4999886
Q ss_pred ee
Q 020710 305 GL 306 (322)
Q Consensus 305 ~~ 306 (322)
..
T Consensus 258 ~e 259 (287)
T PRK12335 258 NE 259 (287)
T ss_pred ec
Confidence 43
|
|
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=99.69 E-value=1e-15 Score=131.06 Aligned_cols=143 Identities=21% Similarity=0.151 Sum_probs=99.5
Q ss_pred CCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCC------C-CCCCCCceEEcccccCC---
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNG------G-EAPVMPKFEVKDLESLD--- 217 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~------~-~~~~~~~~~~~d~~~~~--- 217 (322)
++.+|||+|||.|..+..|+++|++|+|+|+|+.+++.+.+.. ++.... + .....++++++|+.+++
T Consensus 34 ~~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~ 110 (213)
T TIGR03840 34 AGARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQFFAEN---GLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAAD 110 (213)
T ss_pred CCCeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHc---CCCcceeccccceeeecCceEEEEccCCCCCccc
Confidence 4679999999999999999999999999999999999864322 111000 0 00123489999998763
Q ss_pred -CCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCCCCCccccccCCHHHHHHHHHH
Q 020710 218 -GKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQK 296 (322)
Q Consensus 218 -~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 296 (322)
+.||.|+...+++|++.+....+++.+.+++++|+.+.+..-.. . . . .. ....+..+.+++++++..
T Consensus 111 ~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~--~---~-~-~~-----~gpp~~~~~~eL~~~f~~ 178 (213)
T TIGR03840 111 LGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDY--D---Q-S-EM-----AGPPFSVSPAEVEALYGG 178 (213)
T ss_pred CCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEc--C---C-C-CC-----CCcCCCCCHHHHHHHhcC
Confidence 57999999999999998888899999999887776432211000 0 0 0 00 112245689999998863
Q ss_pred CCCEEEEEee
Q 020710 297 VGWKIRKRGL 306 (322)
Q Consensus 297 aGf~vv~~~~ 306 (322)
+|++...+.
T Consensus 179 -~~~i~~~~~ 187 (213)
T TIGR03840 179 -HYEIELLES 187 (213)
T ss_pred -CceEEEEee
Confidence 566665443
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.7e-16 Score=130.18 Aligned_cols=151 Identities=24% Similarity=0.241 Sum_probs=111.2
Q ss_pred CCCeEEEECCCcccchHHHHhc-CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCc-eEEcccccC----CCCcc
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQ-GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPK-FEVKDLESL----DGKYD 221 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~-~~~~d~~~~----~~~fD 221 (322)
....|||||||||.+-.++-.. +++|+++|+++.|-+.+.+.+.+.... ++. |+.++.+++ +++||
T Consensus 76 ~K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~--------~~~~fvva~ge~l~~l~d~s~D 147 (252)
T KOG4300|consen 76 GKGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPL--------QVERFVVADGENLPQLADGSYD 147 (252)
T ss_pred CccceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCc--------ceEEEEeechhcCcccccCCee
Confidence 3567899999999997776543 899999999999999999998876322 224 899998886 79999
Q ss_pred EEEEcccccccCcchHHHHHHHHHhccCCeEEEEEC-CChhhHHHHHHhhccCCCC--CCccccccCCHHHHHHHHHHCC
Q 020710 222 TVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFA-PKTFYYDLLKRVGELFPGP--SKATRAYLHAEADVERALQKVG 298 (322)
Q Consensus 222 ~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~aG 298 (322)
+|+|..+||...++. +.|+++++++++||.+.+. +..--+.+++++.+....+ .-...++.+++ +..+.|+++-
T Consensus 148 tVV~TlvLCSve~~~--k~L~e~~rlLRpgG~iifiEHva~~y~~~n~i~q~v~ep~~~~~~dGC~ltr-d~~e~Leda~ 224 (252)
T KOG4300|consen 148 TVVCTLVLCSVEDPV--KQLNEVRRLLRPGGRIIFIEHVAGEYGFWNRILQQVAEPLWHLESDGCVLTR-DTGELLEDAE 224 (252)
T ss_pred eEEEEEEEeccCCHH--HHHHHHHHhcCCCcEEEEEecccccchHHHHHHHHHhchhhheeccceEEeh-hHHHHhhhcc
Confidence 999999999999966 9999999998777766554 3322233333332222111 23345555666 7778999999
Q ss_pred CEEEEEeeeec
Q 020710 299 WKIRKRGLITT 309 (322)
Q Consensus 299 f~vv~~~~~~~ 309 (322)
|+..+......
T Consensus 225 f~~~~~kr~~~ 235 (252)
T KOG4300|consen 225 FSIDSCKRFNF 235 (252)
T ss_pred cccchhhcccC
Confidence 99888665543
|
|
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.4e-15 Score=129.08 Aligned_cols=143 Identities=18% Similarity=0.225 Sum_probs=99.1
Q ss_pred CCCeEEEECCCcccchHHHHhc-CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEccccc----C-CCCcc
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQ-GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLES----L-DGKYD 221 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~----~-~~~fD 221 (322)
++.+|||||||+|.++..+++. +.+++|+|+|++|++.++++ + ++++++|+.+ . +++||
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~----~-----------~~~~~~d~~~~l~~~~~~sfD 77 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR----G-----------VNVIQGDLDEGLEAFPDKSFD 77 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc----C-----------CeEEEEEhhhcccccCCCCcC
Confidence 3679999999999999998765 67899999999999988642 1 1677788754 2 57899
Q ss_pred EEEEcccccccCcchHHHHHHHHHhccCCeEEEEECCChhhHHHHH-HhhccCC-------CCCCccccccCCHHHHHHH
Q 020710 222 TVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLK-RVGELFP-------GPSKATRAYLHAEADVERA 293 (322)
Q Consensus 222 ~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~-~~~~~~~-------~~~~~~~~~~~~~~~~~~~ 293 (322)
+|+|+.+++|++++ ..+++++.+.++. +++.+........... .....++ ......+..+++.+++.++
T Consensus 78 ~Vi~~~~l~~~~d~--~~~l~e~~r~~~~-~ii~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l 154 (194)
T TIGR02081 78 YVILSQTLQATRNP--EEILDEMLRVGRH-AIVSFPNFGYWRVRWSILTKGRMPVTGELPYDWYNTPNIHFCTIADFEDL 154 (194)
T ss_pred EEEEhhHhHcCcCH--HHHHHHHHHhCCe-EEEEcCChhHHHHHHHHHhCCccccCCCCCccccCCCCcccCcHHHHHHH
Confidence 99999999999984 4899999887654 4444422111111111 0111111 0011223346789999999
Q ss_pred HHHCCCEEEEEeeee
Q 020710 294 LQKVGWKIRKRGLIT 308 (322)
Q Consensus 294 l~~aGf~vv~~~~~~ 308 (322)
++++||++++.....
T Consensus 155 l~~~Gf~v~~~~~~~ 169 (194)
T TIGR02081 155 CGELNLRILDRAAFD 169 (194)
T ss_pred HHHCCCEEEEEEEec
Confidence 999999999876653
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.9e-16 Score=116.79 Aligned_cols=91 Identities=35% Similarity=0.524 Sum_probs=78.0
Q ss_pred EEECCCcccchHHHHhc-CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC---CCCccEEEEccc
Q 020710 153 CDAGCGTGSLAIPLAKQ-GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL---DGKYDTVVCLDV 228 (322)
Q Consensus 153 LDvGcG~G~~~~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~fD~V~~~~~ 228 (322)
||+|||+|..+..+++. +.+|+++|+|+.|++.++++...... .++.+|+.++ +++||+|++..+
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~~~-----------~~~~~d~~~l~~~~~sfD~v~~~~~ 69 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNEGV-----------SFRQGDAEDLPFPDNSFDVVFSNSV 69 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTSTE-----------EEEESBTTSSSS-TT-EEEEEEESH
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccccCc-----------hheeehHHhCccccccccccccccc
Confidence 89999999999999999 88999999999999999998865432 5889998877 799999999999
Q ss_pred ccccCcchHHHHHHHHHhccCCeEEEEE
Q 020710 229 LIHYPQSKADGMIAHLASLAEKRLILSF 256 (322)
Q Consensus 229 l~~~~~~~~~~~l~~l~~~~~~~~il~~ 256 (322)
++|+++ ...+++++.++++++|.+.+
T Consensus 70 ~~~~~~--~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 70 LHHLED--PEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp GGGSSH--HHHHHHHHHHHEEEEEEEEE
T ss_pred eeeccC--HHHHHHHHHHHcCcCeEEeC
Confidence 999965 66999999999988887754
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.5e-16 Score=119.20 Aligned_cols=92 Identities=33% Similarity=0.497 Sum_probs=78.0
Q ss_pred EEEECCCcccchHHHHhcC-----CEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC---CCCccEE
Q 020710 152 VCDAGCGTGSLAIPLAKQG-----AIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL---DGKYDTV 223 (322)
Q Consensus 152 VLDvGcG~G~~~~~la~~~-----~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~fD~V 223 (322)
|||+|||+|..+..+.+.. .+++|+|+|++|++.++++....+.. ++|++.|+.++ +++||+|
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~---------~~~~~~D~~~l~~~~~~~D~v 71 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPK---------VRFVQADARDLPFSDGKFDLV 71 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTT---------SEEEESCTTCHHHHSSSEEEE
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCc---------eEEEECCHhHCcccCCCeeEE
Confidence 7999999999999999873 78999999999999999999876553 39999999886 7899999
Q ss_pred EEcc-cccccCcchHHHHHHHHHhccCCeE
Q 020710 224 VCLD-VLIHYPQSKADGMIAHLASLAEKRL 252 (322)
Q Consensus 224 ~~~~-~l~~~~~~~~~~~l~~l~~~~~~~~ 252 (322)
+|.. +++|++++++..+++++.++++++|
T Consensus 72 ~~~~~~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 72 VCSGLSLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp EE-TTGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred EEcCCccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 9954 5999999889999999999887765
|
|
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.5e-15 Score=129.51 Aligned_cols=148 Identities=26% Similarity=0.384 Sum_probs=106.3
Q ss_pred CCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC----CCCccE
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL----DGKYDT 222 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~~fD~ 222 (322)
.++.+|||||||+|.++..+++.+++++++|+++.+++.+++++...+... .+...|+.+. .++||+
T Consensus 47 ~~~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~fD~ 117 (233)
T PRK05134 47 LFGKRVLDVGCGGGILSESMARLGADVTGIDASEENIEVARLHALESGLKI---------DYRQTTAEELAAEHPGQFDV 117 (233)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHHHHHHHHHHHHHcCCce---------EEEecCHHHhhhhcCCCccE
Confidence 357899999999999999999989999999999999999998876554322 6777776553 478999
Q ss_pred EEEcccccccCcchHHHHHHHHHhccCCeEEEEECC--ChhhHHHH-----HHhhccCCCCCCccccccCCHHHHHHHHH
Q 020710 223 VVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAP--KTFYYDLL-----KRVGELFPGPSKATRAYLHAEADVERALQ 295 (322)
Q Consensus 223 V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~--~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 295 (322)
|++..+++|+++. ..+++.+.+++.+++.+.+.. ........ ..+....+. .......+.+.+++.++++
T Consensus 118 Ii~~~~l~~~~~~--~~~l~~~~~~L~~gG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~ 194 (233)
T PRK05134 118 VTCMEMLEHVPDP--ASFVRACAKLVKPGGLVFFSTLNRNLKSYLLAIVGAEYVLRMLPK-GTHDYKKFIKPSELAAWLR 194 (233)
T ss_pred EEEhhHhhccCCH--HHHHHHHHHHcCCCcEEEEEecCCChHHHHHHHhhHHHHhhhcCc-ccCchhhcCCHHHHHHHHH
Confidence 9999999999984 489999999876666544421 11110000 011111111 1122334668999999999
Q ss_pred HCCCEEEEEee
Q 020710 296 KVGWKIRKRGL 306 (322)
Q Consensus 296 ~aGf~vv~~~~ 306 (322)
++||++++...
T Consensus 195 ~~Gf~~v~~~~ 205 (233)
T PRK05134 195 QAGLEVQDITG 205 (233)
T ss_pred HCCCeEeeeee
Confidence 99999998653
|
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.8e-15 Score=140.73 Aligned_cols=144 Identities=17% Similarity=0.191 Sum_probs=105.4
Q ss_pred CCCCCeEEEECCCcccchHHHHhc-CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccCCCCccEEE
Q 020710 146 SLKGIAVCDAGCGTGSLAIPLAKQ-GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESLDGKYDTVV 224 (322)
Q Consensus 146 ~~~~~~VLDvGcG~G~~~~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~fD~V~ 224 (322)
..++.+|||||||+|.++..+++. +++|+|+|+|++|++.++++.... . +++...|..+++++||.|+
T Consensus 165 l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~l--~---------v~~~~~D~~~l~~~fD~Iv 233 (383)
T PRK11705 165 LKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAGL--P---------VEIRLQDYRDLNGQFDRIV 233 (383)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccC--e---------EEEEECchhhcCCCCCEEE
Confidence 346789999999999999999986 889999999999999999887432 1 2788889887788999999
Q ss_pred EcccccccCcchHHHHHHHHHhccCCeEEEEECC---ChhhHHHHHHhhccCCCCCCccccccCCHHHHHHHHHHCCCEE
Q 020710 225 CLDVLIHYPQSKADGMIAHLASLAEKRLILSFAP---KTFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQKVGWKI 301 (322)
Q Consensus 225 ~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v 301 (322)
+..+++|+++.....+++++.+++++||++.+.. ..... ....|-...-.+..++.+.+++.+.++ .||.+
T Consensus 234 s~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~~~~~~-----~~~~~i~~yifp~g~lps~~~i~~~~~-~~~~v 307 (383)
T PRK11705 234 SVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGSNKTDT-----NVDPWINKYIFPNGCLPSVRQIAQASE-GLFVM 307 (383)
T ss_pred EeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEccCCCCCC-----CCCCCceeeecCCCcCCCHHHHHHHHH-CCcEE
Confidence 9999999987667899999999887777665421 11100 000111001112234567888888765 58998
Q ss_pred EEEee
Q 020710 302 RKRGL 306 (322)
Q Consensus 302 v~~~~ 306 (322)
.+.+.
T Consensus 308 ~d~~~ 312 (383)
T PRK11705 308 EDWHN 312 (383)
T ss_pred EEEec
Confidence 87643
|
|
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.8e-15 Score=128.07 Aligned_cols=141 Identities=20% Similarity=0.146 Sum_probs=99.5
Q ss_pred CCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCC-------CCCCCCCceEEcccccC----
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNG-------GEAPVMPKFEVKDLESL---- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~-------~~~~~~~~~~~~d~~~~---- 216 (322)
++.+|||+|||.|..+..|+++|++|+|||+|+.+++.+.+. .++.... ......+++.++|+.++
T Consensus 37 ~~~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~~~~---~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~ 113 (218)
T PRK13255 37 AGSRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQFFAE---NGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAAD 113 (218)
T ss_pred CCCeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHHHHH---cCCCccccccccccccccCceEEEECcccCCCccc
Confidence 467999999999999999999999999999999999986432 1111000 00112348899999876
Q ss_pred CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEE--EEECCChhhHHHHHHhhccCCCCCCccccccCCHHHHHHHH
Q 020710 217 DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLI--LSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADVERAL 294 (322)
Q Consensus 217 ~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~i--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 294 (322)
.+.||+|+-..+++|++.+....+++.+.+++++||. +...... .....+ ..+..+.+++++++
T Consensus 114 ~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~---------~~~~~g-----Pp~~~~~~el~~~~ 179 (218)
T PRK13255 114 LADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDYP---------QEELAG-----PPFSVSDEEVEALY 179 (218)
T ss_pred CCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEeC---------CccCCC-----CCCCCCHHHHHHHh
Confidence 2689999999999999988888999999998877643 3211100 000111 12457899999999
Q ss_pred HHCCCEEEEEee
Q 020710 295 QKVGWKIRKRGL 306 (322)
Q Consensus 295 ~~aGf~vv~~~~ 306 (322)
.. +|++.....
T Consensus 180 ~~-~~~i~~~~~ 190 (218)
T PRK13255 180 AG-CFEIELLER 190 (218)
T ss_pred cC-CceEEEeee
Confidence 53 377766443
|
|
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.1e-15 Score=130.18 Aligned_cols=95 Identities=17% Similarity=0.173 Sum_probs=80.0
Q ss_pred CCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--CCCccEE
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL--DGKYDTV 223 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~fD~V 223 (322)
++.+|||||||+|.++..+++. +.+++|+|+|+.|++.|+++... +.+.++|+.+. +++||+|
T Consensus 43 ~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~~-------------~~~~~~d~~~~~~~~sfD~V 109 (204)
T TIGR03587 43 KIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLPN-------------INIIQGSLFDPFKDNFFDLV 109 (204)
T ss_pred CCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCCC-------------CcEEEeeccCCCCCCCEEEE
Confidence 5678999999999999999886 68999999999999999876532 17788887654 6799999
Q ss_pred EEcccccccCcchHHHHHHHHHhccCCeEEEE
Q 020710 224 VCLDVLIHYPQSKADGMIAHLASLAEKRLILS 255 (322)
Q Consensus 224 ~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~ 255 (322)
++..+++|++++.+..+++++.++.++.+++.
T Consensus 110 ~~~~vL~hl~p~~~~~~l~el~r~~~~~v~i~ 141 (204)
T TIGR03587 110 LTKGVLIHINPDNLPTAYRELYRCSNRYILIA 141 (204)
T ss_pred EECChhhhCCHHHHHHHHHHHHhhcCcEEEEE
Confidence 99999999987778899999999876655543
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.5e-16 Score=134.97 Aligned_cols=163 Identities=25% Similarity=0.322 Sum_probs=116.0
Q ss_pred HHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcC--CEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEc
Q 020710 134 VENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQG--AIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVK 211 (322)
Q Consensus 134 ~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (322)
...+++.+.......+.+|||+|||+|.++..+++.+ .+++++|+|+.+++.++++... + +.++.+
T Consensus 20 ~~~l~~~~~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~-----~-------~~~~~~ 87 (240)
T TIGR02072 20 AKRLLALLKEKGIFIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSE-----N-------VQFICG 87 (240)
T ss_pred HHHHHHHhhhhccCCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCC-----C-------CeEEec
Confidence 3555566654322345789999999999999999874 4689999999999999877642 1 278888
Q ss_pred ccccC---CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEECC-Chh-hHHHHHHhhccCCCCCCccccccCC
Q 020710 212 DLESL---DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAP-KTF-YYDLLKRVGELFPGPSKATRAYLHA 286 (322)
Q Consensus 212 d~~~~---~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (322)
|+.+. +++||+|++..+++|..+ ...+++++.++++++|.+.+.. ... ...+...... ....+.+
T Consensus 88 d~~~~~~~~~~fD~vi~~~~l~~~~~--~~~~l~~~~~~L~~~G~l~~~~~~~~~~~~~~~~~~~--------~~~~~~~ 157 (240)
T TIGR02072 88 DAEKLPLEDSSFDLIVSNLALQWCDD--LSQALSELARVLKPGGLLAFSTFGPGTLHELRQSFGQ--------HGLRYLS 157 (240)
T ss_pred chhhCCCCCCceeEEEEhhhhhhccC--HHHHHHHHHHHcCCCcEEEEEeCCccCHHHHHHHHHH--------hccCCCC
Confidence 88765 578999999999999988 4589999999887777665432 111 1111111111 1123457
Q ss_pred HHHHHHHHHHCCCEEEEEeeeecceehhhhhhh
Q 020710 287 EADVERALQKVGWKIRKRGLITTQFYFARLVEA 319 (322)
Q Consensus 287 ~~~~~~~l~~aGf~vv~~~~~~~~~~f~~~~~~ 319 (322)
.+++.+++.++ |+.+........++|.+..+.
T Consensus 158 ~~~~~~~l~~~-f~~~~~~~~~~~~~~~~~~~~ 189 (240)
T TIGR02072 158 LDELKALLKNS-FELLTLEEELITLSFDDPLDV 189 (240)
T ss_pred HHHHHHHHHHh-cCCcEEEEEEEEEeCCCHHHH
Confidence 88999999998 988877777777777665543
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.64 E-value=6.9e-15 Score=121.33 Aligned_cols=131 Identities=19% Similarity=0.199 Sum_probs=94.4
Q ss_pred CCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--CCCccEEEE
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL--DGKYDTVVC 225 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~fD~V~~ 225 (322)
.-.++||+|||.|.++..|+.++.+++++|+|+.+++.|+++..... ++.|++.|+.+. +++||+|++
T Consensus 43 ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~~~~----------~V~~~~~dvp~~~P~~~FDLIV~ 112 (201)
T PF05401_consen 43 RYRRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLAGLP----------HVEWIQADVPEFWPEGRFDLIVL 112 (201)
T ss_dssp SEEEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTTT-S----------SEEEEES-TTT---SS-EEEEEE
T ss_pred ccceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcCCCC----------CeEEEECcCCCCCCCCCeeEEEE
Confidence 45789999999999999999998889999999999999999987542 238999999876 799999999
Q ss_pred cccccccCc-chHHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCCCCCccccccCCHHHHHHHHHHCCCEEEE
Q 020710 226 LDVLIHYPQ-SKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQKVGWKIRK 303 (322)
Q Consensus 226 ~~~l~~~~~-~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~vv~ 303 (322)
+++++++.+ +++..+++.+...+.++|.+++.+.. .. ....|.. ....+.+.++|.+. |..++
T Consensus 113 SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~r--d~----~c~~wgh--------~~ga~tv~~~~~~~-~~~~~ 176 (201)
T PF05401_consen 113 SEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHAR--DA----NCRRWGH--------AAGAETVLEMLQEH-LTEVE 176 (201)
T ss_dssp ES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE---HH----HHHHTT---------S--HHHHHHHHHHH-SEEEE
T ss_pred ehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEec--CC----cccccCc--------ccchHHHHHHHHHH-hhhee
Confidence 999999986 56788999999888777766664321 11 1222321 12578898999887 54444
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.8e-15 Score=131.86 Aligned_cols=145 Identities=20% Similarity=0.252 Sum_probs=105.4
Q ss_pred CCCCeEEEECCCcccchHHHHhc-C--CEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC---CCCc
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQ-G--AIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL---DGKY 220 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~-~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~f 220 (322)
.++.+|||+|||+|..+..+++. + .+|+++|+|+.|++.|+++....+..+ +.|+.+|++++ +++|
T Consensus 76 ~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~--------v~~~~~d~~~l~~~~~~f 147 (272)
T PRK11873 76 KPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTN--------VEFRLGEIEALPVADNSV 147 (272)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCC--------EEEEEcchhhCCCCCCce
Confidence 46889999999999988877765 3 479999999999999999887665432 38889998775 5689
Q ss_pred cEEEEcccccccCcchHHHHHHHHHhccCCeEEEEEC----CChhhHHHHHHhhccCCCCCCccccccCCHHHHHHHHHH
Q 020710 221 DTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFA----PKTFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQK 296 (322)
Q Consensus 221 D~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 296 (322)
|+|++..+++|.++ ...+++++.+++++||.+.+. ............ ..+.. .....++.+++.++|++
T Consensus 148 D~Vi~~~v~~~~~d--~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~-~~~~~----~~~~~~~~~e~~~~l~~ 220 (272)
T PRK11873 148 DVIISNCVINLSPD--KERVFKEAFRVLKPGGRFAISDVVLRGELPEEIRNDA-ELYAG----CVAGALQEEEYLAMLAE 220 (272)
T ss_pred eEEEEcCcccCCCC--HHHHHHHHHHHcCCCcEEEEEEeeccCCCCHHHHHhH-HHHhc----cccCCCCHHHHHHHHHH
Confidence 99999999999888 458999999998877766542 111111111111 12211 01123478899999999
Q ss_pred CCCEEEEEee
Q 020710 297 VGWKIRKRGL 306 (322)
Q Consensus 297 aGf~vv~~~~ 306 (322)
+||..++...
T Consensus 221 aGf~~v~i~~ 230 (272)
T PRK11873 221 AGFVDITIQP 230 (272)
T ss_pred CCCCceEEEe
Confidence 9999887543
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.64 E-value=4e-15 Score=128.62 Aligned_cols=159 Identities=26% Similarity=0.351 Sum_probs=108.2
Q ss_pred HHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcC---CEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEc
Q 020710 135 ENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQG---AIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVK 211 (322)
Q Consensus 135 ~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~---~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (322)
..+++.+... ++.+|||+|||+|.++..+++.. .+++++|+++.+++.++++.. ...+ +.+..+
T Consensus 29 ~~~~~~~~~~---~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~---~~~~-------i~~~~~ 95 (223)
T TIGR01934 29 RRAVKLIGVF---KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE---LPLN-------IEFIQA 95 (223)
T ss_pred HHHHHHhccC---CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc---cCCC-------ceEEec
Confidence 3444554433 57899999999999999998873 489999999999999988875 1122 288888
Q ss_pred ccccC---CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEEC----CChh-hHH--------HHHHhhccCCC
Q 020710 212 DLESL---DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFA----PKTF-YYD--------LLKRVGELFPG 275 (322)
Q Consensus 212 d~~~~---~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~----~~~~-~~~--------~~~~~~~~~~~ 275 (322)
|+.+. +++||+|++..+++|+++ ...+++.+.+++++||.+.+. +... ... ....+...+..
T Consensus 96 d~~~~~~~~~~~D~i~~~~~~~~~~~--~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (223)
T TIGR01934 96 DAEALPFEDNSFDAVTIAFGLRNVTD--IQKALREMYRVLKPGGRLVILEFSKPANALLKKFYKFYLKNVLPSIGGLISK 173 (223)
T ss_pred chhcCCCCCCcEEEEEEeeeeCCccc--HHHHHHHHHHHcCCCcEEEEEEecCCCchhhHHHHHHHHHHhhhhhhhhhcC
Confidence 88765 468999999999999988 559999999987766655431 1110 000 00111111111
Q ss_pred CCCcc------ccccCCHHHHHHHHHHCCCEEEEEeeee
Q 020710 276 PSKAT------RAYLHAEADVERALQKVGWKIRKRGLIT 308 (322)
Q Consensus 276 ~~~~~------~~~~~~~~~~~~~l~~aGf~vv~~~~~~ 308 (322)
..... ...+.+.++++++|.++||++++.+...
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~ 212 (223)
T TIGR01934 174 NAEAYTYLPESIRAFPSQEELAAMLKEAGFEEVRYRSLT 212 (223)
T ss_pred CchhhHHHHHHHHhCCCHHHHHHHHHHcCCccceeeeee
Confidence 11000 0124578999999999999988765543
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.9e-15 Score=125.24 Aligned_cols=193 Identities=21% Similarity=0.268 Sum_probs=134.5
Q ss_pred HhchhhHHHHHHHhcCCCcccchhhhhhcCchhHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc----CCEEEE
Q 020710 100 YFNNSGFQRWKKIYGETDDVNRVQLDIRLGHSKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ----GAIVSA 175 (322)
Q Consensus 100 ~f~~~~~~~w~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~----~~~v~g 175 (322)
.|...+-..|..+|..... ....+..| +..+.-+++.... ....+|||||||.|....++.+. +..|.+
T Consensus 30 ~y~~~~~k~wD~fy~~~~~--rFfkdR~w----L~~Efpel~~~~~-~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~a 102 (264)
T KOG2361|consen 30 KYEREASKYWDTFYKIHEN--RFFKDRNW----LLREFPELLPVDE-KSAETILEVGCGVGNTVFPLLKTSPNNRLKVYA 102 (264)
T ss_pred hhhcchhhhhhhhhhhccc--cccchhHH----HHHhhHHhhCccc-cChhhheeeccCCCcccchhhhcCCCCCeEEEE
Confidence 5666666778888865432 22223222 3344444444331 12338999999999999999876 468999
Q ss_pred EeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-------CCCccEEEEcccccccCcchHHHHHHHHHhcc
Q 020710 176 SDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------DGKYDTVVCLDVLIHYPQSKADGMIAHLASLA 248 (322)
Q Consensus 176 vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~ 248 (322)
+|.||.+++..+++...... + +.-.+.|+... .+++|.|++..+|.-++++.....++.+++++
T Consensus 103 cDfsp~Ai~~vk~~~~~~e~--~-------~~afv~Dlt~~~~~~~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~ll 173 (264)
T KOG2361|consen 103 CDFSPRAIELVKKSSGYDES--R-------VEAFVWDLTSPSLKEPPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLL 173 (264)
T ss_pred cCCChHHHHHHHhccccchh--h-------hcccceeccchhccCCCCcCccceEEEEEEEeccChHHHHHHHHHHHHHh
Confidence 99999999998877654321 1 14455565442 68999999999999999988999999999999
Q ss_pred CCeEEEEECCChhh---HHH---HHHhhccCCCCCCccccccCCHHHHHHHHHHCCCEEEEEeeee
Q 020710 249 EKRLILSFAPKTFY---YDL---LKRVGELFPGPSKATRAYLHAEADVERALQKVGWKIRKRGLIT 308 (322)
Q Consensus 249 ~~~~il~~~~~~~~---~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~vv~~~~~~ 308 (322)
++||.+.+-.-..+ .-. .+.+.+.++--.+++..|+++.+++.+++.++||..++.+...
T Consensus 174 KPGG~llfrDYg~~DlaqlRF~~~~~i~~nfYVRgDGT~~YfF~~eeL~~~f~~agf~~~~~~~~~ 239 (264)
T KOG2361|consen 174 KPGGSLLFRDYGRYDLAQLRFKKGQCISENFYVRGDGTRAYFFTEEELDELFTKAGFEEVQLEVDC 239 (264)
T ss_pred CCCcEEEEeecccchHHHHhccCCceeecceEEccCCceeeeccHHHHHHHHHhcccchhccccee
Confidence 88887776432211 111 1233444455567888899999999999999999988755543
|
|
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.2e-14 Score=123.34 Aligned_cols=148 Identities=27% Similarity=0.410 Sum_probs=105.7
Q ss_pred CCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC----CCCccEE
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL----DGKYDTV 223 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~~fD~V 223 (322)
.+.+|||+|||+|.++..+++.+.+++++|+|+.+++.+++++...+.. ++.+...|+.+. +++||+|
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~--------~~~~~~~d~~~~~~~~~~~~D~i 116 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGANVTGIDASEENIEVAKLHAKKDPLL--------KIEYRCTSVEDLAEKGAKSFDVV 116 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcCCC--------ceEEEeCCHHHhhcCCCCCccEE
Confidence 4779999999999999999988889999999999999999988765431 127888887654 3789999
Q ss_pred EEcccccccCcchHHHHHHHHHhccCCeEEEEECC--ChhhHHHHHH-----hhccCCCCCCccccccCCHHHHHHHHHH
Q 020710 224 VCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAP--KTFYYDLLKR-----VGELFPGPSKATRAYLHAEADVERALQK 296 (322)
Q Consensus 224 ~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~--~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 296 (322)
++..+++|..++ ..+++.+.+++++++.+.+.. ......+... .....+ ........+.+.+++.+++++
T Consensus 117 ~~~~~l~~~~~~--~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~ 193 (224)
T TIGR01983 117 TCMEVLEHVPDP--QAFIRACAQLLKPGGILFFSTINRTPKSYLLAIVGAEYILRIVP-KGTHDWEKFIKPSELTSWLES 193 (224)
T ss_pred EehhHHHhCCCH--HHHHHHHHHhcCCCcEEEEEecCCCchHHHHHHHhhhhhhhcCC-CCcCChhhcCCHHHHHHHHHH
Confidence 999999999884 489999999876666544322 1111111110 111111 111122235688999999999
Q ss_pred CCCEEEEEee
Q 020710 297 VGWKIRKRGL 306 (322)
Q Consensus 297 aGf~vv~~~~ 306 (322)
+||++++...
T Consensus 194 ~G~~i~~~~~ 203 (224)
T TIGR01983 194 AGLRVKDVKG 203 (224)
T ss_pred cCCeeeeeee
Confidence 9999998653
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.61 E-value=8.7e-15 Score=117.83 Aligned_cols=187 Identities=17% Similarity=0.215 Sum_probs=124.5
Q ss_pred HHHHHhchhhHHHHHHHhcCCCcccchhhhhhcCchhHHHHHHHHhhhcCCC-CCCeEEEECCCcccchHHHHhcCCE--
Q 020710 96 VVREYFNNSGFQRWKKIYGETDDVNRVQLDIRLGHSKTVENTMQMLNDEGSL-KGIAVCDAGCGTGSLAIPLAKQGAI-- 172 (322)
Q Consensus 96 ~v~~~f~~~~~~~w~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~VLDvGcG~G~~~~~la~~~~~-- 172 (322)
-.++||+.. |++=-..|....+..+....- ...++.++.+.+.+...... ...+|||+|||+|.++..|++.|.+
T Consensus 16 GtK~yWD~~-Y~~El~Nfr~hgd~GEvWFg~-~ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~ 93 (227)
T KOG1271|consen 16 GTKSYWDAA-YELELTNFREHGDEGEVWFGE-DAEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSK 93 (227)
T ss_pred chHHHHHHH-HHHHHhhcccCCCccceecCC-cHHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCC
Confidence 345788876 444445555555544443331 11223344444444311112 2349999999999999999999763
Q ss_pred EEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC---CCCccEEEEcccccccC------cchHHHHHHH
Q 020710 173 VSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL---DGKYDTVVCLDVLIHYP------QSKADGMIAH 243 (322)
Q Consensus 173 v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~fD~V~~~~~l~~~~------~~~~~~~l~~ 243 (322)
++|||.|+.+++.|+..++..+..+.+ +|.+.|+.+. .++||+|.--..+.-+. ...+.-.+..
T Consensus 94 L~GvDYs~~AV~LA~niAe~~~~~n~I-------~f~q~DI~~~~~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~ 166 (227)
T KOG1271|consen 94 LTGVDYSEKAVELAQNIAERDGFSNEI-------RFQQLDITDPDFLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDS 166 (227)
T ss_pred ccccccCHHHHHHHHHHHHhcCCCcce-------eEEEeeccCCcccccceeEEeecCceeeeecCCCCcccceeeehhh
Confidence 899999999999999999888887655 9999999875 68888888665553332 1112345666
Q ss_pred HHhccCCeEEEEECCChhhHHHHHHhhccCCCCCCccccccCCHHHHHHHHHHCCCEEEEEeeeecceehhhh
Q 020710 244 LASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQKVGWKIRKRGLITTQFYFARL 316 (322)
Q Consensus 244 l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~vv~~~~~~~~~~f~~~ 316 (322)
+.+++.+++|+.+...+ ++.+|+.+.+...||++...-... .|.|...
T Consensus 167 v~~ll~~~gifvItSCN------------------------~T~dELv~~f~~~~f~~~~tvp~p-tF~FgG~ 214 (227)
T KOG1271|consen 167 VEKLLSPGGIFVITSCN------------------------FTKDELVEEFENFNFEYLSTVPTP-TFMFGGS 214 (227)
T ss_pred HhhccCCCcEEEEEecC------------------------ccHHHHHHHHhcCCeEEEEeeccc-eEEeccc
Confidence 77766666666543322 467899999999999987755443 7777643
|
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=2e-14 Score=125.42 Aligned_cols=156 Identities=23% Similarity=0.231 Sum_probs=106.7
Q ss_pred HHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc---CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEc
Q 020710 135 ENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ---GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVK 211 (322)
Q Consensus 135 ~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (322)
+.+++.+.. .++.+|||+|||+|.++..+++. +.+++|+|+|+.+++.++++...... ++.+...
T Consensus 9 ~~~~~~~~~---~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~---------~~~~~~~ 76 (241)
T PRK08317 9 ARTFELLAV---QPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGP---------NVEFVRG 76 (241)
T ss_pred HHHHHHcCC---CCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCC---------ceEEEec
Confidence 344444443 36789999999999999999886 36899999999999999887332221 1378888
Q ss_pred ccccC---CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEECCCh--------hhHHHHHHhhccCCCCCCcc
Q 020710 212 DLESL---DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKT--------FYYDLLKRVGELFPGPSKAT 280 (322)
Q Consensus 212 d~~~~---~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~--------~~~~~~~~~~~~~~~~~~~~ 280 (322)
|+... +++||+|++..+++|+++. ..+++++.++++++|.+.+.... ........+...+....
T Consensus 77 d~~~~~~~~~~~D~v~~~~~~~~~~~~--~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 151 (241)
T PRK08317 77 DADGLPFPDGSFDAVRSDRVLQHLEDP--ARALAEIARVLRPGGRVVVLDTDWDTLVWHSGDRALMRKILNFWSDHF--- 151 (241)
T ss_pred ccccCCCCCCCceEEEEechhhccCCH--HHHHHHHHHHhcCCcEEEEEecCCCceeecCCChHHHHHHHHHHHhcC---
Confidence 87664 5789999999999999984 48999999988776655432111 01111222222221100
Q ss_pred ccccCCHHHHHHHHHHCCCEEEEEeeee
Q 020710 281 RAYLHAEADVERALQKVGWKIRKRGLIT 308 (322)
Q Consensus 281 ~~~~~~~~~~~~~l~~aGf~vv~~~~~~ 308 (322)
...+...++.++++++||++++.+...
T Consensus 152 -~~~~~~~~~~~~l~~aGf~~~~~~~~~ 178 (241)
T PRK08317 152 -ADPWLGRRLPGLFREAGLTDIEVEPYT 178 (241)
T ss_pred -CCCcHHHHHHHHHHHcCCCceeEEEEE
Confidence 112345689999999999987765543
|
|
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.5e-14 Score=131.33 Aligned_cols=148 Identities=16% Similarity=0.092 Sum_probs=105.1
Q ss_pred CCCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-CCCccEE
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-DGKYDTV 223 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~fD~V 223 (322)
.+..+|||||||+|.++..++++ +.+++++|+ +.+++.+++++.+.+..+++ +++.+|+.+. ...+|+|
T Consensus 148 ~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv-------~~~~~d~~~~~~~~~D~v 219 (306)
T TIGR02716 148 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRM-------RGIAVDIYKESYPEADAV 219 (306)
T ss_pred CCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceE-------EEEecCccCCCCCCCCEE
Confidence 35689999999999999999988 578999997 78999999999888776655 8999998753 3458999
Q ss_pred EEcccccccCcchHHHHHHHHHhccCCeEEE-EEC-----CChhhHHHHHHhhccCCCCCCccccccCCHHHHHHHHHHC
Q 020710 224 VCLDVLIHYPQSKADGMIAHLASLAEKRLIL-SFA-----PKTFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQKV 297 (322)
Q Consensus 224 ~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il-~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a 297 (322)
++..++|+++++....+++++++.+++|+.+ +.. +.......+.......... .....+...+++.++|+++
T Consensus 220 ~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~e~~~ll~~a 297 (306)
T TIGR02716 220 LFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLSHYILGAGMP--FSVLGFKEQARYKEILESL 297 (306)
T ss_pred EeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCchhhHHHHHHHHcccc--cccccCCCHHHHHHHHHHc
Confidence 9999999998876778999999987655543 321 1111111111110000000 0011133579999999999
Q ss_pred CCEEEEE
Q 020710 298 GWKIRKR 304 (322)
Q Consensus 298 Gf~vv~~ 304 (322)
||+.++.
T Consensus 298 Gf~~v~~ 304 (306)
T TIGR02716 298 GYKDVTM 304 (306)
T ss_pred CCCeeEe
Confidence 9998764
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.5e-15 Score=129.56 Aligned_cols=154 Identities=23% Similarity=0.247 Sum_probs=101.2
Q ss_pred HHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCCE-EEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEE-c
Q 020710 134 VENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAI-VSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEV-K 211 (322)
Q Consensus 134 ~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~-v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~-~ 211 (322)
.+++...+.. ..+++|||||||.|+++..++..|++ |+|+|.++......+-...-.+.... .+.. .
T Consensus 104 W~rl~p~l~~---L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~--------~~~lpl 172 (315)
T PF08003_consen 104 WDRLLPHLPD---LKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPP--------VFELPL 172 (315)
T ss_pred HHHHHhhhCC---cCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCcc--------EEEcCc
Confidence 3777777753 36899999999999999999999885 99999998765543221111111110 2222 2
Q ss_pred ccccC--CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEEC----CChhhHHHHHHhhccCCC--CCCccccc
Q 020710 212 DLESL--DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFA----PKTFYYDLLKRVGELFPG--PSKATRAY 283 (322)
Q Consensus 212 d~~~~--~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~----~~~~~~~~~~~~~~~~~~--~~~~~~~~ 283 (322)
.++++ .+.||+|+|..||.|..+|. ..|++++..+.+||-+++. +...- .-+++. ..+..+.|
T Consensus 173 gvE~Lp~~~~FDtVF~MGVLYHrr~Pl--~~L~~Lk~~L~~gGeLvLETlvi~g~~~-------~~L~P~~rYa~m~nv~ 243 (315)
T PF08003_consen 173 GVEDLPNLGAFDTVFSMGVLYHRRSPL--DHLKQLKDSLRPGGELVLETLVIDGDEN-------TVLVPEDRYAKMRNVW 243 (315)
T ss_pred chhhccccCCcCEEEEeeehhccCCHH--HHHHHHHHhhCCCCEEEEEEeeecCCCc-------eEEccCCcccCCCceE
Confidence 34444 68899999999999999977 9999999877555543321 11100 001111 01222223
Q ss_pred -cCCHHHHHHHHHHCCCEEEEEeee
Q 020710 284 -LHAEADVERALQKVGWKIRKRGLI 307 (322)
Q Consensus 284 -~~~~~~~~~~l~~aGf~vv~~~~~ 307 (322)
..+...+..+++++||+.+++-.+
T Consensus 244 FiPs~~~L~~wl~r~gF~~v~~v~~ 268 (315)
T PF08003_consen 244 FIPSVAALKNWLERAGFKDVRCVDV 268 (315)
T ss_pred EeCCHHHHHHHHHHcCCceEEEecC
Confidence 459999999999999998875443
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.8e-15 Score=124.91 Aligned_cols=152 Identities=24% Similarity=0.299 Sum_probs=114.5
Q ss_pred HHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccc
Q 020710 135 ENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLE 214 (322)
Q Consensus 135 ~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 214 (322)
..+.++|...+..+-.++||+|||||.....|.....+++|+|||.+|++.|.++--.. ...+.|+.
T Consensus 112 ~~l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~a~~ltGvDiS~nMl~kA~eKg~YD-------------~L~~Aea~ 178 (287)
T COG4976 112 ELLAEMIGKADLGPFRRMLDLGCGTGLTGEALRDMADRLTGVDISENMLAKAHEKGLYD-------------TLYVAEAV 178 (287)
T ss_pred HHHHHHHHhccCCccceeeecccCcCcccHhHHHHHhhccCCchhHHHHHHHHhccchH-------------HHHHHHHH
Confidence 44556666554445689999999999999999888889999999999999998764322 34444443
Q ss_pred cC-----CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCCCCCccccccCCHHH
Q 020710 215 SL-----DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEAD 289 (322)
Q Consensus 215 ~~-----~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (322)
.+ +.+||+|+...|+.++-. ++.++--...++.+++++.|...+...+ +.+. -.....|-|+...
T Consensus 179 ~Fl~~~~~er~DLi~AaDVl~YlG~--Le~~~~~aa~~L~~gGlfaFSvE~l~~~-----~~f~---l~ps~RyAH~~~Y 248 (287)
T COG4976 179 LFLEDLTQERFDLIVAADVLPYLGA--LEGLFAGAAGLLAPGGLFAFSVETLPDD-----GGFV---LGPSQRYAHSESY 248 (287)
T ss_pred HHhhhccCCcccchhhhhHHHhhcc--hhhHHHHHHHhcCCCceEEEEecccCCC-----CCee---cchhhhhccchHH
Confidence 21 688999999999999998 7799999999888888887764443211 1111 1233566788999
Q ss_pred HHHHHHHCCCEEEEEeeeec
Q 020710 290 VERALQKVGWKIRKRGLITT 309 (322)
Q Consensus 290 ~~~~l~~aGf~vv~~~~~~~ 309 (322)
+..++...||+++.++.+..
T Consensus 249 Vr~~l~~~Gl~~i~~~~tti 268 (287)
T COG4976 249 VRALLAASGLEVIAIEDTTI 268 (287)
T ss_pred HHHHHHhcCceEEEeecccc
Confidence 99999999999999876653
|
|
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.5e-16 Score=117.32 Aligned_cols=95 Identities=31% Similarity=0.409 Sum_probs=62.1
Q ss_pred EEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--CCCccEEEEccc
Q 020710 153 CDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL--DGKYDTVVCLDV 228 (322)
Q Consensus 153 LDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~fD~V~~~~~ 228 (322)
||||||+|.++..+.+. +.+++|+|+|+.|++.+++++........ ..+.+...|.... .++||+|++.++
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~fD~V~~~~v 75 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNF-----ERLRFDVLDLFDYDPPESFDLVVASNV 75 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---E-----EEEE--SSS---CCC----SEEEEE-T
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcce-----eEEEeecCChhhcccccccceehhhhh
Confidence 79999999999999988 77899999999999999888877553210 0013333333322 259999999999
Q ss_pred ccccCcchHHHHHHHHHhccCCeEEE
Q 020710 229 LIHYPQSKADGMIAHLASLAEKRLIL 254 (322)
Q Consensus 229 l~~~~~~~~~~~l~~l~~~~~~~~il 254 (322)
+||+++ ...+++++++++++||++
T Consensus 76 l~~l~~--~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 76 LHHLED--IEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp TS--S---HHHHHHHHTTT-TSS-EE
T ss_pred Hhhhhh--HHHHHHHHHHHcCCCCCC
Confidence 999966 669999999999888865
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.57 E-value=9.3e-14 Score=116.28 Aligned_cols=127 Identities=22% Similarity=0.293 Sum_probs=97.4
Q ss_pred CCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-CCCccEEEEc
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-DGKYDTVVCL 226 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~fD~V~~~ 226 (322)
++.+|||+|||+|.++..+++.+.+|+++|+|+.|++.++++....+.. ++++.+|+.+. .++||+|+++
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~---------~~~~~~d~~~~~~~~fD~Vi~n 89 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENAKLNNVG---------LDVVMTDLFKGVRGKFDVILFN 89 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCCc---------eEEEEcccccccCCcccEEEEC
Confidence 4678999999999999999998879999999999999999998765442 27888897654 6799999999
Q ss_pred ccccccCcch-------------------HHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCCCCCccccccCCH
Q 020710 227 DVLIHYPQSK-------------------ADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAE 287 (322)
Q Consensus 227 ~~l~~~~~~~-------------------~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (322)
..+++.+++. ...+++++.++++++|.+.+.... ....
T Consensus 90 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~-----------------------~~~~ 146 (179)
T TIGR00537 90 PPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSS-----------------------LNGE 146 (179)
T ss_pred CCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEec-----------------------cCCh
Confidence 8887765421 356788888877766655442211 1125
Q ss_pred HHHHHHHHHCCCEEEEEee
Q 020710 288 ADVERALQKVGWKIRKRGL 306 (322)
Q Consensus 288 ~~~~~~l~~aGf~vv~~~~ 306 (322)
.++.+.+++.||++.....
T Consensus 147 ~~~~~~l~~~gf~~~~~~~ 165 (179)
T TIGR00537 147 PDTFDKLDERGFRYEIVAE 165 (179)
T ss_pred HHHHHHHHhCCCeEEEEEE
Confidence 6889999999998776543
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.5e-13 Score=124.29 Aligned_cols=145 Identities=12% Similarity=0.082 Sum_probs=98.8
Q ss_pred HHHhchhhHHHHHHHhcCCCcccchhhhhhcCchhHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc---CCEEE
Q 020710 98 REYFNNSGFQRWKKIYGETDDVNRVQLDIRLGHSKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ---GAIVS 174 (322)
Q Consensus 98 ~~~f~~~~~~~w~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~---~~~v~ 174 (322)
+-+||..+-+-|.+++...+.+. ...+. ..++...+.+... ..++.+|||+|||+|..+..|++. +.+|+
T Consensus 20 ~~~yd~~G~~lf~~i~~~peYy~-tr~E~-----~il~~~~~~ia~~-~~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~ 92 (301)
T TIGR03438 20 KYFYDARGSELFEQICELPEYYP-TRTEA-----AILERHADEIAAA-TGAGCELVELGSGSSRKTRLLLDALRQPARYV 92 (301)
T ss_pred hhcccchHHHHHHHHHCCCcccc-HHHHH-----HHHHHHHHHHHHh-hCCCCeEEecCCCcchhHHHHHHhhccCCeEE
Confidence 46889988888998887443332 11111 1223323322221 124578999999999999999987 57899
Q ss_pred EEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC---CCCc-----cEEEEcccccccCcchHHHHHHHHHh
Q 020710 175 ASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL---DGKY-----DTVVCLDVLIHYPQSKADGMIAHLAS 246 (322)
Q Consensus 175 gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~f-----D~V~~~~~l~~~~~~~~~~~l~~l~~ 246 (322)
++|+|++|++.+++++....... .+.++++|+.+. ...+ .++++..+++|+++++...+++++++
T Consensus 93 ~iDiS~~mL~~a~~~l~~~~p~~-------~v~~i~gD~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~ 165 (301)
T TIGR03438 93 PIDISADALKESAAALAADYPQL-------EVHGICADFTQPLALPPEPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQ 165 (301)
T ss_pred EEECCHHHHHHHHHHHHhhCCCc-------eEEEEEEcccchhhhhcccccCCeEEEEecccccCCCHHHHHHHHHHHHH
Confidence 99999999999999876532211 126788998653 2333 34444567888988778899999999
Q ss_pred ccCCeEEEEE
Q 020710 247 LAEKRLILSF 256 (322)
Q Consensus 247 ~~~~~~il~~ 256 (322)
.+++|+.+.+
T Consensus 166 ~L~pgG~~li 175 (301)
T TIGR03438 166 LLGPGGGLLI 175 (301)
T ss_pred hcCCCCEEEE
Confidence 8877665543
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.8e-13 Score=114.81 Aligned_cols=120 Identities=21% Similarity=0.185 Sum_probs=94.4
Q ss_pred CCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--CCCccEE
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL--DGKYDTV 223 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~fD~V 223 (322)
++.+|||+|||+|..+..++.. +++|+++|+|+.|++.++++....+..+ ++|+.+|+.+. .++||+|
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~--------i~~~~~d~~~~~~~~~fDlV 116 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKN--------VTVVHGRAEEFGQEEKFDVV 116 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCC--------EEEEeccHhhCCCCCCccEE
Confidence 4789999999999999998864 6899999999999999999998877643 38999998776 4689999
Q ss_pred EEcccccccCcchHHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCCCCCccccccCCHHHHHHHHHHCCCEEEE
Q 020710 224 VCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQKVGWKIRK 303 (322)
Q Consensus 224 ~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~vv~ 303 (322)
++.. +.+ ...+++.+.+++++||.+.+.... ....+++++.++.|+.+..
T Consensus 117 ~~~~----~~~--~~~~l~~~~~~LkpGG~lv~~~~~------------------------~~~~~l~~~~~~~~~~~~~ 166 (187)
T PRK00107 117 TSRA----VAS--LSDLVELCLPLLKPGGRFLALKGR------------------------DPEEEIAELPKALGGKVEE 166 (187)
T ss_pred EEcc----ccC--HHHHHHHHHHhcCCCeEEEEEeCC------------------------ChHHHHHHHHHhcCceEee
Confidence 9864 233 568999999988777766553211 1245788888888998766
Q ss_pred Ee
Q 020710 304 RG 305 (322)
Q Consensus 304 ~~ 305 (322)
+.
T Consensus 167 ~~ 168 (187)
T PRK00107 167 VI 168 (187)
T ss_pred eE
Confidence 43
|
|
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.6e-13 Score=113.48 Aligned_cols=123 Identities=20% Similarity=0.175 Sum_probs=90.5
Q ss_pred CCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--CCCccEE
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL--DGKYDTV 223 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~fD~V 223 (322)
++.+|||+|||+|.++..++.. +.+|+++|+|+.|++.++++..+.+..+ ++++++|+.+. +++||+|
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~--------i~~i~~d~~~~~~~~~fD~I 113 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNN--------VEIVNGRAEDFQHEEQFDVI 113 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCC--------eEEEecchhhccccCCccEE
Confidence 4789999999999999998865 4689999999999999999887766532 38999999875 5799999
Q ss_pred EEcccccccCcchHHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCCCCCccccccCCHHHHHHHHHH---CCCE
Q 020710 224 VCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQK---VGWK 300 (322)
Q Consensus 224 ~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---aGf~ 300 (322)
++.. +++ ...+++.+.++++++|.+.+.... ....++..+.++ .||+
T Consensus 114 ~s~~-~~~-----~~~~~~~~~~~LkpgG~lvi~~~~------------------------~~~~~~~~~~e~~~~~~~~ 163 (181)
T TIGR00138 114 TSRA-LAS-----LNVLLELTLNLLKVGGYFLAYKGK------------------------KYLDEIEEAKRKCQVLGVE 163 (181)
T ss_pred Eehh-hhC-----HHHHHHHHHHhcCCCCEEEEEcCC------------------------CcHHHHHHHHHhhhhcCce
Confidence 9865 333 346777778877666666543211 123344444444 7999
Q ss_pred EEEEeeee
Q 020710 301 IRKRGLIT 308 (322)
Q Consensus 301 vv~~~~~~ 308 (322)
.+++....
T Consensus 164 ~~~~~~~~ 171 (181)
T TIGR00138 164 PLEVPPLT 171 (181)
T ss_pred EeeccccC
Confidence 88876554
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=7.7e-14 Score=115.74 Aligned_cols=125 Identities=21% Similarity=0.314 Sum_probs=93.9
Q ss_pred HHHHHHhcCCCcccchhhhhhcCchhHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHH
Q 020710 107 QRWKKIYGETDDVNRVQLDIRLGHSKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEA 186 (322)
Q Consensus 107 ~~w~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a 186 (322)
+.|+..|.....+...+.. +.++.++++...++ .+.-|||||||+|..+..|.+.|..++|+|||+.|++.|
T Consensus 17 d~eA~kYt~nsri~~IQ~e-------m~eRaLELLalp~~-~~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a 88 (270)
T KOG1541|consen 17 DTEAPKYTQNSRIVLIQAE-------MAERALELLALPGP-KSGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQA 88 (270)
T ss_pred hhhhhhccccceeeeehHH-------HHHHHHHHhhCCCC-CCcEEEEeccCCCcchheeccCCceEEeecCCHHHHHHH
Confidence 3568888776555554443 45778888876633 567899999999999999999999999999999999999
Q ss_pred HHHhHHhhhccCCCCCCCCCceEEcccccC----CCCccEEEEccccccc---------CcchHHHHHHHHHhccCCeE
Q 020710 187 RKKAEEELLADNGGEAPVMPKFEVKDLESL----DGKYDTVVCLDVLIHY---------PQSKADGMIAHLASLAEKRL 252 (322)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~~fD~V~~~~~l~~~---------~~~~~~~~l~~l~~~~~~~~ 252 (322)
.++--+ + .++.+|+-+- +++||.+|+...++++ |...+..++..|+.+++.+.
T Consensus 89 ~~~e~e-g------------dlil~DMG~GlpfrpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~ 154 (270)
T KOG1541|consen 89 VERELE-G------------DLILCDMGEGLPFRPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGA 154 (270)
T ss_pred HHhhhh-c------------CeeeeecCCCCCCCCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCc
Confidence 874332 2 7888887542 7999999998777543 33446677888888765443
|
|
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=99.53 E-value=1e-13 Score=119.03 Aligned_cols=148 Identities=22% Similarity=0.218 Sum_probs=100.2
Q ss_pred CCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHH-hhhccCC---CCCCCCCceEEcccccC----CC
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEE-ELLADNG---GEAPVMPKFEVKDLESL----DG 218 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~-~~~~~~~---~~~~~~~~~~~~d~~~~----~~ 218 (322)
.++.+||..|||.|..+..|+++|.+|+|+|+|+.+++.+.+.... ....... ......+++.++|+.++ .+
T Consensus 36 ~~~~rvLvPgCG~g~D~~~La~~G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~g 115 (218)
T PF05724_consen 36 KPGGRVLVPGCGKGYDMLWLAEQGHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPEDVG 115 (218)
T ss_dssp STSEEEEETTTTTSCHHHHHHHTTEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSCHH
T ss_pred CCCCeEEEeCCCChHHHHHHHHCCCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhhcC
Confidence 4677999999999999999999999999999999999998544322 1100000 00112358899999886 36
Q ss_pred CccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCCCCCccccccCCHHHHHHHHHHCC
Q 020710 219 KYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQKVG 298 (322)
Q Consensus 219 ~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG 298 (322)
+||+|+-..+|+-+|++...+..+++.+++++++.+.+.. +.+ +........|..+.+++++++. .+
T Consensus 116 ~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~--l~~----------~~~~~~GPPf~v~~~ev~~l~~-~~ 182 (218)
T PF05724_consen 116 KFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLIT--LEY----------PQGEMEGPPFSVTEEEVRELFG-PG 182 (218)
T ss_dssp SEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEE--EES-----------CSCSSSSS----HHHHHHHHT-TT
T ss_pred CceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEE--EEc----------CCcCCCCcCCCCCHHHHHHHhc-CC
Confidence 8999999999999999888999999999987766522210 100 0001112233458899999997 88
Q ss_pred CEEEEEeee
Q 020710 299 WKIRKRGLI 307 (322)
Q Consensus 299 f~vv~~~~~ 307 (322)
|++...+..
T Consensus 183 f~i~~l~~~ 191 (218)
T PF05724_consen 183 FEIEELEEE 191 (218)
T ss_dssp EEEEEEEEE
T ss_pred cEEEEEecc
Confidence 998876653
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.52 E-value=7.8e-14 Score=115.51 Aligned_cols=148 Identities=24% Similarity=0.344 Sum_probs=108.5
Q ss_pred HHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcc
Q 020710 135 ENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKD 212 (322)
Q Consensus 135 ~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d 212 (322)
.+++..+.. ....+|.|+|||+|..+..|+++ ++.++|+|-|++|++.|+++..+ ++|..+|
T Consensus 20 ~dLla~Vp~---~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~-------------~~f~~aD 83 (257)
T COG4106 20 RDLLARVPL---ERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPD-------------ATFEEAD 83 (257)
T ss_pred HHHHhhCCc---cccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCC-------------Cceeccc
Confidence 445555554 36789999999999999999998 78999999999999999877654 3899999
Q ss_pred cccC--CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEE-CCChhh---HHHHHHh------hccCCCCCCcc
Q 020710 213 LESL--DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSF-APKTFY---YDLLKRV------GELFPGPSKAT 280 (322)
Q Consensus 213 ~~~~--~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~-~~~~~~---~~~~~~~------~~~~~~~~~~~ 280 (322)
+.+. +..+|+++++.+|+++|+. ..++.++...+.+|+++.+ .|+++- ....... ...+.+.. ..
T Consensus 84 l~~w~p~~~~dllfaNAvlqWlpdH--~~ll~rL~~~L~Pgg~LAVQmPdN~depsH~~mr~~A~~~p~~~~l~~~~-~~ 160 (257)
T COG4106 84 LRTWKPEQPTDLLFANAVLQWLPDH--PELLPRLVSQLAPGGVLAVQMPDNLDEPSHRLMRETADEAPFAQELGGRG-LT 160 (257)
T ss_pred HhhcCCCCccchhhhhhhhhhcccc--HHHHHHHHHhhCCCceEEEECCCccCchhHHHHHHHHhcCchhhhhCccc-cc
Confidence 9887 5689999999999999994 4899999888877777755 233211 1111111 11222211 13
Q ss_pred ccccCCHHHHHHHHHHCCCEE
Q 020710 281 RAYLHAEADVERALQKVGWKI 301 (322)
Q Consensus 281 ~~~~~~~~~~~~~l~~aGf~v 301 (322)
+....+...+-++|...+.+|
T Consensus 161 r~~v~s~a~Yy~lLa~~~~rv 181 (257)
T COG4106 161 RAPLPSPAAYYELLAPLACRV 181 (257)
T ss_pred cCCCCCHHHHHHHhCccccee
Confidence 455668888888888887765
|
|
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.52 E-value=5.5e-13 Score=114.35 Aligned_cols=152 Identities=12% Similarity=0.062 Sum_probs=101.5
Q ss_pred HHHhhhcCCCCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhh-hc---cCCCCCCCCCceEEccc
Q 020710 138 MQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEEL-LA---DNGGEAPVMPKFEVKDL 213 (322)
Q Consensus 138 ~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~---~~~~~~~~~~~~~~~d~ 213 (322)
.+++......++.+||+.|||.|..+.+|+++|.+|+|+|+|+.+++.+.+...... +. ......-..++++++|+
T Consensus 33 ~~~~~~l~~~~~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~ 112 (226)
T PRK13256 33 VKHFSKLNINDSSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADI 112 (226)
T ss_pred HHHHHhcCCCCCCeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccC
Confidence 344443322356899999999999999999999999999999999998865321000 00 00000112359999999
Q ss_pred ccCC------CCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCCCCCccccccCCH
Q 020710 214 ESLD------GKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAE 287 (322)
Q Consensus 214 ~~~~------~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (322)
.+++ +.||+|+-..+++++|++...+..+++.+++++++.+.+.. +.++ . ......+..+.
T Consensus 113 f~l~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~--~~~~----------~-~~~GPPf~v~~ 179 (226)
T PRK13256 113 FNLPKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLV--MEHD----------K-KSQTPPYSVTQ 179 (226)
T ss_pred cCCCccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEE--EecC----------C-CCCCCCCcCCH
Confidence 8873 58999999999999999888999999999876655333211 1000 0 01112233578
Q ss_pred HHHHHHHHHCCCEEEE
Q 020710 288 ADVERALQKVGWKIRK 303 (322)
Q Consensus 288 ~~~~~~l~~aGf~vv~ 303 (322)
+++++++.+ +|++..
T Consensus 180 ~e~~~lf~~-~~~i~~ 194 (226)
T PRK13256 180 AELIKNFSA-KIKFEL 194 (226)
T ss_pred HHHHHhccC-CceEEE
Confidence 899998854 355443
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.51 E-value=6.3e-14 Score=134.86 Aligned_cols=149 Identities=16% Similarity=0.200 Sum_probs=106.6
Q ss_pred HHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccc
Q 020710 135 ENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLE 214 (322)
Q Consensus 135 ~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 214 (322)
..+++.+... ++.+|||||||+|.++..+++.+.+|+|+|+|+.|++.+++.... . .++.++++|+.
T Consensus 27 ~~il~~l~~~---~~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~~l~~a~~~~~~---~-------~~i~~~~~d~~ 93 (475)
T PLN02336 27 PEILSLLPPY---EGKSVLELGAGIGRFTGELAKKAGQVIALDFIESVIKKNESINGH---Y-------KNVKFMCADVT 93 (475)
T ss_pred hHHHhhcCcc---CCCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHHHHHHHHHHhcc---C-------CceEEEEeccc
Confidence 4455555432 467999999999999999999988999999999999887653221 1 12378889885
Q ss_pred c--C---CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCCCCCccccccCCHHH
Q 020710 215 S--L---DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEAD 289 (322)
Q Consensus 215 ~--~---~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (322)
. + +++||+|+|..+++|++++....++++++++++++|++.+....+... +.... ..... .+....+
T Consensus 94 ~~~~~~~~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~-----~~~~~--~~~~~-~~~~~~~ 165 (475)
T PLN02336 94 SPDLNISDGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCFHQS-----GDSKR--KNNPT-HYREPRF 165 (475)
T ss_pred ccccCCCCCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCC-----Ccccc--cCCCC-eecChHH
Confidence 3 2 578999999999999998777899999999988888776643322110 00000 00111 1235779
Q ss_pred HHHHHHHCCCEEEEE
Q 020710 290 VERALQKVGWKIRKR 304 (322)
Q Consensus 290 ~~~~l~~aGf~vv~~ 304 (322)
+.+++.++||.....
T Consensus 166 ~~~~f~~~~~~~~~~ 180 (475)
T PLN02336 166 YTKVFKECHTRDEDG 180 (475)
T ss_pred HHHHHHHheeccCCC
Confidence 999999999987653
|
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.50 E-value=7.6e-13 Score=111.54 Aligned_cols=133 Identities=16% Similarity=0.051 Sum_probs=96.7
Q ss_pred HHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEccc
Q 020710 136 NTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDL 213 (322)
Q Consensus 136 ~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~ 213 (322)
.+++.+.. .++.+|||+|||+|.++..+++. +.+|+++|+|+.+++.++++....+..+ ++++.+|+
T Consensus 22 ~~~~~l~~---~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~--------i~~~~~d~ 90 (187)
T PRK08287 22 LALSKLEL---HRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGN--------IDIIPGEA 90 (187)
T ss_pred HHHHhcCC---CCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCC--------eEEEecCc
Confidence 34445543 35789999999999999999887 4689999999999999999887665432 37888887
Q ss_pred ccC-CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCCCCCccccccCCHHHHHH
Q 020710 214 ESL-DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADVER 292 (322)
Q Consensus 214 ~~~-~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (322)
... .++||+|++....++ +..+++.+.+.+++++.+.+.... ..+.+++.+
T Consensus 91 ~~~~~~~~D~v~~~~~~~~-----~~~~l~~~~~~Lk~gG~lv~~~~~-----------------------~~~~~~~~~ 142 (187)
T PRK08287 91 PIELPGKADAIFIGGSGGN-----LTAIIDWSLAHLHPGGRLVLTFIL-----------------------LENLHSALA 142 (187)
T ss_pred hhhcCcCCCEEEECCCccC-----HHHHHHHHHHhcCCCeEEEEEEec-----------------------HhhHHHHHH
Confidence 533 678999999765443 446788888877777766542110 113567889
Q ss_pred HHHHCCCEEEEEeee
Q 020710 293 ALQKVGWKIRKRGLI 307 (322)
Q Consensus 293 ~l~~aGf~vv~~~~~ 307 (322)
++++.||+.++...+
T Consensus 143 ~l~~~g~~~~~~~~~ 157 (187)
T PRK08287 143 HLEKCGVSELDCVQL 157 (187)
T ss_pred HHHHCCCCcceEEEE
Confidence 999999986664333
|
|
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.6e-13 Score=121.70 Aligned_cols=112 Identities=24% Similarity=0.358 Sum_probs=82.7
Q ss_pred CCCeEEEECCCccc----chHHHHhc-------CCEEEEEeCCHHHHHHHHHHhHHh----hhc------------c--C
Q 020710 148 KGIAVCDAGCGTGS----LAIPLAKQ-------GAIVSASDISAAMVAEARKKAEEE----LLA------------D--N 198 (322)
Q Consensus 148 ~~~~VLDvGcG~G~----~~~~la~~-------~~~v~gvD~s~~~l~~a~~~~~~~----~~~------------~--~ 198 (322)
++.+|||+|||+|. ++..+++. +.+|+|+|+|+.|++.|++..-.. +.. + +
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 45799999999997 44455543 358999999999999999754110 000 0 0
Q ss_pred CCCC-CCCCceEEcccccC---CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEECCC
Q 020710 199 GGEA-PVMPKFEVKDLESL---DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPK 259 (322)
Q Consensus 199 ~~~~-~~~~~~~~~d~~~~---~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~ 259 (322)
++.. ..++.|.+.|+.+. +++||+|+|.++++|++++....+++++++.+++||++.+.+.
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~~ 243 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGHS 243 (264)
T ss_pred EChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEECc
Confidence 0000 01358999998775 5789999999999999887778999999999988888877543
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.4e-12 Score=111.53 Aligned_cols=111 Identities=27% Similarity=0.223 Sum_probs=80.0
Q ss_pred HHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCC-EEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEccccc
Q 020710 137 TMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGA-IVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLES 215 (322)
Q Consensus 137 ~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 215 (322)
+.+.+......++.+|||+|||+|.++..+++.+. +++++|+|+.+++.+++++...+... .++.+|+.+
T Consensus 25 l~~~l~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~---------~~~~~d~~~ 95 (223)
T PRK14967 25 LADALAAEGLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGVDV---------DVRRGDWAR 95 (223)
T ss_pred HHHHHHhcccCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCCee---------EEEECchhh
Confidence 33444333234578999999999999999998866 89999999999999999887665432 788888865
Q ss_pred C--CCCccEEEEcccccccCcc-------------------hHHHHHHHHHhccCCeEEEEE
Q 020710 216 L--DGKYDTVVCLDVLIHYPQS-------------------KADGMIAHLASLAEKRLILSF 256 (322)
Q Consensus 216 ~--~~~fD~V~~~~~l~~~~~~-------------------~~~~~l~~l~~~~~~~~il~~ 256 (322)
. +++||+|+++..+...+.. .+..+++++.++++++|.+.+
T Consensus 96 ~~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~ 157 (223)
T PRK14967 96 AVEFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLL 157 (223)
T ss_pred hccCCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEE
Confidence 4 5789999998543222110 134677778787776665554
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.8e-12 Score=114.18 Aligned_cols=136 Identities=28% Similarity=0.256 Sum_probs=95.8
Q ss_pred hhHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCCE-EEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceE
Q 020710 131 SKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAI-VSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFE 209 (322)
Q Consensus 131 ~~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~-v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~ 209 (322)
......+++.+... ..++.+|||+|||+|.++..+++.|.. |+|+|+|+.|++.|++++...+...++ .+.
T Consensus 103 h~tt~~~l~~l~~~-~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~-------~~~ 174 (250)
T PRK00517 103 HPTTRLCLEALEKL-VLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNV-------YLP 174 (250)
T ss_pred CHHHHHHHHHHHhh-cCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCceE-------EEc
Confidence 34445555565543 246789999999999999988888764 999999999999999998776543211 222
Q ss_pred EcccccCCCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCCCCCccccccCCHHH
Q 020710 210 VKDLESLDGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEAD 289 (322)
Q Consensus 210 ~~d~~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (322)
.+ +.+||+|+++... +.+..+++++.+.+++||++.+..-. ....++
T Consensus 175 ~~-----~~~fD~Vvani~~-----~~~~~l~~~~~~~LkpgG~lilsgi~-----------------------~~~~~~ 221 (250)
T PRK00517 175 QG-----DLKADVIVANILA-----NPLLELAPDLARLLKPGGRLILSGIL-----------------------EEQADE 221 (250)
T ss_pred cC-----CCCcCEEEEcCcH-----HHHHHHHHHHHHhcCCCcEEEEEECc-----------------------HhhHHH
Confidence 22 2279999986432 22557888888888777766653110 013568
Q ss_pred HHHHHHHCCCEEEEEeee
Q 020710 290 VERALQKVGWKIRKRGLI 307 (322)
Q Consensus 290 ~~~~l~~aGf~vv~~~~~ 307 (322)
+.+.+++.||+++.....
T Consensus 222 v~~~l~~~Gf~~~~~~~~ 239 (250)
T PRK00517 222 VLEAYEEAGFTLDEVLER 239 (250)
T ss_pred HHHHHHHCCCEEEEEEEe
Confidence 899999999999876554
|
|
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.1e-12 Score=117.49 Aligned_cols=153 Identities=24% Similarity=0.189 Sum_probs=103.2
Q ss_pred hhhhhcCchhHHHHHHH-HhhhcCCCCCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCC
Q 020710 123 QLDIRLGHSKTVENTMQ-MLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNG 199 (322)
Q Consensus 123 ~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~ 199 (322)
...+++..+.++...+. ++... ++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|++++...+..+++
T Consensus 98 vlipr~~te~lv~~~l~~~~~~~---~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i 174 (284)
T TIGR03533 98 VLIPRSPIAELIEDGFAPWLEPE---PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRV 174 (284)
T ss_pred CccCCCchHHHHHHHHHHHhccC---CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcE
Confidence 33355555556666554 33222 3578999999999999999987 579999999999999999999887765444
Q ss_pred CCCCCCCceEEcccccC--CCCccEEEEcccc------c-------ccCc----------chHHHHHHHHHhccCCeEEE
Q 020710 200 GEAPVMPKFEVKDLESL--DGKYDTVVCLDVL------I-------HYPQ----------SKADGMIAHLASLAEKRLIL 254 (322)
Q Consensus 200 ~~~~~~~~~~~~d~~~~--~~~fD~V~~~~~l------~-------~~~~----------~~~~~~l~~l~~~~~~~~il 254 (322)
.|+++|+.+. +++||+|+++--. . |-|. +....+++.+.+.++++|.+
T Consensus 175 -------~~~~~D~~~~~~~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l 247 (284)
T TIGR03533 175 -------TLIQSDLFAALPGRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVL 247 (284)
T ss_pred -------EEEECchhhccCCCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEE
Confidence 8999998543 4589999996321 1 1111 11246677777777766666
Q ss_pred EECCChhhHHHHHHhhccCCCCCCccccccCCHHHHHHHHHHCCCEEEEEeeeecc
Q 020710 255 SFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQKVGWKIRKRGLITTQ 310 (322)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~vv~~~~~~~~ 310 (322)
.+... ++.+.+.+++.++||.-...+.....
T Consensus 248 ~~e~g-------------------------~~~~~v~~~~~~~~~~~~~~~~~~~~ 278 (284)
T TIGR03533 248 VVEVG-------------------------NSMEALEEAYPDVPFTWLEFENGGDG 278 (284)
T ss_pred EEEEC-------------------------cCHHHHHHHHHhCCCceeeecCCCcE
Confidence 55221 12357778888888877665544433
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.4e-12 Score=107.40 Aligned_cols=129 Identities=22% Similarity=0.262 Sum_probs=94.1
Q ss_pred CCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--CCCccEEEE
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL--DGKYDTVVC 225 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~fD~V~~ 225 (322)
++.+|||+|||+|.++..+++.+.+++++|+|+.+++.+++++...+..++ .+.+..+|+.+. +++||+|++
T Consensus 23 ~~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~------~~~~~~~d~~~~~~~~~~d~vi~ 96 (188)
T PRK14968 23 KGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAKLNNIRNN------GVEVIRSDLFEPFRGDKFDVILF 96 (188)
T ss_pred CCCEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHHHHHHHHcCCCCc------ceEEEeccccccccccCceEEEE
Confidence 567899999999999999999999999999999999999998876655432 027788887554 458999998
Q ss_pred cccccccC-------------------cchHHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCCCCCccccccCC
Q 020710 226 LDVLIHYP-------------------QSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHA 286 (322)
Q Consensus 226 ~~~l~~~~-------------------~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (322)
+..+.+.. ......+++++.+++++++.+.+.... ...
T Consensus 97 n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~-----------------------~~~ 153 (188)
T PRK14968 97 NPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSS-----------------------LTG 153 (188)
T ss_pred CCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcc-----------------------cCC
Confidence 76543311 111356788888877666654432111 123
Q ss_pred HHHHHHHHHHCCCEEEEEe
Q 020710 287 EADVERALQKVGWKIRKRG 305 (322)
Q Consensus 287 ~~~~~~~l~~aGf~vv~~~ 305 (322)
.+++.+++.++||++....
T Consensus 154 ~~~l~~~~~~~g~~~~~~~ 172 (188)
T PRK14968 154 EDEVLEYLEKLGFEAEVVA 172 (188)
T ss_pred HHHHHHHHHHCCCeeeeee
Confidence 5688999999999987654
|
|
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=99.44 E-value=1e-12 Score=115.88 Aligned_cols=143 Identities=27% Similarity=0.294 Sum_probs=101.6
Q ss_pred hcCchhHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCC
Q 020710 127 RLGHSKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPV 204 (322)
Q Consensus 127 ~~~~~~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~ 204 (322)
+.....++..+++.+.. .+.+|||+|||+|.++..+++. +.+++|+|+|+.+++.++++....+..+
T Consensus 70 ~~~~~~l~~~~l~~~~~----~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~------- 138 (251)
T TIGR03534 70 RPDTEELVEAALERLKK----GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDN------- 138 (251)
T ss_pred CCChHHHHHHHHHhccc----CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCe-------
Confidence 33444555666666543 3568999999999999999987 6689999999999999999987765532
Q ss_pred CCceEEcccccC--CCCccEEEEcccccc------cCcch------------------HHHHHHHHHhccCCeEEEEECC
Q 020710 205 MPKFEVKDLESL--DGKYDTVVCLDVLIH------YPQSK------------------ADGMIAHLASLAEKRLILSFAP 258 (322)
Q Consensus 205 ~~~~~~~d~~~~--~~~fD~V~~~~~l~~------~~~~~------------------~~~~l~~l~~~~~~~~il~~~~ 258 (322)
+.++++|+.+. +++||+|+++..+.. +.... ...+++.+.++++++|.+.+..
T Consensus 139 -~~~~~~d~~~~~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~ 217 (251)
T TIGR03534 139 -VTFLQSDWFEPLPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEI 217 (251)
T ss_pred -EEEEECchhccCcCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 38899998654 678999999644321 21111 2356778888777776665521
Q ss_pred ChhhHHHHHHhhccCCCCCCccccccCCHHHHHHHHHHCCCEEEEEe
Q 020710 259 KTFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQKVGWKIRKRG 305 (322)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~vv~~~ 305 (322)
. +...+++.++++++||+.+...
T Consensus 218 ~------------------------~~~~~~~~~~l~~~gf~~v~~~ 240 (251)
T TIGR03534 218 G------------------------YDQGEAVRALFEAAGFADVETR 240 (251)
T ss_pred C------------------------ccHHHHHHHHHHhCCCCceEEE
Confidence 1 1135689999999999877653
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >PF07109 Mg-por_mtran_C: Magnesium-protoporphyrin IX methyltransferase C-terminus; InterPro: IPR010940 This entry represents the C terminus (approximately 100 residues) of bacterial and eukaryotic Magnesium-protoporphyrin IX methyltransferase (2 | Back alignment and domain information |
|---|
Probab=99.44 E-value=5.1e-13 Score=97.24 Aligned_cols=97 Identities=46% Similarity=0.867 Sum_probs=92.1
Q ss_pred EcccccccCcchHHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCCCCCccccccCCHHHHHHHHHHCCCEEEEE
Q 020710 225 CLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQKVGWKIRKR 304 (322)
Q Consensus 225 ~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~vv~~ 304 (322)
|.++|.|+|.+...+++.+|.....+.+|+.+.|.+.....+..+|++|++.+..+..+.+.++++.+++.++||++.+.
T Consensus 1 ~mDvLIHYp~~d~~~~l~~La~~t~~~~ifTfAP~T~~L~~m~~iG~lFP~~dRsp~i~~~~e~~l~~~l~~~g~~~~r~ 80 (97)
T PF07109_consen 1 CMDVLIHYPAEDAAQMLAHLASRTRGSLIFTFAPRTPLLALMHAIGKLFPRPDRSPRIYPHREEDLRRALAAAGWRIGRT 80 (97)
T ss_pred CcceEeccCHHHHHHHHHHHHHhccCcEEEEECCCCHHHHHHHHHhccCCCCCCCCcEEEeCHHHHHHHHHhCCCeeeec
Confidence 45677899988899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeecceehhhhhhhcc
Q 020710 305 GLITTQFYFARLVEAVP 321 (322)
Q Consensus 305 ~~~~~~~~f~~~~~~~~ 321 (322)
+.+...|||+.++|++|
T Consensus 81 ~ris~gFY~S~llE~~r 97 (97)
T PF07109_consen 81 ERISSGFYISQLLEAVR 97 (97)
T ss_pred ccccCcChHHHHhhccC
Confidence 99999999999999876
|
1.1.11 from EC). This converts magnesium-protoporphyrin IX to magnesium-protoporphyrin IX metylester using S-adenosyl-L-methionine as a cofactor [].; GO: 0046406 magnesium protoporphyrin IX methyltransferase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process |
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.44 E-value=8.4e-13 Score=112.59 Aligned_cols=101 Identities=22% Similarity=0.178 Sum_probs=77.7
Q ss_pred CCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEccc-ccC-----CCC
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDL-ESL-----DGK 219 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~-~~~-----~~~ 219 (322)
++.+|||+|||+|.++..+++. +.+|+|+|+|+.|++.++++....+..+ +.|+++|+ ..+ +++
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~--------v~~~~~d~~~~l~~~~~~~~ 111 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTN--------LRLLCGDAVEVLLDMFPDGS 111 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCC--------EEEEecCHHHHHHHHcCccc
Confidence 3679999999999999999876 5689999999999999999887665422 38999998 432 578
Q ss_pred ccEEEEcccccccCc------chHHHHHHHHHhccCCeEEEEE
Q 020710 220 YDTVVCLDVLIHYPQ------SKADGMIAHLASLAEKRLILSF 256 (322)
Q Consensus 220 fD~V~~~~~l~~~~~------~~~~~~l~~l~~~~~~~~il~~ 256 (322)
||+|++.....+... .....+++++.++++++|++.+
T Consensus 112 ~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i 154 (202)
T PRK00121 112 LDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHF 154 (202)
T ss_pred cceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEE
Confidence 999998765432221 1135789999998877776654
|
|
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.1e-12 Score=115.99 Aligned_cols=131 Identities=26% Similarity=0.236 Sum_probs=93.0
Q ss_pred cccchhhhhhcCchhHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhh
Q 020710 118 DVNRVQLDIRLGHSKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELL 195 (322)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~ 195 (322)
.++.....+++..+.+++.+++.+... .+..+|||+|||+|.++..++.. +.+|+|+|+|+.+++.|+++....+.
T Consensus 86 ~v~~~vliPr~ete~lv~~~l~~~~~~--~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~ 163 (284)
T TIGR00536 86 FVNEHVLIPRPETEELVEKALASLISQ--NPILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQL 163 (284)
T ss_pred EECCCCcCCCCccHHHHHHHHHHhhhc--CCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC
Confidence 344444456666777888877665432 12368999999999999999987 46899999999999999999887766
Q ss_pred ccCCCCCCCCCceEEcccccC--CCCccEEEEcc-------------cccccCc----------chHHHHHHHHHhccCC
Q 020710 196 ADNGGEAPVMPKFEVKDLESL--DGKYDTVVCLD-------------VLIHYPQ----------SKADGMIAHLASLAEK 250 (322)
Q Consensus 196 ~~~~~~~~~~~~~~~~d~~~~--~~~fD~V~~~~-------------~l~~~~~----------~~~~~~l~~l~~~~~~ 250 (322)
.+++ .|+++|+.+. .++||+|+++- ++.|-|. .....+++.+.+.+++
T Consensus 164 ~~~v-------~~~~~d~~~~~~~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~ 236 (284)
T TIGR00536 164 EHRV-------EFIQSNLFEPLAGQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKP 236 (284)
T ss_pred CCcE-------EEEECchhccCcCCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccC
Confidence 5434 8999998664 34899999962 2333331 1244667777777776
Q ss_pred eEEEEEC
Q 020710 251 RLILSFA 257 (322)
Q Consensus 251 ~~il~~~ 257 (322)
+|++.+.
T Consensus 237 gG~l~~e 243 (284)
T TIGR00536 237 NGFLVCE 243 (284)
T ss_pred CCEEEEE
Confidence 6666553
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.2e-12 Score=115.13 Aligned_cols=144 Identities=31% Similarity=0.387 Sum_probs=102.3
Q ss_pred hhhcCchhHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCC-EEEEEeCCHHHHHHHHHHhHHhhhccCCCCCC
Q 020710 125 DIRLGHSKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGA-IVSASDISAAMVAEARKKAEEELLADNGGEAP 203 (322)
Q Consensus 125 ~~~~~~~~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~ 203 (322)
.+..++..+....+++|... ..++.+|||||||+|.++...++.|+ +|+|+|++|.+++.|++++..+++..
T Consensus 139 AFGTG~H~TT~lcl~~l~~~-~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~------ 211 (295)
T PF06325_consen 139 AFGTGHHPTTRLCLELLEKY-VKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVED------ 211 (295)
T ss_dssp SS-SSHCHHHHHHHHHHHHH-SSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TT------
T ss_pred cccCCCCHHHHHHHHHHHHh-ccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCe------
Confidence 34445566777777777765 35678999999999999999999987 59999999999999999999988876
Q ss_pred CCCceEEccccc-CCCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCCCCCcccc
Q 020710 204 VMPKFEVKDLES-LDGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRA 282 (322)
Q Consensus 204 ~~~~~~~~d~~~-~~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (322)
.+......+ ..++||+|+++-. .+.+..++..+.+++++++.+++.- ++
T Consensus 212 ---~~~v~~~~~~~~~~~dlvvANI~-----~~vL~~l~~~~~~~l~~~G~lIlSG-------------Il--------- 261 (295)
T PF06325_consen 212 ---RIEVSLSEDLVEGKFDLVVANIL-----ADVLLELAPDIASLLKPGGYLILSG-------------IL--------- 261 (295)
T ss_dssp ---CEEESCTSCTCCS-EEEEEEES------HHHHHHHHHHCHHHEEEEEEEEEEE-------------EE---------
T ss_pred ---eEEEEEecccccccCCEEEECCC-----HHHHHHHHHHHHHhhCCCCEEEEcc-------------cc---------
Confidence 343322222 2689999997533 2336677888888777777665521 10
Q ss_pred ccCCHHHHHHHHHHCCCEEEEEeee
Q 020710 283 YLHAEADVERALQKVGWKIRKRGLI 307 (322)
Q Consensus 283 ~~~~~~~~~~~l~~aGf~vv~~~~~ 307 (322)
-...+++.+.+++ ||++++....
T Consensus 262 -~~~~~~v~~a~~~-g~~~~~~~~~ 284 (295)
T PF06325_consen 262 -EEQEDEVIEAYKQ-GFELVEEREE 284 (295)
T ss_dssp -GGGHHHHHHHHHT-TEEEEEEEEE
T ss_pred -HHHHHHHHHHHHC-CCEEEEEEEE
Confidence 0135788888877 9999876544
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.9e-12 Score=110.61 Aligned_cols=92 Identities=15% Similarity=0.153 Sum_probs=73.2
Q ss_pred HHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc---CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceE
Q 020710 133 TVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ---GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFE 209 (322)
Q Consensus 133 ~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~ 209 (322)
....+++.+.. .++.+|||||||+|..+..+++. +.+|+++|++++|++.+++++...+..+++ ++.
T Consensus 60 ~~~~~~~~l~~---~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v-------~~~ 129 (205)
T PRK13944 60 MVAMMCELIEP---RPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVV-------EVY 129 (205)
T ss_pred HHHHHHHhcCC---CCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcE-------EEE
Confidence 34555555543 35789999999999999888875 468999999999999999998877654333 889
Q ss_pred EcccccC---CCCccEEEEcccccccCc
Q 020710 210 VKDLESL---DGKYDTVVCLDVLIHYPQ 234 (322)
Q Consensus 210 ~~d~~~~---~~~fD~V~~~~~l~~~~~ 234 (322)
.+|+.+. .++||+|++..+++|+++
T Consensus 130 ~~d~~~~~~~~~~fD~Ii~~~~~~~~~~ 157 (205)
T PRK13944 130 HGDGKRGLEKHAPFDAIIVTAAASTIPS 157 (205)
T ss_pred ECCcccCCccCCCccEEEEccCcchhhH
Confidence 9998653 468999999999888764
|
|
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.41 E-value=4.4e-12 Score=114.02 Aligned_cols=137 Identities=26% Similarity=0.291 Sum_probs=96.3
Q ss_pred hHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCC-EEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEE
Q 020710 132 KTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGA-IVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEV 210 (322)
Q Consensus 132 ~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~ 210 (322)
.+....++++... ..++.+|||+|||+|.++..+++.|. +|+|+|+|+.|++.++++....+..+++ .+..
T Consensus 144 ~tt~l~l~~l~~~-~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~-------~~~~ 215 (288)
T TIGR00406 144 PTTSLCLEWLEDL-DLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRL-------QVKL 215 (288)
T ss_pred HHHHHHHHHHHhh-cCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcce-------EEEe
Confidence 4444555555543 23578999999999999999988865 7999999999999999998876654422 5555
Q ss_pred cccccC-CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCCCCCccccccCCHHH
Q 020710 211 KDLESL-DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEAD 289 (322)
Q Consensus 211 ~d~~~~-~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (322)
.+.... +++||+|+++...+ .+..++.++.+++++||.+.+..-. ....++
T Consensus 216 ~~~~~~~~~~fDlVvan~~~~-----~l~~ll~~~~~~LkpgG~li~sgi~-----------------------~~~~~~ 267 (288)
T TIGR00406 216 IYLEQPIEGKADVIVANILAE-----VIKELYPQFSRLVKPGGWLILSGIL-----------------------ETQAQS 267 (288)
T ss_pred cccccccCCCceEEEEecCHH-----HHHHHHHHHHHHcCCCcEEEEEeCc-----------------------HhHHHH
Confidence 554333 67899999975432 2457888888888777766552110 012457
Q ss_pred HHHHHHHCCCEEEEEe
Q 020710 290 VERALQKVGWKIRKRG 305 (322)
Q Consensus 290 ~~~~l~~aGf~vv~~~ 305 (322)
+.+.+++. |++++..
T Consensus 268 v~~~~~~~-f~~~~~~ 282 (288)
T TIGR00406 268 VCDAYEQG-FTVVEIR 282 (288)
T ss_pred HHHHHHcc-CceeeEe
Confidence 77778766 8877653
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.3e-12 Score=119.16 Aligned_cols=97 Identities=31% Similarity=0.339 Sum_probs=73.6
Q ss_pred cccchhhhhhcCchhHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhh
Q 020710 118 DVNRVQLDIRLGHSKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELL 195 (322)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~ 195 (322)
.++.....+++..+.+++.+++.+. ++.+|||+|||+|.++..++.. +++|+++|+|+.|++.++++....+.
T Consensus 226 ~V~p~vLIPRpeTE~LVe~aL~~l~-----~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~ 300 (423)
T PRK14966 226 AVNPNVLIPRPETEHLVEAVLARLP-----ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGA 300 (423)
T ss_pred EeCCCccCCCccHHHHHHHhhhccC-----CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC
Confidence 3444444556656666666665543 3468999999999999998865 67899999999999999999877654
Q ss_pred ccCCCCCCCCCceEEcccccC----CCCccEEEEccc
Q 020710 196 ADNGGEAPVMPKFEVKDLESL----DGKYDTVVCLDV 228 (322)
Q Consensus 196 ~~~~~~~~~~~~~~~~d~~~~----~~~fD~V~~~~~ 228 (322)
. +.|+++|+.+. .++||+|+|+--
T Consensus 301 r---------V~fi~gDl~e~~l~~~~~FDLIVSNPP 328 (423)
T PRK14966 301 R---------VEFAHGSWFDTDMPSEGKWDIIVSNPP 328 (423)
T ss_pred c---------EEEEEcchhccccccCCCccEEEECCC
Confidence 2 28999998543 467999999764
|
|
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.41 E-value=5.8e-12 Score=111.44 Aligned_cols=148 Identities=23% Similarity=0.249 Sum_probs=106.8
Q ss_pred hhhcCchhHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCCE-EEEEeCCHHHHHHHHHHhHHhhhccCCCCCC
Q 020710 125 DIRLGHSKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAI-VSASDISAAMVAEARKKAEEELLADNGGEAP 203 (322)
Q Consensus 125 ~~~~~~~~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~-v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~ 203 (322)
.+..++..+....++++... ..++.+|||+|||+|.+++..++.|+. |+|+|++|.+++.+++++..+++....
T Consensus 140 AFGTG~HpTT~lcL~~Le~~-~~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~---- 214 (300)
T COG2264 140 AFGTGTHPTTSLCLEALEKL-LKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLV---- 214 (300)
T ss_pred ccCCCCChhHHHHHHHHHHh-hcCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhh----
Confidence 34445556667777777765 357899999999999999999999885 999999999999999999887765211
Q ss_pred CCCceEEcccccC--CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCCCCCccc
Q 020710 204 VMPKFEVKDLESL--DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATR 281 (322)
Q Consensus 204 ~~~~~~~~d~~~~--~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (322)
.....+.... .++||+|+++=. -+.+..+...+.+++++++.+++.- ++.
T Consensus 215 ---~~~~~~~~~~~~~~~~DvIVANIL-----A~vl~~La~~~~~~lkpgg~lIlSG-------------Il~------- 266 (300)
T COG2264 215 ---QAKGFLLLEVPENGPFDVIVANIL-----AEVLVELAPDIKRLLKPGGRLILSG-------------ILE------- 266 (300)
T ss_pred ---hcccccchhhcccCcccEEEehhh-----HHHHHHHHHHHHHHcCCCceEEEEe-------------ehH-------
Confidence 2223333222 469999998642 2225678888888888777776532 110
Q ss_pred cccCCHHHHHHHHHHCCCEEEEEeeee
Q 020710 282 AYLHAEADVERALQKVGWKIRKRGLIT 308 (322)
Q Consensus 282 ~~~~~~~~~~~~l~~aGf~vv~~~~~~ 308 (322)
...+.+.+.+.+.||+++.+....
T Consensus 267 ---~q~~~V~~a~~~~gf~v~~~~~~~ 290 (300)
T COG2264 267 ---DQAESVAEAYEQAGFEVVEVLERE 290 (300)
T ss_pred ---hHHHHHHHHHHhCCCeEeEEEecC
Confidence 025688899999999999876554
|
|
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=6.6e-12 Score=112.09 Aligned_cols=134 Identities=24% Similarity=0.311 Sum_probs=85.7
Q ss_pred CCCeEEEECCCcccchHHHHhc-----CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC---CCC
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQ-----GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL---DGK 219 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~-----~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~ 219 (322)
...+|||+|||+|.++..+++. +++++|+|+|+.|++.|+++... +.|.++|+.++ +++
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~-------------~~~~~~d~~~lp~~~~s 151 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQ-------------VTFCVASSHRLPFADQS 151 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCC-------------CeEEEeecccCCCcCCc
Confidence 4578999999999999998865 24799999999999999876421 27889888775 679
Q ss_pred ccEEEEcccccccCcchHHHHHHHHHhccCCeE-EEEECCChhhHHHHHHhhccCCCCCCccccccCCHHHHHHHHHHCC
Q 020710 220 YDTVVCLDVLIHYPQSKADGMIAHLASLAEKRL-ILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQKVG 298 (322)
Q Consensus 220 fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~-il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG 298 (322)
||+|++... + ..++++++++++|| ++.+.+...+...+. +..+. ... .+.. .. ....|
T Consensus 152 fD~I~~~~~----~-----~~~~e~~rvLkpgG~li~~~p~~~~l~el~---~~~~~---~~~--~~~~-~~---~~~~g 210 (272)
T PRK11088 152 LDAIIRIYA----P-----CKAEELARVVKPGGIVITVTPGPRHLFELK---GLIYD---EVR--LHAP-EA---EQLEG 210 (272)
T ss_pred eeEEEEecC----C-----CCHHHHHhhccCCCEEEEEeCCCcchHHHH---HHhcc---ccc--cccc-ch---hhccC
Confidence 999998653 1 23466777665555 444444432221222 22211 000 0111 11 12369
Q ss_pred CEEEEEeeeecceehhh
Q 020710 299 WKIRKRGLITTQFYFAR 315 (322)
Q Consensus 299 f~vv~~~~~~~~~~f~~ 315 (322)
|++++.+.+...+.+..
T Consensus 211 F~~~~~~~~~~~~~l~~ 227 (272)
T PRK11088 211 FELQHSERLAYPMRLTG 227 (272)
T ss_pred CCeeeEEEEEEEEEeCH
Confidence 99998888877776643
|
|
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.5e-12 Score=99.05 Aligned_cols=106 Identities=15% Similarity=0.044 Sum_probs=80.3
Q ss_pred HHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcc
Q 020710 135 ENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKD 212 (322)
Q Consensus 135 ~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d 212 (322)
..+++.+.. .++.+|||+|||+|.++..+++. +.+|+++|+|+.+++.++++....+..+ +.++..|
T Consensus 9 ~~~~~~~~~---~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~--------~~~~~~~ 77 (124)
T TIGR02469 9 ALTLSKLRL---RPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSN--------IVIVEGD 77 (124)
T ss_pred HHHHHHcCC---CCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCc--------eEEEecc
Confidence 344444432 34679999999999999999987 4689999999999999999887765432 3788888
Q ss_pred ccc----CCCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEE
Q 020710 213 LES----LDGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSF 256 (322)
Q Consensus 213 ~~~----~~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~ 256 (322)
+.. ..++||.|++.....+ ...+++.+.+.+++++.+.+
T Consensus 78 ~~~~~~~~~~~~D~v~~~~~~~~-----~~~~l~~~~~~Lk~gG~li~ 120 (124)
T TIGR02469 78 APEALEDSLPEPDRVFIGGSGGL-----LQEILEAIWRRLRPGGRIVL 120 (124)
T ss_pred ccccChhhcCCCCEEEECCcchh-----HHHHHHHHHHHcCCCCEEEE
Confidence 654 2478999998765432 45889999998877776654
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.7e-12 Score=125.20 Aligned_cols=100 Identities=18% Similarity=0.173 Sum_probs=79.9
Q ss_pred CCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-----CCCc
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-----DGKY 220 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-----~~~f 220 (322)
++.+|||||||+|.++..+++. +.+|+|+|+|+.|++.++++....+.. +.++++|+.++ +++|
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~~---------ie~I~gDa~dLp~~fedeSF 488 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGRS---------WNVIKGDAINLSSSFEKESV 488 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCC---------eEEEEcchHhCccccCCCCE
Confidence 4789999999999999888875 679999999999999999886544322 27788887653 5789
Q ss_pred cEEEEcccccccC-----------cchHHHHHHHHHhccCCeEEEEE
Q 020710 221 DTVVCLDVLIHYP-----------QSKADGMIAHLASLAEKRLILSF 256 (322)
Q Consensus 221 D~V~~~~~l~~~~-----------~~~~~~~l~~l~~~~~~~~il~~ 256 (322)
|+|+++.++||+. ++....+++++.+++++||.+.+
T Consensus 489 DvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII 535 (677)
T PRK06922 489 DTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIII 535 (677)
T ss_pred EEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEE
Confidence 9999999998763 23467899999998877775554
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.7e-12 Score=112.36 Aligned_cols=102 Identities=23% Similarity=0.230 Sum_probs=82.3
Q ss_pred CCCeEEEECCCcccc-hHHHHh-c--CCEEEEEeCCHHHHHHHHHHhHH-hhhccCCCCCCCCCceEEcccccC---CCC
Q 020710 148 KGIAVCDAGCGTGSL-AIPLAK-Q--GAIVSASDISAAMVAEARKKAEE-ELLADNGGEAPVMPKFEVKDLESL---DGK 219 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~-~~~la~-~--~~~v~gvD~s~~~l~~a~~~~~~-~~~~~~~~~~~~~~~~~~~d~~~~---~~~ 219 (322)
++.+|+|||||.|.+ +..++. . +.+++|+|+++++++.|++.+.. .++.+++ +|.++|+.+. .+.
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV-------~F~~~Da~~~~~~l~~ 195 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRM-------FFHTADVMDVTESLKE 195 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCc-------EEEECchhhcccccCC
Confidence 578999999997744 444443 2 56899999999999999999964 6666555 9999998765 378
Q ss_pred ccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEEC
Q 020710 220 YDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFA 257 (322)
Q Consensus 220 fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~ 257 (322)
||+|+|. +++++..+...++++++++.+++|+++.+-
T Consensus 196 FDlVF~~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr 232 (296)
T PLN03075 196 YDVVFLA-ALVGMDKEEKVKVIEHLGKHMAPGALLMLR 232 (296)
T ss_pred cCEEEEe-cccccccccHHHHHHHHHHhcCCCcEEEEe
Confidence 9999999 999996555779999999988888877663
|
|
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.5e-12 Score=106.79 Aligned_cols=154 Identities=19% Similarity=0.288 Sum_probs=104.3
Q ss_pred CCCCeEEEECCCcccchHHHHhc-CC-EEEEEeCCHHHHHHHHHHhHHhhhc-cCCC-----------------------
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQ-GA-IVSASDISAAMVAEARKKAEEELLA-DNGG----------------------- 200 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~-~~-~v~gvD~s~~~l~~a~~~~~~~~~~-~~~~----------------------- 200 (322)
..+..+|||||..|.++..+++. |+ .+.|+||++..|+.|++++...... ..+.
T Consensus 57 f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a 136 (288)
T KOG2899|consen 57 FEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRA 136 (288)
T ss_pred cCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccccc
Confidence 45778999999999999999998 66 4999999999999999987532110 1000
Q ss_pred ----------CCCCCCceEEcccccC-CCCccEEEEccccccc----CcchHHHHHHHHHhccCCeEEEEECCChhh-HH
Q 020710 201 ----------EAPVMPKFEVKDLESL-DGKYDTVVCLDVLIHY----PQSKADGMIAHLASLAEKRLILSFAPKTFY-YD 264 (322)
Q Consensus 201 ----------~~~~~~~~~~~d~~~~-~~~fD~V~~~~~l~~~----~~~~~~~~l~~l~~~~~~~~il~~~~~~~~-~~ 264 (322)
....+..+...|+.++ ...||+|+|..+-.++ -|+.+..+++++.+++.+||++++.|..|- |.
T Consensus 137 ~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEPQpWksY~ 216 (288)
T KOG2899|consen 137 FTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEPQPWKSYK 216 (288)
T ss_pred ccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcCCchHHHH
Confidence 0001112222233333 5789999998765443 377789999999999999999999998763 22
Q ss_pred HHHHhhccCCCCCCccccccCCHHHHHHHHHHC--CCEEEE
Q 020710 265 LLKRVGELFPGPSKATRAYLHAEADVERALQKV--GWKIRK 303 (322)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a--Gf~vv~ 303 (322)
-..+..+.+.. ......+.++.++.++.+. ||+-++
T Consensus 217 kaar~~e~~~~---ny~~i~lkp~~f~~~l~q~~vgle~~e 254 (288)
T KOG2899|consen 217 KAARRSEKLAA---NYFKIFLKPEDFEDWLNQIVVGLESVE 254 (288)
T ss_pred HHHHHHHHhhc---CccceecCHHHHHhhhhhhhhheeeec
Confidence 22233323321 2223356889999999887 676444
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.1e-12 Score=119.13 Aligned_cols=115 Identities=22% Similarity=0.217 Sum_probs=84.7
Q ss_pred HHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcc
Q 020710 135 ENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKD 212 (322)
Q Consensus 135 ~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d 212 (322)
+-+++.+... ...+|||+|||+|.++..+++. +.+|+++|+|+.|++.+++++...+... ..+++|...|
T Consensus 218 rllL~~lp~~---~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~-----~~~v~~~~~D 289 (378)
T PRK15001 218 RFFMQHLPEN---LEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEA-----LDRCEFMINN 289 (378)
T ss_pred HHHHHhCCcc---cCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCccc-----CceEEEEEcc
Confidence 4455666543 3469999999999999999987 5789999999999999999987654321 0123788888
Q ss_pred cccC--CCCccEEEEccccccc---CcchHHHHHHHHHhccCCeEEEEEC
Q 020710 213 LESL--DGKYDTVVCLDVLIHY---PQSKADGMIAHLASLAEKRLILSFA 257 (322)
Q Consensus 213 ~~~~--~~~fD~V~~~~~l~~~---~~~~~~~~l~~l~~~~~~~~il~~~ 257 (322)
..+. +++||+|+|+-.+|.. .+....++++..++.+++||.+.+.
T Consensus 290 ~l~~~~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV 339 (378)
T PRK15001 290 ALSGVEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIV 339 (378)
T ss_pred ccccCCCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEE
Confidence 7543 4589999998777542 3344568899999887766655443
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.37 E-value=4.5e-12 Score=122.06 Aligned_cols=110 Identities=25% Similarity=0.220 Sum_probs=87.0
Q ss_pred HHhcCCCcccchhhhhhcCchhHHHHHHHHhhhc---------------------CCCCCCeEEEECCCcccchHHHHhc
Q 020710 111 KIYGETDDVNRVQLDIRLGHSKTVENTMQMLNDE---------------------GSLKGIAVCDAGCGTGSLAIPLAKQ 169 (322)
Q Consensus 111 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---------------------~~~~~~~VLDvGcG~G~~~~~la~~ 169 (322)
.+|+....+++....+|+.++.+++.+++.+... ...++.+|||+|||+|.++..++..
T Consensus 80 ~F~g~~f~V~~~VLIPRpeTE~Lve~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VLDlG~GsG~iai~la~~ 159 (506)
T PRK01544 80 EFYSREFIVNKHVLIPRSDTEVLVDVVFQCHSRESGNPEKKQLNPCFRGNDISSNCNDKFLNILELGTGSGCIAISLLCE 159 (506)
T ss_pred EEcCcEEEeCCCcccCCCcHHHHHHHHHHHhhhccccccccccccccccccccccccCCCCEEEEccCchhHHHHHHHHH
Confidence 4566667788888899999999999988776420 0113468999999999999998865
Q ss_pred --CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--CCCccEEEEcc
Q 020710 170 --GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL--DGKYDTVVCLD 227 (322)
Q Consensus 170 --~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~fD~V~~~~ 227 (322)
+.+|+++|+|+.+++.|++++...++.+++ .++.+|+.+. .++||+|+|+-
T Consensus 160 ~p~~~v~avDis~~al~~A~~N~~~~~l~~~v-------~~~~~D~~~~~~~~~fDlIvsNP 214 (506)
T PRK01544 160 LPNANVIATDISLDAIEVAKSNAIKYEVTDRI-------QIIHSNWFENIEKQKFDFIVSNP 214 (506)
T ss_pred CCCCeEEEEECCHHHHHHHHHHHHHcCCccce-------eeeecchhhhCcCCCccEEEECC
Confidence 679999999999999999998877665444 8889997543 46899999964
|
|
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.9e-11 Score=98.03 Aligned_cols=139 Identities=27% Similarity=0.293 Sum_probs=96.0
Q ss_pred HHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCC-EEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEc
Q 020710 133 TVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGA-IVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVK 211 (322)
Q Consensus 133 ~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (322)
....++......++..+.+|+|+|||||.++...+-.|+ +|+|+|+++++++.++++..+.... ++|++.
T Consensus 30 ~Aa~il~~a~~~g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~g~---------v~f~~~ 100 (198)
T COG2263 30 LAAYILWVAYLRGDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELLGD---------VEFVVA 100 (198)
T ss_pred HHHHHHHHHHHcCCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhCCc---------eEEEEc
Confidence 345555555455567788999999999999999999985 6999999999999999999883332 299999
Q ss_pred ccccCCCCccEEEEcccccccCc-chHHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCCCCCccccccCCHHHH
Q 020710 212 DLESLDGKYDTVVCLDVLIHYPQ-SKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADV 290 (322)
Q Consensus 212 d~~~~~~~fD~V~~~~~l~~~~~-~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (322)
|+.+..+.||+|+++--+--.-. ... .++....++. ..+.++.. .-+.+.+
T Consensus 101 dv~~~~~~~dtvimNPPFG~~~rhaDr-~Fl~~Ale~s--~vVYsiH~-------------------------a~~~~f~ 152 (198)
T COG2263 101 DVSDFRGKFDTVIMNPPFGSQRRHADR-PFLLKALEIS--DVVYSIHK-------------------------AGSRDFV 152 (198)
T ss_pred chhhcCCccceEEECCCCccccccCCH-HHHHHHHHhh--heEEEeec-------------------------cccHHHH
Confidence 99999999999998764432211 001 2332222211 22222211 0146788
Q ss_pred HHHHHHCCCEEEEEeeee
Q 020710 291 ERALQKVGWKIRKRGLIT 308 (322)
Q Consensus 291 ~~~l~~aGf~vv~~~~~~ 308 (322)
++...+.|+.+...+...
T Consensus 153 ~~~~~~~G~~v~~~~~~~ 170 (198)
T COG2263 153 EKFAADLGGTVTHIERAR 170 (198)
T ss_pred HHHHHhcCCeEEEEEEEE
Confidence 889999998887765443
|
|
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.37 E-value=6.2e-12 Score=104.31 Aligned_cols=109 Identities=28% Similarity=0.346 Sum_probs=84.1
Q ss_pred HHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCC--EEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcc
Q 020710 135 ENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGA--IVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKD 212 (322)
Q Consensus 135 ~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d 212 (322)
.-+++.+... +..+|||+|||+|..+..+++.+. +|+++|+|+.+++.+++++...+..+ + +++..|
T Consensus 21 ~lL~~~l~~~---~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~-v-------~~~~~d 89 (170)
T PF05175_consen 21 RLLLDNLPKH---KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLEN-V-------EVVQSD 89 (170)
T ss_dssp HHHHHHHHHH---TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTT-E-------EEEESS
T ss_pred HHHHHHHhhc---cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccc-c-------cccccc
Confidence 4555666654 478999999999999999999854 59999999999999999999887653 2 888999
Q ss_pred cccC--CCCccEEEEcccccccCc---chHHHHHHHHHhccCCeEEE
Q 020710 213 LESL--DGKYDTVVCLDVLIHYPQ---SKADGMIAHLASLAEKRLIL 254 (322)
Q Consensus 213 ~~~~--~~~fD~V~~~~~l~~~~~---~~~~~~l~~l~~~~~~~~il 254 (322)
+.+. +++||+|+|+--++.-.+ .....+++...+.++++|.+
T Consensus 90 ~~~~~~~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l 136 (170)
T PF05175_consen 90 LFEALPDGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRL 136 (170)
T ss_dssp TTTTCCTTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEE
T ss_pred ccccccccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEE
Confidence 7654 589999999987654443 23578888888888777655
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.6e-11 Score=103.14 Aligned_cols=122 Identities=20% Similarity=0.244 Sum_probs=89.0
Q ss_pred CCCCCeEEEECCCcccchHHHHhc---CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC----CC
Q 020710 146 SLKGIAVCDAGCGTGSLAIPLAKQ---GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL----DG 218 (322)
Q Consensus 146 ~~~~~~VLDvGcG~G~~~~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~ 218 (322)
..++.+|||+|||+|.++..+++. +.+|+++|+++.|++.+++++...++..++ .++.+|+.+. .+
T Consensus 38 ~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v-------~~~~~d~~~~l~~~~~ 110 (198)
T PRK00377 38 LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNI-------VLIKGEAPEILFTINE 110 (198)
T ss_pred CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCe-------EEEEechhhhHhhcCC
Confidence 346889999999999999988764 468999999999999999998877643323 7888888653 47
Q ss_pred CccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCCCCCccccccCCHHHHHHHHHHCC
Q 020710 219 KYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQKVG 298 (322)
Q Consensus 219 ~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG 298 (322)
.||.|++... . .....+++.+.+.+++++.+.+...+. .+.+++.+.+++.|
T Consensus 111 ~~D~V~~~~~---~--~~~~~~l~~~~~~LkpgG~lv~~~~~~-----------------------~~~~~~~~~l~~~g 162 (198)
T PRK00377 111 KFDRIFIGGG---S--EKLKEIISASWEIIKKGGRIVIDAILL-----------------------ETVNNALSALENIG 162 (198)
T ss_pred CCCEEEECCC---c--ccHHHHHHHHHHHcCCCcEEEEEeecH-----------------------HHHHHHHHHHHHcC
Confidence 8999998542 2 225688888888777766554422111 12357778888889
Q ss_pred CEEE
Q 020710 299 WKIR 302 (322)
Q Consensus 299 f~vv 302 (322)
|+..
T Consensus 163 ~~~~ 166 (198)
T PRK00377 163 FNLE 166 (198)
T ss_pred CCeE
Confidence 8543
|
|
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=9.7e-12 Score=111.16 Aligned_cols=146 Identities=25% Similarity=0.241 Sum_probs=98.8
Q ss_pred hhhhcCchhHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCC
Q 020710 124 LDIRLGHSKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGE 201 (322)
Q Consensus 124 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~ 201 (322)
...+...+.+++.++..+.. .++.+|||+|||+|.++..++.. ..+|+|+|+|+.+++.+++++. .....
T Consensus 87 lipr~~te~l~~~~~~~~~~---~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~-~~~~~---- 158 (275)
T PRK09328 87 LIPRPETEELVEWALEALLL---KEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK-HGLGA---- 158 (275)
T ss_pred eeCCCCcHHHHHHHHHhccc---cCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-hCCCC----
Confidence 33444455555555544332 25679999999999999999987 4789999999999999999887 22222
Q ss_pred CCCCCceEEcccccC--CCCccEEEEcccccc------cCc------------------chHHHHHHHHHhccCCeEEEE
Q 020710 202 APVMPKFEVKDLESL--DGKYDTVVCLDVLIH------YPQ------------------SKADGMIAHLASLAEKRLILS 255 (322)
Q Consensus 202 ~~~~~~~~~~d~~~~--~~~fD~V~~~~~l~~------~~~------------------~~~~~~l~~l~~~~~~~~il~ 255 (322)
++.++.+|+.+. +++||+|+++....- +.+ +....+++++.++++++|.+.
T Consensus 159 ---~i~~~~~d~~~~~~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~ 235 (275)
T PRK09328 159 ---RVEFLQGDWFEPLPGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLL 235 (275)
T ss_pred ---cEEEEEccccCcCCCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEE
Confidence 238899998654 478999999643211 111 112466777777777777665
Q ss_pred ECCChhhHHHHHHhhccCCCCCCccccccCCHHHHHHHHHHCCCEEEEE
Q 020710 256 FAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQKVGWKIRKR 304 (322)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~vv~~ 304 (322)
+... +...+++.+++.+.||..++.
T Consensus 236 ~e~g------------------------~~~~~~~~~~l~~~gf~~v~~ 260 (275)
T PRK09328 236 LEIG------------------------YDQGEAVRALLAAAGFADVET 260 (275)
T ss_pred EEEC------------------------chHHHHHHHHHHhCCCceeEE
Confidence 5221 112457889999999985554
|
|
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.2e-11 Score=111.98 Aligned_cols=123 Identities=25% Similarity=0.253 Sum_probs=85.7
Q ss_pred hhhhcCchhHHHHHHH-HhhhcCCCCCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCC
Q 020710 124 LDIRLGHSKTVENTMQ-MLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGG 200 (322)
Q Consensus 124 ~~~~~~~~~~~~~~~~-~l~~~~~~~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~ 200 (322)
..++...+..+...+. ++... +..+|||+|||+|.++..++.. +.+|+++|+|+.+++.|++++...+..+++
T Consensus 111 lipr~~te~lv~~~l~~~~~~~---~~~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i- 186 (307)
T PRK11805 111 LVPRSPIAELIEDGFAPWLEDP---PVTRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRV- 186 (307)
T ss_pred cCCCCchHHHHHHHHHHHhccC---CCCEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcE-
Confidence 3344445555555543 33322 2368999999999999999987 578999999999999999999887765444
Q ss_pred CCCCCCceEEcccccC--CCCccEEEEcccc-------------cccCc----------chHHHHHHHHHhccCCeEEEE
Q 020710 201 EAPVMPKFEVKDLESL--DGKYDTVVCLDVL-------------IHYPQ----------SKADGMIAHLASLAEKRLILS 255 (322)
Q Consensus 201 ~~~~~~~~~~~d~~~~--~~~fD~V~~~~~l-------------~~~~~----------~~~~~~l~~l~~~~~~~~il~ 255 (322)
+++++|+.+. +++||+|+++--. +|-|. +....+++.+.+.+++||.+.
T Consensus 187 ------~~~~~D~~~~l~~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~ 260 (307)
T PRK11805 187 ------TLIESDLFAALPGRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLV 260 (307)
T ss_pred ------EEEECchhhhCCCCCccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEE
Confidence 8999997543 4589999997311 12221 113466777777777776665
Q ss_pred E
Q 020710 256 F 256 (322)
Q Consensus 256 ~ 256 (322)
+
T Consensus 261 ~ 261 (307)
T PRK11805 261 V 261 (307)
T ss_pred E
Confidence 5
|
|
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.3e-11 Score=117.57 Aligned_cols=116 Identities=31% Similarity=0.421 Sum_probs=86.8
Q ss_pred hhHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEE
Q 020710 131 SKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEV 210 (322)
Q Consensus 131 ~~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~ 210 (322)
+.+++.+++++.. .++.+|||+|||+|.++..+++.+.+|+|+|+|+.|++.|++++...+..+ ++|++
T Consensus 283 e~l~~~vl~~l~~---~~~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~al~~A~~n~~~~~~~~--------v~~~~ 351 (443)
T PRK13168 283 QKMVARALEWLDP---QPGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERARENARRNGLDN--------VTFYH 351 (443)
T ss_pred HHHHHHHHHHhcC---CCCCEEEEEeccCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCc--------eEEEE
Confidence 3455666666643 356899999999999999999998899999999999999999988766532 38999
Q ss_pred cccccC-------CCCccEEEEcccccccCcchHHHHHHHHHhccC-CeEEEEECCChhh
Q 020710 211 KDLESL-------DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAE-KRLILSFAPKTFY 262 (322)
Q Consensus 211 ~d~~~~-------~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~-~~~il~~~~~~~~ 262 (322)
+|+.+. +++||+|++ +.|.......++.+.++.. ..++++|+|.++.
T Consensus 352 ~d~~~~l~~~~~~~~~fD~Vi~-----dPPr~g~~~~~~~l~~~~~~~ivyvSCnp~tla 406 (443)
T PRK13168 352 ANLEEDFTDQPWALGGFDKVLL-----DPPRAGAAEVMQALAKLGPKRIVYVSCNPATLA 406 (443)
T ss_pred eChHHhhhhhhhhcCCCCEEEE-----CcCCcChHHHHHHHHhcCCCeEEEEEeChHHhh
Confidence 998642 367999986 4444434566677777543 4446778777754
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.2e-11 Score=106.60 Aligned_cols=90 Identities=20% Similarity=0.188 Sum_probs=71.9
Q ss_pred HHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcC---CEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceE
Q 020710 133 TVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQG---AIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFE 209 (322)
Q Consensus 133 ~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~---~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~ 209 (322)
.+..+++.+.. .++.+|||||||+|.++..+++.. .+|+++|+++.+++.|++++...+..+ ++++
T Consensus 65 ~~~~~~~~l~~---~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~--------v~~~ 133 (215)
T TIGR00080 65 MVAMMTELLEL---KPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDN--------VIVI 133 (215)
T ss_pred HHHHHHHHhCC---CCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCC--------eEEE
Confidence 44566666654 367899999999999999998873 359999999999999999998876532 3899
Q ss_pred EcccccC---CCCccEEEEcccccccC
Q 020710 210 VKDLESL---DGKYDTVVCLDVLIHYP 233 (322)
Q Consensus 210 ~~d~~~~---~~~fD~V~~~~~l~~~~ 233 (322)
++|+.+. .++||+|++.....+++
T Consensus 134 ~~d~~~~~~~~~~fD~Ii~~~~~~~~~ 160 (215)
T TIGR00080 134 VGDGTQGWEPLAPYDRIYVTAAGPKIP 160 (215)
T ss_pred ECCcccCCcccCCCCEEEEcCCccccc
Confidence 9998653 46899999987766654
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=2e-11 Score=105.48 Aligned_cols=144 Identities=17% Similarity=0.084 Sum_probs=92.9
Q ss_pred HHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEc
Q 020710 134 VENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVK 211 (322)
Q Consensus 134 ~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (322)
...++..+...+..++.+|||+|||+|.++..+++. ..+|+|+|+++.|++.+.+++.+. . ++.++.+
T Consensus 58 ~~~ll~~~~~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~--~--------nv~~i~~ 127 (226)
T PRK04266 58 AAAILKGLKNFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER--K--------NIIPILA 127 (226)
T ss_pred HHHHHhhHhhCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc--C--------CcEEEEC
Confidence 344444332233457889999999999999999987 358999999999999887776542 1 1378888
Q ss_pred ccccC------CCCccEEEEcccccccCcc-hHHHHHHHHHhccCCeEEEEE-CCChhhHHHHHHhhccCCCCCCccccc
Q 020710 212 DLESL------DGKYDTVVCLDVLIHYPQS-KADGMIAHLASLAEKRLILSF-APKTFYYDLLKRVGELFPGPSKATRAY 283 (322)
Q Consensus 212 d~~~~------~~~fD~V~~~~~l~~~~~~-~~~~~l~~l~~~~~~~~il~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (322)
|+... ..+||+|++. ++++ ....+++++++.+++||.+.+ .+... .++- .....
T Consensus 128 D~~~~~~~~~l~~~~D~i~~d-----~~~p~~~~~~L~~~~r~LKpGG~lvI~v~~~~--------~d~~----~~~~~- 189 (226)
T PRK04266 128 DARKPERYAHVVEKVDVIYQD-----VAQPNQAEIAIDNAEFFLKDGGYLLLAIKARS--------IDVT----KDPKE- 189 (226)
T ss_pred CCCCcchhhhccccCCEEEEC-----CCChhHHHHHHHHHHHhcCCCcEEEEEEeccc--------ccCc----CCHHH-
Confidence 87542 4679999853 3332 224568899988776665544 22110 0000 00001
Q ss_pred cCCHHHHHHHHHHCCCEEEEEeee
Q 020710 284 LHAEADVERALQKVGWKIRKRGLI 307 (322)
Q Consensus 284 ~~~~~~~~~~l~~aGf~vv~~~~~ 307 (322)
+ .++..++++++||++++....
T Consensus 190 -~-~~~~~~~l~~aGF~~i~~~~l 211 (226)
T PRK04266 190 -I-FKEEIRKLEEGGFEILEVVDL 211 (226)
T ss_pred -H-HHHHHHHHHHcCCeEEEEEcC
Confidence 1 134559999999999886544
|
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.6e-11 Score=108.11 Aligned_cols=104 Identities=34% Similarity=0.320 Sum_probs=80.9
Q ss_pred hcCCCcccchhhhhhcCchhHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcC--CEEEEEeCCHHHHHHHHHHh
Q 020710 113 YGETDDVNRVQLDIRLGHSKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQG--AIVSASDISAAMVAEARKKA 190 (322)
Q Consensus 113 y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~--~~v~gvD~s~~~l~~a~~~~ 190 (322)
++....+++....+++..+.+++.++..+... .. +|||+|||+|..+..++..+ ++|+|+|+|+.+++.|++++
T Consensus 79 ~gl~~~v~~~vliPr~dTe~Lve~~l~~~~~~---~~-~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na 154 (280)
T COG2890 79 GGLRFKVDEGVLIPRPDTELLVEAALALLLQL---DK-RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENA 154 (280)
T ss_pred cceeeeeCCCceecCCchHHHHHHHHHhhhhc---CC-cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHH
Confidence 33344566667778888888888877555544 12 89999999999999999985 48999999999999999999
Q ss_pred HHhhhccCCCCCCCCCceEEcccccC-CCCccEEEEccc
Q 020710 191 EEELLADNGGEAPVMPKFEVKDLESL-DGKYDTVVCLDV 228 (322)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~fD~V~~~~~ 228 (322)
...++ .++ .++..|+.+. .++||+|+++--
T Consensus 155 ~~~~l-~~~-------~~~~~dlf~~~~~~fDlIVsNPP 185 (280)
T COG2890 155 ERNGL-VRV-------LVVQSDLFEPLRGKFDLIVSNPP 185 (280)
T ss_pred HHcCC-ccE-------EEEeeecccccCCceeEEEeCCC
Confidence 98876 322 5566686554 779999999864
|
|
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=8e-12 Score=114.48 Aligned_cols=110 Identities=22% Similarity=0.270 Sum_probs=84.1
Q ss_pred HHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcc
Q 020710 135 ENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKD 212 (322)
Q Consensus 135 ~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d 212 (322)
+.+++.+... ...+|||+|||+|.++..+++. +.+|+++|+|+.|++.+++++...+... +++..|
T Consensus 186 ~lLl~~l~~~---~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~---------~~~~~D 253 (342)
T PRK09489 186 QLLLSTLTPH---TKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEG---------EVFASN 253 (342)
T ss_pred HHHHHhcccc---CCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCC---------EEEEcc
Confidence 3445555432 3568999999999999999987 3589999999999999999988776543 677778
Q ss_pred ccc-CCCCccEEEEcccccccCc---chHHHHHHHHHhccCCeEEEEE
Q 020710 213 LES-LDGKYDTVVCLDVLIHYPQ---SKADGMIAHLASLAEKRLILSF 256 (322)
Q Consensus 213 ~~~-~~~~fD~V~~~~~l~~~~~---~~~~~~l~~l~~~~~~~~il~~ 256 (322)
... .+++||+|+|+..+|+... .....+++.+.+.+++||.+.+
T Consensus 254 ~~~~~~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~i 301 (342)
T PRK09489 254 VFSDIKGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRI 301 (342)
T ss_pred cccccCCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEE
Confidence 654 3788999999998876332 2356889999998766665543
|
|
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.6e-12 Score=109.25 Aligned_cols=144 Identities=13% Similarity=0.127 Sum_probs=97.1
Q ss_pred CCCeEEEECCCcccchHHHHhc-CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC---CCCccEE
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQ-GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL---DGKYDTV 223 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~fD~V 223 (322)
...+.||.|+|.|+.+..++-. .-+|.-||+++..++.|++.+....... .++++..+++. .++||+|
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v--------~~~~~~gLQ~f~P~~~~YDlI 126 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNPRV--------GEFYCVGLQDFTPEEGKYDLI 126 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGCCE--------EEEEES-GGG----TT-EEEE
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCCCc--------ceEEecCHhhccCCCCcEeEE
Confidence 4678999999999999877655 5679999999999999998765521110 17888888776 4799999
Q ss_pred EEcccccccCcchHHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCCCCCccccccCCHHHHHHHHHHCCCEEEE
Q 020710 224 VCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQKVGWKIRK 303 (322)
Q Consensus 224 ~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~vv~ 303 (322)
++-.++.|++|+.+..+|++++..+.++|+|.+-.+....+ ...+.... ...-.+.+.+.+++++||++++.
T Consensus 127 W~QW~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~-----~~~~D~~D---sSvTRs~~~~~~lF~~AGl~~v~ 198 (218)
T PF05891_consen 127 WIQWCLGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSG-----FDEFDEED---SSVTRSDEHFRELFKQAGLRLVK 198 (218)
T ss_dssp EEES-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSS-----EEEEETTT---TEEEEEHHHHHHHHHHCT-EEEE
T ss_pred EehHhhccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCC-----CcccCCcc---CeeecCHHHHHHHHHHcCCEEEE
Confidence 99999999999999999999999887777775532211100 01221111 11123678999999999999998
Q ss_pred Eeee
Q 020710 304 RGLI 307 (322)
Q Consensus 304 ~~~~ 307 (322)
.+..
T Consensus 199 ~~~Q 202 (218)
T PF05891_consen 199 EEKQ 202 (218)
T ss_dssp EEE-
T ss_pred eccc
Confidence 7655
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.3e-11 Score=106.03 Aligned_cols=91 Identities=19% Similarity=0.196 Sum_probs=72.7
Q ss_pred hHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc---CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCce
Q 020710 132 KTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ---GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKF 208 (322)
Q Consensus 132 ~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~ 208 (322)
.+...+++.+.. .++.+|||||||+|+++..+++. +.+|+++|+++++++.+++++...+..+ +++
T Consensus 63 ~~~~~~~~~l~~---~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~--------v~~ 131 (212)
T PRK13942 63 HMVAIMCELLDL---KEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDN--------VEV 131 (212)
T ss_pred HHHHHHHHHcCC---CCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC--------eEE
Confidence 445566666653 36889999999999999988876 3689999999999999999998766432 489
Q ss_pred EEcccccC---CCCccEEEEcccccccC
Q 020710 209 EVKDLESL---DGKYDTVVCLDVLIHYP 233 (322)
Q Consensus 209 ~~~d~~~~---~~~fD~V~~~~~l~~~~ 233 (322)
+++|+... .+.||+|++...+.+++
T Consensus 132 ~~gd~~~~~~~~~~fD~I~~~~~~~~~~ 159 (212)
T PRK13942 132 IVGDGTLGYEENAPYDRIYVTAAGPDIP 159 (212)
T ss_pred EECCcccCCCcCCCcCEEEECCCcccch
Confidence 99998653 57899999988776654
|
|
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=99.33 E-value=4.8e-12 Score=98.08 Aligned_cols=101 Identities=29% Similarity=0.385 Sum_probs=80.4
Q ss_pred CCeEEEECCCcccchHHHHhcC-CEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-----CCCccE
Q 020710 149 GIAVCDAGCGTGSLAIPLAKQG-AIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-----DGKYDT 222 (322)
Q Consensus 149 ~~~VLDvGcG~G~~~~~la~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-----~~~fD~ 222 (322)
+.+|||+|||+|.++..+++.+ .+++|+|+++..++.+++++...+...++ +++++|+.+. +++||+
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~-------~~~~~D~~~~~~~~~~~~~D~ 73 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRV-------EVIVGDARDLPEPLPDGKFDL 73 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTE-------EEEESHHHHHHHTCTTT-EEE
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceE-------EEEECchhhchhhccCceeEE
Confidence 4589999999999999999998 89999999999999999999988775544 8999998654 689999
Q ss_pred EEEcccccccCc------chHHHHHHHHHhccCCeEEEEE
Q 020710 223 VVCLDVLIHYPQ------SKADGMIAHLASLAEKRLILSF 256 (322)
Q Consensus 223 V~~~~~l~~~~~------~~~~~~l~~l~~~~~~~~il~~ 256 (322)
|+++--+..... .....+++++.++++++|++.+
T Consensus 74 Iv~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~ 113 (117)
T PF13659_consen 74 IVTNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVF 113 (117)
T ss_dssp EEE--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEE
T ss_pred EEECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEE
Confidence 999877654321 1246789999998887776654
|
... |
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.7e-11 Score=103.89 Aligned_cols=101 Identities=22% Similarity=0.242 Sum_probs=77.5
Q ss_pred CCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC------CCCc
Q 020710 149 GIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL------DGKY 220 (322)
Q Consensus 149 ~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~------~~~f 220 (322)
..+|||||||+|.++..+++. ..+|+|+|+++.|++.|+++....+..+ +.++++|+.++ ++.+
T Consensus 17 ~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~n--------i~~i~~d~~~~~~~~~~~~~~ 88 (194)
T TIGR00091 17 APLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKN--------LHVLCGDANELLDKFFPDGSL 88 (194)
T ss_pred CceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCC--------EEEEccCHHHHHHhhCCCCce
Confidence 568999999999999999987 5689999999999999999887765532 48999998642 4689
Q ss_pred cEEEEcccccccCcch------HHHHHHHHHhccCCeEEEEEC
Q 020710 221 DTVVCLDVLIHYPQSK------ADGMIAHLASLAEKRLILSFA 257 (322)
Q Consensus 221 D~V~~~~~l~~~~~~~------~~~~l~~l~~~~~~~~il~~~ 257 (322)
|.|+++....+..... ...+++.+++++++||.+.+.
T Consensus 89 d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~ 131 (194)
T TIGR00091 89 SKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFK 131 (194)
T ss_pred eEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEE
Confidence 9999765443322110 147899999988777766553
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=99.31 E-value=2e-11 Score=111.88 Aligned_cols=123 Identities=24% Similarity=0.209 Sum_probs=91.7
Q ss_pred CCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC---CCCccEE
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL---DGKYDTV 223 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~fD~V 223 (322)
.++.+|||+|||+|.++..++..+.+++|+|+++.|++.+++++...+..+ +.+.++|+.++ +++||+|
T Consensus 181 ~~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl~~~g~~~--------i~~~~~D~~~l~~~~~~~D~I 252 (329)
T TIGR01177 181 TEGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLEHYGIED--------FFVKRGDATKLPLSSESVDAI 252 (329)
T ss_pred CCcCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHHHHhCCCC--------CeEEecchhcCCcccCCCCEE
Confidence 467899999999999998888889999999999999999999988776654 27889998776 5789999
Q ss_pred EEcccccc---c----CcchHHHHHHHHHhccCCeEEEEE-CCChhhHHHHHHhhccCCCCCCccccccCCHHHHHHHHH
Q 020710 224 VCLDVLIH---Y----PQSKADGMIAHLASLAEKRLILSF-APKTFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQ 295 (322)
Q Consensus 224 ~~~~~l~~---~----~~~~~~~~l~~l~~~~~~~~il~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 295 (322)
++...+.. . ..+....+++++.+.+++||.+.+ .+. ..++.++++
T Consensus 253 v~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~---------------------------~~~~~~~~~ 305 (329)
T TIGR01177 253 ATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPT---------------------------RIDLESLAE 305 (329)
T ss_pred EECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcC---------------------------CCCHHHHHh
Confidence 99643211 1 112246889999988766654433 111 125667889
Q ss_pred HCCCEEEEEe
Q 020710 296 KVGWKIRKRG 305 (322)
Q Consensus 296 ~aGf~vv~~~ 305 (322)
++|| ++...
T Consensus 306 ~~g~-i~~~~ 314 (329)
T TIGR01177 306 DAFR-VVKRF 314 (329)
T ss_pred hcCc-chhee
Confidence 9999 76643
|
This family is found exclusively in the Archaea. |
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.3e-11 Score=108.07 Aligned_cols=76 Identities=12% Similarity=0.184 Sum_probs=63.3
Q ss_pred CCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--CCCccEE
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL--DGKYDTV 223 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~fD~V 223 (322)
...+|||+|||+|.++..++.+ +.+|+++|+|+.|++.++++.. + ++++++|+.+. +.+||+|
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~------~-------v~~v~~D~~e~~~~~kFDlI 130 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLP------E-------AEWITSDVFEFESNEKFDVV 130 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCc------C-------CEEEECchhhhcccCCCcEE
Confidence 4579999999999999888775 5689999999999999987642 1 28899998875 5789999
Q ss_pred EEcccccccCcch
Q 020710 224 VCLDVLIHYPQSK 236 (322)
Q Consensus 224 ~~~~~l~~~~~~~ 236 (322)
+++..+.|.+...
T Consensus 131 IsNPPF~~l~~~d 143 (279)
T PHA03411 131 ISNPPFGKINTTD 143 (279)
T ss_pred EEcCCccccCchh
Confidence 9999998876543
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.3e-11 Score=106.11 Aligned_cols=142 Identities=19% Similarity=0.192 Sum_probs=95.3
Q ss_pred hhcCchhHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCC
Q 020710 126 IRLGHSKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAP 203 (322)
Q Consensus 126 ~~~~~~~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~ 203 (322)
.+...+.+++.++.++... ..+.+|||+|||+|.++..+++. +.+|+++|+|+.+++.+++++...+.
T Consensus 66 pr~~Te~Lv~~~l~~~~~~--~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~-------- 135 (251)
T TIGR03704 66 PRRRTEFLVDEAAALARPR--SGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAGG-------- 135 (251)
T ss_pred CCccHHHHHHHHHHhhccc--CCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC--------
Confidence 3444556666666655432 13458999999999999999876 56899999999999999999876542
Q ss_pred CCCceEEcccccC-----CCCccEEEEccccc------ccCcc------------------hHHHHHHHHHhccCCeEEE
Q 020710 204 VMPKFEVKDLESL-----DGKYDTVVCLDVLI------HYPQS------------------KADGMIAHLASLAEKRLIL 254 (322)
Q Consensus 204 ~~~~~~~~d~~~~-----~~~fD~V~~~~~l~------~~~~~------------------~~~~~l~~l~~~~~~~~il 254 (322)
+|+++|+.+. .++||+|+++--.. .++++ .+..+++.+.++++++|.+
T Consensus 136 ---~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l 212 (251)
T TIGR03704 136 ---TVHEGDLYDALPTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHL 212 (251)
T ss_pred ---EEEEeechhhcchhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEE
Confidence 6888887653 36799999975432 11111 0235566666666665555
Q ss_pred EECCChhhHHHHHHhhccCCCCCCccccccCCHHHHHHHHHHCCCEEEEE
Q 020710 255 SFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQKVGWKIRKR 304 (322)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~vv~~ 304 (322)
.+.... -..+++.+++++.||+....
T Consensus 213 ~l~~~~------------------------~~~~~v~~~l~~~g~~~~~~ 238 (251)
T TIGR03704 213 LVETSE------------------------RQAPLAVEAFARAGLIARVA 238 (251)
T ss_pred EEEECc------------------------chHHHHHHHHHHCCCCceee
Confidence 442211 12457888888999875543
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.4e-11 Score=103.52 Aligned_cols=91 Identities=19% Similarity=0.137 Sum_probs=72.0
Q ss_pred hHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEc
Q 020710 132 KTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVK 211 (322)
Q Consensus 132 ~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (322)
.....+++.+.. .++.+|||||||+|.++..+++.+.+|+++|+++.+++.+++++...+..+ +++..+
T Consensus 65 ~~~~~l~~~l~~---~~~~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~--------v~~~~~ 133 (212)
T PRK00312 65 YMVARMTELLEL---KPGDRVLEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRLKQLGLHN--------VSVRHG 133 (212)
T ss_pred HHHHHHHHhcCC---CCCCEEEEECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHHHHHHCCCCc--------eEEEEC
Confidence 344555555543 367899999999999999888887789999999999999999998765543 388999
Q ss_pred ccccC---CCCccEEEEcccccccC
Q 020710 212 DLESL---DGKYDTVVCLDVLIHYP 233 (322)
Q Consensus 212 d~~~~---~~~fD~V~~~~~l~~~~ 233 (322)
|..+. .++||+|++...+++++
T Consensus 134 d~~~~~~~~~~fD~I~~~~~~~~~~ 158 (212)
T PRK00312 134 DGWKGWPAYAPFDRILVTAAAPEIP 158 (212)
T ss_pred CcccCCCcCCCcCEEEEccCchhhh
Confidence 87553 47899999988776654
|
|
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.26 E-value=6.1e-11 Score=108.01 Aligned_cols=114 Identities=21% Similarity=0.236 Sum_probs=82.7
Q ss_pred HHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcc
Q 020710 133 TVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKD 212 (322)
Q Consensus 133 ~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d 212 (322)
+++.+.+++... ++.+|||+|||+|.++..+++.+.+|+|+|+|+.|++.|++++...++.+ ++|+++|
T Consensus 161 l~~~v~~~l~~~---~~~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~av~~A~~n~~~~~l~~--------v~~~~~D 229 (315)
T PRK03522 161 LYATARDWVREL---PPRSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAIACAKQSAAELGLTN--------VQFQALD 229 (315)
T ss_pred HHHHHHHHHHhc---CCCEEEEccCCCCHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCc--------eEEEEcC
Confidence 444455555432 46899999999999999999999999999999999999999998776632 3899999
Q ss_pred cccC----CCCccEEEEcccccccCcchH-HHHHHHHHhccC-CeEEEEECCChhh
Q 020710 213 LESL----DGKYDTVVCLDVLIHYPQSKA-DGMIAHLASLAE-KRLILSFAPKTFY 262 (322)
Q Consensus 213 ~~~~----~~~fD~V~~~~~l~~~~~~~~-~~~l~~l~~~~~-~~~il~~~~~~~~ 262 (322)
+.+. .+.||+|++. .|...+ ..+++.+.+... .-++++|.|.++.
T Consensus 230 ~~~~~~~~~~~~D~Vv~d-----PPr~G~~~~~~~~l~~~~~~~ivyvsc~p~t~~ 280 (315)
T PRK03522 230 STQFATAQGEVPDLVLVN-----PPRRGIGKELCDYLSQMAPRFILYSSCNAQTMA 280 (315)
T ss_pred HHHHHHhcCCCCeEEEEC-----CCCCCccHHHHHHHHHcCCCeEEEEECCcccch
Confidence 8764 3579999975 333222 345555555433 3345567776654
|
|
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.26 E-value=8.8e-11 Score=101.34 Aligned_cols=103 Identities=19% Similarity=0.289 Sum_probs=82.6
Q ss_pred CCCeEEEECCCcccchHHHHhc-C-CEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-----CCCc
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQ-G-AIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-----DGKY 220 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~-~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-----~~~f 220 (322)
...+|||+|||+|..+..++.+ . +++++||+++.|.+.|++..+.+.+..|+ .++++|+.+. ..+|
T Consensus 44 ~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri-------~v~~~Di~~~~~~~~~~~f 116 (248)
T COG4123 44 KKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERI-------QVIEADIKEFLKALVFASF 116 (248)
T ss_pred cCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhce-------eEehhhHHHhhhccccccc
Confidence 4789999999999999999988 3 78999999999999999999998888776 9999999876 3569
Q ss_pred cEEEEcccccccCcc----------------hHHHHHHHHHhccCCeEEEEEC
Q 020710 221 DTVVCLDVLIHYPQS----------------KADGMIAHLASLAEKRLILSFA 257 (322)
Q Consensus 221 D~V~~~~~l~~~~~~----------------~~~~~l~~l~~~~~~~~il~~~ 257 (322)
|+|+|+--+.-.... .++++++...++++++|.+.+.
T Consensus 117 D~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V 169 (248)
T COG4123 117 DLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFV 169 (248)
T ss_pred CEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEE
Confidence 999998654322221 2567777777777666655543
|
|
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=99.25 E-value=8.8e-11 Score=98.29 Aligned_cols=144 Identities=19% Similarity=0.224 Sum_probs=102.1
Q ss_pred eEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-----------C
Q 020710 151 AVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-----------D 217 (322)
Q Consensus 151 ~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-----------~ 217 (322)
+|||||||||..+.++++. ..+..-.|+++..+...+....+.+..+-. .-+..|+... .
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~-------~P~~lDv~~~~w~~~~~~~~~~ 100 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVR-------PPLALDVSAPPWPWELPAPLSP 100 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccC-------CCeEeecCCCCCccccccccCC
Confidence 5999999999999999998 678889999999988888887777665522 3445565443 3
Q ss_pred CCccEEEEcccccccCcchHHHHHHHHHhccCCeEEE-EECCCh----hhHHHHHHhhccCCCCCCccccccCCHHHHHH
Q 020710 218 GKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLIL-SFAPKT----FYYDLLKRVGELFPGPSKATRAYLHAEADVER 292 (322)
Q Consensus 218 ~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il-~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (322)
+.||.|+|.+++|-+|.+..+.+++...++++++|++ .+.|-. +..+-...+...+... ...--+.+.+++.+
T Consensus 101 ~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~r--dp~~GiRD~e~v~~ 178 (204)
T PF06080_consen 101 ESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSR--DPEWGIRDIEDVEA 178 (204)
T ss_pred CCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcC--CCCcCccCHHHHHH
Confidence 4899999999998888888899999999987665544 443311 1111112222222111 11122568899999
Q ss_pred HHHHCCCEEEE
Q 020710 293 ALQKVGWKIRK 303 (322)
Q Consensus 293 ~l~~aGf~vv~ 303 (322)
+..++||+.++
T Consensus 179 lA~~~GL~l~~ 189 (204)
T PF06080_consen 179 LAAAHGLELEE 189 (204)
T ss_pred HHHHCCCccCc
Confidence 99999998765
|
The function of this family is unknown. |
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=9.2e-11 Score=103.77 Aligned_cols=148 Identities=14% Similarity=0.082 Sum_probs=93.2
Q ss_pred chhHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc-C--CEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCC
Q 020710 130 HSKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ-G--AIVSASDISAAMVAEARKKAEEELLADNGGEAPVMP 206 (322)
Q Consensus 130 ~~~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~-~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~ 206 (322)
.+++...++.-+......++.+|||+|||+|.++.++++. + ..|++||+|+.|++...+.+... .++
T Consensus 114 rSKlaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r----------~NI 183 (293)
T PTZ00146 114 RSKLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR----------PNI 183 (293)
T ss_pred ccHHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc----------CCC
Confidence 3455556655555544567889999999999999999988 3 47999999998765555444321 113
Q ss_pred ceEEcccccC------CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEEC-CChhhHHHHHHhhccCCCCCCc
Q 020710 207 KFEVKDLESL------DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFA-PKTFYYDLLKRVGELFPGPSKA 279 (322)
Q Consensus 207 ~~~~~d~~~~------~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~-~~~~~~~~~~~~~~~~~~~~~~ 279 (322)
.++..|+... .+.||+|++... .++ ....++.++++.+++++.+.+. .... .... ..
T Consensus 184 ~~I~~Da~~p~~y~~~~~~vDvV~~Dva---~pd-q~~il~~na~r~LKpGG~~vI~ika~~----------id~g--~~ 247 (293)
T PTZ00146 184 VPIIEDARYPQKYRMLVPMVDVIFADVA---QPD-QARIVALNAQYFLKNGGHFIISIKANC----------IDST--AK 247 (293)
T ss_pred EEEECCccChhhhhcccCCCCEEEEeCC---Ccc-hHHHHHHHHHHhccCCCEEEEEEeccc----------cccC--CC
Confidence 7888887542 468999998764 233 2445666788877766655442 1110 0000 00
Q ss_pred cccccCCHHHHHHHHHHCCCEEEEEee
Q 020710 280 TRAYLHAEADVERALQKVGWKIRKRGL 306 (322)
Q Consensus 280 ~~~~~~~~~~~~~~l~~aGf~vv~~~~ 306 (322)
.... ++ +++ ++|+++||++++...
T Consensus 248 pe~~-f~-~ev-~~L~~~GF~~~e~v~ 271 (293)
T PTZ00146 248 PEVV-FA-SEV-QKLKKEGLKPKEQLT 271 (293)
T ss_pred HHHH-HH-HHH-HHHHHcCCceEEEEe
Confidence 0110 12 345 889999999887543
|
|
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.9e-10 Score=104.63 Aligned_cols=156 Identities=21% Similarity=0.214 Sum_probs=95.2
Q ss_pred CCCeEEEECCCcccchHHHHhcC-CEEEEEeCCHHHHHHHHHHhHHhhhccCC---CCCCCCCceEEcccccC-------
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQG-AIVSASDISAAMVAEARKKAEEELLADNG---GEAPVMPKFEVKDLESL------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~---~~~~~~~~~~~~d~~~~------- 216 (322)
++.+|||+|||-|..+......+ ..++|+|||...|+.|+++........+. ...+ ...|+.+|....
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f-~a~f~~~D~f~~~l~~~~~ 140 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDF-IAEFIAADCFSESLREKLP 140 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECC-EEEEEESTTCCSHHHCTSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccc-hhheeccccccchhhhhcc
Confidence 57899999999999888887775 46999999999999999999432211100 0001 126778876542
Q ss_pred C--CCccEEEEcccccccC-c-chHHHHHHHHHhccCCeEEEEE-CCCh-hhHHHHHH----------------------
Q 020710 217 D--GKYDTVVCLDVLIHYP-Q-SKADGMIAHLASLAEKRLILSF-APKT-FYYDLLKR---------------------- 268 (322)
Q Consensus 217 ~--~~fD~V~~~~~l~~~~-~-~~~~~~l~~l~~~~~~~~il~~-~~~~-~~~~~~~~---------------------- 268 (322)
+ .+||+|.|..+|||.= . +....+|+.+.+.+++||+++. .++. .....+..
T Consensus 141 ~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~~i~~~l~~~~~~~~~~~~gN~~y~I~f~~~ 220 (331)
T PF03291_consen 141 PRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDSDEIVKRLREKKSNSEKKKFGNSVYSIEFDSD 220 (331)
T ss_dssp STTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHCCHHC-EEECCCSCSETSSEEEEESCC
T ss_pred ccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCHHHHHHHHHhhcccccccccCCccEEEEeccc
Confidence 3 5999999999999864 3 3356799999998877776543 2322 11000111
Q ss_pred -----hhc----cCCCCCCccccccCCHHHHHHHHHHCCCEEEEE
Q 020710 269 -----VGE----LFPGPSKATRAYLHAEADVERALQKVGWKIRKR 304 (322)
Q Consensus 269 -----~~~----~~~~~~~~~~~~~~~~~~~~~~l~~aGf~vv~~ 304 (322)
.|. .+.........|+...+.+.+++.+.||+++..
T Consensus 221 ~~~~~fG~~Y~F~L~~~v~~~~EYlV~~~~~~~la~eyGLeLV~~ 265 (331)
T PF03291_consen 221 DFFPPFGAKYDFYLEDAVDDCPEYLVPFDFFVKLAKEYGLELVEK 265 (331)
T ss_dssp SS--CTTEEEEEEETTCSSCEEEE---HHHHHHHHHHTTEEEEEE
T ss_pred CCCCCCCcEEEEEecCcCCCCceEEeeHHHHHHHHHHcCCEEEEe
Confidence 000 000111233445668899999999999999864
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=99.22 E-value=5.3e-10 Score=97.40 Aligned_cols=164 Identities=16% Similarity=0.223 Sum_probs=121.5
Q ss_pred HHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc----CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCce
Q 020710 133 TVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ----GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKF 208 (322)
Q Consensus 133 ~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~----~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~ 208 (322)
.+...+..+... ..+.+||||.||.|+......+. ..++.-.|.|+..|+..++..++.++.+.+ +|
T Consensus 122 ~i~~ai~~L~~~--g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~-------~f 192 (311)
T PF12147_consen 122 LIRQAIARLREQ--GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIA-------RF 192 (311)
T ss_pred HHHHHHHHHHhc--CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccce-------EE
Confidence 344444455443 36789999999999988777665 247999999999999999999999988744 89
Q ss_pred EEcccccC------CCCccEEEEcccccccCcch-HHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCC-CC-Cc
Q 020710 209 EVKDLESL------DGKYDTVVCLDVLIHYPQSK-ADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPG-PS-KA 279 (322)
Q Consensus 209 ~~~d~~~~------~~~fD~V~~~~~l~~~~~~~-~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~-~~-~~ 279 (322)
+++|+.+. +...|+++.+..++.++|.. +...++-+.+++.++++++++...|+... +-+...+.. .. ..
T Consensus 193 ~~~dAfd~~~l~~l~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQl-e~IAr~LtsHr~g~~ 271 (311)
T PF12147_consen 193 EQGDAFDRDSLAALDPAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQL-EMIARVLTSHRDGKA 271 (311)
T ss_pred EecCCCCHhHhhccCCCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcch-HHHHHHHhcccCCCc
Confidence 99998775 56789999999999999855 46678888888899999988877776653 222222211 00 00
Q ss_pred cccccCCHHHHHHHHHHCCCEEEEEee
Q 020710 280 TRAYLHAEADVERALQKVGWKIRKRGL 306 (322)
Q Consensus 280 ~~~~~~~~~~~~~~l~~aGf~vv~~~~ 306 (322)
.-....+..|+.++++.+||+-+....
T Consensus 272 WvMRrRsq~EmD~Lv~~aGF~K~~q~I 298 (311)
T PF12147_consen 272 WVMRRRSQAEMDQLVEAAGFEKIDQRI 298 (311)
T ss_pred eEEEecCHHHHHHHHHHcCCchhhhee
Confidence 011134899999999999998665443
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.4e-10 Score=104.22 Aligned_cols=161 Identities=13% Similarity=0.141 Sum_probs=103.4
Q ss_pred HHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEccc
Q 020710 136 NTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDL 213 (322)
Q Consensus 136 ~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~ 213 (322)
.+++.+... .+..+||||||+|.++..+++. ...++|+|+++.|++.+.+++...++.+ +.++++|+
T Consensus 113 ~~~~~~~~~---~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~N--------V~~i~~DA 181 (390)
T PRK14121 113 NFLDFISKN---QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKN--------LLIINYDA 181 (390)
T ss_pred HHHHHhcCC---CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCc--------EEEEECCH
Confidence 445555432 4678999999999999999988 5689999999999999999988776654 48899998
Q ss_pred ccC-----CCCccEEEEcccccccCcc----hHHHHHHHHHhccCCeEEEEECC-ChhhHHH-HHHhhccCCCCC-Cccc
Q 020710 214 ESL-----DGKYDTVVCLDVLIHYPQS----KADGMIAHLASLAEKRLILSFAP-KTFYYDL-LKRVGELFPGPS-KATR 281 (322)
Q Consensus 214 ~~~-----~~~fD~V~~~~~l~~~~~~----~~~~~l~~l~~~~~~~~il~~~~-~~~~~~~-~~~~~~~~~~~~-~~~~ 281 (322)
..+ ++++|.|++....-|...+ ....+++.+++++++||.+.+.. ...+..+ ...+........ ....
T Consensus 182 ~~ll~~~~~~s~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~~y~~~~~e~~~~~~~~~~~~~~~ 261 (390)
T PRK14121 182 RLLLELLPSNSVEKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDSELYFEFSLELFLKLPKAKIEIKKN 261 (390)
T ss_pred HHhhhhCCCCceeEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEECHHHHHHHHHHHHhCCCceeecccC
Confidence 543 7899999975433221111 12578999999988777665533 2222222 222222110000 0000
Q ss_pred cccCCHHHHHHHHHHCCCEEEEEeee
Q 020710 282 AYLHAEADVERALQKVGWKIRKRGLI 307 (322)
Q Consensus 282 ~~~~~~~~~~~~l~~aGf~vv~~~~~ 307 (322)
....-..++++-..+.|-.+-.....
T Consensus 262 ~~~~i~TkyE~r~~~~G~~Iy~l~~~ 287 (390)
T PRK14121 262 AQLEVSSKYEDRWKKQNKDIYDLRIY 287 (390)
T ss_pred CCCCCCCHHHHHHHHCCCCEEEEEEE
Confidence 11112347888888899877654443
|
|
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.21 E-value=6.9e-11 Score=96.99 Aligned_cols=124 Identities=11% Similarity=-0.012 Sum_probs=82.1
Q ss_pred EEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC---CCCccEEEEcccccccCcchHHHHHHHHHhccCC
Q 020710 174 SASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL---DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEK 250 (322)
Q Consensus 174 ~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~ 250 (322)
+|+|+|+.|++.|+++........ ..+++|+++|+.++ +++||+|++..+++|+++ ...+++++++++++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~-----~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d--~~~~l~ei~rvLkp 73 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSC-----YKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVD--RLRAMKEMYRVLKP 73 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccC-----CCceEEEEechhhCCCCCCCeeEEEecchhhcCCC--HHHHHHHHHHHcCc
Confidence 489999999999987765322100 01248999999876 578999999999999988 55999999999887
Q ss_pred eEEEEE---CCC-hhhHHHH---------HHhhccCCCCCCccc-------cccCCHHHHHHHHHHCCCEEEEEee
Q 020710 251 RLILSF---APK-TFYYDLL---------KRVGELFPGPSKATR-------AYLHAEADVERALQKVGWKIRKRGL 306 (322)
Q Consensus 251 ~~il~~---~~~-~~~~~~~---------~~~~~~~~~~~~~~~-------~~~~~~~~~~~~l~~aGf~vv~~~~ 306 (322)
||.+.+ ... ....... ...+. +... .... ..+.+.+++.++|+++||+.+....
T Consensus 74 GG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~~~ 147 (160)
T PLN02232 74 GSRVSILDFNKSNQSVTTFMQGWMIDNVVVPVAT-VYDL-AKEYEYLKYSINGYLTGEELETLALEAGFSSACHYE 147 (160)
T ss_pred CeEEEEEECCCCChHHHHHHHHHHccchHhhhhH-HhCC-hHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceEEE
Confidence 775543 221 1111101 01111 1111 1111 1246899999999999999876443
|
|
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.8e-10 Score=96.58 Aligned_cols=99 Identities=20% Similarity=0.264 Sum_probs=85.0
Q ss_pred hHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEc
Q 020710 132 KTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVK 211 (322)
Q Consensus 132 ~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (322)
.++.++++.+... ++.+|||||||+|+.+..|++...+|+.+|..+...+.|++++...+..| +.+.++
T Consensus 59 ~~vA~m~~~L~~~---~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~~lg~~n--------V~v~~g 127 (209)
T COG2518 59 HMVARMLQLLELK---PGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLETLGYEN--------VTVRHG 127 (209)
T ss_pred HHHHHHHHHhCCC---CCCeEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHHHHHcCCCc--------eEEEEC
Confidence 4667777887765 78999999999999999999997799999999999999999999988765 489999
Q ss_pred ccccC---CCCccEEEEcccccccCcchHHHHHHHHH
Q 020710 212 DLESL---DGKYDTVVCLDVLIHYPQSKADGMIAHLA 245 (322)
Q Consensus 212 d~~~~---~~~fD~V~~~~~l~~~~~~~~~~~l~~l~ 245 (322)
|...- .+.||.|++......+|+ .++++|+
T Consensus 128 DG~~G~~~~aPyD~I~Vtaaa~~vP~----~Ll~QL~ 160 (209)
T COG2518 128 DGSKGWPEEAPYDRIIVTAAAPEVPE----ALLDQLK 160 (209)
T ss_pred CcccCCCCCCCcCEEEEeeccCCCCH----HHHHhcc
Confidence 97653 589999999999888877 6676665
|
|
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.18 E-value=4.3e-11 Score=101.08 Aligned_cols=94 Identities=17% Similarity=0.233 Sum_probs=71.2
Q ss_pred eEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC---CCCccEEEEcc
Q 020710 151 AVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL---DGKYDTVVCLD 227 (322)
Q Consensus 151 ~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~fD~V~~~~ 227 (322)
.++|||||+|..++.++++-.+|+|+|+|+.|++.|+++....-... ...+...+..++ +++.|+|+|..
T Consensus 36 ~a~DvG~G~Gqa~~~iae~~k~VIatD~s~~mL~~a~k~~~~~y~~t-------~~~ms~~~~v~L~g~e~SVDlI~~Aq 108 (261)
T KOG3010|consen 36 LAWDVGTGNGQAARGIAEHYKEVIATDVSEAMLKVAKKHPPVTYCHT-------PSTMSSDEMVDLLGGEESVDLITAAQ 108 (261)
T ss_pred eEEEeccCCCcchHHHHHhhhhheeecCCHHHHHHhhcCCCcccccC-------CccccccccccccCCCcceeeehhhh
Confidence 89999999999899999998889999999999999988765432221 113333333443 78999999999
Q ss_pred cccccCcchHHHHHHHHHhcc-CCeEEE
Q 020710 228 VLIHYPQSKADGMIAHLASLA-EKRLIL 254 (322)
Q Consensus 228 ~l~~~~~~~~~~~l~~l~~~~-~~~~il 254 (322)
++|++. ++.+++.+.+++ ++|+++
T Consensus 109 a~HWFd---le~fy~~~~rvLRk~Gg~i 133 (261)
T KOG3010|consen 109 AVHWFD---LERFYKEAYRVLRKDGGLI 133 (261)
T ss_pred hHHhhc---hHHHHHHHHHHcCCCCCEE
Confidence 998876 558888888875 444344
|
|
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.16 E-value=9.8e-11 Score=97.97 Aligned_cols=155 Identities=19% Similarity=0.230 Sum_probs=115.8
Q ss_pred CCeEEEECCCcccchHHHHhcCC-EEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC---CCCccEEE
Q 020710 149 GIAVCDAGCGTGSLAIPLAKQGA-IVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL---DGKYDTVV 224 (322)
Q Consensus 149 ~~~VLDvGcG~G~~~~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~fD~V~ 224 (322)
...++|||||.|.....|...+. +++-+|.|-.|++.++.- +..++.. ...++|-+.+ ++++|+|+
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~-qdp~i~~---------~~~v~DEE~Ldf~ens~DLii 142 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDA-QDPSIET---------SYFVGDEEFLDFKENSVDLII 142 (325)
T ss_pred CcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhcc-CCCceEE---------EEEecchhcccccccchhhhh
Confidence 56899999999999999998865 599999999999988643 2233322 6778887766 78999999
Q ss_pred EcccccccCcchHHHHHHHHHhccCCeEEEE---ECCChhhHH-------HHHHhhccCCCCCCccccccCCHHHHHHHH
Q 020710 225 CLDVLIHYPQSKADGMIAHLASLAEKRLILS---FAPKTFYYD-------LLKRVGELFPGPSKATRAYLHAEADVERAL 294 (322)
Q Consensus 225 ~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~---~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 294 (322)
++..+|+..+ +...+.+++..+++.++++ +...+++.- .+++.+.+-+..+ .+....++..+|
T Consensus 143 sSlslHW~Nd--LPg~m~~ck~~lKPDg~FiasmlggdTLyELR~slqLAelER~GGiSphiS-----Pf~qvrDiG~LL 215 (325)
T KOG2940|consen 143 SSLSLHWTND--LPGSMIQCKLALKPDGLFIASMLGGDTLYELRCSLQLAELEREGGISPHIS-----PFTQVRDIGNLL 215 (325)
T ss_pred hhhhhhhhcc--CchHHHHHHHhcCCCccchhHHhccccHHHHHHHhhHHHHHhccCCCCCcC-----hhhhhhhhhhHH
Confidence 9999988877 7788899988777766553 344444321 2233333333222 133567999999
Q ss_pred HHCCCEEEEEeeeecceehhhhhhhc
Q 020710 295 QKVGWKIRKRGLITTQFYFARLVEAV 320 (322)
Q Consensus 295 ~~aGf~vv~~~~~~~~~~f~~~~~~~ 320 (322)
.++||....++.....+.|.+.++.+
T Consensus 216 ~rAGF~m~tvDtDEi~v~Yp~mfeLm 241 (325)
T KOG2940|consen 216 TRAGFSMLTVDTDEIVVGYPRMFELM 241 (325)
T ss_pred hhcCcccceecccceeecCchHHHHH
Confidence 99999999998888888888887764
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.7e-10 Score=98.40 Aligned_cols=110 Identities=15% Similarity=0.087 Sum_probs=84.5
Q ss_pred HHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc---CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEc
Q 020710 135 ENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ---GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVK 211 (322)
Q Consensus 135 ~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (322)
..++.++... .++.+|||+|||+|+.+..++.. +.+|+++|+++++++.|++++...+..+++ +++.+
T Consensus 57 g~~L~~l~~~--~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i-------~~~~g 127 (234)
T PLN02781 57 GLFLSMLVKI--MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKI-------NFIQS 127 (234)
T ss_pred HHHHHHHHHH--hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcE-------EEEEc
Confidence 3444444433 35789999999999998888765 468999999999999999999998876655 89999
Q ss_pred ccccC---------CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEECC
Q 020710 212 DLESL---------DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAP 258 (322)
Q Consensus 212 d~~~~---------~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~ 258 (322)
|+.+. .++||+|++. ...+....++..+.+++++|+++.+..
T Consensus 128 da~~~L~~l~~~~~~~~fD~VfiD-----a~k~~y~~~~~~~~~ll~~GG~ii~dn 178 (234)
T PLN02781 128 DALSALDQLLNNDPKPEFDFAFVD-----ADKPNYVHFHEQLLKLVKVGGIIAFDN 178 (234)
T ss_pred cHHHHHHHHHhCCCCCCCCEEEEC-----CCHHHHHHHHHHHHHhcCCCeEEEEEc
Confidence 98653 3689999873 223446678888888888888777643
|
|
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.6e-10 Score=94.43 Aligned_cols=106 Identities=20% Similarity=0.146 Sum_probs=73.8
Q ss_pred HHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccc
Q 020710 135 ENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLE 214 (322)
Q Consensus 135 ~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 214 (322)
+++++.+.. .++.+|||+|||+|.++..+++++.+|+++|+++.|++.+++++... .+ ++++.+|+.
T Consensus 3 ~~i~~~~~~---~~~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~~~~~~~~~~~~~---~~-------v~ii~~D~~ 69 (169)
T smart00650 3 DKIVRAANL---RPGDTVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFAAA---DN-------LTVIHGDAL 69 (169)
T ss_pred HHHHHhcCC---CCcCEEEEECCCccHHHHHHHhcCCeEEEEECCHHHHHHHHHHhccC---CC-------EEEEECchh
Confidence 344555443 35679999999999999999999889999999999999999887541 12 388999988
Q ss_pred cC---CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEE
Q 020710 215 SL---DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSF 256 (322)
Q Consensus 215 ~~---~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~ 256 (322)
+. +..||.|+++--+ |+..+.+..+++.. ....++++++
T Consensus 70 ~~~~~~~~~d~vi~n~Py-~~~~~~i~~~l~~~--~~~~~~~l~~ 111 (169)
T smart00650 70 KFDLPKLQPYKVVGNLPY-NISTPILFKLLEEP--PAFRDAVLMV 111 (169)
T ss_pred cCCccccCCCEEEECCCc-ccHHHHHHHHHhcC--CCcceEEEEE
Confidence 76 3469999986554 44332233333321 1235566655
|
|
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=99.14 E-value=5.9e-10 Score=106.01 Aligned_cols=113 Identities=27% Similarity=0.397 Sum_probs=81.0
Q ss_pred HHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcc
Q 020710 133 TVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKD 212 (322)
Q Consensus 133 ~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d 212 (322)
+++.+.+++.. .++.+|||+|||+|.++..+++.+.+|+|+|+++.|++.|++++...+..+ ++|+.+|
T Consensus 280 l~~~~~~~l~~---~~~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~~a~~n~~~~~~~n--------v~~~~~d 348 (431)
T TIGR00479 280 LVDRALEALEL---QGEELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQQNAELNGIAN--------VEFLAGT 348 (431)
T ss_pred HHHHHHHHhcc---CCCCEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHHHHHHHHHHhCCCc--------eEEEeCC
Confidence 34455555532 246799999999999999999988899999999999999999988766532 4899999
Q ss_pred cccC-------CCCccEEEEcccccccCcch-HHHHHHHHHhccCCeE-EEEECCChh
Q 020710 213 LESL-------DGKYDTVVCLDVLIHYPQSK-ADGMIAHLASLAEKRL-ILSFAPKTF 261 (322)
Q Consensus 213 ~~~~-------~~~fD~V~~~~~l~~~~~~~-~~~~l~~l~~~~~~~~-il~~~~~~~ 261 (322)
+.+. +++||+|++ ..|... ...+++.+.++.++++ +++|.|.++
T Consensus 349 ~~~~l~~~~~~~~~~D~vi~-----dPPr~G~~~~~l~~l~~l~~~~ivyvsc~p~tl 401 (431)
T TIGR00479 349 LETVLPKQPWAGQIPDVLLL-----DPPRKGCAAEVLRTIIELKPERIVYVSCNPATL 401 (431)
T ss_pred HHHHHHHHHhcCCCCCEEEE-----CcCCCCCCHHHHHHHHhcCCCEEEEEcCCHHHH
Confidence 8652 357999995 333322 2466777766544443 345655554
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=8.2e-10 Score=94.57 Aligned_cols=91 Identities=18% Similarity=0.093 Sum_probs=67.2
Q ss_pred CCCCeEEEECCCcccchHHHHhc---CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-------
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQ---GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL------- 216 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~------- 216 (322)
.++.+|||||||+|.++..+++. +.+|+|||+++ |. ... .+.++++|+.+.
T Consensus 50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~~----------~~~--------~v~~i~~D~~~~~~~~~i~ 110 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-MD----------PIV--------GVDFLQGDFRDELVLKALL 110 (209)
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-cc----------CCC--------CcEEEecCCCChHHHHHHH
Confidence 46789999999999999999887 35899999988 21 111 138899998762
Q ss_pred ----CCCccEEEEcccccccCcch---------HHHHHHHHHhccCCeEEEEE
Q 020710 217 ----DGKYDTVVCLDVLIHYPQSK---------ADGMIAHLASLAEKRLILSF 256 (322)
Q Consensus 217 ----~~~fD~V~~~~~l~~~~~~~---------~~~~l~~l~~~~~~~~il~~ 256 (322)
+++||+|++..+.++...+. ...+++.+.+++++||.+.+
T Consensus 111 ~~~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi 163 (209)
T PRK11188 111 ERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVV 163 (209)
T ss_pred HHhCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 57899999987765543321 24678888888877766554
|
|
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.9e-09 Score=87.46 Aligned_cols=124 Identities=19% Similarity=0.116 Sum_probs=92.1
Q ss_pred CCCCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--C-CCc
Q 020710 146 SLKGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL--D-GKY 220 (322)
Q Consensus 146 ~~~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~-~~f 220 (322)
+.++.+++|||||||..+..++.. .++|+++|-++++++..++++...+.++ +..+.+|+.+. + .+|
T Consensus 32 ~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n--------~~vv~g~Ap~~L~~~~~~ 103 (187)
T COG2242 32 PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDN--------LEVVEGDAPEALPDLPSP 103 (187)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCc--------EEEEeccchHhhcCCCCC
Confidence 347899999999999999999944 6789999999999999999999988554 48899998775 2 279
Q ss_pred cEEEEcccccccCcchHHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCCCCCccccccCCHHHHHHHHHHCCC-
Q 020710 221 DTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQKVGW- 299 (322)
Q Consensus 221 D~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf- 299 (322)
|.|+.... .. +..+++.+...+++++-+..+--+ ..+....-+++++.|+
T Consensus 104 daiFIGGg-~~-----i~~ile~~~~~l~~ggrlV~nait-----------------------lE~~~~a~~~~~~~g~~ 154 (187)
T COG2242 104 DAIFIGGG-GN-----IEEILEAAWERLKPGGRLVANAIT-----------------------LETLAKALEALEQLGGR 154 (187)
T ss_pred CEEEECCC-CC-----HHHHHHHHHHHcCcCCeEEEEeec-----------------------HHHHHHHHHHHHHcCCc
Confidence 99999887 32 557777777765555444332111 1123456678888888
Q ss_pred EEEEEee
Q 020710 300 KIRKRGL 306 (322)
Q Consensus 300 ~vv~~~~ 306 (322)
++++...
T Consensus 155 ei~~v~i 161 (187)
T COG2242 155 EIVQVQI 161 (187)
T ss_pred eEEEEEe
Confidence 6666543
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=5.7e-10 Score=98.82 Aligned_cols=119 Identities=16% Similarity=0.104 Sum_probs=82.5
Q ss_pred CCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC----CCCcc
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL----DGKYD 221 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~~fD 221 (322)
++.+|||||||+|.++..+++. +.+++++|+++++++.|++.+.......+ ++++.+|+.+. .++||
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~r-------v~v~~~Da~~~l~~~~~~yD 138 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGER-------FEVIEADGAEYIAVHRHSTD 138 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCc-------eEEEECCHHHHHHhCCCCCC
Confidence 4678999999999999999876 57899999999999999998754332223 38899997543 57899
Q ss_pred EEEEcccc-cccCcch-HHHHHHHHHhccCCeEEEEEC---CChhhHHHHHHhhccC
Q 020710 222 TVVCLDVL-IHYPQSK-ADGMIAHLASLAEKRLILSFA---PKTFYYDLLKRVGELF 273 (322)
Q Consensus 222 ~V~~~~~l-~~~~~~~-~~~~l~~l~~~~~~~~il~~~---~~~~~~~~~~~~~~~~ 273 (322)
+|++...- ..++... ...+++.+++.++++|++.++ ........+..+...|
T Consensus 139 ~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~~~~~~~~l~~l~~~F 195 (262)
T PRK04457 139 VILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWSRDKRYDRYLERLESSF 195 (262)
T ss_pred EEEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCCCchhHHHHHHHHHHhc
Confidence 99975311 1222211 258999999988777766552 2222334444444444
|
|
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=7.9e-10 Score=93.84 Aligned_cols=104 Identities=13% Similarity=0.043 Sum_probs=76.3
Q ss_pred HHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEccc
Q 020710 136 NTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDL 213 (322)
Q Consensus 136 ~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~ 213 (322)
.+++.+.. .++.+|||+|||+|.++..+++. +.+|+++|+|+.|++.+++++...+..+ ++++.+|+
T Consensus 31 ~l~~~l~~---~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~--------v~~~~~d~ 99 (196)
T PRK07402 31 LLISQLRL---EPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKN--------VEVIEGSA 99 (196)
T ss_pred HHHHhcCC---CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCC--------eEEEECch
Confidence 34455432 35789999999999999999865 5789999999999999999988765532 38888887
Q ss_pred ccC----CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEE
Q 020710 214 ESL----DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSF 256 (322)
Q Consensus 214 ~~~----~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~ 256 (322)
.+. ...+|.|+... . .....+++.+.+.+++||.+.+
T Consensus 100 ~~~~~~~~~~~d~v~~~~-----~-~~~~~~l~~~~~~LkpgG~li~ 140 (196)
T PRK07402 100 PECLAQLAPAPDRVCIEG-----G-RPIKEILQAVWQYLKPGGRLVA 140 (196)
T ss_pred HHHHhhCCCCCCEEEEEC-----C-cCHHHHHHHHHHhcCCCeEEEE
Confidence 542 34568776432 1 1256889999888777765554
|
|
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.5e-10 Score=100.58 Aligned_cols=107 Identities=26% Similarity=0.323 Sum_probs=79.7
Q ss_pred HHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcC--CEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcc
Q 020710 135 ENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQG--AIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKD 212 (322)
Q Consensus 135 ~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d 212 (322)
+-+++.+... ...+|||+|||.|.++..+++.. .+++-+|+|..+++.+++++..++..+ ..+...|
T Consensus 148 ~lLl~~l~~~---~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~--------~~v~~s~ 216 (300)
T COG2813 148 RLLLETLPPD---LGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVEN--------TEVWASN 216 (300)
T ss_pred HHHHHhCCcc---CCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCc--------cEEEEec
Confidence 4455666554 45599999999999999999984 589999999999999999999887654 1355566
Q ss_pred ccc-CCCCccEEEEcccccccCc---chHHHHHHHHHhccCCeE
Q 020710 213 LES-LDGKYDTVVCLDVLIHYPQ---SKADGMIAHLASLAEKRL 252 (322)
Q Consensus 213 ~~~-~~~~fD~V~~~~~l~~~~~---~~~~~~l~~l~~~~~~~~ 252 (322)
..+ ..++||+|+|+--+|-=.+ ....++++..++.+..||
T Consensus 217 ~~~~v~~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gG 260 (300)
T COG2813 217 LYEPVEGKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGG 260 (300)
T ss_pred ccccccccccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCC
Confidence 544 4669999999998853221 112478888887665444
|
|
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=99.11 E-value=4.2e-10 Score=96.87 Aligned_cols=137 Identities=23% Similarity=0.316 Sum_probs=89.3
Q ss_pred CCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccc---cCCCCccEEE
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLE---SLDGKYDTVV 224 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~---~~~~~fD~V~ 224 (322)
...++||||+|.|..+..++..-.+|++.|.|+.|....+++ .|.+.|.. +.+.+||+|.
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~~Mr~rL~~k-----------------g~~vl~~~~w~~~~~~fDvIs 156 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFKEVYATEASPPMRWRLSKK-----------------GFTVLDIDDWQQTDFKFDVIS 156 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcceEEeecCCHHHHHHHHhC-----------------CCeEEehhhhhccCCceEEEe
Confidence 467899999999999999999888899999999997665543 23333333 3367899999
Q ss_pred EcccccccCcchHHHHHHHHHhccCCeEEEEE---CCChhhHHHHH----HhhccCCCCCCccccccCCHHHHHHHHHHC
Q 020710 225 CLDVLIHYPQSKADGMIAHLASLAEKRLILSF---APKTFYYDLLK----RVGELFPGPSKATRAYLHAEADVERALQKV 297 (322)
Q Consensus 225 ~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~---~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a 297 (322)
|.++|....+|. .+|+.+++.++++|++++ .|-..+-+... ...+.++... ..+--....+-+.++.+
T Consensus 157 cLNvLDRc~~P~--~LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~e~l~~~g---~~~E~~v~~l~~v~~p~ 231 (265)
T PF05219_consen 157 CLNVLDRCDRPL--TLLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNRPSELLPVKG---ATFEEQVSSLVNVFEPA 231 (265)
T ss_pred ehhhhhccCCHH--HHHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCCchhhcCCCC---CcHHHHHHHHHHHHHhc
Confidence 999999888876 999999987655554432 23222111110 1111111100 11111233444889999
Q ss_pred CCEEEEEee
Q 020710 298 GWKIRKRGL 306 (322)
Q Consensus 298 Gf~vv~~~~ 306 (322)
||+++....
T Consensus 232 GF~v~~~tr 240 (265)
T PF05219_consen 232 GFEVERWTR 240 (265)
T ss_pred CCEEEEEec
Confidence 999987543
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=99.10 E-value=4.2e-10 Score=95.93 Aligned_cols=93 Identities=19% Similarity=0.269 Sum_probs=71.6
Q ss_pred hhHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc-C--CEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCc
Q 020710 131 SKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ-G--AIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPK 207 (322)
Q Consensus 131 ~~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~-~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~ 207 (322)
..++.++++.+.. .++.+|||||||+|+++..++.. + .+|++||+.+..++.|++++...+..+ +.
T Consensus 58 P~~~a~~l~~L~l---~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~n--------v~ 126 (209)
T PF01135_consen 58 PSMVARMLEALDL---KPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDN--------VE 126 (209)
T ss_dssp HHHHHHHHHHTTC----TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHS--------EE
T ss_pred HHHHHHHHHHHhc---CCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCc--------ee
Confidence 3456777777774 47899999999999999999887 3 369999999999999999999877654 48
Q ss_pred eEEcccccC---CCCccEEEEcccccccCc
Q 020710 208 FEVKDLESL---DGKYDTVVCLDVLIHYPQ 234 (322)
Q Consensus 208 ~~~~d~~~~---~~~fD~V~~~~~l~~~~~ 234 (322)
++++|.... .+.||.|++......+|.
T Consensus 127 ~~~gdg~~g~~~~apfD~I~v~~a~~~ip~ 156 (209)
T PF01135_consen 127 VVVGDGSEGWPEEAPFDRIIVTAAVPEIPE 156 (209)
T ss_dssp EEES-GGGTTGGG-SEEEEEESSBBSS--H
T ss_pred EEEcchhhccccCCCcCEEEEeeccchHHH
Confidence 999997653 578999999988876654
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=9.1e-10 Score=98.66 Aligned_cols=107 Identities=13% Similarity=0.071 Sum_probs=77.6
Q ss_pred CCCeEEEECCCcccchHHHHhc-C-CEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC----CCCcc
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQ-G-AIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL----DGKYD 221 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~-~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~~fD 221 (322)
++.+||+||||+|..+..++++ + .+|++||+++.+++.+++.+....... ..-.+++++.+|+... .++||
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~---~~d~rv~v~~~Da~~~l~~~~~~yD 152 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGA---YDDPRVELVIGDGIKFVAETENSFD 152 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhcccc---ccCCceEEEECchHHHHhhCCCccc
Confidence 4679999999999999999887 4 479999999999999999886532100 0012238899997653 57899
Q ss_pred EEEEcccccccCcchH--HHHHHHHHhccCCeEEEEEC
Q 020710 222 TVVCLDVLIHYPQSKA--DGMIAHLASLAEKRLILSFA 257 (322)
Q Consensus 222 ~V~~~~~l~~~~~~~~--~~~l~~l~~~~~~~~il~~~ 257 (322)
+|++...-.+.+...+ ..+++.+++.++++|++.+.
T Consensus 153 vIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 153 VIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred EEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 9998654333222222 57888999988777776653
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=7.3e-10 Score=111.04 Aligned_cols=136 Identities=19% Similarity=0.121 Sum_probs=95.5
Q ss_pred CCCeEEEECCCcccchHHHHhcCC-EEEEEeCCHHHHHHHHHHhHHhhhc-cCCCCCCCCCceEEcccccC----CCCcc
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQGA-IVSASDISAAMVAEARKKAEEELLA-DNGGEAPVMPKFEVKDLESL----DGKYD 221 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~-~~~~~~~~~~~~~~~d~~~~----~~~fD 221 (322)
++.+|||+|||+|.++..++..|+ +|++||+|+.+++.+++++..+++. +++ +|+++|+.+. .++||
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v-------~~i~~D~~~~l~~~~~~fD 610 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQH-------RLIQADCLAWLKEAREQFD 610 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccce-------EEEEccHHHHHHHcCCCcC
Confidence 468999999999999999999876 5999999999999999999887764 333 8999997653 57899
Q ss_pred EEEEccccc-------ccC--cchHHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCCCCCccccccCCHHHHHH
Q 020710 222 TVVCLDVLI-------HYP--QSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADVER 292 (322)
Q Consensus 222 ~V~~~~~l~-------~~~--~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (322)
+|++.--.. ... ......+++.+.+++++||++.+..+.. . .. ...+
T Consensus 611 lIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~--------------------~--~~--~~~~ 666 (702)
T PRK11783 611 LIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKR--------------------G--FK--MDEE 666 (702)
T ss_pred EEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCc--------------------c--CC--hhHH
Confidence 999853210 000 0114566777777776666665432210 0 01 1267
Q ss_pred HHHHCCCEEEEEeeeecceehh
Q 020710 293 ALQKVGWKIRKRGLITTQFYFA 314 (322)
Q Consensus 293 ~l~~aGf~vv~~~~~~~~~~f~ 314 (322)
++.++|+++...+......-|.
T Consensus 667 ~~~~~g~~~~~i~~~~~~~Dhp 688 (702)
T PRK11783 667 GLAKLGLKAEEITAKTLPPDFA 688 (702)
T ss_pred HHHhCCCeEEEEecCCCCCCCC
Confidence 7888999887766555544443
|
|
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=99.08 E-value=1e-09 Score=102.15 Aligned_cols=103 Identities=18% Similarity=0.195 Sum_probs=77.7
Q ss_pred CCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC----CCCccEE
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL----DGKYDTV 223 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~~fD~V 223 (322)
++.+|||+|||+|.++..++..+.+|+|||+++.+++.|++++...+..+ ++|.++|+.+. .++||+|
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av~~a~~N~~~~~~~~--------~~~~~~d~~~~~~~~~~~~D~v 304 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQQSAQMLGLDN--------LSFAALDSAKFATAQMSAPELV 304 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhcCCeEEEEECCHHHHHHHHHHHHHcCCCc--------EEEEECCHHHHHHhcCCCCCEE
Confidence 45799999999999999999888899999999999999999998776532 38999998653 2569999
Q ss_pred EEcccccccCcch-HHHHHHHHHhccC-CeEEEEECCChhhH
Q 020710 224 VCLDVLIHYPQSK-ADGMIAHLASLAE-KRLILSFAPKTFYY 263 (322)
Q Consensus 224 ~~~~~l~~~~~~~-~~~~l~~l~~~~~-~~~il~~~~~~~~~ 263 (322)
++.- |... ...+++.+.++.+ .-+++++.|.++.+
T Consensus 305 i~DP-----Pr~G~~~~~l~~l~~~~p~~ivyvsc~p~TlaR 341 (374)
T TIGR02085 305 LVNP-----PRRGIGKELCDYLSQMAPKFILYSSCNAQTMAK 341 (374)
T ss_pred EECC-----CCCCCcHHHHHHHHhcCCCeEEEEEeCHHHHHH
Confidence 9753 3222 2356666666543 34456777776643
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=99.07 E-value=9.4e-10 Score=112.74 Aligned_cols=116 Identities=20% Similarity=0.100 Sum_probs=78.6
Q ss_pred HHhcCCCcccchhhhhhcCchhHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHH
Q 020710 111 KIYGETDDVNRVQLDIRLGHSKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARK 188 (322)
Q Consensus 111 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~ 188 (322)
.+|+....+++....+|...+.+++. +...... ..++.+|||+|||+|..+..+++. ..+|+|+|+|+.+++.|++
T Consensus 83 ~F~~l~~~V~p~VLIPRpeTE~lve~-L~~~~~~-~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~ 160 (1082)
T PLN02672 83 NRKKLTMMEIPSIFIPEDWSFTFYEG-LNRHPDS-IFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWI 160 (1082)
T ss_pred EecCCceeeCCCcccCchhHHHHHHH-HHhcccc-cCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHH
Confidence 44555555666666777666666665 3332111 113468999999999999999987 3689999999999999999
Q ss_pred HhHHhhhcc--------CCCCCCCCCceEEcccccC-C---CCccEEEEccc
Q 020710 189 KAEEELLAD--------NGGEAPVMPKFEVKDLESL-D---GKYDTVVCLDV 228 (322)
Q Consensus 189 ~~~~~~~~~--------~~~~~~~~~~~~~~d~~~~-~---~~fD~V~~~~~ 228 (322)
++..+++.. ..+....+++|+++|+.+. . .+||+|+++--
T Consensus 161 Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~~~~~~fDlIVSNPP 212 (1082)
T PLN02672 161 NLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCRDNNIELDRIVGCIP 212 (1082)
T ss_pred HHHHcCcccccccccccccccccccEEEEECchhhhccccCCceEEEEECCC
Confidence 997654320 0000011349999998764 2 36999999764
|
|
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.06 E-value=9e-10 Score=103.51 Aligned_cols=118 Identities=31% Similarity=0.410 Sum_probs=96.9
Q ss_pred hhHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEE
Q 020710 131 SKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEV 210 (322)
Q Consensus 131 ~~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~ 210 (322)
+.+++.+++++... ++.+|||+-||.|.++..|++...+|+|+|+++++++.|+++++.+++.| + .|+.
T Consensus 279 ekl~~~a~~~~~~~---~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~~NA~~n~i~N-~-------~f~~ 347 (432)
T COG2265 279 EKLYETALEWLELA---GGERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQENAAANGIDN-V-------EFIA 347 (432)
T ss_pred HHHHHHHHHHHhhc---CCCEEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHHHHHHHHcCCCc-E-------EEEe
Confidence 45667777777764 56899999999999999999999999999999999999999999998876 3 8999
Q ss_pred cccccC------CCCccEEEEcccccccCcchHH-HHHHHHHhccC-CeEEEEECCChhhHH
Q 020710 211 KDLESL------DGKYDTVVCLDVLIHYPQSKAD-GMIAHLASLAE-KRLILSFAPKTFYYD 264 (322)
Q Consensus 211 ~d~~~~------~~~fD~V~~~~~l~~~~~~~~~-~~l~~l~~~~~-~~~il~~~~~~~~~~ 264 (322)
+|+++. ...+|+|+. ..|...+. .+++.+.+..+ .-++++|+|.++..+
T Consensus 348 ~~ae~~~~~~~~~~~~d~Vvv-----DPPR~G~~~~~lk~l~~~~p~~IvYVSCNP~TlaRD 404 (432)
T COG2265 348 GDAEEFTPAWWEGYKPDVVVV-----DPPRAGADREVLKQLAKLKPKRIVYVSCNPATLARD 404 (432)
T ss_pred CCHHHHhhhccccCCCCEEEE-----CCCCCCCCHHHHHHHHhcCCCcEEEEeCCHHHHHHH
Confidence 999886 257899984 66665554 88888888754 446889999887644
|
|
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.2e-09 Score=81.38 Aligned_cols=97 Identities=32% Similarity=0.398 Sum_probs=73.9
Q ss_pred eEEEECCCcccchHHHHh-cCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC----CCCccEEEE
Q 020710 151 AVCDAGCGTGSLAIPLAK-QGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL----DGKYDTVVC 225 (322)
Q Consensus 151 ~VLDvGcG~G~~~~~la~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~~fD~V~~ 225 (322)
+|+|+|||.|.++..+++ .+.+++++|+++.+++.+++....... ..+.+...|..+. .++||+|++
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~d~i~~ 72 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLA--------DNVEVLKGDAEELPPEADESFDVIIS 72 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccc--------cceEEEEcChhhhccccCCceEEEEE
Confidence 589999999999999988 467899999999999988853322211 1237888887664 468999999
Q ss_pred cccccccCcchHHHHHHHHHhccCCeEEEEE
Q 020710 226 LDVLIHYPQSKADGMIAHLASLAEKRLILSF 256 (322)
Q Consensus 226 ~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~ 256 (322)
..+++++ ......+++.+.+.+++++++.+
T Consensus 73 ~~~~~~~-~~~~~~~l~~~~~~l~~~g~~~~ 102 (107)
T cd02440 73 DPPLHHL-VEDLARFLEEARRLLKPGGVLVL 102 (107)
T ss_pred ccceeeh-hhHHHHHHHHHHHHcCCCCEEEE
Confidence 9999884 22356888888887766666554
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=8e-10 Score=100.23 Aligned_cols=91 Identities=20% Similarity=0.201 Sum_probs=69.9
Q ss_pred HHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc-C--CEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceE
Q 020710 133 TVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ-G--AIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFE 209 (322)
Q Consensus 133 ~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~-~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~ 209 (322)
+...+++.+.. .++.+|||||||+|.++..+++. + .+|+++|+++.|++.|++++...+..+ +.++
T Consensus 68 l~a~ll~~L~i---~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~n--------V~~i 136 (322)
T PRK13943 68 LMALFMEWVGL---DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIEN--------VIFV 136 (322)
T ss_pred HHHHHHHhcCC---CCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCc--------EEEE
Confidence 34455555543 35789999999999999999886 2 369999999999999999988766532 3788
Q ss_pred EcccccC---CCCccEEEEcccccccCc
Q 020710 210 VKDLESL---DGKYDTVVCLDVLIHYPQ 234 (322)
Q Consensus 210 ~~d~~~~---~~~fD~V~~~~~l~~~~~ 234 (322)
++|+... .+.||+|++...+.++++
T Consensus 137 ~gD~~~~~~~~~~fD~Ii~~~g~~~ip~ 164 (322)
T PRK13943 137 CGDGYYGVPEFAPYDVIFVTVGVDEVPE 164 (322)
T ss_pred eCChhhcccccCCccEEEECCchHHhHH
Confidence 8887553 367999999877666543
|
|
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.5e-09 Score=92.22 Aligned_cols=100 Identities=17% Similarity=0.115 Sum_probs=81.4
Q ss_pred CCCeEEEECCCcccchHHHHhc---CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQ---GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
++.+||||||++|+.+.++++. +.+|+.+|++++..+.|++.+...+..+++ +++.+|+.+.
T Consensus 45 ~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I-------~~~~gda~~~l~~l~~~~ 117 (205)
T PF01596_consen 45 RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRI-------EVIEGDALEVLPELANDG 117 (205)
T ss_dssp T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGE-------EEEES-HHHHHHHHHHTT
T ss_pred CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcE-------EEEEeccHhhHHHHHhcc
Confidence 4789999999999999999976 679999999999999999999999887766 9999998653
Q ss_pred -CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEECCC
Q 020710 217 -DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPK 259 (322)
Q Consensus 217 -~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~ 259 (322)
.++||+|+.-. .......+++.+.+++++|++|.+..-
T Consensus 118 ~~~~fD~VFiDa-----~K~~y~~y~~~~~~ll~~ggvii~DN~ 156 (205)
T PF01596_consen 118 EEGQFDFVFIDA-----DKRNYLEYFEKALPLLRPGGVIIADNV 156 (205)
T ss_dssp TTTSEEEEEEES-----TGGGHHHHHHHHHHHEEEEEEEEEETT
T ss_pred CCCceeEEEEcc-----cccchhhHHHHHhhhccCCeEEEEccc
Confidence 25799999633 334467888888888888888877543
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.8e-09 Score=91.34 Aligned_cols=92 Identities=12% Similarity=0.149 Sum_probs=70.4
Q ss_pred CCeEEEECCCcccchHHHHhc-----CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--CCCcc
Q 020710 149 GIAVCDAGCGTGSLAIPLAKQ-----GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL--DGKYD 221 (322)
Q Consensus 149 ~~~VLDvGcG~G~~~~~la~~-----~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~fD 221 (322)
+.+|||+|||+|.++..++++ ..+|+++|+++.+++.|+++... +.++..|+... +++||
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~-------------~~~~~~D~~~~~~~~~FD 116 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPE-------------ATWINADALTTEFDTLFD 116 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccC-------------CEEEEcchhcccccCCcc
Confidence 679999999999999988864 45899999999999999977532 27888998654 67899
Q ss_pred EEEEcccccccC--c--------chHHHHHHHHHhccCCeEE
Q 020710 222 TVVCLDVLIHYP--Q--------SKADGMIAHLASLAEKRLI 253 (322)
Q Consensus 222 ~V~~~~~l~~~~--~--------~~~~~~l~~l~~~~~~~~i 253 (322)
+|+++--+.-.. + .....+++...+++++|.+
T Consensus 117 lIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 117 MAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred EEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 999987654222 1 1134577777777777775
|
|
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=3.6e-09 Score=100.36 Aligned_cols=104 Identities=21% Similarity=0.210 Sum_probs=77.5
Q ss_pred CCCCeEEEECCCcccchHHHHhcC--CEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-----CCC
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQG--AIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-----DGK 219 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-----~~~ 219 (322)
.++.+|||+|||+|..+..+++.+ .+|+++|+|+.+++.+++++...+... .++++|+.++ .++
T Consensus 243 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~---------~~~~~D~~~~~~~~~~~~ 313 (427)
T PRK10901 243 QNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKA---------TVIVGDARDPAQWWDGQP 313 (427)
T ss_pred CCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCe---------EEEEcCcccchhhcccCC
Confidence 467899999999999999999873 589999999999999999998876543 7889998754 367
Q ss_pred ccEEEEcc------cccccCc------ch--------HHHHHHHHHhccCCeEEEEECCC
Q 020710 220 YDTVVCLD------VLIHYPQ------SK--------ADGMIAHLASLAEKRLILSFAPK 259 (322)
Q Consensus 220 fD~V~~~~------~l~~~~~------~~--------~~~~l~~l~~~~~~~~il~~~~~ 259 (322)
||.|++.. ++.+-|+ +. ..++++.+.+++++||.+.+...
T Consensus 314 fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystc 373 (427)
T PRK10901 314 FDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATC 373 (427)
T ss_pred CCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 99999532 1221111 10 23678888888877776665443
|
|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=4.6e-09 Score=100.17 Aligned_cols=107 Identities=20% Similarity=0.168 Sum_probs=79.2
Q ss_pred CCCCeEEEECCCcccchHHHHhc---CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--CCCcc
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQ---GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL--DGKYD 221 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~fD 221 (322)
.++.+|||+|||+|..+..+++. +.+|+++|+|+.+++.+++++...+..+ +++.++|+... +++||
T Consensus 249 ~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~--------v~~~~~Da~~~~~~~~fD 320 (445)
T PRK14904 249 QPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITI--------IETIEGDARSFSPEEQPD 320 (445)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCe--------EEEEeCcccccccCCCCC
Confidence 36789999999999999888875 4589999999999999999998877642 38889998765 56899
Q ss_pred EEEEc----c--cccccC-------cch-------HHHHHHHHHhccCCeEEEEECCChh
Q 020710 222 TVVCL----D--VLIHYP-------QSK-------ADGMIAHLASLAEKRLILSFAPKTF 261 (322)
Q Consensus 222 ~V~~~----~--~l~~~~-------~~~-------~~~~l~~l~~~~~~~~il~~~~~~~ 261 (322)
+|++- . ++..-| .+. -..++..+.+.+++||++.+...+.
T Consensus 321 ~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~ 380 (445)
T PRK14904 321 AILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSI 380 (445)
T ss_pred EEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 99962 1 221111 111 1357888888888888776655444
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=6.4e-09 Score=98.87 Aligned_cols=106 Identities=23% Similarity=0.252 Sum_probs=80.9
Q ss_pred CCCCeEEEECCCcccchHHHHhc---CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-------
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQ---GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL------- 216 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~------- 216 (322)
.++.+|||+|||+|..+..+++. ..+|+++|+++.+++.+++++...+..+ +.++++|+...
T Consensus 251 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~--------v~~~~~D~~~~~~~~~~~ 322 (434)
T PRK14901 251 QPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKS--------IKILAADSRNLLELKPQW 322 (434)
T ss_pred CCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCe--------EEEEeCChhhcccccccc
Confidence 46789999999999999999886 3589999999999999999998877643 38888888654
Q ss_pred CCCccEEEEc------ccccccCcch--------------HHHHHHHHHhccCCeEEEEECCCh
Q 020710 217 DGKYDTVVCL------DVLIHYPQSK--------------ADGMIAHLASLAEKRLILSFAPKT 260 (322)
Q Consensus 217 ~~~fD~V~~~------~~l~~~~~~~--------------~~~~l~~l~~~~~~~~il~~~~~~ 260 (322)
.++||.|++. .++.+-|+.. ..++++++.+++++||.+.+...+
T Consensus 323 ~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcs 386 (434)
T PRK14901 323 RGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCT 386 (434)
T ss_pred cccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 3689999963 3555545411 246788888888777776654443
|
|
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=8.1e-09 Score=96.48 Aligned_cols=102 Identities=22% Similarity=0.156 Sum_probs=72.7
Q ss_pred CCCeEEEECCCcccchHHHHhcCC-EEEEEeCCHHHHHHHHHHhHHhhhc-cCCCCCCCCCceEEcccccC-------CC
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQGA-IVSASDISAAMVAEARKKAEEELLA-DNGGEAPVMPKFEVKDLESL-------DG 218 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~-~~~~~~~~~~~~~~~d~~~~-------~~ 218 (322)
++.+|||+|||+|.++..++..++ +|++||+|+.+++.+++++..+++. .+ ++++++|+.+. .+
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~-------v~~i~~D~~~~l~~~~~~~~ 292 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSK-------AEFVRDDVFKLLRTYRDRGE 292 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCc-------EEEEEccHHHHHHHHHhcCC
Confidence 478999999999999988776665 7999999999999999999887764 22 38999998664 35
Q ss_pred CccEEEEcccccccCcc-------hHHHHHHHHHhccCCeEEEEE
Q 020710 219 KYDTVVCLDVLIHYPQS-------KADGMIAHLASLAEKRLILSF 256 (322)
Q Consensus 219 ~fD~V~~~~~l~~~~~~-------~~~~~l~~l~~~~~~~~il~~ 256 (322)
+||+|++.--...-... ....+++...++++++|++.+
T Consensus 293 ~fDlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~ 337 (396)
T PRK15128 293 KFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLT 337 (396)
T ss_pred CCCEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEE
Confidence 89999987442111111 123344455566666665543
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=5.7e-09 Score=81.75 Aligned_cols=88 Identities=24% Similarity=0.212 Sum_probs=68.3
Q ss_pred CCCeEEEECCCccc-chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC----CCCccE
Q 020710 148 KGIAVCDAGCGTGS-LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL----DGKYDT 222 (322)
Q Consensus 148 ~~~~VLDvGcG~G~-~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~~fD~ 222 (322)
++.+|||||||.|. .+..|++.|.+|+++|+++..++.++++. +.++..|+.+. -+.+|+
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~---------------~~~v~dDlf~p~~~~y~~a~l 80 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKESGFDVIVIDINEKAVEKAKKLG---------------LNAFVDDLFNPNLEIYKNAKL 80 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhC---------------CeEEECcCCCCCHHHHhcCCE
Confidence 46789999999996 88899999999999999999988886653 17899999887 367999
Q ss_pred EEEcccccccCcchHHHHHHHHHhccCCeEEEE
Q 020710 223 VVCLDVLIHYPQSKADGMIAHLASLAEKRLILS 255 (322)
Q Consensus 223 V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~ 255 (322)
|++. -|.+++...+.++++-.+-.+++.
T Consensus 81 iysi-----rpp~el~~~~~~la~~~~~~~~i~ 108 (134)
T PRK04148 81 IYSI-----RPPRDLQPFILELAKKINVPLIIK 108 (134)
T ss_pred EEEe-----CCCHHHHHHHHHHHHHcCCCEEEE
Confidence 9963 345556666666666555555553
|
|
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.99 E-value=4.1e-09 Score=92.65 Aligned_cols=156 Identities=19% Similarity=0.190 Sum_probs=102.4
Q ss_pred CCCeEEEECCCcccchHHHHhcCC-EEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC---------C
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQGA-IVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL---------D 217 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---------~ 217 (322)
+...++|+|||-|..++..-+.|. +++|+||+...|+.|+++..+...... +.- -.+.|+++|.... +
T Consensus 117 ~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~-~~~-f~a~f~~~Dc~~~~l~d~~e~~d 194 (389)
T KOG1975|consen 117 RGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFK-KFI-FTAVFIAADCFKERLMDLLEFKD 194 (389)
T ss_pred cccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhh-ccc-ceeEEEEeccchhHHHHhccCCC
Confidence 477899999999999988887776 599999999999999999876543321 000 1237888886442 3
Q ss_pred CCccEEEEccccccc-Cc-chHHHHHHHHHhccCCeEEEE-ECCChhh-HHHHH-----HhhccC---------------
Q 020710 218 GKYDTVVCLDVLIHY-PQ-SKADGMIAHLASLAEKRLILS-FAPKTFY-YDLLK-----RVGELF--------------- 273 (322)
Q Consensus 218 ~~fD~V~~~~~l~~~-~~-~~~~~~l~~l~~~~~~~~il~-~~~~~~~-~~~~~-----~~~~~~--------------- 273 (322)
.+||+|-|-.++|+- .. +...-+++.+.+.+++||+++ ..|+... ..-++ .++.-+
T Consensus 195 p~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPdsd~Ii~rlr~~e~~~~gNdiykv~y~~~~~k~~~~ 274 (389)
T KOG1975|consen 195 PRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDSDVIIKRLRAGEVERFGNDIYKVTYEIEFQKEFDV 274 (389)
T ss_pred CCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcHHHHHHHHHhccchhhcceeeeEeeeeecccccCC
Confidence 459999999999763 33 335678899988877766554 4454311 00010 111111
Q ss_pred CCCC----------CccccccCCHHHHHHHHHHCCCEEEEEe
Q 020710 274 PGPS----------KATRAYLHAEADVERALQKVGWKIRKRG 305 (322)
Q Consensus 274 ~~~~----------~~~~~~~~~~~~~~~~l~~aGf~vv~~~ 305 (322)
+... -+...|+..-..+..++++-|++++.+.
T Consensus 275 p~fG~kY~F~LedaVdcPEylV~F~~l~~lae~y~LeLv~~k 316 (389)
T KOG1975|consen 275 PPFGAKYRFHLEDAVDCPEYLVPFPTLVSLAEEYGLELVFVK 316 (389)
T ss_pred CCccceEEEEcccccCCcceeeehHHHHHHHHhcCcEEEEec
Confidence 0000 0123344467789999999999998753
|
|
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=5.4e-09 Score=88.51 Aligned_cols=117 Identities=12% Similarity=0.097 Sum_probs=81.1
Q ss_pred hcCchhHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc-CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCC
Q 020710 127 RLGHSKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ-GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVM 205 (322)
Q Consensus 127 ~~~~~~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~ 205 (322)
|.......+.+++++... .++.+|||+|||+|.++..++.+ ..+|+++|+++.+++.+++++...+..+
T Consensus 34 Rp~~d~v~e~l~~~l~~~--~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~-------- 103 (199)
T PRK10909 34 RPTTDRVRETLFNWLAPV--IVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAGN-------- 103 (199)
T ss_pred CcCCHHHHHHHHHHHhhh--cCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCc--------
Confidence 444555566677777542 24679999999999999865555 4689999999999999999988776532
Q ss_pred CceEEcccccC----CCCccEEEEcccccccCcchHHHHHHHHHhc--cCCeEEEEE
Q 020710 206 PKFEVKDLESL----DGKYDTVVCLDVLIHYPQSKADGMIAHLASL--AEKRLILSF 256 (322)
Q Consensus 206 ~~~~~~d~~~~----~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~--~~~~~il~~ 256 (322)
+.++++|+.+. .++||+|++.--+. ......+++.+... +.++.++.+
T Consensus 104 v~~~~~D~~~~l~~~~~~fDlV~~DPPy~---~g~~~~~l~~l~~~~~l~~~~iv~v 157 (199)
T PRK10909 104 ARVVNTNALSFLAQPGTPHNVVFVDPPFR---KGLLEETINLLEDNGWLADEALIYV 157 (199)
T ss_pred EEEEEchHHHHHhhcCCCceEEEECCCCC---CChHHHHHHHHHHCCCcCCCcEEEE
Confidence 38899997653 35799999865532 11134566666552 344444444
|
|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=9.9e-09 Score=97.95 Aligned_cols=106 Identities=20% Similarity=0.193 Sum_probs=78.6
Q ss_pred CCCCeEEEECCCcccchHHHHhc---CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC----CCC
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQ---GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL----DGK 219 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~~ 219 (322)
.++.+|||+|||+|..+..+++. ..+|+++|+++.+++.+++++...+..+ +.++++|+.+. .++
T Consensus 249 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~--------v~~~~~D~~~~~~~~~~~ 320 (444)
T PRK14902 249 KGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTN--------IETKALDARKVHEKFAEK 320 (444)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCe--------EEEEeCCcccccchhccc
Confidence 35789999999999999999875 4689999999999999999998877643 38899998764 368
Q ss_pred ccEEEEccc------ccccCcc-------h-------HHHHHHHHHhccCCeEEEEECCCh
Q 020710 220 YDTVVCLDV------LIHYPQS-------K-------ADGMIAHLASLAEKRLILSFAPKT 260 (322)
Q Consensus 220 fD~V~~~~~------l~~~~~~-------~-------~~~~l~~l~~~~~~~~il~~~~~~ 260 (322)
||+|++..- +.+-|+. . ...+++...+++++||.+.+...+
T Consensus 321 fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs 381 (444)
T PRK14902 321 FDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCT 381 (444)
T ss_pred CCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCC
Confidence 999997432 2222211 0 135788888877777766654433
|
|
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.4e-09 Score=93.83 Aligned_cols=89 Identities=21% Similarity=0.261 Sum_probs=72.7
Q ss_pred CCCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-CCCccEE
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-DGKYDTV 223 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~fD~V 223 (322)
....+|||||+|.|.++..+++. +.+++..|+ |.+++.+++ .+|+ +++.+|+.+. +. +|+|
T Consensus 99 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~-------~~rv-------~~~~gd~f~~~P~-~D~~ 162 (241)
T PF00891_consen 99 SGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE-------ADRV-------EFVPGDFFDPLPV-ADVY 162 (241)
T ss_dssp TTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH-------TTTE-------EEEES-TTTCCSS-ESEE
T ss_pred cCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc-------cccc-------ccccccHHhhhcc-ccce
Confidence 45678999999999999999987 789999998 888888877 3333 9999999755 55 9999
Q ss_pred EEcccccccCcchHHHHHHHHHhccCCe
Q 020710 224 VCLDVLIHYPQSKADGMIAHLASLAEKR 251 (322)
Q Consensus 224 ~~~~~l~~~~~~~~~~~l~~l~~~~~~~ 251 (322)
++..+||+++++....+|+++++.+++|
T Consensus 163 ~l~~vLh~~~d~~~~~iL~~~~~al~pg 190 (241)
T PF00891_consen 163 LLRHVLHDWSDEDCVKILRNAAAALKPG 190 (241)
T ss_dssp EEESSGGGS-HHHHHHHHHHHHHHSEEC
T ss_pred eeehhhhhcchHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999976543
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.5e-08 Score=90.77 Aligned_cols=104 Identities=15% Similarity=0.105 Sum_probs=73.6
Q ss_pred CCCeEEEECCCcccchHHHHhcC--CEEEEEeCCHHHHHHHHHHh--H---HhhhccCCCCCCCCCceEEcccccC----
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQG--AIVSASDISAAMVAEARKKA--E---EELLADNGGEAPVMPKFEVKDLESL---- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~~--~~v~gvD~s~~~l~~a~~~~--~---~~~~~~~~~~~~~~~~~~~~d~~~~---- 216 (322)
.+.+||+||||+|..+..+++.. .+|+.||++++|++.|++.. . .... .-.+++++.+|+.+.
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~------~DpRV~vvi~Da~~fL~~~ 223 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAF------FDNRVNVHVCDAKEFLSSP 223 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccC------CCCceEEEECcHHHHHHhc
Confidence 46799999999999999898873 68999999999999999621 1 1111 112348889997653
Q ss_pred CCCccEEEEccccc--ccCcch-HHHHHHHHHhccCCeEEEEEC
Q 020710 217 DGKYDTVVCLDVLI--HYPQSK-ADGMIAHLASLAEKRLILSFA 257 (322)
Q Consensus 217 ~~~fD~V~~~~~l~--~~~~~~-~~~~l~~l~~~~~~~~il~~~ 257 (322)
.++||+|++...-. ...... -.++++.+++.++++|++.+.
T Consensus 224 ~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Q 267 (374)
T PRK01581 224 SSLYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQ 267 (374)
T ss_pred CCCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 57899999863210 000111 257889999988888877664
|
|
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.95 E-value=7.6e-09 Score=91.48 Aligned_cols=109 Identities=13% Similarity=0.078 Sum_probs=85.2
Q ss_pred HHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc---CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEc
Q 020710 135 ENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ---GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVK 211 (322)
Q Consensus 135 ~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (322)
..++.++... .++++|||||+++|+.+.++++. +.+|+++|.++++.+.|++++++.+..+++ +++.+
T Consensus 107 g~lL~~L~~~--~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I-------~li~G 177 (278)
T PLN02476 107 AQLLAMLVQI--LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKV-------NVKHG 177 (278)
T ss_pred HHHHHHHHHh--cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcE-------EEEEc
Confidence 3444444443 35789999999999999999874 457999999999999999999999887655 99999
Q ss_pred ccccC---------CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEEC
Q 020710 212 DLESL---------DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFA 257 (322)
Q Consensus 212 d~~~~---------~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~ 257 (322)
|+.+. .++||+|+.- -+......+++.+.+++++|++|.+.
T Consensus 178 dA~e~L~~l~~~~~~~~FD~VFID-----a~K~~Y~~y~e~~l~lL~~GGvIV~D 227 (278)
T PLN02476 178 LAAESLKSMIQNGEGSSYDFAFVD-----ADKRMYQDYFELLLQLVRVGGVIVMD 227 (278)
T ss_pred CHHHHHHHHHhcccCCCCCEEEEC-----CCHHHHHHHHHHHHHhcCCCcEEEEe
Confidence 97552 2689999963 23444678888888888888877664
|
|
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=4.4e-09 Score=94.44 Aligned_cols=97 Identities=21% Similarity=0.161 Sum_probs=71.6
Q ss_pred HHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEccc
Q 020710 134 VENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDL 213 (322)
Q Consensus 134 ~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~ 213 (322)
++++++.+.. .++.+|||||||+|.++..+++.+.+|+++|+++.|++.+++++...+...+ ++++.+|+
T Consensus 25 ~~~Iv~~~~~---~~~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~~~~~-------v~ii~~Da 94 (294)
T PTZ00338 25 LDKIVEKAAI---KPTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSPLASK-------LEVIEGDA 94 (294)
T ss_pred HHHHHHhcCC---CCcCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcCCCCc-------EEEEECCH
Confidence 3455554433 3678999999999999999999988999999999999999998876543222 38999998
Q ss_pred ccC-CCCccEEEEcccccccCcchHHHHH
Q 020710 214 ESL-DGKYDTVVCLDVLIHYPQSKADGMI 241 (322)
Q Consensus 214 ~~~-~~~fD~V~~~~~l~~~~~~~~~~~l 241 (322)
... ...||.|+++.-+ ++..+.+..++
T Consensus 95 l~~~~~~~d~VvaNlPY-~Istpil~~ll 122 (294)
T PTZ00338 95 LKTEFPYFDVCVANVPY-QISSPLVFKLL 122 (294)
T ss_pred hhhcccccCEEEecCCc-ccCcHHHHHHH
Confidence 765 3578998876544 44443333333
|
|
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=98.94 E-value=3.9e-09 Score=97.48 Aligned_cols=114 Identities=17% Similarity=0.221 Sum_probs=82.0
Q ss_pred HHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcc
Q 020710 133 TVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKD 212 (322)
Q Consensus 133 ~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d 212 (322)
+++.+.+++... +.+|||+|||+|.++..+++...+|+|||+++.|++.+++++...++.+ +.|+.+|
T Consensus 186 l~~~v~~~~~~~----~~~vlDl~~G~G~~sl~la~~~~~v~~vE~~~~av~~a~~n~~~~~~~~--------v~~~~~d 253 (353)
T TIGR02143 186 MLEWACEVTQGS----KGDLLELYCGNGNFSLALAQNFRRVLATEIAKPSVNAAQYNIAANNIDN--------VQIIRMS 253 (353)
T ss_pred HHHHHHHHhhcC----CCcEEEEeccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCc--------EEEEEcC
Confidence 344444544322 3479999999999999999887789999999999999999998776543 3899999
Q ss_pred cccC-C------------------CCccEEEEcccccccCcch-HHHHHHHHHhccCCeEEEEECCChhhHH
Q 020710 213 LESL-D------------------GKYDTVVCLDVLIHYPQSK-ADGMIAHLASLAEKRLILSFAPKTFYYD 264 (322)
Q Consensus 213 ~~~~-~------------------~~fD~V~~~~~l~~~~~~~-~~~~l~~l~~~~~~~~il~~~~~~~~~~ 264 (322)
+.+. . ..||+|+. .-|... ...+++.+.+ .+.-++++|.|.++.+|
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~l-----DPPR~G~~~~~l~~l~~-~~~ivYvsC~p~tlaRD 319 (353)
T TIGR02143 254 AEEFTQAMNGVREFRRLKGIDLKSYNCSTIFV-----DPPRAGLDPDTCKLVQA-YERILYISCNPETLKAN 319 (353)
T ss_pred HHHHHHHHhhccccccccccccccCCCCEEEE-----CCCCCCCcHHHHHHHHc-CCcEEEEEcCHHHHHHH
Confidence 7653 1 13798885 344333 2466666665 45666788888877544
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=4.2e-09 Score=99.80 Aligned_cols=108 Identities=21% Similarity=0.246 Sum_probs=79.7
Q ss_pred CCCCeEEEECCCcccchHHHHhc---CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC----CCC
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQ---GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL----DGK 219 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~~ 219 (322)
.++.+|||+|||+|..+..+++. +.+|+++|+|+.+++.+++++...+..+ +.+.+.|+..+ +++
T Consensus 236 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~--------v~~~~~Da~~l~~~~~~~ 307 (431)
T PRK14903 236 EPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSS--------IEIKIADAERLTEYVQDT 307 (431)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCe--------EEEEECchhhhhhhhhcc
Confidence 46789999999999999999876 5689999999999999999998877643 37889997654 578
Q ss_pred ccEEEEcc------cccccCcc--------------hHHHHHHHHHhccCCeEEEEECCChhh
Q 020710 220 YDTVVCLD------VLIHYPQS--------------KADGMIAHLASLAEKRLILSFAPKTFY 262 (322)
Q Consensus 220 fD~V~~~~------~l~~~~~~--------------~~~~~l~~l~~~~~~~~il~~~~~~~~ 262 (322)
||.|++.. ++..-|+- .-.+++.++.+.+++||++.+...++.
T Consensus 308 fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~ 370 (431)
T PRK14903 308 FDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVT 370 (431)
T ss_pred CCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence 99999721 22222210 014567788887777777766554443
|
|
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.94 E-value=7.4e-09 Score=96.01 Aligned_cols=100 Identities=21% Similarity=0.305 Sum_probs=75.1
Q ss_pred CCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC----C-------
Q 020710 149 GIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL----D------- 217 (322)
Q Consensus 149 ~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~----~------- 217 (322)
+.+|||++||+|.++..+++...+|+|||+|+.+++.+++++...++.+ +.|+.+|+.+. .
T Consensus 207 ~~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~ai~~a~~N~~~~~~~~--------v~~~~~d~~~~l~~~~~~~~~~~ 278 (362)
T PRK05031 207 KGDLLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQYNIAANGIDN--------VQIIRMSAEEFTQAMNGVREFNR 278 (362)
T ss_pred CCeEEEEeccccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHHhCCCc--------EEEEECCHHHHHHHHhhcccccc
Confidence 3579999999999999999887789999999999999999988776542 38999998653 1
Q ss_pred --------CCccEEEEcccccccCcch-HHHHHHHHHhccCCeEEEEECCChhh
Q 020710 218 --------GKYDTVVCLDVLIHYPQSK-ADGMIAHLASLAEKRLILSFAPKTFY 262 (322)
Q Consensus 218 --------~~fD~V~~~~~l~~~~~~~-~~~~l~~l~~~~~~~~il~~~~~~~~ 262 (322)
.+||+|+. .-|... ...+++.+.+ .+.-++++|+|.++.
T Consensus 279 ~~~~~~~~~~~D~v~l-----DPPR~G~~~~~l~~l~~-~~~ivyvSC~p~tla 326 (362)
T PRK05031 279 LKGIDLKSYNFSTIFV-----DPPRAGLDDETLKLVQA-YERILYISCNPETLC 326 (362)
T ss_pred cccccccCCCCCEEEE-----CCCCCCCcHHHHHHHHc-cCCEEEEEeCHHHHH
Confidence 14899986 333322 2466666665 455667788776643
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.4e-08 Score=91.61 Aligned_cols=105 Identities=12% Similarity=0.135 Sum_probs=76.9
Q ss_pred CCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEccccc----C-CCCc
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLES----L-DGKY 220 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~----~-~~~f 220 (322)
++.+||+||||.|..+..+++. ..+|+.||+++.+++.+++.+...... ..-.+++++.+|+.. . +++|
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~----~~dpRv~vi~~Da~~~l~~~~~~~y 166 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVG----FDDPRVNLHIGDGVEFLKNAPEGTY 166 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccc----cCCCceEEEEChHHHHHhhccCCCC
Confidence 5789999999999999999988 357999999999999999988653210 011234899999643 2 4689
Q ss_pred cEEEEcccccccCcch--HHHHHHHHHhccCCeEEEEE
Q 020710 221 DTVVCLDVLIHYPQSK--ADGMIAHLASLAEKRLILSF 256 (322)
Q Consensus 221 D~V~~~~~l~~~~~~~--~~~~l~~l~~~~~~~~il~~ 256 (322)
|+|++...-.+.+... -..+++.+++.++++|++..
T Consensus 167 DvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~ 204 (308)
T PLN02366 167 DAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCT 204 (308)
T ss_pred CEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEE
Confidence 9999854433323221 25789999998888877754
|
|
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.92 E-value=4.4e-09 Score=88.69 Aligned_cols=127 Identities=20% Similarity=0.295 Sum_probs=74.5
Q ss_pred HHHHH-HHhhhcCCCCCCeEEEECCCcccch----HHHHh---c--C--CEEEEEeCCHHHHHHHHHHh-----------
Q 020710 134 VENTM-QMLNDEGSLKGIAVCDAGCGTGSLA----IPLAK---Q--G--AIVSASDISAAMVAEARKKA----------- 190 (322)
Q Consensus 134 ~~~~~-~~l~~~~~~~~~~VLDvGcG~G~~~----~~la~---~--~--~~v~gvD~s~~~l~~a~~~~----------- 190 (322)
.+.++ .++......+..+|+.+||++|.-. ..+.+ . + .+++|+|+|+.+++.|++-.
T Consensus 16 ~~~vlp~~~~~~~~~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~ 95 (196)
T PF01739_consen 16 RDEVLPPLLARARPGRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPP 95 (196)
T ss_dssp HHHHH-------CS-S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-H
T ss_pred HHHHHHhhccccCCCCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHH
Confidence 34455 3443332235679999999999843 33334 1 2 58999999999999998622
Q ss_pred ---HHhh--hcc-CCCCC---CCCCceEEcccccC---CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEECC
Q 020710 191 ---EEEL--LAD-NGGEA---PVMPKFEVKDLESL---DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAP 258 (322)
Q Consensus 191 ---~~~~--~~~-~~~~~---~~~~~~~~~d~~~~---~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~ 258 (322)
...- ..+ ...+. ..++.|...|+.+. .+.||+|+|.+||.++.++....+++.+++.+.+||++.+.+
T Consensus 96 ~~~~ryf~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 96 AYLRRYFTERDGGGYRVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGH 175 (196)
T ss_dssp HHHHHHEEEE-CCCTTE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-T
T ss_pred HHHHHhccccCCCceeEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEec
Confidence 0000 000 00000 02458999998773 689999999999999998888899999999999999888765
Q ss_pred Ch
Q 020710 259 KT 260 (322)
Q Consensus 259 ~~ 260 (322)
..
T Consensus 176 sE 177 (196)
T PF01739_consen 176 SE 177 (196)
T ss_dssp T-
T ss_pred Cc
Confidence 43
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=98.92 E-value=9.3e-09 Score=97.59 Aligned_cols=108 Identities=16% Similarity=0.140 Sum_probs=79.3
Q ss_pred CCCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-----CCC
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-----DGK 219 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-----~~~ 219 (322)
.++.+|||+|||+|..+..+++. +.+|+++|+++.+++.+++++...+...++ .+..+|.... .++
T Consensus 237 ~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v-------~~~~~d~~~~~~~~~~~~ 309 (426)
T TIGR00563 237 QNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKA-------ETKDGDGRGPSQWAENEQ 309 (426)
T ss_pred CCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEE-------EEeccccccccccccccc
Confidence 46789999999999999999886 368999999999999999999887654311 3456665432 467
Q ss_pred ccEEEEc------ccccccCcch--------------HHHHHHHHHhccCCeEEEEECCChh
Q 020710 220 YDTVVCL------DVLIHYPQSK--------------ADGMIAHLASLAEKRLILSFAPKTF 261 (322)
Q Consensus 220 fD~V~~~------~~l~~~~~~~--------------~~~~l~~l~~~~~~~~il~~~~~~~ 261 (322)
||.|++. .++++.|+-. -..+|++..+++++||.+.+...++
T Consensus 310 fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~ 371 (426)
T TIGR00563 310 FDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSV 371 (426)
T ss_pred cCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 9999962 3455555411 1468888888888777776654443
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.4e-08 Score=85.73 Aligned_cols=102 Identities=23% Similarity=0.347 Sum_probs=84.4
Q ss_pred hcCCCCCCeEEEECCCcccchHHHHhc---CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--C
Q 020710 143 DEGSLKGIAVCDAGCGTGSLAIPLAKQ---GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL--D 217 (322)
Q Consensus 143 ~~~~~~~~~VLDvGcG~G~~~~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~ 217 (322)
..+..++.+|||.|.|+|.++.+|+.. ..+|+..|+-++..+.|++++.+.++.+++ .+..+|+.+. .
T Consensus 89 ~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v-------~~~~~Dv~~~~~~ 161 (256)
T COG2519 89 RLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRV-------TLKLGDVREGIDE 161 (256)
T ss_pred HcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccce-------EEEeccccccccc
Confidence 334468999999999999999999975 358999999999999999999998887755 8888998775 5
Q ss_pred CCccEEEEcccccccCcchHHHHHHHHHhccCCeEEE-EECC
Q 020710 218 GKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLIL-SFAP 258 (322)
Q Consensus 218 ~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il-~~~~ 258 (322)
..||.|+. .+|+|. .+++++.+++++|+.+ .+.|
T Consensus 162 ~~vDav~L-----Dmp~PW--~~le~~~~~Lkpgg~~~~y~P 196 (256)
T COG2519 162 EDVDAVFL-----DLPDPW--NVLEHVSDALKPGGVVVVYSP 196 (256)
T ss_pred cccCEEEE-----cCCChH--HHHHHHHHHhCCCcEEEEEcC
Confidence 68999995 888876 9999999987665544 4544
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=98.91 E-value=8.6e-09 Score=91.55 Aligned_cols=108 Identities=11% Similarity=0.062 Sum_probs=78.0
Q ss_pred CCCCeEEEECCCcccchHHHHhc---CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC---CCCc
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQ---GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL---DGKY 220 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~f 220 (322)
.++.+|||+|||+|..+..+++. ...|+++|+++.+++.+++++...+..+ +.+...|...+ .+.|
T Consensus 70 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~--------v~~~~~D~~~~~~~~~~f 141 (264)
T TIGR00446 70 DPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLN--------VAVTNFDGRVFGAAVPKF 141 (264)
T ss_pred CCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCc--------EEEecCCHHHhhhhccCC
Confidence 46789999999999999998876 3589999999999999999998876543 37888887654 4679
Q ss_pred cEEEEcc------cccccCcc--------------hHHHHHHHHHhccCCeEEEEECCChhh
Q 020710 221 DTVVCLD------VLIHYPQS--------------KADGMIAHLASLAEKRLILSFAPKTFY 262 (322)
Q Consensus 221 D~V~~~~------~l~~~~~~--------------~~~~~l~~l~~~~~~~~il~~~~~~~~ 262 (322)
|.|++.- ++.+-|+. ...++|+...+++++||++.+...++.
T Consensus 142 D~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~ 203 (264)
T TIGR00446 142 DAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLE 203 (264)
T ss_pred CEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 9999632 22222211 013577788787777776665544433
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.7e-08 Score=89.94 Aligned_cols=106 Identities=12% Similarity=0.083 Sum_probs=75.8
Q ss_pred CCCeEEEECCCcccchHHHHhcC--CEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC----CCCcc
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQG--AIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL----DGKYD 221 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~~fD 221 (322)
.+.+|||||||+|..+..+++.. .+++++|+++++++.+++.+...... ....+++++.+|.... .++||
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~----~~~~~v~i~~~D~~~~l~~~~~~yD 147 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGS----YDDPRVDLQIDDGFKFLADTENTFD 147 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhccc----ccCCceEEEECchHHHHHhCCCCcc
Confidence 35699999999999999888873 57999999999999999987653210 0112237778886542 67899
Q ss_pred EEEEcccccccCcch--HHHHHHHHHhccCCeEEEEEC
Q 020710 222 TVVCLDVLIHYPQSK--ADGMIAHLASLAEKRLILSFA 257 (322)
Q Consensus 222 ~V~~~~~l~~~~~~~--~~~~l~~l~~~~~~~~il~~~ 257 (322)
+|++......-+... ..++++.+++.++++|++.+.
T Consensus 148 vIi~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 148 VIIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred EEEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 999865432222222 357888999888777777654
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.1e-08 Score=97.23 Aligned_cols=104 Identities=19% Similarity=0.082 Sum_probs=75.6
Q ss_pred CCCeEEEECCCcccchHHHHhcC--CEEEEEeCCHHHHHHHHHH--hHHhh---hccCCCCCCCCCceEEcccccC----
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQG--AIVSASDISAAMVAEARKK--AEEEL---LADNGGEAPVMPKFEVKDLESL---- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~~--~~v~gvD~s~~~l~~a~~~--~~~~~---~~~~~~~~~~~~~~~~~d~~~~---- 216 (322)
++++|||||||+|..+..+++++ .+|++||+++++++.++++ +.+.. ..+ .+++++.+|+.+.
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~d------prv~vi~~Da~~~l~~~ 370 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDD------PRVTVVNDDAFNWLRKL 370 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCC------CceEEEEChHHHHHHhC
Confidence 56899999999999999998874 5899999999999999983 32211 111 2238889997663
Q ss_pred CCCccEEEEcccccccCcc-h--HHHHHHHHHhccCCeEEEEEC
Q 020710 217 DGKYDTVVCLDVLIHYPQS-K--ADGMIAHLASLAEKRLILSFA 257 (322)
Q Consensus 217 ~~~fD~V~~~~~l~~~~~~-~--~~~~l~~l~~~~~~~~il~~~ 257 (322)
+++||+|++...-...+.. . -.++++.+++.++++|++.+.
T Consensus 371 ~~~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~ 414 (521)
T PRK03612 371 AEKFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQ 414 (521)
T ss_pred CCCCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEe
Confidence 5799999987543222211 1 146888999988888877664
|
|
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.89 E-value=9e-09 Score=88.63 Aligned_cols=102 Identities=25% Similarity=0.265 Sum_probs=81.3
Q ss_pred chhhhhhcCchhHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccC
Q 020710 121 RVQLDIRLGHSKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADN 198 (322)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~ 198 (322)
.....+||.++..++.+++.+....-..+..|||+|||+|..+..++.. .+.|++||.|+.++..|.+++....+.++
T Consensus 121 pgVlIPRpETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~ 200 (328)
T KOG2904|consen 121 PGVLIPRPETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGR 200 (328)
T ss_pred CCeeecCccHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCc
Confidence 3455678889999999999988764345668999999999999988876 67899999999999999999999888875
Q ss_pred CCCCCCCCceEEcccc----cC----CCCccEEEEcccc
Q 020710 199 GGEAPVMPKFEVKDLE----SL----DGKYDTVVCLDVL 229 (322)
Q Consensus 199 ~~~~~~~~~~~~~d~~----~~----~~~fD~V~~~~~l 229 (322)
+ ..+..+++ .. .+++|+++|+--.
T Consensus 201 i-------~v~~~~me~d~~~~~~l~~~~~dllvsNPPY 232 (328)
T KOG2904|consen 201 I-------EVIHNIMESDASDEHPLLEGKIDLLVSNPPY 232 (328)
T ss_pred e-------EEEecccccccccccccccCceeEEecCCCc
Confidence 4 44433322 22 6999999998753
|
|
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=98.88 E-value=8.4e-09 Score=95.25 Aligned_cols=115 Identities=25% Similarity=0.374 Sum_probs=77.4
Q ss_pred hhHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEE
Q 020710 131 SKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEV 210 (322)
Q Consensus 131 ~~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~ 210 (322)
+.+++.+++++... +.+|||+-||.|.++..|++...+|+|||+++.+++.|++++..+++.+ ++|+.
T Consensus 183 ~~l~~~~~~~l~~~----~~~vlDlycG~G~fsl~la~~~~~V~gvE~~~~av~~A~~Na~~N~i~n--------~~f~~ 250 (352)
T PF05958_consen 183 EKLYEQALEWLDLS----KGDVLDLYCGVGTFSLPLAKKAKKVIGVEIVEEAVEDARENAKLNGIDN--------VEFIR 250 (352)
T ss_dssp HHHHHHHHHHCTT-----TTEEEEES-TTTCCHHHHHCCSSEEEEEES-HHHHHHHHHHHHHTT--S--------EEEEE
T ss_pred HHHHHHHHHHhhcC----CCcEEEEeecCCHHHHHHHhhCCeEEEeeCCHHHHHHHHHHHHHcCCCc--------ceEEE
Confidence 35566677777654 3489999999999999999999999999999999999999999888765 48888
Q ss_pred cccccC-------------------CCCccEEEEcccccccCcchH-HHHHHHHHhccCCeEEEEECCChhhH
Q 020710 211 KDLESL-------------------DGKYDTVVCLDVLIHYPQSKA-DGMIAHLASLAEKRLILSFAPKTFYY 263 (322)
Q Consensus 211 ~d~~~~-------------------~~~fD~V~~~~~l~~~~~~~~-~~~l~~l~~~~~~~~il~~~~~~~~~ 263 (322)
+++++. ...+|+|+. .-|...+ ..+++.+.+ .+.-++++|+|.++.+
T Consensus 251 ~~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~vil-----DPPR~G~~~~~~~~~~~-~~~ivYvSCnP~tlaR 317 (352)
T PF05958_consen 251 GDAEDFAKALAKAREFNRLKGIDLKSFKFDAVIL-----DPPRAGLDEKVIELIKK-LKRIVYVSCNPATLAR 317 (352)
T ss_dssp --SHHCCCHHCCS-GGTTGGGS-GGCTTESEEEE--------TT-SCHHHHHHHHH-SSEEEEEES-HHHHHH
T ss_pred eeccchhHHHHhhHHHHhhhhhhhhhcCCCEEEE-----cCCCCCchHHHHHHHhc-CCeEEEEECCHHHHHH
Confidence 776543 125788874 4554433 245555554 3566788898877643
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.2e-08 Score=86.84 Aligned_cols=109 Identities=14% Similarity=0.119 Sum_probs=84.0
Q ss_pred HHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc---CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEE-
Q 020710 135 ENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ---GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEV- 210 (322)
Q Consensus 135 ~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~- 210 (322)
..++.++... ..+++|||||.+.|+.+.+++.. ..+++.+|+++++.+.|++++.+.+..+++ ..+.
T Consensus 48 g~~L~~L~~~--~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i-------~~~~~ 118 (219)
T COG4122 48 GALLRLLARL--SGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRI-------ELLLG 118 (219)
T ss_pred HHHHHHHHHh--cCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceE-------EEEec
Confidence 3444444443 35789999999999999999876 358999999999999999999999998755 6777
Q ss_pred cccccC-----CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEEC
Q 020710 211 KDLESL-----DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFA 257 (322)
Q Consensus 211 ~d~~~~-----~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~ 257 (322)
+|..+. .++||+|+.- -.......++..+.+++.+|+++.+.
T Consensus 119 gdal~~l~~~~~~~fDliFID-----adK~~yp~~le~~~~lLr~GGliv~D 165 (219)
T COG4122 119 GDALDVLSRLLDGSFDLVFID-----ADKADYPEYLERALPLLRPGGLIVAD 165 (219)
T ss_pred CcHHHHHHhccCCCccEEEEe-----CChhhCHHHHHHHHHHhCCCcEEEEe
Confidence 475443 6899999962 23333568888888888777777653
|
|
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.2e-08 Score=90.36 Aligned_cols=83 Identities=22% Similarity=0.233 Sum_probs=65.9
Q ss_pred HHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEccc
Q 020710 134 VENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDL 213 (322)
Q Consensus 134 ~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~ 213 (322)
++++++.+.. .++.+|||||||+|.++..+++.+.+|+++|+++.|++.+++++... .+ ++++++|+
T Consensus 18 ~~~iv~~~~~---~~~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~~~~~~~---~~-------v~ii~~D~ 84 (258)
T PRK14896 18 VDRIVEYAED---TDGDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRDDEIAA---GN-------VEIIEGDA 84 (258)
T ss_pred HHHHHHhcCC---CCcCeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHhccC---CC-------EEEEEecc
Confidence 4555555433 35789999999999999999999889999999999999999887541 11 38999999
Q ss_pred ccC-CCCccEEEEcccc
Q 020710 214 ESL-DGKYDTVVCLDVL 229 (322)
Q Consensus 214 ~~~-~~~fD~V~~~~~l 229 (322)
.+. ...||.|+++-.+
T Consensus 85 ~~~~~~~~d~Vv~NlPy 101 (258)
T PRK14896 85 LKVDLPEFNKVVSNLPY 101 (258)
T ss_pred ccCCchhceEEEEcCCc
Confidence 876 3568999987664
|
|
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=98.87 E-value=3.5e-08 Score=83.07 Aligned_cols=114 Identities=10% Similarity=0.099 Sum_probs=80.2
Q ss_pred HHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCC-EEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEc
Q 020710 133 TVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGA-IVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVK 211 (322)
Q Consensus 133 ~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (322)
..+.+..++... .++.+|||++||+|.++..++.+|+ +|++||.++.+++.+++++...+..+++ +++.+
T Consensus 36 vrea~f~~l~~~--~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~-------~~~~~ 106 (189)
T TIGR00095 36 VRELFFNILRPE--IQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQA-------EVVRN 106 (189)
T ss_pred HHHHHHHHHHHh--cCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccE-------EEEeh
Confidence 334555655432 3578999999999999999999987 7999999999999999999887665433 88999
Q ss_pred ccccC------CC-CccEEEEcccccccCcchHHHHHHHHHh--ccCCeEEEEECC
Q 020710 212 DLESL------DG-KYDTVVCLDVLIHYPQSKADGMIAHLAS--LAEKRLILSFAP 258 (322)
Q Consensus 212 d~~~~------~~-~fD~V~~~~~l~~~~~~~~~~~l~~l~~--~~~~~~il~~~~ 258 (322)
|+... .. .||+|+.---+.. .....++..+.. ++++++++.+.+
T Consensus 107 D~~~~l~~~~~~~~~~dvv~~DPPy~~---~~~~~~l~~l~~~~~l~~~~iiv~E~ 159 (189)
T TIGR00095 107 SALRALKFLAKKPTFDNVIYLDPPFFN---GALQALLELCENNWILEDTVLIVVEE 159 (189)
T ss_pred hHHHHHHHhhccCCCceEEEECcCCCC---CcHHHHHHHHHHCCCCCCCeEEEEEe
Confidence 98442 22 3677776544321 124455665544 466777776643
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.6e-07 Score=84.97 Aligned_cols=141 Identities=11% Similarity=0.093 Sum_probs=91.4
Q ss_pred HHHhchhhHHHHHHHhcCCCcccchhhhhhcCchhHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc------CC
Q 020710 98 REYFNNSGFQRWKKIYGETDDVNRVQLDIRLGHSKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ------GA 171 (322)
Q Consensus 98 ~~~f~~~~~~~w~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~------~~ 171 (322)
+-+||..+-+-|.++....+.+.. ..+. .+++.....|... ..++..|+|+|||.|.=+..|.+. ..
T Consensus 33 k~~YD~~Gs~LFe~It~lpEYYpt-r~E~-----~iL~~~~~~Ia~~-i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~ 105 (319)
T TIGR03439 33 LLLYDDEGLKLFEEITYSPEYYLT-NDEI-----EILKKHSSDIAAS-IPSGSMLVELGSGNLRKVGILLEALERQKKSV 105 (319)
T ss_pred HhhhcchHHHHHHHHHcCCccCCh-HHHH-----HHHHHHHHHHHHh-cCCCCEEEEECCCchHHHHHHHHHHHhcCCCc
Confidence 468888888888887654333222 1111 1122222222221 124568999999999987766543 46
Q ss_pred EEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC---------CCCccEEEEcc-cccccCcchHHHHH
Q 020710 172 IVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL---------DGKYDTVVCLD-VLIHYPQSKADGMI 241 (322)
Q Consensus 172 ~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---------~~~fD~V~~~~-~l~~~~~~~~~~~l 241 (322)
.++++|+|.++++.+.+++....... ..+.-+++|+.+. .....+|+... ++.++++++...+|
T Consensus 106 ~Y~plDIS~~~L~~a~~~L~~~~~p~------l~v~~l~gdy~~~l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL 179 (319)
T TIGR03439 106 DYYALDVSRSELQRTLAELPLGNFSH------VRCAGLLGTYDDGLAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFL 179 (319)
T ss_pred eEEEEECCHHHHHHHHHhhhhccCCC------eEEEEEEecHHHHHhhcccccccCCccEEEEeCccccCCCHHHHHHHH
Confidence 79999999999999999887222111 1124477777442 23467777665 89999998899999
Q ss_pred HHHHh-ccCCe
Q 020710 242 AHLAS-LAEKR 251 (322)
Q Consensus 242 ~~l~~-~~~~~ 251 (322)
+.+++ .++++
T Consensus 180 ~~~~~~~l~~~ 190 (319)
T TIGR03439 180 AGFLATALSPS 190 (319)
T ss_pred HHHHHhhCCCC
Confidence 99998 65433
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=98.85 E-value=9.3e-08 Score=83.33 Aligned_cols=121 Identities=25% Similarity=0.285 Sum_probs=90.1
Q ss_pred CCCCCeEEEECCCcccchHHHHhc---CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC------
Q 020710 146 SLKGIAVCDAGCGTGSLAIPLAKQ---GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL------ 216 (322)
Q Consensus 146 ~~~~~~VLDvGcG~G~~~~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~------ 216 (322)
..++.+|||.|.|+|.++..|+.. ..+|+..|+.++..+.|++++...++...+ .+...|+...
T Consensus 38 i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v-------~~~~~Dv~~~g~~~~~ 110 (247)
T PF08704_consen 38 IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNV-------TVHHRDVCEEGFDEEL 110 (247)
T ss_dssp --TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTE-------EEEES-GGCG--STT-
T ss_pred CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCc-------eeEecceecccccccc
Confidence 458999999999999999999976 358999999999999999999998886544 8899998532
Q ss_pred CCCccEEEEcccccccCcchHHHHHHHHHhcc-CCeE-EEEECCChhhHHHHHHhhccCCCCCCccccccCCHHHHHHHH
Q 020710 217 DGKYDTVVCLDVLIHYPQSKADGMIAHLASLA-EKRL-ILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADVERAL 294 (322)
Q Consensus 217 ~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~-~~~~-il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 294 (322)
+..+|.|+. .+|+|. ..+.++.+.+ ++|+ ++.+.|.-. ......+.|
T Consensus 111 ~~~~DavfL-----Dlp~Pw--~~i~~~~~~L~~~gG~i~~fsP~ie------------------------Qv~~~~~~L 159 (247)
T PF08704_consen 111 ESDFDAVFL-----DLPDPW--EAIPHAKRALKKPGGRICCFSPCIE------------------------QVQKTVEAL 159 (247)
T ss_dssp TTSEEEEEE-----ESSSGG--GGHHHHHHHE-EEEEEEEEEESSHH------------------------HHHHHHHHH
T ss_pred cCcccEEEE-----eCCCHH--HHHHHHHHHHhcCCceEEEECCCHH------------------------HHHHHHHHH
Confidence 467999985 888877 8888888877 5555 455555321 134556778
Q ss_pred HHCCCEEEEE
Q 020710 295 QKVGWKIRKR 304 (322)
Q Consensus 295 ~~aGf~vv~~ 304 (322)
++.||..++.
T Consensus 160 ~~~gf~~i~~ 169 (247)
T PF08704_consen 160 REHGFTDIET 169 (247)
T ss_dssp HHTTEEEEEE
T ss_pred HHCCCeeeEE
Confidence 8899987763
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.3e-08 Score=90.77 Aligned_cols=82 Identities=23% Similarity=0.232 Sum_probs=63.0
Q ss_pred HHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcc
Q 020710 133 TVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKD 212 (322)
Q Consensus 133 ~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d 212 (322)
..+.+++.+.. .++.+|||||||+|.++..+++.+.+|+|+|+++.|++.+++++.. .+ ++++++|
T Consensus 30 i~~~i~~~l~~---~~~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~~~~~~----~~-------v~~i~~D 95 (272)
T PRK00274 30 ILDKIVDAAGP---QPGDNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILAETFAE----DN-------LTIIEGD 95 (272)
T ss_pred HHHHHHHhcCC---CCcCeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHHHhhcc----Cc-------eEEEECh
Confidence 34555565543 3578999999999999999999988999999999999999887643 12 2899999
Q ss_pred cccCC-CC--ccEEEEccc
Q 020710 213 LESLD-GK--YDTVVCLDV 228 (322)
Q Consensus 213 ~~~~~-~~--fD~V~~~~~ 228 (322)
+.+.+ .. +|.|+++--
T Consensus 96 ~~~~~~~~~~~~~vv~NlP 114 (272)
T PRK00274 96 ALKVDLSELQPLKVVANLP 114 (272)
T ss_pred hhcCCHHHcCcceEEEeCC
Confidence 88762 22 478887644
|
|
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.5e-07 Score=78.73 Aligned_cols=136 Identities=21% Similarity=0.299 Sum_probs=87.8
Q ss_pred chhHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceE
Q 020710 130 HSKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFE 209 (322)
Q Consensus 130 ~~~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~ 209 (322)
...-++.++++|... .+...|-|+|||.+.++..+ ..+..|...|+-.. +..+.
T Consensus 56 P~nPvd~iI~~l~~~--~~~~viaD~GCGdA~la~~~-~~~~~V~SfDLva~-----------------------n~~Vt 109 (219)
T PF05148_consen 56 PVNPVDVIIEWLKKR--PKSLVIADFGCGDAKLAKAV-PNKHKVHSFDLVAP-----------------------NPRVT 109 (219)
T ss_dssp SS-HHHHHHHHHCTS---TTS-EEEES-TT-HHHHH---S---EEEEESS-S-----------------------STTEE
T ss_pred CCCcHHHHHHHHHhc--CCCEEEEECCCchHHHHHhc-ccCceEEEeeccCC-----------------------CCCEE
Confidence 445568899999875 34579999999999998654 34567999998531 11678
Q ss_pred EcccccC---CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCCCCCccccccCC
Q 020710 210 VKDLESL---DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHA 286 (322)
Q Consensus 210 ~~d~~~~---~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (322)
.+|+... +++.|+++++-+|... + +..++++..|+++++|++.+..-.. . +-+
T Consensus 110 acdia~vPL~~~svDv~VfcLSLMGT-n--~~~fi~EA~RvLK~~G~L~IAEV~S----------R-----------f~~ 165 (219)
T PF05148_consen 110 ACDIANVPLEDESVDVAVFCLSLMGT-N--WPDFIREANRVLKPGGILKIAEVKS----------R-----------FEN 165 (219)
T ss_dssp ES-TTS-S--TT-EEEEEEES---SS----HHHHHHHHHHHEEEEEEEEEEEEGG----------G------------S-
T ss_pred EecCccCcCCCCceeEEEEEhhhhCC-C--cHHHHHHHHheeccCcEEEEEEecc----------c-----------CcC
Confidence 8898775 7999999998887543 3 7799999999998888776532111 1 225
Q ss_pred HHHHHHHHHHCCCEEEEEeeeecceehhh
Q 020710 287 EADVERALQKVGWKIRKRGLITTQFYFAR 315 (322)
Q Consensus 287 ~~~~~~~l~~aGf~vv~~~~~~~~~~f~~ 315 (322)
.+.+.+.+++.||++...+..+..|++-.
T Consensus 166 ~~~F~~~~~~~GF~~~~~d~~n~~F~~f~ 194 (219)
T PF05148_consen 166 VKQFIKALKKLGFKLKSKDESNKHFVLFE 194 (219)
T ss_dssp HHHHHHHHHCTTEEEEEEE--STTEEEEE
T ss_pred HHHHHHHHHHCCCeEEecccCCCeEEEEE
Confidence 78899999999999999888777666543
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=5.8e-08 Score=87.84 Aligned_cols=77 Identities=19% Similarity=0.292 Sum_probs=59.5
Q ss_pred CCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHh-hhccCCCCCCCCCceEE-ccccc-------C
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEE-LLADNGGEAPVMPKFEV-KDLES-------L 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~-~~~~~~~~~~~~~~~~~-~d~~~-------~ 216 (322)
++.++||||||+|.....++.. +++++|+|+++.+++.|++++... ++.+++ .+.. .|..+ .
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I-------~~~~~~~~~~i~~~i~~~ 186 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAI-------RLRLQKDSKAIFKGIIHK 186 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcE-------EEEEccchhhhhhccccc
Confidence 4679999999999887777655 889999999999999999999887 566543 5543 23221 1
Q ss_pred CCCccEEEEcccccc
Q 020710 217 DGKYDTVVCLDVLIH 231 (322)
Q Consensus 217 ~~~fD~V~~~~~l~~ 231 (322)
.+.||+|+|+--++.
T Consensus 187 ~~~fDlivcNPPf~~ 201 (321)
T PRK11727 187 NERFDATLCNPPFHA 201 (321)
T ss_pred CCceEEEEeCCCCcC
Confidence 468999999987643
|
|
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=3.9e-08 Score=87.63 Aligned_cols=112 Identities=21% Similarity=0.291 Sum_probs=81.3
Q ss_pred CCeEEEECCCcccch----HHHHhc------CCEEEEEeCCHHHHHHHHHHhHH-h---h---------h------c-c-
Q 020710 149 GIAVCDAGCGTGSLA----IPLAKQ------GAIVSASDISAAMVAEARKKAEE-E---L---------L------A-D- 197 (322)
Q Consensus 149 ~~~VLDvGcG~G~~~----~~la~~------~~~v~gvD~s~~~l~~a~~~~~~-~---~---------~------~-~- 197 (322)
..+|+..||+||.-. ..+.+. ..+|+|+|||+.+++.|++-.-. . + . . +
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 479999999999843 333332 35799999999999999864210 0 0 0 0 0
Q ss_pred -CCCCC-CCCCceEEcccccC----CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEECCCh
Q 020710 198 -NGGEA-PVMPKFEVKDLESL----DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKT 260 (322)
Q Consensus 198 -~~~~~-~~~~~~~~~d~~~~----~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~ 260 (322)
+++.. ...+.|...|+.+. .+.||+|+|.+++.|+.++....+++.+.+.+++||++.+.+..
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~sE 264 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGHSE 264 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeCcc
Confidence 01001 13468999998763 47899999999999998887889999999999888888776543
|
|
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=98.77 E-value=5.2e-08 Score=80.94 Aligned_cols=93 Identities=24% Similarity=0.287 Sum_probs=63.1
Q ss_pred CCCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhh--hccCCCCCCCCCceEEcccccC------
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEEL--LADNGGEAPVMPKFEVKDLESL------ 216 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~--~~~~~~~~~~~~~~~~~d~~~~------ 216 (322)
.++.+|||+|||+|..+..++.. +.+|+..|.++ .++..+.++..++ ...+ +.+...|..+.
T Consensus 44 ~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~-------v~v~~L~Wg~~~~~~~~ 115 (173)
T PF10294_consen 44 FRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGR-------VSVRPLDWGDELDSDLL 115 (173)
T ss_dssp TTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT---------------EEEE--TTS-HHHHHH
T ss_pred cCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhcccccccc-------ccCcEEEecCccccccc
Confidence 46789999999999999999998 67899999999 9999988887655 2222 26777765442
Q ss_pred -CCCccEEEEcccccccCcchHHHHHHHHHhccC
Q 020710 217 -DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAE 249 (322)
Q Consensus 217 -~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~ 249 (322)
..+||+|+++++++.- +....+++.+.+++.
T Consensus 116 ~~~~~D~IlasDv~Y~~--~~~~~L~~tl~~ll~ 147 (173)
T PF10294_consen 116 EPHSFDVILASDVLYDE--ELFEPLVRTLKRLLK 147 (173)
T ss_dssp S-SSBSEEEEES--S-G--GGHHHHHHHHHHHBT
T ss_pred ccccCCEEEEecccchH--HHHHHHHHHHHHHhC
Confidence 4689999999999753 336788888888753
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=98.77 E-value=5.5e-08 Score=85.91 Aligned_cols=106 Identities=22% Similarity=0.232 Sum_probs=71.8
Q ss_pred HHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcc
Q 020710 133 TVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKD 212 (322)
Q Consensus 133 ~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d 212 (322)
.++++++.+.. .++.+|||||||+|.++..+++.+.+|+++|+++.|++.+++++.. ..+ ++++.+|
T Consensus 17 i~~~i~~~~~~---~~~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~~~~~~l~~~~~~---~~~-------v~v~~~D 83 (253)
T TIGR00755 17 VIQKIVEAANV---LEGDVVLEIGPGLGALTEPLLKRAKKVTAIEIDPRLAEILRKLLSL---YER-------LEVIEGD 83 (253)
T ss_pred HHHHHHHhcCC---CCcCEEEEeCCCCCHHHHHHHHhCCcEEEEECCHHHHHHHHHHhCc---CCc-------EEEEECc
Confidence 34555555543 3578999999999999999999988899999999999999877643 111 2788999
Q ss_pred cccCC-CCcc---EEEEcccccccCcchHHHHHHHHHh-ccCCeEEEEE
Q 020710 213 LESLD-GKYD---TVVCLDVLIHYPQSKADGMIAHLAS-LAEKRLILSF 256 (322)
Q Consensus 213 ~~~~~-~~fD---~V~~~~~l~~~~~~~~~~~l~~l~~-~~~~~~il~~ 256 (322)
+...+ ..|| .|+++-.+ |+.. .++..+.. ....+.++.+
T Consensus 84 ~~~~~~~~~d~~~~vvsNlPy-~i~~----~il~~ll~~~~~~~~~~~~ 127 (253)
T TIGR00755 84 ALKVDLPDFPKQLKVVSNLPY-NISS----PLIFKLLEKPKFRLAVLMV 127 (253)
T ss_pred hhcCChhHcCCcceEEEcCCh-hhHH----HHHHHHhccCCCceEEEEe
Confidence 87763 3466 66654432 3333 44444442 2233444444
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.7e-07 Score=80.25 Aligned_cols=135 Identities=18% Similarity=0.285 Sum_probs=99.7
Q ss_pred chhHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceE
Q 020710 130 HSKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFE 209 (322)
Q Consensus 130 ~~~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~ 209 (322)
...-++.+++.|... .....|.|+|||.+.++. .....|...|+-+. +-.++
T Consensus 164 P~nPld~ii~~ik~r--~~~~vIaD~GCGEakiA~---~~~~kV~SfDL~a~-----------------------~~~V~ 215 (325)
T KOG3045|consen 164 PENPLDVIIRKIKRR--PKNIVIADFGCGEAKIAS---SERHKVHSFDLVAV-----------------------NERVI 215 (325)
T ss_pred CCChHHHHHHHHHhC--cCceEEEecccchhhhhh---ccccceeeeeeecC-----------------------CCcee
Confidence 445568888888876 456789999999998765 33456888887321 11678
Q ss_pred EcccccC---CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCCCCCccccccCC
Q 020710 210 VKDLESL---DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHA 286 (322)
Q Consensus 210 ~~d~~~~---~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (322)
.+|+... +++.|+++++.+|.- .+ +..++++..|+++.||++.+..-. . .+.+
T Consensus 216 ~cDm~~vPl~d~svDvaV~CLSLMg-tn--~~df~kEa~RiLk~gG~l~IAEv~----------S-----------Rf~d 271 (325)
T KOG3045|consen 216 ACDMRNVPLEDESVDVAVFCLSLMG-TN--LADFIKEANRILKPGGLLYIAEVK----------S-----------RFSD 271 (325)
T ss_pred eccccCCcCccCcccEEEeeHhhhc-cc--HHHHHHHHHHHhccCceEEEEehh----------h-----------hccc
Confidence 8888775 799999998877743 33 789999999999888877553211 1 1235
Q ss_pred HHHHHHHHHHCCCEEEEEeeeecceehhhh
Q 020710 287 EADVERALQKVGWKIRKRGLITTQFYFARL 316 (322)
Q Consensus 287 ~~~~~~~l~~aGf~vv~~~~~~~~~~f~~~ 316 (322)
...+.+.|...||.+...+..+..|++=.+
T Consensus 272 v~~f~r~l~~lGF~~~~~d~~n~~F~lfef 301 (325)
T KOG3045|consen 272 VKGFVRALTKLGFDVKHKDVSNKYFTLFEF 301 (325)
T ss_pred HHHHHHHHHHcCCeeeehhhhcceEEEEEE
Confidence 677999999999999999988888776443
|
|
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.75 E-value=4.7e-08 Score=76.27 Aligned_cols=88 Identities=24% Similarity=0.343 Sum_probs=70.5
Q ss_pred HHHHHHHHhhhc-CCCCCCeEEEECCCcccchHHHHhcCC-EEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEE
Q 020710 133 TVENTMQMLNDE-GSLKGIAVCDAGCGTGSLAIPLAKQGA-IVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEV 210 (322)
Q Consensus 133 ~~~~~~~~l~~~-~~~~~~~VLDvGcG~G~~~~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~ 210 (322)
....++..|... +.-++++++|+|||.|-++....-.+. .|+|+||++++++.++++..+..+.+ ++.+
T Consensus 32 iAasM~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvqi---------dlLq 102 (185)
T KOG3420|consen 32 IAASMLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQI---------DLLQ 102 (185)
T ss_pred HHHHHHHHHHhhhccccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhhhh---------heee
Confidence 345555555442 345789999999999999977766655 49999999999999999999887765 8999
Q ss_pred cccccC---CCCccEEEEcccc
Q 020710 211 KDLESL---DGKYDTVVCLDVL 229 (322)
Q Consensus 211 ~d~~~~---~~~fD~V~~~~~l 229 (322)
+|+.++ .+.||.++.+.-+
T Consensus 103 cdildle~~~g~fDtaviNppF 124 (185)
T KOG3420|consen 103 CDILDLELKGGIFDTAVINPPF 124 (185)
T ss_pred eeccchhccCCeEeeEEecCCC
Confidence 998876 6889999987655
|
|
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.75 E-value=7.8e-08 Score=84.01 Aligned_cols=109 Identities=14% Similarity=0.107 Sum_probs=84.2
Q ss_pred HHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc---CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcc
Q 020710 136 NTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ---GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKD 212 (322)
Q Consensus 136 ~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d 212 (322)
.++..+... .+..+|||||+++|+.+.++++. +.+++.+|++++..+.|++.+.+.+..+++ +++.+|
T Consensus 69 ~lL~~l~~~--~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I-------~~~~G~ 139 (247)
T PLN02589 69 QFLNMLLKL--INAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKI-------DFREGP 139 (247)
T ss_pred HHHHHHHHH--hCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCce-------EEEecc
Confidence 444444332 24679999999999999999875 568999999999999999999999887665 999999
Q ss_pred cccC----------CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEECC
Q 020710 213 LESL----------DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAP 258 (322)
Q Consensus 213 ~~~~----------~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~ 258 (322)
+.+. .++||+|+.-. . .......++.+.+++.+|++|.+..
T Consensus 140 a~e~L~~l~~~~~~~~~fD~iFiDa----d-K~~Y~~y~~~~l~ll~~GGviv~DN 190 (247)
T PLN02589 140 ALPVLDQMIEDGKYHGTFDFIFVDA----D-KDNYINYHKRLIDLVKVGGVIGYDN 190 (247)
T ss_pred HHHHHHHHHhccccCCcccEEEecC----C-HHHhHHHHHHHHHhcCCCeEEEEcC
Confidence 7653 26899999642 2 3335677888778888888877643
|
|
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.74 E-value=3.6e-08 Score=83.35 Aligned_cols=101 Identities=26% Similarity=0.266 Sum_probs=75.0
Q ss_pred CCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC------CCCc
Q 020710 149 GIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL------DGKY 220 (322)
Q Consensus 149 ~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~------~~~f 220 (322)
...+||||||.|.++..+|.. ...++|+|++...+..+.+++...++.| +.++++|+... ++++
T Consensus 18 ~~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~N--------v~~~~~da~~~l~~~~~~~~v 89 (195)
T PF02390_consen 18 NPLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKN--------VRFLRGDARELLRRLFPPGSV 89 (195)
T ss_dssp CEEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSS--------EEEEES-CTTHHHHHSTTTSE
T ss_pred CCeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccc--------eEEEEccHHHHHhhcccCCch
Confidence 348999999999999999987 6789999999999999999998887755 58899998773 6899
Q ss_pred cEEEEcccccccCcch------HHHHHHHHHhccCCeEEEEEC
Q 020710 221 DTVVCLDVLIHYPQSK------ADGMIAHLASLAEKRLILSFA 257 (322)
Q Consensus 221 D~V~~~~~l~~~~~~~------~~~~l~~l~~~~~~~~il~~~ 257 (322)
|-|+....=-|..... -..+++.+.+++++||.+.+.
T Consensus 90 ~~i~i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~ 132 (195)
T PF02390_consen 90 DRIYINFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFA 132 (195)
T ss_dssp EEEEEES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEE
T ss_pred heEEEeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEE
Confidence 9999643322221111 268899999988887777654
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.9e-08 Score=83.68 Aligned_cols=91 Identities=18% Similarity=0.117 Sum_probs=62.3
Q ss_pred CCCCeEEEECCCcccchHHHHhc---CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-------
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQ---GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL------- 216 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~------- 216 (322)
.++.+|||+|||+|.++..+++. ..+|+++|+|+.+ .. . .+.+.++|+.+.
T Consensus 31 ~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~------~~-----~--------~i~~~~~d~~~~~~~~~l~ 91 (188)
T TIGR00438 31 KPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK------PI-----E--------NVDFIRGDFTDEEVLNKIR 91 (188)
T ss_pred CCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc------cC-----C--------CceEEEeeCCChhHHHHHH
Confidence 46789999999999999988876 3479999999864 10 1 127777787542
Q ss_pred ----CCCccEEEEcccc--------cccCc-chHHHHHHHHHhccCCeEEEEE
Q 020710 217 ----DGKYDTVVCLDVL--------IHYPQ-SKADGMIAHLASLAEKRLILSF 256 (322)
Q Consensus 217 ----~~~fD~V~~~~~l--------~~~~~-~~~~~~l~~l~~~~~~~~il~~ 256 (322)
.++||+|++.... .|+.. .....+++.+.+++++||.+.+
T Consensus 92 ~~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi 144 (188)
T TIGR00438 92 ERVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVV 144 (188)
T ss_pred HHhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEE
Confidence 4679999986532 11111 1135788888887766665544
|
|
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.73 E-value=8.8e-08 Score=76.69 Aligned_cols=110 Identities=18% Similarity=0.264 Sum_probs=86.1
Q ss_pred hhHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCC---EEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCc
Q 020710 131 SKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGA---IVSASDISAAMVAEARKKAEEELLADNGGEAPVMPK 207 (322)
Q Consensus 131 ~~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~ 207 (322)
..+.+++.+.+... .+.-|||+|.|||.++..+.++|. .+++++.|++.+....+++... +
T Consensus 34 s~lA~~M~s~I~pe---sglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~-------------~ 97 (194)
T COG3963 34 SILARKMASVIDPE---SGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGV-------------N 97 (194)
T ss_pred HHHHHHHHhccCcc---cCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCc-------------c
Confidence 34556666666654 677999999999999999999954 5999999999999998887653 6
Q ss_pred eEEcccccC--------CCCccEEEEcccccccCcchHHHHHHHHHhccCCeE-EEEE
Q 020710 208 FEVKDLESL--------DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRL-ILSF 256 (322)
Q Consensus 208 ~~~~d~~~~--------~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~-il~~ 256 (322)
++.+|+.++ +..||.|+|.--+-.+|.....++++.+...++.|+ ++.+
T Consensus 98 ii~gda~~l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqf 155 (194)
T COG3963 98 IINGDAFDLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQF 155 (194)
T ss_pred ccccchhhHHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEE
Confidence 788887765 578999999998888987767788888876554443 4444
|
|
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.71 E-value=4.1e-07 Score=80.13 Aligned_cols=130 Identities=20% Similarity=0.280 Sum_probs=88.4
Q ss_pred chhHHHHHHHHhhhcCCCCCCeEEEECCCcccch----HHHHhc-------CCEEEEEeCCHHHHHHHHHHhHH-----h
Q 020710 130 HSKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLA----IPLAKQ-------GAIVSASDISAAMVAEARKKAEE-----E 193 (322)
Q Consensus 130 ~~~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~----~~la~~-------~~~v~gvD~s~~~l~~a~~~~~~-----~ 193 (322)
+..+.+.++..+.........+|+-+||+||.-. ..|.+. ..+|+|+|||..+++.|++-.-. .
T Consensus 78 f~~l~~~v~p~l~~~~~~~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~ 157 (268)
T COG1352 78 FEELRDEVLPELVKRKKGRPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLR 157 (268)
T ss_pred HHHHHHHHHHHHHhhccCCceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhc
Confidence 3444556665444331114679999999999843 333332 35799999999999999753211 0
Q ss_pred hhc---------------cCCCCC-CCCCceEEcccccC---CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEE
Q 020710 194 LLA---------------DNGGEA-PVMPKFEVKDLESL---DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLIL 254 (322)
Q Consensus 194 ~~~---------------~~~~~~-~~~~~~~~~d~~~~---~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il 254 (322)
++. -+++-. ..+|.|...|+.+. .+.||+|+|-+||.++..+.-.++++.++..+++||++
T Consensus 158 ~~~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~L 237 (268)
T COG1352 158 GLPPELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLL 237 (268)
T ss_pred cCCHHHHhhhEeecCCCcEEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEE
Confidence 000 001001 13468888887554 57899999999999999887789999999999888888
Q ss_pred EECCC
Q 020710 255 SFAPK 259 (322)
Q Consensus 255 ~~~~~ 259 (322)
.+.+.
T Consensus 238 flG~s 242 (268)
T COG1352 238 FLGHS 242 (268)
T ss_pred EEccC
Confidence 77654
|
|
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.70 E-value=4.6e-08 Score=87.66 Aligned_cols=143 Identities=13% Similarity=0.083 Sum_probs=98.7
Q ss_pred CCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccCCCCccEEEEccc
Q 020710 149 GIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESLDGKYDTVVCLDV 228 (322)
Q Consensus 149 ~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~fD~V~~~~~ 228 (322)
-...+|+|.|.|+.+..+..+..++.+++++...+-.+.+.+. .++ +.+.+|...--.+-|+|++..+
T Consensus 178 v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~-~gV-----------~~v~gdmfq~~P~~daI~mkWi 245 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLA-PGV-----------EHVAGDMFQDTPKGDAIWMKWI 245 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhc-CCc-----------ceecccccccCCCcCeEEEEee
Confidence 3689999999999999998876679999999877776666654 332 7778887655556689999999
Q ss_pred ccccCcchHHHHHHHHHhccCCeE-EEEEC---CC-hhhHHH------HHHhhccCCCCCCccccccCCHHHHHHHHHHC
Q 020710 229 LIHYPQSKADGMIAHLASLAEKRL-ILSFA---PK-TFYYDL------LKRVGELFPGPSKATRAYLHAEADVERALQKV 297 (322)
Q Consensus 229 l~~~~~~~~~~~l~~l~~~~~~~~-il~~~---~~-~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a 297 (322)
|||++|+...++|++++..++++| |++.. +. ....+. ...+..... ...+--.+..+++.++.++
T Consensus 246 LhdwtDedcvkiLknC~~sL~~~GkIiv~E~V~p~e~~~dd~~s~v~~~~d~lm~~~----~~~Gkert~~e~q~l~~~~ 321 (342)
T KOG3178|consen 246 LHDWTDEDCVKILKNCKKSLPPGGKIIVVENVTPEEDKFDDIDSSVTRDMDLLMLTQ----TSGGKERTLKEFQALLPEE 321 (342)
T ss_pred cccCChHHHHHHHHHHHHhCCCCCEEEEEeccCCCCCCccccccceeehhHHHHHHH----hccceeccHHHHHhcchhh
Confidence 999999999999999998654444 44332 21 100000 000000000 0011234789999999999
Q ss_pred CCEEEEEeee
Q 020710 298 GWKIRKRGLI 307 (322)
Q Consensus 298 Gf~vv~~~~~ 307 (322)
||.+...-..
T Consensus 322 gF~~~~~~~~ 331 (342)
T KOG3178|consen 322 GFPVCMVALT 331 (342)
T ss_pred cCceeEEEec
Confidence 9999876554
|
|
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=98.69 E-value=7.7e-07 Score=78.28 Aligned_cols=153 Identities=18% Similarity=0.165 Sum_probs=98.0
Q ss_pred CCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCC--------------------CC-----
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGG--------------------EA----- 202 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~--------------------~~----- 202 (322)
.+.+||--|||.|+++..++.+|..+.|.|.|-.|+-..+-.+......++.. +.
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv~ 135 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKLGYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPDVD 135 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhccceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCCcC
Confidence 45799999999999999999999999999999999765443322100000000 00
Q ss_pred -------CCCCceEEcccccC---C---CCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEE-CCChhhHHHHHH
Q 020710 203 -------PVMPKFEVKDLESL---D---GKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSF-APKTFYYDLLKR 268 (322)
Q Consensus 203 -------~~~~~~~~~d~~~~---~---~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~-~~~~~~~~~~~~ 268 (322)
..+.....+|+.+. + ++||+|+.+..+.-.++ +-+.++.+.+++++||+.+- .|-.+..
T Consensus 136 p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~N--i~~Yi~tI~~lLkpgG~WIN~GPLlyh~----- 208 (270)
T PF07942_consen 136 PSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAEN--IIEYIETIEHLLKPGGYWINFGPLLYHF----- 208 (270)
T ss_pred cccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHH--HHHHHHHHHHHhccCCEEEecCCccccC-----
Confidence 11335566666554 3 69999999866543333 67889999998877775543 3321111
Q ss_pred hhccCCCC-CCccccccCCHHHHHHHHHHCCCEEEEEeeeeccee
Q 020710 269 VGELFPGP-SKATRAYLHAEADVERALQKVGWKIRKRGLITTQFY 312 (322)
Q Consensus 269 ~~~~~~~~-~~~~~~~~~~~~~~~~~l~~aGf~vv~~~~~~~~~~ 312 (322)
... .......-.+.+|+.+++++.||+++..+.....-|
T Consensus 209 -----~~~~~~~~~sveLs~eEi~~l~~~~GF~~~~~~~~i~~~Y 248 (270)
T PF07942_consen 209 -----EPMSIPNEMSVELSLEEIKELIEKLGFEIEKEESSILSGY 248 (270)
T ss_pred -----CCCCCCCCcccCCCHHHHHHHHHHCCCEEEEEEEeeecCC
Confidence 000 000011235889999999999999998777333333
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=98.69 E-value=6e-08 Score=81.10 Aligned_cols=124 Identities=19% Similarity=0.202 Sum_probs=84.4
Q ss_pred hhhcCchhHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCC-EEEEEeCCHHHHHHHHHHhHHhhhccCCCCCC
Q 020710 125 DIRLGHSKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGA-IVSASDISAAMVAEARKKAEEELLADNGGEAP 203 (322)
Q Consensus 125 ~~~~~~~~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~ 203 (322)
..|+......+.+.++|... ..++.++||+-||+|.++...+.+|+ +|+.||.++..++..+++++..+..+++
T Consensus 20 ~~RPT~drvrealFniL~~~-~~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~---- 94 (183)
T PF03602_consen 20 NTRPTTDRVREALFNILQPR-NLEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKI---- 94 (183)
T ss_dssp TS-SSSHHHHHHHHHHHHCH--HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGE----
T ss_pred CcCCCcHHHHHHHHHHhccc-ccCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcce----
Confidence 34555556667778888753 23689999999999999999999987 6999999999999999999988776544
Q ss_pred CCCceEEcccccC-------CCCccEEEEcccccccCcchHHHHHHHHH--hccCCeEEEEECC
Q 020710 204 VMPKFEVKDLESL-------DGKYDTVVCLDVLIHYPQSKADGMIAHLA--SLAEKRLILSFAP 258 (322)
Q Consensus 204 ~~~~~~~~d~~~~-------~~~fD~V~~~~~l~~~~~~~~~~~l~~l~--~~~~~~~il~~~~ 258 (322)
..+..|.... ..+||+|++---...-.. ...++..+. .++..++++.+.+
T Consensus 95 ---~v~~~d~~~~l~~~~~~~~~fDiIflDPPY~~~~~--~~~~l~~l~~~~~l~~~~~ii~E~ 153 (183)
T PF03602_consen 95 ---RVIKGDAFKFLLKLAKKGEKFDIIFLDPPYAKGLY--YEELLELLAENNLLNEDGLIIIEH 153 (183)
T ss_dssp ---EEEESSHHHHHHHHHHCTS-EEEEEE--STTSCHH--HHHHHHHHHHTTSEEEEEEEEEEE
T ss_pred ---eeeccCHHHHHHhhcccCCCceEEEECCCcccchH--HHHHHHHHHHCCCCCCCEEEEEEe
Confidence 7778885432 579999997544322111 357777776 3566777666643
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.5e-07 Score=79.83 Aligned_cols=50 Identities=26% Similarity=0.306 Sum_probs=39.0
Q ss_pred HHHHHhhhcC-CCCCCeEEEECCCcccchHHHHhcCC-EEEEEeCCHHHHHH
Q 020710 136 NTMQMLNDEG-SLKGIAVCDAGCGTGSLAIPLAKQGA-IVSASDISAAMVAE 185 (322)
Q Consensus 136 ~~~~~l~~~~-~~~~~~VLDvGcG~G~~~~~la~~~~-~v~gvD~s~~~l~~ 185 (322)
++...+...+ ..++.+|||+|||+|.++..+++.|+ +|+|+|+++.|+..
T Consensus 62 kL~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~ 113 (228)
T TIGR00478 62 KLKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAE 113 (228)
T ss_pred HHHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHH
Confidence 3444444332 13577999999999999999999965 69999999988875
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.65 E-value=9.5e-08 Score=85.56 Aligned_cols=76 Identities=33% Similarity=0.339 Sum_probs=64.0
Q ss_pred CCCCCeEEEECCCcccchHHHHhcCC-EEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--C-CCcc
Q 020710 146 SLKGIAVCDAGCGTGSLAIPLAKQGA-IVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL--D-GKYD 221 (322)
Q Consensus 146 ~~~~~~VLDvGcG~G~~~~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~-~~fD 221 (322)
..+++.|||||||||.++...++.|+ +|++||.|. +.+.|++.+..++..+.+ +++.+.+++. + .+.|
T Consensus 58 lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~-ia~~a~~iv~~N~~~~ii-------~vi~gkvEdi~LP~eKVD 129 (346)
T KOG1499|consen 58 LFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASS-IADFARKIVKDNGLEDVI-------TVIKGKVEDIELPVEKVD 129 (346)
T ss_pred hcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechH-HHHHHHHHHHhcCccceE-------EEeecceEEEecCcccee
Confidence 45688999999999999999999987 599999876 559999999998887755 8888888775 4 8999
Q ss_pred EEEEcccc
Q 020710 222 TVVCLDVL 229 (322)
Q Consensus 222 ~V~~~~~l 229 (322)
+|++-+.-
T Consensus 130 iIvSEWMG 137 (346)
T KOG1499|consen 130 IIVSEWMG 137 (346)
T ss_pred EEeehhhh
Confidence 99985543
|
|
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=98.65 E-value=3.9e-07 Score=76.10 Aligned_cols=104 Identities=23% Similarity=0.246 Sum_probs=72.1
Q ss_pred CCCCeEEEECCCcccchHHHHhc--CCE---------EEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEccccc
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQ--GAI---------VSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLES 215 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~--~~~---------v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 215 (322)
.++..|||.-||+|.+.+..+.. ... ++|+|+++.+++.+++++...+....+ .+.+.|+.+
T Consensus 27 ~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i-------~~~~~D~~~ 99 (179)
T PF01170_consen 27 RPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYI-------DFIQWDARE 99 (179)
T ss_dssp -TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGE-------EEEE--GGG
T ss_pred CCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCce-------EEEecchhh
Confidence 46789999999999999877655 333 789999999999999999988876544 888889887
Q ss_pred C---CCCccEEEEcccccc-cCc-----chHHHHHHHHHhccCCeEEEEEC
Q 020710 216 L---DGKYDTVVCLDVLIH-YPQ-----SKADGMIAHLASLAEKRLILSFA 257 (322)
Q Consensus 216 ~---~~~fD~V~~~~~l~~-~~~-----~~~~~~l~~l~~~~~~~~il~~~ 257 (322)
+ ++++|.|+++.-.-. +.. .-...+++++.++++++.++.+.
T Consensus 100 l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~ 150 (179)
T PF01170_consen 100 LPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTT 150 (179)
T ss_dssp GGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEE
T ss_pred cccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEE
Confidence 6 589999999765432 121 11356677777777776665553
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.7e-07 Score=88.91 Aligned_cols=99 Identities=17% Similarity=0.157 Sum_probs=71.8
Q ss_pred CCeEEEECCCcccchHHHHhcC------CEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--CCCc
Q 020710 149 GIAVCDAGCGTGSLAIPLAKQG------AIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL--DGKY 220 (322)
Q Consensus 149 ~~~VLDvGcG~G~~~~~la~~~------~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~f 220 (322)
...|||||||+|-++...++.+ .+|++||-|+.++...+++....++.+++ +++.+|+++. +.+.
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V-------~vi~~d~r~v~lpekv 259 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKV-------TVIHGDMREVELPEKV 259 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTE-------EEEES-TTTSCHSS-E
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeE-------EEEeCcccCCCCCCce
Confidence 4689999999999988777664 47999999999998888887777877665 9999999987 6799
Q ss_pred cEEEEcccccccCcchHHHHHHHHHhccCCeEEE
Q 020710 221 DTVVCLDVLIHYPQSKADGMIAHLASLAEKRLIL 254 (322)
Q Consensus 221 D~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il 254 (322)
|+|++-..-.....+...++|....+.++++|++
T Consensus 260 DIIVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~ 293 (448)
T PF05185_consen 260 DIIVSELLGSFGDNELSPECLDAADRFLKPDGIM 293 (448)
T ss_dssp EEEEE---BTTBTTTSHHHHHHHGGGGEEEEEEE
T ss_pred eEEEEeccCCccccccCHHHHHHHHhhcCCCCEE
Confidence 9999744332222333566777777777776665
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.8e-07 Score=81.56 Aligned_cols=97 Identities=24% Similarity=0.226 Sum_probs=71.9
Q ss_pred CCCCeEEEECCCcccchHHHHhcCC-EEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--CCCccEE
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQGA-IVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL--DGKYDTV 223 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~fD~V 223 (322)
-.++.|||||||.|.++...+..|+ +|++|+-| +|.+.|++..+.+.+.+|+ .++.+.+++. +++.|+|
T Consensus 176 F~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS-~MAqyA~~Lv~~N~~~~rI-------tVI~GKiEdieLPEk~Dvi 247 (517)
T KOG1500|consen 176 FQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEAS-EMAQYARKLVASNNLADRI-------TVIPGKIEDIELPEKVDVI 247 (517)
T ss_pred cCCcEEEEecCCccHHHHHHHHhCcceEEEEehh-HHHHHHHHHHhcCCccceE-------EEccCccccccCchhccEE
Confidence 3578899999999999999988877 59999975 5999999999888777765 8888888876 7999999
Q ss_pred EEcccccccCcchHHHHHHHHHhccCCe
Q 020710 224 VCLDVLIHYPQSKADGMIAHLASLAEKR 251 (322)
Q Consensus 224 ~~~~~l~~~~~~~~~~~l~~l~~~~~~~ 251 (322)
++--.-..+-++...+-.-+.++.+++.
T Consensus 248 ISEPMG~mL~NERMLEsYl~Ark~l~P~ 275 (517)
T KOG1500|consen 248 ISEPMGYMLVNERMLESYLHARKWLKPN 275 (517)
T ss_pred EeccchhhhhhHHHHHHHHHHHhhcCCC
Confidence 9755433333433333333445555443
|
|
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=98.62 E-value=3.3e-07 Score=77.85 Aligned_cols=122 Identities=23% Similarity=0.239 Sum_probs=84.5
Q ss_pred EEEECCCcccchHHHHhcCC--EEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEccccc-C-CCC-ccEEEEc
Q 020710 152 VCDAGCGTGSLAIPLAKQGA--IVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLES-L-DGK-YDTVVCL 226 (322)
Q Consensus 152 VLDvGcG~G~~~~~la~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~-~~~-fD~V~~~ 226 (322)
|.||||-.|++..+|.+.|. +++++|+++.-++.|+++....++.+++ +++.+|-.+ + .+. .|+|+..
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i-------~~rlgdGL~~l~~~e~~d~ivIA 73 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRI-------EVRLGDGLEVLKPGEDVDTIVIA 73 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTE-------EEEE-SGGGG--GGG---EEEEE
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccE-------EEEECCcccccCCCCCCCEEEEe
Confidence 68999999999999999975 6999999999999999999999887766 899999554 4 333 7999876
Q ss_pred ccccccCcchHHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCCCCCccccccCCHHHHHHHHHHCCCEEEEEee
Q 020710 227 DVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQKVGWKIRKRGL 306 (322)
Q Consensus 227 ~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~vv~~~~ 306 (322)
.+=- .....++......+...--+++-|. .....++++|.+.||.++...+
T Consensus 74 GMGG----~lI~~ILe~~~~~~~~~~~lILqP~-------------------------~~~~~LR~~L~~~gf~I~~E~l 124 (205)
T PF04816_consen 74 GMGG----ELIIEILEAGPEKLSSAKRLILQPN-------------------------THAYELRRWLYENGFEIIDEDL 124 (205)
T ss_dssp EE-H----HHHHHHHHHTGGGGTT--EEEEEES-------------------------S-HHHHHHHHHHTTEEEEEEEE
T ss_pred cCCH----HHHHHHHHhhHHHhccCCeEEEeCC-------------------------CChHHHHHHHHHCCCEEEEeEE
Confidence 5432 2244556555443333222222222 1357999999999999999887
Q ss_pred eec
Q 020710 307 ITT 309 (322)
Q Consensus 307 ~~~ 309 (322)
...
T Consensus 125 v~e 127 (205)
T PF04816_consen 125 VEE 127 (205)
T ss_dssp EEE
T ss_pred EeE
Confidence 664
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=98.61 E-value=7e-08 Score=78.48 Aligned_cols=69 Identities=33% Similarity=0.339 Sum_probs=54.8
Q ss_pred eEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-----CC-CccEEE
Q 020710 151 AVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-----DG-KYDTVV 224 (322)
Q Consensus 151 ~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-----~~-~fD~V~ 224 (322)
.|+|+.||.|.+++.+++.+.+|++||+++..++.+++++.-.++.+++ +|+++|+.+. .. .||+|+
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~~Viaidid~~~~~~a~hNa~vYGv~~~I-------~~i~gD~~~~~~~~~~~~~~D~vF 74 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFDRVIAIDIDPERLECAKHNAEVYGVADNI-------DFICGDFFELLKRLKSNKIFDVVF 74 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT-EEEEEES-HHHHHHHHHHHHHTT-GGGE-------EEEES-HHHHGGGB------SEEE
T ss_pred EEEEeccCcCHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHcCCCCcE-------EEEeCCHHHHHhhccccccccEEE
Confidence 6999999999999999999999999999999999999999999887665 9999998765 11 289999
Q ss_pred Ec
Q 020710 225 CL 226 (322)
Q Consensus 225 ~~ 226 (322)
++
T Consensus 75 lS 76 (163)
T PF09445_consen 75 LS 76 (163)
T ss_dssp E-
T ss_pred EC
Confidence 85
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.7e-07 Score=79.07 Aligned_cols=143 Identities=19% Similarity=0.285 Sum_probs=95.0
Q ss_pred HHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCC-EEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccc
Q 020710 136 NTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGA-IVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLE 214 (322)
Q Consensus 136 ~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 214 (322)
..+.-+......++.+|||.+.|-|+.++..+++|+ +|+.++.++..++.|.-+-=..++. . ..++.+.+|+.
T Consensus 122 Dt~~Kv~~V~~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~-----~-~~i~iilGD~~ 195 (287)
T COG2521 122 DTLAKVELVKVKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELF-----E-IAIKIILGDAY 195 (287)
T ss_pred HHHhhhheeccccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCcccc-----c-cccEEecccHH
Confidence 333334433345789999999999999999999999 8999999999998886432111111 0 13488999976
Q ss_pred cC-----CCCccEEEEcccccccCcc----h--HHHHHHHHHhccCCeE-EEEECCChhhHHHHHHhhccCCCCCCcccc
Q 020710 215 SL-----DGKYDTVVCLDVLIHYPQS----K--ADGMIAHLASLAEKRL-ILSFAPKTFYYDLLKRVGELFPGPSKATRA 282 (322)
Q Consensus 215 ~~-----~~~fD~V~~~~~l~~~~~~----~--~~~~l~~l~~~~~~~~-il~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (322)
+. |.+||+|+ |.-|.- + -.++.+++++++++|| ++-...+. +..+ ++
T Consensus 196 e~V~~~~D~sfDaIi-----HDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~P---------g~ry-------rG 254 (287)
T COG2521 196 EVVKDFDDESFDAII-----HDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNP---------GKRY-------RG 254 (287)
T ss_pred HHHhcCCccccceEe-----eCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCC---------Cccc-------cc
Confidence 64 78899998 333320 1 2578999999875554 44332211 0011 11
Q ss_pred ccCCHHHHHHHHHHCCCEEEEEee
Q 020710 283 YLHAEADVERALQKVGWKIRKRGL 306 (322)
Q Consensus 283 ~~~~~~~~~~~l~~aGf~vv~~~~ 306 (322)
.--+..+.+.|+++||.++....
T Consensus 255 -~d~~~gVa~RLr~vGF~~v~~~~ 277 (287)
T COG2521 255 -LDLPKGVAERLRRVGFEVVKKVR 277 (287)
T ss_pred -CChhHHHHHHHHhcCceeeeeeh
Confidence 11356899999999999887543
|
|
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.59 E-value=8.2e-07 Score=76.51 Aligned_cols=152 Identities=20% Similarity=0.198 Sum_probs=102.4
Q ss_pred CCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC------CCCc
Q 020710 149 GIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL------DGKY 220 (322)
Q Consensus 149 ~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~------~~~f 220 (322)
...+||||||.|.+...+|++ ...++|||+....+..+.+++.+.++.| +.+++.|+..+ +++.
T Consensus 49 ~pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~N--------lri~~~DA~~~l~~~~~~~sl 120 (227)
T COG0220 49 APIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKN--------LRLLCGDAVEVLDYLIPDGSL 120 (227)
T ss_pred CcEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCc--------EEEEcCCHHHHHHhcCCCCCe
Confidence 358999999999999999998 4569999999999999999999888732 38899998765 5699
Q ss_pred cEEEEcccccccCcch------HHHHHHHHHhccCCeEEEEECCC-hhhHHH-HHHhhccCC---CCCCccc-----ccc
Q 020710 221 DTVVCLDVLIHYPQSK------ADGMIAHLASLAEKRLILSFAPK-TFYYDL-LKRVGELFP---GPSKATR-----AYL 284 (322)
Q Consensus 221 D~V~~~~~l~~~~~~~------~~~~l~~l~~~~~~~~il~~~~~-~~~~~~-~~~~~~~~~---~~~~~~~-----~~~ 284 (322)
|-|+.++.=-|..... -..+++.+.+.+++||.+.+..+ ..+..+ ........+ ......+ .-.
T Consensus 121 ~~I~i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~~y~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (227)
T COG0220 121 DKIYINFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNEEYFEWMMLEVLEHPPFLKFESEDLHYNLPPPDN 200 (227)
T ss_pred eEEEEECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCHHHHHHHHHHHHhcchhhhccccccccccccccC
Confidence 9999654332222111 25789999998888887776433 333333 332222210 0001001 101
Q ss_pred CCHHHHHHHHHHCCCEEEEEeeee
Q 020710 285 HAEADVERALQKVGWKIRKRGLIT 308 (322)
Q Consensus 285 ~~~~~~~~~l~~aGf~vv~~~~~~ 308 (322)
....++++-....|-.+.......
T Consensus 201 ~~~T~yE~k~~~~g~~i~~l~~~~ 224 (227)
T COG0220 201 NPVTEYEQKFRRLGHPVYDLEFIK 224 (227)
T ss_pred CCCcHHHHHHHhCCCceEEEEEEe
Confidence 244678888999998887765543
|
|
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.59 E-value=3.7e-07 Score=78.78 Aligned_cols=82 Identities=24% Similarity=0.275 Sum_probs=69.2
Q ss_pred HhhhcCCCCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccCC-C
Q 020710 140 MLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESLD-G 218 (322)
Q Consensus 140 ~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~ 218 (322)
.+...+..+...|||||-|||.++..|.+.|.+|+++++++.|+....++........+. .+..+|+...+ .
T Consensus 50 I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv~gtp~~~kL-------qV~~gD~lK~d~P 122 (315)
T KOG0820|consen 50 IVEKADLKPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRVQGTPKSGKL-------QVLHGDFLKTDLP 122 (315)
T ss_pred HHhccCCCCCCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHHhcCCCcccee-------eEEecccccCCCc
Confidence 334444568889999999999999999999999999999999999999999876655544 88899998875 8
Q ss_pred CccEEEEccc
Q 020710 219 KYDTVVCLDV 228 (322)
Q Consensus 219 ~fD~V~~~~~ 228 (322)
.||.++.+--
T Consensus 123 ~fd~cVsNlP 132 (315)
T KOG0820|consen 123 RFDGCVSNLP 132 (315)
T ss_pred ccceeeccCC
Confidence 8999998543
|
|
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=98.59 E-value=2.9e-07 Score=77.79 Aligned_cols=96 Identities=23% Similarity=0.315 Sum_probs=69.7
Q ss_pred CCCCeEEEECCCcccchHHHHh--cCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--CCCccE
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAK--QGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL--DGKYDT 222 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~fD~ 222 (322)
.++..|||..||.|.++..+++ .+..|+++|++|.+++..++++..+++.+++ ....+|..+. .+.||.
T Consensus 100 ~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i-------~~~~~D~~~~~~~~~~dr 172 (200)
T PF02475_consen 100 KPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRI-------EVINGDAREFLPEGKFDR 172 (200)
T ss_dssp -TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTE-------EEEES-GGG---TT-EEE
T ss_pred CcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeE-------EEEcCCHHHhcCccccCE
Confidence 3578999999999999999999 5788999999999999999999988887654 7889998876 689999
Q ss_pred EEEcccccccCcchHHHHHHHHHhccCCeEEEE
Q 020710 223 VVCLDVLIHYPQSKADGMIAHLASLAEKRLILS 255 (322)
Q Consensus 223 V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~ 255 (322)
|++. +|.. ...++....++.+.++++-
T Consensus 173 vim~-----lp~~-~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 173 VIMN-----LPES-SLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp EEE-------TSS-GGGGHHHHHHHEEEEEEEE
T ss_pred EEEC-----ChHH-HHHHHHHHHHHhcCCcEEE
Confidence 9974 3321 2256666767666777653
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.3e-07 Score=85.22 Aligned_cols=101 Identities=25% Similarity=0.309 Sum_probs=88.3
Q ss_pred CCCCeEEEECCCcccchHHHHhc-CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC---CCCccE
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQ-GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL---DGKYDT 222 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~fD~ 222 (322)
.++..++|+|||.|....+++.. ++.++|+|.++..+.++........+.++. .++..|+... ++.||.
T Consensus 109 ~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~-------~~~~~~~~~~~fedn~fd~ 181 (364)
T KOG1269|consen 109 FPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKC-------NFVVADFGKMPFEDNTFDG 181 (364)
T ss_pred cccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhc-------ceehhhhhcCCCCccccCc
Confidence 35568999999999999999887 688999999999999999988888887765 7788887665 799999
Q ss_pred EEEcccccccCcchHHHHHHHHHhccCCeEEEEE
Q 020710 223 VVCLDVLIHYPQSKADGMIAHLASLAEKRLILSF 256 (322)
Q Consensus 223 V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~ 256 (322)
+.+.++.+|.++ ....++++.+.+++||++..
T Consensus 182 v~~ld~~~~~~~--~~~~y~Ei~rv~kpGG~~i~ 213 (364)
T KOG1269|consen 182 VRFLEVVCHAPD--LEKVYAEIYRVLKPGGLFIV 213 (364)
T ss_pred EEEEeecccCCc--HHHHHHHHhcccCCCceEEe
Confidence 999999999999 55999999999888887765
|
|
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.55 E-value=9.4e-07 Score=81.84 Aligned_cols=103 Identities=21% Similarity=0.153 Sum_probs=77.7
Q ss_pred CCCeEEEECCCcccchHHHHhcCC-EEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-------CCC
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQGA-IVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------DGK 219 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------~~~ 219 (322)
.+++|||+-|=||.++.+.+..|+ +|+.||+|...++.|++++.-+++.. ..+.|+++|+.+. ..+
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~------~~~~~i~~Dvf~~l~~~~~~g~~ 290 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDG------DRHRFIVGDVFKWLRKAERRGEK 290 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCc------cceeeehhhHHHHHHHHHhcCCc
Confidence 478999999999999999999999 89999999999999999999888643 2238999998775 359
Q ss_pred ccEEEEcc-cccccCc------chHHHHHHHHHhccCCeEEEEE
Q 020710 220 YDTVVCLD-VLIHYPQ------SKADGMIAHLASLAEKRLILSF 256 (322)
Q Consensus 220 fD~V~~~~-~l~~~~~------~~~~~~l~~l~~~~~~~~il~~ 256 (322)
||+|++-- .+---+. .....++..+.+++.+++++.+
T Consensus 291 fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~ 334 (393)
T COG1092 291 FDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVT 334 (393)
T ss_pred ccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 99999742 1111111 1145666666777766665544
|
|
| >KOG2730 consensus Methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.55 E-value=6.7e-08 Score=80.69 Aligned_cols=119 Identities=28% Similarity=0.326 Sum_probs=83.6
Q ss_pred hHHHHHHhchhhHHHHHHHhcCCCcccchhhhhhcCchhHHHHHHHHhhhcC--CCCCCeEEEECCCcccchHHHHhcCC
Q 020710 94 KEVVREYFNNSGFQRWKKIYGETDDVNRVQLDIRLGHSKTVENTMQMLNDEG--SLKGIAVCDAGCGTGSLAIPLAKQGA 171 (322)
Q Consensus 94 ~~~v~~~f~~~~~~~w~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~VLDvGcG~G~~~~~la~~~~ 171 (322)
...+..||... ...|...++. ..++...++..+.+.+...+...- ......|+|.-||.|.++..++.+++
T Consensus 45 ~p~l~kywk~r-----yrlfsrfd~g--i~md~e~wfsvTpe~ia~~iA~~v~~~~~~~~iidaf~g~gGntiqfa~~~~ 117 (263)
T KOG2730|consen 45 NPELFKYWKNR-----YRLFSRFDSG--IYMDREGWFSVTPEKIAEHIANRVVACMNAEVIVDAFCGVGGNTIQFALQGP 117 (263)
T ss_pred ChHHHHHHHHH-----HHHHHhhccc--eeecccceEEeccHHHHHHHHHHHHHhcCcchhhhhhhcCCchHHHHHHhCC
Confidence 34566666643 5555555544 222322234444444444443210 12467899999999999999999999
Q ss_pred EEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-------CCCccEEEEc
Q 020710 172 IVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------DGKYDTVVCL 226 (322)
Q Consensus 172 ~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------~~~fD~V~~~ 226 (322)
.|++||++|.-+..|+++++-.|+.+|+ +|+++|+.++ ...+|+|+.+
T Consensus 118 ~VisIdiDPikIa~AkhNaeiYGI~~rI-------tFI~GD~ld~~~~lq~~K~~~~~vf~s 172 (263)
T KOG2730|consen 118 YVIAIDIDPVKIACARHNAEVYGVPDRI-------TFICGDFLDLASKLKADKIKYDCVFLS 172 (263)
T ss_pred eEEEEeccHHHHHHHhccceeecCCcee-------EEEechHHHHHHHHhhhhheeeeeecC
Confidence 9999999999999999999999998877 9999998776 2345666654
|
|
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=98.53 E-value=5e-07 Score=80.41 Aligned_cols=103 Identities=19% Similarity=0.169 Sum_probs=71.7
Q ss_pred CCCeEEEECCCcccchHHHHhcCC-EEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC------CCCc
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQGA-IVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL------DGKY 220 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~------~~~f 220 (322)
++++|||+-|=||.++.+.+..|+ +|+.||.|..+++.+++++.-+++.. ..++|++.|+.+. .++|
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~------~~~~~~~~Dvf~~l~~~~~~~~f 196 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDL------DRHRFIQGDVFKFLKRLKKGGRF 196 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CC------TCEEEEES-HHHHHHHHHHTT-E
T ss_pred CCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCc------cceEEEecCHHHHHHHHhcCCCC
Confidence 478999999999999999888887 69999999999999999998887642 2238999998763 5799
Q ss_pred cEEEEccc-ccccC---cchHHHHHHHHHhccCCeEEEEE
Q 020710 221 DTVVCLDV-LIHYP---QSKADGMIAHLASLAEKRLILSF 256 (322)
Q Consensus 221 D~V~~~~~-l~~~~---~~~~~~~l~~l~~~~~~~~il~~ 256 (322)
|+|++--- +.-=. ......+++.+.+++.++|++.+
T Consensus 197 D~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~ 236 (286)
T PF10672_consen 197 DLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLT 236 (286)
T ss_dssp EEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred CEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEE
Confidence 99998431 11000 11245667777777766765543
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.2e-06 Score=78.21 Aligned_cols=108 Identities=17% Similarity=0.172 Sum_probs=72.0
Q ss_pred CCCCeEEEECCCcccchHHHHhc---CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccCCCCccEE
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQ---GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESLDGKYDTV 223 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~fD~V 223 (322)
-.+.+|||+|||.|..+-.+.+. -.+++++|.|+.|++.++..+....... . .........+.... ...|+|
T Consensus 32 f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~-~---~~~~~~~~~~~~~~-~~~DLv 106 (274)
T PF09243_consen 32 FRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNR-N---AEWRRVLYRDFLPF-PPDDLV 106 (274)
T ss_pred CCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccc-c---chhhhhhhcccccC-CCCcEE
Confidence 35789999999999876655543 3469999999999999988776432211 0 00001111122222 234999
Q ss_pred EEcccccccCcchHHHHHHHHHhccCCeEEEEECCCh
Q 020710 224 VCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKT 260 (322)
Q Consensus 224 ~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~ 260 (322)
++.++|..+++.....+++.+.....+ .+|++.+.+
T Consensus 107 i~s~~L~EL~~~~r~~lv~~LW~~~~~-~LVlVEpGt 142 (274)
T PF09243_consen 107 IASYVLNELPSAARAELVRSLWNKTAP-VLVLVEPGT 142 (274)
T ss_pred EEehhhhcCCchHHHHHHHHHHHhccC-cEEEEcCCC
Confidence 999999999986677888888765555 555566654
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.50 E-value=8.7e-07 Score=79.85 Aligned_cols=103 Identities=24% Similarity=0.217 Sum_probs=78.1
Q ss_pred CCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEc-ccccC---CCCccE
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVK-DLESL---DGKYDT 222 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~-d~~~~---~~~fD~ 222 (322)
.++..|||--||||.++....-.|++++|+|++..|++-++.++...++.+- .+... |+..+ ++++|.
T Consensus 196 ~~G~~vlDPFcGTGgiLiEagl~G~~viG~Did~~mv~gak~Nl~~y~i~~~--------~~~~~~Da~~lpl~~~~vda 267 (347)
T COG1041 196 KRGELVLDPFCGTGGILIEAGLMGARVIGSDIDERMVRGAKINLEYYGIEDY--------PVLKVLDATNLPLRDNSVDA 267 (347)
T ss_pred ccCCEeecCcCCccHHHHhhhhcCceEeecchHHHHHhhhhhhhhhhCcCce--------eEEEecccccCCCCCCccce
Confidence 4678999999999999999888899999999999999999999998875531 23444 77765 456999
Q ss_pred EEEcccccc------cC-cchHHHHHHHHHhccCCeEEEEEC
Q 020710 223 VVCLDVLIH------YP-QSKADGMIAHLASLAEKRLILSFA 257 (322)
Q Consensus 223 V~~~~~l~~------~~-~~~~~~~l~~l~~~~~~~~il~~~ 257 (322)
|++-.-.-- .. ++-+.++++.+.+++++|+.+.+.
T Consensus 268 IatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~ 309 (347)
T COG1041 268 IATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFA 309 (347)
T ss_pred EEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEe
Confidence 998432211 11 222567788888888888877664
|
|
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=3.5e-07 Score=81.83 Aligned_cols=86 Identities=13% Similarity=0.085 Sum_probs=69.0
Q ss_pred hHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcC---CEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCce
Q 020710 132 KTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQG---AIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKF 208 (322)
Q Consensus 132 ~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~---~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~ 208 (322)
.+++++++.+... ++..++|++||.|.++..+++.. .+|+|+|.++.|++.+++++.+ .+++ .+
T Consensus 6 Vll~Evl~~L~~~---pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~---~~ri-------~~ 72 (296)
T PRK00050 6 VLLDEVVDALAIK---PDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP---FGRF-------TL 72 (296)
T ss_pred ccHHHHHHhhCCC---CCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc---CCcE-------EE
Confidence 4667888888754 57899999999999999999883 6899999999999999988755 2233 88
Q ss_pred EEcccccC----CC---CccEEEEccccc
Q 020710 209 EVKDLESL----DG---KYDTVVCLDVLI 230 (322)
Q Consensus 209 ~~~d~~~~----~~---~fD~V~~~~~l~ 230 (322)
+.+|+.++ .. ++|.|++...+.
T Consensus 73 i~~~f~~l~~~l~~~~~~vDgIl~DLGvS 101 (296)
T PRK00050 73 VHGNFSNLKEVLAEGLGKVDGILLDLGVS 101 (296)
T ss_pred EeCCHHHHHHHHHcCCCccCEEEECCCcc
Confidence 89988765 22 799999866543
|
|
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.47 E-value=5e-06 Score=67.70 Aligned_cols=75 Identities=21% Similarity=0.220 Sum_probs=59.8
Q ss_pred CCCeEEEECCCcccchHHHHhc---CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--CCCccE
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQ---GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL--DGKYDT 222 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~fD~ 222 (322)
...-+||||||+|..+..|++. +..+.++|++|.+++...+.+..++... ..++.|+..- .++.|+
T Consensus 43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~---------~~V~tdl~~~l~~~~VDv 113 (209)
T KOG3191|consen 43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHI---------DVVRTDLLSGLRNESVDV 113 (209)
T ss_pred CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCcc---------ceeehhHHhhhccCCccE
Confidence 3678999999999999999887 3458899999999998887776655433 7788887653 689999
Q ss_pred EEEcccccc
Q 020710 223 VVCLDVLIH 231 (322)
Q Consensus 223 V~~~~~l~~ 231 (322)
++.+--..-
T Consensus 114 LvfNPPYVp 122 (209)
T KOG3191|consen 114 LVFNPPYVP 122 (209)
T ss_pred EEECCCcCc
Confidence 998876433
|
|
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.1e-06 Score=73.97 Aligned_cols=137 Identities=15% Similarity=0.147 Sum_probs=89.3
Q ss_pred HHHHHHhhhcCC-----CCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceE
Q 020710 135 ENTMQMLNDEGS-----LKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFE 209 (322)
Q Consensus 135 ~~~~~~l~~~~~-----~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~ 209 (322)
..++++|..... ....++|||||=...+...-. .-..|+.||+++.- . .+.
T Consensus 33 K~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s~~-~~fdvt~IDLns~~----------~-------------~I~ 88 (219)
T PF11968_consen 33 KWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACSTS-GWFDVTRIDLNSQH----------P-------------GIL 88 (219)
T ss_pred HHHHHHhhhhccccccccccceEEeecccCCCCccccc-CceeeEEeecCCCC----------C-------------Cce
Confidence 345555554321 123699999998766543321 13469999997621 1 344
Q ss_pred EcccccC------CCCccEEEEcccccccCcch-HHHHHHHHHhccCCeE------EEEECCChhhHHHHHHhhccCCCC
Q 020710 210 VKDLESL------DGKYDTVVCLDVLIHYPQSK-ADGMIAHLASLAEKRL------ILSFAPKTFYYDLLKRVGELFPGP 276 (322)
Q Consensus 210 ~~d~~~~------~~~fD~V~~~~~l~~~~~~~-~~~~l~~l~~~~~~~~------il~~~~~~~~~~~~~~~~~~~~~~ 276 (322)
+.|+.+. .++||+|.|+.||.++|++. ..+|++++.+.+.+.+ ++++.|..=
T Consensus 89 qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~C--------------- 153 (219)
T PF11968_consen 89 QQDFMERPLPKNESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPC--------------- 153 (219)
T ss_pred eeccccCCCCCCcccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchH---------------
Confidence 4554432 57999999999999999765 4689999999765444 344444321
Q ss_pred CCccccccCCHHHHHHHHHHCCCEEEEEeeeeccee
Q 020710 277 SKATRAYLHAEADVERALQKVGWKIRKRGLITTQFY 312 (322)
Q Consensus 277 ~~~~~~~~~~~~~~~~~l~~aGf~vv~~~~~~~~~~ 312 (322)
..+..+.+.+.+..++...||..++.....+-.|
T Consensus 154 --v~NSRy~~~~~l~~im~~LGf~~~~~~~~~Kl~y 187 (219)
T PF11968_consen 154 --VTNSRYMTEERLREIMESLGFTRVKYKKSKKLAY 187 (219)
T ss_pred --hhcccccCHHHHHHHHHhCCcEEEEEEecCeEEE
Confidence 1122345788999999999999998766554333
|
|
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=98.43 E-value=2e-06 Score=78.64 Aligned_cols=105 Identities=18% Similarity=0.109 Sum_probs=73.5
Q ss_pred CCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC----CCCcc
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL----DGKYD 221 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~~fD 221 (322)
.+.+||.||+|.|..+..+++. ..+|+.||+++++++.+++.+...... ..-.+++++.+|+... +++||
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~----~~dprv~v~~~Da~~~L~~~~~~yD 178 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREA----FCDKRLELIINDARAELEKRDEKFD 178 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhccccccc----ccCCceEEEEChhHHHHhhCCCCcc
Confidence 4679999999999999998886 357999999999999999987542210 0112348899997654 57899
Q ss_pred EEEEccccccc---Ccch--HHHHHH-HHHhccCCeEEEEEC
Q 020710 222 TVVCLDVLIHY---PQSK--ADGMIA-HLASLAEKRLILSFA 257 (322)
Q Consensus 222 ~V~~~~~l~~~---~~~~--~~~~l~-~l~~~~~~~~il~~~ 257 (322)
+|++-.. ... +... -.++++ .+++.++++|++.+.
T Consensus 179 vIi~D~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 179 VIIGDLA-DPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred EEEecCC-CccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 9997521 111 1100 136777 788888777776653
|
|
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.3e-06 Score=76.42 Aligned_cols=168 Identities=17% Similarity=0.233 Sum_probs=95.9
Q ss_pred hhHHHHHHHHhhhcCCCCCCeEEEECCC--cccchHHHHhc---CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCC
Q 020710 131 SKTVENTMQMLNDEGSLKGIAVCDAGCG--TGSLAIPLAKQ---GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVM 205 (322)
Q Consensus 131 ~~~~~~~~~~l~~~~~~~~~~VLDvGcG--~G~~~~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~ 205 (322)
+.++.+..+++... .--...|||||| |-.+...+++. .++|+-||++|-.+..++..+..... .+
T Consensus 53 R~Fl~RaVr~la~~--~GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~-g~------- 122 (267)
T PF04672_consen 53 RAFLRRAVRYLAEE--AGIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPR-GR------- 122 (267)
T ss_dssp HHHHHHHHHHHHCT--T---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TT-SE-------
T ss_pred HHHHHHHHHHHHHh--cCcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCC-cc-------
Confidence 34566777777654 013569999999 44466667665 78999999999999999988766432 00
Q ss_pred CceEEcccccC---------CCCcc-----EEEEcccccccCc-chHHHHHHHHHhccCCeEEEEECCCh--hhHHHHHH
Q 020710 206 PKFEVKDLESL---------DGKYD-----TVVCLDVLIHYPQ-SKADGMIAHLASLAEKRLILSFAPKT--FYYDLLKR 268 (322)
Q Consensus 206 ~~~~~~d~~~~---------~~~fD-----~V~~~~~l~~~~~-~~~~~~l~~l~~~~~~~~il~~~~~~--~~~~~~~~ 268 (322)
..++.+|+.++ .+-+| .|++..+|||++| +....+++.++..+.+|-++.+++.+ ........
T Consensus 123 t~~v~aD~r~p~~iL~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~~p~~~~~ 202 (267)
T PF04672_consen 123 TAYVQADLRDPEAILAHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDGAPERAEA 202 (267)
T ss_dssp EEEEE--TT-HHHHHCSHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TTSHHHHHH
T ss_pred EEEEeCCCCCHHHHhcCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCCCHHHHHH
Confidence 17999998775 13344 6888999999987 55789999999988777766554322 11222122
Q ss_pred hhccCCCCCCccccccCCHHHHHHHHHHCCCEEEEEeeeeccee
Q 020710 269 VGELFPGPSKATRAYLHAEADVERALQKVGWKIRKRGLITTQFY 312 (322)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~vv~~~~~~~~~~ 312 (322)
+...+.. .....++.+.+++.++|. ||++++=......-|
T Consensus 203 ~~~~~~~--~~~~~~~Rs~~ei~~~f~--g~elvePGlv~~~~W 242 (267)
T PF04672_consen 203 LEAVYAQ--AGSPGRPRSREEIAAFFD--GLELVEPGLVPVPRW 242 (267)
T ss_dssp HHHHHHH--CCS----B-HHHHHHCCT--TSEE-TT-SEEGGGS
T ss_pred HHHHHHc--CCCCceecCHHHHHHHcC--CCccCCCceeccccc
Confidence 2222211 122345679999999987 999987555554444
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.37 E-value=2.1e-06 Score=74.93 Aligned_cols=87 Identities=18% Similarity=0.160 Sum_probs=66.4
Q ss_pred HHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEccc
Q 020710 134 VENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDL 213 (322)
Q Consensus 134 ~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~ 213 (322)
++++++.+... ++.+|||||+|.|.++..|++.+.+|+++++++.++...+++..... +++.+.+|+
T Consensus 19 ~~kIv~~a~~~---~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~~~----------n~~vi~~Da 85 (259)
T COG0030 19 IDKIVEAANIS---PGDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFAPYD----------NLTVINGDA 85 (259)
T ss_pred HHHHHHhcCCC---CCCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhccccc----------ceEEEeCch
Confidence 35555555443 57899999999999999999999999999999999999998875221 127889998
Q ss_pred ccC--CC--CccEEEEcccccccCc
Q 020710 214 ESL--DG--KYDTVVCLDVLIHYPQ 234 (322)
Q Consensus 214 ~~~--~~--~fD~V~~~~~l~~~~~ 234 (322)
... +. .++.|+.+--. ++..
T Consensus 86 Lk~d~~~l~~~~~vVaNlPY-~Iss 109 (259)
T COG0030 86 LKFDFPSLAQPYKVVANLPY-NISS 109 (259)
T ss_pred hcCcchhhcCCCEEEEcCCC-cccH
Confidence 776 23 67888876543 4444
|
|
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.33 E-value=3.8e-06 Score=69.94 Aligned_cols=120 Identities=18% Similarity=0.273 Sum_probs=81.6
Q ss_pred hhHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc----CCEEEEEeCCHHHHHHHHHHhHHhhhcc--CCCCCCC
Q 020710 131 SKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ----GAIVSASDISAAMVAEARKKAEEELLAD--NGGEAPV 204 (322)
Q Consensus 131 ~~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~----~~~v~gvD~s~~~l~~a~~~~~~~~~~~--~~~~~~~ 204 (322)
..+...++++|... ..++.+.||||.|+|+++..++.. |..+.|||.-++.|+.+++++...-... ..++.+-
T Consensus 66 p~mha~~le~L~~~-L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~ 144 (237)
T KOG1661|consen 66 PHMHATALEYLDDH-LQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRG 144 (237)
T ss_pred hHHHHHHHHHHHHh-hccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccC
Confidence 34556777777743 357899999999999999888855 4446999999999999999987653210 1123334
Q ss_pred CCceEEcccccC---CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEEC
Q 020710 205 MPKFEVKDLESL---DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFA 257 (322)
Q Consensus 205 ~~~~~~~d~~~~---~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~ 257 (322)
...++++|.... ..+||.|.|-....-+| +.+++.|.. ++++++-..
T Consensus 145 ~l~ivvGDgr~g~~e~a~YDaIhvGAaa~~~p----q~l~dqL~~--gGrllip~~ 194 (237)
T KOG1661|consen 145 ELSIVVGDGRKGYAEQAPYDAIHVGAAASELP----QELLDQLKP--GGRLLIPVG 194 (237)
T ss_pred ceEEEeCCccccCCccCCcceEEEccCccccH----HHHHHhhcc--CCeEEEeec
Confidence 457888887654 68999999975544333 266666542 344444443
|
|
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=98.29 E-value=4.1e-06 Score=72.21 Aligned_cols=140 Identities=21% Similarity=0.237 Sum_probs=92.6
Q ss_pred CCCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--CCCccE
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL--DGKYDT 222 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~fD~ 222 (322)
+++.+|+|||||.-=++...... +..|+|+||+..+++.........+... ++...|+..- ....|+
T Consensus 104 ~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~---------~~~v~Dl~~~~~~~~~Dl 174 (251)
T PF07091_consen 104 PPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPH---------DARVRDLLSDPPKEPADL 174 (251)
T ss_dssp ---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CE---------EEEEE-TTTSHTTSEESE
T ss_pred CCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCc---------ceeEeeeeccCCCCCcch
Confidence 45789999999998888877766 5789999999999999999888777665 7888887654 677999
Q ss_pred EEEcccccccCcchHHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCCCCCccccccCCHHHHHHHHHHCCCEEE
Q 020710 223 VVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQKVGWKIR 302 (322)
Q Consensus 223 V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~vv 302 (322)
.+..=+++-+........++-+..+..+.++++|...++.. +-..+. .. -..+++.++.+.||.+-
T Consensus 175 aLllK~lp~le~q~~g~g~~ll~~~~~~~~vVSfPtrSL~g----R~~gm~-------~~---y~~~fe~~~~~~~~~~~ 240 (251)
T PF07091_consen 175 ALLLKTLPCLERQRRGAGLELLDALRSPHVVVSFPTRSLGG----RNKGME-------QT---YSAWFEALAAERGWIVD 240 (251)
T ss_dssp EEEET-HHHHHHHSTTHHHHHHHHSCESEEEEEEES-----------TTHH-------HC---HHHHHHHHCCTTCEEEE
T ss_pred hhHHHHHHHHHHHhcchHHHHHHHhCCCeEEEecccccccc----Cccccc-------cC---HHHHHHHhcccCCceee
Confidence 99988876665433334456666666788889886554321 100010 11 25689999999999966
Q ss_pred EEeeeec
Q 020710 303 KRGLITT 309 (322)
Q Consensus 303 ~~~~~~~ 309 (322)
+.+..+.
T Consensus 241 ~~~~~~E 247 (251)
T PF07091_consen 241 RLTFGNE 247 (251)
T ss_dssp EEEETTE
T ss_pred eeecccc
Confidence 6554433
|
|
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.29 E-value=1e-05 Score=67.03 Aligned_cols=122 Identities=15% Similarity=0.150 Sum_probs=84.9
Q ss_pred hcCchhHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCC-EEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCC
Q 020710 127 RLGHSKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGA-IVSASDISAAMVAEARKKAEEELLADNGGEAPVM 205 (322)
Q Consensus 127 ~~~~~~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~ 205 (322)
|+.....-+.+.++|... ...+.++||+-+|+|.++...+.+|+ +++.||.+...++..+++....+...++
T Consensus 23 RPT~drVREalFNil~~~-~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~------ 95 (187)
T COG0742 23 RPTTDRVREALFNILAPD-EIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEA------ 95 (187)
T ss_pred CCCchHHHHHHHHhcccc-ccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccce------
Confidence 444445557777888761 14689999999999999999999977 5999999999999999999887755444
Q ss_pred CceEEcccccC----CC--CccEEEEcccccc-cCcchHHHHHHHH--HhccCCeEEEEECC
Q 020710 206 PKFEVKDLESL----DG--KYDTVVCLDVLIH-YPQSKADGMIAHL--ASLAEKRLILSFAP 258 (322)
Q Consensus 206 ~~~~~~d~~~~----~~--~fD~V~~~~~l~~-~~~~~~~~~l~~l--~~~~~~~~il~~~~ 258 (322)
.++..|+... .. .||+|+.---++. +.+. ...+..+ ..++.+++++.+..
T Consensus 96 -~~~~~da~~~L~~~~~~~~FDlVflDPPy~~~l~~~--~~~~~~~~~~~~L~~~~~iv~E~ 154 (187)
T COG0742 96 -RVLRNDALRALKQLGTREPFDLVFLDPPYAKGLLDK--ELALLLLEENGWLKPGALIVVEH 154 (187)
T ss_pred -EEEeecHHHHHHhcCCCCcccEEEeCCCCccchhhH--HHHHHHHHhcCCcCCCcEEEEEe
Confidence 7888887632 33 4999998655541 1111 1222221 23466777666644
|
|
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.4e-07 Score=78.04 Aligned_cols=94 Identities=20% Similarity=0.314 Sum_probs=68.3
Q ss_pred CCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccCCCCccEEEEc
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESLDGKYDTVVCL 226 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~fD~V~~~ 226 (322)
..+.++||+|+|.|..+..++..--+|++.++|..|....+++--. ..-..+..+.+-+||+|.|.
T Consensus 111 ~~~~~lLDlGAGdGeit~~m~p~feevyATElS~tMr~rL~kk~yn--------------Vl~~~ew~~t~~k~dli~cl 176 (288)
T KOG3987|consen 111 QEPVTLLDLGAGDGEITLRMAPTFEEVYATELSWTMRDRLKKKNYN--------------VLTEIEWLQTDVKLDLILCL 176 (288)
T ss_pred CCCeeEEeccCCCcchhhhhcchHHHHHHHHhhHHHHHHHhhcCCc--------------eeeehhhhhcCceeehHHHH
Confidence 3467999999999999999888766799999999998877654211 11112223335679999999
Q ss_pred ccccccCcchHHHHHHHHHhcc---CCeEEEEE
Q 020710 227 DVLIHYPQSKADGMIAHLASLA---EKRLILSF 256 (322)
Q Consensus 227 ~~l~~~~~~~~~~~l~~l~~~~---~~~~il~~ 256 (322)
+.|.-.-++. ++++.++.++ .+.+|+.+
T Consensus 177 NlLDRc~~p~--kLL~Di~~vl~psngrvivaL 207 (288)
T KOG3987|consen 177 NLLDRCFDPF--KLLEDIHLVLAPSNGRVIVAL 207 (288)
T ss_pred HHHHhhcChH--HHHHHHHHHhccCCCcEEEEE
Confidence 9997776755 8888888764 44556544
|
|
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.4e-05 Score=64.10 Aligned_cols=89 Identities=24% Similarity=0.259 Sum_probs=66.0
Q ss_pred CCCCeEEEECCCcccchHHHHh-----c-CCEEEEEeCCHHHHHHHHHHhHHhh--hccCCCCCCCCCceEEcccccC--
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAK-----Q-GAIVSASDISAAMVAEARKKAEEEL--LADNGGEAPVMPKFEVKDLESL-- 216 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~-----~-~~~v~gvD~s~~~l~~a~~~~~~~~--~~~~~~~~~~~~~~~~~d~~~~-- 216 (322)
.+..+|+|+|||.|+++..|+. . +.+|++||.++..++.+.++..+.. ...+ ..+..++..+.
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~~~~~~~~ 96 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKR-------LSFIQGDIADESS 96 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhcc-------chhhccchhhhcc
Confidence 4678999999999999999998 4 7899999999999999998887765 2222 26666665543
Q ss_pred CCCccEEEEcccccccCcchHHHHHHHHHh
Q 020710 217 DGKYDTVVCLDVLIHYPQSKADGMIAHLAS 246 (322)
Q Consensus 217 ~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~ 246 (322)
....++++....--.+.+ .+++...+
T Consensus 97 ~~~~~~~vgLHaCG~Ls~----~~l~~~~~ 122 (141)
T PF13679_consen 97 SDPPDILVGLHACGDLSD----RALRLFIR 122 (141)
T ss_pred cCCCeEEEEeecccchHH----HHHHHHHH
Confidence 567788887655444444 55555555
|
|
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.2e-05 Score=73.06 Aligned_cols=96 Identities=22% Similarity=0.266 Sum_probs=75.2
Q ss_pred CCCeEEEECCCcccchHHHHhcCCE-EEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--C-CCccEE
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQGAI-VSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL--D-GKYDTV 223 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~~~~-v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~-~~fD~V 223 (322)
++.+|||.-||.|.+++.+++.|.. |+++|++|.+++..++++.-+++.+++ ..+++|..+. . +.||-|
T Consensus 188 ~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v-------~~i~gD~rev~~~~~~aDrI 260 (341)
T COG2520 188 EGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRV-------EPILGDAREVAPELGVADRI 260 (341)
T ss_pred CCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCcccee-------eEEeccHHHhhhccccCCEE
Confidence 4899999999999999999999876 999999999999999999988887755 8999998776 3 679999
Q ss_pred EEcccccccCcchHHHHHHHHHhccCCeEEEEE
Q 020710 224 VCLDVLIHYPQSKADGMIAHLASLAEKRLILSF 256 (322)
Q Consensus 224 ~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~ 256 (322)
++...- . ...++....++++.++++-+
T Consensus 261 im~~p~----~--a~~fl~~A~~~~k~~g~iHy 287 (341)
T COG2520 261 IMGLPK----S--AHEFLPLALELLKDGGIIHY 287 (341)
T ss_pred EeCCCC----c--chhhHHHHHHHhhcCcEEEE
Confidence 986432 2 12444444444444665543
|
|
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=98.26 E-value=6.6e-06 Score=72.22 Aligned_cols=106 Identities=18% Similarity=0.105 Sum_probs=74.7
Q ss_pred CCCeEEEECCCcccchHHHHhcC--CEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC----CC-Cc
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQG--AIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL----DG-KY 220 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~-~f 220 (322)
++.+||-||.|.|..+..+.+.. .+++.||+++.+++.+++.+....... .-.+++++.+|.... .. +|
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~----~d~r~~i~~~Dg~~~l~~~~~~~y 151 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGL----DDPRVRIIIGDGRKFLKETQEEKY 151 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTG----GSTTEEEEESTHHHHHHTSSST-E
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhcccc----CCCceEEEEhhhHHHHHhccCCcc
Confidence 58899999999999999999884 589999999999999999887543210 002238899997553 45 89
Q ss_pred cEEEEcccccccCcch--HHHHHHHHHhccCCeEEEEEC
Q 020710 221 DTVVCLDVLIHYPQSK--ADGMIAHLASLAEKRLILSFA 257 (322)
Q Consensus 221 D~V~~~~~l~~~~~~~--~~~~l~~l~~~~~~~~il~~~ 257 (322)
|+|+.-..-...+... ..++++.+++.+.++|++...
T Consensus 152 DvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~ 190 (246)
T PF01564_consen 152 DVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQ 190 (246)
T ss_dssp EEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEE
T ss_pred cEEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEE
Confidence 9999743321112111 258999999988888877653
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=8.4e-06 Score=76.02 Aligned_cols=71 Identities=30% Similarity=0.273 Sum_probs=58.6
Q ss_pred CCeEEEECCCcccchHHHHhc-C-CEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC---CCCccEE
Q 020710 149 GIAVCDAGCGTGSLAIPLAKQ-G-AIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL---DGKYDTV 223 (322)
Q Consensus 149 ~~~VLDvGcG~G~~~~~la~~-~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~fD~V 223 (322)
+.+|||++||+|.++..++.. + .+|+++|+++.+++.+++++..+++.+ +.+.++|+..+ .+.||+|
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~--------~~v~~~Da~~~l~~~~~fD~V 129 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLEN--------EKVFNKDANALLHEERKFDVV 129 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc--------eEEEhhhHHHHHhhcCCCCEE
Confidence 468999999999999999876 4 379999999999999999998776543 26888898653 3679999
Q ss_pred EEcc
Q 020710 224 VCLD 227 (322)
Q Consensus 224 ~~~~ 227 (322)
++.-
T Consensus 130 ~lDP 133 (382)
T PRK04338 130 DIDP 133 (382)
T ss_pred EECC
Confidence 9753
|
|
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.9e-05 Score=69.46 Aligned_cols=96 Identities=16% Similarity=0.004 Sum_probs=71.4
Q ss_pred CCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhh--hccCCCCCCCCCceEEcccccC-CCCccEE
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEEL--LADNGGEAPVMPKFEVKDLESL-DGKYDTV 223 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~~~~~~~~~~~~~~~~d~~~~-~~~fD~V 223 (322)
+.+++||=||.|.|..++.++++..+|+-|||++++++.+++.+.... .++ ++++++. .+.+. .++||+|
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~~~v~mVeID~~Vv~~~k~~lP~~~~~~~D------pRv~l~~-~~~~~~~~~fDVI 143 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYDTHVDFVQADEKILDSFISFFPHFHEVKNN------KNFTHAK-QLLDLDIKKYDLI 143 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCcCCeeEEEECCHHHHHHHHHHCHHHHHhhcC------CCEEEee-hhhhccCCcCCEE
Confidence 357899999999999999999996699999999999999999776532 222 1223333 22222 4789999
Q ss_pred EEcccccccCcchHHHHHHHHHhccCCeEEEEE
Q 020710 224 VCLDVLIHYPQSKADGMIAHLASLAEKRLILSF 256 (322)
Q Consensus 224 ~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~ 256 (322)
++-.. .+ ..+++.+++.++++|++..
T Consensus 144 IvDs~-----~~--~~fy~~~~~~L~~~Gi~v~ 169 (262)
T PRK00536 144 ICLQE-----PD--IHKIDGLKRMLKEDGVFIS 169 (262)
T ss_pred EEcCC-----CC--hHHHHHHHHhcCCCcEEEE
Confidence 97543 22 2788889998888887766
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.1e-06 Score=82.33 Aligned_cols=119 Identities=14% Similarity=0.123 Sum_probs=74.3
Q ss_pred hhHHHHHHHHhhhc-CCCCCCeEEEECCCcccchHHHHhcCCEEEEE---eCCHHHHHHHHHHhHHhhhccCCCCCCCCC
Q 020710 131 SKTVENTMQMLNDE-GSLKGIAVCDAGCGTGSLAIPLAKQGAIVSAS---DISAAMVAEARKKAEEELLADNGGEAPVMP 206 (322)
Q Consensus 131 ~~~~~~~~~~l~~~-~~~~~~~VLDvGcG~G~~~~~la~~~~~v~gv---D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~ 206 (322)
...++.+.+++... ....-..+||||||+|.|+.+|.+++..+..+ |..+.+++.|-++ |+.--+ .
T Consensus 99 ~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleR----Gvpa~~------~ 168 (506)
T PF03141_consen 99 DHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALER----GVPAMI------G 168 (506)
T ss_pred HHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhc----Ccchhh------h
Confidence 34455566666541 11233479999999999999999997654333 3344556555444 221100 0
Q ss_pred ceEEcccccCCCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEECCCh
Q 020710 207 KFEVKDLESLDGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKT 260 (322)
Q Consensus 207 ~~~~~d~~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~ 260 (322)
.+-..-+.-+++.||+|-|..++..+.... .-+|-++-|++.+||++.+....
T Consensus 169 ~~~s~rLPfp~~~fDmvHcsrc~i~W~~~~-g~~l~evdRvLRpGGyfv~S~pp 221 (506)
T PF03141_consen 169 VLGSQRLPFPSNAFDMVHCSRCLIPWHPND-GFLLFEVDRVLRPGGYFVLSGPP 221 (506)
T ss_pred hhccccccCCccchhhhhcccccccchhcc-cceeehhhhhhccCceEEecCCc
Confidence 111122333489999999999988776533 25778888999888888775443
|
; GO: 0008168 methyltransferase activity |
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.5e-05 Score=76.07 Aligned_cols=109 Identities=15% Similarity=0.137 Sum_probs=80.4
Q ss_pred CCCCeEEEECCCcccchHHHHhc---CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC----CCC
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQ---GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL----DGK 219 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~~ 219 (322)
.++.+|||++||.|.=+.++++. ...++++|+++..++..++++...++.+ +.+...|...+ .+.
T Consensus 112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~n--------v~v~~~D~~~~~~~~~~~ 183 (470)
T PRK11933 112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSN--------VALTHFDGRVFGAALPET 183 (470)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCe--------EEEEeCchhhhhhhchhh
Confidence 47889999999999999999886 3479999999999999999999887754 35666776543 568
Q ss_pred ccEEE----Ecc--cccccCcch--------------HHHHHHHHHhccCCeEEEEECCChhhH
Q 020710 220 YDTVV----CLD--VLIHYPQSK--------------ADGMIAHLASLAEKRLILSFAPKTFYY 263 (322)
Q Consensus 220 fD~V~----~~~--~l~~~~~~~--------------~~~~l~~l~~~~~~~~il~~~~~~~~~ 263 (322)
||.|+ |+. ++..-|+.. -.++|+...+++++||++++...++..
T Consensus 184 fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~ 247 (470)
T PRK11933 184 FDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNR 247 (470)
T ss_pred cCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCH
Confidence 99999 543 232222110 146677777778888888776666444
|
|
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.18 E-value=4.4e-05 Score=64.77 Aligned_cols=98 Identities=14% Similarity=0.049 Sum_probs=79.2
Q ss_pred CCCeEEEECCCcccchHHHHhc---CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQ---GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
.++++||||.=||+.+...+.. +.+|+++|+++...+.+.+..+..+...++ +++++++.+-
T Consensus 73 ~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI-------~~i~g~a~esLd~l~~~~ 145 (237)
T KOG1663|consen 73 NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKI-------TFIEGPALESLDELLADG 145 (237)
T ss_pred CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhcccccee-------eeeecchhhhHHHHHhcC
Confidence 4679999999999999888876 789999999999999998888888877655 9999987553
Q ss_pred -CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEEC
Q 020710 217 -DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFA 257 (322)
Q Consensus 217 -~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~ 257 (322)
.++||.++. .|..+. ....+.++-++.+.|++|.+.
T Consensus 146 ~~~tfDfaFv----DadK~n-Y~~y~e~~l~Llr~GGvi~~D 182 (237)
T KOG1663|consen 146 ESGTFDFAFV----DADKDN-YSNYYERLLRLLRVGGVIVVD 182 (237)
T ss_pred CCCceeEEEE----ccchHH-HHHHHHHHHhhcccccEEEEe
Confidence 588999995 455443 457788888888888877664
|
|
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.16 E-value=6.8e-06 Score=77.11 Aligned_cols=105 Identities=25% Similarity=0.311 Sum_probs=77.5
Q ss_pred CCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-----C---C
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-----D---G 218 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-----~---~ 218 (322)
..+..+||+.||||.++..+++.-.+|+||+++++.+..|++++..+++.| ++|+++-++++ . +
T Consensus 382 ~~~k~llDv~CGTG~iglala~~~~~ViGvEi~~~aV~dA~~nA~~NgisN--------a~Fi~gqaE~~~~sl~~~~~~ 453 (534)
T KOG2187|consen 382 PADKTLLDVCCGTGTIGLALARGVKRVIGVEISPDAVEDAEKNAQINGISN--------ATFIVGQAEDLFPSLLTPCCD 453 (534)
T ss_pred CCCcEEEEEeecCCceehhhhccccceeeeecChhhcchhhhcchhcCccc--------eeeeecchhhccchhcccCCC
Confidence 456889999999999999999988899999999999999999999888765 69999966664 1 2
Q ss_pred CccEEEEcccccccCcchH-HHHHHHHHhcc--CCeEEEEECCChhhH
Q 020710 219 KYDTVVCLDVLIHYPQSKA-DGMIAHLASLA--EKRLILSFAPKTFYY 263 (322)
Q Consensus 219 ~fD~V~~~~~l~~~~~~~~-~~~l~~l~~~~--~~~~il~~~~~~~~~ 263 (322)
+-++|.. ..-|...+ ..+++.++... +...+++|++.+...
T Consensus 454 ~~~~v~i----iDPpR~Glh~~~ik~l~~~~~~~rlvyvSCn~~t~ar 497 (534)
T KOG2187|consen 454 SETLVAI----IDPPRKGLHMKVIKALRAYKNPRRLVYVSCNPHTAAR 497 (534)
T ss_pred CCceEEE----ECCCcccccHHHHHHHHhccCccceEEEEcCHHHhhh
Confidence 3343332 23333333 36677777653 555677887766443
|
|
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.16 E-value=1.5e-05 Score=71.03 Aligned_cols=104 Identities=14% Similarity=0.082 Sum_probs=76.4
Q ss_pred CCeEEEECCCcccchHHHHhcC--CEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC----CCCccE
Q 020710 149 GIAVCDAGCGTGSLAIPLAKQG--AIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL----DGKYDT 222 (322)
Q Consensus 149 ~~~VLDvGcG~G~~~~~la~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~~fD~ 222 (322)
+.+||-||.|.|..++.+.++. .+++.|||++..++.+++.+....... .=++++.+..|..+. ..+||+
T Consensus 77 pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~----~dpRv~i~i~Dg~~~v~~~~~~fDv 152 (282)
T COG0421 77 PKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGA----DDPRVEIIIDDGVEFLRDCEEKFDV 152 (282)
T ss_pred CCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCccccc----CCCceEEEeccHHHHHHhCCCcCCE
Confidence 3699999999999999999995 579999999999999999987643110 002338888887554 458999
Q ss_pred EEEcccccccCc-ch--HHHHHHHHHhccCCeEEEEEC
Q 020710 223 VVCLDVLIHYPQ-SK--ADGMIAHLASLAEKRLILSFA 257 (322)
Q Consensus 223 V~~~~~l~~~~~-~~--~~~~l~~l~~~~~~~~il~~~ 257 (322)
|++-..=. ... +. -..+++.+++.++++|+++..
T Consensus 153 Ii~D~tdp-~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 153 IIVDSTDP-VGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred EEEcCCCC-CCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 99754322 111 11 258999999988777777654
|
|
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.16 E-value=5.7e-05 Score=63.70 Aligned_cols=134 Identities=13% Similarity=0.207 Sum_probs=94.1
Q ss_pred HHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcC--CEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEc
Q 020710 134 VENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQG--AIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVK 211 (322)
Q Consensus 134 ~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (322)
+..+.+++.. +.++.||||-.+++..+|.+.+ ..++++|+++.-++.|.+++.+.++..++ +...+
T Consensus 7 L~~va~~V~~-----~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i-------~vr~~ 74 (226)
T COG2384 7 LTTVANLVKQ-----GARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERI-------DVRLG 74 (226)
T ss_pred HHHHHHHHHc-----CCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceE-------EEecc
Confidence 4566666665 4559999999999999999884 36999999999999999999998887655 77788
Q ss_pred ccccC---CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCCCCCccccccCCHH
Q 020710 212 DLESL---DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEA 288 (322)
Q Consensus 212 d~~~~---~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (322)
|.... +..+|+|+..++- -.....++++-..-+++---+++-|+. ...
T Consensus 75 dgl~~l~~~d~~d~ivIAGMG----G~lI~~ILee~~~~l~~~~rlILQPn~-------------------------~~~ 125 (226)
T COG2384 75 DGLAVLELEDEIDVIVIAGMG----GTLIREILEEGKEKLKGVERLILQPNI-------------------------HTY 125 (226)
T ss_pred CCccccCccCCcCEEEEeCCc----HHHHHHHHHHhhhhhcCcceEEECCCC-------------------------CHH
Confidence 86443 5579999876543 222456666655544432222222221 356
Q ss_pred HHHHHHHHCCCEEEEEeeee
Q 020710 289 DVERALQKVGWKIRKRGLIT 308 (322)
Q Consensus 289 ~~~~~l~~aGf~vv~~~~~~ 308 (322)
+++++|...+|+++......
T Consensus 126 ~LR~~L~~~~~~I~~E~ile 145 (226)
T COG2384 126 ELREWLSANSYEIKAETILE 145 (226)
T ss_pred HHHHHHHhCCceeeeeeeec
Confidence 88888999999877754443
|
|
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=98.12 E-value=1.5e-05 Score=67.75 Aligned_cols=118 Identities=19% Similarity=0.148 Sum_probs=60.7
Q ss_pred HHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc-CCE-EEEEeCCHHHHHHHHHHhHHhhhc-cCCCCCCCCCceEE
Q 020710 134 VENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ-GAI-VSASDISAAMVAEARKKAEEELLA-DNGGEAPVMPKFEV 210 (322)
Q Consensus 134 ~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~-~~~-v~gvD~s~~~l~~a~~~~~~~~~~-~~~~~~~~~~~~~~ 210 (322)
+..+++.+. ..++...+|+|||.|......+-. +++ .+|||+.+...+.|+......... ...+.....+++..
T Consensus 31 ~~~il~~~~---l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~ 107 (205)
T PF08123_consen 31 VSKILDELN---LTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIH 107 (205)
T ss_dssp HHHHHHHTT-----TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEEC
T ss_pred HHHHHHHhC---CCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeec
Confidence 344555544 347889999999999998777655 665 999999999888887544321100 00011122346778
Q ss_pred cccccC------CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEE
Q 020710 211 KDLESL------DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSF 256 (322)
Q Consensus 211 ~d~~~~------~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~ 256 (322)
+|+.+. -...|+|++++.+ ++++....+.+.+..+.++-.||..
T Consensus 108 gdfl~~~~~~~~~s~AdvVf~Nn~~--F~~~l~~~L~~~~~~lk~G~~IIs~ 157 (205)
T PF08123_consen 108 GDFLDPDFVKDIWSDADVVFVNNTC--FDPDLNLALAELLLELKPGARIIST 157 (205)
T ss_dssp S-TTTHHHHHHHGHC-SEEEE--TT--T-HHHHHHHHHHHTTS-TT-EEEES
T ss_pred cCccccHhHhhhhcCCCEEEEeccc--cCHHHHHHHHHHHhcCCCCCEEEEC
Confidence 887653 1457999998864 3333233443333334344445543
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.11 E-value=3.6e-05 Score=67.42 Aligned_cols=158 Identities=21% Similarity=0.185 Sum_probs=88.8
Q ss_pred HHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc-CCEEEEEeCCHHHHHHHHHHhHHhhhcc---C-------CC-CC-
Q 020710 136 NTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ-GAIVSASDISAAMVAEARKKAEEELLAD---N-------GG-EA- 202 (322)
Q Consensus 136 ~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~---~-------~~-~~- 202 (322)
.+.+.+... ..++.++||||||.-..-..-+.. .-+++..|.++.-++..++.+.+.+.-+ - -+ ..
T Consensus 45 ~l~~~f~~g-~~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~ 123 (256)
T PF01234_consen 45 NLHETFSSG-GVKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREK 123 (256)
T ss_dssp HHHHHHHTS-SS-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSG
T ss_pred HHHHHhCcc-CcCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcch
Confidence 344444432 345779999999986553322322 4469999999999887776554321100 0 00 00
Q ss_pred --------CCC-CceEEcccccC---------CCCccEEEEcccccccCc--chHHHHHHHHHhccCCeEEEEEC---CC
Q 020710 203 --------PVM-PKFEVKDLESL---------DGKYDTVVCLDVLIHYPQ--SKADGMIAHLASLAEKRLILSFA---PK 259 (322)
Q Consensus 203 --------~~~-~~~~~~d~~~~---------~~~fD~V~~~~~l~~~~~--~~~~~~l~~l~~~~~~~~il~~~---~~ 259 (322)
... -.++..|+... +.+||+|++..+|+.... ++....++++.+++++||.+++. ..
T Consensus 124 ~~e~e~~lR~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~ 203 (256)
T PF01234_consen 124 WEEKEEKLRRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGS 203 (256)
T ss_dssp HHHHHHHHHHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-
T ss_pred hhhHHHHHHHhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCc
Confidence 000 03555666443 235999999999998763 44678888888888888766542 22
Q ss_pred hhhHHHHHHhhccCCCCCCccccccCCHHHHHHHHHHCCCEEEEEe
Q 020710 260 TFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQKVGWKIRKRG 305 (322)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~vv~~~ 305 (322)
++| .. + .........+.+.+++.|+++||.+++.+
T Consensus 204 t~Y---------~v-G-~~~F~~l~l~ee~v~~al~~aG~~i~~~~ 238 (256)
T PF01234_consen 204 TYY---------MV-G-GHKFPCLPLNEEFVREALEEAGFDIEDLE 238 (256)
T ss_dssp SEE---------EE-T-TEEEE---B-HHHHHHHHHHTTEEEEEEE
T ss_pred eeE---------EE-C-CEecccccCCHHHHHHHHHHcCCEEEecc
Confidence 211 00 1 11122334589999999999999999877
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.08 E-value=1.4e-05 Score=77.47 Aligned_cols=103 Identities=19% Similarity=0.145 Sum_probs=76.5
Q ss_pred CCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-----CCCc
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-----DGKY 220 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-----~~~f 220 (322)
.+..+||||||.|.++..+|.. ...++|+|++...+..+.++....++.| +.+.+.|+..+ ++++
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N--------~~~~~~~~~~~~~~~~~~sv 418 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITN--------FLLFPNNLDLILNDLPNNSL 418 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCe--------EEEEcCCHHHHHHhcCcccc
Confidence 4668999999999999999988 4579999999999998888877766654 35677776433 6889
Q ss_pred cEEEEcccccccCcch------HHHHHHHHHhccCCeEEEEECC
Q 020710 221 DTVVCLDVLIHYPQSK------ADGMIAHLASLAEKRLILSFAP 258 (322)
Q Consensus 221 D~V~~~~~l~~~~~~~------~~~~l~~l~~~~~~~~il~~~~ 258 (322)
|.|++++.=-|..... -..+++.+++++++|+.+.+..
T Consensus 419 ~~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~T 462 (506)
T PRK01544 419 DGIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFAS 462 (506)
T ss_pred cEEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEc
Confidence 9999754432222111 2578999999888777776643
|
|
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.08 E-value=1.2e-05 Score=66.32 Aligned_cols=103 Identities=28% Similarity=0.351 Sum_probs=79.3
Q ss_pred CCCCeEEEECCCcccchHHHHhcCCE-EEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccCCCCccEEEE
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQGAI-VSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESLDGKYDTVVC 225 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~~~~-v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~fD~V~~ 225 (322)
-.+++|||+|+|.|.-++..++.|+. |+..|+.|..++..+-+.+.++... .|...|+-..+..||+|+.
T Consensus 78 VrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~i---------~~~~~d~~g~~~~~Dl~La 148 (218)
T COG3897 78 VRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVSI---------LFTHADLIGSPPAFDLLLA 148 (218)
T ss_pred cccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhcccee---------EEeeccccCCCcceeEEEe
Confidence 46889999999999999999999874 9999999999888888888777654 8888887766789999999
Q ss_pred cccccccCcchHHHHHHHHHhcc-CCeEEEEECCCh
Q 020710 226 LDVLIHYPQSKADGMIAHLASLA-EKRLILSFAPKT 260 (322)
Q Consensus 226 ~~~l~~~~~~~~~~~l~~l~~~~-~~~~il~~~~~~ 260 (322)
..++..-+. ...++.-..++. +|..++...|..
T Consensus 149 gDlfy~~~~--a~~l~~~~~~l~~~g~~vlvgdp~R 182 (218)
T COG3897 149 GDLFYNHTE--ADRLIPWKDRLAEAGAAVLVGDPGR 182 (218)
T ss_pred eceecCchH--HHHHHHHHHHHHhCCCEEEEeCCCC
Confidence 998755443 446666444443 444456666544
|
|
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.05 E-value=6.1e-05 Score=69.03 Aligned_cols=103 Identities=21% Similarity=0.220 Sum_probs=75.6
Q ss_pred CCCCeEEEECCCcccchHHHHhcCC-----------------------------------------EEEEEeCCHHHHHH
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQGA-----------------------------------------IVSASDISAAMVAE 185 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~~~-----------------------------------------~v~gvD~s~~~l~~ 185 (322)
.++..++|-=||+|.+.+..+..+. .++|+|+++.|++.
T Consensus 190 ~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~ 269 (381)
T COG0116 190 KPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEG 269 (381)
T ss_pred CCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHH
Confidence 4557899999999999988876542 37799999999999
Q ss_pred HHHHhHHhhhccCCCCCCCCCceEEcccccC--C-CCccEEEEccccc-ccCcch-----HHHHHHHHHhccCCeEEEEE
Q 020710 186 ARKKAEEELLADNGGEAPVMPKFEVKDLESL--D-GKYDTVVCLDVLI-HYPQSK-----ADGMIAHLASLAEKRLILSF 256 (322)
Q Consensus 186 a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~-~~fD~V~~~~~l~-~~~~~~-----~~~~l~~l~~~~~~~~il~~ 256 (322)
|+.++...++.+.+ .|.++|+..+ + +.+|+|+|+--.- -+.++. ...+.+.+++.+++....++
T Consensus 270 Ak~NA~~AGv~d~I-------~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~ 342 (381)
T COG0116 270 AKANARAAGVGDLI-------EFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWSRYVF 342 (381)
T ss_pred HHHHHHhcCCCceE-------EEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCceEEE
Confidence 99999999988755 9999999887 3 6899999975431 122221 23444555555555444443
|
|
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.04 E-value=8.1e-05 Score=65.78 Aligned_cols=151 Identities=19% Similarity=0.157 Sum_probs=90.2
Q ss_pred CCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhc-------------------cCC-CCCCC---
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLA-------------------DNG-GEAPV--- 204 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~-------------------~~~-~~~~~--- 204 (322)
.+.+||--|||.|+++..|+..|...-|-++|--|+-...=.+...... +++ .+.++
T Consensus 150 ~ki~iLvPGaGlGRLa~dla~~G~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~~ 229 (369)
T KOG2798|consen 150 TKIRILVPGAGLGRLAYDLACLGFKCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDIH 229 (369)
T ss_pred cCceEEecCCCchhHHHHHHHhcccccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCcccc
Confidence 4568999999999999999999999999999988875433222110001 110 00000
Q ss_pred -------CCce--EEcccccC------CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEE-ECCChhhHHHHHH
Q 020710 205 -------MPKF--EVKDLESL------DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILS-FAPKTFYYDLLKR 268 (322)
Q Consensus 205 -------~~~~--~~~d~~~~------~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~-~~~~~~~~~~~~~ 268 (322)
.-.| -.+|+.+. .+.||+|+.+..+.--.. +-+.++.+.+++++||+.+ +.|-. +.+-..
T Consensus 230 p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~N--ileYi~tI~~iLk~GGvWiNlGPLl--YHF~d~ 305 (369)
T KOG2798|consen 230 PASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAHN--ILEYIDTIYKILKPGGVWINLGPLL--YHFEDT 305 (369)
T ss_pred ccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeechHH--HHHHHHHHHHhccCCcEEEecccee--eeccCC
Confidence 1122 33565543 357999998755432222 5678888888887777664 33311 111000
Q ss_pred hhccCCCCCCccccccCCHHHHHHHHHHCCCEEEEEeeee
Q 020710 269 VGELFPGPSKATRAYLHAEADVERALQKVGWKIRKRGLIT 308 (322)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~vv~~~~~~ 308 (322)
.+. ......-++-+++..+...-||++++.+.+.
T Consensus 306 -----~g~-~~~~siEls~edl~~v~~~~GF~~~ke~~Id 339 (369)
T KOG2798|consen 306 -----HGV-ENEMSIELSLEDLKRVASHRGFEVEKERGID 339 (369)
T ss_pred -----CCC-cccccccccHHHHHHHHHhcCcEEEEeeeee
Confidence 000 0011123478999999999999999877554
|
|
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00014 Score=60.85 Aligned_cols=122 Identities=20% Similarity=0.157 Sum_probs=87.7
Q ss_pred eEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEccccc--CCCCccEEEEc
Q 020710 151 AVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLES--LDGKYDTVVCL 226 (322)
Q Consensus 151 ~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~--~~~~fD~V~~~ 226 (322)
+++|||+|.|.-+..|+=. ..+++-+|.+..-+...+.-..+.++.| +++++..+++ ...+||+|++-
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~n--------v~v~~~R~E~~~~~~~fd~v~aR 122 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSN--------VEVINGRAEEPEYRESFDVVTAR 122 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SS--------EEEEES-HHHTTTTT-EEEEEEE
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCC--------EEEEEeeecccccCCCccEEEee
Confidence 7999999999999998765 6789999999999999888888888764 4888999888 48999999997
Q ss_pred ccccccCcchHHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCCCCCccccccCCHHHHHHHHHHCCCEEEEEee
Q 020710 227 DVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQKVGWKIRKRGL 306 (322)
Q Consensus 227 ~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~vv~~~~ 306 (322)
.+- + +..+++.+..++++++.+.+.......+ ..++.++.+...|.++..+..
T Consensus 123 Av~----~--l~~l~~~~~~~l~~~G~~l~~KG~~~~~---------------------El~~~~~~~~~~~~~~~~v~~ 175 (184)
T PF02527_consen 123 AVA----P--LDKLLELARPLLKPGGRLLAYKGPDAEE---------------------ELEEAKKAWKKLGLKVLSVPE 175 (184)
T ss_dssp SSS----S--HHHHHHHHGGGEEEEEEEEEEESS--HH---------------------HHHTHHHHHHCCCEEEEEEEE
T ss_pred hhc----C--HHHHHHHHHHhcCCCCEEEEEcCCChHH---------------------HHHHHHhHHHHhCCEEeeecc
Confidence 654 3 6688888888777777665433221111 123455666677777766544
Q ss_pred e
Q 020710 307 I 307 (322)
Q Consensus 307 ~ 307 (322)
.
T Consensus 176 ~ 176 (184)
T PF02527_consen 176 F 176 (184)
T ss_dssp E
T ss_pred c
Confidence 3
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00029 Score=60.03 Aligned_cols=168 Identities=20% Similarity=0.146 Sum_probs=105.9
Q ss_pred HHHHHHhchhhHHHHHHHhcCCCcccchhhhhhcCchhHHHHHHHHhhhcCCCC--CCeEEEECCCcccchHHHHhc--C
Q 020710 95 EVVREYFNNSGFQRWKKIYGETDDVNRVQLDIRLGHSKTVENTMQMLNDEGSLK--GIAVCDAGCGTGSLAIPLAKQ--G 170 (322)
Q Consensus 95 ~~v~~~f~~~~~~~w~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~VLDvGcG~G~~~~~la~~--~ 170 (322)
+.+..|++-. ..|-+.|+-..-.+.. +.....+++.+......+ +.+++|||+|.|.-+..++-. .
T Consensus 22 ~~l~~Y~~lL--~~wN~~~NLt~~~~~~--------e~~~rHilDSl~~~~~~~~~~~~~~DIGSGaGfPGipLAI~~p~ 91 (215)
T COG0357 22 EKLEAYVELL--LKWNKAYNLTAIRDPE--------ELWQRHILDSLVLLPYLDGKAKRVLDIGSGAGFPGIPLAIAFPD 91 (215)
T ss_pred HHHHHHHHHH--HHhhHhcCCCCCCCHH--------HHHHHHHHHHhhhhhcccccCCEEEEeCCCCCCchhhHHHhccC
Confidence 3445566543 4666666643322211 112244444444332122 589999999999999998733 5
Q ss_pred CEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccCC--CC-ccEEEEcccccccCcchHHHHHHHHHhc
Q 020710 171 AIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESLD--GK-YDTVVCLDVLIHYPQSKADGMIAHLASL 247 (322)
Q Consensus 171 ~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~-fD~V~~~~~l~~~~~~~~~~~l~~l~~~ 247 (322)
.+|+-+|....-+.-.++-..+.++.| +.++++.+++.. .. ||+|++-.+- + +..+..-+..+
T Consensus 92 ~~vtLles~~Kk~~FL~~~~~eL~L~n--------v~i~~~RaE~~~~~~~~~D~vtsRAva----~--L~~l~e~~~pl 157 (215)
T COG0357 92 LKVTLLESLGKKIAFLREVKKELGLEN--------VEIVHGRAEEFGQEKKQYDVVTSRAVA----S--LNVLLELCLPL 157 (215)
T ss_pred CcEEEEccCchHHHHHHHHHHHhCCCC--------eEEehhhHhhcccccccCcEEEeehcc----c--hHHHHHHHHHh
Confidence 679999999998888888888887764 488888888873 34 9999986654 2 55666666666
Q ss_pred cCCeEEEEECCChhhHHHHHHhhccCCCCCCccccccCCHHHHHHHHHHCCCEEEEEeee
Q 020710 248 AEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQKVGWKIRKRGLI 307 (322)
Q Consensus 248 ~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~vv~~~~~ 307 (322)
++.++.+........ .. -..+.++.....|+.++.+...
T Consensus 158 lk~~g~~~~~k~~~~------------------~~---e~~e~~~a~~~~~~~~~~~~~~ 196 (215)
T COG0357 158 LKVGGGFLAYKGLAG------------------KD---ELPEAEKAILPLGGQVEKVFSL 196 (215)
T ss_pred cccCCcchhhhHHhh------------------hh---hHHHHHHHHHhhcCcEEEEEEe
Confidence 655443322110000 00 1357778888888888775444
|
|
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.0002 Score=62.12 Aligned_cols=107 Identities=24% Similarity=0.311 Sum_probs=82.1
Q ss_pred HHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc---CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEc
Q 020710 135 ENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ---GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVK 211 (322)
Q Consensus 135 ~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (322)
..++.+|.-. ++.+|||-|.|+|.++..+++. -.+++..|+-+.-.+.|.+.+++.++.+.+ ++...
T Consensus 95 a~I~~~L~i~---PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~v-------t~~hr 164 (314)
T KOG2915|consen 95 AMILSMLEIR---PGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNV-------TVTHR 164 (314)
T ss_pred HHHHHHhcCC---CCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcce-------EEEEe
Confidence 4666777655 7999999999999999999988 257999999999999999999999987655 88888
Q ss_pred ccccC-----CCCccEEEEcccccccCcchHHHHHHHHHhcc--CCeEEEEECC
Q 020710 212 DLESL-----DGKYDTVVCLDVLIHYPQSKADGMIAHLASLA--EKRLILSFAP 258 (322)
Q Consensus 212 d~~~~-----~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~--~~~~il~~~~ 258 (322)
|+... ...+|.|+. .+|.|. ..+-++.+.+ +++.++.|.|
T Consensus 165 DVc~~GF~~ks~~aDaVFL-----DlPaPw--~AiPha~~~lk~~g~r~csFSP 211 (314)
T KOG2915|consen 165 DVCGSGFLIKSLKADAVFL-----DLPAPW--EAIPHAAKILKDEGGRLCSFSP 211 (314)
T ss_pred ecccCCccccccccceEEE-----cCCChh--hhhhhhHHHhhhcCceEEeccH
Confidence 88664 578999985 666654 5555555543 4445666654
|
|
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=98.00 E-value=5e-05 Score=70.53 Aligned_cols=89 Identities=20% Similarity=0.260 Sum_probs=65.9
Q ss_pred CCeEEEECCCcccchHHHHhc--CC-EEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC----CCCcc
Q 020710 149 GIAVCDAGCGTGSLAIPLAKQ--GA-IVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL----DGKYD 221 (322)
Q Consensus 149 ~~~VLDvGcG~G~~~~~la~~--~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~~fD 221 (322)
+.+|||+.||+|..+..++.+ |. +|+++|+++.+++.+++++..++..+ +++.+.|+... ..+||
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~--------~~v~~~Da~~~l~~~~~~fD 116 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVEN--------IEVPNEDAANVLRYRNRKFH 116 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc--------EEEEchhHHHHHHHhCCCCC
Confidence 358999999999999999987 44 69999999999999999997765432 37888887765 36799
Q ss_pred EEEEcccccccCcchHHHHHHHHHhccCCe
Q 020710 222 TVVCLDVLIHYPQSKADGMIAHLASLAEKR 251 (322)
Q Consensus 222 ~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~ 251 (322)
+|...- + ..+. .++..+.+....+
T Consensus 117 vIdlDP-f-Gs~~----~fld~al~~~~~~ 140 (374)
T TIGR00308 117 VIDIDP-F-GTPA----PFVDSAIQASAER 140 (374)
T ss_pred EEEeCC-C-CCcH----HHHHHHHHhcccC
Confidence 998754 3 3333 4555554433333
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=97.98 E-value=6.8e-05 Score=66.57 Aligned_cols=97 Identities=19% Similarity=0.203 Sum_probs=68.6
Q ss_pred hHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEc
Q 020710 132 KTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVK 211 (322)
Q Consensus 132 ~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (322)
...+++++.+... ++..|||||+|.|.++..|++.+.+|+++|+++.+++..++++.... +++++.+
T Consensus 17 ~~~~~Iv~~~~~~---~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~~~~~L~~~~~~~~----------~~~vi~~ 83 (262)
T PF00398_consen 17 NIADKIVDALDLS---EGDTVLEIGPGPGALTRELLKRGKRVIAVEIDPDLAKHLKERFASNP----------NVEVING 83 (262)
T ss_dssp HHHHHHHHHHTCG---TTSEEEEESSTTSCCHHHHHHHSSEEEEEESSHHHHHHHHHHCTTCS----------SEEEEES
T ss_pred HHHHHHHHhcCCC---CCCEEEEeCCCCccchhhHhcccCcceeecCcHhHHHHHHHHhhhcc----------cceeeec
Confidence 3456677776543 68899999999999999999999999999999999999988775211 1378899
Q ss_pred ccccCC------CCccEEEEcccccccCcchHHHHHHHHHh
Q 020710 212 DLESLD------GKYDTVVCLDVLIHYPQSKADGMIAHLAS 246 (322)
Q Consensus 212 d~~~~~------~~fD~V~~~~~l~~~~~~~~~~~l~~l~~ 246 (322)
|+...+ +....|+++--. ++. ..++.++..
T Consensus 84 D~l~~~~~~~~~~~~~~vv~NlPy-~is----~~il~~ll~ 119 (262)
T PF00398_consen 84 DFLKWDLYDLLKNQPLLVVGNLPY-NIS----SPILRKLLE 119 (262)
T ss_dssp -TTTSCGGGHCSSSEEEEEEEETG-TGH----HHHHHHHHH
T ss_pred chhccccHHhhcCCceEEEEEecc-cch----HHHHHHHhh
Confidence 988763 234456654332 332 355555544
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.98 E-value=5.3e-05 Score=64.70 Aligned_cols=153 Identities=18% Similarity=0.185 Sum_probs=88.4
Q ss_pred HHHHHHhhhcC-CCCCCeEEEECCCcccchHHHHhcCC-EEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcc
Q 020710 135 ENTMQMLNDEG-SLKGIAVCDAGCGTGSLAIPLAKQGA-IVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKD 212 (322)
Q Consensus 135 ~~~~~~l~~~~-~~~~~~VLDvGcG~G~~~~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d 212 (322)
.++...+.... ..++..+||||+.||.|+..+.++|+ +|+|+|..-.++..--+.-. |+ +.+...|
T Consensus 65 ~KL~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~d~------rV------~~~E~tN 132 (245)
T COG1189 65 LKLEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRNDP------RV------IVLERTN 132 (245)
T ss_pred HHHHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhcCC------cE------EEEecCC
Confidence 34444444332 25788999999999999999999977 59999998877654322211 11 1334444
Q ss_pred cccC-----CCCccEEEEcccccccCcchHHHHHHHHHhccCCe-EEEEECCChhhHHHHHHhhccCCCCCCccccccCC
Q 020710 213 LESL-----DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKR-LILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHA 286 (322)
Q Consensus 213 ~~~~-----~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~-~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (322)
+..+ .+..|+++|--++.. +..+|-.+..++.++ -++.+..+.+--. -+.++ -.+.-........-
T Consensus 133 ~r~l~~~~~~~~~d~~v~DvSFIS-----L~~iLp~l~~l~~~~~~~v~LvKPQFEag-r~~v~--kkGvv~d~~~~~~v 204 (245)
T COG1189 133 VRYLTPEDFTEKPDLIVIDVSFIS-----LKLILPALLLLLKDGGDLVLLVKPQFEAG-REQVG--KKGVVRDPKLHAEV 204 (245)
T ss_pred hhhCCHHHcccCCCeEEEEeehhh-----HHHHHHHHHHhcCCCceEEEEecchhhhh-hhhcC--cCceecCcchHHHH
Confidence 4433 457899998766543 456777777766544 3333333222100 01111 00111111111224
Q ss_pred HHHHHHHHHHCCCEEEEEeee
Q 020710 287 EADVERALQKVGWKIRKRGLI 307 (322)
Q Consensus 287 ~~~~~~~l~~aGf~vv~~~~~ 307 (322)
...+++++.+.||.+......
T Consensus 205 ~~~i~~~~~~~g~~~~gl~~S 225 (245)
T COG1189 205 LSKIENFAKELGFQVKGLIKS 225 (245)
T ss_pred HHHHHHHHhhcCcEEeeeEcc
Confidence 678899999999998875443
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00015 Score=73.18 Aligned_cols=75 Identities=32% Similarity=0.427 Sum_probs=61.7
Q ss_pred CCCeEEEECCCcccchHHHHhc--------------------------------------------CCEEEEEeCCHHHH
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQ--------------------------------------------GAIVSASDISAAMV 183 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~--------------------------------------------~~~v~gvD~s~~~l 183 (322)
++..++|.+||+|.+.+..+.. ..+++|+|+++.++
T Consensus 190 ~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av 269 (702)
T PRK11783 190 EGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVI 269 (702)
T ss_pred CCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHH
Confidence 4679999999999999877541 12689999999999
Q ss_pred HHHHHHhHHhhhccCCCCCCCCCceEEcccccC-----CCCccEEEEcccc
Q 020710 184 AEARKKAEEELLADNGGEAPVMPKFEVKDLESL-----DGKYDTVVCLDVL 229 (322)
Q Consensus 184 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-----~~~fD~V~~~~~l 229 (322)
+.|++++...++.+.+ .|.++|+.++ .++||+|+++--+
T Consensus 270 ~~A~~N~~~~g~~~~i-------~~~~~D~~~~~~~~~~~~~d~IvtNPPY 313 (702)
T PRK11783 270 QAARKNARRAGVAELI-------TFEVKDVADLKNPLPKGPTGLVISNPPY 313 (702)
T ss_pred HHHHHHHHHcCCCcce-------EEEeCChhhcccccccCCCCEEEECCCC
Confidence 9999999998886544 8999998775 2569999998644
|
|
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=97.78 E-value=5.4e-05 Score=63.25 Aligned_cols=47 Identities=23% Similarity=0.265 Sum_probs=35.2
Q ss_pred HHHHHHhhhcC-CC--CCCeEEEECCCcccchHHHHhcC---CEEEEEeCCHH
Q 020710 135 ENTMQMLNDEG-SL--KGIAVCDAGCGTGSLAIPLAKQG---AIVSASDISAA 181 (322)
Q Consensus 135 ~~~~~~l~~~~-~~--~~~~VLDvGcG~G~~~~~la~~~---~~v~gvD~s~~ 181 (322)
-++.+.+...+ .. ++.+|||+||++|.++..+.+++ .+|+|+|+.+.
T Consensus 7 ~KL~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~ 59 (181)
T PF01728_consen 7 FKLYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM 59 (181)
T ss_dssp HHHHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST
T ss_pred HHHHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEecccc
Confidence 34455554443 12 45899999999999999999997 78999999875
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00022 Score=56.81 Aligned_cols=92 Identities=34% Similarity=0.405 Sum_probs=59.8
Q ss_pred EEEECCCcccchHHHHhc---CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEccccc--C--C--CCccE
Q 020710 152 VCDAGCGTGSLAIPLAKQ---GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLES--L--D--GKYDT 222 (322)
Q Consensus 152 VLDvGcG~G~~~~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~--~--~--~~fD~ 222 (322)
++|+|||+|... .+... +..++++|+++.++..++..... ..... +.+...|... . . ..||+
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~-------~~~~~~~~~~~~~~~~~~~~~d~ 122 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG-AGLGL-------VDFVVADALGGVLPFEDSASFDL 122 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-cCCCc-------eEEEEeccccCCCCCCCCCceeE
Confidence 999999999966 33333 35899999999999985544432 21100 1567777554 2 3 37999
Q ss_pred EEEcccccccCcchHHHHHHHHHhccCCeEEEE
Q 020710 223 VVCLDVLIHYPQSKADGMIAHLASLAEKRLILS 255 (322)
Q Consensus 223 V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~ 255 (322)
+ +.....+... ....+..+.+.+++++.+.
T Consensus 123 ~-~~~~~~~~~~--~~~~~~~~~~~l~~~g~~~ 152 (257)
T COG0500 123 V-ISLLVLHLLP--PAKALRELLRVLKPGGRLV 152 (257)
T ss_pred E-eeeeehhcCC--HHHHHHHHHHhcCCCcEEE
Confidence 9 5555544444 4578888888765555443
|
|
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00014 Score=66.19 Aligned_cols=88 Identities=19% Similarity=0.266 Sum_probs=57.7
Q ss_pred HHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHh---------cCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCC
Q 020710 133 TVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAK---------QGAIVSASDISAAMVAEARKKAEEELLADNGGEAP 203 (322)
Q Consensus 133 ~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~---------~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~ 203 (322)
.++.+.+++... ++.+|||.+||+|.++..+.+ ...+++|+|+++.++..++-++.-.+....
T Consensus 34 i~~l~~~~~~~~---~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~----- 105 (311)
T PF02384_consen 34 IVDLMVKLLNPK---KGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNS----- 105 (311)
T ss_dssp HHHHHHHHHTT----TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCB-----
T ss_pred HHHHHHhhhhcc---ccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccc-----
Confidence 445555666433 566899999999999888776 356899999999999999877755554431
Q ss_pred CCCceEEcccccC-----CCCccEEEEcccc
Q 020710 204 VMPKFEVKDLESL-----DGKYDTVVCLDVL 229 (322)
Q Consensus 204 ~~~~~~~~d~~~~-----~~~fD~V~~~~~l 229 (322)
...+..+|.... ...||+|+++--+
T Consensus 106 -~~~i~~~d~l~~~~~~~~~~~D~ii~NPPf 135 (311)
T PF02384_consen 106 -NINIIQGDSLENDKFIKNQKFDVIIGNPPF 135 (311)
T ss_dssp -GCEEEES-TTTSHSCTST--EEEEEEE--C
T ss_pred -cccccccccccccccccccccccccCCCCc
Confidence 113677775433 3689999997544
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00049 Score=60.96 Aligned_cols=101 Identities=26% Similarity=0.248 Sum_probs=59.9
Q ss_pred CCCeEEEECCCcccc-hHHHHhc---CCEEEEEeCCHHHHHHHHHHhH-HhhhccCCCCCCCCCceEEcccccC---CCC
Q 020710 148 KGIAVCDAGCGTGSL-AIPLAKQ---GAIVSASDISAAMVAEARKKAE-EELLADNGGEAPVMPKFEVKDLESL---DGK 219 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~-~~~la~~---~~~v~gvD~s~~~l~~a~~~~~-~~~~~~~~~~~~~~~~~~~~d~~~~---~~~ 219 (322)
.+.+|+=||||.==+ +..++++ +..|+++|+++++++.+++... ..++..++ .|+++|..+. -..
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m-------~f~~~d~~~~~~dl~~ 192 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRM-------SFITADVLDVTYDLKE 192 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSE-------EEEES-GGGG-GG---
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCe-------EEEecchhcccccccc
Confidence 356999999996544 4455544 5679999999999999998877 55666655 8999998766 268
Q ss_pred ccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEE
Q 020710 220 YDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSF 256 (322)
Q Consensus 220 fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~ 256 (322)
||+|+..... -+..+...++++++.+..++|..+.+
T Consensus 193 ~DvV~lAalV-g~~~e~K~~Il~~l~~~m~~ga~l~~ 228 (276)
T PF03059_consen 193 YDVVFLAALV-GMDAEPKEEILEHLAKHMAPGARLVV 228 (276)
T ss_dssp -SEEEE-TT--S----SHHHHHHHHHHHS-TTSEEEE
T ss_pred CCEEEEhhhc-ccccchHHHHHHHHHhhCCCCcEEEE
Confidence 9999987655 33333467999999998776666554
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00016 Score=57.82 Aligned_cols=60 Identities=18% Similarity=0.203 Sum_probs=47.1
Q ss_pred eEEEECCCcccchHHHHhcC--CEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccCCC
Q 020710 151 AVCDAGCGTGSLAIPLAKQG--AIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESLDG 218 (322)
Q Consensus 151 ~VLDvGcG~G~~~~~la~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 218 (322)
++||||||.|.++..+++.+ ++++++|+++.+.+.+++++...+..+ +.++...+.+-++
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~--------v~~~~~al~~~~g 62 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPN--------VVLLNAAVGDRDG 62 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCc--------EEEEEeeeeCCCC
Confidence 48999999999999998884 469999999999999999987665432 2666666554433
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00051 Score=61.45 Aligned_cols=93 Identities=16% Similarity=0.228 Sum_probs=49.4
Q ss_pred HHHHHHhhhcC--CCCCCeEEEECCCcccchHHHH--hcCCEEEEEeCCHHHHHHHHHHhHHh-hhccCCCCCCCCCceE
Q 020710 135 ENTMQMLNDEG--SLKGIAVCDAGCGTGSLAIPLA--KQGAIVSASDISAAMVAEARKKAEEE-LLADNGGEAPVMPKFE 209 (322)
Q Consensus 135 ~~~~~~l~~~~--~~~~~~VLDvGcG~G~~~~~la--~~~~~v~gvD~s~~~l~~a~~~~~~~-~~~~~~~~~~~~~~~~ 209 (322)
..+.++|.... .....++||||||....=..|. ..+++++|+|+++..++.|+++...+ .+..++ ..+
T Consensus 87 ~~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I-------~l~ 159 (299)
T PF05971_consen 87 HWIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRI-------ELR 159 (299)
T ss_dssp HHHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTE-------EEE
T ss_pred HHHHHHhhccccccccceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccce-------EEE
Confidence 44455555432 1125689999999875533333 23999999999999999999999887 776644 444
Q ss_pred Ecc----ccc-C---CCCccEEEEcccccccCc
Q 020710 210 VKD----LES-L---DGKYDTVVCLDVLIHYPQ 234 (322)
Q Consensus 210 ~~d----~~~-~---~~~fD~V~~~~~l~~~~~ 234 (322)
... +.. . ...||+.+|+--++.-.+
T Consensus 160 ~~~~~~~i~~~i~~~~e~~dftmCNPPFy~s~~ 192 (299)
T PF05971_consen 160 KQKNPDNIFDGIIQPNERFDFTMCNPPFYSSQE 192 (299)
T ss_dssp E--ST-SSTTTSTT--S-EEEEEE-----SS--
T ss_pred EcCCccccchhhhcccceeeEEecCCccccChh
Confidence 332 111 1 468999999988755443
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00056 Score=59.34 Aligned_cols=81 Identities=17% Similarity=0.056 Sum_probs=60.1
Q ss_pred eEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCC-CCCceEEcccccC----CCCccEEEE
Q 020710 151 AVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAP-VMPKFEVKDLESL----DGKYDTVVC 225 (322)
Q Consensus 151 ~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~----~~~fD~V~~ 225 (322)
+|||+-+|+|..++.++..|++|+++|-++.+....++.+........+.... .++..+.+|..+. ...||+|++
T Consensus 91 ~VLD~TAGlG~Da~~las~G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~~~fDVVYl 170 (250)
T PRK10742 91 DVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQVVYL 170 (250)
T ss_pred EEEECCCCccHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCCCCCcEEEE
Confidence 89999999999999999999999999999999988888776531110000000 1237778886554 457999998
Q ss_pred cccccc
Q 020710 226 LDVLIH 231 (322)
Q Consensus 226 ~~~l~~ 231 (322)
--.+.|
T Consensus 171 DPMfp~ 176 (250)
T PRK10742 171 DPMFPH 176 (250)
T ss_pred CCCCCC
Confidence 776665
|
|
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0014 Score=59.33 Aligned_cols=102 Identities=16% Similarity=0.133 Sum_probs=69.3
Q ss_pred CCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC----CCCccE
Q 020710 149 GIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL----DGKYDT 222 (322)
Q Consensus 149 ~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~~fD~ 222 (322)
..+||-+|.|.|.-.+.+.+. -.+++-||++|+|++.+++...-...+ .-...-++++.+..|+.+. ...||.
T Consensus 290 a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N-~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~ 368 (508)
T COG4262 290 ARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALN-QGSFSDPRVTVVNDDAFQWLRTAADMFDV 368 (508)
T ss_pred cceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhc-cCCccCCeeEEEeccHHHHHHhhcccccE
Confidence 468999999999999999988 347999999999999998554321111 0011223457788887765 568999
Q ss_pred EEEcccccccCcch--------HHHHHHHHHhccCCeEEEEE
Q 020710 223 VVCLDVLIHYPQSK--------ADGMIAHLASLAEKRLILSF 256 (322)
Q Consensus 223 V~~~~~l~~~~~~~--------~~~~l~~l~~~~~~~~il~~ 256 (322)
|+. .++||. -.++...+++.++.+|++..
T Consensus 369 vIV-----Dl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~Vv 405 (508)
T COG4262 369 VIV-----DLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVV 405 (508)
T ss_pred EEE-----eCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEE
Confidence 994 566543 13556666665555554443
|
|
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00048 Score=62.41 Aligned_cols=67 Identities=22% Similarity=0.298 Sum_probs=48.3
Q ss_pred CCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC---CCCccEE
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL---DGKYDTV 223 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~fD~V 223 (322)
.++.++|||||++|.++..+.++|.+|++||..+ |- ..+... .+ +.....|.... .+.+|.|
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~-l~----~~L~~~---~~-------V~h~~~d~fr~~p~~~~vDwv 274 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRRGMFVTAVDNGP-MA----QSLMDT---GQ-------VEHLRADGFKFRPPRKNVDWL 274 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHcCCEEEEEechh-cC----HhhhCC---CC-------EEEEeccCcccCCCCCCCCEE
Confidence 4788999999999999999999999999999654 21 111111 11 25666665432 5679999
Q ss_pred EEccc
Q 020710 224 VCLDV 228 (322)
Q Consensus 224 ~~~~~ 228 (322)
+|-.+
T Consensus 275 VcDmv 279 (357)
T PRK11760 275 VCDMV 279 (357)
T ss_pred EEecc
Confidence 98765
|
|
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00041 Score=62.40 Aligned_cols=87 Identities=14% Similarity=0.078 Sum_probs=68.5
Q ss_pred hhHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCce
Q 020710 131 SKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKF 208 (322)
Q Consensus 131 ~~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~ 208 (322)
..+++.+++.+... ++..++|.-||.|..+..+++. ..+|+|+|.++.+++.+++++.... .++ .+
T Consensus 6 pVll~Evl~~L~~~---~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~--~R~-------~~ 73 (305)
T TIGR00006 6 SVLLDEVVEGLNIK---PDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFE--GRV-------VL 73 (305)
T ss_pred chhHHHHHHhcCcC---CCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcC--CcE-------EE
Confidence 34668888888754 5789999999999999999986 4789999999999999999886542 223 77
Q ss_pred EEcccccC--------CCCccEEEEcccc
Q 020710 209 EVKDLESL--------DGKYDTVVCLDVL 229 (322)
Q Consensus 209 ~~~d~~~~--------~~~fD~V~~~~~l 229 (322)
+.+++.++ .+++|.|++.-.+
T Consensus 74 i~~nF~~l~~~l~~~~~~~vDgIl~DLGv 102 (305)
T TIGR00006 74 IHDNFANFFEHLDELLVTKIDGILVDLGV 102 (305)
T ss_pred EeCCHHHHHHHHHhcCCCcccEEEEeccC
Confidence 88877664 2568999986554
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0036 Score=57.98 Aligned_cols=108 Identities=22% Similarity=0.263 Sum_probs=77.8
Q ss_pred CCCCeEEEECCCcccchHHHHhc----CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-----C
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQ----GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-----D 217 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~----~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-----~ 217 (322)
.++.+|||..++.|.=+.++++. |..|+++|+|+.-++..++++...+..+ +.....|.... .
T Consensus 155 ~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~n--------v~~~~~d~~~~~~~~~~ 226 (355)
T COG0144 155 KPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRN--------VIVVNKDARRLAELLPG 226 (355)
T ss_pred CCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCc--------eEEEecccccccccccc
Confidence 57899999999999999998887 4568999999999999999999988865 25666665432 2
Q ss_pred -CCccEEEE------cccccccCcc------h--------HHHHHHHHHhccCCeEEEEECCChhh
Q 020710 218 -GKYDTVVC------LDVLIHYPQS------K--------ADGMIAHLASLAEKRLILSFAPKTFY 262 (322)
Q Consensus 218 -~~fD~V~~------~~~l~~~~~~------~--------~~~~l~~l~~~~~~~~il~~~~~~~~ 262 (322)
++||.|++ ..++.--|+- . -.++|....+++++||++.+...+..
T Consensus 227 ~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~ 292 (355)
T COG0144 227 GEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLT 292 (355)
T ss_pred cCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCc
Confidence 35999996 2333222321 0 13466666667788888877665544
|
|
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.47 E-value=8.7e-05 Score=64.93 Aligned_cols=100 Identities=16% Similarity=0.289 Sum_probs=71.2
Q ss_pred HHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccc
Q 020710 135 ENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLE 214 (322)
Q Consensus 135 ~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 214 (322)
.++.+++... ..+..++|+|||.|-....- -.+.++|.|++...+..+++.-.. .....|+.
T Consensus 34 p~v~qfl~~~--~~gsv~~d~gCGngky~~~~--p~~~~ig~D~c~~l~~~ak~~~~~--------------~~~~ad~l 95 (293)
T KOG1331|consen 34 PMVRQFLDSQ--PTGSVGLDVGCGNGKYLGVN--PLCLIIGCDLCTGLLGGAKRSGGD--------------NVCRADAL 95 (293)
T ss_pred HHHHHHHhcc--CCcceeeecccCCcccCcCC--CcceeeecchhhhhccccccCCCc--------------eeehhhhh
Confidence 3445555544 24778999999999864321 256799999999888877654321 35566665
Q ss_pred cC---CCCccEEEEcccccccCcch-HHHHHHHHHhccCCeE
Q 020710 215 SL---DGKYDTVVCLDVLIHYPQSK-ADGMIAHLASLAEKRL 252 (322)
Q Consensus 215 ~~---~~~fD~V~~~~~l~~~~~~~-~~~~l~~l~~~~~~~~ 252 (322)
.+ +.+||.++...++||+.... ...+++++.+.+++|+
T Consensus 96 ~~p~~~~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg 137 (293)
T KOG1331|consen 96 KLPFREESFDAALSIAVIHHLSTRERRERALEELLRVLRPGG 137 (293)
T ss_pred cCCCCCCccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCC
Confidence 54 78999999999999998544 4678898888765444
|
|
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00038 Score=68.09 Aligned_cols=75 Identities=21% Similarity=0.202 Sum_probs=52.9
Q ss_pred CCCeEEEECCCcccchHHHHhcC----------CEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccc---
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQG----------AIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLE--- 214 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~~----------~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~--- 214 (322)
...+|||.|||+|.++..+++.. .+++|+|+++.++..++.++...+... +.....|..
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~--------~~i~~~d~l~~~ 102 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLE--------INVINFNSLSYV 102 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCC--------ceeeeccccccc
Confidence 35689999999999998887641 468999999999999998876654110 023333311
Q ss_pred -----cCCCCccEEEEccccc
Q 020710 215 -----SLDGKYDTVVCLDVLI 230 (322)
Q Consensus 215 -----~~~~~fD~V~~~~~l~ 230 (322)
+..+.||+|+++--..
T Consensus 103 ~~~~~~~~~~fD~IIgNPPy~ 123 (524)
T TIGR02987 103 LLNIESYLDLFDIVITNPPYG 123 (524)
T ss_pred ccccccccCcccEEEeCCCcc
Confidence 1136899999986544
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00025 Score=58.23 Aligned_cols=71 Identities=21% Similarity=0.171 Sum_probs=58.5
Q ss_pred CCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccCC-CCccEEEEcc
Q 020710 149 GIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESLD-GKYDTVVCLD 227 (322)
Q Consensus 149 ~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~fD~V~~~~ 227 (322)
...+.|+|.|+|.++...++...+|++++.+|...+.|++++.-.+.. +++.+.+|+.+.+ ...|+|+|-+
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk~a~~a~eN~~v~g~~--------n~evv~gDA~~y~fe~ADvvicEm 104 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAHAAERVIAIEKDPKRARLAEENLHVPGDV--------NWEVVVGDARDYDFENADVVICEM 104 (252)
T ss_pred hhceeeccCCcchHHHHHHhhhceEEEEecCcHHHHHhhhcCCCCCCc--------ceEEEecccccccccccceeHHHH
Confidence 468999999999999988888778999999999999999887544443 2488999998764 4789999843
|
|
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.002 Score=54.79 Aligned_cols=111 Identities=14% Similarity=0.041 Sum_probs=67.7
Q ss_pred chhHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc---CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCC
Q 020710 130 HSKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ---GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMP 206 (322)
Q Consensus 130 ~~~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~ 206 (322)
++++...++.-+......++.+||-+|..+|....+++.- ...|++|++|+...+..-..+++.. |+
T Consensus 55 RSKLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~----------NI 124 (229)
T PF01269_consen 55 RSKLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRP----------NI 124 (229)
T ss_dssp T-HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHST----------TE
T ss_pred hhHHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCC----------ce
Confidence 4455566655555444567899999999999999998876 3479999999977665554443321 22
Q ss_pred ceEEcccccC------CCCccEEEEcccccccCc-chHHHHHHHHHhccCCeEEEE
Q 020710 207 KFEVKDLESL------DGKYDTVVCLDVLIHYPQ-SKADGMIAHLASLAEKRLILS 255 (322)
Q Consensus 207 ~~~~~d~~~~------~~~fD~V~~~~~l~~~~~-~~~~~~l~~l~~~~~~~~il~ 255 (322)
--+..|+..+ -+..|+|++- +.. ++.+-++.+....++.+|.+.
T Consensus 125 iPIl~DAr~P~~Y~~lv~~VDvI~~D-----VaQp~Qa~I~~~Na~~fLk~gG~~~ 175 (229)
T PF01269_consen 125 IPILEDARHPEKYRMLVEMVDVIFQD-----VAQPDQARIAALNARHFLKPGGHLI 175 (229)
T ss_dssp EEEES-TTSGGGGTTTS--EEEEEEE------SSTTHHHHHHHHHHHHEEEEEEEE
T ss_pred eeeeccCCChHHhhcccccccEEEec-----CCChHHHHHHHHHHHhhccCCcEEE
Confidence 5677888665 4689999963 332 334556666666666655443
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0011 Score=55.62 Aligned_cols=110 Identities=14% Similarity=0.112 Sum_probs=78.2
Q ss_pred HHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc-CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEccc
Q 020710 135 ENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ-GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDL 213 (322)
Q Consensus 135 ~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~ 213 (322)
....+.+.. ++.+||+||-|.|.....+.+. -.+-+.|+..|..++..+...-... .++....+-.
T Consensus 92 ha~A~ai~t----kggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek---------~nViil~g~W 158 (271)
T KOG1709|consen 92 HALAEAIST----KGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREK---------ENVIILEGRW 158 (271)
T ss_pred HHHHHHHhh----CCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccc---------cceEEEecch
Confidence 444444443 5899999999999999888887 3457789999999988776542211 1124444443
Q ss_pred ccC-----CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEECCC
Q 020710 214 ESL-----DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPK 259 (322)
Q Consensus 214 ~~~-----~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~ 259 (322)
++. ++.||-|+--..-+|..+ +..+.+++.+++++++++++...
T Consensus 159 eDvl~~L~d~~FDGI~yDTy~e~yEd--l~~~hqh~~rLLkP~gv~SyfNg 207 (271)
T KOG1709|consen 159 EDVLNTLPDKHFDGIYYDTYSELYED--LRHFHQHVVRLLKPEGVFSYFNG 207 (271)
T ss_pred HhhhccccccCcceeEeechhhHHHH--HHHHHHHHhhhcCCCceEEEecC
Confidence 332 788999986554466656 77889999999999999987543
|
|
| >TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0062 Score=53.93 Aligned_cols=150 Identities=19% Similarity=0.157 Sum_probs=89.0
Q ss_pred CCeEEEECCCcccchHHHHhc-CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC------C----
Q 020710 149 GIAVCDAGCGTGSLAIPLAKQ-GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL------D---- 217 (322)
Q Consensus 149 ~~~VLDvGcG~G~~~~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~------~---- 217 (322)
...|+.+|||.-.-...+... +.+++=+|. |++++.-++.+.+.+... ..+..++..|+.+. .
T Consensus 82 ~~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~-P~v~~~K~~~l~~~~~~~-----~~~~~~v~~Dl~~~w~~~L~~~gfd 155 (260)
T TIGR00027 82 IRQVVILGAGLDTRAYRLPWPDGTRVFEVDQ-PAVLAFKEKVLAELGAEP-----PAHRRAVPVDLRQDWPAALAAAGFD 155 (260)
T ss_pred CcEEEEeCCccccHHHhcCCCCCCeEEECCC-hHHHHHHHHHHHHcCCCC-----CCceEEeccCchhhHHHHHHhCCCC
Confidence 446999999987776666433 456666665 567766666666543211 11226777776521 1
Q ss_pred -CCccEEEEcccccccCcchHHHHHHHHHhccCCeE--EEEECCC--h-hhHHHHHHhhccCCCCCCccccccCCHHHHH
Q 020710 218 -GKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRL--ILSFAPK--T-FYYDLLKRVGELFPGPSKATRAYLHAEADVE 291 (322)
Q Consensus 218 -~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~--il~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (322)
+.--++++-.++.+++.+....+++.+.+...+|. ++..... . ......+...+...+.......+..++++++
T Consensus 156 ~~~ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (260)
T TIGR00027 156 PTAPTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYVRPLDGEWRAGMRAPVYHAARGVDGSGLVFGIDRADVA 235 (260)
T ss_pred CCCCeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEeccccchhHHHHHHHHHHHhhhcccccccccCCChhhHH
Confidence 23347777788899999889999999988763443 3333322 1 0000111111111111122233445789999
Q ss_pred HHHHHCCCEEEEE
Q 020710 292 RALQKVGWKIRKR 304 (322)
Q Consensus 292 ~~l~~aGf~vv~~ 304 (322)
++|.+.||++...
T Consensus 236 ~~l~~~Gw~~~~~ 248 (260)
T TIGR00027 236 EWLAERGWRASEH 248 (260)
T ss_pred HHHHHCCCeeecC
Confidence 9999999999765
|
This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants. |
| >PHA01634 hypothetical protein | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0019 Score=49.72 Aligned_cols=48 Identities=15% Similarity=0.053 Sum_probs=42.3
Q ss_pred CCCeEEEECCCcccchHHHHhcCCE-EEEEeCCHHHHHHHHHHhHHhhh
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQGAI-VSASDISAAMVAEARKKAEEELL 195 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~~~~-v~gvD~s~~~l~~a~~~~~~~~~ 195 (322)
.+.+|+|||.+.|..+++++-+|++ |+++++++...+..++......+
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~nnI 76 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYFNI 76 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhhee
Confidence 4889999999999999999999885 99999999999999887765433
|
|
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.00045 Score=55.39 Aligned_cols=105 Identities=16% Similarity=0.221 Sum_probs=63.6
Q ss_pred CCCeEEEECCCc-ccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEccccc----C-CCC
Q 020710 148 KGIAVCDAGCGT-GSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLES----L-DGK 219 (322)
Q Consensus 148 ~~~~VLDvGcG~-G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~----~-~~~ 219 (322)
.+.+|||+|.|- |..+..++.. ...|.-.|-++..++..++....+.... ...+.....+... . ...
T Consensus 29 rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~-----~tsc~vlrw~~~~aqsq~eq~t 103 (201)
T KOG3201|consen 29 RGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASS-----LTSCCVLRWLIWGAQSQQEQHT 103 (201)
T ss_pred hHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccc-----cceehhhHHHHhhhHHHHhhCc
Confidence 467899999994 4445555544 4579999999999887776554331110 0111122222111 1 468
Q ss_pred ccEEEEcccccccCcchHHHHHHHHHhccCCeE-EEEECCC
Q 020710 220 YDTVVCLDVLIHYPQSKADGMIAHLASLAEKRL-ILSFAPK 259 (322)
Q Consensus 220 fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~-il~~~~~ 259 (322)
||.|+|.+++- +. +....+.+.+++++++.+ -+.+.|.
T Consensus 104 FDiIlaADClF-fd-E~h~sLvdtIk~lL~p~g~Al~fsPR 142 (201)
T KOG3201|consen 104 FDIILAADCLF-FD-EHHESLVDTIKSLLRPSGRALLFSPR 142 (201)
T ss_pred ccEEEeccchh-HH-HHHHHHHHHHHHHhCcccceeEecCc
Confidence 99999999873 32 234678888888764433 5555553
|
|
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0072 Score=50.47 Aligned_cols=108 Identities=18% Similarity=0.104 Sum_probs=75.8
Q ss_pred chhHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc-C-CEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCc
Q 020710 130 HSKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ-G-AIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPK 207 (322)
Q Consensus 130 ~~~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~-~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~ 207 (322)
.+++...++.-+...+..++.+||=+|..+|....+++.- + ..+++|++|+.+....-..+.+.. ++-
T Consensus 58 RSKLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~----------Ni~ 127 (231)
T COG1889 58 RSKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRP----------NII 127 (231)
T ss_pred hhHHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCC----------Cce
Confidence 4566677777777665678999999999999999999887 3 469999999988877665555432 235
Q ss_pred eEEcccccC------CCCccEEEEcccccccCcch-HHHHHHHHHhccCCeE
Q 020710 208 FEVKDLESL------DGKYDTVVCLDVLIHYPQSK-ADGMIAHLASLAEKRL 252 (322)
Q Consensus 208 ~~~~d~~~~------~~~fD~V~~~~~l~~~~~~~-~~~~l~~l~~~~~~~~ 252 (322)
-+..|+..+ -+..|+|++ .+.++. .+-+..+....++.+|
T Consensus 128 PIL~DA~~P~~Y~~~Ve~VDviy~-----DVAQp~Qa~I~~~Na~~FLk~~G 174 (231)
T COG1889 128 PILEDARKPEKYRHLVEKVDVIYQ-----DVAQPNQAEILADNAEFFLKKGG 174 (231)
T ss_pred eeecccCCcHHhhhhcccccEEEE-----ecCCchHHHHHHHHHHHhcccCC
Confidence 677888765 467999985 554433 3344555555554444
|
|
| >KOG4058 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0062 Score=48.18 Aligned_cols=87 Identities=26% Similarity=0.374 Sum_probs=65.1
Q ss_pred hHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcC-CEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEE
Q 020710 132 KTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQG-AIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEV 210 (322)
Q Consensus 132 ~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~ 210 (322)
+.++.+++++... +.++.+|+|+|.|+.-...++.| ...+|+++++=.+..++-+.-..+...+. .|..
T Consensus 59 eQv~nVLSll~~n---~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~t-------rf~R 128 (199)
T KOG4058|consen 59 EQVENVLSLLRGN---PKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKST-------RFRR 128 (199)
T ss_pred HHHHHHHHHccCC---CCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccch-------hhhh
Confidence 3456777777765 56899999999999999888888 45899999999999998877776665544 7888
Q ss_pred cccccCC-CCccEEEEccc
Q 020710 211 KDLESLD-GKYDTVVCLDV 228 (322)
Q Consensus 211 ~d~~~~~-~~fD~V~~~~~ 228 (322)
-|+-..+ ..|..|+...+
T Consensus 129 kdlwK~dl~dy~~vviFga 147 (199)
T KOG4058|consen 129 KDLWKVDLRDYRNVVIFGA 147 (199)
T ss_pred hhhhhccccccceEEEeeh
Confidence 8876652 33444544433
|
|
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0031 Score=59.37 Aligned_cols=94 Identities=20% Similarity=0.297 Sum_probs=71.3
Q ss_pred CeEEEECCCcccchHHHHhcCCE-EEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC---CCCccEEEE
Q 020710 150 IAVCDAGCGTGSLAIPLAKQGAI-VSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL---DGKYDTVVC 225 (322)
Q Consensus 150 ~~VLDvGcG~G~~~~~la~~~~~-v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~fD~V~~ 225 (322)
.++|-+|||.-.+...+.+.|.+ ++.+|+|+..++....+....... ..+...|+..+ +.+||+|+.
T Consensus 50 ~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~~~~---------~~~~~~d~~~l~fedESFdiVId 120 (482)
T KOG2352|consen 50 FKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKERPE---------MQMVEMDMDQLVFEDESFDIVID 120 (482)
T ss_pred ceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccCCcc---------eEEEEecchhccCCCcceeEEEe
Confidence 38999999999999988888875 999999999998887766432222 27888888776 899999999
Q ss_pred cccccccCcch--------HHHHHHHHHhccCCeE
Q 020710 226 LDVLIHYPQSK--------ADGMIAHLASLAEKRL 252 (322)
Q Consensus 226 ~~~l~~~~~~~--------~~~~l~~l~~~~~~~~ 252 (322)
...++++-.++ +...+.++.+++..++
T Consensus 121 kGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~g 155 (482)
T KOG2352|consen 121 KGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGG 155 (482)
T ss_pred cCccccccCCchhhhhhHHhhHHHhhHHHHhccCC
Confidence 99998865322 2345667777654433
|
|
| >cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.012 Score=52.70 Aligned_cols=126 Identities=14% Similarity=0.132 Sum_probs=77.6
Q ss_pred eEEEECCCcccchHHHHhcCCE-EEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-----CCCccEEE
Q 020710 151 AVCDAGCGTGSLAIPLAKQGAI-VSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-----DGKYDTVV 224 (322)
Q Consensus 151 ~VLDvGcG~G~~~~~la~~~~~-v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-----~~~fD~V~ 224 (322)
+|+|+.||.|.+...+...|.+ +.++|+++.+++..+.++.. ....+|+.+. .+.+|+|+
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~--------------~~~~~Di~~~~~~~~~~~~D~l~ 67 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPN--------------KLIEGDITKIDEKDFIPDIDLLT 67 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCC--------------CCccCccccCchhhcCCCCCEEE
Confidence 6999999999999999888887 78899999999988877643 2344555443 35799999
Q ss_pred EcccccccCc--------chHHHHHHHHHhc---cCCeEEEEECCChhhHHHHHHhhccCCCCCCccccccCCHHHHHHH
Q 020710 225 CLDVLIHYPQ--------SKADGMIAHLASL---AEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADVERA 293 (322)
Q Consensus 225 ~~~~l~~~~~--------~~~~~~l~~l~~~---~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (322)
...-...+.. +....++.+..++ .++..++.-+-..+.. ..+ ....+.+.+.
T Consensus 68 ~gpPCq~fS~ag~~~~~~d~r~~L~~~~~~~i~~~~P~~~v~ENV~g~~~---------------~~~--~~~~~~i~~~ 130 (275)
T cd00315 68 GGFPCQPFSIAGKRKGFEDTRGTLFFEIIRILKEKKPKYFLLENVKGLLT---------------HDN--GNTLKVILNT 130 (275)
T ss_pred eCCCChhhhHHhhcCCCCCchHHHHHHHHHHHHhcCCCEEEEEcCcchhc---------------cCc--hHHHHHHHHH
Confidence 8765443331 1122233333332 3455544432222110 000 0124678888
Q ss_pred HHHCCCEEEEEeee
Q 020710 294 LQKVGWKIRKRGLI 307 (322)
Q Consensus 294 l~~aGf~vv~~~~~ 307 (322)
|++.||.+....+.
T Consensus 131 l~~~GY~~~~~~l~ 144 (275)
T cd00315 131 LEELGYNVYWKLLN 144 (275)
T ss_pred HHhCCcEEEEEEEE
Confidence 89999987654443
|
Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. |
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0071 Score=54.27 Aligned_cols=108 Identities=18% Similarity=0.193 Sum_probs=77.6
Q ss_pred CCCCeEEEECCCcccchHHHHhc---CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-----CC
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQ---GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-----DG 218 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-----~~ 218 (322)
.++.+|||..++.|.=+..+++. ...+++.|+++.-++..++++...+..+ +.....|.... ..
T Consensus 84 ~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~--------v~~~~~D~~~~~~~~~~~ 155 (283)
T PF01189_consen 84 QPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFN--------VIVINADARKLDPKKPES 155 (283)
T ss_dssp TTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SS--------EEEEESHHHHHHHHHHTT
T ss_pred cccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCce--------EEEEeecccccccccccc
Confidence 46889999999999999999887 3589999999999999999999888764 24444666544 34
Q ss_pred CccEEEE----c--ccccccCcc-------h-------HHHHHHHHHhcc----CCeEEEEECCChhh
Q 020710 219 KYDTVVC----L--DVLIHYPQS-------K-------ADGMIAHLASLA----EKRLILSFAPKTFY 262 (322)
Q Consensus 219 ~fD~V~~----~--~~l~~~~~~-------~-------~~~~l~~l~~~~----~~~~il~~~~~~~~ 262 (322)
.||.|+. + .++..-|+- . -.++|+...+.+ ++||.+.+...++.
T Consensus 156 ~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~ 223 (283)
T PF01189_consen 156 KFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLS 223 (283)
T ss_dssp TEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHH
T ss_pred ccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHH
Confidence 6999996 2 233333321 0 135677777778 88888877666543
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.012 Score=49.78 Aligned_cols=74 Identities=20% Similarity=0.163 Sum_probs=52.2
Q ss_pred HHHHHHhhhcC-CCCCCeEEEECCCcccchHHHHhc-C--CEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEE
Q 020710 135 ENTMQMLNDEG-SLKGIAVCDAGCGTGSLAIPLAKQ-G--AIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEV 210 (322)
Q Consensus 135 ~~~~~~l~~~~-~~~~~~VLDvGcG~G~~~~~la~~-~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~ 210 (322)
-+++++..+.. ..++..|+|+|+-.|.++..+++. + ..|+|+|+.|-- .+..+.+++
T Consensus 31 ~KL~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~-------------------~~~~V~~iq 91 (205)
T COG0293 31 YKLLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK-------------------PIPGVIFLQ 91 (205)
T ss_pred HHHHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc-------------------cCCCceEEe
Confidence 45555555443 346789999999999999999988 3 349999997631 112248999
Q ss_pred cccccC-----------CCCccEEEEcc
Q 020710 211 KDLESL-----------DGKYDTVVCLD 227 (322)
Q Consensus 211 ~d~~~~-----------~~~fD~V~~~~ 227 (322)
+|+... ...+|+|++-+
T Consensus 92 ~d~~~~~~~~~l~~~l~~~~~DvV~sD~ 119 (205)
T COG0293 92 GDITDEDTLEKLLEALGGAPVDVVLSDM 119 (205)
T ss_pred eeccCccHHHHHHHHcCCCCcceEEecC
Confidence 998764 34479999743
|
|
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.00053 Score=51.82 Aligned_cols=93 Identities=16% Similarity=0.108 Sum_probs=36.6
Q ss_pred EEECCCcccchHHHHhc---C--CEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-----CCCccE
Q 020710 153 CDAGCGTGSLAIPLAKQ---G--AIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-----DGKYDT 222 (322)
Q Consensus 153 LDvGcG~G~~~~~la~~---~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-----~~~fD~ 222 (322)
||||+..|..+..+++. . .+++++|..+. .+..++..++.+...++ +++.+|..+. .++||+
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~-------~~~~g~s~~~l~~~~~~~~dl 72 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRV-------EFIQGDSPDFLPSLPDGPIDL 72 (106)
T ss_dssp --------------------------EEEESS-------------GGG-BTE-------EEEES-THHHHHHHHH--EEE
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeE-------EEEEcCcHHHHHHcCCCCEEE
Confidence 69999999999888764 2 37999999985 33334444444444433 8899987654 489999
Q ss_pred EEEcccccccCcchHHHHHHHHHhccCCeEEEEE
Q 020710 223 VVCLDVLIHYPQSKADGMIAHLASLAEKRLILSF 256 (322)
Q Consensus 223 V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~ 256 (322)
|+.-.. |-. +.....++.+...+.+++++.+
T Consensus 73 i~iDg~--H~~-~~~~~dl~~~~~~l~~ggviv~ 103 (106)
T PF13578_consen 73 IFIDGD--HSY-EAVLRDLENALPRLAPGGVIVF 103 (106)
T ss_dssp EEEES-----H-HHHHHHHHHHGGGEEEEEEEEE
T ss_pred EEECCC--CCH-HHHHHHHHHHHHHcCCCeEEEE
Confidence 997542 221 2245667777776777777765
|
|
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.1 Score=45.18 Aligned_cols=138 Identities=19% Similarity=0.149 Sum_probs=75.5
Q ss_pred HHHHHhhhcCCCCCCeEEEECCCcccchHHHH--hcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEccc
Q 020710 136 NTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLA--KQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDL 213 (322)
Q Consensus 136 ~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la--~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~ 213 (322)
+...++...+...+++||=||-.--. +..++ ....+|+.+|+++.+++..++.+.+.++.. +.+..|+
T Consensus 32 ~Ra~~~~~~gdL~gk~il~lGDDDLt-SlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~i---------~~~~~Dl 101 (243)
T PF01861_consen 32 RRAALMAERGDLEGKRILFLGDDDLT-SLALALTGLPKRITVVDIDERLLDFINRVAEEEGLPI---------EAVHYDL 101 (243)
T ss_dssp HHHHHHHHTT-STT-EEEEES-TT-H-HHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--E---------EEE---T
T ss_pred HHHHHHHhcCcccCCEEEEEcCCcHH-HHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCce---------EEEEecc
Confidence 34455555555678999999955433 33333 236789999999999999999999988765 8888898
Q ss_pred ccC-----CCCccEEEEcccccccCcchHHHHHHHHHhcc-CC--eEEEEECCChhhHHHHHHhhccCCCCCCccccccC
Q 020710 214 ESL-----DGKYDTVVCLDVLIHYPQSKADGMIAHLASLA-EK--RLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLH 285 (322)
Q Consensus 214 ~~~-----~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~-~~--~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (322)
.+. .++||++++--.. ..+.+.-++.+-...+ +. .+++.+.+......
T Consensus 102 R~~LP~~~~~~fD~f~TDPPy---T~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~~~s~~--------------------- 157 (243)
T PF01861_consen 102 RDPLPEELRGKFDVFFTDPPY---TPEGLKLFLSRGIEALKGEGCAGYFGFTHKEASPD--------------------- 157 (243)
T ss_dssp TS---TTTSS-BSEEEE---S---SHHHHHHHHHHHHHTB-STT-EEEEEE-TTT--HH---------------------
T ss_pred cccCCHHHhcCCCEEEeCCCC---CHHHHHHHHHHHHHHhCCCCceEEEEEecCcCcHH---------------------
Confidence 664 5899999974321 1133556676666644 23 34555654331100
Q ss_pred CHHHHHHHHHHCCCEEEEEeee
Q 020710 286 AEADVERALQKVGWKIRKRGLI 307 (322)
Q Consensus 286 ~~~~~~~~l~~aGf~vv~~~~~ 307 (322)
.-.++++.+.+.||-+...-..
T Consensus 158 ~~~~~Q~~l~~~gl~i~dii~~ 179 (243)
T PF01861_consen 158 KWLEVQRFLLEMGLVITDIIPD 179 (243)
T ss_dssp HHHHHHHHHHTS--EEEEEEEE
T ss_pred HHHHHHHHHHHCCcCHHHHHhh
Confidence 0126778888889887765433
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >COG3129 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.0086 Score=51.02 Aligned_cols=97 Identities=18% Similarity=0.291 Sum_probs=63.0
Q ss_pred cCchhHHHHHHHHhhhcC---CCCCCeEEEECCCcccch--HHHHhcCCEEEEEeCCHHHHHHHHHHhHHh-hhccCCCC
Q 020710 128 LGHSKTVENTMQMLNDEG---SLKGIAVCDAGCGTGSLA--IPLAKQGAIVSASDISAAMVAEARKKAEEE-LLADNGGE 201 (322)
Q Consensus 128 ~~~~~~~~~~~~~l~~~~---~~~~~~VLDvGcG~G~~~--~~la~~~~~v~gvD~s~~~l~~a~~~~~~~-~~~~~~~~ 201 (322)
++....+..+.++|.... .+++.++||||.|.--.= .-..+.|++.+|.|+++..++.|+.....+ ++...+
T Consensus 55 PgRAdYih~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I-- 132 (292)
T COG3129 55 PGRADYIHHLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAI-- 132 (292)
T ss_pred CChhHHHHHHHHHHHhcCCCCCcCceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhhe--
Confidence 344556677777776542 245678999987754321 112244899999999999999999888765 333322
Q ss_pred CCCCCceEEc-c-------cccCCCCccEEEEcccccc
Q 020710 202 APVMPKFEVK-D-------LESLDGKYDTVVCLDVLIH 231 (322)
Q Consensus 202 ~~~~~~~~~~-d-------~~~~~~~fD~V~~~~~l~~ 231 (322)
+.+.. | +...++.||.++|+--+|.
T Consensus 133 -----~lr~qk~~~~if~giig~nE~yd~tlCNPPFh~ 165 (292)
T COG3129 133 -----RLRRQKDSDAIFNGIIGKNERYDATLCNPPFHD 165 (292)
T ss_pred -----eEEeccCccccccccccccceeeeEecCCCcch
Confidence 33222 1 1112688999999988754
|
|
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.0094 Score=53.54 Aligned_cols=58 Identities=10% Similarity=0.079 Sum_probs=48.5
Q ss_pred hhHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHH
Q 020710 131 SKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEE 192 (322)
Q Consensus 131 ~~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~ 192 (322)
..++++++.... .++..|||.-||+|..+....+.|.+++|+|++++-++.|++++..
T Consensus 195 ~~L~erlI~~~S----~~GD~VLDPF~GSGTT~~AA~~lgR~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 195 EALLKRIILASS----NPGDIVLDPFAGSFTTGAVAKASGRKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred HHHHHHHHHHhC----CCCCEEEECCCCCcHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHh
Confidence 345555555544 3589999999999999999888899999999999999999999753
|
|
| >PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.0033 Score=54.22 Aligned_cols=82 Identities=22% Similarity=0.155 Sum_probs=44.6
Q ss_pred CeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCC-CCCCCCCceEEcccccC----CCCccEEE
Q 020710 150 IAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNG-GEAPVMPKFEVKDLESL----DGKYDTVV 224 (322)
Q Consensus 150 ~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~-~~~~~~~~~~~~d~~~~----~~~fD~V~ 224 (322)
.+|||.-||.|..+..++..|++|+++|-||-+....+.-+......... .....+++++.+|..+. +.+||+|+
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~~~s~DVVY 156 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASLGCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQPDNSFDVVY 156 (234)
T ss_dssp --EEETT-TTSHHHHHHHHHT--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCHSS--SEEE
T ss_pred CEEEECCCcchHHHHHHHccCCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhcCCCCCEEE
Confidence 48999999999999999988999999999997765555433221110000 00001237888887664 68999999
Q ss_pred Ecccccc
Q 020710 225 CLDVLIH 231 (322)
Q Consensus 225 ~~~~l~~ 231 (322)
+--++.+
T Consensus 157 ~DPMFp~ 163 (234)
T PF04445_consen 157 FDPMFPE 163 (234)
T ss_dssp E--S---
T ss_pred ECCCCCC
Confidence 9777765
|
; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A. |
| >PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.0057 Score=55.09 Aligned_cols=83 Identities=16% Similarity=0.197 Sum_probs=57.5
Q ss_pred hHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceE
Q 020710 132 KTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFE 209 (322)
Q Consensus 132 ~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~ 209 (322)
.++..+++.|... +++.++|.--|.|.++..+++. +++|+|+|.++.+++.+++++... .+++ .++
T Consensus 7 Vll~Evl~~L~~~---~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~--~~r~-------~~~ 74 (310)
T PF01795_consen 7 VLLKEVLEALNPK---PGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF--DDRF-------IFI 74 (310)
T ss_dssp TTHHHHHHHHT-----TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC--CTTE-------EEE
T ss_pred ccHHHHHHhhCcC---CCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc--cceE-------EEE
Confidence 4678888888854 6789999999999999999987 689999999999999998877643 2222 666
Q ss_pred EcccccC---------CCCccEEEEc
Q 020710 210 VKDLESL---------DGKYDTVVCL 226 (322)
Q Consensus 210 ~~d~~~~---------~~~fD~V~~~ 226 (322)
..++.++ .+.+|.|+.-
T Consensus 75 ~~~F~~l~~~l~~~~~~~~~dgiL~D 100 (310)
T PF01795_consen 75 HGNFSNLDEYLKELNGINKVDGILFD 100 (310)
T ss_dssp ES-GGGHHHHHHHTTTTS-EEEEEEE
T ss_pred eccHHHHHHHHHHccCCCccCEEEEc
Confidence 6666554 1356666653
|
The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A. |
| >COG4627 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.0018 Score=51.61 Aligned_cols=84 Identities=17% Similarity=0.215 Sum_probs=55.2
Q ss_pred CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEEC-CChhhHHHH----HHhhccCCCCCCccccccCCHHHHH
Q 020710 217 DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFA-PKTFYYDLL----KRVGELFPGPSKATRAYLHAEADVE 291 (322)
Q Consensus 217 ~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (322)
+++.|+|++..+++|+.-++...+++++++.++++|++.+. |+..+.++. -..+..++..+ ..+...++.+.+.
T Consensus 45 dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl~f~~~~Y~~~vqvggpgpndh-P~~r~v~t~r~m~ 123 (185)
T COG4627 45 DNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDLKFLDWLYQHDVQVGGPGPNDH-PLHRIVKTMRMMF 123 (185)
T ss_pred CcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCcchhHHHHhhhhhccCCCCCCC-cHHHHHHHHHHHH
Confidence 78999999999999999888889999999999999988775 332222221 11222222111 1222233566677
Q ss_pred HHHHHCCCEE
Q 020710 292 RALQKVGWKI 301 (322)
Q Consensus 292 ~~l~~aGf~v 301 (322)
+.+.++||.+
T Consensus 124 n~~m~~~~~~ 133 (185)
T COG4627 124 NGFMDAGFVV 133 (185)
T ss_pred HHHHhhhhee
Confidence 7777777765
|
|
| >COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.019 Score=51.07 Aligned_cols=87 Identities=14% Similarity=0.097 Sum_probs=68.5
Q ss_pred hhHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcC---CEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCc
Q 020710 131 SKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQG---AIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPK 207 (322)
Q Consensus 131 ~~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~---~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~ 207 (322)
..++.++++.|... +++..+|.--|.|..+..++++. .+++|+|-++.+++.|++++...+. ++ .
T Consensus 9 pVLl~E~i~~L~~~---~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~--r~-------~ 76 (314)
T COG0275 9 PVLLNEVVELLAPK---PDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDG--RV-------T 76 (314)
T ss_pred chHHHHHHHhcccC---CCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCC--cE-------E
Confidence 34678888888876 67899999999999999999883 5799999999999999999876542 22 7
Q ss_pred eEEcccccC--------CCCccEEEEcccc
Q 020710 208 FEVKDLESL--------DGKYDTVVCLDVL 229 (322)
Q Consensus 208 ~~~~d~~~~--------~~~fD~V~~~~~l 229 (322)
++..++.++ .+++|-|+.--.+
T Consensus 77 ~v~~~F~~l~~~l~~~~i~~vDGiL~DLGV 106 (314)
T COG0275 77 LVHGNFANLAEALKELGIGKVDGILLDLGV 106 (314)
T ss_pred EEeCcHHHHHHHHHhcCCCceeEEEEeccC
Confidence 777776554 3578888765443
|
|
| >PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2 | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.07 Score=48.53 Aligned_cols=123 Identities=14% Similarity=0.182 Sum_probs=74.5
Q ss_pred eEEEECCCcccchHHHHhcCCE-EEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-----CCCccEEE
Q 020710 151 AVCDAGCGTGSLAIPLAKQGAI-VSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-----DGKYDTVV 224 (322)
Q Consensus 151 ~VLDvGcG~G~~~~~la~~~~~-v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-----~~~fD~V~ 224 (322)
+++|+-||.|.+...|.+.|.+ +.++|+++.+++.-+.++. ....+|+.+. ++.+|+++
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~---------------~~~~~Di~~~~~~~l~~~~D~l~ 66 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP---------------EVICGDITEIDPSDLPKDVDLLI 66 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT---------------EEEESHGGGCHHHHHHHT-SEEE
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc---------------ccccccccccccccccccceEEE
Confidence 6999999999999999999976 8899999999988888775 2456666655 22699999
Q ss_pred EcccccccC---------cch---HHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCCCCCccccccCCHHHHHH
Q 020710 225 CLDVLIHYP---------QSK---ADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADVER 292 (322)
Q Consensus 225 ~~~~l~~~~---------~~~---~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (322)
...-.+.+. ++. ...+++-+..+ ++..++.-+-..+.. .... ...+.+.+
T Consensus 67 ggpPCQ~fS~ag~~~~~~d~r~~L~~~~~~~v~~~-~Pk~~~~ENV~~l~~---------------~~~~--~~~~~i~~ 128 (335)
T PF00145_consen 67 GGPPCQGFSIAGKRKGFDDPRNSLFFEFLRIVKEL-KPKYFLLENVPGLLS---------------SKNG--EVFKEILE 128 (335)
T ss_dssp EE---TTTSTTSTHHCCCCHTTSHHHHHHHHHHHH-S-SEEEEEEEGGGGT---------------GGGH--HHHHHHHH
T ss_pred eccCCceEeccccccccccccchhhHHHHHHHhhc-cceEEEecccceeec---------------cccc--cccccccc
Confidence 865443333 111 23344444433 455544432111110 0000 12467888
Q ss_pred HHHHCCCEEEEEee
Q 020710 293 ALQKVGWKIRKRGL 306 (322)
Q Consensus 293 ~l~~aGf~vv~~~~ 306 (322)
.|.+.||.+....+
T Consensus 129 ~l~~lGY~v~~~vl 142 (335)
T PF00145_consen 129 ELEELGYNVQWRVL 142 (335)
T ss_dssp HHHHTTEEEEEEEE
T ss_pred cccccceeehhccc
Confidence 99999998765433
|
1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A .... |
| >PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.011 Score=50.80 Aligned_cols=56 Identities=20% Similarity=0.246 Sum_probs=43.4
Q ss_pred CchhHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHH
Q 020710 129 GHSKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARK 188 (322)
Q Consensus 129 ~~~~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~ 188 (322)
....++++++..... ++..|||.-||+|..+....+.|.+.+|+|++++.++.|++
T Consensus 176 kP~~l~~~lI~~~t~----~gdiVlDpF~GSGTT~~aa~~l~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 176 KPVELIERLIKASTN----PGDIVLDPFAGSGTTAVAAEELGRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp S-HHHHHHHHHHHS-----TT-EEEETT-TTTHHHHHHHHTT-EEEEEESSHHHHHHHHH
T ss_pred CCHHHHHHHHHhhhc----cceeeehhhhccChHHHHHHHcCCeEEEEeCCHHHHHHhcC
Confidence 345666777766654 58999999999999999999999999999999999998864
|
In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B .... |
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.019 Score=49.80 Aligned_cols=58 Identities=10% Similarity=0.165 Sum_probs=47.7
Q ss_pred hHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHh
Q 020710 132 KTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEE 193 (322)
Q Consensus 132 ~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~ 193 (322)
.+++.++.... .++..|||.-||+|..+....+.|.+++|+|++++..+.+.+++.+.
T Consensus 151 ~l~~~~i~~~s----~~g~~vlDpf~Gsgtt~~aa~~~~r~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 151 TSLQPLIESFT----HPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred HHHHHHHHHhC----CCCCEEEeCCCCCCHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHH
Confidence 44445544433 35889999999999999998888999999999999999999998654
|
|
| >TIGR00675 dcm DNA-methyltransferase (dcm) | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.046 Score=49.87 Aligned_cols=124 Identities=14% Similarity=0.179 Sum_probs=74.6
Q ss_pred EEEECCCcccchHHHHhcCCE-EEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC----CCCccEEEEc
Q 020710 152 VCDAGCGTGSLAIPLAKQGAI-VSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL----DGKYDTVVCL 226 (322)
Q Consensus 152 VLDvGcG~G~~~~~la~~~~~-v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~~fD~V~~~ 226 (322)
|+|+-||.|.+...|.+.|.+ +.++|+++.+++..+.++.. .+..+|+.++ -..+|+++..
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~~--------------~~~~~Di~~~~~~~~~~~dvl~gg 66 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFGN--------------KVPFGDITKISPSDIPDFDILLGG 66 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCCC--------------CCCccChhhhhhhhCCCcCEEEec
Confidence 689999999999999888988 56799999999888877643 2334565554 2358998876
Q ss_pred ccccccCc--------chHHHHHHHHHhc---cCCeEEEEECCChhhHHHHHHhhccCCCCCCccccccCCHHHHHHHHH
Q 020710 227 DVLIHYPQ--------SKADGMIAHLASL---AEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQ 295 (322)
Q Consensus 227 ~~l~~~~~--------~~~~~~l~~l~~~---~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 295 (322)
.-...++. +....++.+..++ .++..++.-+-..+. .. . .. .....+.+.|+
T Consensus 67 ~PCq~fS~ag~~~~~~d~r~~L~~~~~r~i~~~~P~~~v~ENV~~l~----~~---------~--~~--~~~~~i~~~l~ 129 (315)
T TIGR00675 67 FPCQPFSIAGKRKGFEDTRGTLFFEIVRILKEKKPKFFLLENVKGLV----SH---------D--KG--RTFKVIIETLE 129 (315)
T ss_pred CCCcccchhcccCCCCCchhhHHHHHHHHHhhcCCCEEEeeccHHHH----hc---------c--cc--hHHHHHHHHHH
Confidence 54444331 1122333333332 355555443322211 00 0 00 12357778888
Q ss_pred HCCCEEEEEee
Q 020710 296 KVGWKIRKRGL 306 (322)
Q Consensus 296 ~aGf~vv~~~~ 306 (322)
+.||.+....+
T Consensus 130 ~~GY~v~~~~l 140 (315)
T TIGR00675 130 ELGYKVYYKVL 140 (315)
T ss_pred hCCCEEEEEEE
Confidence 89998865443
|
All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >COG4301 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.73 Score=40.02 Aligned_cols=99 Identities=14% Similarity=0.092 Sum_probs=65.6
Q ss_pred CCeEEEECCCcccchHHHHhc----C--CEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC----C-
Q 020710 149 GIAVCDAGCGTGSLAIPLAKQ----G--AIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL----D- 217 (322)
Q Consensus 149 ~~~VLDvGcG~G~~~~~la~~----~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~----~- 217 (322)
+.+.+|+|+|+-.=++.|... + .+++.+|+|...++..-+.+......-. +.-+++|.+.. +
T Consensus 79 ~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~-------v~~l~~~~~~~La~~~~ 151 (321)
T COG4301 79 ACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLE-------VNALCGDYELALAELPR 151 (321)
T ss_pred cceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCe-------EeehhhhHHHHHhcccC
Confidence 678999999998877777654 3 4799999999988654443332211110 14566675442 2
Q ss_pred -CCccEEEEcccccccCcchHHHHHHHHHhccCCeEEE
Q 020710 218 -GKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLIL 254 (322)
Q Consensus 218 -~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il 254 (322)
+.==.++...+|-.+.+.+...++..++..+.+|=++
T Consensus 152 ~~~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~ 189 (321)
T COG4301 152 GGRRLFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYF 189 (321)
T ss_pred CCeEEEEEecccccCCChHHHHHHHHHHHhcCCCcceE
Confidence 2222344556788888888889999999887665444
|
|
| >PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [] | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.015 Score=43.58 Aligned_cols=44 Identities=25% Similarity=0.268 Sum_probs=33.2
Q ss_pred HHHHHHhhhcC-CCCCCeEEEECCCcccchHHHHhcCCEEEEEeC
Q 020710 135 ENTMQMLNDEG-SLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDI 178 (322)
Q Consensus 135 ~~~~~~l~~~~-~~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~ 178 (322)
..++.+..... ..+.....|+|||+|.+.--|...|..=.|+|.
T Consensus 44 AyLi~LW~~~~~~~~~~~FVDlGCGNGLLV~IL~~EGy~G~GiD~ 88 (112)
T PF07757_consen 44 AYLIELWRDMYGEQKFQGFVDLGCGNGLLVYILNSEGYPGWGIDA 88 (112)
T ss_pred HHHHHHHhcccCCCCCCceEEccCCchHHHHHHHhCCCCcccccc
Confidence 34445544432 234668999999999999999999999999996
|
; GO: 0008168 methyltransferase activity |
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.05 Score=45.60 Aligned_cols=46 Identities=20% Similarity=0.421 Sum_probs=37.9
Q ss_pred CCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhh
Q 020710 149 GIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEEL 194 (322)
Q Consensus 149 ~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~ 194 (322)
...+.|||||.|.++..|+.. ..-+.|.+|--..-+..++++....
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR 108 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALR 108 (249)
T ss_pred cceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHh
Confidence 467999999999999999988 3458999998888888887776543
|
|
| >PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs [] | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.31 Score=45.57 Aligned_cols=112 Identities=23% Similarity=0.299 Sum_probs=68.2
Q ss_pred HHHHHHhhhcCCCCCCeEEEECCCcccc----hHHHHhc--C---CEEEEEeC----CHHHHHHHHHHhHHhhhccCCCC
Q 020710 135 ENTMQMLNDEGSLKGIAVCDAGCGTGSL----AIPLAKQ--G---AIVSASDI----SAAMVAEARKKAEEELLADNGGE 201 (322)
Q Consensus 135 ~~~~~~l~~~~~~~~~~VLDvGcG~G~~----~~~la~~--~---~~v~gvD~----s~~~l~~a~~~~~~~~~~~~~~~ 201 (322)
..+++.+... +..+|+|+|.|.|.- ...|+.+ | .++|||+. +..-++...+++.+..-.-.+
T Consensus 100 qaIleA~~g~---~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv-- 174 (374)
T PF03514_consen 100 QAILEAFEGE---RRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGV-- 174 (374)
T ss_pred HHHHHHhccC---cceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCc--
Confidence 4555666544 577999999999974 4444444 2 47999999 788888888776554322111
Q ss_pred CCCCCceEEc---ccccC--------CCCccEEEEcccccccCcc------hHHHHHHHHHhccCCeEEE
Q 020710 202 APVMPKFEVK---DLESL--------DGKYDTVVCLDVLIHYPQS------KADGMIAHLASLAEKRLIL 254 (322)
Q Consensus 202 ~~~~~~~~~~---d~~~~--------~~~fD~V~~~~~l~~~~~~------~~~~~l~~l~~~~~~~~il 254 (322)
.+ +|... +++++ ++..=+|-|...|||+.++ ....+|+.++++.+..+++
T Consensus 175 ~f---ef~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir~L~P~vvv~ 241 (374)
T PF03514_consen 175 PF---EFHPVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIRSLNPKVVVL 241 (374)
T ss_pred cE---EEEecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHHhcCCCEEEE
Confidence 11 44332 33333 3444445566778998732 2456888888765544444
|
Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions. |
| >COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.22 Score=44.98 Aligned_cols=150 Identities=18% Similarity=0.221 Sum_probs=92.3
Q ss_pred CCeEEEECCCcccchHHHHhc-CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-------C---
Q 020710 149 GIAVCDAGCGTGSLAIPLAKQ-GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------D--- 217 (322)
Q Consensus 149 ~~~VLDvGcG~G~~~~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------~--- 217 (322)
-..|+-+|||--.-...+-.. +.+|+-+|. |+.++.=++.+.+.+..- +....++..|+.+. .
T Consensus 93 ~~qvViLgaGLDTRayRl~~~~~~~vfEvD~-Pevi~~K~~~l~e~~~~~-----~~~~~~Va~Dl~~~dw~~~L~~~G~ 166 (297)
T COG3315 93 IRQVVILGAGLDTRAYRLDWPKGTRVFEVDL-PEVIEFKKKLLAERGATP-----PAHRRLVAVDLREDDWPQALAAAGF 166 (297)
T ss_pred ccEEEEeccccccceeecCCCCCCeEEECCC-cHHHHHHHHHhhhcCCCC-----CceEEEEeccccccchHHHHHhcCC
Confidence 467999999976655444333 567888886 777777777777665321 11127888888742 2
Q ss_pred --CCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEECC---ChhhHHHH-HHhhccCCCCCC--ccccc-cCCHH
Q 020710 218 --GKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAP---KTFYYDLL-KRVGELFPGPSK--ATRAY-LHAEA 288 (322)
Q Consensus 218 --~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~---~~~~~~~~-~~~~~~~~~~~~--~~~~~-~~~~~ 288 (322)
..-=++++-.++.+++.++..+++..|....++|-.+.+.. .......- ............ ....| ..++.
T Consensus 167 d~~~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 246 (297)
T COG3315 167 DRSRPTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDYSLPGSLRDRLRRPAARKTMRGEDLDRGELVYFGDDPA 246 (297)
T ss_pred CcCCCeEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEeccccHHHHhcccchhhhhhccccccccccceeccCCHH
Confidence 23346788889999999989999999999876665444432 21111110 011111111000 10111 23589
Q ss_pred HHHHHHHHCCCEEEEE
Q 020710 289 DVERALQKVGWKIRKR 304 (322)
Q Consensus 289 ~~~~~l~~aGf~vv~~ 304 (322)
+++.++.+.||..+..
T Consensus 247 e~~~~l~~~g~~~~~~ 262 (297)
T COG3315 247 EIETWLAERGWRSTLN 262 (297)
T ss_pred HHHHHHHhcCEEEEec
Confidence 9999999999998765
|
|
| >PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.26 Score=45.02 Aligned_cols=166 Identities=16% Similarity=0.127 Sum_probs=91.8
Q ss_pred CCeEEEECCCc--ccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhcc-CCCC----CCCCCceEEcccccCCCCcc
Q 020710 149 GIAVCDAGCGT--GSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLAD-NGGE----APVMPKFEVKDLESLDGKYD 221 (322)
Q Consensus 149 ~~~VLDvGcG~--G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~-~~~~----~~~~~~~~~~d~~~~~~~fD 221 (322)
-.+|-=||+|+ ..++..++..|.+|+..|++++.++.++++........ +.+. ...++.+ ..|+++.-...|
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~-~~~l~~av~~aD 85 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRF-VATIEACVADAD 85 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhcee-cCCHHHHhcCCC
Confidence 35788999994 34455667779999999999998887766443211000 0000 0000111 123322235578
Q ss_pred EEEEcccccccCcch--HHHHHHHHHhccCCeEEEEECCChhhHH-HHHHhh---ccCC-CCCCcccc---------ccC
Q 020710 222 TVVCLDVLIHYPQSK--ADGMIAHLASLAEKRLILSFAPKTFYYD-LLKRVG---ELFP-GPSKATRA---------YLH 285 (322)
Q Consensus 222 ~V~~~~~l~~~~~~~--~~~~l~~l~~~~~~~~il~~~~~~~~~~-~~~~~~---~~~~-~~~~~~~~---------~~~ 285 (322)
+|+ +.++... ...+++++-+..+++.||..+....... +..... +++. ++.+..+. ..-
T Consensus 86 lVi-----EavpE~l~vK~~lf~~l~~~~~~~aIlaSnTS~l~~s~la~~~~~p~R~~g~HffnP~~~~pLVEVv~g~~T 160 (321)
T PRK07066 86 FIQ-----ESAPEREALKLELHERISRAAKPDAIIASSTSGLLPTDFYARATHPERCVVGHPFNPVYLLPLVEVLGGERT 160 (321)
T ss_pred EEE-----ECCcCCHHHHHHHHHHHHHhCCCCeEEEECCCccCHHHHHHhcCCcccEEEEecCCccccCceEEEeCCCCC
Confidence 888 4555322 3578888888888888877655544322 222111 0100 00011000 001
Q ss_pred ---CHHHHHHHHHHCCCEEEEEeeeecceehhhhhhhc
Q 020710 286 ---AEADVERALQKVGWKIRKRGLITTQFYFARLVEAV 320 (322)
Q Consensus 286 ---~~~~~~~~l~~aGf~vv~~~~~~~~~~f~~~~~~~ 320 (322)
..+.+.+++++.|.+.+.+......|..++++.++
T Consensus 161 ~~e~~~~~~~f~~~lGk~pV~v~kd~pGFi~NRl~~a~ 198 (321)
T PRK07066 161 APEAVDAAMGIYRALGMRPLHVRKEVPGFIADRLLEAL 198 (321)
T ss_pred CHHHHHHHHHHHHHcCCEeEecCCCCccHHHHHHHHHH
Confidence 33455678889999988876666788888877653
|
|
| >PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.36 Score=43.35 Aligned_cols=164 Identities=17% Similarity=0.086 Sum_probs=88.1
Q ss_pred CeEEEECCCccc--chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhh----ccCCCC------CCCCCceEEcccccCC
Q 020710 150 IAVCDAGCGTGS--LAIPLAKQGAIVSASDISAAMVAEARKKAEEELL----ADNGGE------APVMPKFEVKDLESLD 217 (322)
Q Consensus 150 ~~VLDvGcG~G~--~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~----~~~~~~------~~~~~~~~~~d~~~~~ 217 (322)
.+|.=||+|.-. ++..++..|.+|+.+|.+++.++.++++..+... ...... ...++. ...|+.+.-
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~d~~~a~ 82 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRIT-LTTDLAEAV 82 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeE-EeCCHHHHh
Confidence 468888998433 4455566689999999999999888766432110 000000 000001 233443333
Q ss_pred CCccEEEEcccccccCcc--hHHHHHHHHHhccCCeEEEEECCChhhH-HHHHHh-------hccC-CCCCCc-----cc
Q 020710 218 GKYDTVVCLDVLIHYPQS--KADGMIAHLASLAEKRLILSFAPKTFYY-DLLKRV-------GELF-PGPSKA-----TR 281 (322)
Q Consensus 218 ~~fD~V~~~~~l~~~~~~--~~~~~l~~l~~~~~~~~il~~~~~~~~~-~~~~~~-------~~~~-~~~~~~-----~~ 281 (322)
..-|+|+.+ ++.+ ....+++++....+++.++..+..+... ...... +-.+ ...... ..
T Consensus 83 ~~aDlViea-----vpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~~~~~~~~~~~~~~r~vg~Hf~~p~~~~~lvevv~ 157 (287)
T PRK08293 83 KDADLVIEA-----VPEDPEIKGDFYEELAKVAPEKTIFATNSSTLLPSQFAEATGRPEKFLALHFANEIWKNNTAEIMG 157 (287)
T ss_pred cCCCEEEEe-----ccCCHHHHHHHHHHHHhhCCCCCEEEECcccCCHHHHHhhcCCcccEEEEcCCCCCCcCCeEEEeC
Confidence 456888853 3332 2457788887766666666544443322 222211 1011 111000 00
Q ss_pred ccc---CCHHHHHHHHHHCCCEEEEEeeeecceehhhhhhh
Q 020710 282 AYL---HAEADVERALQKVGWKIRKRGLITTQFYFARLVEA 319 (322)
Q Consensus 282 ~~~---~~~~~~~~~l~~aGf~vv~~~~~~~~~~f~~~~~~ 319 (322)
... ...+.+.++++..|.+.+.+......|..++++..
T Consensus 158 ~~~t~~~~~~~~~~~~~~~Gk~pv~v~~d~pgfi~nRi~~~ 198 (287)
T PRK08293 158 HPGTDPEVFDTVVAFAKAIGMVPIVLKKEQPGYILNSLLVP 198 (287)
T ss_pred CCCCCHHHHHHHHHHHHHcCCeEEEecCCCCCHhHHHHHHH
Confidence 000 13445667889999998887767788888887654
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.053 Score=49.53 Aligned_cols=82 Identities=22% Similarity=0.190 Sum_probs=55.9
Q ss_pred CCCCCCeEEEECCC-cccchHHHHhc-CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcc---c-ccCCC
Q 020710 145 GSLKGIAVCDAGCG-TGSLAIPLAKQ-GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKD---L-ESLDG 218 (322)
Q Consensus 145 ~~~~~~~VLDvGcG-~G~~~~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d---~-~~~~~ 218 (322)
...++.+|+=+|+| .|.++..+++. |++|+++|.|++-.+.|++.-.. .++... . +...+
T Consensus 163 ~~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd--------------~~i~~~~~~~~~~~~~ 228 (339)
T COG1064 163 NVKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGAD--------------HVINSSDSDALEAVKE 228 (339)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCc--------------EEEEcCCchhhHHhHh
Confidence 34578899998887 55677888884 99999999999999988877544 333322 1 22244
Q ss_pred CccEEEEcccccccCcchHHHHHHHHH
Q 020710 219 KYDTVVCLDVLIHYPQSKADGMIAHLA 245 (322)
Q Consensus 219 ~fD~V~~~~~l~~~~~~~~~~~l~~l~ 245 (322)
.||+|+..-. . ..+...++.|+
T Consensus 229 ~~d~ii~tv~-~----~~~~~~l~~l~ 250 (339)
T COG1064 229 IADAIIDTVG-P----ATLEPSLKALR 250 (339)
T ss_pred hCcEEEECCC-h----hhHHHHHHHHh
Confidence 5999997654 2 12456666655
|
|
| >KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.06 Score=46.96 Aligned_cols=94 Identities=23% Similarity=0.274 Sum_probs=55.1
Q ss_pred CCeEEEECCCcccchHHHHhc-CCEEEEEeCCHHHHHHHHHHhHHhhhc-cCCCCCCCCCceEEcccccC------CCC-
Q 020710 149 GIAVCDAGCGTGSLAIPLAKQ-GAIVSASDISAAMVAEARKKAEEELLA-DNGGEAPVMPKFEVKDLESL------DGK- 219 (322)
Q Consensus 149 ~~~VLDvGcG~G~~~~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~-~~~~~~~~~~~~~~~d~~~~------~~~- 219 (322)
..+|||+|+|+|.-+...+.. +++|.-.|+... +...+.+....... ++.+- .+.....+.... ...
T Consensus 87 ~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~-~~~L~~~~~~~~~~l~~~g~---~v~v~~L~Wg~~~~~~~~~~~~ 162 (248)
T KOG2793|consen 87 YINVLELGSGTGLVGILAALLLGAEVVLTDLPKV-VENLKFNRDKNNIALNQLGG---SVIVAILVWGNALDVSFRLPNP 162 (248)
T ss_pred ceeEEEecCCccHHHHHHHHHhcceeccCCchhh-HHHHHHhhhhhhhhhhhcCC---ceeEEEEecCCcccHhhccCCc
Confidence 567999999999877777775 788988887543 33333332221111 10000 002222222221 344
Q ss_pred ccEEEEcccccccCcchHHHHHHHHHhcc
Q 020710 220 YDTVVCLDVLIHYPQSKADGMIAHLASLA 248 (322)
Q Consensus 220 fD~V~~~~~l~~~~~~~~~~~l~~l~~~~ 248 (322)
||+|+.+.++.+....+ .++..++.++
T Consensus 163 ~DlilasDvvy~~~~~e--~Lv~tla~ll 189 (248)
T KOG2793|consen 163 FDLILASDVVYEEESFE--GLVKTLAFLL 189 (248)
T ss_pred ccEEEEeeeeecCCcch--hHHHHHHHHH
Confidence 99999999987766533 6777777664
|
|
| >PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.038 Score=48.68 Aligned_cols=44 Identities=18% Similarity=0.324 Sum_probs=34.9
Q ss_pred CCeEEEECCCcccchHHHHhc----------CCEEEEEeCCHHHHHHHHHHhHH
Q 020710 149 GIAVCDAGCGTGSLAIPLAKQ----------GAIVSASDISAAMVAEARKKAEE 192 (322)
Q Consensus 149 ~~~VLDvGcG~G~~~~~la~~----------~~~v~gvD~s~~~l~~a~~~~~~ 192 (322)
+.+|+|+|.|+|.++..+++. ..+++-||+|+.+.+.-++++..
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 479999999999999888763 35899999999998888877765
|
; PDB: 4F3N_A 1ZKD_B. |
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.053 Score=42.99 Aligned_cols=76 Identities=20% Similarity=0.171 Sum_probs=49.2
Q ss_pred EEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC----CC-CccEEEEcccccccCc--------ch-H
Q 020710 172 IVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL----DG-KYDTVVCLDVLIHYPQ--------SK-A 237 (322)
Q Consensus 172 ~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~-~fD~V~~~~~l~~~~~--------~~-~ 237 (322)
+|+|.||-+++++..++++.+.+..+++ .++..+=+.+ +. ++|+++.+.. ++|. ++ -
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v-------~li~~sHe~l~~~i~~~~v~~~iFNLG--YLPggDk~i~T~~~TT 71 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRV-------TLILDSHENLDEYIPEGPVDAAIFNLG--YLPGGDKSITTKPETT 71 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGE-------EEEES-GGGGGGT--S--EEEEEEEES--B-CTS-TTSB--HHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcE-------EEEECCHHHHHhhCccCCcCEEEEECC--cCCCCCCCCCcCcHHH
Confidence 5899999999999999999998877655 7777765544 34 8999988754 5552 11 2
Q ss_pred HHHHHHHHhccCCeEEEEE
Q 020710 238 DGMIAHLASLAEKRLILSF 256 (322)
Q Consensus 238 ~~~l~~l~~~~~~~~il~~ 256 (322)
...++.+.+++.+||++++
T Consensus 72 l~Al~~al~lL~~gG~i~i 90 (140)
T PF06962_consen 72 LKALEAALELLKPGGIITI 90 (140)
T ss_dssp HHHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHhhccCCEEEE
Confidence 3455555556666665554
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >COG1255 Uncharacterized protein conserved in archaea [Function unknown] | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.12 Score=39.14 Aligned_cols=82 Identities=27% Similarity=0.284 Sum_probs=55.9
Q ss_pred CCeEEEECCCccc-chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC----CCCccEE
Q 020710 149 GIAVCDAGCGTGS-LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL----DGKYDTV 223 (322)
Q Consensus 149 ~~~VLDvGcG~G~-~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~~fD~V 223 (322)
.++|.|||-|-=. .+..|+++|+.|+++||.+. +.. .++ +|+..|+.++ -...|+|
T Consensus 14 ~gkVvEVGiG~~~~VA~~L~e~g~dv~atDI~~~-------~a~-~g~-----------~~v~DDitnP~~~iY~~A~lI 74 (129)
T COG1255 14 RGKVVEVGIGFFLDVAKRLAERGFDVLATDINEK-------TAP-EGL-----------RFVVDDITNPNISIYEGADLI 74 (129)
T ss_pred CCcEEEEccchHHHHHHHHHHcCCcEEEEecccc-------cCc-ccc-----------eEEEccCCCccHHHhhCccce
Confidence 5699999988543 35667788999999999876 222 222 8999999887 2567899
Q ss_pred EEcccccccCcchHHHHHHHHHhccCCeEEE
Q 020710 224 VCLDVLIHYPQSKADGMIAHLASLAEKRLIL 254 (322)
Q Consensus 224 ~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il 254 (322)
++. =|.+++...+-.+.+..+-..++
T Consensus 75 YSi-----RpppEl~~~ildva~aVga~l~I 100 (129)
T COG1255 75 YSI-----RPPPELQSAILDVAKAVGAPLYI 100 (129)
T ss_pred eec-----CCCHHHHHHHHHHHHhhCCCEEE
Confidence 863 24455666555555544545544
|
|
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.095 Score=47.57 Aligned_cols=106 Identities=19% Similarity=0.163 Sum_probs=61.1
Q ss_pred CCCCeEEEECCCcccchHHHHhc---CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccc----cC--C
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQ---GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLE----SL--D 217 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~----~~--~ 217 (322)
-.+.+|||||.|.|.-+..+... --+++.++.|+..-+............ ...+...|+. ++ .
T Consensus 112 fapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~--------~td~r~s~vt~dRl~lp~a 183 (484)
T COG5459 112 FAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTE--------KTDWRASDVTEDRLSLPAA 183 (484)
T ss_pred cCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccc--------cCCCCCCccchhccCCCcc
Confidence 45678999999999876655443 224777888886555544333322211 1133333432 22 3
Q ss_pred CCccEEEEcccccccCc-chHHHHHHHHHhcc-CCeEEEEECCCh
Q 020710 218 GKYDTVVCLDVLIHYPQ-SKADGMIAHLASLA-EKRLILSFAPKT 260 (322)
Q Consensus 218 ~~fD~V~~~~~l~~~~~-~~~~~~l~~l~~~~-~~~~il~~~~~~ 260 (322)
..|++|+..+-|-+... .++...++++..++ +||.++++.+++
T Consensus 184 d~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGt 228 (484)
T COG5459 184 DLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGT 228 (484)
T ss_pred ceeehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCC
Confidence 45666666554444443 22455788888765 455677777655
|
|
| >COG1565 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.071 Score=48.73 Aligned_cols=60 Identities=17% Similarity=0.281 Sum_probs=45.7
Q ss_pred HHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc----------CCEEEEEeCCHHHHHHHHHHhHHh
Q 020710 134 VENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ----------GAIVSASDISAAMVAEARKKAEEE 193 (322)
Q Consensus 134 ~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~----------~~~v~gvD~s~~~l~~a~~~~~~~ 193 (322)
...+++.+...+.+.+..++|+|.|+|.++..+++. .+++..|++|++..+.=+++++..
T Consensus 63 a~~~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~ 132 (370)
T COG1565 63 AEQFLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKAT 132 (370)
T ss_pred HHHHHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhcc
Confidence 345666666665455678999999999999887653 568999999999887766666544
|
|
| >KOG2920 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.012 Score=51.94 Aligned_cols=37 Identities=27% Similarity=0.417 Sum_probs=32.4
Q ss_pred CCCCeEEEECCCcccchHHHHhcC-CEEEEEeCCHHHH
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQG-AIVSASDISAAMV 183 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~~-~~v~gvD~s~~~l 183 (322)
-.+++|||+|||.|...+.....| ..+...|+|.+.+
T Consensus 115 ~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl 152 (282)
T KOG2920|consen 115 FSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVL 152 (282)
T ss_pred ecCceeEecCCcccccchhhhhhccceeeeEecchhhe
Confidence 357899999999999999988887 6799999988777
|
|
| >COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.099 Score=47.97 Aligned_cols=72 Identities=19% Similarity=0.252 Sum_probs=56.5
Q ss_pred CCeEEEECCCcccchHHHHhcCCE-EEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-----CC-Ccc
Q 020710 149 GIAVCDAGCGTGSLAIPLAKQGAI-VSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-----DG-KYD 221 (322)
Q Consensus 149 ~~~VLDvGcG~G~~~~~la~~~~~-v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-----~~-~fD 221 (322)
..+++|+-||.|.+...+...|.+ +.++|+++..++.-+.++... .+...|+... .. .+|
T Consensus 3 ~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~~-------------~~~~~di~~~~~~~~~~~~~D 69 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPHG-------------DIILGDIKELDGEALRKSDVD 69 (328)
T ss_pred CceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCCC-------------ceeechHhhcChhhccccCCC
Confidence 568999999999999999888987 789999999999888877631 5566666544 23 789
Q ss_pred EEEEcccccccC
Q 020710 222 TVVCLDVLIHYP 233 (322)
Q Consensus 222 ~V~~~~~l~~~~ 233 (322)
+++...-.+.+.
T Consensus 70 vligGpPCQ~FS 81 (328)
T COG0270 70 VLIGGPPCQDFS 81 (328)
T ss_pred EEEeCCCCcchh
Confidence 999876665554
|
|
| >PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.29 Score=40.86 Aligned_cols=99 Identities=17% Similarity=0.248 Sum_probs=62.8
Q ss_pred HHHHHHhhhcCCCCC-CeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhc--cCCCCCCCCCceE
Q 020710 135 ENTMQMLNDEGSLKG-IAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLA--DNGGEAPVMPKFE 209 (322)
Q Consensus 135 ~~~~~~l~~~~~~~~-~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~--~~~~~~~~~~~~~ 209 (322)
+.+.+.+... ++ ..|+.+|||--.....+... +.+++-+|. |++++.-++.+.+.+.. .. ..++
T Consensus 67 ~~v~~~i~~~---~~~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~-p~v~~~K~~~l~~~~~~~~~~-------~~~v 135 (183)
T PF04072_consen 67 DAVREFIAKH---PGARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDL-PEVIALKRRLLPESGARPPAN-------YRYV 135 (183)
T ss_dssp HHHHHHHHHH---TTESEEEEET-TT--HHHHHHHTTTTEEEEEEE--HHHHHHHHHHHHHTHHHHHEE-------SSEE
T ss_pred HHHHHhhccC---CCCcEEEEcCCCCCchHHHhhccccceEEEEeCC-HHHHHHHHHHHHhCcccCCcc-------eeEE
Confidence 3445555443 23 38999999998888888774 556777876 66777777776665332 11 1688
Q ss_pred EcccccC------------CCCccEEEEcccccccCcchHHHHHHHH
Q 020710 210 VKDLESL------------DGKYDTVVCLDVLIHYPQSKADGMIAHL 244 (322)
Q Consensus 210 ~~d~~~~------------~~~fD~V~~~~~l~~~~~~~~~~~l~~l 244 (322)
..|+.+. .+..-++++-.++.+++.+....+++.+
T Consensus 136 ~~Dl~~~~~~~~L~~~g~~~~~ptl~i~Egvl~Yl~~~~~~~ll~~i 182 (183)
T PF04072_consen 136 PADLRDDSWIDALPKAGFDPDRPTLFIAEGVLMYLSPEQVDALLRAI 182 (183)
T ss_dssp ES-TTSHHHHHHHHHCTT-TTSEEEEEEESSGGGS-HHHHHHHHHHH
T ss_pred eccccchhhHHHHHHhCCCCCCCeEEEEcchhhcCCHHHHHHHHHHh
Confidence 8888753 2344467777789999988888888776
|
It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A .... |
| >KOG2671 consensus Putative RNA methylase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.018 Score=51.94 Aligned_cols=74 Identities=27% Similarity=0.284 Sum_probs=57.2
Q ss_pred CCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHH-------HHHHhHHhhhccCCCCCCCCCceEEcccccC---
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAE-------ARKKAEEELLADNGGEAPVMPKFEVKDLESL--- 216 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~-------a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--- 216 (322)
.++.-|+|---|||.+....+..|+.|+|.||+-.|+.. .+.++++.+...+. .....+|....
T Consensus 207 ~pGdivyDPFVGTGslLvsaa~FGa~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~f------ldvl~~D~sn~~~r 280 (421)
T KOG2671|consen 207 KPGDIVYDPFVGTGSLLVSAAHFGAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQF------LDVLTADFSNPPLR 280 (421)
T ss_pred CCCCEEecCccccCceeeehhhhcceeeccccchheeecccCCCcchhHhHHHhCCcchh------hheeeecccCcchh
Confidence 578899999999999999999999999999999988872 34555555543311 25667777665
Q ss_pred -CCCccEEEEc
Q 020710 217 -DGKYDTVVCL 226 (322)
Q Consensus 217 -~~~fD~V~~~ 226 (322)
.-.||+|+|-
T Consensus 281 sn~~fDaIvcD 291 (421)
T KOG2671|consen 281 SNLKFDAIVCD 291 (421)
T ss_pred hcceeeEEEeC
Confidence 5689999983
|
|
| >KOG1501 consensus Arginine N-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.047 Score=50.83 Aligned_cols=51 Identities=33% Similarity=0.422 Sum_probs=45.2
Q ss_pred CCeEEEECCCcccchHHHHhcCC-EEEEEeCCHHHHHHHHHHhHHhhhccCC
Q 020710 149 GIAVCDAGCGTGSLAIPLAKQGA-IVSASDISAAMVAEARKKAEEELLADNG 199 (322)
Q Consensus 149 ~~~VLDvGcG~G~~~~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~ 199 (322)
...|||||.|||.++...+..|+ .|++++.=..|++.|++...+++..+++
T Consensus 67 kv~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~SdkI 118 (636)
T KOG1501|consen 67 KVFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMSDKI 118 (636)
T ss_pred eEEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCccce
Confidence 45799999999999998888866 5999999999999999999999988754
|
|
| >PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.025 Score=47.74 Aligned_cols=109 Identities=21% Similarity=0.124 Sum_probs=60.0
Q ss_pred CCCeEEEECCCcccchHHHHhc----CCEEEEEeCCHHHHHHHHHHhHH---hhhccCC-----------C---------
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQ----GAIVSASDISAAMVAEARKKAEE---ELLADNG-----------G--------- 200 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~----~~~v~gvD~s~~~l~~a~~~~~~---~~~~~~~-----------~--------- 200 (322)
.+-++.|-.||.|+++-.+.-. =..|+|.|+++++++.|++++.- .|+..|. +
T Consensus 51 ~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~s 130 (246)
T PF11599_consen 51 GPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALES 130 (246)
T ss_dssp S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred CCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHHH
Confidence 4679999999999998766543 23699999999999999876521 0000000 0
Q ss_pred ---------C--CCCCCceEEcccccC--------CCCccEEEEcccccccC-------cchHHHHHHHHHhccCCeEEE
Q 020710 201 ---------E--APVMPKFEVKDLESL--------DGKYDTVVCLDVLIHYP-------QSKADGMIAHLASLAEKRLIL 254 (322)
Q Consensus 201 ---------~--~~~~~~~~~~d~~~~--------~~~fD~V~~~~~l~~~~-------~~~~~~~l~~l~~~~~~~~il 254 (322)
. ........+.|+.+. ....|+|+.---.-++. .....+||..++.+++...|+
T Consensus 131 A~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp~~sVV 210 (246)
T PF11599_consen 131 ADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVLPERSVV 210 (246)
T ss_dssp HHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS-TT-EE
T ss_pred HHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhCCCCcEE
Confidence 0 011124566677663 34469988743333322 123678999999988776666
Q ss_pred EE
Q 020710 255 SF 256 (322)
Q Consensus 255 ~~ 256 (322)
.+
T Consensus 211 ~v 212 (246)
T PF11599_consen 211 AV 212 (246)
T ss_dssp EE
T ss_pred EE
Confidence 55
|
This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A. |
| >PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.22 Score=38.60 Aligned_cols=84 Identities=26% Similarity=0.290 Sum_probs=46.9
Q ss_pred CCCeEEEECCCcccc-hHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccCC----CCccE
Q 020710 148 KGIAVCDAGCGTGSL-AIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESLD----GKYDT 222 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~-~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~fD~ 222 (322)
...+|.|||-|.=.. +..|.+.|+.|+++|+.+. ... .++ .|+..|+.+++ ...|+
T Consensus 13 ~~~kiVEVGiG~~~~vA~~L~~~G~dV~~tDi~~~-------~a~-~g~-----------~~v~DDif~P~l~iY~~a~l 73 (127)
T PF03686_consen 13 NYGKIVEVGIGFNPEVAKKLKERGFDVIATDINPR-------KAP-EGV-----------NFVVDDIFNPNLEIYEGADL 73 (127)
T ss_dssp -SSEEEEET-TT--HHHHHHHHHS-EEEEE-SS-S------------ST-----------TEE---SSS--HHHHTTEEE
T ss_pred CCCcEEEECcCCCHHHHHHHHHcCCcEEEEECccc-------ccc-cCc-----------ceeeecccCCCHHHhcCCcE
Confidence 356999999986543 5556667999999999987 112 222 89999998873 56899
Q ss_pred EEEcccccccCcchHHHHHHHHHhccCCeEEEE
Q 020710 223 VVCLDVLIHYPQSKADGMIAHLASLAEKRLILS 255 (322)
Q Consensus 223 V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~ 255 (322)
|++.. |.+++...+-++++..+-.+++.
T Consensus 74 IYSiR-----PP~El~~~il~lA~~v~adlii~ 101 (127)
T PF03686_consen 74 IYSIR-----PPPELQPPILELAKKVGADLIIR 101 (127)
T ss_dssp EEEES-------TTSHHHHHHHHHHHT-EEEEE
T ss_pred EEEeC-----CChHHhHHHHHHHHHhCCCEEEE
Confidence 98642 34446666666666556666553
|
; PDB: 2K4M_A. |
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.17 Score=42.82 Aligned_cols=100 Identities=18% Similarity=0.074 Sum_probs=49.6
Q ss_pred CCCeEEEECCCcccchHHHHhc------CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-----
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQ------GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL----- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~------~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~----- 216 (322)
++..|+|+|.-.|..+..++.. .++|+|||++...... +....+....+ ++|+++|..+.
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~--~a~e~hp~~~r-------I~~i~Gds~d~~~~~~ 102 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNR--KAIESHPMSPR-------ITFIQGDSIDPEIVDQ 102 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S---GGGG----TT-------EEEEES-SSSTHHHHT
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhch--HHHhhccccCc-------eEEEECCCCCHHHHHH
Confidence 5789999999999998887753 4689999996433221 11222222233 39999997664
Q ss_pred ----CCCcc-EEEEcccccccCcchHHHHHHHHHhccCCeEEEEECC
Q 020710 217 ----DGKYD-TVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAP 258 (322)
Q Consensus 217 ----~~~fD-~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~ 258 (322)
....+ ++++.++=|.... +.+.|+....++.+|.++++..
T Consensus 103 v~~~~~~~~~vlVilDs~H~~~h--vl~eL~~y~plv~~G~Y~IVeD 147 (206)
T PF04989_consen 103 VRELASPPHPVLVILDSSHTHEH--VLAELEAYAPLVSPGSYLIVED 147 (206)
T ss_dssp SGSS----SSEEEEESS----SS--HHHHHHHHHHT--TT-EEEETS
T ss_pred HHHhhccCCceEEEECCCccHHH--HHHHHHHhCccCCCCCEEEEEe
Confidence 11223 2344444333333 5566777777777777776643
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.42 Score=39.95 Aligned_cols=145 Identities=17% Similarity=0.061 Sum_probs=75.6
Q ss_pred CCCCCeEEEECCCcccchHHHHhc-CC--EEEEEeCCHHHH----H--HHHHHhHHhhhccCCCCCCCCCceEEccccc-
Q 020710 146 SLKGIAVCDAGCGTGSLAIPLAKQ-GA--IVSASDISAAMV----A--EARKKAEEELLADNGGEAPVMPKFEVKDLES- 215 (322)
Q Consensus 146 ~~~~~~VLDvGcG~G~~~~~la~~-~~--~v~gvD~s~~~l----~--~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~- 215 (322)
..++.+|+|+--|.|++++-++.. |. .|++.-..+... . ..+....+....| .+.+-.+...
T Consensus 46 lkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN--------~e~~~~~~~A~ 117 (238)
T COG4798 46 LKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYAN--------VEVIGKPLVAL 117 (238)
T ss_pred cCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhh--------hhhhCCccccc
Confidence 457899999999999999999876 32 566654332210 0 0011111111111 1222222211
Q ss_pred -CCCCccEEEEccccccc-----CcchHHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCCCCCccccccCCHHH
Q 020710 216 -LDGKYDTVVCLDVLIHY-----PQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEAD 289 (322)
Q Consensus 216 -~~~~fD~V~~~~~l~~~-----~~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (322)
.....|+++.....|.+ ......++.+.+.+.+++||++.+..+.... +.-. .....-+ ..+...
T Consensus 118 ~~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~p------G~~~--~dt~~~~-ri~~a~ 188 (238)
T COG4798 118 GAPQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADP------GSGL--SDTITLH-RIDPAV 188 (238)
T ss_pred CCCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccC------CCCh--hhhhhhc-ccChHH
Confidence 13445555543332222 1233568888888888777776654332110 0000 0011111 246788
Q ss_pred HHHHHHHCCCEEEEEeee
Q 020710 290 VERALQKVGWKIRKRGLI 307 (322)
Q Consensus 290 ~~~~l~~aGf~vv~~~~~ 307 (322)
+.+..+.+||+..-...+
T Consensus 189 V~a~veaaGFkl~aeS~i 206 (238)
T COG4798 189 VIAEVEAAGFKLEAESEI 206 (238)
T ss_pred HHHHHHhhcceeeeeehh
Confidence 899999999998765444
|
|
| >PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3) | Back alignment and domain information |
|---|
Probab=94.85 E-value=0.013 Score=44.04 Aligned_cols=78 Identities=19% Similarity=0.288 Sum_probs=45.1
Q ss_pred CccEEEEcccccccC----cchHHHHHHHHHhccCCeEEEEECCChhhHHH-----HHHhhccCCCCCCccccccCCHHH
Q 020710 219 KYDTVVCLDVLIHYP----QSKADGMIAHLASLAEKRLILSFAPKTFYYDL-----LKRVGELFPGPSKATRAYLHAEAD 289 (322)
Q Consensus 219 ~fD~V~~~~~l~~~~----~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 289 (322)
+||+|+|..+.-++. |+.+..+++++.+++.+|+++++.|..|..-- ...+...+ ...-+.+++
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ~w~sY~~~~~~~~~~~~n~-------~~i~lrP~~ 73 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQPWKSYKKAKRLSEEIRENY-------KSIKLRPDQ 73 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE---HHHHHTTTTS-HHHHHHH-------HH----GGG
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCCCcHHHHHHhhhhHHHHhHH-------hceEEChHH
Confidence 499999999876543 67788999999999999999999887653210 00111110 011134567
Q ss_pred HHHHHHH--CCCEEEE
Q 020710 290 VERALQK--VGWKIRK 303 (322)
Q Consensus 290 ~~~~l~~--aGf~vv~ 303 (322)
+++.|.+ .||+.++
T Consensus 74 F~~~L~~~evGF~~~e 89 (110)
T PF06859_consen 74 FEDYLLEPEVGFSSVE 89 (110)
T ss_dssp HHHHHTSTTT---EEE
T ss_pred HHHHHHhcccceEEEE
Confidence 8888887 5998776
|
Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B. |
| >PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.92 Score=37.72 Aligned_cols=104 Identities=25% Similarity=0.231 Sum_probs=58.7
Q ss_pred eEEEECCCccc--chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhh----ccCCC-----CCCCCCceEEcccccCCCC
Q 020710 151 AVCDAGCGTGS--LAIPLAKQGAIVSASDISAAMVAEARKKAEEELL----ADNGG-----EAPVMPKFEVKDLESLDGK 219 (322)
Q Consensus 151 ~VLDvGcG~G~--~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~----~~~~~-----~~~~~~~~~~~d~~~~~~~ 219 (322)
+|.=||+|+=. ++..++..|.+|+.+|.+++.++.+++++...-. ..+.. ....+ --...|+++.. .
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~-i~~~~dl~~~~-~ 78 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALAR-ISFTTDLEEAV-D 78 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHT-EEEESSGGGGC-T
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhh-cccccCHHHHh-h
Confidence 35668887533 3444556699999999999999988877654110 00000 00000 12345566555 7
Q ss_pred ccEEEEcccccccCcc--hHHHHHHHHHhccCCeEEEEECCChh
Q 020710 220 YDTVVCLDVLIHYPQS--KADGMIAHLASLAEKRLILSFAPKTF 261 (322)
Q Consensus 220 fD~V~~~~~l~~~~~~--~~~~~l~~l~~~~~~~~il~~~~~~~ 261 (322)
.|+|+ +-++.+ ...++++++.+..++..+|..+..++
T Consensus 79 adlVi-----Eai~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl 117 (180)
T PF02737_consen 79 ADLVI-----EAIPEDLELKQELFAELDEICPPDTILASNTSSL 117 (180)
T ss_dssp ESEEE-----E-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS
T ss_pred hheeh-----hhccccHHHHHHHHHHHHHHhCCCceEEecCCCC
Confidence 88888 444432 14689999999887777776655443
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... |
| >KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.14 Score=47.69 Aligned_cols=72 Identities=14% Similarity=0.177 Sum_probs=57.6
Q ss_pred CCCCCeEEEECCCcccchHHHHhc---CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-----C
Q 020710 146 SLKGIAVCDAGCGTGSLAIPLAKQ---GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-----D 217 (322)
Q Consensus 146 ~~~~~~VLDvGcG~G~~~~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-----~ 217 (322)
++++.+|||..+..|.=+.++|.. -..|++.|.+..-++..+.++...|+.+ ......|..++ .
T Consensus 239 Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~n--------tiv~n~D~~ef~~~~~~ 310 (460)
T KOG1122|consen 239 PQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTN--------TIVSNYDGREFPEKEFP 310 (460)
T ss_pred CCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCc--------eEEEccCcccccccccC
Confidence 468899999999999988888766 3469999999999999999999998876 23455565433 4
Q ss_pred CCccEEEE
Q 020710 218 GKYDTVVC 225 (322)
Q Consensus 218 ~~fD~V~~ 225 (322)
++||-|+.
T Consensus 311 ~~fDRVLL 318 (460)
T KOG1122|consen 311 GSFDRVLL 318 (460)
T ss_pred cccceeee
Confidence 58999994
|
|
| >KOG1227 consensus Putative methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.058 Score=47.84 Aligned_cols=97 Identities=25% Similarity=0.225 Sum_probs=67.6
Q ss_pred CCCeEEEECCCcccchH-HHHhcCC-EEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--CCCccEE
Q 020710 148 KGIAVCDAGCGTGSLAI-PLAKQGA-IVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL--DGKYDTV 223 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~-~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~fD~V 223 (322)
.+..|.|+-+|.|+++. .|...|+ .|.++|++|..++..++.+..++..+++ ....+|-... +...|-|
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~-------~i~~gd~R~~~~~~~AdrV 266 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRC-------RITEGDNRNPKPRLRADRV 266 (351)
T ss_pred ccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHH-------HhhhccccccCccccchhe
Confidence 45789999999999999 5556676 4999999999999999999887776655 5566665443 6788888
Q ss_pred EEcccccccCcch--HHHHHHHHHhccCCeEEEEEC
Q 020710 224 VCLDVLIHYPQSK--ADGMIAHLASLAEKRLILSFA 257 (322)
Q Consensus 224 ~~~~~l~~~~~~~--~~~~l~~l~~~~~~~~il~~~ 257 (322)
.. --+|..+ +....+.|+ ..+|.++-+.
T Consensus 267 nL----GLlPSse~~W~~A~k~Lk--~eggsilHIH 296 (351)
T KOG1227|consen 267 NL----GLLPSSEQGWPTAIKALK--PEGGSILHIH 296 (351)
T ss_pred ee----ccccccccchHHHHHHhh--hcCCcEEEEe
Confidence 75 3445322 334444444 2444466543
|
|
| >PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.12 E-value=1.8 Score=38.64 Aligned_cols=162 Identities=19% Similarity=0.138 Sum_probs=86.1
Q ss_pred CeEEEECCC--cccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHh-------hhccCCCC--CCCCCceEEcccccCCC
Q 020710 150 IAVCDAGCG--TGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEE-------LLADNGGE--APVMPKFEVKDLESLDG 218 (322)
Q Consensus 150 ~~VLDvGcG--~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~-------~~~~~~~~--~~~~~~~~~~d~~~~~~ 218 (322)
.+|.=||+| .+.++..++..|.+|+++|++++.++.++++..+. +....... ....+. ...|... -.
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~-~~~~~~~-~~ 81 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARIT-GTTDLDD-LK 81 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeE-EeCCHHH-hc
Confidence 368888998 45566667777999999999999997766443221 10000000 000001 1233332 35
Q ss_pred CccEEEEcccccccCc-ch-HHHHHHHHHhccCCeEEEEECCChhhHHHH-HHhh---c----cCCCCCC---------c
Q 020710 219 KYDTVVCLDVLIHYPQ-SK-ADGMIAHLASLAEKRLILSFAPKTFYYDLL-KRVG---E----LFPGPSK---------A 279 (322)
Q Consensus 219 ~fD~V~~~~~l~~~~~-~~-~~~~l~~l~~~~~~~~il~~~~~~~~~~~~-~~~~---~----~~~~~~~---------~ 279 (322)
..|+|+. -.++ .. ...+++++.+..+++.++..+........+ .... + .+..+.. .
T Consensus 82 ~aDlVi~-----av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~~~~~~la~~~~~~~r~ig~h~~~P~~~~~~vev~~g 156 (282)
T PRK05808 82 DADLVIE-----AATENMDLKKKIFAQLDEIAKPEAILATNTSSLSITELAAATKRPDKVIGMHFFNPVPVMKLVEIIRG 156 (282)
T ss_pred cCCeeee-----cccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhhCCCcceEEeeccCCcccCccEEEeCC
Confidence 5788884 3332 11 248888888877766666443332222222 2111 0 1110000 0
Q ss_pred cccccCCHHHHHHHHHHCCCEEEEEeeeecceehhhhhhh
Q 020710 280 TRAYLHAEADVERALQKVGWKIRKRGLITTQFYFARLVEA 319 (322)
Q Consensus 280 ~~~~~~~~~~~~~~l~~aGf~vv~~~~~~~~~~f~~~~~~ 319 (322)
....--..+.+.+++...|..++.+ .....|...+++..
T Consensus 157 ~~t~~e~~~~~~~l~~~lGk~pv~~-~d~~g~i~~Ri~~~ 195 (282)
T PRK05808 157 LATSDATHEAVEALAKKIGKTPVEV-KNAPGFVVNRILIP 195 (282)
T ss_pred CCCCHHHHHHHHHHHHHcCCeeEEe-cCccChHHHHHHHH
Confidence 0000114556778999999999887 45577777776643
|
|
| >COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=94.05 E-value=0.28 Score=40.80 Aligned_cols=93 Identities=19% Similarity=0.079 Sum_probs=63.1
Q ss_pred CCCeEEEECCCcccchHHHHhc----C--CEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-----
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQ----G--AIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL----- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~----~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~----- 216 (322)
++..|+|.|.-.|..+..++.. | .+|+++||+-..++.+.... ..+.|+.++-.++
T Consensus 69 ~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e~-------------p~i~f~egss~dpai~eq 135 (237)
T COG3510 69 QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAAREV-------------PDILFIEGSSTDPAIAEQ 135 (237)
T ss_pred CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhcC-------------CCeEEEeCCCCCHHHHHH
Confidence 5789999999999998888765 5 78999999876654443221 1238888886654
Q ss_pred -----CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEE
Q 020710 217 -----DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILS 255 (322)
Q Consensus 217 -----~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~ 255 (322)
.+.--+.+|..+-||+.. ..+.++.+..++--|-++.
T Consensus 136 i~~~~~~y~kIfvilDsdHs~~h--vLAel~~~~pllsaG~Y~v 177 (237)
T COG3510 136 IRRLKNEYPKIFVILDSDHSMEH--VLAELKLLAPLLSAGDYLV 177 (237)
T ss_pred HHHHhcCCCcEEEEecCCchHHH--HHHHHHHhhhHhhcCceEE
Confidence 344456667778777655 5566666666654444443
|
|
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=94.03 E-value=0.27 Score=49.63 Aligned_cols=128 Identities=22% Similarity=0.221 Sum_probs=68.7
Q ss_pred CCCeEEEECCCcccchHHHHhc--------------CCEEEEEeCCH---HHHHHHHHHhHH------h---hhccCC-C
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQ--------------GAIVSASDISA---AMVAEARKKAEE------E---LLADNG-G 200 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~--------------~~~v~gvD~s~---~~l~~a~~~~~~------~---~~~~~~-~ 200 (322)
+.-+|||+|-|+|.+.....+. -.+++++|..| +.+..+-+.... . .....+ +
T Consensus 57 ~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 136 (662)
T PRK01747 57 RRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPG 136 (662)
T ss_pred CcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCC
Confidence 3579999999999987665421 13688999543 444333221110 0 000000 0
Q ss_pred C-------CCCCCceEEcccccC----CCCccEEEEccc-ccccCcchHHHHHHHHHhccCCeEEEE-ECCChhhHHHHH
Q 020710 201 E-------APVMPKFEVKDLESL----DGKYDTVVCLDV-LIHYPQSKADGMIAHLASLAEKRLILS-FAPKTFYYDLLK 267 (322)
Q Consensus 201 ~-------~~~~~~~~~~d~~~~----~~~fD~V~~~~~-l~~~~~~~~~~~l~~l~~~~~~~~il~-~~~~~~~~~~~~ 267 (322)
. .....+...+|+.+. ...||+|+.-.. -.+-|+---..+++.|+++..+++.+. ++
T Consensus 137 ~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~t---------- 206 (662)
T PRK01747 137 CHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLATFT---------- 206 (662)
T ss_pred ceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEEee----------
Confidence 0 001224556676443 466888886432 112222112578888888876666553 32
Q ss_pred HhhccCCCCCCccccccCCHHHHHHHHHHCCCEEEE
Q 020710 268 RVGELFPGPSKATRAYLHAEADVERALQKVGWKIRK 303 (322)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~vv~ 303 (322)
....+++.|.++||++.+
T Consensus 207 ------------------~a~~vr~~l~~~GF~v~~ 224 (662)
T PRK01747 207 ------------------SAGFVRRGLQEAGFTVRK 224 (662)
T ss_pred ------------------hHHHHHHHHHHcCCeeee
Confidence 234677777777777754
|
|
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=94.02 E-value=0.41 Score=36.34 Aligned_cols=55 Identities=29% Similarity=0.294 Sum_probs=38.7
Q ss_pred CCcccchHHHHhc----CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-------CCCccEEEE
Q 020710 157 CGTGSLAIPLAKQ----GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------DGKYDTVVC 225 (322)
Q Consensus 157 cG~G~~~~~la~~----~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------~~~fD~V~~ 225 (322)
||.|.++..+++. +..|+.+|.+++.++.+++.. . .++.+|..+. -...|.|++
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~----~-----------~~i~gd~~~~~~l~~a~i~~a~~vv~ 68 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEG----V-----------EVIYGDATDPEVLERAGIEKADAVVI 68 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTT----S-----------EEEES-TTSHHHHHHTTGGCESEEEE
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcc----c-----------ccccccchhhhHHhhcCccccCEEEE
Confidence 5666777777654 558999999999877776443 1 7888998775 367888876
Q ss_pred c
Q 020710 226 L 226 (322)
Q Consensus 226 ~ 226 (322)
.
T Consensus 69 ~ 69 (116)
T PF02254_consen 69 L 69 (116)
T ss_dssp E
T ss_pred c
Confidence 4
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >PRK10458 DNA cytosine methylase; Provisional | Back alignment and domain information |
|---|
Probab=93.82 E-value=1.1 Score=43.20 Aligned_cols=42 Identities=17% Similarity=0.146 Sum_probs=36.8
Q ss_pred CCeEEEECCCcccchHHHHhcCCE-EEEEeCCHHHHHHHHHHh
Q 020710 149 GIAVCDAGCGTGSLAIPLAKQGAI-VSASDISAAMVAEARKKA 190 (322)
Q Consensus 149 ~~~VLDvGcG~G~~~~~la~~~~~-v~gvD~s~~~l~~a~~~~ 190 (322)
..+++|+-||.|.+...+-..|.+ |.++|+++.+.+.-+.++
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~ 130 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANW 130 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHc
Confidence 568999999999999999888886 678999999888877765
|
|
| >PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=93.79 E-value=3.2 Score=37.21 Aligned_cols=162 Identities=17% Similarity=0.170 Sum_probs=84.9
Q ss_pred CeEEEECCCc--ccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHh--hhc-----cCCC-CC----CCCCceEEccccc
Q 020710 150 IAVCDAGCGT--GSLAIPLAKQGAIVSASDISAAMVAEARKKAEEE--LLA-----DNGG-EA----PVMPKFEVKDLES 215 (322)
Q Consensus 150 ~~VLDvGcG~--G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~--~~~-----~~~~-~~----~~~~~~~~~d~~~ 215 (322)
.+|.=||||. +.++..++..|.+|+.+|.+++.++.++++.... +.. .... .+ ..++. ...|...
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~-~~~~~~~ 82 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIR-TSTSYES 82 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcE-eeCCHHH
Confidence 4688899983 3355566677999999999999998776654321 110 0000 00 00001 1122221
Q ss_pred CCCCccEEEEcccccccCcch--HHHHHHHHHhccCCeEEEEECCChhhH-HHHHHhhc-------cCCC-CC--Cc---
Q 020710 216 LDGKYDTVVCLDVLIHYPQSK--ADGMIAHLASLAEKRLILSFAPKTFYY-DLLKRVGE-------LFPG-PS--KA--- 279 (322)
Q Consensus 216 ~~~~fD~V~~~~~l~~~~~~~--~~~~l~~l~~~~~~~~il~~~~~~~~~-~~~~~~~~-------~~~~-~~--~~--- 279 (322)
-...|+|+.+ ++.+. ...+++++.+..+++.++..+...... .+...... .+.. .. ..
T Consensus 83 -~~~aDlViea-----v~e~~~~k~~~~~~l~~~~~~~~il~S~tsg~~~~~la~~~~~~~r~ig~hf~~P~~~~~~vEv 156 (291)
T PRK06035 83 -LSDADFIVEA-----VPEKLDLKRKVFAELERNVSPETIIASNTSGIMIAEIATALERKDRFIGMHWFNPAPVMKLIEV 156 (291)
T ss_pred -hCCCCEEEEc-----CcCcHHHHHHHHHHHHhhCCCCeEEEEcCCCCCHHHHHhhcCCcccEEEEecCCCcccCccEEE
Confidence 2446888853 33322 457788888766666555443333222 22221111 1111 00 00
Q ss_pred cccccC---CHHHHHHHHHHCCCEEEEEeeeecceehhhhhhh
Q 020710 280 TRAYLH---AEADVERALQKVGWKIRKRGLITTQFYFARLVEA 319 (322)
Q Consensus 280 ~~~~~~---~~~~~~~~l~~aGf~vv~~~~~~~~~~f~~~~~~ 319 (322)
..+..- ..+.+..+++..|..++.+. ....|..++++..
T Consensus 157 ~~g~~T~~e~~~~~~~~~~~lgk~~v~v~-d~pgfv~nRl~~~ 198 (291)
T PRK06035 157 VRAALTSEETFNTTVELSKKIGKIPIEVA-DVPGFFTTRFIEG 198 (291)
T ss_pred eCCCCCCHHHHHHHHHHHHHcCCeEEEeC-CCCCeeHHHHHHH
Confidence 000111 34455678889999999884 5678887777643
|
|
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=93.77 E-value=0.44 Score=46.24 Aligned_cols=43 Identities=30% Similarity=0.322 Sum_probs=35.0
Q ss_pred CCCCeEEEECCCc-ccchHHHHhc-CCEEEEEeCCHHHHHHHHHH
Q 020710 147 LKGIAVCDAGCGT-GSLAIPLAKQ-GAIVSASDISAAMVAEARKK 189 (322)
Q Consensus 147 ~~~~~VLDvGcG~-G~~~~~la~~-~~~v~gvD~s~~~l~~a~~~ 189 (322)
.++.+|+=+|||. |..+...++. |++|+++|.+++.++.+++.
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aesl 207 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESM 207 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc
Confidence 4688999999995 5566666665 99999999999988888763
|
|
| >KOG2078 consensus tRNA modification enzyme [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.69 E-value=0.044 Score=50.89 Aligned_cols=50 Identities=28% Similarity=0.438 Sum_probs=44.9
Q ss_pred CCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhc
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLA 196 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~ 196 (322)
.++..|+|+-||.|-+...++.++|+|++-|+++++++..+.++....+.
T Consensus 248 k~gevv~D~FaGvGPfa~Pa~kK~crV~aNDLNpesik~Lk~ni~lNkv~ 297 (495)
T KOG2078|consen 248 KPGEVVCDVFAGVGPFALPAAKKGCRVYANDLNPESIKWLKANIKLNKVD 297 (495)
T ss_pred CCcchhhhhhcCcCccccchhhcCcEEEecCCCHHHHHHHHHhccccccc
Confidence 46889999999999999999999999999999999999999887665443
|
|
| >KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.42 E-value=0.29 Score=44.97 Aligned_cols=41 Identities=32% Similarity=0.328 Sum_probs=34.8
Q ss_pred CCCeEEEECCCcccchHHHHhc-CCEEEEEeCCHHHHHHHHH
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQ-GAIVSASDISAAMVAEARK 188 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~-~~~v~gvD~s~~~l~~a~~ 188 (322)
.-..|+|+|.|.|.+++.+.-. |..|.+||-|....+.|++
T Consensus 153 gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 153 GIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred CCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHH
Confidence 4568999999999999999866 8899999999777776654
|
|
| >PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=93.27 E-value=2.9 Score=37.85 Aligned_cols=162 Identities=19% Similarity=0.176 Sum_probs=82.2
Q ss_pred CeEEEECCCc--ccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHh-hhccCCCCC-CCCCce-EEcccccCCCCccEEE
Q 020710 150 IAVCDAGCGT--GSLAIPLAKQGAIVSASDISAAMVAEARKKAEEE-LLADNGGEA-PVMPKF-EVKDLESLDGKYDTVV 224 (322)
Q Consensus 150 ~~VLDvGcG~--G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~-~~~~~~~~~-~~~~~~-~~~d~~~~~~~fD~V~ 224 (322)
.+|.=||+|. +.++..++..|.+|+.+|.+++.++.+++..... +........ ...... ...|..+.-...|+|+
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~aDlVi 84 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVSGADLVI 84 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhccCCEEE
Confidence 5688899984 3345566667899999999999988887653221 110000000 000001 1223333234579988
Q ss_pred EcccccccCcc--hHHHHHHHHHhccCCeEEEEECCChhhH-HHHHHhhc-------cCCCCCCcc------ccc---cC
Q 020710 225 CLDVLIHYPQS--KADGMIAHLASLAEKRLILSFAPKTFYY-DLLKRVGE-------LFPGPSKAT------RAY---LH 285 (322)
Q Consensus 225 ~~~~l~~~~~~--~~~~~l~~l~~~~~~~~il~~~~~~~~~-~~~~~~~~-------~~~~~~~~~------~~~---~~ 285 (322)
. -++++ ....++..+....+++.++......... .+...... .+..+.... ... --
T Consensus 85 ~-----av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg~~~~~l~~~~~~~~~~ig~h~~~p~~~~~l~~i~~g~~t~~~ 159 (311)
T PRK06130 85 E-----AVPEKLELKRDVFARLDGLCDPDTIFATNTSGLPITAIAQAVTRPERFVGTHFFTPADVIPLVEVVRGDKTSPQ 159 (311)
T ss_pred E-----eccCcHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEccCCCCccCceEEEeCCCCCCHH
Confidence 5 34432 1456788887766666555443322221 22122111 111110000 000 01
Q ss_pred CHHHHHHHHHHCCCEEEEEeeeecceehhhh
Q 020710 286 AEADVERALQKVGWKIRKRGLITTQFYFARL 316 (322)
Q Consensus 286 ~~~~~~~~l~~aGf~vv~~~~~~~~~~f~~~ 316 (322)
..+.+.++++..|..++........|..+++
T Consensus 160 ~~~~v~~l~~~~G~~~v~~~~d~~G~i~nr~ 190 (311)
T PRK06130 160 TVATTMALLRSIGKRPVLVKKDIPGFIANRI 190 (311)
T ss_pred HHHHHHHHHHHcCCEEEEEcCCCCCcHHHHH
Confidence 3456788999999988777544455555554
|
|
| >PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=93.24 E-value=2.8 Score=37.61 Aligned_cols=162 Identities=14% Similarity=0.098 Sum_probs=85.4
Q ss_pred eEEEECCCc--ccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHh---hhcc-CCCC-----CCCCCceEEcccccCCCC
Q 020710 151 AVCDAGCGT--GSLAIPLAKQGAIVSASDISAAMVAEARKKAEEE---LLAD-NGGE-----APVMPKFEVKDLESLDGK 219 (322)
Q Consensus 151 ~VLDvGcG~--G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~---~~~~-~~~~-----~~~~~~~~~~d~~~~~~~ 219 (322)
+|.=||+|. +.++..+++.|.+|+.+|.+++.++.+.++.... +... .+.. ....+. ...|+.+.-..
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~-~~~~~~~~~~~ 81 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLS-YSLDLKAAVAD 81 (288)
T ss_pred EEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeE-EeCcHHHhhcC
Confidence 577888873 3345566677999999999999999887654321 1100 0000 000001 12333333345
Q ss_pred ccEEEEcccccccCcch--HHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhc--------cCCCCCCcccc-------
Q 020710 220 YDTVVCLDVLIHYPQSK--ADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGE--------LFPGPSKATRA------- 282 (322)
Q Consensus 220 fD~V~~~~~l~~~~~~~--~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~------- 282 (322)
.|+|+.+ ++++. ...+++++.+..+++.++..+..+.....+..... .+..+.....-
T Consensus 82 aD~Vi~a-----vpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~~~l~~~~~~~~r~~g~h~~~Pv~~~~Lve~v~g~ 156 (288)
T PRK09260 82 ADLVIEA-----VPEKLELKKAVFETADAHAPAECYIATNTSTMSPTEIASFTKRPERVIAMHFFNPVHKMKLVELIRGL 156 (288)
T ss_pred CCEEEEe-----ccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcccEEEEecCCCcccCceEEEeCCC
Confidence 7888853 33322 34667777776677766654444433322221111 11111000000
Q ss_pred --ccCCHHHHHHHHHHCCCEEEEEeeeecceehhhhhhh
Q 020710 283 --YLHAEADVERALQKVGWKIRKRGLITTQFYFARLVEA 319 (322)
Q Consensus 283 --~~~~~~~~~~~l~~aGf~vv~~~~~~~~~~f~~~~~~ 319 (322)
.--..+.+..+++..|-+++.+. ....|..++++..
T Consensus 157 ~t~~~~~~~~~~~l~~lg~~~v~v~-d~~Gf~~nRl~~~ 194 (288)
T PRK09260 157 ETSDETVQVAKEVAEQMGKETVVVN-EFPGFVTSRISAL 194 (288)
T ss_pred CCCHHHHHHHHHHHHHcCCeEEEec-CcccHHHHHHHHH
Confidence 00134556778889999988874 4477777777654
|
|
| >PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=93.20 E-value=1.3 Score=45.09 Aligned_cols=164 Identities=18% Similarity=0.113 Sum_probs=91.9
Q ss_pred CeEEEECCCcc--cchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhh----ccCCCC-C----CCCCceEEcccccCCC
Q 020710 150 IAVCDAGCGTG--SLAIPLAKQGAIVSASDISAAMVAEARKKAEEELL----ADNGGE-A----PVMPKFEVKDLESLDG 218 (322)
Q Consensus 150 ~~VLDvGcG~G--~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~----~~~~~~-~----~~~~~~~~~d~~~~~~ 218 (322)
.+|.=||+|+= ..+..++..|.+|+-+|++++.++.+.++....-. ..++.. . ..++.+ ..|+.. -.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~-~~ 391 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRP-TLDYAG-FE 391 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEE-eCCHHH-hc
Confidence 57999999973 34455667799999999999999887766543110 000000 0 000111 123322 24
Q ss_pred CccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEECCChhhHHHHHH-hhc-------cCCCCCC---------ccc
Q 020710 219 KYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKR-VGE-------LFPGPSK---------ATR 281 (322)
Q Consensus 219 ~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~-~~~-------~~~~~~~---------~~~ 281 (322)
.-|+|+=. +.+.+.- ..++++++.+..++..||..+..++....+.. ... .|..+.. ..+
T Consensus 392 ~aDlViEa-v~E~l~~--K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~~g~Hff~P~~~~~lVEvv~g~~ 468 (715)
T PRK11730 392 RVDVVVEA-VVENPKV--KAAVLAEVEQKVREDTILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMPLVEVIRGEK 468 (715)
T ss_pred CCCEEEec-ccCcHHH--HHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCCccEEEEecCCcccccceEEeeCCCC
Confidence 57888732 2222222 35899999998888888877665543322221 110 1111000 000
Q ss_pred cccCCHHHHHHHHHHCCCEEEEEeeeecceehhhhhhh
Q 020710 282 AYLHAEADVERALQKVGWKIRKRGLITTQFYFARLVEA 319 (322)
Q Consensus 282 ~~~~~~~~~~~~l~~aGf~vv~~~~~~~~~~f~~~~~~ 319 (322)
..--+.+.+.+++++.|...+.+ .....|..++++..
T Consensus 469 T~~~~~~~~~~~~~~lgk~pv~v-~d~pGfv~nRi~~~ 505 (715)
T PRK11730 469 TSDETIATVVAYASKMGKTPIVV-NDCPGFFVNRVLFP 505 (715)
T ss_pred CCHHHHHHHHHHHHHhCCceEEe-cCcCchhHHHHHHH
Confidence 00013456677888999998887 46688888877643
|
|
| >KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.13 E-value=0.46 Score=42.27 Aligned_cols=106 Identities=9% Similarity=0.045 Sum_probs=71.5
Q ss_pred CCCCeEEEECCCcccchHHHHhcC--CEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-----CCC
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQG--AIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-----DGK 219 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-----~~~ 219 (322)
..+++||-||.|.|...+...++. -++.-+|++...++..++.++...... .-+.+....+|...+ .++
T Consensus 120 ~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy----~~~~v~l~iGDG~~fl~~~~~~~ 195 (337)
T KOG1562|consen 120 PNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGY----EGKKVKLLIGDGFLFLEDLKENP 195 (337)
T ss_pred CCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhccc----CCCceEEEeccHHHHHHHhccCC
Confidence 467899999999999998888872 358899999999999988887643321 123347778886543 689
Q ss_pred ccEEEEcccccccCcch--HHHHHHHHHhccCCeEEEEE
Q 020710 220 YDTVVCLDVLIHYPQSK--ADGMIAHLASLAEKRLILSF 256 (322)
Q Consensus 220 fD~V~~~~~l~~~~~~~--~~~~l~~l~~~~~~~~il~~ 256 (322)
||+|+.-..=--.|... .+.+++.+.+.+++++++..
T Consensus 196 ~dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~ 234 (337)
T KOG1562|consen 196 FDVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCT 234 (337)
T ss_pred ceEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEE
Confidence 99999633211111111 24556666666777666654
|
|
| >PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2 | Back alignment and domain information |
|---|
Probab=93.13 E-value=0.26 Score=46.02 Aligned_cols=95 Identities=23% Similarity=0.248 Sum_probs=62.5
Q ss_pred CCeEEEECCCcccchHHHHhc--C-CEEEEEeCCHHHHHHHHHHhHHhhhcc-CCCCCCCCCceEEcccccC----CCCc
Q 020710 149 GIAVCDAGCGTGSLAIPLAKQ--G-AIVSASDISAAMVAEARKKAEEELLAD-NGGEAPVMPKFEVKDLESL----DGKY 220 (322)
Q Consensus 149 ~~~VLDvGcG~G~~~~~la~~--~-~~v~gvD~s~~~l~~a~~~~~~~~~~~-~~~~~~~~~~~~~~d~~~~----~~~f 220 (322)
+.+|||.=+|+|.=++.++.. + .+|+.-|+|+++++..++++.-+++.. ++ +....|+..+ ...|
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~-------~v~~~DAn~ll~~~~~~f 122 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERI-------EVSNMDANVLLYSRQERF 122 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCE-------EEEES-HHHHHCHSTT-E
T ss_pred CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceE-------EEehhhHHHHhhhccccC
Confidence 568999999999988888776 3 479999999999999999998877765 33 6777787553 6889
Q ss_pred cEEEEcccccccCcchHHHHHHHHHhccCCeEEEEE
Q 020710 221 DTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSF 256 (322)
Q Consensus 221 D~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~ 256 (322)
|+|=.- -+-.+. .++....+..+.||++.+
T Consensus 123 D~IDlD----PfGSp~--pfldsA~~~v~~gGll~v 152 (377)
T PF02005_consen 123 DVIDLD----PFGSPA--PFLDSALQAVKDGGLLCV 152 (377)
T ss_dssp EEEEE------SS--H--HHHHHHHHHEEEEEEEEE
T ss_pred CEEEeC----CCCCcc--HhHHHHHHHhhcCCEEEE
Confidence 998532 122222 556655554445555543
|
1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: |
| >KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=92.61 E-value=0.57 Score=44.27 Aligned_cols=116 Identities=18% Similarity=0.131 Sum_probs=66.8
Q ss_pred HHHHHHHhhh-cCCCCCCeEEEECCCcccchHHHHhc----CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCC-Cc
Q 020710 134 VENTMQMLND-EGSLKGIAVCDAGCGTGSLAIPLAKQ----GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVM-PK 207 (322)
Q Consensus 134 ~~~~~~~l~~-~~~~~~~~VLDvGcG~G~~~~~la~~----~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~-~~ 207 (322)
+..+...+.. ...-.+..++|+|.|.|.-.-.+... ...++.||.|..|............-.+. .++. ..
T Consensus 185 v~~~~~e~~~~~p~f~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~---~~v~~~~ 261 (491)
T KOG2539|consen 185 VTRSNKEINMRSPKFRPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGE---PIVRKLV 261 (491)
T ss_pred HHHHHHHHhhcCcccChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCc---hhccccc
Confidence 3444444444 22235678999999977755444333 23589999999999988877765111110 1110 12
Q ss_pred eEEcccccC-CCCccEEEEcccccccCcchH-HHHHHHHHh-ccCCeE
Q 020710 208 FEVKDLESL-DGKYDTVVCLDVLIHYPQSKA-DGMIAHLAS-LAEKRL 252 (322)
Q Consensus 208 ~~~~d~~~~-~~~fD~V~~~~~l~~~~~~~~-~~~l~~l~~-~~~~~~ 252 (322)
|...-+... ...||+|+|...++++..... ....+.+.+ ....|+
T Consensus 262 ~~r~~~pi~~~~~yDlvi~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~ 309 (491)
T KOG2539|consen 262 FHRQRLPIDIKNGYDLVICAHKLHELGSKFSRLDVPESLWRKTDRSGY 309 (491)
T ss_pred hhcccCCCCcccceeeEEeeeeeeccCCchhhhhhhHHHHHhccCCCc
Confidence 222222222 466999999999999986553 234444444 344333
|
|
| >KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.49 E-value=1.7 Score=39.10 Aligned_cols=157 Identities=17% Similarity=0.146 Sum_probs=82.7
Q ss_pred CCCeEEEECCCcccchHHHHhcC--C--EEEEEeCCHHHHHHHHHHhHHhh------h--ccCC---C--CCCCCCceEE
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQG--A--IVSASDISAAMVAEARKKAEEEL------L--ADNG---G--EAPVMPKFEV 210 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~~--~--~v~gvD~s~~~l~~a~~~~~~~~------~--~~~~---~--~~~~~~~~~~ 210 (322)
....|+.+|||.-.+...|...+ . .++=||.++........+..... . .+.+ + .+-.+-...-
T Consensus 87 ~~~qivnLGcG~D~l~frL~s~~~~~~~~fievDfp~~~~rKi~ik~~~~~s~~l~~~~~eD~~~~s~~~l~s~~Y~~~g 166 (335)
T KOG2918|consen 87 GKKQIVNLGAGFDTLYFRLLSSGELDRVKFIEVDFPEVVERKISIKRKPELSSILLGLHDEDVVDLSGTDLHSGRYHLIG 166 (335)
T ss_pred CceEEEEcCCCccchhhhhhccCCCCcceEEEecCcHHHHHHHhhcccCchhhhhhccccccccccCcceeccCceeeec
Confidence 46789999999999998888775 2 35556666554444411111100 0 0000 0 0000112223
Q ss_pred cccccC------------CCC-ccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCC--
Q 020710 211 KDLESL------------DGK-YDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPG-- 275 (322)
Q Consensus 211 ~d~~~~------------~~~-fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~-- 275 (322)
.|+-++ +-. .-++++-.+|.++++++-..+++.+.+-.+...++.+.+-.....+.+-+...+..
T Consensus 167 ~DLrdl~ele~kL~~c~~d~~lpTi~iaEcvLvYM~pe~S~~Li~w~~~~F~~a~fv~YEQi~~~D~Fg~vM~~nlk~r~ 246 (335)
T KOG2918|consen 167 CDLRDLNELEEKLKKCGLDTNLPTIFIAECVLVYMEPEESANLIKWAASKFENAHFVNYEQINPNDRFGKVMLANLKRRG 246 (335)
T ss_pred cchhhhHHHHHHHHhccCCcCcceeehhhhhheeccHHHHHHHHHHHHHhCCcccEEEEeccCCCChHHHHHHHHHHhcC
Confidence 333322 111 22333345788998877778888888866666666665422222222222222211
Q ss_pred -CCCccccccCCHHHHHHHHHHCCCEEEEEe
Q 020710 276 -PSKATRAYLHAEADVERALQKVGWKIRKRG 305 (322)
Q Consensus 276 -~~~~~~~~~~~~~~~~~~l~~aGf~vv~~~ 305 (322)
+-.+... +.+.|..++-+.++||+-+...
T Consensus 247 ~~L~gle~-y~s~Esq~~Rf~~~Gw~~v~a~ 276 (335)
T KOG2918|consen 247 CPLHGLET-YNSIESQRSRFLKAGWEYVIAV 276 (335)
T ss_pred CCCchhhh-cccHHHHHHHHHhcCCceeehh
Confidence 1111122 3478888899999999977743
|
|
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=91.78 E-value=0.23 Score=41.18 Aligned_cols=34 Identities=21% Similarity=0.226 Sum_probs=28.3
Q ss_pred CCCCCeEEEECCCcccchHHHHhc---CCEEEEEeCC
Q 020710 146 SLKGIAVCDAGCGTGSLAIPLAKQ---GAIVSASDIS 179 (322)
Q Consensus 146 ~~~~~~VLDvGcG~G~~~~~la~~---~~~v~gvD~s 179 (322)
..++.+|||+||..|.++....++ ...|.|||+-
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDll 103 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLL 103 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeee
Confidence 356889999999999999988777 3459999973
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=91.59 E-value=3.8 Score=39.18 Aligned_cols=78 Identities=17% Similarity=0.103 Sum_probs=50.7
Q ss_pred HHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHH----hcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCce
Q 020710 133 TVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLA----KQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKF 208 (322)
Q Consensus 133 ~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la----~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~ 208 (322)
.+..+...+... .....+|+=+||| .++..++ +.|..|+.+|.+++.++..++.... ..+
T Consensus 216 ~l~~~~~~~~~~-~~~~~~iiIiG~G--~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~-------------~~~ 279 (453)
T PRK09496 216 HIRAVMSEFGRL-EKPVKRVMIVGGG--NIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPN-------------TLV 279 (453)
T ss_pred HHHHHHHHhCcc-CCCCCEEEEECCC--HHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCC-------------CeE
Confidence 345555555433 2346789998885 4444444 3488999999999988877654311 167
Q ss_pred EEcccccC-------CCCccEEEEc
Q 020710 209 EVKDLESL-------DGKYDTVVCL 226 (322)
Q Consensus 209 ~~~d~~~~-------~~~fD~V~~~ 226 (322)
+.+|..+. -..+|.|++.
T Consensus 280 i~gd~~~~~~L~~~~~~~a~~vi~~ 304 (453)
T PRK09496 280 LHGDGTDQELLEEEGIDEADAFIAL 304 (453)
T ss_pred EECCCCCHHHHHhcCCccCCEEEEC
Confidence 78887654 3578888764
|
|
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.39 E-value=2.5 Score=38.74 Aligned_cols=43 Identities=33% Similarity=0.493 Sum_probs=32.2
Q ss_pred CCCCeEEEECCC-cccchHHHHhc-CC-EEEEEeCCHHHHHHHHHH
Q 020710 147 LKGIAVCDAGCG-TGSLAIPLAKQ-GA-IVSASDISAAMVAEARKK 189 (322)
Q Consensus 147 ~~~~~VLDvGcG-~G~~~~~la~~-~~-~v~gvD~s~~~l~~a~~~ 189 (322)
.++.+||=.||| .|..+..+++. |+ +|+++|.+++.++.+++.
T Consensus 168 ~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~l 213 (343)
T PRK09880 168 LQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREM 213 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHc
Confidence 357889989886 45555666665 77 699999999988887653
|
|
| >COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=91.25 E-value=0.88 Score=41.84 Aligned_cols=87 Identities=23% Similarity=0.203 Sum_probs=60.0
Q ss_pred CCeEEEECCCcccchHHHHhc-CC-EEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC----CCCccE
Q 020710 149 GIAVCDAGCGTGSLAIPLAKQ-GA-IVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL----DGKYDT 222 (322)
Q Consensus 149 ~~~VLDvGcG~G~~~~~la~~-~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~~fD~ 222 (322)
..+|||.=||+|.=++.++.. +. +|+.-|+||++++.++++...+...+ ...+..|+..+ ...||+
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~--------~~v~n~DAN~lm~~~~~~fd~ 124 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGED--------AEVINKDANALLHELHRAFDV 124 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCccc--------ceeecchHHHHHHhcCCCccE
Confidence 678999999999988888776 55 79999999999999999998763222 14444676544 478998
Q ss_pred EEEcccccccCcchHHHHHHHHH
Q 020710 223 VVCLDVLIHYPQSKADGMIAHLA 245 (322)
Q Consensus 223 V~~~~~l~~~~~~~~~~~l~~l~ 245 (322)
|=.-- + --|-|-++..++.++
T Consensus 125 IDiDP-F-GSPaPFlDaA~~s~~ 145 (380)
T COG1867 125 IDIDP-F-GSPAPFLDAALRSVR 145 (380)
T ss_pred EecCC-C-CCCchHHHHHHHHhh
Confidence 84321 1 112233455555544
|
|
| >KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=91.16 E-value=0.44 Score=45.71 Aligned_cols=97 Identities=12% Similarity=0.117 Sum_probs=71.2
Q ss_pred CCeEEEECCCcccchHHHHhc------CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--C-CC
Q 020710 149 GIAVCDAGCGTGSLAIPLAKQ------GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL--D-GK 219 (322)
Q Consensus 149 ~~~VLDvGcG~G~~~~~la~~------~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~-~~ 219 (322)
...|+-+|.|-|-+.....+. ..++++|+-+|.++-..+. ..-..+.+++ +.+..|+.+. + .+
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~-~n~~~W~~~V-------tii~~DMR~w~ap~eq 439 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQN-RNFECWDNRV-------TIISSDMRKWNAPREQ 439 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhh-hchhhhcCee-------EEEeccccccCCchhh
Confidence 456889999999987665443 4579999999999988766 3444566655 8899998876 2 67
Q ss_pred ccEEEEcccccccCcchH-HHHHHHHHhccCCeEEE
Q 020710 220 YDTVVCLDVLIHYPQSKA-DGMIAHLASLAEKRLIL 254 (322)
Q Consensus 220 fD~V~~~~~l~~~~~~~~-~~~l~~l~~~~~~~~il 254 (322)
.|+++ ++.|..+.|.++ .++|.-+.+.+++.+|.
T Consensus 440 ~DI~V-SELLGSFGDNELSPECLDG~q~fLkpdgIs 474 (649)
T KOG0822|consen 440 ADIIV-SELLGSFGDNELSPECLDGAQKFLKPDGIS 474 (649)
T ss_pred ccchH-HHhhccccCccCCHHHHHHHHhhcCCCceE
Confidence 88776 455666766665 67888888877766655
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=91.11 E-value=0.78 Score=43.87 Aligned_cols=119 Identities=13% Similarity=0.162 Sum_probs=74.1
Q ss_pred CCeEEEECCCcccchHHHHhcCCEEEEEeCC----HHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccc----cCCCCc
Q 020710 149 GIAVCDAGCGTGSLAIPLAKQGAIVSASDIS----AAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLE----SLDGKY 220 (322)
Q Consensus 149 ~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s----~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~----~~~~~f 220 (322)
-..|+|...|.|.|+..|.+.. |+.+-.- +.-+... -+.|+.. .-.|.. ..+.+|
T Consensus 366 iRNVMDMnAg~GGFAAAL~~~~--VWVMNVVP~~~~ntL~vI----ydRGLIG-----------~yhDWCE~fsTYPRTY 428 (506)
T PF03141_consen 366 IRNVMDMNAGYGGFAAALIDDP--VWVMNVVPVSGPNTLPVI----YDRGLIG-----------VYHDWCEAFSTYPRTY 428 (506)
T ss_pred eeeeeeecccccHHHHHhccCC--ceEEEecccCCCCcchhh----hhcccch-----------hccchhhccCCCCcch
Confidence 4579999999999999998775 3332222 2222221 1222221 112322 238899
Q ss_pred cEEEEcccccccCcc-hHHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCCCCCccccccCCHHHHHHHHHHCCC
Q 020710 221 DTVVCLDVLIHYPQS-KADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQKVGW 299 (322)
Q Consensus 221 D~V~~~~~l~~~~~~-~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf 299 (322)
|+|-...++.++.+. .+..++-++-|++.++|.+++-...- -.+++++++.+-.|
T Consensus 429 DLlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD~~~------------------------vl~~v~~i~~~lrW 484 (506)
T PF03141_consen 429 DLLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRDTVD------------------------VLEKVKKIAKSLRW 484 (506)
T ss_pred hheehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEeccHH------------------------HHHHHHHHHHhCcc
Confidence 999999998887642 25778889999998888777633221 13466667777777
Q ss_pred EEEEEeeee
Q 020710 300 KIRKRGLIT 308 (322)
Q Consensus 300 ~vv~~~~~~ 308 (322)
++...+...
T Consensus 485 ~~~~~d~e~ 493 (506)
T PF03141_consen 485 EVRIHDTED 493 (506)
T ss_pred eEEEEecCC
Confidence 765554443
|
; GO: 0008168 methyltransferase activity |
| >TIGR02437 FadB fatty oxidation complex, alpha subunit FadB | Back alignment and domain information |
|---|
Probab=90.62 E-value=5 Score=40.97 Aligned_cols=165 Identities=18% Similarity=0.099 Sum_probs=92.9
Q ss_pred CCeEEEECCCccc--chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhh----ccCCCC---C--CCCCceEEcccccCC
Q 020710 149 GIAVCDAGCGTGS--LAIPLAKQGAIVSASDISAAMVAEARKKAEEELL----ADNGGE---A--PVMPKFEVKDLESLD 217 (322)
Q Consensus 149 ~~~VLDvGcG~G~--~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~----~~~~~~---~--~~~~~~~~~d~~~~~ 217 (322)
-.+|.=||+|+=. .+..++..|.+|+-+|.+++.++.+.++....-. ..++.. . ..++++ ..|+.. -
T Consensus 313 i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~-~ 390 (714)
T TIGR02437 313 VKQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITP-TLSYAG-F 390 (714)
T ss_pred cceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEE-eCCHHH-h
Confidence 3579999999543 3445566799999999999999888766543210 000000 0 000011 122222 2
Q ss_pred CCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEECCChhhHHHHHHh--------hccCCCCCC------ccccc
Q 020710 218 GKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRV--------GELFPGPSK------ATRAY 283 (322)
Q Consensus 218 ~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~--------~~~~~~~~~------~~~~~ 283 (322)
...|+|+=. +.+.+.- ..++++++-++.++..|+..+..++....+... +-.|..+.. ...+.
T Consensus 391 ~~aDlViEa-v~E~l~~--K~~vf~~l~~~~~~~~ilasnTS~l~i~~ia~~~~~p~r~ig~Hff~P~~~~~lvEvv~g~ 467 (714)
T TIGR02437 391 DNVDIVVEA-VVENPKV--KAAVLAEVEQHVREDAILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMPLVEVIRGE 467 (714)
T ss_pred cCCCEEEEc-CcccHHH--HHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEecCCCcccCceEeecCCC
Confidence 457888733 2333333 358999999988888888776655443322211 111110000 00000
Q ss_pred ---cCCHHHHHHHHHHCCCEEEEEeeeecceehhhhhhh
Q 020710 284 ---LHAEADVERALQKVGWKIRKRGLITTQFYFARLVEA 319 (322)
Q Consensus 284 ---~~~~~~~~~~l~~aGf~vv~~~~~~~~~~f~~~~~~ 319 (322)
-.+.+...+++++.|...+.+. ....|..++++..
T Consensus 468 ~Ts~~~~~~~~~~~~~lgk~pv~v~-d~pGfi~NRl~~~ 505 (714)
T TIGR02437 468 KSSDETIATVVAYASKMGKTPIVVN-DCPGFFVNRVLFP 505 (714)
T ss_pred CCCHHHHHHHHHHHHHcCCEEEEeC-CcccchHHHHHHH
Confidence 0134556678889999988875 6688888887654
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399. |
| >PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=90.58 E-value=3.7 Score=41.89 Aligned_cols=165 Identities=17% Similarity=0.093 Sum_probs=89.8
Q ss_pred CCeEEEECCCc--ccchHHHH-hcCCEEEEEeCCHHHHHHHHHHhHHhhh----ccCCCC-----CCCCCceEEcccccC
Q 020710 149 GIAVCDAGCGT--GSLAIPLA-KQGAIVSASDISAAMVAEARKKAEEELL----ADNGGE-----APVMPKFEVKDLESL 216 (322)
Q Consensus 149 ~~~VLDvGcG~--G~~~~~la-~~~~~v~gvD~s~~~l~~a~~~~~~~~~----~~~~~~-----~~~~~~~~~~d~~~~ 216 (322)
-.+|.=||+|+ ...+..++ ..|..|+..|.+++.++.+.++..+.-. ..++.. ...++.+ ..|+..
T Consensus 309 i~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~- 386 (708)
T PRK11154 309 VNKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISG-TTDYRG- 386 (708)
T ss_pred ccEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEE-eCChHH-
Confidence 36799999997 33444455 5599999999999999888766543210 000000 0000111 122222
Q ss_pred CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEECCChhhHHHHHH-hh-------ccC-CCCCC--------c
Q 020710 217 DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKR-VG-------ELF-PGPSK--------A 279 (322)
Q Consensus 217 ~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~-~~-------~~~-~~~~~--------~ 279 (322)
-...|+|+=. +.+.+.- ..++++++.+..++..|+..+..++....+.. .. -.| .+... .
T Consensus 387 ~~~aDlViEa-v~E~~~~--K~~v~~~le~~~~~~~ilasnTS~l~i~~la~~~~~p~r~ig~Hff~P~~~~~lVEvv~g 463 (708)
T PRK11154 387 FKHADVVIEA-VFEDLAL--KQQMVAEVEQNCAPHTIFASNTSSLPIGQIAAAAARPEQVIGLHYFSPVEKMPLVEVIPH 463 (708)
T ss_pred hccCCEEeec-ccccHHH--HHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhcCcccceEEEecCCccccCceEEEECC
Confidence 2457888732 2233322 35899999988888888876655543332221 11 011 10000 0
Q ss_pred cccccCCHHHHHHHHHHCCCEEEEEeeeecceehhhhhhh
Q 020710 280 TRAYLHAEADVERALQKVGWKIRKRGLITTQFYFARLVEA 319 (322)
Q Consensus 280 ~~~~~~~~~~~~~~l~~aGf~vv~~~~~~~~~~f~~~~~~ 319 (322)
....--..+.+.+++.+.|...+.+ .....|..++++..
T Consensus 464 ~~Ts~~~~~~~~~~~~~~gk~pv~v-~d~pGfi~nRl~~~ 502 (708)
T PRK11154 464 AKTSAETIATTVALAKKQGKTPIVV-RDGAGFYVNRILAP 502 (708)
T ss_pred CCCCHHHHHHHHHHHHHcCCceEEE-eccCcHHHHHHHHH
Confidence 0000013455667888899988876 34577777777654
|
|
| >PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=90.56 E-value=8.9 Score=34.73 Aligned_cols=162 Identities=20% Similarity=0.139 Sum_probs=82.0
Q ss_pred CeEEEECCCc-c-cchHHHHhcCCEEEEEeCCHHHHHHHHHHhHH-------hhhccCCC--CCCCCCceEEcccccCCC
Q 020710 150 IAVCDAGCGT-G-SLAIPLAKQGAIVSASDISAAMVAEARKKAEE-------ELLADNGG--EAPVMPKFEVKDLESLDG 218 (322)
Q Consensus 150 ~~VLDvGcG~-G-~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~-------~~~~~~~~--~~~~~~~~~~~d~~~~~~ 218 (322)
.+|.=||+|. | .++..+++.|.+|++.|.+++.++.++++... .+...... ....++ -...|+.+.-.
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i-~~~~~~~~a~~ 81 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARI-RVTDSLADAVA 81 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCe-EEECcHHHhhC
Confidence 3688889883 2 34556677799999999999888877654321 11100000 000000 12234333234
Q ss_pred CccEEEEcccccccCcc--hHHHHHHHHHhccCCeEEEEECCChhhH-HHHHHhhc---cC-CCCCCccc----------
Q 020710 219 KYDTVVCLDVLIHYPQS--KADGMIAHLASLAEKRLILSFAPKTFYY-DLLKRVGE---LF-PGPSKATR---------- 281 (322)
Q Consensus 219 ~fD~V~~~~~l~~~~~~--~~~~~l~~l~~~~~~~~il~~~~~~~~~-~~~~~~~~---~~-~~~~~~~~---------- 281 (322)
..|+|+.+ ++++ ....+++.+....++..++..+...... .+...... .+ ..+....+
T Consensus 82 ~ad~Vi~a-----vpe~~~~k~~~~~~l~~~~~~~~ii~ssts~~~~~~la~~~~~~~~~~~~hp~~p~~~~~lveiv~~ 156 (308)
T PRK06129 82 DADYVQES-----APENLELKRALFAELDALAPPHAILASSTSALLASAFTEHLAGRERCLVAHPINPPYLIPVVEVVPA 156 (308)
T ss_pred CCCEEEEC-----CcCCHHHHHHHHHHHHHhCCCcceEEEeCCCCCHHHHHHhcCCcccEEEEecCCCcccCceEEEeCC
Confidence 57888753 3432 2456777777766666666443332221 12222111 11 01111110
Q ss_pred --cccCCHHHHHHHHHHCCCEEEEEeeeecceehhhhh
Q 020710 282 --AYLHAEADVERALQKVGWKIRKRGLITTQFYFARLV 317 (322)
Q Consensus 282 --~~~~~~~~~~~~l~~aGf~vv~~~~~~~~~~f~~~~ 317 (322)
..--..+.+..+++..|-+++.+......|..++++
T Consensus 157 ~~t~~~~~~~~~~~~~~lG~~~v~v~~~~~G~i~nrl~ 194 (308)
T PRK06129 157 PWTAPATLARAEALYRAAGQSPVRLRREIDGFVLNRLQ 194 (308)
T ss_pred CCCCHHHHHHHHHHHHHcCCEEEEecCCCccHHHHHHH
Confidence 000134456678889999998876555555555543
|
|
| >COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=90.27 E-value=0.97 Score=43.88 Aligned_cols=85 Identities=19% Similarity=0.306 Sum_probs=56.0
Q ss_pred HHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc----C--CEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCce
Q 020710 135 ENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ----G--AIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKF 208 (322)
Q Consensus 135 ~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~----~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~ 208 (322)
+-+.+++... +..+|+|..||+|.+.....+. . ..++|.|+++.....++-+.--++.... +..
T Consensus 176 ~liv~~l~~~---~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~-------~~i 245 (489)
T COG0286 176 ELIVELLDPE---PRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGD-------ANI 245 (489)
T ss_pred HHHHHHcCCC---CCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCcc-------ccc
Confidence 3444444432 4569999999999988776554 1 5689999999999999988876665420 122
Q ss_pred EEccc-cc-------CCCCccEEEEcccc
Q 020710 209 EVKDL-ES-------LDGKYDTVVCLDVL 229 (322)
Q Consensus 209 ~~~d~-~~-------~~~~fD~V~~~~~l 229 (322)
..+|- .. ..+.||.|+++.-+
T Consensus 246 ~~~dtl~~~~~~~~~~~~~~D~viaNPPf 274 (489)
T COG0286 246 RHGDTLSNPKHDDKDDKGKFDFVIANPPF 274 (489)
T ss_pred cccccccCCcccccCCccceeEEEeCCCC
Confidence 33321 11 13679998886543
|
|
| >PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length | Back alignment and domain information |
|---|
Probab=90.17 E-value=6.1 Score=33.70 Aligned_cols=107 Identities=17% Similarity=0.129 Sum_probs=65.9
Q ss_pred HHHHHHhhhcCCCCCCeEEEECCCccc--chHHHHhc----CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCce
Q 020710 135 ENTMQMLNDEGSLKGIAVCDAGCGTGS--LAIPLAKQ----GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKF 208 (322)
Q Consensus 135 ~~~~~~l~~~~~~~~~~VLDvGcG~G~--~~~~la~~----~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~ 208 (322)
.+++..|... .+-..|+++.|+.|. .+..|+-. |.++++|-..+.-+...++.+.+.+..+.. +|
T Consensus 30 aEfISAlAAG--~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~v-------Ef 100 (218)
T PF07279_consen 30 AEFISALAAG--WNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVV-------EF 100 (218)
T ss_pred HHHHHHHhcc--ccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccc-------eE
Confidence 5566666543 345689999777543 34444422 889999999988888888888777665433 88
Q ss_pred EEccccc-C---CCCccEEEEcccccccCcchHH-HHHHHHHhccCCeEEEEE
Q 020710 209 EVKDLES-L---DGKYDTVVCLDVLIHYPQSKAD-GMIAHLASLAEKRLILSF 256 (322)
Q Consensus 209 ~~~d~~~-~---~~~fD~V~~~~~l~~~~~~~~~-~~l~~l~~~~~~~~il~~ 256 (322)
+.++..+ . -...|+++.-. ..++.. ++|+.+. +.+.|.++.+
T Consensus 101 vvg~~~e~~~~~~~~iDF~vVDc-----~~~d~~~~vl~~~~-~~~~GaVVV~ 147 (218)
T PF07279_consen 101 VVGEAPEEVMPGLKGIDFVVVDC-----KREDFAARVLRAAK-LSPRGAVVVC 147 (218)
T ss_pred EecCCHHHHHhhccCCCEEEEeC-----CchhHHHHHHHHhc-cCCCceEEEE
Confidence 8888543 2 35688887532 122233 5555433 3344555543
|
The function of this family is unknown. |
| >PLN02545 3-hydroxybutyryl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=90.06 E-value=10 Score=34.04 Aligned_cols=162 Identities=14% Similarity=0.081 Sum_probs=80.6
Q ss_pred CeEEEECCCc--ccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHH-------hhhccCCCC-CCCCCceEEcccccCCCC
Q 020710 150 IAVCDAGCGT--GSLAIPLAKQGAIVSASDISAAMVAEARKKAEE-------ELLADNGGE-APVMPKFEVKDLESLDGK 219 (322)
Q Consensus 150 ~~VLDvGcG~--G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~-------~~~~~~~~~-~~~~~~~~~~d~~~~~~~ 219 (322)
.+|.=||+|. ..++..++..|.+|+..|.+++.++.++++..+ .+....... ......-...+.+. -..
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~ 83 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNLEE-LRD 83 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCHHH-hCC
Confidence 5688899983 334555666799999999999998876654431 110000000 00000011122222 244
Q ss_pred ccEEEEcccccccCc--chHHHHHHHHHhccCCeEEEEECCChhhHHHHHHh--------hccCC-CCCCc--c------
Q 020710 220 YDTVVCLDVLIHYPQ--SKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRV--------GELFP-GPSKA--T------ 280 (322)
Q Consensus 220 fD~V~~~~~l~~~~~--~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~--------~~~~~-~~~~~--~------ 280 (322)
-|+|+. .+++ .....+++++....+++.++..+..+.....+... +-.+. .+... .
T Consensus 84 aD~Vie-----av~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~~~~l~~~~~~~~r~~g~h~~~pp~~~~lveiv~g~ 158 (295)
T PLN02545 84 ADFIIE-----AIVESEDLKKKLFSELDRICKPSAILASNTSSISITRLASATQRPQQVIGMHFMNPPPIMKLVEIIRGA 158 (295)
T ss_pred CCEEEE-----cCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCcceEEEeccCCcccCceEEEeCCC
Confidence 688884 4442 22356788887766666555433333222222111 11111 11000 0
Q ss_pred ccccCCHHHHHHHHHHCCCEEEEEeeeecceehhhhhh
Q 020710 281 RAYLHAEADVERALQKVGWKIRKRGLITTQFYFARLVE 318 (322)
Q Consensus 281 ~~~~~~~~~~~~~l~~aGf~vv~~~~~~~~~~f~~~~~ 318 (322)
...-...+.+..+++..|..++.+. ....|..++++.
T Consensus 159 ~t~~e~~~~~~~ll~~lG~~~~~~~-d~~g~i~nri~~ 195 (295)
T PLN02545 159 DTSDEVFDATKALAERFGKTVVCSQ-DYPGFIVNRILM 195 (295)
T ss_pred CCCHHHHHHHHHHHHHcCCeeEEec-CcccHHHHHHHH
Confidence 0000134567788999999887653 335566666553
|
|
| >TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial | Back alignment and domain information |
|---|
Probab=89.94 E-value=3.6 Score=42.11 Aligned_cols=164 Identities=12% Similarity=0.020 Sum_probs=91.2
Q ss_pred CeEEEECCCccc--chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhc----cCCC---C--CCCCCceEEcccccCCC
Q 020710 150 IAVCDAGCGTGS--LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLA----DNGG---E--APVMPKFEVKDLESLDG 218 (322)
Q Consensus 150 ~~VLDvGcG~G~--~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~----~~~~---~--~~~~~~~~~~d~~~~~~ 218 (322)
.+|-=||+|+=. .+..++..|.+|+.+|.+++.++.+.++..+.-.. .++. . ...++.+ ..|+.. -.
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~-~~ 413 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTP-TLDYSG-FK 413 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCCHHH-hc
Confidence 579999998633 34455667999999999999999887766432110 0000 0 0000111 122222 24
Q ss_pred CccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEECCChhhHHHHHH-hh-------ccC-CCCCC-----cccccc
Q 020710 219 KYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKR-VG-------ELF-PGPSK-----ATRAYL 284 (322)
Q Consensus 219 ~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~-~~-------~~~-~~~~~-----~~~~~~ 284 (322)
..|+|+=. +.+.+.- ..++++++.+..+++.|+..+..++....+.. .. -.| .+... ...+..
T Consensus 414 ~aDlViEA-v~E~l~~--K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~ig~Hff~P~~~m~LvEvv~g~~ 490 (737)
T TIGR02441 414 NADMVIEA-VFEDLSL--KHKVIKEVEAVVPPHCIIASNTSALPIKDIAAVSSRPEKVIGMHYFSPVDKMQLLEIITHDG 490 (737)
T ss_pred cCCeehhh-ccccHHH--HHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCccceEEEeccCCcccCceEEEeCCCC
Confidence 56777722 2233322 35899999998888888877665544332221 11 111 11000 000000
Q ss_pred C---CHHHHHHHHHHCCCEEEEEeeeecceehhhhhhh
Q 020710 285 H---AEADVERALQKVGWKIRKRGLITTQFYFARLVEA 319 (322)
Q Consensus 285 ~---~~~~~~~~l~~aGf~vv~~~~~~~~~~f~~~~~~ 319 (322)
- ..+....++++.|...+.+ .....|..++++..
T Consensus 491 Ts~~~~~~~~~~~~~lgk~pv~v-~d~pGFi~NRi~~~ 527 (737)
T TIGR02441 491 TSKDTLASAVAVGLKQGKVVIVV-KDGPGFYTTRCLGP 527 (737)
T ss_pred CCHHHHHHHHHHHHHCCCeEEEE-CCcCCchHHHHHHH
Confidence 1 3444567888889998887 45688888887654
|
Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16). |
| >PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=89.70 E-value=6.7 Score=35.17 Aligned_cols=163 Identities=15% Similarity=0.180 Sum_probs=84.1
Q ss_pred CeEEEECCCc--ccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhh--ccCCCCCCC-----CCce-EEcccccCCCC
Q 020710 150 IAVCDAGCGT--GSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELL--ADNGGEAPV-----MPKF-EVKDLESLDGK 219 (322)
Q Consensus 150 ~~VLDvGcG~--G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~--~~~~~~~~~-----~~~~-~~~d~~~~~~~ 219 (322)
.+|-=||+|+ +.++..++..|.+|+..|.+++.++.+++++.+.-. ..+-..... .-.. ...|++. -..
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~-~~~ 84 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDLGD-FAD 84 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCHHH-hCC
Confidence 4788899984 344555667799999999999999987766543210 000000000 0001 2333332 245
Q ss_pred ccEEEEcccccccCcc-h-HHHHHHHHHhcc-CCeEEEEECCChhhHHHHHHh--------h-ccCCCCCCc-----ccc
Q 020710 220 YDTVVCLDVLIHYPQS-K-ADGMIAHLASLA-EKRLILSFAPKTFYYDLLKRV--------G-ELFPGPSKA-----TRA 282 (322)
Q Consensus 220 fD~V~~~~~l~~~~~~-~-~~~~l~~l~~~~-~~~~il~~~~~~~~~~~~~~~--------~-~~~~~~~~~-----~~~ 282 (322)
.|+|+- -++++ + ...++..+.+.. +++.++..+........+... + .++.+.... ...
T Consensus 85 ~d~ViE-----av~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~~la~~~~~~~r~~g~hf~~P~~~~~lvElv~~ 159 (286)
T PRK07819 85 RQLVIE-----AVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIMKLAAATKRPGRVLGLHFFNPVPVLPLVELVPT 159 (286)
T ss_pred CCEEEE-----ecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCccEEEEecCCCcccCceEEEeCC
Confidence 688884 44432 2 346788888876 667766554443322222111 0 111100000 000
Q ss_pred ccC---CHHHHHHHHHH-CCCEEEEEeeeecceehhhhhhh
Q 020710 283 YLH---AEADVERALQK-VGWKIRKRGLITTQFYFARLVEA 319 (322)
Q Consensus 283 ~~~---~~~~~~~~l~~-aGf~vv~~~~~~~~~~f~~~~~~ 319 (322)
..- ..+.+..++.+ .|..++.+ .....|..++++..
T Consensus 160 ~~T~~~~~~~~~~~~~~~lgk~pv~v-~d~pGfi~nRi~~~ 199 (286)
T PRK07819 160 LVTSEATVARAEEFASDVLGKQVVRA-QDRSGFVVNALLVP 199 (286)
T ss_pred CCCCHHHHHHHHHHHHHhCCCCceEe-cCCCChHHHHHHHH
Confidence 001 33444566674 78888776 44567777776643
|
|
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.28 E-value=1.1 Score=42.79 Aligned_cols=118 Identities=19% Similarity=0.177 Sum_probs=72.7
Q ss_pred CCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC---------
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL--------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--------- 216 (322)
.+..+|-||-|.|.+...+... ..++++|++.|.|++.+++.+.-..-. |. +....|..+.
T Consensus 295 ~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~~-r~-------~V~i~dGl~~~~~~~k~~~ 366 (482)
T KOG2352|consen 295 TGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQSD-RN-------KVHIADGLDFLQRTAKSQQ 366 (482)
T ss_pred ccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhhh-hh-------hhhHhhchHHHHHHhhccc
Confidence 4567899999999998877655 468999999999999999887532221 11 3333332211
Q ss_pred -CCCccEEEE----ccccccc---Ccch-HHHHHHHHHhccCCeEEEEEC----CChhhHHHHHHhhccCC
Q 020710 217 -DGKYDTVVC----LDVLIHY---PQSK-ADGMIAHLASLAEKRLILSFA----PKTFYYDLLKRVGELFP 274 (322)
Q Consensus 217 -~~~fD~V~~----~~~l~~~---~~~~-~~~~l~~l~~~~~~~~il~~~----~~~~~~~~~~~~~~~~~ 274 (322)
+..||++.. .. .|-+ |... ...++..++..+++.++++++ ..++.......+...|+
T Consensus 367 ~~~~~dvl~~dvds~d-~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r~~~~~~~~~~~l~~vf~ 436 (482)
T KOG2352|consen 367 EDICPDVLMVDVDSKD-SHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTRNSSFKDEVLMNLAKVFP 436 (482)
T ss_pred cccCCcEEEEECCCCC-cccCcCCchHHHHHHHHHHHhhccCccceEEEEEecCCcchhHHHHHhhhhhhH
Confidence 467888875 12 2222 2222 356788888877776665542 23344445555555543
|
|
| >PRK06139 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.58 E-value=3.5 Score=37.81 Aligned_cols=73 Identities=16% Similarity=0.141 Sum_probs=49.7
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
++++||=.|++.|. ++..|+++|++|+.++-+++.++...+.+...+... .++..|+.+.
T Consensus 6 ~~k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g~~~---------~~~~~Dv~d~~~v~~~~~ 76 (330)
T PRK06139 6 HGAVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALGAEV---------LVVPTDVTDADQVKALAT 76 (330)
T ss_pred CCCEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcE---------EEEEeeCCCHHHHHHHHH
Confidence 45788888875544 234455669999999999888776666555433221 5667787653
Q ss_pred -----CCCccEEEEcccc
Q 020710 217 -----DGKYDTVVCLDVL 229 (322)
Q Consensus 217 -----~~~fD~V~~~~~l 229 (322)
.+..|+++.+..+
T Consensus 77 ~~~~~~g~iD~lVnnAG~ 94 (330)
T PRK06139 77 QAASFGGRIDVWVNNVGV 94 (330)
T ss_pred HHHHhcCCCCEEEECCCc
Confidence 2679999987654
|
|
| >PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine | Back alignment and domain information |
|---|
Probab=88.35 E-value=1.6 Score=40.17 Aligned_cols=79 Identities=14% Similarity=0.064 Sum_probs=41.9
Q ss_pred CCCCeEEEECCCcccchHHHHhc------------C------CEEEEEeCCHHHHHHHHHHhHHh----hhccCCCCCCC
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQ------------G------AIVSASDISAAMVAEARKKAEEE----LLADNGGEAPV 204 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~------------~------~~v~gvD~s~~~l~~a~~~~~~~----~~~~~~~~~~~ 204 (322)
....+|+|+||..|.++..+... + .+|+.-|+-.+=....=+.+... .... .
T Consensus 15 ~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~-~----- 88 (334)
T PF03492_consen 15 PKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFR-N----- 88 (334)
T ss_dssp TTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTT-S-----
T ss_pred CCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCc-e-----
Confidence 45679999999999999877542 2 47888886443332222212111 0011 0
Q ss_pred CCceEE---ccccc-C--CCCccEEEEcccccccC
Q 020710 205 MPKFEV---KDLES-L--DGKYDTVVCLDVLIHYP 233 (322)
Q Consensus 205 ~~~~~~---~d~~~-~--~~~fD~V~~~~~l~~~~ 233 (322)
-|.. +.+-. + +++.|+++++.+|||+.
T Consensus 89 --~f~~gvpgSFy~rLfP~~Svh~~~Ss~alHWLS 121 (334)
T PF03492_consen 89 --YFVSGVPGSFYGRLFPSNSVHFGHSSYALHWLS 121 (334)
T ss_dssp --EEEEEEES-TTS--S-TT-EEEEEEES-TTB-S
T ss_pred --EEEEecCchhhhccCCCCceEEEEEechhhhcc
Confidence 2333 23322 1 79999999999999876
|
Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B. |
| >PRK06124 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.30 E-value=4.3 Score=35.21 Aligned_cols=73 Identities=23% Similarity=0.147 Sum_probs=48.1
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
+++++|-.|++.|. +...|+++|++|+.++-+++.++...+.+...+.. +.++.+|+.+.
T Consensus 10 ~~k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~---------~~~~~~Dl~~~~~~~~~~~ 80 (256)
T PRK06124 10 AGQVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAGGA---------AEALAFDIADEEAVAAAFA 80 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcCCc---------eEEEEccCCCHHHHHHHHH
Confidence 46788988865443 23334556999999999987766655554433221 16778887654
Q ss_pred -----CCCccEEEEcccc
Q 020710 217 -----DGKYDTVVCLDVL 229 (322)
Q Consensus 217 -----~~~fD~V~~~~~l 229 (322)
-++.|.|+.+...
T Consensus 81 ~~~~~~~~id~vi~~ag~ 98 (256)
T PRK06124 81 RIDAEHGRLDILVNNVGA 98 (256)
T ss_pred HHHHhcCCCCEEEECCCC
Confidence 2578999987664
|
|
| >PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function | Back alignment and domain information |
|---|
Probab=88.25 E-value=0.8 Score=35.62 Aligned_cols=71 Identities=20% Similarity=0.266 Sum_probs=45.0
Q ss_pred ceEEcccccC----CCCccEEEEcccccccCcchH--HHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCCCCCcc
Q 020710 207 KFEVKDLESL----DGKYDTVVCLDVLIHYPQSKA--DGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKAT 280 (322)
Q Consensus 207 ~~~~~d~~~~----~~~fD~V~~~~~l~~~~~~~~--~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (322)
++..+|+.+. +..||+|+.-.. .--.++++ .++++.|++++++++++..-.
T Consensus 34 ~L~~gDa~~~l~~l~~~~Da~ylDgF-sP~~nPelWs~e~~~~l~~~~~~~~~l~Tys---------------------- 90 (124)
T PF05430_consen 34 TLWFGDAREMLPQLDARFDAWYLDGF-SPAKNPELWSEELFKKLARLSKPGGTLATYS---------------------- 90 (124)
T ss_dssp EEEES-HHHHHHHB-T-EEEEEE-SS--TTTSGGGSSHHHHHHHHHHEEEEEEEEES-----------------------
T ss_pred EEEEcHHHHHHHhCcccCCEEEecCC-CCcCCcccCCHHHHHHHHHHhCCCcEEEEee----------------------
Confidence 6667776543 688999997542 11112332 689999999988887775411
Q ss_pred ccccCCHHHHHHHHHHCCCEEEEEe
Q 020710 281 RAYLHAEADVERALQKVGWKIRKRG 305 (322)
Q Consensus 281 ~~~~~~~~~~~~~l~~aGf~vv~~~ 305 (322)
....+++.|.++||+|.+..
T Consensus 91 -----~a~~Vr~~L~~aGF~v~~~~ 110 (124)
T PF05430_consen 91 -----SAGAVRRALQQAGFEVEKVP 110 (124)
T ss_dssp ------BHHHHHHHHHCTEEEEEEE
T ss_pred -----chHHHHHHHHHcCCEEEEcC
Confidence 12468899999999997654
|
; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A. |
| >KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=88.05 E-value=3.4 Score=37.51 Aligned_cols=45 Identities=38% Similarity=0.406 Sum_probs=35.7
Q ss_pred cCCCCCCeEEEECCCc-ccchHHHHhc-CC-EEEEEeCCHHHHHHHHH
Q 020710 144 EGSLKGIAVCDAGCGT-GSLAIPLAKQ-GA-IVSASDISAAMVAEARK 188 (322)
Q Consensus 144 ~~~~~~~~VLDvGcG~-G~~~~~la~~-~~-~v~gvD~s~~~l~~a~~ 188 (322)
.+...+.+||-+|+|. |..+...++. |+ +|+.+|+++..++.|++
T Consensus 165 ~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~ 212 (354)
T KOG0024|consen 165 AGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK 212 (354)
T ss_pred cCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH
Confidence 3346789999999995 5555555555 65 69999999999999988
|
|
| >PRK05867 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.04 E-value=3.3 Score=35.97 Aligned_cols=74 Identities=19% Similarity=0.161 Sum_probs=50.1
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
+++++|-.|++.|. .+..|+++|++|+.++.+++.++...+.....+.. +.++..|+.+.
T Consensus 8 ~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~---------~~~~~~D~~~~~~~~~~~~ 78 (253)
T PRK05867 8 HGKRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSGGK---------VVPVCCDVSQHQQVTSMLD 78 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCe---------EEEEEccCCCHHHHHHHHH
Confidence 36789999986654 34455666999999999887776665554433211 16677887654
Q ss_pred -----CCCccEEEEccccc
Q 020710 217 -----DGKYDTVVCLDVLI 230 (322)
Q Consensus 217 -----~~~fD~V~~~~~l~ 230 (322)
-+..|.++.+....
T Consensus 79 ~~~~~~g~id~lv~~ag~~ 97 (253)
T PRK05867 79 QVTAELGGIDIAVCNAGII 97 (253)
T ss_pred HHHHHhCCCCEEEECCCCC
Confidence 26899999876553
|
|
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=87.96 E-value=1.7 Score=40.72 Aligned_cols=43 Identities=37% Similarity=0.376 Sum_probs=36.5
Q ss_pred CCCCeEEEECCCc-ccchHHHHhc-CC-EEEEEeCCHHHHHHHHHH
Q 020710 147 LKGIAVCDAGCGT-GSLAIPLAKQ-GA-IVSASDISAAMVAEARKK 189 (322)
Q Consensus 147 ~~~~~VLDvGcG~-G~~~~~la~~-~~-~v~gvD~s~~~l~~a~~~ 189 (322)
.++.+||.+|||. |..+..+++. |. +++++|.++++++.+++.
T Consensus 183 ~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~ 228 (386)
T cd08283 183 KPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSH 228 (386)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc
Confidence 4678999999988 8888888877 76 599999999999888775
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >PRK06172 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.75 E-value=3.5 Score=35.71 Aligned_cols=73 Identities=23% Similarity=0.169 Sum_probs=48.8
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
++++||-.|++.|. .+..|++.|++|+.++-+++-++...+.....+.. +.++.+|+.+.
T Consensus 6 ~~k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~---------~~~~~~D~~~~~~i~~~~~ 76 (253)
T PRK06172 6 SGKVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAGGE---------ALFVACDVTRDAEVKALVE 76 (253)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCc---------eEEEEcCCCCHHHHHHHHH
Confidence 36788988875544 23345556999999999887766555554433221 27788888654
Q ss_pred -----CCCccEEEEcccc
Q 020710 217 -----DGKYDTVVCLDVL 229 (322)
Q Consensus 217 -----~~~fD~V~~~~~l 229 (322)
.++.|+|+.+...
T Consensus 77 ~~~~~~g~id~li~~ag~ 94 (253)
T PRK06172 77 QTIAAYGRLDYAFNNAGI 94 (253)
T ss_pred HHHHHhCCCCEEEECCCC
Confidence 2578999987764
|
|
| >PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional | Back alignment and domain information |
|---|
Probab=87.71 E-value=2.8 Score=41.92 Aligned_cols=84 Identities=15% Similarity=0.110 Sum_probs=52.0
Q ss_pred CeEEEECCCcccchHHHH----hcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-------CC
Q 020710 150 IAVCDAGCGTGSLAIPLA----KQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------DG 218 (322)
Q Consensus 150 ~~VLDvGcG~G~~~~~la----~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------~~ 218 (322)
.+|+=+|+| .++..++ +++.+++.+|.+++.++.+++. +. ..+.+|..+. -.
T Consensus 401 ~~vII~G~G--r~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~----g~-----------~v~~GDat~~~~L~~agi~ 463 (601)
T PRK03659 401 PQVIIVGFG--RFGQVIGRLLMANKMRITVLERDISAVNLMRKY----GY-----------KVYYGDATQLELLRAAGAE 463 (601)
T ss_pred CCEEEecCc--hHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhC----CC-----------eEEEeeCCCHHHHHhcCCc
Confidence 456665555 4544444 4488999999999998887642 21 7889998775 35
Q ss_pred CccEEEEcccccccCcchHH-HHHHHHHhccCCeEEEE
Q 020710 219 KYDTVVCLDVLIHYPQSKAD-GMIAHLASLAEKRLILS 255 (322)
Q Consensus 219 ~fD~V~~~~~l~~~~~~~~~-~~l~~l~~~~~~~~il~ 255 (322)
+.|.|++. .++++.. .+...+++..+..-++.
T Consensus 464 ~A~~vv~~-----~~d~~~n~~i~~~~r~~~p~~~Iia 496 (601)
T PRK03659 464 KAEAIVIT-----CNEPEDTMKIVELCQQHFPHLHILA 496 (601)
T ss_pred cCCEEEEE-----eCCHHHHHHHHHHHHHHCCCCeEEE
Confidence 78888753 3343333 44455555444433443
|
|
| >KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=87.61 E-value=3.8 Score=36.68 Aligned_cols=75 Identities=25% Similarity=0.254 Sum_probs=57.1
Q ss_pred CCCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-------
Q 020710 147 LKGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL------- 216 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~------- 216 (322)
-.+..||==|.|.|. ++..++++|+++...|++.+-...-.+...+.| ++ .....|+.+.
T Consensus 36 v~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g---~~-------~~y~cdis~~eei~~~a 105 (300)
T KOG1201|consen 36 VSGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIG---EA-------KAYTCDISDREEIYRLA 105 (300)
T ss_pred ccCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcC---ce-------eEEEecCCCHHHHHHHH
Confidence 357789988888876 466677889999999999988877777776654 22 7888888764
Q ss_pred ------CCCccEEEEcccccc
Q 020710 217 ------DGKYDTVVCLDVLIH 231 (322)
Q Consensus 217 ------~~~fD~V~~~~~l~~ 231 (322)
-|..|+++.+..+.+
T Consensus 106 ~~Vk~e~G~V~ILVNNAGI~~ 126 (300)
T KOG1201|consen 106 KKVKKEVGDVDILVNNAGIVT 126 (300)
T ss_pred HHHHHhcCCceEEEecccccc
Confidence 478999998765543
|
|
| >KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=87.34 E-value=2.2 Score=39.62 Aligned_cols=90 Identities=14% Similarity=0.041 Sum_probs=56.1
Q ss_pred HHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc-CC-EEEEEeCCHHHHHHHHHHhH-------HhhhccCCCCCCCC
Q 020710 135 ENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ-GA-IVSASDISAAMVAEARKKAE-------EELLADNGGEAPVM 205 (322)
Q Consensus 135 ~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~-~~-~v~gvD~s~~~l~~a~~~~~-------~~~~~~~~~~~~~~ 205 (322)
+.+.+.+.+....+.....|+|.|.|.....++.. ++ .-+|+++....-+.+..+.. ..|. ....
T Consensus 179 ~ql~si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk------~~~~ 252 (419)
T KOG3924|consen 179 EQLRSIVDELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGK------KPNK 252 (419)
T ss_pred HHHHHHHHHhccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCC------CcCc
Confidence 44555555544567889999999999998888776 34 35677776544443332221 1121 1122
Q ss_pred CceEEcccccC------CCCccEEEEccccc
Q 020710 206 PKFEVKDLESL------DGKYDTVVCLDVLI 230 (322)
Q Consensus 206 ~~~~~~d~~~~------~~~fD~V~~~~~l~ 230 (322)
++.+.+++.+. ....++|+.+++.-
T Consensus 253 ~~~i~gsf~~~~~v~eI~~eatvi~vNN~~F 283 (419)
T KOG3924|consen 253 IETIHGSFLDPKRVTEIQTEATVIFVNNVAF 283 (419)
T ss_pred eeecccccCCHHHHHHHhhcceEEEEecccC
Confidence 36666776554 67789999888763
|
|
| >PRK07035 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.09 E-value=4 Score=35.35 Aligned_cols=73 Identities=19% Similarity=0.122 Sum_probs=48.8
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
++++||=.|++.|. +...|++.|++|+.++.++..++...+...+.+... .++..|+.+.
T Consensus 7 ~~k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~---------~~~~~D~~~~~~~~~~~~ 77 (252)
T PRK07035 7 TGKIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAAGGKA---------EALACHIGEMEQIDALFA 77 (252)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeE---------EEEEcCCCCHHHHHHHHH
Confidence 35678888888665 344455669999999998877666555554332221 5677777554
Q ss_pred -----CCCccEEEEcccc
Q 020710 217 -----DGKYDTVVCLDVL 229 (322)
Q Consensus 217 -----~~~fD~V~~~~~l 229 (322)
-+..|+++.+...
T Consensus 78 ~~~~~~~~id~li~~ag~ 95 (252)
T PRK07035 78 HIRERHGRLDILVNNAAA 95 (252)
T ss_pred HHHHHcCCCCEEEECCCc
Confidence 2578999977653
|
|
| >PRK08339 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.08 E-value=14 Score=32.36 Aligned_cols=74 Identities=23% Similarity=0.175 Sum_probs=49.0
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
+++++|-.|++.|. .+..|++.|++|+.+|.++.-++...+.+.... ..+ +.++..|+.+.
T Consensus 7 ~~k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~-------~~~~~~Dv~~~~~i~~~~~ 78 (263)
T PRK08339 7 SGKLAFTTASSKGIGFGVARVLARAGADVILLSRNEENLKKAREKIKSES-NVD-------VSYIVADLTKREDLERTVK 78 (263)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhc-CCc-------eEEEEecCCCHHHHHHHHH
Confidence 46778888877654 345566679999999999877666655543321 111 26778887764
Q ss_pred ----CCCccEEEEcccc
Q 020710 217 ----DGKYDTVVCLDVL 229 (322)
Q Consensus 217 ----~~~fD~V~~~~~l 229 (322)
-+..|+++.+...
T Consensus 79 ~~~~~g~iD~lv~nag~ 95 (263)
T PRK08339 79 ELKNIGEPDIFFFSTGG 95 (263)
T ss_pred HHHhhCCCcEEEECCCC
Confidence 2578998877654
|
|
| >PRK06197 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.74 E-value=14 Score=33.17 Aligned_cols=75 Identities=19% Similarity=0.155 Sum_probs=46.9
Q ss_pred CCCeEEEECCCcccchHH----HHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-------
Q 020710 148 KGIAVCDAGCGTGSLAIP----LAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~----la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~------- 216 (322)
.+++||=.|+. |..+.. |+++|++|+.++.+++..+.+.+.........+ +.++..|+.+.
T Consensus 15 ~~k~vlItGas-~gIG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~l~~~~~~~~-------~~~~~~Dl~d~~~v~~~~ 86 (306)
T PRK06197 15 SGRVAVVTGAN-TGLGYETAAALAAKGAHVVLAVRNLDKGKAAAARITAATPGAD-------VTLQELDLTSLASVRAAA 86 (306)
T ss_pred CCCEEEEcCCC-CcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCc-------eEEEECCCCCHHHHHHHH
Confidence 46778877764 444444 445699999998887766555444432211111 26788888764
Q ss_pred ------CCCccEEEEccccc
Q 020710 217 ------DGKYDTVVCLDVLI 230 (322)
Q Consensus 217 ------~~~fD~V~~~~~l~ 230 (322)
.+..|+|+.+..+.
T Consensus 87 ~~~~~~~~~iD~li~nAg~~ 106 (306)
T PRK06197 87 DALRAAYPRIDLLINNAGVM 106 (306)
T ss_pred HHHHhhCCCCCEEEECCccc
Confidence 25689999887653
|
|
| >PRK07890 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.57 E-value=5.3 Score=34.61 Aligned_cols=73 Identities=25% Similarity=0.234 Sum_probs=47.5
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
++++||=.|++.|. ++..|+++|++|+.++.++.-.+...+.....+.. +.++..|+.+.
T Consensus 4 ~~k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~---------~~~~~~D~~~~~~~~~~~~ 74 (258)
T PRK07890 4 KGKVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLGRR---------ALAVPTDITDEDQCANLVA 74 (258)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhCCc---------eEEEecCCCCHHHHHHHHH
Confidence 45778877765443 23445566999999999887666555444332221 26788887653
Q ss_pred -----CCCccEEEEcccc
Q 020710 217 -----DGKYDTVVCLDVL 229 (322)
Q Consensus 217 -----~~~fD~V~~~~~l 229 (322)
-+..|.|+.+...
T Consensus 75 ~~~~~~g~~d~vi~~ag~ 92 (258)
T PRK07890 75 LALERFGRVDALVNNAFR 92 (258)
T ss_pred HHHHHcCCccEEEECCcc
Confidence 2578999987754
|
|
| >PRK07097 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.41 E-value=6.7 Score=34.30 Aligned_cols=74 Identities=26% Similarity=0.221 Sum_probs=50.9
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
.++++|-.|++.|. .+..|+++|++|+.++-++..++...+.....+.. +.++..|+.+.
T Consensus 9 ~~k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~Dl~~~~~~~~~~~ 79 (265)
T PRK07097 9 KGKIALITGASYGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELGIE---------AHGYVCDVTDEDGVQAMVS 79 (265)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCc---------eEEEEcCCCCHHHHHHHHH
Confidence 46788888887654 34556667999999998887766655555433221 26788888664
Q ss_pred -----CCCccEEEEccccc
Q 020710 217 -----DGKYDTVVCLDVLI 230 (322)
Q Consensus 217 -----~~~fD~V~~~~~l~ 230 (322)
-+..|.++.+....
T Consensus 80 ~~~~~~~~id~li~~ag~~ 98 (265)
T PRK07097 80 QIEKEVGVIDILVNNAGII 98 (265)
T ss_pred HHHHhCCCCCEEEECCCCC
Confidence 26789999887654
|
|
| >PRK07417 arogenate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=86.39 E-value=2.6 Score=37.56 Aligned_cols=85 Identities=21% Similarity=0.178 Sum_probs=52.2
Q ss_pred eEEEECCCc--ccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccCCCCccEEEEccc
Q 020710 151 AVCDAGCGT--GSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESLDGKYDTVVCLDV 228 (322)
Q Consensus 151 ~VLDvGcG~--G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~fD~V~~~~~ 228 (322)
+|.=||+|. |.++..|.+.|.+|+++|.+++.++.+.+. +.. .....+.+ .-...|+|+.+
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~----g~~----------~~~~~~~~-~~~~aDlVila-- 64 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIER----GLV----------DEASTDLS-LLKDCDLVILA-- 64 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHC----CCc----------ccccCCHh-HhcCCCEEEEc--
Confidence 467788884 556677777799999999999887766542 111 11111221 12457999864
Q ss_pred ccccCcchHHHHHHHHHhccCCeEEEE
Q 020710 229 LIHYPQSKADGMIAHLASLAEKRLILS 255 (322)
Q Consensus 229 l~~~~~~~~~~~l~~l~~~~~~~~il~ 255 (322)
+|.....++++++...++++.++.
T Consensus 65 ---vp~~~~~~~~~~l~~~l~~~~ii~ 88 (279)
T PRK07417 65 ---LPIGLLLPPSEQLIPALPPEAIVT 88 (279)
T ss_pred ---CCHHHHHHHHHHHHHhCCCCcEEE
Confidence 444445567777776555555543
|
|
| >KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=86.23 E-value=1.3 Score=42.21 Aligned_cols=70 Identities=24% Similarity=0.269 Sum_probs=55.7
Q ss_pred CCCeEEEECCCcccchHHHHhc--C-CEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-------C
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQ--G-AIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------D 217 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~--~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------~ 217 (322)
++.+|||.=|++|.-++.+++. | .+|++-|.++..|+..+++..-++..+.+ +....|+--+ .
T Consensus 109 ~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~iv-------e~~~~DA~~lM~~~~~~~ 181 (525)
T KOG1253|consen 109 KSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIV-------EPHHSDANVLMYEHPMVA 181 (525)
T ss_pred CcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhc-------ccccchHHHHHHhccccc
Confidence 5779999999999999998887 4 36999999999999999998877666544 5556665433 4
Q ss_pred CCccEEE
Q 020710 218 GKYDTVV 224 (322)
Q Consensus 218 ~~fD~V~ 224 (322)
..||+|=
T Consensus 182 ~~FDvID 188 (525)
T KOG1253|consen 182 KFFDVID 188 (525)
T ss_pred cccceEe
Confidence 7899984
|
|
| >PRK05854 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.08 E-value=5.7 Score=35.97 Aligned_cols=77 Identities=21% Similarity=0.141 Sum_probs=50.3
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
.++++|=.|++.|. .+..|++.|++|+.++-+.+-.+.+.+.+.......+ +.++..|+.+.
T Consensus 13 ~gk~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~-------v~~~~~Dl~d~~sv~~~~~ 85 (313)
T PRK05854 13 SGKRAVVTGASDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVPDAK-------LSLRALDLSSLASVAALGE 85 (313)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCc-------eEEEEecCCCHHHHHHHHH
Confidence 46788888876554 3344556699999999887766655554433211111 27888898774
Q ss_pred -----CCCccEEEEcccccc
Q 020710 217 -----DGKYDTVVCLDVLIH 231 (322)
Q Consensus 217 -----~~~fD~V~~~~~l~~ 231 (322)
.+..|+++.+.....
T Consensus 86 ~~~~~~~~iD~li~nAG~~~ 105 (313)
T PRK05854 86 QLRAEGRPIHLLINNAGVMT 105 (313)
T ss_pred HHHHhCCCccEEEECCcccc
Confidence 367899998776543
|
|
| >PRK05876 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.72 E-value=6 Score=35.05 Aligned_cols=74 Identities=19% Similarity=0.189 Sum_probs=48.4
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
+++++|=.|++.|. ++..|+++|++|+.+|.++..++...+.+...+.. +.++..|+.+.
T Consensus 5 ~~k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~---------~~~~~~Dv~d~~~v~~~~~ 75 (275)
T PRK05876 5 PGRGAVITGGASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAEGFD---------VHGVMCDVRHREEVTHLAD 75 (275)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCe---------EEEEeCCCCCHHHHHHHHH
Confidence 35678888876554 23445556999999999887666554444332221 26778888664
Q ss_pred -----CCCccEEEEccccc
Q 020710 217 -----DGKYDTVVCLDVLI 230 (322)
Q Consensus 217 -----~~~fD~V~~~~~l~ 230 (322)
.+..|+++.+..+.
T Consensus 76 ~~~~~~g~id~li~nAg~~ 94 (275)
T PRK05876 76 EAFRLLGHVDVVFSNAGIV 94 (275)
T ss_pred HHHHHcCCCCEEEECCCcC
Confidence 25689999877653
|
|
| >PRK07063 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.44 E-value=5.2 Score=34.83 Aligned_cols=75 Identities=21% Similarity=0.264 Sum_probs=49.7
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
.++++|-.|++.|. .+..|+++|++|+.+|.+++.++...+.+.......+ +.++..|+.+.
T Consensus 6 ~~k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~-------~~~~~~Dl~~~~~~~~~~~ 78 (260)
T PRK07063 6 AGKVALVTGAAQGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVAGAR-------VLAVPADVTDAASVAAAVA 78 (260)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccCCce-------EEEEEccCCCHHHHHHHHH
Confidence 46789988876543 3344556699999999988777666555543111111 26778888664
Q ss_pred -----CCCccEEEEcccc
Q 020710 217 -----DGKYDTVVCLDVL 229 (322)
Q Consensus 217 -----~~~fD~V~~~~~l 229 (322)
-+..|.++.+...
T Consensus 79 ~~~~~~g~id~li~~ag~ 96 (260)
T PRK07063 79 AAEEAFGPLDVLVNNAGI 96 (260)
T ss_pred HHHHHhCCCcEEEECCCc
Confidence 2579999987654
|
|
| >PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=85.39 E-value=17 Score=31.15 Aligned_cols=72 Identities=18% Similarity=0.111 Sum_probs=46.7
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
++.+||=.|+..|. ++..|+++|++|++++-++.-++........ +.. +.++.+|+.+.
T Consensus 4 ~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-~~~---------~~~~~~D~~~~~~~~~~~~ 73 (251)
T PRK07231 4 EGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEILA-GGR---------AIAVAADVSDEADVEAAVA 73 (251)
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc-CCe---------EEEEECCCCCHHHHHHHHH
Confidence 35678888775433 2344556699999999998766554444322 111 16788888764
Q ss_pred -----CCCccEEEEcccc
Q 020710 217 -----DGKYDTVVCLDVL 229 (322)
Q Consensus 217 -----~~~fD~V~~~~~l 229 (322)
.+.+|+|+.+...
T Consensus 74 ~~~~~~~~~d~vi~~ag~ 91 (251)
T PRK07231 74 AALERFGSVDILVNNAGT 91 (251)
T ss_pred HHHHHhCCCCEEEECCCC
Confidence 2468999987765
|
|
| >PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated | Back alignment and domain information |
|---|
Probab=85.23 E-value=25 Score=34.20 Aligned_cols=165 Identities=16% Similarity=0.128 Sum_probs=84.5
Q ss_pred CeEEEECCCc--ccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHh-----hhccCCCCCCCCCceEEcccccCCCCccE
Q 020710 150 IAVCDAGCGT--GSLAIPLAKQGAIVSASDISAAMVAEARKKAEEE-----LLADNGGEAPVMPKFEVKDLESLDGKYDT 222 (322)
Q Consensus 150 ~~VLDvGcG~--G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~-----~~~~~~~~~~~~~~~~~~d~~~~~~~fD~ 222 (322)
.+|-=||+|+ +.++..++..|.+|+..|.+++.++...+..... .+.........++. ...|+.+.-...|+
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~-~~~~~~ea~~~aD~ 83 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLT-FCASLAEAVAGADW 83 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceE-eeCCHHHHhcCCCE
Confidence 4677888883 3456667777999999999998887654321100 00000000000001 12233332345788
Q ss_pred EEEcccccccCcch--HHHHHHHHHhccCCeEEEEECCChhhHH-HHHHhhc---cC-CCCCCccc---------cccC-
Q 020710 223 VVCLDVLIHYPQSK--ADGMIAHLASLAEKRLILSFAPKTFYYD-LLKRVGE---LF-PGPSKATR---------AYLH- 285 (322)
Q Consensus 223 V~~~~~l~~~~~~~--~~~~l~~l~~~~~~~~il~~~~~~~~~~-~~~~~~~---~~-~~~~~~~~---------~~~~- 285 (322)
|+. -+++.. ...+++.+....+++.+|..+....... +...+.. .+ ..+....+ +...
T Consensus 84 Vie-----avpe~~~vk~~l~~~l~~~~~~~~iI~SsTsgi~~s~l~~~~~~~~r~~~~hP~nP~~~~~Lvevv~g~~t~ 158 (495)
T PRK07531 84 IQE-----SVPERLDLKRRVLAEIDAAARPDALIGSSTSGFLPSDLQEGMTHPERLFVAHPYNPVYLLPLVELVGGGKTS 158 (495)
T ss_pred EEE-----cCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcceEEEEecCCCcccCceEEEcCCCCCC
Confidence 884 444432 3456777776666666665544332222 2121111 01 00100000 0001
Q ss_pred --CHHHHHHHHHHCCCEEEEEeeeecceehhhhhhhc
Q 020710 286 --AEADVERALQKVGWKIRKRGLITTQFYFARLVEAV 320 (322)
Q Consensus 286 --~~~~~~~~l~~aGf~vv~~~~~~~~~~f~~~~~~~ 320 (322)
..+.+..+++..|-+.+........|..++++.++
T Consensus 159 ~e~~~~~~~~~~~lG~~~v~~~k~~~gfi~nrl~~a~ 195 (495)
T PRK07531 159 PETIRRAKEILREIGMKPVHIAKEIDAFVGDRLLEAL 195 (495)
T ss_pred HHHHHHHHHHHHHcCCEEEeecCCCcchhHHHHHHHH
Confidence 23445677889999988876666777777776653
|
|
| >TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ | Back alignment and domain information |
|---|
Probab=84.96 E-value=12 Score=38.10 Aligned_cols=164 Identities=17% Similarity=0.089 Sum_probs=90.0
Q ss_pred CeEEEECCCcccchH--HHH-hcCCEEEEEeCCHHHHHHHHHHhHHhhh----ccCCCC-C----CCCCceEEcccccCC
Q 020710 150 IAVCDAGCGTGSLAI--PLA-KQGAIVSASDISAAMVAEARKKAEEELL----ADNGGE-A----PVMPKFEVKDLESLD 217 (322)
Q Consensus 150 ~~VLDvGcG~G~~~~--~la-~~~~~v~gvD~s~~~l~~a~~~~~~~~~----~~~~~~-~----~~~~~~~~~d~~~~~ 217 (322)
.+|.=||+|+=...+ .++ ..|.+|+.+|++++.++.+.++..+.-. ..+... . ..++. ...|+.. -
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~-~ 382 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALIT-GTTDYRG-F 382 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeE-EeCChHH-h
Confidence 479999998654433 344 3699999999999999888766532110 000000 0 00011 1123322 2
Q ss_pred CCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEECCChhhHHHHHH-hhc-------c-CCCCCC--------cc
Q 020710 218 GKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKR-VGE-------L-FPGPSK--------AT 280 (322)
Q Consensus 218 ~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~-~~~-------~-~~~~~~--------~~ 280 (322)
...|+|+=. +.+.+.- ..++++++-+..++..||..+..++....+.. ... . |.++.. ..
T Consensus 383 ~~adlViEa-v~E~l~~--K~~v~~~l~~~~~~~~ilasnTS~l~i~~la~~~~~p~r~~g~HffnP~~~~~lVEvv~g~ 459 (699)
T TIGR02440 383 KDVDIVIEA-VFEDLAL--KHQMVKDIEQECAAHTIFASNTSSLPIGQIAAAASRPENVIGLHYFSPVEKMPLVEVIPHA 459 (699)
T ss_pred ccCCEEEEe-ccccHHH--HHHHHHHHHhhCCCCcEEEeCCCCCCHHHHHHhcCCcccEEEEecCCccccCceEEEeCCC
Confidence 457888732 2222222 35889999888888888877655543322221 110 1 111000 00
Q ss_pred ccccCCHHHHHHHHHHCCCEEEEEeeeecceehhhhhhh
Q 020710 281 RAYLHAEADVERALQKVGWKIRKRGLITTQFYFARLVEA 319 (322)
Q Consensus 281 ~~~~~~~~~~~~~l~~aGf~vv~~~~~~~~~~f~~~~~~ 319 (322)
...-...+.+.+++++.|.+.+.+. ....|..++++..
T Consensus 460 ~T~~~~~~~~~~~~~~~gk~pv~v~-d~pGfi~nRl~~~ 497 (699)
T TIGR02440 460 GTSEQTIATTVALAKKQGKTPIVVA-DKAGFYVNRILAP 497 (699)
T ss_pred CCCHHHHHHHHHHHHHcCCeEEEEc-cccchHHHHHHHH
Confidence 0000144556678889999988874 5688888887654
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog. |
| >PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=84.78 E-value=4.7 Score=32.76 Aligned_cols=113 Identities=14% Similarity=0.125 Sum_probs=62.2
Q ss_pred eEEEECCCcc--cchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccCCCCccEEEEccc
Q 020710 151 AVCDAGCGTG--SLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESLDGKYDTVVCLDV 228 (322)
Q Consensus 151 ~VLDvGcG~G--~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~fD~V~~~~~ 228 (322)
+|-=||+|.= .++..|++.|.+|++.|.+++..+...+. + --.+.+..+.-...|+|++
T Consensus 3 ~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~----g------------~~~~~s~~e~~~~~dvvi~--- 63 (163)
T PF03446_consen 3 KIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEA----G------------AEVADSPAEAAEQADVVIL--- 63 (163)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHT----T------------EEEESSHHHHHHHBSEEEE---
T ss_pred EEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHh----h------------hhhhhhhhhHhhcccceEe---
Confidence 4555777632 23444556699999999998766554432 1 1223344444344599985
Q ss_pred ccccCc-chHHHHHHH--HHhcc-CCeEEEEECCChhhHHHHHHhhccCCCCCCccccccCCHHHHHHHHHHCCCEEEEE
Q 020710 229 LIHYPQ-SKADGMIAH--LASLA-EKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQKVGWKIRKR 304 (322)
Q Consensus 229 l~~~~~-~~~~~~l~~--l~~~~-~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~vv~~ 304 (322)
-+++ +....++.. +...+ ++..++.+...... ...++.+.+.+.|...+..
T Consensus 64 --~v~~~~~v~~v~~~~~i~~~l~~g~iiid~sT~~p~-----------------------~~~~~~~~~~~~g~~~vda 118 (163)
T PF03446_consen 64 --CVPDDDAVEAVLFGENILAGLRPGKIIIDMSTISPE-----------------------TSRELAERLAAKGVRYVDA 118 (163)
T ss_dssp ---SSSHHHHHHHHHCTTHGGGS-TTEEEEE-SS--HH-----------------------HHHHHHHHHHHTTEEEEEE
T ss_pred --ecccchhhhhhhhhhHHhhccccceEEEecCCcchh-----------------------hhhhhhhhhhhccceeeee
Confidence 3444 445666666 55544 55666666432211 2356777777778777665
Q ss_pred eee
Q 020710 305 GLI 307 (322)
Q Consensus 305 ~~~ 307 (322)
...
T Consensus 119 pV~ 121 (163)
T PF03446_consen 119 PVS 121 (163)
T ss_dssp EEE
T ss_pred eee
Confidence 544
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A .... |
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=84.75 E-value=7.2 Score=36.96 Aligned_cols=42 Identities=21% Similarity=0.281 Sum_probs=31.4
Q ss_pred CCCCeEEEECCCc-ccchHHHHhc-CCEEEEEeCCHHHHHHHHH
Q 020710 147 LKGIAVCDAGCGT-GSLAIPLAKQ-GAIVSASDISAAMVAEARK 188 (322)
Q Consensus 147 ~~~~~VLDvGcG~-G~~~~~la~~-~~~v~gvD~s~~~l~~a~~ 188 (322)
.++.+|+=+|||. |.....+++. |++|+.+|.++.-...|++
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~ 243 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAM 243 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHh
Confidence 4688999999995 5544444444 8999999999887666653
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >PRK08085 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.57 E-value=8.7 Score=33.27 Aligned_cols=73 Identities=23% Similarity=0.214 Sum_probs=46.8
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
.++++|=.|++.|. .+..|+++|++|+.++.++..++...+.....+.. +.++..|+.+.
T Consensus 8 ~~k~~lItGas~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~~~~---------~~~~~~Dl~~~~~~~~~~~ 78 (254)
T PRK08085 8 AGKNILITGSAQGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQEGIK---------AHAAPFNVTHKQEVEAAIE 78 (254)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcCCe---------EEEEecCCCCHHHHHHHHH
Confidence 35678888866543 23445556999999999877665554444332211 15667787654
Q ss_pred -----CCCccEEEEcccc
Q 020710 217 -----DGKYDTVVCLDVL 229 (322)
Q Consensus 217 -----~~~fD~V~~~~~l 229 (322)
.+.+|.|+.+...
T Consensus 79 ~~~~~~~~id~vi~~ag~ 96 (254)
T PRK08085 79 HIEKDIGPIDVLINNAGI 96 (254)
T ss_pred HHHHhcCCCCEEEECCCc
Confidence 2578999987754
|
|
| >PRK06194 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=84.51 E-value=5.9 Score=35.05 Aligned_cols=73 Identities=14% Similarity=0.017 Sum_probs=46.2
Q ss_pred CCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC---------
Q 020710 149 GIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL--------- 216 (322)
Q Consensus 149 ~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--------- 216 (322)
+.+||=.|++.|. ++..|+++|++|+.+|.+...++...+.....+.. +.++.+|+.+.
T Consensus 6 ~k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~---------~~~~~~D~~d~~~~~~~~~~ 76 (287)
T PRK06194 6 GKVAVITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQGAE---------VLGVRTDVSDAAQVEALADA 76 (287)
T ss_pred CCEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCCe---------EEEEECCCCCHHHHHHHHHH
Confidence 5678877754332 23344556999999999877665554444332211 26678887654
Q ss_pred ----CCCccEEEEccccc
Q 020710 217 ----DGKYDTVVCLDVLI 230 (322)
Q Consensus 217 ----~~~fD~V~~~~~l~ 230 (322)
.+..|+|+.+....
T Consensus 77 ~~~~~g~id~vi~~Ag~~ 94 (287)
T PRK06194 77 ALERFGAVHLLFNNAGVG 94 (287)
T ss_pred HHHHcCCCCEEEECCCCC
Confidence 24689999887654
|
|
| >PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed | Back alignment and domain information |
|---|
Probab=84.40 E-value=6.5 Score=33.74 Aligned_cols=74 Identities=20% Similarity=0.181 Sum_probs=47.4
Q ss_pred CCCeEEEECCCcccchHH----HHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-------
Q 020710 148 KGIAVCDAGCGTGSLAIP----LAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~----la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~------- 216 (322)
.+.+||=.|++ |..+.. |+++|++|++++-++..+....+.....+.. +.++.+|+.+.
T Consensus 5 ~~~~ilItGas-g~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~---------~~~~~~Dl~~~~~~~~~~ 74 (251)
T PRK12826 5 EGRVALVTGAA-RGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAGGK---------ARARQVDVRDRAALKAAV 74 (251)
T ss_pred CCCEEEEcCCC-CcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCe---------EEEEECCCCCHHHHHHHH
Confidence 35678877764 444444 4556999999998876655554444333221 26778888664
Q ss_pred ------CCCccEEEEcccccc
Q 020710 217 ------DGKYDTVVCLDVLIH 231 (322)
Q Consensus 217 ------~~~fD~V~~~~~l~~ 231 (322)
.+.+|.|+++.....
T Consensus 75 ~~~~~~~~~~d~vi~~ag~~~ 95 (251)
T PRK12826 75 AAGVEDFGRLDILVANAGIFP 95 (251)
T ss_pred HHHHHHhCCCCEEEECCCCCC
Confidence 147899998875543
|
|
| >PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=84.27 E-value=6.3 Score=33.89 Aligned_cols=73 Identities=16% Similarity=0.118 Sum_probs=46.5
Q ss_pred CCCeEEEECCCccc--c-hHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGS--L-AIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~--~-~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
++.++|-.|++.|. . ...++++|++|+.+|.++..++.+.+.....+.. +.++..|+.+.
T Consensus 4 ~~~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~---------~~~~~~D~~~~~~~~~~~~ 74 (253)
T PRK08217 4 KDKVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGALGTE---------VRGYAANVTDEEDVEATFA 74 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCc---------eEEEEcCCCCHHHHHHHHH
Confidence 36789988874433 2 2234456899999999987666655554433221 16677786553
Q ss_pred -----CCCccEEEEcccc
Q 020710 217 -----DGKYDTVVCLDVL 229 (322)
Q Consensus 217 -----~~~fD~V~~~~~l 229 (322)
.+..|.|+.+...
T Consensus 75 ~~~~~~~~id~vi~~ag~ 92 (253)
T PRK08217 75 QIAEDFGQLNGLINNAGI 92 (253)
T ss_pred HHHHHcCCCCEEEECCCc
Confidence 1568999987653
|
|
| >cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=84.18 E-value=3.1 Score=36.05 Aligned_cols=42 Identities=38% Similarity=0.385 Sum_probs=32.7
Q ss_pred CCCCeEEEECCCc-ccchHHHHhc-CCEEEEEeCCHHHHHHHHH
Q 020710 147 LKGIAVCDAGCGT-GSLAIPLAKQ-GAIVSASDISAAMVAEARK 188 (322)
Q Consensus 147 ~~~~~VLDvGcG~-G~~~~~la~~-~~~v~gvD~s~~~l~~a~~ 188 (322)
.++.+||..|+|. |..+..+++. |.+|++++.++...+.+++
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~ 176 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKE 176 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH
Confidence 4678999999995 6666666665 8899999999887776644
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro |
| >PRK05866 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.15 E-value=6.8 Score=35.08 Aligned_cols=73 Identities=19% Similarity=0.139 Sum_probs=48.2
Q ss_pred CCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC---------
Q 020710 149 GIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL--------- 216 (322)
Q Consensus 149 ~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--------- 216 (322)
+.+||=.|++.|. ++..|++.|++|+.++.+++.++...+.....+.. +.++..|+.+.
T Consensus 40 ~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~~~~---------~~~~~~Dl~d~~~v~~~~~~ 110 (293)
T PRK05866 40 GKRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVADRITRAGGD---------AMAVPCDLSDLDAVDALVAD 110 (293)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCc---------EEEEEccCCCHHHHHHHHHH
Confidence 5678888876544 23445566999999999987766655544332221 16778887664
Q ss_pred ----CCCccEEEEccccc
Q 020710 217 ----DGKYDTVVCLDVLI 230 (322)
Q Consensus 217 ----~~~fD~V~~~~~l~ 230 (322)
-+..|+|+.+....
T Consensus 111 ~~~~~g~id~li~~AG~~ 128 (293)
T PRK05866 111 VEKRIGGVDILINNAGRS 128 (293)
T ss_pred HHHHcCCCCEEEECCCCC
Confidence 25789999876543
|
|
| >PRK08862 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.05 E-value=5.8 Score=34.09 Aligned_cols=72 Identities=13% Similarity=-0.043 Sum_probs=50.0
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
.++++|=.|++.|. .+..|++.|++|+.++.+++.++...+...+.+.. +..+..|+.+.
T Consensus 4 ~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~~~~---------~~~~~~D~~~~~~~~~~~~ 74 (227)
T PRK08862 4 KSSIILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTYEQCSALTDN---------VYSFQLKDFSQESIRHLFD 74 (227)
T ss_pred CCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCC---------eEEEEccCCCHHHHHHHHH
Confidence 36789999998876 45566677999999999988877766655443321 14555665543
Q ss_pred -----CC-CccEEEEccc
Q 020710 217 -----DG-KYDTVVCLDV 228 (322)
Q Consensus 217 -----~~-~fD~V~~~~~ 228 (322)
-+ ..|+++.+..
T Consensus 75 ~~~~~~g~~iD~li~nag 92 (227)
T PRK08862 75 AIEQQFNRAPDVLVNNWT 92 (227)
T ss_pred HHHHHhCCCCCEEEECCc
Confidence 25 8999998763
|
|
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=83.97 E-value=4.3 Score=39.51 Aligned_cols=42 Identities=31% Similarity=0.350 Sum_probs=32.3
Q ss_pred CCCCeEEEECCCc-ccchHHHHhc-CCEEEEEeCCHHHHHHHHH
Q 020710 147 LKGIAVCDAGCGT-GSLAIPLAKQ-GAIVSASDISAAMVAEARK 188 (322)
Q Consensus 147 ~~~~~VLDvGcG~-G~~~~~la~~-~~~v~gvD~s~~~l~~a~~ 188 (322)
.++.+|+=+|||. |..+..+++. |+.|+++|.++..++.+++
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~ 205 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQS 205 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 3578999999995 4555555554 9999999999987776664
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >PRK07062 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.95 E-value=7.6 Score=33.88 Aligned_cols=76 Identities=18% Similarity=0.081 Sum_probs=49.2
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
.++++|=.|++.|. .+..|++.|++|+.++.+++-++...+...+.....+ +.++..|+.+.
T Consensus 7 ~~k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~-------~~~~~~D~~~~~~v~~~~~ 79 (265)
T PRK07062 7 EGRVAVVTGGSSGIGLATVELLLEAGASVAICGRDEERLASAEARLREKFPGAR-------LLAARCDVLDEADVAAFAA 79 (265)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhCCCce-------EEEEEecCCCHHHHHHHHH
Confidence 46789989877654 3344556699999999998777665555443211111 15667777654
Q ss_pred -----CCCccEEEEccccc
Q 020710 217 -----DGKYDTVVCLDVLI 230 (322)
Q Consensus 217 -----~~~fD~V~~~~~l~ 230 (322)
.+..|.++.+....
T Consensus 80 ~~~~~~g~id~li~~Ag~~ 98 (265)
T PRK07062 80 AVEARFGGVDMLVNNAGQG 98 (265)
T ss_pred HHHHhcCCCCEEEECCCCC
Confidence 26789998876553
|
|
| >PRK07814 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.84 E-value=9.8 Score=33.23 Aligned_cols=71 Identities=20% Similarity=0.163 Sum_probs=46.0
Q ss_pred CCCeEEEECCCcccchHH----HHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-------
Q 020710 148 KGIAVCDAGCGTGSLAIP----LAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~----la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~------- 216 (322)
+++++|=.|++ |..+.. |+++|++|++++.+++.++...+.....+.. +.++..|+.+.
T Consensus 9 ~~~~vlItGas-ggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~---------~~~~~~D~~~~~~~~~~~ 78 (263)
T PRK07814 9 DDQVAVVTGAG-RGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAAGRR---------AHVVAADLAHPEATAGLA 78 (263)
T ss_pred CCCEEEEECCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCc---------EEEEEccCCCHHHHHHHH
Confidence 46788888864 444444 4556999999999887665554444332211 26777887664
Q ss_pred ------CCCccEEEEccc
Q 020710 217 ------DGKYDTVVCLDV 228 (322)
Q Consensus 217 ------~~~fD~V~~~~~ 228 (322)
-+..|+|+.+..
T Consensus 79 ~~~~~~~~~id~vi~~Ag 96 (263)
T PRK07814 79 GQAVEAFGRLDIVVNNVG 96 (263)
T ss_pred HHHHHHcCCCCEEEECCC
Confidence 157899998654
|
|
| >PRK13394 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.66 E-value=7.9 Score=33.54 Aligned_cols=74 Identities=16% Similarity=0.155 Sum_probs=48.5
Q ss_pred CCCeEEEECCCcccch----HHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-------
Q 020710 148 KGIAVCDAGCGTGSLA----IPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~----~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~------- 216 (322)
+++++|=.|+. |..+ ..|+++|++|+.++.++...+...+.+...+.. +.++.+|+.+.
T Consensus 6 ~~~~vlItGas-g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~---------~~~~~~Dl~~~~~~~~~~ 75 (262)
T PRK13394 6 NGKTAVVTGAA-SGIGKEIALELARAGAAVAIADLNQDGANAVADEINKAGGK---------AIGVAMDVTNEDAVNAGI 75 (262)
T ss_pred CCCEEEEECCC-ChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhcCce---------EEEEECCCCCHHHHHHHH
Confidence 35678866664 3433 445556999999999987776666655443322 16778888664
Q ss_pred ------CCCccEEEEcccccc
Q 020710 217 ------DGKYDTVVCLDVLIH 231 (322)
Q Consensus 217 ------~~~fD~V~~~~~l~~ 231 (322)
.+..|+|+.+....+
T Consensus 76 ~~~~~~~~~~d~vi~~ag~~~ 96 (262)
T PRK13394 76 DKVAERFGSVDILVSNAGIQI 96 (262)
T ss_pred HHHHHHcCCCCEEEECCccCC
Confidence 256899988776543
|
|
| >PRK07677 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.64 E-value=6.4 Score=34.08 Aligned_cols=70 Identities=20% Similarity=0.155 Sum_probs=45.9
Q ss_pred CeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC----------
Q 020710 150 IAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL---------- 216 (322)
Q Consensus 150 ~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---------- 216 (322)
+++|-.|++.|. .+..|++.|++|+.++-++..++...+.+...+.. +.++..|+.+.
T Consensus 2 k~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~---------~~~~~~D~~~~~~~~~~~~~~ 72 (252)
T PRK07677 2 KVVIITGGSSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQFPGQ---------VLTVQMDVRNPEDVQKMVEQI 72 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCc---------EEEEEecCCCHHHHHHHHHHH
Confidence 567878876553 33445566999999999887666655554432211 26778887653
Q ss_pred ---CCCccEEEEccc
Q 020710 217 ---DGKYDTVVCLDV 228 (322)
Q Consensus 217 ---~~~fD~V~~~~~ 228 (322)
.+..|.|+.+..
T Consensus 73 ~~~~~~id~lI~~ag 87 (252)
T PRK07677 73 DEKFGRIDALINNAA 87 (252)
T ss_pred HHHhCCccEEEECCC
Confidence 257899997654
|
|
| >PRK07454 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.62 E-value=9.4 Score=32.69 Aligned_cols=72 Identities=13% Similarity=0.007 Sum_probs=46.6
Q ss_pred CCeEEEECCCcccchH----HHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 149 GIAVCDAGCGTGSLAI----PLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 149 ~~~VLDvGcG~G~~~~----~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
.+++|-.|+ +|..+. .|+++|.+|++++.++.-.+...+...+.+.. +.++.+|+.+.
T Consensus 6 ~k~vlItG~-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~---------~~~~~~D~~~~~~~~~~~~ 75 (241)
T PRK07454 6 MPRALITGA-SSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTGVK---------AAAYSIDLSNPEAIAPGIA 75 (241)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCCCc---------EEEEEccCCCHHHHHHHHH
Confidence 567888885 444444 44456999999999887655554444332211 26788888664
Q ss_pred -----CCCccEEEEccccc
Q 020710 217 -----DGKYDTVVCLDVLI 230 (322)
Q Consensus 217 -----~~~fD~V~~~~~l~ 230 (322)
-+..|.|+.+....
T Consensus 76 ~~~~~~~~id~lv~~ag~~ 94 (241)
T PRK07454 76 ELLEQFGCPDVLINNAGMA 94 (241)
T ss_pred HHHHHcCCCCEEEECCCcc
Confidence 15689999877653
|
|
| >PRK07523 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.62 E-value=8 Score=33.50 Aligned_cols=73 Identities=21% Similarity=0.162 Sum_probs=48.1
Q ss_pred CCCeEEEECCCcccchHH----HHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-------
Q 020710 148 KGIAVCDAGCGTGSLAIP----LAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~----la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~------- 216 (322)
.+++||=.|+ +|..+.. |+++|++|+.++-++..++...+.+...+.. +.++..|+.+.
T Consensus 9 ~~k~vlItGa-~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~---------~~~~~~D~~~~~~~~~~~ 78 (255)
T PRK07523 9 TGRRALVTGS-SQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQGLS---------AHALAFDVTDHDAVRAAI 78 (255)
T ss_pred CCCEEEEECC-cchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCce---------EEEEEccCCCHHHHHHHH
Confidence 4678998886 4444444 4456999999999887766655555433221 16777787663
Q ss_pred ------CCCccEEEEccccc
Q 020710 217 ------DGKYDTVVCLDVLI 230 (322)
Q Consensus 217 ------~~~fD~V~~~~~l~ 230 (322)
-+..|.|+.+....
T Consensus 79 ~~~~~~~~~~d~li~~ag~~ 98 (255)
T PRK07523 79 DAFEAEIGPIDILVNNAGMQ 98 (255)
T ss_pred HHHHHhcCCCCEEEECCCCC
Confidence 25689999877653
|
|
| >PRK07478 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.52 E-value=7.7 Score=33.59 Aligned_cols=72 Identities=18% Similarity=0.071 Sum_probs=48.1
Q ss_pred CCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC---------
Q 020710 149 GIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL--------- 216 (322)
Q Consensus 149 ~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--------- 216 (322)
++++|=.|++.|. .+..|++.|++|+.++-+++-++...+.....+.. +.++..|+.+.
T Consensus 6 ~k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~---------~~~~~~D~~~~~~~~~~~~~ 76 (254)
T PRK07478 6 GKVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEGGE---------AVALAGDVRDEAYAKALVAL 76 (254)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCc---------EEEEEcCCCCHHHHHHHHHH
Confidence 5678877776543 34455566999999999887766665555443321 26777887664
Q ss_pred ----CCCccEEEEcccc
Q 020710 217 ----DGKYDTVVCLDVL 229 (322)
Q Consensus 217 ----~~~fD~V~~~~~l 229 (322)
-+..|.++.+...
T Consensus 77 ~~~~~~~id~li~~ag~ 93 (254)
T PRK07478 77 AVERFGGLDIAFNNAGT 93 (254)
T ss_pred HHHhcCCCCEEEECCCC
Confidence 2578999987765
|
|
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=83.49 E-value=17 Score=31.39 Aligned_cols=101 Identities=20% Similarity=0.178 Sum_probs=58.8
Q ss_pred eEEEECCCc--ccchHHHHhcCCEEEEEeCCHHHHHHHHH-HhHHhhhccCCCCCCCCCceEEcccccC-------CCCc
Q 020710 151 AVCDAGCGT--GSLAIPLAKQGAIVSASDISAAMVAEARK-KAEEELLADNGGEAPVMPKFEVKDLESL-------DGKY 220 (322)
Q Consensus 151 ~VLDvGcG~--G~~~~~la~~~~~v~gvD~s~~~l~~a~~-~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------~~~f 220 (322)
+++=+|||. +..+..|.+.|..|+.+|.+++.++.... ... ...+++|..+. -..+
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~--------------~~~v~gd~t~~~~L~~agi~~a 67 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELD--------------THVVIGDATDEDVLEEAGIDDA 67 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcc--------------eEEEEecCCCHHHHHhcCCCcC
Confidence 567788873 23345555669999999999988766322 111 16778887765 3679
Q ss_pred cEEEEcccccccCcchHHHHHHHHHh-ccCCeEEEEECCChhhHHHHHHhh
Q 020710 221 DTVVCLDVLIHYPQSKADGMIAHLAS-LAEKRLILSFAPKTFYYDLLKRVG 270 (322)
Q Consensus 221 D~V~~~~~l~~~~~~~~~~~l~~l~~-~~~~~~il~~~~~~~~~~~~~~~~ 270 (322)
|+++.. ..+++...++-.+.. ..+..-++.-..+..+...+..++
T Consensus 68 D~vva~-----t~~d~~N~i~~~la~~~~gv~~viar~~~~~~~~~~~~~g 113 (225)
T COG0569 68 DAVVAA-----TGNDEVNSVLALLALKEFGVPRVIARARNPEHEKVLEKLG 113 (225)
T ss_pred CEEEEe-----eCCCHHHHHHHHHHHHhcCCCcEEEEecCHHHHHHHHHcC
Confidence 999864 233445555555553 233333443333433344444433
|
|
| >PRK06949 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.24 E-value=9.1 Score=33.09 Aligned_cols=72 Identities=24% Similarity=0.223 Sum_probs=46.7
Q ss_pred CCCeEEEECCCcccchHH----HHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-------
Q 020710 148 KGIAVCDAGCGTGSLAIP----LAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~----la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~------- 216 (322)
.+++||-.|++ |..+.. |++.|++|++++.+++.++............ +.++..|+.+.
T Consensus 8 ~~k~ilItGas-g~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~---------~~~~~~D~~~~~~~~~~~ 77 (258)
T PRK06949 8 EGKVALVTGAS-SGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAEGGA---------AHVVSLDVTDYQSIKAAV 77 (258)
T ss_pred CCCEEEEECCC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCc---------EEEEEecCCCHHHHHHHH
Confidence 46788888844 343333 4455899999999988776655544332211 16777787653
Q ss_pred ------CCCccEEEEcccc
Q 020710 217 ------DGKYDTVVCLDVL 229 (322)
Q Consensus 217 ------~~~fD~V~~~~~l 229 (322)
.+..|.|+.+...
T Consensus 78 ~~~~~~~~~~d~li~~ag~ 96 (258)
T PRK06949 78 AHAETEAGTIDILVNNSGV 96 (258)
T ss_pred HHHHHhcCCCCEEEECCCC
Confidence 2578999987764
|
|
| >PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=83.24 E-value=33 Score=30.62 Aligned_cols=163 Identities=18% Similarity=0.117 Sum_probs=83.1
Q ss_pred CCeEEEECCCccc--chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhh----ccCCCC-----CCCCCceEEcccccCC
Q 020710 149 GIAVCDAGCGTGS--LAIPLAKQGAIVSASDISAAMVAEARKKAEEELL----ADNGGE-----APVMPKFEVKDLESLD 217 (322)
Q Consensus 149 ~~~VLDvGcG~G~--~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~----~~~~~~-----~~~~~~~~~~d~~~~~ 217 (322)
-.+|.=||+|.-. ++..++..|.+|+..|.+++.++.+.+...+... ...... ...++. ...|+.. -
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~-~~~~~~~-~ 81 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARIS-TATDLED-L 81 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeE-eeCCHHH-h
Confidence 3568889998433 4556667799999999999988876554332100 000000 000001 1223332 2
Q ss_pred CCccEEEEcccccccCcc-h-HHHHHHHHHhccCCeEEEEECCChhhH-HHHHHhh--------ccCCCCC--Ccc----
Q 020710 218 GKYDTVVCLDVLIHYPQS-K-ADGMIAHLASLAEKRLILSFAPKTFYY-DLLKRVG--------ELFPGPS--KAT---- 280 (322)
Q Consensus 218 ~~fD~V~~~~~l~~~~~~-~-~~~~l~~l~~~~~~~~il~~~~~~~~~-~~~~~~~--------~~~~~~~--~~~---- 280 (322)
...|+|+. -+|.+ . ...+++.+...++++.++..+..+... .+..... .++.... ...
T Consensus 82 ~~aD~Vie-----avpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~s~la~~~~~~~r~~g~h~~~p~~~~~~vei~~ 156 (292)
T PRK07530 82 ADCDLVIE-----AATEDETVKRKIFAQLCPVLKPEAILATNTSSISITRLASATDRPERFIGIHFMNPVPVMKLVELIR 156 (292)
T ss_pred cCCCEEEE-----cCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcccEEEeeccCCcccCceEEEeC
Confidence 45788884 34432 2 356777887776666555433333221 2222211 0111000 000
Q ss_pred --ccccCCHHHHHHHHHHCCCEEEEEeeeecceehhhhhhh
Q 020710 281 --RAYLHAEADVERALQKVGWKIRKRGLITTQFYFARLVEA 319 (322)
Q Consensus 281 --~~~~~~~~~~~~~l~~aGf~vv~~~~~~~~~~f~~~~~~ 319 (322)
...--..+.+..+++..|.+++... ....|..++++..
T Consensus 157 g~~t~~~~~~~~~~~~~~~gk~~v~~~-d~pg~i~nRl~~~ 196 (292)
T PRK07530 157 GIATDEATFEAAKEFVTKLGKTITVAE-DFPAFIVNRILLP 196 (292)
T ss_pred CCCCCHHHHHHHHHHHHHcCCeEEEec-CcCChHHHHHHHH
Confidence 0000134556788888999888664 3456776766543
|
|
| >PRK08643 acetoin reductase; Validated | Back alignment and domain information |
|---|
Probab=83.13 E-value=8.2 Score=33.41 Aligned_cols=72 Identities=19% Similarity=0.149 Sum_probs=46.2
Q ss_pred CCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC---------
Q 020710 149 GIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL--------- 216 (322)
Q Consensus 149 ~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--------- 216 (322)
++++|=.|+..|. .+..|+++|++|+.+|.++...+...+.....+.. +.++..|+.+.
T Consensus 2 ~k~~lItGas~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~---------~~~~~~Dl~~~~~~~~~~~~ 72 (256)
T PRK08643 2 SKVALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKDGGK---------AIAVKADVSDRDQVFAAVRQ 72 (256)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCe---------EEEEECCCCCHHHHHHHHHH
Confidence 3467777765443 23344556999999999887766655554432211 26778888764
Q ss_pred ----CCCccEEEEcccc
Q 020710 217 ----DGKYDTVVCLDVL 229 (322)
Q Consensus 217 ----~~~fD~V~~~~~l 229 (322)
.+..|.++.+...
T Consensus 73 ~~~~~~~id~vi~~ag~ 89 (256)
T PRK08643 73 VVDTFGDLNVVVNNAGV 89 (256)
T ss_pred HHHHcCCCCEEEECCCC
Confidence 2578999987654
|
|
| >PRK08213 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.09 E-value=7.5 Score=33.80 Aligned_cols=72 Identities=21% Similarity=0.167 Sum_probs=47.7
Q ss_pred CCCeEEEECCCcccchHHH----HhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-------
Q 020710 148 KGIAVCDAGCGTGSLAIPL----AKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~l----a~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~------- 216 (322)
+++++|=.|+ +|..+..+ +++|++|+.++-++..++...+.....+.. +.++.+|+.+.
T Consensus 11 ~~k~ilItGa-~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~---------~~~~~~Dl~d~~~i~~~~ 80 (259)
T PRK08213 11 SGKTALVTGG-SRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALGID---------ALWIAADVADEADIERLA 80 (259)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCe---------EEEEEccCCCHHHHHHHH
Confidence 3678888885 44544444 445999999999887666555444332221 26788888764
Q ss_pred ------CCCccEEEEcccc
Q 020710 217 ------DGKYDTVVCLDVL 229 (322)
Q Consensus 217 ------~~~fD~V~~~~~l 229 (322)
.+..|.|+.+...
T Consensus 81 ~~~~~~~~~id~vi~~ag~ 99 (259)
T PRK08213 81 EETLERFGHVDILVNNAGA 99 (259)
T ss_pred HHHHHHhCCCCEEEECCCC
Confidence 2578999987654
|
|
| >PRK07576 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.07 E-value=7.1 Score=34.19 Aligned_cols=71 Identities=20% Similarity=0.136 Sum_probs=44.8
Q ss_pred CCCeEEEECCCcccch----HHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-------
Q 020710 148 KGIAVCDAGCGTGSLA----IPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~----~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~------- 216 (322)
+++++|-.|.+ |..+ ..|++.|++|+.+|.+++.++...+.....+.. +.++..|+.+.
T Consensus 8 ~~k~ilItGas-ggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~---------~~~~~~Dv~~~~~i~~~~ 77 (264)
T PRK07576 8 AGKNVVVVGGT-SGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAGPE---------GLGVSADVRDYAAVEAAF 77 (264)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCc---------eEEEECCCCCHHHHHHHH
Confidence 46788888863 3333 344556999999999887665554444332211 15677787653
Q ss_pred ------CCCccEEEEccc
Q 020710 217 ------DGKYDTVVCLDV 228 (322)
Q Consensus 217 ------~~~fD~V~~~~~ 228 (322)
.+..|+++++..
T Consensus 78 ~~~~~~~~~iD~vi~~ag 95 (264)
T PRK07576 78 AQIADEFGPIDVLVSGAA 95 (264)
T ss_pred HHHHHHcCCCCEEEECCC
Confidence 256899997654
|
|
| >PRK06125 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.97 E-value=12 Score=32.47 Aligned_cols=74 Identities=19% Similarity=0.118 Sum_probs=47.8
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
.++++|=.|++.|. .+..|++.|++|++++.+++..+...+.+..... .+ +.++..|+.+.
T Consensus 6 ~~k~vlItG~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~-~~-------~~~~~~D~~~~~~~~~~~~ 77 (259)
T PRK06125 6 AGKRVLITGASKGIGAAAAEAFAAEGCHLHLVARDADALEALAADLRAAHG-VD-------VAVHALDLSSPEAREQLAA 77 (259)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhcC-Cc-------eEEEEecCCCHHHHHHHHH
Confidence 35788888875443 2333556699999999998777665555443211 11 26777787654
Q ss_pred -CCCccEEEEcccc
Q 020710 217 -DGKYDTVVCLDVL 229 (322)
Q Consensus 217 -~~~fD~V~~~~~l 229 (322)
.+..|.++.+...
T Consensus 78 ~~g~id~lv~~ag~ 91 (259)
T PRK06125 78 EAGDIDILVNNAGA 91 (259)
T ss_pred HhCCCCEEEECCCC
Confidence 3679999987654
|
|
| >PRK12429 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.82 E-value=26 Score=30.16 Aligned_cols=74 Identities=19% Similarity=0.159 Sum_probs=46.9
Q ss_pred CCeEEEECCCcccchHHHHh----cCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 149 GIAVCDAGCGTGSLAIPLAK----QGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 149 ~~~VLDvGcG~G~~~~~la~----~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
+++||=.|+ +|..+..+++ +|.+|++++.++...+...+.....+.. +.++.+|+.+.
T Consensus 4 ~~~vlItG~-sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~---------~~~~~~Dl~~~~~~~~~~~ 73 (258)
T PRK12429 4 GKVALVTGA-ASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAGGK---------AIGVAMDVTDEEAINAGID 73 (258)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCc---------EEEEEcCCCCHHHHHHHHH
Confidence 467776665 4555555544 4899999999887666554444332211 26778887764
Q ss_pred -----CCCccEEEEccccccc
Q 020710 217 -----DGKYDTVVCLDVLIHY 232 (322)
Q Consensus 217 -----~~~fD~V~~~~~l~~~ 232 (322)
.+..|+|+.+....+.
T Consensus 74 ~~~~~~~~~d~vi~~a~~~~~ 94 (258)
T PRK12429 74 YAVETFGGVDILVNNAGIQHV 94 (258)
T ss_pred HHHHHcCCCCEEEECCCCCCC
Confidence 2578999987754433
|
|
| >PRK08340 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.82 E-value=13 Score=32.36 Aligned_cols=69 Identities=25% Similarity=0.117 Sum_probs=46.4
Q ss_pred eEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-----------
Q 020710 151 AVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL----------- 216 (322)
Q Consensus 151 ~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~----------- 216 (322)
++|=.|++.|. .+..|+++|++|+.++.++..++.+.+.+...+ + +.++..|+.+.
T Consensus 2 ~vlItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~---~-------~~~~~~Dv~d~~~~~~~~~~~~ 71 (259)
T PRK08340 2 NVLVTASSRGIGFNVARELLKKGARVVISSRNEENLEKALKELKEYG---E-------VYAVKADLSDKDDLKNLVKEAW 71 (259)
T ss_pred eEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC---C-------ceEEEcCCCCHHHHHHHHHHHH
Confidence 57777876554 344455669999999999887766655554322 1 26778887653
Q ss_pred --CCCccEEEEcccc
Q 020710 217 --DGKYDTVVCLDVL 229 (322)
Q Consensus 217 --~~~fD~V~~~~~l 229 (322)
.+..|+++.+...
T Consensus 72 ~~~g~id~li~naG~ 86 (259)
T PRK08340 72 ELLGGIDALVWNAGN 86 (259)
T ss_pred HhcCCCCEEEECCCC
Confidence 2679999987654
|
|
| >PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.63 E-value=6.6 Score=34.15 Aligned_cols=72 Identities=29% Similarity=0.237 Sum_probs=45.7
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
.+++||=.|++.|. .+..|++.|++|+.++.+. ..+.+.+...+.+.. +.++..|+.+.
T Consensus 14 ~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~-~~~~~~~~~~~~~~~---------~~~~~~D~~~~~~i~~~~~ 83 (258)
T PRK06935 14 DGKVAIVTGGNTGLGQGYAVALAKAGADIIITTHGT-NWDETRRLIEKEGRK---------VTFVQVDLTKPESAEKVVK 83 (258)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCc-HHHHHHHHHHhcCCc---------eEEEEcCCCCHHHHHHHHH
Confidence 46789999887664 2344556699999988773 333444433332211 26778887764
Q ss_pred -----CCCccEEEEcccc
Q 020710 217 -----DGKYDTVVCLDVL 229 (322)
Q Consensus 217 -----~~~fD~V~~~~~l 229 (322)
-+..|.++.+...
T Consensus 84 ~~~~~~g~id~li~~ag~ 101 (258)
T PRK06935 84 EALEEFGKIDILVNNAGT 101 (258)
T ss_pred HHHHHcCCCCEEEECCCC
Confidence 2578999987654
|
|
| >PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional | Back alignment and domain information |
|---|
Probab=82.55 E-value=6.3 Score=39.55 Aligned_cols=63 Identities=21% Similarity=0.204 Sum_probs=44.6
Q ss_pred CCeEEEECCCc-ccch-HHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-------CCC
Q 020710 149 GIAVCDAGCGT-GSLA-IPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------DGK 219 (322)
Q Consensus 149 ~~~VLDvGcG~-G~~~-~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------~~~ 219 (322)
..+|+=+|||. |... +.|.+.|.+++.+|.+++.++.+++. +. ..+.+|..+. -.+
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~----g~-----------~v~~GDat~~~~L~~agi~~ 464 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKF----GM-----------KVFYGDATRMDLLESAGAAK 464 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhc----CC-----------eEEEEeCCCHHHHHhcCCCc
Confidence 45788888873 3332 33444588999999999999888652 21 7889998775 257
Q ss_pred ccEEEEc
Q 020710 220 YDTVVCL 226 (322)
Q Consensus 220 fD~V~~~ 226 (322)
.|+|++.
T Consensus 465 A~~vvv~ 471 (621)
T PRK03562 465 AEVLINA 471 (621)
T ss_pred CCEEEEE
Confidence 8888863
|
|
| >PRK10669 putative cation:proton antiport protein; Provisional | Back alignment and domain information |
|---|
Probab=82.31 E-value=7.4 Score=38.51 Aligned_cols=59 Identities=14% Similarity=0.063 Sum_probs=40.7
Q ss_pred CeEEEECCCcccchHHHH----hcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-------CC
Q 020710 150 IAVCDAGCGTGSLAIPLA----KQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------DG 218 (322)
Q Consensus 150 ~~VLDvGcG~G~~~~~la----~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------~~ 218 (322)
.+|+=+||| ..+..++ ++|.+|+.+|.+++.++.+++. +. ..+.+|..+. -+
T Consensus 418 ~hiiI~G~G--~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~----g~-----------~~i~GD~~~~~~L~~a~i~ 480 (558)
T PRK10669 418 NHALLVGYG--RVGSLLGEKLLAAGIPLVVIETSRTRVDELRER----GI-----------RAVLGNAANEEIMQLAHLD 480 (558)
T ss_pred CCEEEECCC--hHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHC----CC-----------eEEEcCCCCHHHHHhcCcc
Confidence 456666666 3444444 4488999999999988877642 21 7889998775 25
Q ss_pred CccEEEE
Q 020710 219 KYDTVVC 225 (322)
Q Consensus 219 ~fD~V~~ 225 (322)
+.|.+++
T Consensus 481 ~a~~viv 487 (558)
T PRK10669 481 CARWLLL 487 (558)
T ss_pred ccCEEEE
Confidence 7887764
|
|
| >PRK08589 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=82.30 E-value=8.3 Score=33.95 Aligned_cols=73 Identities=27% Similarity=0.223 Sum_probs=46.6
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
+++++|=.|++.|. .+..|+++|++|+.++.+ ..++...+.+.+.+.. +.++..|+.+.
T Consensus 5 ~~k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~-~~~~~~~~~~~~~~~~---------~~~~~~Dl~~~~~~~~~~~ 74 (272)
T PRK08589 5 ENKVAVITGASTGIGQASAIALAQEGAYVLAVDIA-EAVSETVDKIKSNGGK---------AKAYHVDISDEQQVKDFAS 74 (272)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCc-HHHHHHHHHHHhcCCe---------EEEEEeecCCHHHHHHHHH
Confidence 36688888886654 344556679999999988 4444433333332211 16777887654
Q ss_pred -----CCCccEEEEccccc
Q 020710 217 -----DGKYDTVVCLDVLI 230 (322)
Q Consensus 217 -----~~~fD~V~~~~~l~ 230 (322)
-+..|+++.+..+.
T Consensus 75 ~~~~~~g~id~li~~Ag~~ 93 (272)
T PRK08589 75 EIKEQFGRVDVLFNNAGVD 93 (272)
T ss_pred HHHHHcCCcCEEEECCCCC
Confidence 26789999877553
|
|
| >PRK09242 tropinone reductase; Provisional | Back alignment and domain information |
|---|
Probab=82.29 E-value=10 Score=32.94 Aligned_cols=75 Identities=20% Similarity=0.085 Sum_probs=48.6
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
.++++|-.|++.|. ++..|++.|++|+.++.+++.++...+.........+ +.++..|+.+.
T Consensus 8 ~~k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~-------~~~~~~Dl~~~~~~~~~~~ 80 (257)
T PRK09242 8 DGQTALITGASKGIGLAIAREFLGLGADVLIVARDADALAQARDELAEEFPERE-------VHGLAADVSDDEDRRAILD 80 (257)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCCe-------EEEEECCCCCHHHHHHHHH
Confidence 36788999886543 3344556699999999988776655555433211111 26678887653
Q ss_pred -----CCCccEEEEcccc
Q 020710 217 -----DGKYDTVVCLDVL 229 (322)
Q Consensus 217 -----~~~fD~V~~~~~l 229 (322)
-+..|.|+.+...
T Consensus 81 ~~~~~~g~id~li~~ag~ 98 (257)
T PRK09242 81 WVEDHWDGLHILVNNAGG 98 (257)
T ss_pred HHHHHcCCCCEEEECCCC
Confidence 3678999987765
|
|
| >PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes | Back alignment and domain information |
|---|
Probab=82.28 E-value=2.5 Score=37.05 Aligned_cols=56 Identities=18% Similarity=0.240 Sum_probs=39.2
Q ss_pred hHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHh
Q 020710 132 KTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKA 190 (322)
Q Consensus 132 ~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~ 190 (322)
.++..+.+.++.. +..+++|+-||+|..+..+...+.+|+.-|+++..+...+..+
T Consensus 7 ~l~~~I~~~ip~~---~~~~~vepF~G~g~V~~~~~~~~~~vi~ND~~~~l~~~~~~~l 62 (260)
T PF02086_consen 7 KLAKWIIELIPKN---KHKTYVEPFAGGGSVFLNLKQPGKRVIINDINPDLINFWKAVL 62 (260)
T ss_dssp GGHHHHHHHS-S----S-SEEEETT-TTSHHHHCC---SSEEEEEES-HHHHHHHHHHH
T ss_pred HHHHHHHHHcCCC---CCCEEEEEecchhHHHHHhcccccceeeeechHHHHHHHHHHH
Confidence 4567788887762 4789999999999999888778889999999998877666333
|
There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B. |
| >COG1568 Predicted methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.26 E-value=10 Score=33.79 Aligned_cols=77 Identities=23% Similarity=0.280 Sum_probs=57.5
Q ss_pred HhhhcCCCCCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-
Q 020710 140 MLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL- 216 (322)
Q Consensus 140 ~l~~~~~~~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~- 216 (322)
++...++..++.|+-+| -.-..+.+++-. ..++..|||++..++..++...+.+..+ ++....|+.++
T Consensus 144 lm~~RGDL~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~~--------ie~~~~Dlr~pl 214 (354)
T COG1568 144 LMYSRGDLEGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYNN--------IEAFVFDLRNPL 214 (354)
T ss_pred eeccccCcCCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCccc--------hhheeehhcccC
Confidence 33444566788899999 444455555544 4579999999999999999988888764 37788888765
Q ss_pred ----CCCccEEEE
Q 020710 217 ----DGKYDTVVC 225 (322)
Q Consensus 217 ----~~~fD~V~~ 225 (322)
..+||+.+.
T Consensus 215 pe~~~~kFDvfiT 227 (354)
T COG1568 215 PEDLKRKFDVFIT 227 (354)
T ss_pred hHHHHhhCCeeec
Confidence 589999874
|
|
| >PRK06196 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=82.23 E-value=26 Score=31.62 Aligned_cols=69 Identities=20% Similarity=0.223 Sum_probs=45.7
Q ss_pred CCCeEEEECCCcccchHH----HHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-------
Q 020710 148 KGIAVCDAGCGTGSLAIP----LAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~----la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~------- 216 (322)
.+++||=.|++. ..+.. |++.|++|++++.+++..+...+.... +.++.+|+.+.
T Consensus 25 ~~k~vlITGasg-gIG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~~~l~~-------------v~~~~~Dl~d~~~v~~~~ 90 (315)
T PRK06196 25 SGKTAIVTGGYS-GLGLETTRALAQAGAHVIVPARRPDVAREALAGIDG-------------VEVVMLDLADLESVRAFA 90 (315)
T ss_pred CCCEEEEeCCCc-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhhh-------------CeEEEccCCCHHHHHHHH
Confidence 457888888654 44444 445699999999887765544333221 16778888764
Q ss_pred ------CCCccEEEEccccc
Q 020710 217 ------DGKYDTVVCLDVLI 230 (322)
Q Consensus 217 ------~~~fD~V~~~~~l~ 230 (322)
.+..|+++.+..+.
T Consensus 91 ~~~~~~~~~iD~li~nAg~~ 110 (315)
T PRK06196 91 ERFLDSGRRIDILINNAGVM 110 (315)
T ss_pred HHHHhcCCCCCEEEECCCCC
Confidence 26789999877653
|
|
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=82.21 E-value=3.6 Score=38.04 Aligned_cols=45 Identities=38% Similarity=0.447 Sum_probs=35.1
Q ss_pred CCCeEEEECCCc-ccchHHHHhc-CC-EEEEEeCCHHHHHHHHHHhHH
Q 020710 148 KGIAVCDAGCGT-GSLAIPLAKQ-GA-IVSASDISAAMVAEARKKAEE 192 (322)
Q Consensus 148 ~~~~VLDvGcG~-G~~~~~la~~-~~-~v~gvD~s~~~l~~a~~~~~~ 192 (322)
++.+|+=+|||. |.++..+++. |+ +|+.+|.+++-++.|++....
T Consensus 168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~ 215 (350)
T COG1063 168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGA 215 (350)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCC
Confidence 344899999995 6666666666 54 699999999999999886543
|
|
| >PRK09291 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.13 E-value=9 Score=33.12 Aligned_cols=71 Identities=27% Similarity=0.243 Sum_probs=45.3
Q ss_pred CeEEEECCCcccc---hHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-------CCC
Q 020710 150 IAVCDAGCGTGSL---AIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------DGK 219 (322)
Q Consensus 150 ~~VLDvGcG~G~~---~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------~~~ 219 (322)
++||-.|++.|.- +..|++.|++|++++-++...+.........+.. +.++.+|+.+. .+.
T Consensus 3 ~~vlVtGasg~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~---------~~~~~~D~~~~~~~~~~~~~~ 73 (257)
T PRK09291 3 KTILITGAGSGFGREVALRLARKGHNVIAGVQIAPQVTALRAEAARRGLA---------LRVEKLDLTDAIDRAQAAEWD 73 (257)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCc---------ceEEEeeCCCHHHHHHHhcCC
Confidence 4688888754432 3334556999999998876655544443332221 26778888664 457
Q ss_pred ccEEEEcccc
Q 020710 220 YDTVVCLDVL 229 (322)
Q Consensus 220 fD~V~~~~~l 229 (322)
.|.|+.+...
T Consensus 74 id~vi~~ag~ 83 (257)
T PRK09291 74 VDVLLNNAGI 83 (257)
T ss_pred CCEEEECCCc
Confidence 9999987553
|
|
| >PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known | Back alignment and domain information |
|---|
Probab=81.91 E-value=11 Score=30.89 Aligned_cols=121 Identities=14% Similarity=0.151 Sum_probs=61.7
Q ss_pred ECCCcccchHHHHhc---CCEEEEEeCCH--HHHHHHH---HHhHHhhhccCCCCCCCCCceEEcccccC-------CCC
Q 020710 155 AGCGTGSLAIPLAKQ---GAIVSASDISA--AMVAEAR---KKAEEELLADNGGEAPVMPKFEVKDLESL-------DGK 219 (322)
Q Consensus 155 vGcG~G~~~~~la~~---~~~v~gvD~s~--~~l~~a~---~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------~~~ 219 (322)
||=|.=.++..|++. +..+++.-... +..+... .++.+....+ + ......|+..+ .+.
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g-~------~V~~~VDat~l~~~~~~~~~~ 75 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELG-V------TVLHGVDATKLHKHFRLKNQR 75 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcC-C------ccccCCCCCcccccccccCCc
Confidence 555666666777766 34566655443 3332222 2222221111 0 02344465554 478
Q ss_pred ccEEEEcccccccC-------------cchHHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCCCCCccccccCC
Q 020710 220 YDTVVCLDVLIHYP-------------QSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHA 286 (322)
Q Consensus 220 fD~V~~~~~l~~~~-------------~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (322)
||.|+-+.- |.. ..-+..+++....++..+|-|.++..+- .. ++
T Consensus 76 FDrIiFNFP--H~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~-------------------~p--y~ 132 (166)
T PF10354_consen 76 FDRIIFNFP--HVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDG-------------------QP--YD 132 (166)
T ss_pred CCEEEEeCC--CCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC-------------------CC--Cc
Confidence 999998764 333 1124566666666664443332221110 00 12
Q ss_pred HHHHHHHHHHCCCEEEEEe
Q 020710 287 EADVERALQKVGWKIRKRG 305 (322)
Q Consensus 287 ~~~~~~~l~~aGf~vv~~~ 305 (322)
.-.++++..++||.+++..
T Consensus 133 ~W~i~~lA~~~gl~l~~~~ 151 (166)
T PF10354_consen 133 SWNIEELAAEAGLVLVRKV 151 (166)
T ss_pred cccHHHHHHhcCCEEEEEe
Confidence 2367788999999998753
|
|
| >PRK07109 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=81.68 E-value=10 Score=34.71 Aligned_cols=73 Identities=19% Similarity=0.079 Sum_probs=49.0
Q ss_pred CCCeEEEECCCcccc---hHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGSL---AIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~---~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
++++||=.|++.|.- +..|+++|++|+.++-+++.++...+.+...+.. +.++.+|+.+.
T Consensus 7 ~~k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g~~---------~~~v~~Dv~d~~~v~~~~~ 77 (334)
T PRK07109 7 GRQVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAGGE---------ALAVVADVADAEAVQAAAD 77 (334)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCc---------EEEEEecCCCHHHHHHHHH
Confidence 356788888755442 3445567999999999987776665555443322 16778887664
Q ss_pred -----CCCccEEEEcccc
Q 020710 217 -----DGKYDTVVCLDVL 229 (322)
Q Consensus 217 -----~~~fD~V~~~~~l 229 (322)
-+..|+++.+...
T Consensus 78 ~~~~~~g~iD~lInnAg~ 95 (334)
T PRK07109 78 RAEEELGPIDTWVNNAMV 95 (334)
T ss_pred HHHHHCCCCCEEEECCCc
Confidence 2579999977654
|
|
| >PRK06720 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=81.54 E-value=15 Score=30.10 Aligned_cols=43 Identities=33% Similarity=0.347 Sum_probs=29.0
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHh
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKA 190 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~ 190 (322)
+++.+|-.|.+.|. ....|++.|.+|+.+|.+...++...+..
T Consensus 15 ~gk~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~~~~~~~~~~l 60 (169)
T PRK06720 15 AGKVAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQESGQATVEEI 60 (169)
T ss_pred CCCEEEEecCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence 35678888876544 34445667999999999877665444443
|
|
| >TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC | Back alignment and domain information |
|---|
Probab=81.53 E-value=40 Score=32.92 Aligned_cols=161 Identities=17% Similarity=0.133 Sum_probs=85.3
Q ss_pred CCeEEEECCCcc--cchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhh----ccCCCC-----CCCCCceEEcccccCC
Q 020710 149 GIAVCDAGCGTG--SLAIPLAKQGAIVSASDISAAMVAEARKKAEEELL----ADNGGE-----APVMPKFEVKDLESLD 217 (322)
Q Consensus 149 ~~~VLDvGcG~G--~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~----~~~~~~-----~~~~~~~~~~d~~~~~ 217 (322)
-.+|-=||+|+= .++..++..|..|+..|.+++.++.+.++..+.-. ..+... ...++. ...|+..+
T Consensus 5 ~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~-~~~~~~~l- 82 (503)
T TIGR02279 5 VVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLI-PVTDLHAL- 82 (503)
T ss_pred ccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccE-EeCCHHHh-
Confidence 456888999842 34455667799999999999999887665432110 000000 000001 12333333
Q ss_pred CCccEEEEcccccccCcc-h-HHHHHHHHHhccCCeEEEEECCChhhHHH-HHHhh-------c-cCCCCC--C---ccc
Q 020710 218 GKYDTVVCLDVLIHYPQS-K-ADGMIAHLASLAEKRLILSFAPKTFYYDL-LKRVG-------E-LFPGPS--K---ATR 281 (322)
Q Consensus 218 ~~fD~V~~~~~l~~~~~~-~-~~~~l~~l~~~~~~~~il~~~~~~~~~~~-~~~~~-------~-~~~~~~--~---~~~ 281 (322)
...|+|+. -++++ . ...+++.+....+++.|+..+..+..... ...+. - ++.... + ...
T Consensus 83 ~~aDlVIE-----av~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i~~iA~~~~~p~r~~G~HFf~Papv~~LvEvv~ 157 (503)
T TIGR02279 83 ADAGLVIE-----AIVENLEVKKALFAQLEELCPADTIIASNTSSLSITAIAAGLARPERVAGLHFFNPAPVMALVEVVS 157 (503)
T ss_pred CCCCEEEE-----cCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHHhcCcccceEEEeccCccccCceEEEeC
Confidence 35788884 44432 1 34677888777788888776555543332 11111 1 111000 0 000
Q ss_pred c---ccCCHHHHHHHHHHCCCEEEEEeeeecceehhhhh
Q 020710 282 A---YLHAEADVERALQKVGWKIRKRGLITTQFYFARLV 317 (322)
Q Consensus 282 ~---~~~~~~~~~~~l~~aGf~vv~~~~~~~~~~f~~~~ 317 (322)
+ .--..+.+..+++..|-..+.+. ....|..++++
T Consensus 158 g~~Ts~e~~~~~~~l~~~lgk~pv~v~-d~pGfi~Nrl~ 195 (503)
T TIGR02279 158 GLATAAEVAEQLYETALAWGKQPVHCH-STPGFIVNRVA 195 (503)
T ss_pred CCCCCHHHHHHHHHHHHHcCCeeeEeC-CCCCcHHHHHH
Confidence 0 00134556778888899888774 23555555554
|
This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families. |
| >PRK07024 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=81.47 E-value=7.8 Score=33.70 Aligned_cols=72 Identities=18% Similarity=0.183 Sum_probs=46.0
Q ss_pred CeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC----------
Q 020710 150 IAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL---------- 216 (322)
Q Consensus 150 ~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---------- 216 (322)
++||=.|+..|. ++..|+++|++|+.+|.+++.++...+.....+ + +.++.+|+.+.
T Consensus 3 ~~vlItGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~---~-------~~~~~~Dl~~~~~i~~~~~~~ 72 (257)
T PRK07024 3 LKVFITGASSGIGQALAREYARQGATLGLVARRTDALQAFAARLPKAA---R-------VSVYAADVRDADALAAAAADF 72 (257)
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcccCC---e-------eEEEEcCCCCHHHHHHHHHHH
Confidence 567777775443 234455569999999998876655444332211 1 27888888764
Q ss_pred ---CCCccEEEEcccccc
Q 020710 217 ---DGKYDTVVCLDVLIH 231 (322)
Q Consensus 217 ---~~~fD~V~~~~~l~~ 231 (322)
.+..|+++.+....+
T Consensus 73 ~~~~g~id~lv~~ag~~~ 90 (257)
T PRK07024 73 IAAHGLPDVVIANAGISV 90 (257)
T ss_pred HHhCCCCCEEEECCCcCC
Confidence 256899998776543
|
|
| >TIGR01915 npdG NADPH-dependent F420 reductase | Back alignment and domain information |
|---|
Probab=81.24 E-value=15 Score=31.42 Aligned_cols=95 Identities=24% Similarity=0.218 Sum_probs=50.9
Q ss_pred eEEEEC-CCc-c-cchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHh-hhccCCCCCCCCCceEEcccccCCCCccEEEEc
Q 020710 151 AVCDAG-CGT-G-SLAIPLAKQGAIVSASDISAAMVAEARKKAEEE-LLADNGGEAPVMPKFEVKDLESLDGKYDTVVCL 226 (322)
Q Consensus 151 ~VLDvG-cG~-G-~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~-~~~~~~~~~~~~~~~~~~d~~~~~~~fD~V~~~ 226 (322)
+|.=|| +|. | .++..|++.|.+|+..+.+++.++...+..... +... + .......+..+.....|+|+..
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g-~-----~~~~~~~~~~ea~~~aDvVila 75 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEELGHGG-S-----DIKVTGADNAEAAKRADVVILA 75 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhhccccC-C-----CceEEEeChHHHHhcCCEEEEE
Confidence 467786 663 3 355666677889999999887765554432211 0000 0 0012222322223467988864
Q ss_pred ccccccCcchHHHHHHHHHhccCCeEEEEE
Q 020710 227 DVLIHYPQSKADGMIAHLASLAEKRLILSF 256 (322)
Q Consensus 227 ~~l~~~~~~~~~~~l~~l~~~~~~~~il~~ 256 (322)
++......+++.+...+.+..++++
T Consensus 76 -----vp~~~~~~~l~~l~~~l~~~vvI~~ 100 (219)
T TIGR01915 76 -----VPWDHVLKTLESLRDELSGKLVISP 100 (219)
T ss_pred -----CCHHHHHHHHHHHHHhccCCEEEEe
Confidence 3443355666666554445566655
|
This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase. |
| >PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=81.21 E-value=10 Score=32.83 Aligned_cols=73 Identities=27% Similarity=0.196 Sum_probs=47.9
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
.+++||-.|++.|. +...|+++|.+++.++.+...++.........+.. +.++..|+.+.
T Consensus 10 ~~k~vlVtG~s~gIG~~la~~l~~~G~~vv~~~r~~~~~~~~~~~l~~~~~~---------~~~~~~D~~~~~~i~~~~~ 80 (255)
T PRK06113 10 DGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQ---------AFACRCDITSEQELSALAD 80 (255)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCc---------EEEEEccCCCHHHHHHHHH
Confidence 36789999977654 23445566999999998877766554444332211 15677787654
Q ss_pred -----CCCccEEEEcccc
Q 020710 217 -----DGKYDTVVCLDVL 229 (322)
Q Consensus 217 -----~~~fD~V~~~~~l 229 (322)
.+..|.|+.+...
T Consensus 81 ~~~~~~~~~d~li~~ag~ 98 (255)
T PRK06113 81 FALSKLGKVDILVNNAGG 98 (255)
T ss_pred HHHHHcCCCCEEEECCCC
Confidence 2578999987654
|
|
| >PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=81.05 E-value=29 Score=30.01 Aligned_cols=71 Identities=25% Similarity=0.201 Sum_probs=43.6
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
+++++|=.|++.|. .+..|+++|++|+.+|.++. .+...+.....+.. +.++..|+.+.
T Consensus 7 ~~k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~~~-~~~~~~~~~~~~~~---------~~~~~~D~~~~~~~~~~~~ 76 (260)
T PRK12823 7 AGKVVVVTGAAQGIGRGVALRAAAEGARVVLVDRSEL-VHEVAAELRAAGGE---------ALALTADLETYAGAQAAMA 76 (260)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCchH-HHHHHHHHHhcCCe---------EEEEEEeCCCHHHHHHHHH
Confidence 35678888876544 34445566999999998764 22233333222211 15677787663
Q ss_pred -----CCCccEEEEccc
Q 020710 217 -----DGKYDTVVCLDV 228 (322)
Q Consensus 217 -----~~~fD~V~~~~~ 228 (322)
.+..|+++.+..
T Consensus 77 ~~~~~~~~id~lv~nAg 93 (260)
T PRK12823 77 AAVEAFGRIDVLINNVG 93 (260)
T ss_pred HHHHHcCCCeEEEECCc
Confidence 257899987764
|
|
| >COG0863 DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=81.02 E-value=5.1 Score=35.81 Aligned_cols=49 Identities=29% Similarity=0.330 Sum_probs=43.7
Q ss_pred CCCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhh
Q 020710 146 SLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEEL 194 (322)
Q Consensus 146 ~~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~ 194 (322)
..++..|||.-+|+|..+......|-..+|+|+++.-++.+.++.....
T Consensus 220 s~~~diVlDpf~GsGtt~~aa~~~~r~~ig~e~~~~y~~~~~~r~~~~~ 268 (302)
T COG0863 220 SFPGDIVLDPFAGSGTTGIAAKNLGRRFIGIEINPEYVEVALKRLQEGL 268 (302)
T ss_pred CCCCCEEeecCCCCChHHHHHHHcCCceEEEecCHHHHHHHHHHHHhhc
Confidence 3468999999999999999888889999999999999999999987643
|
|
| >cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=81.01 E-value=13 Score=29.47 Aligned_cols=73 Identities=22% Similarity=0.187 Sum_probs=42.4
Q ss_pred CCCeEEEECCCc--ccchHHHHhcC-CEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccCCCCccEEE
Q 020710 148 KGIAVCDAGCGT--GSLAIPLAKQG-AIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESLDGKYDTVV 224 (322)
Q Consensus 148 ~~~~VLDvGcG~--G~~~~~la~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~fD~V~ 224 (322)
++.+|+-+|||. ......+.+.+ .+|+.+|.+++..+...+....... .....|..+.-...|+|+
T Consensus 18 ~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~Dvvi 86 (155)
T cd01065 18 KGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGI-----------AIAYLDLEELLAEADLII 86 (155)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhccc-----------ceeecchhhccccCCEEE
Confidence 467899999973 22334444554 6799999988766554433322100 122334333346789999
Q ss_pred Ecccccc
Q 020710 225 CLDVLIH 231 (322)
Q Consensus 225 ~~~~l~~ 231 (322)
++-....
T Consensus 87 ~~~~~~~ 93 (155)
T cd01065 87 NTTPVGM 93 (155)
T ss_pred eCcCCCC
Confidence 8765443
|
Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann |
| >PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=80.96 E-value=9.9 Score=29.64 Aligned_cols=90 Identities=23% Similarity=0.204 Sum_probs=47.6
Q ss_pred CCCeEEEECCCc-cc-chHHHHhcCCEEEEEe-CCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccCCCCccEEE
Q 020710 148 KGIAVCDAGCGT-GS-LAIPLAKQGAIVSASD-ISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESLDGKYDTVV 224 (322)
Q Consensus 148 ~~~~VLDvGcG~-G~-~~~~la~~~~~v~gvD-~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~fD~V~ 224 (322)
+..+|-=||+|. |. ++..|.+.|..|.++- .++...+.+.+... .....+..+.....|+|+
T Consensus 9 ~~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~---------------~~~~~~~~~~~~~aDlv~ 73 (127)
T PF10727_consen 9 ARLKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAFIG---------------AGAILDLEEILRDADLVF 73 (127)
T ss_dssp ---EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--T---------------T-----TTGGGCC-SEEE
T ss_pred CccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCcccccccccccc---------------cccccccccccccCCEEE
Confidence 467899999984 33 3455556699998885 33323233322211 122334445456789999
Q ss_pred EcccccccCcchHHHHHHHHHhc--cCCeEEEEEC
Q 020710 225 CLDVLIHYPQSKADGMIAHLASL--AEKRLILSFA 257 (322)
Q Consensus 225 ~~~~l~~~~~~~~~~~l~~l~~~--~~~~~il~~~ 257 (322)
. -.||+.+..+.+.|... ..++-++...
T Consensus 74 i-----avpDdaI~~va~~La~~~~~~~g~iVvHt 103 (127)
T PF10727_consen 74 I-----AVPDDAIAEVAEQLAQYGAWRPGQIVVHT 103 (127)
T ss_dssp E------S-CCHHHHHHHHHHCC--S-TT-EEEES
T ss_pred E-----EechHHHHHHHHHHHHhccCCCCcEEEEC
Confidence 5 68888889999999875 4445444433
|
This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A. |
| >PRK07791 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=80.92 E-value=13 Score=33.13 Aligned_cols=74 Identities=22% Similarity=0.212 Sum_probs=46.2
Q ss_pred CCCeEEEECCCcccc---hHHHHhcCCEEEEEeCCH---------HHHHHHHHHhHHhhhccCCCCCCCCCceEEccccc
Q 020710 148 KGIAVCDAGCGTGSL---AIPLAKQGAIVSASDISA---------AMVAEARKKAEEELLADNGGEAPVMPKFEVKDLES 215 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~---~~~la~~~~~v~gvD~s~---------~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 215 (322)
+++++|-.|++.|.- +..|++.|++|+.+|.+. ..++...+.+...+.. +.++..|+.+
T Consensus 5 ~~k~~lITGas~GIG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~Dv~~ 75 (286)
T PRK07791 5 DGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGGE---------AVANGDDIAD 75 (286)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHhcCCc---------eEEEeCCCCC
Confidence 467899999877653 344566799998888764 4444333333322211 1566778765
Q ss_pred C-------------CCCccEEEEccccc
Q 020710 216 L-------------DGKYDTVVCLDVLI 230 (322)
Q Consensus 216 ~-------------~~~fD~V~~~~~l~ 230 (322)
. -+..|.++.+..+.
T Consensus 76 ~~~v~~~~~~~~~~~g~id~lv~nAG~~ 103 (286)
T PRK07791 76 WDGAANLVDAAVETFGGLDVLVNNAGIL 103 (286)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEECCCCC
Confidence 3 26789999876653
|
|
| >TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=80.81 E-value=12 Score=32.03 Aligned_cols=72 Identities=17% Similarity=0.105 Sum_probs=45.7
Q ss_pred CCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC---------
Q 020710 149 GIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL--------- 216 (322)
Q Consensus 149 ~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--------- 216 (322)
+.++|-.|++.|. ++..|++.|++|+.++.+....+...+.....+.. +.++.+|+.+.
T Consensus 3 ~~~ilItGas~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~---------~~~~~~d~~~~~~~~~~~~~ 73 (250)
T TIGR03206 3 DKTAIVTGGGGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAKGGN---------AQAFACDITDRDSVDTAVAA 73 (250)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcCCc---------EEEEEcCCCCHHHHHHHHHH
Confidence 5678888865433 23344556899999999887666555444332211 26788887653
Q ss_pred ----CCCccEEEEcccc
Q 020710 217 ----DGKYDTVVCLDVL 229 (322)
Q Consensus 217 ----~~~fD~V~~~~~l 229 (322)
.+..|+|+.+...
T Consensus 74 ~~~~~~~~d~vi~~ag~ 90 (250)
T TIGR03206 74 AEQALGPVDVLVNNAGW 90 (250)
T ss_pred HHHHcCCCCEEEECCCC
Confidence 2468988877654
|
Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate. |
| >PRK12829 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=80.80 E-value=11 Score=32.76 Aligned_cols=70 Identities=23% Similarity=0.276 Sum_probs=45.7
Q ss_pred CCCeEEEECCCcccchHHH----HhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-------
Q 020710 148 KGIAVCDAGCGTGSLAIPL----AKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~l----a~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~------- 216 (322)
+++++|-.|++ |..+..+ +++|++|++++-+++..+...+..... + +.++..|+.+.
T Consensus 10 ~~~~vlItGa~-g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~----~-------~~~~~~D~~~~~~~~~~~ 77 (264)
T PRK12829 10 DGLRVLVTGGA-SGIGRAIAEAFAEAGARVHVCDVSEAALAATAARLPGA----K-------VTATVADVADPAQVERVF 77 (264)
T ss_pred CCCEEEEeCCC-CcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcC----c-------eEEEEccCCCHHHHHHHH
Confidence 56789988876 4444444 445999999999877665444333221 1 16677787654
Q ss_pred ------CCCccEEEEcccc
Q 020710 217 ------DGKYDTVVCLDVL 229 (322)
Q Consensus 217 ------~~~fD~V~~~~~l 229 (322)
.+..|.|+.+...
T Consensus 78 ~~~~~~~~~~d~vi~~ag~ 96 (264)
T PRK12829 78 DTAVERFGGLDVLVNNAGI 96 (264)
T ss_pred HHHHHHhCCCCEEEECCCC
Confidence 1578999987654
|
|
| >PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=80.74 E-value=4.1 Score=31.24 Aligned_cols=32 Identities=44% Similarity=0.503 Sum_probs=26.5
Q ss_pred CcccchHHHHhc-CCEEEEEeCCHHHHHHHHHH
Q 020710 158 GTGSLAIPLAKQ-GAIVSASDISAAMVAEARKK 189 (322)
Q Consensus 158 G~G~~~~~la~~-~~~v~gvD~s~~~l~~a~~~ 189 (322)
|.|.++..+++. |++|+++|.++.-++.+++.
T Consensus 1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~~ 33 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGAKVIATDRSEEKLELAKEL 33 (130)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT
T ss_pred ChHHHHHHHHHHcCCEEEEEECCHHHHHHHHhh
Confidence 457788888877 99999999999988887654
|
1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: |
| >PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=80.73 E-value=11 Score=32.30 Aligned_cols=71 Identities=14% Similarity=0.136 Sum_probs=45.4
Q ss_pred CCeEEEECCCcccchHHH----HhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 149 GIAVCDAGCGTGSLAIPL----AKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 149 ~~~VLDvGcG~G~~~~~l----a~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
+.++|-.|+ +|.++..+ +++|++|+.++.++.-.+...+.....+. + +.++..|+.+.
T Consensus 7 ~~~vlVtG~-sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~--~-------~~~~~~D~~~~~~~~~~~~ 76 (239)
T PRK07666 7 GKNALITGA-GRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAYGV--K-------VVIATADVSDYEEVTAAIE 76 (239)
T ss_pred CCEEEEEcC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCC--e-------EEEEECCCCCHHHHHHHHH
Confidence 567888885 55555544 45599999999987655544333332221 1 26778887654
Q ss_pred -----CCCccEEEEcccc
Q 020710 217 -----DGKYDTVVCLDVL 229 (322)
Q Consensus 217 -----~~~fD~V~~~~~l 229 (322)
.+..|.|+++...
T Consensus 77 ~~~~~~~~id~vi~~ag~ 94 (239)
T PRK07666 77 QLKNELGSIDILINNAGI 94 (239)
T ss_pred HHHHHcCCccEEEEcCcc
Confidence 1478999987654
|
|
| >PRK07326 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=80.65 E-value=11 Score=31.97 Aligned_cols=71 Identities=15% Similarity=0.129 Sum_probs=45.6
Q ss_pred CCeEEEECCCcccchHHHH----hcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 149 GIAVCDAGCGTGSLAIPLA----KQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 149 ~~~VLDvGcG~G~~~~~la----~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
+.+||-.|+ +|.++..++ ++|++|++++.++...+...+..... .+ +.++.+|+.+.
T Consensus 6 ~~~ilItGa-tg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~---~~-------~~~~~~D~~~~~~~~~~~~ 74 (237)
T PRK07326 6 GKVALITGG-SKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNK---GN-------VLGLAADVRDEADVQRAVD 74 (237)
T ss_pred CCEEEEECC-CCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhcc---Cc-------EEEEEccCCCHHHHHHHHH
Confidence 567888885 555554444 45899999998886655554443321 11 26778887654
Q ss_pred -----CCCccEEEEccccc
Q 020710 217 -----DGKYDTVVCLDVLI 230 (322)
Q Consensus 217 -----~~~fD~V~~~~~l~ 230 (322)
.+..|.|+.+....
T Consensus 75 ~~~~~~~~~d~vi~~ag~~ 93 (237)
T PRK07326 75 AIVAAFGGLDVLIANAGVG 93 (237)
T ss_pred HHHHHcCCCCEEEECCCCC
Confidence 14789999776543
|
|
| >PRK09072 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=80.49 E-value=12 Score=32.55 Aligned_cols=74 Identities=23% Similarity=0.180 Sum_probs=48.5
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
++.++|=.|++.|. ++..|+++|++|++++.+++-++...+.. ..+ .+ +.++..|+.+.
T Consensus 4 ~~~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-~~~--~~-------~~~~~~D~~d~~~~~~~~~ 73 (263)
T PRK09072 4 KDKRVLLTGASGGIGQALAEALAAAGARLLLVGRNAEKLEALAARL-PYP--GR-------HRWVVADLTSEAGREAVLA 73 (263)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH-hcC--Cc-------eEEEEccCCCHHHHHHHHH
Confidence 35678888876544 34455667999999999887666554443 111 11 26778887664
Q ss_pred ----CCCccEEEEcccccc
Q 020710 217 ----DGKYDTVVCLDVLIH 231 (322)
Q Consensus 217 ----~~~fD~V~~~~~l~~ 231 (322)
.+..|.|+.+....+
T Consensus 74 ~~~~~~~id~lv~~ag~~~ 92 (263)
T PRK09072 74 RAREMGGINVLINNAGVNH 92 (263)
T ss_pred HHHhcCCCCEEEECCCCCC
Confidence 156899998866543
|
|
| >PRK08277 D-mannonate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=80.40 E-value=12 Score=32.97 Aligned_cols=73 Identities=19% Similarity=0.054 Sum_probs=47.2
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
+++++|=.|++.|. ....|++.|++|+.++.+++..+...+.....+.. +.++..|+.+.
T Consensus 9 ~~k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~---------~~~~~~Dl~~~~~v~~~~~ 79 (278)
T PRK08277 9 KGKVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKAAGGE---------ALAVKADVLDKESLEQARQ 79 (278)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCe---------EEEEECCCCCHHHHHHHHH
Confidence 35678888876544 23445566999999999877665554444332211 16778887654
Q ss_pred -----CCCccEEEEcccc
Q 020710 217 -----DGKYDTVVCLDVL 229 (322)
Q Consensus 217 -----~~~fD~V~~~~~l 229 (322)
-+..|+++.+...
T Consensus 80 ~~~~~~g~id~li~~ag~ 97 (278)
T PRK08277 80 QILEDFGPCDILINGAGG 97 (278)
T ss_pred HHHHHcCCCCEEEECCCC
Confidence 2578999987654
|
|
| >PRK07774 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=80.34 E-value=11 Score=32.48 Aligned_cols=72 Identities=19% Similarity=0.169 Sum_probs=45.4
Q ss_pred CCCeEEEECCCcccchHHH----HhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-------
Q 020710 148 KGIAVCDAGCGTGSLAIPL----AKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~l----a~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~------- 216 (322)
+++++|=.|+ +|..+..+ +++|.+|+.++-++...+...+...+.+.. ..++..|+.+.
T Consensus 5 ~~k~vlItGa-sg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~---------~~~~~~Dl~~~~~~~~~~ 74 (250)
T PRK07774 5 DDKVAIVTGA-AGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVADGGT---------AIAVQVDVSDPDSAKAMA 74 (250)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCc---------EEEEEcCCCCHHHHHHHH
Confidence 3567888874 44444444 455999999998876655544443322211 15677887664
Q ss_pred ------CCCccEEEEcccc
Q 020710 217 ------DGKYDTVVCLDVL 229 (322)
Q Consensus 217 ------~~~fD~V~~~~~l 229 (322)
.+..|+|+.+...
T Consensus 75 ~~~~~~~~~id~vi~~ag~ 93 (250)
T PRK07774 75 DATVSAFGGIDYLVNNAAI 93 (250)
T ss_pred HHHHHHhCCCCEEEECCCC
Confidence 1568999987765
|
|
| >PRK08251 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=80.29 E-value=13 Score=31.92 Aligned_cols=74 Identities=12% Similarity=0.080 Sum_probs=46.9
Q ss_pred CCeEEEECCCcccchHH----HHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 149 GIAVCDAGCGTGSLAIP----LAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 149 ~~~VLDvGcG~G~~~~~----la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
++++|-.|+ +|.++.. |++.|++|+.++.++..++...+.........+ +.++.+|+.+.
T Consensus 2 ~k~vlItGa-s~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~-------~~~~~~D~~~~~~~~~~~~ 73 (248)
T PRK08251 2 RQKILITGA-SSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARYPGIK-------VAVAALDVNDHDQVFEVFA 73 (248)
T ss_pred CCEEEEECC-CCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCce-------EEEEEcCCCCHHHHHHHHH
Confidence 356887775 4554444 445589999999988777665554433211111 26778887764
Q ss_pred -----CCCccEEEEccccc
Q 020710 217 -----DGKYDTVVCLDVLI 230 (322)
Q Consensus 217 -----~~~fD~V~~~~~l~ 230 (322)
.+..|.|+.+..+.
T Consensus 74 ~~~~~~~~id~vi~~ag~~ 92 (248)
T PRK08251 74 EFRDELGGLDRVIVNAGIG 92 (248)
T ss_pred HHHHHcCCCCEEEECCCcC
Confidence 25689999876553
|
|
| >PRK05650 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=80.01 E-value=12 Score=32.87 Aligned_cols=71 Identities=20% Similarity=0.169 Sum_probs=44.8
Q ss_pred eEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-----------
Q 020710 151 AVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL----------- 216 (322)
Q Consensus 151 ~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~----------- 216 (322)
+||-.|+..|. ++..|++.|.+|+.++.+..-++...+.....+.. +.++.+|+.+.
T Consensus 2 ~vlVtGasggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~---------~~~~~~D~~~~~~~~~~~~~i~ 72 (270)
T PRK05650 2 RVMITGAASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLREAGGD---------GFYQRCDVRDYSQLTALAQACE 72 (270)
T ss_pred EEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCc---------eEEEEccCCCHHHHHHHHHHHH
Confidence 57767764433 23444556999999999877666554444332221 26778887654
Q ss_pred --CCCccEEEEccccc
Q 020710 217 --DGKYDTVVCLDVLI 230 (322)
Q Consensus 217 --~~~fD~V~~~~~l~ 230 (322)
.+.+|.++.+....
T Consensus 73 ~~~~~id~lI~~ag~~ 88 (270)
T PRK05650 73 EKWGGIDVIVNNAGVA 88 (270)
T ss_pred HHcCCCCEEEECCCCC
Confidence 25799999876653
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227 | Back alignment and structure |
|---|
Score = 84.6 bits (209), Expect = 2e-19
Identities = 31/132 (23%), Positives = 55/132 (41%), Gaps = 19/132 (14%)
Query: 105 GFQRWKKIYGETDDVNRVQLDIRLGHSKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAI 164
GF+ + +++ D+N + R+ +T+E + + V D CG G +
Sbjct: 2 GFKEYYRVFPTYTDINSQEYRSRI---ETLEPLLMKYMKKRGK----VLDLACGVGGFSF 54
Query: 165 PLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL---DGKYD 221
L G V DIS M+ +AR+ A+ +F V D L D +D
Sbjct: 55 LLEDYGFEVVGVDISEDMIRKAREYAKSRESN---------VEFIVGDARKLSFEDKTFD 105
Query: 222 TVVCLDVLIHYP 233
V+ +D ++H+
Sbjct: 106 YVIFIDSIVHFE 117
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220 | Back alignment and structure |
|---|
Score = 83.4 bits (206), Expect = 5e-19
Identities = 39/232 (16%), Positives = 75/232 (32%), Gaps = 36/232 (15%)
Query: 97 VREYFNNSGFQRWKKIYGETDDVNRVQLDIRLGHSKTVENTMQMLNDEGSLKGIAVCDAG 156
F+ W Y D + + + + + + +L D + V + G
Sbjct: 5 FNGLFD-----EWAHTY---DSFVQGED---IQYKEVFAHYEDILEDVVNKSFGNVLEFG 53
Query: 157 CGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL 216
GTG+L L G V + S M A++K +E D S
Sbjct: 54 VGTGNLTNKLLLAGRTVYGIEPSREMRMIAKEKLPKEF------------SITEGDFLSF 101
Query: 217 --DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEK--RLILS---FAPKTFYYDLLKRV 269
DT+V H + + IA + L K +++ + FA + Y ++
Sbjct: 102 EVPTSIDTIVSTYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTIFADQDAYDKTVEAA 161
Query: 270 GE--LFPGPSKATRAYLHAEADVERALQKVGWKIRKRGLITTQFYFARLVEA 319
+ + Y ++ + G+ + L +F ++EA
Sbjct: 162 KQRGFHQLANDLQTEYYTRIPVMQTIFENNGFHVTFTRL----NHFVWVMEA 209
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203 | Back alignment and structure |
|---|
Score = 82.2 bits (203), Expect = 7e-19
Identities = 28/158 (17%), Positives = 50/158 (31%), Gaps = 28/158 (17%)
Query: 152 VCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVK 211
+ D G GTG LA G + + + +V AR+ F
Sbjct: 45 ILDVGSGTGRWTGHLASLGHQIEGLEPATRLVELARQTHPS-------------VTFHHG 91
Query: 212 DLESL---DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEK--RLILSFAPKTFYYDLL 266
+ L ++ ++ LIH + + L E L++SF
Sbjct: 92 TITDLSDSPKRWAGLLAWYSLIHMGPGELPDALVALRMAVEDGGGLLMSF---------- 141
Query: 267 KRVGELFPGPSKATRAYLHAEADVERALQKVGWKIRKR 304
L P AY ++ +AL+ G+++
Sbjct: 142 FSGPSLEPMYHPVATAYRWPLPELAQALETAGFQVTSS 179
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Length = 218 | Back alignment and structure |
|---|
Score = 79.2 bits (195), Expect = 1e-17
Identities = 31/180 (17%), Positives = 55/180 (30%), Gaps = 26/180 (14%)
Query: 154 DAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDL 213
+ GTG L+ V+A D SA M+AEA + + + +F +DL
Sbjct: 52 ELASGTGYWTRHLSGLADRVTALDGSAEMIAEAGRHGLDNV------------EFRQQDL 99
Query: 214 ESL--DGKYDTVVCLDVLIHYPQSKADGMIAHLA-SLAEK-RLILS--------FAPKTF 261
D ++D V L H P + + + ++A + +
Sbjct: 100 FDWTPDRQWDAVFFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDVTDHERRLEQQDD 159
Query: 262 YYDLLKRVGELFPGPSKATRAYLHAEADVERALQKVGWKIRKRGLITTQFYFARLVEAVP 321
+ L G S + A++ L +GW + P
Sbjct: 160 SEPEVAVRRTLQDGRSFRIVKVFRSPAELTERLTALGWSCSVD--EVHPGFLYATCRPGP 217
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195 | Back alignment and structure |
|---|
Score = 77.5 bits (191), Expect = 3e-17
Identities = 26/119 (21%), Positives = 48/119 (40%), Gaps = 23/119 (19%)
Query: 148 KGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPK 207
+G + DAGCG G + L+KQG V +D+ ++ A++ E +
Sbjct: 46 RGAKILDAGCGQGRIGGYLSKQGHDVLGTDLDPILIDYAKQDFPE-------------AR 92
Query: 208 FEVKDLESL---DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEK-----RLILSFAP 258
+ V DL + +D +V ++ + DG LA++ R ++ F
Sbjct: 93 WVVGDLSVDQISETDFDLIVSAGNVMGFLA--EDGREPALANIHRALGADGRAVIGFGA 149
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} Length = 286 | Back alignment and structure |
|---|
Score = 78.9 bits (194), Expect = 5e-17
Identities = 31/205 (15%), Positives = 72/205 (35%), Gaps = 29/205 (14%)
Query: 107 QRWKKIYGETDDV------NRVQLDIRLGHSKTVENTMQMLNDEGSLKGIAVCDAGCGTG 160
Q W ++ +DD+ + D T +++ + V D GCG G
Sbjct: 73 QAWHRVEALSDDLECTLGFYCKKEDYFSKKYNTTAIHGDVVDAAKIISPCKVLDLGCGQG 132
Query: 161 SLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLE--SLDG 218
++ L+ G V++ D + +A + E+E L + + D+ ++
Sbjct: 133 RNSLYLSLLGYDVTSWDHNENSIAFLNETKEKENL-------NI--STALYDINAANIQE 183
Query: 219 KYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSK 278
YD +V V + + + +I ++ + + + P P
Sbjct: 184 NYDFIVSTVVFMFLNRERVPSIIKNMKEHT--------NVGGYNLIVAAMSTDDVPCPLP 235
Query: 279 ATRAYLHAEADVERALQKVGWKIRK 303
++ AE +++ + W+ +
Sbjct: 236 --FSFTFAENELKEYYK--DWEFLE 256
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Length = 199 | Back alignment and structure |
|---|
Score = 76.4 bits (188), Expect = 9e-17
Identities = 35/159 (22%), Positives = 59/159 (37%), Gaps = 26/159 (16%)
Query: 147 LKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMP 206
+K D GCG G ++ LA G V A D +A +A + E L +
Sbjct: 31 VKPGKTLDLGCGNGRNSLYLAANGYDVDAWDKNAMSIANVERIKSIENLDN--------L 82
Query: 207 KFEVKDLESL--DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEK--RLILSFAPKTFY 262
V DL +L D +YD ++ VL+ G+IA++ + ++ A T
Sbjct: 83 HTRVVDLNNLTFDRQYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDT-- 140
Query: 263 YDLLKRVGELFPGPSKATRAYLHAEADVERALQKVGWKI 301
+P + E ++ R + GW+
Sbjct: 141 --------ADYPCTVG--FPFAFKEGELRRYYE--GWER 167
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 Length = 260 | Back alignment and structure |
|---|
Score = 77.2 bits (190), Expect = 1e-16
Identities = 42/245 (17%), Positives = 83/245 (33%), Gaps = 49/245 (20%)
Query: 93 DKEVVREYFNNSGFQRWKKIYGETDDVNRVQLDIRLGHSKTVENTMQMLNDEGSLKGIAV 152
K E+++ R + Y D + +L H + L V
Sbjct: 13 MKLRSWEFYD-----RIARAY---DSMYET-PKWKLYHRLIGSFLEEYLK-----NPCRV 58
Query: 153 CDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKD 212
D G GTG ++ L ++G V D S M+ AR+K + ++ + P F
Sbjct: 59 LDLGGGTGKWSLFLQERGFEVVLVDPSKEMLEVAREKGVKNVVEAKAEDLP----FP--- 111
Query: 213 LESLDGKYDTVVCLDVLIHYPQS------------KADGMIAHLASLAEKRLILSFAPKT 260
G ++ V+ L ++ Y ++ DG++ +A++ L +
Sbjct: 112 ----SGAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLL--IATVDNFYTFLQQMIEK 165
Query: 261 FYYDLLKRVGELFPGPSKATRAYLHA------EADVERALQKVGWKIRKRGLITTQFYFA 314
+D + R + T ++ + D + V RG+ ++
Sbjct: 166 DAWDQITRFLKTQTTSVGTTLFSFNSYAFKPEDLDSLEGFETVDI----RGIGVMEYPDE 221
Query: 315 RLVEA 319
R+ E
Sbjct: 222 RISER 226
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242 | Back alignment and structure |
|---|
Score = 76.5 bits (188), Expect = 2e-16
Identities = 33/208 (15%), Positives = 69/208 (33%), Gaps = 38/208 (18%)
Query: 106 FQRWKKIYGETDDVNRVQ-LDIRLGHSKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAI 164
+ +K + D + + +T+ ++ K V D GCG G
Sbjct: 13 HESAEKKW---DSSAEFWNQNSQEMWDSGSRSTIIPFFEQYVKKEAEVLDVGCGDGYGTY 69
Query: 165 PLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL---DGKYD 221
L++ G DIS M+ + +++ E L F DL SL + +++
Sbjct: 70 KLSRTGYKAVGVDISEVMIQKGKERGEGPDL-----------SFIKGDLSSLPFENEQFE 118
Query: 222 TVVCLDVLIHYPQSKADGMIAHLASLAE--------KRLILSFAPKTFYYDLLKRVGELF 273
++ ++ L + L +L E ++ T L+
Sbjct: 119 AIMAINSLEWTEE--------PLRALNEIKRVLKSDGYACIAILGPTA-KPRENSYPRLY 169
Query: 274 PGPSKATRAYLHAEADVERALQKVGWKI 301
K + E+ +++ G+K+
Sbjct: 170 ---GKDVVCNTMMPWEFEQLVKEQGFKV 194
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 Length = 246 | Back alignment and structure |
|---|
Score = 76.3 bits (188), Expect = 2e-16
Identities = 23/100 (23%), Positives = 42/100 (42%), Gaps = 12/100 (12%)
Query: 152 VCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVK 211
D CGTG+L L + A D+S M++EA K + L P+ +
Sbjct: 41 YLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGLK---------PRLACQ 91
Query: 212 DLESLD--GKYDTVVCLDVLIHYPQSKADGMIAHLASLAE 249
D+ +L+ K+D + C +Y D + + +++
Sbjct: 92 DISNLNINRKFDLITCCLDSTNYIIDSDD-LKKYFKAVSN 130
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} Length = 239 | Back alignment and structure |
|---|
Score = 75.2 bits (185), Expect = 4e-16
Identities = 21/104 (20%), Positives = 41/104 (39%), Gaps = 16/104 (15%)
Query: 148 KGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPK 207
+ ++ D CGTG+ K+ + ++S M+ ARK+ +
Sbjct: 40 EASSLLDVACGTGTHLEHFTKEFGDTAGLELSEDMLTHARKRLPDA-------------T 86
Query: 208 FEVKDLESLD--GKYDTVVCLDVLIHYPQSKADGMIAHLASLAE 249
D+ K+ VV + + Y ++ + + A +AS AE
Sbjct: 87 LHQGDMRDFRLGRKFSAVVSMFSSVGYLKTTEE-LGAAVASFAE 129
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* Length = 293 | Back alignment and structure |
|---|
Score = 75.8 bits (186), Expect = 5e-16
Identities = 45/247 (18%), Positives = 78/247 (31%), Gaps = 37/247 (14%)
Query: 77 DPERRRQLQAEEVGGGDKEVVREYFNNSGFQRWKKIYGETDDVNRVQLDIRLGHSKTVEN 136
R R +G + + +Y + + W+ G D +R
Sbjct: 4 SVYRTR-----SLGVAAEGIPDQYADGEAARVWQLYIG--DTRSRTAEYKAW-------- 48
Query: 137 TMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLA 196
+ +L G + V D CGTG +I L ++G V++ D S M+ A K+
Sbjct: 49 LLGLLRQHGCHR---VLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKE 105
Query: 197 DNG--GEAPVMPKFEVKDLESLDGKYDTVVCL-DVLIHYPQSKADG--MIAHLASLAEK- 250
+ +D V+CL + H P SK D L ++A
Sbjct: 106 PAFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMV 165
Query: 251 ----RLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQKVGWKIRKRGL 306
L++ YD + G PG + + + V K +
Sbjct: 166 RPGGLLVIDH----RNYDYILSTGCAPPG-----KNIYYKSDLTKDITTSVLTVNNKAHM 216
Query: 307 ITTQFYF 313
+T +
Sbjct: 217 VTLDYTV 223
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* Length = 299 | Back alignment and structure |
|---|
Score = 74.9 bits (184), Expect = 1e-15
Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 7/83 (8%)
Query: 152 VCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVK 211
V + G G L P G V+A ++S +++A RK+ E +
Sbjct: 86 VLELAAGMGRLTFPFLDLGWEVTALELSTSVLAAFRKRLAEA-----PADVRDRCTLVQG 140
Query: 212 DLE--SLDGKYDTVVCLDVLIHY 232
D+ +LD ++ TVV I+
Sbjct: 141 DMSAFALDKRFGTVVISSGSINE 163
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 252 | Back alignment and structure |
|---|
Score = 74.1 bits (182), Expect = 1e-15
Identities = 24/96 (25%), Positives = 41/96 (42%), Gaps = 11/96 (11%)
Query: 139 QMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADN 198
++ ++ + V D CGTG + LA++G V D+ M+ AR+KA+E L
Sbjct: 32 EIFKEDAKREVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKERNLK-- 89
Query: 199 GGEAPVMPKFEVKDLESLD--GKYDTVVCLDVLIHY 232
+F D+ + ++D V I Y
Sbjct: 90 -------IEFLQGDVLEIAFKNEFDAVTMFFSTIMY 118
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* Length = 263 | Back alignment and structure |
|---|
Score = 74.1 bits (182), Expect = 2e-15
Identities = 23/104 (22%), Positives = 39/104 (37%), Gaps = 16/104 (15%)
Query: 148 KGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPK 207
K ++ D CGTG LA V ++SA M+A AR++ +
Sbjct: 50 KAASLLDVACGTGMHLRHLADSFGTVEGLELSADMLAIARRRNPD-------------AV 96
Query: 208 FEVKDLESLD--GKYDTVVCLDVLIHYPQSKADGMIAHLASLAE 249
D+ ++ V C+ I + +A+ + A L A
Sbjct: 97 LHHGDMRDFSLGRRFSAVTCMFSSIGHLAGQAE-LDAALERFAA 139
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Length = 227 | Back alignment and structure |
|---|
Score = 73.3 bits (180), Expect = 2e-15
Identities = 34/223 (15%), Positives = 64/223 (28%), Gaps = 40/223 (17%)
Query: 93 DKEVVREYFNNSGFQRWKKIYGETDDVNRVQLDIRLGHSKTVENTMQMLNDEGSLKGIAV 152
++ + + ++ + Q W +R Q+ + +L + V
Sbjct: 9 PEDALLDSWHQN-AQAWIDAVRHGAIESRRQVTDQA-----------ILLAILGRQPERV 56
Query: 153 CDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKD 212
D GCG G L LA +G D +V AR G + +
Sbjct: 57 LDLGCGEGWLLRALADRGIEAVGVDGDRTLVDAARAA---------GAGEVHLASYAQLA 107
Query: 213 LESL--DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEK-----RLILS------FAPK 259
+ YD + L+H + L+++ L++ A
Sbjct: 108 EAKVPVGKDYDLICANFALLHQDIIEL------LSAMRTLLVPGGALVIQTLHPWSVADG 161
Query: 260 TFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQKVGWKIR 302
+ + F G + Y A AL G ++
Sbjct: 162 DYQDGWREESFAGFAGDWQPMPWYFRTLASWLNALDMAGLRLV 204
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Length = 211 | Back alignment and structure |
|---|
Score = 73.0 bits (179), Expect = 2e-15
Identities = 22/109 (20%), Positives = 37/109 (33%), Gaps = 18/109 (16%)
Query: 152 VCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVK 211
+ + GCG G A + G V A+D S + AEA ++
Sbjct: 47 ILELGCGAGYQAEAMLAAGFDVDATDGSPELAAEASRRLGRP--------------VRTM 92
Query: 212 DLESLD--GKYDTVVCLDVLIHYPQSKADGMIAHLASLAEK--RLILSF 256
LD YD V L+H P+ + ++ + + S+
Sbjct: 93 LFHQLDAIDAYDAVWAHACLLHVPRDELADVLKLIWRALKPGGLFYASY 141
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} Length = 230 | Back alignment and structure |
|---|
Score = 72.5 bits (178), Expect = 4e-15
Identities = 30/166 (18%), Positives = 62/166 (37%), Gaps = 24/166 (14%)
Query: 147 LKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMP 206
+ V D GC +G+L + + G VS + +A++K + +L D
Sbjct: 31 KEWKEVLDIGCSSGALGAAIKENGTRVSGIEAFPEAAEQAKEKLDHVVLGD--------- 81
Query: 207 KFEVKDLESLDGKYDTVVCLDVL--IHYPQSKADGMIAHLASLAEK--RLILS---FAPK 259
E D+ + ++D V+ DVL + P + +I + ++ ++ S +
Sbjct: 82 -IETMDMPYEEEQFDCVIFGDVLEHLFDPWA----VIEKVKPYIKQNGVILASIPNVSHI 136
Query: 260 TFYYDLLKRVGELFPGPSKATRAYLH--AEADVERALQKVGWKIRK 303
+ LL + ++ ++ R K G+ I K
Sbjct: 137 SVLAPLLAGNWTYTEYG-LLDKTHIRFFTFNEMLRMFLKAGYSISK 181
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} Length = 279 | Back alignment and structure |
|---|
Score = 72.1 bits (177), Expect = 1e-14
Identities = 38/182 (20%), Positives = 63/182 (34%), Gaps = 24/182 (13%)
Query: 148 KGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPK 207
G + D GCGTG L +A+ GA V +D +A M+ +AR+
Sbjct: 57 PGEFILDLGCGTGQLTEKIAQSGAEVLGTDNAATMIEKARQNYPH-------------LH 103
Query: 208 FEVKDLESL--DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEK--RLILSFAPKTFYY 263
F+V D + D D V +L + +A IA + + R + F K
Sbjct: 104 FDVADARNFRVDKPLDAVFSNAMLHWVKEPEA--AIASIHQALKSGGRFVAEFGGKGNIK 161
Query: 264 DLLKRVGELFP-----GPSKATRAYLHAEADVERALQKVGWKIRKRGLITTQFYFARLVE 318
+L+ + P Y + + L+K G+ + L A
Sbjct: 162 YILEALYNALETLGIHNPQALNPWYFPSIGEYVNILEKQGFDVTYAALFNRPTTLAEGEF 221
Query: 319 AV 320
+
Sbjct: 222 GM 223
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB: 2gh1_A Length = 284 | Back alignment and structure |
|---|
Score = 71.1 bits (174), Expect = 3e-14
Identities = 23/92 (25%), Positives = 37/92 (40%), Gaps = 14/92 (15%)
Query: 148 KGIAVCDAGCGTGSLAIPLAK---QGAIVSASDISAAMVAEARKKAEEELLADNGGEAPV 204
K + + D GCG G L + L +G+ + D ++AEAR+ P
Sbjct: 22 KPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFR---------LLPY 72
Query: 205 MPKFEVKDLESL--DGKYDTVVCLDVLIHYPQ 234
+F D + + KYD +C L+H
Sbjct: 73 DSEFLEGDATEIELNDKYDIAICHAFLLHMTT 104
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} Length = 235 | Back alignment and structure |
|---|
Score = 70.2 bits (172), Expect = 3e-14
Identities = 28/130 (21%), Positives = 50/130 (38%), Gaps = 21/130 (16%)
Query: 107 QRWKKIYGETDDVNRVQLDIRLGHSKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPL 166
W+K+ G+ + I + + + + D GCG+G +++ L
Sbjct: 4 SYWEKVSGKNIPSSLDLYPIIHNYLQ---------------EDDEILDIGCGSGKISLEL 48
Query: 167 AKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL---DGKYDTV 223
A +G V+ DI++ + A A L G +F+V++ SL D +D
Sbjct: 49 ASKGYSVTGIDINSEAIRLAETAARSPGLNQKTGGK---AEFKVENASSLSFHDSSFDFA 105
Query: 224 VCLDVLIHYP 233
V L P
Sbjct: 106 VMQAFLTSVP 115
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} Length = 243 | Back alignment and structure |
|---|
Score = 69.8 bits (171), Expect = 4e-14
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 12/93 (12%)
Query: 148 KGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPK 207
G + D GCGTG+ + LA V+ D+S M+ A++KA E
Sbjct: 33 PGKRIADIGCGTGTATLLLAD-HYEVTGVDLSEEMLEIAQEKAMETNRH---------VD 82
Query: 208 FEVKDLESLD--GKYDTVVCLDVLIHYPQSKAD 238
F V+D+ L+ D + L ++Y Q++AD
Sbjct: 83 FWVQDMRELELPEPVDAITILCDSLNYLQTEAD 115
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219 | Back alignment and structure |
|---|
Score = 69.4 bits (170), Expect = 4e-14
Identities = 27/141 (19%), Positives = 49/141 (34%), Gaps = 24/141 (17%)
Query: 97 VREYFNNSGFQRWKKIYGETDDVNRVQLDIRLGHSKTVENTMQMLNDEGSLKGIAVCDAG 156
++ F+ G + D++++ + EN + + D G
Sbjct: 5 NKKKFDKKGAKNM-------DEISKTLF--APIYPIIAENIINRFG----ITAGTCIDIG 51
Query: 157 CGTGSLAIPLAKQ-GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLES 215
G G+L+I LAKQ + A D S M A K + L D + D+ +
Sbjct: 52 SGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLNDR-------IQIVQGDVHN 104
Query: 216 L---DGKYDTVVCLDVLIHYP 233
+ D D +V + +
Sbjct: 105 IPIEDNYADLIVSRGSVFFWE 125
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253 | Back alignment and structure |
|---|
Score = 69.6 bits (170), Expect = 6e-14
Identities = 42/232 (18%), Positives = 73/232 (31%), Gaps = 53/232 (22%)
Query: 99 EYFNNSGFQRWKKIYGETDDVNRVQLDIRLGHSKTVENTMQMLNDEGSLKGIAVCDAGCG 158
+Y + F+++ ++ + + L +ML D V D GCG
Sbjct: 7 KYDDKHFFEQYSQMPRSKEGLKAAGEWHEL---------KKMLPD---FNQKTVLDLGCG 54
Query: 159 TGSLAIPLAKQGA-IVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL- 216
G I A+ GA V D+S M+ EA++K ++ +E K +E +
Sbjct: 55 FGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTTSPVV-----------CYEQKAIEDIA 103
Query: 217 --DGKYDTVVCLDVLIHYPQ-----------SKADGMIA----HLASLAEKR-------- 251
Y+ V+ L + K+ G H A+ R
Sbjct: 104 IEPDAYNVVLSSLALHYIASFDDICKKVYINLKSSGSFIFSVEHPVFTADGRQDWYTDET 163
Query: 252 LILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQKVGWKIRK 303
P Y++ R + Y + L K G++I
Sbjct: 164 GNKLHWPVDRYFNESMRTSHFLGEDV---QKYHRTVTTYIQTLLKNGFQINS 212
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170 | Back alignment and structure |
|---|
Score = 67.4 bits (165), Expect = 8e-14
Identities = 16/99 (16%), Positives = 32/99 (32%), Gaps = 13/99 (13%)
Query: 135 ENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEEL 194
E + L + K + D GCG G L + + DI+ + E ++K + +
Sbjct: 4 ERPEEYLPNIFEGKKGVIVDYGCGNGFYCKYLLEFATKLYCIDINVIALKEVKEKFDSVI 63
Query: 195 LADNGGEAPVMPKFEVKDLESLDGKYDTVVCLDVLIHYP 233
+ +P D D ++ +
Sbjct: 64 ---TLSDPKEIP----------DNSVDFILFANSFHDMD 89
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} Length = 245 | Back alignment and structure |
|---|
Score = 68.5 bits (167), Expect = 1e-13
Identities = 28/164 (17%), Positives = 54/164 (32%), Gaps = 10/164 (6%)
Query: 149 GIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKF 208
+ + D CG G+ L++ V D+S + + A K+ ++ + V +
Sbjct: 57 ELPLIDFACGNGTQTKFLSQFFPRVIGLDVSKSALEIAAKENTAANISYRLLDGLVPEQA 116
Query: 209 EVKDLESLDGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEK--RLILSF---APKTFYY 263
E D + H P K + + L L K + L F+
Sbjct: 117 AQIHSEIGD---ANIYMRTGFHHIPVEKRELLGQSLRILLGKQGAMYLIELGTGCIDFFN 173
Query: 264 DLLKRVGELFPGPSKATRAYL--HAEADVERALQKVGWKIRKRG 305
LL++ G+L + + L ++I +G
Sbjct: 174 SLLEKYGQLPYELLLVMEHGIRPGIFTAEDIELYFPDFEILSQG 217
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} Length = 235 | Back alignment and structure |
|---|
Score = 68.1 bits (166), Expect = 2e-13
Identities = 36/225 (16%), Positives = 60/225 (26%), Gaps = 31/225 (13%)
Query: 79 ERRRQLQAEEVGGGDKEVVREYFNNSGFQRWKKIYGETDDVNRVQLDIRLGHSKTVENTM 138
+ Q V +EV W+K + E +
Sbjct: 6 QNSDQSNGGNVIPTPEEVATFLHKTVEEGGWEKCWEEEITP---------WDQGRATPLI 56
Query: 139 QMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADN 198
L D SL GCG G + +A V DIS + +A+A + A+
Sbjct: 57 VHLVDTSSLPLGRALVPGCGGGHDVVAMASPERFVVGLDISESALAKANETYGSSPKAEY 116
Query: 199 GGEAPVMPKFEVKDLESLD--GKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSF 256
F +D+ + +D + + L
Sbjct: 117 -------FSFVKEDVFTWRPTELFDLIFDYVFFCAIEPEMRPAWAKSMYELL-------- 161
Query: 257 APKTFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQKVGWKI 301
P L+ + + GP Y + E L +G+K
Sbjct: 162 KPDGELITLMYPITDHVGGP-----PYKVDVSTFEEVLVPIGFKA 201
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234 | Back alignment and structure |
|---|
Score = 66.7 bits (163), Expect = 4e-13
Identities = 27/159 (16%), Positives = 49/159 (30%), Gaps = 27/159 (16%)
Query: 93 DKEVVREYFNNSGFQRWKKIYGETDDVNRVQLDIRLGHSKTVENTMQMLNDEGSLKGIAV 152
++ F+ Y D+ R + + + + +
Sbjct: 2 SLSEIKRKFD-----AVSGKY---DEQRRKFI---PCFDDFYG--VSVSIASVDTENPDI 48
Query: 153 CDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEV 210
D G GTG L+ L ++ A + D+S M+ A+ + G V K+
Sbjct: 49 LDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFR--------GNLKV--KYIE 98
Query: 211 KDLESL--DGKYDTVVCLDVLIHYPQSKADGMIAHLASL 247
D + KYD VV + H + S+
Sbjct: 99 ADYSKYDFEEKYDMVVSALSIHHLEDEDKKELYKRSYSI 137
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Length = 297 | Back alignment and structure |
|---|
Score = 66.8 bits (163), Expect = 8e-13
Identities = 31/152 (20%), Positives = 52/152 (34%), Gaps = 19/152 (12%)
Query: 94 KEVVREYFNNSGFQR-WKKIYGETD------DVNRVQLDIRLGHSKTVENTMQMLNDEGS 146
K+ Y+++ R + ++G D Q +IR +T E L G
Sbjct: 20 KDNAEIYYDDDDSDRFYFHVWGGEDIHVGLYKEPVDQDEIREASLRTDEWLASELAMTGV 79
Query: 147 LK-GIAVCDAGCGTGSLAIPLAKQ-GAIVSASDISAAMVAEARKKAEEELLADNGGEAPV 204
L+ D G G G A L ++ G + +I+ + + LADN
Sbjct: 80 LQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADN------ 133
Query: 205 MPKFEVKDLESL---DGKYDTVVCLDVLIHYP 233
+ + D YD + D +H P
Sbjct: 134 -ITVKYGSFLEIPCEDNSYDFIWSQDAFLHSP 164
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Length = 217 | Back alignment and structure |
|---|
Score = 65.7 bits (160), Expect = 9e-13
Identities = 23/107 (21%), Positives = 43/107 (40%), Gaps = 3/107 (2%)
Query: 152 VCDAGCGTGSLAIPLAKQGAI--VSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFE 209
V D GCG G+L L K ++ D+S + A+++ + L N E + +
Sbjct: 33 VIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGA 92
Query: 210 VKDLESLDGKYDTVVCLDVLIHYPQSKADGMIAHLAS-LAEKRLILS 255
+ + YD ++V+ H S+ L K +I++
Sbjct: 93 LTYQDKRFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVT 139
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Length = 243 | Back alignment and structure |
|---|
Score = 65.6 bits (160), Expect = 1e-12
Identities = 32/184 (17%), Positives = 49/184 (26%), Gaps = 40/184 (21%)
Query: 145 GSLKGIAVCDAGCGTGSLAIPLAKQGA-IVSASDISAAMVAEARKKAEEELLADNGGEAP 203
+ G+ + D GCG G + GA V D+S M+A AR + +
Sbjct: 40 PEVGGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPDTGIT------- 92
Query: 204 VMPKFEVKDLESL---DGKYDTVVCLDVLIHYPQ-----------SKADGMIA----HLA 245
+E DL+ L +D L + G H
Sbjct: 93 ----YERADLDKLHLPQDSFDLAYSSLALHYVEDVARLFRTVHQALSPGGHFVFSTEHPI 148
Query: 246 SLAEKR-------LILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQKVG 298
+A R P Y R + + AL + G
Sbjct: 149 YMAPARPGWAIDAEGRRTWPIDRYLVEGPRKTDWLAKG---VVKHHRTVGTTLNALIRSG 205
Query: 299 WKIR 302
+ I
Sbjct: 206 FAIE 209
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A Length = 219 | Back alignment and structure |
|---|
Score = 65.4 bits (159), Expect = 1e-12
Identities = 21/113 (18%), Positives = 49/113 (43%), Gaps = 3/113 (2%)
Query: 146 SLKGIAVCDAGCGTGSLAIPLAKQGAI--VSASDISAAMVAEARKKAEEELLADNGGEAP 203
S+ V D GCG G+L L K + ++ D+S +++ A+ + + + L + +
Sbjct: 27 SVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRI 86
Query: 204 VMPKFEVKDLESLDGKYDTVVCLDVLIHYPQSKADGMIAHLASLA-EKRLILS 255
+ + + + YD ++V+ H +++ L + +I+S
Sbjct: 87 SLFQSSLVYRDKRFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIVS 139
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276 | Back alignment and structure |
|---|
Score = 65.7 bits (160), Expect = 2e-12
Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 13/91 (14%)
Query: 148 KGIAVCDAGCGTGSLAIPLAKQG--AIVSASDISAAMVAEARKKAEEELLADNGGEAPVM 205
G V +AGCG G+ + LAK A +++ DIS + +AR+ E+ G V
Sbjct: 37 PGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKN------GIKNV- 89
Query: 206 PKFEVKDLESL---DGKYDTVVCLDVLIHYP 233
KF ++ SL D +D + VL H
Sbjct: 90 -KFLQANIFSLPFEDSSFDHIFVCFVLEHLQ 119
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254 | Back alignment and structure |
|---|
Score = 65.5 bits (159), Expect = 2e-12
Identities = 29/222 (13%), Positives = 64/222 (28%), Gaps = 27/222 (12%)
Query: 87 EEVGGGDKEVVREYFNNSGFQRWKKIYGETDDVNRVQLDIRLGHSKTVENTMQMLNDEGS 146
+ GD + + + W+ + V+ V + H +E + +
Sbjct: 35 KAELTGDLYDPEKGWYGKALEYWRTVPA---TVSGVLGGMDHVHDVDIEGSRNFIASLPG 91
Query: 147 LKGIAVCDAGCGTGSLAIPLAKQGA-IVSASDISAAMVAEARKKAEEELLADNGGEAPVM 205
D G G G + L + + M+ EA+++ +
Sbjct: 92 HGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGMPVGK-------- 143
Query: 206 PKFEVKDLESL---DGKYDTVVCLDVLIHYPQSKADGMIAHLA-SLAEKRLILSFAPKTF 261
F + +E+ YD +V I+ + H +L I F
Sbjct: 144 --FILASMETATLPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYI-------F 194
Query: 262 YYDLLKRVGELFPGPSKATRAYLHAEADVERALQKVGWKIRK 303
+ + K + ++ +R + G ++ K
Sbjct: 195 FKENCSTGDR--FLVDKEDSSLTRSDIHYKRLFNESGVRVVK 234
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209 | Back alignment and structure |
|---|
Score = 64.2 bits (156), Expect = 2e-12
Identities = 15/99 (15%), Positives = 26/99 (26%), Gaps = 13/99 (13%)
Query: 148 KGIAVCDAGCGTGSLAIPLAKQ-GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMP 206
V D G G + + + G +IS + +A + E
Sbjct: 23 LDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENNFK---------L 73
Query: 207 KFEVKDLESL---DGKYDTVVCLDVLIHYPQSKADGMIA 242
D+ L D V + H ++ I
Sbjct: 74 NISKGDIRKLPFKDESMSFVYSYGTIFHMRKNDVKEAID 112
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* Length = 216 | Back alignment and structure |
|---|
Score = 63.7 bits (155), Expect = 4e-12
Identities = 12/82 (14%), Positives = 27/82 (32%), Gaps = 12/82 (14%)
Query: 154 DAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDL 213
+ GC G+ LA ++ D+ + A ++ + + D+
Sbjct: 57 EIGCAAGAFTEKLAPHCKRLTVIDVMPRAIGRACQRTKRWSHIS----------WAATDI 106
Query: 214 ESL--DGKYDTVVCLDVLIHYP 233
+D +V +VL +
Sbjct: 107 LQFSTAELFDLIVVAEVLYYLE 128
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267 | Back alignment and structure |
|---|
Score = 63.4 bits (154), Expect = 1e-11
Identities = 19/108 (17%), Positives = 40/108 (37%), Gaps = 12/108 (11%)
Query: 135 ENTMQMLNDEGSL-KGIAVCDAGCGTGSLAIPLAKQ-GAIVSASDISAAMVAEARKKAEE 192
E T++ L+ +L + + D GCGTG + LA V+ D + + + A +
Sbjct: 32 EVTLKALSFIDNLTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQ 91
Query: 193 ELLADNGGEAPVMPKFEVKDLESL---DGKYDTVVCLDVLIHYPQSKA 237
L + V ++ L + + D + + + +
Sbjct: 92 SGLQNR-------VTGIVGSMDDLPFRNEELDLIWSEGAIYNIGFERG 132
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257 | Back alignment and structure |
|---|
Score = 62.6 bits (152), Expect = 1e-11
Identities = 20/116 (17%), Positives = 41/116 (35%), Gaps = 13/116 (11%)
Query: 127 RLGHSKTVENTMQMLNDEGSLK-GIAVCDAGCGTGSLAIPLAKQ-GAIVSASDISAAMVA 184
R G + E T + ++ L + D GCGTG + LA ++ D+ +
Sbjct: 25 RQGPG-SPEATRKAVSFINELTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIE 83
Query: 185 EARKKAEEELLADNGGEAPVMPKFEVKDLESL---DGKYDTVVCLDVLIHYPQSKA 237
+ A + AD K +++L + + D + + + +
Sbjct: 84 IFNENAVKANCADR-------VKGITGSMDNLPFQNEELDLIWSEGAIYNIGFERG 132
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Length = 305 | Back alignment and structure |
|---|
Score = 62.8 bits (152), Expect = 2e-11
Identities = 28/177 (15%), Positives = 48/177 (27%), Gaps = 28/177 (15%)
Query: 148 KGIAVCDAGCGTGSLAIPLAKQ---GAIVSASDISAAMVAEARKKAEEELLADNGGEAPV 204
G V CG S + L G + D + A + A LA
Sbjct: 118 PGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQ------ 171
Query: 205 MPKFEVKDLESLD--GKYDTVVCLDVLIHYP-QSKADGMIAHLASLAEK--RLILSFAPK 259
+D LD YD + + I+ P ++ + + L+ SF
Sbjct: 172 -ITLHRQDAWKLDTREGYDLLTSNGLNIYEPDDARVTELYRRFWQALKPGGALVTSFLTP 230
Query: 260 TFYYD-------------LLKRVGELFPGPSKATRAYLHAEADVERALQKVGWKIRK 303
L+ +F + L A L++ G+ +
Sbjct: 231 PPALSPDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHAQTRAQLEEAGFTDLR 287
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239 | Back alignment and structure |
|---|
Score = 61.7 bits (150), Expect = 2e-11
Identities = 23/108 (21%), Positives = 37/108 (34%), Gaps = 14/108 (12%)
Query: 129 GHSKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARK 188
H ++ ++ V D G G G A+ + D + MV A
Sbjct: 5 HHHHSLGLMIKTAECR---AEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASS 61
Query: 189 KAEEELLADNGGEAPVMPKFEVKDLESL---DGKYDTVVCLDVLIHYP 233
A+E+ G V +F+ ESL D +D + C H+
Sbjct: 62 FAQEK------GVENV--RFQQGTAESLPFPDDSFDIITCRYAAHHFS 101
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A Length = 202 | Back alignment and structure |
|---|
Score = 61.0 bits (148), Expect = 2e-11
Identities = 25/162 (15%), Positives = 55/162 (33%), Gaps = 25/162 (15%)
Query: 145 GSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPV 204
+ + G G A LA G V+A D S+ +A+A++ A+E+ + ++
Sbjct: 26 NQIPQGKILCLAEGEGRNACFLASLGYEVTAVDQSSVGLAKAKQLAQEKGVKITTVQS-- 83
Query: 205 MPKFEVKDLESLDGKYDTVVCLDVLIHYPQSKA--DGMIAHLA---SLAEKRLILSFAPK 259
+ D + + ++ +V + + + + L ++ FAP+
Sbjct: 84 ----NLADFDIVADAWEGIVSIFCHLPSSLRQQLYPKVYQGLKPGGVF----ILEGFAPE 135
Query: 260 TFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQKVGWKI 301
Y+ L ++ L + W I
Sbjct: 136 QLQYN----------TGGPKDLDLLPKLETLQSELPSLNWLI 167
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A Length = 263 | Back alignment and structure |
|---|
Score = 61.5 bits (149), Expect = 4e-11
Identities = 19/92 (20%), Positives = 32/92 (34%), Gaps = 12/92 (13%)
Query: 145 GSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPV 204
+ + G GTG +A+PL +G A D AAM+ R+K
Sbjct: 36 PKGEEPVFLELGVGTGRIALPLIARGYRYIALDADAAMLEVFRQKIA---------GVDR 86
Query: 205 MPKFEVKDLESL---DGKYDTVVCLDVLIHYP 233
+ D ++ D V+ + + P
Sbjct: 87 KVQVVQADARAIPLPDESVHGVIVVHLWHLVP 118
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Length = 260 | Back alignment and structure |
|---|
Score = 61.0 bits (148), Expect = 6e-11
Identities = 21/105 (20%), Positives = 35/105 (33%), Gaps = 14/105 (13%)
Query: 132 KTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAE 191
+ MQ+ + V D G G +A A V A D++ ++ AR E
Sbjct: 24 SDLAKLMQIAALK---GNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIE 80
Query: 192 EELLADNGGEAPVMPKFEVKDLESL---DGKYDTVVCLDVLIHYP 233
++ D E + D ++ V C H+P
Sbjct: 81 GNGHQQ--------VEYVQGDAEQMPFTDERFHIVTCRIAAHHFP 117
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Length = 261 | Back alignment and structure |
|---|
Score = 60.7 bits (147), Expect = 6e-11
Identities = 24/98 (24%), Positives = 38/98 (38%), Gaps = 17/98 (17%)
Query: 139 QMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADN 198
++N KG + D G GTG ++ LA QG V A + S M +A + E
Sbjct: 25 AIINLLNLPKGSVIADIGAGTGGYSVALANQGLFVYAVEPSIVMRQQAVVHPQVE----- 79
Query: 199 GGEAPVMPKFEVKDLESL---DGKYDTVVCLDVLIHYP 233
+ E+L D D V+ + + H+
Sbjct: 80 ---------WFTGYAENLALPDKSVDGVISILAIHHFS 108
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Length = 273 | Back alignment and structure |
|---|
Score = 60.6 bits (147), Expect = 8e-11
Identities = 27/86 (31%), Positives = 34/86 (39%), Gaps = 11/86 (12%)
Query: 152 VCDAGCGTGSLAIPLAKQ-GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEV 210
V D GCG G A+ LA V+ IS V +A +A LA+ F
Sbjct: 65 VLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLANR-------VTFSY 117
Query: 211 KDLESL---DGKYDTVVCLDVLIHYP 233
D L D +D V L+ L H P
Sbjct: 118 ADAMDLPFEDASFDAVWALESLHHMP 143
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A Length = 250 | Back alignment and structure |
|---|
Score = 60.3 bits (146), Expect = 8e-11
Identities = 23/173 (13%), Positives = 54/173 (31%), Gaps = 30/173 (17%)
Query: 147 LKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMP 206
+ + + G G L + ++ + S ++ A+ + ++ +
Sbjct: 41 FRPGNLLELGSFKGDFTSRLQEHFNDITCVEASEEAISHAQGRLKDGI------------ 88
Query: 207 KFEVKDLESL--DGKYDTVVCLDVL--IHYPQSKADGMIAHLASLAEK---RLILS---F 256
+ E +YD +V VL I P + ++ + RL L
Sbjct: 89 TYIHSRFEDAQLPRRYDNIVLTHVLEHIDDPVA----LLKRINDDWLAEGGRLFLVCPNA 144
Query: 257 APKTFYYDLLKRVGELFPGPSKATRAYLHA----EADVERALQKVGWKIRKRG 305
+ + + ++A A+ H +ER + G ++ R
Sbjct: 145 NAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGLQVTYRS 197
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* Length = 298 | Back alignment and structure |
|---|
Score = 60.9 bits (147), Expect = 9e-11
Identities = 28/169 (16%), Positives = 57/169 (33%), Gaps = 26/169 (15%)
Query: 77 DPERRRQLQAEEVGGGDKEVVREYFNNSGFQRWKKIYGETDDVNRVQLDIRLGHS--KTV 134
+ + ++ G KE +RE++N+ + G ++IR ++ K
Sbjct: 3 SSSPLKTFRKDQAMEGKKEEIREHYNSIRER------GRESRQRSKTINIRNANNFIKA- 55
Query: 135 ENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAI-VSASDISAAMVAEARKKAEEE 193
L + +G +V D GCG G + + G DI+ + +AR +A
Sbjct: 56 -----CLIRLYTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNM 110
Query: 194 LLADNGGEAPVMPKFEVKDLES----LDGKYDTVVCLDVLIHYPQSKAD 238
+ F +D L ++D + + +
Sbjct: 111 -------KRRFKVFFRAQDSYGRHMDLGKEFDVISSQFSFHYAFSTSES 152
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Length = 266 | Back alignment and structure |
|---|
Score = 59.8 bits (145), Expect = 2e-10
Identities = 26/143 (18%), Positives = 54/143 (37%), Gaps = 19/143 (13%)
Query: 97 VREYFNNSGFQRWKKIYGETDDVNRVQLDIRLG----HSKTVENTMQMLNDEGSLKGIAV 152
+ N + + + + TD+ +V + G S +E T ++L+D + V
Sbjct: 1 MTLIENLNSDKTFLENNQYTDEGVKV-YEFIFGENYISSGGLEATKKILSDIELNENSKV 59
Query: 153 CDAGCGTGSLAIPLAKQ-GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVK 211
D G G G + + ++ GA DI + +V A ++ FE
Sbjct: 60 LDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGNNKII----------FEAN 109
Query: 212 DLESL---DGKYDTVVCLDVLIH 231
D+ + + +D + D ++
Sbjct: 110 DILTKEFPENNFDLIYSRDAILA 132
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 Length = 219 | Back alignment and structure |
|---|
Score = 59.1 bits (143), Expect = 2e-10
Identities = 26/164 (15%), Positives = 52/164 (31%), Gaps = 42/164 (25%)
Query: 152 VCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVK 211
+ G GTG A+PL + + + S M ARK+ L
Sbjct: 51 GVEIGVGTGRFAVPLKIKIGV----EPSERMAEIARKRGVFVLKG--------------- 91
Query: 212 DLESL---DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAE-KR--------LILSFAPK 259
E+L D +D + + + + +L E R ++ +
Sbjct: 92 TAENLPLKDESFDFALMVTTICFVDDPE--------RALKEAYRILKKGGYLIVGIVDRE 143
Query: 260 TFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQKVGWKIRK 303
+F ++ E A + ++ ++K G++ K
Sbjct: 144 SFLGREYEKNKEKSVFYK---NARFFSTEELMDLMRKAGFEEFK 184
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} Length = 215 | Back alignment and structure |
|---|
Score = 58.1 bits (140), Expect = 3e-10
Identities = 21/113 (18%), Positives = 38/113 (33%), Gaps = 14/113 (12%)
Query: 148 KGIAVCDAGCGTGSLAIPLAKQGAI-VSASDISAAMVAEARKKAEEELLADNGGEAPVMP 206
+ GCG +L+ L G V++ D S+ +VA + P +
Sbjct: 42 PEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYA---------HVPQL- 91
Query: 207 KFEVKDLESL---DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSF 256
++E D+ L +D V+ L + D + +LS
Sbjct: 92 RWETMDVRKLDFPSASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSE 144
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* Length = 292 | Back alignment and structure |
|---|
Score = 58.6 bits (141), Expect = 4e-10
Identities = 25/167 (14%), Positives = 52/167 (31%), Gaps = 20/167 (11%)
Query: 152 VCDAGCGTGSLAIPLAKQ--------GAIVSASDISAAMVAEARKKAEEELLADNGGEAP 203
+ G G G + + + + + SA +A+ ++ + +N A
Sbjct: 56 ILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAW 115
Query: 204 VMPKFE----VKDLESLDGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKR---LILSF 256
+ K+D + + +L + A + SL LI+
Sbjct: 116 HKETSSEYQSRMLEKKELQKWDFIHMIQMLYYVKDIPA--TLKFFHSLLGTNAKMLIIVV 173
Query: 257 APKTFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQKVGWKIRK 303
+ + + L K+ G FP D+ + L +G K
Sbjct: 174 SGSSGWDKLWKKYGSRFPQDD---LCQYITSDDLTQMLDNLGLKYEC 217
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} Length = 259 | Back alignment and structure |
|---|
Score = 57.9 bits (140), Expect = 6e-10
Identities = 25/162 (15%), Positives = 44/162 (27%), Gaps = 28/162 (17%)
Query: 154 DAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVK 211
D GCG G+ L + +++ D M+ +A + F
Sbjct: 39 DLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRLPN-------------TNFGKA 85
Query: 212 DLESL--DGKYDTVVCLDVLIHYPQSKADGMIAHLAS-LAEKRLILSFAPKTFYYDLLKR 268
DL + K D + V P +++ L L ++ P
Sbjct: 86 DLATWKPAQKADLLYANAVFQWVPD--HLAVLSQLMDQLESGGVLAVQMPDNLQEPTHIA 143
Query: 269 VGELFP--------GPSKATRAYLHAEADVERALQKVGWKIR 302
+ E R L +D AL ++
Sbjct: 144 MHETADGGPWKDAFSGGGLRRKPLPPPSDYFNALSPKSSRVD 185
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 Length = 256 | Back alignment and structure |
|---|
Score = 57.1 bits (138), Expect = 1e-09
Identities = 18/85 (21%), Positives = 34/85 (40%), Gaps = 10/85 (11%)
Query: 152 VCDAGCGTGSLAIPLAKQ-GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEV 210
+ D G G+G + A+ G + D+S+ A+A+++AEE +++ F
Sbjct: 40 ILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSER-------VHFIH 92
Query: 211 KDLESL--DGKYDTVVCLDVLIHYP 233
D + K D C+
Sbjct: 93 NDAAGYVANEKCDVAACVGATWIAG 117
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} Length = 226 | Back alignment and structure |
|---|
Score = 56.6 bits (136), Expect = 1e-09
Identities = 29/160 (18%), Positives = 49/160 (30%), Gaps = 25/160 (15%)
Query: 154 DAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEE--LLADNGGEAPVMPKFEVK 211
+AGCG G A Q A +A D S ++ AR A + GE P
Sbjct: 54 EAGCGHGPDAARFGPQAARWAAYDFSPELLKLARANAPHADVYEWNGKGELP----AG-- 107
Query: 212 DLESLDGKYDTVVCLDVLIHYPQSKADGMIAHLAS-LAEKRLILSFAPKTFYYDLLKRVG 270
L + +V + I L A L P+ ++ +R+
Sbjct: 108 ----LGAPFGLIVS-----RRGPTSV---ILRLPELAAPDAHFLYVGPRLNVPEVPERLA 155
Query: 271 E----LFPGPSKATRAYLHAEADVERALQKVGWKIRKRGL 306
+ + A+ D + + +G R+
Sbjct: 156 AVGWDIVAEDHVSVLAHAPTWEDWQMRGEFMGKLARRADW 195
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} Length = 211 | Back alignment and structure |
|---|
Score = 55.6 bits (134), Expect = 2e-09
Identities = 30/166 (18%), Positives = 50/166 (30%), Gaps = 37/166 (22%)
Query: 149 GIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKF 208
G ++ + G GTG L + S AM+A R++A E +
Sbjct: 37 GESLLEVGAGTGYWLRRLP--YPQKVGVEPSEAMLAVGRRRAPEA-------------TW 81
Query: 209 EVKDLESL---DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKR---------LILSF 256
E+L +D V+ L L E R ++
Sbjct: 82 VRAWGEALPFPGESFDVVLLFTTLEFVED--------VERVLLEARRVLRPGGALVVGVL 133
Query: 257 APKTFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQKVGWKIR 302
+ + L +R+GE P R A D++ L +
Sbjct: 134 EALSPWAALYRRLGEKGVLPWAQAR--FLAREDLKALLGPPEAEGE 177
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} Length = 950 | Back alignment and structure |
|---|
Score = 57.5 bits (138), Expect = 3e-09
Identities = 28/116 (24%), Positives = 41/116 (35%), Gaps = 9/116 (7%)
Query: 147 LKGIAVCDAGCGTGSLAIPLAKQGA---IVSASDISAAMVAEARKKAEEELLADNGGEAP 203
+ D GCG+GSL L + DIS +A A K +L +
Sbjct: 720 SSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACN--V 777
Query: 204 VMPKFEVKDLESLD---GKYDTVVCLDVLIHYPQSKADGMIAHLASLAE-KRLILS 255
+ D D CL+V+ H + +A + SL K LI+S
Sbjct: 778 KSATLYDGSILEFDSRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPKLLIVS 833
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A Length = 383 | Back alignment and structure |
|---|
Score = 54.3 bits (130), Expect = 2e-08
Identities = 27/103 (26%), Positives = 38/103 (36%), Gaps = 16/103 (15%)
Query: 145 GSLKGIAVCDAGCGTGSLAIPLAK---QGAIVSASDISAAMVAEARKKAEE--ELLADNG 199
GSL+G V D GCGTG +K + V D+ + ARK E E +
Sbjct: 80 GSLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSP 139
Query: 200 GEAPVMPKFEVKDLESL---------DGKYDTVVCLDVLIHYP 233
+ V +F +E+L D D V+ V
Sbjct: 140 SRSNV--RFLKGFIENLATAEPEGVPDSSVDIVISNCVCNLST 180
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Length = 241 | Back alignment and structure |
|---|
Score = 52.8 bits (126), Expect = 2e-08
Identities = 28/174 (16%), Positives = 47/174 (27%), Gaps = 18/174 (10%)
Query: 101 FNNSGFQRWKKIYGETDDVNRVQLDIRLGHSKTVENTMQMLNDE--GSLKGIAVCDAGCG 158
F + WK+I D + I + +Q E D G G
Sbjct: 30 FYSKAKTYWKQIPPTVDGMLGGYGHISSIDINSSRKFLQRFLREGPNKTGTSCALDCGAG 89
Query: 159 TGSLAIPLA-KQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL- 216
G + L V DI+ + +A+ EE + L+
Sbjct: 90 IGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVR--------NYFCCGLQDFT 141
Query: 217 --DGKYDTVVCLDVLIHYPQSKADGMIAHLAS-LAEKRLIL---SFAPKTFYYD 264
YD + V+ H + L +I+ + A + D
Sbjct: 142 PEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILD 195
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} Length = 240 | Back alignment and structure |
|---|
Score = 53.0 bits (127), Expect = 2e-08
Identities = 23/123 (18%), Positives = 43/123 (34%), Gaps = 22/123 (17%)
Query: 152 VCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVK 211
V D GCG G ++G DI+ M+ K V+ ++
Sbjct: 45 VLDIGCGRGEFLELCKEEGIESIGVDINEDMIKFCEGK------------FNVVKSDAIE 92
Query: 212 DLESL-DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEK--RLILS-------FAPKTF 261
L+SL D D V+ + H + +++ S + +++ ++ F
Sbjct: 93 YLKSLPDKYLDGVMISHFVEHLDPERLFELLSLCYSKMKYSSYIVIESPNPTSLYSLINF 152
Query: 262 YYD 264
Y D
Sbjct: 153 YID 155
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Length = 219 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 4e-08
Identities = 19/88 (21%), Positives = 29/88 (32%), Gaps = 14/88 (15%)
Query: 148 KGIAVCDAGCGTGSLAIPLAKQ---GAIVSASDISAAMVAEARKKAEEELLADNGGEAPV 204
+G+ V D G G G L+K V A D+ MV A +K + G V
Sbjct: 37 EGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKL------GLKNV 90
Query: 205 MPKFEVKDLESL---DGKYDTVVCLDVL 229
+ + + D D +
Sbjct: 91 --EVLKSEENKIPLPDNTVDFIFMAFTF 116
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} Length = 275 | Back alignment and structure |
|---|
Score = 52.0 bits (124), Expect = 6e-08
Identities = 25/173 (14%), Positives = 51/173 (29%), Gaps = 17/173 (9%)
Query: 148 KGIAVCDAGCGTGSLAIPLAKQ---GAIVSASDISAAMVAEARKKAEEELLADNGGEAPV 204
G + + GCG G L+ LA Q V+ DI++ + G
Sbjct: 43 PGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDR 102
Query: 205 MP-KFEVKDLESL----DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILS---- 255
+ F + L D +D VV L ++ + A ++ + + ++
Sbjct: 103 LTVHFNTNLSDDLGPIADQHFDRVVLAHSLWYFASANALALLFKNMAAVCDHVDVAEWSM 162
Query: 256 --FAPKTFYYDLLKRVGELFPGPSKATRAYLHAEAD---VERALQKVGWKIRK 303
A + + L + + A + + + W
Sbjct: 163 QPTALDQIGHLQAAMIQGLLYAIAPSDVANIRTLITPDTLAQIAHDNTWTYTA 215
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 Length = 203 | Back alignment and structure |
|---|
Score = 50.9 bits (121), Expect = 9e-08
Identities = 34/194 (17%), Positives = 56/194 (28%), Gaps = 25/194 (12%)
Query: 141 LNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGG 200
+ + G V CG L+ QG V +++S A V + E+ + G
Sbjct: 15 WSSLNVVPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITSQG 74
Query: 201 EAPV----MPKFEVKDL----ESLDGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEK-- 250
+ V + D G +I P + + HL +L +
Sbjct: 75 DFKVYAAPGIEIWCGDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQAC 134
Query: 251 RLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADVE----RALQKVGWKIRKRGL 306
+L YD G F P + +V + + K GL
Sbjct: 135 SGLLIT----LEYDQALLEGPPFSVPQTWLHRVMSGNWEVTKVGGQDTLHSSARGLKAGL 190
Query: 307 ITTQFYFARLVEAV 320
R+ E V
Sbjct: 191 -------ERMDEHV 197
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 Length = 269 | Back alignment and structure |
|---|
Score = 49.1 bits (117), Expect = 5e-07
Identities = 19/100 (19%), Positives = 27/100 (27%), Gaps = 18/100 (18%)
Query: 139 QMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLA 196
L + K AV D GCG G A D+S + A K+ +
Sbjct: 76 AQLRERLDDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQ---- 131
Query: 197 DNGGEAPVMPKFEVKDLESL---DGKYDTVVCLDVLIHYP 233
F V L D D ++ +
Sbjct: 132 ---------VTFCVASSHRLPFSDTSMDAIIRIYAPCKAE 162
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* Length = 254 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 5e-07
Identities = 30/123 (24%), Positives = 45/123 (36%), Gaps = 21/123 (17%)
Query: 138 MQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLAD 197
++ L G V D G G+G LAI K G DI ++ +A A+
Sbjct: 111 LKAL-ARHLRPGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAEANAKR----- 164
Query: 198 NGGEAPVMPKFEVKDLESL--DGKYDTVVC---LDVLIHYPQSKADGMIAHLASLAEKRL 252
NG V P+F LE+ G +D +V ++ A L R
Sbjct: 165 NG----VRPRFLEGSLEAALPFGPFDLLVANLYAELHAAL----APRYREALVP--GGRA 214
Query: 253 ILS 255
+L+
Sbjct: 215 LLT 217
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} Length = 299 | Back alignment and structure |
|---|
Score = 48.5 bits (115), Expect = 1e-06
Identities = 18/111 (16%), Positives = 39/111 (35%), Gaps = 18/111 (16%)
Query: 139 QMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAI---VSASDISAAMVAEARKKAEEELL 195
+M+++ + + D GCG G+ + +A++ + SD+SA M+ A E
Sbjct: 27 KMIDEYHDGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPD 86
Query: 196 ADNGGEAPVMPKFEVKDLESL---------DGKYDTVVCLDVLIHYPQSKA 237
F++ + K D + ++ + K
Sbjct: 87 TYKNVS------FKISSSDDFKFLGADSVDKQKIDMITAVECAHWFDFEKF 131
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* Length = 312 | Back alignment and structure |
|---|
Score = 48.3 bits (115), Expect = 1e-06
Identities = 21/128 (16%), Positives = 41/128 (32%), Gaps = 20/128 (15%)
Query: 98 REYFNNSGFQRWKKIYGETDDVNRVQLDIRLGHSKTVENTMQMLNDEGSLKGIAVCDAGC 157
+ + KK+ E + Q + + H ++ DAGC
Sbjct: 79 AALGDPEHSEYEKKVIAELHRLESAQAEFLMDHLGQAGPDDTLV------------DAGC 126
Query: 158 GTGSLAIPLAKQ-GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL 216
G G + ++ G+ V +SAA ++A E + D+ + V ++
Sbjct: 127 GRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRARELRIDDH-------VRSRVCNMLDT 179
Query: 217 DGKYDTVV 224
V
Sbjct: 180 PFDKGAVT 187
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* Length = 381 | Back alignment and structure |
|---|
Score = 48.4 bits (115), Expect = 1e-06
Identities = 24/92 (26%), Positives = 38/92 (41%), Gaps = 10/92 (10%)
Query: 136 NTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELL 195
+Q ++G V D G G G+L +PLA+ GA V + A V +K E
Sbjct: 221 EALQERLGPEGVRGRQVLDLGAGYGALTLPLARMGAEVVGVEDDLASVLSLQKGLEA--- 277
Query: 196 ADNGGEAPVMPKFEVKDLESL--DGKYDTVVC 225
N +A E+L + ++D +V
Sbjct: 278 --NALKAQA---LHSDVDEALTEEARFDIIVT 304
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} Length = 292 | Back alignment and structure |
|---|
Score = 48.0 bits (113), Expect = 2e-06
Identities = 15/84 (17%), Positives = 28/84 (33%), Gaps = 2/84 (2%)
Query: 147 LKGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPV 204
+G V D GC G L + +A + + + DI + ++ AR+ L +
Sbjct: 45 FRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQT 104
Query: 205 MPKFEVKDLESLDGKYDTVVCLDV 228
+ + E C
Sbjct: 105 LEGDPGAEGEEGTTTVRKRSCFPA 128
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 Length = 200 | Back alignment and structure |
|---|
Score = 46.9 bits (111), Expect = 2e-06
Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 14/84 (16%)
Query: 143 DEGSLKGIAVCDAGCGTGSLAIPLAKQGA-IVSASDISAAMVAEARKKAEEELLADNGGE 201
++G++ G +V DAG G G LA GA V+A DI + A++
Sbjct: 46 NDGNIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCGGV-------- 97
Query: 202 APVMPKFEVKDLESLDGKYDTVVC 225
F V D+ + GKYDT +
Sbjct: 98 -----NFMVADVSEISGKYDTWIM 116
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 Length = 194 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 2e-06
Identities = 17/76 (22%), Positives = 33/76 (43%), Gaps = 8/76 (10%)
Query: 152 VCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVK 211
+ D GCG G + I LA + + +DI+ + A++ + N + + +
Sbjct: 56 ILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKENIKL-----NNLDNYDI-RVVHS 109
Query: 212 DLES--LDGKYDTVVC 225
DL D KY+ ++
Sbjct: 110 DLYENVKDRKYNKIIT 125
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} Length = 205 | Back alignment and structure |
|---|
Score = 46.4 bits (111), Expect = 2e-06
Identities = 35/124 (28%), Positives = 55/124 (44%), Gaps = 22/124 (17%)
Query: 138 MQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAI-VSASDISAAMVAEARKKAEEELLA 196
M + + +K + V D G G+G LAI K GA V A+DIS + A + A
Sbjct: 51 MLGI-ERAMVKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAAL---- 105
Query: 197 DNGGEAPVMPKFEVKDLESLDGKYDTVVC---LDVLIHYPQSKADGMIAHLASLAEK--R 251
NG + K + L +DGK+D +V ++L+ +I L S + +
Sbjct: 106 -NGIYDIALQKTSL--LADVDGKFDLIVANILAEILL--------DLIPQLDSHLNEDGQ 154
Query: 252 LILS 255
+I S
Sbjct: 155 VIFS 158
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} Length = 200 | Back alignment and structure |
|---|
Score = 46.0 bits (108), Expect = 4e-06
Identities = 29/166 (17%), Positives = 51/166 (30%), Gaps = 28/166 (16%)
Query: 152 VCDAGCGTGSLAIPLAK--QGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFE 209
+ D GCG LA+ + I A DI A +A G+ K+
Sbjct: 53 ILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSII---------GKLKTTIKYR 103
Query: 210 VKDLES--LDGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLK 267
+ ES G YD V L +L + + ++ L + ++SF K+ L
Sbjct: 104 FLNKESDVYKGTYDVVFLLKML-PVLKQQDVNILDFLQLFHTQNFVISFPIKS----LSG 158
Query: 268 RVGELFPGPSKATRAYLHAEADVERALQKVGWKIRKRGLITTQFYF 313
+ + E + + + + Y
Sbjct: 159 KEKGMEENYQ----------LWFESFTKGWIKILDSKVIGNELVYI 194
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} Length = 197 | Back alignment and structure |
|---|
Score = 45.7 bits (108), Expect = 5e-06
Identities = 17/54 (31%), Positives = 21/54 (38%), Gaps = 3/54 (5%)
Query: 148 KGIAVCDAGCGTGSLAIPLAKQ---GAIVSASDISAAMVAEARKKAEEELLADN 198
+G V DA CG G+ LA V DI +A KK + L D
Sbjct: 22 EGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDR 75
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* Length = 373 | Back alignment and structure |
|---|
Score = 46.4 bits (110), Expect = 6e-06
Identities = 24/179 (13%), Positives = 48/179 (26%), Gaps = 47/179 (26%)
Query: 148 KGIAVCDAGCGTGSLAI--PLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVM 205
G +V D CG+G++ I L + + + + A A + D
Sbjct: 217 DGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDK------- 269
Query: 206 PKFEVKDLESL---DGKYDTVVCLDVLIHYPQSKAD---GMIAHLASLAEKRLILSFAPK 259
KF D L D + + G ++
Sbjct: 270 IKFIQGDATQLSQYVDSVDFAIS------------NLPYG----------LKIGKKSMIP 307
Query: 260 TFYYDLLKRVGELFPGPSKATRAY-LHAEADVERALQKVGWKIRKR-----GLITTQFY 312
Y + ++ + + +E A+ + G++I G + Y
Sbjct: 308 DLYMKFFNELAKVLEK----RGVFITTEKKAIEEAIAENGFEIIHHRVIGHGGLMVHLY 362
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} Length = 244 | Back alignment and structure |
|---|
Score = 45.6 bits (108), Expect = 6e-06
Identities = 30/191 (15%), Positives = 51/191 (26%), Gaps = 46/191 (24%)
Query: 119 VNRVQLDIRLGHSKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAI--VSAS 176
+N QL RL + V + + K + D G L K A
Sbjct: 3 LNEEQLSKRL---EKVASYIT--------KNERIADIGSDHAYLPCFAVKNQTASFAIAG 51
Query: 177 DISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESLDGKYDTVVCLDVLIHYPQSK 236
++ A+K+ L + V + +E D V+
Sbjct: 52 EVVDGPFQSAQKQVRSSGLTEQ---IDVRKGNGLAVIEKKDAIDTIVIA----------- 97
Query: 237 ADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQK 296
GM LI + + L V +L P A + ++
Sbjct: 98 --GMGGT--------LIRTILEE--GAAKLAGVTKLILQP-------NIAAWQLREWSEQ 138
Query: 297 VGWKIRKRGLI 307
W I ++
Sbjct: 139 NNWLITSEAIL 149
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} Length = 354 | Back alignment and structure |
|---|
Score = 46.3 bits (110), Expect = 6e-06
Identities = 30/186 (16%), Positives = 58/186 (31%), Gaps = 44/186 (23%)
Query: 140 MLNDEGSLKGIAVCDAGCGTGSLAI---PLAKQGAIVSASDISAAMVAEARKKAEEELLA 196
+L + G+ V D G+G++A+ + V A D+ + AR+ A
Sbjct: 195 LLRLADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALA---- 250
Query: 197 DNGGEAPVMPKFEVKDLESLDGKYDTVVCLDVLIHYPQSKAD---GMIAHLASLAEKRLI 253
+G + + + L + D ++ + G RL
Sbjct: 251 -SGLSWIRFLRADARHLPRFFPEVDRILA------------NPPHG----------LRLG 287
Query: 254 LSFAPKTFYYDLLKRVGE-LFPGPSKATRAY-LHAEADVERALQKVGWKIRKR-----GL 306
Y+D L+ L PG R L + + G+ +R G
Sbjct: 288 RKEGLFHLYWDFLRGALALLPPG----GRVALLTLRPALLKRALPPGFALRHARVVEQGG 343
Query: 307 ITTQFY 312
+ + +
Sbjct: 344 VYPRVF 349
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* Length = 241 | Back alignment and structure |
|---|
Score = 45.4 bits (107), Expect = 7e-06
Identities = 28/83 (33%), Positives = 31/83 (37%), Gaps = 9/83 (10%)
Query: 145 GSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPV 204
S K V DA CG G I A G V A DI +A AR AE +AD
Sbjct: 75 QSFKCDVVVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIALARNNAEVYGIADK------ 128
Query: 205 MPKFEVKDLESLD--GKYDTVVC 225
+F D L K D V
Sbjct: 129 -IEFICGDFLLLASFLKADVVFL 150
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} Length = 343 | Back alignment and structure |
|---|
Score = 45.5 bits (108), Expect = 1e-05
Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 10/76 (13%)
Query: 152 VCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFE 209
V D GCG G L++ A+ ++ D+SA V +R NG E V F
Sbjct: 200 VLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLA-----ANGVEGEV---FA 251
Query: 210 VKDLESLDGKYDTVVC 225
+ G++D ++
Sbjct: 252 SNVFSEVKGRFDMIIS 267
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* Length = 225 | Back alignment and structure |
|---|
Score = 43.7 bits (103), Expect = 3e-05
Identities = 19/111 (17%), Positives = 37/111 (33%), Gaps = 10/111 (9%)
Query: 148 KGIAVCDAGCGTGSLAIPLAKQGAI--VSASDISAAMVAEARKKAEEELLADNGGEAPVM 205
+G + D G L I L ++G I A ++ A K E +G + +
Sbjct: 15 QGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEA-----HGLKEKIQ 69
Query: 206 PKF-EVKDLESLDGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILS 255
+ + + + + + LA++ +RLIL
Sbjct: 70 VRLANGLAAFEETDQVSVITIAGMGGRLIARILEEGLGKLANV--ERLILQ 118
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* Length = 185 | Back alignment and structure |
|---|
Score = 42.9 bits (101), Expect = 3e-05
Identities = 10/49 (20%), Positives = 18/49 (36%)
Query: 148 KGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLA 196
V DA G G+ LA V A D+ + + ++ + +
Sbjct: 22 DESIVVDATMGNGNDTAFLAGLSKKVYAFDVQEQALGKTSQRLSDLGIE 70
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* Length = 281 | Back alignment and structure |
|---|
Score = 43.7 bits (102), Expect = 4e-05
Identities = 30/168 (17%), Positives = 55/168 (32%), Gaps = 27/168 (16%)
Query: 152 VCDAGCGTGSLAIPLA--KQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFE 209
+ D CG LA P + ASDI A +V + V +
Sbjct: 136 LRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALT---------RLNVPHRTN 186
Query: 210 VKDLES--LDGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLK 267
V DL LD D + L L + + + ++++F K+ L +
Sbjct: 187 VADLLEDRLDEPADVTLLLKTLPCLETQQRGSGWEVIDIVNSPNIVVTFPTKS----LGQ 242
Query: 268 RVGELFPGPSKATRAYLHAEADVERALQKVGWKIRKRGLITTQFYFAR 315
R +F S++ E ++ +I++ + Y +
Sbjct: 243 RSKGMFQNYSQS----------FESQARERSCRIQRLEIGNELIYVIQ 280
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} Length = 230 | Back alignment and structure |
|---|
Score = 43.3 bits (102), Expect = 4e-05
Identities = 37/190 (19%), Positives = 56/190 (29%), Gaps = 46/190 (24%)
Query: 120 NRVQLDIRLGHSKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAI--VSASD 177
+QL RL + V N + KG + D G L I L + G A +
Sbjct: 4 MDLQLSKRL---QKVANYVP--------KGARLLDVGSDHAYLPIFLLQMGYCDFAIAGE 52
Query: 178 ISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESLDGKYDTVVCLDVLIHYPQSKA 237
+ A K E L V + E D +C
Sbjct: 53 VVNGPYQSALKNVSEHGLTSK---IDVRLANGLSAFEEADNIDTITIC------------ 97
Query: 238 DGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQKV 297
GM L IL+ D L+ V L P+ + E D+ + L
Sbjct: 98 -GMGGRLI-----ADILNNDI-----DKLQHVKTLVLQPN-------NREDDLRKWLAAN 139
Query: 298 GWKIRKRGLI 307
++I ++
Sbjct: 140 DFEIVAEDIL 149
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* Length = 433 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 4e-05
Identities = 28/109 (25%), Positives = 46/109 (42%), Gaps = 20/109 (18%)
Query: 152 VCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVK 211
V D CG G+ +PLA Q A V + A+V + ++ A NG + V F +
Sbjct: 290 VLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARL-----NGLQ-NV--TFYHE 341
Query: 212 DLESL-------DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLI 253
+LE +D V LD ++ A G++ + L R++
Sbjct: 342 NLEEDVTKQPWAKNGFD-KVLLDP----ARAGAAGVMQQIIKLEPIRIV 385
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 Length = 207 | Back alignment and structure |
|---|
Score = 42.8 bits (100), Expect = 5e-05
Identities = 19/97 (19%), Positives = 33/97 (34%), Gaps = 10/97 (10%)
Query: 130 HSKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGA-IVSASDISAAMVAEARK 188
+ + G ++G V D G GTG L+ GA V ++ V +
Sbjct: 31 PGNAASELLWLAYSLGDIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIE 90
Query: 189 KAEEELLADNGGEAPVMPKFEVKDLESLDGKYDTVVC 225
E G+ V + D+ + + D V+
Sbjct: 91 NLGE-----FKGKFKVF----IGDVSEFNSRVDIVIM 118
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} Length = 375 | Back alignment and structure |
|---|
Score = 43.0 bits (101), Expect = 8e-05
Identities = 20/78 (25%), Positives = 32/78 (41%), Gaps = 9/78 (11%)
Query: 152 VCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFE 209
+ D GCG G + + L + A V D S VA +R N EA +F
Sbjct: 226 IVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNV-----ETNMPEALDRCEFM 280
Query: 210 VKDLES--LDGKYDTVVC 225
+ + S +++ V+C
Sbjct: 281 INNALSGVEPFRFNAVLC 298
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* Length = 287 | Back alignment and structure |
|---|
Score = 42.2 bits (100), Expect = 1e-04
Identities = 11/72 (15%), Positives = 21/72 (29%), Gaps = 8/72 (11%)
Query: 154 DAGCGTGSLAIPLAKQ-GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKD 212
D GCG G+ + ++ V +S ++ + +
Sbjct: 70 DVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLR-----SK--RVLLAG 122
Query: 213 LESLDGKYDTVV 224
E D D +V
Sbjct: 123 WEQFDEPVDRIV 134
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* Length = 298 | Back alignment and structure |
|---|
Score = 41.3 bits (96), Expect = 2e-04
Identities = 21/150 (14%), Positives = 43/150 (28%), Gaps = 23/150 (15%)
Query: 135 ENTMQMLNDEGSLKGIA----VCDAGCGTGSL-AIPLAKQ-GAIVSASDISAAMVAEARK 188
+++L +E +L G G L I L+ G V+ +I + +RK
Sbjct: 105 PRYLELLKNEAALGRFRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRK 164
Query: 189 KAEEELLADNGGEAPVMPKFEVKDLESLDGKYDTVVCLDVLIHYPQSKADGMIAHLASLA 248
E + D +DG V+ + L + + ++
Sbjct: 165 VIEGLGVDGV--------NVITGDETVIDGLEFDVLMVAALAEPKR----RVFRNIHRYV 212
Query: 249 EKRLILSF-----APKTFYYDLLKRVGELF 273
+ + + Y + F
Sbjct: 213 DTETRIIYRTYTGMRAILYAPVSDDDITGF 242
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} Length = 302 | Back alignment and structure |
|---|
Score = 41.3 bits (96), Expect = 2e-04
Identities = 14/101 (13%), Positives = 28/101 (27%), Gaps = 11/101 (10%)
Query: 142 NDEGSLKGIAVCDAGCGTG-SLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGG 200
V G G L + A++ A+D A +A ++ +
Sbjct: 42 TFLDDSNKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKTK 101
Query: 201 EAPVMPKFEVKDLESL---------DGKYDTVVCLDVLIHY 232
E ++ GK++ + + HY
Sbjct: 102 YYKFDYIQETIRSDTFVSSVREVFYFGKFNIIDWQFAI-HY 141
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* Length = 253 | Back alignment and structure |
|---|
Score = 40.9 bits (95), Expect = 3e-04
Identities = 30/166 (18%), Positives = 52/166 (31%), Gaps = 26/166 (15%)
Query: 152 VCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVK 211
V D CG LA+ A V DI + +++ E F ++
Sbjct: 109 VLDIACGLNPLALYERGI-ASVWGCDIHQGLG---------DVITPFAREKDWDFTFALQ 158
Query: 212 DLESLDG--KYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRV 269
D+ D + +L + +A +A L SL R+ +SF ++ L R
Sbjct: 159 DVLCAPPAEAGDLALIFKLLPLLEREQAGSAMALLQSLNTPRMAVSFPTRS----LGGRG 214
Query: 270 GELFPGPSKATRAYLHAEADVERALQKVGWKIRKRGLITTQFYFAR 315
+ + E L K+ + T Y +
Sbjct: 215 KGMEANYAAW----------FEGGLPAEFEIEDKKTIGTELIYLIK 250
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* Length = 340 | Back alignment and structure |
|---|
Score = 40.8 bits (95), Expect = 3e-04
Identities = 34/178 (19%), Positives = 63/178 (35%), Gaps = 46/178 (25%)
Query: 140 MLNDE--------------GSLKGIAVCDAGCGTGSLAIPLAKQGAI-VSASDISAAMVA 184
ML D+ K V D GCGTG L++ AK GA V D S +
Sbjct: 42 MLKDKIRTESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEIL-Y 100
Query: 185 EARKKAEEELLADNGGEAPVMP-KFEVKDLESLDGKYDTVVC--LDVLIHYPQSKADGMI 241
+A ++ N E + K +++++ K D ++ + + + + M+
Sbjct: 101 QAMD-----IIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMGYFLLF-----ESML 150
Query: 242 AHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQKVGW 299
+ K L + G ++P L A +DV + ++ +
Sbjct: 151 DSVLYAKNK--------------YLAKGGSVYP---DICTISLVAVSDVNKHADRIAF 191
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} Length = 215 | Back alignment and structure |
|---|
Score = 40.2 bits (95), Expect = 3e-04
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Query: 134 VENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAE 191
VE ++ L S G V D G G+G +A+ +A G V+A D+S +A AR+ AE
Sbjct: 18 VEEAIRFLKRMPS--GTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAE 75
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} Length = 369 | Back alignment and structure |
|---|
Score = 40.7 bits (96), Expect = 4e-04
Identities = 22/114 (19%), Positives = 43/114 (37%), Gaps = 24/114 (21%)
Query: 152 VCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARK---------------KAEEELLA 196
+ + CG G+ ++ LA+ V A++I+ VA A+ AEE A
Sbjct: 217 LLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQA 276
Query: 197 DNGGEAPVMPKFEVKDLESLDGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEK 250
NG ++ ++ + +T+ +D P+S D + +
Sbjct: 277 MNGVR----EFNRLQGIDLKSYQCETIF-VDP----PRSGLDSETEKMVQAYPR 321
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* Length = 313 | Back alignment and structure |
|---|
Score = 40.7 bits (94), Expect = 4e-04
Identities = 19/106 (17%), Positives = 35/106 (33%), Gaps = 11/106 (10%)
Query: 143 DEGSLKGIAVCDAGCGTGSLAIPLAKQGA-IVSASDISAAMVAEARKKAEEELLADNGGE 201
+ + I V D GCG G + K + +DI+ V + +++ E++ E
Sbjct: 29 RQKKKRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRY-EDMKNRRDSE 87
Query: 202 APVMPKFEVKDLESL---------DGKYDTVVCLDVLIHYPQSKAD 238
+F D +D C V + +S
Sbjct: 88 YIFSAEFITADSSKELLIDKFRDPQMCFDICSCQFVCHYSFESYEQ 133
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* Length = 349 | Back alignment and structure |
|---|
Score = 40.4 bits (94), Expect = 5e-04
Identities = 38/198 (19%), Positives = 61/198 (30%), Gaps = 44/198 (22%)
Query: 140 MLNDE--------------GSLKGIAVCDAGCGTGSLAIPLAKQGAI-VSASDISAAMVA 184
+L DE K V D G GTG L + AK GA V + S+
Sbjct: 44 LLKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSIS-- 101
Query: 185 EARKKAEEELLADNGGEAPVMP-KFEVKDLESLDGKYDTVVCLDVLIHYPQSKADGMIAH 243
+++ N + V K +V+++E K D ++
Sbjct: 102 ----DYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIIS--------------EWMG 143
Query: 244 LASLAEKRL-ILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQKVGWKIR 302
E L + A + L G +FP Y+ A D + K+ W
Sbjct: 144 YCLFYESMLNTVLHARDKW----LAPDGLIFP---DRATLYVTAIEDRQYKDYKIHWWEN 196
Query: 303 KRGLITTQFYFARLVEAV 320
G + + E +
Sbjct: 197 VYGFDMSCIKDVAIKEPL 214
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* Length = 284 | Back alignment and structure |
|---|
Score = 39.8 bits (94), Expect = 6e-04
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 4/59 (6%)
Query: 134 VENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ-GAIVSASDISAAMVAEARKKAE 191
VE ++++ G V D G G+G++ + +AK AIV A+D+S+ V ARK AE
Sbjct: 112 VELALELIRKYGIKT---VADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAE 167
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} Length = 170 | Back alignment and structure |
|---|
Score = 39.0 bits (91), Expect = 6e-04
Identities = 19/94 (20%), Positives = 32/94 (34%), Gaps = 8/94 (8%)
Query: 146 SLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEE--LLADNGGEAP 203
L+ V D G TG + L K+ V ++D++ + R LL E+
Sbjct: 21 GLEMKIVLDLGTSTGVITEQLRKR-NTVVSTDLNIRALESHRGGNLVRADLLCSINQESV 79
Query: 204 VM-----PKFEVKDLESLDGKYDTVVCLDVLIHY 232
+ P D + G Y +D +
Sbjct: 80 DVVVFNPPYVPDTDDPIIGGGYLGREVIDRFVDA 113
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} PDB: 1kpi_A* Length = 302 | Back alignment and structure |
|---|
Score = 39.9 bits (94), Expect = 7e-04
Identities = 14/72 (19%), Positives = 22/72 (30%), Gaps = 8/72 (11%)
Query: 154 DAGCGTGSLAIPLAKQ-GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKD 212
D GCG GS + V +S A + +E + ++
Sbjct: 78 DIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRR-------KEVRIQG 130
Query: 213 LESLDGKYDTVV 224
E D D +V
Sbjct: 131 WEEFDEPVDRIV 142
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 322 | |||
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.86 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.85 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.85 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.84 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.84 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.84 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.84 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.83 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.83 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.83 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.83 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.83 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.83 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.83 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.82 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.82 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.82 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.82 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.81 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.81 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.81 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.81 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.8 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.8 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.8 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.8 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.8 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.8 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.8 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.8 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.79 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.79 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.78 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.78 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.77 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.77 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.77 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.77 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.77 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.77 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.77 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.76 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.76 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.76 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.76 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.76 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.76 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.76 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.75 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.75 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.75 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.75 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.75 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.74 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.74 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.74 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.74 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.74 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.73 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.73 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.73 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.73 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.73 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.73 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.72 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 99.72 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.72 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.71 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.71 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.71 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.7 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.7 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.7 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.7 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.7 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.69 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 99.69 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 99.68 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 99.68 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.68 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.68 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.68 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 99.68 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 99.68 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 99.68 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 99.68 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 99.67 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.65 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.65 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 99.63 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.63 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.62 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.62 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.61 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.61 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.61 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 99.61 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 99.6 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.6 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.6 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.59 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.59 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.58 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.58 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.58 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 99.57 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.57 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.57 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.57 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.56 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.56 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.56 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.56 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.56 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 99.56 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.55 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 99.55 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 99.55 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.55 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 99.54 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 99.54 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.54 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.54 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 99.53 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 99.52 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 99.52 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.52 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.52 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.52 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.52 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.52 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 99.52 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.52 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 99.52 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.51 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.51 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.51 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.5 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 99.49 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.49 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.49 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.49 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.49 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.48 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.48 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.48 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.47 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.47 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.47 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 99.47 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 99.46 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 99.46 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.46 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.46 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.46 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.46 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 99.45 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.45 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.45 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.45 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.44 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 99.44 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.44 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 99.44 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.44 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.44 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.44 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.43 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.43 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.43 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.43 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.43 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 99.42 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.42 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.42 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.41 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.4 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.4 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.4 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 99.39 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.39 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.39 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 99.38 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 99.38 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 99.37 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 99.37 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 99.37 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.36 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 99.35 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 99.34 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.34 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 99.34 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.34 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 99.33 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 99.33 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 99.33 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 99.33 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 99.33 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 99.32 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.32 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 99.32 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 99.31 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 99.31 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 99.3 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 99.3 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 99.3 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 99.29 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.28 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 99.28 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 99.28 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 99.26 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 99.25 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 99.25 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 99.25 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 99.25 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 99.24 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 99.23 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 99.22 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 99.22 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.22 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 99.22 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 99.21 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 99.21 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 99.21 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 99.2 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 99.2 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 99.2 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 99.19 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 99.19 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 99.18 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 99.18 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 99.17 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 99.16 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 99.16 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.15 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 99.15 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 99.14 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 99.14 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 99.13 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 99.12 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 99.12 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 99.12 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 99.11 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 99.11 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 99.09 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 99.08 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.08 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 99.06 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 99.03 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 99.02 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 99.01 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 98.98 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 98.98 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 98.98 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 98.97 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 98.96 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 98.92 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 98.88 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 98.86 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 98.85 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 98.82 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 98.82 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 98.81 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 98.8 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 98.79 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 98.76 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 98.73 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 98.71 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 98.69 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 98.69 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 98.69 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.66 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 98.56 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 98.53 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 98.48 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 98.44 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 98.44 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.42 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 98.39 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 98.38 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 98.31 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 98.29 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 98.26 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 98.19 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 98.19 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 98.16 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 98.13 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 98.05 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 97.97 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 97.95 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 97.83 | |
| 1rjd_A | 334 | PPM1P, carboxy methyl transferase for protein phos | 97.78 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 97.67 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 97.57 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 97.55 | |
| 1g55_A | 343 | DNA cytosine methyltransferase DNMT2; human DNA me | 97.54 | |
| 2uyo_A | 310 | Hypothetical protein ML2640; putative methyltransf | 97.52 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 97.51 | |
| 3tka_A | 347 | Ribosomal RNA small subunit methyltransferase H; H | 97.5 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 97.44 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 97.44 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 97.41 | |
| 3g7u_A | 376 | Cytosine-specific methyltransferase; DNA-binding, | 97.38 | |
| 2c7p_A | 327 | Modification methylase HHAI; DNA methyltransferase | 97.22 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 97.18 | |
| 3iei_A | 334 | Leucine carboxyl methyltransferase 1; LCMT-1, S-ad | 97.17 | |
| 3qv2_A | 327 | 5-cytosine DNA methyltransferase; DNMT2, ehmeth; H | 97.05 | |
| 3ubt_Y | 331 | Modification methylase HAEIII; protein-DNA complex | 96.92 | |
| 1i4w_A | 353 | Mitochondrial replication protein MTF1; mitochondr | 96.9 | |
| 3vyw_A | 308 | MNMC2; tRNA wobble uridine, modification enzyme, g | 96.88 | |
| 4h0n_A | 333 | DNMT2; SAH binding, transferase; HET: SAH; 2.71A { | 96.85 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 96.35 | |
| 2oo3_A | 283 | Protein involved in catabolism of external DNA; st | 96.29 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 96.09 | |
| 3me5_A | 482 | Cytosine-specific methyltransferase; structural ge | 96.08 | |
| 2qrv_A | 295 | DNA (cytosine-5)-methyltransferase 3A; DNA methylt | 95.87 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 95.31 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 95.15 | |
| 1zkd_A | 387 | DUF185; NESG, RPR58, structural genomics, PSI, pro | 94.83 | |
| 3ado_A | 319 | Lambda-crystallin; L-gulonate 3-dehydrogenase, str | 94.78 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 94.72 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 94.72 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 94.5 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 94.4 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 94.33 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 94.26 | |
| 2py6_A | 409 | Methyltransferase FKBM; YP_546752.1, structural ge | 94.23 | |
| 3swr_A | 1002 | DNA (cytosine-5)-methyltransferase 1; epigenetics, | 93.88 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 93.77 | |
| 3qiv_A | 253 | Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR | 93.31 | |
| 2dpo_A | 319 | L-gulonate 3-dehydrogenase; structural genomics, N | 93.27 | |
| 4ft4_B | 784 | DNA (cytosine-5)-methyltransferase 1; chromodomain | 93.19 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 93.07 | |
| 3lyl_A | 247 | 3-oxoacyl-(acyl-carrier-protein) reductase; alpha | 92.89 | |
| 3ucx_A | 264 | Short chain dehydrogenase; ssgcid, seattle structu | 92.83 | |
| 3rkr_A | 262 | Short chain oxidoreductase; rossmann fold; HET: NA | 92.53 | |
| 4f3n_A | 432 | Uncharacterized ACR, COG1565 superfamily; structur | 92.39 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 92.37 | |
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 92.3 | |
| 4dkj_A | 403 | Cytosine-specific methyltransferase; CG-specificit | 92.27 | |
| 3tjr_A | 301 | Short chain dehydrogenase; structural genomics, se | 92.27 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 91.9 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 91.87 | |
| 3t7c_A | 299 | Carveol dehydrogenase; structural genomics, seattl | 91.83 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 91.82 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 91.77 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 91.74 | |
| 3ioy_A | 319 | Short-chain dehydrogenase/reductase SDR; structura | 91.72 | |
| 3sju_A | 279 | Keto reductase; short-chain dehydrogenase, oxidore | 91.63 | |
| 3imf_A | 257 | Short chain dehydrogenase; structural genomics, in | 91.45 | |
| 3h7a_A | 252 | Short chain dehydrogenase; oxidoreductase, PSI-2, | 91.32 | |
| 3tfo_A | 264 | Putative 3-oxoacyl-(acyl-carrier-protein) reducta; | 91.27 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 91.11 | |
| 3uve_A | 286 | Carveol dehydrogenase ((+)-trans-carveol dehydrog; | 91.07 | |
| 3pxx_A | 287 | Carveol dehydrogenase; structural genomics, seattl | 91.05 | |
| 1iy8_A | 267 | Levodione reductase; oxidoreductase; HET: NAD; 1.6 | 90.98 | |
| 3svt_A | 281 | Short-chain type dehydrogenase/reductase; ssgcid, | 90.94 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 90.89 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 90.88 | |
| 3pgx_A | 280 | Carveol dehydrogenase; structural genomics, seattl | 90.69 | |
| 1zem_A | 262 | Xylitol dehydrogenase; rossmann fold, dinucleotide | 90.61 | |
| 1xg5_A | 279 | ARPG836; short chain dehydrogenase, human, SGC, st | 90.53 | |
| 3cxt_A | 291 | Dehydrogenase with different specificities; rossma | 90.51 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 90.5 | |
| 3v8b_A | 283 | Putative dehydrogenase, possibly 3-oxoacyl-[acyl- | 90.48 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 90.47 | |
| 3sx2_A | 278 | Putative 3-ketoacyl-(acyl-carrier-protein) reduct; | 90.45 | |
| 3awd_A | 260 | GOX2181, putative polyol dehydrogenase; oxidoreduc | 90.42 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 90.33 | |
| 2ae2_A | 260 | Protein (tropinone reductase-II); oxidoreductase, | 90.24 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 90.23 | |
| 2jah_A | 247 | Clavulanic acid dehydrogenase; short-chain dehydro | 90.21 | |
| 1xkq_A | 280 | Short-chain reductase family member (5D234); parra | 89.99 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 89.97 | |
| 3r1i_A | 276 | Short-chain type dehydrogenase/reductase; structur | 89.95 | |
| 4ibo_A | 271 | Gluconate dehydrogenase; enzyme function initiativ | 89.87 | |
| 3gaf_A | 256 | 7-alpha-hydroxysteroid dehydrogenase; seattle stru | 89.86 | |
| 1yb1_A | 272 | 17-beta-hydroxysteroid dehydrogenase type XI; shor | 89.84 | |
| 1ae1_A | 273 | Tropinone reductase-I; oxidoreductase, tropane alk | 89.81 | |
| 3av4_A | 1330 | DNA (cytosine-5)-methyltransferase 1; CXXC-type zi | 89.79 | |
| 3tos_A | 257 | CALS11; methyltransferase, calicheamicin, structur | 89.79 | |
| 4egf_A | 266 | L-xylulose reductase; structural genomics, ssgcid, | 89.62 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 89.59 | |
| 3s55_A | 281 | Putative short-chain dehydrogenase/reductase; stru | 89.47 | |
| 1xhl_A | 297 | Short-chain dehydrogenase/reductase family member | 89.43 | |
| 2rhc_B | 277 | Actinorhodin polyketide ketoreductase; oxidoreduct | 89.29 | |
| 3tox_A | 280 | Short chain dehydrogenase; structural genomics, PS | 89.25 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 89.17 | |
| 1geg_A | 256 | Acetoin reductase; SDR family, oxidoreductase; HET | 89.15 | |
| 3lf2_A | 265 | Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross | 88.99 | |
| 3ftp_A | 270 | 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid | 88.99 | |
| 2cfc_A | 250 | 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor | 88.98 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 88.98 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 88.96 | |
| 4e6p_A | 259 | Probable sorbitol dehydrogenase (L-iditol 2-dehyd; | 88.92 | |
| 3op4_A | 248 | 3-oxoacyl-[acyl-carrier protein] reductase; 3-keto | 88.84 | |
| 4eso_A | 255 | Putative oxidoreductase; NADP, structural genomics | 88.74 | |
| 3ai3_A | 263 | NADPH-sorbose reductase; rossmann-fold, NADPH-depe | 88.7 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 88.67 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 88.63 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 88.62 | |
| 4fc7_A | 277 | Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman | 88.61 | |
| 2f1k_A | 279 | Prephenate dehydrogenase; tyrosine synthesis, X-RA | 88.58 | |
| 3grk_A | 293 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 88.56 | |
| 3l77_A | 235 | Short-chain alcohol dehydrogenase; oxidoreductase; | 88.49 | |
| 3ctm_A | 279 | Carbonyl reductase; alcohol dehydrogenase, short-c | 88.46 | |
| 3nyw_A | 250 | Putative oxidoreductase; fatty acid synthesis,3-ox | 88.43 | |
| 3f9i_A | 249 | 3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto | 88.38 | |
| 2zat_A | 260 | Dehydrogenase/reductase SDR family member 4; alpha | 88.36 | |
| 3ek2_A | 271 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 88.35 | |
| 3t4x_A | 267 | Oxidoreductase, short chain dehydrogenase/reducta; | 88.3 | |
| 3rwb_A | 247 | TPLDH, pyridoxal 4-dehydrogenase; short chain dehy | 88.09 | |
| 1f0y_A | 302 | HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive | 88.08 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 88.07 | |
| 3edm_A | 259 | Short chain dehydrogenase; structural genomics, ox | 88.04 | |
| 4imr_A | 275 | 3-oxoacyl-(acyl-carrier-protein) reductase; oxidor | 87.85 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 87.73 | |
| 4dmm_A | 269 | 3-oxoacyl-[acyl-carrier-protein] reductase; rossma | 87.7 | |
| 3tsc_A | 277 | Putative oxidoreductase; structural genomics, seat | 87.65 | |
| 2b4q_A | 276 | Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier | 87.65 | |
| 1xq1_A | 266 | Putative tropinone reducatse; structural genomics, | 87.57 | |
| 4da9_A | 280 | Short-chain dehydrogenase/reductase; structural ge | 87.53 | |
| 2uvd_A | 246 | 3-oxoacyl-(acyl-carrier-protein) reductase; beta-k | 87.47 | |
| 3oid_A | 258 | Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa | 87.44 | |
| 3f1l_A | 252 | Uncharacterized oxidoreductase YCIK; E. coli, NADP | 87.35 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 87.26 | |
| 3uf0_A | 273 | Short-chain dehydrogenase/reductase SDR; gluconate | 87.1 | |
| 3d1l_A | 266 | Putative NADP oxidoreductase BF3122; structural ge | 87.0 | |
| 3oec_A | 317 | Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; | 86.98 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 86.93 | |
| 1w6u_A | 302 | 2,4-dienoyl-COA reductase, mitochondrial precursor | 86.91 | |
| 3l6e_A | 235 | Oxidoreductase, short-chain dehydrogenase/reducta; | 86.9 | |
| 3k6j_A | 460 | Protein F01G10.3, confirmed by transcript evidenc; | 86.89 | |
| 1e7w_A | 291 | Pteridine reductase; dihydrofolate reductase, shor | 86.88 | |
| 3n74_A | 261 | 3-ketoacyl-(acyl-carrier-protein) reductase; seatt | 86.77 | |
| 3ged_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 86.77 | |
| 3pk0_A | 262 | Short-chain dehydrogenase/reductase SDR; ssgcid, s | 86.77 | |
| 4iin_A | 271 | 3-ketoacyl-acyl carrier protein reductase (FABG); | 86.59 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 86.5 | |
| 1yxm_A | 303 | Pecra, peroxisomal trans 2-enoyl COA reductase; pe | 86.44 | |
| 2gdz_A | 267 | NAD+-dependent 15-hydroxyprostaglandin dehydrogen; | 86.37 | |
| 3mog_A | 483 | Probable 3-hydroxybutyryl-COA dehydrogenase; struc | 86.31 | |
| 3a28_C | 258 | L-2.3-butanediol dehydrogenase; chiral substrate r | 86.28 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 86.12 | |
| 3tqh_A | 321 | Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella | 86.12 | |
| 1vl8_A | 267 | Gluconate 5-dehydrogenase; TM0441, structural geno | 86.08 | |
| 1x1t_A | 260 | D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S | 86.01 | |
| 3k31_A | 296 | Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI | 85.97 | |
| 1fmc_A | 255 | 7 alpha-hydroxysteroid dehydrogenase; short-chain | 85.77 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 85.76 | |
| 3rih_A | 293 | Short chain dehydrogenase or reductase; structural | 85.74 | |
| 4fs3_A | 256 | Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; | 85.7 | |
| 2qq5_A | 260 | DHRS1, dehydrogenase/reductase SDR family member 1 | 85.64 | |
| 3ijr_A | 291 | Oxidoreductase, short chain dehydrogenase/reducta; | 85.61 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 85.58 | |
| 4dry_A | 281 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 85.5 | |
| 4dqx_A | 277 | Probable oxidoreductase protein; structural genomi | 85.46 | |
| 3i1j_A | 247 | Oxidoreductase, short chain dehydrogenase/reducta; | 85.38 | |
| 1gee_A | 261 | Glucose 1-dehydrogenase; short-chain dehydrogenase | 85.36 | |
| 4e3z_A | 272 | Putative oxidoreductase protein; PSI-biology, stru | 85.33 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 85.28 | |
| 3o26_A | 311 | Salutaridine reductase; short chain dehydrogenase/ | 85.28 | |
| 3tri_A | 280 | Pyrroline-5-carboxylate reductase; amino acid bios | 85.27 | |
| 1wma_A | 276 | Carbonyl reductase [NADPH] 1; oxidoreductase; HET: | 85.18 | |
| 1zcj_A | 463 | Peroxisomal bifunctional enzyme; peroxisomal multi | 85.15 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 85.05 | |
| 2qhx_A | 328 | Pteridine reductase 1; oxidoreductase, short-chain | 84.94 | |
| 3osu_A | 246 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 84.92 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 84.92 | |
| 3goh_A | 315 | Alcohol dehydrogenase, zinc-containing; NP_718042. | 84.92 | |
| 3gvc_A | 277 | Oxidoreductase, probable short-chain type dehydrog | 84.85 | |
| 2z1n_A | 260 | Dehydrogenase; reductase, SDR, oxidoreductase; 1.8 | 84.84 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 84.76 | |
| 3qlj_A | 322 | Short chain dehydrogenase; structural genomics, se | 84.73 | |
| 3e03_A | 274 | Short chain dehydrogenase; structural genomics, PS | 84.72 | |
| 1xu9_A | 286 | Corticosteroid 11-beta-dehydrogenase, isozyme 1; h | 84.62 | |
| 2wtb_A | 725 | MFP2, fatty acid multifunctional protein (ATMFP2); | 84.57 | |
| 2g5c_A | 281 | Prephenate dehydrogenase; TYRA, oxidoreductase; HE | 84.46 | |
| 3afn_B | 258 | Carbonyl reductase; alpha/beta/alpha, rossmann-fol | 84.45 | |
| 3is3_A | 270 | 17BETA-hydroxysteroid dehydrogenase; short chain d | 84.4 | |
| 1spx_A | 278 | Short-chain reductase family member (5L265); paral | 84.36 | |
| 1zej_A | 293 | HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural | 84.34 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 84.32 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 84.27 | |
| 2c07_A | 285 | 3-oxoacyl-(acyl-carrier protein) reductase; oxidor | 84.2 | |
| 1cyd_A | 244 | Carbonyl reductase; short-chain dehydrogenase, oxi | 84.12 | |
| 2pnf_A | 248 | 3-oxoacyl-[acyl-carrier-protein] reductase; short | 83.95 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 83.95 | |
| 1edo_A | 244 | Beta-keto acyl carrier protein reductase; nucleoti | 83.82 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 83.74 | |
| 3v2h_A | 281 | D-beta-hydroxybutyrate dehydrogenase; structural g | 83.74 | |
| 3sc4_A | 285 | Short chain dehydrogenase (A0QTM2 homolog); ssgcid | 83.71 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 83.67 | |
| 3i4f_A | 264 | 3-oxoacyl-[acyl-carrier protein] reductase; struct | 83.61 | |
| 3tzq_B | 271 | Short-chain type dehydrogenase/reductase; ssgcid, | 83.57 | |
| 1jay_A | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma | 83.45 | |
| 4hp8_A | 247 | 2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi | 83.44 | |
| 3nrc_A | 280 | Enoyl-[acyl-carrier-protein] reductase (NADH); ros | 83.34 | |
| 1bg6_A | 359 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L | 83.2 | |
| 1nff_A | 260 | Putative oxidoreductase RV2002; directed evolution | 83.17 |
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=3.9e-21 Score=169.22 Aligned_cols=163 Identities=18% Similarity=0.180 Sum_probs=117.4
Q ss_pred CCCCCeEEEECCCcccchHHHHhc----CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-CCCc
Q 020710 146 SLKGIAVCDAGCGTGSLAIPLAKQ----GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-DGKY 220 (322)
Q Consensus 146 ~~~~~~VLDvGcG~G~~~~~la~~----~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~f 220 (322)
..++.+|||||||+|.++..+++. +++|+|||+|+.|++.|++++...+...++ +|+++|+.++ .+.|
T Consensus 68 ~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v-------~~~~~D~~~~~~~~~ 140 (261)
T 4gek_A 68 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPV-------DVIEGDIRDIAIENA 140 (261)
T ss_dssp CCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCE-------EEEESCTTTCCCCSE
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceE-------EEeeccccccccccc
Confidence 356889999999999999999875 679999999999999999999877655444 8999999887 4779
Q ss_pred cEEEEcccccccCcchHHHHHHHHHhccCCeEEEEECC-----ChhhHHHHHHhhc---cCCCCCCc----------ccc
Q 020710 221 DTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAP-----KTFYYDLLKRVGE---LFPGPSKA----------TRA 282 (322)
Q Consensus 221 D~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~-----~~~~~~~~~~~~~---~~~~~~~~----------~~~ 282 (322)
|+|++..+++|+++++...+++++++++++||++.+.. ..........+.. ...+.... ...
T Consensus 141 d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~g~s~~ei~~~~~~l~~~~ 220 (261)
T 4gek_A 141 SMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGELLFNMHHDFKRANGYSELEISQKRSMLENVM 220 (261)
T ss_dssp EEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCSSHHHHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHC
T ss_pred ccceeeeeeeecCchhHhHHHHHHHHHcCCCcEEEEEeccCCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhcccc
Confidence 99999999999998777889999999988888665531 1111111111000 00000000 001
Q ss_pred ccCCHHHHHHHHHHCCCEEEEEeeeecceehhhhh
Q 020710 283 YLHAEADVERALQKVGWKIRKRGLITTQFYFARLV 317 (322)
Q Consensus 283 ~~~~~~~~~~~l~~aGf~vv~~~~~~~~~~f~~~~ 317 (322)
...+.+++.++|+++||+.++.... .++|..++
T Consensus 221 ~~~s~~~~~~~L~~AGF~~ve~~fq--~~nF~~~i 253 (261)
T 4gek_A 221 LTDSVETHKARLHKAGFEHSELWFQ--CFNFGSLV 253 (261)
T ss_dssp CCBCHHHHHHHHHHHTCSEEEEEEE--ETTEEEEE
T ss_pred cCCCHHHHHHHHHHcCCCeEEEEEE--eccEEEEE
Confidence 1347899999999999998876543 44555444
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.85 E-value=8.3e-21 Score=166.85 Aligned_cols=170 Identities=18% Similarity=0.239 Sum_probs=128.3
Q ss_pred HHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEccc
Q 020710 134 VENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDL 213 (322)
Q Consensus 134 ~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~ 213 (322)
++.+++.+... ++.+|||||||+|.++..+++.+.+|+|+|+|+.|++.++++....+..+ +.|+++|+
T Consensus 26 ~~~l~~~l~~~---~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~--------v~~~~~d~ 94 (260)
T 1vl5_A 26 LAKLMQIAALK---GNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGHQQ--------VEYVQGDA 94 (260)
T ss_dssp HHHHHHHHTCC---SCCEEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCCS--------EEEEECCC
T ss_pred HHHHHHHhCCC---CCCEEEEEeCCCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcCCCc--------eEEEEecH
Confidence 35666666543 67899999999999999999998899999999999999999987765432 38999999
Q ss_pred ccC---CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEEC----CCh-hhHHHHHHhhccCCCCCCccccccC
Q 020710 214 ESL---DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFA----PKT-FYYDLLKRVGELFPGPSKATRAYLH 285 (322)
Q Consensus 214 ~~~---~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (322)
.++ +++||+|+|..+++|+++. ..+++++++++++||.+.+. +.. ....+...+..... ..+...+
T Consensus 95 ~~l~~~~~~fD~V~~~~~l~~~~d~--~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 168 (260)
T 1vl5_A 95 EQMPFTDERFHIVTCRIAAHHFPNP--ASFVSEAYRVLKKGGQLLLVDNSAPENDAFDVFYNYVEKERD----YSHHRAW 168 (260)
T ss_dssp -CCCSCTTCEEEEEEESCGGGCSCH--HHHHHHHHHHEEEEEEEEEEEEEBCSSHHHHHHHHHHHHHHC----TTCCCCC
T ss_pred HhCCCCCCCEEEEEEhhhhHhcCCH--HHHHHHHHHHcCCCCEEEEEEcCCCCCHHHHHHHHHHHHhcC----ccccCCC
Confidence 875 5899999999999999984 49999999998777766542 222 22222222221111 1123356
Q ss_pred CHHHHHHHHHHCCCEEEEEeeeecceehhhhhhhc
Q 020710 286 AEADVERALQKVGWKIRKRGLITTQFYFARLVEAV 320 (322)
Q Consensus 286 ~~~~~~~~l~~aGf~vv~~~~~~~~~~f~~~~~~~ 320 (322)
+.+++.++|+++||+++........+.|....+.+
T Consensus 169 ~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~ 203 (260)
T 1vl5_A 169 KKSDWLKMLEEAGFELEELHCFHKTFIFEDWCDRM 203 (260)
T ss_dssp BHHHHHHHHHHHTCEEEEEEEEEEEEEHHHHHHHT
T ss_pred CHHHHHHHHHHCCCeEEEEEEeeccCCHHHHHHhc
Confidence 89999999999999999988887778887766543
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.85 E-value=3.2e-20 Score=165.35 Aligned_cols=151 Identities=25% Similarity=0.292 Sum_probs=113.1
Q ss_pred CCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC----CCCccEE
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL----DGKYDTV 223 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~~fD~V 223 (322)
++.+|||||||+|.++..+++.+.+|+|+|+|+.|++.+++++...+...++ .++++|+.++ +++||+|
T Consensus 68 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v-------~~~~~d~~~~~~~~~~~fD~v 140 (285)
T 4htf_A 68 QKLRVLDAGGGEGQTAIKMAERGHQVILCDLSAQMIDRAKQAAEAKGVSDNM-------QFIHCAAQDVASHLETPVDLI 140 (285)
T ss_dssp SCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHC-CCGGGE-------EEEESCGGGTGGGCSSCEEEE
T ss_pred CCCEEEEeCCcchHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcce-------EEEEcCHHHhhhhcCCCceEE
Confidence 3679999999999999999999999999999999999999999877654333 8999998775 5899999
Q ss_pred EEcccccccCcchHHHHHHHHHhccCCeEEEEECCChhhHHH--------HHHhhccCCC--CCCccccccCCHHHHHHH
Q 020710 224 VCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDL--------LKRVGELFPG--PSKATRAYLHAEADVERA 293 (322)
Q Consensus 224 ~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~--------~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 293 (322)
+|..+++|++++ ..+++++++++++||++.+......... ...+...... .....+.++++.+++.++
T Consensus 141 ~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 218 (285)
T 4htf_A 141 LFHAVLEWVADP--RSVLQTLWSVLRPGGVLSLMFYNAHGLLMHNMVAGNFDYVQAGMPKKKKRTLSPDYPRDPTQVYLW 218 (285)
T ss_dssp EEESCGGGCSCH--HHHHHHHHHTEEEEEEEEEEEEBHHHHHHHHHHTTCHHHHHTTCCCC----CCCSCCBCHHHHHHH
T ss_pred EECchhhcccCH--HHHHHHHHHHcCCCeEEEEEEeCCchHHHHHHHhcCHHHHhhhccccccccCCCCCCCCHHHHHHH
Confidence 999999999984 5999999999887776655322111100 0111111111 111223346799999999
Q ss_pred HHHCCCEEEEEeee
Q 020710 294 LQKVGWKIRKRGLI 307 (322)
Q Consensus 294 l~~aGf~vv~~~~~ 307 (322)
++++||++++...+
T Consensus 219 l~~aGf~v~~~~~~ 232 (285)
T 4htf_A 219 LEEAGWQIMGKTGV 232 (285)
T ss_dssp HHHTTCEEEEEEEE
T ss_pred HHHCCCceeeeeeE
Confidence 99999999987655
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.5e-20 Score=160.77 Aligned_cols=161 Identities=19% Similarity=0.166 Sum_probs=116.5
Q ss_pred HHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEccc
Q 020710 134 VENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDL 213 (322)
Q Consensus 134 ~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~ 213 (322)
...+++.+... ++.+|||||||+|.++..+++.+.+|+|+|+|+.|++.++++.. .+ +.++++|+
T Consensus 34 ~~~~l~~~~~~---~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~-----~~-------~~~~~~d~ 98 (220)
T 3hnr_A 34 YEDILEDVVNK---SFGNVLEFGVGTGNLTNKLLLAGRTVYGIEPSREMRMIAKEKLP-----KE-------FSITEGDF 98 (220)
T ss_dssp HHHHHHHHHHT---CCSEEEEECCTTSHHHHHHHHTTCEEEEECSCHHHHHHHHHHSC-----TT-------CCEESCCS
T ss_pred HHHHHHHhhcc---CCCeEEEeCCCCCHHHHHHHhCCCeEEEEeCCHHHHHHHHHhCC-----Cc-------eEEEeCCh
Confidence 35666666654 57899999999999999999999999999999999999998865 11 28999998
Q ss_pred ccC--CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEEC-CCh----hhHHHHHHhhccCC-C-CCCcccccc
Q 020710 214 ESL--DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFA-PKT----FYYDLLKRVGELFP-G-PSKATRAYL 284 (322)
Q Consensus 214 ~~~--~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~-~~~----~~~~~~~~~~~~~~-~-~~~~~~~~~ 284 (322)
.++ .++||+|+|..+++|++++....+++++.+++++||.+.+. +.. .............. . .....+.++
T Consensus 99 ~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (220)
T 3hnr_A 99 LSFEVPTSIDTIVSTYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTIFADQDAYDKTVEAAKQRGFHQLANDLQTEYY 178 (220)
T ss_dssp SSCCCCSCCSEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEEECBSSHHHHHHHHHHHHHTTCHHHHHHHHHSCC
T ss_pred hhcCCCCCeEEEEECcchhcCChHHHHHHHHHHHHhcCCCCEEEEEeccccChHHHHHHHHHHHhCCCccchhhcchhhc
Confidence 876 47999999999999999876556999999987666655432 111 11111111111100 0 011122345
Q ss_pred CCHHHHHHHHHHCCCEEEEEeeeec
Q 020710 285 HAEADVERALQKVGWKIRKRGLITT 309 (322)
Q Consensus 285 ~~~~~~~~~l~~aGf~vv~~~~~~~ 309 (322)
++.+++.++++++||+++.......
T Consensus 179 ~~~~~~~~~l~~aGf~v~~~~~~~~ 203 (220)
T 3hnr_A 179 TRIPVMQTIFENNGFHVTFTRLNHF 203 (220)
T ss_dssp CBHHHHHHHHHHTTEEEEEEECSSS
T ss_pred CCHHHHHHHHHHCCCEEEEeeccce
Confidence 6899999999999999988766543
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.84 E-value=1.1e-19 Score=162.75 Aligned_cols=196 Identities=17% Similarity=0.183 Sum_probs=135.6
Q ss_pred hHHHHHHhchh-hHHHHHHHhcCCC-cccch-----hhhhhcCchhHHHHHHHHhhhc-CCCCCCeEEEECCCcccchHH
Q 020710 94 KEVVREYFNNS-GFQRWKKIYGETD-DVNRV-----QLDIRLGHSKTVENTMQMLNDE-GSLKGIAVCDAGCGTGSLAIP 165 (322)
Q Consensus 94 ~~~v~~~f~~~-~~~~w~~~y~~~~-~~~~~-----~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~VLDvGcG~G~~~~~ 165 (322)
.+.+++|||.. +-+.|...++... ..... ...........++.+++.+... ...++.+|||||||+|.++..
T Consensus 20 ~~~~~~~Yd~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~vLDiGcG~G~~~~~ 99 (297)
T 2o57_A 20 KDNAEIYYDDDDSDRFYFHVWGGEDIHVGLYKEPVDQDEIREASLRTDEWLASELAMTGVLQRQAKGLDLGAGYGGAARF 99 (297)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHTTSCCCSCCCCSSGGGSCHHHHHHHHHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHH
T ss_pred HHHHHHHcCCccchhHHHHHhCCCceEEEecCCCCCCcchHHHHHHHHHHHHHHhhhccCCCCCCEEEEeCCCCCHHHHH
Confidence 45678899876 3455555553211 11110 1112222334455666666200 124678999999999999999
Q ss_pred HHhc-CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC---CCCccEEEEcccccccCcchHHHHH
Q 020710 166 LAKQ-GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL---DGKYDTVVCLDVLIHYPQSKADGMI 241 (322)
Q Consensus 166 la~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~fD~V~~~~~l~~~~~~~~~~~l 241 (322)
+++. +++|+|+|+|+.|++.++++....+...++ .++++|+.++ +++||+|++..+++|+++ ...++
T Consensus 100 l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~-------~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~--~~~~l 170 (297)
T 2o57_A 100 LVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNI-------TVKYGSFLEIPCEDNSYDFIWSQDAFLHSPD--KLKVF 170 (297)
T ss_dssp HHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTE-------EEEECCTTSCSSCTTCEEEEEEESCGGGCSC--HHHHH
T ss_pred HHHHhCCEEEEEeCCHHHHHHHHHHHHhcCCCcce-------EEEEcCcccCCCCCCCEeEEEecchhhhcCC--HHHHH
Confidence 9987 889999999999999999998877765433 8999998876 578999999999999998 56999
Q ss_pred HHHHhccCCeEEEEECC----Ch----hhHHHHHHhhccCCCCCCccccccCCHHHHHHHHHHCCCEEEEEeeee
Q 020710 242 AHLASLAEKRLILSFAP----KT----FYYDLLKRVGELFPGPSKATRAYLHAEADVERALQKVGWKIRKRGLIT 308 (322)
Q Consensus 242 ~~l~~~~~~~~il~~~~----~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~vv~~~~~~ 308 (322)
+++++++++||.+.+.. .. ....+.... . ...+.+.+++.++++++||++++.....
T Consensus 171 ~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~---~-------~~~~~~~~~~~~~l~~aGf~~~~~~~~~ 235 (297)
T 2o57_A 171 QECARVLKPRGVMAITDPMKEDGIDKSSIQPILDRI---K-------LHDMGSLGLYRSLAKECGLVTLRTFSRP 235 (297)
T ss_dssp HHHHHHEEEEEEEEEEEEEECTTCCGGGGHHHHHHH---T-------CSSCCCHHHHHHHHHHTTEEEEEEEECH
T ss_pred HHHHHHcCCCeEEEEEEeccCCCCchHHHHHHHHHh---c-------CCCCCCHHHHHHHHHHCCCeEEEEEECc
Confidence 99999987777655421 11 111111111 0 1124578999999999999999876554
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.7e-20 Score=158.57 Aligned_cols=140 Identities=18% Similarity=0.191 Sum_probs=109.0
Q ss_pred CCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC---CCCccEEEE
Q 020710 149 GIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL---DGKYDTVVC 225 (322)
Q Consensus 149 ~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~fD~V~~ 225 (322)
+.+|||||||+|.++..+++.+.+|+|+|+|+.|++.++++... +.|+++|+.++ +++||+|++
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~-------------~~~~~~d~~~~~~~~~~fD~v~~ 108 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASLGHQIEGLEPATRLVELARQTHPS-------------VTFHHGTITDLSDSPKRWAGLLA 108 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHTTCCEEEECCCHHHHHHHHHHCTT-------------SEEECCCGGGGGGSCCCEEEEEE
T ss_pred CCeEEEecCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHhCCC-------------CeEEeCcccccccCCCCeEEEEe
Confidence 78999999999999999999999999999999999999987421 28999998775 589999999
Q ss_pred cccccccCcchHHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCCCCCccccccCCHHHHHHHHHHCCCEEEEEe
Q 020710 226 LDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQKVGWKIRKRG 305 (322)
Q Consensus 226 ~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~vv~~~ 305 (322)
..+++|++.+....+++++.+++++||.+.+....... . ..+.. ...+.++++.+++.++++++||++++..
T Consensus 109 ~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~-----~-~~~~~--~~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 180 (203)
T 3h2b_A 109 WYSLIHMGPGELPDALVALRMAVEDGGGLLMSFFSGPS-----L-EPMYH--PVATAYRWPLPELAQALETAGFQVTSSH 180 (203)
T ss_dssp ESSSTTCCTTTHHHHHHHHHHTEEEEEEEEEEEECCSS-----C-EEECC--SSSCEEECCHHHHHHHHHHTTEEEEEEE
T ss_pred hhhHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEccCCc-----h-hhhhc--hhhhhccCCHHHHHHHHHHCCCcEEEEE
Confidence 99999998656789999999988777765542111000 1 11111 1223345789999999999999999977
Q ss_pred eeec
Q 020710 306 LITT 309 (322)
Q Consensus 306 ~~~~ 309 (322)
....
T Consensus 181 ~~~~ 184 (203)
T 3h2b_A 181 WDPR 184 (203)
T ss_dssp ECTT
T ss_pred ecCC
Confidence 6543
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=4e-20 Score=160.62 Aligned_cols=169 Identities=14% Similarity=0.181 Sum_probs=127.7
Q ss_pred HHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccc
Q 020710 135 ENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLE 214 (322)
Q Consensus 135 ~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 214 (322)
..+++.+.. .++.+|||||||+|.++..+++.+.+|+|+|+|+.|++.+++++...+..+ +.++++|++
T Consensus 11 ~~~~~~~~~---~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~--------v~~~~~d~~ 79 (239)
T 1xxl_A 11 GLMIKTAEC---RAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGVEN--------VRFQQGTAE 79 (239)
T ss_dssp HHHHHHHTC---CTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHHTCCS--------EEEEECBTT
T ss_pred chHHHHhCc---CCCCEEEEEccCcCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCC--------eEEEecccc
Confidence 445555554 368899999999999999999998899999999999999999987765432 389999987
Q ss_pred cC---CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEEC----CC-hhhHHHHHHhhccCCCCCCccccccCC
Q 020710 215 SL---DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFA----PK-TFYYDLLKRVGELFPGPSKATRAYLHA 286 (322)
Q Consensus 215 ~~---~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (322)
++ +++||+|+|..+++|+++ ...+++++++++++||.+.+. +. .....+......... ..+...++
T Consensus 80 ~~~~~~~~fD~v~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 153 (239)
T 1xxl_A 80 SLPFPDDSFDIITCRYAAHHFSD--VRKAVREVARVLKQDGRFLLVDHYAPEDPVLDEFVNHLNRLRD----PSHVRESS 153 (239)
T ss_dssp BCCSCTTCEEEEEEESCGGGCSC--HHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHHHHHC----TTCCCCCB
T ss_pred cCCCCCCcEEEEEECCchhhccC--HHHHHHHHHHHcCCCcEEEEEEcCCCCChhHHHHHHHHHHhcc----ccccCCCC
Confidence 76 578999999999999998 459999999988777765542 11 122222222221111 11233458
Q ss_pred HHHHHHHHHHCCCEEEEEeeeecceehhhhhhhc
Q 020710 287 EADVERALQKVGWKIRKRGLITTQFYFARLVEAV 320 (322)
Q Consensus 287 ~~~~~~~l~~aGf~vv~~~~~~~~~~f~~~~~~~ 320 (322)
.+++.++|+++||+++........+.|...++.+
T Consensus 154 ~~~~~~ll~~aGf~~~~~~~~~~~~~~~~w~~~~ 187 (239)
T 1xxl_A 154 LSEWQAMFSANQLAYQDIQKWNLPIQYDSWIKRG 187 (239)
T ss_dssp HHHHHHHHHHTTEEEEEEEEEEEEEEHHHHHHHH
T ss_pred HHHHHHHHHHCCCcEEEEEeecCccCHHHHHHHc
Confidence 9999999999999999988887778888776654
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.83 E-value=8.6e-20 Score=161.34 Aligned_cols=148 Identities=22% Similarity=0.250 Sum_probs=113.9
Q ss_pred CCCCeEEEECCCcccchHHHHhc-CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC---CCCccE
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQ-GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL---DGKYDT 222 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~fD~ 222 (322)
.++.+|||||||+|.++..+++. +++|+|+|+|+.+++.++++....+..+++ .++++|+.++ +++||+
T Consensus 60 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~-------~~~~~d~~~~~~~~~~fD~ 132 (273)
T 3bus_A 60 RSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLANRV-------TFSYADAMDLPFEDASFDA 132 (273)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHHHHHHHTTCTTTE-------EEEECCTTSCCSCTTCEEE
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHhcCCCcce-------EEEECccccCCCCCCCccE
Confidence 46789999999999999999985 889999999999999999999887765444 8999998876 578999
Q ss_pred EEEcccccccCcchHHHHHHHHHhccCCeEEEEECC----ChhhH---HHHHHhhccCCCCCCccccccCCHHHHHHHHH
Q 020710 223 VVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAP----KTFYY---DLLKRVGELFPGPSKATRAYLHAEADVERALQ 295 (322)
Q Consensus 223 V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~----~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 295 (322)
|++..+++|+++. ..+++++++++++||.+.+.. ..... .........+ .+..+++.+++.++++
T Consensus 133 v~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~l~ 204 (273)
T 3bus_A 133 VWALESLHHMPDR--GRALREMARVLRPGGTVAIADFVLLAPVEGAKKEAVDAFRAGG------GVLSLGGIDEYESDVR 204 (273)
T ss_dssp EEEESCTTTSSCH--HHHHHHHHTTEEEEEEEEEEEEEESSCCCHHHHHHHHHHHHHH------TCCCCCCHHHHHHHHH
T ss_pred EEEechhhhCCCH--HHHHHHHHHHcCCCeEEEEEEeeccCCCChhHHHHHHHHHhhc------CccCCCCHHHHHHHHH
Confidence 9999999999984 599999999987777554421 11111 1112111111 1234578999999999
Q ss_pred HCCCEEEEEeeeec
Q 020710 296 KVGWKIRKRGLITT 309 (322)
Q Consensus 296 ~aGf~vv~~~~~~~ 309 (322)
++||++++......
T Consensus 205 ~aGf~~~~~~~~~~ 218 (273)
T 3bus_A 205 QAELVVTSTVDISA 218 (273)
T ss_dssp HTTCEEEEEEECHH
T ss_pred HcCCeEEEEEECcH
Confidence 99999998766543
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.83 E-value=1.9e-20 Score=158.79 Aligned_cols=148 Identities=19% Similarity=0.164 Sum_probs=107.3
Q ss_pred CCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhc---cCC-CCCCCCCceEEcccccCC----C
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLA---DNG-GEAPVMPKFEVKDLESLD----G 218 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~---~~~-~~~~~~~~~~~~d~~~~~----~ 218 (322)
.++.+|||+|||+|.++..|++.|++|+|||+|+.|++.|+++....... ... .....+++|+++|+.+++ +
T Consensus 21 ~~~~~vLD~GCG~G~~~~~la~~g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~~~ 100 (203)
T 1pjz_A 21 VPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARDIG 100 (203)
T ss_dssp CTTCEEEETTTCCSHHHHHHHHHCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHHHH
T ss_pred CCCCEEEEeCCCCcHhHHHHHHCCCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCcccCC
Confidence 36789999999999999999999999999999999999999875421000 000 000012499999998872 7
Q ss_pred CccEEEEcccccccCcchHHHHHHHHHhccCCeEE--EEECCChhhHHHHHHhhccCCCCCCccccccCCHHHHHHHHHH
Q 020710 219 KYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLI--LSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQK 296 (322)
Q Consensus 219 ~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~i--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 296 (322)
+||+|++..+++|++++....+++++++++++||. +....... .. .....+.++.+++.+++.+
T Consensus 101 ~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~~~~~~~---------~~-----~~~~~~~~~~~el~~~~~~ 166 (203)
T 1pjz_A 101 HCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYDQ---------AL-----LEGPPFSVPQTWLHRVMSG 166 (203)
T ss_dssp SEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCS---------SS-----SSSCCCCCCHHHHHHTSCS
T ss_pred CEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCc---------cc-----cCCCCCCCCHHHHHHHhcC
Confidence 89999999999999876677899999999888875 22211100 00 0111233589999999998
Q ss_pred CCCEEEEEeeeec
Q 020710 297 VGWKIRKRGLITT 309 (322)
Q Consensus 297 aGf~vv~~~~~~~ 309 (322)
||+++..+....
T Consensus 167 -gf~i~~~~~~~~ 178 (203)
T 1pjz_A 167 -NWEVTKVGGQDT 178 (203)
T ss_dssp -SEEEEEEEESSC
T ss_pred -CcEEEEeccccc
Confidence 999887665543
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=3.3e-19 Score=158.84 Aligned_cols=150 Identities=13% Similarity=0.185 Sum_probs=113.4
Q ss_pred CCCCCeEEEECCCcccchHHHHhc-CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccCCCCccEEE
Q 020710 146 SLKGIAVCDAGCGTGSLAIPLAKQ-GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESLDGKYDTVV 224 (322)
Q Consensus 146 ~~~~~~VLDvGcG~G~~~~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~fD~V~ 224 (322)
..++.+|||||||+|.++..+++. +++|+|+|+|+.+++.+++++...+...++ .+..+|+.+++++||+|+
T Consensus 62 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~~~~~~~-------~~~~~d~~~~~~~fD~v~ 134 (287)
T 1kpg_A 62 LQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSK-------RVLLAGWEQFDEPVDRIV 134 (287)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCE-------EEEESCGGGCCCCCSEEE
T ss_pred CCCcCEEEEECCcccHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCCCCe-------EEEECChhhCCCCeeEEE
Confidence 346789999999999999999954 889999999999999999998876654333 899999988789999999
Q ss_pred EcccccccCcchHHHHHHHHHhccCCeEEEEECC----Chhh------------HHHHHHhhccCCCCCCccccccCCHH
Q 020710 225 CLDVLIHYPQSKADGMIAHLASLAEKRLILSFAP----KTFY------------YDLLKRVGELFPGPSKATRAYLHAEA 288 (322)
Q Consensus 225 ~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~----~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (322)
+..+++|++++....+++++.+++++||.+.+.. .... ..+...+...+. ....+++.+
T Consensus 135 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~s~~ 209 (287)
T 1kpg_A 135 SIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIF-----PGGRLPSIP 209 (287)
T ss_dssp EESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTS-----TTCCCCCHH
T ss_pred EeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEEecCCCccccccccccccccccchhhhHHheeC-----CCCCCCCHH
Confidence 9999999976557799999999887666554321 1110 011122222111 122356899
Q ss_pred HHHHHHHHCCCEEEEEeee
Q 020710 289 DVERALQKVGWKIRKRGLI 307 (322)
Q Consensus 289 ~~~~~l~~aGf~vv~~~~~ 307 (322)
++.++++++||++++....
T Consensus 210 ~~~~~l~~aGf~~~~~~~~ 228 (287)
T 1kpg_A 210 MVQECASANGFTVTRVQSL 228 (287)
T ss_dssp HHHHHHHTTTCEEEEEEEC
T ss_pred HHHHHHHhCCcEEEEEEeC
Confidence 9999999999999987654
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.83 E-value=8.1e-20 Score=158.09 Aligned_cols=143 Identities=15% Similarity=0.092 Sum_probs=112.6
Q ss_pred CCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--CCCccEEEE
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL--DGKYDTVVC 225 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~fD~V~~ 225 (322)
++.+|||||||+|.++..+++.+.+|+|+|+|+.+++.++++....+...++ .|+++|+.++ +++||+|++
T Consensus 66 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v-------~~~~~d~~~~~~~~~fD~v~~ 138 (235)
T 3lcc_A 66 PLGRALVPGCGGGHDVVAMASPERFVVGLDISESALAKANETYGSSPKAEYF-------SFVKEDVFTWRPTELFDLIFD 138 (235)
T ss_dssp CCEEEEEETCTTCHHHHHHCBTTEEEEEECSCHHHHHHHHHHHTTSGGGGGE-------EEECCCTTTCCCSSCEEEEEE
T ss_pred CCCCEEEeCCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHHHhhccCCCcce-------EEEECchhcCCCCCCeeEEEE
Confidence 3569999999999999999988999999999999999999998765443333 8999999876 568999999
Q ss_pred cccccccCcchHHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCCCCCccccccCCHHHHHHHHHHCCCEEEEEe
Q 020710 226 LDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQKVGWKIRKRG 305 (322)
Q Consensus 226 ~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~vv~~~ 305 (322)
..+++|++++....+++++.+++++||.+.+...... .......+.++.+++.++++++||++++.+
T Consensus 139 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~-------------~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 205 (235)
T 3lcc_A 139 YVFFCAIEPEMRPAWAKSMYELLKPDGELITLMYPIT-------------DHVGGPPYKVDVSTFEEVLVPIGFKAVSVE 205 (235)
T ss_dssp ESSTTTSCGGGHHHHHHHHHHHEEEEEEEEEEECCCS-------------CCCSCSSCCCCHHHHHHHHGGGTEEEEEEE
T ss_pred ChhhhcCCHHHHHHHHHHHHHHCCCCcEEEEEEeccc-------------ccCCCCCccCCHHHHHHHHHHcCCeEEEEE
Confidence 9999999966678999999998877776654211100 001112234689999999999999999877
Q ss_pred eeecc
Q 020710 306 LITTQ 310 (322)
Q Consensus 306 ~~~~~ 310 (322)
.....
T Consensus 206 ~~~~~ 210 (235)
T 3lcc_A 206 ENPHA 210 (235)
T ss_dssp ECTTC
T ss_pred ecCCc
Confidence 66543
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.83 E-value=8.6e-20 Score=157.70 Aligned_cols=165 Identities=18% Similarity=0.177 Sum_probs=118.0
Q ss_pred HHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEc
Q 020710 134 VENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVK 211 (322)
Q Consensus 134 ~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (322)
...+++.+... .++.+|||||||+|.++..+++. +.+|+|+|+|+.|++.++++....+ + +.++++
T Consensus 32 ~~~~~~~~~~~--~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---~-------~~~~~~ 99 (234)
T 3dtn_A 32 YGVSVSIASVD--TENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNL---K-------VKYIEA 99 (234)
T ss_dssp HHHHHHTCCCS--CSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCT---T-------EEEEES
T ss_pred HHHHHHHhhcC--CCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCC---C-------EEEEeC
Confidence 35555555532 46789999999999999999998 7899999999999999999876543 1 389999
Q ss_pred ccccC--CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEECC----C-hhhHH-----HHHHhhc-cC-----
Q 020710 212 DLESL--DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAP----K-TFYYD-----LLKRVGE-LF----- 273 (322)
Q Consensus 212 d~~~~--~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~----~-~~~~~-----~~~~~~~-~~----- 273 (322)
|+.++ .++||+|++..+++|++++....+++++++++++||.+.+.. . ..... +...... .+
T Consensus 100 d~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (234)
T 3dtn_A 100 DYSKYDFEEKYDMVVSALSIHHLEDEDKKELYKRSYSILKESGIFINADLVHGETAFIENLNKTIWRQYVENSGLTEEEI 179 (234)
T ss_dssp CTTTCCCCSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHHHHHHHTSSCCHHHH
T ss_pred chhccCCCCCceEEEEeCccccCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCChhhhhHHHHHHHHHHHhcCCCHHHH
Confidence 99876 479999999999999998776789999999887777665421 1 11111 1111000 00
Q ss_pred -CCCCCccccccCCHHHHHHHHHHCCCEEEEEeeeecc
Q 020710 274 -PGPSKATRAYLHAEADVERALQKVGWKIRKRGLITTQ 310 (322)
Q Consensus 274 -~~~~~~~~~~~~~~~~~~~~l~~aGf~vv~~~~~~~~ 310 (322)
.......+.+.++.+++.++|+++||+++++......
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~~~~~~~ 217 (234)
T 3dtn_A 180 AAGYERSKLDKDIEMNQQLNWLKEAGFRDVSCIYKYYQ 217 (234)
T ss_dssp HTTC----CCCCCBHHHHHHHHHHTTCEEEEEEEEETT
T ss_pred HHHHHhcccccccCHHHHHHHHHHcCCCceeeeeeecc
Confidence 0001123445668999999999999999987665443
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.83 E-value=1.8e-19 Score=156.56 Aligned_cols=159 Identities=13% Similarity=0.143 Sum_probs=117.1
Q ss_pred HHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEccc
Q 020710 134 VENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDL 213 (322)
Q Consensus 134 ~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~ 213 (322)
.+.+++.+... .++.+|||||||+|.++..+++.+.+|+|+|+|+.|++.++++... . +.|+++|+
T Consensus 30 ~~~~~~~l~~~--~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~---~---------v~~~~~d~ 95 (250)
T 2p7i_A 30 HPFMVRAFTPF--FRPGNLLELGSFKGDFTSRLQEHFNDITCVEASEEAISHAQGRLKD---G---------ITYIHSRF 95 (250)
T ss_dssp HHHHHHHHGGG--CCSSCEEEESCTTSHHHHHHTTTCSCEEEEESCHHHHHHHHHHSCS---C---------EEEEESCG
T ss_pred HHHHHHHHHhh--cCCCcEEEECCCCCHHHHHHHHhCCcEEEEeCCHHHHHHHHHhhhC---C---------eEEEEccH
Confidence 35566666643 3577999999999999999999988999999999999999988653 1 28999998
Q ss_pred ccC--CCCccEEEEcccccccCcchHHHHHHHHH-hccCCeEEEEE-CCChhh-HHHHHHhhccCCCCC-------Cccc
Q 020710 214 ESL--DGKYDTVVCLDVLIHYPQSKADGMIAHLA-SLAEKRLILSF-APKTFY-YDLLKRVGELFPGPS-------KATR 281 (322)
Q Consensus 214 ~~~--~~~fD~V~~~~~l~~~~~~~~~~~l~~l~-~~~~~~~il~~-~~~~~~-~~~~~~~~~~~~~~~-------~~~~ 281 (322)
.++ +++||+|+|..+++|++++ ..++++++ +++++||.+.+ .++... ..........+.... ...+
T Consensus 96 ~~~~~~~~fD~v~~~~~l~~~~~~--~~~l~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (250)
T 2p7i_A 96 EDAQLPRRYDNIVLTHVLEHIDDP--VALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGH 173 (250)
T ss_dssp GGCCCSSCEEEEEEESCGGGCSSH--HHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTTC
T ss_pred HHcCcCCcccEEEEhhHHHhhcCH--HHHHHHHHHHhcCCCCEEEEEcCChHHHHHHHHHHcCccccchhcccccccccc
Confidence 775 6889999999999999985 49999999 98877765544 222211 111111122222110 1223
Q ss_pred cccCCHHHHHHHHHHCCCEEEEEeeee
Q 020710 282 AYLHAEADVERALQKVGWKIRKRGLIT 308 (322)
Q Consensus 282 ~~~~~~~~~~~~l~~aGf~vv~~~~~~ 308 (322)
...++.+++.++++++||++++.....
T Consensus 174 ~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 200 (250)
T 2p7i_A 174 RCTYALDTLERDASRAGLQVTYRSGIF 200 (250)
T ss_dssp CCCCCHHHHHHHHHHTTCEEEEEEEEE
T ss_pred cccCCHHHHHHHHHHCCCeEEEEeeeE
Confidence 346799999999999999999876443
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.83 E-value=1e-19 Score=155.54 Aligned_cols=166 Identities=15% Similarity=0.236 Sum_probs=118.9
Q ss_pred HHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcC--CEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEE
Q 020710 133 TVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQG--AIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEV 210 (322)
Q Consensus 133 ~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~ 210 (322)
..+.+++.+... ++.+|||||||+|.++..+++.+ .+|+|+|+|+.|++.+++++...+.... ...++.+++
T Consensus 17 ~~~~l~~~l~~~---~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~---~~~~v~~~~ 90 (217)
T 3jwh_A 17 RMNGVVAALKQS---NARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRN---QWERLQLIQ 90 (217)
T ss_dssp HHHHHHHHHHHT---TCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHH---HHTTEEEEE
T ss_pred HHHHHHHHHHhc---CCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcc---cCcceEEEe
Confidence 345666666654 57899999999999999999985 6899999999999999999865443210 000138999
Q ss_pred cccccC---CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCCCCCccccccCCH
Q 020710 211 KDLESL---DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAE 287 (322)
Q Consensus 211 ~d~~~~---~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (322)
+|+... +++||+|+|..+++|++++....+++++.+++++||++.+.+...+......+.. .......+.+.+++
T Consensus 91 ~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 168 (217)
T 3jwh_A 91 GALTYQDKRFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTTPNIEYNVKFANLPA--GKLRHKDHRFEWTR 168 (217)
T ss_dssp CCTTSCCGGGCSCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBHHHHHHTC-------------CCSCBCH
T ss_pred CCcccccccCCCcCEEeeHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEccCcccchhhccccc--ccccccccccccCH
Confidence 998765 4789999999999999987678999999999888887776665432211100100 00112234455789
Q ss_pred HHHH----HHHHHCCCEEEEEee
Q 020710 288 ADVE----RALQKVGWKIRKRGL 306 (322)
Q Consensus 288 ~~~~----~~l~~aGf~vv~~~~ 306 (322)
+++. ++++++||+++....
T Consensus 169 ~~l~~~~~~~~~~~Gf~v~~~~~ 191 (217)
T 3jwh_A 169 SQFQNWANKITERFAYNVQFQPI 191 (217)
T ss_dssp HHHHHHHHHHHHHSSEEEEECCC
T ss_pred HHHHHHHHHHHHHcCceEEEEec
Confidence 9999 899999999977543
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.7e-20 Score=159.95 Aligned_cols=167 Identities=17% Similarity=0.161 Sum_probs=118.8
Q ss_pred HHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc-CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEc
Q 020710 133 TVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ-GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVK 211 (322)
Q Consensus 133 ~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (322)
..+.+++.+... +.+|||||||+|.++..+++. +.+|+|+|+|+.+++.+++++...+...++ .++++
T Consensus 32 ~~~~~~~~~~~~----~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~-------~~~~~ 100 (219)
T 3dlc_A 32 IAENIINRFGIT----AGTCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLNDRI-------QIVQG 100 (219)
T ss_dssp HHHHHHHHHCCC----EEEEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHHHHHTTCTTTE-------EEEEC
T ss_pred HHHHHHHhcCCC----CCEEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHhccccCce-------EEEEc
Confidence 345555555433 349999999999999999997 779999999999999999999887665433 89999
Q ss_pred ccccC---CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEECCC----hhhHHHHHHhhccCCCCCC--cccc
Q 020710 212 DLESL---DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPK----TFYYDLLKRVGELFPGPSK--ATRA 282 (322)
Q Consensus 212 d~~~~---~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~----~~~~~~~~~~~~~~~~~~~--~~~~ 282 (322)
|+.++ +++||+|++..+++|+++ ...+++++++++++||.+.+... ................... ..+.
T Consensus 101 d~~~~~~~~~~~D~v~~~~~l~~~~~--~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (219)
T 3dlc_A 101 DVHNIPIEDNYADLIVSRGSVFFWED--VATAFREIYRILKSGGKTYIGGGFGNKELRDSISAEMIRKNPDWKEFNRKNI 178 (219)
T ss_dssp BTTBCSSCTTCEEEEEEESCGGGCSC--HHHHHHHHHHHEEEEEEEEEEECCSSHHHHHHHHHHHHHHCTTHHHHHHHHS
T ss_pred CHHHCCCCcccccEEEECchHhhccC--HHHHHHHHHHhCCCCCEEEEEeccCcHHHHHHHHHHHHHhHHHHHhhhhhcc
Confidence 99875 588999999999999987 55999999998877776655321 1111111111111111000 0112
Q ss_pred ccCCHHHHHHHHHHCCCEEEEEeeeeccee
Q 020710 283 YLHAEADVERALQKVGWKIRKRGLITTQFY 312 (322)
Q Consensus 283 ~~~~~~~~~~~l~~aGf~vv~~~~~~~~~~ 312 (322)
..++.+++.++|+++||++++.......++
T Consensus 179 ~~~~~~~~~~~l~~aGf~~v~~~~~~~~~~ 208 (219)
T 3dlc_A 179 SQENVERFQNVLDEIGISSYEIILGDEGFW 208 (219)
T ss_dssp SHHHHHHHHHHHHHHTCSSEEEEEETTEEE
T ss_pred ccCCHHHHHHHHHHcCCCeEEEEecCCceE
Confidence 234789999999999999888765554443
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=4e-20 Score=157.70 Aligned_cols=160 Identities=20% Similarity=0.218 Sum_probs=113.6
Q ss_pred HHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEccc
Q 020710 134 VENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDL 213 (322)
Q Consensus 134 ~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~ 213 (322)
...+++.+... .++.+|||||||+|.++..+++.+.+|+|+|+|+.|++.+++ .+.. ++.++++|+
T Consensus 34 ~~~~~~~l~~~--~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~----~~~~--------~~~~~~~d~ 99 (218)
T 3ou2_A 34 APAALERLRAG--NIRGDVLELASGTGYWTRHLSGLADRVTALDGSAEMIAEAGR----HGLD--------NVEFRQQDL 99 (218)
T ss_dssp HHHHHHHHTTT--TSCSEEEEESCTTSHHHHHHHHHSSEEEEEESCHHHHHHHGG----GCCT--------TEEEEECCT
T ss_pred HHHHHHHHhcC--CCCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHh----cCCC--------CeEEEeccc
Confidence 45666666643 356799999999999999999999999999999999999987 2211 138999998
Q ss_pred ccC--CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEECC-Ch---hhHHHH-----HHhhccCCCCCC-ccc
Q 020710 214 ESL--DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAP-KT---FYYDLL-----KRVGELFPGPSK-ATR 281 (322)
Q Consensus 214 ~~~--~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~-~~---~~~~~~-----~~~~~~~~~~~~-~~~ 281 (322)
.++ +++||+|+|..+++|++++....+++++++++++||.+.+.. .. ...... ......+..... ...
T Consensus 100 ~~~~~~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (218)
T 3ou2_A 100 FDWTPDRQWDAVFFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDVTDHERRLEQQDDSEPEVAVRRTLQDGRSFRIV 179 (218)
T ss_dssp TSCCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCCC------------CEEEEECTTSCEEEEE
T ss_pred ccCCCCCceeEEEEechhhcCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCccccchhhhcccccceeeecCCcchhhHh
Confidence 876 789999999999999999777899999999887777554431 11 111111 011112211000 001
Q ss_pred cccCCHHHHHHHHHHCCCEEEEEeee
Q 020710 282 AYLHAEADVERALQKVGWKIRKRGLI 307 (322)
Q Consensus 282 ~~~~~~~~~~~~l~~aGf~vv~~~~~ 307 (322)
..+++.+++.++++++||++...+..
T Consensus 180 ~~~~~~~~~~~~l~~aGf~v~~~~~~ 205 (218)
T 3ou2_A 180 KVFRSPAELTERLTALGWSCSVDEVH 205 (218)
T ss_dssp CCCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred hcCCCHHHHHHHHHHCCCEEEeeecc
Confidence 23569999999999999997665543
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.82 E-value=1.2e-19 Score=155.22 Aligned_cols=165 Identities=17% Similarity=0.277 Sum_probs=118.9
Q ss_pred HHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcC--CEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEc
Q 020710 134 VENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQG--AIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVK 211 (322)
Q Consensus 134 ~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (322)
.+.+++.+... ++.+|||||||+|.++..+++.+ .+|+|+|+|+.|++.+++++...+.... ...+++++++
T Consensus 18 ~~~l~~~l~~~---~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~---~~~~v~~~~~ 91 (219)
T 3jwg_A 18 LGTVVAVLKSV---NAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEM---QRKRISLFQS 91 (219)
T ss_dssp HHHHHHHHHHT---TCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHH---HHTTEEEEEC
T ss_pred HHHHHHHHhhc---CCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccc---cCcceEEEeC
Confidence 35566666654 57899999999999999999985 6899999999999999999876544210 0001389999
Q ss_pred ccccC---CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCC-CCCCccccccCCH
Q 020710 212 DLESL---DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFP-GPSKATRAYLHAE 287 (322)
Q Consensus 212 d~~~~---~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 287 (322)
|+... +++||+|+|..+++|++++.+..+++++.+++++|+++...+...+... ...... ......+.+.+++
T Consensus 92 d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 168 (219)
T 3jwg_A 92 SLVYRDKRFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIVSTPNKEYNFH---YGNLFEGNLRHRDHRFEWTR 168 (219)
T ss_dssp CSSSCCGGGTTCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBGGGGGC---CCCT-----GGGCCTTSBCH
T ss_pred cccccccccCCCCEEEEHHHHHhCCHHHHHHHHHHHHHhhCCCEEEEEccchhhhhh---hcccCcccccccCceeeecH
Confidence 98765 4789999999999999987678999999999877777766554322110 000000 0112334455689
Q ss_pred HHHH----HHHHHCCCEEEEEeee
Q 020710 288 ADVE----RALQKVGWKIRKRGLI 307 (322)
Q Consensus 288 ~~~~----~~l~~aGf~vv~~~~~ 307 (322)
+++. ++++++||++......
T Consensus 169 ~~l~~~~~~l~~~~Gf~v~~~~~g 192 (219)
T 3jwg_A 169 KEFQTWAVKVAEKYGYSVRFLQIG 192 (219)
T ss_dssp HHHHHHHHHHHHHHTEEEEEEEES
T ss_pred HHHHHHHHHHHHHCCcEEEEEecC
Confidence 9999 8899999998776433
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=2e-19 Score=161.57 Aligned_cols=152 Identities=17% Similarity=0.200 Sum_probs=115.9
Q ss_pred CCCCCeEEEECCCcccchHHHHhc-CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccCCCCccEEE
Q 020710 146 SLKGIAVCDAGCGTGSLAIPLAKQ-GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESLDGKYDTVV 224 (322)
Q Consensus 146 ~~~~~~VLDvGcG~G~~~~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~fD~V~ 224 (322)
..++.+|||||||+|.++..+++. +++|+|+|+|+.|++.++++....++..++ .+.++|+.+++++||+|+
T Consensus 70 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v-------~~~~~d~~~~~~~fD~v~ 142 (302)
T 3hem_A 70 LEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRK-------EVRIQGWEEFDEPVDRIV 142 (302)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHSCCSSCE-------EEEECCGGGCCCCCSEEE
T ss_pred CCCcCEEEEeeccCcHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCCCce-------EEEECCHHHcCCCccEEE
Confidence 356789999999999999999998 999999999999999999999887765444 899999988899999999
Q ss_pred EcccccccCcc-------hHHHHHHHHHhccCCeEEEEEC---CChhhHHH-------------HHHhhccCCCCCCccc
Q 020710 225 CLDVLIHYPQS-------KADGMIAHLASLAEKRLILSFA---PKTFYYDL-------------LKRVGELFPGPSKATR 281 (322)
Q Consensus 225 ~~~~l~~~~~~-------~~~~~l~~l~~~~~~~~il~~~---~~~~~~~~-------------~~~~~~~~~~~~~~~~ 281 (322)
+..+++|++++ ....+++++.+++++||.+.+. ........ ...+..... ..
T Consensus 143 ~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----p~ 217 (302)
T 3hem_A 143 SLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIF-----PG 217 (302)
T ss_dssp EESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTC-----TT
T ss_pred EcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEeccCccchhhccccccccccchHHHHHHhcC-----CC
Confidence 99999999663 4579999999988766655432 11111000 011111111 12
Q ss_pred cccCCHHHHHHHHHHCCCEEEEEeeeec
Q 020710 282 AYLHAEADVERALQKVGWKIRKRGLITT 309 (322)
Q Consensus 282 ~~~~~~~~~~~~l~~aGf~vv~~~~~~~ 309 (322)
.++.+.+++.++++++||+++..+....
T Consensus 218 ~~~~s~~~~~~~l~~aGf~~~~~~~~~~ 245 (302)
T 3hem_A 218 GRLPRISQVDYYSSNAGWKVERYHRIGA 245 (302)
T ss_dssp CCCCCHHHHHHHHHHHTCEEEEEEECGG
T ss_pred CCCCCHHHHHHHHHhCCcEEEEEEeCch
Confidence 2456899999999999999998765543
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.1e-19 Score=154.48 Aligned_cols=139 Identities=19% Similarity=0.186 Sum_probs=108.2
Q ss_pred CCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--CCCccEEEE
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL--DGKYDTVVC 225 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~fD~V~~ 225 (322)
++.+|||||||+|.++..+++.+.+|+|+|+|+.|++.++++.. +.+..+|+..+ +++||+|+|
T Consensus 43 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~--------------~~~~~~d~~~~~~~~~fD~v~~ 108 (211)
T 3e23_A 43 AGAKILELGCGAGYQAEAMLAAGFDVDATDGSPELAAEASRRLG--------------RPVRTMLFHQLDAIDAYDAVWA 108 (211)
T ss_dssp TTCEEEESSCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHT--------------SCCEECCGGGCCCCSCEEEEEE
T ss_pred CCCcEEEECCCCCHHHHHHHHcCCeEEEECCCHHHHHHHHHhcC--------------CceEEeeeccCCCCCcEEEEEe
Confidence 57899999999999999999999999999999999999998861 17888888776 689999999
Q ss_pred cccccccCcchHHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCCCCCccccccCCHHHHHHHHHHCC-CEEEEE
Q 020710 226 LDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQKVG-WKIRKR 304 (322)
Q Consensus 226 ~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG-f~vv~~ 304 (322)
..+++|++++....+++++++++++||++.+....... .... .......+++.+++.++++++| |++++.
T Consensus 109 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~-------~~~~--~~~~~~~~~~~~~~~~~l~~aG~f~~~~~ 179 (211)
T 3e23_A 109 HACLLHVPRDELADVLKLIWRALKPGGLFYASYKSGEG-------EGRD--KLARYYNYPSEEWLRARYAEAGTWASVAV 179 (211)
T ss_dssp CSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCSS-------CEEC--TTSCEECCCCHHHHHHHHHHHCCCSEEEE
T ss_pred cCchhhcCHHHHHHHHHHHHHhcCCCcEEEEEEcCCCc-------cccc--ccchhccCCCHHHHHHHHHhCCCcEEEEE
Confidence 99999999666789999999988777766543111000 0000 0111223568999999999999 999987
Q ss_pred eeeec
Q 020710 305 GLITT 309 (322)
Q Consensus 305 ~~~~~ 309 (322)
.....
T Consensus 180 ~~~~~ 184 (211)
T 3e23_A 180 ESSEG 184 (211)
T ss_dssp EEEEE
T ss_pred EeccC
Confidence 65543
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.81 E-value=8.1e-20 Score=158.49 Aligned_cols=145 Identities=18% Similarity=0.230 Sum_probs=108.1
Q ss_pred CCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC---CCCccEEE
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL---DGKYDTVV 224 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~fD~V~ 224 (322)
++.+|||||||+|.++..+++.+.+|+|+|+|+.+++.++++.... ++.++++|+.++ +++||+|+
T Consensus 53 ~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~-----------~~~~~~~d~~~~~~~~~~fD~v~ 121 (242)
T 3l8d_A 53 KEAEVLDVGCGDGYGTYKLSRTGYKAVGVDISEVMIQKGKERGEGP-----------DLSFIKGDLSSLPFENEQFEAIM 121 (242)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHTTTCBT-----------TEEEEECBTTBCSSCTTCEEEEE
T ss_pred CCCeEEEEcCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhcccC-----------CceEEEcchhcCCCCCCCccEEE
Confidence 4789999999999999999999999999999999999998775211 138999998776 68999999
Q ss_pred EcccccccCcchHHHHHHHHHhccCCeEEEEECC-ChhhHHHHHHhhccCCCCCCccccccCCHHHHHHHHHHCCCEEEE
Q 020710 225 CLDVLIHYPQSKADGMIAHLASLAEKRLILSFAP-KTFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQKVGWKIRK 303 (322)
Q Consensus 225 ~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~vv~ 303 (322)
+..+++|+++. ..+++++.+++++||++.+.. ..............+. ...+...++.+++.++++++||++++
T Consensus 122 ~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~Gf~~~~ 196 (242)
T 3l8d_A 122 AINSLEWTEEP--LRALNEIKRVLKSDGYACIAILGPTAKPRENSYPRLYG---KDVVCNTMMPWEFEQLVKEQGFKVVD 196 (242)
T ss_dssp EESCTTSSSCH--HHHHHHHHHHEEEEEEEEEEEECTTCGGGGGGGGGGGT---CCCSSCCCCHHHHHHHHHHTTEEEEE
T ss_pred EcChHhhccCH--HHHHHHHHHHhCCCeEEEEEEcCCcchhhhhhhhhhcc---ccccccCCCHHHHHHHHHHcCCEEEE
Confidence 99999999884 499999999887777554421 1111000111111111 12233456899999999999999998
Q ss_pred Eeeee
Q 020710 304 RGLIT 308 (322)
Q Consensus 304 ~~~~~ 308 (322)
.....
T Consensus 197 ~~~~~ 201 (242)
T 3l8d_A 197 GIGVY 201 (242)
T ss_dssp EEEEE
T ss_pred eeccc
Confidence 76543
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.5e-19 Score=163.66 Aligned_cols=149 Identities=14% Similarity=0.188 Sum_probs=114.2
Q ss_pred CCCCCeEEEECCCcccchHHHHhc-CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccCCCCccEEE
Q 020710 146 SLKGIAVCDAGCGTGSLAIPLAKQ-GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESLDGKYDTVV 224 (322)
Q Consensus 146 ~~~~~~VLDvGcG~G~~~~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~fD~V~ 224 (322)
..++.+|||||||+|.++..+++. +++|+|+|+|+.|++.++++....+..+++ .+.++|+.+++++||+|+
T Consensus 88 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v-------~~~~~d~~~~~~~fD~v~ 160 (318)
T 2fk8_A 88 LKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSR-------QVLLQGWEDFAEPVDRIV 160 (318)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCE-------EEEESCGGGCCCCCSEEE
T ss_pred CCCcCEEEEEcccchHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCce-------EEEECChHHCCCCcCEEE
Confidence 346789999999999999999988 999999999999999999998877654433 899999988889999999
Q ss_pred EcccccccCcchHHHHHHHHHhccCCeEEEEEC---CChhhH-------------HHHHHhhcc-CCCCCCccccccCCH
Q 020710 225 CLDVLIHYPQSKADGMIAHLASLAEKRLILSFA---PKTFYY-------------DLLKRVGEL-FPGPSKATRAYLHAE 287 (322)
Q Consensus 225 ~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~---~~~~~~-------------~~~~~~~~~-~~~~~~~~~~~~~~~ 287 (322)
+..+++|++++....+++++.+++++||.+.+. ...... .+...+... ++ ...+.+.
T Consensus 161 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~s~ 234 (318)
T 2fk8_A 161 SIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFP------GGRLPST 234 (318)
T ss_dssp EESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTST------TCCCCCH
T ss_pred EeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEeccCCchhhhhccccccccccchhhHHHHhcCC------CCcCCCH
Confidence 999999997666789999999987666654432 111110 011112211 21 1235689
Q ss_pred HHHHHHHHHCCCEEEEEeee
Q 020710 288 ADVERALQKVGWKIRKRGLI 307 (322)
Q Consensus 288 ~~~~~~l~~aGf~vv~~~~~ 307 (322)
+++.++++++||++++....
T Consensus 235 ~~~~~~l~~aGf~~~~~~~~ 254 (318)
T 2fk8_A 235 EMMVEHGEKAGFTVPEPLSL 254 (318)
T ss_dssp HHHHHHHHHTTCBCCCCEEC
T ss_pred HHHHHHHHhCCCEEEEEEec
Confidence 99999999999999876544
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.81 E-value=3.1e-19 Score=154.98 Aligned_cols=149 Identities=16% Similarity=0.166 Sum_probs=111.5
Q ss_pred HHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccc
Q 020710 135 ENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLE 214 (322)
Q Consensus 135 ~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 214 (322)
..+...+... .++.+|||||||+|.++..+++.+++|+|+|+|+.|++.++++ . .++++|+.
T Consensus 30 ~~~~~~l~~~--~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~-------~---------~~~~~d~~ 91 (240)
T 3dli_A 30 ARLRRYIPYF--KGCRRVLDIGCGRGEFLELCKEEGIESIGVDINEDMIKFCEGK-------F---------NVVKSDAI 91 (240)
T ss_dssp HHHGGGGGGT--TTCSCEEEETCTTTHHHHHHHHHTCCEEEECSCHHHHHHHHTT-------S---------EEECSCHH
T ss_pred HHHHHHHhhh--cCCCeEEEEeCCCCHHHHHHHhCCCcEEEEECCHHHHHHHHhh-------c---------ceeeccHH
Confidence 3444444432 3568999999999999999999999999999999999998876 1 78888875
Q ss_pred cC-----CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEE-CCCh-hhHHHHHHhhccCCCCCCccccccCCH
Q 020710 215 SL-----DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSF-APKT-FYYDLLKRVGELFPGPSKATRAYLHAE 287 (322)
Q Consensus 215 ~~-----~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (322)
+. +++||+|+|..+++|++++.+..+++++++++++||++.+ .+.. ....+. ..+. ...+.+.++.
T Consensus 92 ~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~----~~~~---~~~~~~~~~~ 164 (240)
T 3dli_A 92 EYLKSLPDKYLDGVMISHFVEHLDPERLFELLSLCYSKMKYSSYIVIESPNPTSLYSLI----NFYI---DPTHKKPVHP 164 (240)
T ss_dssp HHHHTSCTTCBSEEEEESCGGGSCGGGHHHHHHHHHHHBCTTCCEEEEEECTTSHHHHH----HHTT---STTCCSCCCH
T ss_pred HHhhhcCCCCeeEEEECCchhhCCcHHHHHHHHHHHHHcCCCcEEEEEeCCcchhHHHH----HHhc---CccccccCCH
Confidence 52 6899999999999999987678999999998766654433 2221 111111 1221 1224456789
Q ss_pred HHHHHHHHHCCCEEEEEeeee
Q 020710 288 ADVERALQKVGWKIRKRGLIT 308 (322)
Q Consensus 288 ~~~~~~l~~aGf~vv~~~~~~ 308 (322)
+++.++++++||++++.....
T Consensus 165 ~~l~~~l~~aGf~~~~~~~~~ 185 (240)
T 3dli_A 165 ETLKFILEYLGFRDVKIEFFE 185 (240)
T ss_dssp HHHHHHHHHHTCEEEEEEEEC
T ss_pred HHHHHHHHHCCCeEEEEEEec
Confidence 999999999999998876654
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=6.5e-20 Score=164.59 Aligned_cols=165 Identities=19% Similarity=0.216 Sum_probs=114.9
Q ss_pred HHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhc--cCCCCCCCCCceEE
Q 020710 133 TVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLA--DNGGEAPVMPKFEV 210 (322)
Q Consensus 133 ~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~--~~~~~~~~~~~~~~ 210 (322)
.+..+++.+... +.+|||||||+|.++..+++.+.+|+|+|+|+.|++.+++++...+.. .+ +.|++
T Consensus 71 ~~~~~~~~~~~~----~~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~-------v~~~~ 139 (299)
T 3g2m_A 71 EAREFATRTGPV----SGPVLELAAGMGRLTFPFLDLGWEVTALELSTSVLAAFRKRLAEAPADVRDR-------CTLVQ 139 (299)
T ss_dssp HHHHHHHHHCCC----CSCEEEETCTTTTTHHHHHTTTCCEEEEESCHHHHHHHHHHHHTSCHHHHTT-------EEEEE
T ss_pred HHHHHHHhhCCC----CCcEEEEeccCCHHHHHHHHcCCeEEEEECCHHHHHHHHHHHhhcccccccc-------eEEEe
Confidence 345566666533 559999999999999999999999999999999999999998875531 22 28999
Q ss_pred cccccC--CCCccEEEEc-ccccccCcchHHHHHHHHHhccCCeEEEEECCChhhH----------HHHHHhhccCCC--
Q 020710 211 KDLESL--DGKYDTVVCL-DVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYY----------DLLKRVGELFPG-- 275 (322)
Q Consensus 211 ~d~~~~--~~~fD~V~~~-~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~~~~----------~~~~~~~~~~~~-- 275 (322)
+|+.++ +++||+|+|. .+++|++++....+++++++++++||++.+....... .+....+..+..
T Consensus 140 ~d~~~~~~~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 219 (299)
T 3g2m_A 140 GDMSAFALDKRFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFLLSLAMSEAAESEPLERKQELPGRSGRRYVLHV 219 (299)
T ss_dssp CBTTBCCCSCCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEECCHHHHSCCCCC-------------CCE
T ss_pred CchhcCCcCCCcCEEEECCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEeecCccccccchhccceeecCCCcEEEEEE
Confidence 999876 6899999976 5677776656789999999988777766542111100 010000110000
Q ss_pred -----------------------CCCccccccCCHHHHHHHHHHCCCEEEEEeeee
Q 020710 276 -----------------------PSKATRAYLHAEADVERALQKVGWKIRKRGLIT 308 (322)
Q Consensus 276 -----------------------~~~~~~~~~~~~~~~~~~l~~aGf~vv~~~~~~ 308 (322)
.....+.++++.++++++|+++||++++.....
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~~ 275 (299)
T 3g2m_A 220 RHLPAEEIQEITIHPADETTDPFVVCTHRRRLLAPDQVVRELVRSGFDVIAQTPFA 275 (299)
T ss_dssp EEEEEEEEEEEEEEESCC--CCCCEEEEEEEEECHHHHHHHHHHTTCEEEEEEEEC
T ss_pred EEeccccEEEEEEEeccCCCCcEEEEEEEEEEeCHHHHHHHHHHCCCEEEEEEecC
Confidence 001112235699999999999999999976554
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=9.3e-19 Score=154.39 Aligned_cols=157 Identities=13% Similarity=0.178 Sum_probs=118.6
Q ss_pred HHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc-CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEc
Q 020710 133 TVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ-GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVK 211 (322)
Q Consensus 133 ~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (322)
....+++.+.. ..++.+|||||||+|.++..+++. +.+|+|+|+|+.|++.+++++...++.+++ +|+++
T Consensus 33 ~~~~~l~~l~~--~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v-------~~~~~ 103 (267)
T 3kkz_A 33 VTLKALSFIDN--LTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRV-------TGIVG 103 (267)
T ss_dssp HHHHHHTTCCC--CCTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHTTCTTTE-------EEEEC
T ss_pred HHHHHHHhccc--CCCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCcCc-------EEEEc
Confidence 34555555552 346789999999999999999998 459999999999999999999887765544 89999
Q ss_pred ccccC---CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEECC-----ChhhHHHHHHhhccCCCCCCccccc
Q 020710 212 DLESL---DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAP-----KTFYYDLLKRVGELFPGPSKATRAY 283 (322)
Q Consensus 212 d~~~~---~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (322)
|+.++ +++||+|+|..+++|+ + ...+++++.+++++||++.+.. ..............++ .
T Consensus 104 d~~~~~~~~~~fD~i~~~~~~~~~-~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~--------~ 172 (267)
T 3kkz_A 104 SMDDLPFRNEELDLIWSEGAIYNI-G--FERGLNEWRKYLKKGGYLAVSECSWFTDERPAEINDFWMDAYP--------E 172 (267)
T ss_dssp CTTSCCCCTTCEEEEEESSCGGGT-C--HHHHHHHHGGGEEEEEEEEEEEEEESSSCCCHHHHHHHHHHCT--------T
T ss_pred ChhhCCCCCCCEEEEEEcCCceec-C--HHHHHHHHHHHcCCCCEEEEEEeeecCCCChHHHHHHHHHhCC--------C
Confidence 99876 5789999999999999 5 5589999999988777665432 1111111122112221 2
Q ss_pred cCCHHHHHHHHHHCCCEEEEEeeeec
Q 020710 284 LHAEADVERALQKVGWKIRKRGLITT 309 (322)
Q Consensus 284 ~~~~~~~~~~l~~aGf~vv~~~~~~~ 309 (322)
+.+.+++.++++++||+++.......
T Consensus 173 ~~~~~~~~~~l~~aGf~~v~~~~~~~ 198 (267)
T 3kkz_A 173 IDTIPNQVAKIHKAGYLPVATFILPE 198 (267)
T ss_dssp CEEHHHHHHHHHHTTEEEEEEEECCG
T ss_pred CCCHHHHHHHHHHCCCEEEEEEECCH
Confidence 45789999999999999998766553
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=9.7e-19 Score=153.11 Aligned_cols=146 Identities=15% Similarity=0.105 Sum_probs=105.3
Q ss_pred CCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHh----------hhccCCCCCCCCCceEEcccccC-
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEE----------LLADNGGEAPVMPKFEVKDLESL- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~----------~~~~~~~~~~~~~~~~~~d~~~~- 216 (322)
++.+|||+|||+|..+..|++.|++|+|||+|+.|++.|+++.... +... ......+++|+++|+.++
T Consensus 68 ~~~~vLD~GCG~G~~~~~La~~G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~D~~~l~ 146 (252)
T 2gb4_A 68 SGLRVFFPLCGKAIEMKWFADRGHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKV-FKSSSGSISLYCCSIFDLP 146 (252)
T ss_dssp CSCEEEETTCTTCTHHHHHHHTTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEE-EEETTSSEEEEESCTTTGG
T ss_pred CCCeEEEeCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHhcccccccccccccccccc-cccCCCceEEEECccccCC
Confidence 5789999999999999999999999999999999999998765310 0000 000001248999999886
Q ss_pred --C-CCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCCCCCccccccCCHHHHHHH
Q 020710 217 --D-GKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADVERA 293 (322)
Q Consensus 217 --~-~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (322)
+ ++||+|++..+++|++++....+++++.+++++||++.+..-.... .... ...+.++++++.++
T Consensus 147 ~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~~~~~~~-------~~~~-----g~~~~~~~~el~~~ 214 (252)
T 2gb4_A 147 RANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVAVLSYDP-------TKHA-----GPPFYVPSAELKRL 214 (252)
T ss_dssp GGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCT-------TSCC-----CSSCCCCHHHHHHH
T ss_pred cccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEEEEecCC-------ccCC-----CCCCCCCHHHHHHH
Confidence 2 8999999999999999877788999999998777765321100000 0011 12233689999999
Q ss_pred HHHCCCEEEEEeee
Q 020710 294 LQKVGWKIRKRGLI 307 (322)
Q Consensus 294 l~~aGf~vv~~~~~ 307 (322)
+.+ +|+++..+..
T Consensus 215 l~~-~f~v~~~~~~ 227 (252)
T 2gb4_A 215 FGT-KCSMQCLEEV 227 (252)
T ss_dssp HTT-TEEEEEEEEE
T ss_pred hhC-CeEEEEEecc
Confidence 987 5999886643
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.2e-18 Score=148.85 Aligned_cols=154 Identities=17% Similarity=0.150 Sum_probs=117.5
Q ss_pred HHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcC---CEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEc
Q 020710 135 ENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQG---AIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVK 211 (322)
Q Consensus 135 ~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~---~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (322)
+.+++.+.. .++.+|||+|||+|.++..+++.+ .+|+|+|+|+.|++.+++++...+..+ +.+.++
T Consensus 27 ~~~~~~~~~---~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~--------~~~~~~ 95 (219)
T 3dh0_A 27 EKVLKEFGL---KEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKN--------VEVLKS 95 (219)
T ss_dssp HHHHHHHTC---CTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTT--------EEEEEC
T ss_pred HHHHHHhCC---CCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCc--------EEEEec
Confidence 556666643 367899999999999999999885 799999999999999999988766532 389999
Q ss_pred ccccC---CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCCCCCccccccCCHH
Q 020710 212 DLESL---DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEA 288 (322)
Q Consensus 212 d~~~~---~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (322)
|+.++ +++||+|++..+++|+++ ...+++++.+++++||.+.+...... ...........++.+
T Consensus 96 d~~~~~~~~~~fD~v~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~i~~~~~~-----------~~~~~~~~~~~~~~~ 162 (219)
T 3dh0_A 96 EENKIPLPDNTVDFIFMAFTFHELSE--PLKFLEELKRVAKPFAYLAIIDWKKE-----------ERDKGPPPEEVYSEW 162 (219)
T ss_dssp BTTBCSSCSSCEEEEEEESCGGGCSS--HHHHHHHHHHHEEEEEEEEEEEECSS-----------CCSSSCCGGGSCCHH
T ss_pred ccccCCCCCCCeeEEEeehhhhhcCC--HHHHHHHHHHHhCCCeEEEEEEeccc-----------ccccCCchhcccCHH
Confidence 98775 578999999999999988 45999999998877776654311100 001112223356899
Q ss_pred HHHHHHHHCCCEEEEEeeeeccee
Q 020710 289 DVERALQKVGWKIRKRGLITTQFY 312 (322)
Q Consensus 289 ~~~~~l~~aGf~vv~~~~~~~~~~ 312 (322)
++.++++++||++++........+
T Consensus 163 ~~~~~l~~~Gf~~~~~~~~~~~~~ 186 (219)
T 3dh0_A 163 EVGLILEDAGIRVGRVVEVGKYCF 186 (219)
T ss_dssp HHHHHHHHTTCEEEEEEEETTTEE
T ss_pred HHHHHHHHCCCEEEEEEeeCCceE
Confidence 999999999999998766554433
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.80 E-value=1.9e-19 Score=156.46 Aligned_cols=143 Identities=15% Similarity=0.126 Sum_probs=109.6
Q ss_pred CCCeEEEECCCcccchHHHHhc-CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC---CCCccEE
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQ-GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL---DGKYDTV 223 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~fD~V 223 (322)
++.+|||||||+|.++..+++. +.+|+|+|+|+.|++.+++++...+.. + +.++++|+.++ +++||+|
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~-------~~~~~~d~~~~~~~~~~fD~v 150 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKR-V-------RNYFCCGLQDFTPEPDSYDVI 150 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGG-E-------EEEEECCGGGCCCCSSCEEEE
T ss_pred CCCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHhhhcCCc-e-------EEEEEcChhhcCCCCCCEEEE
Confidence 5789999999999999999888 458999999999999999998765321 1 27899998766 4689999
Q ss_pred EEcccccccCcchHHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCCCCCccccccCCHHHHHHHHHHCCCEEEE
Q 020710 224 VCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQKVGWKIRK 303 (322)
Q Consensus 224 ~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~vv~ 303 (322)
++..+++|++++....+++++.+++++||++.+....... ...+.. ....+..+.+++.++++++||++++
T Consensus 151 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~------~~~~~~---~~~~~~~~~~~~~~~l~~aGf~~~~ 221 (241)
T 2ex4_A 151 WIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQE------GVILDD---VDSSVCRDLDVVRRIICSAGLSLLA 221 (241)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSS------SEEEET---TTTEEEEBHHHHHHHHHHTTCCEEE
T ss_pred EEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEccCCC------cceecc---cCCcccCCHHHHHHHHHHcCCeEEE
Confidence 9999999999877789999999988777766553221110 111111 1122334899999999999999998
Q ss_pred Eeee
Q 020710 304 RGLI 307 (322)
Q Consensus 304 ~~~~ 307 (322)
....
T Consensus 222 ~~~~ 225 (241)
T 2ex4_A 222 EERQ 225 (241)
T ss_dssp EEEC
T ss_pred eeec
Confidence 7554
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=1.2e-18 Score=152.96 Aligned_cols=145 Identities=14% Similarity=0.197 Sum_probs=111.0
Q ss_pred CCCCCeEEEECCCcccchHHHHhc-CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC---CCCcc
Q 020710 146 SLKGIAVCDAGCGTGSLAIPLAKQ-GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL---DGKYD 221 (322)
Q Consensus 146 ~~~~~~VLDvGcG~G~~~~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~fD 221 (322)
..++.+|||||||+|.++..+++. +++|+|+|+|+.|++.++++.... . +++++++|+.++ +++||
T Consensus 53 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~-------~~~~~~~d~~~~~~~~~~fD 122 (266)
T 3ujc_A 53 LNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGN---N-------KIIFEANDILTKEFPENNFD 122 (266)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHTCCSC---T-------TEEEEECCTTTCCCCTTCEE
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhhcC---C-------CeEEEECccccCCCCCCcEE
Confidence 346789999999999999999998 899999999999999999887543 1 138999998775 68999
Q ss_pred EEEEcccccccCcchHHHHHHHHHhccCCeEEEEECC----C--hhhHHHHHHhhccCCCCCCccccccCCHHHHHHHHH
Q 020710 222 TVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAP----K--TFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQ 295 (322)
Q Consensus 222 ~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~----~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 295 (322)
+|++..+++|++++....+++++.+++++||.+.+.. . .+...+...+.. .+..+++.+++.++++
T Consensus 123 ~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~l~ 194 (266)
T 3ujc_A 123 LIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCATEKENWDDEFKEYVKQ--------RKYTLITVEEYADILT 194 (266)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEESCGGGCCHHHHHHHHH--------HTCCCCCHHHHHHHHH
T ss_pred EEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEeccCCcccchHHHHHHHhc--------CCCCCCCHHHHHHHHH
Confidence 9999999999965557799999999887777655431 1 122222111111 1122468999999999
Q ss_pred HCCCEEEEEeeee
Q 020710 296 KVGWKIRKRGLIT 308 (322)
Q Consensus 296 ~aGf~vv~~~~~~ 308 (322)
++||++++.....
T Consensus 195 ~~Gf~~~~~~~~~ 207 (266)
T 3ujc_A 195 ACNFKNVVSKDLS 207 (266)
T ss_dssp HTTCEEEEEEECH
T ss_pred HcCCeEEEEEeCC
Confidence 9999999876554
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.80 E-value=2.7e-19 Score=156.57 Aligned_cols=159 Identities=17% Similarity=0.211 Sum_probs=118.1
Q ss_pred HHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc-CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEc
Q 020710 133 TVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ-GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVK 211 (322)
Q Consensus 133 ~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (322)
.++.+++.+.. .++.+|||||||+|.++..+++. +.+|+|+|+|+.|++.+++++...++..++ .|+++
T Consensus 24 ~~~~l~~~~~~---~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v-------~~~~~ 93 (256)
T 1nkv_A 24 KYATLGRVLRM---KPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERV-------HFIHN 93 (256)
T ss_dssp HHHHHHHHTCC---CTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTE-------EEEES
T ss_pred HHHHHHHhcCC---CCCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcce-------EEEEC
Confidence 44556555543 46789999999999999999987 889999999999999999999877665333 89999
Q ss_pred ccccC--CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEECCChhhHH-HHHHhhccCCCCCCccccccCCHH
Q 020710 212 DLESL--DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYD-LLKRVGELFPGPSKATRAYLHAEA 288 (322)
Q Consensus 212 d~~~~--~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 288 (322)
|+.++ +++||+|+|..+++|+++.. .+++++++++++||.+.+....+... ....+...+. ...+..+++.+
T Consensus 94 d~~~~~~~~~fD~V~~~~~~~~~~~~~--~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 168 (256)
T 1nkv_A 94 DAAGYVANEKCDVAACVGATWIAGGFA--GAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQACG---VSSTSDFLTLP 168 (256)
T ss_dssp CCTTCCCSSCEEEEEEESCGGGTSSSH--HHHHHHTTSEEEEEEEEEEEEEETTCCSSHHHHHTTT---CSCGGGSCCHH
T ss_pred ChHhCCcCCCCCEEEECCChHhcCCHH--HHHHHHHHHcCCCeEEEEecCcccCCCChHHHHHHHh---cccccccCCHH
Confidence 99876 58899999999999999854 99999999988777665532111000 0011111221 11233467899
Q ss_pred HHHHHHHHCCCEEEEEee
Q 020710 289 DVERALQKVGWKIRKRGL 306 (322)
Q Consensus 289 ~~~~~l~~aGf~vv~~~~ 306 (322)
++.++++++||++++...
T Consensus 169 ~~~~~l~~aGf~~~~~~~ 186 (256)
T 1nkv_A 169 GLVGAFDDLGYDVVEMVL 186 (256)
T ss_dssp HHHHHHHTTTBCCCEEEE
T ss_pred HHHHHHHHCCCeeEEEEe
Confidence 999999999999887544
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=1.5e-18 Score=151.82 Aligned_cols=158 Identities=12% Similarity=0.183 Sum_probs=118.4
Q ss_pred hHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcC-CEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEE
Q 020710 132 KTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQG-AIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEV 210 (322)
Q Consensus 132 ~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~ 210 (322)
.....+++.+... .++.+|||||||+|.++..+++.+ .+|+|+|+|+.+++.+++++...+..+++ .+++
T Consensus 32 ~~~~~~l~~l~~~--~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~-------~~~~ 102 (257)
T 3f4k_A 32 EATRKAVSFINEL--TDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRV-------KGIT 102 (257)
T ss_dssp HHHHHHHTTSCCC--CTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHTTCTTTE-------EEEE
T ss_pred HHHHHHHHHHhcC--CCCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCCCCce-------EEEE
Confidence 3445555555432 467799999999999999999984 49999999999999999999888776544 8999
Q ss_pred cccccC---CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEECC-----ChhhHHHHHHhhccCCCCCCcccc
Q 020710 211 KDLESL---DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAP-----KTFYYDLLKRVGELFPGPSKATRA 282 (322)
Q Consensus 211 ~d~~~~---~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 282 (322)
+|+.++ +++||+|+|..+++|+ + ...+++++.+++++||++.+.. ..............++
T Consensus 103 ~d~~~~~~~~~~fD~v~~~~~l~~~-~--~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~-------- 171 (257)
T 3f4k_A 103 GSMDNLPFQNEELDLIWSEGAIYNI-G--FERGMNEWSKYLKKGGFIAVSEASWFTSERPAEIEDFWMDAYP-------- 171 (257)
T ss_dssp CCTTSCSSCTTCEEEEEEESCSCCC-C--HHHHHHHHHTTEEEEEEEEEEEEEESSSCCCHHHHHHHHHHCT--------
T ss_pred CChhhCCCCCCCEEEEEecChHhhc-C--HHHHHHHHHHHcCCCcEEEEEEeeccCCCChHHHHHHHHHhCC--------
Confidence 999776 5899999999999999 5 5589999999887777665432 1111112222222221
Q ss_pred ccCCHHHHHHHHHHCCCEEEEEeeeec
Q 020710 283 YLHAEADVERALQKVGWKIRKRGLITT 309 (322)
Q Consensus 283 ~~~~~~~~~~~l~~aGf~vv~~~~~~~ 309 (322)
.+.+.+++.++++++||+++.......
T Consensus 172 ~~~~~~~~~~~l~~aGf~~v~~~~~~~ 198 (257)
T 3f4k_A 172 EISVIPTCIDKMERAGYTPTAHFILPE 198 (257)
T ss_dssp TCCBHHHHHHHHHHTTEEEEEEEECCG
T ss_pred CCCCHHHHHHHHHHCCCeEEEEEECCh
Confidence 145789999999999999998665543
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.79 E-value=2.4e-18 Score=149.25 Aligned_cols=114 Identities=20% Similarity=0.260 Sum_probs=93.0
Q ss_pred HHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcc
Q 020710 133 TVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKD 212 (322)
Q Consensus 133 ~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d 212 (322)
..+.+.+++... ..++.+|||||||+|.++..+++.+.+|+|+|+|+.|++.++++....+.. +.+.++|
T Consensus 23 ~~~~~~~~l~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~---------~~~~~~d 92 (246)
T 1y8c_A 23 WSDFIIEKCVEN-NLVFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGLK---------PRLACQD 92 (246)
T ss_dssp HHHHHHHHHHTT-TCCTTEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHHHHHHHTTCC---------CEEECCC
T ss_pred HHHHHHHHHHHh-CCCCCeEEEeCCCCCHHHHHHHHCCCcEEEEECCHHHHHHHHHHHhhcCCC---------eEEEecc
Confidence 345566666543 235789999999999999999999999999999999999999998765542 2899999
Q ss_pred cccC--CCCccEEEEcc-cccccCc-chHHHHHHHHHhccCCeEEEEE
Q 020710 213 LESL--DGKYDTVVCLD-VLIHYPQ-SKADGMIAHLASLAEKRLILSF 256 (322)
Q Consensus 213 ~~~~--~~~fD~V~~~~-~l~~~~~-~~~~~~l~~l~~~~~~~~il~~ 256 (322)
+.++ .++||+|++.. +++|+++ +....++++++++++++|++.+
T Consensus 93 ~~~~~~~~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~ 140 (246)
T 1y8c_A 93 ISNLNINRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIF 140 (246)
T ss_dssp GGGCCCSCCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred cccCCccCCceEEEEcCccccccCCHHHHHHHHHHHHHhcCCCcEEEE
Confidence 8775 47899999998 9999954 4467999999998877776655
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.8e-18 Score=153.52 Aligned_cols=162 Identities=24% Similarity=0.361 Sum_probs=117.0
Q ss_pred HHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccc
Q 020710 135 ENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLE 214 (322)
Q Consensus 135 ~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 214 (322)
+.+++.+.. .++.+|||||||+|.++..+++.+.+|+|+|+|+.|++.++++.. + +.|.++|+.
T Consensus 47 ~~l~~~l~~---~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~------~-------~~~~~~d~~ 110 (279)
T 3ccf_A 47 EDLLQLLNP---QPGEFILDLGCGTGQLTEKIAQSGAEVLGTDNAATMIEKARQNYP------H-------LHFDVADAR 110 (279)
T ss_dssp CHHHHHHCC---CTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHCT------T-------SCEEECCTT
T ss_pred HHHHHHhCC---CCCCEEEEecCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHhhCC------C-------CEEEECChh
Confidence 455555543 357899999999999999999999999999999999999988751 1 289999988
Q ss_pred cC--CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEEC-C--Ch--hhHHHH-HHhhcc-CCCCCCccccccC
Q 020710 215 SL--DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFA-P--KT--FYYDLL-KRVGEL-FPGPSKATRAYLH 285 (322)
Q Consensus 215 ~~--~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~-~--~~--~~~~~~-~~~~~~-~~~~~~~~~~~~~ 285 (322)
++ +++||+|++..+++|+++ ...+++++++++++||.+.+. + .. .....+ ..+... +.......+.+++
T Consensus 111 ~~~~~~~fD~v~~~~~l~~~~d--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (279)
T 3ccf_A 111 NFRVDKPLDAVFSNAMLHWVKE--PEAAIASIHQALKSGGRFVAEFGGKGNIKYILEALYNALETLGIHNPQALNPWYFP 188 (279)
T ss_dssp TCCCSSCEEEEEEESCGGGCSC--HHHHHHHHHHHEEEEEEEEEEEECTTTTHHHHHHHHHHHHHHTCCCGGGGCCCCCC
T ss_pred hCCcCCCcCEEEEcchhhhCcC--HHHHHHHHHHhcCCCcEEEEEecCCcchHHHHHHHHHHHHhcCCccccCcCceeCC
Confidence 76 678999999999999998 459999999988777655442 1 11 111111 111111 0000111122456
Q ss_pred CHHHHHHHHHHCCCEEEEEeeeecceehh
Q 020710 286 AEADVERALQKVGWKIRKRGLITTQFYFA 314 (322)
Q Consensus 286 ~~~~~~~~l~~aGf~vv~~~~~~~~~~f~ 314 (322)
+.+++.++|+++||+++..+.......+.
T Consensus 189 ~~~~~~~~l~~aGf~~~~~~~~~~~~~~~ 217 (279)
T 3ccf_A 189 SIGEYVNILEKQGFDVTYAALFNRPTTLA 217 (279)
T ss_dssp CHHHHHHHHHHHTEEEEEEEEEECCEECS
T ss_pred CHHHHHHHHHHcCCEEEEEEEeccccccc
Confidence 89999999999999999887776666654
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.78 E-value=1e-18 Score=152.82 Aligned_cols=147 Identities=20% Similarity=0.224 Sum_probs=108.1
Q ss_pred CCCCeEEEECCCcccchHHHHhcCC-EEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC---CCCccE
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQGA-IVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL---DGKYDT 222 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~fD~ 222 (322)
.++.+|||||||+|.++..+++.+. +|+|+|+|+.|++.++++.... ++.+.++|+.++ +++||+
T Consensus 43 ~~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~-----------~~~~~~~d~~~~~~~~~~fD~ 111 (253)
T 3g5l_A 43 FNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTTSP-----------VVCYEQKAIEDIAIEPDAYNV 111 (253)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHCCCT-----------TEEEEECCGGGCCCCTTCEEE
T ss_pred cCCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHhhccC-----------CeEEEEcchhhCCCCCCCeEE
Confidence 3678999999999999999999987 8999999999999999887511 128999998775 589999
Q ss_pred EEEcccccccCcchHHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCCC------------------------CC
Q 020710 223 VVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGP------------------------SK 278 (322)
Q Consensus 223 V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~------------------------~~ 278 (322)
|+|..+++|+++ ...+++++++++++||.+.+...... ........|... ..
T Consensus 112 v~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (253)
T 3g5l_A 112 VLSSLALHYIAS--FDDICKKVYINLKSSGSFIFSVEHPV--FTADGRQDWYTDETGNKLHWPVDRYFNESMRTSHFLGE 187 (253)
T ss_dssp EEEESCGGGCSC--HHHHHHHHHHHEEEEEEEEEEEECHH--HHSSSSCSCEECSSCCEEEEEECCTTCCCEEEEEETTE
T ss_pred EEEchhhhhhhh--HHHHHHHHHHHcCCCcEEEEEeCCCc--cccCccccceeccCCceEEEEeccccccceEEEeeccc
Confidence 999999999988 55999999998877776655311110 000000000000 00
Q ss_pred ccccccCCHHHHHHHHHHCCCEEEEEeeee
Q 020710 279 ATRAYLHAEADVERALQKVGWKIRKRGLIT 308 (322)
Q Consensus 279 ~~~~~~~~~~~~~~~l~~aGf~vv~~~~~~ 308 (322)
....|.++.+++.++|+++||++++.....
T Consensus 188 ~~~~~~~t~~~~~~~l~~aGF~~~~~~e~~ 217 (253)
T 3g5l_A 188 DVQKYHRTVTTYIQTLLKNGFQINSVIEPE 217 (253)
T ss_dssp EEEEECCCHHHHHHHHHHTTEEEEEEECCC
T ss_pred cCccEecCHHHHHHHHHHcCCeeeeeecCC
Confidence 122233489999999999999999866443
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.78 E-value=5.9e-20 Score=161.70 Aligned_cols=156 Identities=21% Similarity=0.229 Sum_probs=110.7
Q ss_pred HHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcc
Q 020710 133 TVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKD 212 (322)
Q Consensus 133 ~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d 212 (322)
..+.+++.+.. .++.+|||||||+|.++..+++.+.+|+|+|+|+.|++.++++. + +.|+++|
T Consensus 22 ~~~~l~~~~~~---~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~-------~-------~~~~~~d 84 (261)
T 3ege_A 22 IVNAIINLLNL---PKGSVIADIGAGTGGYSVALANQGLFVYAVEPSIVMRQQAVVHP-------Q-------VEWFTGY 84 (261)
T ss_dssp HHHHHHHHHCC---CTTCEEEEETCTTSHHHHHHHTTTCEEEEECSCHHHHHSSCCCT-------T-------EEEECCC
T ss_pred HHHHHHHHhCC---CCCCEEEEEcCcccHHHHHHHhCCCEEEEEeCCHHHHHHHHhcc-------C-------CEEEECc
Confidence 44666666653 36789999999999999999999999999999999998876554 1 2899999
Q ss_pred cccC---CCCccEEEEcccccccCcchHHHHHHHHHhccCCeE-EEEECCC--hhhHHHHHHhhccCCCCCCccccccCC
Q 020710 213 LESL---DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRL-ILSFAPK--TFYYDLLKRVGELFPGPSKATRAYLHA 286 (322)
Q Consensus 213 ~~~~---~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~-il~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (322)
++++ +++||+|+|..+++|+++ ...++++++++++ || ++.+... .....+.. ..++......+..+.+
T Consensus 85 ~~~~~~~~~~fD~v~~~~~l~~~~~--~~~~l~~~~~~Lk-gG~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 158 (261)
T 3ege_A 85 AENLALPDKSVDGVISILAIHHFSH--LEKSFQEMQRIIR-DGTIVLLTFDIRLAQRIWLY---DYFPFLWEDALRFLPL 158 (261)
T ss_dssp TTSCCSCTTCBSEEEEESCGGGCSS--HHHHHHHHHHHBC-SSCEEEEEECGGGCCCCGGG---GTCHHHHHHHHTSCCH
T ss_pred hhhCCCCCCCEeEEEEcchHhhccC--HHHHHHHHHHHhC-CcEEEEEEcCCchhHHHHHH---HHHHHHhhhhhhhCCC
Confidence 9875 589999999999999988 5599999999877 55 3333221 11100000 1111001111233456
Q ss_pred HHHHHHHHHHCCCEEEEEeeeeccee
Q 020710 287 EADVERALQKVGWKIRKRGLITTQFY 312 (322)
Q Consensus 287 ~~~~~~~l~~aGf~vv~~~~~~~~~~ 312 (322)
.+++. +|+++||+++..........
T Consensus 159 ~~~~~-~l~~aGF~~v~~~~~~~p~~ 183 (261)
T 3ege_A 159 DEQIN-LLQENTKRRVEAIPFLLPHD 183 (261)
T ss_dssp HHHHH-HHHHHHCSEEEEEECCEETT
T ss_pred HHHHH-HHHHcCCCceeEEEecCCCc
Confidence 78899 99999999888766544433
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.77 E-value=2.1e-18 Score=151.28 Aligned_cols=149 Identities=20% Similarity=0.182 Sum_probs=108.0
Q ss_pred CCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC---CCCccEE
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL---DGKYDTV 223 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~fD~V 223 (322)
.++.+|||||||+|.++..+++.+.+|+|+|+|+.|++.+++++ .... .++.+.++|+.++ +++||+|
T Consensus 38 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~-~~~~--------~~~~~~~~d~~~~~~~~~~fD~v 108 (263)
T 2yqz_A 38 GEEPVFLELGVGTGRIALPLIARGYRYIALDADAAMLEVFRQKI-AGVD--------RKVQVVQADARAIPLPDESVHGV 108 (263)
T ss_dssp SSCCEEEEETCTTSTTHHHHHTTTCEEEEEESCHHHHHHHHHHT-TTSC--------TTEEEEESCTTSCCSCTTCEEEE
T ss_pred CCCCEEEEeCCcCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHh-hccC--------CceEEEEcccccCCCCCCCeeEE
Confidence 46789999999999999999999999999999999999999887 2211 1238999998775 5789999
Q ss_pred EEcccccccCcchHHHHHHHHHhccCCeEEEEEC--CC--hh---hHHHHHHhhccCCCCCCccccccCCHHHHHHHHHH
Q 020710 224 VCLDVLIHYPQSKADGMIAHLASLAEKRLILSFA--PK--TF---YYDLLKRVGELFPGPSKATRAYLHAEADVERALQK 296 (322)
Q Consensus 224 ~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~--~~--~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 296 (322)
++..+++|+++ ...+++++.+++++||.+.+. .. .. +...+..+...+... ...+..+++.+++.+++++
T Consensus 109 ~~~~~l~~~~~--~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~ 185 (263)
T 2yqz_A 109 IVVHLWHLVPD--WPKVLAEAIRVLKPGGALLEGWDQAEASPEWTLQERWRAFAAEEGFP-VERGLHAKRLKEVEEALRR 185 (263)
T ss_dssp EEESCGGGCTT--HHHHHHHHHHHEEEEEEEEEEEEEECCCHHHHHHHHHHHHHHHHTCC-CCCCHHHHHHHHHHHHHHH
T ss_pred EECCchhhcCC--HHHHHHHHHHHCCCCcEEEEEecCCCccHHHHHHHHHHHHHHHhCCC-cccccccCCHHHHHHHHHH
Confidence 99999999998 559999999988777655442 11 11 112222222211111 1112234578999999999
Q ss_pred CCCEEEEEeee
Q 020710 297 VGWKIRKRGLI 307 (322)
Q Consensus 297 aGf~vv~~~~~ 307 (322)
+||+++.....
T Consensus 186 ~Gf~~~~~~~~ 196 (263)
T 2yqz_A 186 LGLKPRTREVA 196 (263)
T ss_dssp TTCCCEEEEEE
T ss_pred cCCCcceEEEe
Confidence 99997765443
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.2e-18 Score=149.17 Aligned_cols=183 Identities=17% Similarity=0.207 Sum_probs=120.0
Q ss_pred hHHHHHHhchhhHHHHHHHhcCCCcccchhhhhhcCchhHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCCEE
Q 020710 94 KEVVREYFNNSGFQRWKKIYGETDDVNRVQLDIRLGHSKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIV 173 (322)
Q Consensus 94 ~~~v~~~f~~~~~~~w~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~v 173 (322)
++.+.++|+..+ +.|...+.... ... ........+++.+... ++.+|||||||+|.++..+++.+.+|
T Consensus 10 ~~~~~~~~~~~~-~~~~~~~~~~~-~~~-------~~~~~~~~~~~~~~~~---~~~~vLdiG~G~G~~~~~l~~~~~~v 77 (227)
T 3e8s_A 10 EDALLDSWHQNA-QAWIDAVRHGA-IES-------RRQVTDQAILLAILGR---QPERVLDLGCGEGWLLRALADRGIEA 77 (227)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHTC-CHH-------HHHTHHHHHHHHHHHT---CCSEEEEETCTTCHHHHHHHTTTCEE
T ss_pred HHHHHHHHHhhH-HHHHHHhcccc-ccc-------ccccccHHHHHHhhcC---CCCEEEEeCCCCCHHHHHHHHCCCEE
Confidence 456778888652 34444332111 000 0011224566666654 46899999999999999999999999
Q ss_pred EEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-------CCCccEEEEcccccccCcchHHHHHHHHHh
Q 020710 174 SASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------DGKYDTVVCLDVLIHYPQSKADGMIAHLAS 246 (322)
Q Consensus 174 ~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~ 246 (322)
+|+|+|+.|++.++++ .. +.+...|+.++ +++||+|+|..+++ .++. ..+++++++
T Consensus 78 ~~vD~s~~~~~~a~~~-----~~---------~~~~~~~~~~~~~~~~~~~~~fD~v~~~~~l~-~~~~--~~~l~~~~~ 140 (227)
T 3e8s_A 78 VGVDGDRTLVDAARAA-----GA---------GEVHLASYAQLAEAKVPVGKDYDLICANFALL-HQDI--IELLSAMRT 140 (227)
T ss_dssp EEEESCHHHHHHHHHT-----CS---------SCEEECCHHHHHTTCSCCCCCEEEEEEESCCC-SSCC--HHHHHHHHH
T ss_pred EEEcCCHHHHHHHHHh-----cc---------cccchhhHHhhcccccccCCCccEEEECchhh-hhhH--HHHHHHHHH
Confidence 9999999999999877 11 17777776543 35599999999998 6664 499999999
Q ss_pred ccCCeEEEEEC-CChhhHHHHHHhh-----ccCCCCC---CccccccCCHHHHHHHHHHCCCEEEEEee
Q 020710 247 LAEKRLILSFA-PKTFYYDLLKRVG-----ELFPGPS---KATRAYLHAEADVERALQKVGWKIRKRGL 306 (322)
Q Consensus 247 ~~~~~~il~~~-~~~~~~~~~~~~~-----~~~~~~~---~~~~~~~~~~~~~~~~l~~aGf~vv~~~~ 306 (322)
++++||++.+. +...... ..... ..+.... .....++++.+++.++|+++||++++...
T Consensus 141 ~L~pgG~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~ 208 (227)
T 3e8s_A 141 LLVPGGALVIQTLHPWSVA-DGDYQDGWREESFAGFAGDWQPMPWYFRTLASWLNALDMAGLRLVSLQE 208 (227)
T ss_dssp TEEEEEEEEEEECCTTTTC-TTCCSCEEEEECCTTSSSCCCCEEEEECCHHHHHHHHHHTTEEEEEEEC
T ss_pred HhCCCeEEEEEecCccccC-ccccccccchhhhhccccCcccceEEEecHHHHHHHHHHcCCeEEEEec
Confidence 88777766542 2111100 00000 0011111 12333466999999999999999998655
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.77 E-value=5.7e-19 Score=154.24 Aligned_cols=143 Identities=15% Similarity=0.178 Sum_probs=108.9
Q ss_pred CCCCeEEEECCCcccchHHHHhc-CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC---CCCccE
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQ-GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL---DGKYDT 222 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~fD~ 222 (322)
.++.+|||||||+|.++..+++. ..+|+++|+|+.|++.++++.... .. +.++++|+.++ +++||+
T Consensus 92 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~-~~---------~~~~~~d~~~~~~~~~~fD~ 161 (254)
T 1xtp_A 92 HGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGM-PV---------GKFILASMETATLPPNTYDL 161 (254)
T ss_dssp CCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTS-SE---------EEEEESCGGGCCCCSSCEEE
T ss_pred cCCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHHHHHHHHhccC-Cc---------eEEEEccHHHCCCCCCCeEE
Confidence 46789999999999999999888 457999999999999999887643 11 28899998765 578999
Q ss_pred EEEcccccccCcchHHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCCCCCccccccCCHHHHHHHHHHCCCEEE
Q 020710 223 VVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQKVGWKIR 302 (322)
Q Consensus 223 V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~vv 302 (322)
|+|..+++|++++....+++++++++++||++.+...... . ...+.. ...+.+.++.+++.++++++||+++
T Consensus 162 v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~-----~-~~~~~~--~~~~~~~~~~~~~~~~l~~aGf~~~ 233 (254)
T 1xtp_A 162 IVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCST-----G-DRFLVD--KEDSSLTRSDIHYKRLFNESGVRVV 233 (254)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--------CCEEEE--TTTTEEEBCHHHHHHHHHHHTCCEE
T ss_pred EEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEecCCC-----c-ccceec--ccCCcccCCHHHHHHHHHHCCCEEE
Confidence 9999999999876678999999999877776655322110 0 001000 1112335689999999999999999
Q ss_pred EEeee
Q 020710 303 KRGLI 307 (322)
Q Consensus 303 ~~~~~ 307 (322)
+....
T Consensus 234 ~~~~~ 238 (254)
T 1xtp_A 234 KEAFQ 238 (254)
T ss_dssp EEEEC
T ss_pred Eeeec
Confidence 87654
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=3.5e-18 Score=152.62 Aligned_cols=153 Identities=16% Similarity=0.158 Sum_probs=109.7
Q ss_pred CCCCeEEEECCCcccchHHHHhcCC-EEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC----CCCcc
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQGA-IVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL----DGKYD 221 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~~fD 221 (322)
.++.+|||||||+|.++..+++.+. +|+|+|+|+.|++.++++....+...++ .++++|+.+. +++||
T Consensus 63 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v-------~~~~~d~~~~~~~~~~~fD 135 (298)
T 1ri5_A 63 KRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKV-------FFRAQDSYGRHMDLGKEFD 135 (298)
T ss_dssp CTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEE-------EEEESCTTTSCCCCSSCEE
T ss_pred CCCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCccE-------EEEECCccccccCCCCCcC
Confidence 3578999999999999999988865 8999999999999999998876543222 8999998764 57899
Q ss_pred EEEEcccccc--cCcchHHHHHHHHHhccCCeEEEEECCChhhHHHHHHhh-----c-----------cCCC--------
Q 020710 222 TVVCLDVLIH--YPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVG-----E-----------LFPG-------- 275 (322)
Q Consensus 222 ~V~~~~~l~~--~~~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~-----~-----------~~~~-------- 275 (322)
+|+|..++|| ...+....+++++.+++++||.+.+...... .....+. . .++.
T Consensus 136 ~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 214 (298)
T 1ri5_A 136 VISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRD-VILERYKQGRMSNDFYKIELEKMEDVPMESVREYRF 214 (298)
T ss_dssp EEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECHH-HHHHHHHHTCCBCSSEEEECCCCSSCCTTTCCEEEE
T ss_pred EEEECchhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECCHH-HHHHHHccCccCCeeEEEEeCccccccccccceEEE
Confidence 9999999988 3334467999999998877776554322211 1111100 0 0000
Q ss_pred ----CCCccccccCCHHHHHHHHHHCCCEEEEEeee
Q 020710 276 ----PSKATRAYLHAEADVERALQKVGWKIRKRGLI 307 (322)
Q Consensus 276 ----~~~~~~~~~~~~~~~~~~l~~aGf~vv~~~~~ 307 (322)
.....+.++++.++++++++++||++++....
T Consensus 215 ~l~~~~~~~~~~~~~~~~l~~ll~~aGf~~v~~~~~ 250 (298)
T 1ri5_A 215 TLLDSVNNCIEYFVDFTRMVDGFKRLGLSLVERKGF 250 (298)
T ss_dssp EETTSCSSEEEECCCHHHHHHHHHTTTEEEEEEEEH
T ss_pred EEchhhcCCcccccCHHHHHHHHHHcCCEEEEecCH
Confidence 00112234678999999999999999987543
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=2.9e-18 Score=154.82 Aligned_cols=145 Identities=14% Similarity=0.143 Sum_probs=112.8
Q ss_pred CCCCeEEEECCCcccchHHHHhc-CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC---CCCccE
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQ-GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL---DGKYDT 222 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~fD~ 222 (322)
.++.+|||||||+|.++..+++. +++|+|+|+|+.|++.|++++...++..++ +|+++|+.++ +++||+
T Consensus 116 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v-------~~~~~d~~~~~~~~~~fD~ 188 (312)
T 3vc1_A 116 GPDDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRARELRIDDHV-------RSRVCNMLDTPFDKGAVTA 188 (312)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTE-------EEEECCTTSCCCCTTCEEE
T ss_pred CCCCEEEEecCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCce-------EEEECChhcCCCCCCCEeE
Confidence 46789999999999999999998 999999999999999999999887765444 8999999876 589999
Q ss_pred EEEcccccccCcchHHHHHHHHHhccCCeEEEEECC---Ch---hhHHHHHHhhccCCCCCCccccccCCHHHHHHHHHH
Q 020710 223 VVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAP---KT---FYYDLLKRVGELFPGPSKATRAYLHAEADVERALQK 296 (322)
Q Consensus 223 V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 296 (322)
|++..+++|+ + ...+++++.+++++||.+.+.. .. ........+...+. ..+++.+++.+++++
T Consensus 189 V~~~~~l~~~-~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~s~~~~~~~l~~ 258 (312)
T 3vc1_A 189 SWNNESTMYV-D--LHDLFSEHSRFLKVGGRYVTITGCWNPRYGQPSKWVSQINAHFE-------CNIHSRREYLRAMAD 258 (312)
T ss_dssp EEEESCGGGS-C--HHHHHHHHHHHEEEEEEEEEEEEEECTTTCSCCHHHHHHHHHHT-------CCCCBHHHHHHHHHT
T ss_pred EEECCchhhC-C--HHHHHHHHHHHcCCCcEEEEEEccccccccchhHHHHHHHhhhc-------CCCCCHHHHHHHHHH
Confidence 9999999999 4 6699999999887777554421 11 11112222221110 125688999999999
Q ss_pred CCCEEEEEeeee
Q 020710 297 VGWKIRKRGLIT 308 (322)
Q Consensus 297 aGf~vv~~~~~~ 308 (322)
+||++++.+...
T Consensus 259 aGf~~~~~~~~~ 270 (312)
T 3vc1_A 259 NRLVPHTIVDLT 270 (312)
T ss_dssp TTEEEEEEEECH
T ss_pred CCCEEEEEEeCC
Confidence 999999876654
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.77 E-value=1.7e-18 Score=154.32 Aligned_cols=149 Identities=21% Similarity=0.319 Sum_probs=107.8
Q ss_pred CCCCeEEEECCCcccchHHHHhc---CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--CCCcc
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQ---GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL--DGKYD 221 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~fD 221 (322)
.++.+|||||||+|.++..+++. +.+|+|+|+|+.|++.++++....+.. +.|+++|+.++ +++||
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~---------v~~~~~d~~~~~~~~~fD 91 (284)
T 3gu3_A 21 TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYD---------SEFLEGDATEIELNDKYD 91 (284)
T ss_dssp CSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSE---------EEEEESCTTTCCCSSCEE
T ss_pred CCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCCc---------eEEEEcchhhcCcCCCee
Confidence 46789999999999999999987 589999999999999999998765542 38999999876 57899
Q ss_pred EEEEcccccccCcchHHHHHHHHHhccCCeEEEEE-CCChhhHHH---------------HHHhhccCCCCCCccccccC
Q 020710 222 TVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSF-APKTFYYDL---------------LKRVGELFPGPSKATRAYLH 285 (322)
Q Consensus 222 ~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~-~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~ 285 (322)
+|++..+++|+++. ..+++++++++++||++.+ .+. +.... .......+..........+.
T Consensus 92 ~v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (284)
T 3gu3_A 92 IAICHAFLLHMTTP--ETMLQKMIHSVKKGGKIICFEPH-WISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRNGKDGN 168 (284)
T ss_dssp EEEEESCGGGCSSH--HHHHHHHHHTEEEEEEEEEEECC-HHHHHHSEEETTSCHHHHCCHHHHHHHHHHHHHHTCCCTT
T ss_pred EEEECChhhcCCCH--HHHHHHHHHHcCCCCEEEEEecc-hhcccccceecCcchhhccchHHHHHHHHHHhhhhccccc
Confidence 99999999999984 5999999998877776654 333 10000 00111111000001111233
Q ss_pred CHHHHHHHHHHCCCEEEEEeee
Q 020710 286 AEADVERALQKVGWKIRKRGLI 307 (322)
Q Consensus 286 ~~~~~~~~l~~aGf~vv~~~~~ 307 (322)
..+++.++|+++||+.++....
T Consensus 169 ~~~~l~~~l~~aGF~~v~~~~~ 190 (284)
T 3gu3_A 169 IGMKIPIYLSELGVKNIECRVS 190 (284)
T ss_dssp GGGTHHHHHHHTTCEEEEEEEC
T ss_pred HHHHHHHHHHHcCCCeEEEEEc
Confidence 5568999999999999877433
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.6e-17 Score=148.22 Aligned_cols=142 Identities=23% Similarity=0.317 Sum_probs=103.6
Q ss_pred HHhchhhHHHHHHHhcCCCcccchhhhhhcCchhHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCCEEEEEeC
Q 020710 99 EYFNNSGFQRWKKIYGETDDVNRVQLDIRLGHSKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDI 178 (322)
Q Consensus 99 ~~f~~~~~~~w~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~ 178 (322)
.||+....+.|...+..... ......+.+.+.+... ++.+|||||||+|.++..+++.+.+|+|+|+
T Consensus 21 ~y~~~~~~~~~~~~~~~~~~----------~~~~~~~~l~~~l~~~---~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~ 87 (293)
T 3thr_A 21 QYADGEAARVWQLYIGDTRS----------RTAEYKAWLLGLLRQH---GCHRVLDVACGTGVDSIMLVEEGFSVTSVDA 87 (293)
T ss_dssp TTTTCHHHHHHHHHHTCCSC----------BCHHHHHHHHHHHHHT---TCCEEEETTCTTSHHHHHHHHTTCEEEEEES
T ss_pred hhcCchHHHHHHHHHhcCcc----------hHHHHHHHHHHHhccc---CCCEEEEecCCCCHHHHHHHHCCCeEEEEEC
Confidence 46666655566666643321 1222335555666554 5789999999999999999999999999999
Q ss_pred CHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC------CCCccEEEEc-ccccccCc-----chHHHHHHHHHh
Q 020710 179 SAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL------DGKYDTVVCL-DVLIHYPQ-----SKADGMIAHLAS 246 (322)
Q Consensus 179 s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~------~~~fD~V~~~-~~l~~~~~-----~~~~~~l~~l~~ 246 (322)
|+.|++.++++........ ...++.+..+|+..+ +++||+|+|. .+++|+++ +....+++++++
T Consensus 88 s~~~l~~a~~~~~~~~~~~----~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~ 163 (293)
T 3thr_A 88 SDKMLKYALKERWNRRKEP----AFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIAS 163 (293)
T ss_dssp CHHHHHHHHHHHHHTTTSH----HHHTCEEEECCGGGHHHHSCCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhhhhccccc----ccceeeEeecChhhCccccccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHH
Confidence 9999999998864432210 001237788887653 5899999999 89999998 556799999999
Q ss_pred ccCCeEEEEEC
Q 020710 247 LAEKRLILSFA 257 (322)
Q Consensus 247 ~~~~~~il~~~ 257 (322)
++++||++.+.
T Consensus 164 ~LkpgG~l~~~ 174 (293)
T 3thr_A 164 MVRPGGLLVID 174 (293)
T ss_dssp TEEEEEEEEEE
T ss_pred HcCCCeEEEEE
Confidence 98887766654
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.76 E-value=5.1e-18 Score=150.22 Aligned_cols=148 Identities=20% Similarity=0.259 Sum_probs=110.2
Q ss_pred CCCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC---CCCcc
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL---DGKYD 221 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~fD 221 (322)
.++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.+++++...+..+ +.|.++|+.++ +++||
T Consensus 36 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~--------~~~~~~d~~~~~~~~~~fD 107 (276)
T 3mgg_A 36 PPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKN--------VKFLQANIFSLPFEDSSFD 107 (276)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCS--------EEEEECCGGGCCSCTTCEE
T ss_pred CCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCC--------cEEEEcccccCCCCCCCee
Confidence 46789999999999999999988 6799999999999999999988766532 38999998775 68999
Q ss_pred EEEEcccccccCcchHHHHHHHHHhccCCeEEEEECC----------C-hhhHHHHHHhhccCCCCCCccccccCCHHHH
Q 020710 222 TVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAP----------K-TFYYDLLKRVGELFPGPSKATRAYLHAEADV 290 (322)
Q Consensus 222 ~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~----------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (322)
+|++..+++|++++. .+++++++++++||++.+.. . .....+......... ......++.+++
T Consensus 108 ~v~~~~~l~~~~~~~--~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l 181 (276)
T 3mgg_A 108 HIFVCFVLEHLQSPE--EALKSLKKVLKPGGTITVIEGDHGSCYFHPEGKKAIEAWNCLIRVQA----YMKGNSLVGRQI 181 (276)
T ss_dssp EEEEESCGGGCSCHH--HHHHHHHHHEEEEEEEEEEEECGGGCEEESCCHHHHHHHHHHHHHHH----HTTCCTTGGGGH
T ss_pred EEEEechhhhcCCHH--HHHHHHHHHcCCCcEEEEEEcCCCCceECCCcHHHHHHHHHHHHHHH----hcCCCcchHHHH
Confidence 999999999999854 99999999887777665421 1 111111111111100 001112355789
Q ss_pred HHHHHHCCCEEEEEeeee
Q 020710 291 ERALQKVGWKIRKRGLIT 308 (322)
Q Consensus 291 ~~~l~~aGf~vv~~~~~~ 308 (322)
.++|+++||+++..+...
T Consensus 182 ~~~l~~aGf~~v~~~~~~ 199 (276)
T 3mgg_A 182 YPLLQESGFEKIRVEPRM 199 (276)
T ss_dssp HHHHHHTTCEEEEEEEEE
T ss_pred HHHHHHCCCCeEEEeeEE
Confidence 999999999999877553
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.76 E-value=7.6e-18 Score=148.41 Aligned_cols=151 Identities=19% Similarity=0.093 Sum_probs=104.8
Q ss_pred CCCCCeEEEECCCcccchHHHHhcCC-EEEEEeCCHHHHHHHHHHhHHhhhccC----------CCCC-----------C
Q 020710 146 SLKGIAVCDAGCGTGSLAIPLAKQGA-IVSASDISAAMVAEARKKAEEELLADN----------GGEA-----------P 203 (322)
Q Consensus 146 ~~~~~~VLDvGcG~G~~~~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~----------~~~~-----------~ 203 (322)
..++.+|||||||+|.++..++..++ +|+|+|+|+.|++.|++++........ +.-. .
T Consensus 53 ~~~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~ 132 (263)
T 2a14_A 53 GLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLR 132 (263)
T ss_dssp SCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred CCCCceEEEeCCCccHHHHHHHHhhhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHH
Confidence 34678999999999999888877776 599999999999999987654210000 0000 0
Q ss_pred CCCc-eEEcccccC-------CCCccEEEEcccccccC-c-chHHHHHHHHHhccCCeEEEEECC---ChhhHHHHHHhh
Q 020710 204 VMPK-FEVKDLESL-------DGKYDTVVCLDVLIHYP-Q-SKADGMIAHLASLAEKRLILSFAP---KTFYYDLLKRVG 270 (322)
Q Consensus 204 ~~~~-~~~~d~~~~-------~~~fD~V~~~~~l~~~~-~-~~~~~~l~~l~~~~~~~~il~~~~---~~~~~~~~~~~~ 270 (322)
..+. ++++|+.+. .++||+|+++.++||+. + +....+++++++++++||.+.+.. ..++.
T Consensus 133 ~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~~~~~~~------- 205 (263)
T 2a14_A 133 AAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYM------- 205 (263)
T ss_dssp HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEE-------
T ss_pred hhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEeecCccce-------
Confidence 0012 788888762 46899999999999963 2 346789999999998888776531 11110
Q ss_pred ccCCCCCCccccccCCHHHHHHHHHHCCCEEEEEeee
Q 020710 271 ELFPGPSKATRAYLHAEADVERALQKVGWKIRKRGLI 307 (322)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~vv~~~~~ 307 (322)
.+ ......+.++.+++.++|+++||++++....
T Consensus 206 ---~g-~~~~~~~~~~~~~l~~~l~~aGF~i~~~~~~ 238 (263)
T 2a14_A 206 ---VG-KREFSCVALEKGEVEQAVLDAGFDIEQLLHS 238 (263)
T ss_dssp ---ET-TEEEECCCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred ---eC-CeEeeccccCHHHHHHHHHHCCCEEEEEeec
Confidence 00 0111233568999999999999999887654
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.1e-18 Score=156.13 Aligned_cols=149 Identities=17% Similarity=0.225 Sum_probs=101.4
Q ss_pred CCCCeEEEECCCcccchHHH----Hhc--CCE--EEEEeCCHHHHHHHHHHhHHh-hhccCCCCCCCCCceEEccccc--
Q 020710 147 LKGIAVCDAGCGTGSLAIPL----AKQ--GAI--VSASDISAAMVAEARKKAEEE-LLADNGGEAPVMPKFEVKDLES-- 215 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~l----a~~--~~~--v~gvD~s~~~l~~a~~~~~~~-~~~~~~~~~~~~~~~~~~d~~~-- 215 (322)
.++.+|||||||+|.++..+ +.. +.+ ++|+|+|+.|++.|++++... +..+ ....+..+++++
T Consensus 51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~------v~~~~~~~~~~~~~ 124 (292)
T 2aot_A 51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLEN------VKFAWHKETSSEYQ 124 (292)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTT------EEEEEECSCHHHHH
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCc------ceEEEEecchhhhh
Confidence 35679999999999766543 332 444 499999999999999987653 2211 011445555543
Q ss_pred -------CCCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEEC---CChhhHHHHHHhhccCCCCCCccccccC
Q 020710 216 -------LDGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFA---PKTFYYDLLKRVGELFPGPSKATRAYLH 285 (322)
Q Consensus 216 -------~~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (322)
.+++||+|+|..++||+++ ...+++++++++++||.+.+. +...+..+.......+.. ..+..++
T Consensus 125 ~~~~~~~~~~~fD~V~~~~~l~~~~d--~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 199 (292)
T 2aot_A 125 SRMLEKKELQKWDFIHMIQMLYYVKD--IPATLKFFHSLLGTNAKMLIIVVSGSSGWDKLWKKYGSRFPQ---DDLCQYI 199 (292)
T ss_dssp HHHHTTTCCCCEEEEEEESCGGGCSC--HHHHHHHHHHTEEEEEEEEEEEECTTSHHHHHHHHHGGGSCC---CTTCCCC
T ss_pred hhhccccCCCceeEEEEeeeeeecCC--HHHHHHHHHHHcCCCcEEEEEEecCCccHHHHHHHHHHhccC---CCcccCC
Confidence 2578999999999999999 459999999998877765542 222222333333333321 1233456
Q ss_pred CHHHHHHHHHHCCCEEEEEee
Q 020710 286 AEADVERALQKVGWKIRKRGL 306 (322)
Q Consensus 286 ~~~~~~~~l~~aGf~vv~~~~ 306 (322)
+.+++.++|+++||+++....
T Consensus 200 ~~~~~~~~l~~aGf~~~~~~~ 220 (292)
T 2aot_A 200 TSDDLTQMLDNLGLKYECYDL 220 (292)
T ss_dssp CHHHHHHHHHHHTCCEEEEEE
T ss_pred CHHHHHHHHHHCCCceEEEEe
Confidence 899999999999999887433
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.6e-18 Score=152.44 Aligned_cols=109 Identities=20% Similarity=0.331 Sum_probs=90.1
Q ss_pred HHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccc
Q 020710 135 ENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLE 214 (322)
Q Consensus 135 ~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 214 (322)
..+.+.+... ..++.+|||||||+|.++..+++.+.+|+|+|+|+.|++.++++.. + +.|+++|+.
T Consensus 38 ~~~~~~l~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~------~-------~~~~~~d~~ 103 (263)
T 3pfg_A 38 ADLAALVRRH-SPKAASLLDVACGTGMHLRHLADSFGTVEGLELSADMLAIARRRNP------D-------AVLHHGDMR 103 (263)
T ss_dssp HHHHHHHHHH-CTTCCEEEEETCTTSHHHHHHTTTSSEEEEEESCHHHHHHHHHHCT------T-------SEEEECCTT
T ss_pred HHHHHHHHhh-CCCCCcEEEeCCcCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhCC------C-------CEEEECChH
Confidence 4455555443 1346899999999999999999999999999999999999998764 1 289999998
Q ss_pred cC--CCCccEEEEcc-cccccCc-chHHHHHHHHHhccCCeEEEEEC
Q 020710 215 SL--DGKYDTVVCLD-VLIHYPQ-SKADGMIAHLASLAEKRLILSFA 257 (322)
Q Consensus 215 ~~--~~~fD~V~~~~-~l~~~~~-~~~~~~l~~l~~~~~~~~il~~~ 257 (322)
++ +++||+|+|.. +++|+++ +....+++++++++++||++.+.
T Consensus 104 ~~~~~~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~i~ 150 (263)
T 3pfg_A 104 DFSLGRRFSAVTCMFSSIGHLAGQAELDAALERFAAHVLPDGVVVVE 150 (263)
T ss_dssp TCCCSCCEEEEEECTTGGGGSCHHHHHHHHHHHHHHTEEEEEEEEEC
T ss_pred HCCccCCcCEEEEcCchhhhcCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 76 68999999998 9999975 34678999999998888877764
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.76 E-value=3.7e-18 Score=150.94 Aligned_cols=161 Identities=17% Similarity=0.193 Sum_probs=110.0
Q ss_pred HHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc-C--CEEEEEeCCHH------HHHHHHHHhHHhhhccCCCCCCCC
Q 020710 135 ENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ-G--AIVSASDISAA------MVAEARKKAEEELLADNGGEAPVM 205 (322)
Q Consensus 135 ~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~-~--~~v~gvD~s~~------~l~~a~~~~~~~~~~~~~~~~~~~ 205 (322)
..+++.+. ..++.+|||||||+|.++..+++. | .+|+|+|+|+. |++.+++++...+...++
T Consensus 33 ~~l~~~~~---~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v------ 103 (275)
T 3bkx_A 33 LAIAEAWQ---VKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRL------ 103 (275)
T ss_dssp HHHHHHHT---CCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGE------
T ss_pred HHHHHHcC---CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCce------
Confidence 44444443 346889999999999999999988 4 79999999997 999999998876654333
Q ss_pred CceEEcc-c--ccC---CCCccEEEEcccccccCcchHHHHHHHHHhccCCeE-EEEEC--CC----hhhHHHH----HH
Q 020710 206 PKFEVKD-L--ESL---DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRL-ILSFA--PK----TFYYDLL----KR 268 (322)
Q Consensus 206 ~~~~~~d-~--~~~---~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~-il~~~--~~----~~~~~~~----~~ 268 (322)
+++.+| + ..+ +++||+|++..+++|++++. .+++.+++++++|+ ++... .. ....... ..
T Consensus 104 -~~~~~d~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~--~~~~~~~~l~~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (275)
T 3bkx_A 104 -TVHFNTNLSDDLGPIADQHFDRVVLAHSLWYFASAN--ALALLFKNMAAVCDHVDVAEWSMQPTALDQIGHLQAAMIQG 180 (275)
T ss_dssp -EEECSCCTTTCCGGGTTCCCSEEEEESCGGGSSCHH--HHHHHHHHHTTTCSEEEEEEECSSCSSGGGHHHHHHHHHHH
T ss_pred -EEEECChhhhccCCCCCCCEEEEEEccchhhCCCHH--HHHHHHHHHhCCCCEEEEEEecCCCCchhhhhHHHHHHHHH
Confidence 888888 3 332 58899999999999999854 67777777776444 33321 11 1111111 11
Q ss_pred hhccCCCCCCccccccCCHHHHHHHHHHCCCEEEEEeee
Q 020710 269 VGELFPGPSKATRAYLHAEADVERALQKVGWKIRKRGLI 307 (322)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~vv~~~~~ 307 (322)
....+..........+++.+++.++++++||++++....
T Consensus 181 ~~~~~~~~~~~~~~~~~s~~~l~~~l~~aGf~~~~~~~~ 219 (275)
T 3bkx_A 181 LLYAIAPSDVANIRTLITPDTLAQIAHDNTWTYTAGTIV 219 (275)
T ss_dssp HHHHHSCCTTCSCCCCCCHHHHHHHHHHHTCEEEECCCB
T ss_pred HHhhccccccccccccCCHHHHHHHHHHCCCeeEEEEEe
Confidence 111111111122224679999999999999999986654
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.76 E-value=3.3e-18 Score=148.27 Aligned_cols=153 Identities=20% Similarity=0.258 Sum_probs=110.3
Q ss_pred HHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCC-EEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccc
Q 020710 136 NTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGA-IVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLE 214 (322)
Q Consensus 136 ~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 214 (322)
.+.+.+.. .++.+|||||||+|.++..+++.+. +|+|+|+|+.|++.++++.... + +.+.++|+.
T Consensus 34 ~l~~~~~~---~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~----~-------~~~~~~d~~ 99 (243)
T 3bkw_A 34 ALRAMLPE---VGGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPDT----G-------ITYERADLD 99 (243)
T ss_dssp HHHHHSCC---CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCSS----S-------EEEEECCGG
T ss_pred HHHHhccc---cCCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHHHHHHHHHhcccC----C-------ceEEEcChh
Confidence 44555543 2578999999999999999999988 9999999999999998876432 1 288999987
Q ss_pred cC---CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEEC-CChhhHHHHHHhhccC------------CCC--
Q 020710 215 SL---DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFA-PKTFYYDLLKRVGELF------------PGP-- 276 (322)
Q Consensus 215 ~~---~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~-~~~~~~~~~~~~~~~~------------~~~-- 276 (322)
++ +++||+|++..+++|+++ ...+++++++++++||.+.+. ++... .......| ...
T Consensus 100 ~~~~~~~~fD~v~~~~~l~~~~~--~~~~l~~~~~~L~pgG~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (243)
T 3bkw_A 100 KLHLPQDSFDLAYSSLALHYVED--VARLFRTVHQALSPGGHFVFSTEHPIY---MAPARPGWAIDAEGRRTWPIDRYLV 174 (243)
T ss_dssp GCCCCTTCEEEEEEESCGGGCSC--HHHHHHHHHHHEEEEEEEEEEEECHHH---HCCSSCSCEECTTSCEEEEECCTTC
T ss_pred hccCCCCCceEEEEeccccccch--HHHHHHHHHHhcCcCcEEEEEeCCccc---ccCcCcceeecCCCceEEeeccccc
Confidence 65 578999999999999987 559999999988777765543 22110 00000000 000
Q ss_pred ---------CCccccccCCHHHHHHHHHHCCCEEEEEeee
Q 020710 277 ---------SKATRAYLHAEADVERALQKVGWKIRKRGLI 307 (322)
Q Consensus 277 ---------~~~~~~~~~~~~~~~~~l~~aGf~vv~~~~~ 307 (322)
....+.+.++.+++.++|+++||++++....
T Consensus 175 ~~~~~~~~~~~~~~~~~~t~~~~~~~l~~aGF~~~~~~~~ 214 (243)
T 3bkw_A 175 EGPRKTDWLAKGVVKHHRTVGTTLNALIRSGFAIEHVEEF 214 (243)
T ss_dssp CEEECTTHHHHSCCEEECCHHHHHHHHHHTTCEEEEEEEC
T ss_pred ccceeeeeccCceEEEeccHHHHHHHHHHcCCEeeeeccC
Confidence 0011233458999999999999999986644
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=2.1e-17 Score=138.64 Aligned_cols=149 Identities=23% Similarity=0.282 Sum_probs=112.9
Q ss_pred HHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccc
Q 020710 135 ENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLE 214 (322)
Q Consensus 135 ~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 214 (322)
..+++.+... ++.+|||+|||+|.++..+++.+.+|+|+|+|+.+++.++++....+..+ +.+.++|+.
T Consensus 22 ~~l~~~~~~~---~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~--------~~~~~~d~~ 90 (199)
T 2xvm_A 22 SEVLEAVKVV---KPGKTLDLGCGNGRNSLYLAANGYDVDAWDKNAMSIANVERIKSIENLDN--------LHTRVVDLN 90 (199)
T ss_dssp HHHHHHTTTS---CSCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCTT--------EEEEECCGG
T ss_pred HHHHHHhhcc---CCCeEEEEcCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHhCCCCC--------cEEEEcchh
Confidence 3455555543 56799999999999999999999999999999999999999987765422 389999987
Q ss_pred cC--CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEE-CCChhhHHHHHHhhccCCCCCCccccccCCHHHHH
Q 020710 215 SL--DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSF-APKTFYYDLLKRVGELFPGPSKATRAYLHAEADVE 291 (322)
Q Consensus 215 ~~--~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (322)
++ +++||+|++..+++|++++....+++++.++++++|.+.+ ..... ..+.. .....+.++.+++.
T Consensus 91 ~~~~~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~---------~~~~~--~~~~~~~~~~~~l~ 159 (199)
T 2xvm_A 91 NLTFDRQYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDT---------ADYPC--TVGFPFAFKEGELR 159 (199)
T ss_dssp GCCCCCCEEEEEEESCGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCC---------SSSCC--CSCCSCCBCTTHHH
T ss_pred hCCCCCCceEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEeecc---------CCcCC--CCCCCCccCHHHHH
Confidence 75 6899999999999999866678999999998877775433 21110 00111 11223456889999
Q ss_pred HHHHHCCCEEEEEeee
Q 020710 292 RALQKVGWKIRKRGLI 307 (322)
Q Consensus 292 ~~l~~aGf~vv~~~~~ 307 (322)
+++.+ |++++....
T Consensus 160 ~~~~~--f~~~~~~~~ 173 (199)
T 2xvm_A 160 RYYEG--WERVKYNED 173 (199)
T ss_dssp HHTTT--SEEEEEECC
T ss_pred HHhcC--CeEEEeccc
Confidence 99976 999986554
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.2e-17 Score=143.73 Aligned_cols=158 Identities=19% Similarity=0.228 Sum_probs=112.6
Q ss_pred CCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC---CCCccEEE
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL---DGKYDTVV 224 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~fD~V~ 224 (322)
++.+|||+|||+|.++..+++.+.+|+|+|+|+.+++.++++....+.... ...++.+.++|+..+ +++||+|+
T Consensus 30 ~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~---~~~~~~~~~~d~~~~~~~~~~~D~v~ 106 (235)
T 3sm3_A 30 EDDEILDIGCGSGKISLELASKGYSVTGIDINSEAIRLAETAARSPGLNQK---TGGKAEFKVENASSLSFHDSSFDFAV 106 (235)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTCCSCCSS---SSCEEEEEECCTTSCCSCTTCEEEEE
T ss_pred CCCeEEEECCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHhcCCccc---cCcceEEEEecccccCCCCCceeEEE
Confidence 478999999999999999999999999999999999999998876554210 011238899998775 67899999
Q ss_pred EcccccccCcch-HHHHHHHHHhccCCeEEEEEC---CChhhHHHH----HHhhcc------CC----CCCCccccccCC
Q 020710 225 CLDVLIHYPQSK-ADGMIAHLASLAEKRLILSFA---PKTFYYDLL----KRVGEL------FP----GPSKATRAYLHA 286 (322)
Q Consensus 225 ~~~~l~~~~~~~-~~~~l~~l~~~~~~~~il~~~---~~~~~~~~~----~~~~~~------~~----~~~~~~~~~~~~ 286 (322)
+..+++|++++. ...+++++.+++++||.+.+. .......+. ...... .. ......+.++++
T Consensus 107 ~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (235)
T 3sm3_A 107 MQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQNWHLKLYRKRYLHDFPITKEEGSFLARDPETGETEFIAHHFT 186 (235)
T ss_dssp EESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCTTSHHHHHHHHHHHHHHCSTTEEEEECTTTCCEEEEEECBC
T ss_pred EcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECCcchhHHHHHHHhhhhccchhhhcceEecccccCCcceeeEeCC
Confidence 999999998743 458999999988777655442 111111111 111000 00 000122334679
Q ss_pred HHHHHHHHHHCCCEEEEEeeee
Q 020710 287 EADVERALQKVGWKIRKRGLIT 308 (322)
Q Consensus 287 ~~~~~~~l~~aGf~vv~~~~~~ 308 (322)
.+++.++++++||++++.....
T Consensus 187 ~~~l~~ll~~aGf~~~~~~~~~ 208 (235)
T 3sm3_A 187 EKELVFLLTDCRFEIDYFRVKE 208 (235)
T ss_dssp HHHHHHHHHTTTEEEEEEEEEE
T ss_pred HHHHHHHHHHcCCEEEEEEecc
Confidence 9999999999999999876543
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.75 E-value=6.8e-18 Score=150.64 Aligned_cols=168 Identities=15% Similarity=0.129 Sum_probs=108.8
Q ss_pred HHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc-CCEEEEEeCCHHHHHHHHHHhHHhh-----------h---ccC
Q 020710 134 VENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ-GAIVSASDISAAMVAEARKKAEEEL-----------L---ADN 198 (322)
Q Consensus 134 ~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~~-----------~---~~~ 198 (322)
...+.+.+... ..++.+|||||||+|.....++.. +.+|+|+|+|+.|++.|++++.+.. + ...
T Consensus 58 ~~~l~~~l~~~-~~~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~ 136 (289)
T 2g72_A 58 LRCLAQTFATG-EVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGK 136 (289)
T ss_dssp HHHHHHHHHTS-CSCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCS
T ss_pred HHHHHHHhCCC-CCCCCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCc
Confidence 34555555432 235789999999999965544443 7799999999999999988654210 0 000
Q ss_pred C-C-------CCCCCCceEEccccc-C--------CCCccEEEEcccccccCcc--hHHHHHHHHHhccCCeEEEEECC-
Q 020710 199 G-G-------EAPVMPKFEVKDLES-L--------DGKYDTVVCLDVLIHYPQS--KADGMIAHLASLAEKRLILSFAP- 258 (322)
Q Consensus 199 ~-~-------~~~~~~~~~~~d~~~-~--------~~~fD~V~~~~~l~~~~~~--~~~~~l~~l~~~~~~~~il~~~~- 258 (322)
. . .....+.++.+|+.+ + +++||+|+|+.+++|++++ ....+++++++++++||.+.+..
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~ 216 (289)
T 2g72_A 137 GECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGA 216 (289)
T ss_dssp CCCHHHHHHHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred ccchhhhHHHHHhhhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 0 0 000001456667765 2 3569999999999996543 46799999999998888766531
Q ss_pred --ChhhHHHHHHhhccCCCCCCccccccCCHHHHHHHHHHCCCEEEEEeeeecceeh
Q 020710 259 --KTFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQKVGWKIRKRGLITTQFYF 313 (322)
Q Consensus 259 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~vv~~~~~~~~~~f 313 (322)
..++ .........++++.+++.++|+++||+++..........|
T Consensus 217 ~~~~~~-----------~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~~~~~~ 262 (289)
T 2g72_A 217 LEESWY-----------LAGEARLTVVPVSEEEVREALVRSGYKVRDLRTYIMPAHL 262 (289)
T ss_dssp ESCCEE-----------EETTEEEECCCCCHHHHHHHHHHTTEEEEEEEEEECCGGG
T ss_pred cCcceE-----------EcCCeeeeeccCCHHHHHHHHHHcCCeEEEeeEeeccccc
Confidence 1110 0001111234568999999999999999987766543333
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.75 E-value=1.7e-17 Score=142.34 Aligned_cols=112 Identities=25% Similarity=0.349 Sum_probs=88.1
Q ss_pred HHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccc
Q 020710 135 ENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLE 214 (322)
Q Consensus 135 ~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 214 (322)
+.+.+.+... ..++.+|||+|||+|.++..+++.+.+|+|+|+|+.+++.++++....+. + ++++++|+.
T Consensus 26 ~~~~~~l~~~-~~~~~~vLDlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~-------~~~~~~d~~ 95 (227)
T 1ve3_A 26 ETLEPLLMKY-MKKRGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREYAKSRES--N-------VEFIVGDAR 95 (227)
T ss_dssp HHHHHHHHHS-CCSCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--C-------CEEEECCTT
T ss_pred HHHHHHHHHh-cCCCCeEEEEeccCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCC--C-------ceEEECchh
Confidence 3444444432 13478999999999999999999988999999999999999999876542 2 389999987
Q ss_pred cC---CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEE
Q 020710 215 SL---DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSF 256 (322)
Q Consensus 215 ~~---~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~ 256 (322)
++ +++||+|++..++++...+....+++++++++++||.+.+
T Consensus 96 ~~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~ 140 (227)
T 1ve3_A 96 KLSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIM 140 (227)
T ss_dssp SCCSCTTCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred cCCCCCCcEEEEEEcCchHhCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence 75 4789999999995555544467999999998877775544
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=1.7e-17 Score=145.69 Aligned_cols=155 Identities=16% Similarity=0.082 Sum_probs=106.8
Q ss_pred CCCCCeEEEECCCcccchHHHHhcCC-EEEEEeCCHHHHHHHHHHhHHhhhccC-----------CC-CC---------C
Q 020710 146 SLKGIAVCDAGCGTGSLAIPLAKQGA-IVSASDISAAMVAEARKKAEEELLADN-----------GG-EA---------P 203 (322)
Q Consensus 146 ~~~~~~VLDvGcG~G~~~~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~-----------~~-~~---------~ 203 (322)
..++.+|||||||+|.++..+++.+. +|+|+|+|+.|++.+++++...+.... -+ .. .
T Consensus 54 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 133 (265)
T 2i62_A 54 AVKGELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLR 133 (265)
T ss_dssp SCCEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHH
T ss_pred ccCCCEEEEECCCccHHHHHHhhcccCeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhh
Confidence 34678999999999999999998887 899999999999999988754320000 00 00 0
Q ss_pred CCC-ceEEcccccC----C---CCccEEEEcccccccCcc--hHHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccC
Q 020710 204 VMP-KFEVKDLESL----D---GKYDTVVCLDVLIHYPQS--KADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELF 273 (322)
Q Consensus 204 ~~~-~~~~~d~~~~----~---~~fD~V~~~~~l~~~~~~--~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~ 273 (322)
..+ .+.++|+.+. + ++||+|+|..+++|++.. ....+++++.+++++||++.+...... ..+
T Consensus 134 ~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~--------~~~ 205 (265)
T 2i62_A 134 RAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALKS--------SYY 205 (265)
T ss_dssp HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSC--------CEE
T ss_pred hhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecCCC--------ceE
Confidence 003 6788888664 3 789999999999965543 467999999999887776654321000 000
Q ss_pred CCCCCccccccCCHHHHHHHHHHCCCEEEEEeeee
Q 020710 274 PGPSKATRAYLHAEADVERALQKVGWKIRKRGLIT 308 (322)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~l~~aGf~vv~~~~~~ 308 (322)
.........+.++.+++.++|+++||++++.....
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~ 240 (265)
T 2i62_A 206 MIGEQKFSSLPLGWETVRDAVEEAGYTIEQFEVIS 240 (265)
T ss_dssp EETTEEEECCCCCHHHHHHHHHHTTCEEEEEEEEC
T ss_pred EcCCccccccccCHHHHHHHHHHCCCEEEEEEEec
Confidence 00011112335688999999999999999877654
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=3.6e-18 Score=160.28 Aligned_cols=145 Identities=15% Similarity=0.260 Sum_probs=105.4
Q ss_pred CCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC---CCCccEE
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL---DGKYDTV 223 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~fD~V 223 (322)
.++.+|||||||+|.++..+++.+.+|+|+|+|+.|++.|+++ +.... ...|...+...+ +++||+|
T Consensus 106 ~~~~~VLDiGcG~G~~~~~l~~~g~~v~gvD~s~~~~~~a~~~----~~~~~------~~~~~~~~~~~l~~~~~~fD~I 175 (416)
T 4e2x_A 106 GPDPFIVEIGCNDGIMLRTIQEAGVRHLGFEPSSGVAAKAREK----GIRVR------TDFFEKATADDVRRTEGPANVI 175 (416)
T ss_dssp SSSCEEEEETCTTTTTHHHHHHTTCEEEEECCCHHHHHHHHTT----TCCEE------CSCCSHHHHHHHHHHHCCEEEE
T ss_pred CCCCEEEEecCCCCHHHHHHHHcCCcEEEECCCHHHHHHHHHc----CCCcc------eeeechhhHhhcccCCCCEEEE
Confidence 3678999999999999999999999999999999999999876 22110 012334444433 6899999
Q ss_pred EEcccccccCcchHHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCCCCCccccccCCHHHHHHHHHHCCCEEEE
Q 020710 224 VCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQKVGWKIRK 303 (322)
Q Consensus 224 ~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~vv~ 303 (322)
++.++++|+++ ...++++++++++++|++.+...... ..... ..+ .... ..+..+++.+++.++++++||++++
T Consensus 176 ~~~~vl~h~~d--~~~~l~~~~r~LkpgG~l~i~~~~~~-~~~~~-~~~-~~~~-~~~~~~~s~~~l~~ll~~aGf~~~~ 249 (416)
T 4e2x_A 176 YAANTLCHIPY--VQSVLEGVDALLAPDGVFVFEDPYLG-DIVAK-TSF-DQIF-DEHFFLFSATSVQGMAQRCGFELVD 249 (416)
T ss_dssp EEESCGGGCTT--HHHHHHHHHHHEEEEEEEEEEEECHH-HHHHH-TCG-GGCS-TTCCEECCHHHHHHHHHHTTEEEEE
T ss_pred EECChHHhcCC--HHHHHHHHHHHcCCCeEEEEEeCChH-Hhhhh-cch-hhhh-hhhhhcCCHHHHHHHHHHcCCEEEE
Confidence 99999999998 55999999999888877766422221 11111 111 1101 2344467999999999999999998
Q ss_pred Eeee
Q 020710 304 RGLI 307 (322)
Q Consensus 304 ~~~~ 307 (322)
.+..
T Consensus 250 ~~~~ 253 (416)
T 4e2x_A 250 VQRL 253 (416)
T ss_dssp EEEE
T ss_pred EEEc
Confidence 7664
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.74 E-value=5.1e-18 Score=152.67 Aligned_cols=154 Identities=17% Similarity=0.108 Sum_probs=111.5
Q ss_pred CCCCeEEEECCCcccchHHHH--hc-CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--CCCcc
Q 020710 147 LKGIAVCDAGCGTGSLAIPLA--KQ-GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL--DGKYD 221 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la--~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~fD 221 (322)
.++.+|||||||+|.++..++ .. +.+|+|+|+|+.|++.+++++...+..+++ +|+++|+.++ +++||
T Consensus 117 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v-------~~~~~d~~~~~~~~~fD 189 (305)
T 3ocj_A 117 RPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQI-------TLHRQDAWKLDTREGYD 189 (305)
T ss_dssp CTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGE-------EEEECCGGGCCCCSCEE
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCce-------EEEECchhcCCccCCeE
Confidence 467899999999999999985 22 679999999999999999999877766544 8999999876 58999
Q ss_pred EEEEcccccccCcch-HHHHHHHHHhccCCeEEEEECCCh----------hh-----HHHHHHhhccCCCCCCccccccC
Q 020710 222 TVVCLDVLIHYPQSK-ADGMIAHLASLAEKRLILSFAPKT----------FY-----YDLLKRVGELFPGPSKATRAYLH 285 (322)
Q Consensus 222 ~V~~~~~l~~~~~~~-~~~~l~~l~~~~~~~~il~~~~~~----------~~-----~~~~~~~~~~~~~~~~~~~~~~~ 285 (322)
+|++..+++|++++. ...+++++++++++||++.+.... |. ..........+..........++
T Consensus 190 ~v~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (305)
T 3ocj_A 190 LLTSNGLNIYEPDDARVTELYRRFWQALKPGGALVTSFLTPPPALSPDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALR 269 (305)
T ss_dssp EEECCSSGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCCCTTTCTTCCCCGGGSCHHHHHHHHHHHHHTTCCSCCCCC
T ss_pred EEEECChhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCcccccccceeeccccchhhhhhhHHHHHHhhhhhccC
Confidence 999999999998754 245899999988777766543211 00 00000000000000011122356
Q ss_pred CHHHHHHHHHHCCCEEEEEeee
Q 020710 286 AEADVERALQKVGWKIRKRGLI 307 (322)
Q Consensus 286 ~~~~~~~~l~~aGf~vv~~~~~ 307 (322)
+.+++.++++++||++++....
T Consensus 270 ~~~~~~~~l~~aGF~~v~~~~~ 291 (305)
T 3ocj_A 270 THAQTRAQLEEAGFTDLRFEDD 291 (305)
T ss_dssp CHHHHHHHHHHTTCEEEEEECC
T ss_pred CHHHHHHHHHHCCCEEEEEEcc
Confidence 8999999999999999987753
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.5e-17 Score=145.54 Aligned_cols=144 Identities=19% Similarity=0.240 Sum_probs=104.6
Q ss_pred CCCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--CCCccE
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL--DGKYDT 222 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~fD~ 222 (322)
.++.+|||||||+|.++..+++. +.+|+|+|+|+.|++.++++.. + +.|.++|+.++ +++||+
T Consensus 32 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~------~-------~~~~~~d~~~~~~~~~fD~ 98 (259)
T 2p35_A 32 ERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRLP------N-------TNFGKADLATWKPAQKADL 98 (259)
T ss_dssp SCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHST------T-------SEEEECCTTTCCCSSCEEE
T ss_pred CCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCC------C-------cEEEECChhhcCccCCcCE
Confidence 46789999999999999999988 8899999999999999988721 1 28999998776 678999
Q ss_pred EEEcccccccCcchHHHHHHHHHhccCCeEEEEEC-CChh---hHHHHHHhhc--cCCCC-CC--ccccccCCHHHHHHH
Q 020710 223 VVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFA-PKTF---YYDLLKRVGE--LFPGP-SK--ATRAYLHAEADVERA 293 (322)
Q Consensus 223 V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~-~~~~---~~~~~~~~~~--~~~~~-~~--~~~~~~~~~~~~~~~ 293 (322)
|++..+++|+++ ...+++++++++++||.+.+. +... ....+..+.. .|... .. ..+..+++.+++.++
T Consensus 99 v~~~~~l~~~~~--~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (259)
T 2p35_A 99 LYANAVFQWVPD--HLAVLSQLMDQLESGGVLAVQMPDNLQEPTHIAMHETADGGPWKDAFSGGGLRRKPLPPPSDYFNA 176 (259)
T ss_dssp EEEESCGGGSTT--HHHHHHHHGGGEEEEEEEEEEEECCTTSHHHHHHHHHHHHSTTGGGC-------CCCCCHHHHHHH
T ss_pred EEEeCchhhCCC--HHHHHHHHHHhcCCCeEEEEEeCCCCCcHHHHHHHHHhcCcchHHHhccccccccCCCCHHHHHHH
Confidence 999999999988 559999999988777765542 2211 1122222211 11110 00 113346789999999
Q ss_pred HHHCCCEEEEEe
Q 020710 294 LQKVGWKIRKRG 305 (322)
Q Consensus 294 l~~aGf~vv~~~ 305 (322)
|+++||++...+
T Consensus 177 l~~aGf~v~~~~ 188 (259)
T 2p35_A 177 LSPKSSRVDVWH 188 (259)
T ss_dssp HGGGEEEEEEEE
T ss_pred HHhcCCceEEEE
Confidence 999999865433
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.74 E-value=7.7e-17 Score=158.14 Aligned_cols=172 Identities=18% Similarity=0.247 Sum_probs=122.9
Q ss_pred hHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcC---CEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCce
Q 020710 132 KTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQG---AIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKF 208 (322)
Q Consensus 132 ~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~---~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~ 208 (322)
+.++.+++.+... ++.+|||||||+|.++..|++.+ .+|+|+|+|+.|++.|++++.......+ ....+++|
T Consensus 708 qRle~LLelL~~~---~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr--~gl~nVef 782 (950)
T 3htx_A 708 QRVEYALKHIRES---SASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEA--CNVKSATL 782 (950)
T ss_dssp HHHHHHHHHHHHS---CCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTC--SSCSEEEE
T ss_pred HHHHHHHHHhccc---CCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhh--cCCCceEE
Confidence 3455666777654 57899999999999999999987 7999999999999999997764321100 01123589
Q ss_pred EEcccccC---CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEECCChhhHHHHHHh----------hccCCC
Q 020710 209 EVKDLESL---DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRV----------GELFPG 275 (322)
Q Consensus 209 ~~~d~~~~---~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~----------~~~~~~ 275 (322)
+++|+.++ +++||+|+|..+++|++++....+++++.+++++|++++..++..+...+..+ ......
T Consensus 783 iqGDa~dLp~~d~sFDlVV~~eVLeHL~dp~l~~~L~eI~RvLKPG~LIISTPN~eyN~lF~~Lnp~tr~~dPd~~~~~~ 862 (950)
T 3htx_A 783 YDGSILEFDSRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPKLLIVSTPNYEFNTILQRSTPETQEENNSEPQLPK 862 (950)
T ss_dssp EESCTTSCCTTSCSCCEEEEESCGGGSCHHHHHHHHHHHHHTTCCSEEEEEECBGGGHHHHTCC------------CCSS
T ss_pred EECchHhCCcccCCeeEEEEeCchhhCChHHHHHHHHHHHHHcCCCEEEEEecCchhhhhhhhccccccccccccccccc
Confidence 99999876 58999999999999999987778999999988777655555554433332221 000011
Q ss_pred CCCccccccCCHHHHHH----HHHHCCCEEEEEeeee
Q 020710 276 PSKATRAYLHAEADVER----ALQKVGWKIRKRGLIT 308 (322)
Q Consensus 276 ~~~~~~~~~~~~~~~~~----~l~~aGf~vv~~~~~~ 308 (322)
.....+.+.+++++++. +..+.||++.......
T Consensus 863 fRh~DHrFEWTReEFr~Wae~LAer~GYsVefvGVGD 899 (950)
T 3htx_A 863 FRNHDHKFEWTREQFNQWASKLGKRHNYSVEFSGVGG 899 (950)
T ss_dssp CSCSSCSCCBCHHHHHHHHHHHHHHTTEEEEEEEESS
T ss_pred ccccCcceeecHHHHHHHHHHHHHhcCcEEEEEccCC
Confidence 12334555678888887 6777899887655543
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.74 E-value=6.6e-18 Score=151.47 Aligned_cols=138 Identities=18% Similarity=0.267 Sum_probs=101.0
Q ss_pred CCCeEEEECCCcccchHHHHh---cCCEEEEEeCCHHHHHHHHHHhHHh-hhccCCCCCCCCCceEEcccccC---C---
Q 020710 148 KGIAVCDAGCGTGSLAIPLAK---QGAIVSASDISAAMVAEARKKAEEE-LLADNGGEAPVMPKFEVKDLESL---D--- 217 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~---~~~~v~gvD~s~~~l~~a~~~~~~~-~~~~~~~~~~~~~~~~~~d~~~~---~--- 217 (322)
++.+|||||||+|.++..+++ .+.+|+|+|+|+.|++.++++.... +...+ +.|+++|++++ +
T Consensus 36 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~-------v~~~~~d~~~~~~~~~~~ 108 (299)
T 3g5t_A 36 ERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKN-------VSFKISSSDDFKFLGADS 108 (299)
T ss_dssp CCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTT-------EEEEECCTTCCGGGCTTT
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCc-------eEEEEcCHHhCCcccccc
Confidence 588999999999999999994 5789999999999999999998765 22222 38999999875 4
Q ss_pred ---CCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEE---CC----C-hhhHHHHHHhhccCCCCCCcccccc--
Q 020710 218 ---GKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSF---AP----K-TFYYDLLKRVGELFPGPSKATRAYL-- 284 (322)
Q Consensus 218 ---~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~---~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~-- 284 (322)
++||+|+|..++||+ + ...+++++++++++||++.+ .. . .......... .+. ......+|
T Consensus 109 ~~~~~fD~V~~~~~l~~~-~--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~w~~ 181 (299)
T 3g5t_A 109 VDKQKIDMITAVECAHWF-D--FEKFQRSAYANLRKDGTIAIWGYADPIFPDYPEFDDLMIEV---PYG-KQGLGPYWEQ 181 (299)
T ss_dssp TTSSCEEEEEEESCGGGS-C--HHHHHHHHHHHEEEEEEEEEEEEEEEECTTCGGGTTHHHHH---HHC-TTTTGGGSCT
T ss_pred ccCCCeeEEeHhhHHHHh-C--HHHHHHHHHHhcCCCcEEEEEecCCccccCcHHHHHHHHHh---ccC-cccccchhhc
Confidence 799999999999999 6 56999999998877776644 11 1 1111122211 111 00122334
Q ss_pred CCHHHHHHHHHHCCC
Q 020710 285 HAEADVERALQKVGW 299 (322)
Q Consensus 285 ~~~~~~~~~l~~aGf 299 (322)
...+.+.+++++.||
T Consensus 182 p~~~~~~~~l~~~gf 196 (299)
T 3g5t_A 182 PGRSRLRNMLKDSHL 196 (299)
T ss_dssp THHHHHHTTTTTCCC
T ss_pred hhhHHHHHhhhccCC
Confidence 356678999999999
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.3e-17 Score=145.09 Aligned_cols=149 Identities=17% Similarity=0.115 Sum_probs=105.3
Q ss_pred CCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------CC
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL--------DG 218 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--------~~ 218 (322)
.++.+|||||||+|.++..+++.+.+|+|+|+|+.|++.++++.... ++.|+++|+.++ ..
T Consensus 55 ~~~~~vLD~GcG~G~~~~~la~~~~~v~gvD~s~~~~~~a~~~~~~~-----------~~~~~~~d~~~~~~~~~~~~~~ 123 (245)
T 3ggd_A 55 NPELPLIDFACGNGTQTKFLSQFFPRVIGLDVSKSALEIAAKENTAA-----------NISYRLLDGLVPEQAAQIHSEI 123 (245)
T ss_dssp CTTSCEEEETCTTSHHHHHHHHHSSCEEEEESCHHHHHHHHHHSCCT-----------TEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCeEEEEcCCCCHHHHHHHHhCCCEEEEECCHHHHHHHHHhCccc-----------CceEEECccccccccccccccc
Confidence 46789999999999999999999889999999999999999887321 138999999875 13
Q ss_pred CccEEEEcccccccCcchHHHHHHHHHhccCCeEE-EEECCChhhHHHHHHhhccCCCC--------CCccccccCCHHH
Q 020710 219 KYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLI-LSFAPKTFYYDLLKRVGELFPGP--------SKATRAYLHAEAD 289 (322)
Q Consensus 219 ~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~i-l~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~ 289 (322)
.||+|++..+++|++++....+++++++++++||. +++........++..+....... ........++.++
T Consensus 124 ~~d~v~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (245)
T 3ggd_A 124 GDANIYMRTGFHHIPVEKRELLGQSLRILLGKQGAMYLIELGTGCIDFFNSLLEKYGQLPYELLLVMEHGIRPGIFTAED 203 (245)
T ss_dssp CSCEEEEESSSTTSCGGGHHHHHHHHHHHHTTTCEEEEEEECTTHHHHHHHHHHHHSSCCHHHHHHHTTTCCCCCCCHHH
T ss_pred CccEEEEcchhhcCCHHHHHHHHHHHHHHcCCCCEEEEEeCCccccHHHHHHHhCCCCCchhhhhccccCCCCCccCHHH
Confidence 59999999999999966678999999998766554 33322211111222111110000 0011112358899
Q ss_pred HHHHHHHCCCEEEEEeeee
Q 020710 290 VERALQKVGWKIRKRGLIT 308 (322)
Q Consensus 290 ~~~~l~~aGf~vv~~~~~~ 308 (322)
+.+++ +||+++......
T Consensus 204 ~~~~~--aGf~~~~~~~~~ 220 (245)
T 3ggd_A 204 IELYF--PDFEILSQGEGL 220 (245)
T ss_dssp HHHHC--TTEEEEEEECCB
T ss_pred HHHHh--CCCEEEeccccc
Confidence 99999 999999865543
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.5e-17 Score=140.90 Aligned_cols=162 Identities=11% Similarity=0.132 Sum_probs=112.4
Q ss_pred HHHHHHHhhhcCCCCCCeEEEECCCcccch-HHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcc
Q 020710 134 VENTMQMLNDEGSLKGIAVCDAGCGTGSLA-IPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKD 212 (322)
Q Consensus 134 ~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~-~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d 212 (322)
+.++++.+... .++.+|||+|||+|.++ ..++..+.+|+|+|+|+.|++.++++....+.. +.+.++|
T Consensus 11 ~~~~~~~~~~~--~~~~~vLDiGcG~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~---------~~~~~~d 79 (209)
T 2p8j_A 11 LYRFLKYCNES--NLDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENNFK---------LNISKGD 79 (209)
T ss_dssp HHHHHHHHHHS--SSCSEEEEESCCSSSCTHHHHHHTTCEEEEEECCHHHHHHHHHHHHHHTCC---------CCEEECC
T ss_pred HHHHHHHHhcc--CCCCEEEEECCCCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCc---------eEEEECc
Confidence 34555555544 35789999999999984 555666889999999999999999998765432 2899999
Q ss_pred cccC---CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEECCChhhHHHHH---Hhh----ccCCCCCCcccc
Q 020710 213 LESL---DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLK---RVG----ELFPGPSKATRA 282 (322)
Q Consensus 213 ~~~~---~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~---~~~----~~~~~~~~~~~~ 282 (322)
+.++ +++||+|++..+++|++.+....+++++++++++||++.+........... .+. ..... ......
T Consensus 80 ~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 158 (209)
T 2p8j_A 80 IRKLPFKDESMSFVYSYGTIFHMRKNDVKEAIDEIKRVLKPGGLACINFLTTKDERYNKGEKIGEGEFLQLER-GEKVIH 158 (209)
T ss_dssp TTSCCSCTTCEEEEEECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEETTSTTTTCSEEEETTEEEECC--CCCEEE
T ss_pred hhhCCCCCCceeEEEEcChHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEecccchhccchhhhccccceeccC-CCceeE
Confidence 8775 578999999999999975557899999999887777665432111000000 000 00000 111222
Q ss_pred ccCCHHHHHHHHHHCCCEEEEEeee
Q 020710 283 YLHAEADVERALQKVGWKIRKRGLI 307 (322)
Q Consensus 283 ~~~~~~~~~~~l~~aGf~vv~~~~~ 307 (322)
.+++.+++.+++.+.||...+....
T Consensus 159 ~~~~~~e~~~~~~~~g~~~~~~~~~ 183 (209)
T 2p8j_A 159 SYVSLEEADKYFKDMKVLFKEDRVV 183 (209)
T ss_dssp EEECHHHHHHTTTTSEEEEEEEEEE
T ss_pred EecCHHHHHHHHhhcCceeeeeeee
Confidence 4568999999999999987765433
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.7e-17 Score=143.73 Aligned_cols=99 Identities=28% Similarity=0.340 Sum_probs=83.3
Q ss_pred CCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--CCCccEEEE
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL--DGKYDTVVC 225 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~fD~V~~ 225 (322)
++.+|||||||+|.++..+++. .+|+|+|+|+.|++.++++....+.. +.+.++|+.+. +++||+|++
T Consensus 33 ~~~~vLdiG~G~G~~~~~l~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~---------~~~~~~d~~~~~~~~~fD~v~~ 102 (243)
T 3d2l_A 33 PGKRIADIGCGTGTATLLLADH-YEVTGVDLSEEMLEIAQEKAMETNRH---------VDFWVQDMRELELPEPVDAITI 102 (243)
T ss_dssp TTCEEEEESCTTCHHHHHHTTT-SEEEEEESCHHHHHHHHHHHHHTTCC---------CEEEECCGGGCCCSSCEEEEEE
T ss_pred CCCeEEEecCCCCHHHHHHhhC-CeEEEEECCHHHHHHHHHhhhhcCCc---------eEEEEcChhhcCCCCCcCEEEE
Confidence 4689999999999999999988 89999999999999999998765422 28999998775 578999999
Q ss_pred cc-cccccCc-chHHHHHHHHHhccCCeEEEEE
Q 020710 226 LD-VLIHYPQ-SKADGMIAHLASLAEKRLILSF 256 (322)
Q Consensus 226 ~~-~l~~~~~-~~~~~~l~~l~~~~~~~~il~~ 256 (322)
.. +++|+.+ +....+++++.+++++||++.+
T Consensus 103 ~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~ 135 (243)
T 3d2l_A 103 LCDSLNYLQTEADVKQTFDSAARLLTDGGKLLF 135 (243)
T ss_dssp CTTGGGGCCSHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred eCCchhhcCCHHHHHHHHHHHHHhcCCCeEEEE
Confidence 86 9999953 4467899999998877776654
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.73 E-value=1.1e-16 Score=136.85 Aligned_cols=137 Identities=17% Similarity=0.149 Sum_probs=101.8
Q ss_pred CCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC---CCCccEEEE
Q 020710 149 GIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL---DGKYDTVVC 225 (322)
Q Consensus 149 ~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~fD~V~~ 225 (322)
+.+|||||||+|.++..+++. +|+|+|+.|++.++++ . +.+.++|+.++ +++||+|++
T Consensus 48 ~~~vLDiG~G~G~~~~~l~~~----~~vD~s~~~~~~a~~~----~-----------~~~~~~d~~~~~~~~~~fD~v~~ 108 (219)
T 1vlm_A 48 EGRGVEIGVGTGRFAVPLKIK----IGVEPSERMAEIARKR----G-----------VFVLKGTAENLPLKDESFDFALM 108 (219)
T ss_dssp SSCEEEETCTTSTTHHHHTCC----EEEESCHHHHHHHHHT----T-----------CEEEECBTTBCCSCTTCEEEEEE
T ss_pred CCcEEEeCCCCCHHHHHHHHH----hccCCCHHHHHHHHhc----C-----------CEEEEcccccCCCCCCCeeEEEE
Confidence 789999999999999988776 9999999999999876 1 28889998765 578999999
Q ss_pred cccccccCcchHHHHHHHHHhccCCeEEEEEC---CChhhHHHHHHhhccCCCCCCccccccCCHHHHHHHHHHCCCEEE
Q 020710 226 LDVLIHYPQSKADGMIAHLASLAEKRLILSFA---PKTFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQKVGWKIR 302 (322)
Q Consensus 226 ~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~vv 302 (322)
..+++|+++ ...+++++.++++++|.+.+. .......+.... ........+..+++.+++.++++++||+++
T Consensus 109 ~~~l~~~~~--~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~ 183 (219)
T 1vlm_A 109 VTTICFVDD--PERALKEAYRILKKGGYLIVGIVDRESFLGREYEKN---KEKSVFYKNARFFSTEELMDLMRKAGFEEF 183 (219)
T ss_dssp ESCGGGSSC--HHHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHT---TTC-CCSTTCCCCCHHHHHHHHHHTTCEEE
T ss_pred cchHhhccC--HHHHHHHHHHHcCCCcEEEEEEeCCccHHHHHHHHH---hcCcchhcccccCCHHHHHHHHHHCCCeEE
Confidence 999999988 459999999988777655442 222222222222 111111123445799999999999999998
Q ss_pred EEeeeec
Q 020710 303 KRGLITT 309 (322)
Q Consensus 303 ~~~~~~~ 309 (322)
+......
T Consensus 184 ~~~~~~~ 190 (219)
T 1vlm_A 184 KVVQTLF 190 (219)
T ss_dssp EEEEECC
T ss_pred EEecccC
Confidence 8665543
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.3e-17 Score=144.24 Aligned_cols=109 Identities=17% Similarity=0.265 Sum_probs=87.2
Q ss_pred HHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccc
Q 020710 135 ENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLE 214 (322)
Q Consensus 135 ~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 214 (322)
+.+.+.+.... .++.+|||||||+|.++..+++.+.+|+|+|+|+.|++.++++... +.+.++|+.
T Consensus 28 ~~~~~~l~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~-------------~~~~~~d~~ 93 (239)
T 3bxo_A 28 SDIADLVRSRT-PEASSLLDVACGTGTHLEHFTKEFGDTAGLELSEDMLTHARKRLPD-------------ATLHQGDMR 93 (239)
T ss_dssp HHHHHHHHHHC-TTCCEEEEETCTTSHHHHHHHHHHSEEEEEESCHHHHHHHHHHCTT-------------CEEEECCTT
T ss_pred HHHHHHHHHhc-CCCCeEEEecccCCHHHHHHHHhCCcEEEEeCCHHHHHHHHHhCCC-------------CEEEECCHH
Confidence 34444444321 3578999999999999999999888999999999999999887521 289999987
Q ss_pred cC--CCCccEEEEcc-cccccCc-chHHHHHHHHHhccCCeEEEEEC
Q 020710 215 SL--DGKYDTVVCLD-VLIHYPQ-SKADGMIAHLASLAEKRLILSFA 257 (322)
Q Consensus 215 ~~--~~~fD~V~~~~-~l~~~~~-~~~~~~l~~l~~~~~~~~il~~~ 257 (322)
++ +++||+|+|.. +++|+++ +....+++++++++++||.+.+.
T Consensus 94 ~~~~~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 140 (239)
T 3bxo_A 94 DFRLGRKFSAVVSMFSSVGYLKTTEELGAAVASFAEHLEPGGVVVVE 140 (239)
T ss_dssp TCCCSSCEEEEEECTTGGGGCCSHHHHHHHHHHHHHTEEEEEEEEEC
T ss_pred HcccCCCCcEEEEcCchHhhcCCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 75 57899999755 9999975 44678999999998888877665
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.3e-17 Score=135.27 Aligned_cols=146 Identities=14% Similarity=0.090 Sum_probs=107.0
Q ss_pred HHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEccccc
Q 020710 136 NTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLES 215 (322)
Q Consensus 136 ~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 215 (322)
.+++.+... ++.+|||+|||+|.++..+++.+.+|+|+|+|+.+++.++++.. + +.+..+|...
T Consensus 8 ~~~~~~~~~---~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~------~-------v~~~~~d~~~ 71 (170)
T 3i9f_A 8 EYLPNIFEG---KKGVIVDYGCGNGFYCKYLLEFATKLYCIDINVIALKEVKEKFD------S-------VITLSDPKEI 71 (170)
T ss_dssp TTHHHHHSS---CCEEEEEETCTTCTTHHHHHTTEEEEEEECSCHHHHHHHHHHCT------T-------SEEESSGGGS
T ss_pred HHHHhcCcC---CCCeEEEECCCCCHHHHHHHhhcCeEEEEeCCHHHHHHHHHhCC------C-------cEEEeCCCCC
Confidence 344444433 57799999999999999999997799999999999999988811 1 3888888333
Q ss_pred CCCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCCCCCccccccCCHHHHHHHHH
Q 020710 216 LDGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQ 295 (322)
Q Consensus 216 ~~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 295 (322)
.+++||+|++..+++|+++ ...+++++.++++++|.+.+...... . ..........++.+++.++++
T Consensus 72 ~~~~~D~v~~~~~l~~~~~--~~~~l~~~~~~L~pgG~l~~~~~~~~---------~--~~~~~~~~~~~~~~~~~~~l~ 138 (170)
T 3i9f_A 72 PDNSVDFILFANSFHDMDD--KQHVISEVKRILKDDGRVIIIDWRKE---------N--TGIGPPLSIRMDEKDYMGWFS 138 (170)
T ss_dssp CTTCEEEEEEESCSTTCSC--HHHHHHHHHHHEEEEEEEEEEEECSS---------C--CSSSSCGGGCCCHHHHHHHTT
T ss_pred CCCceEEEEEccchhcccC--HHHHHHHHHHhcCCCCEEEEEEcCcc---------c--cccCchHhhhcCHHHHHHHHh
Confidence 3789999999999999988 45999999998877776654311100 0 001111223468999999998
Q ss_pred HCCCEEEEEeeeeccee
Q 020710 296 KVGWKIRKRGLITTQFY 312 (322)
Q Consensus 296 ~aGf~vv~~~~~~~~~~ 312 (322)
||++++........|
T Consensus 139 --Gf~~~~~~~~~~~~~ 153 (170)
T 3i9f_A 139 --NFVVEKRFNPTPYHF 153 (170)
T ss_dssp --TEEEEEEECSSTTEE
T ss_pred --CcEEEEccCCCCceE
Confidence 999998776654333
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.5e-17 Score=141.17 Aligned_cols=155 Identities=19% Similarity=0.283 Sum_probs=112.2
Q ss_pred HHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccc
Q 020710 135 ENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLE 214 (322)
Q Consensus 135 ~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 214 (322)
..+++.+. .++.+|||+|||+|.++..+++.+.+++|+|+|+.+++.++++.. .+.++|+.
T Consensus 23 ~~l~~~~~----~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~~~~~~~~~~~~~~---------------~~~~~d~~ 83 (230)
T 3cc8_A 23 PNLLKHIK----KEWKEVLDIGCSSGALGAAIKENGTRVSGIEAFPEAAEQAKEKLD---------------HVVLGDIE 83 (230)
T ss_dssp HHHHTTCC----TTCSEEEEETCTTSHHHHHHHTTTCEEEEEESSHHHHHHHHTTSS---------------EEEESCTT
T ss_pred HHHHHHhc----cCCCcEEEeCCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHhCC---------------cEEEcchh
Confidence 34444444 257899999999999999999989899999999999999876541 67888876
Q ss_pred cC-----CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEE-CCChhhHH-HHHHhhccCCCC----CCccccc
Q 020710 215 SL-----DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSF-APKTFYYD-LLKRVGELFPGP----SKATRAY 283 (322)
Q Consensus 215 ~~-----~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~-~~~~~~~~-~~~~~~~~~~~~----~~~~~~~ 283 (322)
+. +++||+|++..+++|++++ ..+++++.++++++|++.+ .+...... ........+... ....+..
T Consensus 84 ~~~~~~~~~~fD~v~~~~~l~~~~~~--~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (230)
T 3cc8_A 84 TMDMPYEEEQFDCVIFGDVLEHLFDP--WAVIEKVKPYIKQNGVILASIPNVSHISVLAPLLAGNWTYTEYGLLDKTHIR 161 (230)
T ss_dssp TCCCCSCTTCEEEEEEESCGGGSSCH--HHHHHHTGGGEEEEEEEEEEEECTTSHHHHHHHHTTCCCCBSSSTTBTTCCC
T ss_pred hcCCCCCCCccCEEEECChhhhcCCH--HHHHHHHHHHcCCCCEEEEEeCCcchHHHHHHHhcCCceeccCCCCCcceEE
Confidence 52 5789999999999999985 4999999998877665544 33322222 112122222211 1223345
Q ss_pred cCCHHHHHHHHHHCCCEEEEEeeeecc
Q 020710 284 LHAEADVERALQKVGWKIRKRGLITTQ 310 (322)
Q Consensus 284 ~~~~~~~~~~l~~aGf~vv~~~~~~~~ 310 (322)
+++.+++.++++++||++++.......
T Consensus 162 ~~~~~~~~~~l~~~Gf~~~~~~~~~~~ 188 (230)
T 3cc8_A 162 FFTFNEMLRMFLKAGYSISKVDRVYVD 188 (230)
T ss_dssp CCCHHHHHHHHHHTTEEEEEEEEEECC
T ss_pred EecHHHHHHHHHHcCCeEEEEEecccC
Confidence 679999999999999999987765543
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.72 E-value=7.5e-17 Score=135.94 Aligned_cols=142 Identities=16% Similarity=0.129 Sum_probs=105.4
Q ss_pred CCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC---CCCccEEE
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL---DGKYDTVV 224 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~fD~V~ 224 (322)
++ +|||||||+|.++..+++.+.+|+|+|+|+.|++.++++....+... .+.++|+.++ +++||+|+
T Consensus 30 ~~-~vLdiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~---------~~~~~d~~~~~~~~~~fD~v~ 99 (202)
T 2kw5_A 30 QG-KILCLAEGEGRNACFLASLGYEVTAVDQSSVGLAKAKQLAQEKGVKI---------TTVQSNLADFDIVADAWEGIV 99 (202)
T ss_dssp SS-EEEECCCSCTHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHTCCE---------EEECCBTTTBSCCTTTCSEEE
T ss_pred CC-CEEEECCCCCHhHHHHHhCCCeEEEEECCHHHHHHHHHHHHhcCCce---------EEEEcChhhcCCCcCCccEEE
Confidence 35 99999999999999999999999999999999999999987765432 8889998765 57899999
Q ss_pred EcccccccCcchHHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCCCCCccccccCCHHHHHHHHHHCCCEEEEE
Q 020710 225 CLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQKVGWKIRKR 304 (322)
Q Consensus 225 ~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~vv~~ 304 (322)
+. +.|++.+....+++++.++++++|.+.+........ ....+ ....+.++++.+++.++++ ||+++..
T Consensus 100 ~~--~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~------~~~~~-~~~~~~~~~~~~~l~~~l~--Gf~v~~~ 168 (202)
T 2kw5_A 100 SI--FCHLPSSLRQQLYPKVYQGLKPGGVFILEGFAPEQL------QYNTG-GPKDLDLLPKLETLQSELP--SLNWLIA 168 (202)
T ss_dssp EE--CCCCCHHHHHHHHHHHHTTCCSSEEEEEEEECTTTG------GGTSC-CSSSGGGCCCHHHHHHHCS--SSCEEEE
T ss_pred EE--hhcCCHHHHHHHHHHHHHhcCCCcEEEEEEeccccc------cCCCC-CCCcceeecCHHHHHHHhc--CceEEEE
Confidence 95 456665557799999999887777554431111000 00011 1122345679999999998 9999987
Q ss_pred eeeecc
Q 020710 305 GLITTQ 310 (322)
Q Consensus 305 ~~~~~~ 310 (322)
+.....
T Consensus 169 ~~~~~~ 174 (202)
T 2kw5_A 169 NNLERN 174 (202)
T ss_dssp EEEEEE
T ss_pred EEEEee
Confidence 665544
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.72 E-value=6.9e-17 Score=146.94 Aligned_cols=161 Identities=14% Similarity=0.147 Sum_probs=114.8
Q ss_pred HHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcc
Q 020710 135 ENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKD 212 (322)
Q Consensus 135 ~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d 212 (322)
..+++.+... ..++.+|||||||+|.++..+++. +.+++++|+| .+++.++++....+..+++ +|+.+|
T Consensus 153 ~~~~~~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v-------~~~~~d 223 (335)
T 2r3s_A 153 QLIAQLVNEN-KIEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQGVASRY-------HTIAGS 223 (335)
T ss_dssp HHHHHHHTC---CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHTCGGGE-------EEEESC
T ss_pred HHHHHhcccc-cCCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcCCCcce-------EEEecc
Confidence 3444444320 035789999999999999999987 6799999999 9999999998877665444 899999
Q ss_pred cccC--CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEE-EECC---Ch---hhHHHHHHhhccCCCCCCccccc
Q 020710 213 LESL--DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLIL-SFAP---KT---FYYDLLKRVGELFPGPSKATRAY 283 (322)
Q Consensus 213 ~~~~--~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il-~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~ 283 (322)
+.+. ++.||+|++.+++||++++....+++++++++++|+.+ ++.. .. ........+..... ..+..
T Consensus 224 ~~~~~~~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 299 (335)
T 2r3s_A 224 AFEVDYGNDYDLVLLPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDFIPNSDRITPPDAAAFSLVMLAT----TPNGD 299 (335)
T ss_dssp TTTSCCCSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCCCTTSSCSHHHHHHHHHHHHH----SSSCC
T ss_pred cccCCCCCCCcEEEEcchhccCCHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCcCCchHHHHHHHHHHee----CCCCC
Confidence 8764 45599999999999998877789999999988776643 3321 11 00011111100000 00223
Q ss_pred cCCHHHHHHHHHHCCCEEEEEeeee
Q 020710 284 LHAEADVERALQKVGWKIRKRGLIT 308 (322)
Q Consensus 284 ~~~~~~~~~~l~~aGf~vv~~~~~~ 308 (322)
.++.+++.++++++||++++.....
T Consensus 300 ~~t~~~~~~ll~~aGf~~~~~~~~~ 324 (335)
T 2r3s_A 300 AYTFAEYESMFSNAGFSHSQLHSLP 324 (335)
T ss_dssp CCCHHHHHHHHHHTTCSEEEEECCT
T ss_pred cCCHHHHHHHHHHCCCCeeeEEECC
Confidence 4689999999999999999875543
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.1e-16 Score=142.33 Aligned_cols=149 Identities=16% Similarity=0.206 Sum_probs=113.3
Q ss_pred HHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccc
Q 020710 135 ENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLE 214 (322)
Q Consensus 135 ~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 214 (322)
..+++.+... ++.+|||+|||+|.++..+++.|.+|+|+|+|+.+++.+++++...+.. +.+.++|+.
T Consensus 110 ~~~~~~~~~~---~~~~vLD~GcG~G~~~~~l~~~g~~v~~vD~s~~~~~~a~~~~~~~~~~---------~~~~~~d~~ 177 (286)
T 3m70_A 110 GDVVDAAKII---SPCKVLDLGCGQGRNSLYLSLLGYDVTSWDHNENSIAFLNETKEKENLN---------ISTALYDIN 177 (286)
T ss_dssp HHHHHHHHHS---CSCEEEEESCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCC---------EEEEECCGG
T ss_pred HHHHHHhhcc---CCCcEEEECCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHcCCc---------eEEEEeccc
Confidence 3455555543 5789999999999999999999999999999999999999998877652 289999988
Q ss_pred cC--CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCCCCCccccccCCHHHHHH
Q 020710 215 SL--DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADVER 292 (322)
Q Consensus 215 ~~--~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (322)
+. +++||+|++..+++|++++....+++++.+++++||++.+...... .... ......+.++.+++.+
T Consensus 178 ~~~~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~--------~~~~--~~~~~~~~~~~~~l~~ 247 (286)
T 3m70_A 178 AANIQENYDFIVSTVVFMFLNRERVPSIIKNMKEHTNVGGYNLIVAAMST--------DDVP--CPLPFSFTFAENELKE 247 (286)
T ss_dssp GCCCCSCEEEEEECSSGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCC--------SSSC--CSSCCSCCBCTTHHHH
T ss_pred cccccCCccEEEEccchhhCCHHHHHHHHHHHHHhcCCCcEEEEEEecCC--------CCCC--CCCCccccCCHHHHHH
Confidence 75 6899999999999999888888999999998877775443211000 0011 1122234567889999
Q ss_pred HHHHCCCEEEEEeee
Q 020710 293 ALQKVGWKIRKRGLI 307 (322)
Q Consensus 293 ~l~~aGf~vv~~~~~ 307 (322)
++.. |+++..+..
T Consensus 248 ~~~~--~~~~~~~~~ 260 (286)
T 3m70_A 248 YYKD--WEFLEYNEN 260 (286)
T ss_dssp HTTT--SEEEEEECC
T ss_pred HhcC--CEEEEEEcc
Confidence 9854 998886543
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.71 E-value=1e-16 Score=143.96 Aligned_cols=154 Identities=14% Similarity=0.106 Sum_probs=103.0
Q ss_pred CCCeEEEECCCcccchHHHHhc-CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEccc------cc-----
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQ-GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDL------ES----- 215 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~------~~----- 215 (322)
++.+|||||||+|..+..++.. +.+|+|+|+|+.|++.|+++..+.+...+. ....++|.+.|+ .+
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~--~~~~~~f~~~d~~~d~~~~~l~~~~ 125 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKT--KYYKFDYIQETIRSDTFVSSVREVF 125 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCC------CCCEEEEEECCTTSSSHHHHHHTTC
T ss_pred CCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhccccccc--cccccchhhhhcccchhhhhhhccc
Confidence 4689999999999887766666 578999999999999999998765432100 000015777776 21
Q ss_pred CCCCccEEEEccccccc-CcchHHHHHHHHHhccCCeEEEEECCChhhHHHHHHhh------------------------
Q 020710 216 LDGKYDTVVCLDVLIHY-PQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVG------------------------ 270 (322)
Q Consensus 216 ~~~~fD~V~~~~~l~~~-~~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~------------------------ 270 (322)
.+++||+|+|..++||+ ..+....+++++++++++||++.+..... ..+....
T Consensus 126 ~~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 203 (302)
T 2vdw_A 126 YFGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTMDG--DKLSKLTDKKTFIIHKNLPSSENYMSVEKIA 203 (302)
T ss_dssp CSSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEECH--HHHTTCCSCEEEECCSSSCTTTSEEEECEEE
T ss_pred cCCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeCCH--HHHHHHHhcCCcccccccccccceeeecccc
Confidence 25799999999999885 33346799999999988887765532111 1100000
Q ss_pred -----ccCCCC-CCccccccCCHHHHHHHHHHCCCEEEEEe
Q 020710 271 -----ELFPGP-SKATRAYLHAEADVERALQKVGWKIRKRG 305 (322)
Q Consensus 271 -----~~~~~~-~~~~~~~~~~~~~~~~~l~~aGf~vv~~~ 305 (322)
.+.+.. ......|+...+++.++++++||+++...
T Consensus 204 ~~~~~~~~~~~~~~~~~e~~v~~~el~~l~~~~Gl~lv~~~ 244 (302)
T 2vdw_A 204 DDRIVVYNPSTMSTPMTEYIIKKNDIVRVFNEYGFVLVDNV 244 (302)
T ss_dssp TTEEEEBCTTTBSSCEEEECCCHHHHHHHHHHTTEEEEEEE
T ss_pred ccccceeeccccCCCceeeeeEHHHHHHHHHHCCCEEEEec
Confidence 010110 11122356788999999999999998863
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=5.4e-18 Score=151.66 Aligned_cols=157 Identities=18% Similarity=0.218 Sum_probs=106.5
Q ss_pred CCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhcc----------------------------
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLAD---------------------------- 197 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~---------------------------- 197 (322)
++.+|||||||+|.++..+++. +.+|+|+|+|+.|++.|++++...+...
T Consensus 46 ~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (292)
T 3g07_A 46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSC 125 (292)
T ss_dssp TTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC-----------------------------------
T ss_pred CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccccc
Confidence 5789999999999999999988 6799999999999999998876543210
Q ss_pred ---------------------CCCCC-CCCCceEEcccccC--------CCCccEEEEccccccc----CcchHHHHHHH
Q 020710 198 ---------------------NGGEA-PVMPKFEVKDLESL--------DGKYDTVVCLDVLIHY----PQSKADGMIAH 243 (322)
Q Consensus 198 ---------------------~~~~~-~~~~~~~~~d~~~~--------~~~fD~V~~~~~l~~~----~~~~~~~~l~~ 243 (322)
..... +.++.|.++|+... +++||+|+|..+++|+ .++....++++
T Consensus 126 ~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~~ 205 (292)
T 3g07_A 126 FPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFRR 205 (292)
T ss_dssp ----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHHH
Confidence 00000 02458999998642 5899999999999887 45557899999
Q ss_pred HHhccCCeEEEEECCChhhHHHHHHhhccCCCCCCccccccCCHHHHHHHHHH--CCCEEEEEee
Q 020710 244 LASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQK--VGWKIRKRGL 306 (322)
Q Consensus 244 l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--aGf~vv~~~~ 306 (322)
+++++++||++++.+..|... ..............+...+.++++.++|.+ +||+.++.-.
T Consensus 206 ~~~~LkpGG~lil~~~~~~~y--~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~~~~GF~~~~~~~ 268 (292)
T 3g07_A 206 IYRHLRPGGILVLEPQPWSSY--GKRKTLTETIYKNYYRIQLKPEQFSSYLTSPDVGFSSYELVA 268 (292)
T ss_dssp HHHHEEEEEEEEEECCCHHHH--HTTTTSCHHHHHHHHHCCCCGGGHHHHHTSTTTCCCEEEEC-
T ss_pred HHHHhCCCcEEEEecCCchhh--hhhhcccHHHHhhhhcEEEcHHHHHHHHHhcCCCceEEEEec
Confidence 999998888888766554311 111000000000111112357899999999 9998776433
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.71 E-value=5e-17 Score=135.60 Aligned_cols=126 Identities=20% Similarity=0.258 Sum_probs=103.2
Q ss_pred CCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC---CCCccEEE
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL---DGKYDTVV 224 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~fD~V~ 224 (322)
++.+|||+|||+|.++..+++.+.+|+++|+|+.+++.++++... +.+.++|+.+. +++||+|+
T Consensus 46 ~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~~~~~~~~a~~~~~~-------------~~~~~~d~~~~~~~~~~~D~i~ 112 (195)
T 3cgg_A 46 RGAKILDAGCGQGRIGGYLSKQGHDVLGTDLDPILIDYAKQDFPE-------------ARWVVGDLSVDQISETDFDLIV 112 (195)
T ss_dssp TTCEEEEETCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHCTT-------------SEEEECCTTTSCCCCCCEEEEE
T ss_pred CCCeEEEECCCCCHHHHHHHHCCCcEEEEcCCHHHHHHHHHhCCC-------------CcEEEcccccCCCCCCceeEEE
Confidence 578999999999999999999999999999999999999887632 28899998765 57899999
Q ss_pred Ec-ccccccCcchHHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCCCCCccccccCCHHHHHHHHHHCCCEEEE
Q 020710 225 CL-DVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQKVGWKIRK 303 (322)
Q Consensus 225 ~~-~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~vv~ 303 (322)
+. .+++|++++....+++.+.+++++++++.+..... ..++.+++.++++++||++++
T Consensus 113 ~~~~~~~~~~~~~~~~~l~~~~~~l~~~G~l~~~~~~~---------------------~~~~~~~~~~~l~~~Gf~~~~ 171 (195)
T 3cgg_A 113 SAGNVMGFLAEDGREPALANIHRALGADGRAVIGFGAG---------------------RGWVFGDFLEVAERVGLELEN 171 (195)
T ss_dssp ECCCCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEETT---------------------SSCCHHHHHHHHHHHTEEEEE
T ss_pred ECCcHHhhcChHHHHHHHHHHHHHhCCCCEEEEEeCCC---------------------CCcCHHHHHHHHHHcCCEEee
Confidence 98 78989877667899999999887777665521110 014688999999999999988
Q ss_pred Eeee
Q 020710 304 RGLI 307 (322)
Q Consensus 304 ~~~~ 307 (322)
....
T Consensus 172 ~~~~ 175 (195)
T 3cgg_A 172 AFES 175 (195)
T ss_dssp EESS
T ss_pred eecc
Confidence 6544
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.70 E-value=6.5e-17 Score=142.05 Aligned_cols=144 Identities=19% Similarity=0.256 Sum_probs=100.6
Q ss_pred CCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC---CCCccEEE
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL---DGKYDTVV 224 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~fD~V~ 224 (322)
++.+|||||||+|.++..+++.+.+|+|+|+|+.|++.++++.. . .+.++|+.++ +++||+|+
T Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~-----~---------~~~~~d~~~~~~~~~~fD~v~ 119 (260)
T 2avn_A 54 NPCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKEMLEVAREKGV-----K---------NVVEAKAEDLPFPSGAFEAVL 119 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHHTC-----S---------CEEECCTTSCCSCTTCEEEEE
T ss_pred CCCeEEEeCCCcCHHHHHHHHcCCeEEEEeCCHHHHHHHHhhcC-----C---------CEEECcHHHCCCCCCCEEEEE
Confidence 57899999999999999999999999999999999999988753 1 4788888765 57899999
Q ss_pred EcccccccCcchHHHHHHHHHhccCCeEEEEEC-CChh--hHHHH--------HH-h--hccCC-CCCCccccccCCHHH
Q 020710 225 CLDVLIHYPQSKADGMIAHLASLAEKRLILSFA-PKTF--YYDLL--------KR-V--GELFP-GPSKATRAYLHAEAD 289 (322)
Q Consensus 225 ~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~-~~~~--~~~~~--------~~-~--~~~~~-~~~~~~~~~~~~~~~ 289 (322)
+..+++|+.++ ...+++++.+++++||.+.+. ++.. ..... .. + +.... .........+++.++
T Consensus 120 ~~~~~~~~~~~-~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (260)
T 2avn_A 120 ALGDVLSYVEN-KDKAFSEIRRVLVPDGLLIATVDNFYTFLQQMIEKDAWDQITRFLKTQTTSVGTTLFSFNSYAFKPED 198 (260)
T ss_dssp ECSSHHHHCSC-HHHHHHHHHHHEEEEEEEEEEEEBHHHHHHHHHHTTCHHHHHHHHHHCEEEEECSSEEEEEECBCGGG
T ss_pred Ecchhhhcccc-HHHHHHHHHHHcCCCeEEEEEeCChHHHHHHhhcchhHHHHHHHHhccccccCCCceeEEEeccCHHH
Confidence 99888887433 669999999988777765543 2221 01100 00 0 00000 000000112568888
Q ss_pred HHHHHHHCCCEEEEEeeeec
Q 020710 290 VERALQKVGWKIRKRGLITT 309 (322)
Q Consensus 290 ~~~~l~~aGf~vv~~~~~~~ 309 (322)
+.++ +||++++......
T Consensus 199 l~~l---aGf~~~~~~~~~~ 215 (260)
T 2avn_A 199 LDSL---EGFETVDIRGIGV 215 (260)
T ss_dssp GSSC---TTEEEEEEEEECS
T ss_pred HHHh---cCceEEEEECCCC
Confidence 8888 9999998765544
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=8.1e-17 Score=137.21 Aligned_cols=99 Identities=15% Similarity=0.219 Sum_probs=85.8
Q ss_pred CCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--CCCccEEEE
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL--DGKYDTVVC 225 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~fD~V~~ 225 (322)
++.+|||||||+|.++..+++.+.+|+|+|+|+.|++.++++....+ +++++++|+.++ +++||+|+|
T Consensus 51 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~----------~~~~~~~d~~~~~~~~~fD~v~~ 120 (216)
T 3ofk_A 51 AVSNGLEIGCAAGAFTEKLAPHCKRLTVIDVMPRAIGRACQRTKRWS----------HISWAATDILQFSTAELFDLIVV 120 (216)
T ss_dssp SEEEEEEECCTTSHHHHHHGGGEEEEEEEESCHHHHHHHHHHTTTCS----------SEEEEECCTTTCCCSCCEEEEEE
T ss_pred CCCcEEEEcCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHhcccCC----------CeEEEEcchhhCCCCCCccEEEE
Confidence 56799999999999999999998899999999999999999876533 138999999876 689999999
Q ss_pred cccccccCcc-hHHHHHHHHHhccCCeEEEEE
Q 020710 226 LDVLIHYPQS-KADGMIAHLASLAEKRLILSF 256 (322)
Q Consensus 226 ~~~l~~~~~~-~~~~~l~~l~~~~~~~~il~~ 256 (322)
..+++|++++ .+..+++++.+++++||++.+
T Consensus 121 ~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~ 152 (216)
T 3ofk_A 121 AEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVF 152 (216)
T ss_dssp ESCGGGSSSHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred ccHHHhCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence 9999999973 456889999998887776665
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.70 E-value=2.3e-16 Score=137.64 Aligned_cols=111 Identities=21% Similarity=0.331 Sum_probs=88.4
Q ss_pred HHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC
Q 020710 137 TMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL 216 (322)
Q Consensus 137 ~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 216 (322)
+.+++......++.+|||+|||+|.++..+++.|.+|+|+|+|+.|++.++++....+.. +.++++|+.++
T Consensus 30 ~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~---------v~~~~~d~~~~ 100 (252)
T 1wzn_A 30 VEEIFKEDAKREVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKERNLK---------IEFLQGDVLEI 100 (252)
T ss_dssp HHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCC---------CEEEESCGGGC
T ss_pred HHHHHHHhcccCCCEEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHhcCCc---------eEEEECChhhc
Confidence 334444332235789999999999999999999999999999999999999998766542 28999998775
Q ss_pred --CCCccEEEEcc-cccccCcchHHHHHHHHHhccCCeEEEEE
Q 020710 217 --DGKYDTVVCLD-VLIHYPQSKADGMIAHLASLAEKRLILSF 256 (322)
Q Consensus 217 --~~~fD~V~~~~-~l~~~~~~~~~~~l~~l~~~~~~~~il~~ 256 (322)
+++||+|+|.. .++|++.+....+++++++++++||++.+
T Consensus 101 ~~~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~ 143 (252)
T 1wzn_A 101 AFKNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFIT 143 (252)
T ss_dssp CCCSCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred ccCCCccEEEEcCCchhcCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence 57899999974 55666655678999999998877776654
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.7e-17 Score=144.19 Aligned_cols=92 Identities=21% Similarity=0.271 Sum_probs=78.0
Q ss_pred CCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC---CCCccEEE
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL---DGKYDTVV 224 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~fD~V~ 224 (322)
.+.+|||||||+|.++..|++.+.+|+|+|+|+.|++.|+++ .++.|+++|++++ +++||+|+
T Consensus 39 ~~~~vLDvGcGtG~~~~~l~~~~~~v~gvD~s~~ml~~a~~~--------------~~v~~~~~~~e~~~~~~~sfD~v~ 104 (257)
T 4hg2_A 39 ARGDALDCGCGSGQASLGLAEFFERVHAVDPGEAQIRQALRH--------------PRVTYAVAPAEDTGLPPASVDVAI 104 (257)
T ss_dssp CSSEEEEESCTTTTTHHHHHTTCSEEEEEESCHHHHHTCCCC--------------TTEEEEECCTTCCCCCSSCEEEEE
T ss_pred CCCCEEEEcCCCCHHHHHHHHhCCEEEEEeCcHHhhhhhhhc--------------CCceeehhhhhhhcccCCcccEEE
Confidence 357899999999999999999999999999999999887542 1138999999886 68999999
Q ss_pred EcccccccCcchHHHHHHHHHhccCCeEEEEE
Q 020710 225 CLDVLIHYPQSKADGMIAHLASLAEKRLILSF 256 (322)
Q Consensus 225 ~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~ 256 (322)
|..++||++ ...+++++++++++||++.+
T Consensus 105 ~~~~~h~~~---~~~~~~e~~rvLkpgG~l~~ 133 (257)
T 4hg2_A 105 AAQAMHWFD---LDRFWAELRRVARPGAVFAA 133 (257)
T ss_dssp ECSCCTTCC---HHHHHHHHHHHEEEEEEEEE
T ss_pred EeeehhHhh---HHHHHHHHHHHcCCCCEEEE
Confidence 999997774 34899999999888876644
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.70 E-value=7.4e-17 Score=136.95 Aligned_cols=129 Identities=21% Similarity=0.231 Sum_probs=95.0
Q ss_pred CCCeEEEECCCcccchHHHHhcCC-EEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC---CCCccEE
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQGA-IVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL---DGKYDTV 223 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~fD~V 223 (322)
++.+|||||||+|.++..+ +. +|+|+|+|+.|++.++++.. + +.++++|+.++ +++||+|
T Consensus 36 ~~~~vLdiG~G~G~~~~~l---~~~~v~~vD~s~~~~~~a~~~~~------~-------~~~~~~d~~~~~~~~~~fD~v 99 (211)
T 2gs9_A 36 PGESLLEVGAGTGYWLRRL---PYPQKVGVEPSEAMLAVGRRRAP------E-------ATWVRAWGEALPFPGESFDVV 99 (211)
T ss_dssp CCSEEEEETCTTCHHHHHC---CCSEEEEECCCHHHHHHHHHHCT------T-------SEEECCCTTSCCSCSSCEEEE
T ss_pred CCCeEEEECCCCCHhHHhC---CCCeEEEEeCCHHHHHHHHHhCC------C-------cEEEEcccccCCCCCCcEEEE
Confidence 5789999999999998877 67 99999999999999998861 1 28888898765 5789999
Q ss_pred EEcccccccCcchHHHHHHHHHhccCCeEEEEEC---CChhhHHHHHHhhccCCCCCCccccccCCHHHHHHHHHHCC
Q 020710 224 VCLDVLIHYPQSKADGMIAHLASLAEKRLILSFA---PKTFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQKVG 298 (322)
Q Consensus 224 ~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG 298 (322)
++..+++|+++ ...+++++.+++++||.+.+. +...+.......... +.....+..+++.++++++++ |
T Consensus 100 ~~~~~l~~~~~--~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~s~~~l~~~l~--G 171 (211)
T 2gs9_A 100 LLFTTLEFVED--VERVLLEARRVLRPGGALVVGVLEALSPWAALYRRLGEK--GVLPWAQARFLAREDLKALLG--P 171 (211)
T ss_dssp EEESCTTTCSC--HHHHHHHHHHHEEEEEEEEEEEECTTSHHHHHHHHHHHT--TCTTGGGCCCCCHHHHHHHHC--S
T ss_pred EEcChhhhcCC--HHHHHHHHHHHcCCCCEEEEEecCCcCcHHHHHHHHhhc--cCccccccccCCHHHHHHHhc--C
Confidence 99999999998 459999999988776655432 222222222222111 111122445679999999998 7
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=1.7e-17 Score=143.88 Aligned_cols=148 Identities=16% Similarity=0.100 Sum_probs=104.6
Q ss_pred HHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc-CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEc
Q 020710 133 TVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ-GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVK 211 (322)
Q Consensus 133 ~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (322)
..+.+.+.+.. ++.+|||||||+|..+..+++. +.+|+|||+|+.|++.|+++....+... .++.+
T Consensus 49 ~m~~~a~~~~~----~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~~~~~~~~~~~---------~~~~~ 115 (236)
T 3orh_A 49 YMHALAAAASS----KGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKV---------IPLKG 115 (236)
T ss_dssp HHHHHHHHHTT----TCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHHHHGGGCSSEE---------EEEES
T ss_pred HHHHHHHhhcc----CCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHHHHHhhCCCce---------EEEee
Confidence 33444455443 5889999999999999999987 5689999999999999999987766544 78888
Q ss_pred ccccC-----CCCccEEEE-----cccccccCcchHHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCCCCCccc
Q 020710 212 DLESL-----DGKYDTVVC-----LDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATR 281 (322)
Q Consensus 212 d~~~~-----~~~fD~V~~-----~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (322)
|+.+. +++||.|++ ...++|+++ ...+++++++++++||++.+....... ...........
T Consensus 116 ~a~~~~~~~~~~~FD~i~~D~~~~~~~~~~~~~--~~~~~~e~~rvLkPGG~l~f~~~~~~~-------~~~~~~~~~~~ 186 (236)
T 3orh_A 116 LWEDVAPTLPDGHFDGILYDTYPLSEETWHTHQ--FNFIKNHAFRLLKPGGVLTYCNLTSWG-------ELMKSKYSDIT 186 (236)
T ss_dssp CHHHHGGGSCTTCEEEEEECCCCCBGGGTTTHH--HHHHHHTHHHHEEEEEEEEECCHHHHH-------HHTTTTCSCHH
T ss_pred hHHhhcccccccCCceEEEeeeecccchhhhcc--hhhhhhhhhheeCCCCEEEEEecCCch-------hhhhhhhhhhh
Confidence 86543 678999975 456667777 559999999999999998875432211 11111011111
Q ss_pred cccCCHHHHHHHHHHCCCEEEEE
Q 020710 282 AYLHAEADVERALQKVGWKIRKR 304 (322)
Q Consensus 282 ~~~~~~~~~~~~l~~aGf~vv~~ 304 (322)
. ...+.+...|.++||+++..
T Consensus 187 ~--~~~~~~~~~L~eaGF~~~~i 207 (236)
T 3orh_A 187 I--MFEETQVPALLEAGFRRENI 207 (236)
T ss_dssp H--HHHHHTHHHHHHHTCCGGGE
T ss_pred h--hhHHHHHHHHHHcCCeEEEE
Confidence 1 12456778889999986443
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.2e-16 Score=147.32 Aligned_cols=147 Identities=14% Similarity=0.120 Sum_probs=109.2
Q ss_pred CCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC----CCCcc
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL----DGKYD 221 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~~fD 221 (322)
...+|||||||+|.++..+++. +.+++++|+ +.|++.|++++...+...++ +|+.+|+.+. +++||
T Consensus 179 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v-------~~~~~d~~~~~~~~p~~~D 250 (363)
T 3dp7_A 179 HPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLSGSERI-------HGHGANLLDRDVPFPTGFD 250 (363)
T ss_dssp CCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCTTGGGE-------EEEECCCCSSSCCCCCCCS
T ss_pred CCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcCcccce-------EEEEccccccCCCCCCCcC
Confidence 4689999999999999999985 678999999 99999999998876655444 9999999763 57899
Q ss_pred EEEEcccccccCcchHHHHHHHHHhccCCeEEE-EEC---CChhhHH----H--HHHhhccCCCCCCccccccCCHHHHH
Q 020710 222 TVVCLDVLIHYPQSKADGMIAHLASLAEKRLIL-SFA---PKTFYYD----L--LKRVGELFPGPSKATRAYLHAEADVE 291 (322)
Q Consensus 222 ~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il-~~~---~~~~~~~----~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (322)
+|++..++||++++....+++++++.+++|+.+ +.. +...... . .......+. ......++.+++.
T Consensus 251 ~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~t~~e~~ 326 (363)
T 3dp7_A 251 AVWMSQFLDCFSEEEVISILTRVAQSIGKDSKVYIMETLWDRQRYETASYCLTQISLYFTAMA----NGNSKMFHSDDLI 326 (363)
T ss_dssp EEEEESCSTTSCHHHHHHHHHHHHHHCCTTCEEEEEECCTTSCSSHHHHHHHHHHHHHHHHSS----CSSCCSCCHHHHH
T ss_pred EEEEechhhhCCHHHHHHHHHHHHHhcCCCcEEEEEeeccCCccccchhhHHHHhhhhHHhhh----CCCCcccCHHHHH
Confidence 999999999999987889999999987655544 322 2111111 0 000000111 1122345899999
Q ss_pred HHHHHCCCEEEEEee
Q 020710 292 RALQKVGWKIRKRGL 306 (322)
Q Consensus 292 ~~l~~aGf~vv~~~~ 306 (322)
++|+++||+++++..
T Consensus 327 ~ll~~AGf~~v~~~~ 341 (363)
T 3dp7_A 327 RCIENAGLEVEEIQD 341 (363)
T ss_dssp HHHHTTTEEESCCCC
T ss_pred HHHHHcCCeEEEEEe
Confidence 999999999987653
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=1.6e-17 Score=151.13 Aligned_cols=144 Identities=16% Similarity=0.107 Sum_probs=109.2
Q ss_pred CCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-CCCccEEE
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-DGKYDTVV 224 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~fD~V~ 224 (322)
+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++++.+.+...++ +|+.+|+.+. +..||+|+
T Consensus 169 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v-------~~~~~d~~~~~p~~~D~v~ 240 (332)
T 3i53_A 169 ALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTGLSGRA-------QVVVGSFFDPLPAGAGGYV 240 (332)
T ss_dssp GGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTE-------EEEECCTTSCCCCSCSEEE
T ss_pred CCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcCcCcCe-------EEecCCCCCCCCCCCcEEE
Confidence 4679999999999999999886 678999999 99999999999887765544 9999998643 44899999
Q ss_pred EcccccccCcchHHHHHHHHHhccCCeEEEEE-CC---Ch---hhHHHHHHhhccCCCCCCccccccCCHHHHHHHHHHC
Q 020710 225 CLDVLIHYPQSKADGMIAHLASLAEKRLILSF-AP---KT---FYYDLLKRVGELFPGPSKATRAYLHAEADVERALQKV 297 (322)
Q Consensus 225 ~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~-~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a 297 (322)
|.+++||++++....+++++++.+++|+.+.+ .. .. ...+... +. . .....++.++++++++++
T Consensus 241 ~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~d~~~-~~-~-------~~~~~~t~~e~~~ll~~a 311 (332)
T 3i53_A 241 LSAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVAGDEHAGTGMDLRM-LT-Y-------FGGKERSLAELGELAAQA 311 (332)
T ss_dssp EESCGGGSCHHHHHHHHHHHHHHHTTTCEEEEEECCCC---CCHHHHHHH-HH-H-------HSCCCCCHHHHHHHHHHT
T ss_pred EehhhccCCHHHHHHHHHHHHHhcCCCCEEEEEeecCCCCCccHHHHHHH-Hh-h-------CCCCCCCHHHHHHHHHHC
Confidence 99999999998778999999998766554433 21 11 1111110 00 0 122245899999999999
Q ss_pred CCEEEEEeeee
Q 020710 298 GWKIRKRGLIT 308 (322)
Q Consensus 298 Gf~vv~~~~~~ 308 (322)
||++++.....
T Consensus 312 Gf~~~~~~~~~ 322 (332)
T 3i53_A 312 GLAVRAAHPIS 322 (332)
T ss_dssp TEEEEEEEECS
T ss_pred CCEEEEEEECC
Confidence 99999876553
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=2.2e-16 Score=145.87 Aligned_cols=147 Identities=17% Similarity=0.140 Sum_probs=110.1
Q ss_pred CCCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-CCCccEE
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-DGKYDTV 223 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~fD~V 223 (322)
.+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++++...++..++ +|+.+|+.+. +..||+|
T Consensus 201 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v-------~~~~~d~~~~~p~~~D~v 272 (369)
T 3gwz_A 201 SGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRGLADRC-------EILPGDFFETIPDGADVY 272 (369)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTE-------EEEECCTTTCCCSSCSEE
T ss_pred ccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcCcCCce-------EEeccCCCCCCCCCceEE
Confidence 45789999999999999999987 678999999 99999999999887765544 9999998754 4489999
Q ss_pred EEcccccccCcchHHHHHHHHHhccCCeEEEEE----CCChhhH-HHHHHhhccCCCCCCccccccCCHHHHHHHHHHCC
Q 020710 224 VCLDVLIHYPQSKADGMIAHLASLAEKRLILSF----APKTFYY-DLLKRVGELFPGPSKATRAYLHAEADVERALQKVG 298 (322)
Q Consensus 224 ~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG 298 (322)
++..++||++++....+++++++.+++|+.+.+ .+..... .....+..+. ......++.++++++++++|
T Consensus 273 ~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~d~~~~~-----~~~g~~~t~~e~~~ll~~aG 347 (369)
T 3gwz_A 273 LIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVIDNLIDERPAASTLFVDLLLLV-----LVGGAERSESEFAALLEKSG 347 (369)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEEBCCSSCCHHHHHHHHHHHH-----HHSCCCBCHHHHHHHHHTTT
T ss_pred EhhhhhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhHhhHHHHh-----hcCCccCCHHHHHHHHHHCC
Confidence 999999999998778999999998766554433 1221111 0001110000 01223468999999999999
Q ss_pred CEEEEEee
Q 020710 299 WKIRKRGL 306 (322)
Q Consensus 299 f~vv~~~~ 306 (322)
|++++...
T Consensus 348 f~~~~~~~ 355 (369)
T 3gwz_A 348 LRVERSLP 355 (369)
T ss_dssp EEEEEEEE
T ss_pred CeEEEEEE
Confidence 99998755
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.68 E-value=1.8e-16 Score=147.11 Aligned_cols=164 Identities=18% Similarity=0.113 Sum_probs=110.4
Q ss_pred CCCCeEEEECCCcccchHHHHhc---CCEEEEEeCCHHHHHHHHHHhHHhhhcc-CCCCCCCCCceEEcccccC------
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQ---GAIVSASDISAAMVAEARKKAEEELLAD-NGGEAPVMPKFEVKDLESL------ 216 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~-~~~~~~~~~~~~~~d~~~~------ 216 (322)
.++.+|||||||+|.++..+++. +.+|+|+|+|+.|++.+++++....... . .....++.|+++|+.++
T Consensus 82 ~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g-~~~~~~v~~~~~d~~~l~~~~~~ 160 (383)
T 4fsd_A 82 LEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFG-SPSRSNVRFLKGFIENLATAEPE 160 (383)
T ss_dssp GTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHS-STTCCCEEEEESCTTCGGGCBSC
T ss_pred CCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhccc-ccCCCceEEEEccHHHhhhcccC
Confidence 35789999999999999999886 5699999999999999999876542100 0 00001238999998763
Q ss_pred ---CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEECC---ChhhHHHHHHhhccCCCCCCccccccCCHHHH
Q 020710 217 ---DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAP---KTFYYDLLKRVGELFPGPSKATRAYLHAEADV 290 (322)
Q Consensus 217 ---~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (322)
+++||+|++..+++|+++ ...+++++++++++||++.+.. ..............+.. .....++.+++
T Consensus 161 ~~~~~~fD~V~~~~~l~~~~d--~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 234 (383)
T 4fsd_A 161 GVPDSSVDIVISNCVCNLSTN--KLALFKEIHRVLRDGGELYFSDVYADRRLSEAAQQDPILYGE----CLGGALYLEDF 234 (383)
T ss_dssp CCCTTCEEEEEEESCGGGCSC--HHHHHHHHHHHEEEEEEEEEEEEEESSCCCHHHHHCHHHHHT----TCTTCCBHHHH
T ss_pred CCCCCCEEEEEEccchhcCCC--HHHHHHHHHHHcCCCCEEEEEEeccccccCHhHhhhHHHhhc----ccccCCCHHHH
Confidence 579999999999999998 5599999999988777665431 11111111111111110 01123467999
Q ss_pred HHHHHHCCCEEEEEee-eecceehhhhh
Q 020710 291 ERALQKVGWKIRKRGL-ITTQFYFARLV 317 (322)
Q Consensus 291 ~~~l~~aGf~vv~~~~-~~~~~~f~~~~ 317 (322)
.++|+++||++++... ....+.+..+.
T Consensus 235 ~~ll~~aGF~~v~~~~~~~~~~~~~~~~ 262 (383)
T 4fsd_A 235 RRLVAEAGFRDVRLVSVGPVDVSDPQLR 262 (383)
T ss_dssp HHHHHHTTCCCEEEEEEEEECCCCHHHH
T ss_pred HHHHHHCCCceEEEEeccccccCCHhHH
Confidence 9999999998775433 22334444333
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.68 E-value=8.6e-17 Score=140.84 Aligned_cols=107 Identities=20% Similarity=0.201 Sum_probs=82.8
Q ss_pred HHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEccc
Q 020710 134 VENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDL 213 (322)
Q Consensus 134 ~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~ 213 (322)
++.+++.+.. .++.+|||||||+|.++..|++++++|+|+|+|+.|++.++++....... ..+...+.
T Consensus 34 ~~~il~~l~l---~~g~~VLDlGcGtG~~a~~La~~g~~V~gvD~S~~ml~~Ar~~~~~~~v~---------~~~~~~~~ 101 (261)
T 3iv6_A 34 RENDIFLENI---VPGSTVAVIGASTRFLIEKALERGASVTVFDFSQRMCDDLAEALADRCVT---------IDLLDITA 101 (261)
T ss_dssp HHHHHHTTTC---CTTCEEEEECTTCHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTSSSCCE---------EEECCTTS
T ss_pred HHHHHHhcCC---CCcCEEEEEeCcchHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhccce---------eeeeeccc
Confidence 3555555543 46789999999999999999999999999999999999999987653211 13333333
Q ss_pred ---ccCCCCccEEEEcccccccCcchHHHHHHHHHhccCCeE
Q 020710 214 ---ESLDGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRL 252 (322)
Q Consensus 214 ---~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~ 252 (322)
...+++||+|++..+++|++.++...+++++.+++++|.
T Consensus 102 ~~~~~~~~~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lLPGG~ 143 (261)
T 3iv6_A 102 EIPKELAGHFDFVLNDRLINRFTTEEARRACLGMLSLVGSGT 143 (261)
T ss_dssp CCCGGGTTCCSEEEEESCGGGSCHHHHHHHHHHHHHHHTTSE
T ss_pred ccccccCCCccEEEEhhhhHhCCHHHHHHHHHHHHHhCcCcE
Confidence 223679999999999999987777889999998773333
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.68 E-value=3.6e-16 Score=134.44 Aligned_cols=139 Identities=21% Similarity=0.227 Sum_probs=105.8
Q ss_pred hhHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEE
Q 020710 131 SKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEV 210 (322)
Q Consensus 131 ~~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~ 210 (322)
..+++.++..+. .++.+|||||||+|.++..+++.+.+|+|+|+|+.|++.++++.. + ++|++
T Consensus 35 ~~l~~~~~~~~~----~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~------~-------~~~~~ 97 (226)
T 3m33_A 35 ELTFDLWLSRLL----TPQTRVLEAGCGHGPDAARFGPQAARWAAYDFSPELLKLARANAP------H-------ADVYE 97 (226)
T ss_dssp THHHHHHHHHHC----CTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHCT------T-------SEEEE
T ss_pred HHHHHHHHHhcC----CCCCeEEEeCCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHhCC------C-------ceEEE
Confidence 344455444332 257899999999999999999999999999999999999998721 1 38999
Q ss_pred ccccc-C----CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCCCCCccccccC
Q 020710 211 KDLES-L----DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLH 285 (322)
Q Consensus 211 ~d~~~-~----~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (322)
+|+.+ + +++||+|++. .+ ...+++++.+++++||.+.. .....
T Consensus 98 ~d~~~~~~~~~~~~fD~v~~~------~~--~~~~l~~~~~~LkpgG~l~~------------------------~~~~~ 145 (226)
T 3m33_A 98 WNGKGELPAGLGAPFGLIVSR------RG--PTSVILRLPELAAPDAHFLY------------------------VGPRL 145 (226)
T ss_dssp CCSCSSCCTTCCCCEEEEEEE------SC--CSGGGGGHHHHEEEEEEEEE------------------------EESSS
T ss_pred cchhhccCCcCCCCEEEEEeC------CC--HHHHHHHHHHHcCCCcEEEE------------------------eCCcC
Confidence 99843 3 5789999987 23 23788888888888877760 00122
Q ss_pred CHHHHHHHHHHCCCEEEEEeeeecceehhhhhh
Q 020710 286 AEADVERALQKVGWKIRKRGLITTQFYFARLVE 318 (322)
Q Consensus 286 ~~~~~~~~l~~aGf~vv~~~~~~~~~~f~~~~~ 318 (322)
+.+++.+++.++||+++.........+|....+
T Consensus 146 ~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~ 178 (226)
T 3m33_A 146 NVPEVPERLAAVGWDIVAEDHVSVLAHAPTWED 178 (226)
T ss_dssp CCTHHHHHHHHTTCEEEEEEEEEEEEEECSHHH
T ss_pred CHHHHHHHHHHCCCeEEEEEeeeecccCcCHHH
Confidence 456899999999999999888887787776554
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=2e-16 Score=146.19 Aligned_cols=151 Identities=16% Similarity=0.091 Sum_probs=110.2
Q ss_pred CCCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEccccc-CCCCccEE
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLES-LDGKYDTV 223 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~fD~V 223 (322)
.++.+|||||||+|.++..+++. +.+++++|+ +.+++.+++++...+...++ +|+.+|+.+ ++..||+|
T Consensus 181 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v-------~~~~~d~~~~~~~~~D~v 252 (374)
T 1qzz_A 181 SAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRV-------TVAEGDFFKPLPVTADVV 252 (374)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTE-------EEEECCTTSCCSCCEEEE
T ss_pred CCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcCCCCce-------EEEeCCCCCcCCCCCCEE
Confidence 35789999999999999999987 578999999 99999999999877665444 899999865 35569999
Q ss_pred EEcccccccCcchHHHHHHHHHhccCCeEEEE-ECC-----ChhhHHHHHHhhccCCCCCCccccccCCHHHHHHHHHHC
Q 020710 224 VCLDVLIHYPQSKADGMIAHLASLAEKRLILS-FAP-----KTFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQKV 297 (322)
Q Consensus 224 ~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~-~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a 297 (322)
++..++||++++....+++++++++++|+.+. ... ..... ........... .......++.+++.++++++
T Consensus 253 ~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~ll~~a 329 (374)
T 1qzz_A 253 LLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGADR-FFSTLLDLRML--TFMGGRVRTRDEVVDLAGSA 329 (374)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH-------H-HHHHHHHHHHH--HHHSCCCCCHHHHHHHHHTT
T ss_pred EEeccccCCCHHHHHHHHHHHHHhcCCCcEEEEEechhhcCCCCCc-chhhhcchHHH--HhCCCcCCCHHHHHHHHHHC
Confidence 99999999998777799999999887666443 222 11100 00111000000 00112346899999999999
Q ss_pred CCEEEEEeeee
Q 020710 298 GWKIRKRGLIT 308 (322)
Q Consensus 298 Gf~vv~~~~~~ 308 (322)
||++++.....
T Consensus 330 Gf~~~~~~~~~ 340 (374)
T 1qzz_A 330 GLALASERTSG 340 (374)
T ss_dssp TEEEEEEEEEC
T ss_pred CCceEEEEECC
Confidence 99999876554
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=2.6e-16 Score=144.70 Aligned_cols=149 Identities=19% Similarity=0.202 Sum_probs=110.5
Q ss_pred CCCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEccccc-CCCCccEE
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLES-LDGKYDTV 223 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~fD~V 223 (322)
.++.+|||||||+|.++..+++. +.+++++|+ +.+++.+++++...+...++ +|+.+|+.+ ++..||+|
T Consensus 182 ~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v-------~~~~~d~~~~~~~~~D~v 253 (360)
T 1tw3_A 182 TNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRV-------DVVEGDFFEPLPRKADAI 253 (360)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTE-------EEEECCTTSCCSSCEEEE
T ss_pred ccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcCCCCce-------EEEeCCCCCCCCCCccEE
Confidence 35789999999999999999987 568999999 99999999998877665444 899999865 35569999
Q ss_pred EEcccccccCcchHHHHHHHHHhccCCeEEEEE-CCC----h---hhHHHHHHhhccCCCCCCccccccCCHHHHHHHHH
Q 020710 224 VCLDVLIHYPQSKADGMIAHLASLAEKRLILSF-APK----T---FYYDLLKRVGELFPGPSKATRAYLHAEADVERALQ 295 (322)
Q Consensus 224 ~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~-~~~----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 295 (322)
++..++||++++....+++++++++++|+.+.+ ... . ....+........ .+...++.+++.++++
T Consensus 254 ~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~t~~e~~~ll~ 327 (360)
T 1tw3_A 254 ILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVF------LGGALRTREKWDGLAA 327 (360)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHH------HSCCCCBHHHHHHHHH
T ss_pred EEcccccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEeccCCCCCcchhhhccHHHhhh------cCCcCCCHHHHHHHHH
Confidence 999999999987777999999998877664433 221 1 1111111000000 0123468999999999
Q ss_pred HCCCEEEEEeeeec
Q 020710 296 KVGWKIRKRGLITT 309 (322)
Q Consensus 296 ~aGf~vv~~~~~~~ 309 (322)
++||++++......
T Consensus 328 ~aGf~~~~~~~~~~ 341 (360)
T 1tw3_A 328 SAGLVVEEVRQLPS 341 (360)
T ss_dssp HTTEEEEEEEEEEC
T ss_pred HCCCeEEEEEeCCC
Confidence 99999998766543
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=1.1e-16 Score=147.25 Aligned_cols=160 Identities=13% Similarity=0.007 Sum_probs=114.3
Q ss_pred HHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcc
Q 020710 135 ENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKD 212 (322)
Q Consensus 135 ~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d 212 (322)
..+++.+. ..++.+|||||||+|.++..+++. +.+++++|+ +.+++.+++++...+..+++ +|+.+|
T Consensus 180 ~~l~~~~~---~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v-------~~~~~d 248 (359)
T 1x19_A 180 QLLLEEAK---LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRM-------RGIAVD 248 (359)
T ss_dssp HHHHHHCC---CTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCTTTE-------EEEECC
T ss_pred HHHHHhcC---CCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcCCCCCE-------EEEeCc
Confidence 44444443 245789999999999999999987 679999999 99999999999877665544 899999
Q ss_pred cccC-CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEE-EEC---CCh---hhHHHHHHhhccCCCCCCcccccc
Q 020710 213 LESL-DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLIL-SFA---PKT---FYYDLLKRVGELFPGPSKATRAYL 284 (322)
Q Consensus 213 ~~~~-~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il-~~~---~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 284 (322)
+.+. ...+|+|++..++||++++....+++++++.+++|+.+ ++. +.. ....+. ....... .......+
T Consensus 249 ~~~~~~~~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~-~~~~~~~--~g~~~~~~ 325 (359)
T 1x19_A 249 IYKESYPEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLS-HYILGAG--MPFSVLGF 325 (359)
T ss_dssp TTTSCCCCCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEECCCCTTSCCHHHHH-HHGGGGG--SSCCCCCC
T ss_pred cccCCCCCCCEEEEechhccCCHHHHHHHHHHHHHhcCCCCEEEEEecccCCCCCchHHHHH-HHHHhcC--CCCcccCC
Confidence 9875 33459999999999999877889999999987665544 322 111 111111 1111010 01111224
Q ss_pred CCHHHHHHHHHHCCCEEEEEeeee
Q 020710 285 HAEADVERALQKVGWKIRKRGLIT 308 (322)
Q Consensus 285 ~~~~~~~~~l~~aGf~vv~~~~~~ 308 (322)
++.+++.++++++||++++.....
T Consensus 326 ~t~~e~~~ll~~aGf~~v~~~~~~ 349 (359)
T 1x19_A 326 KEQARYKEILESLGYKDVTMVRKY 349 (359)
T ss_dssp CCGGGHHHHHHHHTCEEEEEEEET
T ss_pred CCHHHHHHHHHHCCCceEEEEecC
Confidence 688999999999999998876543
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.68 E-value=5.2e-16 Score=142.22 Aligned_cols=144 Identities=19% Similarity=0.178 Sum_probs=108.3
Q ss_pred CCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC----CCCccE
Q 020710 149 GIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL----DGKYDT 222 (322)
Q Consensus 149 ~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~~fD~ 222 (322)
+.+|||||||+|.++..+++. +.+++++|+ +.+++.++++....+..+++ +|+.+|+.+. ++.||+
T Consensus 180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v-------~~~~~d~~~~~~~~~~~~D~ 251 (352)
T 3mcz_A 180 ARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHDLGGRV-------EFFEKNLLDARNFEGGAADV 251 (352)
T ss_dssp CCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCGGGE-------EEEECCTTCGGGGTTCCEEE
T ss_pred CCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcCCCCce-------EEEeCCcccCcccCCCCccE
Confidence 789999999999999999987 678999999 88999999998887765544 9999998764 567999
Q ss_pred EEEcccccccCcchHHHHHHHHHhccCCeEEEEEC----CCh---hhHHHHHHhhccCCCCCCccccccCCHHHHHHHHH
Q 020710 223 VVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFA----PKT---FYYDLLKRVGELFPGPSKATRAYLHAEADVERALQ 295 (322)
Q Consensus 223 V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~----~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 295 (322)
|++..++||++++....+++++++.+++|+.+.+. +.. ........+..... ..+...++.++++++++
T Consensus 252 v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~t~~e~~~ll~ 327 (352)
T 3mcz_A 252 VMLNDCLHYFDAREAREVIGHAAGLVKPGGALLILTMTMNDDRVTPALSADFSLHMMVN----TNHGELHPTPWIAGVVR 327 (352)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEECCCTTSSSSHHHHHHHHHHHHH----STTCCCCCHHHHHHHHH
T ss_pred EEEecccccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCCchHHHhhHHHHhh----CCCCCcCCHHHHHHHHH
Confidence 99999999999887789999999988776655431 111 11111111111100 00122458999999999
Q ss_pred HCCCEEEEE
Q 020710 296 KVGWKIRKR 304 (322)
Q Consensus 296 ~aGf~vv~~ 304 (322)
++||++++.
T Consensus 328 ~aGf~~~~~ 336 (352)
T 3mcz_A 328 DAGLAVGER 336 (352)
T ss_dssp HTTCEEEEE
T ss_pred HCCCceeee
Confidence 999999984
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.67 E-value=5.1e-16 Score=141.29 Aligned_cols=145 Identities=12% Similarity=0.086 Sum_probs=107.9
Q ss_pred CeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-CCCccEEEEc
Q 020710 150 IAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-DGKYDTVVCL 226 (322)
Q Consensus 150 ~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~fD~V~~~ 226 (322)
.+|||||||+|..+..+++. +.+++++|+ +.+++.+++++...+...++ +|+.+|+.+. +++||+|++.
T Consensus 169 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v-------~~~~~d~~~~~~~~~D~v~~~ 240 (334)
T 2ip2_A 169 RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLAGERV-------SLVGGDMLQEVPSNGDIYLLS 240 (334)
T ss_dssp CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHHTTSE-------EEEESCTTTCCCSSCSEEEEE
T ss_pred CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCCCCcE-------EEecCCCCCCCCCCCCEEEEc
Confidence 89999999999999999987 678999999 99999999998877765544 8999998654 5679999999
Q ss_pred ccccccCcchHHHHHHHHHhccCCeEEEE-EC---CC--hhhHHHHHHhhccCCCCCCccccccCCHHHHHHHHHHCCCE
Q 020710 227 DVLIHYPQSKADGMIAHLASLAEKRLILS-FA---PK--TFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQKVGWK 300 (322)
Q Consensus 227 ~~l~~~~~~~~~~~l~~l~~~~~~~~il~-~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~ 300 (322)
.++||++++....+++++++.+++|+.+. .. +. .........+.... ......++.+++.++++++||+
T Consensus 241 ~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~t~~e~~~ll~~aGf~ 315 (334)
T 2ip2_A 241 RIIGDLDEAASLRLLGNCREAMAGDGRVVVIERTISASEPSPMSVLWDVHLFM-----ACAGRHRTTEEVVDLLGRGGFA 315 (334)
T ss_dssp SCGGGCCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSSCCHHHHHHHHHHHH-----HHSCCCCBHHHHHHHHHHTTEE
T ss_pred hhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhHHhhhHhHh-----hCCCcCCCHHHHHHHHHHCCCc
Confidence 99999998777899999999876655443 31 11 11111101110000 0012235799999999999999
Q ss_pred EEEEeee
Q 020710 301 IRKRGLI 307 (322)
Q Consensus 301 vv~~~~~ 307 (322)
+++....
T Consensus 316 ~~~~~~~ 322 (334)
T 2ip2_A 316 VERIVDL 322 (334)
T ss_dssp EEEEEEE
T ss_pred eeEEEEC
Confidence 9887654
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.2e-15 Score=129.04 Aligned_cols=138 Identities=26% Similarity=0.287 Sum_probs=107.0
Q ss_pred HHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCC-EEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEc
Q 020710 133 TVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGA-IVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVK 211 (322)
Q Consensus 133 ~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (322)
....+++.+... ..++.+|||+|||+|.++..+++.+. +|+|+|+|+.|++.+++++...+..+ +++.++
T Consensus 46 ~~~~~~~~l~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~--------v~~~~~ 116 (205)
T 3grz_A 46 TTQLAMLGIERA-MVKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALNGIYD--------IALQKT 116 (205)
T ss_dssp HHHHHHHHHHHH-CSSCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCC--------CEEEES
T ss_pred cHHHHHHHHHHh-ccCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCc--------eEEEec
Confidence 334555555532 23578999999999999999998865 89999999999999999998776543 389999
Q ss_pred ccccC-CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCCCCCccccccCCHHHH
Q 020710 212 DLESL-DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADV 290 (322)
Q Consensus 212 d~~~~-~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (322)
|+.+. +++||+|++...+++ +..+++++.++++++|++.+..... .+.+++
T Consensus 117 d~~~~~~~~fD~i~~~~~~~~-----~~~~l~~~~~~L~~gG~l~~~~~~~-----------------------~~~~~~ 168 (205)
T 3grz_A 117 SLLADVDGKFDLIVANILAEI-----LLDLIPQLDSHLNEDGQVIFSGIDY-----------------------LQLPKI 168 (205)
T ss_dssp STTTTCCSCEEEEEEESCHHH-----HHHHGGGSGGGEEEEEEEEEEEEEG-----------------------GGHHHH
T ss_pred cccccCCCCceEEEECCcHHH-----HHHHHHHHHHhcCCCCEEEEEecCc-----------------------ccHHHH
Confidence 98765 789999999887765 3588889999888777766521110 136789
Q ss_pred HHHHHHCCCEEEEEeee
Q 020710 291 ERALQKVGWKIRKRGLI 307 (322)
Q Consensus 291 ~~~l~~aGf~vv~~~~~ 307 (322)
.++++++||++++....
T Consensus 169 ~~~~~~~Gf~~~~~~~~ 185 (205)
T 3grz_A 169 EQALAENSFQIDLKMRA 185 (205)
T ss_dssp HHHHHHTTEEEEEEEEE
T ss_pred HHHHHHcCCceEEeecc
Confidence 99999999999876543
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.65 E-value=9.9e-16 Score=135.62 Aligned_cols=165 Identities=12% Similarity=0.152 Sum_probs=109.8
Q ss_pred HHHHHHHHhhhcCCCCCCeEEEECCCc---ccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCc
Q 020710 133 TVENTMQMLNDEGSLKGIAVCDAGCGT---GSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPK 207 (322)
Q Consensus 133 ~~~~~~~~l~~~~~~~~~~VLDvGcG~---G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~ 207 (322)
.+.++++.+... ....+|||||||+ |.++..+.+. +.+|+++|+|+.|++.|++++... .+ +.
T Consensus 64 ~~~~~~~~l~~~--~~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~---~~-------v~ 131 (274)
T 2qe6_A 64 VLVRGVRFLAGE--AGISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKD---PN-------TA 131 (274)
T ss_dssp HHHHHHHHHHTT--TCCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTC---TT-------EE
T ss_pred HHHHHHHHHhhc--cCCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCC---CC-------eE
Confidence 445666666522 1347999999999 9887766654 689999999999999999987432 11 28
Q ss_pred eEEcccccC-------------C-CCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEECCChhh-HHHHHHhhcc
Q 020710 208 FEVKDLESL-------------D-GKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFY-YDLLKRVGEL 272 (322)
Q Consensus 208 ~~~~d~~~~-------------~-~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~~~-~~~~~~~~~~ 272 (322)
|+++|+.+. + .+||+|++..++||++++....+++++++.+++|+.+.+.....- ......+...
T Consensus 132 ~~~~D~~~~~~~~~~~~~~~~~d~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~~~~~~~~~~~~~~ 211 (274)
T 2qe6_A 132 VFTADVRDPEYILNHPDVRRMIDFSRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLVDTGLPAQQKLARI 211 (274)
T ss_dssp EEECCTTCHHHHHHSHHHHHHCCTTSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEBCSSCHHHHHHHHH
T ss_pred EEEeeCCCchhhhccchhhccCCCCCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEecCcchHHHHHHHHH
Confidence 999998642 2 589999999999999987778999999998766665543211100 0111111111
Q ss_pred CCCCCCccccccCCHHHHHHHHHHCCCEEEEEeeeecceeh
Q 020710 273 FPGPSKATRAYLHAEADVERALQKVGWKIRKRGLITTQFYF 313 (322)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~l~~aGf~vv~~~~~~~~~~f 313 (322)
+.. .....++++.++++++| .||++++........|+
T Consensus 212 ~~~--~~~~~~~~s~~ei~~~l--~G~~l~~~g~~~~~~w~ 248 (274)
T 2qe6_A 212 TRE--NLGEGWARTPEEIERQF--GDFELVEPGVVYTALWR 248 (274)
T ss_dssp HHH--HHSCCCCBCHHHHHHTT--TTCEECTTCSEEGGGSS
T ss_pred HHh--cCCCCccCCHHHHHHHh--CCCeEccCcEecccccc
Confidence 100 00012356899999999 59998875444433333
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=99.63 E-value=4.6e-16 Score=142.54 Aligned_cols=144 Identities=15% Similarity=0.127 Sum_probs=99.9
Q ss_pred CCCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEccccc-CCCCccEE
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLES-LDGKYDTV 223 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~fD~V 223 (322)
.++.+|||||||+|.++..+++. +.+++++|+ +.++. +++....+..+++ +|+.+|+.+ .+ +||+|
T Consensus 183 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~--~~~~~~~~~~~~v-------~~~~~d~~~~~p-~~D~v 251 (348)
T 3lst_A 183 PATGTVADVGGGRGGFLLTVLREHPGLQGVLLDR-AEVVA--RHRLDAPDVAGRW-------KVVEGDFLREVP-HADVH 251 (348)
T ss_dssp CSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEEC-HHHHT--TCCCCCGGGTTSE-------EEEECCTTTCCC-CCSEE
T ss_pred cCCceEEEECCccCHHHHHHHHHCCCCEEEEecC-HHHhh--cccccccCCCCCe-------EEEecCCCCCCC-CCcEE
Confidence 45789999999999999999986 567999999 44554 3333333443333 899999954 35 99999
Q ss_pred EEcccccccCcchHHHHHHHHHhccCCeEEEEE-C---CCh--hhHHHHHHhhccCCCCCCccccccCCHHHHHHHHHHC
Q 020710 224 VCLDVLIHYPQSKADGMIAHLASLAEKRLILSF-A---PKT--FYYDLLKRVGELFPGPSKATRAYLHAEADVERALQKV 297 (322)
Q Consensus 224 ~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~-~---~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a 297 (322)
++..++||+++++...+++++++++++|+.+.+ . +.. ........+..... .....++.++++++++++
T Consensus 252 ~~~~vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~d~~~~~~-----~~~~~~t~~e~~~ll~~a 326 (348)
T 3lst_A 252 VLKRILHNWGDEDSVRILTNCRRVMPAHGRVLVIDAVVPEGNDAHQSKEMDFMMLAA-----RTGQERTAAELEPLFTAA 326 (348)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEECCBCSSSSCCHHHHHHHHHHHT-----TSCCCCBHHHHHHHHHHT
T ss_pred EEehhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhhhcChhhhhc-----CCCcCCCHHHHHHHHHHC
Confidence 999999999998778999999998766654433 1 111 11111111110100 112345799999999999
Q ss_pred CCEEEEEee
Q 020710 298 GWKIRKRGL 306 (322)
Q Consensus 298 Gf~vv~~~~ 306 (322)
||++++...
T Consensus 327 Gf~~~~~~~ 335 (348)
T 3lst_A 327 GLRLDRVVG 335 (348)
T ss_dssp TEEEEEEEE
T ss_pred CCceEEEEE
Confidence 999998765
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=4.6e-15 Score=133.77 Aligned_cols=170 Identities=16% Similarity=0.180 Sum_probs=111.4
Q ss_pred HHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc-CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEc
Q 020710 133 TVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ-GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVK 211 (322)
Q Consensus 133 ~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (322)
++..+++.+... ..++.+|||||||+|.++..+++. +.+|+|+|+|+.|++.++++....+.... .....++.|+++
T Consensus 20 l~~~~~~~l~~~-~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~-~~~~~~~~~~~~ 97 (313)
T 3bgv_A 20 LIGEFLEKVRQK-KKRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRD-SEYIFSAEFITA 97 (313)
T ss_dssp HHHHHHHHHHHT-C--CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSSC-C-CCCEEEEEEC
T ss_pred HHHHHHHHhhhc-cCCCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhccc-ccccceEEEEEe
Confidence 335555555442 124679999999999999999976 66899999999999999998875421000 000011389999
Q ss_pred ccccC---------CCCccEEEEccccccc-Cc-chHHHHHHHHHhccCCeEEEEECCChhhHHHHHHhh--------cc
Q 020710 212 DLESL---------DGKYDTVVCLDVLIHY-PQ-SKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVG--------EL 272 (322)
Q Consensus 212 d~~~~---------~~~fD~V~~~~~l~~~-~~-~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~--------~~ 272 (322)
|+.++ +++||+|+|..++||+ .+ +....+++++++++++||++.+..... ..+...+. ..
T Consensus 98 D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~-~~l~~~~~~~~~~~~~~~ 176 (313)
T 3bgv_A 98 DSSKELLIDKFRDPQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPNS-FELIRRLEASETESFGNE 176 (313)
T ss_dssp CTTTSCSTTTCSSTTCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEECH-HHHHHHHTTSSSSEEECS
T ss_pred cccccchhhhcccCCCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCCh-HHHHHHHHhhccCccCCe
Confidence 98764 2489999999999998 33 345799999999887777665432211 11111111 00
Q ss_pred -----CCCC----------------CCccccccCCHHHHHHHHHHCCCEEEEEe
Q 020710 273 -----FPGP----------------SKATRAYLHAEADVERALQKVGWKIRKRG 305 (322)
Q Consensus 273 -----~~~~----------------~~~~~~~~~~~~~~~~~l~~aGf~vv~~~ 305 (322)
+... ......+..+.+++.+++++.||+++...
T Consensus 177 ~~~~~f~~~~~~~~~~~~~~f~l~~~~~~~~~~~~~~~~~~l~~~~G~~~v~~~ 230 (313)
T 3bgv_A 177 IYTVKFQKKGDYPLFGCKYDFNLEGVVDVPEFLVYFPLLNEMAKKYNMKLVYKK 230 (313)
T ss_dssp SEEEEESCSSCCCSSCCEEEEEEC---CCEEECCCHHHHHHHGGGGTEEEEEEE
T ss_pred eEEEEeCCCCCCCCccceEEEEECCcccCcceEEcHHHHHHHHHHcCcEEEEec
Confidence 1100 00112334678999999999999999864
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=9.8e-16 Score=132.54 Aligned_cols=135 Identities=16% Similarity=0.109 Sum_probs=94.4
Q ss_pred CCCeEEEECCCcccchHHHHhcCC-EEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-----CCCcc
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQGA-IVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-----DGKYD 221 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-----~~~fD 221 (322)
++.+|||||||+|.++..+++.+. +|+|+|+|+.|++.|+++....+.. +.++++|+.++ +++||
T Consensus 60 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~---------v~~~~~d~~~~~~~~~~~~fD 130 (236)
T 1zx0_A 60 KGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHK---------VIPLKGLWEDVAPTLPDGHFD 130 (236)
T ss_dssp TCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCSSE---------EEEEESCHHHHGGGSCTTCEE
T ss_pred CCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHHHHHhcCCC---------eEEEecCHHHhhcccCCCceE
Confidence 578999999999999999988755 8999999999999999988665432 28899997653 58999
Q ss_pred EEEE-cccccccC---cchHHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCCCCCccccccCCHHHHHHHHHHC
Q 020710 222 TVVC-LDVLIHYP---QSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQKV 297 (322)
Q Consensus 222 ~V~~-~~~l~~~~---~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a 297 (322)
+|++ ...+ +.+ ......+++++++++++||++.+....... . .+......... ...+.....+.++
T Consensus 131 ~V~~d~~~~-~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~---~----~~~~~~~~~~~--~~~~~~~~~l~~a 200 (236)
T 1zx0_A 131 GILYDTYPL-SEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLTSWG---E----LMKSKYSDITI--MFEETQVPALLEA 200 (236)
T ss_dssp EEEECCCCC-BGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHHHHH---H----HTTTTCSCHHH--HHHHHTHHHHHHT
T ss_pred EEEECCccc-chhhhhhhhHHHHHHHHHHhcCCCeEEEEEecCcHH---H----hhchhhhhhhh--hccHHHHHHHHHC
Confidence 9999 5554 322 223457899999999888888765433111 1 11111111111 1134556788999
Q ss_pred CCEE
Q 020710 298 GWKI 301 (322)
Q Consensus 298 Gf~v 301 (322)
||++
T Consensus 201 GF~~ 204 (236)
T 1zx0_A 201 GFRR 204 (236)
T ss_dssp TCCG
T ss_pred CCCC
Confidence 9984
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.62 E-value=6.7e-15 Score=120.92 Aligned_cols=130 Identities=18% Similarity=0.193 Sum_probs=93.4
Q ss_pred HHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccc
Q 020710 135 ENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLE 214 (322)
Q Consensus 135 ~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 214 (322)
+.+++.+... ..++.+|||+|||+|.++..+++.+ +|+|+|+|+.|++. ..+ ++++++|+.
T Consensus 11 ~~l~~~l~~~-~~~~~~vLD~GcG~G~~~~~l~~~~-~v~gvD~s~~~~~~----------~~~-------~~~~~~d~~ 71 (170)
T 3q87_B 11 YTLMDALERE-GLEMKIVLDLGTSTGVITEQLRKRN-TVVSTDLNIRALES----------HRG-------GNLVRADLL 71 (170)
T ss_dssp HHHHHHHHHH-TCCSCEEEEETCTTCHHHHHHTTTS-EEEEEESCHHHHHT----------CSS-------SCEEECSTT
T ss_pred HHHHHHHHhh-cCCCCeEEEeccCccHHHHHHHhcC-cEEEEECCHHHHhc----------ccC-------CeEEECChh
Confidence 3444555441 1246799999999999999999999 99999999999987 112 389999987
Q ss_pred cC--CCCccEEEEcccccccCcc-------hHHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCCCCCccccccC
Q 020710 215 SL--DGKYDTVVCLDVLIHYPQS-------KADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLH 285 (322)
Q Consensus 215 ~~--~~~fD~V~~~~~l~~~~~~-------~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (322)
+. +++||+|+++..+++.++. ....+++++.+.+++|.++..... ..
T Consensus 72 ~~~~~~~fD~i~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~lpgG~l~~~~~~------------------------~~ 127 (170)
T 3q87_B 72 CSINQESVDVVVFNPPYVPDTDDPIIGGGYLGREVIDRFVDAVTVGMLYLLVIE------------------------AN 127 (170)
T ss_dssp TTBCGGGCSEEEECCCCBTTCCCTTTBCCGGGCHHHHHHHHHCCSSEEEEEEEG------------------------GG
T ss_pred hhcccCCCCEEEECCCCccCCccccccCCcchHHHHHHHHhhCCCCEEEEEEec------------------------CC
Confidence 65 5899999999998876554 223566666665544444333211 12
Q ss_pred CHHHHHHHHHHCCCEEEEEeee
Q 020710 286 AEADVERALQKVGWKIRKRGLI 307 (322)
Q Consensus 286 ~~~~~~~~l~~aGf~vv~~~~~ 307 (322)
..+++.++++++||+++.....
T Consensus 128 ~~~~l~~~l~~~gf~~~~~~~~ 149 (170)
T 3q87_B 128 RPKEVLARLEERGYGTRILKVR 149 (170)
T ss_dssp CHHHHHHHHHHTTCEEEEEEEE
T ss_pred CHHHHHHHHHHCCCcEEEEEee
Confidence 4678999999999998775544
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=3.1e-15 Score=127.30 Aligned_cols=126 Identities=21% Similarity=0.324 Sum_probs=95.8
Q ss_pred HHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcc
Q 020710 133 TVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKD 212 (322)
Q Consensus 133 ~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d 212 (322)
.++.+++.+... .++.+|||||||+|.++..+ +.+|+|+|+|+. + +.+.++|
T Consensus 54 ~~~~~~~~l~~~--~~~~~vLDiG~G~G~~~~~l---~~~v~~~D~s~~----------------~-------~~~~~~d 105 (215)
T 2zfu_A 54 PVDRIARDLRQR--PASLVVADFGCGDCRLASSI---RNPVHCFDLASL----------------D-------PRVTVCD 105 (215)
T ss_dssp HHHHHHHHHHTS--CTTSCEEEETCTTCHHHHHC---CSCEEEEESSCS----------------S-------TTEEESC
T ss_pred HHHHHHHHHhcc--CCCCeEEEECCcCCHHHHHh---hccEEEEeCCCC----------------C-------ceEEEec
Confidence 345666776643 35689999999999998877 478999999987 1 1889999
Q ss_pred cccC---CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCCCCCccccccCCHHH
Q 020710 213 LESL---DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEAD 289 (322)
Q Consensus 213 ~~~~---~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (322)
+.++ +++||+|++..++|+ ++ ...+++++.+++++||.+.+..... .+.+.++
T Consensus 106 ~~~~~~~~~~fD~v~~~~~l~~-~~--~~~~l~~~~~~L~~gG~l~i~~~~~---------------------~~~~~~~ 161 (215)
T 2zfu_A 106 MAQVPLEDESVDVAVFCLSLMG-TN--IRDFLEEANRVLKPGGLLKVAEVSS---------------------RFEDVRT 161 (215)
T ss_dssp TTSCSCCTTCEEEEEEESCCCS-SC--HHHHHHHHHHHEEEEEEEEEEECGG---------------------GCSCHHH
T ss_pred cccCCCCCCCEeEEEEehhccc-cC--HHHHHHHHHHhCCCCeEEEEEEcCC---------------------CCCCHHH
Confidence 8775 578999999999964 55 5699999999887777665532110 0126889
Q ss_pred HHHHHHHCCCEEEEEeeeecc
Q 020710 290 VERALQKVGWKIRKRGLITTQ 310 (322)
Q Consensus 290 ~~~~l~~aGf~vv~~~~~~~~ 310 (322)
+.++++++||++++.......
T Consensus 162 ~~~~l~~~Gf~~~~~~~~~~~ 182 (215)
T 2zfu_A 162 FLRAVTKLGFKIVSKDLTNSH 182 (215)
T ss_dssp HHHHHHHTTEEEEEEECCSTT
T ss_pred HHHHHHHCCCEEEEEecCCCe
Confidence 999999999999987655433
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.3e-14 Score=122.74 Aligned_cols=133 Identities=13% Similarity=0.072 Sum_probs=101.2
Q ss_pred HHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccc
Q 020710 135 ENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLE 214 (322)
Q Consensus 135 ~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 214 (322)
..+++.+.. .++.+|||+|||+|.++..+++.+.+|+|+|+|+.|++.|++++...+..+++ +++++|+.
T Consensus 45 ~~~l~~l~~---~~~~~vLDlGcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v-------~~~~~d~~ 114 (204)
T 3njr_A 45 ALTLAALAP---RRGELLWDIGGGSGSVSVEWCLAGGRAITIEPRADRIENIQKNIDTYGLSPRM-------RAVQGTAP 114 (204)
T ss_dssp HHHHHHHCC---CTTCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCTTTE-------EEEESCTT
T ss_pred HHHHHhcCC---CCCCEEEEecCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCE-------EEEeCchh
Confidence 344455543 36789999999999999999999999999999999999999999887765333 89999988
Q ss_pred cC---CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCCCCCccccccCCHHHHH
Q 020710 215 SL---DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADVE 291 (322)
Q Consensus 215 ~~---~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (322)
+. .+.||+|++..++ + .. +++++.+++++++.+.+..... .+..++.
T Consensus 115 ~~~~~~~~~D~v~~~~~~----~--~~-~l~~~~~~LkpgG~lv~~~~~~-----------------------~~~~~~~ 164 (204)
T 3njr_A 115 AALADLPLPEAVFIGGGG----S--QA-LYDRLWEWLAPGTRIVANAVTL-----------------------ESETLLT 164 (204)
T ss_dssp GGGTTSCCCSEEEECSCC----C--HH-HHHHHHHHSCTTCEEEEEECSH-----------------------HHHHHHH
T ss_pred hhcccCCCCCEEEECCcc----c--HH-HHHHHHHhcCCCcEEEEEecCc-----------------------ccHHHHH
Confidence 73 4589999987754 2 44 8899988876666555422111 1246788
Q ss_pred HHHHHCCCEEEEEeee
Q 020710 292 RALQKVGWKIRKRGLI 307 (322)
Q Consensus 292 ~~l~~aGf~vv~~~~~ 307 (322)
+++++.||++......
T Consensus 165 ~~l~~~g~~i~~i~~~ 180 (204)
T 3njr_A 165 QLHARHGGQLLRIDIA 180 (204)
T ss_dssp HHHHHHCSEEEEEEEE
T ss_pred HHHHhCCCcEEEEEee
Confidence 8899999998886544
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=4.8e-15 Score=123.08 Aligned_cols=103 Identities=16% Similarity=0.074 Sum_probs=78.9
Q ss_pred CCCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC----CCCcc
Q 020710 146 SLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL----DGKYD 221 (322)
Q Consensus 146 ~~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~~fD 221 (322)
..++.+|||+|||+|.++..+++.+.+|+|+|+|+.|++.|++++...+.. + ++|++.|...+ +++||
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~la~~~~~v~~vD~s~~~l~~a~~~~~~~~~~-~-------v~~~~~~~~~l~~~~~~~fD 91 (185)
T 3mti_A 20 LDDESIVVDATMGNGNDTAFLAGLSKKVYAFDVQEQALGKTSQRLSDLGIE-N-------TELILDGHENLDHYVREPIR 91 (185)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHHTCC-C-------EEEEESCGGGGGGTCCSCEE
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCC-c-------EEEEeCcHHHHHhhccCCcC
Confidence 346789999999999999999999999999999999999999999877652 2 38888777663 67899
Q ss_pred EEEEccccccc-------CcchHHHHHHHHHhccCCeEEEEE
Q 020710 222 TVVCLDVLIHY-------PQSKADGMIAHLASLAEKRLILSF 256 (322)
Q Consensus 222 ~V~~~~~l~~~-------~~~~~~~~l~~l~~~~~~~~il~~ 256 (322)
+|+++....+. .......+++++.+++++||.+.+
T Consensus 92 ~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 133 (185)
T 3mti_A 92 AAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAI 133 (185)
T ss_dssp EEEEEEC-----------CHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred EEEEeCCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEE
Confidence 99987322221 112345788999888877776544
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=5.6e-15 Score=135.55 Aligned_cols=147 Identities=17% Similarity=0.155 Sum_probs=105.3
Q ss_pred CCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-CCCccEEE
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-DGKYDTVV 224 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~fD~V~ 224 (322)
...+|||||||+|.++..++++ +.+++..|. |.+++.++++....+ ..++ +|+.+|+.+. ...+|+|+
T Consensus 179 ~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~~-~~rv-------~~~~gD~~~~~~~~~D~~~ 249 (353)
T 4a6d_A 179 VFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQE-EEQI-------DFQEGDFFKDPLPEADLYI 249 (353)
T ss_dssp GCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC---CCSE-------EEEESCTTTSCCCCCSEEE
T ss_pred cCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhcc-cCce-------eeecCccccCCCCCceEEE
Confidence 5679999999999999999988 667888887 889999998875443 3344 9999998754 56789999
Q ss_pred EcccccccCcchHHHHHHHHHhccCCeE-EEEEC---CCh---hhHHHHHHhhccCCCCCCccccccCCHHHHHHHHHHC
Q 020710 225 CLDVLIHYPQSKADGMIAHLASLAEKRL-ILSFA---PKT---FYYDLLKRVGELFPGPSKATRAYLHAEADVERALQKV 297 (322)
Q Consensus 225 ~~~~l~~~~~~~~~~~l~~l~~~~~~~~-il~~~---~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a 297 (322)
+..+||++++++...+|+++++.+++++ ++++. +.. ........+.-+.. ..+..++.+||+++++++
T Consensus 250 ~~~vlh~~~d~~~~~iL~~~~~al~pgg~lli~e~~~~~~~~~~~~~~~~dl~ml~~-----~~g~ert~~e~~~ll~~A 324 (353)
T 4a6d_A 250 LARVLHDWADGKCSHLLERIYHTCKPGGGILVIESLLDEDRRGPLLTQLYSLNMLVQ-----TEGQERTPTHYHMLLSSA 324 (353)
T ss_dssp EESSGGGSCHHHHHHHHHHHHHHCCTTCEEEEEECCCCTTSCCCHHHHHHHHHHHHS-----SSCCCCCHHHHHHHHHHH
T ss_pred eeeecccCCHHHHHHHHHHHHhhCCCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHh-----CCCcCCCHHHHHHHHHHC
Confidence 9999999999888899999999765544 44332 111 11111111111100 012235899999999999
Q ss_pred CCEEEEEeeee
Q 020710 298 GWKIRKRGLIT 308 (322)
Q Consensus 298 Gf~vv~~~~~~ 308 (322)
||+++++..+.
T Consensus 325 Gf~~v~v~~~~ 335 (353)
T 4a6d_A 325 GFRDFQFKKTG 335 (353)
T ss_dssp TCEEEEEECCS
T ss_pred CCceEEEEEcC
Confidence 99999876553
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.60 E-value=6.6e-14 Score=118.28 Aligned_cols=140 Identities=16% Similarity=0.140 Sum_probs=103.0
Q ss_pred HHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCC-EEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEc
Q 020710 133 TVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGA-IVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVK 211 (322)
Q Consensus 133 ~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (322)
....++..+......++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.++++....+.. ++++++
T Consensus 34 ~~~~l~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~---------~~~~~~ 104 (207)
T 1wy7_A 34 AASELLWLAYSLGDIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKGK---------FKVFIG 104 (207)
T ss_dssp HHHHHHHHHHHTTSSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTTS---------EEEEES
T ss_pred HHHHHHHHHHHcCCCCcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCC---------EEEEEC
Confidence 344555555433334678999999999999999999865 7999999999999999998766542 289999
Q ss_pred ccccCCCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCCCCCccccccCCHHHHH
Q 020710 212 DLESLDGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADVE 291 (322)
Q Consensus 212 d~~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (322)
|+.+++++||+|+++..+++........+++.+.+++ ++.++.+.+... +.+.+.
T Consensus 105 d~~~~~~~~D~v~~~~p~~~~~~~~~~~~l~~~~~~l-~~~~~~~~~~~~------------------------~~~~~~ 159 (207)
T 1wy7_A 105 DVSEFNSRVDIVIMNPPFGSQRKHADRPFLLKAFEIS-DVVYSIHLAKPE------------------------VRRFIE 159 (207)
T ss_dssp CGGGCCCCCSEEEECCCCSSSSTTTTHHHHHHHHHHC-SEEEEEEECCHH------------------------HHHHHH
T ss_pred chHHcCCCCCEEEEcCCCccccCCchHHHHHHHHHhc-CcEEEEEeCCcC------------------------CHHHHH
Confidence 9998888999999998887766443457888888877 444444321110 134567
Q ss_pred HHHHHCCCEEEEEee
Q 020710 292 RALQKVGWKIRKRGL 306 (322)
Q Consensus 292 ~~l~~aGf~vv~~~~ 306 (322)
+.+.+.||++.....
T Consensus 160 ~~l~~~g~~~~~~~~ 174 (207)
T 1wy7_A 160 KFSWEHGFVVTHRLT 174 (207)
T ss_dssp HHHHHTTEEEEEEEE
T ss_pred HHHHHCCCeEEEEEE
Confidence 788899998765443
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.60 E-value=6.1e-15 Score=123.06 Aligned_cols=121 Identities=17% Similarity=0.216 Sum_probs=92.6
Q ss_pred hcCchhHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCC-EEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCC
Q 020710 127 RLGHSKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGA-IVSASDISAAMVAEARKKAEEELLADNGGEAPVM 205 (322)
Q Consensus 127 ~~~~~~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~ 205 (322)
++......+.+++.+......++.+|||+|||+|.++..+++.+. +|+|+|+|+.|++.+++++...+.. +
T Consensus 23 rp~~~~~~~~l~~~l~~~~~~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~------- 94 (189)
T 3p9n_A 23 RPTTDRVRESLFNIVTARRDLTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEALGLS-G------- 94 (189)
T ss_dssp ---CHHHHHHHHHHHHHHSCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHHHTCS-C-------
T ss_pred ccCcHHHHHHHHHHHHhccCCCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCC-c-------
Confidence 334455566777777653224678999999999999998888865 7999999999999999999877652 2
Q ss_pred CceEEcccccC-----CCCccEEEEcccccccCcchHHHHHHHHHh--ccCCeEEEEE
Q 020710 206 PKFEVKDLESL-----DGKYDTVVCLDVLIHYPQSKADGMIAHLAS--LAEKRLILSF 256 (322)
Q Consensus 206 ~~~~~~d~~~~-----~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~--~~~~~~il~~ 256 (322)
++++++|+.+. +++||+|++...+++. .+....+++.+.+ ++++++++.+
T Consensus 95 v~~~~~d~~~~~~~~~~~~fD~i~~~~p~~~~-~~~~~~~l~~~~~~~~L~pgG~l~~ 151 (189)
T 3p9n_A 95 ATLRRGAVAAVVAAGTTSPVDLVLADPPYNVD-SADVDAILAALGTNGWTREGTVAVV 151 (189)
T ss_dssp EEEEESCHHHHHHHCCSSCCSEEEECCCTTSC-HHHHHHHHHHHHHSSSCCTTCEEEE
T ss_pred eEEEEccHHHHHhhccCCCccEEEECCCCCcc-hhhHHHHHHHHHhcCccCCCeEEEE
Confidence 38999998764 6899999999887664 2336789999988 7777666655
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=5.1e-15 Score=131.14 Aligned_cols=142 Identities=18% Similarity=0.174 Sum_probs=107.9
Q ss_pred hhcCchhHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCC
Q 020710 126 IRLGHSKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAP 203 (322)
Q Consensus 126 ~~~~~~~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~ 203 (322)
.+...+.+++.+++.+. .++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.+++++...+..+
T Consensus 91 pr~~te~l~~~~l~~~~----~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~------ 160 (276)
T 2b3t_A 91 PRPDTECLVEQALARLP----EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKN------ 160 (276)
T ss_dssp CCTTHHHHHHHHHHHSC----SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCS------
T ss_pred cCchHHHHHHHHHHhcc----cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCc------
Confidence 34445566666766664 24679999999999999999976 6799999999999999999988776532
Q ss_pred CCCceEEcccccC--CCCccEEEEcc-------------cccccCc----------chHHHHHHHHHhccCCeEEEEECC
Q 020710 204 VMPKFEVKDLESL--DGKYDTVVCLD-------------VLIHYPQ----------SKADGMIAHLASLAEKRLILSFAP 258 (322)
Q Consensus 204 ~~~~~~~~d~~~~--~~~fD~V~~~~-------------~l~~~~~----------~~~~~~l~~l~~~~~~~~il~~~~ 258 (322)
+.|+++|+.+. +++||+|+++. +++|.|. .....+++.+.+++++||++.+..
T Consensus 161 --v~~~~~d~~~~~~~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~ 238 (276)
T 2b3t_A 161 --IHILQSDWFSALAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEH 238 (276)
T ss_dssp --EEEECCSTTGGGTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred --eEEEEcchhhhcccCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 38999998764 67899999983 4444442 224678899999888888776632
Q ss_pred ChhhHHHHHHhhccCCCCCCccccccCCHHHHHHHHHHCCCEEEE
Q 020710 259 KTFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQKVGWKIRK 303 (322)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~vv~ 303 (322)
. ....+++.++++++||+.++
T Consensus 239 ~------------------------~~~~~~~~~~l~~~Gf~~v~ 259 (276)
T 2b3t_A 239 G------------------------WQQGEAVRQAFILAGYHDVE 259 (276)
T ss_dssp C------------------------SSCHHHHHHHHHHTTCTTCC
T ss_pred C------------------------chHHHHHHHHHHHCCCcEEE
Confidence 1 12467899999999998654
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.59 E-value=3e-14 Score=120.23 Aligned_cols=128 Identities=13% Similarity=0.068 Sum_probs=98.4
Q ss_pred HHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcC--CEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcc
Q 020710 135 ENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQG--AIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKD 212 (322)
Q Consensus 135 ~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d 212 (322)
..+++.+.. .++.+|||+|||+|.++..+++.+ .+|+++|+|+.+++.++++....+.. + ++++++|
T Consensus 30 ~~~l~~l~~---~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~-------v~~~~~d 98 (204)
T 3e05_A 30 AVTLSKLRL---QDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVAR-N-------VTLVEAF 98 (204)
T ss_dssp HHHHHHTTC---CTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCT-T-------EEEEECC
T ss_pred HHHHHHcCC---CCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-c-------EEEEeCC
Confidence 444555543 367899999999999999999986 79999999999999999998877652 2 3899999
Q ss_pred cccC---CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCCCCCccccccCCHHH
Q 020710 213 LESL---DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEAD 289 (322)
Q Consensus 213 ~~~~---~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (322)
+.+. .++||+|++..+++ + ...+++++.++++++|.+.+..... .+.++
T Consensus 99 ~~~~~~~~~~~D~i~~~~~~~---~--~~~~l~~~~~~LkpgG~l~~~~~~~-----------------------~~~~~ 150 (204)
T 3e05_A 99 APEGLDDLPDPDRVFIGGSGG---M--LEEIIDAVDRRLKSEGVIVLNAVTL-----------------------DTLTK 150 (204)
T ss_dssp TTTTCTTSCCCSEEEESCCTT---C--HHHHHHHHHHHCCTTCEEEEEECBH-----------------------HHHHH
T ss_pred hhhhhhcCCCCCEEEECCCCc---C--HHHHHHHHHHhcCCCeEEEEEeccc-----------------------ccHHH
Confidence 8654 37899999988774 3 5689999999877766665432111 13568
Q ss_pred HHHHHHHCCCEE
Q 020710 290 VERALQKVGWKI 301 (322)
Q Consensus 290 ~~~~l~~aGf~v 301 (322)
+.++++++||.+
T Consensus 151 ~~~~l~~~g~~~ 162 (204)
T 3e05_A 151 AVEFLEDHGYMV 162 (204)
T ss_dssp HHHHHHHTTCEE
T ss_pred HHHHHHHCCCce
Confidence 889999999943
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.1e-15 Score=125.90 Aligned_cols=151 Identities=21% Similarity=0.188 Sum_probs=100.4
Q ss_pred HHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEE
Q 020710 133 TVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEV 210 (322)
Q Consensus 133 ~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~ 210 (322)
+...+..++. +..+|||+|||+|.++..++.. +.+|+++|+|+.|++.+++++...+..+ ++..
T Consensus 39 fY~~~~~~l~-----~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~---------~v~~ 104 (200)
T 3fzg_A 39 FYTYVFGNIK-----HVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTI---------KYRF 104 (200)
T ss_dssp HHHHHHHHSC-----CCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSS---------EEEE
T ss_pred HHHHHHhhcC-----CCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCc---------cEEE
Confidence 3345555552 4789999999999999999877 6799999999999999999998887764 4555
Q ss_pred cccccC--CCCccEEEEcccccccCcchHHHHHHHHHhcc-CCeEEEEECCChhhHHHHHHhhccCCCCCCccccccCCH
Q 020710 211 KDLESL--DGKYDTVVCLDVLIHYPQSKADGMIAHLASLA-EKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAE 287 (322)
Q Consensus 211 ~d~~~~--~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~-~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (322)
.|.... .++||+|+...++||+++. +..+.++.+.+ ++|++|++...... +...... ..-.
T Consensus 105 ~d~~~~~~~~~~DvVLa~k~LHlL~~~--~~al~~v~~~L~pggvfISfptksl~------------Gr~~gm~--~~Y~ 168 (200)
T 3fzg_A 105 LNKESDVYKGTYDVVFLLKMLPVLKQQ--DVNILDFLQLFHTQNFVISFPIKSLS------------GKEKGME--ENYQ 168 (200)
T ss_dssp ECCHHHHTTSEEEEEEEETCHHHHHHT--TCCHHHHHHTCEEEEEEEEEECCCCC--------------CTTCC--CCHH
T ss_pred ecccccCCCCCcChhhHhhHHHhhhhh--HHHHHHHHHHhCCCCEEEEeChHHhc------------CCCcchh--hhHH
Confidence 666443 7889999999999999442 24444666655 45556666433321 1111111 1124
Q ss_pred HHHHHHHHHCCCEEEEEeeeecceeh
Q 020710 288 ADVERALQKVGWKIRKRGLITTQFYF 313 (322)
Q Consensus 288 ~~~~~~l~~aGf~vv~~~~~~~~~~f 313 (322)
+.|++.+.+-++.+-+.+..+.-+|+
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~nEl~y~ 194 (200)
T 3fzg_A 169 LWFESFTKGWIKILDSKVIGNELVYI 194 (200)
T ss_dssp HHHHHHTTTTSCEEEEEEETTEEEEE
T ss_pred HHHHHhccCcceeeeeeeeCceEEEE
Confidence 67788775555555555544444443
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.58 E-value=7.4e-14 Score=115.11 Aligned_cols=134 Identities=15% Similarity=0.195 Sum_probs=101.2
Q ss_pred chhHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceE
Q 020710 130 HSKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFE 209 (322)
Q Consensus 130 ~~~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~ 209 (322)
.......+++.+.. .++.+|||+|||+|.++..+++.+.+|+|+|+|+.+++.+++++...+..+ +.+.
T Consensus 20 ~~~~~~~~~~~~~~---~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~--------~~~~ 88 (183)
T 2yxd_A 20 KEEIRAVSIGKLNL---NKDDVVVDVGCGSGGMTVEIAKRCKFVYAIDYLDGAIEVTKQNLAKFNIKN--------CQII 88 (183)
T ss_dssp CHHHHHHHHHHHCC---CTTCEEEEESCCCSHHHHHHHTTSSEEEEEECSHHHHHHHHHHHHHTTCCS--------EEEE
T ss_pred HHHHHHHHHHHcCC---CCCCEEEEeCCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcCCCc--------EEEE
Confidence 34445666666643 357899999999999999999988899999999999999999988766522 3889
Q ss_pred EcccccC--CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCCCCCccccccCCH
Q 020710 210 VKDLESL--DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAE 287 (322)
Q Consensus 210 ~~d~~~~--~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (322)
++|+.+. +++||+|++..+ .+ ...+++.+.++ ++|.++...+... ..
T Consensus 89 ~~d~~~~~~~~~~D~i~~~~~----~~--~~~~l~~~~~~-~gG~l~~~~~~~~------------------------~~ 137 (183)
T 2yxd_A 89 KGRAEDVLDKLEFNKAFIGGT----KN--IEKIIEILDKK-KINHIVANTIVLE------------------------NA 137 (183)
T ss_dssp ESCHHHHGGGCCCSEEEECSC----SC--HHHHHHHHHHT-TCCEEEEEESCHH------------------------HH
T ss_pred ECCccccccCCCCcEEEECCc----cc--HHHHHHHHhhC-CCCEEEEEecccc------------------------cH
Confidence 9998654 468999999887 23 56889999888 5555544432210 13
Q ss_pred HHHHHHHHHCCCEEEEEe
Q 020710 288 ADVERALQKVGWKIRKRG 305 (322)
Q Consensus 288 ~~~~~~l~~aGf~vv~~~ 305 (322)
.++.+.+++.||++....
T Consensus 138 ~~~~~~l~~~g~~~~~~~ 155 (183)
T 2yxd_A 138 AKIINEFESRGYNVDAVN 155 (183)
T ss_dssp HHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHcCCeEEEEE
Confidence 578899999999876654
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.58 E-value=2.7e-14 Score=122.68 Aligned_cols=128 Identities=13% Similarity=0.195 Sum_probs=97.8
Q ss_pred CCCCeEEEECCC-cccchHHHHhc-CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC----CCCc
Q 020710 147 LKGIAVCDAGCG-TGSLAIPLAKQ-GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL----DGKY 220 (322)
Q Consensus 147 ~~~~~VLDvGcG-~G~~~~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~~f 220 (322)
.++.+|||+||| +|.++..+++. +.+|+|+|+|+.|++.+++++...+.. ++++++|+..+ +++|
T Consensus 54 ~~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~---------v~~~~~d~~~~~~~~~~~f 124 (230)
T 3evz_A 54 RGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNSN---------VRLVKSNGGIIKGVVEGTF 124 (230)
T ss_dssp CSSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHTTCC---------CEEEECSSCSSTTTCCSCE
T ss_pred CCCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHhCCC---------cEEEeCCchhhhhcccCce
Confidence 467899999999 99999999998 899999999999999999999877652 38999996432 5899
Q ss_pred cEEEEcccccccCcch-----------------HHHHHHHHHhccCCeEEEEEC-CChhhHHHHHHhhccCCCCCCcccc
Q 020710 221 DTVVCLDVLIHYPQSK-----------------ADGMIAHLASLAEKRLILSFA-PKTFYYDLLKRVGELFPGPSKATRA 282 (322)
Q Consensus 221 D~V~~~~~l~~~~~~~-----------------~~~~l~~l~~~~~~~~il~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (322)
|+|+++..+++.++.. ...+++++.+++++||.+.+. +...
T Consensus 125 D~I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~--------------------- 183 (230)
T 3evz_A 125 DVIFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDKE--------------------- 183 (230)
T ss_dssp EEEEECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESCH---------------------
T ss_pred eEEEECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecccH---------------------
Confidence 9999987776654321 267899999988777766552 2110
Q ss_pred ccCCHHHHHHHHHHCCCEEEEEee
Q 020710 283 YLHAEADVERALQKVGWKIRKRGL 306 (322)
Q Consensus 283 ~~~~~~~~~~~l~~aGf~vv~~~~ 306 (322)
...+++.+++++.||++.....
T Consensus 184 --~~~~~~~~~l~~~g~~~~~~~~ 205 (230)
T 3evz_A 184 --KLLNVIKERGIKLGYSVKDIKF 205 (230)
T ss_dssp --HHHHHHHHHHHHTTCEEEEEEE
T ss_pred --hHHHHHHHHHHHcCCceEEEEe
Confidence 1246888999999998877644
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.4e-14 Score=122.80 Aligned_cols=110 Identities=18% Similarity=0.188 Sum_probs=86.1
Q ss_pred HHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCC-EEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccc
Q 020710 136 NTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGA-IVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLE 214 (322)
Q Consensus 136 ~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 214 (322)
.+.+.+... ..++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.++++.... . ++.+.++|+.
T Consensus 31 ~~~~~l~~~-~~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~---~-------~i~~~~~d~~ 99 (215)
T 2pxx_A 31 SFRALLEPE-LRPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAHV---P-------QLRWETMDVR 99 (215)
T ss_dssp HHHHHHGGG-CCTTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHHHHHHTTTC---T-------TCEEEECCTT
T ss_pred HHHHHHHHh-cCCCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHHHHHhcccC---C-------CcEEEEcchh
Confidence 344444433 24578999999999999999999976 8999999999999999887531 1 1389999987
Q ss_pred cC---CCCccEEEEcccccccC-------------cchHHHHHHHHHhccCCeEEEEE
Q 020710 215 SL---DGKYDTVVCLDVLIHYP-------------QSKADGMIAHLASLAEKRLILSF 256 (322)
Q Consensus 215 ~~---~~~fD~V~~~~~l~~~~-------------~~~~~~~l~~l~~~~~~~~il~~ 256 (322)
++ +++||+|++..+++|+. .+....+++++.++++++|.+.+
T Consensus 100 ~~~~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~ 157 (215)
T 2pxx_A 100 KLDFPSASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFIS 157 (215)
T ss_dssp SCCSCSSCEEEEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred cCCCCCCcccEEEECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEE
Confidence 75 57899999999998776 22357899999998877775554
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.57 E-value=6e-14 Score=118.03 Aligned_cols=101 Identities=26% Similarity=0.349 Sum_probs=77.1
Q ss_pred HHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCC-EEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEccc
Q 020710 135 ENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGA-IVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDL 213 (322)
Q Consensus 135 ~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~ 213 (322)
..++..+...+..++.+|||+|||+|.++..+++.+. +|+|+|+|+.|++.++++.. + ++++++|+
T Consensus 38 ~~l~~~~~~~~~~~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~------~-------~~~~~~d~ 104 (200)
T 1ne2_A 38 AYFLIEIYNDGNIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG------G-------VNFMVADV 104 (200)
T ss_dssp HHHHHHHHHHTSSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT------T-------SEEEECCG
T ss_pred HHHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHhcC------C-------CEEEECcH
Confidence 4444444432234678999999999999999999865 69999999999999998875 1 28999999
Q ss_pred ccCCCCccEEEEcccccccCcchHHHHHHHHHhcc
Q 020710 214 ESLDGKYDTVVCLDVLIHYPQSKADGMIAHLASLA 248 (322)
Q Consensus 214 ~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~ 248 (322)
.+++++||+|+++..++|+.+.....+++++.+++
T Consensus 105 ~~~~~~~D~v~~~~p~~~~~~~~~~~~l~~~~~~~ 139 (200)
T 1ne2_A 105 SEISGKYDTWIMNPPFGSVVKHSDRAFIDKAFETS 139 (200)
T ss_dssp GGCCCCEEEEEECCCC-------CHHHHHHHHHHE
T ss_pred HHCCCCeeEEEECCCchhccCchhHHHHHHHHHhc
Confidence 88888999999999999987633357888888877
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=2.2e-14 Score=125.57 Aligned_cols=137 Identities=20% Similarity=0.188 Sum_probs=104.8
Q ss_pred HHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcc
Q 020710 133 TVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKD 212 (322)
Q Consensus 133 ~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d 212 (322)
....+++.+... ..++.+|||+|||+|.++..+++.|.+|+|+|+|+.+++.+++++...+.. +.+.++|
T Consensus 106 tt~~~~~~l~~~-~~~~~~VLDiGcG~G~l~~~la~~g~~v~gvDi~~~~v~~a~~n~~~~~~~---------v~~~~~d 175 (254)
T 2nxc_A 106 TTRLALKALARH-LRPGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAEANAKRNGVR---------PRFLEGS 175 (254)
T ss_dssp HHHHHHHHHHHH-CCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHHTTCC---------CEEEESC
T ss_pred HHHHHHHHHHHh-cCCCCEEEEecCCCcHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHcCCc---------EEEEECC
Confidence 334455555543 346789999999999999999999889999999999999999998876543 2889999
Q ss_pred cccC--CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCCCCCccccccCCHHHH
Q 020710 213 LESL--DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADV 290 (322)
Q Consensus 213 ~~~~--~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (322)
+.+. +++||+|+++...++ +..+++.+.++++++|.+.+.... ....+++
T Consensus 176 ~~~~~~~~~fD~Vv~n~~~~~-----~~~~l~~~~~~LkpgG~lils~~~-----------------------~~~~~~v 227 (254)
T 2nxc_A 176 LEAALPFGPFDLLVANLYAEL-----HAALAPRYREALVPGGRALLTGIL-----------------------KDRAPLV 227 (254)
T ss_dssp HHHHGGGCCEEEEEEECCHHH-----HHHHHHHHHHHEEEEEEEEEEEEE-----------------------GGGHHHH
T ss_pred hhhcCcCCCCCEEEECCcHHH-----HHHHHHHHHHHcCCCCEEEEEeec-----------------------cCCHHHH
Confidence 8663 678999998755432 468889999988777766552110 0136799
Q ss_pred HHHHHHCCCEEEEEeee
Q 020710 291 ERALQKVGWKIRKRGLI 307 (322)
Q Consensus 291 ~~~l~~aGf~vv~~~~~ 307 (322)
.++++++||++++....
T Consensus 228 ~~~l~~~Gf~~~~~~~~ 244 (254)
T 2nxc_A 228 REAMAGAGFRPLEEAAE 244 (254)
T ss_dssp HHHHHHTTCEEEEEEEE
T ss_pred HHHHHHCCCEEEEEecc
Confidence 99999999999886544
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=6.3e-15 Score=136.21 Aligned_cols=135 Identities=21% Similarity=0.249 Sum_probs=100.1
Q ss_pred CCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC---CCCccEEE
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL---DGKYDTVV 224 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~fD~V~ 224 (322)
++.+|||+|||+|.++..+++.+.+|+++|+|+.|++.+++++...+... +|+++|+.+. +++||+|+
T Consensus 233 ~~~~VLDlGcG~G~~~~~la~~g~~V~gvDis~~al~~A~~n~~~~~~~v---------~~~~~D~~~~~~~~~~fD~Ii 303 (381)
T 3dmg_A 233 RGRQVLDLGAGYGALTLPLARMGAEVVGVEDDLASVLSLQKGLEANALKA---------QALHSDVDEALTEEARFDIIV 303 (381)
T ss_dssp TTCEEEEETCTTSTTHHHHHHTTCEEEEEESBHHHHHHHHHHHHHTTCCC---------EEEECSTTTTSCTTCCEEEEE
T ss_pred CCCEEEEEeeeCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCCe---------EEEEcchhhccccCCCeEEEE
Confidence 57799999999999999999999999999999999999999998776543 8999998875 37999999
Q ss_pred Ecccccc---cCcchHHHHHHHHHhccCCeEEEEEC--CChhhHHHHHHhhccCCCCCCccccccCCHHHHHHHHHHCCC
Q 020710 225 CLDVLIH---YPQSKADGMIAHLASLAEKRLILSFA--PKTFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQKVGW 299 (322)
Q Consensus 225 ~~~~l~~---~~~~~~~~~l~~l~~~~~~~~il~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf 299 (322)
|+..+++ ...+....+++++.+++++||++.+. +...+..++... +. +++.+ ++.||
T Consensus 304 ~npp~~~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n~~l~~~~~l~~~---f~--------------~v~~l-~~~gF 365 (381)
T 3dmg_A 304 TNPPFHVGGAVILDVAQAFVNVAAARLRPGGVFFLVSNPFLKYEPLLEEK---FG--------------AFQTL-KVAEY 365 (381)
T ss_dssp ECCCCCTTCSSCCHHHHHHHHHHHHHEEEEEEEEEEECTTSCHHHHHHHH---HS--------------CCEEE-EESSS
T ss_pred ECCchhhcccccHHHHHHHHHHHHHhcCcCcEEEEEEcCCCChHHHHHHh---hc--------------cEEEE-eCCCE
Confidence 9999987 33344678999999988777755543 322222222221 11 11223 67899
Q ss_pred EEEEEeeeec
Q 020710 300 KIRKRGLITT 309 (322)
Q Consensus 300 ~vv~~~~~~~ 309 (322)
+|++......
T Consensus 366 ~Vl~a~~~~~ 375 (381)
T 3dmg_A 366 KVLFAEKRGR 375 (381)
T ss_dssp EEEEEECC--
T ss_pred EEEEEEEecc
Confidence 9988665543
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.57 E-value=9.4e-14 Score=120.39 Aligned_cols=124 Identities=16% Similarity=0.172 Sum_probs=95.7
Q ss_pred CCCeEEEECCCcccchHHHHh--cCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC------CCC
Q 020710 148 KGIAVCDAGCGTGSLAIPLAK--QGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL------DGK 219 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~------~~~ 219 (322)
++.+|||||||+|..+..++. .+.+|+|+|+|+.|++.++++....+..+ ++++++|+.++ +++
T Consensus 70 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~--------v~~~~~d~~~~~~~~~~~~~ 141 (240)
T 1xdz_A 70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLEN--------TTFCHDRAETFGQRKDVRES 141 (240)
T ss_dssp GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSS--------EEEEESCHHHHTTCTTTTTC
T ss_pred CCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC--------EEEEeccHHHhcccccccCC
Confidence 478999999999999999985 37899999999999999999988776543 38999998664 478
Q ss_pred ccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCCCCCccccccCCHHHHHHHHHHCCC
Q 020710 220 YDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQKVGW 299 (322)
Q Consensus 220 fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf 299 (322)
||+|++.. +.+ ...+++.+.+++++||++.+....... ...+++.+.+++.||
T Consensus 142 fD~V~~~~----~~~--~~~~l~~~~~~LkpgG~l~~~~g~~~~---------------------~~~~~~~~~l~~~g~ 194 (240)
T 1xdz_A 142 YDIVTARA----VAR--LSVLSELCLPLVKKNGLFVALKAASAE---------------------EELNAGKKAITTLGG 194 (240)
T ss_dssp EEEEEEEC----CSC--HHHHHHHHGGGEEEEEEEEEEECC-CH---------------------HHHHHHHHHHHHTTE
T ss_pred ccEEEEec----cCC--HHHHHHHHHHhcCCCCEEEEEeCCCch---------------------HHHHHHHHHHHHcCC
Confidence 99999966 334 669999999988888877653211100 013467788999999
Q ss_pred EEEEEee
Q 020710 300 KIRKRGL 306 (322)
Q Consensus 300 ~vv~~~~ 306 (322)
++++...
T Consensus 195 ~~~~~~~ 201 (240)
T 1xdz_A 195 ELENIHS 201 (240)
T ss_dssp EEEEEEE
T ss_pred eEeEEEE
Confidence 9887543
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.3e-14 Score=124.44 Aligned_cols=148 Identities=12% Similarity=0.023 Sum_probs=99.6
Q ss_pred chhHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc-C--CEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCC
Q 020710 130 HSKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ-G--AIVSASDISAAMVAEARKKAEEELLADNGGEAPVMP 206 (322)
Q Consensus 130 ~~~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~-~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~ 206 (322)
.+++...++.-+...+..++.+|||+|||+|.++..+++. | .+|+|+|+|+.|++.+++++.+.+. +
T Consensus 59 rsklaa~i~~gl~~l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~n----------i 128 (233)
T 4df3_A 59 RSKLAAALLKGLIELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRN----------I 128 (233)
T ss_dssp TCHHHHHHHTTCSCCCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTT----------E
T ss_pred chHHHHHHHhchhhcCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcC----------e
Confidence 3455566666666555678999999999999999999987 3 5799999999999999988765432 2
Q ss_pred ceEEcccccC------CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCCCCCcc
Q 020710 207 KFEVKDLESL------DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKAT 280 (322)
Q Consensus 207 ~~~~~d~~~~------~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (322)
..+.+|.... .+.+|+|++.. .|..+ ...+++++++.+++||.+.+.-.....+... + ..
T Consensus 129 ~~V~~d~~~p~~~~~~~~~vDvVf~d~--~~~~~--~~~~l~~~~r~LKpGG~lvI~ik~r~~d~~~------p--~~-- 194 (233)
T 4df3_A 129 FPILGDARFPEKYRHLVEGVDGLYADV--AQPEQ--AAIVVRNARFFLRDGGYMLMAIKARSIDVTT------E--PS-- 194 (233)
T ss_dssp EEEESCTTCGGGGTTTCCCEEEEEECC--CCTTH--HHHHHHHHHHHEEEEEEEEEEEECCHHHHHT------C--CC--
T ss_pred eEEEEeccCccccccccceEEEEEEec--cCChh--HHHHHHHHHHhccCCCEEEEEEecccCCCCC------C--hH--
Confidence 6777776543 57899998643 33333 4588999999887766554321111111100 0 00
Q ss_pred ccccCCHHHHHHHHHHCCCEEEEEe
Q 020710 281 RAYLHAEADVERALQKVGWKIRKRG 305 (322)
Q Consensus 281 ~~~~~~~~~~~~~l~~aGf~vv~~~ 305 (322)
. ...+..+.|+++||++++..
T Consensus 195 ~----~~~~ev~~L~~~GF~l~e~i 215 (233)
T 4df3_A 195 E----VYKREIKTLMDGGLEIKDVV 215 (233)
T ss_dssp H----HHHHHHHHHHHTTCCEEEEE
T ss_pred H----HHHHHHHHHHHCCCEEEEEE
Confidence 0 11344567889999988753
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.56 E-value=1.8e-14 Score=119.82 Aligned_cols=113 Identities=18% Similarity=0.204 Sum_probs=89.9
Q ss_pred HHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhcc-CCCCCCCCCceEEc
Q 020710 133 TVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLAD-NGGEAPVMPKFEVK 211 (322)
Q Consensus 133 ~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~-~~~~~~~~~~~~~~ 211 (322)
..+.+++.+... ++.+|||+|||+|.++..+++.+.+|+|+|+|+.+++.++++....+..+ ++ .+..+
T Consensus 40 ~~~~l~~~~~~~---~~~~vLdiG~G~G~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~-------~~~~~ 109 (194)
T 1dus_A 40 GTKILVENVVVD---KDDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKENIKLNNLDNYDI-------RVVHS 109 (194)
T ss_dssp HHHHHHHHCCCC---TTCEEEEETCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCTTSCE-------EEEEC
T ss_pred HHHHHHHHcccC---CCCeEEEeCCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHHHHHHcCCCccce-------EEEEC
Confidence 345666666543 67899999999999999999988899999999999999999988766542 22 89999
Q ss_pred ccccC--CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEE
Q 020710 212 DLESL--DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSF 256 (322)
Q Consensus 212 d~~~~--~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~ 256 (322)
|+.+. +++||+|++...++|. .+....+++++.++++++|.+.+
T Consensus 110 d~~~~~~~~~~D~v~~~~~~~~~-~~~~~~~l~~~~~~L~~gG~l~~ 155 (194)
T 1dus_A 110 DLYENVKDRKYNKIITNPPIRAG-KEVLHRIIEEGKELLKDNGEIWV 155 (194)
T ss_dssp STTTTCTTSCEEEEEECCCSTTC-HHHHHHHHHHHHHHEEEEEEEEE
T ss_pred chhcccccCCceEEEECCCcccc-hhHHHHHHHHHHHHcCCCCEEEE
Confidence 98765 5789999999887652 23366899999998877776554
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.56 E-value=2.2e-14 Score=121.54 Aligned_cols=107 Identities=17% Similarity=0.136 Sum_probs=85.5
Q ss_pred hhHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEE
Q 020710 131 SKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEV 210 (322)
Q Consensus 131 ~~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~ 210 (322)
...+..+++.+.. .++.+|||||||+|.++..+++.+.+|+++|+|+.+++.+++++...+..+ +++..
T Consensus 63 ~~~~~~~~~~l~~---~~~~~vLdiG~G~G~~~~~la~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~--------v~~~~ 131 (210)
T 3lbf_A 63 PYMVARMTELLEL---TPQSRVLEIGTGSGYQTAILAHLVQHVCSVERIKGLQWQARRRLKNLDLHN--------VSTRH 131 (210)
T ss_dssp HHHHHHHHHHTTC---CTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHHHTTCCS--------EEEEE
T ss_pred HHHHHHHHHhcCC---CCCCEEEEEcCCCCHHHHHHHHhCCEEEEEecCHHHHHHHHHHHHHcCCCc--------eEEEE
Confidence 3455666666654 368899999999999999999999999999999999999999998766542 38999
Q ss_pred cccccC---CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEE
Q 020710 211 KDLESL---DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSF 256 (322)
Q Consensus 211 ~d~~~~---~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~ 256 (322)
+|+.+. +++||+|++..+++|+++ .+.+++++||.+.+
T Consensus 132 ~d~~~~~~~~~~~D~i~~~~~~~~~~~--------~~~~~L~pgG~lv~ 172 (210)
T 3lbf_A 132 GDGWQGWQARAPFDAIIVTAAPPEIPT--------ALMTQLDEGGILVL 172 (210)
T ss_dssp SCGGGCCGGGCCEEEEEESSBCSSCCT--------HHHHTEEEEEEEEE
T ss_pred CCcccCCccCCCccEEEEccchhhhhH--------HHHHhcccCcEEEE
Confidence 998764 578999999999999986 24555655654443
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.56 E-value=3.7e-14 Score=116.63 Aligned_cols=133 Identities=16% Similarity=0.045 Sum_probs=96.8
Q ss_pred HHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcc
Q 020710 135 ENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKD 212 (322)
Q Consensus 135 ~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d 212 (322)
..+++.+.. .++.+|||+|||+|.++..+++. +.+|+++|+|+.+++.+++++...+... ++ ++.+|
T Consensus 15 ~~~~~~~~~---~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~-------~~-~~~~d 83 (178)
T 3hm2_A 15 ALAISALAP---KPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSD-------RI-AVQQG 83 (178)
T ss_dssp HHHHHHHCC---CTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTT-------SE-EEECC
T ss_pred HHHHHHhcc---cCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCC-------CE-EEecc
Confidence 444555543 36779999999999999999988 6789999999999999999988766542 13 66677
Q ss_pred cccC----CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCCCCCccccccCCHH
Q 020710 213 LESL----DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEA 288 (322)
Q Consensus 213 ~~~~----~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (322)
..+. +++||+|++..+++| ..+++++.+++++++.+.+..... .+..
T Consensus 84 ~~~~~~~~~~~~D~i~~~~~~~~------~~~l~~~~~~L~~gG~l~~~~~~~-----------------------~~~~ 134 (178)
T 3hm2_A 84 APRAFDDVPDNPDVIFIGGGLTA------PGVFAAAWKRLPVGGRLVANAVTV-----------------------ESEQ 134 (178)
T ss_dssp TTGGGGGCCSCCSEEEECC-TTC------TTHHHHHHHTCCTTCEEEEEECSH-----------------------HHHH
T ss_pred hHhhhhccCCCCCEEEECCcccH------HHHHHHHHHhcCCCCEEEEEeecc-----------------------ccHH
Confidence 6433 288999999999877 278888888776666554422111 1245
Q ss_pred HHHHHHHHCCCEEEEEeee
Q 020710 289 DVERALQKVGWKIRKRGLI 307 (322)
Q Consensus 289 ~~~~~l~~aGf~vv~~~~~ 307 (322)
.+.+++++.|+++......
T Consensus 135 ~~~~~~~~~~~~~~~~~~~ 153 (178)
T 3hm2_A 135 MLWALRKQFGGTISSFAIS 153 (178)
T ss_dssp HHHHHHHHHCCEEEEEEEE
T ss_pred HHHHHHHHcCCeeEEEEee
Confidence 6778888889887765443
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=4.7e-14 Score=117.09 Aligned_cols=134 Identities=16% Similarity=0.150 Sum_probs=100.9
Q ss_pred hHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEc
Q 020710 132 KTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVK 211 (322)
Q Consensus 132 ~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (322)
.....+++.+.. .++.+|||+|||+|.++..+++.+.+|+++|+|+.+++.+++++...+...++ .+.++
T Consensus 20 ~~~~~~~~~~~~---~~~~~vldiG~G~G~~~~~l~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~-------~~~~~ 89 (192)
T 1l3i_A 20 EVRCLIMCLAEP---GKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNV-------TLMEG 89 (192)
T ss_dssp HHHHHHHHHHCC---CTTCEEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCTTE-------EEEES
T ss_pred HHHHHHHHhcCC---CCCCEEEEECCCCCHHHHHHHHhcCEEEEEECCHHHHHHHHHHHHHcCCCcce-------EEEec
Confidence 344555555543 36789999999999999999998889999999999999999998876653322 88899
Q ss_pred ccccC--C-CCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCCCCCccccccCCHH
Q 020710 212 DLESL--D-GKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEA 288 (322)
Q Consensus 212 d~~~~--~-~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (322)
|+.+. + ++||+|++..+++| ...+++.+.++++++|.+.+..... .+.+
T Consensus 90 d~~~~~~~~~~~D~v~~~~~~~~-----~~~~l~~~~~~l~~gG~l~~~~~~~-----------------------~~~~ 141 (192)
T 1l3i_A 90 DAPEALCKIPDIDIAVVGGSGGE-----LQEILRIIKDKLKPGGRIIVTAILL-----------------------ETKF 141 (192)
T ss_dssp CHHHHHTTSCCEEEEEESCCTTC-----HHHHHHHHHHTEEEEEEEEEEECBH-----------------------HHHH
T ss_pred CHHHhcccCCCCCEEEECCchHH-----HHHHHHHHHHhcCCCcEEEEEecCc-----------------------chHH
Confidence 98662 2 68999999887754 4588999999887777665432111 0245
Q ss_pred HHHHHHHHCCCEEEE
Q 020710 289 DVERALQKVGWKIRK 303 (322)
Q Consensus 289 ~~~~~l~~aGf~vv~ 303 (322)
++.+++++.||++..
T Consensus 142 ~~~~~l~~~g~~~~~ 156 (192)
T 1l3i_A 142 EAMECLRDLGFDVNI 156 (192)
T ss_dssp HHHHHHHHTTCCCEE
T ss_pred HHHHHHHHCCCceEE
Confidence 788999999995443
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=6e-15 Score=143.56 Aligned_cols=81 Identities=27% Similarity=0.470 Sum_probs=72.2
Q ss_pred CCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-----CCCccE
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-----DGKYDT 222 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-----~~~fD~ 222 (322)
++.+|||||||+|.++..|++.|++|+|||+|+.+|+.|+.++.+.+..+ ++|.++|++++ +++||+
T Consensus 66 ~~~~vLDvGCG~G~~~~~la~~ga~V~giD~~~~~i~~a~~~a~~~~~~~--------~~~~~~~~~~~~~~~~~~~fD~ 137 (569)
T 4azs_A 66 RPLNVLDLGCAQGFFSLSLASKGATIVGIDFQQENINVCRALAEENPDFA--------AEFRVGRIEEVIAALEEGEFDL 137 (569)
T ss_dssp SCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTSTTSE--------EEEEECCHHHHHHHCCTTSCSE
T ss_pred CCCeEEEECCCCcHHHHHHHhCCCEEEEECCCHHHHHHHHHHHHhcCCCc--------eEEEECCHHHHhhhccCCCccE
Confidence 56899999999999999999999999999999999999999998766322 38999998875 578999
Q ss_pred EEEcccccccCcch
Q 020710 223 VVCLDVLIHYPQSK 236 (322)
Q Consensus 223 V~~~~~l~~~~~~~ 236 (322)
|+|.++|+|++++.
T Consensus 138 v~~~e~~ehv~~~~ 151 (569)
T 4azs_A 138 AIGLSVFHHIVHLH 151 (569)
T ss_dssp EEEESCHHHHHHHH
T ss_pred EEECcchhcCCCHH
Confidence 99999999999754
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=5.8e-15 Score=126.88 Aligned_cols=159 Identities=17% Similarity=0.227 Sum_probs=97.9
Q ss_pred HHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc--CCEEEEEeCC-HHHHHHH---HHHhHHhhhccCCCCCCCCCce
Q 020710 135 ENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDIS-AAMVAEA---RKKAEEELLADNGGEAPVMPKF 208 (322)
Q Consensus 135 ~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s-~~~l~~a---~~~~~~~~~~~~~~~~~~~~~~ 208 (322)
+.+.+.+.. ++.+|||||||+|.++..+++. +.+|+|||+| +.|++.| +++....+..+ +.|
T Consensus 15 ~~~~~~~~~----~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~--------v~~ 82 (225)
T 3p2e_A 15 DELTEIIGQ----FDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSN--------VVF 82 (225)
T ss_dssp HHHHHHHTT----CSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSS--------EEE
T ss_pred HHHHHHhCC----CCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCC--------eEE
Confidence 445555543 4789999999999999999954 7789999999 7777776 66665554432 489
Q ss_pred EEcccccCCC-CccEEEEcccccccCcc------hHHHHHHHHHhccCCeEEEEE--CCChhhHHHHHHhhccCCCCCCc
Q 020710 209 EVKDLESLDG-KYDTVVCLDVLIHYPQS------KADGMIAHLASLAEKRLILSF--APKTFYYDLLKRVGELFPGPSKA 279 (322)
Q Consensus 209 ~~~d~~~~~~-~fD~V~~~~~l~~~~~~------~~~~~l~~l~~~~~~~~il~~--~~~~~~~~~~~~~~~~~~~~~~~ 279 (322)
+++|+.+++. .||.|.+..+...++.. ....+++++++++++||.+.+ .-... +.........++ ..
T Consensus 83 ~~~d~~~l~~~~~d~v~~i~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i~~~~~~~-~~~~~~~~~~~~---~~ 158 (225)
T 3p2e_A 83 VIAAAESLPFELKNIADSISILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFVTTYSDS-YEEAEIKKRGLP---LL 158 (225)
T ss_dssp ECCBTTBCCGGGTTCEEEEEEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEEEECCCC------------------C
T ss_pred EEcCHHHhhhhccCeEEEEEEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEEEEecccc-chhchhhhcCCC---CC
Confidence 9999988743 34666555443222210 023689999999888887665 22221 111110000111 11
Q ss_pred cccccCCHHHHHHHHHHCCCEEEEEeeeecc
Q 020710 280 TRAYLHAEADVERALQKVGWKIRKRGLITTQ 310 (322)
Q Consensus 280 ~~~~~~~~~~~~~~l~~aGf~vv~~~~~~~~ 310 (322)
...++ ..+++.++++++||+++..+.....
T Consensus 159 ~~~~~-~~~el~~~l~~aGf~v~~~~~~~~~ 188 (225)
T 3p2e_A 159 SKAYF-LSEQYKAELSNSGFRIDDVKELDNE 188 (225)
T ss_dssp CHHHH-HSHHHHHHHHHHTCEEEEEEEECHH
T ss_pred Chhhc-chHHHHHHHHHcCCCeeeeeecCHH
Confidence 11121 2235999999999999987766533
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=8.7e-15 Score=128.07 Aligned_cols=170 Identities=13% Similarity=0.159 Sum_probs=112.8
Q ss_pred hhHHHHHHHHhhhcCCCCCCeEEEECCCc--ccchHHHHhc---CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCC
Q 020710 131 SKTVENTMQMLNDEGSLKGIAVCDAGCGT--GSLAIPLAKQ---GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVM 205 (322)
Q Consensus 131 ~~~~~~~~~~l~~~~~~~~~~VLDvGcG~--G~~~~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~ 205 (322)
..++.+++.++... ....+|||||||+ +.++..++.. +++|++||.|+.|++.|++++..... .+
T Consensus 63 r~fl~rav~~l~~~--~g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~-~~------- 132 (277)
T 3giw_A 63 RDWMNRAVAHLAKE--AGIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPE-GR------- 132 (277)
T ss_dssp HHHHHHHHHHHHHT--SCCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSS-SE-------
T ss_pred HHHHHHHHHHhccc--cCCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCC-Cc-------
Confidence 34556777777642 1246899999997 5556655543 78999999999999999998865321 11
Q ss_pred CceEEcccccC---------CCCcc-----EEEEcccccccCcch-HHHHHHHHHhccCCeEEEEECC--ChhhHHHHHH
Q 020710 206 PKFEVKDLESL---------DGKYD-----TVVCLDVLIHYPQSK-ADGMIAHLASLAEKRLILSFAP--KTFYYDLLKR 268 (322)
Q Consensus 206 ~~~~~~d~~~~---------~~~fD-----~V~~~~~l~~~~~~~-~~~~l~~l~~~~~~~~il~~~~--~~~~~~~~~~ 268 (322)
+.|+++|+.++ .+.|| .|+++.+|||+++++ ...+++++.+.+++|+++.+.. ..........
T Consensus 133 ~~~v~aD~~~~~~~l~~~~~~~~~D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~d~~p~~~~~ 212 (277)
T 3giw_A 133 TAYVEADMLDPASILDAPELRDTLDLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGTAEFAPQEVGR 212 (277)
T ss_dssp EEEEECCTTCHHHHHTCHHHHTTCCTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEECCTTSHHHHHH
T ss_pred EEEEEecccChhhhhcccccccccCcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEeccCCCCHHHHHH
Confidence 28999999774 25577 689999999999865 4689999999887776655431 1111111222
Q ss_pred hhccCCCCCCccccccCCHHHHHHHHHHCCCEEEEEeeeecceehh
Q 020710 269 VGELFPGPSKATRAYLHAEADVERALQKVGWKIRKRGLITTQFYFA 314 (322)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~vv~~~~~~~~~~f~ 314 (322)
+.+.+... .....+++.++++.+|. ||++++-.......|..
T Consensus 213 ~~~~~~~~--g~p~~~rs~~ei~~~f~--GlelvePG~v~~~~Wrp 254 (277)
T 3giw_A 213 VAREYAAR--NMPMRLRTHAEAEEFFE--GLELVEPGIVQVHKWHP 254 (277)
T ss_dssp HHHHHHHT--TCCCCCCCHHHHHHTTT--TSEECTTCSEEGGGSSC
T ss_pred HHHHHHhc--CCCCccCCHHHHHHHhC--CCcccCCcEeecccccC
Confidence 22221110 11123579999999994 99988866665554443
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.55 E-value=6.4e-14 Score=124.43 Aligned_cols=132 Identities=17% Similarity=0.231 Sum_probs=90.2
Q ss_pred CCCeEEEECCCcccchHHHHhcCC-EEEEEeC-CHHHHHHHHHHh-----HHhhhccCCCCCCCCCceEEccccc----C
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQGA-IVSASDI-SAAMVAEARKKA-----EEELLADNGGEAPVMPKFEVKDLES----L 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~~~-~v~gvD~-s~~~l~~a~~~~-----~~~~~~~~~~~~~~~~~~~~~d~~~----~ 216 (322)
++.+|||||||+|.++..+++.|. +|+++|+ |+.|++.+++++ ...+... ....++.+...|..+ +
T Consensus 79 ~~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~ 155 (281)
T 3bzb_A 79 AGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTANSCSSET---VKRASPKVVPYRWGDSPDSL 155 (281)
T ss_dssp TTCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHTTCC-------------CCCEEEECCTTSCTHHH
T ss_pred CCCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHHhhhhhccccc---CCCCCeEEEEecCCCccHHH
Confidence 577999999999999999999877 8999999 899999999998 4333320 000023677555332 1
Q ss_pred -----CCCccEEEEcccccccCcchHHHHHHHHHhccC---C--eE--EEEECCChhhHHHHHHhhccCCCCCCcccccc
Q 020710 217 -----DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAE---K--RL--ILSFAPKTFYYDLLKRVGELFPGPSKATRAYL 284 (322)
Q Consensus 217 -----~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~---~--~~--il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (322)
+++||+|++.++++|.++ ...+++.+.++++ + ++ ++.+.+.... + .
T Consensus 156 ~~~~~~~~fD~Ii~~dvl~~~~~--~~~ll~~l~~~Lk~~~p~~gG~l~v~~~~~~~~----------~----------~ 213 (281)
T 3bzb_A 156 QRCTGLQRFQVVLLADLLSFHQA--HDALLRSVKMLLALPANDPTAVALVTFTHHRPH----------L----------A 213 (281)
T ss_dssp HHHHSCSSBSEEEEESCCSCGGG--HHHHHHHHHHHBCCTTTCTTCEEEEEECC--------------------------
T ss_pred HhhccCCCCCEEEEeCcccChHH--HHHHHHHHHHHhcccCCCCCCEEEEEEEeeecc----------c----------c
Confidence 478999999999998777 6699999999877 5 54 3344332210 0 0
Q ss_pred CCHHHHHHHHHHCC-CEEEEE
Q 020710 285 HAEADVERALQKVG-WKIRKR 304 (322)
Q Consensus 285 ~~~~~~~~~l~~aG-f~vv~~ 304 (322)
....++.+.+++.| |++...
T Consensus 214 ~~~~~~~~~l~~~G~f~v~~~ 234 (281)
T 3bzb_A 214 ERDLAFFRLVNADGALIAEPW 234 (281)
T ss_dssp --CTHHHHHHHHSTTEEEEEE
T ss_pred hhHHHHHHHHHhcCCEEEEEe
Confidence 11246777888999 998775
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.7e-14 Score=122.96 Aligned_cols=158 Identities=18% Similarity=0.209 Sum_probs=99.6
Q ss_pred HHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcc
Q 020710 135 ENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKD 212 (322)
Q Consensus 135 ~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d 212 (322)
...++.+... ++.+|||||||+|.++..+++. +.+|+|+|+|+.|++.+.+++.+..... ...++.|+++|
T Consensus 17 ~~~~~~l~~~---~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~----~~~~v~~~~~d 89 (218)
T 3mq2_A 17 DAEFEQLRSQ---YDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKG----GLPNLLYLWAT 89 (218)
T ss_dssp HHHHHHHHTT---SSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGT----CCTTEEEEECC
T ss_pred HHHHHHhhcc---CCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhc----CCCceEEEecc
Confidence 3445555543 5789999999999999999998 6899999999999986544332211110 11234899999
Q ss_pred cccC---CCCccEEEEcc---cc--cccCcchHHHHHHHHHhccCCeEEEEECCC--hhhHHHHHHhhccCCCCCCcccc
Q 020710 213 LESL---DGKYDTVVCLD---VL--IHYPQSKADGMIAHLASLAEKRLILSFAPK--TFYYDLLKRVGELFPGPSKATRA 282 (322)
Q Consensus 213 ~~~~---~~~fD~V~~~~---~l--~~~~~~~~~~~l~~l~~~~~~~~il~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 282 (322)
+.++ ++. |.|++.. .+ +|++++. .+++++++++++||.+.+.-. .+.... .... .+ ......
T Consensus 90 ~~~l~~~~~~-d~v~~~~~~~~~~~~~~~~~~--~~l~~~~~~LkpgG~l~~~~~~~~~~~~~-~~~~-~~---~~~~~~ 161 (218)
T 3mq2_A 90 AERLPPLSGV-GELHVLMPWGSLLRGVLGSSP--EMLRGMAAVCRPGASFLVALNLHAWRPSV-PEVG-EH---PEPTPD 161 (218)
T ss_dssp STTCCSCCCE-EEEEEESCCHHHHHHHHTSSS--HHHHHHHHTEEEEEEEEEEEEGGGBTTBC-GGGT-TC---CCCCHH
T ss_pred hhhCCCCCCC-CEEEEEccchhhhhhhhccHH--HHHHHHHHHcCCCcEEEEEeccccccccc-cccc-cC---CccchH
Confidence 9876 344 7666333 22 2667755 999999999888776655221 111000 0011 00 001111
Q ss_pred ccCCHHHHHHHHHHCCCEEEEEeeeec
Q 020710 283 YLHAEADVERALQKVGWKIRKRGLITT 309 (322)
Q Consensus 283 ~~~~~~~~~~~l~~aGf~vv~~~~~~~ 309 (322)
+..+++.+++.++||++++.+....
T Consensus 162 --~~~~~l~~~l~~aGf~i~~~~~~~~ 186 (218)
T 3mq2_A 162 --SADEWLAPRYAEAGWKLADCRYLEP 186 (218)
T ss_dssp --HHHHHHHHHHHHTTEEEEEEEEECH
T ss_pred --HHHHHHHHHHHHcCCCceeeeccch
Confidence 1245688899999999999776653
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=99.54 E-value=3e-14 Score=121.91 Aligned_cols=126 Identities=18% Similarity=0.212 Sum_probs=98.9
Q ss_pred CCCeEEEECCCcccchHHHHhcC--CEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--C-CCccE
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQG--AIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL--D-GKYDT 222 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~-~~fD~ 222 (322)
++.+|||||||+|.++..+++.+ .+|+++|+++.+++.|++++...++.+++ +++.+|+.+. + ..||+
T Consensus 21 ~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I-------~~~~gD~l~~~~~~~~~D~ 93 (230)
T 3lec_A 21 KGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKI-------DVRLANGLSAFEEADNIDT 93 (230)
T ss_dssp TTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTE-------EEEECSGGGGCCGGGCCCE
T ss_pred CCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcE-------EEEECchhhccccccccCE
Confidence 56899999999999999999986 36999999999999999999998887655 9999998765 2 37999
Q ss_pred EEEcccccccCcchHHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCCCCCccccccCCHHHHHHHHHHCCCEEE
Q 020710 223 VVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQKVGWKIR 302 (322)
Q Consensus 223 V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~vv 302 (322)
|+..+.. -+.+..++......+++++.+++.|. ...+.++++|.+.||.++
T Consensus 94 IviaGmG----g~lI~~IL~~~~~~l~~~~~lIlqp~-------------------------~~~~~lr~~L~~~Gf~i~ 144 (230)
T 3lec_A 94 ITICGMG----GRLIADILNNDIDKLQHVKTLVLQPN-------------------------NREDDLRKWLAANDFEIV 144 (230)
T ss_dssp EEEEEEC----HHHHHHHHHHTGGGGTTCCEEEEEES-------------------------SCHHHHHHHHHHTTEEEE
T ss_pred EEEeCCc----hHHHHHHHHHHHHHhCcCCEEEEECC-------------------------CChHHHHHHHHHCCCEEE
Confidence 8865443 23356777777766665555554332 136799999999999999
Q ss_pred EEeeeec
Q 020710 303 KRGLITT 309 (322)
Q Consensus 303 ~~~~~~~ 309 (322)
+..+...
T Consensus 145 ~E~lv~e 151 (230)
T 3lec_A 145 AEDILTE 151 (230)
T ss_dssp EEEEEEC
T ss_pred EEEEEEE
Confidence 9876553
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=5.8e-15 Score=135.37 Aligned_cols=142 Identities=13% Similarity=0.084 Sum_probs=99.4
Q ss_pred CCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccCCCCccEEEE
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESLDGKYDTVVC 225 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~fD~V~~ 225 (322)
+..+|||||||+|.++..+++. +.+++++|+ +.|++.+++. . + ++|+.+|+.+....||+|++
T Consensus 188 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~-~-------v~~~~~d~~~~~p~~D~v~~ 252 (352)
T 1fp2_A 188 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSGS------N-N-------LTYVGGDMFTSIPNADAVLL 252 (352)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCB------T-T-------EEEEECCTTTCCCCCSEEEE
T ss_pred cCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhcccC------C-C-------cEEEeccccCCCCCccEEEe
Confidence 4689999999999999999987 678999999 9999887641 1 1 28999998654234999999
Q ss_pred cccccccCcchHHHHHHHHHhccCC---eE-EEEEC---CChhhH---HHHHHhhccCCCCCCccccccCCHHHHHHHHH
Q 020710 226 LDVLIHYPQSKADGMIAHLASLAEK---RL-ILSFA---PKTFYY---DLLKRVGELFPGPSKATRAYLHAEADVERALQ 295 (322)
Q Consensus 226 ~~~l~~~~~~~~~~~l~~l~~~~~~---~~-il~~~---~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 295 (322)
..++||++++....+++++++++++ |+ +++.. +..... .............. ....++.+++.++++
T Consensus 253 ~~~lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~---~g~~~t~~e~~~ll~ 329 (352)
T 1fp2_A 253 KYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMACL---NGKERNEEEWKKLFI 329 (352)
T ss_dssp ESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGGG---TCCCEEHHHHHHHHH
T ss_pred ehhhccCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeecCCCCCccchhhhHhhccHHHHhc---cCCCCCHHHHHHHHH
Confidence 9999999987777999999998765 44 33332 111100 01111111100000 122357899999999
Q ss_pred HCCCEEEEEeee
Q 020710 296 KVGWKIRKRGLI 307 (322)
Q Consensus 296 ~aGf~vv~~~~~ 307 (322)
++||++++....
T Consensus 330 ~aGf~~~~~~~~ 341 (352)
T 1fp2_A 330 EAGFQHYKISPL 341 (352)
T ss_dssp HTTCCEEEEEEE
T ss_pred HCCCCeeEEEec
Confidence 999999886553
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.54 E-value=3e-15 Score=129.27 Aligned_cols=162 Identities=18% Similarity=0.197 Sum_probs=96.6
Q ss_pred HHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCC-EEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEE-cc
Q 020710 135 ENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGA-IVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEV-KD 212 (322)
Q Consensus 135 ~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~-~d 212 (322)
+++++.+... .++.+|||||||+|.++..+++.|+ +|+|+|+|+.|++.++++........+. ++.+.. .|
T Consensus 26 ~~~L~~~~~~--~~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~~a~~~~~~~~~~~~~-----~~~~~~~~~ 98 (232)
T 3opn_A 26 EKALKEFHLE--INGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAWKIRSDERVVVMEQF-----NFRNAVLAD 98 (232)
T ss_dssp HHHHHHTTCC--CTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCCHHHHTCTTEEEECSC-----CGGGCCGGG
T ss_pred HHHHHHcCCC--CCCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHHHHHHhCccccccccc-----eEEEeCHhH
Confidence 4555555432 3467999999999999999999985 8999999999999987754332111100 112222 22
Q ss_pred cccCCCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCCCCCccccccCCHHHHHH
Q 020710 213 LESLDGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADVER 292 (322)
Q Consensus 213 ~~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (322)
+.. ..||.+.+..++.++ ..+++++++++++||.+.+.-...+......++. .+..........+.+++.+
T Consensus 99 ~~~--~~~d~~~~D~v~~~l-----~~~l~~i~rvLkpgG~lv~~~~p~~e~~~~~~~~--~G~~~d~~~~~~~~~~l~~ 169 (232)
T 3opn_A 99 FEQ--GRPSFTSIDVSFISL-----DLILPPLYEILEKNGEVAALIKPQFEAGREQVGK--NGIIRDPKVHQMTIEKVLK 169 (232)
T ss_dssp CCS--CCCSEEEECCSSSCG-----GGTHHHHHHHSCTTCEEEEEECHHHHSCHHHHC---CCCCCCHHHHHHHHHHHHH
T ss_pred cCc--CCCCEEEEEEEhhhH-----HHHHHHHHHhccCCCEEEEEECcccccCHHHhCc--CCeecCcchhHHHHHHHHH
Confidence 221 236776666666555 3788999998766664443212111100011111 0111111222347889999
Q ss_pred HHHHCCCEEEEEeeeeccee
Q 020710 293 ALQKVGWKIRKRGLITTQFY 312 (322)
Q Consensus 293 ~l~~aGf~vv~~~~~~~~~~ 312 (322)
+++++||+++........-+
T Consensus 170 ~l~~aGf~v~~~~~~pi~g~ 189 (232)
T 3opn_A 170 TATQLGFSVKGLTFSPIKGG 189 (232)
T ss_dssp HHHHHTEEEEEEEECSSCBT
T ss_pred HHHHCCCEEEEEEEccCCCC
Confidence 99999999998776554433
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=5.4e-15 Score=128.10 Aligned_cols=149 Identities=22% Similarity=0.105 Sum_probs=105.6
Q ss_pred HHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcc
Q 020710 133 TVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKD 212 (322)
Q Consensus 133 ~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d 212 (322)
....+...+... .++.+|||+|||+|.++..+++.+.+|+|+|+|+.|++.+++++...++..++ .|+++|
T Consensus 65 ~~~~l~~~~~~~--~~~~~vLD~gcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~-------~~~~~d 135 (241)
T 3gdh_A 65 IAEHIAGRVSQS--FKCDVVVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIALARNNAEVYGIADKI-------EFICGD 135 (241)
T ss_dssp HHHHHHHHHHHH--SCCSEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCGGGE-------EEEESC
T ss_pred HHHHHHHHhhhc--cCCCEEEECccccCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCCcCe-------EEEECC
Confidence 345555555443 25789999999999999999999999999999999999999999887763333 899999
Q ss_pred cccC--CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCCCCCccccccCCHHHH
Q 020710 213 LESL--DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADV 290 (322)
Q Consensus 213 ~~~~--~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (322)
+.++ +++||+|++...++|..+.. ..+.+++++++++|++.+. .......... .. -....+.+++
T Consensus 136 ~~~~~~~~~~D~v~~~~~~~~~~~~~--~~~~~~~~~L~pgG~~i~~-------~~~~~~~~~~---~~-lp~~~~~~~~ 202 (241)
T 3gdh_A 136 FLLLASFLKADVVFLSPPWGGPDYAT--AETFDIRTMMSPDGFEIFR-------LSKKITNNIV---YF-LPRNADIDQV 202 (241)
T ss_dssp HHHHGGGCCCSEEEECCCCSSGGGGG--SSSBCTTTSCSSCHHHHHH-------HHHHHCSCEE---EE-EETTBCHHHH
T ss_pred hHHhcccCCCCEEEECCCcCCcchhh--hHHHHHHhhcCCcceeHHH-------HHHhhCCceE---EE-CCCCCCHHHH
Confidence 8775 67999999999999887644 4666777777776654321 1111111100 00 0012367788
Q ss_pred HHHHHHCCCEEEE
Q 020710 291 ERALQKVGWKIRK 303 (322)
Q Consensus 291 ~~~l~~aGf~vv~ 303 (322)
.+++...|.-.++
T Consensus 203 ~~~l~~~g~~~i~ 215 (241)
T 3gdh_A 203 ASLAGPGGQVEIE 215 (241)
T ss_dssp HHTTCTTCCEEEE
T ss_pred HHHhccCCCEEEE
Confidence 8888888865554
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=2.8e-14 Score=131.57 Aligned_cols=145 Identities=10% Similarity=0.022 Sum_probs=101.7
Q ss_pred CCCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-CCCccEE
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-DGKYDTV 223 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~fD~V 223 (322)
.+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++. .+ ++|+.+|+.+. +.. |+|
T Consensus 202 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~-------v~~~~~d~~~~~p~~-D~v 265 (368)
T 3reo_A 202 EGLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPAF-------SG-------VEHLGGDMFDGVPKG-DAI 265 (368)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC-------TT-------EEEEECCTTTCCCCC-SEE
T ss_pred cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhhc-------CC-------CEEEecCCCCCCCCC-CEE
Confidence 35689999999999999999986 678999999 8898777532 11 38999998764 333 999
Q ss_pred EEcccccccCcchHHHHHHHHHhccCCeEEEEE-C---CChh----hHHH--HHHhhccCCCCCCccccccCCHHHHHHH
Q 020710 224 VCLDVLIHYPQSKADGMIAHLASLAEKRLILSF-A---PKTF----YYDL--LKRVGELFPGPSKATRAYLHAEADVERA 293 (322)
Q Consensus 224 ~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~-~---~~~~----~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (322)
++..++||++++....+++++++.+++|+.+.+ . +... .... ...+.... .......++.++++++
T Consensus 266 ~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~g~~rt~~e~~~l 341 (368)
T 3reo_A 266 FIKWICHDWSDEHCLKLLKNCYAALPDHGKVIVAEYILPPSPDPSIATKVVIHTDALMLA----YNPGGKERTEKEFQAL 341 (368)
T ss_dssp EEESCGGGBCHHHHHHHHHHHHHHSCTTCEEEEEECCCCSSCCCCHHHHHHHHHHHHHHH----HSSBCCCCCHHHHHHH
T ss_pred EEechhhcCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhhhHHHhhhHHHHh----hcCCCccCCHHHHHHH
Confidence 999999999998888999999998766554332 1 1110 0000 01111000 0002234589999999
Q ss_pred HHHCCCEEEEEeeeecce
Q 020710 294 LQKVGWKIRKRGLITTQF 311 (322)
Q Consensus 294 l~~aGf~vv~~~~~~~~~ 311 (322)
++++||++++.......+
T Consensus 342 l~~AGF~~v~~~~~~~~~ 359 (368)
T 3reo_A 342 AMASGFRGFKVASCAFNT 359 (368)
T ss_dssp HHHTTCCEEEEEEEETTE
T ss_pred HHHCCCeeeEEEEeCCCc
Confidence 999999999876665443
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=4.4e-14 Score=130.09 Aligned_cols=145 Identities=12% Similarity=0.057 Sum_probs=101.6
Q ss_pred CCCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-CCCccEE
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-DGKYDTV 223 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~fD~V 223 (322)
.+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++. .+ ++|+.+|+.+. +.. |+|
T Consensus 200 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~-------v~~~~~D~~~~~p~~-D~v 263 (364)
T 3p9c_A 200 EGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQF-------PG-------VTHVGGDMFKEVPSG-DTI 263 (364)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC-------TT-------EEEEECCTTTCCCCC-SEE
T ss_pred cCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhhc-------CC-------eEEEeCCcCCCCCCC-CEE
Confidence 35689999999999999999986 678999999 8888776542 12 38999998764 333 999
Q ss_pred EEcccccccCcchHHHHHHHHHhccCCeEEEEE-C---CCh---h-hHH--HHHHhhccCCCCCCccccccCCHHHHHHH
Q 020710 224 VCLDVLIHYPQSKADGMIAHLASLAEKRLILSF-A---PKT---F-YYD--LLKRVGELFPGPSKATRAYLHAEADVERA 293 (322)
Q Consensus 224 ~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~-~---~~~---~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (322)
++..++||++++....+++++++.+++|+.+.+ . +.. . ... ....+.-... ......++.++|+++
T Consensus 264 ~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~----~~~g~~rt~~e~~~l 339 (364)
T 3p9c_A 264 LMKWILHDWSDQHCATLLKNCYDALPAHGKVVLVQCILPVNPEANPSSQGVFHVDMIMLAH----NPGGRERYEREFQAL 339 (364)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSCCSSHHHHHHHHHHHHHHHH----CSSCCCCBHHHHHHH
T ss_pred EehHHhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCcchhhhhHHHhHHHHHhc----ccCCccCCHHHHHHH
Confidence 999999999988888999999998765554332 1 111 0 000 0111111100 001224578999999
Q ss_pred HHHCCCEEEEEeeeecce
Q 020710 294 LQKVGWKIRKRGLITTQF 311 (322)
Q Consensus 294 l~~aGf~vv~~~~~~~~~ 311 (322)
++++||++++.......+
T Consensus 340 l~~AGF~~v~~~~~~~~~ 357 (364)
T 3p9c_A 340 ARGAGFTGVKSTYIYANA 357 (364)
T ss_dssp HHHTTCCEEEEEEEETTE
T ss_pred HHHCCCceEEEEEcCCce
Confidence 999999999977665443
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=5.1e-14 Score=120.22 Aligned_cols=125 Identities=16% Similarity=0.199 Sum_probs=98.2
Q ss_pred CCCeEEEECCCcccchHHHHhcC--CEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEccccc-CC-C-CccE
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQG--AIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLES-LD-G-KYDT 222 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~-~-~fD~ 222 (322)
++.+|||||||+|.++..+++.+ .+|+++|+++.+++.|++++...++.+++ +++.+|..+ ++ + .||+
T Consensus 15 ~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i-------~~~~~d~l~~l~~~~~~D~ 87 (225)
T 3kr9_A 15 QGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKI-------QVRLANGLAAFEETDQVSV 87 (225)
T ss_dssp TTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTE-------EEEECSGGGGCCGGGCCCE
T ss_pred CCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceE-------EEEECchhhhcccCcCCCE
Confidence 46799999999999999999985 37999999999999999999999887655 899999854 33 3 6999
Q ss_pred EEEcccccccCcchHHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCCCCCccccccCCHHHHHHHHHHCCCEEE
Q 020710 223 VVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQKVGWKIR 302 (322)
Q Consensus 223 V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~vv 302 (322)
|+....- .+.+..++......+.+++.+++.+.. ..+.+.++|.+.||.++
T Consensus 88 IviaG~G----g~~i~~Il~~~~~~L~~~~~lVlq~~~-------------------------~~~~vr~~L~~~Gf~i~ 138 (225)
T 3kr9_A 88 ITIAGMG----GRLIARILEEGLGKLANVERLILQPNN-------------------------REDDLRIWLQDHGFQIV 138 (225)
T ss_dssp EEEEEEC----HHHHHHHHHHTGGGCTTCCEEEEEESS-------------------------CHHHHHHHHHHTTEEEE
T ss_pred EEEcCCC----hHHHHHHHHHHHHHhCCCCEEEEECCC-------------------------CHHHHHHHHHHCCCEEE
Confidence 9875432 233567888877766666655553321 35789999999999999
Q ss_pred EEeeee
Q 020710 303 KRGLIT 308 (322)
Q Consensus 303 ~~~~~~ 308 (322)
+..+..
T Consensus 139 ~e~lv~ 144 (225)
T 3kr9_A 139 AESILE 144 (225)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 977654
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.52 E-value=1.2e-13 Score=117.50 Aligned_cols=101 Identities=18% Similarity=0.137 Sum_probs=79.1
Q ss_pred CCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-----CCCc
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-----DGKY 220 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-----~~~f 220 (322)
++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.|++++...+..+ +.++++|+.++ +++|
T Consensus 41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~--------v~~~~~d~~~~~~~~~~~~~ 112 (214)
T 1yzh_A 41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPN--------IKLLWVDGSDLTDYFEDGEI 112 (214)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSS--------EEEEECCSSCGGGTSCTTCC
T ss_pred CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCC--------EEEEeCCHHHHHhhcCCCCC
Confidence 4779999999999999999987 5799999999999999999988776532 38999998763 5789
Q ss_pred cEEEEcccccccCcc------hHHHHHHHHHhccCCeEEEEE
Q 020710 221 DTVVCLDVLIHYPQS------KADGMIAHLASLAEKRLILSF 256 (322)
Q Consensus 221 D~V~~~~~l~~~~~~------~~~~~l~~l~~~~~~~~il~~ 256 (322)
|+|+++....+.... ....+++.+.+++++||++.+
T Consensus 113 D~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 154 (214)
T 1yzh_A 113 DRLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHF 154 (214)
T ss_dssp SEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEE
T ss_pred CEEEEECCCCccccchhhhccCCHHHHHHHHHHcCCCcEEEE
Confidence 999998654332211 124799999998776665554
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=8.2e-14 Score=123.27 Aligned_cols=98 Identities=15% Similarity=0.172 Sum_probs=80.2
Q ss_pred CCCCCeEEEECCCcccch-HHHHhc-CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-CCCccE
Q 020710 146 SLKGIAVCDAGCGTGSLA-IPLAKQ-GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-DGKYDT 222 (322)
Q Consensus 146 ~~~~~~VLDvGcG~G~~~-~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~fD~ 222 (322)
..++.+|||||||+|.++ ..+++. +++|+|+|+|++|++.|++++...+. .++ +|+++|+.++ +++||+
T Consensus 120 l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl-~~v-------~~v~gDa~~l~d~~FDv 191 (298)
T 3fpf_A 120 FRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGV-DGV-------NVITGDETVIDGLEFDV 191 (298)
T ss_dssp CCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTC-CSE-------EEEESCGGGGGGCCCSE
T ss_pred CCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCC-CCe-------EEEECchhhCCCCCcCE
Confidence 457899999999999876 445554 89999999999999999999988776 444 9999999877 689999
Q ss_pred EEEcccccccCcchHHHHHHHHHhccCCeEEEEE
Q 020710 223 VVCLDVLIHYPQSKADGMIAHLASLAEKRLILSF 256 (322)
Q Consensus 223 V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~ 256 (322)
|++... .++ ..++++++.+.+++||.+.+
T Consensus 192 V~~~a~---~~d--~~~~l~el~r~LkPGG~Lvv 220 (298)
T 3fpf_A 192 LMVAAL---AEP--KRRVFRNIHRYVDTETRIIY 220 (298)
T ss_dssp EEECTT---CSC--HHHHHHHHHHHCCTTCEEEE
T ss_pred EEECCC---ccC--HHHHHHHHHHHcCCCcEEEE
Confidence 998654 355 55999999998877666554
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.52 E-value=5e-15 Score=125.43 Aligned_cols=141 Identities=21% Similarity=0.218 Sum_probs=85.6
Q ss_pred CchhHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCC
Q 020710 129 GHSKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMP 206 (322)
Q Consensus 129 ~~~~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~ 206 (322)
..+.+++.+++.+... .++.+|||+|||+|.++..+++. +.+|+|+|+|+.|++.+++++...+. + +
T Consensus 13 ~~~~~~~~~~~~l~~~--~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--~-------~ 81 (215)
T 4dzr_A 13 DTEVLVEEAIRFLKRM--PSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGA--V-------V 81 (215)
T ss_dssp HHHHHHHHHHHHHTTC--CTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC---------------------------
T ss_pred cHHHHHHHHHHHhhhc--CCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCC--c-------e
Confidence 3445667777777542 35789999999999999999998 56899999999999999999877654 2 2
Q ss_pred ceEEcccccC--C-----CCccEEEEcccccc------cCcchH------------------HHHHHHHHhccCCeEE-E
Q 020710 207 KFEVKDLESL--D-----GKYDTVVCLDVLIH------YPQSKA------------------DGMIAHLASLAEKRLI-L 254 (322)
Q Consensus 207 ~~~~~d~~~~--~-----~~fD~V~~~~~l~~------~~~~~~------------------~~~l~~l~~~~~~~~i-l 254 (322)
+++++|+.+. + ++||+|+++..+++ ++.... ..+++++.++++++|+ +
T Consensus 82 ~~~~~d~~~~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 161 (215)
T 4dzr_A 82 DWAAADGIEWLIERAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGV 161 (215)
T ss_dssp -CCHHHHHHHHHHHHHTTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEE
T ss_pred EEEEcchHhhhhhhhhccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEE
Confidence 8888888654 3 89999999654433 222211 5777888887776665 4
Q ss_pred EECCChhhHHHHHHhhccCCCCCCccccccCCHHHHHHHHH--HCCCEEEEE
Q 020710 255 SFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQ--KVGWKIRKR 304 (322)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~aGf~vv~~ 304 (322)
.+... ....+++.++++ +.||..++.
T Consensus 162 ~~~~~------------------------~~~~~~~~~~l~~~~~gf~~~~~ 189 (215)
T 4dzr_A 162 FLEVG------------------------HNQADEVARLFAPWRERGFRVRK 189 (215)
T ss_dssp EEECT------------------------TSCHHHHHHHTGGGGGGTEECCE
T ss_pred EEEEC------------------------CccHHHHHHHHHHhhcCCceEEE
Confidence 44221 113567888888 889976553
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.52 E-value=6.3e-14 Score=128.25 Aligned_cols=101 Identities=20% Similarity=0.169 Sum_probs=86.0
Q ss_pred CCCeEEEECCCcccchHHHHhcCC-EEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--CCCccEEE
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQGA-IVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL--DGKYDTVV 224 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~fD~V~ 224 (322)
++.+|||||||+|.++..+++.+. +|+|+|+|+ |++.++++....++..++ +++.+|+.+. +++||+|+
T Consensus 50 ~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~l~~~v-------~~~~~d~~~~~~~~~~D~Iv 121 (348)
T 2y1w_A 50 KDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRI-------VVIPGKVEEVSLPEQVDIII 121 (348)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHTTCTTTE-------EEEESCTTTCCCSSCEEEEE
T ss_pred CcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHH-HHHHHHHHHHHcCCCCcE-------EEEEcchhhCCCCCceeEEE
Confidence 578999999999999999999865 899999996 899999998877764444 8999999875 57899999
Q ss_pred EcccccccCcchHHHHHHHHHhccCCeEEEEE
Q 020710 225 CLDVLIHYPQSKADGMIAHLASLAEKRLILSF 256 (322)
Q Consensus 225 ~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~ 256 (322)
+..+++|+..+.....+.+++++++++|++.+
T Consensus 122 s~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~ 153 (348)
T 2y1w_A 122 SEPMGYMLFNERMLESYLHAKKYLKPSGNMFP 153 (348)
T ss_dssp ECCCBTTBTTTSHHHHHHHGGGGEEEEEEEES
T ss_pred EeCchhcCChHHHHHHHHHHHhhcCCCeEEEE
Confidence 99999998876677888888888888887754
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=1.7e-13 Score=119.58 Aligned_cols=126 Identities=18% Similarity=0.091 Sum_probs=96.7
Q ss_pred CCCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC------CC
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL------DG 218 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~------~~ 218 (322)
.++.+|||||||+|..+..++.. +.+|+++|+|+.+++.++++....++.+ ++++++|++++ ++
T Consensus 79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~--------v~~~~~d~~~~~~~~~~~~ 150 (249)
T 3g89_A 79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKG--------ARALWGRAEVLAREAGHRE 150 (249)
T ss_dssp CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSS--------EEEEECCHHHHTTSTTTTT
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCc--------eEEEECcHHHhhcccccCC
Confidence 35789999999999999999876 6799999999999999999998877653 38999998765 27
Q ss_pred CccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCCCCCccccccCCHHHHHHHHHHCC
Q 020710 219 KYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQKVG 298 (322)
Q Consensus 219 ~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG 298 (322)
+||+|++..+ .+ +..+++.+.+++++||.+.+.......+ ...++.+.+...|
T Consensus 151 ~fD~I~s~a~----~~--~~~ll~~~~~~LkpgG~l~~~~g~~~~~---------------------e~~~~~~~l~~~G 203 (249)
T 3g89_A 151 AYARAVARAV----AP--LCVLSELLLPFLEVGGAAVAMKGPRVEE---------------------ELAPLPPALERLG 203 (249)
T ss_dssp CEEEEEEESS----CC--HHHHHHHHGGGEEEEEEEEEEECSCCHH---------------------HHTTHHHHHHHHT
T ss_pred CceEEEECCc----CC--HHHHHHHHHHHcCCCeEEEEEeCCCcHH---------------------HHHHHHHHHHHcC
Confidence 8999998643 33 5689999999888887665432211100 1235667788889
Q ss_pred CEEEEEeee
Q 020710 299 WKIRKRGLI 307 (322)
Q Consensus 299 f~vv~~~~~ 307 (322)
|++++....
T Consensus 204 ~~~~~~~~~ 212 (249)
T 3g89_A 204 GRLGEVLAL 212 (249)
T ss_dssp EEEEEEEEE
T ss_pred CeEEEEEEe
Confidence 998876544
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=1.9e-14 Score=132.94 Aligned_cols=144 Identities=10% Similarity=-0.018 Sum_probs=100.4
Q ss_pred CCCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccCCCCccEEE
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESLDGKYDTVV 224 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~fD~V~ 224 (322)
.+..+|||||||+|.++..+++. +.+++++|+ +.|++.+++. . .++|+.+|+.+....||+|+
T Consensus 208 ~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~------~--------~v~~~~~d~~~~~~~~D~v~ 272 (372)
T 1fp1_D 208 EGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPPL------S--------GIEHVGGDMFASVPQGDAMI 272 (372)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC------T--------TEEEEECCTTTCCCCEEEEE
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhhc------C--------CCEEEeCCcccCCCCCCEEE
Confidence 35689999999999999999987 467899999 9999877642 1 13899999876423399999
Q ss_pred EcccccccCcchHHHHHHHHHhccCCeEEEEEC----CChhh---HHHHHHhhccCCCCCCccccccCCHHHHHHHHHHC
Q 020710 225 CLDVLIHYPQSKADGMIAHLASLAEKRLILSFA----PKTFY---YDLLKRVGELFPGPSKATRAYLHAEADVERALQKV 297 (322)
Q Consensus 225 ~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~----~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a 297 (322)
+..++||++++....+++++++++++|+.+.+. +.... .............. ......++.+++.++++++
T Consensus 273 ~~~~lh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~t~~e~~~ll~~a 350 (372)
T 1fp1_D 273 LKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFI--TVGGRERTEKQYEKLSKLS 350 (372)
T ss_dssp EESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHH--HHSCCCEEHHHHHHHHHHT
T ss_pred EecccccCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCccchHHHHHHHhhHHHHh--ccCCccCCHHHHHHHHHHC
Confidence 999999999977779999999988766644332 21110 00000010100000 0012235899999999999
Q ss_pred CCEEEEEeee
Q 020710 298 GWKIRKRGLI 307 (322)
Q Consensus 298 Gf~vv~~~~~ 307 (322)
||++++....
T Consensus 351 Gf~~~~~~~~ 360 (372)
T 1fp1_D 351 GFSKFQVACR 360 (372)
T ss_dssp TCSEEEEEEE
T ss_pred CCceEEEEEc
Confidence 9999987654
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.52 E-value=6.4e-14 Score=122.34 Aligned_cols=131 Identities=16% Similarity=0.164 Sum_probs=99.8
Q ss_pred HHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc---CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEc
Q 020710 135 ENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ---GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVK 211 (322)
Q Consensus 135 ~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (322)
..++..+.. .++.+|||+|||+|.++..+++. +.+|+++|+|+.+++.|++++...+..+++ ++.++
T Consensus 83 ~~i~~~~~~---~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v-------~~~~~ 152 (255)
T 3mb5_A 83 ALIVAYAGI---SPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRV-------TIKLK 152 (255)
T ss_dssp HHHHHHTTC---CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTE-------EEECS
T ss_pred HHHHHhhCC---CCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCce-------EEEEC
Confidence 344444443 46889999999999999999988 679999999999999999999888766544 89999
Q ss_pred ccccC--CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCCCCCccccccCCHHH
Q 020710 212 DLESL--DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEAD 289 (322)
Q Consensus 212 d~~~~--~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (322)
|+.+. +++||+|++ +.+++. .+++++.+++++++.+.+..... ...++
T Consensus 153 d~~~~~~~~~~D~v~~-----~~~~~~--~~l~~~~~~L~~gG~l~~~~~~~-----------------------~~~~~ 202 (255)
T 3mb5_A 153 DIYEGIEEENVDHVIL-----DLPQPE--RVVEHAAKALKPGGFFVAYTPCS-----------------------NQVMR 202 (255)
T ss_dssp CGGGCCCCCSEEEEEE-----CSSCGG--GGHHHHHHHEEEEEEEEEEESSH-----------------------HHHHH
T ss_pred chhhccCCCCcCEEEE-----CCCCHH--HHHHHHHHHcCCCCEEEEEECCH-----------------------HHHHH
Confidence 98765 678999997 566654 78999999887777665422111 02456
Q ss_pred HHHHHHHCC--CEEEEEe
Q 020710 290 VERALQKVG--WKIRKRG 305 (322)
Q Consensus 290 ~~~~l~~aG--f~vv~~~ 305 (322)
+.+.+++.| |..++..
T Consensus 203 ~~~~l~~~g~~f~~~~~~ 220 (255)
T 3mb5_A 203 LHEKLREFKDYFMKPRTI 220 (255)
T ss_dssp HHHHHHHTGGGBSCCEEE
T ss_pred HHHHHHHcCCCccccEEE
Confidence 778888888 8766543
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.52 E-value=6.7e-14 Score=120.67 Aligned_cols=125 Identities=14% Similarity=0.149 Sum_probs=97.5
Q ss_pred CCCeEEEECCCcccchHHHHhcC--CEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--CC-CccE
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQG--AIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL--DG-KYDT 222 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~-~fD~ 222 (322)
++.+|||||||+|.++..+++.+ .+|+++|+++.+++.|++++...++.+++ .+..+|..+. ++ +||+
T Consensus 21 ~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I-------~v~~gD~l~~~~~~~~~D~ 93 (244)
T 3gnl_A 21 KNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQI-------DVRKGNGLAVIEKKDAIDT 93 (244)
T ss_dssp SSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTE-------EEEECSGGGGCCGGGCCCE
T ss_pred CCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceE-------EEEecchhhccCccccccE
Confidence 46899999999999999999985 36999999999999999999998887655 9999998765 23 5999
Q ss_pred EEEcccccccCcchHHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCCCCCccccccCCHHHHHHHHHHCCCEEE
Q 020710 223 VVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQKVGWKIR 302 (322)
Q Consensus 223 V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~vv 302 (322)
|++.... .+.+..++......+++++.+++.+.. ..+.++++|.+.||.++
T Consensus 94 IviagmG----g~lI~~IL~~~~~~L~~~~~lIlq~~~-------------------------~~~~lr~~L~~~Gf~i~ 144 (244)
T 3gnl_A 94 IVIAGMG----GTLIRTILEEGAAKLAGVTKLILQPNI-------------------------AAWQLREWSEQNNWLIT 144 (244)
T ss_dssp EEEEEEC----HHHHHHHHHHTGGGGTTCCEEEEEESS-------------------------CHHHHHHHHHHHTEEEE
T ss_pred EEEeCCc----hHHHHHHHHHHHHHhCCCCEEEEEcCC-------------------------ChHHHHHHHHHCCCEEE
Confidence 9875433 233567777777766655555543321 35789999999999998
Q ss_pred EEeeee
Q 020710 303 KRGLIT 308 (322)
Q Consensus 303 ~~~~~~ 308 (322)
+.....
T Consensus 145 ~E~lv~ 150 (244)
T 3gnl_A 145 SEAILR 150 (244)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 866554
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.51 E-value=9.3e-14 Score=121.82 Aligned_cols=129 Identities=16% Similarity=0.201 Sum_probs=97.9
Q ss_pred CCCeEEEECCCcccchHHHHhcCC-EEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-----CCCcc
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQGA-IVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-----DGKYD 221 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-----~~~fD 221 (322)
++.+|||+|||+|.++..+++.+. +|+|+|+++.+++.|++++...++.+++ .++++|+.+. +++||
T Consensus 49 ~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~~v-------~~~~~D~~~~~~~~~~~~fD 121 (259)
T 3lpm_A 49 RKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQI-------EIIEYDLKKITDLIPKERAD 121 (259)
T ss_dssp SCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHHHHHTTCTTTE-------EEECSCGGGGGGTSCTTCEE
T ss_pred CCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCcccE-------EEEECcHHHhhhhhccCCcc
Confidence 578999999999999999999855 8999999999999999999888776544 8999998765 57899
Q ss_pred EEEEccccccc------------------CcchHHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCCCCCccccc
Q 020710 222 TVVCLDVLIHY------------------PQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAY 283 (322)
Q Consensus 222 ~V~~~~~l~~~------------------~~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (322)
+|+++..+.+. ....+..+++.+.++++++|.+.+....
T Consensus 122 ~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~----------------------- 178 (259)
T 3lpm_A 122 IVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHRP----------------------- 178 (259)
T ss_dssp EEEECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEECT-----------------------
T ss_pred EEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEcH-----------------------
Confidence 99997654333 1122457899999988777766552110
Q ss_pred cCCHHHHHHHHHHCCCEEEEEeee
Q 020710 284 LHAEADVERALQKVGWKIRKRGLI 307 (322)
Q Consensus 284 ~~~~~~~~~~l~~aGf~vv~~~~~ 307 (322)
....++.+++++.||.+.....+
T Consensus 179 -~~~~~~~~~l~~~~~~~~~~~~v 201 (259)
T 3lpm_A 179 -ERLLDIIDIMRKYRLEPKRIQFV 201 (259)
T ss_dssp -TTHHHHHHHHHHTTEEEEEEEEE
T ss_pred -HHHHHHHHHHHHCCCceEEEEEe
Confidence 13467788888888887765443
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.51 E-value=1.1e-13 Score=117.77 Aligned_cols=101 Identities=15% Similarity=0.129 Sum_probs=78.7
Q ss_pred CCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-----CCCc
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-----DGKY 220 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-----~~~f 220 (322)
++.+|||||||+|.++..+++. +.+|+|+|+|+.|++.|++++...+..+ +.|+++|+.++ +++|
T Consensus 38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~n--------v~~~~~d~~~l~~~~~~~~~ 109 (213)
T 2fca_A 38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQN--------VKLLNIDADTLTDVFEPGEV 109 (213)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSS--------EEEECCCGGGHHHHCCTTSC
T ss_pred CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCC--------EEEEeCCHHHHHhhcCcCCc
Confidence 4679999999999999999987 6799999999999999999988766532 38999998764 5789
Q ss_pred cEEEEcccccccCcch------HHHHHHHHHhccCCeEEEEE
Q 020710 221 DTVVCLDVLIHYPQSK------ADGMIAHLASLAEKRLILSF 256 (322)
Q Consensus 221 D~V~~~~~l~~~~~~~------~~~~l~~l~~~~~~~~il~~ 256 (322)
|.|++.....+..... ...+++++.+++++||.+.+
T Consensus 110 d~v~~~~~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~ 151 (213)
T 2fca_A 110 KRVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHF 151 (213)
T ss_dssp CEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEE
T ss_pred CEEEEECCCCCcCccccccccCcHHHHHHHHHHcCCCCEEEE
Confidence 9998765432222110 25789999998777766654
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=1.3e-13 Score=122.28 Aligned_cols=126 Identities=17% Similarity=0.166 Sum_probs=96.2
Q ss_pred CCCeEEEECCCcccchHHHHhcCC-EEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--CCCccEEE
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQGA-IVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL--DGKYDTVV 224 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~fD~V~ 224 (322)
++.+|||+|||+|.++..+++.+. +|+|+|+|+.|++.|++++...+..+++ +|+++|+.+. +++||+|+
T Consensus 125 ~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~n~~~n~~~~~v-------~~~~~D~~~~~~~~~fD~Vi 197 (278)
T 2frn_A 125 PDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRM-------SAYNMDNRDFPGENIADRIL 197 (278)
T ss_dssp TTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTE-------EEECSCTTTCCCCSCEEEEE
T ss_pred CCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcCCCceE-------EEEECCHHHhcccCCccEEE
Confidence 478999999999999999999877 5999999999999999999887766544 8999999876 67899999
Q ss_pred EcccccccCcchHHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCCCCCccccccCCHHHHHHHHHHCCCEEEE
Q 020710 225 CLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQKVGWKIRK 303 (322)
Q Consensus 225 ~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~vv~ 303 (322)
+... .. ...+++.+.+++++||++.+...... ... .....+++.++++++||++..
T Consensus 198 ~~~p----~~--~~~~l~~~~~~LkpgG~l~~~~~~~~--------~~~---------~~~~~~~i~~~~~~~G~~~~~ 253 (278)
T 2frn_A 198 MGYV----VR--THEFIPKALSIAKDGAIIHYHNTVPE--------KLM---------PREPFETFKRITKEYGYDVEK 253 (278)
T ss_dssp ECCC----SS--GGGGHHHHHHHEEEEEEEEEEEEEEG--------GGT---------TTTTHHHHHHHHHHTTCEEEE
T ss_pred ECCc----hh--HHHHHHHHHHHCCCCeEEEEEEeecc--------ccc---------cccHHHHHHHHHHHcCCeeEE
Confidence 8432 22 24778888888777776655322110 000 012467889999999999876
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.50 E-value=2.3e-13 Score=114.90 Aligned_cols=137 Identities=16% Similarity=0.157 Sum_probs=101.1
Q ss_pred CchhHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCC
Q 020710 129 GHSKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMP 206 (322)
Q Consensus 129 ~~~~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~ 206 (322)
..+..++.+++.+......++.+|||+|||+|.++..++.. +.+|+++|+|+.+++.++++....+..+ +
T Consensus 46 ~~~~~~~~~~~~l~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~--------v 117 (207)
T 1jsx_A 46 PNEMLVRHILDSIVVAPYLQGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLEN--------I 117 (207)
T ss_dssp --CHHHHHHHHHHHHGGGCCSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSS--------E
T ss_pred HHHHHHHHHHhhhhhhhhcCCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC--------e
Confidence 34445667777766431124679999999999999999986 6799999999999999999988766543 3
Q ss_pred ceEEcccccC--CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCCCCCcccccc
Q 020710 207 KFEVKDLESL--DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYL 284 (322)
Q Consensus 207 ~~~~~d~~~~--~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (322)
.+.++|+.+. +++||+|++..+ .+ ...+++.+.+++++||++.+....
T Consensus 118 ~~~~~d~~~~~~~~~~D~i~~~~~----~~--~~~~l~~~~~~L~~gG~l~~~~~~------------------------ 167 (207)
T 1jsx_A 118 EPVQSRVEEFPSEPPFDGVISRAF----AS--LNDMVSWCHHLPGEQGRFYALKGQ------------------------ 167 (207)
T ss_dssp EEEECCTTTSCCCSCEEEEECSCS----SS--HHHHHHHHTTSEEEEEEEEEEESS------------------------
T ss_pred EEEecchhhCCccCCcCEEEEecc----CC--HHHHHHHHHHhcCCCcEEEEEeCC------------------------
Confidence 8999999876 478999997542 33 568999999988888776653211
Q ss_pred CCHHHHHHHHHHCCCEEEEEe
Q 020710 285 HAEADVERALQKVGWKIRKRG 305 (322)
Q Consensus 285 ~~~~~~~~~l~~aGf~vv~~~ 305 (322)
...+++.+++. ||++++..
T Consensus 168 ~~~~~~~~~~~--g~~~~~~~ 186 (207)
T 1jsx_A 168 MPEDEIALLPE--EYQVESVV 186 (207)
T ss_dssp CCHHHHHTSCT--TEEEEEEE
T ss_pred CchHHHHHHhc--CCceeeee
Confidence 13456666665 89887644
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=8.8e-14 Score=123.67 Aligned_cols=125 Identities=21% Similarity=0.245 Sum_probs=94.1
Q ss_pred hhhhhcCchhHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc-CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCC
Q 020710 123 QLDIRLGHSKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ-GAIVSASDISAAMVAEARKKAEEELLADNGGE 201 (322)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~ 201 (322)
....++..+.+++.+++.+... ++.+|||+|||+|.++..+++. +++|+|+|+|+.+++.|++++...+..+++
T Consensus 101 ~lipr~~te~lv~~~l~~~~~~---~~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~v-- 175 (284)
T 1nv8_A 101 VFVPRPETEELVELALELIRKY---GIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRF-- 175 (284)
T ss_dssp SCCCCTTHHHHHHHHHHHHHHH---TCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSE--
T ss_pred ceecChhHHHHHHHHHHHhccc---CCCEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCce--
Confidence 3345555667778888877643 4679999999999999999988 889999999999999999999888766544
Q ss_pred CCCCCceEEcccccC-CCCc---cEEEEccccc-----------ccCcch------HHHHHHHHH-hccCCeEEEEEC
Q 020710 202 APVMPKFEVKDLESL-DGKY---DTVVCLDVLI-----------HYPQSK------ADGMIAHLA-SLAEKRLILSFA 257 (322)
Q Consensus 202 ~~~~~~~~~~d~~~~-~~~f---D~V~~~~~l~-----------~~~~~~------~~~~l~~l~-~~~~~~~il~~~ 257 (322)
+|+++|+.+. .++| |+|+++--.. |-|... -..+++++. +.+++||++.+.
T Consensus 176 -----~~~~~D~~~~~~~~f~~~D~IvsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e 248 (284)
T 1nv8_A 176 -----FVRKGEFLEPFKEKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLME 248 (284)
T ss_dssp -----EEEESSTTGGGGGGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEE
T ss_pred -----EEEECcchhhcccccCCCCEEEEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEE
Confidence 8999998774 5689 9999972211 333211 126788888 877666665554
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.49 E-value=2.1e-13 Score=111.29 Aligned_cols=116 Identities=11% Similarity=0.110 Sum_probs=87.0
Q ss_pred hcCchhHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCC
Q 020710 127 RLGHSKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMP 206 (322)
Q Consensus 127 ~~~~~~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~ 206 (322)
+.......+.+++.+... ..++.+|||+|||+|.++..+++.+.+|+|+|+|+.|++.+++++...+. + +
T Consensus 21 ~~~~~~~~~~~~~~~~~~-~~~~~~vLD~GcG~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--~-------~ 90 (171)
T 1ws6_A 21 RPSPVRLRKALFDYLRLR-YPRRGRFLDPFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLKENVRRTGL--G-------A 90 (171)
T ss_dssp CCCCHHHHHHHHHHHHHH-CTTCCEEEEETCSSCHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHTC--C-------C
T ss_pred CCCHHHHHHHHHHHHHhh-ccCCCeEEEeCCCcCHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHcCC--c-------e
Confidence 334445556677776642 11478999999999999999999988899999999999999999887654 2 3
Q ss_pred ceEEcccccC-------CCCccEEEEcccccccCcchHHHHHHHHH--hccCCeEEEEE
Q 020710 207 KFEVKDLESL-------DGKYDTVVCLDVLIHYPQSKADGMIAHLA--SLAEKRLILSF 256 (322)
Q Consensus 207 ~~~~~d~~~~-------~~~fD~V~~~~~l~~~~~~~~~~~l~~l~--~~~~~~~il~~ 256 (322)
+++++|+.+. .++||+|++...++ .. ...+++.+. +++++++++.+
T Consensus 91 ~~~~~d~~~~~~~~~~~~~~~D~i~~~~~~~--~~--~~~~~~~~~~~~~L~~gG~~~~ 145 (171)
T 1ws6_A 91 RVVALPVEVFLPEAKAQGERFTVAFMAPPYA--MD--LAALFGELLASGLVEAGGLYVL 145 (171)
T ss_dssp EEECSCHHHHHHHHHHTTCCEEEEEECCCTT--SC--TTHHHHHHHHHTCEEEEEEEEE
T ss_pred EEEeccHHHHHHhhhccCCceEEEEECCCCc--hh--HHHHHHHHHhhcccCCCcEEEE
Confidence 8999998763 23899999998765 33 235666665 77776665554
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.49 E-value=9.3e-14 Score=119.42 Aligned_cols=106 Identities=19% Similarity=0.062 Sum_probs=83.5
Q ss_pred chhHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceE
Q 020710 130 HSKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFE 209 (322)
Q Consensus 130 ~~~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~ 209 (322)
....+..+++.+.. .++.+|||||||+|.++..+++.+.+|+|+|+|+.+++.++++....+ . +.+.
T Consensus 55 ~~~~~~~~~~~~~~---~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~-~---------v~~~ 121 (231)
T 1vbf_A 55 ALNLGIFMLDELDL---HKGQKVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKLLSYYN-N---------IKLI 121 (231)
T ss_dssp CHHHHHHHHHHTTC---CTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHTTCS-S---------EEEE
T ss_pred CHHHHHHHHHhcCC---CCCCEEEEEcCCCCHHHHHHHHHcCEEEEEeCCHHHHHHHHHHHhhcC-C---------eEEE
Confidence 44555666666643 367899999999999999999999999999999999999999886554 1 2899
Q ss_pred EcccccC---CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEE
Q 020710 210 VKDLESL---DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSF 256 (322)
Q Consensus 210 ~~d~~~~---~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~ 256 (322)
++|+.+. +++||+|++..+++|+++ .+.+++++||++.+
T Consensus 122 ~~d~~~~~~~~~~fD~v~~~~~~~~~~~--------~~~~~L~pgG~l~~ 163 (231)
T 1vbf_A 122 LGDGTLGYEEEKPYDRVVVWATAPTLLC--------KPYEQLKEGGIMIL 163 (231)
T ss_dssp ESCGGGCCGGGCCEEEEEESSBBSSCCH--------HHHHTEEEEEEEEE
T ss_pred ECCcccccccCCCccEEEECCcHHHHHH--------HHHHHcCCCcEEEE
Confidence 9998763 578999999999999874 35566666654443
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.49 E-value=9.8e-14 Score=114.27 Aligned_cols=114 Identities=18% Similarity=0.172 Sum_probs=85.5
Q ss_pred hhHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcC-CEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceE
Q 020710 131 SKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQG-AIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFE 209 (322)
Q Consensus 131 ~~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~ 209 (322)
....+.+++.+... .++.+|||+|||+|.++..+++.+ .+|+|+|+|+.|++.+++++...+...++ .++
T Consensus 16 ~~~~~~~~~~l~~~--~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-------~~~ 86 (177)
T 2esr_A 16 DKVRGAIFNMIGPY--FNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRF-------TLL 86 (177)
T ss_dssp --CHHHHHHHHCSC--CCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGE-------EEE
T ss_pred HHHHHHHHHHHHhh--cCCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCCCce-------EEE
Confidence 34456677776532 357899999999999999999985 58999999999999999999877654333 899
Q ss_pred EcccccC----CCCccEEEEcccccccCcchHHHHHHHHH--hccCCeEEEEE
Q 020710 210 VKDLESL----DGKYDTVVCLDVLIHYPQSKADGMIAHLA--SLAEKRLILSF 256 (322)
Q Consensus 210 ~~d~~~~----~~~fD~V~~~~~l~~~~~~~~~~~l~~l~--~~~~~~~il~~ 256 (322)
.+|+.+. +++||+|++...++. .. ...+++.+. ++++++|++.+
T Consensus 87 ~~d~~~~~~~~~~~fD~i~~~~~~~~-~~--~~~~~~~l~~~~~L~~gG~l~~ 136 (177)
T 2esr_A 87 KMEAERAIDCLTGRFDLVFLDPPYAK-ET--IVATIEALAAKNLLSEQVMVVC 136 (177)
T ss_dssp CSCHHHHHHHBCSCEEEEEECCSSHH-HH--HHHHHHHHHHTTCEEEEEEEEE
T ss_pred ECcHHHhHHhhcCCCCEEEECCCCCc-ch--HHHHHHHHHhCCCcCCCcEEEE
Confidence 9998663 578999999876532 12 446677776 77777776654
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.49 E-value=4.2e-13 Score=114.73 Aligned_cols=100 Identities=18% Similarity=0.112 Sum_probs=82.2
Q ss_pred CCCeEEEECCCcccchHHHHhc---CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC----C---
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQ---GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL----D--- 217 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~----~--- 217 (322)
++.+|||||||+|..+..+++. +.+|+++|+|+.|++.|++++...+..+++ +++++|+.+. .
T Consensus 58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v-------~~~~~d~~~~l~~~~~~~ 130 (221)
T 3u81_A 58 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKV-------TILNGASQDLIPQLKKKY 130 (221)
T ss_dssp CCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGE-------EEEESCHHHHGGGTTTTS
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCce-------EEEECCHHHHHHHHHHhc
Confidence 4789999999999999999985 689999999999999999999888776544 8999997442 3
Q ss_pred --CCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEEC
Q 020710 218 --GKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFA 257 (322)
Q Consensus 218 --~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~ 257 (322)
++||+|++....+++.+ ...+++.+ +++++|+++.+.
T Consensus 131 ~~~~fD~V~~d~~~~~~~~--~~~~~~~~-~~LkpgG~lv~~ 169 (221)
T 3u81_A 131 DVDTLDMVFLDHWKDRYLP--DTLLLEKC-GLLRKGTVLLAD 169 (221)
T ss_dssp CCCCCSEEEECSCGGGHHH--HHHHHHHT-TCCCTTCEEEES
T ss_pred CCCceEEEEEcCCcccchH--HHHHHHhc-cccCCCeEEEEe
Confidence 68999999887777655 34677777 777777777664
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.48 E-value=9.3e-14 Score=117.20 Aligned_cols=114 Identities=13% Similarity=0.163 Sum_probs=84.9
Q ss_pred hhHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCC-EEEEEeCCHHHHHHHHHHhHHhhhc-cCCCCCCCCCce
Q 020710 131 SKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGA-IVSASDISAAMVAEARKKAEEELLA-DNGGEAPVMPKF 208 (322)
Q Consensus 131 ~~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~-~~~~~~~~~~~~ 208 (322)
....+.+++++... .++.+|||+|||+|.++..++..+. +|+|+|+|+.|++.|++++...+.. .+ +++
T Consensus 38 ~~~~~~l~~~l~~~--~~~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~-------v~~ 108 (201)
T 2ift_A 38 DRVKETLFNWLMPY--IHQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQ-------AEV 108 (201)
T ss_dssp CHHHHHHHHHHHHH--HTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTT-------EEE
T ss_pred HHHHHHHHHHHHHh--cCCCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHHhCCCccc-------eEE
Confidence 34445666666542 1468999999999999999888764 8999999999999999999877652 22 389
Q ss_pred EEcccccC-----CCC-ccEEEEcccccccCcchHHHHHHHH--HhccCCeEEEEE
Q 020710 209 EVKDLESL-----DGK-YDTVVCLDVLIHYPQSKADGMIAHL--ASLAEKRLILSF 256 (322)
Q Consensus 209 ~~~d~~~~-----~~~-fD~V~~~~~l~~~~~~~~~~~l~~l--~~~~~~~~il~~ 256 (322)
+++|+.+. +++ ||+|++...++ ..+ ...+++.+ .++++++|++.+
T Consensus 109 ~~~d~~~~~~~~~~~~~fD~I~~~~~~~-~~~--~~~~l~~~~~~~~LkpgG~l~i 161 (201)
T 2ift_A 109 INQSSLDFLKQPQNQPHFDVVFLDPPFH-FNL--AEQAISLLCENNWLKPNALIYV 161 (201)
T ss_dssp ECSCHHHHTTSCCSSCCEEEEEECCCSS-SCH--HHHHHHHHHHTTCEEEEEEEEE
T ss_pred EECCHHHHHHhhccCCCCCEEEECCCCC-Ccc--HHHHHHHHHhcCccCCCcEEEE
Confidence 99997653 467 99999988753 333 56888888 456766665544
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.7e-14 Score=127.79 Aligned_cols=145 Identities=13% Similarity=0.154 Sum_probs=88.1
Q ss_pred CCCeEEEECCCcccchHHHHhcCC-EEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccCC-CCccEEEE
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQGA-IVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESLD-GKYDTVVC 225 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~fD~V~~ 225 (322)
++.+|||||||||.++..+++.|+ +|+|||+|+.|++.+.++........+ .++...+.+.++ .+||+|+|
T Consensus 85 ~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~r~~~rv~~~~~-------~ni~~l~~~~l~~~~fD~v~~ 157 (291)
T 3hp7_A 85 EDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKLRQDDRVRSMEQ-------YNFRYAEPVDFTEGLPSFASI 157 (291)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHHHTCTTEEEECS-------CCGGGCCGGGCTTCCCSEEEE
T ss_pred cccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcccceecc-------cCceecchhhCCCCCCCEEEE
Confidence 567999999999999999999975 899999999999885442211000000 011112222233 34999999
Q ss_pred cccccccCcchHHHHHHHHHhccCCeEEEEE-CCChhhHHHHHHhhccCCCCCCccccccCCHHHHHHHHHHCCCEEEEE
Q 020710 226 LDVLIHYPQSKADGMIAHLASLAEKRLILSF-APKTFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQKVGWKIRKR 304 (322)
Q Consensus 226 ~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~vv~~ 304 (322)
..+++++ ..++.++++++++||.+.+ ..+.+-... ...+. .+.......+....+++.+++.++||++...
T Consensus 158 d~sf~sl-----~~vL~e~~rvLkpGG~lv~lvkPqfe~~~-~~~~~--~G~vrd~~~~~~~~~~v~~~~~~~Gf~v~~~ 229 (291)
T 3hp7_A 158 DVSFISL-----NLILPALAKILVDGGQVVALVKPQFEAGR-EQIGK--NGIVRESSIHEKVLETVTAFAVDYGFSVKGL 229 (291)
T ss_dssp CCSSSCG-----GGTHHHHHHHSCTTCEEEEEECGGGTSCG-GGCC---CCCCCCHHHHHHHHHHHHHHHHHTTEEEEEE
T ss_pred EeeHhhH-----HHHHHHHHHHcCcCCEEEEEECcccccCh-hhcCC--CCccCCHHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 8888765 3788888888766554333 222221000 00100 1111111222336788999999999998876
Q ss_pred eee
Q 020710 305 GLI 307 (322)
Q Consensus 305 ~~~ 307 (322)
...
T Consensus 230 ~~s 232 (291)
T 3hp7_A 230 DFS 232 (291)
T ss_dssp EEC
T ss_pred EEC
Confidence 543
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.48 E-value=1.8e-13 Score=113.40 Aligned_cols=118 Identities=14% Similarity=0.135 Sum_probs=88.9
Q ss_pred hcCchhHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcC-CEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCC
Q 020710 127 RLGHSKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQG-AIVSASDISAAMVAEARKKAEEELLADNGGEAPVM 205 (322)
Q Consensus 127 ~~~~~~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~ 205 (322)
++......+.+++.+... .++.+|||+|||+|.++..+++.+ .+|+|+|+|+.|++.+++++...+...++
T Consensus 25 rp~~~~~~~~~~~~l~~~--~~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~------ 96 (187)
T 2fhp_A 25 RPTTDKVKESIFNMIGPY--FDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKF------ 96 (187)
T ss_dssp CCCCHHHHHHHHHHHCSC--CSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGE------
T ss_pred CcCHHHHHHHHHHHHHhh--cCCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcce------
Confidence 444555666777777532 357899999999999999988885 58999999999999999999877654333
Q ss_pred CceEEcccccC-------CCCccEEEEcccccccCcchHHHHHHHH--HhccCCeEEEEE
Q 020710 206 PKFEVKDLESL-------DGKYDTVVCLDVLIHYPQSKADGMIAHL--ASLAEKRLILSF 256 (322)
Q Consensus 206 ~~~~~~d~~~~-------~~~fD~V~~~~~l~~~~~~~~~~~l~~l--~~~~~~~~il~~ 256 (322)
+++++|+.+. +++||+|++...++ ... ....++.+ .+++++++++.+
T Consensus 97 -~~~~~d~~~~~~~~~~~~~~fD~i~~~~~~~-~~~--~~~~~~~l~~~~~L~~gG~l~~ 152 (187)
T 2fhp_A 97 -EVRKMDANRALEQFYEEKLQFDLVLLDPPYA-KQE--IVSQLEKMLERQLLTNEAVIVC 152 (187)
T ss_dssp -EEEESCHHHHHHHHHHTTCCEEEEEECCCGG-GCC--HHHHHHHHHHTTCEEEEEEEEE
T ss_pred -EEEECcHHHHHHHHHhcCCCCCEEEECCCCC-chh--HHHHHHHHHHhcccCCCCEEEE
Confidence 8999998663 57899999987754 233 34666666 666777776654
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.47 E-value=1.1e-13 Score=122.50 Aligned_cols=122 Identities=15% Similarity=0.246 Sum_probs=94.4
Q ss_pred CCCCeEEEECCCcccchHHHHhc---CCEEEEEeCCHHHHHHHHHHhHHh-hhccCCCCCCCCCceEEcccccC--CCCc
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQ---GAIVSASDISAAMVAEARKKAEEE-LLADNGGEAPVMPKFEVKDLESL--DGKY 220 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~-~~~~~~~~~~~~~~~~~~d~~~~--~~~f 220 (322)
.++.+|||+|||+|.++..+++. +.+|+++|+|+.+++.+++++... +..+ +++.++|+.+. +++|
T Consensus 109 ~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~--------v~~~~~d~~~~~~~~~f 180 (275)
T 1yb2_A 109 RPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGN--------VRTSRSDIADFISDQMY 180 (275)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTT--------EEEECSCTTTCCCSCCE
T ss_pred CCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCc--------EEEEECchhccCcCCCc
Confidence 46789999999999999999987 789999999999999999998765 4321 38899998765 5689
Q ss_pred cEEEEcccccccCcchHHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCCCCCccccccCCHHHHHHHHHHCCCE
Q 020710 221 DTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQKVGWK 300 (322)
Q Consensus 221 D~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~ 300 (322)
|+|++ |++++. .+++++.+++++++++.+..... ...+++.+.+++.||+
T Consensus 181 D~Vi~-----~~~~~~--~~l~~~~~~LkpgG~l~i~~~~~-----------------------~~~~~~~~~l~~~Gf~ 230 (275)
T 1yb2_A 181 DAVIA-----DIPDPW--NHVQKIASMMKPGSVATFYLPNF-----------------------DQSEKTVLSLSASGMH 230 (275)
T ss_dssp EEEEE-----CCSCGG--GSHHHHHHTEEEEEEEEEEESSH-----------------------HHHHHHHHHSGGGTEE
T ss_pred cEEEE-----cCcCHH--HHHHHHHHHcCCCCEEEEEeCCH-----------------------HHHHHHHHHHHHCCCe
Confidence 99997 677754 89999999877777655432211 0135677788889998
Q ss_pred EEEEee
Q 020710 301 IRKRGL 306 (322)
Q Consensus 301 vv~~~~ 306 (322)
+++...
T Consensus 231 ~~~~~~ 236 (275)
T 1yb2_A 231 HLETVE 236 (275)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 877544
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.47 E-value=9.2e-14 Score=119.66 Aligned_cols=132 Identities=17% Similarity=0.087 Sum_probs=92.9
Q ss_pred CCCCCeEEEECCCcccchHHHHhc-C-CEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEccccc----C--C
Q 020710 146 SLKGIAVCDAGCGTGSLAIPLAKQ-G-AIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLES----L--D 217 (322)
Q Consensus 146 ~~~~~~VLDvGcG~G~~~~~la~~-~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~----~--~ 217 (322)
..++.+|||+|||+|.++..+++. + .+|+|+|+|+.|++.+++++... . ++.++.+|+.. . .
T Consensus 72 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~---~-------~v~~~~~d~~~~~~~~~~~ 141 (230)
T 1fbn_A 72 IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER---E-------NIIPILGDANKPQEYANIV 141 (230)
T ss_dssp CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC---T-------TEEEEECCTTCGGGGTTTS
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcC---C-------CeEEEECCCCCcccccccC
Confidence 346789999999999999999988 4 78999999999999999887543 1 13888999876 3 4
Q ss_pred CCccEEEEcccccccCcch-HHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCCCCCccccccCCHHHHHHHHHH
Q 020710 218 GKYDTVVCLDVLIHYPQSK-ADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQK 296 (322)
Q Consensus 218 ~~fD~V~~~~~l~~~~~~~-~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 296 (322)
++||+|+ ++++++. ...+++++.++++++|++.+.-... .... ..... ....+++. +|++
T Consensus 142 ~~~D~v~-----~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~----------~~~~-~~~~~--~~~~~~l~-~l~~ 202 (230)
T 1fbn_A 142 EKVDVIY-----EDVAQPNQAEILIKNAKWFLKKGGYGMIAIKAR----------SIDV-TKDPK--EIFKEQKE-ILEA 202 (230)
T ss_dssp CCEEEEE-----ECCCSTTHHHHHHHHHHHHEEEEEEEEEEEEGG----------GTCS-SSCHH--HHHHHHHH-HHHH
T ss_pred ccEEEEE-----EecCChhHHHHHHHHHHHhCCCCcEEEEEEecC----------CCCC-CCCHH--HhhHHHHH-HHHH
Confidence 6899999 4566542 3577999998887777665531000 0000 00001 11246787 8999
Q ss_pred CCCEEEEEee
Q 020710 297 VGWKIRKRGL 306 (322)
Q Consensus 297 aGf~vv~~~~ 306 (322)
+||++++...
T Consensus 203 ~Gf~~~~~~~ 212 (230)
T 1fbn_A 203 GGFKIVDEVD 212 (230)
T ss_dssp HTEEEEEEEE
T ss_pred CCCEEEEEEc
Confidence 9999887553
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.47 E-value=2.9e-13 Score=115.04 Aligned_cols=106 Identities=17% Similarity=0.094 Sum_probs=82.2
Q ss_pred hhHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcC---CEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCc
Q 020710 131 SKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQG---AIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPK 207 (322)
Q Consensus 131 ~~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~---~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~ 207 (322)
......+++.+.. .++.+|||||||+|.++..+++.+ .+|+++|+|+.+++.+++++...+..+ +.
T Consensus 63 ~~~~~~~~~~~~~---~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~--------v~ 131 (215)
T 2yxe_A 63 IHMVGMMCELLDL---KPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDN--------VI 131 (215)
T ss_dssp HHHHHHHHHHTTC---CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTT--------EE
T ss_pred HHHHHHHHHhhCC---CCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC--------eE
Confidence 4445566666643 367899999999999999999884 799999999999999999987765432 38
Q ss_pred eEEcccccC---CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEE
Q 020710 208 FEVKDLESL---DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILS 255 (322)
Q Consensus 208 ~~~~d~~~~---~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~ 255 (322)
+..+|+... +++||+|++..+++|+++ ++.++++++|.+.
T Consensus 132 ~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~--------~~~~~L~pgG~lv 174 (215)
T 2yxe_A 132 VIVGDGTLGYEPLAPYDRIYTTAAGPKIPE--------PLIRQLKDGGKLL 174 (215)
T ss_dssp EEESCGGGCCGGGCCEEEEEESSBBSSCCH--------HHHHTEEEEEEEE
T ss_pred EEECCcccCCCCCCCeeEEEECCchHHHHH--------HHHHHcCCCcEEE
Confidence 888987543 578999999999999873 4556665555443
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=1.3e-13 Score=118.59 Aligned_cols=143 Identities=17% Similarity=0.203 Sum_probs=106.7
Q ss_pred CCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--CCCccEE
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL--DGKYDTV 223 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~fD~V 223 (322)
++.+|||||||+|-++..++.. ..+|+++|+++.|++.+++++...+... .+.+.|+... .+.||+|
T Consensus 132 ~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~~---------~~~v~D~~~~~p~~~~Dva 202 (281)
T 3lcv_B 132 RPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVPH---------RTNVADLLEDRLDEPADVT 202 (281)
T ss_dssp CCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCCE---------EEEECCTTTSCCCSCCSEE
T ss_pred CCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCc---------eEEEeeecccCCCCCcchH
Confidence 4779999999999999999877 5689999999999999999998887765 8899997654 7899999
Q ss_pred EEcccccccCcchHHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCCCCCccccccCCHHHHHHHHHHCCCEEEE
Q 020710 224 VCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQKVGWKIRK 303 (322)
Q Consensus 224 ~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~vv~ 303 (322)
+++-+++|+.+.+....++-+..+-.+++++++...+.... .+.+. .. -.+.|++.+.+.|+.+-+
T Consensus 203 L~lkti~~Le~q~kg~g~~ll~aL~~~~vvVSfp~ksl~Gr-s~gm~----------~~---Y~~~~e~~~~~~g~~~~~ 268 (281)
T 3lcv_B 203 LLLKTLPCLETQQRGSGWEVIDIVNSPNIVVTFPTKSLGQR-SKGMF----------QN---YSQSFESQARERSCRIQR 268 (281)
T ss_dssp EETTCHHHHHHHSTTHHHHHHHHSSCSEEEEEEECC--------CHH----------HH---HHHHHHHHHHHHTCCEEE
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHhCCCCEEEeccchhhcCC-Ccchh----------hH---HHHHHHHHHHhcCCceee
Confidence 99999999987655566655555667777888865443210 00111 11 156899999999997776
Q ss_pred Eeeeecceeh
Q 020710 304 RGLITTQFYF 313 (322)
Q Consensus 304 ~~~~~~~~~f 313 (322)
.+..+.-+|+
T Consensus 269 ~~~~nEl~y~ 278 (281)
T 3lcv_B 269 LEIGNELIYV 278 (281)
T ss_dssp EEETTEEEEE
T ss_pred eeecCeeEEE
Confidence 6665544443
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=99.46 E-value=7e-14 Score=122.10 Aligned_cols=148 Identities=15% Similarity=0.070 Sum_probs=91.3
Q ss_pred CCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEccccc-----CC---
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLES-----LD--- 217 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-----~~--- 217 (322)
++.+|||+|||+|.++..++.. +.+|+|+|+|+.|++.|++++...+..+++ +++++|+.+ +.
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v-------~~~~~d~~~~~~~~~~~~~ 137 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLI-------KVVKVPQKTLLMDALKEES 137 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTE-------EEEECCTTCSSTTTSTTCC
T ss_pred CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccE-------EEEEcchhhhhhhhhhccc
Confidence 4679999999999999999876 789999999999999999999887765444 899998654 22
Q ss_pred -CCccEEEEcccccccCcc-------------hHHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCC--CCCCccc
Q 020710 218 -GKYDTVVCLDVLIHYPQS-------------KADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFP--GPSKATR 281 (322)
Q Consensus 218 -~~fD~V~~~~~l~~~~~~-------------~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 281 (322)
++||+|+++..+++...+ ....++..+.+++++|+.+.+.. .++........ +......
T Consensus 138 ~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~~-----~~~~~~~~~l~~~g~~~~~~ 212 (254)
T 2h00_A 138 EIIYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVK-----RIIHDSLQLKKRLRWYSCML 212 (254)
T ss_dssp SCCBSEEEECCCCC-------------------------CTTTTHHHHTHHHHHH-----HHHHHHHHHGGGBSCEEEEE
T ss_pred CCcccEEEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEEH-----HHHHHHHhcccceEEEEECC
Confidence 589999998766554310 01234555555554444332211 11111111110 0000111
Q ss_pred cccCCHHHHHHHHHHCCCEEEEEeee
Q 020710 282 AYLHAEADVERALQKVGWKIRKRGLI 307 (322)
Q Consensus 282 ~~~~~~~~~~~~l~~aGf~vv~~~~~ 307 (322)
......+++.++++++||+.++....
T Consensus 213 ~~~~~~~~~~~~l~~~Gf~~v~~~~~ 238 (254)
T 2h00_A 213 GKKCSLAPLKEELRIQGVPKVTYTEF 238 (254)
T ss_dssp SSTTSHHHHHHHHHHTTCSEEEEEEE
T ss_pred CChhHHHHHHHHHHHcCCCceEEEEE
Confidence 22234578999999999987765433
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=1.1e-12 Score=121.18 Aligned_cols=137 Identities=20% Similarity=0.202 Sum_probs=101.7
Q ss_pred hHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCC--EEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceE
Q 020710 132 KTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGA--IVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFE 209 (322)
Q Consensus 132 ~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~ 209 (322)
.+...++.+. . .++.+|||+|||+|.++..++..+. +|+|+|+|+.|++.|++++...++..++ +|.
T Consensus 205 ~la~~l~~~~-~---~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i-------~~~ 273 (373)
T 3tm4_A 205 SIANAMIELA-E---LDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKI-------KFI 273 (373)
T ss_dssp HHHHHHHHHH-T---CCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGC-------EEE
T ss_pred HHHHHHHHhh-c---CCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCce-------EEE
Confidence 3344455554 2 3678999999999999999999876 8999999999999999999988775444 999
Q ss_pred EcccccC---CCCccEEEEcccccccCc------chHHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCCCCCcc
Q 020710 210 VKDLESL---DGKYDTVVCLDVLIHYPQ------SKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKAT 280 (322)
Q Consensus 210 ~~d~~~~---~~~fD~V~~~~~l~~~~~------~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (322)
++|+.++ +++||+|+++..+..-.. .....+++.+++++++++++...
T Consensus 274 ~~D~~~~~~~~~~fD~Ii~npPyg~r~~~~~~~~~ly~~~~~~l~r~l~g~~~~i~~----------------------- 330 (373)
T 3tm4_A 274 QGDATQLSQYVDSVDFAISNLPYGLKIGKKSMIPDLYMKFFNELAKVLEKRGVFITT----------------------- 330 (373)
T ss_dssp ECCGGGGGGTCSCEEEEEEECCCC------CCHHHHHHHHHHHHHHHEEEEEEEEES-----------------------
T ss_pred ECChhhCCcccCCcCEEEECCCCCcccCcchhHHHHHHHHHHHHHHHcCCeEEEEEC-----------------------
Confidence 9999876 478999999765433210 11367888888877444444331
Q ss_pred ccccCCHHHHHHHHHHCCCEEEEEeee
Q 020710 281 RAYLHAEADVERALQKVGWKIRKRGLI 307 (322)
Q Consensus 281 ~~~~~~~~~~~~~l~~aGf~vv~~~~~ 307 (322)
+.+.+++.+.+.||++.+....
T Consensus 331 -----~~~~~~~~~~~~G~~~~~~~~~ 352 (373)
T 3tm4_A 331 -----EKKAIEEAIAENGFEIIHHRVI 352 (373)
T ss_dssp -----CHHHHHHHHHHTTEEEEEEEEE
T ss_pred -----CHHHHHHHHHHcCCEEEEEEEE
Confidence 3567888999999998875444
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=8.7e-14 Score=122.73 Aligned_cols=112 Identities=21% Similarity=0.260 Sum_probs=83.5
Q ss_pred CCCeEEEECCCccc----chHHHHhc------CCEEEEEeCCHHHHHHHHHHhHHhhh--------------------cc
Q 020710 148 KGIAVCDAGCGTGS----LAIPLAKQ------GAIVSASDISAAMVAEARKKAEEELL--------------------AD 197 (322)
Q Consensus 148 ~~~~VLDvGcG~G~----~~~~la~~------~~~v~gvD~s~~~l~~a~~~~~~~~~--------------------~~ 197 (322)
++.+|||+|||||. ++..|++. +++|+|+|+|+.|++.|++....... .+
T Consensus 105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~ 184 (274)
T 1af7_A 105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 184 (274)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence 35799999999998 55566654 36899999999999999986411000 00
Q ss_pred CCCCC---CCCCceEEcccccC----CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEECCC
Q 020710 198 NGGEA---PVMPKFEVKDLESL----DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPK 259 (322)
Q Consensus 198 ~~~~~---~~~~~~~~~d~~~~----~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~ 259 (322)
...+. ..++.|.++|+.+. .++||+|+|.++++|++++...++++++++.+++||++.+.+.
T Consensus 185 ~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~lg~s 253 (274)
T 1af7_A 185 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAGHS 253 (274)
T ss_dssp EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEECTT
T ss_pred ceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 00000 01348999998763 3789999999999999887678999999999999998887543
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=4.9e-13 Score=120.03 Aligned_cols=134 Identities=16% Similarity=0.207 Sum_probs=94.0
Q ss_pred CCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHh--hh-ccCCCCCCCCCceEEcccccC-----C
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEE--LL-ADNGGEAPVMPKFEVKDLESL-----D 217 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~--~~-~~~~~~~~~~~~~~~~d~~~~-----~ 217 (322)
++.+|||||||+|.++..+++. ..+|++||+|+.+++.+++++... .. ..+ ++++.+|+.+. +
T Consensus 95 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~-------v~~~~~D~~~~~~~~~~ 167 (304)
T 3bwc_A 95 KPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPR-------ATVRVGDGLAFVRQTPD 167 (304)
T ss_dssp SCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTT-------EEEEESCHHHHHHSSCT
T ss_pred CCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCc-------EEEEECcHHHHHHhccC
Confidence 5689999999999999999987 468999999999999999987532 11 222 38999997553 5
Q ss_pred CCccEEEEcccccccCcchH--HHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCCCCCccccccCCHHHHHHHHH
Q 020710 218 GKYDTVVCLDVLIHYPQSKA--DGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQ 295 (322)
Q Consensus 218 ~~fD~V~~~~~l~~~~~~~~--~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 295 (322)
++||+|++.....+.+...+ ..+++.++++++++|++.+.....+ + + ....+++.+.++
T Consensus 168 ~~fDvIi~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~----------~-------~--~~~~~~~~~~l~ 228 (304)
T 3bwc_A 168 NTYDVVIIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQGESIW----------L-------D--LELIEKMSRFIR 228 (304)
T ss_dssp TCEEEEEEECC---------CCHHHHHHHHHHEEEEEEEEEEECCTT----------T-------C--HHHHHHHHHHHH
T ss_pred CceeEEEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEecCCcc----------c-------c--hHHHHHHHHHHH
Confidence 78999999776655444323 5899999998888887765322110 0 0 013567889999
Q ss_pred HCCCEEEEEeee
Q 020710 296 KVGWKIRKRGLI 307 (322)
Q Consensus 296 ~aGf~vv~~~~~ 307 (322)
++||..+.....
T Consensus 229 ~~GF~~v~~~~~ 240 (304)
T 3bwc_A 229 ETGFASVQYALM 240 (304)
T ss_dssp HHTCSEEEEEEC
T ss_pred hCCCCcEEEEEe
Confidence 999988765443
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.5e-13 Score=127.04 Aligned_cols=102 Identities=24% Similarity=0.215 Sum_probs=85.8
Q ss_pred CCCCeEEEECCCcccchHHHHhcCC-EEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--CCCccEE
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQGA-IVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL--DGKYDTV 223 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~fD~V 223 (322)
.++.+|||||||+|.++..+++.|. +|+|+|+| .|++.|+++....+..+++ +++++|+.++ +++||+|
T Consensus 62 ~~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~a~~~~~~~~~~~~v-------~~~~~d~~~~~~~~~~D~I 133 (376)
T 3r0q_C 62 FEGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMADHARALVKANNLDHIV-------EVIEGSVEDISLPEKVDVI 133 (376)
T ss_dssp TTTCEEEEESCTTTHHHHHHHHTTCSEEEEEESS-TTHHHHHHHHHHTTCTTTE-------EEEESCGGGCCCSSCEEEE
T ss_pred CCCCEEEEeccCcCHHHHHHHhcCCCEEEEEccH-HHHHHHHHHHHHcCCCCeE-------EEEECchhhcCcCCcceEE
Confidence 4678999999999999999999987 89999999 9999999999888776554 8999999876 5899999
Q ss_pred EEcccccccCc-chHHHHHHHHHhccCCeEEEEE
Q 020710 224 VCLDVLIHYPQ-SKADGMIAHLASLAEKRLILSF 256 (322)
Q Consensus 224 ~~~~~l~~~~~-~~~~~~l~~l~~~~~~~~il~~ 256 (322)
++..+.+++.. .....+++.+.+++++||++.+
T Consensus 134 v~~~~~~~l~~e~~~~~~l~~~~~~LkpgG~li~ 167 (376)
T 3r0q_C 134 ISEWMGYFLLRESMFDSVISARDRWLKPTGVMYP 167 (376)
T ss_dssp EECCCBTTBTTTCTHHHHHHHHHHHEEEEEEEES
T ss_pred EEcChhhcccchHHHHHHHHHHHhhCCCCeEEEE
Confidence 99765555542 3367899999998888887754
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.46 E-value=3e-13 Score=113.29 Aligned_cols=103 Identities=20% Similarity=0.172 Sum_probs=80.2
Q ss_pred CCCCeEEEECCCcccchHHHHhc---CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC----CCC
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQ---GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL----DGK 219 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~~ 219 (322)
.++.+|||+|||+|.++..+++. ..+|+|+|+|+.+++.+++++...+...++ +++++|+.++ +++
T Consensus 21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v-------~~~~~d~~~~~~~~~~~ 93 (197)
T 3eey_A 21 KEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRV-------TLIKDGHQNMDKYIDCP 93 (197)
T ss_dssp CTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGE-------EEECSCGGGGGGTCCSC
T ss_pred CCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCe-------EEEECCHHHHhhhccCC
Confidence 35789999999999999999987 358999999999999999999887653333 8999997654 578
Q ss_pred ccEEEEcccccc------cC-cchHHHHHHHHHhccCCeEEEEE
Q 020710 220 YDTVVCLDVLIH------YP-QSKADGMIAHLASLAEKRLILSF 256 (322)
Q Consensus 220 fD~V~~~~~l~~------~~-~~~~~~~l~~l~~~~~~~~il~~ 256 (322)
||+|++...+.. .. ......+++++.++++++|.+.+
T Consensus 94 fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~ 137 (197)
T 3eey_A 94 VKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITV 137 (197)
T ss_dssp EEEEEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred ceEEEEcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEE
Confidence 999999875511 01 11245789999998877776554
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=7.8e-14 Score=128.11 Aligned_cols=143 Identities=14% Similarity=0.056 Sum_probs=98.7
Q ss_pred CCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccCCCCccEEEE
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESLDGKYDTVVC 225 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~fD~V~~ 225 (322)
+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++. . .++|+.+|+.+....||+|++
T Consensus 193 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~--------~v~~~~~d~~~~~~~~D~v~~ 257 (358)
T 1zg3_A 193 GLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTGN------E--------NLNFVGGDMFKSIPSADAVLL 257 (358)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCCCC------S--------SEEEEECCTTTCCCCCSEEEE
T ss_pred CCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhcccC------C--------CcEEEeCccCCCCCCceEEEE
Confidence 4679999999999999999987 568999999 7888776541 1 138999998764335999999
Q ss_pred cccccccCcchHHHHHHHHHhccCC---eE-EEEEC---CChhh---HHHHHHhhccCCCCCCccccccCCHHHHHHHHH
Q 020710 226 LDVLIHYPQSKADGMIAHLASLAEK---RL-ILSFA---PKTFY---YDLLKRVGELFPGPSKATRAYLHAEADVERALQ 295 (322)
Q Consensus 226 ~~~l~~~~~~~~~~~l~~l~~~~~~---~~-il~~~---~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 295 (322)
..++||++++....+++++++.+++ |+ +++.. +.... .........+... .......++.++++++++
T Consensus 258 ~~vlh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~--~~~~g~~~t~~e~~~ll~ 335 (358)
T 1zg3_A 258 KWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVML--TMFLGKERTKQEWEKLIY 335 (358)
T ss_dssp ESCGGGSCHHHHHHHHHHHHHHTGGGGGGCEEEEEECEECTTCSCHHHHHHHHHHHHHHH--HHHSCCCEEHHHHHHHHH
T ss_pred cccccCCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeccCCCCccchhhhHHHhhCHHHh--ccCCCCCCCHHHHHHHHH
Confidence 9999999997777999999998765 44 43322 11110 0001111110000 001122458999999999
Q ss_pred HCCCEEEEEeee
Q 020710 296 KVGWKIRKRGLI 307 (322)
Q Consensus 296 ~aGf~vv~~~~~ 307 (322)
++||++++....
T Consensus 336 ~aGf~~~~~~~~ 347 (358)
T 1zg3_A 336 DAGFSSYKITPI 347 (358)
T ss_dssp HTTCCEEEEEEE
T ss_pred HcCCCeeEEEec
Confidence 999999887553
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.45 E-value=3e-13 Score=114.14 Aligned_cols=115 Identities=12% Similarity=0.075 Sum_probs=85.2
Q ss_pred CchhHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCC-EEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCc
Q 020710 129 GHSKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGA-IVSASDISAAMVAEARKKAEEELLADNGGEAPVMPK 207 (322)
Q Consensus 129 ~~~~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~ 207 (322)
......+.+++++... .++.+|||+|||+|.++..++..+. +|+|+|+|+.|++.|++++...+.. + ++
T Consensus 37 ~~~~~~~~l~~~l~~~--~~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~~~~~~~~-~-------v~ 106 (202)
T 2fpo_A 37 TTDRVRETLFNWLAPV--IVDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAG-N-------AR 106 (202)
T ss_dssp -CHHHHHHHHHHHHHH--HTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCC-S-------EE
T ss_pred CHHHHHHHHHHHHHhh--cCCCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHcCCC-c-------EE
Confidence 3444556666666542 1468999999999999999888864 8999999999999999999877652 2 38
Q ss_pred eEEcccccC----CCCccEEEEcccccccCcchHHHHHHHHHh--ccCCeEEEEE
Q 020710 208 FEVKDLESL----DGKYDTVVCLDVLIHYPQSKADGMIAHLAS--LAEKRLILSF 256 (322)
Q Consensus 208 ~~~~d~~~~----~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~--~~~~~~il~~ 256 (322)
|+++|+.+. +++||+|++...++ ... ...+++.+.+ ++++++++.+
T Consensus 107 ~~~~D~~~~~~~~~~~fD~V~~~~p~~-~~~--~~~~l~~l~~~~~L~pgG~l~i 158 (202)
T 2fpo_A 107 VVNSNAMSFLAQKGTPHNIVFVDPPFR-RGL--LEETINLLEDNGWLADEALIYV 158 (202)
T ss_dssp EECSCHHHHHSSCCCCEEEEEECCSSS-TTT--HHHHHHHHHHTTCEEEEEEEEE
T ss_pred EEECCHHHHHhhcCCCCCEEEECCCCC-CCc--HHHHHHHHHhcCccCCCcEEEE
Confidence 999997652 47899999987743 333 4577888865 3666665544
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.45 E-value=7.4e-13 Score=113.82 Aligned_cols=147 Identities=12% Similarity=-0.001 Sum_probs=93.6
Q ss_pred hHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc---CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCce
Q 020710 132 KTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ---GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKF 208 (322)
Q Consensus 132 ~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~ 208 (322)
+....++..+......++.+|||+|||+|.++..+++. ..+|+|+|+|+.|++...+...+.. ++.+
T Consensus 60 kla~~ll~~l~~~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r~----------nv~~ 129 (232)
T 3id6_C 60 KLAGAILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRP----------NIFP 129 (232)
T ss_dssp HHHHHHHTTCSCCSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHCT----------TEEE
T ss_pred HHHHHHHhhhhhcCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcC----------CeEE
Confidence 44566666666444568899999999999999999886 4589999999999866555443321 1388
Q ss_pred EEcccccC------CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEEC-CChhhHHHHHHhhccCCCCCCccc
Q 020710 209 EVKDLESL------DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFA-PKTFYYDLLKRVGELFPGPSKATR 281 (322)
Q Consensus 209 ~~~d~~~~------~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 281 (322)
+++|+..+ .++||+|++.... ++ ....+...+.+.+++||.+.+. ..+- .+ .... ..
T Consensus 130 i~~Da~~~~~~~~~~~~~D~I~~d~a~---~~-~~~il~~~~~~~LkpGG~lvisik~~~-~d------~t~~-----~~ 193 (232)
T 3id6_C 130 LLADARFPQSYKSVVENVDVLYVDIAQ---PD-QTDIAIYNAKFFLKVNGDMLLVIKARS-ID------VTKD-----PK 193 (232)
T ss_dssp EECCTTCGGGTTTTCCCEEEEEECCCC---TT-HHHHHHHHHHHHEEEEEEEEEEEC--------------CC-----SS
T ss_pred EEcccccchhhhccccceEEEEecCCC---hh-HHHHHHHHHHHhCCCCeEEEEEEccCC-cc------cCCC-----HH
Confidence 89998653 4789999987543 33 1233445556577666655443 2110 00 0000 01
Q ss_pred cccCCHHHHHHHHHHCCCEEEEEeee
Q 020710 282 AYLHAEADVERALQKVGWKIRKRGLI 307 (322)
Q Consensus 282 ~~~~~~~~~~~~l~~aGf~vv~~~~~ 307 (322)
. ..++..+.|+++||++++....
T Consensus 194 e---~~~~~~~~L~~~gf~~~~~~~l 216 (232)
T 3id6_C 194 E---IYKTEVEKLENSNFETIQIINL 216 (232)
T ss_dssp S---STTHHHHHHHHTTEEEEEEEEC
T ss_pred H---HHHHHHHHHHHCCCEEEEEecc
Confidence 1 1235667788899999886543
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.45 E-value=3.6e-13 Score=124.27 Aligned_cols=114 Identities=22% Similarity=0.231 Sum_probs=87.0
Q ss_pred HHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcc
Q 020710 135 ENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKD 212 (322)
Q Consensus 135 ~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d 212 (322)
+.+++.+... ++.+|||+|||+|.++..+++. +.+|+|+|+|+.|++.+++++...+..++. +++|..+|
T Consensus 212 ~~ll~~l~~~---~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~-----~v~~~~~D 283 (375)
T 4dcm_A 212 RFFMQHLPEN---LEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALD-----RCEFMINN 283 (375)
T ss_dssp HHHHHTCCCS---CCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGG-----GEEEEECS
T ss_pred HHHHHhCccc---CCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCc-----eEEEEech
Confidence 3455555443 4589999999999999999998 689999999999999999999887754311 12779999
Q ss_pred cccC--CCCccEEEEcccccc---cCcchHHHHHHHHHhccCCeEEEEE
Q 020710 213 LESL--DGKYDTVVCLDVLIH---YPQSKADGMIAHLASLAEKRLILSF 256 (322)
Q Consensus 213 ~~~~--~~~fD~V~~~~~l~~---~~~~~~~~~l~~l~~~~~~~~il~~ 256 (322)
+.+. +++||+|+|+..+++ +.+.....+++++.+.+++||++.+
T Consensus 284 ~~~~~~~~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 332 (375)
T 4dcm_A 284 ALSGVEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYI 332 (375)
T ss_dssp TTTTCCTTCEEEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEE
T ss_pred hhccCCCCCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEE
Confidence 8765 578999999999875 3444456889999998776665544
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.44 E-value=9.6e-13 Score=114.81 Aligned_cols=130 Identities=19% Similarity=0.292 Sum_probs=96.8
Q ss_pred HHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc---CCEEEEEeCCHHHHHHHHHHhHHh-hhccCCCCCCCCCceEE
Q 020710 135 ENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ---GAIVSASDISAAMVAEARKKAEEE-LLADNGGEAPVMPKFEV 210 (322)
Q Consensus 135 ~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~-~~~~~~~~~~~~~~~~~ 210 (322)
..+++.+.. .++.+|||+|||+|.++..+++. +.+|+++|+|+.+++.+++++... +. .+ +.+..
T Consensus 86 ~~~~~~~~~---~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~-~~-------v~~~~ 154 (258)
T 2pwy_A 86 SAMVTLLDL---APGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQV-EN-------VRFHL 154 (258)
T ss_dssp HHHHHHTTC---CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCC-CC-------EEEEE
T ss_pred HHHHHHcCC---CCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCC-CC-------EEEEE
Confidence 344444443 46789999999999999999988 679999999999999999998776 52 22 38899
Q ss_pred cccccC---CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEE-CCChhhHHHHHHhhccCCCCCCccccccCC
Q 020710 211 KDLESL---DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSF-APKTFYYDLLKRVGELFPGPSKATRAYLHA 286 (322)
Q Consensus 211 ~d~~~~---~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (322)
+|+.+. +++||+|++ +++++. .+++++.+++++++.+.+ .+... .
T Consensus 155 ~d~~~~~~~~~~~D~v~~-----~~~~~~--~~l~~~~~~L~~gG~l~~~~~~~~------------------------~ 203 (258)
T 2pwy_A 155 GKLEEAELEEAAYDGVAL-----DLMEPW--KVLEKAALALKPDRFLVAYLPNIT------------------------Q 203 (258)
T ss_dssp SCGGGCCCCTTCEEEEEE-----ESSCGG--GGHHHHHHHEEEEEEEEEEESCHH------------------------H
T ss_pred CchhhcCCCCCCcCEEEE-----CCcCHH--HHHHHHHHhCCCCCEEEEEeCCHH------------------------H
Confidence 998765 478999997 566644 889999988776665544 22210 1
Q ss_pred HHHHHHHHHHCCCEEEEEee
Q 020710 287 EADVERALQKVGWKIRKRGL 306 (322)
Q Consensus 287 ~~~~~~~l~~aGf~vv~~~~ 306 (322)
..++.+.+++.||..++...
T Consensus 204 ~~~~~~~l~~~gf~~~~~~~ 223 (258)
T 2pwy_A 204 VLELVRAAEAHPFRLERVLE 223 (258)
T ss_dssp HHHHHHHHTTTTEEEEEEEE
T ss_pred HHHHHHHHHHCCCceEEEEE
Confidence 34667778889999777544
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=3.6e-13 Score=114.88 Aligned_cols=104 Identities=23% Similarity=0.223 Sum_probs=85.1
Q ss_pred CCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--CCCccEEE
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL--DGKYDTVV 224 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~fD~V~ 224 (322)
.++.+|||||||+|.++..+. .+.+|+|+|||+.|++.+++.+...+... .+.++|+... .++||+|+
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~-~~~~y~a~DId~~~i~~ar~~~~~~g~~~---------~~~v~D~~~~~~~~~~DvvL 173 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYER-GIASVWGCDIHQGLGDVITPFAREKDWDF---------TFALQDVLCAPPAEAGDLAL 173 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHT-TCSEEEEEESBHHHHHHHHHHHHHTTCEE---------EEEECCTTTSCCCCBCSEEE
T ss_pred CCCCeEEEecCCccHHHHHhc-cCCeEEEEeCCHHHHHHHHHHHHhcCCCc---------eEEEeecccCCCCCCcchHH
Confidence 357899999999999999888 66789999999999999999988777655 8899998654 78999999
Q ss_pred EcccccccCcchHHHHHHHHHhccCCeEEEEECCCh
Q 020710 225 CLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKT 260 (322)
Q Consensus 225 ~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~ 260 (322)
+.-++||+.+.+....++-+.++..+++++++....
T Consensus 174 llk~lh~LE~q~~~~~~~ll~aL~~~~vvVsfPtks 209 (253)
T 3frh_A 174 IFKLLPLLEREQAGSAMALLQSLNTPRMAVSFPTRS 209 (253)
T ss_dssp EESCHHHHHHHSTTHHHHHHHHCBCSEEEEEEECC-
T ss_pred HHHHHHHhhhhchhhHHHHHHHhcCCCEEEEcChHH
Confidence 999999987654445566666677888888886433
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=5.7e-13 Score=121.49 Aligned_cols=99 Identities=25% Similarity=0.256 Sum_probs=80.8
Q ss_pred CCCCeEEEECCCcccchHHHHhcCC-EEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC---CCCccE
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQGA-IVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL---DGKYDT 222 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~fD~ 222 (322)
.++.+|||||||+|.++..+++.|. +|+|+|+|+ |++.|++++...+...++ +++.+|+.++ +++||+
T Consensus 63 ~~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~-~~~~a~~~~~~~~~~~~i-------~~~~~d~~~~~~~~~~~D~ 134 (340)
T 2fyt_A 63 FKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSE-ILYQAMDIIRLNKLEDTI-------TLIKGKIEEVHLPVEKVDV 134 (340)
T ss_dssp TTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESST-HHHHHHHHHHHTTCTTTE-------EEEESCTTTSCCSCSCEEE
T ss_pred cCCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHH-HHHHHHHHHHHcCCCCcE-------EEEEeeHHHhcCCCCcEEE
Confidence 3578999999999999999999975 899999997 999999999887764433 8999999875 478999
Q ss_pred EEEccc---ccccCcchHHHHHHHHHhccCCeEEEE
Q 020710 223 VVCLDV---LIHYPQSKADGMIAHLASLAEKRLILS 255 (322)
Q Consensus 223 V~~~~~---l~~~~~~~~~~~l~~l~~~~~~~~il~ 255 (322)
|++..+ +.|..+ ...+++.+.+++++||++.
T Consensus 135 Ivs~~~~~~l~~~~~--~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 135 IISEWMGYFLLFESM--LDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp EEECCCBTTBTTTCH--HHHHHHHHHHHEEEEEEEE
T ss_pred EEEcCchhhccCHHH--HHHHHHHHHhhcCCCcEEE
Confidence 999773 433333 6689999999887777665
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.44 E-value=2.4e-13 Score=129.22 Aligned_cols=112 Identities=19% Similarity=0.163 Sum_probs=90.0
Q ss_pred HHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcC-CEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcc
Q 020710 134 VENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQG-AIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKD 212 (322)
Q Consensus 134 ~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d 212 (322)
.+.+++.+.. .++.+|||||||+|.++..+++.+ .+|+|+|+|+ |++.|++++...++..++ +++.+|
T Consensus 147 ~~~il~~l~~---~~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~-~l~~A~~~~~~~gl~~~v-------~~~~~d 215 (480)
T 3b3j_A 147 QRAILQNHTD---FKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRI-------VVIPGK 215 (480)
T ss_dssp HHHHHHTGGG---TTTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHH-HHHHHHHHHHHTTCTTTE-------EEEESC
T ss_pred HHHHHHhhhh---cCCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHH-HHHHHHHHHHHcCCCCcE-------EEEECc
Confidence 3444444433 257899999999999999999885 4899999998 999999999887765444 999999
Q ss_pred cccC--CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEE
Q 020710 213 LESL--DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSF 256 (322)
Q Consensus 213 ~~~~--~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~ 256 (322)
+.+. +++||+|++..+++|+..+.....+.+++++++++|++.+
T Consensus 216 ~~~~~~~~~fD~Ivs~~~~~~~~~e~~~~~l~~~~~~LkpgG~li~ 261 (480)
T 3b3j_A 216 VEEVSLPEQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFP 261 (480)
T ss_dssp TTTCCCSSCEEEEECCCCHHHHTCHHHHHHHHHGGGGEEEEEEEES
T ss_pred hhhCccCCCeEEEEEeCchHhcCcHHHHHHHHHHHHhcCCCCEEEE
Confidence 9875 5789999998888888776666778888888888777653
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.44 E-value=5e-13 Score=117.55 Aligned_cols=145 Identities=19% Similarity=0.203 Sum_probs=93.9
Q ss_pred HHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcc
Q 020710 135 ENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKD 212 (322)
Q Consensus 135 ~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d 212 (322)
+.+.+.+......++.+|||||||+|.++..+++. +.+|+|+|+|+.|++.++++... +.|..+|
T Consensus 72 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~-------------~~~~~~d 138 (269)
T 1p91_A 72 DAIVAQLRERLDDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQ-------------VTFCVAS 138 (269)
T ss_dssp HHHHHHHHHHSCTTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTT-------------SEEEECC
T ss_pred HHHHHHHHHhcCCCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhCCC-------------cEEEEcc
Confidence 34444444321135789999999999999999987 78999999999999999877521 2788999
Q ss_pred cccC---CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEE-CCChhhHHHHHHhhccCCCCCCccccccCCHH
Q 020710 213 LESL---DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSF-APKTFYYDLLKRVGELFPGPSKATRAYLHAEA 288 (322)
Q Consensus 213 ~~~~---~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (322)
+.++ +++||+|++..+. ..++++.+++++||.+.+ .+..... ..+...+... ...+ ..
T Consensus 139 ~~~~~~~~~~fD~v~~~~~~---------~~l~~~~~~L~pgG~l~~~~~~~~~~---~~~~~~~~~~---~~~~--~~- 200 (269)
T 1p91_A 139 SHRLPFSDTSMDAIIRIYAP---------CKAEELARVVKPGGWVITATPGPRHL---MELKGLIYNE---VHLH--AP- 200 (269)
T ss_dssp TTSCSBCTTCEEEEEEESCC---------CCHHHHHHHEEEEEEEEEEEECTTTT---HHHHTTTCSS---CCCC--CC-
T ss_pred hhhCCCCCCceeEEEEeCCh---------hhHHHHHHhcCCCcEEEEEEcCHHHH---HHHHHHhhcc---cccc--cc-
Confidence 8765 5789999986652 246777777766664443 3322111 1121222211 1111 00
Q ss_pred HHHHHHHHCCCEEEEEeeeecceeh
Q 020710 289 DVERALQKVGWKIRKRGLITTQFYF 313 (322)
Q Consensus 289 ~~~~~l~~aGf~vv~~~~~~~~~~f 313 (322)
..+..+||++++.+.......+
T Consensus 201 ---~~~~~~gf~~~~~~~~~~~~~~ 222 (269)
T 1p91_A 201 ---HAEQLEGFTLQQSAELCYPMRL 222 (269)
T ss_dssp ---CCCCCTTEEEEEEEEEEEEEEE
T ss_pred ---hhhHhcCCcEEEEEEEEEEEEc
Confidence 2445789999987777666554
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.44 E-value=9.8e-13 Score=113.38 Aligned_cols=98 Identities=10% Similarity=0.141 Sum_probs=81.5
Q ss_pred CCCeEEEECCCcccchHHHHh--cCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-----CCCc
Q 020710 148 KGIAVCDAGCGTGSLAIPLAK--QGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-----DGKY 220 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-----~~~f 220 (322)
++.+|||||||+|..+..+++ .+.+|+++|+|+.+++.|++++...++.+++ +|+++|+.+. +++|
T Consensus 71 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v-------~~~~~d~~~~~~~~~~~~f 143 (232)
T 3ntv_A 71 NVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQV-------RIIEGNALEQFENVNDKVY 143 (232)
T ss_dssp TCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTE-------EEEESCGGGCHHHHTTSCE
T ss_pred CCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcE-------EEEECCHHHHHHhhccCCc
Confidence 578999999999999999998 4789999999999999999999887765444 8999998653 4899
Q ss_pred cEEEEcccccccCcchHHHHHHHHHhccCCeEEEEEC
Q 020710 221 DTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFA 257 (322)
Q Consensus 221 D~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~ 257 (322)
|+|++... ......+++.+.+++++||++.+.
T Consensus 144 D~V~~~~~-----~~~~~~~l~~~~~~LkpgG~lv~d 175 (232)
T 3ntv_A 144 DMIFIDAA-----KAQSKKFFEIYTPLLKHQGLVITD 175 (232)
T ss_dssp EEEEEETT-----SSSHHHHHHHHGGGEEEEEEEEEE
T ss_pred cEEEEcCc-----HHHHHHHHHHHHHhcCCCeEEEEe
Confidence 99997533 223668999999998888888763
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=1.7e-13 Score=117.12 Aligned_cols=102 Identities=15% Similarity=0.098 Sum_probs=80.3
Q ss_pred CCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC------CCC
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL------DGK 219 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~------~~~ 219 (322)
++.+|||||||+|.++..+++. +.+|+|||+|+.|++.|++++...+..+ +.|+++|+.++ +++
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~n--------v~~~~~Da~~~l~~~~~~~~ 105 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSN--------LRVMCHDAVEVLHKMIPDNS 105 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSS--------EEEECSCHHHHHHHHSCTTC
T ss_pred CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCc--------EEEEECCHHHHHHHHcCCCC
Confidence 4679999999999999999987 5689999999999999999988776543 38999997652 689
Q ss_pred ccEEEEcccccccCcchH------HHHHHHHHhccCCeEEEEEC
Q 020710 220 YDTVVCLDVLIHYPQSKA------DGMIAHLASLAEKRLILSFA 257 (322)
Q Consensus 220 fD~V~~~~~l~~~~~~~~------~~~l~~l~~~~~~~~il~~~ 257 (322)
||.|++.....+...... ..+++.+.+++++||++.+.
T Consensus 106 ~d~v~~~~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~ 149 (218)
T 3dxy_A 106 LRMVQLFFPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMA 149 (218)
T ss_dssp EEEEEEESCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEE
T ss_pred hheEEEeCCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEE
Confidence 999998755433322211 25999999988777766553
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.43 E-value=2.1e-13 Score=117.56 Aligned_cols=142 Identities=11% Similarity=0.050 Sum_probs=93.2
Q ss_pred HHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc---CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcc
Q 020710 136 NTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ---GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKD 212 (322)
Q Consensus 136 ~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d 212 (322)
.++..+......++.+|||+|||+|.++..+++. +.+|+|+|+|+.|++.+.+++... .+ +.+.++|
T Consensus 65 ~~~~~l~~~~~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~---~~-------v~~~~~d 134 (233)
T 2ipx_A 65 AILGGVDQIHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR---TN-------IIPVIED 134 (233)
T ss_dssp HHHTTCSCCCCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC---TT-------EEEECSC
T ss_pred HHHhHHheecCCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc---CC-------eEEEEcc
Confidence 3333333333456789999999999999999987 378999999999988887777653 11 2889999
Q ss_pred cccC------CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCCCCCccccccCC
Q 020710 213 LESL------DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHA 286 (322)
Q Consensus 213 ~~~~------~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (322)
+.+. +++||+|++... ..+....+++++.+++++++++.+.-.. . . .... ..... .+
T Consensus 135 ~~~~~~~~~~~~~~D~V~~~~~----~~~~~~~~~~~~~~~LkpgG~l~i~~~~---~---~-~~~~----~~~~~-~~- 197 (233)
T 2ipx_A 135 ARHPHKYRMLIAMVDVIFADVA----QPDQTRIVALNAHTFLRNGGHFVISIKA---N---C-IDST----ASAEA-VF- 197 (233)
T ss_dssp TTCGGGGGGGCCCEEEEEECCC----CTTHHHHHHHHHHHHEEEEEEEEEEEEH---H---H-HCSS----SCHHH-HH-
T ss_pred cCChhhhcccCCcEEEEEEcCC----CccHHHHHHHHHHHHcCCCeEEEEEEcc---c---c-cccC----CCHHH-HH-
Confidence 8762 578999998544 1222346688888888777766552111 0 0 0000 00011 11
Q ss_pred HHHHHHHHHHCCCEEEEEe
Q 020710 287 EADVERALQKVGWKIRKRG 305 (322)
Q Consensus 287 ~~~~~~~l~~aGf~vv~~~ 305 (322)
.++ .++|+++||++++..
T Consensus 198 ~~~-~~~l~~~Gf~~~~~~ 215 (233)
T 2ipx_A 198 ASE-VKKMQQENMKPQEQL 215 (233)
T ss_dssp HHH-HHTTGGGTEEEEEEE
T ss_pred HHH-HHHHHHCCCceEEEE
Confidence 233 488899999998843
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.43 E-value=1.1e-12 Score=116.03 Aligned_cols=132 Identities=16% Similarity=0.122 Sum_probs=97.5
Q ss_pred HHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc---CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEc
Q 020710 135 ENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ---GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVK 211 (322)
Q Consensus 135 ~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (322)
..++..+. ..++.+|||+|||+|.++..+++. +.+|+++|+|+.+++.+++++...+...++ .+..+
T Consensus 102 ~~i~~~~~---~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v-------~~~~~ 171 (277)
T 1o54_A 102 SFIAMMLD---VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERV-------TIKVR 171 (277)
T ss_dssp HHHHHHTT---CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGE-------EEECC
T ss_pred HHHHHHhC---CCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCE-------EEEEC
Confidence 34444443 346789999999999999999987 578999999999999999998877653333 88899
Q ss_pred ccccC--CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCCCCCccccccCCHHH
Q 020710 212 DLESL--DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEAD 289 (322)
Q Consensus 212 d~~~~--~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (322)
|+.+. +++||+|++ +.+++. .+++++.+++++++.+.+...... ..++
T Consensus 172 d~~~~~~~~~~D~V~~-----~~~~~~--~~l~~~~~~L~pgG~l~~~~~~~~-----------------------~~~~ 221 (277)
T 1o54_A 172 DISEGFDEKDVDALFL-----DVPDPW--NYIDKCWEALKGGGRFATVCPTTN-----------------------QVQE 221 (277)
T ss_dssp CGGGCCSCCSEEEEEE-----CCSCGG--GTHHHHHHHEEEEEEEEEEESSHH-----------------------HHHH
T ss_pred CHHHcccCCccCEEEE-----CCcCHH--HHHHHHHHHcCCCCEEEEEeCCHH-----------------------HHHH
Confidence 98765 568999997 456644 888888888777776654322110 1346
Q ss_pred HHHHHHHCCCEEEEEee
Q 020710 290 VERALQKVGWKIRKRGL 306 (322)
Q Consensus 290 ~~~~l~~aGf~vv~~~~ 306 (322)
+.+.+++.||..++...
T Consensus 222 ~~~~l~~~gf~~~~~~~ 238 (277)
T 1o54_A 222 TLKKLQELPFIRIEVWE 238 (277)
T ss_dssp HHHHHHHSSEEEEEEEC
T ss_pred HHHHHHHCCCceeEEEE
Confidence 67778889998776443
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=9.1e-13 Score=112.61 Aligned_cols=99 Identities=15% Similarity=0.055 Sum_probs=81.6
Q ss_pred CCCeEEEECCCcccchHHHHhc---CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQ---GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
++.+|||||||+|..+..+++. +.+|+++|+++.+++.+++++...+..+++ +++++|+.+.
T Consensus 58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v-------~~~~~d~~~~~~~~~~~~ 130 (223)
T 3duw_A 58 GARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRV-------EVRTGLALDSLQQIENEK 130 (223)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTE-------EEEESCHHHHHHHHHHTT
T ss_pred CCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcE-------EEEEcCHHHHHHHHHhcC
Confidence 4789999999999999999988 789999999999999999999887776544 8999998653
Q ss_pred CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEECC
Q 020710 217 DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAP 258 (322)
Q Consensus 217 ~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~ 258 (322)
.++||+|++.... +....+++.+.+++++||++.+..
T Consensus 131 ~~~fD~v~~d~~~-----~~~~~~l~~~~~~L~pgG~lv~~~ 167 (223)
T 3duw_A 131 YEPFDFIFIDADK-----QNNPAYFEWALKLSRPGTVIIGDN 167 (223)
T ss_dssp CCCCSEEEECSCG-----GGHHHHHHHHHHTCCTTCEEEEES
T ss_pred CCCcCEEEEcCCc-----HHHHHHHHHHHHhcCCCcEEEEeC
Confidence 1679999986542 235688999999887777776643
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=5.1e-13 Score=122.28 Aligned_cols=101 Identities=21% Similarity=0.125 Sum_probs=83.9
Q ss_pred CCCeEEEECCCcccchHHHHhcCC-EEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC---CCCccEE
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQGA-IVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL---DGKYDTV 223 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~fD~V 223 (322)
++.+|||||||+|.++..+++.|. +|+|+|+| .|++.|+++....+..+++ +++++|+.++ +++||+|
T Consensus 66 ~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s-~~l~~a~~~~~~~~~~~~v-------~~~~~d~~~~~~~~~~fD~I 137 (349)
T 3q7e_A 66 KDKVVLDVGSGTGILCMFAAKAGARKVIGIECS-SISDYAVKIVKANKLDHVV-------TIIKGKVEEVELPVEKVDII 137 (349)
T ss_dssp TTCEEEEESCTTSHHHHHHHHTTCSEEEEEECS-THHHHHHHHHHHTTCTTTE-------EEEESCTTTCCCSSSCEEEE
T ss_pred CCCEEEEEeccchHHHHHHHHCCCCEEEEECcH-HHHHHHHHHHHHcCCCCcE-------EEEECcHHHccCCCCceEEE
Confidence 578999999999999999999976 89999999 5999999999888776554 9999999876 5899999
Q ss_pred EEcccccccC-cchHHHHHHHHHhccCCeEEEEE
Q 020710 224 VCLDVLIHYP-QSKADGMIAHLASLAEKRLILSF 256 (322)
Q Consensus 224 ~~~~~l~~~~-~~~~~~~l~~l~~~~~~~~il~~ 256 (322)
++..+.+++. .+....+++.+.+++++||++..
T Consensus 138 is~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~ 171 (349)
T 3q7e_A 138 ISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFP 171 (349)
T ss_dssp EECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred EEccccccccCchhHHHHHHHHHHhCCCCCEEcc
Confidence 9977654442 23367899999998888887653
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.43 E-value=3e-13 Score=117.84 Aligned_cols=103 Identities=20% Similarity=0.168 Sum_probs=79.7
Q ss_pred CCCeEEEECCCcccchHHHHhc----CCEEEEEeCCHHHHHHHHHHhHHh---hhccC----------------------
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQ----GAIVSASDISAAMVAEARKKAEEE---LLADN---------------------- 198 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~----~~~v~gvD~s~~~l~~a~~~~~~~---~~~~~---------------------- 198 (322)
++.+|||+|||+|.++..+++. +.+|+|+|+|+.|++.|++++... ++.++
T Consensus 51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (250)
T 1o9g_A 51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQA 130 (250)
T ss_dssp SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhhh
Confidence 4679999999999999999876 578999999999999999887655 43221
Q ss_pred ---CCCCCCCCc-------------eEEcccccC-------C-CCccEEEEcccccccCc-------chHHHHHHHHHhc
Q 020710 199 ---GGEAPVMPK-------------FEVKDLESL-------D-GKYDTVVCLDVLIHYPQ-------SKADGMIAHLASL 247 (322)
Q Consensus 199 ---~~~~~~~~~-------------~~~~d~~~~-------~-~~fD~V~~~~~l~~~~~-------~~~~~~l~~l~~~ 247 (322)
+ . |.++|+.+. . ++||+|+|+..+++..+ +....+++++.++
T Consensus 131 ~~~v-------~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~ 203 (250)
T 1o9g_A 131 ARRL-------RERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASA 203 (250)
T ss_dssp HHHH-------HHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHH
T ss_pred hhhh-------hhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHh
Confidence 1 5 899998663 2 38999999887766543 3356889999998
Q ss_pred cCCeEEEEEC
Q 020710 248 AEKRLILSFA 257 (322)
Q Consensus 248 ~~~~~il~~~ 257 (322)
+++||++.+.
T Consensus 204 LkpgG~l~~~ 213 (250)
T 1o9g_A 204 LPAHAVIAVT 213 (250)
T ss_dssp SCTTCEEEEE
T ss_pred cCCCcEEEEe
Confidence 8766665553
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=99.42 E-value=1.7e-12 Score=117.77 Aligned_cols=111 Identities=14% Similarity=0.063 Sum_probs=82.7
Q ss_pred HHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhcc-CCCCCCCCCceEEccc
Q 020710 135 ENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLAD-NGGEAPVMPKFEVKDL 213 (322)
Q Consensus 135 ~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~-~~~~~~~~~~~~~~d~ 213 (322)
..+.+.+... .++.+|||+|||+|.++..+++.|++|++||+|+.|++.|++++...++.+ ++ +|+++|+
T Consensus 142 ~~l~~~~~~~--~~~~~VLDlgcGtG~~sl~la~~ga~V~~VD~s~~al~~a~~n~~~~gl~~~~v-------~~i~~D~ 212 (332)
T 2igt_A 142 EWLKNAVETA--DRPLKVLNLFGYTGVASLVAAAAGAEVTHVDASKKAIGWAKENQVLAGLEQAPI-------RWICEDA 212 (332)
T ss_dssp HHHHHHHHHS--SSCCEEEEETCTTCHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHTCTTSCE-------EEECSCH
T ss_pred HHHHHHHHhc--CCCCcEEEcccccCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCCccce-------EEEECcH
Confidence 3455555422 246799999999999999999998899999999999999999998877653 23 8999998
Q ss_pred ccC-------CCCccEEEEcccccccC--------cchHHHHHHHHHhccCCeEEE
Q 020710 214 ESL-------DGKYDTVVCLDVLIHYP--------QSKADGMIAHLASLAEKRLIL 254 (322)
Q Consensus 214 ~~~-------~~~fD~V~~~~~l~~~~--------~~~~~~~l~~l~~~~~~~~il 254 (322)
.+. .++||+|++........ .+....+++.+.+++++++++
T Consensus 213 ~~~l~~~~~~~~~fD~Ii~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~l 268 (332)
T 2igt_A 213 MKFIQREERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALG 268 (332)
T ss_dssp HHHHHHHHHHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCE
T ss_pred HHHHHHHHhcCCCceEEEECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEE
Confidence 664 46899999954311110 112568888888887666653
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.42 E-value=5.1e-13 Score=120.67 Aligned_cols=106 Identities=17% Similarity=0.121 Sum_probs=82.5
Q ss_pred hHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCC---EEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCce
Q 020710 132 KTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGA---IVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKF 208 (322)
Q Consensus 132 ~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~ 208 (322)
.....+++.+.. .++.+|||||||+|.++..+++.+. +|+|+|+|+.+++.|++++...+..+ +++
T Consensus 62 ~~~~~l~~~l~~---~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~--------v~~ 130 (317)
T 1dl5_A 62 SLMALFMEWVGL---DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIEN--------VIF 130 (317)
T ss_dssp HHHHHHHHHTTC---CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCS--------EEE
T ss_pred HHHHHHHHhcCC---CCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCC--------eEE
Confidence 445566666653 3678999999999999999998744 59999999999999999998776543 389
Q ss_pred EEcccccC---CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEE
Q 020710 209 EVKDLESL---DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSF 256 (322)
Q Consensus 209 ~~~d~~~~---~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~ 256 (322)
.++|+.+. +++||+|++..+++|+++ .+.+++++||++.+
T Consensus 131 ~~~d~~~~~~~~~~fD~Iv~~~~~~~~~~--------~~~~~LkpgG~lvi 173 (317)
T 1dl5_A 131 VCGDGYYGVPEFSPYDVIFVTVGVDEVPE--------TWFTQLKEGGRVIV 173 (317)
T ss_dssp EESCGGGCCGGGCCEEEEEECSBBSCCCH--------HHHHHEEEEEEEEE
T ss_pred EECChhhccccCCCeEEEEEcCCHHHHHH--------HHHHhcCCCcEEEE
Confidence 99998774 578999999999999873 34455555554433
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.1e-12 Score=114.37 Aligned_cols=99 Identities=8% Similarity=0.005 Sum_probs=81.2
Q ss_pred CCCeEEEECCCcccchHHHHhc---CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC------CC
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQ---GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL------DG 218 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~------~~ 218 (322)
++.+|||||||+|..+..+++. +.+|+++|+|+.+++.|++++...+..+++ +++++|+.+. .+
T Consensus 63 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v-------~~~~~d~~~~l~~~~~~~ 135 (248)
T 3tfw_A 63 QAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRV-------TLREGPALQSLESLGECP 135 (248)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTE-------EEEESCHHHHHHTCCSCC
T ss_pred CCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcE-------EEEEcCHHHHHHhcCCCC
Confidence 4789999999999999999987 679999999999999999999888776444 8999998653 24
Q ss_pred CccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEECC
Q 020710 219 KYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAP 258 (322)
Q Consensus 219 ~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~ 258 (322)
+||+|++... .+....+++++.+++++||++.+..
T Consensus 136 ~fD~V~~d~~-----~~~~~~~l~~~~~~LkpGG~lv~~~ 170 (248)
T 3tfw_A 136 AFDLIFIDAD-----KPNNPHYLRWALRYSRPGTLIIGDN 170 (248)
T ss_dssp CCSEEEECSC-----GGGHHHHHHHHHHTCCTTCEEEEEC
T ss_pred CeEEEEECCc-----hHHHHHHHHHHHHhcCCCeEEEEeC
Confidence 8999998542 2335688999999888777776643
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.41 E-value=3.4e-13 Score=123.11 Aligned_cols=112 Identities=18% Similarity=0.244 Sum_probs=88.8
Q ss_pred HHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcC--CEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEc
Q 020710 134 VENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQG--AIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVK 211 (322)
Q Consensus 134 ~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (322)
.+.+++.+... ++.+|||+|||+|.++..+++.+ .+|+++|+|+.|++.+++++...+... .+..+
T Consensus 185 ~~~ll~~l~~~---~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~---------~~~~~ 252 (343)
T 2pjd_A 185 SQLLLSTLTPH---TKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEG---------EVFAS 252 (343)
T ss_dssp HHHHHHHSCTT---CCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCCC---------EEEEC
T ss_pred HHHHHHhcCcC---CCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCC---------EEEEc
Confidence 45556666432 46799999999999999999885 589999999999999999998766543 78888
Q ss_pred ccccC-CCCccEEEEccccccc---CcchHHHHHHHHHhccCCeEEEEEC
Q 020710 212 DLESL-DGKYDTVVCLDVLIHY---PQSKADGMIAHLASLAEKRLILSFA 257 (322)
Q Consensus 212 d~~~~-~~~fD~V~~~~~l~~~---~~~~~~~~l~~l~~~~~~~~il~~~ 257 (322)
|+.+. +++||+|+|+..+|+- ..+....+++++.+++++||.+.+.
T Consensus 253 d~~~~~~~~fD~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 302 (343)
T 2pjd_A 253 NVFSEVKGRFDMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIV 302 (343)
T ss_dssp STTTTCCSCEEEEEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred cccccccCCeeEEEECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 88665 7899999999998762 2333678999999988777766543
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.40 E-value=9.8e-13 Score=112.49 Aligned_cols=99 Identities=17% Similarity=0.133 Sum_probs=81.8
Q ss_pred CCCeEEEECCCcccchHHHHhc---CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC----C---
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQ---GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL----D--- 217 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~----~--- 217 (322)
++.+|||||||+|..+..+++. +.+|+++|+|+.+++.+++++...+..+++ +++++|+.+. .
T Consensus 64 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v-------~~~~~d~~~~~~~~~~~~ 136 (225)
T 3tr6_A 64 QAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKI-------GLRLSPAKDTLAELIHAG 136 (225)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTE-------EEEESCHHHHHHHHHTTT
T ss_pred CCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCce-------EEEeCCHHHHHHHhhhcc
Confidence 4679999999999999999987 789999999999999999999888776544 8999998553 2
Q ss_pred --CCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEECC
Q 020710 218 --GKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAP 258 (322)
Q Consensus 218 --~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~ 258 (322)
++||+|++... ......+++.+.+++++||++.+..
T Consensus 137 ~~~~fD~v~~~~~-----~~~~~~~l~~~~~~L~pgG~lv~~~ 174 (225)
T 3tr6_A 137 QAWQYDLIYIDAD-----KANTDLYYEESLKLLREGGLIAVDN 174 (225)
T ss_dssp CTTCEEEEEECSC-----GGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred CCCCccEEEECCC-----HHHHHHHHHHHHHhcCCCcEEEEeC
Confidence 79999996542 2335688999999888888877643
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.40 E-value=1e-12 Score=112.53 Aligned_cols=99 Identities=10% Similarity=0.070 Sum_probs=81.1
Q ss_pred CCeEEEECCCcccchHHHHhc---CCEEEEEeCCHHHHHHHHHHhHHhhhc-cCCCCCCCCCceEEcccccC-----CCC
Q 020710 149 GIAVCDAGCGTGSLAIPLAKQ---GAIVSASDISAAMVAEARKKAEEELLA-DNGGEAPVMPKFEVKDLESL-----DGK 219 (322)
Q Consensus 149 ~~~VLDvGcG~G~~~~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~-~~~~~~~~~~~~~~~d~~~~-----~~~ 219 (322)
+.+|||||||+|..+..+++. +.+|+++|+|+.+++.|++++...+.. .++ +++++|+.+. +++
T Consensus 57 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i-------~~~~gda~~~l~~~~~~~ 129 (221)
T 3dr5_A 57 STGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRV-------RFLLSRPLDVMSRLANDS 129 (221)
T ss_dssp CCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGE-------EEECSCHHHHGGGSCTTC
T ss_pred CCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcE-------EEEEcCHHHHHHHhcCCC
Confidence 449999999999999999985 679999999999999999999987765 444 8999987543 589
Q ss_pred ccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEECCC
Q 020710 220 YDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPK 259 (322)
Q Consensus 220 fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~ 259 (322)
||+|++.... .....+++.+.+++++||++.+..-
T Consensus 130 fD~V~~d~~~-----~~~~~~l~~~~~~LkpGG~lv~dn~ 164 (221)
T 3dr5_A 130 YQLVFGQVSP-----MDLKALVDAAWPLLRRGGALVLADA 164 (221)
T ss_dssp EEEEEECCCT-----TTHHHHHHHHHHHEEEEEEEEETTT
T ss_pred cCeEEEcCcH-----HHHHHHHHHHHHHcCCCcEEEEeCC
Confidence 9999986432 2255789999999988998887543
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=1.1e-12 Score=120.42 Aligned_cols=113 Identities=11% Similarity=0.047 Sum_probs=83.5
Q ss_pred hHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc-CCE-EEEEeCCHHHHHHHHHHhH-------Hhhhc-cCCCC
Q 020710 132 KTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ-GAI-VSASDISAAMVAEARKKAE-------EELLA-DNGGE 201 (322)
Q Consensus 132 ~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~-~~~-v~gvD~s~~~l~~a~~~~~-------~~~~~-~~~~~ 201 (322)
..+..+++.+. ..++.+|||||||+|..+..++.. ++. |+|||+|+.|++.|+++.. ..++. .+
T Consensus 160 ~~i~~il~~l~---l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~r--- 233 (438)
T 3uwp_A 160 DLVAQMIDEIK---MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAE--- 233 (438)
T ss_dssp HHHHHHHHHHC---CCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCE---
T ss_pred HHHHHHHHhcC---CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCC---
Confidence 34455555554 347889999999999999999865 664 9999999999999987543 22321 22
Q ss_pred CCCCCceEEcccccCC-----CCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEEC
Q 020710 202 APVMPKFEVKDLESLD-----GKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFA 257 (322)
Q Consensus 202 ~~~~~~~~~~d~~~~~-----~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~ 257 (322)
++|+++|+.+++ ..||+|+++..+ +.++ ....|+++.+.+++|+.|++.
T Consensus 234 ----Vefi~GD~~~lp~~d~~~~aDVVf~Nn~~-F~pd--l~~aL~Ei~RvLKPGGrIVss 287 (438)
T 3uwp_A 234 ----YTLERGDFLSEEWRERIANTSVIFVNNFA-FGPE--VDHQLKERFANMKEGGRIVSS 287 (438)
T ss_dssp ----EEEEECCTTSHHHHHHHHTCSEEEECCTT-CCHH--HHHHHHHHHTTSCTTCEEEES
T ss_pred ----eEEEECcccCCccccccCCccEEEEcccc-cCch--HHHHHHHHHHcCCCCcEEEEe
Confidence 399999998862 579999998775 4444 667888888887777666553
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=99.39 E-value=2.3e-12 Score=116.95 Aligned_cols=100 Identities=25% Similarity=0.251 Sum_probs=81.3
Q ss_pred CCCeEEEECCCcccchHHHHhcCC-EEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC---CCCccEE
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQGA-IVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL---DGKYDTV 223 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~fD~V 223 (322)
++.+|||||||+|.++..+++.|. +|+|+|+| .|++.|++++...+..+++ +++.+|+.++ +++||+|
T Consensus 38 ~~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s-~~~~~a~~~~~~~~~~~~i-------~~~~~d~~~~~~~~~~~D~I 109 (328)
T 1g6q_1 38 KDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMS-SIIEMAKELVELNGFSDKI-------TLLRGKLEDVHLPFPKVDII 109 (328)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTCCSEEEEEESS-THHHHHHHHHHHTTCTTTE-------EEEESCTTTSCCSSSCEEEE
T ss_pred CCCEEEEecCccHHHHHHHHHCCCCEEEEEChH-HHHHHHHHHHHHcCCCCCE-------EEEECchhhccCCCCcccEE
Confidence 478999999999999999999876 89999999 5999999999887765544 8999998876 3789999
Q ss_pred EEcccccccC-cchHHHHHHHHHhccCCeEEEE
Q 020710 224 VCLDVLIHYP-QSKADGMIAHLASLAEKRLILS 255 (322)
Q Consensus 224 ~~~~~l~~~~-~~~~~~~l~~l~~~~~~~~il~ 255 (322)
++..+.+++. ......++..+.+++++||++.
T Consensus 110 vs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 142 (328)
T 1g6q_1 110 ISEWMGYFLLYESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp EECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred EEeCchhhcccHHHHHHHHHHHHhhcCCCeEEE
Confidence 9986544443 2235688999988887777664
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.39 E-value=1.6e-12 Score=110.42 Aligned_cols=98 Identities=15% Similarity=-0.004 Sum_probs=72.6
Q ss_pred CCCCCeEEEECCCcccchHHHHhcC--CEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC------C
Q 020710 146 SLKGIAVCDAGCGTGSLAIPLAKQG--AIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL------D 217 (322)
Q Consensus 146 ~~~~~~VLDvGcG~G~~~~~la~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~------~ 217 (322)
..++.+|||+|||+|..+..+++.. .+|+|+|+|+.|++.+.++..... + +.++++|+... .
T Consensus 55 ~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~~---~-------v~~~~~d~~~~~~~~~~~ 124 (210)
T 1nt2_A 55 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERN---N-------IIPLLFDASKPWKYSGIV 124 (210)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCS---S-------EEEECSCTTCGGGTTTTC
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcCC---C-------eEEEEcCCCCchhhcccc
Confidence 3467899999999999999998873 689999999999887766654321 1 26777887652 5
Q ss_pred CCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEEC
Q 020710 218 GKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFA 257 (322)
Q Consensus 218 ~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~ 257 (322)
++||+|+|.. .. ......+++++++++++||.+.+.
T Consensus 125 ~~fD~V~~~~-~~---~~~~~~~l~~~~r~LkpgG~l~i~ 160 (210)
T 1nt2_A 125 EKVDLIYQDI-AQ---KNQIEILKANAEFFLKEKGEVVIM 160 (210)
T ss_dssp CCEEEEEECC-CS---TTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cceeEEEEec-cC---hhHHHHHHHHHHHHhCCCCEEEEE
Confidence 7899999872 21 122345689999988887766553
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.6e-12 Score=114.13 Aligned_cols=102 Identities=18% Similarity=0.193 Sum_probs=79.6
Q ss_pred CCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHH---hhhccCCCCCCCCCceEEcccccC------
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEE---ELLADNGGEAPVMPKFEVKDLESL------ 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~---~~~~~~~~~~~~~~~~~~~d~~~~------ 216 (322)
++.+|||+|||+|.++..++++ +.+|+|+|+++.+++.|++++.. .++.+++ .++++|+.+.
T Consensus 36 ~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v-------~~~~~D~~~~~~~~~~ 108 (260)
T 2ozv_A 36 RACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARI-------EVLEADVTLRAKARVE 108 (260)
T ss_dssp SCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGE-------EEEECCTTCCHHHHHH
T ss_pred CCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceE-------EEEeCCHHHHhhhhhh
Confidence 5679999999999999999988 46899999999999999999877 6665444 8999998765
Q ss_pred ----CCCccEEEEcccccc----------------cCcchHHHHHHHHHhccCCeEEEEE
Q 020710 217 ----DGKYDTVVCLDVLIH----------------YPQSKADGMIAHLASLAEKRLILSF 256 (322)
Q Consensus 217 ----~~~fD~V~~~~~l~~----------------~~~~~~~~~l~~l~~~~~~~~il~~ 256 (322)
+++||+|+++..+.. .....+..+++.+.++++++|.+.+
T Consensus 109 ~~~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~ 168 (260)
T 2ozv_A 109 AGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSL 168 (260)
T ss_dssp TTCCTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEE
T ss_pred hccCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEE
Confidence 578999999844322 1222367889999998877776554
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.5e-12 Score=110.24 Aligned_cols=97 Identities=18% Similarity=0.133 Sum_probs=79.7
Q ss_pred CCCeEEEECCCcccchHHHHhc---CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC----CCCc
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQ---GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL----DGKY 220 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~~f 220 (322)
++.+|||||||+|..+..+++. +.+|+++|+|+.+++.|++++...+..+++ +++++|+.+. ++ |
T Consensus 56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v-------~~~~~d~~~~~~~~~~-f 127 (210)
T 3c3p_A 56 QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRV-------ELQVGDPLGIAAGQRD-I 127 (210)
T ss_dssp CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGE-------EEEESCHHHHHTTCCS-E
T ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceE-------EEEEecHHHHhccCCC-C
Confidence 4679999999999999999987 679999999999999999999887765544 8999997543 46 9
Q ss_pred cEEEEcccccccCcchHHHHHHHHHhccCCeEEEEEC
Q 020710 221 DTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFA 257 (322)
Q Consensus 221 D~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~ 257 (322)
|+|++... . .....+++.+.+++++||++.+.
T Consensus 128 D~v~~~~~---~--~~~~~~l~~~~~~LkpgG~lv~~ 159 (210)
T 3c3p_A 128 DILFMDCD---V--FNGADVLERMNRCLAKNALLIAV 159 (210)
T ss_dssp EEEEEETT---T--SCHHHHHHHHGGGEEEEEEEEEE
T ss_pred CEEEEcCC---h--hhhHHHHHHHHHhcCCCeEEEEE
Confidence 99998632 2 23568999999998888877764
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.38 E-value=2.9e-12 Score=110.26 Aligned_cols=108 Identities=15% Similarity=0.107 Sum_probs=85.7
Q ss_pred HHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcc
Q 020710 135 ENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKD 212 (322)
Q Consensus 135 ~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d 212 (322)
..+...+... ++.+|||||||+|..+..+++. +.+|+++|+|+.+++.|++++...+..+++ .+..+|
T Consensus 44 ~~l~~~~~~~---~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v-------~~~~~d 113 (233)
T 2gpy_A 44 ESLLHLLKMA---APARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRI-------ELLFGD 113 (233)
T ss_dssp HHHHHHHHHH---CCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTE-------EEECSC
T ss_pred HHHHHHHhcc---CCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcE-------EEEECC
Confidence 3344444433 4779999999999999999987 689999999999999999999887764433 889999
Q ss_pred cccC------CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEEC
Q 020710 213 LESL------DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFA 257 (322)
Q Consensus 213 ~~~~------~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~ 257 (322)
+.+. +++||+|++....+ + ...+++.+.+++++||++.+.
T Consensus 114 ~~~~~~~~~~~~~fD~I~~~~~~~---~--~~~~l~~~~~~L~pgG~lv~~ 159 (233)
T 2gpy_A 114 ALQLGEKLELYPLFDVLFIDAAKG---Q--YRRFFDMYSPMVRPGGLILSD 159 (233)
T ss_dssp GGGSHHHHTTSCCEEEEEEEGGGS---C--HHHHHHHHGGGEEEEEEEEEE
T ss_pred HHHHHHhcccCCCccEEEECCCHH---H--HHHHHHHHHHHcCCCeEEEEE
Confidence 8763 47899999876542 2 568999999988888877664
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.37 E-value=3.9e-12 Score=115.69 Aligned_cols=164 Identities=15% Similarity=0.139 Sum_probs=84.1
Q ss_pred HHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc-C--CEEEEEeCCHHHHHHHHHHhHHhh----hccCCCCCCCCC
Q 020710 134 VENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ-G--AIVSASDISAAMVAEARKKAEEEL----LADNGGEAPVMP 206 (322)
Q Consensus 134 ~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~-~--~~v~gvD~s~~~l~~a~~~~~~~~----~~~~~~~~~~~~ 206 (322)
...+++.+.. .++.+|||+|||+|.++..+++. | .+|+++|+++.+++.|++++...+ +.. +.-...++
T Consensus 94 ~~~~l~~l~~---~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~-~~~~~~~v 169 (336)
T 2b25_A 94 INMILSMMDI---NPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSH-VEEWPDNV 169 (336)
T ss_dssp HHHHHHHHTC---CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTC-SSCCCCCE
T ss_pred HHHHHHhcCC---CCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhccccccc-ccccCCce
Confidence 3455555543 46889999999999999999987 4 789999999999999999987643 000 00000124
Q ss_pred ceEEcccccC-----CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEE-CCCh-hhHHHHHHhhcc---CCC-
Q 020710 207 KFEVKDLESL-----DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSF-APKT-FYYDLLKRVGEL---FPG- 275 (322)
Q Consensus 207 ~~~~~d~~~~-----~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~-~~~~-~~~~~~~~~~~~---~~~- 275 (322)
++..+|+.+. +++||+|++. ++.+. .+++++.+++++|+.+.+ .+.. ........+.+. +..
T Consensus 170 ~~~~~d~~~~~~~~~~~~fD~V~~~-----~~~~~--~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~~~~~~~~ 242 (336)
T 2b25_A 170 DFIHKDISGATEDIKSLTFDAVALD-----MLNPH--VTLPVFYPHLKHGGVCAVYVVNITQVIELLDGIRTCELALSCE 242 (336)
T ss_dssp EEEESCTTCCC-------EEEEEEC-----SSSTT--TTHHHHGGGEEEEEEEEEEESSHHHHHHHHHHHHHHTCCEEEE
T ss_pred EEEECChHHcccccCCCCeeEEEEC-----CCCHH--HHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhcCCCcccc
Confidence 8999998764 4689999974 34433 578888888777665543 3322 222333322211 000
Q ss_pred --CCCcccccc-----CCHHHHHHHHHHCCCEEEEEeeee
Q 020710 276 --PSKATRAYL-----HAEADVERALQKVGWKIRKRGLIT 308 (322)
Q Consensus 276 --~~~~~~~~~-----~~~~~~~~~l~~aGf~vv~~~~~~ 308 (322)
.......|. ....++.+.|+++||++++.....
T Consensus 243 ~~~~~~~~~w~~~~~~~~~g~y~~~l~~aGF~~v~~~~~~ 282 (336)
T 2b25_A 243 KISEVIVRDWLVCLAKQKNGILAQKVESKINTDVQLDSQE 282 (336)
T ss_dssp EEECCCCCCEEECC--------------------------
T ss_pred eEEEecccceEEEeecccccchhhhhcccccccccccccc
Confidence 000001110 012378899999999998865554
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=99.37 E-value=1.5e-12 Score=107.13 Aligned_cols=115 Identities=13% Similarity=0.107 Sum_probs=87.1
Q ss_pred CCCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC------CCC
Q 020710 146 SLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL------DGK 219 (322)
Q Consensus 146 ~~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~------~~~ 219 (322)
..++.+|||||||. | ++|+|+.|++.|+++.... ++|.++|+.++ +++
T Consensus 10 ~~~g~~vL~~~~g~-------------v-~vD~s~~ml~~a~~~~~~~------------~~~~~~d~~~~~~~~~~~~~ 63 (176)
T 2ld4_A 10 ISAGQFVAVVWDKS-------------S-PVEALKGLVDKLQALTGNE------------GRVSVENIKQLLQSAHKESS 63 (176)
T ss_dssp CCTTSEEEEEECTT-------------S-CHHHHHHHHHHHHHHTTTT------------SEEEEEEGGGGGGGCCCSSC
T ss_pred CCCCCEEEEecCCc-------------e-eeeCCHHHHHHHHHhcccC------------cEEEEechhcCccccCCCCC
Confidence 45789999999996 2 3999999999999886431 28899998654 568
Q ss_pred ccEEEEccccccc-CcchHHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCCCCCccccccCCHHHHHHHHHHCC
Q 020710 220 YDTVVCLDVLIHY-PQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQKVG 298 (322)
Q Consensus 220 fD~V~~~~~l~~~-~~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG 298 (322)
||+|+|..++||+ ++. ..+++++++++++||.+.+..... .. .....+.++.+++.++|+++|
T Consensus 64 fD~V~~~~~l~~~~~~~--~~~l~~~~r~LkpgG~l~~~~~~~---------~~-----~~~~~~~~~~~~~~~~l~~aG 127 (176)
T 2ld4_A 64 FDIILSGLVPGSTTLHS--AEILAEIARILRPGGCLFLKEPVE---------TA-----VDNNSKVKTASKLCSALTLSG 127 (176)
T ss_dssp EEEEEECCSTTCCCCCC--HHHHHHHHHHEEEEEEEEEEEEEE---------SS-----SCSSSSSCCHHHHHHHHHHTT
T ss_pred EeEEEECChhhhcccCH--HHHHHHHHHHCCCCEEEEEEcccc---------cc-----cccccccCCHHHHHHHHHHCC
Confidence 9999999999999 774 599999999998888776632110 00 011233457899999999999
Q ss_pred CEEEE
Q 020710 299 WKIRK 303 (322)
Q Consensus 299 f~vv~ 303 (322)
| +..
T Consensus 128 f-i~~ 131 (176)
T 2ld4_A 128 L-VEV 131 (176)
T ss_dssp C-EEE
T ss_pred C-cEe
Confidence 9 553
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=2.3e-12 Score=112.17 Aligned_cols=98 Identities=13% Similarity=0.094 Sum_probs=80.3
Q ss_pred CCCeEEEECCCcccchHHHHhc---CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQ---GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
++.+|||||||+|..+..+++. +.+|+++|+|+.+++.|++++...+...++ +++++|+.+.
T Consensus 79 ~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i-------~~~~gda~~~l~~l~~~~ 151 (247)
T 1sui_A 79 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKI-------DFREGPALPVLDEMIKDE 151 (247)
T ss_dssp TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGE-------EEEESCHHHHHHHHHHSG
T ss_pred CcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCe-------EEEECCHHHHHHHHHhcc
Confidence 4679999999999999999986 689999999999999999999887765444 8999997543
Q ss_pred --CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEEC
Q 020710 217 --DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFA 257 (322)
Q Consensus 217 --~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~ 257 (322)
+++||+|++... ......+++.+.+++++||++.+.
T Consensus 152 ~~~~~fD~V~~d~~-----~~~~~~~l~~~~~~LkpGG~lv~d 189 (247)
T 1sui_A 152 KNHGSYDFIFVDAD-----KDNYLNYHKRLIDLVKVGGVIGYD 189 (247)
T ss_dssp GGTTCBSEEEECSC-----STTHHHHHHHHHHHBCTTCCEEEE
T ss_pred CCCCCEEEEEEcCc-----hHHHHHHHHHHHHhCCCCeEEEEe
Confidence 478999998643 223568899999988877777654
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.36 E-value=2.8e-12 Score=109.87 Aligned_cols=145 Identities=15% Similarity=0.041 Sum_probs=95.3
Q ss_pred HHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc-C--CEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEE
Q 020710 134 VENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ-G--AIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEV 210 (322)
Q Consensus 134 ~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~-~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~ 210 (322)
...++..+......++.+|||+|||+|.++..+++. + .+|+|+|+|+.|++.+++++... . ++.+++
T Consensus 59 ~~~i~~~l~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~---~-------~v~~~~ 128 (227)
T 1g8a_A 59 GAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER---R-------NIVPIL 128 (227)
T ss_dssp HHHHHTTCCCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC---T-------TEEEEE
T ss_pred HHHHHhhHHhcCCCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc---C-------CCEEEE
Confidence 344433344333346789999999999999999977 3 68999999999999998877543 1 138899
Q ss_pred cccccC------CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCCCCCcccccc
Q 020710 211 KDLESL------DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYL 284 (322)
Q Consensus 211 ~d~~~~------~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (322)
+|+.+. +++||+|++... .++ ....+++++.+++++||.+.+.-... .... ....+ .
T Consensus 129 ~d~~~~~~~~~~~~~~D~v~~~~~---~~~-~~~~~l~~~~~~LkpgG~l~~~~~~~----------~~~~-~~~~~--~ 191 (227)
T 1g8a_A 129 GDATKPEEYRALVPKVDVIFEDVA---QPT-QAKILIDNAEVYLKRGGYGMIAVKSR----------SIDV-TKEPE--Q 191 (227)
T ss_dssp CCTTCGGGGTTTCCCEEEEEECCC---STT-HHHHHHHHHHHHEEEEEEEEEEEEGG----------GTCT-TSCHH--H
T ss_pred ccCCCcchhhcccCCceEEEECCC---CHh-HHHHHHHHHHHhcCCCCEEEEEEecC----------CCCC-CCChh--h
Confidence 998762 468999997544 122 23355999999887777655431100 0000 00111 1
Q ss_pred CCHHHHHHHHHHCCCEEEEEeee
Q 020710 285 HAEADVERALQKVGWKIRKRGLI 307 (322)
Q Consensus 285 ~~~~~~~~~l~~aGf~vv~~~~~ 307 (322)
...+++.++ .++ |++++....
T Consensus 192 ~~~~~l~~l-~~~-f~~~~~~~~ 212 (227)
T 1g8a_A 192 VFREVEREL-SEY-FEVIERLNL 212 (227)
T ss_dssp HHHHHHHHH-HTT-SEEEEEEEC
T ss_pred hhHHHHHHH-Hhh-ceeeeEecc
Confidence 235678777 777 999876543
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=3e-12 Score=110.49 Aligned_cols=106 Identities=16% Similarity=0.144 Sum_probs=81.0
Q ss_pred hhHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcC-CEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceE
Q 020710 131 SKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQG-AIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFE 209 (322)
Q Consensus 131 ~~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~ 209 (322)
......+++.+.. .++.+|||||||+|.++..+++.+ .+|+++|+|+.+++.+++++...+..+ +.+.
T Consensus 77 ~~~~~~~~~~l~~---~~~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~--------v~~~ 145 (235)
T 1jg1_A 77 PHMVAIMLEIANL---KPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKN--------VHVI 145 (235)
T ss_dssp HHHHHHHHHHHTC---CTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCS--------EEEE
T ss_pred HHHHHHHHHhcCC---CCCCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCC--------cEEE
Confidence 3455666666643 367899999999999999999885 899999999999999999988766533 3888
Q ss_pred EcccccC---CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEE
Q 020710 210 VKDLESL---DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILS 255 (322)
Q Consensus 210 ~~d~~~~---~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~ 255 (322)
.+|+... .++||+|++..+++++++ .+.+.+++||.+.
T Consensus 146 ~~d~~~~~~~~~~fD~Ii~~~~~~~~~~--------~~~~~L~pgG~lv 186 (235)
T 1jg1_A 146 LGDGSKGFPPKAPYDVIIVTAGAPKIPE--------PLIEQLKIGGKLI 186 (235)
T ss_dssp ESCGGGCCGGGCCEEEEEECSBBSSCCH--------HHHHTEEEEEEEE
T ss_pred ECCcccCCCCCCCccEEEECCcHHHHHH--------HHHHhcCCCcEEE
Confidence 9997332 345999999999988874 3455555555443
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.34 E-value=2e-12 Score=118.63 Aligned_cols=100 Identities=24% Similarity=0.219 Sum_probs=80.5
Q ss_pred CCCeEEEECCCcccchHHHHhcCC-EEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--CCCccEEE
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQGA-IVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL--DGKYDTVV 224 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~fD~V~ 224 (322)
++++|||||||+|.++..+++.|+ +|+|||.|+ |++.|++....+++.+++ +++.+|++++ +++||+|+
T Consensus 83 ~~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~-~~~~a~~~~~~n~~~~~i-------~~i~~~~~~~~lpe~~Dviv 154 (376)
T 4hc4_A 83 RGKTVLDVGAGTGILSIFCAQAGARRVYAVEASA-IWQQAREVVRFNGLEDRV-------HVLPGPVETVELPEQVDAIV 154 (376)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-THHHHHHHHHHTTCTTTE-------EEEESCTTTCCCSSCEEEEE
T ss_pred CCCEEEEeCCCccHHHHHHHHhCCCEEEEEeChH-HHHHHHHHHHHcCCCceE-------EEEeeeeeeecCCccccEEE
Confidence 578999999999999999999986 699999996 899999999988887765 9999999876 78999999
Q ss_pred EcccccccCcc-hHHHHHHHHHhccCCeEEEE
Q 020710 225 CLDVLIHYPQS-KADGMIAHLASLAEKRLILS 255 (322)
Q Consensus 225 ~~~~l~~~~~~-~~~~~l~~l~~~~~~~~il~ 255 (322)
+-..-..+..+ .+..++....++++++|++.
T Consensus 155 sE~~~~~l~~e~~l~~~l~a~~r~Lkp~G~~i 186 (376)
T 4hc4_A 155 SEWMGYGLLHESMLSSVLHARTKWLKEGGLLL 186 (376)
T ss_dssp CCCCBTTBTTTCSHHHHHHHHHHHEEEEEEEE
T ss_pred eecccccccccchhhhHHHHHHhhCCCCceEC
Confidence 84433333322 36778888778887777664
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=99.34 E-value=5.9e-12 Score=117.47 Aligned_cols=114 Identities=15% Similarity=0.138 Sum_probs=83.1
Q ss_pred hHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc-CC-EEEEEeCCHHHHHHH-------HHHhHHhhhccCCCCC
Q 020710 132 KTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ-GA-IVSASDISAAMVAEA-------RKKAEEELLADNGGEA 202 (322)
Q Consensus 132 ~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~-~~-~v~gvD~s~~~l~~a-------~~~~~~~~~~~~~~~~ 202 (322)
..+..+++.+.. .++.+|||||||+|.++..+++. ++ +|+|||+|+.+++.| ++++...++.
T Consensus 229 ~~v~~ml~~l~l---~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~------ 299 (433)
T 1u2z_A 229 NFLSDVYQQCQL---KKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMR------ 299 (433)
T ss_dssp HHHHHHHHHTTC---CTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBC------
T ss_pred HHHHHHHHhcCC---CCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCC------
Confidence 344555555543 46889999999999999999986 54 799999999999998 7777766532
Q ss_pred CCCCceEEcccc-c------CCCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEEC
Q 020710 203 PVMPKFEVKDLE-S------LDGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFA 257 (322)
Q Consensus 203 ~~~~~~~~~d~~-~------~~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~ 257 (322)
..+++++++|.. . ..++||+|+++.++ +.++ ....++++.+.+++||.+.+.
T Consensus 300 ~~nV~~i~gD~~~~~~~~~~~~~~FDvIvvn~~l-~~~d--~~~~L~el~r~LKpGG~lVi~ 358 (433)
T 1u2z_A 300 LNNVEFSLKKSFVDNNRVAELIPQCDVILVNNFL-FDED--LNKKVEKILQTAKVGCKIISL 358 (433)
T ss_dssp CCCEEEEESSCSTTCHHHHHHGGGCSEEEECCTT-CCHH--HHHHHHHHHTTCCTTCEEEES
T ss_pred CCceEEEEcCccccccccccccCCCCEEEEeCcc-cccc--HHHHHHHHHHhCCCCeEEEEe
Confidence 012378877543 2 14789999998776 3333 668889999988777766554
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.34 E-value=3.9e-12 Score=109.92 Aligned_cols=108 Identities=15% Similarity=0.177 Sum_probs=75.8
Q ss_pred CCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEccccc-C-----CCC
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLES-L-----DGK 219 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~-----~~~ 219 (322)
++.+|||||||+|.++..+++. +..|+|||+|+.|++.|++++........ ....++.++++|+.+ + +++
T Consensus 46 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~--~~~~nv~~~~~d~~~~l~~~~~~~~ 123 (235)
T 3ckk_A 46 AQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPA--GGFQNIACLRSNAMKHLPNFFYKGQ 123 (235)
T ss_dssp CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTT--CCCTTEEEEECCTTTCHHHHCCTTC
T ss_pred CCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHh--cCCCeEEEEECcHHHhhhhhCCCcC
Confidence 4678999999999999999987 57899999999999999988754211000 011235899999876 2 689
Q ss_pred ccEEEEcccccccCcch------HHHHHHHHHhccCCeEEEEEC
Q 020710 220 YDTVVCLDVLIHYPQSK------ADGMIAHLASLAEKRLILSFA 257 (322)
Q Consensus 220 fD~V~~~~~l~~~~~~~------~~~~l~~l~~~~~~~~il~~~ 257 (322)
||.|++...-.+..... ...+++++.+++++||.+.+.
T Consensus 124 ~D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~ 167 (235)
T 3ckk_A 124 LTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTI 167 (235)
T ss_dssp EEEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEE
T ss_pred eeEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEE
Confidence 99998754322211100 137999999988877766553
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=99.33 E-value=7.2e-12 Score=108.32 Aligned_cols=99 Identities=14% Similarity=0.058 Sum_probs=81.5
Q ss_pred CCCeEEEECCCcccchHHHHhc---CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQ---GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
++.+|||||||+|..+..+++. +.+|+++|+|+.+++.|++++...+..+++ +++++|+.+.
T Consensus 70 ~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i-------~~~~gda~~~l~~l~~~~ 142 (237)
T 3c3y_A 70 NAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKI-------NFIESDAMLALDNLLQGQ 142 (237)
T ss_dssp TCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGE-------EEEESCHHHHHHHHHHST
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcE-------EEEEcCHHHHHHHHHhcc
Confidence 4679999999999999999986 679999999999999999999887776544 8999997542
Q ss_pred --CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEECC
Q 020710 217 --DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAP 258 (322)
Q Consensus 217 --~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~ 258 (322)
+++||+|++... ......+++.+.+++++||++.+..
T Consensus 143 ~~~~~fD~I~~d~~-----~~~~~~~l~~~~~~L~pGG~lv~d~ 181 (237)
T 3c3y_A 143 ESEGSYDFGFVDAD-----KPNYIKYHERLMKLVKVGGIVAYDN 181 (237)
T ss_dssp TCTTCEEEEEECSC-----GGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred CCCCCcCEEEECCc-----hHHHHHHHHHHHHhcCCCeEEEEec
Confidence 478999997532 2336688999999888888877643
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=2.1e-11 Score=114.68 Aligned_cols=113 Identities=27% Similarity=0.365 Sum_probs=82.1
Q ss_pred hHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEc
Q 020710 132 KTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVK 211 (322)
Q Consensus 132 ~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (322)
.+++.+++++.. .++.+|||+|||+|.++..+++.+.+|+|+|+|+.|++.|++++...+..+ +.|+++
T Consensus 273 ~l~~~~~~~l~~---~~~~~VLDlgcG~G~~~~~la~~~~~V~gvD~s~~al~~A~~n~~~~~~~~--------v~f~~~ 341 (433)
T 1uwv_A 273 KMVARALEWLDV---QPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQN--------VTFYHE 341 (433)
T ss_dssp HHHHHHHHHHTC---CTTCEEEEESCTTTTTHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCS--------EEEEEC
T ss_pred HHHHHHHHhhcC---CCCCEEEECCCCCCHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCCCc--------eEEEEC
Confidence 445556666543 356799999999999999999998899999999999999999998776542 389999
Q ss_pred ccccC-------CCCccEEEEcccccccCcchHHHHHHHHHhccCCeE-EEEECCCh
Q 020710 212 DLESL-------DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRL-ILSFAPKT 260 (322)
Q Consensus 212 d~~~~-------~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~-il~~~~~~ 260 (322)
|+.+. +++||+|++. .|......+++.+.++.++++ ++++.+.+
T Consensus 342 d~~~~l~~~~~~~~~fD~Vv~d-----PPr~g~~~~~~~l~~~~p~~ivyvsc~p~t 393 (433)
T 1uwv_A 342 NLEEDVTKQPWAKNGFDKVLLD-----PARAGAAGVMQQIIKLEPIRIVYVSCNPAT 393 (433)
T ss_dssp CTTSCCSSSGGGTTCCSEEEEC-----CCTTCCHHHHHHHHHHCCSEEEEEESCHHH
T ss_pred CHHHHhhhhhhhcCCCCEEEEC-----CCCccHHHHHHHHHhcCCCeEEEEECChHH
Confidence 98762 3689999974 333223466777766444333 23454443
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.33 E-value=5.9e-12 Score=113.55 Aligned_cols=130 Identities=14% Similarity=0.124 Sum_probs=93.2
Q ss_pred CCCCeEEEECCCcccchHHHHhc---CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC---CCCc
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQ---GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL---DGKY 220 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~f 220 (322)
.++.+|||+|||+|..+..+++. +.+|+++|+|+.+++.+++++...+..+ +.++++|+.++ +++|
T Consensus 117 ~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~--------v~~~~~D~~~~~~~~~~f 188 (315)
T 1ixk_A 117 KPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLN--------VILFHSSSLHIGELNVEF 188 (315)
T ss_dssp CTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCS--------EEEESSCGGGGGGGCCCE
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCe--------EEEEECChhhcccccccC
Confidence 46789999999999999999976 3689999999999999999998876543 38889998765 5789
Q ss_pred cEEEEc------ccccccCcch--------------HHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCCCCCcc
Q 020710 221 DTVVCL------DVLIHYPQSK--------------ADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKAT 280 (322)
Q Consensus 221 D~V~~~------~~l~~~~~~~--------------~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (322)
|+|++. .++++.|+.. ...+++++.+++++||.+.+...++..
T Consensus 189 D~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~~~----------------- 251 (315)
T 1ixk_A 189 DKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEP----------------- 251 (315)
T ss_dssp EEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCG-----------------
T ss_pred CEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCCCh-----------------
Confidence 999983 2344333210 147888898888877776653332210
Q ss_pred ccccCCHHHHHHHHHHCCCEEEEE
Q 020710 281 RAYLHAEADVERALQKVGWKIRKR 304 (322)
Q Consensus 281 ~~~~~~~~~~~~~l~~aGf~vv~~ 304 (322)
..+.+.++..+++.||+++..
T Consensus 252 ---~Ene~~v~~~l~~~~~~~~~~ 272 (315)
T 1ixk_A 252 ---EENEFVIQWALDNFDVELLPL 272 (315)
T ss_dssp ---GGTHHHHHHHHHHSSEEEECC
T ss_pred ---HHhHHHHHHHHhcCCCEEecC
Confidence 013456677778888877654
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.33 E-value=3.7e-12 Score=110.16 Aligned_cols=98 Identities=14% Similarity=0.039 Sum_probs=80.1
Q ss_pred CCCeEEEECCCcccchHHHHhc---CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQ---GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
++.+|||||||+|..+..+++. +.+|+++|+++.+++.+++++...+..+++ .+.++|+.+.
T Consensus 60 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v-------~~~~~d~~~~~~~~~~~~ 132 (239)
T 2hnk_A 60 GAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKI-------FLKLGSALETLQVLIDSK 132 (239)
T ss_dssp TCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGE-------EEEESCHHHHHHHHHHCS
T ss_pred CcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCE-------EEEECCHHHHHHHHHhhc
Confidence 4789999999999999999987 579999999999999999999887765544 8899987542
Q ss_pred -----------C-CCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEEC
Q 020710 217 -----------D-GKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFA 257 (322)
Q Consensus 217 -----------~-~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~ 257 (322)
+ ++||+|++..... ....+++.+.+++++||++.+.
T Consensus 133 ~~~~~~~~f~~~~~~fD~I~~~~~~~-----~~~~~l~~~~~~L~pgG~lv~~ 180 (239)
T 2hnk_A 133 SAPSWASDFAFGPSSIDLFFLDADKE-----NYPNYYPLILKLLKPGGLLIAD 180 (239)
T ss_dssp SCCGGGTTTCCSTTCEEEEEECSCGG-----GHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccccccccccCCCCCcCEEEEeCCHH-----HHHHHHHHHHHHcCCCeEEEEE
Confidence 1 7899999875432 2558889999988888877664
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.33 E-value=9.9e-13 Score=114.15 Aligned_cols=98 Identities=13% Similarity=0.101 Sum_probs=81.3
Q ss_pred CCCeEEEECCCcccchHHHHhc---CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQ---GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
++.+|||||||+|..+..+++. +.+|+++|+|+.+++.|++++...+...++ +++++|+.+.
T Consensus 60 ~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i-------~~~~gda~~~l~~~~~~~ 132 (242)
T 3r3h_A 60 RAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKI-------KLRLGPALDTLHSLLNEG 132 (242)
T ss_dssp TCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTE-------EEEESCHHHHHHHHHHHH
T ss_pred CcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcE-------EEEEcCHHHHHHHHhhcc
Confidence 4679999999999999999985 679999999999999999999888776544 8999998653
Q ss_pred -CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEEC
Q 020710 217 -DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFA 257 (322)
Q Consensus 217 -~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~ 257 (322)
+++||+|++... ......+++.+.+++++||++.+.
T Consensus 133 ~~~~fD~V~~d~~-----~~~~~~~l~~~~~~LkpGG~lv~d 169 (242)
T 3r3h_A 133 GEHQFDFIFIDAD-----KTNYLNYYELALKLVTPKGLIAID 169 (242)
T ss_dssp CSSCEEEEEEESC-----GGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCCEeEEEEcCC-----hHHhHHHHHHHHHhcCCCeEEEEE
Confidence 378999998643 233567899999988888887763
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.4e-11 Score=105.50 Aligned_cols=112 Identities=16% Similarity=0.099 Sum_probs=80.5
Q ss_pred HHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcC-------CEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCC
Q 020710 133 TVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQG-------AIVSASDISAAMVAEARKKAEEELLADNGGEAPVM 205 (322)
Q Consensus 133 ~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~-------~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~ 205 (322)
....+++.+... ..++.+|||||||+|.++..+++.. .+|+++|+|+.+++.+++++...+... ....+
T Consensus 66 ~~~~~~~~l~~~-~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~---~~~~~ 141 (227)
T 2pbf_A 66 MHALSLKRLINV-LKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPEL---LKIDN 141 (227)
T ss_dssp HHHHHHHHHTTT-SCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGG---GSSTT
T ss_pred HHHHHHHHHHhh-CCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccc---cccCC
Confidence 445666666421 2467899999999999999999874 399999999999999999988765200 00011
Q ss_pred CceEEcccccC-------CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEE
Q 020710 206 PKFEVKDLESL-------DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSF 256 (322)
Q Consensus 206 ~~~~~~d~~~~-------~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~ 256 (322)
+.+..+|+.+. .++||+|++...++++. +.+.++++++|++.+
T Consensus 142 v~~~~~d~~~~~~~~~~~~~~fD~I~~~~~~~~~~--------~~~~~~LkpgG~lv~ 191 (227)
T 2pbf_A 142 FKIIHKNIYQVNEEEKKELGLFDAIHVGASASELP--------EILVDLLAENGKLII 191 (227)
T ss_dssp EEEEECCGGGCCHHHHHHHCCEEEEEECSBBSSCC--------HHHHHHEEEEEEEEE
T ss_pred EEEEECChHhcccccCccCCCcCEEEECCchHHHH--------HHHHHhcCCCcEEEE
Confidence 38999998653 37899999999988764 344555555554433
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.32 E-value=9.6e-12 Score=109.94 Aligned_cols=105 Identities=22% Similarity=0.260 Sum_probs=80.9
Q ss_pred HHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc---CCEEEEEeCCHHHHHHHHHHhHHh-h-hccCCCCCCCCCceE
Q 020710 135 ENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ---GAIVSASDISAAMVAEARKKAEEE-L-LADNGGEAPVMPKFE 209 (322)
Q Consensus 135 ~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~-~-~~~~~~~~~~~~~~~ 209 (322)
..++..+.. .++.+|||+|||+|.++..+++. +.+|+++|+|+.+++.+++++... + ...+ +.+.
T Consensus 89 ~~i~~~~~~---~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~-------v~~~ 158 (280)
T 1i9g_A 89 AQIVHEGDI---FPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDN-------WRLV 158 (280)
T ss_dssp HHHHHHTTC---CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTT-------EEEE
T ss_pred HHHHHHcCC---CCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCc-------EEEE
Confidence 445555443 46789999999999999999986 679999999999999999998766 3 2222 2888
Q ss_pred EcccccC---CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEE
Q 020710 210 VKDLESL---DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSF 256 (322)
Q Consensus 210 ~~d~~~~---~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~ 256 (322)
.+|+.+. +++||+|++ +++++. .+++++.+++++++.+.+
T Consensus 159 ~~d~~~~~~~~~~~D~v~~-----~~~~~~--~~l~~~~~~L~pgG~l~~ 201 (280)
T 1i9g_A 159 VSDLADSELPDGSVDRAVL-----DMLAPW--EVLDAVSRLLVAGGVLMV 201 (280)
T ss_dssp CSCGGGCCCCTTCEEEEEE-----ESSCGG--GGHHHHHHHEEEEEEEEE
T ss_pred ECchHhcCCCCCceeEEEE-----CCcCHH--HHHHHHHHhCCCCCEEEE
Confidence 9998765 578999997 556644 888999888766665544
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.3e-11 Score=113.19 Aligned_cols=100 Identities=19% Similarity=0.081 Sum_probs=78.1
Q ss_pred CCCCeEEEECCCcccchHHHHhcC---CEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC---CCCc
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQG---AIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL---DGKY 220 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~~---~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~f 220 (322)
.++.+|||+|||+|.++..++..+ .+++|+|+|+.|++.|++++...++. + ++|.++|+.++ .+.|
T Consensus 202 ~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~-~-------i~~~~~D~~~~~~~~~~~ 273 (354)
T 3tma_A 202 RPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLS-W-------IRFLRADARHLPRFFPEV 273 (354)
T ss_dssp CTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCT-T-------CEEEECCGGGGGGTCCCC
T ss_pred CCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCC-c-------eEEEeCChhhCccccCCC
Confidence 467899999999999999999874 78999999999999999999887764 3 39999999876 4679
Q ss_pred cEEEEcccccccCc--ch----HHHHHHHHHhccCCeEEE
Q 020710 221 DTVVCLDVLIHYPQ--SK----ADGMIAHLASLAEKRLIL 254 (322)
Q Consensus 221 D~V~~~~~l~~~~~--~~----~~~~l~~l~~~~~~~~il 254 (322)
|+|+++..+..... .. ...+++.+++++++|+.+
T Consensus 274 D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l 313 (354)
T 3tma_A 274 DRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRV 313 (354)
T ss_dssp SEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEE
T ss_pred CEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEE
Confidence 99999765433211 11 257888888887554433
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=4e-11 Score=105.67 Aligned_cols=128 Identities=18% Similarity=0.169 Sum_probs=94.7
Q ss_pred CCCeEEEECCCcccchHHHHhcC-CEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--CCCccEEE
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQG-AIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL--DGKYDTVV 224 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~fD~V~ 224 (322)
++.+|||+|||+|.++..+++.| ++|+++|+|+.+++.+++++..+++.+++ +++++|+.++ .+.||.|+
T Consensus 125 ~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~~N~~~N~v~~~v-------~~~~~D~~~~~~~~~~D~Vi 197 (278)
T 3k6r_A 125 PDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRM-------SAYNMDNRDFPGENIADRIL 197 (278)
T ss_dssp TTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTE-------EEECSCTTTCCCCSCEEEEE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCCCCcE-------EEEeCcHHHhccccCCCEEE
Confidence 57899999999999999999986 58999999999999999999998887765 8899998876 67899999
Q ss_pred EcccccccCcchHHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCCCCCccccccCCHHHHHHHHHHCCCEEEEE
Q 020710 225 CLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQKVGWKIRKR 304 (322)
Q Consensus 225 ~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~vv~~ 304 (322)
+... +.. ..++....+++++||++.+...... +.. .-...+.++++..+.|+++...
T Consensus 198 ~~~p----~~~--~~~l~~a~~~lk~gG~ih~~~~~~e--------~~~---------~~~~~e~i~~~~~~~g~~v~~~ 254 (278)
T 3k6r_A 198 MGYV----VRT--HEFIPKALSIAKDGAIIHYHNTVPE--------KLM---------PREPFETFKRITKEYGYDVEKL 254 (278)
T ss_dssp ECCC----SSG--GGGHHHHHHHEEEEEEEEEEEEEEG--------GGT---------TTTTHHHHHHHHHHTTCEEEEE
T ss_pred ECCC----CcH--HHHHHHHHHHcCCCCEEEEEeeecc--------ccc---------chhHHHHHHHHHHHcCCcEEEE
Confidence 7532 222 2566666676777777644211000 000 0123567889999999987544
Q ss_pred e
Q 020710 305 G 305 (322)
Q Consensus 305 ~ 305 (322)
.
T Consensus 255 ~ 255 (278)
T 3k6r_A 255 N 255 (278)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.31 E-value=8.7e-12 Score=106.89 Aligned_cols=109 Identities=14% Similarity=0.133 Sum_probs=81.4
Q ss_pred hHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc-C-------CEEEEEeCCHHHHHHHHHHhHHhhh----ccCC
Q 020710 132 KTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ-G-------AIVSASDISAAMVAEARKKAEEELL----ADNG 199 (322)
Q Consensus 132 ~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~-~-------~~v~gvD~s~~~l~~a~~~~~~~~~----~~~~ 199 (322)
.....+++.+... ..++.+|||||||+|.++..+++. + .+|+++|+++.+++.+++++...+. ..+
T Consensus 69 ~~~~~~~~~l~~~-~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~- 146 (227)
T 1r18_A 69 HMHAFALEYLRDH-LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQ- 146 (227)
T ss_dssp HHHHHHHHHTTTT-CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTS-
T ss_pred HHHHHHHHHHHhh-CCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCc-
Confidence 3456667776422 246789999999999999999885 4 4899999999999999999876551 112
Q ss_pred CCCCCCCceEEcccccC---CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEE
Q 020710 200 GEAPVMPKFEVKDLESL---DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSF 256 (322)
Q Consensus 200 ~~~~~~~~~~~~d~~~~---~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~ 256 (322)
+.+..+|+.+. .++||+|++..+++|++ +++.+.+++||.+.+
T Consensus 147 ------v~~~~~d~~~~~~~~~~fD~I~~~~~~~~~~--------~~~~~~LkpgG~lvi 192 (227)
T 1r18_A 147 ------LLIVEGDGRKGYPPNAPYNAIHVGAAAPDTP--------TELINQLASGGRLIV 192 (227)
T ss_dssp ------EEEEESCGGGCCGGGCSEEEEEECSCBSSCC--------HHHHHTEEEEEEEEE
T ss_pred ------eEEEECCcccCCCcCCCccEEEECCchHHHH--------HHHHHHhcCCCEEEE
Confidence 38899998763 37899999999998876 345555555554443
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.30 E-value=2.1e-11 Score=105.64 Aligned_cols=96 Identities=18% Similarity=0.189 Sum_probs=76.2
Q ss_pred CCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC---CCCccEE
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL---DGKYDTV 223 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~fD~V 223 (322)
.++.+|||+|||+|.++..+++.+.+|+++|+|+.+++.++++....+...++ ++..+|+.+. ++.||+|
T Consensus 90 ~~~~~vldiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-------~~~~~d~~~~~~~~~~~D~v 162 (248)
T 2yvl_A 90 NKEKRVLEFGTGSGALLAVLSEVAGEVWTFEAVEEFYKTAQKNLKKFNLGKNV-------KFFNVDFKDAEVPEGIFHAA 162 (248)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHHHHTTCCTTE-------EEECSCTTTSCCCTTCBSEE
T ss_pred CCCCEEEEeCCCccHHHHHHHHhCCEEEEEecCHHHHHHHHHHHHHcCCCCcE-------EEEEcChhhcccCCCcccEE
Confidence 36789999999999999999988889999999999999999998876653322 7888888764 3689999
Q ss_pred EEcccccccCcchHHHHHHHHHhccCCeEEEEE
Q 020710 224 VCLDVLIHYPQSKADGMIAHLASLAEKRLILSF 256 (322)
Q Consensus 224 ~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~ 256 (322)
++ +.+++. .+++++.+++++++.+.+
T Consensus 163 ~~-----~~~~~~--~~l~~~~~~L~~gG~l~~ 188 (248)
T 2yvl_A 163 FV-----DVREPW--HYLEKVHKSLMEGAPVGF 188 (248)
T ss_dssp EE-----CSSCGG--GGHHHHHHHBCTTCEEEE
T ss_pred EE-----CCcCHH--HHHHHHHHHcCCCCEEEE
Confidence 97 455543 778888887665554443
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=1.3e-11 Score=105.63 Aligned_cols=108 Identities=19% Similarity=0.202 Sum_probs=80.8
Q ss_pred HHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc-C--CEEEEEeCCHHHHHHHHHHhHHhhh----ccCCCCCCCC
Q 020710 133 TVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ-G--AIVSASDISAAMVAEARKKAEEELL----ADNGGEAPVM 205 (322)
Q Consensus 133 ~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~-~--~~v~gvD~s~~~l~~a~~~~~~~~~----~~~~~~~~~~ 205 (322)
....+++.+... ..++.+|||||||+|..+..+++. + .+|+++|+|+.+++.+++++...+. ..+
T Consensus 63 ~~~~~l~~l~~~-~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~------- 134 (226)
T 1i1n_A 63 MHAYALELLFDQ-LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGR------- 134 (226)
T ss_dssp HHHHHHHHTTTT-SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSS-------
T ss_pred HHHHHHHHHHhh-CCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCc-------
Confidence 345666666521 246789999999999999999987 4 6899999999999999999876542 112
Q ss_pred CceEEcccccC---CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEE
Q 020710 206 PKFEVKDLESL---DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSF 256 (322)
Q Consensus 206 ~~~~~~d~~~~---~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~ 256 (322)
+.+.++|+... +++||+|++...++++. +.+.+++++||++.+
T Consensus 135 v~~~~~d~~~~~~~~~~fD~i~~~~~~~~~~--------~~~~~~LkpgG~lv~ 180 (226)
T 1i1n_A 135 VQLVVGDGRMGYAEEAPYDAIHVGAAAPVVP--------QALIDQLKPGGRLIL 180 (226)
T ss_dssp EEEEESCGGGCCGGGCCEEEEEECSBBSSCC--------HHHHHTEEEEEEEEE
T ss_pred EEEEECCcccCcccCCCcCEEEECCchHHHH--------HHHHHhcCCCcEEEE
Confidence 38899998654 57899999999887765 345566666665544
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.3e-11 Score=106.34 Aligned_cols=99 Identities=14% Similarity=0.077 Sum_probs=80.7
Q ss_pred CCCeEEEECCCcccchHHHHhc---CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-------C
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQ---GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------D 217 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------~ 217 (322)
++.+|||||||+|..+..+++. +.+|+++|+|+.+++.|++++...+..+++ ++.++|+.+. +
T Consensus 72 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i-------~~~~~d~~~~l~~l~~~~ 144 (232)
T 3cbg_A 72 GAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKI-------SLRLGPALATLEQLTQGK 144 (232)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGE-------EEEESCHHHHHHHHHTSS
T ss_pred CCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcE-------EEEEcCHHHHHHHHHhcC
Confidence 4679999999999999999986 579999999999999999999887765444 8999997542 2
Q ss_pred --CCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEECC
Q 020710 218 --GKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAP 258 (322)
Q Consensus 218 --~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~ 258 (322)
++||+|++... .+....+++.+.+++++|+++.+..
T Consensus 145 ~~~~fD~V~~d~~-----~~~~~~~l~~~~~~LkpgG~lv~~~ 182 (232)
T 3cbg_A 145 PLPEFDLIFIDAD-----KRNYPRYYEIGLNLLRRGGLMVIDN 182 (232)
T ss_dssp SCCCEEEEEECSC-----GGGHHHHHHHHHHTEEEEEEEEEEC
T ss_pred CCCCcCEEEECCC-----HHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 78999997643 2336688999999888888877643
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=8e-12 Score=115.74 Aligned_cols=138 Identities=14% Similarity=0.102 Sum_probs=95.4
Q ss_pred CCCeEEEECCCcccchHHHHhcCC-EEEEEeCCHHHHHHHHHHhHHhhhcc-CCCCCCCCCceEEcccccC-------CC
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQGA-IVSASDISAAMVAEARKKAEEELLAD-NGGEAPVMPKFEVKDLESL-------DG 218 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~-~~~~~~~~~~~~~~d~~~~-------~~ 218 (322)
++.+|||+|||+|.++..+++.|+ +|+++|+|+.|++.|++++...++.. + ++|+++|+.+. ..
T Consensus 212 ~~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~N~~~n~~~~~~-------v~~~~~D~~~~l~~~~~~~~ 284 (385)
T 2b78_A 212 AGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMAN-------HQLVVMDVFDYFKYARRHHL 284 (385)
T ss_dssp BTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTT-------EEEEESCHHHHHHHHHHTTC
T ss_pred CCCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccc-------eEEEECCHHHHHHHHHHhCC
Confidence 478999999999999999999876 89999999999999999998877642 2 38999998663 35
Q ss_pred CccEEEEcccc-----cccCc--chHHHHHHHHHhccCCeEEEEEC--CChhhHHHHHHhhccCCCCCCccccccCCHHH
Q 020710 219 KYDTVVCLDVL-----IHYPQ--SKADGMIAHLASLAEKRLILSFA--PKTFYYDLLKRVGELFPGPSKATRAYLHAEAD 289 (322)
Q Consensus 219 ~fD~V~~~~~l-----~~~~~--~~~~~~l~~l~~~~~~~~il~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (322)
+||+|++.... .+..+ .....+++.+.+++++++++.+. +.....+. -.+.
T Consensus 285 ~fD~Ii~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~~~~~~~--------------------~~~~ 344 (385)
T 2b78_A 285 TYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAANMTVSQ--------------------FKKQ 344 (385)
T ss_dssp CEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHH--------------------HHHH
T ss_pred CccEEEECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcCCHHH--------------------HHHH
Confidence 89999985433 12222 11345677777877777766543 22221110 0245
Q ss_pred HHHHHHHCCCEEEEEeeeeccee
Q 020710 290 VERALQKVGWKIRKRGLITTQFY 312 (322)
Q Consensus 290 ~~~~l~~aGf~vv~~~~~~~~~~ 312 (322)
+.+.+.++|.+++.......++.
T Consensus 345 i~~~~~~~g~~~~~~~~~~~D~p 367 (385)
T 2b78_A 345 IEKGFGKQKHTYLDLQQLPSDFA 367 (385)
T ss_dssp HHHHHTTCCCEEEEEECCCTTSC
T ss_pred HHHHHHHcCCcEEEeCCCCCCCC
Confidence 56677788888666554444433
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.28 E-value=1.1e-11 Score=107.58 Aligned_cols=104 Identities=13% Similarity=0.207 Sum_probs=75.2
Q ss_pred CCCeEEEECCCcccchHHHHhcC--CEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEccccc-C-----CCC
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQG--AIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLES-L-----DGK 219 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~-----~~~ 219 (322)
++.+|||||||+|.++..+++.+ .+|+|||+|+.|++.+++++......+.......++.++++|+.+ + ++.
T Consensus 49 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~~ 128 (246)
T 2vdv_E 49 KKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKGQ 128 (246)
T ss_dssp CCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTTC
T ss_pred CCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhccccc
Confidence 56799999999999999999884 589999999999999999887651110000000124899999876 2 578
Q ss_pred ccEEEEcccccccCcchH-----------HHHHHHHHhccCCeEEEEE
Q 020710 220 YDTVVCLDVLIHYPQSKA-----------DGMIAHLASLAEKRLILSF 256 (322)
Q Consensus 220 fD~V~~~~~l~~~~~~~~-----------~~~l~~l~~~~~~~~il~~ 256 (322)
+|.|++ +++++.. ..+++++.+++++||++.+
T Consensus 129 ~d~v~~-----~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~ 171 (246)
T 2vdv_E 129 LSKMFF-----CFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYT 171 (246)
T ss_dssp EEEEEE-----ESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEE
T ss_pred cCEEEE-----ECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEE
Confidence 999884 4454321 4799999998877776655
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.28 E-value=2.6e-11 Score=112.35 Aligned_cols=99 Identities=16% Similarity=0.095 Sum_probs=77.8
Q ss_pred CCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC----CCCccEE
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL----DGKYDTV 223 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~~fD~V 223 (322)
++.+|||+|||+|.++..+++.|++|+++|+|+.|++.+++++...++.+ .+.++|+.+. .+.||+|
T Consensus 214 ~g~~VLDlg~GtG~~sl~~a~~ga~V~avDis~~al~~a~~n~~~ng~~~---------~~~~~D~~~~l~~~~~~fD~I 284 (393)
T 4dmg_A 214 PGERVLDVYSYVGGFALRAARKGAYALAVDKDLEALGVLDQAALRLGLRV---------DIRHGEALPTLRGLEGPFHHV 284 (393)
T ss_dssp TTCEEEEESCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCCC---------EEEESCHHHHHHTCCCCEEEE
T ss_pred CCCeEEEcccchhHHHHHHHHcCCeEEEEECCHHHHHHHHHHHHHhCCCC---------cEEEccHHHHHHHhcCCCCEE
Confidence 47899999999999999999999899999999999999999998887764 6789998664 4559999
Q ss_pred EEcccccccCc-------chHHHHHHHHHhccCCeEEEE
Q 020710 224 VCLDVLIHYPQ-------SKADGMIAHLASLAEKRLILS 255 (322)
Q Consensus 224 ~~~~~l~~~~~-------~~~~~~l~~l~~~~~~~~il~ 255 (322)
++......-.. .....+++.+.+++++||++.
T Consensus 285 i~dpP~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv 323 (393)
T 4dmg_A 285 LLDPPTLVKRPEELPAMKRHLVDLVREALRLLAEEGFLW 323 (393)
T ss_dssp EECCCCCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEE
T ss_pred EECCCcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEE
Confidence 98643211111 113567777788887777665
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=99.28 E-value=1.4e-11 Score=105.52 Aligned_cols=99 Identities=17% Similarity=0.116 Sum_probs=80.2
Q ss_pred CCCeEEEECCCcccchHHHHhc---CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC------C-
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQ---GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL------D- 217 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~------~- 217 (322)
++.+|||||||+|..+..+++. +.+|+++|+|+.+++.+++++...+...++ +++++|+.+. .
T Consensus 69 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i-------~~~~~d~~~~~~~~~~~~ 141 (229)
T 2avd_A 69 QAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKI-------DLRLKPALETLDELLAAG 141 (229)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTE-------EEEESCHHHHHHHHHHTT
T ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeE-------EEEEcCHHHHHHHHHhcC
Confidence 5789999999999999999986 679999999999999999999887664433 8999997543 1
Q ss_pred --CCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEECC
Q 020710 218 --GKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAP 258 (322)
Q Consensus 218 --~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~ 258 (322)
++||+|++... ......+++.+.+++++|+++.+..
T Consensus 142 ~~~~~D~v~~d~~-----~~~~~~~l~~~~~~L~pgG~lv~~~ 179 (229)
T 2avd_A 142 EAGTFDVAVVDAD-----KENCSAYYERCLQLLRPGGILAVLR 179 (229)
T ss_dssp CTTCEEEEEECSC-----STTHHHHHHHHHHHEEEEEEEEEEC
T ss_pred CCCCccEEEECCC-----HHHHHHHHHHHHHHcCCCeEEEEEC
Confidence 78999998543 2335688999999888888776643
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.26 E-value=1.4e-11 Score=109.58 Aligned_cols=87 Identities=21% Similarity=0.227 Sum_probs=69.0
Q ss_pred HHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcc
Q 020710 133 TVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKD 212 (322)
Q Consensus 133 ~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d 212 (322)
.++.+++.+.. .++.+|||||||+|.++..+++.+.+|+|+|+|+.|++.++++....+...+ ++++++|
T Consensus 16 i~~~i~~~~~~---~~~~~VLDiG~G~G~lt~~L~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~-------v~~~~~D 85 (285)
T 1zq9_A 16 IINSIIDKAAL---RPTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELHKRVQGTPVASK-------LQVLVGD 85 (285)
T ss_dssp HHHHHHHHTCC---CTTCEEEEECCTTSTTHHHHHHHSSEEEEEESCHHHHHHHHHHHTTSTTGGG-------EEEEESC
T ss_pred HHHHHHHhcCC---CCCCEEEEEcCcccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHhcCCCCc-------eEEEEcc
Confidence 34556665543 3678999999999999999999999999999999999999998865443222 2899999
Q ss_pred cccC-CCCccEEEEcccc
Q 020710 213 LESL-DGKYDTVVCLDVL 229 (322)
Q Consensus 213 ~~~~-~~~fD~V~~~~~l 229 (322)
+.+. ...||+|+++..+
T Consensus 86 ~~~~~~~~fD~vv~nlpy 103 (285)
T 1zq9_A 86 VLKTDLPFFDTCVANLPY 103 (285)
T ss_dssp TTTSCCCCCSEEEEECCG
T ss_pred eecccchhhcEEEEecCc
Confidence 9875 3589999996544
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=99.25 E-value=2.2e-10 Score=105.69 Aligned_cols=94 Identities=17% Similarity=0.108 Sum_probs=76.6
Q ss_pred CCCCeEEEECCCcccchHHHHhcC--CEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEccccc-CC----CC
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQG--AIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLES-LD----GK 219 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~----~~ 219 (322)
.++.+|||+| |+|.++..++..+ .+|+++|+|+.|++.|++++...+.. ++ +|+++|+.+ ++ ++
T Consensus 171 ~~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~-~v-------~~~~~D~~~~l~~~~~~~ 241 (373)
T 2qm3_A 171 LENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYE-DI-------EIFTFDLRKPLPDYALHK 241 (373)
T ss_dssp STTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCC-CE-------EEECCCTTSCCCTTTSSC
T ss_pred CCCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CE-------EEEEChhhhhchhhccCC
Confidence 3578999999 9999999998875 58999999999999999999887653 23 899999877 43 58
Q ss_pred ccEEEEcccccccCcchHHHHHHHHHhccCCeE
Q 020710 220 YDTVVCLDVLIHYPQSKADGMIAHLASLAEKRL 252 (322)
Q Consensus 220 fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~ 252 (322)
||+|++...+++. . ...+++++.+++++||
T Consensus 242 fD~Vi~~~p~~~~-~--~~~~l~~~~~~LkpgG 271 (373)
T 2qm3_A 242 FDTFITDPPETLE-A--IRAFVGRGIATLKGPR 271 (373)
T ss_dssp BSEEEECCCSSHH-H--HHHHHHHHHHTBCSTT
T ss_pred ccEEEECCCCchH-H--HHHHHHHHHHHcccCC
Confidence 9999998765433 2 4688999998876544
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=1.9e-11 Score=109.64 Aligned_cols=103 Identities=13% Similarity=0.113 Sum_probs=76.2
Q ss_pred CCCeEEEECCCcccchHHHHhcC--CEEEEEeCCHHHHHHHHHHhHH--hhh-ccCCCCCCCCCceEEcccccC----CC
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQG--AIVSASDISAAMVAEARKKAEE--ELL-ADNGGEAPVMPKFEVKDLESL----DG 218 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~~--~~v~gvD~s~~~l~~a~~~~~~--~~~-~~~~~~~~~~~~~~~~d~~~~----~~ 218 (322)
++.+|||||||+|.++..+++.. .+|++||+|+.+++.|++++.. .+. ..+ ++++.+|+.+. ++
T Consensus 95 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~r-------v~v~~~Da~~~l~~~~~ 167 (304)
T 2o07_A 95 NPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSK-------LTLHVGDGFEFMKQNQD 167 (304)
T ss_dssp SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTT-------EEEEESCHHHHHHTCSS
T ss_pred CCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCc-------EEEEECcHHHHHhhCCC
Confidence 56899999999999999999883 6899999999999999998865 232 222 38999997552 67
Q ss_pred CccEEEEcccccccCcch--HHHHHHHHHhccCCeEEEEEC
Q 020710 219 KYDTVVCLDVLIHYPQSK--ADGMIAHLASLAEKRLILSFA 257 (322)
Q Consensus 219 ~fD~V~~~~~l~~~~~~~--~~~~l~~l~~~~~~~~il~~~ 257 (322)
+||+|++....+..+... ...+++.++++++++|++.+.
T Consensus 168 ~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~ 208 (304)
T 2o07_A 168 AFDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQ 208 (304)
T ss_dssp CEEEEEEECC-----------CHHHHHHHHHEEEEEEEEEE
T ss_pred CceEEEECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEe
Confidence 899999865432222111 247899999988888877653
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=99.25 E-value=3.1e-11 Score=109.46 Aligned_cols=104 Identities=14% Similarity=0.143 Sum_probs=78.8
Q ss_pred CCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHh--hhccCCCCCCCCCceEEcccccC-----CC
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEE--LLADNGGEAPVMPKFEVKDLESL-----DG 218 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~--~~~~~~~~~~~~~~~~~~d~~~~-----~~ 218 (322)
++.+|||||||+|..+..+++. ..+|++||+|+.|++.|++++... +..+ .+++++++|+.+. ++
T Consensus 120 ~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~------~rv~~~~~D~~~~l~~~~~~ 193 (334)
T 1xj5_A 120 NPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYED------PRVNLVIGDGVAFLKNAAEG 193 (334)
T ss_dssp CCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGS------TTEEEEESCHHHHHHTSCTT
T ss_pred CCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCC------CcEEEEECCHHHHHHhccCC
Confidence 5689999999999999999987 468999999999999999988653 3311 1238999997543 47
Q ss_pred CccEEEEcccccccCcch--HHHHHHHHHhccCCeEEEEEC
Q 020710 219 KYDTVVCLDVLIHYPQSK--ADGMIAHLASLAEKRLILSFA 257 (322)
Q Consensus 219 ~fD~V~~~~~l~~~~~~~--~~~~l~~l~~~~~~~~il~~~ 257 (322)
+||+|++.....+.+... ...+++.++++++++|++.+.
T Consensus 194 ~fDlIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~ 234 (334)
T 1xj5_A 194 SYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQ 234 (334)
T ss_dssp CEEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEE
T ss_pred CccEEEECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 899999865421111111 258999999998888877764
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=3.4e-11 Score=106.92 Aligned_cols=104 Identities=12% Similarity=0.096 Sum_probs=79.4
Q ss_pred CCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhh--hccCCCCCCCCCceEEcccccC----CCC
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEEL--LADNGGEAPVMPKFEVKDLESL----DGK 219 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~--~~~~~~~~~~~~~~~~~d~~~~----~~~ 219 (322)
++.+|||||||+|..+..+++. +.+|+++|+++.+++.+++++...+ ..+ .+++++.+|+.+. +++
T Consensus 78 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~------~~v~~~~~D~~~~l~~~~~~ 151 (283)
T 2i7c_A 78 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYED------KRVNVFIEDASKFLENVTNT 151 (283)
T ss_dssp SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGS------TTEEEEESCHHHHHHHCCSC
T ss_pred CCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCC------CcEEEEECChHHHHHhCCCC
Confidence 5689999999999999999987 4689999999999999999876432 111 1238899997653 678
Q ss_pred ccEEEEcccccccCcchH--HHHHHHHHhccCCeEEEEEC
Q 020710 220 YDTVVCLDVLIHYPQSKA--DGMIAHLASLAEKRLILSFA 257 (322)
Q Consensus 220 fD~V~~~~~l~~~~~~~~--~~~l~~l~~~~~~~~il~~~ 257 (322)
||+|++....++.+...+ ..+++.++++++++|++.+.
T Consensus 152 fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~ 191 (283)
T 2i7c_A 152 YDVIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQ 191 (283)
T ss_dssp EEEEEEECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEE
T ss_pred ceEEEEcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEE
Confidence 999999654433333223 58999999988888877654
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.24 E-value=4.1e-11 Score=111.41 Aligned_cols=102 Identities=21% Similarity=0.134 Sum_probs=78.6
Q ss_pred CCCeEEEECCCcccchHHHHhcCC-EEEEEeCCHHHHHHHHHHhHHhhh-ccCCCCCCCCCceEEcccccC-------CC
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQGA-IVSASDISAAMVAEARKKAEEELL-ADNGGEAPVMPKFEVKDLESL-------DG 218 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~-------~~ 218 (322)
++.+|||+|||+|.++..+++.|+ +|+|+|+|+.+++.|++++...++ ..++ +|+++|+.+. .+
T Consensus 220 ~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v-------~~~~~D~~~~~~~~~~~~~ 292 (396)
T 3c0k_A 220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKA-------EFVRDDVFKLLRTYRDRGE 292 (396)
T ss_dssp TTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCGGGE-------EEEESCHHHHHHHHHHTTC
T ss_pred CCCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccce-------EEEECCHHHHHHHHHhcCC
Confidence 578999999999999999999964 899999999999999999988776 4223 8999998764 36
Q ss_pred CccEEEEccccccc-----C--cchHHHHHHHHHhccCCeEEEEE
Q 020710 219 KYDTVVCLDVLIHY-----P--QSKADGMIAHLASLAEKRLILSF 256 (322)
Q Consensus 219 ~fD~V~~~~~l~~~-----~--~~~~~~~l~~l~~~~~~~~il~~ 256 (322)
+||+|++....... . ......++..+.+++++++++.+
T Consensus 293 ~fD~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 337 (396)
T 3c0k_A 293 KFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLT 337 (396)
T ss_dssp CEEEEEECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEE
T ss_pred CCCEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEE
Confidence 89999986422110 0 02356788888887777766544
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=7.5e-11 Score=110.39 Aligned_cols=102 Identities=25% Similarity=0.293 Sum_probs=76.1
Q ss_pred CCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-CCCccEEEEc
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-DGKYDTVVCL 226 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~fD~V~~~ 226 (322)
++.+|||+|||+|.++..+++.+.+|+|+|+|+.|++.|++++...++. + +|+++|+.+. ..+||+|++.
T Consensus 290 ~~~~VLDlgcG~G~~sl~la~~~~~V~gvD~s~~ai~~A~~n~~~ngl~--v-------~~~~~d~~~~~~~~fD~Vv~d 360 (425)
T 2jjq_A 290 EGEKILDMYSGVGTFGIYLAKRGFNVKGFDSNEFAIEMARRNVEINNVD--A-------EFEVASDREVSVKGFDTVIVD 360 (425)
T ss_dssp CSSEEEEETCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCC--E-------EEEECCTTTCCCTTCSEEEEC
T ss_pred CCCEEEEeeccchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCc--E-------EEEECChHHcCccCCCEEEEc
Confidence 5789999999999999999999889999999999999999998876643 2 8999999876 3489999985
Q ss_pred ccccccCcchHHHHHHHHHhccCCeE-EEEECCChhh
Q 020710 227 DVLIHYPQSKADGMIAHLASLAEKRL-ILSFAPKTFY 262 (322)
Q Consensus 227 ~~l~~~~~~~~~~~l~~l~~~~~~~~-il~~~~~~~~ 262 (322)
..-..+. ..+++.+..+.+++. ++++.+.++.
T Consensus 361 PPr~g~~----~~~~~~l~~l~p~givyvsc~p~tla 393 (425)
T 2jjq_A 361 PPRAGLH----PRLVKRLNREKPGVIVYVSCNPETFA 393 (425)
T ss_dssp CCTTCSC----HHHHHHHHHHCCSEEEEEESCHHHHH
T ss_pred CCccchH----HHHHHHHHhcCCCcEEEEECChHHHH
Confidence 4321111 246666665544443 3345554443
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=3.6e-11 Score=108.34 Aligned_cols=103 Identities=15% Similarity=0.122 Sum_probs=79.4
Q ss_pred CCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHh--h-h-ccCCCCCCCCCceEEcccccC----C
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEE--L-L-ADNGGEAPVMPKFEVKDLESL----D 217 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~--~-~-~~~~~~~~~~~~~~~~d~~~~----~ 217 (322)
++.+|||||||+|.++..+++. +.+|++||+|+.+++.|++++... + . ..+ ++++++|+.+. +
T Consensus 77 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~-------v~~~~~D~~~~l~~~~ 149 (314)
T 1uir_A 77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPR-------AVLVIDDARAYLERTE 149 (314)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTT-------EEEEESCHHHHHHHCC
T ss_pred CCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCc-------eEEEEchHHHHHHhcC
Confidence 4689999999999999999987 568999999999999999988652 1 1 122 38999998653 6
Q ss_pred CCccEEEEcccccc---cCcch--HHHHHHHHHhccCCeEEEEEC
Q 020710 218 GKYDTVVCLDVLIH---YPQSK--ADGMIAHLASLAEKRLILSFA 257 (322)
Q Consensus 218 ~~fD~V~~~~~l~~---~~~~~--~~~~l~~l~~~~~~~~il~~~ 257 (322)
++||+|++....++ -+... ...+++.++++++++|++.+.
T Consensus 150 ~~fD~Ii~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~ 194 (314)
T 1uir_A 150 ERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQ 194 (314)
T ss_dssp CCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEE
T ss_pred CCccEEEECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEE
Confidence 88999999766543 12111 258999999988887776653
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.22 E-value=2.5e-11 Score=107.15 Aligned_cols=96 Identities=18% Similarity=0.166 Sum_probs=76.8
Q ss_pred CCCCeEEEECCCcccchHHHHhcC--CEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--CCCccE
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQG--AIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL--DGKYDT 222 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~fD~ 222 (322)
.++.+|||+|||+|.++..+++.+ .+|+|+|+|+.+++.|++++...++.+ +.|+++|+.+. .++||+
T Consensus 118 ~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~--------~~~~~~d~~~~~~~~~~D~ 189 (272)
T 3a27_A 118 NENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNN--------VIPILADNRDVELKDVADR 189 (272)
T ss_dssp CTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSS--------EEEEESCGGGCCCTTCEEE
T ss_pred CCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC--------EEEEECChHHcCccCCceE
Confidence 467899999999999999999883 489999999999999999998876543 37999998776 468999
Q ss_pred EEEcccccccCcchHHHHHHHHHhccCCeEEEEE
Q 020710 223 VVCLDVLIHYPQSKADGMIAHLASLAEKRLILSF 256 (322)
Q Consensus 223 V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~ 256 (322)
|++.... . ...++..+.+.+++++++.+
T Consensus 190 Vi~d~p~----~--~~~~l~~~~~~LkpgG~l~~ 217 (272)
T 3a27_A 190 VIMGYVH----K--THKFLDKTFEFLKDRGVIHY 217 (272)
T ss_dssp EEECCCS----S--GGGGHHHHHHHEEEEEEEEE
T ss_pred EEECCcc----c--HHHHHHHHHHHcCCCCEEEE
Confidence 9987543 2 34677777777666665544
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=1.9e-11 Score=105.64 Aligned_cols=103 Identities=12% Similarity=0.028 Sum_probs=76.2
Q ss_pred HHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc------CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCce
Q 020710 135 ENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ------GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKF 208 (322)
Q Consensus 135 ~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~------~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~ 208 (322)
..+...+... ++.+|||||||+|..+..+++. +.+|+|||+|+.|++.|+. ...+ +++
T Consensus 71 ~~l~~~l~~~---~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~------~~~~-------v~~ 134 (236)
T 2bm8_A 71 AVYHDMLWEL---RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS------DMEN-------ITL 134 (236)
T ss_dssp HHHHHHHHHH---CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG------GCTT-------EEE
T ss_pred HHHHHHHHhc---CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhc------cCCc-------eEE
Confidence 3344444443 4679999999999999999886 6899999999999988861 1122 389
Q ss_pred EEcccccC------C-CCccEEEEcccccccCcchHHHHHHHHHh-ccCCeEEEEECC
Q 020710 209 EVKDLESL------D-GKYDTVVCLDVLIHYPQSKADGMIAHLAS-LAEKRLILSFAP 258 (322)
Q Consensus 209 ~~~d~~~~------~-~~fD~V~~~~~l~~~~~~~~~~~l~~l~~-~~~~~~il~~~~ 258 (322)
+++|+.+. + .+||+|++... |. + ...+++++.+ ++++||++.+..
T Consensus 135 ~~gD~~~~~~l~~~~~~~fD~I~~d~~--~~-~--~~~~l~~~~r~~LkpGG~lv~~d 187 (236)
T 2bm8_A 135 HQGDCSDLTTFEHLREMAHPLIFIDNA--HA-N--TFNIMKWAVDHLLEEGDYFIIED 187 (236)
T ss_dssp EECCSSCSGGGGGGSSSCSSEEEEESS--CS-S--HHHHHHHHHHHTCCTTCEEEECS
T ss_pred EECcchhHHHHHhhccCCCCEEEECCc--hH-h--HHHHHHHHHHhhCCCCCEEEEEe
Confidence 99998762 3 37999998665 32 3 5689999986 887777776643
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=3.1e-11 Score=109.03 Aligned_cols=104 Identities=12% Similarity=0.088 Sum_probs=78.1
Q ss_pred CCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHH--hhhccCCCCCCCCCceEEcccccC----CCC
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEE--ELLADNGGEAPVMPKFEVKDLESL----DGK 219 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~--~~~~~~~~~~~~~~~~~~~d~~~~----~~~ 219 (322)
++.+|||||||+|..+..+++. +.+|+++|+|+.+++.|++++.. .+... .+++++++|+.+. +++
T Consensus 116 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~------~~v~~~~~D~~~~l~~~~~~ 189 (321)
T 2pt6_A 116 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYED------KRVNVFIEDASKFLENVTNT 189 (321)
T ss_dssp SCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGS------TTEEEEESCHHHHHHHCCSC
T ss_pred CCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCC------CcEEEEEccHHHHHhhcCCC
Confidence 4689999999999999999987 57899999999999999998765 22211 1238999997653 678
Q ss_pred ccEEEEcccccccCcchH--HHHHHHHHhccCCeEEEEEC
Q 020710 220 YDTVVCLDVLIHYPQSKA--DGMIAHLASLAEKRLILSFA 257 (322)
Q Consensus 220 fD~V~~~~~l~~~~~~~~--~~~l~~l~~~~~~~~il~~~ 257 (322)
||+|++...-..-+...+ ..+++.+++.++++|++.+.
T Consensus 190 fDvIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~ 229 (321)
T 2pt6_A 190 YDVIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQ 229 (321)
T ss_dssp EEEEEEECCCSSSGGGGGSSHHHHHHHHHHEEEEEEEEEE
T ss_pred ceEEEECCcCCCCcchhhhHHHHHHHHHHhcCCCcEEEEE
Confidence 999998653211111112 58999999988888877663
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.21 E-value=2.5e-11 Score=109.19 Aligned_cols=102 Identities=15% Similarity=0.080 Sum_probs=75.2
Q ss_pred CCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHh--hh-ccCCCCCCCCCceEEcccccC----CC
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEE--LL-ADNGGEAPVMPKFEVKDLESL----DG 218 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~--~~-~~~~~~~~~~~~~~~~d~~~~----~~ 218 (322)
++.+|||||||+|..+..+++. ..+|+++|+|+.+++.|++++... +. ..+ ++++.+|+.+. ++
T Consensus 108 ~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~r-------v~~~~~D~~~~l~~~~~ 180 (314)
T 2b2c_A 108 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPK-------LDLFCGDGFEFLKNHKN 180 (314)
T ss_dssp SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTT-------EEEECSCHHHHHHHCTT
T ss_pred CCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCC-------EEEEEChHHHHHHhcCC
Confidence 4679999999999999999987 468999999999999999988643 22 222 38899997653 67
Q ss_pred CccEEEEcccccccC-cchH--HHHHHHHHhccCCeEEEEEC
Q 020710 219 KYDTVVCLDVLIHYP-QSKA--DGMIAHLASLAEKRLILSFA 257 (322)
Q Consensus 219 ~fD~V~~~~~l~~~~-~~~~--~~~l~~l~~~~~~~~il~~~ 257 (322)
+||+|++... .++. ...+ ..+++.++++++++|++.+.
T Consensus 181 ~fD~Ii~d~~-~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~ 221 (314)
T 2b2c_A 181 EFDVIITDSS-DPVGPAESLFGQSYYELLRDALKEDGILSSQ 221 (314)
T ss_dssp CEEEEEECCC--------------HHHHHHHHEEEEEEEEEE
T ss_pred CceEEEEcCC-CCCCcchhhhHHHHHHHHHhhcCCCeEEEEE
Confidence 8999998654 3332 2222 58899999988888877664
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.21 E-value=1.5e-10 Score=105.64 Aligned_cols=100 Identities=19% Similarity=0.152 Sum_probs=78.7
Q ss_pred CCCeEEEECCCcccchHHHHhcC-------CEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--CC
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQG-------AIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL--DG 218 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~~-------~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~ 218 (322)
++.+|||+|||+|.++..+++.. .+++|+|+++.+++.|+.++...+.. +.+.++|.... .+
T Consensus 130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~~---------~~i~~~D~l~~~~~~ 200 (344)
T 2f8l_A 130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQK---------MTLLHQDGLANLLVD 200 (344)
T ss_dssp SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCC---------CEEEESCTTSCCCCC
T ss_pred CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCCC---------ceEEECCCCCccccC
Confidence 46799999999999999988762 68999999999999999988766653 28999997654 57
Q ss_pred CccEEEEcccccccCcchH----------------HHHHHHHHhccCCeEEEEE
Q 020710 219 KYDTVVCLDVLIHYPQSKA----------------DGMIAHLASLAEKRLILSF 256 (322)
Q Consensus 219 ~fD~V~~~~~l~~~~~~~~----------------~~~l~~l~~~~~~~~il~~ 256 (322)
+||+|+++..+.+++.++. ..+++++.+.++++|.+.+
T Consensus 201 ~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~ 254 (344)
T 2f8l_A 201 PVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFF 254 (344)
T ss_dssp CEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEE
T ss_pred CccEEEECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEE
Confidence 8999999988777654321 2578888887766665443
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=3.6e-11 Score=106.64 Aligned_cols=103 Identities=13% Similarity=0.075 Sum_probs=76.4
Q ss_pred CCCeEEEECCCcccchHHHHhcC-CEEEEEeCCHHHHHHHHHHhHHh--hh-------ccCCCCCCCCCceEEcccccC-
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQG-AIVSASDISAAMVAEARKKAEEE--LL-------ADNGGEAPVMPKFEVKDLESL- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~~-~~v~gvD~s~~~l~~a~~~~~~~--~~-------~~~~~~~~~~~~~~~~d~~~~- 216 (322)
++.+|||||||+|.++..+++.+ .+|++||+|+.+++.|++++ .. +. .+ .+++++.+|+.+.
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~------~~v~~~~~D~~~~l 147 (281)
T 1mjf_A 75 KPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKH------EKAKLTIGDGFEFI 147 (281)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCC------SSEEEEESCHHHHH
T ss_pred CCCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-hhccccccccccCCC------CcEEEEECchHHHh
Confidence 46899999999999999999884 58999999999999999987 33 22 11 2238899997553
Q ss_pred --CCCccEEEEcccccccCcchH--HHHHHHHHhccCCeEEEEEC
Q 020710 217 --DGKYDTVVCLDVLIHYPQSKA--DGMIAHLASLAEKRLILSFA 257 (322)
Q Consensus 217 --~~~fD~V~~~~~l~~~~~~~~--~~~l~~l~~~~~~~~il~~~ 257 (322)
+++||+|++....+.-+...+ ..+++.++++++++|++.+.
T Consensus 148 ~~~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~ 192 (281)
T 1mjf_A 148 KNNRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQ 192 (281)
T ss_dssp HHCCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEE
T ss_pred cccCCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEE
Confidence 678999998655322221222 57899999988887777654
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.20 E-value=2.2e-11 Score=109.03 Aligned_cols=100 Identities=12% Similarity=0.051 Sum_probs=76.1
Q ss_pred CCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-----CCCcc
Q 020710 149 GIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-----DGKYD 221 (322)
Q Consensus 149 ~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-----~~~fD 221 (322)
+.+|||||||+|.++..+++. +.+|++||+++.|++.|++++.... ..+ ++++++|+.+. +++||
T Consensus 90 ~~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~-~~r-------v~v~~~Da~~~l~~~~~~~fD 161 (317)
T 3gjy_A 90 KLRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPR-APR-------VKIRVDDARMVAESFTPASRD 161 (317)
T ss_dssp GCEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCC-TTT-------EEEEESCHHHHHHTCCTTCEE
T ss_pred CCEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccC-CCc-------eEEEECcHHHHHhhccCCCCC
Confidence 349999999999999999983 6799999999999999999875321 112 38999997653 47899
Q ss_pred EEEEcccccccCcchH--HHHHHHHHhccCCeEEEEE
Q 020710 222 TVVCLDVLIHYPQSKA--DGMIAHLASLAEKRLILSF 256 (322)
Q Consensus 222 ~V~~~~~l~~~~~~~~--~~~l~~l~~~~~~~~il~~ 256 (322)
+|++....+......+ .++++.++++++++|++.+
T Consensus 162 vIi~D~~~~~~~~~~L~t~efl~~~~r~LkpgGvlv~ 198 (317)
T 3gjy_A 162 VIIRDVFAGAITPQNFTTVEFFEHCHRGLAPGGLYVA 198 (317)
T ss_dssp EEEECCSTTSCCCGGGSBHHHHHHHHHHEEEEEEEEE
T ss_pred EEEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEE
Confidence 9998654332222222 5899999998887777654
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=5.7e-11 Score=117.85 Aligned_cols=101 Identities=16% Similarity=0.114 Sum_probs=80.3
Q ss_pred CCCeEEEECCCcccchHHHHhcCC-EEEEEeCCHHHHHHHHHHhHHhhhc-cCCCCCCCCCceEEcccccC----CCCcc
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQGA-IVSASDISAAMVAEARKKAEEELLA-DNGGEAPVMPKFEVKDLESL----DGKYD 221 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~-~~~~~~~~~~~~~~~d~~~~----~~~fD 221 (322)
++.+|||+|||+|.++..++..|+ +|++||+|+.+++.+++++..+++. .+ ++|+++|+.+. .++||
T Consensus 539 ~g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~~N~~~ngl~~~~-------v~~i~~D~~~~l~~~~~~fD 611 (703)
T 3v97_A 539 KGKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERNLRLNGLTGRA-------HRLIQADCLAWLREANEQFD 611 (703)
T ss_dssp TTCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSTT-------EEEEESCHHHHHHHCCCCEE
T ss_pred CCCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccc-------eEEEecCHHHHHHhcCCCcc
Confidence 478999999999999999998877 5999999999999999999888765 23 38999998763 67899
Q ss_pred EEEEcccc-----------cccCcchHHHHHHHHHhccCCeEEEEEC
Q 020710 222 TVVCLDVL-----------IHYPQSKADGMIAHLASLAEKRLILSFA 257 (322)
Q Consensus 222 ~V~~~~~l-----------~~~~~~~~~~~l~~l~~~~~~~~il~~~ 257 (322)
+|++.... .+. .....+++.+.+++++||++.+.
T Consensus 612 ~Ii~DPP~f~~~~~~~~~~~~~--~~~~~ll~~a~~~LkpgG~L~~s 656 (703)
T 3v97_A 612 LIFIDPPTFSNSKRMEDAFDVQ--RDHLALMKDLKRLLRAGGTIMFS 656 (703)
T ss_dssp EEEECCCSBC-------CCBHH--HHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEECCccccCCccchhHHHHH--HHHHHHHHHHHHhcCCCcEEEEE
Confidence 99985421 111 12567888888888777766654
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.20 E-value=5.6e-11 Score=106.29 Aligned_cols=97 Identities=21% Similarity=0.199 Sum_probs=69.9
Q ss_pred HHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcc
Q 020710 133 TVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKD 212 (322)
Q Consensus 133 ~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d 212 (322)
..+.+++.+.. .++.+|||||||+|.++..+++.+.+|+|+|+|+.|++.+++++...+.. + ++++++|
T Consensus 30 i~~~i~~~~~~---~~~~~VLDiG~G~G~lt~~La~~~~~v~~vDi~~~~~~~a~~~~~~~~~~-~-------v~~~~~D 98 (299)
T 2h1r_A 30 ILDKIIYAAKI---KSSDIVLEIGCGTGNLTVKLLPLAKKVITIDIDSRMISEVKKRCLYEGYN-N-------LEVYEGD 98 (299)
T ss_dssp HHHHHHHHHCC---CTTCEEEEECCTTSTTHHHHTTTSSEEEEECSCHHHHHHHHHHHHHTTCC-C-------EEC----
T ss_pred HHHHHHHhcCC---CCcCEEEEEcCcCcHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCCC-c-------eEEEECc
Confidence 34566666543 35789999999999999999999999999999999999999988765432 1 3889999
Q ss_pred cccC-CCCccEEEEcccccccCcchHHHHH
Q 020710 213 LESL-DGKYDTVVCLDVLIHYPQSKADGMI 241 (322)
Q Consensus 213 ~~~~-~~~fD~V~~~~~l~~~~~~~~~~~l 241 (322)
+.+. .++||+|+++... ++..+.+..++
T Consensus 99 ~~~~~~~~~D~Vv~n~py-~~~~~~~~~ll 127 (299)
T 2h1r_A 99 AIKTVFPKFDVCTANIPY-KISSPLIFKLI 127 (299)
T ss_dssp CCSSCCCCCSEEEEECCG-GGHHHHHHHHH
T ss_pred hhhCCcccCCEEEEcCCc-ccccHHHHHHH
Confidence 8776 4689999986554 34433333333
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=99.19 E-value=8.4e-11 Score=109.34 Aligned_cols=102 Identities=25% Similarity=0.115 Sum_probs=78.9
Q ss_pred CCCeEEEECCCcccchHHHHhcCC-EEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-------CCC
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQGA-IVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------DGK 219 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------~~~ 219 (322)
++.+|||+|||+|.++..+++.|+ +|+|+|+|+.+++.|++++...++..++ .|+++|+.+. .++
T Consensus 217 ~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v-------~~~~~d~~~~~~~~~~~~~~ 289 (396)
T 2as0_A 217 PGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRM-------KFIVGSAFEEMEKLQKKGEK 289 (396)
T ss_dssp TTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGE-------EEEESCHHHHHHHHHHTTCC
T ss_pred CCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccc-------eEEECCHHHHHHHHHhhCCC
Confidence 578999999999999999999865 8999999999999999999887764323 8999998654 468
Q ss_pred ccEEEEcccccccCc-------chHHHHHHHHHhccCCeEEEEE
Q 020710 220 YDTVVCLDVLIHYPQ-------SKADGMIAHLASLAEKRLILSF 256 (322)
Q Consensus 220 fD~V~~~~~l~~~~~-------~~~~~~l~~l~~~~~~~~il~~ 256 (322)
||+|++......... .....++..+.+++++++++.+
T Consensus 290 fD~Vi~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~ 333 (396)
T 2as0_A 290 FDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVT 333 (396)
T ss_dssp EEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred CCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEE
Confidence 999998543222111 2245778888888877775544
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.19 E-value=4.3e-11 Score=105.79 Aligned_cols=104 Identities=18% Similarity=0.170 Sum_probs=78.7
Q ss_pred CCCeEEEECCCcccchHHHHhc-C-CEEEEEeCCHHHHHHHHHHhHHh--hhccCCCCCCCCCceEEcccccC----CCC
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQ-G-AIVSASDISAAMVAEARKKAEEE--LLADNGGEAPVMPKFEVKDLESL----DGK 219 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~-~-~~v~gvD~s~~~l~~a~~~~~~~--~~~~~~~~~~~~~~~~~~d~~~~----~~~ 219 (322)
++.+|||||||+|.++..+++. + .+|++||+++.+++.|++++... +..+ .+++++.+|+.+. +++
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~------~rv~v~~~D~~~~l~~~~~~ 148 (275)
T 1iy9_A 75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDD------PRVDVQVDDGFMHIAKSENQ 148 (275)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTS------TTEEEEESCSHHHHHTCCSC
T ss_pred CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCC------CceEEEECcHHHHHhhCCCC
Confidence 4689999999999999999988 4 68999999999999999988652 1211 1238999997653 578
Q ss_pred ccEEEEcccccccCcch--HHHHHHHHHhccCCeEEEEEC
Q 020710 220 YDTVVCLDVLIHYPQSK--ADGMIAHLASLAEKRLILSFA 257 (322)
Q Consensus 220 fD~V~~~~~l~~~~~~~--~~~~l~~l~~~~~~~~il~~~ 257 (322)
||+|++.....+.+... ..++++.+++.++++|++.+.
T Consensus 149 fD~Ii~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~ 188 (275)
T 1iy9_A 149 YDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQ 188 (275)
T ss_dssp EEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEE
T ss_pred eeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEE
Confidence 99999965443222211 148999999988888877664
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=6.7e-11 Score=109.44 Aligned_cols=102 Identities=22% Similarity=0.116 Sum_probs=79.1
Q ss_pred CCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-------CCCc
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------DGKY 220 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------~~~f 220 (322)
++.+|||+|||+|.++..+++.+.+|+++|+|+.+++.|++++...+..+ +.|+++|+.+. +++|
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~~~~v~~vD~s~~~~~~a~~n~~~n~~~~--------~~~~~~d~~~~~~~~~~~~~~f 280 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEENARLNGLGN--------VRVLEANAFDLLRRLEKEGERF 280 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHHEEEEEEEESCHHHHHHHHHHHHHTTCTT--------EEEEESCHHHHHHHHHHTTCCE
T ss_pred CCCeEEEeeeccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCC--------ceEEECCHHHHHHHHHhcCCCe
Confidence 46799999999999999999887789999999999999999998877653 38999998764 4689
Q ss_pred cEEEEcccccccCc-------chHHHHHHHHHhccCCeEEEEEC
Q 020710 221 DTVVCLDVLIHYPQ-------SKADGMIAHLASLAEKRLILSFA 257 (322)
Q Consensus 221 D~V~~~~~l~~~~~-------~~~~~~l~~l~~~~~~~~il~~~ 257 (322)
|+|++......... .....+++.+.++++++|++.+.
T Consensus 281 D~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 324 (382)
T 1wxx_A 281 DLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATA 324 (382)
T ss_dssp EEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred eEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 99998543211111 22457888888888777766543
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=99.18 E-value=3.7e-11 Score=105.09 Aligned_cols=78 Identities=22% Similarity=0.135 Sum_probs=65.2
Q ss_pred CCCeEEEECCCcccchHHHHhcCCEEEEEeCCH-------HHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC----
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQGAIVSASDISA-------AMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL---- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~-------~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---- 216 (322)
++.+|||+|||+|.++..+++.+++|+++|+|+ .+++.++++....+..+++ +|+++|+.+.
T Consensus 83 ~~~~VLDlgcG~G~~a~~lA~~g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri-------~~~~~d~~~~l~~~ 155 (258)
T 2r6z_A 83 AHPTVWDATAGLGRDSFVLASLGLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARI-------NLHFGNAAEQMPAL 155 (258)
T ss_dssp GCCCEEETTCTTCHHHHHHHHTTCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTE-------EEEESCHHHHHHHH
T ss_pred CcCeEEEeeCccCHHHHHHHHhCCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCe-------EEEECCHHHHHHhh
Confidence 467999999999999999999999999999999 9999999888777665544 8999998764
Q ss_pred -C--CCccEEEEccccccc
Q 020710 217 -D--GKYDTVVCLDVLIHY 232 (322)
Q Consensus 217 -~--~~fD~V~~~~~l~~~ 232 (322)
+ ++||+|++...+.+.
T Consensus 156 ~~~~~~fD~V~~dP~~~~~ 174 (258)
T 2r6z_A 156 VKTQGKPDIVYLDPMYPER 174 (258)
T ss_dssp HHHHCCCSEEEECCCC---
T ss_pred hccCCCccEEEECCCCCCc
Confidence 2 789999998776553
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=6.7e-11 Score=108.35 Aligned_cols=101 Identities=13% Similarity=0.084 Sum_probs=75.3
Q ss_pred HHHHHHHHhhhcCCCCCCeEEEECCC------cccchHHHHhc---CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCC
Q 020710 133 TVENTMQMLNDEGSLKGIAVCDAGCG------TGSLAIPLAKQ---GAIVSASDISAAMVAEARKKAEEELLADNGGEAP 203 (322)
Q Consensus 133 ~~~~~~~~l~~~~~~~~~~VLDvGcG------~G~~~~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~ 203 (322)
.++++++.+.. ++.+||||||| +|..+..+++. +++|+|+|+|+.|.. . ..
T Consensus 205 ~Ye~lL~~l~~----~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~~--------~--~~------ 264 (419)
T 3sso_A 205 HYDRHFRDYRN----QQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSHV--------D--EL------ 264 (419)
T ss_dssp HHHHHHGGGTT----SCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGGG--------C--BT------
T ss_pred HHHHHHHhhcC----CCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHhh--------c--CC------
Confidence 44555544433 47899999999 77777777764 679999999999831 1 11
Q ss_pred CCCceEEcccccC---------CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEEC
Q 020710 204 VMPKFEVKDLESL---------DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFA 257 (322)
Q Consensus 204 ~~~~~~~~d~~~~---------~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~ 257 (322)
+++|+++|+.++ +++||+|+|.. .|++++ ....|+++++++++||++.+.
T Consensus 265 -rI~fv~GDa~dlpf~~~l~~~d~sFDlVisdg-sH~~~d--~~~aL~el~rvLKPGGvlVi~ 323 (419)
T 3sso_A 265 -RIRTIQGDQNDAEFLDRIARRYGPFDIVIDDG-SHINAH--VRTSFAALFPHVRPGGLYVIE 323 (419)
T ss_dssp -TEEEEECCTTCHHHHHHHHHHHCCEEEEEECS-CCCHHH--HHHHHHHHGGGEEEEEEEEEE
T ss_pred -CcEEEEecccccchhhhhhcccCCccEEEECC-cccchh--HHHHHHHHHHhcCCCeEEEEE
Confidence 238999999874 48999999875 456655 568999999999888877764
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=1.1e-10 Score=106.17 Aligned_cols=95 Identities=19% Similarity=0.173 Sum_probs=75.6
Q ss_pred CCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccCCCCccEEEEcc
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESLDGKYDTVVCLD 227 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~fD~V~~~~ 227 (322)
++.+|||+|||+|.++.. ++.+.+|+++|+|+.+++.+++++...++..++ .|+++|+.+..++||+|++..
T Consensus 195 ~~~~VLDlg~G~G~~~l~-a~~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v-------~~~~~D~~~~~~~fD~Vi~dp 266 (336)
T 2yx1_A 195 LNDVVVDMFAGVGPFSIA-CKNAKKIYAIDINPHAIELLKKNIKLNKLEHKI-------IPILSDVREVDVKGNRVIMNL 266 (336)
T ss_dssp TTCEEEETTCTTSHHHHH-TTTSSEEEEEESCHHHHHHHHHHHHHTTCTTTE-------EEEESCGGGCCCCEEEEEECC
T ss_pred CCCEEEEccCccCHHHHh-ccCCCEEEEEECCHHHHHHHHHHHHHcCCCCcE-------EEEECChHHhcCCCcEEEECC
Confidence 578999999999999999 886678999999999999999999887764333 899999987668899999853
Q ss_pred cccccCcchHHHHHHHHHhccCCeEEEEE
Q 020710 228 VLIHYPQSKADGMIAHLASLAEKRLILSF 256 (322)
Q Consensus 228 ~l~~~~~~~~~~~l~~l~~~~~~~~il~~ 256 (322)
.. ....+++.+.+++++++++.+
T Consensus 267 P~------~~~~~l~~~~~~L~~gG~l~~ 289 (336)
T 2yx1_A 267 PK------FAHKFIDKALDIVEEGGVIHY 289 (336)
T ss_dssp TT------TGGGGHHHHHHHEEEEEEEEE
T ss_pred cH------hHHHHHHHHHHHcCCCCEEEE
Confidence 21 123677777777766665543
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=7.9e-11 Score=105.17 Aligned_cols=104 Identities=12% Similarity=0.075 Sum_probs=75.5
Q ss_pred CCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHH--hhhccCCCCCCCCCceEEcccccC----CCC
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEE--ELLADNGGEAPVMPKFEVKDLESL----DGK 219 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~--~~~~~~~~~~~~~~~~~~~d~~~~----~~~ 219 (322)
++.+|||||||+|..+..+++. ..+|++||+|+.+++.+++++.. .+..+ .+++++++|+.+. +++
T Consensus 90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~------~~v~~~~~D~~~~l~~~~~~ 163 (296)
T 1inl_A 90 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDD------PRAEIVIANGAEYVRKFKNE 163 (296)
T ss_dssp SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGC------TTEEEEESCHHHHGGGCSSC
T ss_pred CCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCC------CceEEEECcHHHHHhhCCCC
Confidence 4689999999999999999988 46899999999999999998865 22211 1238999997542 578
Q ss_pred ccEEEEcccccccCc-c--hHHHHHHHHHhccCCeEEEEEC
Q 020710 220 YDTVVCLDVLIHYPQ-S--KADGMIAHLASLAEKRLILSFA 257 (322)
Q Consensus 220 fD~V~~~~~l~~~~~-~--~~~~~l~~l~~~~~~~~il~~~ 257 (322)
||+|++...-.+... . ....+++.++++++++|++.+.
T Consensus 164 fD~Ii~d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~ 204 (296)
T 1inl_A 164 FDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAE 204 (296)
T ss_dssp EEEEEEEC----------CCSHHHHHHHHHHEEEEEEEEEE
T ss_pred ceEEEEcCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEE
Confidence 999998533210211 0 1258899999988888877664
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=4.9e-11 Score=97.22 Aligned_cols=91 Identities=15% Similarity=0.093 Sum_probs=71.0
Q ss_pred CCCCeEEEECCCcccchHHHHhc---CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-------
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQ---GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL------- 216 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~------- 216 (322)
.++.+|||+|||+|.++..+++. +.+++++|+|+ |++. .+ +.+.++|+.+.
T Consensus 21 ~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~-----------~~-------~~~~~~d~~~~~~~~~~~ 81 (180)
T 1ej0_A 21 KPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI-----------VG-------VDFLQGDFRDELVMKALL 81 (180)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC-----------TT-------EEEEESCTTSHHHHHHHH
T ss_pred CCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc-----------Cc-------EEEEEcccccchhhhhhh
Confidence 46789999999999999999987 47999999999 7543 11 27888888653
Q ss_pred ----CCCccEEEEcccccccCcchH---------HHHHHHHHhccCCeEEEEE
Q 020710 217 ----DGKYDTVVCLDVLIHYPQSKA---------DGMIAHLASLAEKRLILSF 256 (322)
Q Consensus 217 ----~~~fD~V~~~~~l~~~~~~~~---------~~~l~~l~~~~~~~~il~~ 256 (322)
+++||+|++..++++...... ..+++++.++++++|.+.+
T Consensus 82 ~~~~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~ 134 (180)
T 1ej0_A 82 ERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVV 134 (180)
T ss_dssp HHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred ccCCCCceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEE
Confidence 478999999998887765311 4788999998877776554
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=1.4e-10 Score=103.25 Aligned_cols=84 Identities=24% Similarity=0.158 Sum_probs=68.0
Q ss_pred HHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcc
Q 020710 133 TVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKD 212 (322)
Q Consensus 133 ~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d 212 (322)
.++++++.+.. .++.+|||||||+|.++..|++.+.+|++||+++.|++.+++++.... + ++++++|
T Consensus 38 i~~~Iv~~l~~---~~~~~VLEIG~G~G~lT~~La~~~~~V~aVEid~~li~~a~~~~~~~~---~-------v~vi~gD 104 (295)
T 3gru_A 38 FVNKAVESANL---TKDDVVLEIGLGKGILTEELAKNAKKVYVIEIDKSLEPYANKLKELYN---N-------IEIIWGD 104 (295)
T ss_dssp HHHHHHHHTTC---CTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCGGGHHHHHHHHHHCS---S-------EEEEESC
T ss_pred HHHHHHHhcCC---CCcCEEEEECCCchHHHHHHHhcCCEEEEEECCHHHHHHHHHHhccCC---C-------eEEEECc
Confidence 44666666654 367899999999999999999999999999999999999999886321 1 3899999
Q ss_pred cccC---CCCccEEEEcccc
Q 020710 213 LESL---DGKYDTVVCLDVL 229 (322)
Q Consensus 213 ~~~~---~~~fD~V~~~~~l 229 (322)
+.+. +..||.|+++..+
T Consensus 105 ~l~~~~~~~~fD~Iv~NlPy 124 (295)
T 3gru_A 105 ALKVDLNKLDFNKVVANLPY 124 (295)
T ss_dssp TTTSCGGGSCCSEEEEECCG
T ss_pred hhhCCcccCCccEEEEeCcc
Confidence 9875 4579999987554
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.14 E-value=2.2e-10 Score=108.19 Aligned_cols=103 Identities=17% Similarity=0.135 Sum_probs=79.9
Q ss_pred CCCCeEEEECCCcccchHHHHhc--C-CEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccCC-----C
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQ--G-AIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESLD-----G 218 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~--~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~ 218 (322)
.++.+|||+|||+|..+..+++. + .+|+++|+|+.+++.+++++...+..+ +.+.++|+.... +
T Consensus 258 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~--------v~~~~~D~~~~~~~~~~~ 329 (450)
T 2yxl_A 258 KPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKI--------VKPLVKDARKAPEIIGEE 329 (450)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCS--------EEEECSCTTCCSSSSCSS
T ss_pred CCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCc--------EEEEEcChhhcchhhccC
Confidence 46789999999999999999986 3 789999999999999999998776532 388889987652 6
Q ss_pred CccEEEE------cccccccCcch-------H-------HHHHHHHHhccCCeEEEEEC
Q 020710 219 KYDTVVC------LDVLIHYPQSK-------A-------DGMIAHLASLAEKRLILSFA 257 (322)
Q Consensus 219 ~fD~V~~------~~~l~~~~~~~-------~-------~~~l~~l~~~~~~~~il~~~ 257 (322)
+||+|++ ..++++.|+.. + ..+++++.+++++||.+.+.
T Consensus 330 ~fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~ 388 (450)
T 2yxl_A 330 VADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYT 388 (450)
T ss_dssp CEEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred CCCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 8999996 33444444421 1 47889999988877766653
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=1.7e-10 Score=108.69 Aligned_cols=104 Identities=13% Similarity=0.122 Sum_probs=80.0
Q ss_pred CCCCeEEEECCCcccchHHHHhc---CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC----CCC
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQ---GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL----DGK 219 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~~ 219 (322)
.++.+|||+|||+|..+..+++. ..+|+++|+|+.+++.+++++...++. + .+.++|+.++ +++
T Consensus 100 ~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~--v-------~~~~~Da~~l~~~~~~~ 170 (464)
T 3m6w_A 100 KPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP--L-------AVTQAPPRALAEAFGTY 170 (464)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC--C-------EEECSCHHHHHHHHCSC
T ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe--E-------EEEECCHHHhhhhcccc
Confidence 36889999999999999999976 358999999999999999999887764 2 8889997654 688
Q ss_pred ccEEEEc------ccccccCcc-------h-------HHHHHHHHHhccCCeEEEEECCC
Q 020710 220 YDTVVCL------DVLIHYPQS-------K-------ADGMIAHLASLAEKRLILSFAPK 259 (322)
Q Consensus 220 fD~V~~~------~~l~~~~~~-------~-------~~~~l~~l~~~~~~~~il~~~~~ 259 (322)
||+|++. .++.+.|+. . ...+++.+.+++++||++.+...
T Consensus 171 FD~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTC 230 (464)
T 3m6w_A 171 FHRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTC 230 (464)
T ss_dssp EEEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEES
T ss_pred CCEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence 9999962 233333321 1 15788888888888887765433
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=1.3e-11 Score=109.08 Aligned_cols=109 Identities=17% Similarity=0.073 Sum_probs=69.6
Q ss_pred HHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceE--Ecc
Q 020710 135 ENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFE--VKD 212 (322)
Q Consensus 135 ~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~--~~d 212 (322)
.++..++......++.+|||||||+|.++..+++. .+|+|||+|+ |+..++++ ....+ ..-.++.|+ ++|
T Consensus 69 ~KL~~i~~~~~~~~g~~VLDlGcGtG~~s~~la~~-~~V~gVD~s~-m~~~a~~~----~~~~~--~~~~~v~~~~~~~D 140 (276)
T 2wa2_A 69 AKLAWIDERGGVELKGTVVDLGCGRGSWSYYAASQ-PNVREVKAYT-LGTSGHEK----PRLVE--TFGWNLITFKSKVD 140 (276)
T ss_dssp HHHHHHHHTTSCCCCEEEEEESCTTCHHHHHHHTS-TTEEEEEEEC-CCCTTSCC----CCCCC--CTTGGGEEEECSCC
T ss_pred HHHHHHHHcCCCCCCCEEEEeccCCCHHHHHHHHc-CCEEEEECch-hhhhhhhc----hhhhh--hcCCCeEEEeccCc
Confidence 33444444433346789999999999999999998 7899999998 64332211 00000 000023788 899
Q ss_pred cccC-CCCccEEEEcccccccCcchH-----HHHHHHHHhccCCeE
Q 020710 213 LESL-DGKYDTVVCLDVLIHYPQSKA-----DGMIAHLASLAEKRL 252 (322)
Q Consensus 213 ~~~~-~~~fD~V~~~~~l~~~~~~~~-----~~~l~~l~~~~~~~~ 252 (322)
+.++ +++||+|+|..+ ++.+.... ..+++.+.+++++||
T Consensus 141 ~~~l~~~~fD~Vvsd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG 185 (276)
T 2wa2_A 141 VTKMEPFQADTVLCDIG-ESNPTAAVEASRTLTVLNVISRWLEYNQ 185 (276)
T ss_dssp GGGCCCCCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHST
T ss_pred HhhCCCCCcCEEEECCC-cCCCchhhhHHHHHHHHHHHHHHhccCC
Confidence 9877 678999999877 44433211 136777777654333
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=99.12 E-value=1.2e-10 Score=102.13 Aligned_cols=96 Identities=14% Similarity=-0.016 Sum_probs=75.3
Q ss_pred CCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHh--hhccCCCCCCCCCceEEcccccCCCCccEEEE
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEE--LLADNGGEAPVMPKFEVKDLESLDGKYDTVVC 225 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~--~~~~~~~~~~~~~~~~~~d~~~~~~~fD~V~~ 225 (322)
.+.+|||||||+|..+..+++.+.+|+++|+++.|++.|++++... +..+ .+++++.+|+.+..++||+|++
T Consensus 72 ~~~~VL~iG~G~G~~~~~ll~~~~~v~~veid~~~i~~ar~~~~~~~~~~~~------~rv~~~~~D~~~~~~~fD~Ii~ 145 (262)
T 2cmg_A 72 ELKEVLIVDGFDLELAHQLFKYDTHIDFVQADEKILDSFISFFPHFHEVKNN------KNFTHAKQLLDLDIKKYDLIFC 145 (262)
T ss_dssp CCCEEEEESSCCHHHHHHHTTSSCEEEEECSCHHHHGGGTTTSTTHHHHHTC------TTEEEESSGGGSCCCCEEEEEE
T ss_pred CCCEEEEEeCCcCHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhhccccCC------CeEEEEechHHHHHhhCCEEEE
Confidence 4679999999999999999887778999999999999999876432 2211 1238888898664478999997
Q ss_pred cccccccCcchHHHHHHHHHhccCCeEEEEE
Q 020710 226 LDVLIHYPQSKADGMIAHLASLAEKRLILSF 256 (322)
Q Consensus 226 ~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~ 256 (322)
. .+++. .+++.+++.++++|++.+
T Consensus 146 d-----~~dp~--~~~~~~~~~L~pgG~lv~ 169 (262)
T 2cmg_A 146 L-----QEPDI--HRIDGLKRMLKEDGVFIS 169 (262)
T ss_dssp S-----SCCCH--HHHHHHHTTEEEEEEEEE
T ss_pred C-----CCChH--HHHHHHHHhcCCCcEEEE
Confidence 5 34554 589999999888887765
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=99.12 E-value=1.7e-10 Score=108.49 Aligned_cols=130 Identities=15% Similarity=0.154 Sum_probs=93.4
Q ss_pred CCCCeEEEECCCcccchHHHHhc---CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC----CCC
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQ---GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL----DGK 219 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~~ 219 (322)
.++.+|||+|||+|..+..+++. ..+|+++|+|+.+++.+++++...++.+ +.+.++|+..+ +++
T Consensus 104 ~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~n--------v~v~~~Da~~l~~~~~~~ 175 (456)
T 3m4x_A 104 KPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSN--------AIVTNHAPAELVPHFSGF 175 (456)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSS--------EEEECCCHHHHHHHHTTC
T ss_pred CCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCc--------eEEEeCCHHHhhhhcccc
Confidence 36889999999999999999976 3689999999999999999999887653 37888887654 689
Q ss_pred ccEEEEcc------cccccCcc-------h-------HHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCCCCCc
Q 020710 220 YDTVVCLD------VLIHYPQS-------K-------ADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKA 279 (322)
Q Consensus 220 fD~V~~~~------~l~~~~~~-------~-------~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (322)
||+|++.. ++.+-|+. . ...+++.+.+++++||.+.+...++..
T Consensus 176 FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~---------------- 239 (456)
T 3m4x_A 176 FDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTFAP---------------- 239 (456)
T ss_dssp EEEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCCCG----------------
T ss_pred CCEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeeccc----------------
Confidence 99999732 22221110 0 126788888888888877654333211
Q ss_pred cccccCCHHHHHHHHHHCCCEEEEE
Q 020710 280 TRAYLHAEADVERALQKVGWKIRKR 304 (322)
Q Consensus 280 ~~~~~~~~~~~~~~l~~aGf~vv~~ 304 (322)
.-+.+.++.++++.||+++..
T Consensus 240 ----eEne~vv~~~l~~~~~~l~~~ 260 (456)
T 3m4x_A 240 ----EENEEIISWLVENYPVTIEEI 260 (456)
T ss_dssp ----GGTHHHHHHHHHHSSEEEECC
T ss_pred ----ccCHHHHHHHHHhCCCEEEec
Confidence 114566777777777766654
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=99.12 E-value=1.3e-10 Score=102.52 Aligned_cols=103 Identities=13% Similarity=0.093 Sum_probs=77.8
Q ss_pred CCCCeEEEECCCcccchHHHHhc--C-CEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-------
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQ--G-AIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL------- 216 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~--~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~------- 216 (322)
.++.+|||+|||+|..+..+++. + .+|+++|+|+.+++.+++++...+..+ +.++++|+.++
T Consensus 82 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~--------v~~~~~D~~~~~~~~~~~ 153 (274)
T 3ajd_A 82 REDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLN--------TIIINADMRKYKDYLLKN 153 (274)
T ss_dssp CTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCS--------EEEEESCHHHHHHHHHHT
T ss_pred CCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCc--------EEEEeCChHhcchhhhhc
Confidence 36789999999999999999984 4 789999999999999999998776532 38899998654
Q ss_pred CCCccEEEEcc------cccccC----------cchHHHHHHHHHhccCCeEEEEEC
Q 020710 217 DGKYDTVVCLD------VLIHYP----------QSKADGMIAHLASLAEKRLILSFA 257 (322)
Q Consensus 217 ~~~fD~V~~~~------~l~~~~----------~~~~~~~l~~l~~~~~~~~il~~~ 257 (322)
+++||+|++.. ++.+-| ......+++++.+++++||.+.+.
T Consensus 154 ~~~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~s 210 (274)
T 3ajd_A 154 EIFFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYS 210 (274)
T ss_dssp TCCEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEE
T ss_pred cccCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEE
Confidence 56899999862 222110 011358899999988877766653
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=99.11 E-value=1.6e-11 Score=107.82 Aligned_cols=108 Identities=16% Similarity=0.058 Sum_probs=69.7
Q ss_pred HHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHH-hhhccCCCCCCCCCceE--Ec
Q 020710 135 ENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEE-ELLADNGGEAPVMPKFE--VK 211 (322)
Q Consensus 135 ~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~-~~~~~~~~~~~~~~~~~--~~ 211 (322)
.++..++......++.+|||||||+|.++..+++. .+|+|||+++ |+..+++.... .... .++.|+ ++
T Consensus 61 ~KL~~i~~~~~~~~g~~VLDlGcGtG~~s~~la~~-~~V~gvD~s~-m~~~a~~~~~~~~~~~-------~~v~~~~~~~ 131 (265)
T 2oxt_A 61 AKLAWMEERGYVELTGRVVDLGCGRGGWSYYAASR-PHVMDVRAYT-LGVGGHEVPRITESYG-------WNIVKFKSRV 131 (265)
T ss_dssp HHHHHHHHHTSCCCCEEEEEESCTTSHHHHHHHTS-TTEEEEEEEC-CCCSSCCCCCCCCBTT-------GGGEEEECSC
T ss_pred HHHHHHHHcCCCCCCCEEEEeCcCCCHHHHHHHHc-CcEEEEECch-hhhhhhhhhhhhhccC-------CCeEEEeccc
Confidence 34444444433456789999999999999999998 7899999998 53322111000 0000 023788 88
Q ss_pred ccccC-CCCccEEEEcccccccCcchH-----HHHHHHHHhccCCeE
Q 020710 212 DLESL-DGKYDTVVCLDVLIHYPQSKA-----DGMIAHLASLAEKRL 252 (322)
Q Consensus 212 d~~~~-~~~fD~V~~~~~l~~~~~~~~-----~~~l~~l~~~~~~~~ 252 (322)
|+.++ +++||+|+|..+ ++.+.... ..+++.+.+++++||
T Consensus 132 D~~~l~~~~fD~V~sd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG 177 (265)
T 2oxt_A 132 DIHTLPVERTDVIMCDVG-ESSPKWSVESERTIKILELLEKWKVKNP 177 (265)
T ss_dssp CTTTSCCCCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred CHhHCCCCCCcEEEEeCc-ccCCccchhHHHHHHHHHHHHHHhccCC
Confidence 99877 578999999877 55443221 136777777654443
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.11 E-value=4.2e-10 Score=93.92 Aligned_cols=103 Identities=15% Similarity=0.051 Sum_probs=71.8
Q ss_pred HHHHHHhhhcC-CCCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEccc
Q 020710 135 ENTMQMLNDEG-SLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDL 213 (322)
Q Consensus 135 ~~~~~~l~~~~-~~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~ 213 (322)
-++++++.... ..++.+|||+|||+|.++..+++.+.+|+|+|+++.. .. .++.++++|+
T Consensus 11 ~KL~ei~~~~~~~~~g~~VLDlG~G~G~~s~~la~~~~~V~gvD~~~~~-----------~~--------~~v~~~~~D~ 71 (191)
T 3dou_A 11 FKLEFLLDRYRVVRKGDAVIEIGSSPGGWTQVLNSLARKIISIDLQEME-----------EI--------AGVRFIRCDI 71 (191)
T ss_dssp HHHHHHHHHHCCSCTTCEEEEESCTTCHHHHHHTTTCSEEEEEESSCCC-----------CC--------TTCEEEECCT
T ss_pred HHHHHHHHHcCCCCCCCEEEEEeecCCHHHHHHHHcCCcEEEEeccccc-----------cC--------CCeEEEEccc
Confidence 45555555432 2467899999999999999999998899999999741 11 1248999998
Q ss_pred ccCC--------------CCccEEEEccccccc----Cc-----chHHHHHHHHHhccCCeEEEEE
Q 020710 214 ESLD--------------GKYDTVVCLDVLIHY----PQ-----SKADGMIAHLASLAEKRLILSF 256 (322)
Q Consensus 214 ~~~~--------------~~fD~V~~~~~l~~~----~~-----~~~~~~l~~l~~~~~~~~il~~ 256 (322)
.+.. ++||+|++....... .+ +....+++.+.+++++||.+.+
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~ 137 (191)
T 3dou_A 72 FKETIFDDIDRALREEGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLL 137 (191)
T ss_dssp TSSSHHHHHHHHHHHHTCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred cCHHHHHHHHHHhhcccCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEE
Confidence 7652 599999996532211 11 1124667777888877776654
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=99.09 E-value=5.1e-10 Score=105.10 Aligned_cols=103 Identities=15% Similarity=0.154 Sum_probs=80.6
Q ss_pred CCCCeEEEECCCcccchHHHHhcC--CEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-----CCC
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQG--AIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-----DGK 219 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-----~~~ 219 (322)
.++.+|||+|||+|..+..+++.+ .+|+++|+|+.+++.+++++...+... .+.++|+.+. +++
T Consensus 245 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~~---------~~~~~D~~~~~~~~~~~~ 315 (429)
T 1sqg_A 245 QNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKA---------TVKQGDGRYPSQWCGEQQ 315 (429)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCC---------EEEECCTTCTHHHHTTCC
T ss_pred CCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCCe---------EEEeCchhhchhhcccCC
Confidence 467899999999999999999874 689999999999999999998776543 8899998765 368
Q ss_pred ccEEEEc------ccccccCcch-------H-------HHHHHHHHhccCCeEEEEECC
Q 020710 220 YDTVVCL------DVLIHYPQSK-------A-------DGMIAHLASLAEKRLILSFAP 258 (322)
Q Consensus 220 fD~V~~~------~~l~~~~~~~-------~-------~~~l~~l~~~~~~~~il~~~~ 258 (322)
||+|++. .++++.|+.. + ..+++++.+++++||.+.+..
T Consensus 316 fD~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvyst 374 (429)
T 1sqg_A 316 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYAT 374 (429)
T ss_dssp EEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred CCEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 9999962 3444444311 1 478888888888877776543
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.08 E-value=3.5e-10 Score=104.17 Aligned_cols=83 Identities=17% Similarity=0.242 Sum_probs=65.8
Q ss_pred hHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEc
Q 020710 132 KTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVK 211 (322)
Q Consensus 132 ~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (322)
.++..+++++.. .+.+|||+|||+|.++..+++.+.+|+|+|+|+.+++.|++++...++.+ ++|+++
T Consensus 201 ~l~~~~~~~~~~----~~~~vLDl~cG~G~~~l~la~~~~~V~gvd~~~~ai~~a~~n~~~ng~~~--------v~~~~~ 268 (369)
T 3bt7_A 201 QMLEWALDVTKG----SKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDN--------VQIIRM 268 (369)
T ss_dssp HHHHHHHHHTTT----CCSEEEEESCTTSHHHHHHGGGSSEEEEECCCHHHHHHHHHHHHHTTCCS--------EEEECC
T ss_pred HHHHHHHHHhhc----CCCEEEEccCCCCHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCCCc--------eEEEEC
Confidence 444555555543 25789999999999999999887899999999999999999998776532 389999
Q ss_pred ccccC----C---------------CCccEEEEc
Q 020710 212 DLESL----D---------------GKYDTVVCL 226 (322)
Q Consensus 212 d~~~~----~---------------~~fD~V~~~ 226 (322)
|+.+. . ++||+|++.
T Consensus 269 d~~~~~~~~~~~~~~~~l~~~~~~~~~fD~Vv~d 302 (369)
T 3bt7_A 269 AAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVD 302 (369)
T ss_dssp CSHHHHHHHSSCCCCTTGGGSCGGGCCEEEEEEC
T ss_pred CHHHHHHHHhhccccccccccccccCCCCEEEEC
Confidence 98664 1 279999864
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.08 E-value=4.7e-10 Score=93.86 Aligned_cols=102 Identities=12% Similarity=0.040 Sum_probs=70.0
Q ss_pred HHHHHhhhcC-CCCCCeEEEECCCcccchHHHHhc----CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEE
Q 020710 136 NTMQMLNDEG-SLKGIAVCDAGCGTGSLAIPLAKQ----GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEV 210 (322)
Q Consensus 136 ~~~~~l~~~~-~~~~~~VLDvGcG~G~~~~~la~~----~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~ 210 (322)
++++.+.... ..++.+|||+|||+|.++..+++. +.+|+|+|+|+.+ .. .++.+.+
T Consensus 9 kl~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~-----------~~--------~~v~~~~ 69 (201)
T 2plw_A 9 KLIELDNKYLFLKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD-----------PI--------PNVYFIQ 69 (201)
T ss_dssp HHHHHHHHHCCCCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC-----------CC--------TTCEEEE
T ss_pred HHHHHHHHcCCCCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC-----------CC--------CCceEEE
Confidence 3444444322 245679999999999999999986 3689999999831 01 1137888
Q ss_pred cccccC----------------------------CCCccEEEEcccccccC----cch-----HHHHHHHHHhccCCeEE
Q 020710 211 KDLESL----------------------------DGKYDTVVCLDVLIHYP----QSK-----ADGMIAHLASLAEKRLI 253 (322)
Q Consensus 211 ~d~~~~----------------------------~~~fD~V~~~~~l~~~~----~~~-----~~~~l~~l~~~~~~~~i 253 (322)
+|+.+. +++||+|++..++++.. +.. ...+++.+.+++++||.
T Consensus 70 ~d~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~ 149 (201)
T 2plw_A 70 GEIGKDNMNNIKNINYIDNMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGT 149 (201)
T ss_dssp CCTTTTSSCCC-----------CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEE
T ss_pred ccccchhhhhhccccccccccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCE
Confidence 887653 35899999988776532 211 12478888888877776
Q ss_pred EEE
Q 020710 254 LSF 256 (322)
Q Consensus 254 l~~ 256 (322)
+.+
T Consensus 150 lv~ 152 (201)
T 2plw_A 150 YIV 152 (201)
T ss_dssp EEE
T ss_pred EEE
Confidence 654
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=5.7e-10 Score=98.06 Aligned_cols=95 Identities=15% Similarity=0.137 Sum_probs=72.4
Q ss_pred HHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcc
Q 020710 133 TVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKD 212 (322)
Q Consensus 133 ~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d 212 (322)
.++++++.+... ++ +|||||||+|.++..|++.+.+|+++|+|+.|++.+++++.. .+ ++++++|
T Consensus 35 i~~~Iv~~~~~~---~~-~VLEIG~G~G~lt~~L~~~~~~V~avEid~~~~~~l~~~~~~----~~-------v~vi~~D 99 (271)
T 3fut_A 35 HLRRIVEAARPF---TG-PVFEVGPGLGALTRALLEAGAEVTAIEKDLRLRPVLEETLSG----LP-------VRLVFQD 99 (271)
T ss_dssp HHHHHHHHHCCC---CS-CEEEECCTTSHHHHHHHHTTCCEEEEESCGGGHHHHHHHTTT----SS-------EEEEESC
T ss_pred HHHHHHHhcCCC---CC-eEEEEeCchHHHHHHHHHcCCEEEEEECCHHHHHHHHHhcCC----CC-------EEEEECC
Confidence 446666666543 56 999999999999999999999999999999999999988763 12 2899999
Q ss_pred cccCC----CCccEEEEcccccccCcchHHHHHHH
Q 020710 213 LESLD----GKYDTVVCLDVLIHYPQSKADGMIAH 243 (322)
Q Consensus 213 ~~~~~----~~fD~V~~~~~l~~~~~~~~~~~l~~ 243 (322)
+.+.+ ..+|.|+++--. ++..+.+..++..
T Consensus 100 ~l~~~~~~~~~~~~iv~NlPy-~iss~il~~ll~~ 133 (271)
T 3fut_A 100 ALLYPWEEVPQGSLLVANLPY-HIATPLVTRLLKT 133 (271)
T ss_dssp GGGSCGGGSCTTEEEEEEECS-SCCHHHHHHHHHH
T ss_pred hhhCChhhccCccEEEecCcc-cccHHHHHHHhcC
Confidence 87762 368888876554 5555445555544
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.03 E-value=6.1e-10 Score=97.11 Aligned_cols=80 Identities=20% Similarity=0.229 Sum_probs=62.9
Q ss_pred HHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcc
Q 020710 133 TVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKD 212 (322)
Q Consensus 133 ~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d 212 (322)
.++++++.+... ++.+|||||||+|.++..|++.+.+|+++|+|+.|++.+++++... .+ ++++++|
T Consensus 17 i~~~iv~~~~~~---~~~~VLEIG~G~G~lt~~La~~~~~V~avEid~~~~~~~~~~~~~~---~~-------v~~i~~D 83 (255)
T 3tqs_A 17 VLQKIVSAIHPQ---KTDTLVEIGPGRGALTDYLLTECDNLALVEIDRDLVAFLQKKYNQQ---KN-------ITIYQND 83 (255)
T ss_dssp HHHHHHHHHCCC---TTCEEEEECCTTTTTHHHHTTTSSEEEEEECCHHHHHHHHHHHTTC---TT-------EEEEESC
T ss_pred HHHHHHHhcCCC---CcCEEEEEcccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHhhC---CC-------cEEEEcc
Confidence 445666666543 6789999999999999999999999999999999999999987641 11 2899999
Q ss_pred cccC-------CCCccEEEEc
Q 020710 213 LESL-------DGKYDTVVCL 226 (322)
Q Consensus 213 ~~~~-------~~~fD~V~~~ 226 (322)
+.+. .++|| |+++
T Consensus 84 ~~~~~~~~~~~~~~~~-vv~N 103 (255)
T 3tqs_A 84 ALQFDFSSVKTDKPLR-VVGN 103 (255)
T ss_dssp TTTCCGGGSCCSSCEE-EEEE
T ss_pred hHhCCHHHhccCCCeE-EEec
Confidence 8775 14577 5543
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.02 E-value=1.5e-09 Score=100.60 Aligned_cols=105 Identities=18% Similarity=0.254 Sum_probs=75.6
Q ss_pred CCCCeEEEECCCcccchHHHHhcC----------------------------------------CEEEEEeCCHHHHHHH
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQG----------------------------------------AIVSASDISAAMVAEA 186 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~~----------------------------------------~~v~gvD~s~~~l~~a 186 (322)
.++..|||++||+|.+++.++..+ .+|+|+|+|+.|++.|
T Consensus 200 ~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~al~~A 279 (393)
T 3k0b_A 200 HPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDARLIEIA 279 (393)
T ss_dssp CTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECCHHHHHHH
Confidence 457899999999999998887653 3599999999999999
Q ss_pred HHHhHHhhhccCCCCCCCCCceEEcccccC--CCCccEEEEccccc-ccCc-chHHHHHHHHHhc---cCCeEEEEECC
Q 020710 187 RKKAEEELLADNGGEAPVMPKFEVKDLESL--DGKYDTVVCLDVLI-HYPQ-SKADGMIAHLASL---AEKRLILSFAP 258 (322)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~fD~V~~~~~l~-~~~~-~~~~~~l~~l~~~---~~~~~il~~~~ 258 (322)
++++...++.+++ .|.++|+.++ +++||+|+++--+. .+.+ +.+..+++.+.+. .+++.+.+++.
T Consensus 280 r~Na~~~gl~~~I-------~~~~~D~~~~~~~~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~ 351 (393)
T 3k0b_A 280 KQNAVEAGLGDLI-------TFRQLQVADFQTEDEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMPTWSVYVLTS 351 (393)
T ss_dssp HHHHHHTTCTTCS-------EEEECCGGGCCCCCCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTCTTCEEEEEEC
T ss_pred HHHHHHcCCCCce-------EEEECChHhCCCCCCCCEEEECCCCccccCCchhHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 9999988876544 8999999876 57899999985432 1211 2344455544432 33444444443
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=99.01 E-value=7.4e-10 Score=96.08 Aligned_cols=60 Identities=20% Similarity=0.321 Sum_probs=51.7
Q ss_pred CCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL 216 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 216 (322)
.++.+|||||||+|.++..+++.+.+|+|+|+|+.|++.+++++... .+ ++++++|+.+.
T Consensus 29 ~~~~~VLDiG~G~G~lt~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~---~~-------v~~~~~D~~~~ 88 (244)
T 1qam_A 29 NEHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLCKTTENKLVDH---DN-------FQVLNKDILQF 88 (244)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHTTTC---CS-------EEEECCCGGGC
T ss_pred CCCCEEEEEeCCchHHHHHHHHcCCeEEEEECCHHHHHHHHHhhccC---CC-------eEEEEChHHhC
Confidence 36789999999999999999999999999999999999999887532 11 38999998876
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=98.98 E-value=3e-09 Score=98.16 Aligned_cols=105 Identities=20% Similarity=0.222 Sum_probs=76.9
Q ss_pred CCCCeEEEECCCcccchHHHHhcC----------------------------------------CEEEEEeCCHHHHHHH
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQG----------------------------------------AIVSASDISAAMVAEA 186 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~~----------------------------------------~~v~gvD~s~~~l~~a 186 (322)
.++..|||.+||+|.+++.++..+ .+++|+|+|+.|++.|
T Consensus 193 ~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~~al~~A 272 (384)
T 3ldg_A 193 FPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGRMVEIA 272 (384)
T ss_dssp CTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHH
T ss_pred CCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCHHHHHHH
Confidence 467899999999999998887652 3599999999999999
Q ss_pred HHHhHHhhhccCCCCCCCCCceEEcccccC--CCCccEEEEccccc-ccCc-chHHHHHHHHHhc---cCCeEEEEECC
Q 020710 187 RKKAEEELLADNGGEAPVMPKFEVKDLESL--DGKYDTVVCLDVLI-HYPQ-SKADGMIAHLASL---AEKRLILSFAP 258 (322)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~fD~V~~~~~l~-~~~~-~~~~~~l~~l~~~---~~~~~il~~~~ 258 (322)
++++...++.+++ +|.++|+.++ ..+||+|+++--+. -+.+ +.+..+++.+.+. .+++.+.++.+
T Consensus 273 r~Na~~~gl~~~I-------~~~~~D~~~l~~~~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~ 344 (384)
T 3ldg_A 273 RKNAREVGLEDVV-------KLKQMRLQDFKTNKINGVLISNPPYGERLLDDKAVDILYNEMGETFAPLKTWSQFILTN 344 (384)
T ss_dssp HHHHHHTTCTTTE-------EEEECCGGGCCCCCCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCTTSEEEEEES
T ss_pred HHHHHHcCCCCce-------EEEECChHHCCccCCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCCCcEEEEEEC
Confidence 9999988876544 8999999876 46899999985442 1222 3355666655543 23444444443
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=6.4e-10 Score=99.22 Aligned_cols=84 Identities=18% Similarity=0.216 Sum_probs=69.3
Q ss_pred hHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceE
Q 020710 132 KTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFE 209 (322)
Q Consensus 132 ~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~ 209 (322)
.+++.+++.+... ++.+|||+|||+|.++..+++. +.+|+|+|+|+.|++.|++++...+ .++ .|+
T Consensus 13 vLl~e~l~~L~~~---~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g--~~v-------~~v 80 (301)
T 1m6y_A 13 VMVREVIEFLKPE---DEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS--DRV-------SLF 80 (301)
T ss_dssp TTHHHHHHHHCCC---TTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT--TTE-------EEE
T ss_pred HHHHHHHHhcCCC---CCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC--CcE-------EEE
Confidence 4567788887643 5789999999999999999987 5799999999999999999987655 223 899
Q ss_pred EcccccCC--------CCccEEEEcc
Q 020710 210 VKDLESLD--------GKYDTVVCLD 227 (322)
Q Consensus 210 ~~d~~~~~--------~~fD~V~~~~ 227 (322)
++|+.+++ ++||.|++..
T Consensus 81 ~~d~~~l~~~l~~~g~~~~D~Vl~D~ 106 (301)
T 1m6y_A 81 KVSYREADFLLKTLGIEKVDGILMDL 106 (301)
T ss_dssp ECCGGGHHHHHHHTTCSCEEEEEEEC
T ss_pred ECCHHHHHHHHHhcCCCCCCEEEEcC
Confidence 99987751 5899999754
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.98 E-value=1.2e-09 Score=103.72 Aligned_cols=101 Identities=14% Similarity=0.135 Sum_probs=77.9
Q ss_pred CCCeEEEECCCcccchHHHHhc---CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC----CCCc
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQ---GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL----DGKY 220 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~~f 220 (322)
++.+|||+|||+|..+..+++. +.+|+++|+|+.+++.+++++...+..+ +.++++|+..+ +++|
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~n--------v~~~~~D~~~~~~~~~~~f 188 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISN--------VALTHFDGRVFGAAVPEMF 188 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCS--------EEEECCCSTTHHHHSTTCE
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCc--------EEEEeCCHHHhhhhccccC
Confidence 5789999999999999999986 3689999999999999999998877643 37888998764 5789
Q ss_pred cEEEEc------ccccccCcc-------h-------HHHHHHHHHhccCCeEEEEE
Q 020710 221 DTVVCL------DVLIHYPQS-------K-------ADGMIAHLASLAEKRLILSF 256 (322)
Q Consensus 221 D~V~~~------~~l~~~~~~-------~-------~~~~l~~l~~~~~~~~il~~ 256 (322)
|.|++. .++.+.|+. . ...+++++.+++++||.+.+
T Consensus 189 D~Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~Lvy 244 (479)
T 2frx_A 189 DAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVY 244 (479)
T ss_dssp EEEEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred CEEEECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEE
Confidence 999982 233333321 0 13678888888877776654
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=98.97 E-value=2.4e-09 Score=98.98 Aligned_cols=106 Identities=17% Similarity=0.225 Sum_probs=77.1
Q ss_pred CCCCeEEEECCCcccchHHHHhcC----------------------------------------CEEEEEeCCHHHHHHH
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQG----------------------------------------AIVSASDISAAMVAEA 186 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~~----------------------------------------~~v~gvD~s~~~l~~a 186 (322)
.++.+|||++||+|.+++.++..+ .+|+|+|+|+.|++.|
T Consensus 194 ~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~ai~~A 273 (385)
T 3ldu_A 194 KAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDIDEESIDIA 273 (385)
T ss_dssp CTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESCHHHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECCHHHHHHH
Confidence 467899999999999999887652 4699999999999999
Q ss_pred HHHhHHhhhccCCCCCCCCCceEEcccccC--CCCccEEEEcccccc-cC-cchHHHHHHHHHhc---cCCeEEEEECCC
Q 020710 187 RKKAEEELLADNGGEAPVMPKFEVKDLESL--DGKYDTVVCLDVLIH-YP-QSKADGMIAHLASL---AEKRLILSFAPK 259 (322)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~fD~V~~~~~l~~-~~-~~~~~~~l~~l~~~---~~~~~il~~~~~ 259 (322)
++++...++...+ +|.++|+.++ +++||+|+++--+.. +. .+.+..+++.+.+. .+++.+.+++.+
T Consensus 274 r~Na~~~gl~~~i-------~~~~~D~~~l~~~~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~~ 346 (385)
T 3ldu_A 274 RENAEIAGVDEYI-------EFNVGDATQFKSEDEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLKNWSYYLITSY 346 (385)
T ss_dssp HHHHHHHTCGGGE-------EEEECCGGGCCCSCBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSBSCEEEEEESC
T ss_pred HHHHHHcCCCCce-------EEEECChhhcCcCCCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCCCCEEEEEECC
Confidence 9999988775433 8999999876 578999999766432 22 12345556555443 234444444433
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=2.4e-10 Score=102.34 Aligned_cols=112 Identities=10% Similarity=0.028 Sum_probs=71.8
Q ss_pred HHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCCEEEEEeC----CHHHHHHHHHHhHHhhhccCCCCCCCCCceE
Q 020710 134 VENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDI----SAAMVAEARKKAEEELLADNGGEAPVMPKFE 209 (322)
Q Consensus 134 ~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~----s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~ 209 (322)
..++..++......++.+|||||||+|.++..+++. .+|+|||+ ++.+++... ....+. ..+.|+
T Consensus 68 a~KL~~i~~~~~~~~g~~VLDlGcG~G~~s~~la~~-~~V~gvD~~~~~~~~~~~~~~--~~~~~~--------~~v~~~ 136 (305)
T 2p41_A 68 SAKLRWFVERNLVTPEGKVVDLGCGRGGWSYYCGGL-KNVREVKGLTKGGPGHEEPIP--MSTYGW--------NLVRLQ 136 (305)
T ss_dssp HHHHHHHHHTTSSCCCEEEEEETCTTSHHHHHHHTS-TTEEEEEEECCCSTTSCCCCC--CCSTTG--------GGEEEE
T ss_pred HHHHHHHHHcCCCCCCCEEEEEcCCCCHHHHHHHhc-CCEEEEeccccCchhHHHHHH--hhhcCC--------CCeEEE
Confidence 345555555432346789999999999999999998 58999999 564442111 010111 123788
Q ss_pred Ec-ccccC-CCCccEEEEccccc---ccCcch-HHHHHHHHHhccCCeEEEEE
Q 020710 210 VK-DLESL-DGKYDTVVCLDVLI---HYPQSK-ADGMIAHLASLAEKRLILSF 256 (322)
Q Consensus 210 ~~-d~~~~-~~~fD~V~~~~~l~---~~~~~~-~~~~l~~l~~~~~~~~il~~ 256 (322)
++ |+..+ +++||+|+|..+++ +..+.. ...+++.+.+++++||.+.+
T Consensus 137 ~~~D~~~l~~~~fD~V~sd~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~ 189 (305)
T 2p41_A 137 SGVDVFFIPPERCDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCV 189 (305)
T ss_dssp CSCCTTTSCCCCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEE
T ss_pred eccccccCCcCCCCEEEECCccccCcchhhHHHHHHHHHHHHHHhCCCCEEEE
Confidence 88 88776 67899999977653 222211 11467778787766665544
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.92 E-value=3.6e-09 Score=88.00 Aligned_cols=91 Identities=12% Similarity=0.099 Sum_probs=64.9
Q ss_pred CCCCeEEEECCCcccchHHHHhc-C----------CEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceE-Ecccc
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQ-G----------AIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFE-VKDLE 214 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~-~----------~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~-~~d~~ 214 (322)
.++.+|||+|||+|.++..+++. + .+|+|+|+|+.+ .. .++.+. .+|+.
T Consensus 21 ~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~-----------~~--------~~~~~~~~~d~~ 81 (196)
T 2nyu_A 21 RPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF-----------PL--------EGATFLCPADVT 81 (196)
T ss_dssp CTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC-----------CC--------TTCEEECSCCTT
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc-----------cC--------CCCeEEEeccCC
Confidence 46789999999999999999987 4 789999999842 01 113777 88865
Q ss_pred cC-----------CCCccEEEEcccccc----cCcch-----HHHHHHHHHhccCCeEEEEE
Q 020710 215 SL-----------DGKYDTVVCLDVLIH----YPQSK-----ADGMIAHLASLAEKRLILSF 256 (322)
Q Consensus 215 ~~-----------~~~fD~V~~~~~l~~----~~~~~-----~~~~l~~l~~~~~~~~il~~ 256 (322)
.. +++||+|+|...++. ..+.. ...+++++.+++++||.+.+
T Consensus 82 ~~~~~~~~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~ 143 (196)
T 2nyu_A 82 DPRTSQRILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLC 143 (196)
T ss_dssp SHHHHHHHHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred CHHHHHHHHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEE
Confidence 43 358999999765432 22211 14788888888877776654
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.88 E-value=2.1e-09 Score=99.38 Aligned_cols=71 Identities=15% Similarity=0.041 Sum_probs=61.9
Q ss_pred CCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHh--hhccCCCCCCCCCceEEcccccC-----CCCc
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEE--LLADNGGEAPVMPKFEVKDLESL-----DGKY 220 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~--~~~~~~~~~~~~~~~~~~d~~~~-----~~~f 220 (322)
++.+|||+|||+|..+..+++.+.+|++||+|+.|++.|++++... +.. + ++|+++|+.+. +++|
T Consensus 93 ~g~~VLDLgcG~G~~al~LA~~g~~V~~VD~s~~~l~~Ar~N~~~~~~gl~-~-------i~~i~~Da~~~L~~~~~~~f 164 (410)
T 3ll7_A 93 EGTKVVDLTGGLGIDFIALMSKASQGIYIERNDETAVAARHNIPLLLNEGK-D-------VNILTGDFKEYLPLIKTFHP 164 (410)
T ss_dssp TTCEEEESSCSSSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHSCTTC-E-------EEEEESCGGGSHHHHHHHCC
T ss_pred CCCEEEEeCCCchHHHHHHHhcCCEEEEEECCHHHHHHHHHhHHHhccCCC-c-------EEEEECcHHHhhhhccCCCc
Confidence 3789999999999999999999999999999999999999999876 552 2 38999999874 2589
Q ss_pred cEEEEc
Q 020710 221 DTVVCL 226 (322)
Q Consensus 221 D~V~~~ 226 (322)
|+|++.
T Consensus 165 DvV~lD 170 (410)
T 3ll7_A 165 DYIYVD 170 (410)
T ss_dssp SEEEEC
T ss_pred eEEEEC
Confidence 999995
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=98.86 E-value=4.2e-09 Score=92.96 Aligned_cols=69 Identities=14% Similarity=0.268 Sum_probs=55.9
Q ss_pred HHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCCE----EEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCce
Q 020710 133 TVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAI----VSASDISAAMVAEARKKAEEELLADNGGEAPVMPKF 208 (322)
Q Consensus 133 ~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~----v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~ 208 (322)
.++++++.+... ++.+|||||||+|.++..|++.+.+ |+|+|+|+.|++.++++. .. + +++
T Consensus 30 i~~~iv~~~~~~---~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~---~~--~-------v~~ 94 (279)
T 3uzu_A 30 VIDAIVAAIRPE---RGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF---GE--L-------LEL 94 (279)
T ss_dssp HHHHHHHHHCCC---TTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH---GG--G-------EEE
T ss_pred HHHHHHHhcCCC---CcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc---CC--C-------cEE
Confidence 346666666543 6789999999999999999998777 999999999999999883 11 1 289
Q ss_pred EEcccccC
Q 020710 209 EVKDLESL 216 (322)
Q Consensus 209 ~~~d~~~~ 216 (322)
+++|+.++
T Consensus 95 i~~D~~~~ 102 (279)
T 3uzu_A 95 HAGDALTF 102 (279)
T ss_dssp EESCGGGC
T ss_pred EECChhcC
Confidence 99998776
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.85 E-value=7.1e-09 Score=97.77 Aligned_cols=115 Identities=14% Similarity=0.168 Sum_probs=83.0
Q ss_pred hHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc---------------CCEEEEEeCCHHHHHHHHHHhHHhhhc
Q 020710 132 KTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ---------------GAIVSASDISAAMVAEARKKAEEELLA 196 (322)
Q Consensus 132 ~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~---------------~~~v~gvD~s~~~l~~a~~~~~~~~~~ 196 (322)
..++.+++++.. .++.+|||+|||+|.++..+++. +.+++|+|+++.+++.|+.++...+..
T Consensus 158 ~v~~~mv~~l~~---~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~ 234 (445)
T 2okc_A 158 PLIQAMVDCINP---QMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIG 234 (445)
T ss_dssp HHHHHHHHHHCC---CTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHhCC---CCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCC
Confidence 345566666643 35679999999999999888764 357999999999999999988766653
Q ss_pred cCCCCCCCCCceEEcccccC--CCCccEEEEcccccccCcc---------------hHHHHHHHHHhccCCeEEEE
Q 020710 197 DNGGEAPVMPKFEVKDLESL--DGKYDTVVCLDVLIHYPQS---------------KADGMIAHLASLAEKRLILS 255 (322)
Q Consensus 197 ~~~~~~~~~~~~~~~d~~~~--~~~fD~V~~~~~l~~~~~~---------------~~~~~l~~l~~~~~~~~il~ 255 (322)
. ..+.+.++|.... .++||+|+++..+.+.... ....+++++.+.++++|.+.
T Consensus 235 ~------~~~~i~~gD~l~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a 304 (445)
T 2okc_A 235 T------DRSPIVCEDSLEKEPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAA 304 (445)
T ss_dssp S------SCCSEEECCTTTSCCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEE
T ss_pred c------CCCCEeeCCCCCCcccCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEE
Confidence 1 0138899997665 3589999998776654321 01367888888776665443
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=98.82 E-value=5.8e-09 Score=90.83 Aligned_cols=88 Identities=17% Similarity=0.094 Sum_probs=65.3
Q ss_pred HHHHHHhhhcCCCCC--CeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhh--------hccCCCCCCC
Q 020710 135 ENTMQMLNDEGSLKG--IAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEEL--------LADNGGEAPV 204 (322)
Q Consensus 135 ~~~~~~l~~~~~~~~--~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~--------~~~~~~~~~~ 204 (322)
+.+.+.+... ++ .+|||+|||+|..+..++..|++|+++|+++.+++.+++.+.... ...++
T Consensus 76 e~l~~al~l~---~g~~~~VLDl~~G~G~dal~lA~~g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i----- 147 (258)
T 2oyr_A 76 EAVAKAVGIK---GDYLPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERL----- 147 (258)
T ss_dssp SHHHHHTTCB---TTBCCCEEETTCTTCHHHHHHHHHTCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHE-----
T ss_pred HHHHHHhccc---CCCCCEEEEcCCcCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCE-----
Confidence 3444555432 35 799999999999999999999999999999998777766654321 21222
Q ss_pred CCceEEcccccC----CCCccEEEEccccccc
Q 020710 205 MPKFEVKDLESL----DGKYDTVVCLDVLIHY 232 (322)
Q Consensus 205 ~~~~~~~d~~~~----~~~fD~V~~~~~l~~~ 232 (322)
+++++|..+. ...||+|++.-.+.+-
T Consensus 148 --~~~~~D~~~~L~~~~~~fDvV~lDP~y~~~ 177 (258)
T 2oyr_A 148 --QLIHASSLTALTDITPRPQVVYLDPMFPHK 177 (258)
T ss_dssp --EEEESCHHHHSTTCSSCCSEEEECCCCCCC
T ss_pred --EEEECCHHHHHHhCcccCCEEEEcCCCCCc
Confidence 8999997653 4579999998877553
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=5.3e-09 Score=97.72 Aligned_cols=77 Identities=10% Similarity=0.137 Sum_probs=59.8
Q ss_pred hHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc---CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCce
Q 020710 132 KTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ---GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKF 208 (322)
Q Consensus 132 ~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~ 208 (322)
..++.+++++.. .++.+|||+|||+|.++..++++ +.+++|+|+++.+++.| .+ +.+
T Consensus 26 ~l~~~~~~~~~~---~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a----------~~-------~~~ 85 (421)
T 2ih2_A 26 EVVDFMVSLAEA---PRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP----------PW-------AEG 85 (421)
T ss_dssp HHHHHHHHHCCC---CTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC----------TT-------EEE
T ss_pred HHHHHHHHhhcc---CCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC----------CC-------CcE
Confidence 344566666643 24669999999999999999974 57899999999998777 11 288
Q ss_pred EEcccccC--CCCccEEEEccc
Q 020710 209 EVKDLESL--DGKYDTVVCLDV 228 (322)
Q Consensus 209 ~~~d~~~~--~~~fD~V~~~~~ 228 (322)
+++|+.+. .++||+|+++-.
T Consensus 86 ~~~D~~~~~~~~~fD~Ii~NPP 107 (421)
T 2ih2_A 86 ILADFLLWEPGEAFDLILGNPP 107 (421)
T ss_dssp EESCGGGCCCSSCEEEEEECCC
T ss_pred EeCChhhcCccCCCCEEEECcC
Confidence 99998776 478999999643
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=98.81 E-value=3.5e-09 Score=91.98 Aligned_cols=69 Identities=20% Similarity=0.272 Sum_probs=55.1
Q ss_pred HHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcC-CEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEc
Q 020710 133 TVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQG-AIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVK 211 (322)
Q Consensus 133 ~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (322)
.++++++.+... ++.+|||||||+|.++..+++.+ .+|+|+|+|+.|++.++++ . . .+ ++++++
T Consensus 19 i~~~iv~~~~~~---~~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~~~~~~~-~--~--~~-------v~~i~~ 83 (249)
T 3ftd_A 19 VLKKIAEELNIE---EGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENLKSI-G--D--ER-------LEVINE 83 (249)
T ss_dssp HHHHHHHHTTCC---TTCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHHHHHTTS-C--C--TT-------EEEECS
T ss_pred HHHHHHHhcCCC---CcCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHHHHHHhc-c--C--CC-------eEEEEc
Confidence 345666665543 57899999999999999999995 8999999999999999876 2 1 11 289999
Q ss_pred ccccC
Q 020710 212 DLESL 216 (322)
Q Consensus 212 d~~~~ 216 (322)
|+.+.
T Consensus 84 D~~~~ 88 (249)
T 3ftd_A 84 DASKF 88 (249)
T ss_dssp CTTTC
T ss_pred chhhC
Confidence 98776
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=2e-08 Score=88.92 Aligned_cols=124 Identities=15% Similarity=0.135 Sum_probs=80.3
Q ss_pred HHHHHHhh--hcCCCCCCeEEEECCCc------ccchHHHHhc---CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCC
Q 020710 135 ENTMQMLN--DEGSLKGIAVCDAGCGT------GSLAIPLAKQ---GAIVSASDISAAMVAEARKKAEEELLADNGGEAP 203 (322)
Q Consensus 135 ~~~~~~l~--~~~~~~~~~VLDvGcG~------G~~~~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~ 203 (322)
..+.+++. .....++.+|||+|||+ |. ..+++. +.+|+|+|+|+. + . +
T Consensus 48 ~~l~~~l~~~~l~l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~-v------------~-~----- 106 (290)
T 2xyq_A 48 TQLCQYLNTLTLAVPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF-V------------S-D----- 106 (290)
T ss_dssp HHHHHHHTTSCCCCCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC-B------------C-S-----
T ss_pred HHHHHHHHHhhcCCCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC-C------------C-C-----
Confidence 33445552 12235678999999954 66 444443 478999999987 1 1 1
Q ss_pred CCCce-EEcccccC--CCCccEEEEcccccc--------cC-cchHHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhc
Q 020710 204 VMPKF-EVKDLESL--DGKYDTVVCLDVLIH--------YP-QSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGE 271 (322)
Q Consensus 204 ~~~~~-~~~d~~~~--~~~fD~V~~~~~l~~--------~~-~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~ 271 (322)
++| +++|+.++ .++||+|++....+. .. ......+++.+.+++++||.+.+..
T Consensus 107 --v~~~i~gD~~~~~~~~~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~------------- 171 (290)
T 2xyq_A 107 --ADSTLIGDCATVHTANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKI------------- 171 (290)
T ss_dssp --SSEEEESCGGGCCCSSCEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEE-------------
T ss_pred --CEEEEECccccCCccCcccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEE-------------
Confidence 289 99999875 578999999754221 11 1124578999999888887766521
Q ss_pred cCCCCCCccccccCCHHHHHHHHHHCCCEEEEE
Q 020710 272 LFPGPSKATRAYLHAEADVERALQKVGWKIRKR 304 (322)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~l~~aGf~vv~~ 304 (322)
+.. ...+++.+++++.||..++.
T Consensus 172 -~~~---------~~~~~l~~~l~~~GF~~v~~ 194 (290)
T 2xyq_A 172 -TEH---------SWNADLYKLMGHFSWWTAFV 194 (290)
T ss_dssp -CSS---------SCCHHHHHHHTTEEEEEEEE
T ss_pred -ecc---------CCHHHHHHHHHHcCCcEEEE
Confidence 000 01247888888888876654
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=98.79 E-value=1.7e-08 Score=78.88 Aligned_cols=94 Identities=16% Similarity=0.154 Sum_probs=69.7
Q ss_pred HHHHHHHHhhhcCCCCCCeEEEECCCcc-cchHHHHh-cCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEE
Q 020710 133 TVENTMQMLNDEGSLKGIAVCDAGCGTG-SLAIPLAK-QGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEV 210 (322)
Q Consensus 133 ~~~~~~~~l~~~~~~~~~~VLDvGcG~G-~~~~~la~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~ 210 (322)
+.+.+.++|... ..++.+|||||||.| ..+..|++ .|+.|+++|+++..+ .|++
T Consensus 21 m~e~LaeYI~~~-~~~~~rVlEVG~G~g~~vA~~La~~~g~~V~atDInp~Av-----------------------~~v~ 76 (153)
T 2k4m_A 21 MWNDLAVYIIRC-SGPGTRVVEVGAGRFLYVSDYIRKHSKVDLVLTDIKPSHG-----------------------GIVR 76 (153)
T ss_dssp HHHHHHHHHHHH-SCSSSEEEEETCTTCCHHHHHHHHHSCCEEEEECSSCSST-----------------------TEEC
T ss_pred HHHHHHHHHHhc-CCCCCcEEEEccCCChHHHHHHHHhCCCeEEEEECCcccc-----------------------ceEE
Confidence 346777777654 134579999999999 59999998 799999999998643 4777
Q ss_pred cccccCC----CCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEE
Q 020710 211 KDLESLD----GKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILS 255 (322)
Q Consensus 211 ~d~~~~~----~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~ 255 (322)
.|+.+.. ..||+|++.. |++++...+.++++-.+-.++|.
T Consensus 77 dDiF~P~~~~Y~~~DLIYsir-----PP~El~~~i~~lA~~v~adliI~ 120 (153)
T 2k4m_A 77 DDITSPRMEIYRGAALIYSIR-----PPAEIHSSLMRVADAVGARLIIK 120 (153)
T ss_dssp CCSSSCCHHHHTTEEEEEEES-----CCTTTHHHHHHHHHHHTCEEEEE
T ss_pred ccCCCCcccccCCcCEEEEcC-----CCHHHHHHHHHHHHHcCCCEEEE
Confidence 8887762 4899998632 44556677777776666666664
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=1.9e-08 Score=92.55 Aligned_cols=95 Identities=18% Similarity=0.062 Sum_probs=72.2
Q ss_pred CCCeEEEECCCcccchHHHHhc-C-CEEEEEeCCHHHHHHHHHHhHHh---------------hhccCCCCCCCCCceEE
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQ-G-AIVSASDISAAMVAEARKKAEEE---------------LLADNGGEAPVMPKFEV 210 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~-~-~~v~gvD~s~~~l~~a~~~~~~~---------------~~~~~~~~~~~~~~~~~ 210 (322)
++.+|||+|||+|..+..+++. + .+|+++|+++.+++.+++++... ++.+ +++.+
T Consensus 47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~--------i~v~~ 118 (378)
T 2dul_A 47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKT--------IVINH 118 (378)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSE--------EEEEE
T ss_pred CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCc--------eEEEc
Confidence 3789999999999999999987 3 58999999999999999999877 5432 38899
Q ss_pred cccccC----CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEE
Q 020710 211 KDLESL----DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSF 256 (322)
Q Consensus 211 ~d~~~~----~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~ 256 (322)
+|+... .+.||+|++.- .. . ...+++...+.+++++++.+
T Consensus 119 ~Da~~~~~~~~~~fD~I~lDP-~~---~--~~~~l~~a~~~lk~gG~l~v 162 (378)
T 2dul_A 119 DDANRLMAERHRYFHFIDLDP-FG---S--PMEFLDTALRSAKRRGILGV 162 (378)
T ss_dssp SCHHHHHHHSTTCEEEEEECC-SS---C--CHHHHHHHHHHEEEEEEEEE
T ss_pred CcHHHHHHhccCCCCEEEeCC-CC---C--HHHHHHHHHHhcCCCCEEEE
Confidence 998664 46899999532 11 1 13677777666655555543
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=98.73 E-value=3.3e-08 Score=88.51 Aligned_cols=71 Identities=17% Similarity=0.122 Sum_probs=60.6
Q ss_pred CCCCeEEEECCCcccchHHHHhc---CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccCC------
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQ---GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESLD------ 217 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------ 217 (322)
.++.+|||+|||+|..+..+++. ..+|+++|+++.+++.+++++...++.+ +.++++|+.++.
T Consensus 101 ~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~--------v~~~~~D~~~~~~~~~~~ 172 (309)
T 2b9e_A 101 PPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSC--------CELAEEDFLAVSPSDPRY 172 (309)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCS--------EEEEECCGGGSCTTCGGG
T ss_pred CCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCe--------EEEEeCChHhcCcccccc
Confidence 36789999999999999999985 3689999999999999999998877643 388999987651
Q ss_pred CCccEEEE
Q 020710 218 GKYDTVVC 225 (322)
Q Consensus 218 ~~fD~V~~ 225 (322)
++||.|++
T Consensus 173 ~~fD~Vl~ 180 (309)
T 2b9e_A 173 HEVHYILL 180 (309)
T ss_dssp TTEEEEEE
T ss_pred CCCCEEEE
Confidence 47999997
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=98.71 E-value=1.8e-08 Score=87.60 Aligned_cols=69 Identities=13% Similarity=0.203 Sum_probs=53.8
Q ss_pred HHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCCE--EEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEE
Q 020710 133 TVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAI--VSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEV 210 (322)
Q Consensus 133 ~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~--v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~ 210 (322)
.++++++.+.. .++.+|||||||+|.++. +. .+.+ |+++|+|+.|++.+++++.... + +++++
T Consensus 9 i~~~iv~~~~~---~~~~~VLEIG~G~G~lt~-l~-~~~~~~v~avEid~~~~~~a~~~~~~~~---~-------v~~i~ 73 (252)
T 1qyr_A 9 VIDSIVSAINP---QKGQAMVEIGPGLAALTE-PV-GERLDQLTVIELDRDLAARLQTHPFLGP---K-------LTIYQ 73 (252)
T ss_dssp HHHHHHHHHCC---CTTCCEEEECCTTTTTHH-HH-HTTCSCEEEECCCHHHHHHHHTCTTTGG---G-------EEEEC
T ss_pred HHHHHHHhcCC---CCcCEEEEECCCCcHHHH-hh-hCCCCeEEEEECCHHHHHHHHHHhccCC---c-------eEEEE
Confidence 44666666653 357899999999999999 65 4677 9999999999999998775421 1 28999
Q ss_pred cccccC
Q 020710 211 KDLESL 216 (322)
Q Consensus 211 ~d~~~~ 216 (322)
+|+.+.
T Consensus 74 ~D~~~~ 79 (252)
T 1qyr_A 74 QDAMTF 79 (252)
T ss_dssp SCGGGC
T ss_pred CchhhC
Confidence 998875
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.69 E-value=2.1e-09 Score=93.15 Aligned_cols=80 Identities=19% Similarity=0.270 Sum_probs=61.6
Q ss_pred HHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcc
Q 020710 133 TVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKD 212 (322)
Q Consensus 133 ~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d 212 (322)
..+.+++.+.. .++.+|||||||+|.++..+++.+.+|+|+|+|+.|++.++++... .. +++++++|
T Consensus 17 ~~~~i~~~~~~---~~~~~VLDiG~G~G~~~~~l~~~~~~v~~id~~~~~~~~a~~~~~~---~~-------~v~~~~~D 83 (245)
T 1yub_A 17 VLNQIIKQLNL---KETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFNLSSEKLKL---NT-------RVTLIHQD 83 (245)
T ss_dssp THHHHHHHCCC---CSSEEEEECSCCCSSCSHHHHHHSSEEEESSSSCSSSSSSSCTTTT---CS-------EEEECCSC
T ss_pred HHHHHHHhcCC---CCCCEEEEEeCCCCHHHHHHHHhCCeEEEEECCHHHHHHHHHHhcc---CC-------ceEEEECC
Confidence 34666666653 3577999999999999999999999999999999999988876641 11 13888999
Q ss_pred cccCC----CCccEEEEc
Q 020710 213 LESLD----GKYDTVVCL 226 (322)
Q Consensus 213 ~~~~~----~~fD~V~~~ 226 (322)
+.+.+ ++| .|+++
T Consensus 84 ~~~~~~~~~~~f-~vv~n 100 (245)
T 1yub_A 84 ILQFQFPNKQRY-KIVGN 100 (245)
T ss_dssp CTTTTCCCSSEE-EEEEE
T ss_pred hhhcCcccCCCc-EEEEe
Confidence 88762 568 66665
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=3.1e-08 Score=91.37 Aligned_cols=96 Identities=17% Similarity=0.130 Sum_probs=73.5
Q ss_pred CCCeEEEECCCcccchHHHHhc--C-CEEEEEeCCHHHHHHHHHHhHHhhhccC-CCCCCCCCceEEcccccC-----CC
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQ--G-AIVSASDISAAMVAEARKKAEEELLADN-GGEAPVMPKFEVKDLESL-----DG 218 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~--~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~-~~~~~~~~~~~~~d~~~~-----~~ 218 (322)
++.+|||++||+|.++..++.+ | .+|+++|+++.+++.+++++..+++.++ + +++.+|+.+. .+
T Consensus 52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v-------~v~~~Da~~~l~~~~~~ 124 (392)
T 3axs_A 52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRY-------EIHGMEANFFLRKEWGF 124 (392)
T ss_dssp SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGE-------EEECSCHHHHHHSCCSS
T ss_pred CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceE-------EEEeCCHHHHHHHhhCC
Confidence 4679999999999999999985 5 4799999999999999999998887653 4 8899997443 45
Q ss_pred CccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEE
Q 020710 219 KYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSF 256 (322)
Q Consensus 219 ~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~ 256 (322)
+||+|++.- . .. ...+++.+.+++++++++.+
T Consensus 125 ~fD~V~lDP-~---g~--~~~~l~~a~~~Lk~gGll~~ 156 (392)
T 3axs_A 125 GFDYVDLDP-F---GT--PVPFIESVALSMKRGGILSL 156 (392)
T ss_dssp CEEEEEECC-S---SC--CHHHHHHHHHHEEEEEEEEE
T ss_pred CCcEEEECC-C---cC--HHHHHHHHHHHhCCCCEEEE
Confidence 799999865 1 11 12577777676655555544
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=9.8e-08 Score=94.70 Aligned_cols=117 Identities=22% Similarity=0.227 Sum_probs=80.0
Q ss_pred HHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcC------------------------------------------
Q 020710 133 TVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQG------------------------------------------ 170 (322)
Q Consensus 133 ~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~------------------------------------------ 170 (322)
+...++.+.. ..++..|||.+||+|.+++.++..+
T Consensus 178 LAa~ll~~~~---~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~ 254 (703)
T 3v97_A 178 LAAAIVMRSG---WQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAE 254 (703)
T ss_dssp HHHHHHHHTT---CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhC---CCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhcccc
Confidence 3344444433 2357799999999999998877542
Q ss_pred --CEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--C---CCccEEEEcccccc-cC-cchHHHHH
Q 020710 171 --AIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL--D---GKYDTVVCLDVLIH-YP-QSKADGMI 241 (322)
Q Consensus 171 --~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~---~~fD~V~~~~~l~~-~~-~~~~~~~l 241 (322)
.+++|+|+++.|++.|++++...++.+.+ .|.++|+.++ + ++||+|+++--+.. +. .+.+..++
T Consensus 255 ~~~~i~G~Did~~av~~A~~N~~~agv~~~i-------~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly 327 (703)
T 3v97_A 255 YSSHFYGSDSDARVIQRARTNARLAGIGELI-------TFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALH 327 (703)
T ss_dssp CCCCEEEEESCHHHHHHHHHHHHHTTCGGGE-------EEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHH
T ss_pred CCccEEEEECCHHHHHHHHHHHHHcCCCCce-------EEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHH
Confidence 47999999999999999999998887544 8999998776 2 28999999854321 22 22344555
Q ss_pred HHHHh----ccCCeEEEEECCC
Q 020710 242 AHLAS----LAEKRLILSFAPK 259 (322)
Q Consensus 242 ~~l~~----~~~~~~il~~~~~ 259 (322)
+.+.+ +.+++-+.++.++
T Consensus 328 ~~l~~~lk~~~~g~~~~ilt~~ 349 (703)
T 3v97_A 328 SLLGRIMKNQFGGWNLSLFSAS 349 (703)
T ss_dssp HHHHHHHHHHCTTCEEEEEESC
T ss_pred HHHHHHHHhhCCCCeEEEEeCC
Confidence 44433 3445555555443
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=98.56 E-value=9.5e-07 Score=73.73 Aligned_cols=94 Identities=14% Similarity=0.103 Sum_probs=70.4
Q ss_pred CCeEEEECCCcccchHHHHhc-CCEEEEEeCCHHHHHHHHHHhHHhhh--ccCCCCCCCCCceEEccccc----------
Q 020710 149 GIAVCDAGCGTGSLAIPLAKQ-GAIVSASDISAAMVAEARKKAEEELL--ADNGGEAPVMPKFEVKDLES---------- 215 (322)
Q Consensus 149 ~~~VLDvGcG~G~~~~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~~~--~~~~~~~~~~~~~~~~d~~~---------- 215 (322)
..+|||+|| |+.+..+++. +.+|+.||.++++.+.+++++...+. .+++ +++.+|+.+
T Consensus 31 a~~VLEiGt--GySTl~lA~~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I-------~~~~gda~~~~~wg~p~~~ 101 (202)
T 3cvo_A 31 AEVILEYGS--GGSTVVAAELPGKHVTSVESDRAWARMMKAWLAANPPAEGTEV-------NIVWTDIGPTGDWGHPVSD 101 (202)
T ss_dssp CSEEEEESC--SHHHHHHHTSTTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEE-------EEEECCCSSBCGGGCBSSS
T ss_pred CCEEEEECc--hHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCce-------EEEEeCchhhhcccccccc
Confidence 679999998 4788888887 78999999999999999999998876 4433 888888532
Q ss_pred ---------------CC--CCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEECC
Q 020710 216 ---------------LD--GKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAP 258 (322)
Q Consensus 216 ---------------~~--~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~ 258 (322)
.+ ++||+|++-.-. ....+..+.+++++|++|.+..
T Consensus 102 ~~~~~l~~~~~~i~~~~~~~~fDlIfIDg~k-------~~~~~~~~l~~l~~GG~Iv~DN 154 (202)
T 3cvo_A 102 AKWRSYPDYPLAVWRTEGFRHPDVVLVDGRF-------RVGCALATAFSITRPVTLLFDD 154 (202)
T ss_dssp TTGGGTTHHHHGGGGCTTCCCCSEEEECSSS-------HHHHHHHHHHHCSSCEEEEETT
T ss_pred hhhhhHHHHhhhhhccccCCCCCEEEEeCCC-------chhHHHHHHHhcCCCeEEEEeC
Confidence 12 789999976521 2244555556677777776643
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.53 E-value=5e-07 Score=82.64 Aligned_cols=162 Identities=10% Similarity=0.055 Sum_probs=91.2
Q ss_pred CCeEEEECCCcccchHHHHhc-----------------CCEEEEEeCCHHHHHHHHHHhHHhhhcc---C-CCCCCCCCc
Q 020710 149 GIAVCDAGCGTGSLAIPLAKQ-----------------GAIVSASDISAAMVAEARKKAEEELLAD---N-GGEAPVMPK 207 (322)
Q Consensus 149 ~~~VLDvGcG~G~~~~~la~~-----------------~~~v~gvD~s~~~l~~a~~~~~~~~~~~---~-~~~~~~~~~ 207 (322)
..+|+|+|||+|.++..+... ..+|...|+-.......=+.+....... . .+-.....-
T Consensus 53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~ 132 (374)
T 3b5i_A 53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY 132 (374)
T ss_dssp CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence 578999999999999887321 2568888887766554433332210000 0 000000013
Q ss_pred eEEcccccC------CCCccEEEEcccccccCc-c-----------------------------------hHHHHHHHHH
Q 020710 208 FEVKDLESL------DGKYDTVVCLDVLIHYPQ-S-----------------------------------KADGMIAHLA 245 (322)
Q Consensus 208 ~~~~d~~~~------~~~fD~V~~~~~l~~~~~-~-----------------------------------~~~~~l~~l~ 245 (322)
|..+..... +++||+|+++.+|||+.+ + .+..+|+..+
T Consensus 133 f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ra 212 (374)
T 3b5i_A 133 FVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARA 212 (374)
T ss_dssp EEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444443332 789999999999999873 1 1334577777
Q ss_pred hccCCeEEEEE--C-CChh----------hH-HHHHHh-hccCCC-C-------CCccccccCCHHHHHHHHH-HCCCEE
Q 020710 246 SLAEKRLILSF--A-PKTF----------YY-DLLKRV-GELFPG-P-------SKATRAYLHAEADVERALQ-KVGWKI 301 (322)
Q Consensus 246 ~~~~~~~il~~--~-~~~~----------~~-~~~~~~-~~~~~~-~-------~~~~~~~~~~~~~~~~~l~-~aGf~v 301 (322)
+.+.+||.+.+ . ..+. .+ +.+... .++... . ......|+.+.+|++.+++ +.||++
T Consensus 213 ~eL~pGG~mvl~~~gr~~~~~~~~~~~~~~~~~~l~~al~~l~~eG~i~~e~~d~f~~P~y~ps~~E~~~~l~~~~~F~I 292 (374)
T 3b5i_A 213 AEVKRGGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVREGLVAAEKRDGFNIPVYAPSLQDFKEVVDANGSFAI 292 (374)
T ss_dssp HHEEEEEEEEEEEEECCCSSTTCCHHHHHHHSSHHHHHHHHTTSSSSSCHHHHSSCCCCBCCCCHHHHHHHHHHHCSEEE
T ss_pred HHhCCCCEEEEEEecCCCCccccccchhhHHHHHHHHHHHHHHHhCCcchhhcccCCccccCCCHHHHHHHHHhcCCcEE
Confidence 76666654433 1 1110 00 112111 111111 0 0122446679999999998 599999
Q ss_pred EEEeeeecc
Q 020710 302 RKRGLITTQ 310 (322)
Q Consensus 302 v~~~~~~~~ 310 (322)
...+.....
T Consensus 293 ~~le~~~~~ 301 (374)
T 3b5i_A 293 DKLVVYKGG 301 (374)
T ss_dssp EEEEEEECC
T ss_pred EEEEEEeec
Confidence 887776544
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=98.48 E-value=5.6e-07 Score=86.65 Aligned_cols=116 Identities=10% Similarity=-0.024 Sum_probs=78.7
Q ss_pred HHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc----C----------------CEEEEEeCCHHHHHHHHHHhHH
Q 020710 133 TVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ----G----------------AIVSASDISAAMVAEARKKAEE 192 (322)
Q Consensus 133 ~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~----~----------------~~v~gvD~s~~~l~~a~~~~~~ 192 (322)
.+..+++++.. .++.+|||.+||+|.++..+++. + .+++|+|+++.+++.|+.++.-
T Consensus 157 iv~~mv~~l~p---~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l 233 (541)
T 2ar0_A 157 LIKTIIHLLKP---QPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLL 233 (541)
T ss_dssp HHHHHHHHHCC---CTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcc---CCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHH
Confidence 44455565543 35779999999999999887653 1 3799999999999999988776
Q ss_pred hhhccCCCCCCCCCceEEcccccC----CCCccEEEEcccccccCc------------chHHHHHHHHHhccCCeEEE
Q 020710 193 ELLADNGGEAPVMPKFEVKDLESL----DGKYDTVVCLDVLIHYPQ------------SKADGMIAHLASLAEKRLIL 254 (322)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~d~~~~----~~~fD~V~~~~~l~~~~~------------~~~~~~l~~l~~~~~~~~il 254 (322)
.+..... ...+.+.++|.... .++||+|+++-.+..... ..-..++.++.+.++++|.+
T Consensus 234 ~gi~~~~---~~~~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~ 308 (541)
T 2ar0_A 234 HDIEGNL---DHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRA 308 (541)
T ss_dssp TTCCCBG---GGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEE
T ss_pred hCCCccc---cccCCeEeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEE
Confidence 5543100 00027888987543 468999999876544321 11236788887776655543
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=3.8e-07 Score=88.57 Aligned_cols=99 Identities=11% Similarity=0.013 Sum_probs=71.2
Q ss_pred CCCeEEEECCCcccchHHHHh---c-CC--EEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--CCC
Q 020710 148 KGIAVCDAGCGTGSLAIPLAK---Q-GA--IVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL--DGK 219 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~---~-~~--~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~ 219 (322)
+...|||||||+|-+....++ . +. +|++||-|+ |...+++....+++.+++ +++.+|+++. +.+
T Consensus 357 ~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp-~A~~a~~~v~~N~~~dkV-------tVI~gd~eev~LPEK 428 (637)
T 4gqb_A 357 NVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP-NAVVTLENWQFEEWGSQV-------TVVSSDMREWVAPEK 428 (637)
T ss_dssp CEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH-HHHHHHHHHHHHTTGGGE-------EEEESCTTTCCCSSC
T ss_pred CCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH-HHHHHHHHHHhccCCCeE-------EEEeCcceeccCCcc
Confidence 345799999999998544433 3 33 689999998 667788888888888876 9999999986 789
Q ss_pred ccEEEEcccccccCcchHHHHHHHHHhccCCeEEE
Q 020710 220 YDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLIL 254 (322)
Q Consensus 220 fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il 254 (322)
.|+|++-..=..+-.+....++....+.++++|++
T Consensus 429 VDIIVSEwMG~fLl~E~mlevL~Ardr~LKPgGim 463 (637)
T 4gqb_A 429 ADIIVSELLGSFADNELSPECLDGAQHFLKDDGVS 463 (637)
T ss_dssp EEEEECCCCBTTBGGGCHHHHHHHHGGGEEEEEEE
T ss_pred cCEEEEEcCcccccccCCHHHHHHHHHhcCCCcEE
Confidence 99999843322222233445665556677777765
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=98.44 E-value=3.3e-07 Score=79.88 Aligned_cols=83 Identities=17% Similarity=0.117 Sum_probs=67.9
Q ss_pred hhHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEE
Q 020710 131 SKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEV 210 (322)
Q Consensus 131 ~~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~ 210 (322)
..+++.+++.+... +++.++|.+||.|..+..+++.+.+|+|+|.++.+++.+++ +.. .++ .++.
T Consensus 8 pVLl~e~le~L~~~---~gg~~VD~T~G~GGHS~~il~~~g~VigiD~Dp~Ai~~A~~-L~~----~rv-------~lv~ 72 (285)
T 1wg8_A 8 PVLYQEALDLLAVR---PGGVYVDATLGGAGHARGILERGGRVIGLDQDPEAVARAKG-LHL----PGL-------TVVQ 72 (285)
T ss_dssp CTTHHHHHHHHTCC---TTCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHH-TCC----TTE-------EEEE
T ss_pred hHHHHHHHHhhCCC---CCCEEEEeCCCCcHHHHHHHHCCCEEEEEeCCHHHHHHHHh-hcc----CCE-------EEEE
Confidence 34668888888754 67899999999999999999988899999999999999988 643 233 8899
Q ss_pred cccccC--------CCCccEEEEccc
Q 020710 211 KDLESL--------DGKYDTVVCLDV 228 (322)
Q Consensus 211 ~d~~~~--------~~~fD~V~~~~~ 228 (322)
+|+.++ .+++|.|++.-.
T Consensus 73 ~~f~~l~~~L~~~g~~~vDgIL~DLG 98 (285)
T 1wg8_A 73 GNFRHLKRHLAALGVERVDGILADLG 98 (285)
T ss_dssp SCGGGHHHHHHHTTCSCEEEEEEECS
T ss_pred CCcchHHHHHHHcCCCCcCEEEeCCc
Confidence 998776 257999997443
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.42 E-value=2e-06 Score=75.85 Aligned_cols=103 Identities=14% Similarity=0.107 Sum_probs=77.0
Q ss_pred CCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhh---hccCCCCCCCCCceEEcccccC----CC
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEEL---LADNGGEAPVMPKFEVKDLESL----DG 218 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~---~~~~~~~~~~~~~~~~~d~~~~----~~ 218 (322)
.+.+||-||.|.|..++.+++. ..+|+.|||++.+++.+++.+.... ..+ .+++.+.+|.... .+
T Consensus 83 ~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~d------pRv~v~~~Dg~~~l~~~~~ 156 (294)
T 3o4f_A 83 HAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDD------PRFKLVIDDGVNFVNQTSQ 156 (294)
T ss_dssp CCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGC------TTEEEEESCTTTTTSCSSC
T ss_pred CCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCC------CcEEEEechHHHHHhhccc
Confidence 5789999999999999999987 4589999999999999999886431 121 2238899997665 68
Q ss_pred CccEEEEcccccccCcch--HHHHHHHHHhccCCeEEEEE
Q 020710 219 KYDTVVCLDVLIHYPQSK--ADGMIAHLASLAEKRLILSF 256 (322)
Q Consensus 219 ~fD~V~~~~~l~~~~~~~--~~~~l~~l~~~~~~~~il~~ 256 (322)
+||+|+.-..=..-+... -.++++.+++.++++|++..
T Consensus 157 ~yDvIi~D~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~ 196 (294)
T 3o4f_A 157 TFDVIISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVA 196 (294)
T ss_dssp CEEEEEESCCCCCCTTCCSSCCHHHHHHHHTEEEEEEEEE
T ss_pred cCCEEEEeCCCcCCCchhhcCHHHHHHHHHHhCCCCEEEE
Confidence 899999743211111111 14889999999888887765
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=3e-06 Score=77.59 Aligned_cols=76 Identities=13% Similarity=0.091 Sum_probs=51.3
Q ss_pred CCeEEEECCCcccchHHHHhc-------------------CCEEEEEeCC-----------HHHHHHHHHHhHHhhhccC
Q 020710 149 GIAVCDAGCGTGSLAIPLAKQ-------------------GAIVSASDIS-----------AAMVAEARKKAEEELLADN 198 (322)
Q Consensus 149 ~~~VLDvGcG~G~~~~~la~~-------------------~~~v~gvD~s-----------~~~l~~a~~~~~~~~~~~~ 198 (322)
..+|+|+||++|.++..+... ..+|+..|+- +.+.+..++. .+....
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~---~g~~~~ 129 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKE---NGRKIG 129 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHH---TCCCTT
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhh---ccCCCC
Confidence 578999999999999887643 2468888987 4444333221 111000
Q ss_pred CCCCCCCCceEEcccccC------CCCccEEEEcccccccCc
Q 020710 199 GGEAPVMPKFEVKDLESL------DGKYDTVVCLDVLIHYPQ 234 (322)
Q Consensus 199 ~~~~~~~~~~~~~d~~~~------~~~fD~V~~~~~l~~~~~ 234 (322)
.-|+.+..... ++++|+|+++.+|||+.+
T Consensus 130 -------~~f~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~ 164 (384)
T 2efj_A 130 -------SCLIGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQ 164 (384)
T ss_dssp -------SEEEEECCSCTTSCCSCTTCEEEEEEESCTTBCSS
T ss_pred -------ceEEEecchhhhhccCCCCceEEEEecceeeecCC
Confidence 15666665443 799999999999999864
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.38 E-value=3.4e-07 Score=79.66 Aligned_cols=126 Identities=23% Similarity=0.222 Sum_probs=79.9
Q ss_pred CCCeEEEECCCcccchHHHHhc----------C----CEEEEEeCCH---HHHH-----------HHHHHhHHh------
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQ----------G----AIVSASDISA---AMVA-----------EARKKAEEE------ 193 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~----------~----~~v~gvD~s~---~~l~-----------~a~~~~~~~------ 193 (322)
+..+|||||||+|.++..+++. + .+++++|..| ++++ .+++.....
T Consensus 60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g 139 (257)
T 2qy6_A 60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG 139 (257)
T ss_dssp SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence 4579999999999998876542 1 4799999776 5555 344443321
Q ss_pred ----hhccCCCCCCCCCceEEcccccC----CC----CccEEEEcc-cccccCcchHHHHHHHHHhccCCeEEEEECCCh
Q 020710 194 ----LLADNGGEAPVMPKFEVKDLESL----DG----KYDTVVCLD-VLIHYPQSKADGMIAHLASLAEKRLILSFAPKT 260 (322)
Q Consensus 194 ----~~~~~~~~~~~~~~~~~~d~~~~----~~----~fD~V~~~~-~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~ 260 (322)
.... ...++++..+|+.+. ++ .||+|+.-. .-...|+--...+++.+++++++|+++..-..
T Consensus 140 ~~r~~~~~----~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~tysa- 214 (257)
T 2qy6_A 140 CHRLLLDE----GRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLATFTS- 214 (257)
T ss_dssp EEEEEEC------CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEEEEESCC-
T ss_pred hhheeccC----CceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcEEEEEeC-
Confidence 0110 012347888997552 23 799999843 12212221125899999999888887764110
Q ss_pred hhHHHHHHhhccCCCCCCccccccCCHHHHHHHHHHCCCEEEEE
Q 020710 261 FYYDLLKRVGELFPGPSKATRAYLHAEADVERALQKVGWKIRKR 304 (322)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~vv~~ 304 (322)
...+.+.|.++||++.+.
T Consensus 215 --------------------------a~~vrr~L~~aGF~v~~~ 232 (257)
T 2qy6_A 215 --------------------------AGFVRRGLQEAGFTMQKR 232 (257)
T ss_dssp --------------------------BHHHHHHHHHHTEEEEEE
T ss_pred --------------------------CHHHHHHHHHCCCEEEeC
Confidence 136788899999998764
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=98.31 E-value=3.4e-06 Score=76.62 Aligned_cols=80 Identities=16% Similarity=0.114 Sum_probs=57.1
Q ss_pred CCCeEEEECCCcccchHHHHhc------------------CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceE
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQ------------------GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFE 209 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~------------------~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~ 209 (322)
+..+|+|+||++|.++..+... ..+|+..|+..+.....-+.+....... ..-|.
T Consensus 51 ~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~-------~~~f~ 123 (359)
T 1m6e_X 51 TRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVD-------GVCFI 123 (359)
T ss_dssp SEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCT-------TCEEE
T ss_pred CceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccC-------CCEEE
Confidence 4568999999999988766543 2468999999988887776654311000 11566
Q ss_pred EcccccC------CCCccEEEEcccccccCc
Q 020710 210 VKDLESL------DGKYDTVVCLDVLIHYPQ 234 (322)
Q Consensus 210 ~~d~~~~------~~~fD~V~~~~~l~~~~~ 234 (322)
.+..... ++++|+|+++.+|||+.+
T Consensus 124 ~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~ 154 (359)
T 1m6e_X 124 NGVPGSFYGRLFPRNTLHFIHSSYSLMWLSQ 154 (359)
T ss_dssp EEEESCSSSCCSCTTCBSCEEEESCTTBCSS
T ss_pred EecchhhhhccCCCCceEEEEehhhhhhccc
Confidence 6654442 789999999999999764
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=98.29 E-value=1.5e-06 Score=84.56 Aligned_cols=98 Identities=9% Similarity=0.057 Sum_probs=69.0
Q ss_pred CCeEEEECCCcccchHHH---Hh-cC-----------CEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEccc
Q 020710 149 GIAVCDAGCGTGSLAIPL---AK-QG-----------AIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDL 213 (322)
Q Consensus 149 ~~~VLDvGcG~G~~~~~l---a~-~~-----------~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~ 213 (322)
...|||||||+|.++... ++ .+ .+|++||.|+.++...+.+.. +++.+++ +++.+|+
T Consensus 410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~-Ng~~d~V-------tVI~gd~ 481 (745)
T 3ua3_A 410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV-RTWKRRV-------TIIESDM 481 (745)
T ss_dssp EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH-HTTTTCS-------EEEESCG
T ss_pred CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh-cCCCCeE-------EEEeCch
Confidence 457999999999996432 21 12 389999999987766665554 6666655 9999999
Q ss_pred ccC--------CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEE
Q 020710 214 ESL--------DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLIL 254 (322)
Q Consensus 214 ~~~--------~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il 254 (322)
++. .++.|+|++-..-.....+...++|....+.++++|++
T Consensus 482 eev~lp~~~~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lkp~Gi~ 530 (745)
T 3ua3_A 482 RSLPGIAKDRGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLKPTTIS 530 (745)
T ss_dssp GGHHHHHHHTTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSCTTCEE
T ss_pred hhcccccccCCCCcccEEEEeccccccchhccHHHHHHHHHhCCCCcEE
Confidence 875 47999999855432223333456777777777666654
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.26 E-value=2.7e-06 Score=81.84 Aligned_cols=89 Identities=17% Similarity=-0.005 Sum_probs=64.7
Q ss_pred hhHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc-----------------CCEEEEEeCCHHHHHHHHHHhHHh
Q 020710 131 SKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ-----------------GAIVSASDISAAMVAEARKKAEEE 193 (322)
Q Consensus 131 ~~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~-----------------~~~v~gvD~s~~~l~~a~~~~~~~ 193 (322)
...++.+++++... ..+|||.+||+|.++..+++. ..+++|+|+++.+++.|+.++.-.
T Consensus 231 ~~Vv~lmv~ll~p~----~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~ 306 (544)
T 3khk_A 231 KSIVTLIVEMLEPY----KGRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIR 306 (544)
T ss_dssp HHHHHHHHHHHCCC----SEEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcC----CCeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHh
Confidence 34455566666543 349999999999998876532 357999999999999999988777
Q ss_pred hhccCCCCCCCCCceEEcccccC----CCCccEEEEccccc
Q 020710 194 LLADNGGEAPVMPKFEVKDLESL----DGKYDTVVCLDVLI 230 (322)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~d~~~~----~~~fD~V~~~~~l~ 230 (322)
++...+ .+.++|.... +.+||+|+++--+.
T Consensus 307 gi~~~i-------~i~~gDtL~~~~~~~~~fD~Iv~NPPf~ 340 (544)
T 3khk_A 307 GIDFNF-------GKKNADSFLDDQHPDLRADFVMTNPPFN 340 (544)
T ss_dssp TCCCBC-------CSSSCCTTTSCSCTTCCEEEEEECCCSS
T ss_pred CCCccc-------ceeccchhcCcccccccccEEEECCCcC
Confidence 665422 4477775432 47899999976543
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.19 E-value=1.7e-05 Score=76.16 Aligned_cols=91 Identities=14% Similarity=0.079 Sum_probs=66.7
Q ss_pred hHHHHHHHHhhhcC-CCCCCeEEEECCCcccchHHHHhc-----CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCC
Q 020710 132 KTVENTMQMLNDEG-SLKGIAVCDAGCGTGSLAIPLAKQ-----GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVM 205 (322)
Q Consensus 132 ~~~~~~~~~l~~~~-~~~~~~VLDvGcG~G~~~~~la~~-----~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~ 205 (322)
..++.+++++.... +.++.+|||.+||+|.++..+++. ..+++|+|+++.+++.|+.++.-.+... ..
T Consensus 204 ~Vv~lmv~ll~~~~~~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~------~~ 277 (542)
T 3lkd_A 204 PVAKLMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPI------EN 277 (542)
T ss_dssp HHHHHHHHHHHTTCTTCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCG------GG
T ss_pred HHHHHHHHHHhcccCCCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCc------Cc
Confidence 34556666666321 135779999999999999888765 4689999999999999999887666521 01
Q ss_pred CceEEcccccC------CCCccEEEEccc
Q 020710 206 PKFEVKDLESL------DGKYDTVVCLDV 228 (322)
Q Consensus 206 ~~~~~~d~~~~------~~~fD~V~~~~~ 228 (322)
+.+.++|.... ..+||+|+++--
T Consensus 278 ~~I~~gDtL~~d~p~~~~~~fD~IvaNPP 306 (542)
T 3lkd_A 278 QFLHNADTLDEDWPTQEPTNFDGVLMNPP 306 (542)
T ss_dssp EEEEESCTTTSCSCCSSCCCBSEEEECCC
T ss_pred cceEecceecccccccccccccEEEecCC
Confidence 26788886533 468999999743
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=98.19 E-value=1e-05 Score=71.10 Aligned_cols=146 Identities=11% Similarity=0.031 Sum_probs=96.1
Q ss_pred HHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc-------CCEEEEEeCCH--------------------------
Q 020710 134 VENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ-------GAIVSASDISA-------------------------- 180 (322)
Q Consensus 134 ~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~-------~~~v~gvD~s~-------------------------- 180 (322)
+..+++.+... ..+++|||+|+..|..+..+++. +.+|+++|..+
T Consensus 94 L~~l~~~v~~~--~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~ 171 (282)
T 2wk1_A 94 IRQCVEDVIGN--NVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLA 171 (282)
T ss_dssp HHHHHHHHHHT--TCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHC
T ss_pred HHHHHHHHHhc--CCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccch
Confidence 34555555433 35789999999999999887643 56799999642
Q ss_pred HHHHHHHHHhHHhhhc-cCCCCCCCCCceEEcccccC-----CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEE
Q 020710 181 AMVAEARKKAEEELLA-DNGGEAPVMPKFEVKDLESL-----DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLIL 254 (322)
Q Consensus 181 ~~l~~a~~~~~~~~~~-~~~~~~~~~~~~~~~d~~~~-----~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il 254 (322)
..++.+++++.+.+.. +++ +++.+|+.+. +++||+|+.-.-. ... ....++.+...+.+|++|
T Consensus 172 ~~~~~ar~n~~~~gl~~~~I-------~li~Gda~etL~~~~~~~~d~vfIDaD~--y~~--~~~~Le~~~p~L~pGGiI 240 (282)
T 2wk1_A 172 VSEEEVRRNFRNYDLLDEQV-------RFLPGWFKDTLPTAPIDTLAVLRMDGDL--YES--TWDTLTNLYPKVSVGGYV 240 (282)
T ss_dssp CCHHHHHHHHHHTTCCSTTE-------EEEESCHHHHSTTCCCCCEEEEEECCCS--HHH--HHHHHHHHGGGEEEEEEE
T ss_pred hHHHHHHHHHHHcCCCcCce-------EEEEeCHHHHHhhCCCCCEEEEEEcCCc--ccc--HHHHHHHHHhhcCCCEEE
Confidence 1467788888887763 444 9999997653 4689999875421 111 347788888888888888
Q ss_pred EECCChhhHHHHHHhhccCCCCCCccccccCCHHHHHHHHHHCCCEEEEEeeeecceeh
Q 020710 255 SFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQKVGWKIRKRGLITTQFYF 313 (322)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~vv~~~~~~~~~~f 313 (322)
.+..-.+ +++ ..+.+.+.+.+.|+++.-........||
T Consensus 241 v~DD~~~-----------~~G----------~~~Av~Ef~~~~~i~~~i~~~~~~~v~~ 278 (282)
T 2wk1_A 241 IVDDYMM-----------CPP----------CKDAVDEYRAKFDIADELITIDRDGVYW 278 (282)
T ss_dssp EESSCTT-----------CHH----------HHHHHHHHHHHTTCCSCCEECSSSCEEE
T ss_pred EEcCCCC-----------CHH----------HHHHHHHHHHhcCCceEEEEecCEEEEE
Confidence 8754321 110 1356777777888765544444444444
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=98.16 E-value=4.9e-06 Score=73.98 Aligned_cols=59 Identities=22% Similarity=0.244 Sum_probs=50.6
Q ss_pred hhHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHh
Q 020710 131 SKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEE 193 (322)
Q Consensus 131 ~~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~ 193 (322)
..+++.+++.... ++..|||++||+|..+..+++.|.+++|+|+++.+++.|++++...
T Consensus 222 ~~l~~~~i~~~~~----~~~~vlD~f~GsGt~~~~a~~~g~~~~g~e~~~~~~~~a~~r~~~~ 280 (297)
T 2zig_A 222 LELAERLVRMFSF----VGDVVLDPFAGTGTTLIAAARWGRRALGVELVPRYAQLAKERFARE 280 (297)
T ss_dssp HHHHHHHHHHHCC----TTCEEEETTCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC----CCCEEEECCCCCCHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHh
Confidence 4556666666542 5789999999999999999999999999999999999999998764
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=98.13 E-value=2.4e-06 Score=74.00 Aligned_cols=132 Identities=14% Similarity=-0.001 Sum_probs=73.5
Q ss_pred hhHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc-CC-EEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCce
Q 020710 131 SKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ-GA-IVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKF 208 (322)
Q Consensus 131 ~~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~-~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~ 208 (322)
.....+++++.......++.+|||+|||+|.++..+++. +. +++|+|++-.+...... ....+.. +..
T Consensus 57 SRaA~KL~ei~ek~~l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~-~~~~g~~---------ii~ 126 (277)
T 3evf_A 57 SRGTAKLRWFHERGYVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMN-VQSLGWN---------IIT 126 (277)
T ss_dssp STHHHHHHHHHHTTSSCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCC-CCBTTGG---------GEE
T ss_pred ccHHHHHHHHHHhCCCCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCcccccc-cCcCCCC---------eEE
Confidence 344567777777654567789999999999999998876 44 58899987443100000 0000111 133
Q ss_pred EEccc--ccC-CCCccEEEEcccccccCcchH-----HHHHHHHHhccCCe-E--EEEECC--ChhhHHHHHHhhccC
Q 020710 209 EVKDL--ESL-DGKYDTVVCLDVLIHYPQSKA-----DGMIAHLASLAEKR-L--ILSFAP--KTFYYDLLKRVGELF 273 (322)
Q Consensus 209 ~~~d~--~~~-~~~fD~V~~~~~l~~~~~~~~-----~~~l~~l~~~~~~~-~--il~~~~--~~~~~~~~~~~~~~~ 273 (322)
...++ ..+ ++.||+|+|..+.+ ...... ..+++.+.+++++| + ++-+.. ..-...++..+...|
T Consensus 127 ~~~~~dv~~l~~~~~DlVlsD~apn-sG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf~pyg~~~~~l~~~lk~~F 203 (277)
T 3evf_A 127 FKDKTDIHRLEPVKCDTLLCDIGES-SSSSVTEGERTVRVLDTVEKWLACGVDNFCVKVLAPYMPDVLEKLELLQRRF 203 (277)
T ss_dssp EECSCCTTTSCCCCCSEEEECCCCC-CSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESCTTSHHHHHHHHHHHHHH
T ss_pred EeccceehhcCCCCccEEEecCccC-cCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCCccHHHHHHHHHHhc
Confidence 34433 333 67899999987654 222111 12355556666544 4 333333 444444555544443
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=98.05 E-value=8.4e-06 Score=73.85 Aligned_cols=69 Identities=19% Similarity=0.158 Sum_probs=52.6
Q ss_pred CCCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC---CCCccE
Q 020710 146 SLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL---DGKYDT 222 (322)
Q Consensus 146 ~~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~fD~ 222 (322)
..++.+|||+||+.|.++..++++|.+|++||+.+ |-. .+... .++.++++|+... .+.||+
T Consensus 209 l~~G~~vlDLGAaPGGWT~~l~~rg~~V~aVD~~~-l~~----~l~~~----------~~V~~~~~d~~~~~~~~~~~D~ 273 (375)
T 4auk_A 209 LANGMWAVDLGACPGGWTYQLVKRNMWVYSVDNGP-MAQ----SLMDT----------GQVTWLREDGFKFRPTRSNISW 273 (375)
T ss_dssp SCTTCEEEEETCTTCHHHHHHHHTTCEEEEECSSC-CCH----HHHTT----------TCEEEECSCTTTCCCCSSCEEE
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHCCCEEEEEEhhh-cCh----hhccC----------CCeEEEeCccccccCCCCCcCE
Confidence 35789999999999999999999999999999864 211 11111 1238889998765 468999
Q ss_pred EEEcccc
Q 020710 223 VVCLDVL 229 (322)
Q Consensus 223 V~~~~~l 229 (322)
|+|-++.
T Consensus 274 vvsDm~~ 280 (375)
T 4auk_A 274 MVCDMVE 280 (375)
T ss_dssp EEECCSS
T ss_pred EEEcCCC
Confidence 9997765
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=97.97 E-value=1.7e-06 Score=74.97 Aligned_cols=91 Identities=19% Similarity=0.057 Sum_probs=57.2
Q ss_pred hhHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc-CC-EEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCce
Q 020710 131 SKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ-GA-IVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKF 208 (322)
Q Consensus 131 ~~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~-~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~ 208 (322)
....-+++++..+....++.+|||+|||.|.++.++++. +. .|+|+|++..+...+... ...+... +.+
T Consensus 73 SRAAfKL~ei~eK~~Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~-~~~g~~i--------i~~ 143 (282)
T 3gcz_A 73 SRGSAKLRWMEERGYVKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMR-TTLGWNL--------IRF 143 (282)
T ss_dssp STHHHHHHHHHHTTSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCC-CBTTGGG--------EEE
T ss_pred cHHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCcccccccc-ccCCCce--------EEe
Confidence 344567777777665567789999999999999998865 44 589999986532211100 0001110 022
Q ss_pred EEc-ccccC-CCCccEEEEccccc
Q 020710 209 EVK-DLESL-DGKYDTVVCLDVLI 230 (322)
Q Consensus 209 ~~~-d~~~~-~~~fD~V~~~~~l~ 230 (322)
... |+..+ .+++|+|+|-.+..
T Consensus 144 ~~~~dv~~l~~~~~DvVLSDmApn 167 (282)
T 3gcz_A 144 KDKTDVFNMEVIPGDTLLCDIGES 167 (282)
T ss_dssp ECSCCGGGSCCCCCSEEEECCCCC
T ss_pred eCCcchhhcCCCCcCEEEecCccC
Confidence 222 44444 68899999987765
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=97.95 E-value=4.4e-05 Score=75.49 Aligned_cols=78 Identities=18% Similarity=0.136 Sum_probs=54.0
Q ss_pred CCCeEEEECCCcccchHHHHhcC-----CEEEEEeCCHHHHHHHHH--HhHHhhhccCCCCCCCCCceEEcccccC----
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQG-----AIVSASDISAAMVAEARK--KAEEELLADNGGEAPVMPKFEVKDLESL---- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~~-----~~v~gvD~s~~~l~~a~~--~~~~~~~~~~~~~~~~~~~~~~~d~~~~---- 216 (322)
++.+|||.|||+|.++..+++.. .+++|+|+++.+++.|+. .+........ .....+...|+...
T Consensus 321 ~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhG----i~~~~I~~dD~L~~~~~~ 396 (878)
T 3s1s_A 321 EDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSS----NNAPTITGEDVCSLNPED 396 (878)
T ss_dssp TTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBT----TBCCEEECCCGGGCCGGG
T ss_pred CCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcC----CCcceEEecchhcccccc
Confidence 57799999999999999988762 469999999999999943 3322111110 01114455565542
Q ss_pred CCCccEEEEcccc
Q 020710 217 DGKYDTVVCLDVL 229 (322)
Q Consensus 217 ~~~fD~V~~~~~l 229 (322)
.++||+|+++--+
T Consensus 397 ~~kFDVVIgNPPY 409 (878)
T 3s1s_A 397 FANVSVVVMNPPY 409 (878)
T ss_dssp GTTEEEEEECCBC
T ss_pred cCCCCEEEECCCc
Confidence 5789999998765
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=97.83 E-value=3.8e-05 Score=69.84 Aligned_cols=110 Identities=11% Similarity=0.044 Sum_probs=72.5
Q ss_pred CCCCeEEEECCCcccchHHHHhc-CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-------CC
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQ-GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------DG 218 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------~~ 218 (322)
.++.+||-||.|.|..++.+.+. ..+|+.|||++.+++.+++.+............-.+++++.+|+... .+
T Consensus 204 ~~pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~ 283 (381)
T 3c6k_A 204 YTGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGR 283 (381)
T ss_dssp CTTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTC
T ss_pred CCCCeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccC
Confidence 35689999999999999999987 45799999999999999988643211000000001236778886543 46
Q ss_pred CccEEEEccccc-------ccCcch-HHHHHHHHHhccCCeEEEEE
Q 020710 219 KYDTVVCLDVLI-------HYPQSK-ADGMIAHLASLAEKRLILSF 256 (322)
Q Consensus 219 ~fD~V~~~~~l~-------~~~~~~-~~~~l~~l~~~~~~~~il~~ 256 (322)
+||+|+.-..-. ...... ..++++.+++.++++|++..
T Consensus 284 ~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~ 329 (381)
T 3c6k_A 284 EFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFT 329 (381)
T ss_dssp CEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred ceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEE
Confidence 899999742210 111111 25778889998888887764
|
| >1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A | Back alignment and structure |
|---|
Probab=97.78 E-value=0.00047 Score=62.08 Aligned_cols=147 Identities=14% Similarity=0.088 Sum_probs=96.4
Q ss_pred CCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhcc------C--C-----CCCCCCCceEEcc
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLAD------N--G-----GEAPVMPKFEVKD 212 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~------~--~-----~~~~~~~~~~~~d 212 (322)
+...|+.+|||.......|... +..++-||. |++++.-++.+.+.+... . . .....+..++..|
T Consensus 97 ~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~-P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~D 175 (334)
T 1rjd_A 97 EKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACD 175 (334)
T ss_dssp SSEEEEEETCTTCCTHHHHHHHCTTEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECC
T ss_pred CCcEEEEeCCCCccHHHHhcCcCCCCEEEECCC-HHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEecC
Confidence 4678999999999999999874 567778887 888887777776542100 0 0 0001122677888
Q ss_pred cccC------------CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEEC---C---C-hhhHHHHHH----h
Q 020710 213 LESL------------DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFA---P---K-TFYYDLLKR----V 269 (322)
Q Consensus 213 ~~~~------------~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~---~---~-~~~~~~~~~----~ 269 (322)
+.+. .+...++++-.++++++.+....+++.+.+..+++.++.+. + . .+...+... .
T Consensus 176 L~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~~~~~~v~~e~i~~~~~~~~fg~~m~~~l~~~r 255 (334)
T 1rjd_A 176 LNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKFSHGLWISYDPIGGSQPNDRFGAIMQSNLKESR 255 (334)
T ss_dssp TTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHCSSEEEEEEEECCCCSTTCCHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhCCCcEEEEEeccCCCCCcchHHHHHHHHhhccc
Confidence 7663 14567888889999999988999999999877666655442 2 1 121222222 2
Q ss_pred hccCCCCCCccccccCCHHHHHHHHHHCCCE
Q 020710 270 GELFPGPSKATRAYLHAEADVERALQKVGWK 300 (322)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~ 300 (322)
+..+.. .. .+.+.++..+.|.++||+
T Consensus 256 g~~l~~----~~-~y~s~~~~~~rl~~~Gf~ 281 (334)
T 1rjd_A 256 NLEMPT----LM-TYNSKEKYASRWSAAPNV 281 (334)
T ss_dssp CCCCTT----TT-TTCSHHHHHGGGTTSSEE
T ss_pred CCcccc----cc-cCCCHHHHHHHHHHCCCC
Confidence 222221 11 235889999999999997
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=97.67 E-value=8.5e-05 Score=64.58 Aligned_cols=60 Identities=22% Similarity=0.171 Sum_probs=49.9
Q ss_pred hhHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhh
Q 020710 131 SKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEEL 194 (322)
Q Consensus 131 ~~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~ 194 (322)
..+++.+++... .++..|||..||+|..+....+.|.+++|+|+++..++.+++++...+
T Consensus 199 ~~l~~~~i~~~~----~~~~~vlD~f~GsGtt~~~a~~~gr~~ig~e~~~~~~~~~~~r~~~~~ 258 (260)
T 1g60_A 199 RDLIERIIRASS----NPNDLVLDCFMGSGTTAIVAKKLGRNFIGCDMNAEYVNQANFVLNQLE 258 (260)
T ss_dssp HHHHHHHHHHHC----CTTCEEEESSCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHhC----CCCCEEEECCCCCCHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcc
Confidence 456666666654 358899999999999999999999999999999999999999987543
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00013 Score=61.41 Aligned_cols=89 Identities=18% Similarity=0.095 Sum_probs=60.0
Q ss_pred hHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc-CC-EEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceE
Q 020710 132 KTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ-GA-IVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFE 209 (322)
Q Consensus 132 ~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~-~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~ 209 (322)
....++.++.......++.+|||+||++|.++.+.+.. |. +|+|+|+-..-.+. ....+..++. .++|.
T Consensus 62 Ra~~KL~ei~ek~~l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~-P~~~~s~gwn--------~v~fk 132 (267)
T 3p8z_A 62 RGSAKLQWFVERNMVIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEE-PVPMSTYGWN--------IVKLM 132 (267)
T ss_dssp THHHHHHHHHHTTSSCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCC-CCCCCCTTTT--------SEEEE
T ss_pred hHHHHHHHHHHhcCCCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccC-cchhhhcCcC--------ceEEE
Confidence 34466666666665567889999999999999988877 55 59999986531100 0000112222 24888
Q ss_pred Ec-ccccC-CCCccEEEEcccc
Q 020710 210 VK-DLESL-DGKYDTVVCLDVL 229 (322)
Q Consensus 210 ~~-d~~~~-~~~fD~V~~~~~l 229 (322)
.+ |+..+ ..++|+|+|-..=
T Consensus 133 ~gvDv~~~~~~~~DtllcDIge 154 (267)
T 3p8z_A 133 SGKDVFYLPPEKCDTLLCDIGE 154 (267)
T ss_dssp CSCCGGGCCCCCCSEEEECCCC
T ss_pred eccceeecCCccccEEEEecCC
Confidence 88 87655 6789999997664
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00037 Score=60.60 Aligned_cols=95 Identities=15% Similarity=0.044 Sum_probs=62.4
Q ss_pred hHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc-CC-EEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceE
Q 020710 132 KTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ-GA-IVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFE 209 (322)
Q Consensus 132 ~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~-~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~ 209 (322)
....++.++.......++.+|||+||++|.++.+.+.. |. +|+|+|+-..-.+. ....+..++.. +.|.
T Consensus 78 R~~~KL~ei~~~~~l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~-P~~~~ql~w~l--------V~~~ 148 (321)
T 3lkz_A 78 RGTAKLRWLVERRFLEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEE-PQLVQSYGWNI--------VTMK 148 (321)
T ss_dssp THHHHHHHHHHTTSCCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCC-CCCCCBTTGGG--------EEEE
T ss_pred hHHHHHHHHHHhcCCCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccC-cchhhhcCCcc--------eEEE
Confidence 34567777777655667889999999999999988877 55 59999986541000 00000111111 3677
Q ss_pred Ec-ccccC-CCCccEEEEcccccccCcch
Q 020710 210 VK-DLESL-DGKYDTVVCLDVLIHYPQSK 236 (322)
Q Consensus 210 ~~-d~~~~-~~~fD~V~~~~~l~~~~~~~ 236 (322)
.+ |+..+ ...+|+|+|-.. +.-+.+.
T Consensus 149 ~~~Dv~~l~~~~~D~ivcDig-eSs~~~~ 176 (321)
T 3lkz_A 149 SGVDVFYRPSECCDTLLCDIG-ESSSSAE 176 (321)
T ss_dssp CSCCTTSSCCCCCSEEEECCC-CCCSCHH
T ss_pred eccCHhhCCCCCCCEEEEECc-cCCCChh
Confidence 76 87666 577999999877 6666544
|
| >1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26 | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00091 Score=60.47 Aligned_cols=72 Identities=15% Similarity=0.197 Sum_probs=54.8
Q ss_pred CCeEEEECCCcccchHHHHhcC--CE-EEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccCC------CC
Q 020710 149 GIAVCDAGCGTGSLAIPLAKQG--AI-VSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESLD------GK 219 (322)
Q Consensus 149 ~~~VLDvGcG~G~~~~~la~~~--~~-v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------~~ 219 (322)
..+|+|+.||.|.++..+...| ++ |.++|+++.+++..+.++... .++.+|+.+.. ..
T Consensus 2 ~~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~~~-------------~~~~~Di~~~~~~~~~~~~ 68 (343)
T 1g55_A 2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPHT-------------QLLAKTIEGITLEEFDRLS 68 (343)
T ss_dssp CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTTS-------------CEECSCGGGCCHHHHHHHC
T ss_pred CCeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhcccc-------------ccccCCHHHccHhHcCcCC
Confidence 4689999999999999999888 44 899999999999998887431 56778887762 26
Q ss_pred ccEEEEcccccccC
Q 020710 220 YDTVVCLDVLIHYP 233 (322)
Q Consensus 220 fD~V~~~~~l~~~~ 233 (322)
+|+|+...-.+.+.
T Consensus 69 ~D~l~~gpPCq~fS 82 (343)
T 1g55_A 69 FDMILMSPPCQPFT 82 (343)
T ss_dssp CSEEEECCC-----
T ss_pred cCEEEEcCCCcchh
Confidence 99999876544443
|
| >2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A* | Back alignment and structure |
|---|
Probab=97.52 E-value=0.0008 Score=59.92 Aligned_cols=150 Identities=15% Similarity=0.140 Sum_probs=91.1
Q ss_pred CCeEEEECCCcccchHHHHh-cCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-----------
Q 020710 149 GIAVCDAGCGTGSLAIPLAK-QGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL----------- 216 (322)
Q Consensus 149 ~~~VLDvGcG~G~~~~~la~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~----------- 216 (322)
...|+++|||.=.....+.. .+.+|+=|| -|.+++..++.+.+.+... ..+..++..|+.+.
T Consensus 103 ~~QvV~LGaGlDTra~Rl~~~~~~~v~evD-~P~vi~~k~~lL~~~~~~~-----~~~~~~v~~Dl~d~~~~~l~~~g~d 176 (310)
T 2uyo_A 103 IRQFVILASGLDSRAYRLDWPTGTTVYEID-QPKVLAYKSTTLAEHGVTP-----TADRREVPIDLRQDWPPALRSAGFD 176 (310)
T ss_dssp CCEEEEETCTTCCHHHHSCCCTTCEEEEEE-CHHHHHHHHHHHHHTTCCC-----SSEEEEEECCTTSCHHHHHHHTTCC
T ss_pred CCeEEEeCCCCCchhhhccCCCCcEEEEcC-CHHHHHHHHHHHHhcCCCC-----CCCeEEEecchHhhHHHHHHhccCC
Confidence 35699999998887766653 257899999 5999999888886532210 01126777887642
Q ss_pred CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEEC--CChh--hHHHHHHhh-ccCCCCC-----C-ccccccC
Q 020710 217 DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFA--PKTF--YYDLLKRVG-ELFPGPS-----K-ATRAYLH 285 (322)
Q Consensus 217 ~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~--~~~~--~~~~~~~~~-~~~~~~~-----~-~~~~~~~ 285 (322)
...-=++++-.+++|++++....+++.+.....+|..+.+. +... .......+. +.+.... . ..-.+..
T Consensus 177 ~~~Pt~~i~Egvl~Yl~~~~~~~ll~~l~~~~~~gs~l~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~ 256 (310)
T 2uyo_A 177 PSARTAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVETSPLHGDEWREQMQLRFRRVSDALGFEQAVDVQELIYHD 256 (310)
T ss_dssp TTSCEEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEECCCTTCSHHHHHHHHHHHHHHC-----------CCTTCC
T ss_pred CCCCEEEEEechHhhCCHHHHHHHHHHHHHhCCCCeEEEEEecCCCCcchhHHHHHHHHHHHHHcCCcCCCCccccccCC
Confidence 12344677778999999888889999998875455444332 2211 100011111 2221111 0 0111112
Q ss_pred C-HHHHHHHHHHCCCEEEEE
Q 020710 286 A-EADVERALQKVGWKIRKR 304 (322)
Q Consensus 286 ~-~~~~~~~l~~aGf~vv~~ 304 (322)
+ .+++++.|.+.||+.+..
T Consensus 257 ~~~~~~~~~f~~~G~~~~~~ 276 (310)
T 2uyo_A 257 ENRAVVADWLNRHGWRATAQ 276 (310)
T ss_dssp TTCCCHHHHHTTTTEEEEEE
T ss_pred CChHHHHHHHHHCcCccccC
Confidence 4 679999999999998843
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=97.51 E-value=0.0011 Score=63.40 Aligned_cols=88 Identities=13% Similarity=0.215 Sum_probs=63.7
Q ss_pred hhHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc---------------CCEEEEEeCCHHHHHHHHHHhHHhhh
Q 020710 131 SKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ---------------GAIVSASDISAAMVAEARKKAEEELL 195 (322)
Q Consensus 131 ~~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~---------------~~~v~gvD~s~~~l~~a~~~~~~~~~ 195 (322)
...++.+++++... ++.+|+|.+||+|.++....+. ...++|+|+++.+...|+-++--++.
T Consensus 203 ~~Vv~lmv~l~~p~---~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~ 279 (530)
T 3ufb_A 203 RPVVRFMVEVMDPQ---LGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGL 279 (530)
T ss_dssp HHHHHHHHHHHCCC---TTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhhccC---CCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCC
Confidence 34556666666543 5779999999999998776542 24699999999999999887766655
Q ss_pred ccCCCCCCCCCceEEcccccC-------CCCccEEEEcccc
Q 020710 196 ADNGGEAPVMPKFEVKDLESL-------DGKYDTVVCLDVL 229 (322)
Q Consensus 196 ~~~~~~~~~~~~~~~~d~~~~-------~~~fD~V~~~~~l 229 (322)
.. ..+..+|.... ..+||+|+++--+
T Consensus 280 ~~--------~~I~~~dtL~~~~~~~~~~~~fD~Il~NPPf 312 (530)
T 3ufb_A 280 EY--------PRIDPENSLRFPLREMGDKDRVDVILTNPPF 312 (530)
T ss_dssp SC--------CEEECSCTTCSCGGGCCGGGCBSEEEECCCS
T ss_pred cc--------ccccccccccCchhhhcccccceEEEecCCC
Confidence 32 15666665432 3579999998665
|
| >3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00014 Score=64.85 Aligned_cols=84 Identities=17% Similarity=0.100 Sum_probs=64.9
Q ss_pred hhHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc---CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCc
Q 020710 131 SKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ---GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPK 207 (322)
Q Consensus 131 ~~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~ 207 (322)
..+++++++.+... ++..++|..||.|..+..+++. ..+|+|+|.++.+++.++ ++. ..++ .
T Consensus 43 pVLl~Evl~~L~i~---pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL~----~~Rv-------~ 107 (347)
T 3tka_A 43 TVLLDEAVNGLNIR---PDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TID----DPRF-------S 107 (347)
T ss_dssp CTTTHHHHHHTCCC---TTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TCC----CTTE-------E
T ss_pred cccHHHHHHhhCCC---CCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hhc----CCcE-------E
Confidence 34668888888754 6889999999999999999987 358999999999999884 441 2233 7
Q ss_pred eEEcccccC---------CCCccEEEEcccc
Q 020710 208 FEVKDLESL---------DGKYDTVVCLDVL 229 (322)
Q Consensus 208 ~~~~d~~~~---------~~~fD~V~~~~~l 229 (322)
++.+++.++ .+++|.|+..-.+
T Consensus 108 lv~~nF~~l~~~L~~~g~~~~vDgILfDLGV 138 (347)
T 3tka_A 108 IIHGPFSALGEYVAERDLIGKIDGILLDLGV 138 (347)
T ss_dssp EEESCGGGHHHHHHHTTCTTCEEEEEEECSC
T ss_pred EEeCCHHHHHHHHHhcCCCCcccEEEECCcc
Confidence 888887765 1368999886554
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=97.44 E-value=2.1e-05 Score=87.94 Aligned_cols=154 Identities=14% Similarity=0.099 Sum_probs=70.8
Q ss_pred HHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc-C------CEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCce
Q 020710 136 NTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ-G------AIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKF 208 (322)
Q Consensus 136 ~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~-~------~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~ 208 (322)
.+++.+.+....+..+|||||.|+|..+..+.+. + .+++..|+|+...+.+++++....+ +.
T Consensus 1228 ~~~~~~~~~~~~~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~di-----------~~ 1296 (2512)
T 2vz8_A 1228 ACVDTALENMASPKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQLHV-----------TQ 1296 (2512)
T ss_dssp HHHHHHHTTSSSSEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHHTE-----------EE
T ss_pred HHHHHHHhcCCCCCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhccc-----------cc
Confidence 3445554432235679999999999987665543 1 2699999999888888887765321 22
Q ss_pred EEccccc----CCCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCCCCCcccccc
Q 020710 209 EVKDLES----LDGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYL 284 (322)
Q Consensus 209 ~~~d~~~----~~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (322)
...|..+ ....||+|++.+++|-.++ +...++++++++++++.+.+..... ..++.....++... ......+
T Consensus 1297 ~~~d~~~~~~~~~~~ydlvia~~vl~~t~~--~~~~l~~~~~lL~p~G~l~~~e~~~-~~~~g~~~~~~~~~-~r~~~~~ 1372 (2512)
T 2vz8_A 1297 GQWDPANPAPGSLGKADLLVCNCALATLGD--PAVAVGNMAATLKEGGFLLLHTLLA-GHPLGEMVGFLTSP-EQGGRHL 1372 (2512)
T ss_dssp ECCCSSCCCC-----CCEEEEECC----------------------CCEEEEEEC-------------------------
T ss_pred ccccccccccCCCCceeEEEEccccccccc--HHHHHHHHHHhcCCCcEEEEEeccc-cccccccccccccc-cccCCcc
Confidence 1123322 2467999999999976666 5588999999877666554421110 00011111111110 0011223
Q ss_pred CCHHHHHHHHHHCCCEEEEE
Q 020710 285 HAEADVERALQKVGWKIRKR 304 (322)
Q Consensus 285 ~~~~~~~~~l~~aGf~vv~~ 304 (322)
.+.++|.++|.++||..+..
T Consensus 1373 ~~~~~w~~~l~~~gf~~~~~ 1392 (2512)
T 2vz8_A 1373 LSQDQWESLFAGASLHLVAL 1392 (2512)
T ss_dssp ---CTTTTSSTTTTEEEEEE
T ss_pred cCHHHHHHHHHhCCCceeee
Confidence 56778888999999987754
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00024 Score=64.50 Aligned_cols=77 Identities=19% Similarity=0.213 Sum_probs=59.3
Q ss_pred CCCCeEEEECCCcccchHHHHhcCC--EEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC----CCCc
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQGA--IVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL----DGKY 220 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~~f 220 (322)
.++.+|||+++|.|.=+..+++.+. .|+++|+|+.-++..++++...+..... ...++.+...|...+ .+.|
T Consensus 147 ~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~--~~~~v~v~~~D~~~~~~~~~~~f 224 (359)
T 4fzv_A 147 QPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIR--DGNQVRVTSWDGRKWGELEGDTY 224 (359)
T ss_dssp CTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTT--TSSSEEEECCCGGGHHHHSTTCE
T ss_pred CCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhc--cCCceEEEeCchhhcchhccccC
Confidence 4788999999999999999998844 6999999999999999998876543200 012236667777654 5789
Q ss_pred cEEEE
Q 020710 221 DTVVC 225 (322)
Q Consensus 221 D~V~~ 225 (322)
|.|++
T Consensus 225 D~VLl 229 (359)
T 4fzv_A 225 DRVLV 229 (359)
T ss_dssp EEEEE
T ss_pred CEEEE
Confidence 99996
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=97.41 E-value=7.2e-05 Score=65.30 Aligned_cols=49 Identities=18% Similarity=0.124 Sum_probs=37.4
Q ss_pred HHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc-CC-EEEEEeCCHH
Q 020710 133 TVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ-GA-IVSASDISAA 181 (322)
Q Consensus 133 ~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~-~~-~v~gvD~s~~ 181 (322)
..-+++++.......++.+|||+||++|.++..+++. +. .|+|+|+...
T Consensus 66 aa~KL~ei~ek~l~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~ 116 (300)
T 3eld_A 66 GAAKIRWLHERGYLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIE 116 (300)
T ss_dssp THHHHHHHHHHTSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCT
T ss_pred HHHHHHHHHHhCCCCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEeccc
Confidence 3456666666532457789999999999999999986 44 5899999754
|
| >3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=97.38 E-value=0.0023 Score=58.53 Aligned_cols=71 Identities=18% Similarity=0.164 Sum_probs=56.3
Q ss_pred CeEEEECCCcccchHHHHhcCCE-EEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-----------C
Q 020710 150 IAVCDAGCGTGSLAIPLAKQGAI-VSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-----------D 217 (322)
Q Consensus 150 ~~VLDvGcG~G~~~~~la~~~~~-v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-----------~ 217 (322)
.+++|+-||.|.++..+...|.+ |.++|+++.+++..+.++... .++++|+.++ .
T Consensus 3 ~~vidLFsG~GGlslG~~~aG~~~v~avE~d~~a~~t~~~N~~~~-------------~~~~~DI~~~~~~~~~~~~~~~ 69 (376)
T 3g7u_A 3 LNVIDLFSGVGGLSLGAARAGFDVKMAVEIDQHAINTHAINFPRS-------------LHVQEDVSLLNAEIIKGFFKND 69 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHHTCEEEEEECSCHHHHHHHHHHCTTS-------------EEECCCGGGCCHHHHHHHHCSC
T ss_pred CeEEEEccCcCHHHHHHHHCCCcEEEEEeCCHHHHHHHHHhCCCC-------------ceEecChhhcCHHHHHhhcccC
Confidence 58999999999999999999987 679999999998888775421 5677777664 2
Q ss_pred CCccEEEEcccccccC
Q 020710 218 GKYDTVVCLDVLIHYP 233 (322)
Q Consensus 218 ~~fD~V~~~~~l~~~~ 233 (322)
+.+|+|+...-.+.+.
T Consensus 70 ~~~D~i~ggpPCQ~fS 85 (376)
T 3g7u_A 70 MPIDGIIGGPPCQGFS 85 (376)
T ss_dssp CCCCEEEECCCCCTTC
T ss_pred CCeeEEEecCCCCCcc
Confidence 5799999866555443
|
| >2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ... | Back alignment and structure |
|---|
Probab=97.22 E-value=0.0051 Score=55.12 Aligned_cols=69 Identities=16% Similarity=0.120 Sum_probs=53.3
Q ss_pred CCeEEEECCCcccchHHHHhcCCE-EEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC----CCCccEE
Q 020710 149 GIAVCDAGCGTGSLAIPLAKQGAI-VSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL----DGKYDTV 223 (322)
Q Consensus 149 ~~~VLDvGcG~G~~~~~la~~~~~-v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~~fD~V 223 (322)
+.+++|+.||.|.++..+...|++ +.++|+++.+++..+.++... ..+|+.++ -..+|+|
T Consensus 11 ~~~~~dLFaG~Gg~~~g~~~aG~~~v~~~e~d~~a~~t~~~N~~~~---------------~~~Di~~~~~~~~~~~D~l 75 (327)
T 2c7p_A 11 GLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGEK---------------PEGDITQVNEKTIPDHDIL 75 (327)
T ss_dssp TCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHSCC---------------CBSCGGGSCGGGSCCCSEE
T ss_pred CCcEEEECCCcCHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCCC---------------CcCCHHHcCHhhCCCCCEE
Confidence 578999999999999999999987 788999999999888876421 14666554 2358999
Q ss_pred EEccccccc
Q 020710 224 VCLDVLIHY 232 (322)
Q Consensus 224 ~~~~~l~~~ 232 (322)
+...-.+.+
T Consensus 76 ~~gpPCQ~f 84 (327)
T 2c7p_A 76 CAGFPCQAF 84 (327)
T ss_dssp EEECCCTTT
T ss_pred EECCCCCCc
Confidence 986544443
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00038 Score=59.47 Aligned_cols=90 Identities=14% Similarity=-0.013 Sum_probs=53.6
Q ss_pred chhHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHH-hhhccCCCCCCCCC
Q 020710 130 HSKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEE-ELLADNGGEAPVMP 206 (322)
Q Consensus 130 ~~~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~-~~~~~~~~~~~~~~ 206 (322)
.....-+++++-.+.-..++.+|+|+||+.|.++.+.++. -..|.|.++.... . ....... .++.. +
T Consensus 55 RSRAayKL~EIdeK~likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~-~-~~P~~~~~~Gv~~--------i 124 (269)
T 2px2_A 55 VSRGTAKLRWLVERRFVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPG-H-EEPMLMQSYGWNI--------V 124 (269)
T ss_dssp SSTHHHHHHHHHHTTSCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTT-S-CCCCCCCSTTGGG--------E
T ss_pred ccHHHHHHHHHHHcCCCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcccc-c-cCCCcccCCCceE--------E
Confidence 3445566766666654567889999999999999999987 2244555543320 0 0000000 11100 1
Q ss_pred ceEEc-ccccCC-CCccEEEEcccc
Q 020710 207 KFEVK-DLESLD-GKYDTVVCLDVL 229 (322)
Q Consensus 207 ~~~~~-d~~~~~-~~fD~V~~~~~l 229 (322)
.|.++ |+.+++ .++|+|+|-+.=
T Consensus 125 ~~~~G~Df~~~~~~~~DvVLSDMAP 149 (269)
T 2px2_A 125 TMKSGVDVFYKPSEISDTLLCDIGE 149 (269)
T ss_dssp EEECSCCGGGSCCCCCSEEEECCCC
T ss_pred EeeccCCccCCCCCCCCEEEeCCCC
Confidence 33336 988774 589999997654
|
| >3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A* | Back alignment and structure |
|---|
Probab=97.17 E-value=0.017 Score=51.72 Aligned_cols=153 Identities=11% Similarity=0.110 Sum_probs=92.4
Q ss_pred CCeEEEECCCcccchHHHHhc---CCEEEEEeCCHHHHHHHHHHhHHhhh-------c---cCCC-----CCCCCCceEE
Q 020710 149 GIAVCDAGCGTGSLAIPLAKQ---GAIVSASDISAAMVAEARKKAEEELL-------A---DNGG-----EAPVMPKFEV 210 (322)
Q Consensus 149 ~~~VLDvGcG~G~~~~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~~-------~---~~~~-----~~~~~~~~~~ 210 (322)
...|+-+|||.-.....+... +..++=||. |+.++.=++.+.+.+. . +... .+..+..++.
T Consensus 91 ~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EVD~-P~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~l~s~~y~~v~ 169 (334)
T 3iei_A 91 HCQIVNLGAGMDTTFWRLKDEDLLSSKYFEVDF-PMIVTRKLHSIKCKPPLSSPILELHSEDTLQMDGHILDSKRYAVIG 169 (334)
T ss_dssp CSEEEEETCTTCCHHHHHHHTTCCCSEEEEEEC-HHHHHHHHHHHHHCHHHHHHHHHHSSSSSCBCCTTEEECSSEEEEE
T ss_pred CCEEEEeCCCcCchHHHhcCCCCCCCeEEECCc-HHHHHHHHHHHhhchhhhhhhcccccccccccccccCCCCceEEEc
Confidence 568999999999888888764 567777887 5566543343432110 0 0000 0011226777
Q ss_pred cccccC------------C-CCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEECCC----hhhHHHHHHhhccC
Q 020710 211 KDLESL------------D-GKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPK----TFYYDLLKRVGELF 273 (322)
Q Consensus 211 ~d~~~~------------~-~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~----~~~~~~~~~~~~~~ 273 (322)
.|+.+. + ...=++++-.++.+++.+....+++.+.+..+++.++.+.+- .+...+.+.+...-
T Consensus 170 ~DL~d~~~l~~~L~~~g~d~~~Ptl~iaEGvL~YL~~~~~~~ll~~ia~~f~~~~~i~yE~i~p~d~fg~~M~~~l~~~g 249 (334)
T 3iei_A 170 ADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYMTPEQSANLLKWAANSFERAMFINYEQVNMGDRFGQIMIENLRRRQ 249 (334)
T ss_dssp CCTTCHHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHCSSEEEEEEEECCTTSHHHHHHHHHHHTTT
T ss_pred cccccchhHHHHHHhcCCCCCCCEEEEEchhhhCCCHHHHHHHHHHHHHhCCCceEEEEeccCCCCHHHHHHHHHHHHhC
Confidence 887652 1 233477777899999998899999999987777766655421 22222222222110
Q ss_pred CCCCCccccccCCHHHHHHHHHHCCCEEEEE
Q 020710 274 PGPSKATRAYLHAEADVERALQKVGWKIRKR 304 (322)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~l~~aGf~vv~~ 304 (322)
-+-..... +.+.++..+.+.++||+.++.
T Consensus 250 -~pl~sl~~-y~t~~~~~~r~~~~Gw~~~~~ 278 (334)
T 3iei_A 250 -CDLAGVET-CKSLESQKERLLSNGWETASA 278 (334)
T ss_dssp -CCCTTGGG-GGCHHHHHHHHHTTTCSEEEE
T ss_pred -CCCccccc-CCCHHHHHHHHHHcCCCccee
Confidence 01111112 347899999999999998763
|
| >3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=97.05 E-value=0.01 Score=53.07 Aligned_cols=124 Identities=17% Similarity=0.121 Sum_probs=81.2
Q ss_pred CCeEEEECCCcccchHHHHhcCC--E-E-EEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC------CC
Q 020710 149 GIAVCDAGCGTGSLAIPLAKQGA--I-V-SASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL------DG 218 (322)
Q Consensus 149 ~~~VLDvGcG~G~~~~~la~~~~--~-v-~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~------~~ 218 (322)
..+++|+.||.|.+...+.+.|. + | .++|+++.+++..+.++.. .+..+|+.++ ..
T Consensus 10 ~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~--------------~~~~~DI~~~~~~~i~~~ 75 (327)
T 3qv2_A 10 QVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKE--------------EVQVKNLDSISIKQIESL 75 (327)
T ss_dssp CEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCC--------------CCBCCCTTTCCHHHHHHT
T ss_pred CCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCC--------------CcccCChhhcCHHHhccC
Confidence 56899999999999999998883 5 6 6999999999888877643 3456677665 23
Q ss_pred CccEEEEccccccc--C--------cchHHHHHHHHHh-c---c--CCeEEEEECCChhhHHHHHHhhccCCCCCCcccc
Q 020710 219 KYDTVVCLDVLIHY--P--------QSKADGMIAHLAS-L---A--EKRLILSFAPKTFYYDLLKRVGELFPGPSKATRA 282 (322)
Q Consensus 219 ~fD~V~~~~~l~~~--~--------~~~~~~~l~~l~~-~---~--~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (322)
.+|+++...-.+.+ . ++....++.++.+ + . ++..++.-+-..+.. .
T Consensus 76 ~~Dil~ggpPCQ~fs~S~ag~~~~~~d~r~~L~~~~~r~~i~~~~~~P~~~~lENV~gl~~-----------------~- 137 (327)
T 3qv2_A 76 NCNTWFMSPPCQPYNNSIMSKHKDINDPRAKSVLHLYRDILPYLINKPKHIFIENVPLFKE-----------------S- 137 (327)
T ss_dssp CCCEEEECCCCTTCSHHHHTTTCTTTCGGGHHHHHHHHTTGGGCSSCCSEEEEEECGGGGG-----------------S-
T ss_pred CCCEEEecCCccCcccccCCCCCCCccccchhHHHHHHHHHHHhccCCCEEEEEchhhhcC-----------------h-
Confidence 69999987665555 1 1122233333333 2 3 455555443322210 0
Q ss_pred ccCCHHHHHHHHHHCCCEEEEEee
Q 020710 283 YLHAEADVERALQKVGWKIRKRGL 306 (322)
Q Consensus 283 ~~~~~~~~~~~l~~aGf~vv~~~~ 306 (322)
...+.+.+.|++.||.+....+
T Consensus 138 --~~~~~i~~~l~~~GY~v~~~vl 159 (327)
T 3qv2_A 138 --LVFKEIYNILIKNQYYIKDIIC 159 (327)
T ss_dssp --HHHHHHHHHHHHTTCEEEEEEE
T ss_pred --HHHHHHHHHHHhCCCEEEEEEE
Confidence 0246788889999998866543
|
| >3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A* | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0088 Score=53.43 Aligned_cols=126 Identities=12% Similarity=0.156 Sum_probs=79.3
Q ss_pred CeEEEECCCcccchHHHHhcCCE-EEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC----CCCccEEE
Q 020710 150 IAVCDAGCGTGSLAIPLAKQGAI-VSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL----DGKYDTVV 224 (322)
Q Consensus 150 ~~VLDvGcG~G~~~~~la~~~~~-v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~~fD~V~ 224 (322)
.+|+|+-||.|.+...|.+.|.+ +.++|+++.+++..+.++.. .++.+|+.++ -...|+++
T Consensus 1 mkvidLFsG~GG~~~G~~~aG~~~v~a~e~d~~a~~ty~~N~~~--------------~~~~~DI~~i~~~~~~~~D~l~ 66 (331)
T 3ubt_Y 1 MNLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNHSA--------------KLIKGDISKISSDEFPKCDGII 66 (331)
T ss_dssp CEEEEESCTTCHHHHHHHHTTCEEEEEEECCTTTHHHHHHHCCS--------------EEEESCGGGCCGGGSCCCSEEE
T ss_pred CeEEEeCcCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHCCC--------------CcccCChhhCCHhhCCcccEEE
Confidence 47999999999999999888987 67999999998888776532 6778888776 25689998
Q ss_pred EcccccccC--------cchHHHHHHHHHhc---cCCeEEEEECCChhhHHHHHHhhccCCCCCCccccccCCHHHHHHH
Q 020710 225 CLDVLIHYP--------QSKADGMIAHLASL---AEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADVERA 293 (322)
Q Consensus 225 ~~~~l~~~~--------~~~~~~~l~~l~~~---~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (322)
...-.+.+. ++....++.++.++ .++..++.-+-..+.. . . + ....+.+.+.
T Consensus 67 ggpPCQ~fS~ag~~~g~~d~R~~L~~~~~r~i~~~~Pk~~~~ENV~gl~~-----------~--~--~--~~~~~~i~~~ 129 (331)
T 3ubt_Y 67 GGPPSQSWSEGGSLRGIDDPRGKLFYEYIRILKQKKPIFFLAENVKGMMA-----------Q--R--H--NKAVQEFIQE 129 (331)
T ss_dssp CCCCGGGTEETTEECCTTCGGGHHHHHHHHHHHHHCCSEEEEEECCGGGG-----------C--T--T--SHHHHHHHHH
T ss_pred ecCCCCCcCCCCCccCCCCchhHHHHHHHHHHhccCCeEEEeeeeccccc-----------c--c--c--cchhhhhhhh
Confidence 754333322 11122333333332 3555555432222110 0 0 0 0124577788
Q ss_pred HHHCCCEEEEEee
Q 020710 294 LQKVGWKIRKRGL 306 (322)
Q Consensus 294 l~~aGf~vv~~~~ 306 (322)
|.+.||.+...-+
T Consensus 130 l~~~GY~v~~~vl 142 (331)
T 3ubt_Y 130 FDNAGYDVHIILL 142 (331)
T ss_dssp HHHHTEEEEEEEE
T ss_pred hccCCcEEEEEec
Confidence 8899998765433
|
| >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0026 Score=57.51 Aligned_cols=74 Identities=12% Similarity=0.011 Sum_probs=55.0
Q ss_pred hHHHHHHHHhhhcC---CCCCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCC
Q 020710 132 KTVENTMQMLNDEG---SLKGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMP 206 (322)
Q Consensus 132 ~~~~~~~~~l~~~~---~~~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~ 206 (322)
..++++++.+.... ..++..|||||.|.|.++..|++. +.+|+++|+++.++...++.. .. .++
T Consensus 39 ~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~-~~---~~l------- 107 (353)
T 1i4w_A 39 TVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKF-EG---SPL------- 107 (353)
T ss_dssp HHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHT-TT---SSC-------
T ss_pred HHHHHHHHhccCCcccCcCCCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhc-cC---CCE-------
Confidence 34567777765431 013578999999999999999986 568999999999999988876 21 222
Q ss_pred ceEEcccccC
Q 020710 207 KFEVKDLESL 216 (322)
Q Consensus 207 ~~~~~d~~~~ 216 (322)
+++.+|+...
T Consensus 108 ~ii~~D~l~~ 117 (353)
T 1i4w_A 108 QILKRDPYDW 117 (353)
T ss_dssp EEECSCTTCH
T ss_pred EEEECCccch
Confidence 7888887543
|
| >3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A* | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0038 Score=55.07 Aligned_cols=126 Identities=15% Similarity=0.103 Sum_probs=72.7
Q ss_pred CCCeEEEECCCcccchHHHHh----c--CC--EEEEEeCCH--------HHHHHHHHHh-HHhh-hccCCCCCCCCCceE
Q 020710 148 KGIAVCDAGCGTGSLAIPLAK----Q--GA--IVSASDISA--------AMVAEARKKA-EEEL-LADNGGEAPVMPKFE 209 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~----~--~~--~v~gvD~s~--------~~l~~a~~~~-~~~~-~~~~~~~~~~~~~~~ 209 (322)
+.-+|||+|-|||.+.....+ . .. +++.+|..+ ...+...+.. .... ... ......+.
T Consensus 96 ~~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~----~~v~L~l~ 171 (308)
T 3vyw_A 96 KVIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEG----ERLSLKVL 171 (308)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEEC----SSEEEEEE
T ss_pred CCcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccC----CcEEEEEE
Confidence 356899999999998654332 1 23 456666421 1111111111 1110 000 01122667
Q ss_pred EcccccC----C-CCccEEEEcccccccCcchH--HHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCCCCCcccc
Q 020710 210 VKDLESL----D-GKYDTVVCLDVLIHYPQSKA--DGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRA 282 (322)
Q Consensus 210 ~~d~~~~----~-~~fD~V~~~~~l~~~~~~~~--~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (322)
.+|+.+. + ..||+|+.-. +---.+|++ ..+++.+++++++++++..-
T Consensus 172 ~GDa~~~l~~l~~~~~Da~flDg-FsP~kNPeLWs~e~f~~l~~~~~pgg~laTY------------------------- 225 (308)
T 3vyw_A 172 LGDARKRIKEVENFKADAVFHDA-FSPYKNPELWTLDFLSLIKERIDEKGYWVSY------------------------- 225 (308)
T ss_dssp ESCHHHHGGGCCSCCEEEEEECC-SCTTTSGGGGSHHHHHHHHTTEEEEEEEEES-------------------------
T ss_pred echHHHHHhhhcccceeEEEeCC-CCcccCcccCCHHHHHHHHHHhCCCcEEEEE-------------------------
Confidence 7886542 3 5799999743 211122333 68999999998888877531
Q ss_pred ccCCHHHHHHHHHHCCCEEEEEe
Q 020710 283 YLHAEADVERALQKVGWKIRKRG 305 (322)
Q Consensus 283 ~~~~~~~~~~~l~~aGf~vv~~~ 305 (322)
-....+++.|+++||+|.+..
T Consensus 226 --taag~VRR~L~~aGF~V~k~~ 246 (308)
T 3vyw_A 226 --SSSLSVRKSLLTLGFKVGSSR 246 (308)
T ss_dssp --CCCHHHHHHHHHTTCEEEEEE
T ss_pred --eCcHHHHHHHHHCCCEEEecC
Confidence 123578899999999998753
|
| >4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda} | Back alignment and structure |
|---|
Probab=96.85 E-value=0.016 Score=52.05 Aligned_cols=125 Identities=16% Similarity=0.147 Sum_probs=80.8
Q ss_pred CCeEEEECCCcccchHHHHhcCC--E-EEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC------CCC
Q 020710 149 GIAVCDAGCGTGSLAIPLAKQGA--I-VSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL------DGK 219 (322)
Q Consensus 149 ~~~VLDvGcG~G~~~~~la~~~~--~-v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~------~~~ 219 (322)
..+++|+-||.|.+...+.+.|. + |.++|+++.+++..+.++... .+...|+.++ ...
T Consensus 3 ~~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~~~-------------~~~~~DI~~~~~~~~~~~~ 69 (333)
T 4h0n_A 3 SHKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFPET-------------NLLNRNIQQLTPQVIKKWN 69 (333)
T ss_dssp CEEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTTS-------------CEECCCGGGCCHHHHHHTT
T ss_pred CCEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCCCC-------------ceeccccccCCHHHhccCC
Confidence 35899999999999999988875 5 789999999998888776432 4667777665 236
Q ss_pred ccEEEEcccccccC---------cch---HHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCCCCCccccccCCH
Q 020710 220 YDTVVCLDVLIHYP---------QSK---ADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAE 287 (322)
Q Consensus 220 fD~V~~~~~l~~~~---------~~~---~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (322)
+|+++...-.+.+. ++. ...+++-+..+.++..++.-+-..+.. . ...
T Consensus 70 ~D~l~ggpPCQ~fS~ag~~~~~~d~r~~L~~~~~r~i~~~~~P~~~vlENV~gl~~-----------------~---~~~ 129 (333)
T 4h0n_A 70 VDTILMSPPCQPFTRNGKYLDDNDPRTNSFLYLIGILDQLDNVDYILMENVKGFEN-----------------S---TVR 129 (333)
T ss_dssp CCEEEECCCCCCSEETTEECCTTCTTSCCHHHHHHHGGGCTTCCEEEEEECTTGGG-----------------S---HHH
T ss_pred CCEEEecCCCcchhhhhhccCCcCcccccHHHHHHHHHHhcCCCEEEEecchhhhh-----------------h---hHH
Confidence 99999765444433 111 233444443333255555433222210 0 014
Q ss_pred HHHHHHHHHCCCEEEEEee
Q 020710 288 ADVERALQKVGWKIRKRGL 306 (322)
Q Consensus 288 ~~~~~~l~~aGf~vv~~~~ 306 (322)
+.+.+.|++.||.+....+
T Consensus 130 ~~i~~~l~~~GY~v~~~vl 148 (333)
T 4h0n_A 130 NLFIDKLKECNFIYQEFLL 148 (333)
T ss_dssp HHHHHHHHHTTEEEEEEEE
T ss_pred HHHHHHHHhCCCeEEEEEe
Confidence 5788889999998876533
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0017 Score=58.23 Aligned_cols=60 Identities=15% Similarity=0.090 Sum_probs=50.0
Q ss_pred hhHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhh
Q 020710 131 SKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEEL 194 (322)
Q Consensus 131 ~~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~ 194 (322)
..+++.+++... .++..|||.-||+|..+....+.|.+.+|+|+++..++.+++++...+
T Consensus 239 ~~l~~~~i~~~~----~~~~~VlDpF~GsGtt~~aa~~~gr~~ig~e~~~~~~~~~~~r~~~~~ 298 (323)
T 1boo_A 239 AKLPEFFIRMLT----EPDDLVVDIFGGSNTTGLVAERESRKWISFEMKPEYVAASAFRFLDNN 298 (323)
T ss_dssp THHHHHHHHHHC----CTTCEEEETTCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHGGGSCSC
T ss_pred HHHHHHHHHHhC----CCCCEEEECCCCCCHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhcc
Confidence 456666665553 358899999999999999999999999999999999999998876543
|
| >2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59 | Back alignment and structure |
|---|
Probab=96.29 E-value=0.002 Score=56.17 Aligned_cols=106 Identities=8% Similarity=-0.097 Sum_probs=73.0
Q ss_pred HHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccc
Q 020710 135 ENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLE 214 (322)
Q Consensus 135 ~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 214 (322)
...++.+... .+..+||+-+|+|.+++.+...+.+++.+|.++..++..++++... .+ ++++..|..
T Consensus 81 ~~yf~~l~~~---n~~~~LDlfaGSGaLgiEaLS~~d~~vfvE~~~~a~~~L~~Nl~~~---~~-------~~V~~~D~~ 147 (283)
T 2oo3_A 81 LEYISVIKQI---NLNSTLSYYPGSPYFAINQLRSQDRLYLCELHPTEYNFLLKLPHFN---KK-------VYVNHTDGV 147 (283)
T ss_dssp HHHHHHHHHH---SSSSSCCEEECHHHHHHHHSCTTSEEEEECCSHHHHHHHTTSCCTT---SC-------EEEECSCHH
T ss_pred HHHHHHHHHh---cCCCceeEeCCcHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHhCcC---Cc-------EEEEeCcHH
Confidence 4455555543 3567999999999999999887888999999999999988887541 22 278888854
Q ss_pred cC-------CCCccEEEEcccccccCcchHHHHHHHHHh---ccCCeEEEE
Q 020710 215 SL-------DGKYDTVVCLDVLIHYPQSKADGMIAHLAS---LAEKRLILS 255 (322)
Q Consensus 215 ~~-------~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~---~~~~~~il~ 255 (322)
.. ..+||+|++--..+.-. ....+++.+.+ ..+.|.++.
T Consensus 148 ~~L~~l~~~~~~fdLVfiDPPYe~k~--~~~~vl~~L~~~~~r~~~Gi~v~ 196 (283)
T 2oo3_A 148 SKLNALLPPPEKRGLIFIDPSYERKE--EYKEIPYAIKNAYSKFSTGLYCV 196 (283)
T ss_dssp HHHHHHCSCTTSCEEEEECCCCCSTT--HHHHHHHHHHHHHHHCTTSEEEE
T ss_pred HHHHHhcCCCCCccEEEECCCCCCCc--HHHHHHHHHHHhCccCCCeEEEE
Confidence 32 34799999876654222 24455555544 234555544
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=96.09 E-value=0.0081 Score=53.60 Aligned_cols=61 Identities=16% Similarity=0.167 Sum_probs=48.7
Q ss_pred chhHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCCEEEEEeCCH---HHHHHHHHHhHHhh
Q 020710 130 HSKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISA---AMVAEARKKAEEEL 194 (322)
Q Consensus 130 ~~~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~---~~l~~a~~~~~~~~ 194 (322)
...+++.++.... .++..|||.-||+|..+....+.|.+.+|+|+++ ..++.+++++...+
T Consensus 228 p~~l~~~~i~~~~----~~~~~vlDpF~GsGtt~~aa~~~~r~~ig~e~~~~~~~~~~~~~~Rl~~~~ 291 (319)
T 1eg2_A 228 PAAVIERLVRALS----HPGSTVLDFFAGSGVTARVAIQEGRNSICTDAAPVFKEYYQKQLTFLQDDG 291 (319)
T ss_dssp CHHHHHHHHHHHS----CTTCEEEETTCTTCHHHHHHHHHTCEEEEEESSTHHHHHHHHHHHHC----
T ss_pred CHHHHHHHHHHhC----CCCCEEEecCCCCCHHHHHHHHcCCcEEEEECCccHHHHHHHHHHHHHHcc
Confidence 3456666666654 3588999999999999999998899999999999 99999999987654
|
| >3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A | Back alignment and structure |
|---|
Probab=96.08 E-value=0.04 Score=51.85 Aligned_cols=75 Identities=12% Similarity=0.067 Sum_probs=54.0
Q ss_pred CCeEEEECCCcccchHHHHhcCCE-EEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-----------
Q 020710 149 GIAVCDAGCGTGSLAIPLAKQGAI-VSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL----------- 216 (322)
Q Consensus 149 ~~~VLDvGcG~G~~~~~la~~~~~-v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~----------- 216 (322)
..+++|+-||.|.+...+.+.|.+ |.++|+++.+++..+.++..... ..++.+|+.++
T Consensus 88 ~~~viDLFaG~GGlslG~~~aG~~~v~avE~d~~A~~ty~~N~~~~p~----------~~~~~~DI~~i~~~~~~~~~~~ 157 (482)
T 3me5_A 88 AFRFIDLFAGIGGIRRGFESIGGQCVFTSEWNKHAVRTYKANHYCDPA----------THHFNEDIRDITLSHQEGVSDE 157 (482)
T ss_dssp SEEEEEESCTTSHHHHHHHTTTEEEEEEECCCHHHHHHHHHHSCCCTT----------TCEEESCTHHHHCTTCTTSCHH
T ss_pred cceEEEecCCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHhcccCCC----------cceeccchhhhhhccccccchh
Confidence 468999999999999999888887 88999999988887776521110 14566676443
Q ss_pred ---------CCCccEEEEcccccccC
Q 020710 217 ---------DGKYDTVVCLDVLIHYP 233 (322)
Q Consensus 217 ---------~~~fD~V~~~~~l~~~~ 233 (322)
...+|+|+...-.+.+.
T Consensus 158 ~~~~~i~~~~~~~Dvl~gGpPCQ~FS 183 (482)
T 3me5_A 158 AAAEHIRQHIPEHDVLLAGFPCQPFS 183 (482)
T ss_dssp HHHHHHHHHSCCCSEEEEECCCCCC-
T ss_pred hHHhhhhhcCCCCCEEEecCCCcchh
Confidence 14689998765555444
|
| >2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.87 E-value=0.022 Score=50.11 Aligned_cols=68 Identities=22% Similarity=0.193 Sum_probs=53.6
Q ss_pred CCCeEEEECCCcccchHHHHhcCCEE---EEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-------C
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQGAIV---SASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------D 217 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~~~~v---~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------~ 217 (322)
.+.+++|+-||.|.+...+.+.|.++ .++|+++.+++..+.+.... .+..+|+.++ .
T Consensus 15 ~~~~vidLFaG~GG~~~g~~~aG~~~~~v~a~E~d~~a~~ty~~N~~~~-------------~~~~~DI~~i~~~~i~~~ 81 (295)
T 2qrv_A 15 KPIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVRHQGK-------------IMYVGDVRSVTQKHIQEW 81 (295)
T ss_dssp CCEEEEEETCTTTHHHHHHHHTTBCEEEEEEECCCHHHHHHHHHHTTTC-------------EEEECCGGGCCHHHHHHT
T ss_pred CCCEEEEeCcCccHHHHHHHHCCCccceEEEEECCHHHHHHHHHhCCCC-------------ceeCCChHHccHHHhccc
Confidence 46689999999999999999888764 89999999988777665321 4677888776 1
Q ss_pred CCccEEEEccc
Q 020710 218 GKYDTVVCLDV 228 (322)
Q Consensus 218 ~~fD~V~~~~~ 228 (322)
+.+|+++...-
T Consensus 82 ~~~Dll~ggpP 92 (295)
T 2qrv_A 82 GPFDLVIGGSP 92 (295)
T ss_dssp CCCSEEEECCC
T ss_pred CCcCEEEecCC
Confidence 47999998643
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=95.31 E-value=0.16 Score=38.83 Aligned_cols=64 Identities=17% Similarity=0.077 Sum_probs=43.3
Q ss_pred CCeEEEECCCc-cc-chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-------CCC
Q 020710 149 GIAVCDAGCGT-GS-LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------DGK 219 (322)
Q Consensus 149 ~~~VLDvGcG~-G~-~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------~~~ 219 (322)
..+|+=+|||. |. .+..|.+.|.+|+++|.+++.++.+++. +. .++.+|..+. -..
T Consensus 6 ~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~~----~~-----------~~~~gd~~~~~~l~~~~~~~ 70 (141)
T 3llv_A 6 RYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSKEKIELLEDE----GF-----------DAVIADPTDESFYRSLDLEG 70 (141)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHT----TC-----------EEEECCTTCHHHHHHSCCTT
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHC----CC-----------cEEECCCCCHHHHHhCCccc
Confidence 46799999964 22 2333445599999999999877766532 21 6778887654 257
Q ss_pred ccEEEEcc
Q 020710 220 YDTVVCLD 227 (322)
Q Consensus 220 fD~V~~~~ 227 (322)
+|.|+...
T Consensus 71 ~d~vi~~~ 78 (141)
T 3llv_A 71 VSAVLITG 78 (141)
T ss_dssp CSEEEECC
T ss_pred CCEEEEec
Confidence 89988643
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=95.15 E-value=0.12 Score=45.07 Aligned_cols=102 Identities=14% Similarity=0.104 Sum_probs=59.7
Q ss_pred HHHHHHHhhhcC--CCCCCeEEEECC------Ccccch-HHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCC
Q 020710 134 VENTMQMLNDEG--SLKGIAVCDAGC------GTGSLA-IPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPV 204 (322)
Q Consensus 134 ~~~~~~~l~~~~--~~~~~~VLDvGc------G~G~~~-~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~ 204 (322)
..++.++|.... .+.+.+|||+|+ -.|... ..+...|+.|+++|+.+-.. ..
T Consensus 93 ytqlcqyl~~~~~~vp~gmrVLDLGA~s~kg~APGS~VLr~~~p~g~~VVavDL~~~~s-----------da-------- 153 (344)
T 3r24_A 93 YTQLCQYLNTLTLAVPYNMRVIHFGAGSDKGVAPGTAVLRQWLPTGTLLVDSDLNDFVS-----------DA-------- 153 (344)
T ss_dssp HHHHHHHHTTSCCCCCTTCEEEEESCCCTTSBCHHHHHHHHHSCTTCEEEEEESSCCBC-----------SS--------
T ss_pred HHHHHHHhccccEeecCCCEEEeCCCCCCCCCCCcHHHHHHhCCCCcEEEEeeCccccc-----------CC--------
Confidence 356667775432 346789999996 566631 11222256899999976320 11
Q ss_pred CCceEEcccccC--CCCccEEEEcccc---cccCcch-----H-HHHHHHHHhccCCeEEEE
Q 020710 205 MPKFEVKDLESL--DGKYDTVVCLDVL---IHYPQSK-----A-DGMIAHLASLAEKRLILS 255 (322)
Q Consensus 205 ~~~~~~~d~~~~--~~~fD~V~~~~~l---~~~~~~~-----~-~~~l~~l~~~~~~~~il~ 255 (322)
..++++|.... .++||+|++-+.= -+...+. + +.++.-+.+.+++||-+.
T Consensus 154 -~~~IqGD~~~~~~~~k~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFv 214 (344)
T 3r24_A 154 -DSTLIGDCATVHTANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIA 214 (344)
T ss_dssp -SEEEESCGGGEEESSCEEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEE
T ss_pred -CeEEEccccccccCCCCCEEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEE
Confidence 15689997655 6889999985421 1111111 3 445555555666666443
|
| >1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52 | Back alignment and structure |
|---|
Probab=94.83 E-value=0.12 Score=47.00 Aligned_cols=86 Identities=9% Similarity=0.142 Sum_probs=50.3
Q ss_pred HHHhhhcCCCCCCeEEEECCCcccchHHHHhc---------CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCce
Q 020710 138 MQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ---------GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKF 208 (322)
Q Consensus 138 ~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~---------~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~ 208 (322)
++.....+...+..|+|+|.|.|.++..+.+. ..+++.||+|+...+.=++++.... ++ .+
T Consensus 70 ~~~w~~~g~p~~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~~~---~v-------~W 139 (387)
T 1zkd_A 70 ASVWKAADEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAGIR---NI-------HW 139 (387)
T ss_dssp HHHHHHTTCCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTTCS---SE-------EE
T ss_pred HHHHHHcCCCCCcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHHHHHhcCCC---Ce-------EE
Confidence 33333333234557999999999998877542 3479999999988765444443321 11 33
Q ss_pred EEcccccCCCCccEEEEcccccccCc
Q 020710 209 EVKDLESLDGKYDTVVCLDVLIHYPQ 234 (322)
Q Consensus 209 ~~~d~~~~~~~fD~V~~~~~l~~~~~ 234 (322)
. .++++++...=+|++++++.-+|-
T Consensus 140 ~-~~l~~lp~~~~~viANE~fDAlPv 164 (387)
T 1zkd_A 140 H-DSFEDVPEGPAVILANEYFDVLPI 164 (387)
T ss_dssp E-SSGGGSCCSSEEEEEESSGGGSCC
T ss_pred e-CChhhcCCCCeEEEeccccccCce
Confidence 2 233333323446666666655553
|
| >3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A* | Back alignment and structure |
|---|
Probab=94.78 E-value=0.37 Score=42.73 Aligned_cols=166 Identities=16% Similarity=0.103 Sum_probs=94.5
Q ss_pred CCeEEEECCCccc--chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhh----ccCCCCCCC------CCceEEcccccC
Q 020710 149 GIAVCDAGCGTGS--LAIPLAKQGAIVSASDISAAMVAEARKKAEEELL----ADNGGEAPV------MPKFEVKDLESL 216 (322)
Q Consensus 149 ~~~VLDvGcG~G~--~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~----~~~~~~~~~------~~~~~~~d~~~~ 216 (322)
..+|.=||+|+=. ++..++..|.+|+..|++++.++.+.++..+.-. ..+..-... ++. ...|+.+.
T Consensus 6 ~~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~-~~~~l~~a 84 (319)
T 3ado_A 6 AGDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLIS-SCTNLAEA 84 (319)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEE-EECCHHHH
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhcc-cccchHhH
Confidence 5689999999533 3555667799999999999999888766543211 000000000 001 12233322
Q ss_pred CCCccEEEEcccccccCcc--hHHHHHHHHHhccCCeEEEEECCChhhHHHHHHh--------h-ccCCCCCC-----cc
Q 020710 217 DGKYDTVVCLDVLIHYPQS--KADGMIAHLASLAEKRLILSFAPKTFYYDLLKRV--------G-ELFPGPSK-----AT 280 (322)
Q Consensus 217 ~~~fD~V~~~~~l~~~~~~--~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~--------~-~~~~~~~~-----~~ 280 (322)
-...|+|+ +-++.. ...++++++-++.+++.||..+..++....+... + .+|.+++- ..
T Consensus 85 ~~~ad~Vi-----Eav~E~l~iK~~lf~~l~~~~~~~aIlaSNTSsl~is~ia~~~~~p~r~ig~HffNP~~~m~LVEiv 159 (319)
T 3ado_A 85 VEGVVHIQ-----ECVPENLDLKRKIFAQLDSIVDDRVVLSSSSSCLLPSKLFTGLAHVKQCIVAHPVNPPYYIPLVELV 159 (319)
T ss_dssp TTTEEEEE-----ECCCSCHHHHHHHHHHHHTTCCSSSEEEECCSSCCHHHHHTTCTTGGGEEEEEECSSTTTCCEEEEE
T ss_pred hccCcEEe-----eccccHHHHHHHHHHHHHHHhhhcceeehhhhhccchhhhhhccCCCcEEEecCCCCccccchHHhc
Confidence 34467776 444432 1358999999988888888877665543322211 0 01111000 00
Q ss_pred ccccC---CHHHHHHHHHHCCCEEEEEeeeecceehhhhhhhc
Q 020710 281 RAYLH---AEADVERALQKVGWKIRKRGLITTQFYFARLVEAV 320 (322)
Q Consensus 281 ~~~~~---~~~~~~~~l~~aGf~vv~~~~~~~~~~f~~~~~~~ 320 (322)
.+..- ..+...+++++.|-+.+........|..++++..+
T Consensus 160 ~g~~Ts~~~~~~~~~~~~~~gk~pv~v~kd~pGFi~NRl~~~~ 202 (319)
T 3ado_A 160 PHPETSPATVDRTHALMRKIGQSPVRVLKEIDGFVLNRLQYAI 202 (319)
T ss_dssp ECTTCCHHHHHHHHHHHHHTTCEEEECSSCCTTTTHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHhCCccCCcCCCCCCEeHHHHHHHH
Confidence 00001 34556678889999988776677888888887643
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=94.72 E-value=0.082 Score=51.98 Aligned_cols=129 Identities=21% Similarity=0.159 Sum_probs=75.9
Q ss_pred CCCeEEEECCCcccchHHHHhc------------C--CEEEEEeC---CHHHHHHHHHHhHH-------h--hhccCC-C
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQ------------G--AIVSASDI---SAAMVAEARKKAEE-------E--LLADNG-G 200 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~------------~--~~v~gvD~---s~~~l~~a~~~~~~-------~--~~~~~~-~ 200 (322)
+.-+|||+|-|+|.+.....+. . .+++++|. +.+.++.+-..+.+ . .+...+ +
T Consensus 66 ~~~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 145 (676)
T 3ps9_A 66 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG 145 (676)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSE
T ss_pred CceEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCC
Confidence 3468999999999987765432 1 35899998 87777644332111 0 000000 0
Q ss_pred -----C--CCCCCceEEcccccC--------CCCccEEEEcccccccCcch--HHHHHHHHHhccCCeEEEEECCChhhH
Q 020710 201 -----E--APVMPKFEVKDLESL--------DGKYDTVVCLDVLIHYPQSK--ADGMIAHLASLAEKRLILSFAPKTFYY 263 (322)
Q Consensus 201 -----~--~~~~~~~~~~d~~~~--------~~~fD~V~~~~~l~~~~~~~--~~~~l~~l~~~~~~~~il~~~~~~~~~ 263 (322)
+ ....++...+|+.+. .+.||+|+.-..--.- +++ -..+++.|.+++++++.+....
T Consensus 146 ~~~~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~d~~~~D~f~p~~-np~~w~~~~~~~l~~~~~~g~~~~t~~----- 219 (676)
T 3ps9_A 146 CHRLLLDAGRVTLDLWFGDINELTSQLDDSLNQKVDAWFLDGFAPAK-NPDMWTQNLFNAMARLARPGGTLATFT----- 219 (676)
T ss_dssp EEEEEEGGGTEEEEEEESCHHHHGGGBCGGGTTCEEEEEECCSCGGG-CGGGSCHHHHHHHHHHEEEEEEEEESC-----
T ss_pred ceEEEecCCcEEEEEecCCHHHHHHhcccccCCcccEEEECCCCCcC-ChhhhhHHHHHHHHHHhCCCCEEEecc-----
Confidence 0 001124556665432 3679999874422111 222 2588999999888777665311
Q ss_pred HHHHHhhccCCCCCCccccccCCHHHHHHHHHHCCCEEEEE
Q 020710 264 DLLKRVGELFPGPSKATRAYLHAEADVERALQKVGWKIRKR 304 (322)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~vv~~ 304 (322)
....+++.|.++||.+...
T Consensus 220 ----------------------~~~~vr~~L~~aGf~v~~~ 238 (676)
T 3ps9_A 220 ----------------------SAGFVRRGLQDAGFTMQKR 238 (676)
T ss_dssp ----------------------CCHHHHHHHHHHTCEEEEE
T ss_pred ----------------------CcHHHHHHHHhCCeEEEec
Confidence 1247888999999988763
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=94.72 E-value=0.078 Score=52.30 Aligned_cols=130 Identities=16% Similarity=0.111 Sum_probs=76.2
Q ss_pred CCCeEEEECCCcccchHHHHhc------------C--CEEEEEeC---CHHHHHHHHHHhH-----------Hh-----h
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQ------------G--AIVSASDI---SAAMVAEARKKAE-----------EE-----L 194 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~------------~--~~v~gvD~---s~~~l~~a~~~~~-----------~~-----~ 194 (322)
+.-+|+|+|.|+|.+...+.+. . .+++.+|. +.+.+..+-+.+. .. +
T Consensus 58 ~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 137 (689)
T 3pvc_A 58 QSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAG 137 (689)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSE
T ss_pred CceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCC
Confidence 3569999999999988776542 1 46899998 5555544322111 10 0
Q ss_pred hccCCCC--CCCCCceEEccccc----C----CCCccEEEEcccccc-cCcchHHHHHHHHHhccCCeEEEEECCChhhH
Q 020710 195 LADNGGE--APVMPKFEVKDLES----L----DGKYDTVVCLDVLIH-YPQSKADGMIAHLASLAEKRLILSFAPKTFYY 263 (322)
Q Consensus 195 ~~~~~~~--~~~~~~~~~~d~~~----~----~~~fD~V~~~~~l~~-~~~~~~~~~l~~l~~~~~~~~il~~~~~~~~~ 263 (322)
.. |..+ ....+++..+|+.+ + ++.+|.++.-..--. -|+---..++..|.++.++++.+....
T Consensus 138 ~~-r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~flD~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t~~----- 211 (689)
T 3pvc_A 138 CH-RILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLDGFAPAKNPDMWNEQLFNAMARMTRPGGTFSTFT----- 211 (689)
T ss_dssp EE-EEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEECSSCC--CCTTCSHHHHHHHHHHEEEEEEEEESC-----
T ss_pred ce-EEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEECCCCCCCChhhhhHHHHHHHHHHhCCCCEEEecc-----
Confidence 00 0000 01123667777643 2 367999987442111 111112578888888887777664311
Q ss_pred HHHHHhhccCCCCCCccccccCCHHHHHHHHHHCCCEEEEEe
Q 020710 264 DLLKRVGELFPGPSKATRAYLHAEADVERALQKVGWKIRKRG 305 (322)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~vv~~~ 305 (322)
....+++.|.++||.+....
T Consensus 212 ----------------------~~~~vr~~l~~aGf~~~~~~ 231 (689)
T 3pvc_A 212 ----------------------AAGFVRRGLQQAGFNVTKVK 231 (689)
T ss_dssp ----------------------CCHHHHHHHHHTTCEEEEEE
T ss_pred ----------------------CcHHHHHHHHhCCeEEEecc
Confidence 12478899999999987743
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=94.50 E-value=0.36 Score=36.96 Aligned_cols=63 Identities=16% Similarity=0.052 Sum_probs=43.7
Q ss_pred CCeEEEECCCc-ccc-hHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-------CCC
Q 020710 149 GIAVCDAGCGT-GSL-AIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------DGK 219 (322)
Q Consensus 149 ~~~VLDvGcG~-G~~-~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------~~~ 219 (322)
..+|+=+|||. |.. +..|.+.|.+|+++|.+++.++.+++ .+. .++.+|..+. -..
T Consensus 7 ~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~----~g~-----------~~i~gd~~~~~~l~~a~i~~ 71 (140)
T 3fwz_A 7 CNHALLVGYGRVGSLLGEKLLASDIPLVVIETSRTRVDELRE----RGV-----------RAVLGNAANEEIMQLAHLEC 71 (140)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHH----TTC-----------EEEESCTTSHHHHHHTTGGG
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH----cCC-----------CEEECCCCCHHHHHhcCccc
Confidence 46799999974 332 33444559999999999998877653 221 6778887653 257
Q ss_pred ccEEEEc
Q 020710 220 YDTVVCL 226 (322)
Q Consensus 220 fD~V~~~ 226 (322)
+|+|++.
T Consensus 72 ad~vi~~ 78 (140)
T 3fwz_A 72 AKWLILT 78 (140)
T ss_dssp CSEEEEC
T ss_pred CCEEEEE
Confidence 8988854
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=94.40 E-value=1.9 Score=42.31 Aligned_cols=153 Identities=14% Similarity=0.154 Sum_probs=86.7
Q ss_pred CCCeEEEECCCcccchHHHHhc----------CCEEEEEeCCHHHHHHHHHHhHHhhh-c--------cCC-------CC
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQ----------GAIVSASDISAAMVAEARKKAEEELL-A--------DNG-------GE 201 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~----------~~~v~gvD~s~~~l~~a~~~~~~~~~-~--------~~~-------~~ 201 (322)
+...|+-+|||.-.....|... +..++=||. |+.++.=++.+.+... . ..+ ..
T Consensus 107 ~~~qvV~LGaGlDtr~~Rl~~~~~~~~~~~~~~~~~~EvD~-p~v~~~K~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~ 185 (695)
T 2zwa_A 107 KKIVVVNLGCGYDPLPFQLLDTNNIQSQQYHDRVSFIDIDY-SDLLKIKIELIKTIPELSKIIGLSEDKDYVDDSNVDFL 185 (695)
T ss_dssp SEEEEEEETCTTCCHHHHHHCTTCGGGGGGSSSEEEEEEEC-HHHHHHHHHHHHHCHHHHHHTTCCSSCSSCSCTTCCCE
T ss_pred CCcEEEEcccccCcceeeeeccCcccccccCCCCEEEECcc-HHHHHHHHHHHHcChHHHHhhccccccccccccccccc
Confidence 3567999999999988888654 334555665 4455444444432210 0 000 00
Q ss_pred CCCCCceEEcccccC--------CCC------ccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEEC---C----Ch
Q 020710 202 APVMPKFEVKDLESL--------DGK------YDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFA---P----KT 260 (322)
Q Consensus 202 ~~~~~~~~~~d~~~~--------~~~------fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~---~----~~ 260 (322)
+-.+..++..|+.+. ... -=++++-.+|.+++.+...++++.+.++ .++.++.+. + +.
T Consensus 186 ~s~~y~~v~~Dl~~~~~~~~~l~~~g~~d~~~ptl~i~Egvl~Yl~~~~~~~ll~~~~~~-~~~~~~~~e~~~~~~~~d~ 264 (695)
T 2zwa_A 186 TTPKYLARPCDLNDSKMFSTLLNECQLYDPNVVKVFVAEVSLAYMKPERSDSIIEATSKM-ENSHFIILEQLIPKGPFEP 264 (695)
T ss_dssp ECSSEEEEECCTTCHHHHHHHHHHTTTTCTTEEEEEEEESSGGGSCHHHHHHHHHHHHTS-SSEEEEEEEECCTTCTTSH
T ss_pred cCCCeeEEeCcCCCcHHHHHHHhhccCCCCCCCEEEeeeeEEEEcCHHHHHHHHHHHhhC-CCceEEEEEeecCCCCCCh
Confidence 001226777888663 111 2245666789999988889999999876 455555543 2 22
Q ss_pred hhHHHHHHhhccCCCCCCccccccCCHHHHHHHHHHCCCEEEEE
Q 020710 261 FYYDLLKRVGELFPGPSKATRAYLHAEADVERALQKVGWKIRKR 304 (322)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~vv~~ 304 (322)
+...+.+.+... .......+ .+.+.++.++.|.+.||+.+..
T Consensus 265 f~~~m~~~~~~~-g~~l~~~~-~~~~~~~~~~~~~~~Gw~~v~~ 306 (695)
T 2zwa_A 265 FSKQMLAHFKRN-DSPLQSVL-KYNTIESQVQRFNKLGFAYVNV 306 (695)
T ss_dssp HHHHHHHHHHHT-TCCCCGGG-TCCSHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHHHc-CCCCCccc-cCCCHHHHHHHHHHCCCCCcce
Confidence 222222322211 00111112 2347999999999999986653
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=94.33 E-value=0.44 Score=41.30 Aligned_cols=162 Identities=18% Similarity=0.139 Sum_probs=85.2
Q ss_pred CeEEEECCCc--ccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhc---c--CCCCC-----CCCCceEEcccccCC
Q 020710 150 IAVCDAGCGT--GSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLA---D--NGGEA-----PVMPKFEVKDLESLD 217 (322)
Q Consensus 150 ~~VLDvGcG~--G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~---~--~~~~~-----~~~~~~~~~d~~~~~ 217 (322)
.+|.=||+|+ ..++..++..|.+|+..|.+++.++.+.+........ . +.... ... -....|+.+.-
T Consensus 5 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~-i~~~~~~~~~~ 83 (283)
T 4e12_A 5 TNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGG-IRYSDDLAQAV 83 (283)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHH-CEEESCHHHHT
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcC-eEEeCCHHHHh
Confidence 5788889885 2234555667999999999999988887653221000 0 00000 000 01233443333
Q ss_pred CCccEEEEcccccccCcc--hHHHHHHHHHhccCCeEEEEECCChhhHH-HHHHhhc--------cCCCCCCc-----cc
Q 020710 218 GKYDTVVCLDVLIHYPQS--KADGMIAHLASLAEKRLILSFAPKTFYYD-LLKRVGE--------LFPGPSKA-----TR 281 (322)
Q Consensus 218 ~~fD~V~~~~~l~~~~~~--~~~~~l~~l~~~~~~~~il~~~~~~~~~~-~~~~~~~--------~~~~~~~~-----~~ 281 (322)
...|+|+. .++.. ....+++++....+++.++..+..+.... +...... ++...... ..
T Consensus 84 ~~aDlVi~-----av~~~~~~~~~v~~~l~~~~~~~~il~s~tS~~~~~~la~~~~~~~~~ig~h~~~p~~~~~lvevv~ 158 (283)
T 4e12_A 84 KDADLVIE-----AVPESLDLKRDIYTKLGELAPAKTIFATNSSTLLPSDLVGYTGRGDKFLALHFANHVWVNNTAEVMG 158 (283)
T ss_dssp TTCSEEEE-----CCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHHHHHHSCGGGEEEEEECSSTTTSCEEEEEE
T ss_pred ccCCEEEE-----eccCcHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCcceEEEccCCCcccCceEEEEe
Confidence 56899984 45543 34677888887766666555433332222 2222111 11110000 00
Q ss_pred cccC---CHHHHHHHHHHCCCEEEEEeeeecceehhhhh
Q 020710 282 AYLH---AEADVERALQKVGWKIRKRGLITTQFYFARLV 317 (322)
Q Consensus 282 ~~~~---~~~~~~~~l~~aGf~vv~~~~~~~~~~f~~~~ 317 (322)
...- ..+.+.++++..|.+.+.+......|..++++
T Consensus 159 ~~~t~~~~~~~~~~l~~~~g~~~v~v~~~~~g~i~nr~~ 197 (283)
T 4e12_A 159 TTKTDPEVYQQVVEFASAIGMVPIELKKEKAGYVLNSLL 197 (283)
T ss_dssp CTTSCHHHHHHHHHHHHHTTCEEEECSSCCTTTTHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEecCCCCEEehHHH
Confidence 0001 23456678999999988875555666665554
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=94.26 E-value=0.59 Score=35.13 Aligned_cols=64 Identities=22% Similarity=0.244 Sum_probs=39.1
Q ss_pred CCeEEEECCCc-cc-chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-------CCC
Q 020710 149 GIAVCDAGCGT-GS-LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------DGK 219 (322)
Q Consensus 149 ~~~VLDvGcG~-G~-~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------~~~ 219 (322)
+.+|+=+|||. |. ++..|.+.|.+|+.+|.+++.++..++.. +. .++.+|..+. ...
T Consensus 4 ~m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~~---~~-----------~~~~~d~~~~~~l~~~~~~~ 69 (140)
T 1lss_A 4 GMYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEI---DA-----------LVINGDCTKIKTLEDAGIED 69 (140)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC---SS-----------EEEESCTTSHHHHHHTTTTT
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhc---Cc-----------EEEEcCCCCHHHHHHcCccc
Confidence 46899998853 22 22334455889999999987765544321 11 4555665332 356
Q ss_pred ccEEEEc
Q 020710 220 YDTVVCL 226 (322)
Q Consensus 220 fD~V~~~ 226 (322)
+|+|+.+
T Consensus 70 ~d~vi~~ 76 (140)
T 1lss_A 70 ADMYIAV 76 (140)
T ss_dssp CSEEEEC
T ss_pred CCEEEEe
Confidence 8999875
|
| >2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56 | Back alignment and structure |
|---|
Probab=94.23 E-value=0.072 Score=49.13 Aligned_cols=46 Identities=13% Similarity=0.084 Sum_probs=40.5
Q ss_pred CCCCeEEEECCCcccchHHHH-hc-C--CEEEEEeCCHHHHHHHHHHhHH
Q 020710 147 LKGIAVCDAGCGTGSLAIPLA-KQ-G--AIVSASDISAAMVAEARKKAEE 192 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la-~~-~--~~v~gvD~s~~~l~~a~~~~~~ 192 (322)
.++..|+||||+.|.++..++ +. + .+|+++|++|...+..+++...
T Consensus 225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~ 274 (409)
T 2py6_A 225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRR 274 (409)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHH
T ss_pred CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHh
Confidence 467899999999999999888 43 2 6899999999999999998876
|
| >3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A* | Back alignment and structure |
|---|
Probab=93.88 E-value=0.46 Score=48.58 Aligned_cols=45 Identities=16% Similarity=0.127 Sum_probs=38.4
Q ss_pred CCCeEEEECCCcccchHHHHhcCC-E-EEEEeCCHHHHHHHHHHhHH
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQGA-I-VSASDISAAMVAEARKKAEE 192 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~~~-~-v~gvD~s~~~l~~a~~~~~~ 192 (322)
...+++|+-||.|.++..|...|. + +.++|+++.+++..+.++..
T Consensus 539 ~~l~~iDLFaG~GGlslGl~~AG~~~vv~avEid~~A~~ty~~N~p~ 585 (1002)
T 3swr_A 539 PKLRTLDVFSGCGGLSEGFHQAGISDTLWAIEMWDPAAQAFRLNNPG 585 (1002)
T ss_dssp CCEEEEEESCTTSHHHHHHHHHTSEEEEEEECSSHHHHHHHHHHCTT
T ss_pred CCCeEEEeccCccHHHHHHHHCCCCceEEEEECCHHHHHHHHHhCCC
Confidence 456899999999999999988897 4 78999999999888777643
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=93.77 E-value=0.23 Score=44.83 Aligned_cols=45 Identities=29% Similarity=0.306 Sum_probs=37.0
Q ss_pred CCCCCCeEEEECCCc-ccchHHHHhc-CC-EEEEEeCCHHHHHHHHHH
Q 020710 145 GSLKGIAVCDAGCGT-GSLAIPLAKQ-GA-IVSASDISAAMVAEARKK 189 (322)
Q Consensus 145 ~~~~~~~VLDvGcG~-G~~~~~la~~-~~-~v~gvD~s~~~l~~a~~~ 189 (322)
...++.+||-+|||. |.++..+++. |+ +|+++|.+++.++.+++.
T Consensus 187 ~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~l 234 (371)
T 1f8f_A 187 KVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQL 234 (371)
T ss_dssp CCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc
Confidence 345788999999986 7888888876 88 699999999988887654
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=93.31 E-value=0.45 Score=40.17 Aligned_cols=73 Identities=23% Similarity=0.195 Sum_probs=54.1
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
.+++||=.|++.|. ++..|++.|++|+.+|.+++.++...+.+...+... .++.+|+.+.
T Consensus 8 ~~k~vlITGas~giG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~---------~~~~~D~~~~~~~~~~~~ 78 (253)
T 3qiv_A 8 ENKVGIVTGSGGGIGQAYAEALAREGAAVVVADINAEAAEAVAKQIVADGGTA---------ISVAVDVSDPESAKAMAD 78 (253)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEE---------EEEECCTTSHHHHHHHHH
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCcE---------EEEEccCCCHHHHHHHHH
Confidence 46789988887653 455566679999999999988877776665543322 7888898774
Q ss_pred -----CCCccEEEEcccc
Q 020710 217 -----DGKYDTVVCLDVL 229 (322)
Q Consensus 217 -----~~~fD~V~~~~~l 229 (322)
-+..|+++.+..+
T Consensus 79 ~~~~~~g~id~li~~Ag~ 96 (253)
T 3qiv_A 79 RTLAEFGGIDYLVNNAAI 96 (253)
T ss_dssp HHHHHHSCCCEEEECCCC
T ss_pred HHHHHcCCCCEEEECCCc
Confidence 2589999988765
|
| >4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A* | Back alignment and structure |
|---|
Probab=93.19 E-value=0.84 Score=45.63 Aligned_cols=44 Identities=14% Similarity=0.107 Sum_probs=37.1
Q ss_pred CCCeEEEECCCcccchHHHHhcC------CE-EEEEeCCHHHHHHHHHHhH
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQG------AI-VSASDISAAMVAEARKKAE 191 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~~------~~-v~gvD~s~~~l~~a~~~~~ 191 (322)
+..+|+|+-||-|.++.-|...| .+ +.++|+++.+++.-+.++.
T Consensus 211 k~ltvIDLFAG~GGls~Gfe~AG~~~~~~f~vv~AvE~d~~A~~Ty~~Nhp 261 (784)
T 4ft4_B 211 RTATLLDLYSGCGGMSTGLCLGAALSGLKLETRWAVDFNSFACQSLKYNHP 261 (784)
T ss_dssp EEEEEEEETCTTSHHHHHHHHHHHHHTEEEEEEEEEESCHHHHHHHHHHCT
T ss_pred CCCeEEEeCcCccHHHHHHHHhCcccCCceeEEEEEeCCHHHHHHHHHHCC
Confidence 45689999999999999987765 44 7899999999998887754
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=93.07 E-value=0.37 Score=42.88 Aligned_cols=44 Identities=34% Similarity=0.435 Sum_probs=36.6
Q ss_pred CCCCCCeEEEECCCc-ccchHHHHhc-CCEEEEEeCCHHHHHHHHH
Q 020710 145 GSLKGIAVCDAGCGT-GSLAIPLAKQ-GAIVSASDISAAMVAEARK 188 (322)
Q Consensus 145 ~~~~~~~VLDvGcG~-G~~~~~la~~-~~~v~gvD~s~~~l~~a~~ 188 (322)
...++.+||-.|+|. |..+..+++. |++|+++|.+++.++.+++
T Consensus 163 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~ 208 (340)
T 3s2e_A 163 DTRPGQWVVISGIGGLGHVAVQYARAMGLRVAAVDIDDAKLNLARR 208 (340)
T ss_dssp TCCTTSEEEEECCSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH
Confidence 345788999999975 8888888876 9999999999998887765
|
| >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=92.89 E-value=0.71 Score=38.73 Aligned_cols=74 Identities=19% Similarity=0.175 Sum_probs=53.7
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
.++++|=.|++.|. ++..|+++|++|+.++.++..++...+.+...+... .++..|+.+.
T Consensus 4 ~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~---------~~~~~D~~~~~~~~~~~~ 74 (247)
T 3lyl_A 4 NEKVALVTGASRGIGFEVAHALASKGATVVGTATSQASAEKFENSMKEKGFKA---------RGLVLNISDIESIQNFFA 74 (247)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTTCCE---------EEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCce---------EEEEecCCCHHHHHHHHH
Confidence 36778888876653 355566679999999999988877776665544322 7888898764
Q ss_pred -----CCCccEEEEccccc
Q 020710 217 -----DGKYDTVVCLDVLI 230 (322)
Q Consensus 217 -----~~~fD~V~~~~~l~ 230 (322)
.+..|+++.+..+.
T Consensus 75 ~~~~~~~~id~li~~Ag~~ 93 (247)
T 3lyl_A 75 EIKAENLAIDILVNNAGIT 93 (247)
T ss_dssp HHHHTTCCCSEEEECCCCC
T ss_pred HHHHHcCCCCEEEECCCCC
Confidence 35789999887654
|
| >3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=92.83 E-value=0.93 Score=38.59 Aligned_cols=73 Identities=19% Similarity=0.133 Sum_probs=54.2
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
.++++|=.|++.|. .+..|++.|++|+.+|.+++.++...+.+...+... .++.+|+.+.
T Consensus 10 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~---------~~~~~Dv~~~~~v~~~~~ 80 (264)
T 3ucx_A 10 TDKVVVISGVGPALGTTLARRCAEQGADLVLAARTVERLEDVAKQVTDTGRRA---------LSVGTDITDDAQVAHLVD 80 (264)
T ss_dssp TTCEEEEESCCTTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCE---------EEEECCTTCHHHHHHHHH
T ss_pred CCcEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHHhcCCcE---------EEEEcCCCCHHHHHHHHH
Confidence 46789988887664 355666779999999999988877776665543322 7888898774
Q ss_pred -----CCCccEEEEcccc
Q 020710 217 -----DGKYDTVVCLDVL 229 (322)
Q Consensus 217 -----~~~fD~V~~~~~l 229 (322)
-+..|+++.+...
T Consensus 81 ~~~~~~g~id~lv~nAg~ 98 (264)
T 3ucx_A 81 ETMKAYGRVDVVINNAFR 98 (264)
T ss_dssp HHHHHTSCCSEEEECCCS
T ss_pred HHHHHcCCCcEEEECCCC
Confidence 3689999987644
|
| >3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5} | Back alignment and structure |
|---|
Probab=92.53 E-value=0.58 Score=39.84 Aligned_cols=73 Identities=18% Similarity=0.161 Sum_probs=53.2
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
.+++||=.|++.|. ++..|++.|++|+.+|.+++.++...+.+...+... .++.+|+.+.
T Consensus 28 ~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~---------~~~~~D~~~~~~v~~~~~ 98 (262)
T 3rkr_A 28 SGQVAVVTGASRGIGAAIARKLGSLGARVVLTARDVEKLRAVEREIVAAGGEA---------ESHACDLSHSDAIAAFAT 98 (262)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEE---------EEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhCCce---------eEEEecCCCHHHHHHHHH
Confidence 46788888876553 344555669999999999988877776665544332 7888898764
Q ss_pred -----CCCccEEEEcccc
Q 020710 217 -----DGKYDTVVCLDVL 229 (322)
Q Consensus 217 -----~~~fD~V~~~~~l 229 (322)
.+..|+++.+..+
T Consensus 99 ~~~~~~g~id~lv~~Ag~ 116 (262)
T 3rkr_A 99 GVLAAHGRCDVLVNNAGV 116 (262)
T ss_dssp HHHHHHSCCSEEEECCCC
T ss_pred HHHHhcCCCCEEEECCCc
Confidence 2579999988765
|
| >4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A* | Back alignment and structure |
|---|
Probab=92.39 E-value=0.37 Score=44.43 Aligned_cols=54 Identities=30% Similarity=0.377 Sum_probs=39.4
Q ss_pred HHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc----C---CEEEEEeCCHHHHHHHHHHhHH
Q 020710 136 NTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ----G---AIVSASDISAAMVAEARKKAEE 192 (322)
Q Consensus 136 ~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~----~---~~v~gvD~s~~~l~~a~~~~~~ 192 (322)
.+.+.+...+ ..+|+|+|.|+|.++..+.+. + .+++.||+|+.+.+.=++++..
T Consensus 128 ~~~~~~~~~g---~~~ivE~GaG~GtLa~DiL~~l~~~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~ 188 (432)
T 4f3n_A 128 PVAQALDASG---TRRVMEFGAGTGKLAAGLLTALAALGVELDEYAIVDLSGELRARQRETLGA 188 (432)
T ss_dssp HHHHHHHHHT---CCEEEEESCTTSHHHHHHHHHHHHTTCCCSEEEEECTTSSSHHHHHHHHHH
T ss_pred HHHHHHHhcC---CCeEEEeCCCccHHHHHHHHHHHhcCCCCceEEEEEcCHHHHHHHHHHHhc
Confidence 3444555442 479999999999988777643 2 4799999999888776666654
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=92.37 E-value=0.22 Score=44.57 Aligned_cols=68 Identities=26% Similarity=0.236 Sum_probs=48.1
Q ss_pred CCCCCCeEEEECCCc-ccchHHHHhc-CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccCCCCccE
Q 020710 145 GSLKGIAVCDAGCGT-GSLAIPLAKQ-GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESLDGKYDT 222 (322)
Q Consensus 145 ~~~~~~~VLDvGcG~-G~~~~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~fD~ 222 (322)
...++.+||-+|+|. |..+..+++. |++|+++|.+++.++.+++ .+.+ ..+ .|...+...+|+
T Consensus 173 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~----lGa~----------~v~-~~~~~~~~~~D~ 237 (348)
T 3two_A 173 KVTKGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQDALS----MGVK----------HFY-TDPKQCKEELDF 237 (348)
T ss_dssp TCCTTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSTTHHHHHH----TTCS----------EEE-SSGGGCCSCEEE
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHh----cCCC----------eec-CCHHHHhcCCCE
Confidence 346789999999975 7777777776 8999999999988887754 2322 222 343344447999
Q ss_pred EEEcc
Q 020710 223 VVCLD 227 (322)
Q Consensus 223 V~~~~ 227 (322)
|+-+-
T Consensus 238 vid~~ 242 (348)
T 3two_A 238 IISTI 242 (348)
T ss_dssp EEECC
T ss_pred EEECC
Confidence 98543
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=92.30 E-value=0.48 Score=40.55 Aligned_cols=73 Identities=16% Similarity=0.100 Sum_probs=56.9
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
+++.+|=-|++.|. .+..|++.|++|+.+|.+++.++...+.+...+... .++..|+.+.
T Consensus 6 ~gKvalVTGas~GIG~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~~i~~~g~~~---------~~~~~Dvt~~~~v~~~~~ 76 (254)
T 4fn4_A 6 KNKVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQELRGMGKEV---------LGVKADVSKKKDVEEFVR 76 (254)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCE---------EEEECCTTSHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCcE---------EEEEccCCCHHHHHHHHH
Confidence 57888888888776 456667779999999999999888877776655432 7888998775
Q ss_pred -----CCCccEEEEcccc
Q 020710 217 -----DGKYDTVVCLDVL 229 (322)
Q Consensus 217 -----~~~fD~V~~~~~l 229 (322)
-++.|+++.+..+
T Consensus 77 ~~~~~~G~iDiLVNNAGi 94 (254)
T 4fn4_A 77 RTFETYSRIDVLCNNAGI 94 (254)
T ss_dssp HHHHHHSCCCEEEECCCC
T ss_pred HHHHHcCCCCEEEECCcc
Confidence 3789999987654
|
| >4dkj_A Cytosine-specific methyltransferase; CG-specificity, DNA intercalation, CPG sequence, cytosine C5 methylation; HET: DNA C37 5CM SAH; 2.15A {Mycoplasma penetrans} | Back alignment and structure |
|---|
Probab=92.27 E-value=2.4 Score=38.82 Aligned_cols=44 Identities=16% Similarity=0.042 Sum_probs=36.5
Q ss_pred CCeEEEECCCcccchHHHHhcCC---E----EEEEeCCHHHHHHHHHHhHH
Q 020710 149 GIAVCDAGCGTGSLAIPLAKQGA---I----VSASDISAAMVAEARKKAEE 192 (322)
Q Consensus 149 ~~~VLDvGcG~G~~~~~la~~~~---~----v~gvD~s~~~l~~a~~~~~~ 192 (322)
..+|+|+-||.|.+...|.+.|. - |.++|+++.+++.-+.+...
T Consensus 10 ~lrvldLFsGiGG~~~Gl~~aG~~~~~~~~~v~avEid~~A~~ty~~n~~~ 60 (403)
T 4dkj_A 10 VIKVFEAFAGIGSQFKALKNIARSKNWEIQHSGMVEWFVDAIVSYVAIHSK 60 (403)
T ss_dssp EEEEEEETCTTCHHHHHHHHHHHHHTEEEEEEEEECCBHHHHHHHHHHHCS
T ss_pred cceEEEEecCcCHHHHHHHHhCCccccceeeEEEEecCHHHHHHHHHHcCC
Confidence 46899999999999999987762 2 77899999999888777653
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=92.27 E-value=0.72 Score=40.25 Aligned_cols=74 Identities=23% Similarity=0.247 Sum_probs=55.2
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
.+++||=.|++.|. ++..|++.|++|+.+|.++..++...+.+...+... .++..|+.+.
T Consensus 30 ~gk~vlVTGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~---------~~~~~Dv~d~~~v~~~~~ 100 (301)
T 3tjr_A 30 DGRAAVVTGGASGIGLATATEFARRGARLVLSDVDQPALEQAVNGLRGQGFDA---------HGVVCDVRHLDEMVRLAD 100 (301)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCE---------EEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCce---------EEEEccCCCHHHHHHHHH
Confidence 46789999988664 345566679999999999988887777666544322 7888898774
Q ss_pred -----CCCccEEEEccccc
Q 020710 217 -----DGKYDTVVCLDVLI 230 (322)
Q Consensus 217 -----~~~fD~V~~~~~l~ 230 (322)
.+..|+++.+..+.
T Consensus 101 ~~~~~~g~id~lvnnAg~~ 119 (301)
T 3tjr_A 101 EAFRLLGGVDVVFSNAGIV 119 (301)
T ss_dssp HHHHHHSSCSEEEECCCCC
T ss_pred HHHHhCCCCCEEEECCCcC
Confidence 25899999887654
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=91.90 E-value=1.6 Score=35.83 Aligned_cols=99 Identities=22% Similarity=0.159 Sum_probs=59.7
Q ss_pred eEEEECCCcccchHHHH----hcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-------CCC
Q 020710 151 AVCDAGCGTGSLAIPLA----KQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------DGK 219 (322)
Q Consensus 151 ~VLDvGcG~G~~~~~la----~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------~~~ 219 (322)
+|+=+|+ |.++..++ +.|.+|+.+|.+++.++...+.. +. .++.+|..+. -..
T Consensus 2 ~iiIiG~--G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~~---~~-----------~~i~gd~~~~~~l~~a~i~~ 65 (218)
T 3l4b_C 2 KVIIIGG--ETTAYYLARSMLSRKYGVVIINKDRELCEEFAKKL---KA-----------TIIHGDGSHKEILRDAEVSK 65 (218)
T ss_dssp CEEEECC--HHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHS---SS-----------EEEESCTTSHHHHHHHTCCT
T ss_pred EEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHc---CC-----------eEEEcCCCCHHHHHhcCccc
Confidence 5677776 55555554 44899999999998776544321 11 6788887664 357
Q ss_pred ccEEEEcccccccCcchHHHHHHHHHh-ccCCeEEEEECCChhhHHHHHHhh
Q 020710 220 YDTVVCLDVLIHYPQSKADGMIAHLAS-LAEKRLILSFAPKTFYYDLLKRVG 270 (322)
Q Consensus 220 fD~V~~~~~l~~~~~~~~~~~l~~l~~-~~~~~~il~~~~~~~~~~~~~~~~ 270 (322)
+|+|++. .+++....++..+.+ +.+..-++....+..+...+..++
T Consensus 66 ad~vi~~-----~~~d~~n~~~~~~a~~~~~~~~iia~~~~~~~~~~l~~~G 112 (218)
T 3l4b_C 66 NDVVVIL-----TPRDEVNLFIAQLVMKDFGVKRVVSLVNDPGNMEIFKKMG 112 (218)
T ss_dssp TCEEEEC-----CSCHHHHHHHHHHHHHTSCCCEEEECCCSGGGHHHHHHHT
T ss_pred CCEEEEe-----cCCcHHHHHHHHHHHHHcCCCeEEEEEeCcchHHHHHHCC
Confidence 8999864 344444455555444 345555555544444444554443
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=91.87 E-value=1 Score=40.84 Aligned_cols=44 Identities=36% Similarity=0.468 Sum_probs=36.3
Q ss_pred CCCCCCeEEEECCCc-ccchHHHHhc-CC-EEEEEeCCHHHHHHHHH
Q 020710 145 GSLKGIAVCDAGCGT-GSLAIPLAKQ-GA-IVSASDISAAMVAEARK 188 (322)
Q Consensus 145 ~~~~~~~VLDvGcG~-G~~~~~la~~-~~-~v~gvD~s~~~l~~a~~ 188 (322)
+..++.+||-+|||. |.++..+++. |+ +|+++|.+++.++.+++
T Consensus 182 ~~~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~ 228 (398)
T 1kol_A 182 GVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKA 228 (398)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHH
Confidence 345788999999875 7888888876 88 79999999998888864
|
| >3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=91.83 E-value=2.5 Score=36.63 Aligned_cols=74 Identities=26% Similarity=0.282 Sum_probs=52.1
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCC------------HHHHHHHHHHhHHhhhccCCCCCCCCCceEEcc
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDIS------------AAMVAEARKKAEEELLADNGGEAPVMPKFEVKD 212 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s------------~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d 212 (322)
.++++|=.|++.|. .+..|++.|++|+.+|.+ ++.++...+.+...+.. +.++..|
T Consensus 27 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~D 97 (299)
T 3t7c_A 27 EGKVAFITGAARGQGRSHAITLAREGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALGRR---------IIASQVD 97 (299)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTTCC---------EEEEECC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEecccccccccccccCHHHHHHHHHHHHhcCCc---------eEEEECC
Confidence 46789999988764 355666779999999987 66666555555443322 2788889
Q ss_pred cccC-------------CCCccEEEEccccc
Q 020710 213 LESL-------------DGKYDTVVCLDVLI 230 (322)
Q Consensus 213 ~~~~-------------~~~fD~V~~~~~l~ 230 (322)
+.+. -+..|+++.+..+.
T Consensus 98 v~~~~~v~~~~~~~~~~~g~iD~lv~nAg~~ 128 (299)
T 3t7c_A 98 VRDFDAMQAAVDDGVTQLGRLDIVLANAALA 128 (299)
T ss_dssp TTCHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred CCCHHHHHHHHHHHHHHhCCCCEEEECCCCC
Confidence 8764 26899999876643
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=91.82 E-value=0.51 Score=40.37 Aligned_cols=75 Identities=21% Similarity=0.139 Sum_probs=56.2
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
+++.+|=-|++.|. .+..|++.|++|+.+|.+++.++...+.+.+.+... .++.+|+.+.
T Consensus 8 ~gKvalVTGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~l~~~g~~~---------~~~~~Dv~~~~~v~~~~~ 78 (255)
T 4g81_D 8 TGKTALVTGSARGLGFAYAEGLAAAGARVILNDIRATLLAESVDTLTRKGYDA---------HGVAFDVTDELAIEAAFS 78 (255)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTTCCE---------EECCCCTTCHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcE---------EEEEeeCCCHHHHHHHHH
Confidence 57788888877765 356667779999999999998888777776655332 6778887664
Q ss_pred -----CCCccEEEEcccccc
Q 020710 217 -----DGKYDTVVCLDVLIH 231 (322)
Q Consensus 217 -----~~~fD~V~~~~~l~~ 231 (322)
-++.|+++.+..+.+
T Consensus 79 ~~~~~~G~iDiLVNNAG~~~ 98 (255)
T 4g81_D 79 KLDAEGIHVDILINNAGIQY 98 (255)
T ss_dssp HHHHTTCCCCEEEECCCCCC
T ss_pred HHHHHCCCCcEEEECCCCCC
Confidence 478999998766544
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=91.77 E-value=1.9 Score=33.21 Aligned_cols=93 Identities=10% Similarity=0.048 Sum_probs=51.6
Q ss_pred CCeEEEECCCcccchHHHH----hcCCEEEEEeCC-HHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-------
Q 020710 149 GIAVCDAGCGTGSLAIPLA----KQGAIVSASDIS-AAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL------- 216 (322)
Q Consensus 149 ~~~VLDvGcG~G~~~~~la----~~~~~v~gvD~s-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~------- 216 (322)
..+|+=+|| |..+..++ +.|.+|+.+|.+ ++.++...+... .+ +.++.+|..+.
T Consensus 3 ~~~vlI~G~--G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~~-~~-----------~~~i~gd~~~~~~l~~a~ 68 (153)
T 1id1_A 3 KDHFIVCGH--SILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLG-DN-----------ADVIPGDSNDSSVLKKAG 68 (153)
T ss_dssp CSCEEEECC--SHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHC-TT-----------CEEEESCTTSHHHHHHHT
T ss_pred CCcEEEECC--CHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhhc-CC-----------CeEEEcCCCCHHHHHHcC
Confidence 457888887 45554444 458999999997 454443332221 11 17888887653
Q ss_pred CCCccEEEEcccccccCcchHHHHHHHHHhcc-CCeEEEEECCCh
Q 020710 217 DGKYDTVVCLDVLIHYPQSKADGMIAHLASLA-EKRLILSFAPKT 260 (322)
Q Consensus 217 ~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~-~~~~il~~~~~~ 260 (322)
-...|+|++.. ++++....+..+.+.+ +..-++....+.
T Consensus 69 i~~ad~vi~~~-----~~d~~n~~~~~~a~~~~~~~~ii~~~~~~ 108 (153)
T 1id1_A 69 IDRCRAILALS-----DNDADNAFVVLSAKDMSSDVKTVLAVSDS 108 (153)
T ss_dssp TTTCSEEEECS-----SCHHHHHHHHHHHHHHTSSSCEEEECSSG
T ss_pred hhhCCEEEEec-----CChHHHHHHHHHHHHHCCCCEEEEEECCH
Confidence 35789988643 3334444444444433 333344433333
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=91.74 E-value=0.96 Score=41.58 Aligned_cols=88 Identities=17% Similarity=0.172 Sum_probs=54.5
Q ss_pred CCeEEEECCCc-ccc-hHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-------CCC
Q 020710 149 GIAVCDAGCGT-GSL-AIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------DGK 219 (322)
Q Consensus 149 ~~~VLDvGcG~-G~~-~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------~~~ 219 (322)
..+|+=+|||. |.. +..|.+.|..|+++|.+++.++.+++. +. .++.+|+.+. -..
T Consensus 4 ~~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~~~~----g~-----------~vi~GDat~~~~L~~agi~~ 68 (413)
T 3l9w_A 4 GMRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPDHIETLRKF----GM-----------KVFYGDATRMDLLESAGAAK 68 (413)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHHHHHHHHHT----TC-----------CCEESCTTCHHHHHHTTTTT
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHhC----CC-----------eEEEcCCCCHHHHHhcCCCc
Confidence 46799999863 222 233334589999999999998877632 21 6788998774 367
Q ss_pred ccEEEEcccccccCcchHHH-HHHHHHhccCCeEEEEE
Q 020710 220 YDTVVCLDVLIHYPQSKADG-MIAHLASLAEKRLILSF 256 (322)
Q Consensus 220 fD~V~~~~~l~~~~~~~~~~-~l~~l~~~~~~~~il~~ 256 (322)
.|+|++.. ++++... +...++++.+..-|+.-
T Consensus 69 A~~viv~~-----~~~~~n~~i~~~ar~~~p~~~Iiar 101 (413)
T 3l9w_A 69 AEVLINAI-----DDPQTNLQLTEMVKEHFPHLQIIAR 101 (413)
T ss_dssp CSEEEECC-----SSHHHHHHHHHHHHHHCTTCEEEEE
T ss_pred cCEEEECC-----CChHHHHHHHHHHHHhCCCCeEEEE
Confidence 89988643 3444333 34444444444344433
|
| >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} | Back alignment and structure |
|---|
Probab=91.72 E-value=1.3 Score=39.01 Aligned_cols=77 Identities=21% Similarity=0.101 Sum_probs=55.0
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
.+++||=.|++.|. ++..|++.|++|++++.++..++...+.+...+...++ .++..|+.+.
T Consensus 7 ~~k~vlVTGas~gIG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~-------~~~~~Dl~~~~~v~~~~~ 79 (319)
T 3ioy_A 7 AGRTAFVTGGANGVGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEAEGSGPEV-------MGVQLDVASREGFKMAAD 79 (319)
T ss_dssp TTCEEEEETTTSTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCGGGE-------EEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEcCCchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCeE-------EEEECCCCCHHHHHHHHH
Confidence 46789988887664 34555666999999999998887777666554332122 7888898764
Q ss_pred -----CCCccEEEEcccccc
Q 020710 217 -----DGKYDTVVCLDVLIH 231 (322)
Q Consensus 217 -----~~~fD~V~~~~~l~~ 231 (322)
.+..|+++.+..+..
T Consensus 80 ~~~~~~g~id~lv~nAg~~~ 99 (319)
T 3ioy_A 80 EVEARFGPVSILCNNAGVNL 99 (319)
T ss_dssp HHHHHTCCEEEEEECCCCCC
T ss_pred HHHHhCCCCCEEEECCCcCC
Confidence 267899998876543
|
| >3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber} | Back alignment and structure |
|---|
Probab=91.63 E-value=0.84 Score=39.29 Aligned_cols=73 Identities=19% Similarity=0.042 Sum_probs=53.1
Q ss_pred CCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC---------
Q 020710 149 GIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL--------- 216 (322)
Q Consensus 149 ~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--------- 216 (322)
++++|=.|++.|. .+..|++.|++|+.+|.+++.++...+.+...+.. +.++.+|+.+.
T Consensus 24 ~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~---------~~~~~~Dv~d~~~v~~~~~~ 94 (279)
T 3sju_A 24 PQTAFVTGVSSGIGLAVARTLAARGIAVYGCARDAKNVSAAVDGLRAAGHD---------VDGSSCDVTSTDEVHAAVAA 94 (279)
T ss_dssp -CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCC---------EEEEECCTTCHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCc---------EEEEECCCCCHHHHHHHHHH
Confidence 5789999987664 34566677999999999998877776666544332 27888898764
Q ss_pred ----CCCccEEEEccccc
Q 020710 217 ----DGKYDTVVCLDVLI 230 (322)
Q Consensus 217 ----~~~fD~V~~~~~l~ 230 (322)
-+..|+++.+..+.
T Consensus 95 ~~~~~g~id~lv~nAg~~ 112 (279)
T 3sju_A 95 AVERFGPIGILVNSAGRN 112 (279)
T ss_dssp HHHHHCSCCEEEECCCCC
T ss_pred HHHHcCCCcEEEECCCCC
Confidence 26899999877654
|
| >3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=91.45 E-value=0.57 Score=39.76 Aligned_cols=73 Identities=22% Similarity=0.153 Sum_probs=51.7
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
+++++|=.|++.|. .+..|++.|++|+.+|.+++.++...+.+...+.. +.++.+|+.+.
T Consensus 5 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~---------~~~~~~Dv~~~~~v~~~~~ 75 (257)
T 3imf_A 5 KEKVVIITGGSSGMGKGMATRFAKEGARVVITGRTKEKLEEAKLEIEQFPGQ---------ILTVQMDVRNTDDIQKMIE 75 (257)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCSTTC---------EEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCc---------EEEEEccCCCHHHHHHHHH
Confidence 46778888876654 34556667999999999998877766655433221 27788898764
Q ss_pred -----CCCccEEEEcccc
Q 020710 217 -----DGKYDTVVCLDVL 229 (322)
Q Consensus 217 -----~~~fD~V~~~~~l 229 (322)
-+..|+++.+..+
T Consensus 76 ~~~~~~g~id~lv~nAg~ 93 (257)
T 3imf_A 76 QIDEKFGRIDILINNAAG 93 (257)
T ss_dssp HHHHHHSCCCEEEECCCC
T ss_pred HHHHHcCCCCEEEECCCC
Confidence 2589999987664
|
| >3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=91.32 E-value=0.72 Score=39.04 Aligned_cols=74 Identities=15% Similarity=0.011 Sum_probs=54.7
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
+++++|=.|++.|. .+..|++.|++|+.+|.+++.++...+.+...+... .++.+|+.+.
T Consensus 6 ~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~---------~~~~~Dv~~~~~v~~~~~ 76 (252)
T 3h7a_A 6 RNATVAVIGAGDYIGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAEIEAAGGRI---------VARSLDARNEDEVTAFLN 76 (252)
T ss_dssp CSCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTTCEE---------EEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeE---------EEEECcCCCHHHHHHHHH
Confidence 46788988888764 455566779999999999888877776665544322 7888898765
Q ss_pred ----CCCccEEEEccccc
Q 020710 217 ----DGKYDTVVCLDVLI 230 (322)
Q Consensus 217 ----~~~fD~V~~~~~l~ 230 (322)
.+..|+++.+..+.
T Consensus 77 ~~~~~g~id~lv~nAg~~ 94 (252)
T 3h7a_A 77 AADAHAPLEVTIFNVGAN 94 (252)
T ss_dssp HHHHHSCEEEEEECCCCC
T ss_pred HHHhhCCceEEEECCCcC
Confidence 15889999877653
|
| >3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=91.27 E-value=0.94 Score=38.75 Aligned_cols=73 Identities=16% Similarity=0.124 Sum_probs=53.2
Q ss_pred CCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC---------
Q 020710 149 GIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL--------- 216 (322)
Q Consensus 149 ~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--------- 216 (322)
++++|=.|++.|. .+..|++.|++|+.+|.+++.++...+.+...+... .++..|+.+.
T Consensus 4 ~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~---------~~~~~Dv~d~~~v~~~~~~ 74 (264)
T 3tfo_A 4 DKVILITGASGGIGEGIARELGVAGAKILLGARRQARIEAIATEIRDAGGTA---------LAQVLDVTDRHSVAAFAQA 74 (264)
T ss_dssp TCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTTCEE---------EEEECCTTCHHHHHHHHHH
T ss_pred CCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcE---------EEEEcCCCCHHHHHHHHHH
Confidence 5678888887654 345566679999999999988877776665544322 6778888764
Q ss_pred ----CCCccEEEEccccc
Q 020710 217 ----DGKYDTVVCLDVLI 230 (322)
Q Consensus 217 ----~~~fD~V~~~~~l~ 230 (322)
-+..|+++.+..+.
T Consensus 75 ~~~~~g~iD~lVnnAG~~ 92 (264)
T 3tfo_A 75 AVDTWGRIDVLVNNAGVM 92 (264)
T ss_dssp HHHHHSCCCEEEECCCCC
T ss_pred HHHHcCCCCEEEECCCCC
Confidence 26899999877654
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=91.11 E-value=0.76 Score=39.35 Aligned_cols=82 Identities=11% Similarity=-0.047 Sum_probs=54.8
Q ss_pred CCeEEEECCCcccchHHHHh----cCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-CCCccEE
Q 020710 149 GIAVCDAGCGTGSLAIPLAK----QGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-DGKYDTV 223 (322)
Q Consensus 149 ~~~VLDvGcG~G~~~~~la~----~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~fD~V 223 (322)
.++||=.|| |..+..+++ .|.+|++++-++...+... ..+ ++++.+|+.++ ...+|+|
T Consensus 5 ~~~ilVtGa--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~----~~~-----------~~~~~~D~~d~~~~~~d~v 67 (286)
T 3ius_A 5 TGTLLSFGH--GYTARVLSRALAPQGWRIIGTSRNPDQMEAIR----ASG-----------AEPLLWPGEEPSLDGVTHL 67 (286)
T ss_dssp CCEEEEETC--CHHHHHHHHHHGGGTCEEEEEESCGGGHHHHH----HTT-----------EEEEESSSSCCCCTTCCEE
T ss_pred cCcEEEECC--cHHHHHHHHHHHHCCCEEEEEEcChhhhhhHh----hCC-----------CeEEEecccccccCCCCEE
Confidence 368999995 777666654 4899999999876543322 111 17788887765 4568999
Q ss_pred EEcccccccCcchHHHHHHHHHhc
Q 020710 224 VCLDVLIHYPQSKADGMIAHLASL 247 (322)
Q Consensus 224 ~~~~~l~~~~~~~~~~~l~~l~~~ 247 (322)
+.+.......++....+++.+.+.
T Consensus 68 i~~a~~~~~~~~~~~~l~~a~~~~ 91 (286)
T 3ius_A 68 LISTAPDSGGDPVLAALGDQIAAR 91 (286)
T ss_dssp EECCCCBTTBCHHHHHHHHHHHHT
T ss_pred EECCCccccccHHHHHHHHHHHhh
Confidence 987765544444445667766663
|
| >3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A* | Back alignment and structure |
|---|
Probab=91.07 E-value=1.1 Score=38.53 Aligned_cols=74 Identities=23% Similarity=0.227 Sum_probs=51.8
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCC----------------HHHHHHHHHHhHHhhhccCCCCCCCCCce
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDIS----------------AAMVAEARKKAEEELLADNGGEAPVMPKF 208 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s----------------~~~l~~a~~~~~~~~~~~~~~~~~~~~~~ 208 (322)
.++++|=.|++.|. .+..|++.|++|+.+|.+ .+.++...+.....+.. +.+
T Consensus 10 ~~k~~lVTGas~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~ 80 (286)
T 3uve_A 10 EGKVAFVTGAARGQGRSHAVRLAQEGADIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGHNRR---------IVT 80 (286)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTTTCC---------EEE
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeccccccccccccccccCCHHHHHHHHHHHhhcCCc---------eEE
Confidence 46789999988764 455666779999999987 56665555544433322 277
Q ss_pred EEcccccC-------------CCCccEEEEccccc
Q 020710 209 EVKDLESL-------------DGKYDTVVCLDVLI 230 (322)
Q Consensus 209 ~~~d~~~~-------------~~~fD~V~~~~~l~ 230 (322)
+..|+.+. -+..|+++.+..+.
T Consensus 81 ~~~Dv~~~~~v~~~~~~~~~~~g~id~lv~nAg~~ 115 (286)
T 3uve_A 81 AEVDVRDYDALKAAVDSGVEQLGRLDIIVANAGIG 115 (286)
T ss_dssp EECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred EEcCCCCHHHHHHHHHHHHHHhCCCCEEEECCccc
Confidence 88898764 25899999887653
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=91.05 E-value=1.4 Score=37.70 Aligned_cols=75 Identities=25% Similarity=0.200 Sum_probs=52.3
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCC------------HHHHHHHHHHhHHhhhccCCCCCCCCCceEEcc
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDIS------------AAMVAEARKKAEEELLADNGGEAPVMPKFEVKD 212 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s------------~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d 212 (322)
.+++||=.|++.|. .+..|++.|++|+.+|.+ ...++...+.....+.. +.++..|
T Consensus 9 ~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~D 79 (287)
T 3pxx_A 9 QDKVVLVTGGARGQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTGRK---------AYTAEVD 79 (287)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTTSC---------EEEEECC
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEcccccccccccchhhhHHHHHHHHHHHhcCCc---------eEEEEcc
Confidence 46789988887664 345566779999999987 66666655555443322 2788889
Q ss_pred cccC-------------CCCccEEEEcccccc
Q 020710 213 LESL-------------DGKYDTVVCLDVLIH 231 (322)
Q Consensus 213 ~~~~-------------~~~fD~V~~~~~l~~ 231 (322)
+.+. -+..|+++.+..+..
T Consensus 80 ~~~~~~v~~~~~~~~~~~g~id~lv~nAg~~~ 111 (287)
T 3pxx_A 80 VRDRAAVSRELANAVAEFGKLDVVVANAGICP 111 (287)
T ss_dssp TTCHHHHHHHHHHHHHHHSCCCEEEECCCCCC
T ss_pred CCCHHHHHHHHHHHHHHcCCCCEEEECCCcCc
Confidence 8764 258999998876543
|
| >1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=90.98 E-value=1.2 Score=37.77 Aligned_cols=76 Identities=22% Similarity=0.196 Sum_probs=51.1
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
.++++|=.|++.|. .+..|++.|++|+.+|.+++.++...+.+.......+ +.++.+|+.+.
T Consensus 12 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~-------~~~~~~D~~~~~~v~~~~~ 84 (267)
T 1iy8_A 12 TDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAE-------VLTTVADVSDEAQVEAYVT 84 (267)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCTTCC-------EEEEECCTTSHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCce-------EEEEEccCCCHHHHHHHHH
Confidence 46788888877653 3455666799999999998877665555443210111 26788888764
Q ss_pred -----CCCccEEEEccccc
Q 020710 217 -----DGKYDTVVCLDVLI 230 (322)
Q Consensus 217 -----~~~fD~V~~~~~l~ 230 (322)
-+..|+++.+..+.
T Consensus 85 ~~~~~~g~id~lv~nAg~~ 103 (267)
T 1iy8_A 85 ATTERFGRIDGFFNNAGIE 103 (267)
T ss_dssp HHHHHHSCCSEEEECCCCC
T ss_pred HHHHHcCCCCEEEECCCcC
Confidence 25789999887654
|
| >3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=90.94 E-value=1.2 Score=38.14 Aligned_cols=76 Identities=21% Similarity=0.161 Sum_probs=53.6
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
.+++||=.|++.|. .+..|++.|++|+.+|.+++.++...+.+...+... ..+.++.+|+.+.
T Consensus 10 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~------~~~~~~~~Dv~~~~~v~~~~~ 83 (281)
T 3svt_A 10 QDRTYLVTGGGSGIGKGVAAGLVAAGASVMIVGRNPDKLAGAVQELEALGANG------GAIRYEPTDITNEDETARAVD 83 (281)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTCCSS------CEEEEEECCTTSHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCC------ceEEEEeCCCCCHHHHHHHHH
Confidence 46788988887664 355566779999999999988777766665443210 0127888898764
Q ss_pred -----CCCccEEEEcccc
Q 020710 217 -----DGKYDTVVCLDVL 229 (322)
Q Consensus 217 -----~~~fD~V~~~~~l 229 (322)
.+..|+++.+...
T Consensus 84 ~~~~~~g~id~lv~nAg~ 101 (281)
T 3svt_A 84 AVTAWHGRLHGVVHCAGG 101 (281)
T ss_dssp HHHHHHSCCCEEEECCCC
T ss_pred HHHHHcCCCCEEEECCCc
Confidence 2578999987765
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=90.89 E-value=0.99 Score=40.26 Aligned_cols=48 Identities=23% Similarity=0.214 Sum_probs=37.8
Q ss_pred hhcCCCCCCeEEEECCCc-ccchHHHHhc-CC-EEEEEeCCHHHHHHHHHH
Q 020710 142 NDEGSLKGIAVCDAGCGT-GSLAIPLAKQ-GA-IVSASDISAAMVAEARKK 189 (322)
Q Consensus 142 ~~~~~~~~~~VLDvGcG~-G~~~~~la~~-~~-~v~gvD~s~~~l~~a~~~ 189 (322)
......++.+||-+|+|. |.++..+++. |+ +|+++|.+++.++.+++.
T Consensus 160 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~l 210 (352)
T 3fpc_A 160 ELANIKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEY 210 (352)
T ss_dssp HHTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHH
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh
Confidence 333346788999999885 7778888877 88 799999999888877654
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=90.88 E-value=0.81 Score=40.36 Aligned_cols=89 Identities=18% Similarity=0.139 Sum_probs=57.7
Q ss_pred CCeEEEECCCc--ccchHHHHhcCC--EEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEccccc-CCCCccEE
Q 020710 149 GIAVCDAGCGT--GSLAIPLAKQGA--IVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLES-LDGKYDTV 223 (322)
Q Consensus 149 ~~~VLDvGcG~--G~~~~~la~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~fD~V 223 (322)
..+|.=||+|. +.++..|.+.|. +|++.|.+++.++.+.+ .+.. .-...|..+ .-...|+|
T Consensus 33 ~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~----~G~~----------~~~~~~~~~~~~~~aDvV 98 (314)
T 3ggo_A 33 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVD----LGII----------DEGTTSIAKVEDFSPDFV 98 (314)
T ss_dssp CSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHH----TTSC----------SEEESCTTGGGGGCCSEE
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHH----CCCc----------chhcCCHHHHhhccCCEE
Confidence 36899999884 345566667788 99999999987776543 2221 123345554 44568999
Q ss_pred EEcccccccCcchHHHHHHHHHhccCCe-EEEEE
Q 020710 224 VCLDVLIHYPQSKADGMIAHLASLAEKR-LILSF 256 (322)
Q Consensus 224 ~~~~~l~~~~~~~~~~~l~~l~~~~~~~-~il~~ 256 (322)
+.+ +|......+++++...++++ +++.+
T Consensus 99 ila-----vp~~~~~~vl~~l~~~l~~~~iv~d~ 127 (314)
T 3ggo_A 99 MLS-----SPVRTFREIAKKLSYILSEDATVTDQ 127 (314)
T ss_dssp EEC-----SCGGGHHHHHHHHHHHSCTTCEEEEC
T ss_pred EEe-----CCHHHHHHHHHHHhhccCCCcEEEEC
Confidence 853 45545667888887765544 44444
|
| >3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=90.69 E-value=1.4 Score=37.81 Aligned_cols=75 Identities=27% Similarity=0.296 Sum_probs=53.1
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeC-------------CHHHHHHHHHHhHHhhhccCCCCCCCCCceEEc
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDI-------------SAAMVAEARKKAEEELLADNGGEAPVMPKFEVK 211 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~-------------s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (322)
.++++|=.|++.|. .+..|++.|++|+.+|. +++.++...+.....+.. +.++..
T Consensus 14 ~gk~~lVTGas~gIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~ 84 (280)
T 3pgx_A 14 QGRVAFITGAARGQGRSHAVRLAAEGADIIACDICAPVSASVTYAPASPEDLDETARLVEDQGRK---------ALTRVL 84 (280)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTTCC---------EEEEEC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcCCe---------EEEEEc
Confidence 46789988887765 35566677999999998 667666666555544322 277888
Q ss_pred ccccC-------------CCCccEEEEcccccc
Q 020710 212 DLESL-------------DGKYDTVVCLDVLIH 231 (322)
Q Consensus 212 d~~~~-------------~~~fD~V~~~~~l~~ 231 (322)
|+.+. -+..|+++.+..+.+
T Consensus 85 Dv~~~~~v~~~~~~~~~~~g~id~lvnnAg~~~ 117 (280)
T 3pgx_A 85 DVRDDAALRELVADGMEQFGRLDVVVANAGVLS 117 (280)
T ss_dssp CTTCHHHHHHHHHHHHHHHCCCCEEEECCCCCC
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCC
Confidence 98764 258999998876543
|
| >1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=90.61 E-value=1.3 Score=37.51 Aligned_cols=74 Identities=22% Similarity=0.227 Sum_probs=51.0
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
.++++|=.|++.|. .+..|++.|++|+.+|.+++.++...+.+...+.. +.++.+|+.+.
T Consensus 6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~---------~~~~~~D~~~~~~~~~~~~ 76 (262)
T 1zem_A 6 NGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKGVE---------ARSYVCDVTSEEAVIGTVD 76 (262)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTSC---------EEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCc---------EEEEEecCCCHHHHHHHHH
Confidence 46788888887654 34455667999999999987776655555433221 26778888764
Q ss_pred -----CCCccEEEEccccc
Q 020710 217 -----DGKYDTVVCLDVLI 230 (322)
Q Consensus 217 -----~~~fD~V~~~~~l~ 230 (322)
-+..|+++.+..+.
T Consensus 77 ~~~~~~g~id~lv~nAg~~ 95 (262)
T 1zem_A 77 SVVRDFGKIDFLFNNAGYQ 95 (262)
T ss_dssp HHHHHHSCCCEEEECCCCC
T ss_pred HHHHHhCCCCEEEECCCCC
Confidence 25799999877643
|
| >1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=90.53 E-value=2.9 Score=35.62 Aligned_cols=76 Identities=16% Similarity=0.075 Sum_probs=50.6
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
.+++||=.|++.|. ++..|++.|++|++++.++..++...+.+...+...+ +.++.+|+.+.
T Consensus 31 ~~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~-------~~~~~~Dl~~~~~v~~~~~ 103 (279)
T 1xg5_A 31 RDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGT-------LIPYRCDLSNEEDILSMFS 103 (279)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSE-------EEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHHHhcCCCce-------EEEEEecCCCHHHHHHHHH
Confidence 36788888876553 3344556699999999998777666555544332211 16778888764
Q ss_pred -----CCCccEEEEccccc
Q 020710 217 -----DGKYDTVVCLDVLI 230 (322)
Q Consensus 217 -----~~~fD~V~~~~~l~ 230 (322)
.+..|+|+.+..+.
T Consensus 104 ~~~~~~g~iD~vi~~Ag~~ 122 (279)
T 1xg5_A 104 AIRSQHSGVDICINNAGLA 122 (279)
T ss_dssp HHHHHHCCCSEEEECCCCC
T ss_pred HHHHhCCCCCEEEECCCCC
Confidence 14799999877653
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=90.50 E-value=3 Score=33.02 Aligned_cols=89 Identities=20% Similarity=0.168 Sum_probs=51.9
Q ss_pred CCeEEEECCCc-ccc-hHHHHhc-CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------C
Q 020710 149 GIAVCDAGCGT-GSL-AIPLAKQ-GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL--------D 217 (322)
Q Consensus 149 ~~~VLDvGcG~-G~~-~~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--------~ 217 (322)
+.+|+=+|||. |.. +..|.+. |.+|+++|.+++.++.+++ .+. .++.+|..+. -
T Consensus 39 ~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~----~g~-----------~~~~gd~~~~~~l~~~~~~ 103 (183)
T 3c85_A 39 HAQVLILGMGRIGTGAYDELRARYGKISLGIEIREEAAQQHRS----EGR-----------NVISGDATDPDFWERILDT 103 (183)
T ss_dssp TCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHHH----TTC-----------CEEECCTTCHHHHHTBCSC
T ss_pred CCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCHHHHHHHHH----CCC-----------CEEEcCCCCHHHHHhccCC
Confidence 56899999873 332 3445566 8999999999987766543 221 5566665331 2
Q ss_pred CCccEEEEcccccccCcch-HHHHHHHHHhccCCeEEEEEC
Q 020710 218 GKYDTVVCLDVLIHYPQSK-ADGMIAHLASLAEKRLILSFA 257 (322)
Q Consensus 218 ~~fD~V~~~~~l~~~~~~~-~~~~l~~l~~~~~~~~il~~~ 257 (322)
..+|+|+... +++. ...++..+++..+...++...
T Consensus 104 ~~ad~vi~~~-----~~~~~~~~~~~~~~~~~~~~~ii~~~ 139 (183)
T 3c85_A 104 GHVKLVLLAM-----PHHQGNQTALEQLQRRNYKGQIAAIA 139 (183)
T ss_dssp CCCCEEEECC-----SSHHHHHHHHHHHHHTTCCSEEEEEE
T ss_pred CCCCEEEEeC-----CChHHHHHHHHHHHHHCCCCEEEEEE
Confidence 4689988642 2222 234444555544344444433
|
| >3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=90.48 E-value=1.1 Score=38.61 Aligned_cols=74 Identities=22% Similarity=0.135 Sum_probs=52.9
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
+++++|=.|++.|. .+..|++.|++|+.+|.+.+.++...+.+...+.. +.++..|+.+.
T Consensus 27 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~---------~~~~~~Dv~d~~~v~~~~~ 97 (283)
T 3v8b_A 27 PSPVALITGAGSGIGRATALALAADGVTVGALGRTRTEVEEVADEIVGAGGQ---------AIALEADVSDELQMRNAVR 97 (283)
T ss_dssp CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHTTTTCC---------EEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCc---------EEEEEccCCCHHHHHHHHH
Confidence 46788988887664 34556667999999999988777666655433322 27888898764
Q ss_pred -----CCCccEEEEccccc
Q 020710 217 -----DGKYDTVVCLDVLI 230 (322)
Q Consensus 217 -----~~~fD~V~~~~~l~ 230 (322)
-+..|+++.+..+.
T Consensus 98 ~~~~~~g~iD~lVnnAg~~ 116 (283)
T 3v8b_A 98 DLVLKFGHLDIVVANAGIN 116 (283)
T ss_dssp HHHHHHSCCCEEEECCCCC
T ss_pred HHHHHhCCCCEEEECCCCC
Confidence 26899999877653
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=90.47 E-value=1.2 Score=40.67 Aligned_cols=44 Identities=30% Similarity=0.244 Sum_probs=35.5
Q ss_pred CCCCCeEEEECCCc-ccchHHHHhc-CC-EEEEEeCCHHHHHHHHHH
Q 020710 146 SLKGIAVCDAGCGT-GSLAIPLAKQ-GA-IVSASDISAAMVAEARKK 189 (322)
Q Consensus 146 ~~~~~~VLDvGcG~-G~~~~~la~~-~~-~v~gvD~s~~~l~~a~~~ 189 (322)
..++.+||=+|+|. |.++..+++. |+ +|+++|.+++-++.+++.
T Consensus 211 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~l 257 (404)
T 3ip1_A 211 IRPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKEL 257 (404)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc
Confidence 46788999999874 6677777766 88 899999999988887654
|
| >3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=90.45 E-value=2 Score=36.63 Aligned_cols=76 Identities=24% Similarity=0.207 Sum_probs=53.4
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCC------------HHHHHHHHHHhHHhhhccCCCCCCCCCceEEcc
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDIS------------AAMVAEARKKAEEELLADNGGEAPVMPKFEVKD 212 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s------------~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d 212 (322)
.++++|=.|++.|. .+..|++.|++|+.+|.+ ++.++...+.....+.. +.++.+|
T Consensus 12 ~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~D 82 (278)
T 3sx2_A 12 TGKVAFITGAARGQGRAHAVRLAADGADIIAVDLCDQIASVPYPLATPEELAATVKLVEDIGSR---------IVARQAD 82 (278)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHTCC---------EEEEECC
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCeEEEEecccccccccccccchHHHHHHHHHHHhcCCe---------EEEEeCC
Confidence 46789988887664 455666779999999987 66666555555443322 2788899
Q ss_pred cccC-------------CCCccEEEEccccccc
Q 020710 213 LESL-------------DGKYDTVVCLDVLIHY 232 (322)
Q Consensus 213 ~~~~-------------~~~fD~V~~~~~l~~~ 232 (322)
+.+. -+..|+++.+..+...
T Consensus 83 ~~~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~ 115 (278)
T 3sx2_A 83 VRDRESLSAALQAGLDELGRLDIVVANAGIAPM 115 (278)
T ss_dssp TTCHHHHHHHHHHHHHHHCCCCEEEECCCCCCC
T ss_pred CCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCC
Confidence 8764 2589999998776544
|
| >3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans} | Back alignment and structure |
|---|
Probab=90.42 E-value=1.5 Score=36.83 Aligned_cols=74 Identities=22% Similarity=0.205 Sum_probs=49.7
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
.+++||=.|++.|. ++..|+++|++|+++|.++..++...+.+...+.. +.++.+|+.+.
T Consensus 12 ~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~---------~~~~~~D~~~~~~~~~~~~ 82 (260)
T 3awd_A 12 DNRVAIVTGGAQNIGLACVTALAEAGARVIIADLDEAMATKAVEDLRMEGHD---------VSSVVMDVTNTESVQNAVR 82 (260)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCC---------EEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCc---------eEEEEecCCCHHHHHHHHH
Confidence 46788888876543 33445566999999999987666555554433221 27788888764
Q ss_pred -----CCCccEEEEccccc
Q 020710 217 -----DGKYDTVVCLDVLI 230 (322)
Q Consensus 217 -----~~~fD~V~~~~~l~ 230 (322)
.+..|+|+.+..+.
T Consensus 83 ~~~~~~~~id~vi~~Ag~~ 101 (260)
T 3awd_A 83 SVHEQEGRVDILVACAGIC 101 (260)
T ss_dssp HHHHHHSCCCEEEECCCCC
T ss_pred HHHHHcCCCCEEEECCCCC
Confidence 14789999876643
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=90.33 E-value=1 Score=39.94 Aligned_cols=45 Identities=16% Similarity=0.126 Sum_probs=36.5
Q ss_pred cCCCCCCeEEEECCC--cccchHHHHhc-CCEEEEEeCCHHHHHHHHH
Q 020710 144 EGSLKGIAVCDAGCG--TGSLAIPLAKQ-GAIVSASDISAAMVAEARK 188 (322)
Q Consensus 144 ~~~~~~~~VLDvGcG--~G~~~~~la~~-~~~v~gvD~s~~~l~~a~~ 188 (322)
....++.+||-+||| .|..+..+++. |++|+++|.+++.++.+++
T Consensus 140 ~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~ 187 (340)
T 3gms_A 140 LNLQRNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEELLR 187 (340)
T ss_dssp SCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHH
T ss_pred cccCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh
Confidence 335678899999997 67777777765 9999999999988887765
|
| >2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A* | Back alignment and structure |
|---|
Probab=90.24 E-value=2.2 Score=36.03 Aligned_cols=74 Identities=20% Similarity=0.180 Sum_probs=50.9
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
.+++||=.|++.|. .+..|++.|++|+.+|.+++.++...+.+...+.. +.++.+|+.+.
T Consensus 8 ~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~---------~~~~~~D~~~~~~~~~~~~ 78 (260)
T 2ae2_A 8 EGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKGFK---------VEASVCDLSSRSERQELMN 78 (260)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCE---------EEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCc---------EEEEEcCCCCHHHHHHHHH
Confidence 46788888876553 34455666999999999987776655554433222 16788888764
Q ss_pred -----C-CCccEEEEccccc
Q 020710 217 -----D-GKYDTVVCLDVLI 230 (322)
Q Consensus 217 -----~-~~fD~V~~~~~l~ 230 (322)
- +..|+++.+..+.
T Consensus 79 ~~~~~~~g~id~lv~~Ag~~ 98 (260)
T 2ae2_A 79 TVANHFHGKLNILVNNAGIV 98 (260)
T ss_dssp HHHHHTTTCCCEEEECCCCC
T ss_pred HHHHHcCCCCCEEEECCCCC
Confidence 1 7899999887653
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=90.23 E-value=0.7 Score=41.66 Aligned_cols=45 Identities=33% Similarity=0.332 Sum_probs=36.2
Q ss_pred CCCCCCeEEEECCCc-ccchHHHHhc-CC-EEEEEeCCHHHHHHHHHH
Q 020710 145 GSLKGIAVCDAGCGT-GSLAIPLAKQ-GA-IVSASDISAAMVAEARKK 189 (322)
Q Consensus 145 ~~~~~~~VLDvGcG~-G~~~~~la~~-~~-~v~gvD~s~~~l~~a~~~ 189 (322)
...++.+||-+|+|. |.++..+++. |+ +|+++|.+++.++.+++.
T Consensus 179 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l 226 (370)
T 4ej6_A 179 GIKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEV 226 (370)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc
Confidence 345788999999975 7777777776 88 899999999888877654
|
| >2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A* | Back alignment and structure |
|---|
Probab=90.21 E-value=1.7 Score=36.49 Aligned_cols=74 Identities=18% Similarity=0.132 Sum_probs=51.3
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
.++++|=.|++.|. .+..|++.|++|+.++.+++.++...+.+...+.. +.++.+|+.+.
T Consensus 6 ~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~---------~~~~~~Dv~~~~~~~~~~~ 76 (247)
T 2jah_A 6 QGKVALITGASSGIGEATARALAAEGAAVAIAARRVEKLRALGDELTAAGAK---------VHVLELDVADRQGVDAAVA 76 (247)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCC---------EEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCc---------EEEEECCCCCHHHHHHHHH
Confidence 36788888877653 34555667999999999988777665555443321 26788888764
Q ss_pred -----CCCccEEEEccccc
Q 020710 217 -----DGKYDTVVCLDVLI 230 (322)
Q Consensus 217 -----~~~fD~V~~~~~l~ 230 (322)
-+..|+++.+..+.
T Consensus 77 ~~~~~~g~id~lv~nAg~~ 95 (247)
T 2jah_A 77 STVEALGGLDILVNNAGIM 95 (247)
T ss_dssp HHHHHHSCCSEEEECCCCC
T ss_pred HHHHHcCCCCEEEECCCCC
Confidence 15899999876653
|
| >1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=89.99 E-value=1.3 Score=37.91 Aligned_cols=76 Identities=24% Similarity=0.199 Sum_probs=50.6
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhh-ccCCCCCCCCCceEEcccccC-------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELL-ADNGGEAPVMPKFEVKDLESL------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~------- 216 (322)
.++++|=.|++.|. .+..|++.|++|+.+|.+++.++...+.+...+. ..+ +.++.+|+.+.
T Consensus 5 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~-------~~~~~~Dv~~~~~v~~~~ 77 (280)
T 1xkq_A 5 SNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQ-------VNSVVADVTTEDGQDQII 77 (280)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCGGG-------EEEEECCTTSHHHHHHHH
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcc-------eEEEEecCCCHHHHHHHH
Confidence 35678888876553 3455566699999999998877666555443221 001 27788898764
Q ss_pred ------CCCccEEEEccccc
Q 020710 217 ------DGKYDTVVCLDVLI 230 (322)
Q Consensus 217 ------~~~fD~V~~~~~l~ 230 (322)
-+..|+++.+..+.
T Consensus 78 ~~~~~~~g~iD~lv~nAg~~ 97 (280)
T 1xkq_A 78 NSTLKQFGKIDVLVNNAGAA 97 (280)
T ss_dssp HHHHHHHSCCCEEEECCCCC
T ss_pred HHHHHhcCCCCEEEECCCCC
Confidence 25799999887643
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=89.97 E-value=0.88 Score=40.76 Aligned_cols=46 Identities=28% Similarity=0.348 Sum_probs=37.6
Q ss_pred cCCCCCCeEEEECCCc-ccchHHHHhc-CCE-EEEEeCCHHHHHHHHHH
Q 020710 144 EGSLKGIAVCDAGCGT-GSLAIPLAKQ-GAI-VSASDISAAMVAEARKK 189 (322)
Q Consensus 144 ~~~~~~~~VLDvGcG~-G~~~~~la~~-~~~-v~gvD~s~~~l~~a~~~ 189 (322)
.+..++.+||-+|+|. |.++..+++. |++ |+++|.+++-++.+++.
T Consensus 175 ~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l 223 (363)
T 3m6i_A 175 AGVRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEI 223 (363)
T ss_dssp HTCCTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHH
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh
Confidence 3346788999999875 7777888776 887 99999999999888765
|
| >3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=89.95 E-value=1 Score=38.68 Aligned_cols=75 Identities=19% Similarity=0.150 Sum_probs=54.7
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
.++++|=.|++.|. .+..|++.|++|+.+|.+++.++...+.+...+.. +.++.+|+.+.
T Consensus 31 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~---------~~~~~~Dl~d~~~v~~~~~ 101 (276)
T 3r1i_A 31 SGKRALITGASTGIGKKVALAYAEAGAQVAVAARHSDALQVVADEIAGVGGK---------ALPIRCDVTQPDQVRGMLD 101 (276)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTTCC---------CEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCe---------EEEEEcCCCCHHHHHHHHH
Confidence 46789988887664 35556677999999999988777766666544322 27888998775
Q ss_pred -----CCCccEEEEcccccc
Q 020710 217 -----DGKYDTVVCLDVLIH 231 (322)
Q Consensus 217 -----~~~fD~V~~~~~l~~ 231 (322)
-+..|+++.+..+..
T Consensus 102 ~~~~~~g~iD~lvnnAg~~~ 121 (276)
T 3r1i_A 102 QMTGELGGIDIAVCNAGIVS 121 (276)
T ss_dssp HHHHHHSCCSEEEECCCCCC
T ss_pred HHHHHcCCCCEEEECCCCCC
Confidence 258999998876544
|
| >4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=89.87 E-value=0.96 Score=38.78 Aligned_cols=74 Identities=19% Similarity=0.091 Sum_probs=53.4
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
.++++|=.|++.|. .+..|++.|++|+.+|.+++.++...+.+...+... .++.+|+.+.
T Consensus 25 ~gk~~lVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~---------~~~~~Dv~d~~~v~~~~~ 95 (271)
T 4ibo_A 25 GGRTALVTGSSRGLGRAMAEGLAVAGARILINGTDPSRVAQTVQEFRNVGHDA---------EAVAFDVTSESEIIEAFA 95 (271)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTTCCE---------EECCCCTTCHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCce---------EEEEcCCCCHHHHHHHHH
Confidence 46788888876654 345566679999999999988877766665543322 6778888764
Q ss_pred -----CCCccEEEEccccc
Q 020710 217 -----DGKYDTVVCLDVLI 230 (322)
Q Consensus 217 -----~~~fD~V~~~~~l~ 230 (322)
.+..|+++.+..+.
T Consensus 96 ~~~~~~g~iD~lv~nAg~~ 114 (271)
T 4ibo_A 96 RLDEQGIDVDILVNNAGIQ 114 (271)
T ss_dssp HHHHHTCCCCEEEECCCCC
T ss_pred HHHHHCCCCCEEEECCCCC
Confidence 35899999887654
|
| >3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=89.86 E-value=1.2 Score=37.64 Aligned_cols=75 Identities=16% Similarity=0.019 Sum_probs=53.8
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
.++++|=.|++.|. .+..|++.|++|+.+|.+++.++...+.+...+.. +.++..|+.+.
T Consensus 11 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~---------~~~~~~Dv~d~~~v~~~~~ 81 (256)
T 3gaf_A 11 NDAVAIVTGAAAGIGRAIAGTFAKAGASVVVTDLKSEGAEAVAAAIRQAGGK---------AIGLECNVTDEQHREAVIK 81 (256)
T ss_dssp TTCEEEECSCSSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHHHTTCC---------EEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCc---------EEEEECCCCCHHHHHHHHH
Confidence 46788888877664 34555666999999999998877776666554322 27788898764
Q ss_pred -----CCCccEEEEcccccc
Q 020710 217 -----DGKYDTVVCLDVLIH 231 (322)
Q Consensus 217 -----~~~fD~V~~~~~l~~ 231 (322)
-+..|+++.+..+..
T Consensus 82 ~~~~~~g~id~lv~nAg~~~ 101 (256)
T 3gaf_A 82 AALDQFGKITVLVNNAGGGG 101 (256)
T ss_dssp HHHHHHSCCCEEEECCCCCC
T ss_pred HHHHHcCCCCEEEECCCCCC
Confidence 258999998876543
|
| >1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=89.84 E-value=1.6 Score=37.28 Aligned_cols=75 Identities=21% Similarity=0.107 Sum_probs=51.1
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
.+++||=.|++.|. ++..|++.|++|+++|.++..++...+.+...+.. +.++.+|+.+.
T Consensus 30 ~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~---------~~~~~~Dl~~~~~v~~~~~ 100 (272)
T 1yb1_A 30 TGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLGAK---------VHTFVVDCSNREDIYSSAK 100 (272)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCC---------EEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEEcCHHHHHHHHHHHHhcCCe---------EEEEEeeCCCHHHHHHHHH
Confidence 46788888876543 23445556999999999987776665555443322 27888888764
Q ss_pred -----CCCccEEEEcccccc
Q 020710 217 -----DGKYDTVVCLDVLIH 231 (322)
Q Consensus 217 -----~~~fD~V~~~~~l~~ 231 (322)
-+..|+|+.+..+..
T Consensus 101 ~~~~~~g~iD~li~~Ag~~~ 120 (272)
T 1yb1_A 101 KVKAEIGDVSILVNNAGVVY 120 (272)
T ss_dssp HHHHHTCCCSEEEECCCCCC
T ss_pred HHHHHCCCCcEEEECCCcCC
Confidence 257999998876543
|
| >1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=89.81 E-value=2.3 Score=36.20 Aligned_cols=74 Identities=26% Similarity=0.172 Sum_probs=51.3
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
.++++|=.|++.|. .+..|++.|++|+.+|.+++.++...+.+...+.. +.++.+|+.+.
T Consensus 20 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~---------~~~~~~D~~~~~~~~~~~~ 90 (273)
T 1ae1_A 20 KGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGLN---------VEGSVCDLLSRTERDKLMQ 90 (273)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCC---------EEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCc---------eEEEECCCCCHHHHHHHHH
Confidence 46788988876554 34455666999999999988776655555433322 26788888664
Q ss_pred -----C-CCccEEEEccccc
Q 020710 217 -----D-GKYDTVVCLDVLI 230 (322)
Q Consensus 217 -----~-~~fD~V~~~~~l~ 230 (322)
- +..|+++.+..+.
T Consensus 91 ~~~~~~~g~id~lv~nAg~~ 110 (273)
T 1ae1_A 91 TVAHVFDGKLNILVNNAGVV 110 (273)
T ss_dssp HHHHHTTSCCCEEEECCCCC
T ss_pred HHHHHcCCCCcEEEECCCCC
Confidence 1 7899999887653
|
| >3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A* | Back alignment and structure |
|---|
Probab=89.79 E-value=2.6 Score=44.44 Aligned_cols=44 Identities=16% Similarity=0.144 Sum_probs=38.1
Q ss_pred CCCeEEEECCCcccchHHHHhcCC-E-EEEEeCCHHHHHHHHHHhH
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQGA-I-VSASDISAAMVAEARKKAE 191 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~~~-~-v~gvD~s~~~l~~a~~~~~ 191 (322)
...+++|+-||.|.++..|...|. + +.++|+++.+++.-+.++.
T Consensus 850 ~~l~viDLFsG~GGlslGfe~AG~~~vv~avEid~~A~~ty~~N~p 895 (1330)
T 3av4_A 850 PKLRTLDVFSGCGGLSEGFHQAGISETLWAIEMWDPAAQAFRLNNP 895 (1330)
T ss_dssp CCEEEEEETCTTSHHHHHHHHTTSEEEEEEECCSHHHHHHHHHHCT
T ss_pred CCceEEecccCccHHHHHHHHCCCCceEEEEECCHHHHHHHHHhCC
Confidence 456899999999999999998897 4 7899999999988777654
|
| >3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A* | Back alignment and structure |
|---|
Probab=89.79 E-value=2.6 Score=35.97 Aligned_cols=107 Identities=12% Similarity=0.026 Sum_probs=62.5
Q ss_pred CCCeEEEECCCcccchHHHHhc---------CCEEEEEe-----CCHH-------------------HHHHHHHHhHHhh
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQ---------GAIVSASD-----ISAA-------------------MVAEARKKAEEEL 194 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~---------~~~v~gvD-----~s~~-------------------~l~~a~~~~~~~~ 194 (322)
-++.|+|+||-.|..+..++.. ..+|++.| +.+. ..+..++......
T Consensus 69 vpG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~~ 148 (257)
T 3tos_A 69 VPGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAHE 148 (257)
T ss_dssp SCSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHHH
T ss_pred CCCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHHh
Confidence 3679999999999988886642 35799999 3221 0011111111000
Q ss_pred hccCCCCCCCCCceEEcccccC---------CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEECC
Q 020710 195 LADNGGEAPVMPKFEVKDLESL---------DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAP 258 (322)
Q Consensus 195 ~~~~~~~~~~~~~~~~~d~~~~---------~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~ 258 (322)
...+.+....+++++.+++.+. .++||+|..-.-. ... ....++.+...+.+|++|.+..
T Consensus 149 ~~~~~g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D~--Y~~--t~~~le~~~p~l~~GGvIv~DD 217 (257)
T 3tos_A 149 CSDFFGHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDLDL--YEP--TKAVLEAIRPYLTKGSIVAFDE 217 (257)
T ss_dssp TTSTTTTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECCCC--HHH--HHHHHHHHGGGEEEEEEEEESS
T ss_pred hhhhcCCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcCcc--cch--HHHHHHHHHHHhCCCcEEEEcC
Confidence 0001111113459999998653 2469999875421 112 3467778877788888888754
|
| >4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=89.62 E-value=1.8 Score=36.76 Aligned_cols=75 Identities=23% Similarity=0.157 Sum_probs=53.2
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHH-hhhccCCCCCCCCCceEEcccccC-------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEE-ELLADNGGEAPVMPKFEVKDLESL------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~-~~~~~~~~~~~~~~~~~~~d~~~~------- 216 (322)
.+++||=.|++.|. .+..|++.|++|+.+|.+++.++...+.+.+ .+.. +.++..|+.+.
T Consensus 19 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~---------~~~~~~Dv~~~~~v~~~~ 89 (266)
T 4egf_A 19 DGKRALITGATKGIGADIARAFAAAGARLVLSGRDVSELDAARRALGEQFGTD---------VHTVAIDLAEPDAPAELA 89 (266)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCC---------EEEEECCTTSTTHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCc---------EEEEEecCCCHHHHHHHH
Confidence 46788888877664 3455666799999999998887776666544 2221 27888998775
Q ss_pred ------CCCccEEEEcccccc
Q 020710 217 ------DGKYDTVVCLDVLIH 231 (322)
Q Consensus 217 ------~~~fD~V~~~~~l~~ 231 (322)
-+..|+++.+..+.+
T Consensus 90 ~~~~~~~g~id~lv~nAg~~~ 110 (266)
T 4egf_A 90 RRAAEAFGGLDVLVNNAGISH 110 (266)
T ss_dssp HHHHHHHTSCSEEEEECCCCC
T ss_pred HHHHHHcCCCCEEEECCCcCC
Confidence 258999998766543
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=89.59 E-value=0.78 Score=40.54 Aligned_cols=43 Identities=26% Similarity=0.237 Sum_probs=33.4
Q ss_pred CCCCCCeEEEECC--CcccchHHHHhc-CCEEEEEeCCHHHHHHHH
Q 020710 145 GSLKGIAVCDAGC--GTGSLAIPLAKQ-GAIVSASDISAAMVAEAR 187 (322)
Q Consensus 145 ~~~~~~~VLDvGc--G~G~~~~~la~~-~~~v~gvD~s~~~l~~a~ 187 (322)
...++.+||-.|| |.|..+..+++. |++|+++|.+++.++.++
T Consensus 142 ~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~ 187 (333)
T 1v3u_A 142 GVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLK 187 (333)
T ss_dssp CCCSSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH
T ss_pred CCCCCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 3457889999998 566666666654 999999999998877763
|
| >3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=89.47 E-value=2.1 Score=36.61 Aligned_cols=75 Identities=21% Similarity=0.140 Sum_probs=51.3
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCC------------HHHHHHHHHHhHHhhhccCCCCCCCCCceEEcc
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDIS------------AAMVAEARKKAEEELLADNGGEAPVMPKFEVKD 212 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s------------~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d 212 (322)
.++++|=.|++.|. .+..|++.|++|+.+|.+ .+.++...+.....+.. +.++..|
T Consensus 9 ~~k~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~D 79 (281)
T 3s55_A 9 EGKTALITGGARGMGRSHAVALAEAGADIAICDRCENSDVVGYPLATADDLAETVALVEKTGRR---------CISAKVD 79 (281)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHTTCC---------EEEEECC
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCccccccccccccHHHHHHHHHHHHhcCCe---------EEEEeCC
Confidence 46789999987664 345566779999999986 55555554444443322 2788889
Q ss_pred cccC-------------CCCccEEEEcccccc
Q 020710 213 LESL-------------DGKYDTVVCLDVLIH 231 (322)
Q Consensus 213 ~~~~-------------~~~fD~V~~~~~l~~ 231 (322)
+.+. -+..|+++.+..+.+
T Consensus 80 v~~~~~v~~~~~~~~~~~g~id~lv~nAg~~~ 111 (281)
T 3s55_A 80 VKDRAALESFVAEAEDTLGGIDIAITNAGIST 111 (281)
T ss_dssp TTCHHHHHHHHHHHHHHHTCCCEEEECCCCCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCEEEECCCCCC
Confidence 8764 258999998876543
|
| >1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=89.43 E-value=1.7 Score=37.82 Aligned_cols=76 Identities=22% Similarity=0.229 Sum_probs=50.3
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhc-cCCCCCCCCCceEEcccccC-------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLA-DNGGEAPVMPKFEVKDLESL------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~-~~~~~~~~~~~~~~~d~~~~------- 216 (322)
.++++|=.|++.|. .+..|++.|++|+.+|.+++.++...+.+...+.. .+ +.++.+|+.+.
T Consensus 25 ~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~-------~~~~~~Dv~d~~~v~~~~ 97 (297)
T 1xhl_A 25 SGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEK-------INAVVADVTEASGQDDII 97 (297)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGG-------EEEEECCTTSHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCce-------EEEEecCCCCHHHHHHHH
Confidence 35678877776553 34455566999999999988776665555433210 01 27788888764
Q ss_pred ------CCCccEEEEccccc
Q 020710 217 ------DGKYDTVVCLDVLI 230 (322)
Q Consensus 217 ------~~~fD~V~~~~~l~ 230 (322)
-+..|+++.+..+.
T Consensus 98 ~~~~~~~g~iD~lvnnAG~~ 117 (297)
T 1xhl_A 98 NTTLAKFGKIDILVNNAGAN 117 (297)
T ss_dssp HHHHHHHSCCCEEEECCCCC
T ss_pred HHHHHhcCCCCEEEECCCcC
Confidence 25799999877643
|
| >2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A* | Back alignment and structure |
|---|
Probab=89.29 E-value=1.8 Score=37.00 Aligned_cols=74 Identities=19% Similarity=0.107 Sum_probs=50.8
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
++++||=.|++.|. .+..|++.|++|+.+|.+++.++...+.+...+.. +.++.+|+.+.
T Consensus 21 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~---------~~~~~~Dv~~~~~v~~~~~ 91 (277)
T 2rhc_B 21 DSEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAGVE---------ADGRTCDVRSVPEIEALVA 91 (277)
T ss_dssp TSCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCC---------EEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCc---------eEEEECCCCCHHHHHHHHH
Confidence 35788988877654 34455666999999999987776655555433321 16788888764
Q ss_pred -----CCCccEEEEccccc
Q 020710 217 -----DGKYDTVVCLDVLI 230 (322)
Q Consensus 217 -----~~~fD~V~~~~~l~ 230 (322)
-+..|+++.+..+.
T Consensus 92 ~~~~~~g~iD~lv~~Ag~~ 110 (277)
T 2rhc_B 92 AVVERYGPVDVLVNNAGRP 110 (277)
T ss_dssp HHHHHTCSCSEEEECCCCC
T ss_pred HHHHHhCCCCEEEECCCCC
Confidence 25799999887653
|
| >3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=89.25 E-value=0.8 Score=39.52 Aligned_cols=74 Identities=19% Similarity=0.138 Sum_probs=52.1
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
.++++|=.|++.|. .+..|++.|++|+.+|.+++.++...+.+...+.. +.++.+|+.+.
T Consensus 7 ~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~---------~~~~~~Dv~~~~~v~~~~~ 77 (280)
T 3tox_A 7 EGKIAIVTGASSGIGRAAALLFAREGAKVVVTARNGNALAELTDEIAGGGGE---------AAALAGDVGDEALHEALVE 77 (280)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHTTTTCC---------EEECCCCTTCHHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCc---------EEEEECCCCCHHHHHHHHH
Confidence 46788888887664 34556677999999999988777666655433222 26778888764
Q ss_pred -----CCCccEEEEccccc
Q 020710 217 -----DGKYDTVVCLDVLI 230 (322)
Q Consensus 217 -----~~~fD~V~~~~~l~ 230 (322)
-+..|+++.+..+.
T Consensus 78 ~~~~~~g~iD~lvnnAg~~ 96 (280)
T 3tox_A 78 LAVRRFGGLDTAFNNAGAL 96 (280)
T ss_dssp HHHHHHSCCCEEEECCCCC
T ss_pred HHHHHcCCCCEEEECCCCC
Confidence 25899999877643
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=89.17 E-value=0.6 Score=42.54 Aligned_cols=44 Identities=30% Similarity=0.290 Sum_probs=36.8
Q ss_pred CCCCCCeEEEECCCc-ccchHHHHhc-CC-EEEEEeCCHHHHHHHHH
Q 020710 145 GSLKGIAVCDAGCGT-GSLAIPLAKQ-GA-IVSASDISAAMVAEARK 188 (322)
Q Consensus 145 ~~~~~~~VLDvGcG~-G~~~~~la~~-~~-~v~gvD~s~~~l~~a~~ 188 (322)
+..++.+||-+|||. |.++..+++. |+ +|+++|.+++.++.+++
T Consensus 182 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~ 228 (398)
T 2dph_A 182 GVKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSD 228 (398)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHT
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH
Confidence 345788999999986 8888888876 88 89999999998887754
|
| >1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=89.15 E-value=2.8 Score=35.29 Aligned_cols=72 Identities=19% Similarity=0.195 Sum_probs=48.5
Q ss_pred CCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC---------
Q 020710 149 GIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL--------- 216 (322)
Q Consensus 149 ~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--------- 216 (322)
++++|=.|++.|. .+..|++.|++|+.+|.+++.++...+.+...+.. +.++.+|+.+.
T Consensus 2 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~---------~~~~~~D~~~~~~v~~~~~~ 72 (256)
T 1geg_A 2 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAGGH---------AVAVKVDVSDRDQVFAAVEQ 72 (256)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCC---------EEEEECCTTSHHHHHHHHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCc---------EEEEEecCCCHHHHHHHHHH
Confidence 3567878876553 34455667999999999987766655554433221 16788888764
Q ss_pred ----CCCccEEEEcccc
Q 020710 217 ----DGKYDTVVCLDVL 229 (322)
Q Consensus 217 ----~~~fD~V~~~~~l 229 (322)
-+..|+++.+..+
T Consensus 73 ~~~~~g~id~lv~nAg~ 89 (256)
T 1geg_A 73 ARKTLGGFDVIVNNAGV 89 (256)
T ss_dssp HHHHTTCCCEEEECCCC
T ss_pred HHHHhCCCCEEEECCCC
Confidence 2589999987754
|
| >3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A* | Back alignment and structure |
|---|
Probab=88.99 E-value=2 Score=36.54 Aligned_cols=76 Identities=14% Similarity=0.010 Sum_probs=53.8
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
.++++|=.|++.|. .+..|++.|++|+.+|.+++.++...+.+.......+ +.++..|+.+.
T Consensus 7 ~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~-------~~~~~~Dv~~~~~v~~~~~ 79 (265)
T 3lf2_A 7 SEAVAVVTGGSSGIGLATVELLLEAGAAVAFCARDGERLRAAESALRQRFPGAR-------LFASVCDVLDALQVRAFAE 79 (265)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSTTCC-------EEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCce-------EEEEeCCCCCHHHHHHHHH
Confidence 46788988887764 3555667799999999999887777666554211111 27788888764
Q ss_pred -----CCCccEEEEccccc
Q 020710 217 -----DGKYDTVVCLDVLI 230 (322)
Q Consensus 217 -----~~~fD~V~~~~~l~ 230 (322)
-+..|+++.+..+.
T Consensus 80 ~~~~~~g~id~lvnnAg~~ 98 (265)
T 3lf2_A 80 ACERTLGCASILVNNAGQG 98 (265)
T ss_dssp HHHHHHCSCSEEEECCCCC
T ss_pred HHHHHcCCCCEEEECCCCC
Confidence 26899999887654
|
| >3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=88.99 E-value=1.4 Score=37.73 Aligned_cols=74 Identities=18% Similarity=0.191 Sum_probs=52.9
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
.++++|=.|++.|. .+..|++.|++|+.+|.++..++...+.+...+... .++..|+.+.
T Consensus 27 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~---------~~~~~Dv~d~~~v~~~~~ 97 (270)
T 3ftp_A 27 DKQVAIVTGASRGIGRAIALELARRGAMVIGTATTEAGAEGIGAAFKQAGLEG---------RGAVLNVNDATAVDALVE 97 (270)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHTCCC---------EEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcE---------EEEEEeCCCHHHHHHHHH
Confidence 46678877876654 345566679999999999988777766665544322 7788888764
Q ss_pred -----CCCccEEEEccccc
Q 020710 217 -----DGKYDTVVCLDVLI 230 (322)
Q Consensus 217 -----~~~fD~V~~~~~l~ 230 (322)
-+..|+++.+..+.
T Consensus 98 ~~~~~~g~iD~lvnnAg~~ 116 (270)
T 3ftp_A 98 STLKEFGALNVLVNNAGIT 116 (270)
T ss_dssp HHHHHHSCCCEEEECCCCC
T ss_pred HHHHHcCCCCEEEECCCCC
Confidence 25899999887653
|
| >2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=88.98 E-value=2.1 Score=35.67 Aligned_cols=72 Identities=19% Similarity=0.163 Sum_probs=46.6
Q ss_pred CCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHh-HHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 149 GIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKA-EEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 149 ~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~-~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
+++||=.|++.|. .+..|+++|++|+.+|.++..++...+.. ...+.. +.++.+|+.+.
T Consensus 2 ~k~vlItGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~---------~~~~~~D~~~~~~~~~~~~ 72 (250)
T 2cfc_A 2 SRVAIVTGASSGNGLAIATRFLARGDRVAALDLSAETLEETARTHWHAYADK---------VLRVRADVADEGDVNAAIA 72 (250)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHSTTTGGG---------EEEEECCTTCHHHHHHHHH
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCc---------EEEEEecCCCHHHHHHHHH
Confidence 4568888866443 33445566999999999987666554433 211211 27788888764
Q ss_pred -----CCCccEEEEcccc
Q 020710 217 -----DGKYDTVVCLDVL 229 (322)
Q Consensus 217 -----~~~fD~V~~~~~l 229 (322)
-+..|+|+.+...
T Consensus 73 ~~~~~~~~id~li~~Ag~ 90 (250)
T 2cfc_A 73 ATMEQFGAIDVLVNNAGI 90 (250)
T ss_dssp HHHHHHSCCCEEEECCCC
T ss_pred HHHHHhCCCCEEEECCCC
Confidence 1479999987754
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=88.98 E-value=1.5 Score=32.93 Aligned_cols=62 Identities=15% Similarity=0.102 Sum_probs=37.8
Q ss_pred CCeEEEECCCcccchHHH----HhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-------C
Q 020710 149 GIAVCDAGCGTGSLAIPL----AKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------D 217 (322)
Q Consensus 149 ~~~VLDvGcG~G~~~~~l----a~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------~ 217 (322)
..+|+=+||| ..+..+ .+.|.+|+.+|.+++.++.+++ .+. .++.+|..+. .
T Consensus 6 ~~~v~I~G~G--~iG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~----~~~-----------~~~~~d~~~~~~l~~~~~ 68 (144)
T 2hmt_A 6 NKQFAVIGLG--RFGGSIVKELHRMGHEVLAVDINEEKVNAYAS----YAT-----------HAVIANATEENELLSLGI 68 (144)
T ss_dssp CCSEEEECCS--HHHHHHHHHHHHTTCCCEEEESCHHHHHTTTT----TCS-----------EEEECCTTCHHHHHTTTG
T ss_pred CCcEEEECCC--HHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH----hCC-----------EEEEeCCCCHHHHHhcCC
Confidence 5679999985 444443 3448899999998765543321 111 4455565432 2
Q ss_pred CCccEEEEcc
Q 020710 218 GKYDTVVCLD 227 (322)
Q Consensus 218 ~~fD~V~~~~ 227 (322)
+.+|+|+.+.
T Consensus 69 ~~~d~vi~~~ 78 (144)
T 2hmt_A 69 RNFEYVIVAI 78 (144)
T ss_dssp GGCSEEEECC
T ss_pred CCCCEEEECC
Confidence 4689998653
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=88.96 E-value=1.3 Score=39.16 Aligned_cols=42 Identities=24% Similarity=0.178 Sum_probs=33.9
Q ss_pred CCCCCCeEEEECC--CcccchHHHHhc-CCEEEEEeCCHHHHHHH
Q 020710 145 GSLKGIAVCDAGC--GTGSLAIPLAKQ-GAIVSASDISAAMVAEA 186 (322)
Q Consensus 145 ~~~~~~~VLDvGc--G~G~~~~~la~~-~~~v~gvD~s~~~l~~a 186 (322)
...++.+||-.|| |.|..+..+++. |++|+++|.+++.++.+
T Consensus 146 ~~~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~ 190 (336)
T 4b7c_A 146 QPKNGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCRFL 190 (336)
T ss_dssp CCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHH
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 3467889999998 467777777765 99999999999877766
|
| >4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A | Back alignment and structure |
|---|
Probab=88.92 E-value=2.1 Score=36.17 Aligned_cols=71 Identities=23% Similarity=0.250 Sum_probs=49.8
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
.++++|=.|++.|. .+..|+++|++|+.+|.+++.++...+... .. +.++.+|+.+.
T Consensus 7 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~---~~---------~~~~~~D~~~~~~v~~~~~ 74 (259)
T 4e6p_A 7 EGKSALITGSARGIGRAFAEAYVREGATVAIADIDIERARQAAAEIG---PA---------AYAVQMDVTRQDSIDAAIA 74 (259)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC---TT---------EEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC---CC---------ceEEEeeCCCHHHHHHHHH
Confidence 46789988877654 345566779999999999876665544331 11 16788888764
Q ss_pred -----CCCccEEEEccccc
Q 020710 217 -----DGKYDTVVCLDVLI 230 (322)
Q Consensus 217 -----~~~fD~V~~~~~l~ 230 (322)
-+..|+++.+..+.
T Consensus 75 ~~~~~~g~id~lv~~Ag~~ 93 (259)
T 4e6p_A 75 ATVEHAGGLDILVNNAALF 93 (259)
T ss_dssp HHHHHSSSCCEEEECCCCC
T ss_pred HHHHHcCCCCEEEECCCcC
Confidence 35899999887653
|
| >3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E | Back alignment and structure |
|---|
Probab=88.84 E-value=2 Score=36.05 Aligned_cols=71 Identities=20% Similarity=0.150 Sum_probs=50.4
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
.++++|=.|++.|. .+..|++.|++|+.+|.+++.++...+..... . .++..|+.+.
T Consensus 8 ~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~---~---------~~~~~Dv~d~~~v~~~~~ 75 (248)
T 3op4_A 8 EGKVALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAISDYLGDN---G---------KGMALNVTNPESIEAVLK 75 (248)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGGG---E---------EEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccc---c---------eEEEEeCCCHHHHHHHHH
Confidence 46788888887664 34556677999999999988776655544321 1 6778888764
Q ss_pred -----CCCccEEEEccccc
Q 020710 217 -----DGKYDTVVCLDVLI 230 (322)
Q Consensus 217 -----~~~fD~V~~~~~l~ 230 (322)
-+..|+++.+..+.
T Consensus 76 ~~~~~~g~iD~lv~nAg~~ 94 (248)
T 3op4_A 76 AITDEFGGVDILVNNAGIT 94 (248)
T ss_dssp HHHHHHCCCSEEEECCCCC
T ss_pred HHHHHcCCCCEEEECCCCC
Confidence 25899999887654
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A | Back alignment and structure |
|---|
Probab=88.74 E-value=1.9 Score=36.45 Aligned_cols=72 Identities=18% Similarity=0.087 Sum_probs=51.2
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
+++++|=.|++.|. .+..|++.|++|+.+|.+++.++...+.. +.. +.++..|+.+.
T Consensus 7 ~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~---~~~---------~~~~~~Dv~~~~~v~~~~~ 74 (255)
T 4eso_A 7 QGKKAIVIGGTHGMGLATVRRLVEGGAEVLLTGRNESNIARIREEF---GPR---------VHALRSDIADLNEIAVLGA 74 (255)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH---GGG---------EEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---CCc---------ceEEEccCCCHHHHHHHHH
Confidence 46789988887664 34556667999999999988776655543 111 17888898765
Q ss_pred -----CCCccEEEEcccccc
Q 020710 217 -----DGKYDTVVCLDVLIH 231 (322)
Q Consensus 217 -----~~~fD~V~~~~~l~~ 231 (322)
.+..|+++.+..+..
T Consensus 75 ~~~~~~g~id~lv~nAg~~~ 94 (255)
T 4eso_A 75 AAGQTLGAIDLLHINAGVSE 94 (255)
T ss_dssp HHHHHHSSEEEEEECCCCCC
T ss_pred HHHHHhCCCCEEEECCCCCC
Confidence 258999998766543
|
| >3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A* | Back alignment and structure |
|---|
Probab=88.70 E-value=2.5 Score=35.75 Aligned_cols=74 Identities=20% Similarity=0.122 Sum_probs=50.0
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHh-hhccCCCCCCCCCceEEcccccC-------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEE-LLADNGGEAPVMPKFEVKDLESL------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~-~~~~~~~~~~~~~~~~~~d~~~~------- 216 (322)
+++++|=.|++.|. .+..|++.|++|+.+|.+++.++...+.+... +.. +.++.+|+.+.
T Consensus 6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~---------~~~~~~D~~~~~~~~~~~ 76 (263)
T 3ai3_A 6 SGKVAVITGSSSGIGLAIAEGFAKEGAHIVLVARQVDRLHEAARSLKEKFGVR---------VLEVAVDVATPEGVDAVV 76 (263)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCC---------EEEEECCTTSHHHHHHHH
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHHhcCCc---------eEEEEcCCCCHHHHHHHH
Confidence 46788888877553 34455667999999999987766555444332 211 16788888764
Q ss_pred ------CCCccEEEEccccc
Q 020710 217 ------DGKYDTVVCLDVLI 230 (322)
Q Consensus 217 ------~~~fD~V~~~~~l~ 230 (322)
-+..|+++.+..+.
T Consensus 77 ~~~~~~~g~id~lv~~Ag~~ 96 (263)
T 3ai3_A 77 ESVRSSFGGADILVNNAGTG 96 (263)
T ss_dssp HHHHHHHSSCSEEEECCCCC
T ss_pred HHHHHHcCCCCEEEECCCCC
Confidence 15799999887653
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=88.67 E-value=1.6 Score=36.92 Aligned_cols=76 Identities=29% Similarity=0.219 Sum_probs=53.9
Q ss_pred CCCeEEEECC-Cccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-------
Q 020710 148 KGIAVCDAGC-GTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL------- 216 (322)
Q Consensus 148 ~~~~VLDvGc-G~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~------- 216 (322)
.+++||=.|+ |.|. ++..|+++|++|+.+|.++..++...+.+...+. . .+.++.+|+.+.
T Consensus 21 ~~k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~-~-------~~~~~~~Dl~~~~~v~~~~ 92 (266)
T 3o38_A 21 KGKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHERRLGETRDQLADLGL-G-------RVEAVVCDVTSTEAVDALI 92 (266)
T ss_dssp TTCEEEESSCSSSSHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTCS-S-------CEEEEECCTTCHHHHHHHH
T ss_pred CCCEEEEECCCCCchHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcCC-C-------ceEEEEeCCCCHHHHHHHH
Confidence 4678998887 5443 4556677799999999998887777666644321 1 137888998774
Q ss_pred ------CCCccEEEEcccccc
Q 020710 217 ------DGKYDTVVCLDVLIH 231 (322)
Q Consensus 217 ------~~~fD~V~~~~~l~~ 231 (322)
.+..|+++.+..+..
T Consensus 93 ~~~~~~~g~id~li~~Ag~~~ 113 (266)
T 3o38_A 93 TQTVEKAGRLDVLVNNAGLGG 113 (266)
T ss_dssp HHHHHHHSCCCEEEECCCCCC
T ss_pred HHHHHHhCCCcEEEECCCcCC
Confidence 258999998876543
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=88.63 E-value=1.3 Score=39.63 Aligned_cols=45 Identities=24% Similarity=0.200 Sum_probs=36.1
Q ss_pred CCCCCCeEEEECCCc-ccchHHHHhc-CCEEEEEeCCHHHHHHHHHH
Q 020710 145 GSLKGIAVCDAGCGT-GSLAIPLAKQ-GAIVSASDISAAMVAEARKK 189 (322)
Q Consensus 145 ~~~~~~~VLDvGcG~-G~~~~~la~~-~~~v~gvD~s~~~l~~a~~~ 189 (322)
...++.+||-+|+|. |..+..+++. |++|+++|.+++.++.+++.
T Consensus 186 ~~~~g~~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~l 232 (363)
T 3uog_A 186 HLRAGDRVVVQGTGGVALFGLQIAKATGAEVIVTSSSREKLDRAFAL 232 (363)
T ss_dssp CCCTTCEEEEESSBHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCchhHHHHHHc
Confidence 356788999999875 7777777766 99999999999888877653
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=88.62 E-value=5.4 Score=33.58 Aligned_cols=75 Identities=12% Similarity=0.038 Sum_probs=51.2
Q ss_pred CCCeEEEECCC--ccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC------
Q 020710 148 KGIAVCDAGCG--TGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL------ 216 (322)
Q Consensus 148 ~~~~VLDvGcG--~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~------ 216 (322)
.++++|=.|++ .|. ++..|++.|++|+.++.++...+...+.....+.. + +.++.+|+.+.
T Consensus 6 ~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-~-------~~~~~~D~~~~~~v~~~ 77 (266)
T 3oig_A 6 EGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGERLEKSVHELAGTLDRN-D-------SIILPCDVTNDAEIETC 77 (266)
T ss_dssp TTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHTSSSC-C-------CEEEECCCSSSHHHHHH
T ss_pred CCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCchHHHHHHHHHHHhcCCC-C-------ceEEeCCCCCHHHHHHH
Confidence 46789999976 233 45666777999999998876555555544433211 1 38889998775
Q ss_pred -------CCCccEEEEccccc
Q 020710 217 -------DGKYDTVVCLDVLI 230 (322)
Q Consensus 217 -------~~~fD~V~~~~~l~ 230 (322)
.+..|+++.+..+.
T Consensus 78 ~~~~~~~~g~id~li~~Ag~~ 98 (266)
T 3oig_A 78 FASIKEQVGVIHGIAHCIAFA 98 (266)
T ss_dssp HHHHHHHHSCCCEEEECCCCC
T ss_pred HHHHHHHhCCeeEEEEccccc
Confidence 25899999876654
|
| >4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A* | Back alignment and structure |
|---|
Probab=88.61 E-value=2.3 Score=36.32 Aligned_cols=73 Identities=16% Similarity=0.088 Sum_probs=51.3
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHh-hhccCCCCCCCCCceEEcccccC-------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEE-LLADNGGEAPVMPKFEVKDLESL------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~-~~~~~~~~~~~~~~~~~~d~~~~------- 216 (322)
+++++|=.|++.|. .+..|++.|++|+.+|.+...++...+.+... +.. +.++.+|+.+.
T Consensus 26 ~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~---------~~~~~~Dv~~~~~v~~~~ 96 (277)
T 4fc7_A 26 RDKVAFITGGGSGIGFRIAEIFMRHGCHTVIASRSLPRVLTAARKLAGATGRR---------CLPLSMDVRAPPAVMAAV 96 (277)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHHSSC---------EEEEECCTTCHHHHHHHH
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCc---------EEEEEcCCCCHHHHHHHH
Confidence 46789988887664 34556667999999999987766655554332 211 27888898764
Q ss_pred ------CCCccEEEEcccc
Q 020710 217 ------DGKYDTVVCLDVL 229 (322)
Q Consensus 217 ------~~~fD~V~~~~~l 229 (322)
-+..|+++.+..+
T Consensus 97 ~~~~~~~g~id~lv~nAg~ 115 (277)
T 4fc7_A 97 DQALKEFGRIDILINCAAG 115 (277)
T ss_dssp HHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHcCCCCEEEECCcC
Confidence 2589999988764
|
| >2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=88.58 E-value=1.7 Score=37.26 Aligned_cols=86 Identities=17% Similarity=0.162 Sum_probs=54.2
Q ss_pred eEEEECCCc-c-cchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccCCCCccEEEEccc
Q 020710 151 AVCDAGCGT-G-SLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESLDGKYDTVVCLDV 228 (322)
Q Consensus 151 ~VLDvGcG~-G-~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~fD~V~~~~~ 228 (322)
+|.=||||. | .++..|.+.|.+|+++|.+++.++.+.+ .+.. .....|..+. ...|+|+.
T Consensus 2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~----~g~~----------~~~~~~~~~~-~~~D~vi~--- 63 (279)
T 2f1k_A 2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVE----RQLV----------DEAGQDLSLL-QTAKIIFL--- 63 (279)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH----TTSC----------SEEESCGGGG-TTCSEEEE---
T ss_pred EEEEEcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHh----CCCC----------ccccCCHHHh-CCCCEEEE---
Confidence 577889884 2 2345556668899999999887765532 2221 1123455555 67899986
Q ss_pred ccccCcchHHHHHHHHHhccC-CeEEEEE
Q 020710 229 LIHYPQSKADGMIAHLASLAE-KRLILSF 256 (322)
Q Consensus 229 l~~~~~~~~~~~l~~l~~~~~-~~~il~~ 256 (322)
.+|......+++.+...++ +..++.+
T Consensus 64 --av~~~~~~~~~~~l~~~~~~~~~vv~~ 90 (279)
T 2f1k_A 64 --CTPIQLILPTLEKLIPHLSPTAIVTDV 90 (279)
T ss_dssp --CSCHHHHHHHHHHHGGGSCTTCEEEEC
T ss_pred --ECCHHHHHHHHHHHHhhCCCCCEEEEC
Confidence 3454446678888876554 4455554
|
| >3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A* | Back alignment and structure |
|---|
Probab=88.56 E-value=3.7 Score=35.47 Aligned_cols=73 Identities=21% Similarity=0.039 Sum_probs=50.6
Q ss_pred CCCeEEEECCCcc----c-chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC------
Q 020710 148 KGIAVCDAGCGTG----S-LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL------ 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G----~-~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~------ 216 (322)
.++++|=.|++.| . .+..|++.|++|+.++.++...+..++.....+ . +.++.+|+.+.
T Consensus 30 ~gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~-~---------~~~~~~Dv~d~~~v~~~ 99 (293)
T 3grk_A 30 QGKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQGDALKKRVEPLAEELG-A---------FVAGHCDVADAASIDAV 99 (293)
T ss_dssp TTCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHHHHHHT-C---------EEEEECCTTCHHHHHHH
T ss_pred CCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC-C---------ceEEECCCCCHHHHHHH
Confidence 4778999997633 2 456667779999999998765555544443332 1 16788898764
Q ss_pred -------CCCccEEEEccccc
Q 020710 217 -------DGKYDTVVCLDVLI 230 (322)
Q Consensus 217 -------~~~fD~V~~~~~l~ 230 (322)
-+..|+++.+..+.
T Consensus 100 ~~~~~~~~g~iD~lVnnAG~~ 120 (293)
T 3grk_A 100 FETLEKKWGKLDFLVHAIGFS 120 (293)
T ss_dssp HHHHHHHTSCCSEEEECCCCC
T ss_pred HHHHHHhcCCCCEEEECCccC
Confidence 26899999887654
|
| >3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A* | Back alignment and structure |
|---|
Probab=88.49 E-value=2.2 Score=35.33 Aligned_cols=74 Identities=19% Similarity=0.132 Sum_probs=51.3
Q ss_pred CCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhH-HhhhccCCCCCCCCCceEEcccccC--------
Q 020710 149 GIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAE-EELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 149 ~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~-~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
++++|=.|++.|. ++..|++.|++|+.++.+++-++...+.+. ..+.. +.++.+|+.+.
T Consensus 2 ~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~---------~~~~~~D~~~~~~v~~~~~ 72 (235)
T 3l77_A 2 MKVAVITGASRGIGEAIARALARDGYALALGARSVDRLEKIAHELMQEQGVE---------VFYHHLDVSKAESVEEFSK 72 (235)
T ss_dssp CCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCC---------EEEEECCTTCHHHHHHHCC
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCe---------EEEEEeccCCHHHHHHHHH
Confidence 4578888876553 345566679999999999887776665554 22221 27788898764
Q ss_pred -----CCCccEEEEcccccc
Q 020710 217 -----DGKYDTVVCLDVLIH 231 (322)
Q Consensus 217 -----~~~fD~V~~~~~l~~ 231 (322)
-+..|+++.+..+.+
T Consensus 73 ~~~~~~g~id~li~~Ag~~~ 92 (235)
T 3l77_A 73 KVLERFGDVDVVVANAGLGY 92 (235)
T ss_dssp -HHHHHSSCSEEEECCCCCC
T ss_pred HHHHhcCCCCEEEECCcccc
Confidence 158999998876644
|
| >3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis} | Back alignment and structure |
|---|
Probab=88.46 E-value=2 Score=36.63 Aligned_cols=74 Identities=20% Similarity=0.091 Sum_probs=47.1
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
.+++||=.|++.|. ++..|+++|++|+.+|.++...+...+.....+.. +.++.+|+.+.
T Consensus 33 ~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~---------~~~~~~Dl~~~~~~~~~~~ 103 (279)
T 3ctm_A 33 KGKVASVTGSSGGIGWAVAEAYAQAGADVAIWYNSHPADEKAEHLQKTYGVH---------SKAYKCNISDPKSVEETIS 103 (279)
T ss_dssp TTCEEEETTTTSSHHHHHHHHHHHHTCEEEEEESSSCCHHHHHHHHHHHCSC---------EEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCc---------ceEEEeecCCHHHHHHHHH
Confidence 36678887765443 33445556999999998865554444443332221 26788888764
Q ss_pred -----CCCccEEEEccccc
Q 020710 217 -----DGKYDTVVCLDVLI 230 (322)
Q Consensus 217 -----~~~fD~V~~~~~l~ 230 (322)
-+..|+|+.+..+.
T Consensus 104 ~~~~~~g~id~li~~Ag~~ 122 (279)
T 3ctm_A 104 QQEKDFGTIDVFVANAGVT 122 (279)
T ss_dssp HHHHHHSCCSEEEECGGGS
T ss_pred HHHHHhCCCCEEEECCccc
Confidence 14699999877654
|
| >3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=88.43 E-value=1.8 Score=36.44 Aligned_cols=76 Identities=17% Similarity=0.124 Sum_probs=54.1
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhc-cCCCCCCCCCceEEcccccC-------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLA-DNGGEAPVMPKFEVKDLESL------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~-~~~~~~~~~~~~~~~d~~~~------- 216 (322)
.++++|=.|++.|. .+..|++.|++|+.+|.+++.++...+.+...... .+ +.++..|+.+.
T Consensus 6 ~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~-------~~~~~~Dv~~~~~v~~~~ 78 (250)
T 3nyw_A 6 QKGLAIITGASQGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIMRSNKHVQE-------PIVLPLDITDCTKADTEI 78 (250)
T ss_dssp CCCEEEEESTTSHHHHHHHHHHHHHTCEEEEEESCHHHHHHHHHHHHHHCTTSCC-------CEEEECCTTCHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhccccCc-------ceEEeccCCCHHHHHHHH
Confidence 46788888887664 34556666999999999998887776666543211 11 27888898774
Q ss_pred ------CCCccEEEEccccc
Q 020710 217 ------DGKYDTVVCLDVLI 230 (322)
Q Consensus 217 ------~~~fD~V~~~~~l~ 230 (322)
-+..|+++.+..+.
T Consensus 79 ~~~~~~~g~iD~lvnnAg~~ 98 (250)
T 3nyw_A 79 KDIHQKYGAVDILVNAAAMF 98 (250)
T ss_dssp HHHHHHHCCEEEEEECCCCC
T ss_pred HHHHHhcCCCCEEEECCCcC
Confidence 26899999887653
|
| >3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=88.38 E-value=1.8 Score=36.23 Aligned_cols=73 Identities=23% Similarity=0.275 Sum_probs=49.3
Q ss_pred CCCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-------
Q 020710 147 LKGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL------- 216 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~------- 216 (322)
.++++||=.|++.|. ++..|++.|++|+.+|.++..++...+.... + +.+...|+.+.
T Consensus 12 ~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-----~-------~~~~~~D~~~~~~~~~~~ 79 (249)
T 3f9i_A 12 LTGKTSLITGASSGIGSAIARLLHKLGSKVIISGSNEEKLKSLGNALKD-----N-------YTIEVCNLANKEECSNLI 79 (249)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCS-----S-------EEEEECCTTSHHHHHHHH
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhcc-----C-------ccEEEcCCCCHHHHHHHH
Confidence 457789988887654 3455666799999999998877665444321 1 16778887664
Q ss_pred --CCCccEEEEcccccc
Q 020710 217 --DGKYDTVVCLDVLIH 231 (322)
Q Consensus 217 --~~~fD~V~~~~~l~~ 231 (322)
.+..|+++.+..+..
T Consensus 80 ~~~~~id~li~~Ag~~~ 96 (249)
T 3f9i_A 80 SKTSNLDILVCNAGITS 96 (249)
T ss_dssp HTCSCCSEEEECCC---
T ss_pred HhcCCCCEEEECCCCCC
Confidence 357999998876543
|
| >2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A* | Back alignment and structure |
|---|
Probab=88.36 E-value=2.3 Score=35.86 Aligned_cols=73 Identities=21% Similarity=0.142 Sum_probs=48.8
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
.+++||=.|++.|. .+..|++.|++|+.+|.+++.++...+.+...+.. +.++.+|+.+.
T Consensus 13 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~---------~~~~~~D~~~~~~~~~~~~ 83 (260)
T 2zat_A 13 ENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQGEGLS---------VTGTVCHVGKAEDRERLVA 83 (260)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCC---------EEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCc---------eEEEEccCCCHHHHHHHHH
Confidence 35678877776553 33445566999999999987766555554433321 16777887654
Q ss_pred -----CCCccEEEEcccc
Q 020710 217 -----DGKYDTVVCLDVL 229 (322)
Q Consensus 217 -----~~~fD~V~~~~~l 229 (322)
-+..|+++.+..+
T Consensus 84 ~~~~~~g~iD~lv~~Ag~ 101 (260)
T 2zat_A 84 MAVNLHGGVDILVSNAAV 101 (260)
T ss_dssp HHHHHHSCCCEEEECCCC
T ss_pred HHHHHcCCCCEEEECCCC
Confidence 2579999987664
|
| >3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=88.35 E-value=2.4 Score=35.77 Aligned_cols=75 Identities=16% Similarity=0.007 Sum_probs=50.3
Q ss_pred CCCCeEEEECCC-cccc----hHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-----
Q 020710 147 LKGIAVCDAGCG-TGSL----AIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL----- 216 (322)
Q Consensus 147 ~~~~~VLDvGcG-~G~~----~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~----- 216 (322)
.++++||=.|++ +|.+ +..|++.|++|+.++.+....+..++.....+. +.++.+|+.+.
T Consensus 12 ~~~k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~----------~~~~~~Dv~~~~~v~~ 81 (271)
T 3ek2_A 12 LDGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEFGS----------ELVFPCDVADDAQIDA 81 (271)
T ss_dssp TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHTTC----------CCEEECCTTCHHHHHH
T ss_pred cCCCEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEEecchhhHHHHHHHHHHcCC----------cEEEECCCCCHHHHHH
Confidence 357889999975 2333 344556699999999886555554444333321 27889998775
Q ss_pred --------CCCccEEEEcccccc
Q 020710 217 --------DGKYDTVVCLDVLIH 231 (322)
Q Consensus 217 --------~~~fD~V~~~~~l~~ 231 (322)
-+..|+++.+..+.+
T Consensus 82 ~~~~~~~~~g~id~lv~nAg~~~ 104 (271)
T 3ek2_A 82 LFASLKTHWDSLDGLVHSIGFAP 104 (271)
T ss_dssp HHHHHHHHCSCEEEEEECCCCCC
T ss_pred HHHHHHHHcCCCCEEEECCccCc
Confidence 368999998876543
|
| >3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=88.30 E-value=1.9 Score=36.71 Aligned_cols=77 Identities=22% Similarity=0.157 Sum_probs=52.6
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
.++++|=.|++.|. .+..|++.|++|+.+|.+++.++...+.+.......+ +.++..|+.+.
T Consensus 9 ~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~-------~~~~~~D~~~~~~~~~~~~ 81 (267)
T 3t4x_A 9 KGKTALVTGSTAGIGKAIATSLVAEGANVLINGRREENVNETIKEIRAQYPDAI-------LQPVVADLGTEQGCQDVIE 81 (267)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHCTTCE-------EEEEECCTTSHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhCCCce-------EEEEecCCCCHHHHHHHHH
Confidence 46788888876654 3455666799999999998877776666554322111 16777887664
Q ss_pred -CCCccEEEEcccccc
Q 020710 217 -DGKYDTVVCLDVLIH 231 (322)
Q Consensus 217 -~~~fD~V~~~~~l~~ 231 (322)
-+..|+++.+..+.+
T Consensus 82 ~~g~id~lv~nAg~~~ 97 (267)
T 3t4x_A 82 KYPKVDILINNLGIFE 97 (267)
T ss_dssp HCCCCSEEEECCCCCC
T ss_pred hcCCCCEEEECCCCCC
Confidence 368999998776543
|
| >3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A* | Back alignment and structure |
|---|
Probab=88.09 E-value=5.5 Score=33.27 Aligned_cols=71 Identities=25% Similarity=0.263 Sum_probs=50.1
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
.++++|=.|++.|. .+..|++.|++|+.+|.+++.++...+.. +.. +.++..|+.+.
T Consensus 5 ~gk~vlVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~---~~~---------~~~~~~Dv~~~~~v~~~~~ 72 (247)
T 3rwb_A 5 AGKTALVTGAAQGIGKAIAARLAADGATVIVSDINAEGAKAAAASI---GKK---------ARAIAADISDPGSVKALFA 72 (247)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHH---CTT---------EEECCCCTTCHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---CCc---------eEEEEcCCCCHHHHHHHHH
Confidence 46789988887664 45556677999999999987766554443 111 16777887664
Q ss_pred -----CCCccEEEEccccc
Q 020710 217 -----DGKYDTVVCLDVLI 230 (322)
Q Consensus 217 -----~~~fD~V~~~~~l~ 230 (322)
.+..|+++.+..+.
T Consensus 73 ~~~~~~g~id~lv~nAg~~ 91 (247)
T 3rwb_A 73 EIQALTGGIDILVNNASIV 91 (247)
T ss_dssp HHHHHHSCCSEEEECCCCC
T ss_pred HHHHHCCCCCEEEECCCCC
Confidence 25899999877654
|
| >1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* | Back alignment and structure |
|---|
Probab=88.08 E-value=3.7 Score=35.63 Aligned_cols=42 Identities=26% Similarity=0.282 Sum_probs=32.6
Q ss_pred CCeEEEECCCc-cc-chHHHHhcCCEEEEEeCCHHHHHHHHHHh
Q 020710 149 GIAVCDAGCGT-GS-LAIPLAKQGAIVSASDISAAMVAEARKKA 190 (322)
Q Consensus 149 ~~~VLDvGcG~-G~-~~~~la~~~~~v~gvD~s~~~l~~a~~~~ 190 (322)
..+|.=||+|. |. ++..+++.|.+|+.+|.+++.++.+++..
T Consensus 15 ~~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~i 58 (302)
T 1f0y_A 15 VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGI 58 (302)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHH
Confidence 35799999985 32 55667777999999999999888775543
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=88.07 E-value=1.3 Score=39.19 Aligned_cols=43 Identities=28% Similarity=0.237 Sum_probs=34.4
Q ss_pred CCCCCeEEEECC--CcccchHHHHhc-CCEEEEEeCCHHHHHHHHH
Q 020710 146 SLKGIAVCDAGC--GTGSLAIPLAKQ-GAIVSASDISAAMVAEARK 188 (322)
Q Consensus 146 ~~~~~~VLDvGc--G~G~~~~~la~~-~~~v~gvD~s~~~l~~a~~ 188 (322)
..++.+||-.|| |.|..+..+++. |++|+++|.+++.++.+++
T Consensus 153 ~~~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~ 198 (345)
T 2j3h_A 153 PKEGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLLKT 198 (345)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 457889999997 567777777764 9999999999988777653
|
| >3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=88.04 E-value=2.1 Score=36.20 Aligned_cols=73 Identities=23% Similarity=0.137 Sum_probs=50.5
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEE-eCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSAS-DISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gv-D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~------- 216 (322)
.++++|=.|++.|. .+..|+++|++|+.+ +.+....+...+.....+.. +.++.+|+.+.
T Consensus 7 ~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~Dv~~~~~v~~~~ 77 (259)
T 3edm_A 7 TNRTIVVAGAGRDIGRACAIRFAQEGANVVLTYNGAAEGAATAVAEIEKLGRS---------ALAIKADLTNAAEVEAAI 77 (259)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHTTTSC---------CEEEECCTTCHHHHHHHH
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCc---------eEEEEcCCCCHHHHHHHH
Confidence 46789988987764 455566779999888 66666666555555443322 27888998774
Q ss_pred ------CCCccEEEEcccc
Q 020710 217 ------DGKYDTVVCLDVL 229 (322)
Q Consensus 217 ------~~~fD~V~~~~~l 229 (322)
-+..|+++.+...
T Consensus 78 ~~~~~~~g~id~lv~nAg~ 96 (259)
T 3edm_A 78 SAAADKFGEIHGLVHVAGG 96 (259)
T ss_dssp HHHHHHHCSEEEEEECCCC
T ss_pred HHHHHHhCCCCEEEECCCc
Confidence 2589999987654
|
| >4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=87.85 E-value=1.1 Score=38.40 Aligned_cols=73 Identities=19% Similarity=0.125 Sum_probs=52.3
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
.++++|=.|++.|. .+..|++.|++|+.+|.+++.++...+.+...+... .++.+|+.+.
T Consensus 32 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~---------~~~~~Dv~~~~~~~~~~~ 102 (275)
T 4imr_A 32 RGRTALVTGSSRGIGAAIAEGLAGAGAHVILHGVKPGSTAAVQQRIIASGGTA---------QELAGDLSEAGAGTDLIE 102 (275)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSTTTTHHHHHHHHHTTCCE---------EEEECCTTSTTHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCeE---------EEEEecCCCHHHHHHHHH
Confidence 46788888877654 345566679999999999877776666655443222 7888888765
Q ss_pred ----CCCccEEEEcccc
Q 020710 217 ----DGKYDTVVCLDVL 229 (322)
Q Consensus 217 ----~~~fD~V~~~~~l 229 (322)
.+..|+++.+..+
T Consensus 103 ~~~~~g~iD~lvnnAg~ 119 (275)
T 4imr_A 103 RAEAIAPVDILVINASA 119 (275)
T ss_dssp HHHHHSCCCEEEECCCC
T ss_pred HHHHhCCCCEEEECCCC
Confidence 2589999987765
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=87.73 E-value=2 Score=33.16 Aligned_cols=39 Identities=28% Similarity=0.303 Sum_probs=26.9
Q ss_pred CCCCeEEEECCCc-ccc-hHHHHhcCCEEEEEeCCHHHHHH
Q 020710 147 LKGIAVCDAGCGT-GSL-AIPLAKQGAIVSASDISAAMVAE 185 (322)
Q Consensus 147 ~~~~~VLDvGcG~-G~~-~~~la~~~~~v~gvD~s~~~l~~ 185 (322)
.++.+|+=+|||. |.. +..|.+.|.+|+++|.+++.++.
T Consensus 17 ~~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~~~~~ 57 (155)
T 2g1u_A 17 QKSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEYAFHR 57 (155)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGGGG
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHH
Confidence 3577999999864 332 23344558999999999865443
|
| >4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A* | Back alignment and structure |
|---|
Probab=87.70 E-value=2.7 Score=35.79 Aligned_cols=74 Identities=20% Similarity=0.118 Sum_probs=50.9
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeC-CHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDI-SAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~-s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~------- 216 (322)
.++++|=.|++.|. .+..|++.|++|+.++. +....+...+.....+.. +.++.+|+.+.
T Consensus 27 ~~k~vlVTGas~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~D~~d~~~v~~~~ 97 (269)
T 4dmm_A 27 TDRIALVTGASRGIGRAIALELAAAGAKVAVNYASSAGAADEVVAAIAAAGGE---------AFAVKADVSQESEVEALF 97 (269)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCC---------EEEEECCTTSHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcCCc---------EEEEECCCCCHHHHHHHH
Confidence 46778888877654 34556667999999988 666666665555544322 27788898774
Q ss_pred ------CCCccEEEEccccc
Q 020710 217 ------DGKYDTVVCLDVLI 230 (322)
Q Consensus 217 ------~~~fD~V~~~~~l~ 230 (322)
-+..|+++.+..+.
T Consensus 98 ~~~~~~~g~id~lv~nAg~~ 117 (269)
T 4dmm_A 98 AAVIERWGRLDVLVNNAGIT 117 (269)
T ss_dssp HHHHHHHSCCCEEEECCCCC
T ss_pred HHHHHHcCCCCEEEECCCCC
Confidence 25899999887654
|
| >3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=87.65 E-value=2.6 Score=35.96 Aligned_cols=75 Identities=24% Similarity=0.250 Sum_probs=52.3
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeC-------------CHHHHHHHHHHhHHhhhccCCCCCCCCCceEEc
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDI-------------SAAMVAEARKKAEEELLADNGGEAPVMPKFEVK 211 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~-------------s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (322)
.++++|=.|++.|. .+..|++.|++|+.+|. +.+.++...+.....+.. +.++..
T Consensus 10 ~~k~~lVTGas~GIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~ 80 (277)
T 3tsc_A 10 EGRVAFITGAARGQGRAHAVRMAAEGADIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAANRR---------IVAAVV 80 (277)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHTTCC---------EEEEEC
T ss_pred CCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcCCe---------EEEEEC
Confidence 46789988887764 35556677999999998 566666555555443322 277888
Q ss_pred ccccC-------------CCCccEEEEcccccc
Q 020710 212 DLESL-------------DGKYDTVVCLDVLIH 231 (322)
Q Consensus 212 d~~~~-------------~~~fD~V~~~~~l~~ 231 (322)
|+.+. -+..|+++.+..+..
T Consensus 81 D~~~~~~v~~~~~~~~~~~g~id~lvnnAg~~~ 113 (277)
T 3tsc_A 81 DTRDFDRLRKVVDDGVAALGRLDIIVANAGVAA 113 (277)
T ss_dssp CTTCHHHHHHHHHHHHHHHSCCCEEEECCCCCC
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCC
Confidence 88764 268999998876543
|
| >2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=87.65 E-value=2.4 Score=36.31 Aligned_cols=73 Identities=21% Similarity=0.109 Sum_probs=48.9
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
.+++||=.|++.|. .+..|++.|++|+.+|.+++.++...+.+...+ + +.++.+|+.+.
T Consensus 28 ~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~---~-------~~~~~~Dv~d~~~v~~~~~ 97 (276)
T 2b4q_A 28 AGRIALVTGGSRGIGQMIAQGLLEAGARVFICARDAEACADTATRLSAYG---D-------CQAIPADLSSEAGARRLAQ 97 (276)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHTTSS---C-------EEECCCCTTSHHHHHHHHH
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC---c-------eEEEEeeCCCHHHHHHHHH
Confidence 46788888876553 344556669999999999876665544433222 1 16677787664
Q ss_pred -----CCCccEEEEccccc
Q 020710 217 -----DGKYDTVVCLDVLI 230 (322)
Q Consensus 217 -----~~~fD~V~~~~~l~ 230 (322)
.+..|+++.+..+.
T Consensus 98 ~~~~~~g~iD~lvnnAg~~ 116 (276)
T 2b4q_A 98 ALGELSARLDILVNNAGTS 116 (276)
T ss_dssp HHHHHCSCCSEEEECCCCC
T ss_pred HHHHhcCCCCEEEECCCCC
Confidence 25899999887653
|
| >1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A | Back alignment and structure |
|---|
Probab=87.57 E-value=4.6 Score=33.98 Aligned_cols=74 Identities=20% Similarity=0.127 Sum_probs=48.3
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
.+++||=.|++.|. ++..|++.|++|+.++.++..++...+.+...+.. +.++..|+.+.
T Consensus 13 ~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~---------~~~~~~D~~~~~~~~~~~~ 83 (266)
T 1xq1_A 13 KAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKGFQ---------VTGSVCDASLRPEREKLMQ 83 (266)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCC---------EEEEECCTTSHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCe---------eEEEECCCCCHHHHHHHHH
Confidence 35678877765543 23445556999999999987766655554433221 26778888664
Q ss_pred ------CCCccEEEEccccc
Q 020710 217 ------DGKYDTVVCLDVLI 230 (322)
Q Consensus 217 ------~~~fD~V~~~~~l~ 230 (322)
.+..|+|+.+....
T Consensus 84 ~~~~~~~~~id~li~~Ag~~ 103 (266)
T 1xq1_A 84 TVSSMFGGKLDILINNLGAI 103 (266)
T ss_dssp HHHHHHTTCCSEEEEECCC-
T ss_pred HHHHHhCCCCcEEEECCCCC
Confidence 17889999876543
|
| >4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=87.53 E-value=2.5 Score=36.28 Aligned_cols=73 Identities=23% Similarity=0.145 Sum_probs=50.8
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeC-CHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDI-SAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~-s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~------- 216 (322)
.++++|=.|++.|. .+..|++.|++|+.+|. +++.++...+.+...+.. +.++.+|+.+.
T Consensus 28 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~Dv~d~~~v~~~~ 98 (280)
T 4da9_A 28 ARPVAIVTGGRRGIGLGIARALAASGFDIAITGIGDAEGVAPVIAELSGLGAR---------VIFLRADLADLSSHQATV 98 (280)
T ss_dssp CCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHHTTCC---------EEEEECCTTSGGGHHHHH
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHHhcCCc---------EEEEEecCCCHHHHHHHH
Confidence 46788888887664 45556677999999996 666666655555443322 27888898775
Q ss_pred ------CCCccEEEEcccc
Q 020710 217 ------DGKYDTVVCLDVL 229 (322)
Q Consensus 217 ------~~~fD~V~~~~~l 229 (322)
-+..|+++.+..+
T Consensus 99 ~~~~~~~g~iD~lvnnAg~ 117 (280)
T 4da9_A 99 DAVVAEFGRIDCLVNNAGI 117 (280)
T ss_dssp HHHHHHHSCCCEEEEECC-
T ss_pred HHHHHHcCCCCEEEECCCc
Confidence 2589999988765
|
| >2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=87.47 E-value=3.1 Score=34.74 Aligned_cols=74 Identities=24% Similarity=0.182 Sum_probs=48.6
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeC-CHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDI-SAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~-s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~------- 216 (322)
.++++|=.|++.|. .+..|++.|++|+.++. +++.++...+.+...+.. +.++.+|+.+.
T Consensus 3 ~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~---------~~~~~~D~~~~~~~~~~~ 73 (246)
T 2uvd_A 3 KGKVALVTGASRGIGRAIAIDLAKQGANVVVNYAGNEQKANEVVDEIKKLGSD---------AIAVRADVANAEDVTNMV 73 (246)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCC---------EEEEECCTTCHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCc---------EEEEEcCCCCHHHHHHHH
Confidence 35678877766543 34445566999999998 777666555544433221 26788888764
Q ss_pred ------CCCccEEEEccccc
Q 020710 217 ------DGKYDTVVCLDVLI 230 (322)
Q Consensus 217 ------~~~fD~V~~~~~l~ 230 (322)
-+..|+++.+..+.
T Consensus 74 ~~~~~~~g~id~lv~nAg~~ 93 (246)
T 2uvd_A 74 KQTVDVFGQVDILVNNAGVT 93 (246)
T ss_dssp HHHHHHHSCCCEEEECCCCC
T ss_pred HHHHHHcCCCCEEEECCCCC
Confidence 15799999877653
|
| >3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A* | Back alignment and structure |
|---|
Probab=87.44 E-value=2.5 Score=35.76 Aligned_cols=72 Identities=18% Similarity=0.115 Sum_probs=49.9
Q ss_pred CCeEEEECCCccc---chHHHHhcCCEEEEE-eCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 149 GIAVCDAGCGTGS---LAIPLAKQGAIVSAS-DISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 149 ~~~VLDvGcG~G~---~~~~la~~~~~v~gv-D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
++++|=.|++.|. .+..|++.|++|+.+ +.++..++...+.+...+.. +.++.+|+.+.
T Consensus 4 ~k~vlVTGas~gIG~aia~~l~~~G~~vv~~~~r~~~~~~~~~~~~~~~~~~---------~~~~~~Dv~~~~~v~~~~~ 74 (258)
T 3oid_A 4 NKCALVTGSSRGVGKAAAIRLAENGYNIVINYARSKKAALETAEEIEKLGVK---------VLVVKANVGQPAKIKEMFQ 74 (258)
T ss_dssp CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTTTCC---------EEEEECCTTCHHHHHHHHH
T ss_pred CCEEEEecCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCc---------EEEEEcCCCCHHHHHHHHH
Confidence 5678888876554 345556679998886 88887777666665544322 27888898764
Q ss_pred -----CCCccEEEEcccc
Q 020710 217 -----DGKYDTVVCLDVL 229 (322)
Q Consensus 217 -----~~~fD~V~~~~~l 229 (322)
-+..|+++.+..+
T Consensus 75 ~~~~~~g~id~lv~nAg~ 92 (258)
T 3oid_A 75 QIDETFGRLDVFVNNAAS 92 (258)
T ss_dssp HHHHHHSCCCEEEECCCC
T ss_pred HHHHHcCCCCEEEECCCC
Confidence 2678999987754
|
| >3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A | Back alignment and structure |
|---|
Probab=87.35 E-value=3.4 Score=34.66 Aligned_cols=74 Identities=20% Similarity=0.197 Sum_probs=52.4
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEccc--ccC------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDL--ESL------ 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~--~~~------ 216 (322)
+++++|=.|++.|. .+..|++.|++|+.+|.+++.++...+.+...+.. + +.++..|+ .+.
T Consensus 11 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-~-------~~~~~~D~~~~~~~~~~~~ 82 (252)
T 3f1l_A 11 NDRIILVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQVASHINEETGR-Q-------PQWFILDLLTCTSENCQQL 82 (252)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSC-C-------CEEEECCTTTCCHHHHHHH
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCC-C-------ceEEEEecccCCHHHHHHH
Confidence 46788888887664 34556677999999999998877776665544321 1 27788888 432
Q ss_pred -------CCCccEEEEcccc
Q 020710 217 -------DGKYDTVVCLDVL 229 (322)
Q Consensus 217 -------~~~fD~V~~~~~l 229 (322)
.+..|+++.+..+
T Consensus 83 ~~~~~~~~g~id~lv~nAg~ 102 (252)
T 3f1l_A 83 AQRIAVNYPRLDGVLHNAGL 102 (252)
T ss_dssp HHHHHHHCSCCSEEEECCCC
T ss_pred HHHHHHhCCCCCEEEECCcc
Confidence 3689999988765
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=87.26 E-value=2 Score=38.51 Aligned_cols=45 Identities=27% Similarity=0.208 Sum_probs=35.8
Q ss_pred CCCCCCeEEEECCCc-ccchHHHHhc-CC-EEEEEeCCHHHHHHHHHH
Q 020710 145 GSLKGIAVCDAGCGT-GSLAIPLAKQ-GA-IVSASDISAAMVAEARKK 189 (322)
Q Consensus 145 ~~~~~~~VLDvGcG~-G~~~~~la~~-~~-~v~gvD~s~~~l~~a~~~ 189 (322)
+..++.+||-+|+|. |.++..+++. |+ +|+++|.+++.++.+++.
T Consensus 187 ~~~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~l 234 (373)
T 2fzw_A 187 KLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEF 234 (373)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc
Confidence 345788999999874 6777777776 88 799999999988887643
|
| >3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=87.10 E-value=2.5 Score=36.16 Aligned_cols=74 Identities=24% Similarity=0.254 Sum_probs=48.8
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
.++++|=.|++.|. .+..|++.|++|+.+|-++.. +...+.+...+.. +.++..|+.+.
T Consensus 30 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~-~~~~~~~~~~~~~---------~~~~~~Dv~d~~~v~~~~~ 99 (273)
T 3uf0_A 30 AGRTAVVTGAGSGIGRAIAHGYARAGAHVLAWGRTDGV-KEVADEIADGGGS---------AEAVVADLADLEGAANVAE 99 (273)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTHH-HHHHHHHHTTTCE---------EEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCHHHH-HHHHHHHHhcCCc---------EEEEEecCCCHHHHHHHHH
Confidence 57789999987664 455666779999999955443 3333333332222 27788888764
Q ss_pred ----CCCccEEEEcccccc
Q 020710 217 ----DGKYDTVVCLDVLIH 231 (322)
Q Consensus 217 ----~~~fD~V~~~~~l~~ 231 (322)
.+..|+++.+..+..
T Consensus 100 ~~~~~g~iD~lv~nAg~~~ 118 (273)
T 3uf0_A 100 ELAATRRVDVLVNNAGIIA 118 (273)
T ss_dssp HHHHHSCCCEEEECCCCCC
T ss_pred HHHhcCCCcEEEECCCCCC
Confidence 258999998876543
|
| >3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=87.00 E-value=2.9 Score=35.42 Aligned_cols=89 Identities=17% Similarity=0.185 Sum_probs=54.9
Q ss_pred CCeEEEECCCc-cc-chHHHHhcCCE-EEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccCCCCccEEEE
Q 020710 149 GIAVCDAGCGT-GS-LAIPLAKQGAI-VSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESLDGKYDTVVC 225 (322)
Q Consensus 149 ~~~VLDvGcG~-G~-~~~~la~~~~~-v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~fD~V~~ 225 (322)
+.+|.=||||. |. ++..+++.|.+ |+.+|.+++.++...+.. +. . ...|..+.-...|+|+.
T Consensus 10 ~m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~~~~~~~~~~~---g~-----------~-~~~~~~~~~~~~Dvvi~ 74 (266)
T 3d1l_A 10 DTPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTEESARELAQKV---EA-----------E-YTTDLAEVNPYAKLYIV 74 (266)
T ss_dssp GCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSHHHHHHHHHHT---TC-----------E-EESCGGGSCSCCSEEEE
T ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHc---CC-----------c-eeCCHHHHhcCCCEEEE
Confidence 46799999973 32 34445556888 899999988776554432 11 2 23345444446899985
Q ss_pred cccccccCcchHHHHHHHHHhcc-CCeEEEEEC
Q 020710 226 LDVLIHYPQSKADGMIAHLASLA-EKRLILSFA 257 (322)
Q Consensus 226 ~~~l~~~~~~~~~~~l~~l~~~~-~~~~il~~~ 257 (322)
..++.....+++.+...+ ++..++.+.
T Consensus 75 -----av~~~~~~~v~~~l~~~~~~~~ivv~~s 102 (266)
T 3d1l_A 75 -----SLKDSAFAELLQGIVEGKREEALMVHTA 102 (266)
T ss_dssp -----CCCHHHHHHHHHHHHTTCCTTCEEEECC
T ss_pred -----ecCHHHHHHHHHHHHhhcCCCcEEEECC
Confidence 445444567777777655 444555553
|
| >3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=86.98 E-value=2.1 Score=37.50 Aligned_cols=74 Identities=24% Similarity=0.244 Sum_probs=51.0
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCC------------HHHHHHHHHHhHHhhhccCCCCCCCCCceEEcc
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDIS------------AAMVAEARKKAEEELLADNGGEAPVMPKFEVKD 212 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s------------~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d 212 (322)
.++++|=.|++.|. .+..|++.|++|+.+|.+ .+.++...+.....+.. +.++..|
T Consensus 45 ~gk~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~D 115 (317)
T 3oec_A 45 QGKVAFITGAARGQGRTHAVRLAQDGADIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQGRR---------IIARQAD 115 (317)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHTTCC---------EEEEECC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCeEEEEecccccccccccccCHHHHHHHHHHHHhcCCe---------EEEEECC
Confidence 46788888887664 355566779999999986 55555555444443322 2788889
Q ss_pred cccC-------------CCCccEEEEccccc
Q 020710 213 LESL-------------DGKYDTVVCLDVLI 230 (322)
Q Consensus 213 ~~~~-------------~~~fD~V~~~~~l~ 230 (322)
+.+. -+..|+++.+..+.
T Consensus 116 v~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~ 146 (317)
T 3oec_A 116 VRDLASLQAVVDEALAEFGHIDILVSNVGIS 146 (317)
T ss_dssp TTCHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred CCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 8764 25899999887654
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=86.93 E-value=1.3 Score=39.84 Aligned_cols=44 Identities=30% Similarity=0.259 Sum_probs=35.6
Q ss_pred CCCCCCeEEEECCC-cccchHHHHhc-CC-EEEEEeCCHHHHHHHHH
Q 020710 145 GSLKGIAVCDAGCG-TGSLAIPLAKQ-GA-IVSASDISAAMVAEARK 188 (322)
Q Consensus 145 ~~~~~~~VLDvGcG-~G~~~~~la~~-~~-~v~gvD~s~~~l~~a~~ 188 (322)
...++.+||-+|+| .|.++..+++. |+ +|+++|.+++.++.+++
T Consensus 190 ~~~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~ 236 (378)
T 3uko_A 190 KVEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKK 236 (378)
T ss_dssp CCCTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHT
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence 34578899999997 47777788776 88 79999999988887754
|
| >1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A* | Back alignment and structure |
|---|
Probab=86.91 E-value=3.5 Score=35.46 Aligned_cols=74 Identities=15% Similarity=0.100 Sum_probs=50.2
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHh-hhccCCCCCCCCCceEEcccccC-------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEE-LLADNGGEAPVMPKFEVKDLESL------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~-~~~~~~~~~~~~~~~~~~d~~~~------- 216 (322)
.+++||=.|++.|. ++..|++.|++|+++|.++..++...+.+... +.. +.++.+|+.+.
T Consensus 25 ~~k~vlITGasggiG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~---------~~~~~~Dl~~~~~~~~~~ 95 (302)
T 1w6u_A 25 QGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTGNK---------VHAIQCDVRDPDMVQNTV 95 (302)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSSC---------EEEEECCTTCHHHHHHHH
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCc---------eEEEEeCCCCHHHHHHHH
Confidence 45778888876543 34455566999999999987766555544332 211 27888898764
Q ss_pred ------CCCccEEEEccccc
Q 020710 217 ------DGKYDTVVCLDVLI 230 (322)
Q Consensus 217 ------~~~fD~V~~~~~l~ 230 (322)
.+..|+|+.+..+.
T Consensus 96 ~~~~~~~g~id~li~~Ag~~ 115 (302)
T 1w6u_A 96 SELIKVAGHPNIVINNAAGN 115 (302)
T ss_dssp HHHHHHTCSCSEEEECCCCC
T ss_pred HHHHHHcCCCCEEEECCCCC
Confidence 35789999887653
|
| >3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=86.90 E-value=2.9 Score=34.78 Aligned_cols=70 Identities=21% Similarity=0.084 Sum_probs=49.9
Q ss_pred CCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC---------
Q 020710 149 GIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL--------- 216 (322)
Q Consensus 149 ~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--------- 216 (322)
++++|=.|++.|. ++..|++.|++|+.+|.+++.++...+.... . + .++..|+.+.
T Consensus 3 ~k~vlVTGas~GIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~---~--~-------~~~~~D~~~~~~v~~~~~~ 70 (235)
T 3l6e_A 3 LGHIIVTGAGSGLGRALTIGLVERGHQVSMMGRRYQRLQQQELLLGN---A--V-------IGIVADLAHHEDVDVAFAA 70 (235)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGG---G--E-------EEEECCTTSHHHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcC---C--c-------eEEECCCCCHHHHHHHHHH
Confidence 4678888887664 3455667799999999998877766554421 1 1 7888898764
Q ss_pred ----CCCccEEEEccccc
Q 020710 217 ----DGKYDTVVCLDVLI 230 (322)
Q Consensus 217 ----~~~fD~V~~~~~l~ 230 (322)
.+..|+++.+..+.
T Consensus 71 ~~~~~g~id~lvnnAg~~ 88 (235)
T 3l6e_A 71 AVEWGGLPELVLHCAGTG 88 (235)
T ss_dssp HHHHHCSCSEEEEECCCC
T ss_pred HHHhcCCCcEEEECCCCC
Confidence 26789999876653
|
| >3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=86.89 E-value=19 Score=33.32 Aligned_cols=161 Identities=16% Similarity=0.091 Sum_probs=82.1
Q ss_pred CCeEEEECCCc--ccchHHHHhcCCEEEEEeCCHHHH-HHHHHHhH---HhhhccCC--CCCCCCCceEEcccccCCCCc
Q 020710 149 GIAVCDAGCGT--GSLAIPLAKQGAIVSASDISAAMV-AEARKKAE---EELLADNG--GEAPVMPKFEVKDLESLDGKY 220 (322)
Q Consensus 149 ~~~VLDvGcG~--G~~~~~la~~~~~v~gvD~s~~~l-~~a~~~~~---~~~~~~~~--~~~~~~~~~~~~d~~~~~~~f 220 (322)
-.+|.=||+|+ +.++..+++.|.+|+..|++++.. +..++.+. +.+..... .....+ --...|+.. -...
T Consensus 54 i~kVaVIGaG~MG~~IA~~la~aG~~V~l~D~~~e~a~~~i~~~l~~~~~~G~l~~~~~~~~~~~-i~~t~dl~a-l~~a 131 (460)
T 3k6j_A 54 VNSVAIIGGGTMGKAMAICFGLAGIETFLVVRNEQRCKQELEVMYAREKSFKRLNDKRIEKINAN-LKITSDFHK-LSNC 131 (460)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHTT-EEEESCGGG-CTTC
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEECcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcc-eEEeCCHHH-HccC
Confidence 46799999996 445666777899999999998721 11111111 11110000 000000 012344443 3457
Q ss_pred cEEEEcccccccCcc-h-HHHHHHHHHhccCCeEEEEECCChhhHHHHHHh--------hc-cCCCCCCc-----ccccc
Q 020710 221 DTVVCLDVLIHYPQS-K-ADGMIAHLASLAEKRLILSFAPKTFYYDLLKRV--------GE-LFPGPSKA-----TRAYL 284 (322)
Q Consensus 221 D~V~~~~~l~~~~~~-~-~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~--------~~-~~~~~~~~-----~~~~~ 284 (322)
|+|+. -++.+ . ...+++++...++++.|+..+..+.....+... +- ++.+.... .....
T Consensus 132 DlVIe-----AVpe~~~vk~~v~~~l~~~~~~~aIlasnTSsl~i~~ia~~~~~p~r~iG~HffnPv~~m~LvEIv~g~~ 206 (460)
T 3k6j_A 132 DLIVE-----SVIEDMKLKKELFANLENICKSTCIFGTNTSSLDLNEISSVLRDPSNLVGIHFFNPANVIRLVEIIYGSH 206 (460)
T ss_dssp SEEEE-----CCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCHHHHHTTSSSGGGEEEEECCSSTTTCCEEEEECCSS
T ss_pred CEEEE-----cCCCCHHHHHHHHHHHHhhCCCCCEEEecCCChhHHHHHHhccCCcceEEEEecchhhhCCEEEEEeCCC
Confidence 99985 34432 2 357888888877777777554444332222211 11 11111100 00000
Q ss_pred C---CHHHHHHHHHHCCCEEEEEeeeecceehhhhh
Q 020710 285 H---AEADVERALQKVGWKIRKRGLITTQFYFARLV 317 (322)
Q Consensus 285 ~---~~~~~~~~l~~aGf~vv~~~~~~~~~~f~~~~ 317 (322)
- ..+.+..+++..|-.++.+.. ...|..++++
T Consensus 207 Ts~e~~~~~~~l~~~lGk~~v~v~d-~pGfi~Nril 241 (460)
T 3k6j_A 207 TSSQAIATAFQACESIKKLPVLVGN-CKSFVFNRLL 241 (460)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEESS-CCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCEEEEEec-ccHHHHHHHH
Confidence 0 234566788899999888764 4556555554
|
| >1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A* | Back alignment and structure |
|---|
Probab=86.88 E-value=3.5 Score=35.50 Aligned_cols=74 Identities=18% Similarity=0.072 Sum_probs=49.2
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEe-CCHHHHHHHHHHhH-HhhhccCCCCCCCCCceEEcccccCC-----
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASD-ISAAMVAEARKKAE-EELLADNGGEAPVMPKFEVKDLESLD----- 217 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD-~s~~~l~~a~~~~~-~~~~~~~~~~~~~~~~~~~~d~~~~~----- 217 (322)
.++++|=.|++.|. .+..|++.|++|+.+| .+++.++...+.+. ..+.. +.++..|+.+.+
T Consensus 8 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~r~~~~~~~~~~~l~~~~~~~---------~~~~~~Dl~~~~~~~~~ 78 (291)
T 1e7w_A 8 TVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRPNS---------AITVQADLSNVATAPVS 78 (291)
T ss_dssp CCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHSTTC---------EEEEECCCSSSCBCCCC
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHHhhhcCCe---------eEEEEeecCCccccccc
Confidence 35678877776553 3445556699999999 99877766655553 22211 267777876543
Q ss_pred -------------------------CCccEEEEccccc
Q 020710 218 -------------------------GKYDTVVCLDVLI 230 (322)
Q Consensus 218 -------------------------~~fD~V~~~~~l~ 230 (322)
+..|+++.+..+.
T Consensus 79 ~~~~~~~~~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~ 116 (291)
T 1e7w_A 79 GADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNASSF 116 (291)
T ss_dssp ----CCCBCHHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred ccccccccchHHHHHHHHHHHHHhcCCCCEEEECCCCC
Confidence 4799999887654
|
| >3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=86.77 E-value=2.8 Score=35.28 Aligned_cols=72 Identities=26% Similarity=0.183 Sum_probs=51.4
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
.++++|=.|++.|. ++..|+++|++|+.+|.+++.++...+.. +.. +.++..|+.+.
T Consensus 8 ~~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~---~~~---------~~~~~~D~~~~~~~~~~~~ 75 (261)
T 3n74_A 8 EGKVALITGAGSGFGEGMAKRFAKGGAKVVIVDRDKAGAERVAGEI---GDA---------ALAVAADISKEADVDAAVE 75 (261)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH---CTT---------EEEEECCTTSHHHHHHHHH
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHh---CCc---------eEEEEecCCCHHHHHHHHH
Confidence 46789999988664 45666777999999999988776655433 111 27788888764
Q ss_pred -----CCCccEEEEcccccc
Q 020710 217 -----DGKYDTVVCLDVLIH 231 (322)
Q Consensus 217 -----~~~fD~V~~~~~l~~ 231 (322)
-+..|+++.+..+.+
T Consensus 76 ~~~~~~g~id~li~~Ag~~~ 95 (261)
T 3n74_A 76 AALSKFGKVDILVNNAGIGH 95 (261)
T ss_dssp HHHHHHSCCCEEEECCCCCC
T ss_pred HHHHhcCCCCEEEECCccCC
Confidence 257899998876544
|
| >3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A* | Back alignment and structure |
|---|
Probab=86.77 E-value=1.7 Score=36.83 Aligned_cols=68 Identities=19% Similarity=0.148 Sum_probs=47.8
Q ss_pred CCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC---------
Q 020710 149 GIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL--------- 216 (322)
Q Consensus 149 ~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--------- 216 (322)
+++||=-|++.|. .+..|++.|++|+.+|.+++.++...+. +.. +.++.+|+.+.
T Consensus 2 nK~vlVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~----~~~---------~~~~~~Dv~~~~~v~~~v~~ 68 (247)
T 3ged_A 2 NRGVIVTGGGHGIGKQICLDFLEAGDKVCFIDIDEKRSADFAKE----RPN---------LFYFHGDVADPLTLKKFVEY 68 (247)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHTT----CTT---------EEEEECCTTSHHHHHHHHHH
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHh----cCC---------EEEEEecCCCHHHHHHHHHH
Confidence 3578888888775 3566777899999999998766544322 111 26788898764
Q ss_pred ----CCCccEEEEcccc
Q 020710 217 ----DGKYDTVVCLDVL 229 (322)
Q Consensus 217 ----~~~fD~V~~~~~l 229 (322)
-++.|+++.+..+
T Consensus 69 ~~~~~g~iDiLVNNAG~ 85 (247)
T 3ged_A 69 AMEKLQRIDVLVNNACR 85 (247)
T ss_dssp HHHHHSCCCEEEECCCC
T ss_pred HHHHcCCCCEEEECCCC
Confidence 3789999987644
|
| >3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=86.77 E-value=2.4 Score=35.91 Aligned_cols=75 Identities=20% Similarity=0.143 Sum_probs=52.4
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
.++++|=.|++.|. .+..|++.|++|+.+|.+++.++...+.+...+. .+ +.++..|+.+.
T Consensus 9 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~-~~-------~~~~~~Dv~~~~~v~~~~~ 80 (262)
T 3pk0_A 9 QGRSVVVTGGTKGIGRGIATVFARAGANVAVAGRSTADIDACVADLDQLGS-GK-------VIGVQTDVSDRAQCDALAG 80 (262)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTSS-SC-------EEEEECCTTSHHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhCC-Cc-------EEEEEcCCCCHHHHHHHHH
Confidence 46778888876554 3455666799999999999887776666554331 11 27888898764
Q ss_pred -----CCCccEEEEccccc
Q 020710 217 -----DGKYDTVVCLDVLI 230 (322)
Q Consensus 217 -----~~~fD~V~~~~~l~ 230 (322)
-+..|+++.+..+.
T Consensus 81 ~~~~~~g~id~lvnnAg~~ 99 (262)
T 3pk0_A 81 RAVEEFGGIDVVCANAGVF 99 (262)
T ss_dssp HHHHHHSCCSEEEECCCCC
T ss_pred HHHHHhCCCCEEEECCCCC
Confidence 25899999877653
|
| >4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A | Back alignment and structure |
|---|
Probab=86.59 E-value=2.1 Score=36.42 Aligned_cols=75 Identities=23% Similarity=0.174 Sum_probs=51.6
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeC-CHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDI-SAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~-s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~------- 216 (322)
.+++||=.|++.|. .+..|+++|++|+.++- ++...+...+.....+... .++..|+.+.
T Consensus 28 ~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~---------~~~~~D~~~~~~v~~~~ 98 (271)
T 4iin_A 28 TGKNVLITGASKGIGAEIAKTLASMGLKVWINYRSNAEVADALKNELEEKGYKA---------AVIKFDAASESDFIEAI 98 (271)
T ss_dssp SCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCE---------EEEECCTTCHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCce---------EEEECCCCCHHHHHHHH
Confidence 46788888887664 34556667999999998 5666565555555443222 7888888764
Q ss_pred ------CCCccEEEEcccccc
Q 020710 217 ------DGKYDTVVCLDVLIH 231 (322)
Q Consensus 217 ------~~~fD~V~~~~~l~~ 231 (322)
.+..|+++.+..+..
T Consensus 99 ~~~~~~~g~id~li~nAg~~~ 119 (271)
T 4iin_A 99 QTIVQSDGGLSYLVNNAGVVR 119 (271)
T ss_dssp HHHHHHHSSCCEEEECCCCCC
T ss_pred HHHHHhcCCCCEEEECCCcCC
Confidence 268999998876543
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=86.50 E-value=1.6 Score=38.45 Aligned_cols=43 Identities=30% Similarity=0.252 Sum_probs=34.9
Q ss_pred CCCCCeEEEEC--CCcccchHHHHhc-CCEEEEEeCCHHHHHHHHH
Q 020710 146 SLKGIAVCDAG--CGTGSLAIPLAKQ-GAIVSASDISAAMVAEARK 188 (322)
Q Consensus 146 ~~~~~~VLDvG--cG~G~~~~~la~~-~~~v~gvD~s~~~l~~a~~ 188 (322)
..++.+||-.| .|.|..+..+++. |++|+++|.+++.++.+++
T Consensus 138 ~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~ 183 (325)
T 3jyn_A 138 VKPGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKAAHAKA 183 (325)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHH
T ss_pred CCCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 45788999998 3467777777776 9999999999998887764
|
| >1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=86.44 E-value=3.6 Score=35.47 Aligned_cols=78 Identities=15% Similarity=0.060 Sum_probs=49.4
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
.+++||=.|++.|. ++..|++.|++|+.++.++..++...+.+....... .-..+.++.+|+.+.
T Consensus 17 ~~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~D~~~~~~v~~~~~ 92 (303)
T 1yxm_A 17 QGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPT----KQARVIPIQCNIRNEEEVNNLVK 92 (303)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCTT----CCCCEEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcccc----CCccEEEEecCCCCHHHHHHHHH
Confidence 46789988876543 334455669999999999877766555544310000 001127888898764
Q ss_pred -----CCCccEEEEcccc
Q 020710 217 -----DGKYDTVVCLDVL 229 (322)
Q Consensus 217 -----~~~fD~V~~~~~l 229 (322)
-+..|+|+.+...
T Consensus 93 ~~~~~~g~id~li~~Ag~ 110 (303)
T 1yxm_A 93 STLDTFGKINFLVNNGGG 110 (303)
T ss_dssp HHHHHHSCCCEEEECCCC
T ss_pred HHHHHcCCCCEEEECCCC
Confidence 1479999987764
|
| >2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=86.37 E-value=3.2 Score=35.08 Aligned_cols=76 Identities=20% Similarity=0.195 Sum_probs=49.0
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
.+++||=.|++.|. .+..|++.|++|+.+|.+++..+...+.+.......+ +.++.+|+.+.
T Consensus 6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~-------~~~~~~D~~~~~~v~~~~~ 78 (267)
T 2gdz_A 6 NGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQK-------TLFIQCDVADQQQLRDTFR 78 (267)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCGGG-------EEEEECCTTSHHHHHHHHH
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhcCCCc-------eEEEecCCCCHHHHHHHHH
Confidence 35678888876553 3455566799999999998766554443322100111 26788888764
Q ss_pred -----CCCccEEEEccccc
Q 020710 217 -----DGKYDTVVCLDVLI 230 (322)
Q Consensus 217 -----~~~fD~V~~~~~l~ 230 (322)
-+..|+++.+....
T Consensus 79 ~~~~~~g~id~lv~~Ag~~ 97 (267)
T 2gdz_A 79 KVVDHFGRLDILVNNAGVN 97 (267)
T ss_dssp HHHHHHSCCCEEEECCCCC
T ss_pred HHHHHcCCCCEEEECCCCC
Confidence 15789999887654
|
| >3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=86.31 E-value=11 Score=35.12 Aligned_cols=158 Identities=18% Similarity=0.152 Sum_probs=84.9
Q ss_pred CeEEEECCCc--ccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCC----------c-eEEcccccC
Q 020710 150 IAVCDAGCGT--GSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMP----------K-FEVKDLESL 216 (322)
Q Consensus 150 ~~VLDvGcG~--G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~----------~-~~~~d~~~~ 216 (322)
.+|.=||+|+ +.++..+++.|.+|+..|.+++.++.+.+....... ..+ ..-.+ . -...|++.
T Consensus 6 ~kVgVIGaG~MG~~IA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~-~~~--~~g~~~~~~~~~~~~~i~~~~~~~~- 81 (483)
T 3mog_A 6 QTVAVIGSGTMGAGIAEVAASHGHQVLLYDISAEALTRAIDGIHARLN-SRV--TRGKLTAETCERTLKRLIPVTDIHA- 81 (483)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHH-TTT--TTTSSCHHHHHHHHHTEEEECCGGG-
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHHHH-HHH--HcCCCCHHHHHHHHhceeEeCCHHH-
Confidence 4688889985 334566777799999999999999988765432110 000 00000 0 11233332
Q ss_pred CCCccEEEEcccccccCcc--hHHHHHHHHHhccCCeEEEEECCChhhHHHHHHh--------hc-cCCCCCC-----cc
Q 020710 217 DGKYDTVVCLDVLIHYPQS--KADGMIAHLASLAEKRLILSFAPKTFYYDLLKRV--------GE-LFPGPSK-----AT 280 (322)
Q Consensus 217 ~~~fD~V~~~~~l~~~~~~--~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~--------~~-~~~~~~~-----~~ 280 (322)
-...|+|+.. +++. ....+++++....+++.|+..+..+.....+... +- ++.+... ..
T Consensus 82 ~~~aDlVIeA-----Vpe~~~vk~~v~~~l~~~~~~~~IlasntSti~i~~ia~~~~~p~~~ig~hf~~Pa~v~~Lvevv 156 (483)
T 3mog_A 82 LAAADLVIEA-----ASERLEVKKALFAQLAEVCPPQTLLTTNTSSISITAIAAEIKNPERVAGLHFFNPAPVMKLVEVV 156 (483)
T ss_dssp GGGCSEEEEC-----CCCCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHHTTTSSSGGGEEEEEECSSTTTCCEEEEE
T ss_pred hcCCCEEEEc-----CCCcHHHHHHHHHHHHHhhccCcEEEecCCCCCHHHHHHHccCccceEEeeecChhhhCCeEEEe
Confidence 2457999853 4433 2357888888877777666554444332221111 00 1110000 00
Q ss_pred ccccCC---HHHHHHHHHHCCCEEEEEeeeecceehhhhh
Q 020710 281 RAYLHA---EADVERALQKVGWKIRKRGLITTQFYFARLV 317 (322)
Q Consensus 281 ~~~~~~---~~~~~~~l~~aGf~vv~~~~~~~~~~f~~~~ 317 (322)
.+..-+ .+.+..+++..|-.++.+... ..|..++++
T Consensus 157 ~g~~Ts~e~~~~~~~l~~~lGk~~v~v~d~-~Gfi~Nr~l 195 (483)
T 3mog_A 157 SGLATAAEVVEQLCELTLSWGKQPVRCHST-PGFIVNRVA 195 (483)
T ss_dssp ECSSCCHHHHHHHHHHHHHTTCEEEEEESC-TTTTHHHHT
T ss_pred cCCCCCHHHHHHHHHHHHHhCCEEEEEecc-CcchHHHHH
Confidence 000002 345668899999988887543 456666654
|
| >3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum} | Back alignment and structure |
|---|
Probab=86.28 E-value=2.6 Score=35.52 Aligned_cols=74 Identities=20% Similarity=0.185 Sum_probs=48.0
Q ss_pred CCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHH--HHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-------
Q 020710 149 GIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAM--VAEARKKAEEELLADNGGEAPVMPKFEVKDLESL------- 216 (322)
Q Consensus 149 ~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~--l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~------- 216 (322)
++++|=.|++.|. .+..|++.|++|+.+|.++.. ++...+.+...+.. +.++..|+.+.
T Consensus 2 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~---------~~~~~~Dv~~~~~v~~~~ 72 (258)
T 3a28_C 2 SKVAMVTGGAQGIGRGISEKLAADGFDIAVADLPQQEEQAAETIKLIEAADQK---------AVFVGLDVTDKANFDSAI 72 (258)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECGGGHHHHHHHHHHHHTTTCC---------EEEEECCTTCHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHHhcCCc---------EEEEEccCCCHHHHHHHH
Confidence 4568888876553 344455669999999988765 55444444332211 26788888764
Q ss_pred ------CCCccEEEEcccccc
Q 020710 217 ------DGKYDTVVCLDVLIH 231 (322)
Q Consensus 217 ------~~~fD~V~~~~~l~~ 231 (322)
-+..|+++.+..+.+
T Consensus 73 ~~~~~~~g~iD~lv~nAg~~~ 93 (258)
T 3a28_C 73 DEAAEKLGGFDVLVNNAGIAQ 93 (258)
T ss_dssp HHHHHHHTCCCEEEECCCCCC
T ss_pred HHHHHHhCCCCEEEECCCCCC
Confidence 157999998876543
|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
|---|
Probab=86.12 E-value=5.6 Score=32.86 Aligned_cols=59 Identities=10% Similarity=-0.009 Sum_probs=40.6
Q ss_pred CCeEEEECCCcccchHHHHhc----CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-------C
Q 020710 149 GIAVCDAGCGTGSLAIPLAKQ----GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------D 217 (322)
Q Consensus 149 ~~~VLDvGcG~G~~~~~la~~----~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------~ 217 (322)
..+|+=+||| ..+..+++. |. |+++|.+++.++.++ .+. .++.+|..+. -
T Consensus 9 ~~~viI~G~G--~~G~~la~~L~~~g~-v~vid~~~~~~~~~~-----~~~-----------~~i~gd~~~~~~l~~a~i 69 (234)
T 2aef_A 9 SRHVVICGWS--ESTLECLRELRGSEV-FVLAEDENVRKKVLR-----SGA-----------NFVHGDPTRVSDLEKANV 69 (234)
T ss_dssp -CEEEEESCC--HHHHHHHHHSTTSEE-EEEESCGGGHHHHHH-----TTC-----------EEEESCTTCHHHHHHTTC
T ss_pred CCEEEEECCC--hHHHHHHHHHHhCCe-EEEEECCHHHHHHHh-----cCC-----------eEEEcCCCCHHHHHhcCc
Confidence 5679999885 555555543 77 999999988766553 121 7888887653 3
Q ss_pred CCccEEEEc
Q 020710 218 GKYDTVVCL 226 (322)
Q Consensus 218 ~~fD~V~~~ 226 (322)
...|.|++.
T Consensus 70 ~~ad~vi~~ 78 (234)
T 2aef_A 70 RGARAVIVD 78 (234)
T ss_dssp TTCSEEEEC
T ss_pred chhcEEEEc
Confidence 578998864
|
| >3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=86.12 E-value=2.5 Score=37.02 Aligned_cols=44 Identities=34% Similarity=0.311 Sum_probs=31.7
Q ss_pred cCCCCCCeEEEEC-CC-cccchHHHHhc-CCEEEEEeCCHHHHHHHHH
Q 020710 144 EGSLKGIAVCDAG-CG-TGSLAIPLAKQ-GAIVSASDISAAMVAEARK 188 (322)
Q Consensus 144 ~~~~~~~~VLDvG-cG-~G~~~~~la~~-~~~v~gvD~s~~~l~~a~~ 188 (322)
....++.+||=+| +| .|..+..+++. |++|++++ ++.-.+.+++
T Consensus 148 ~~~~~g~~vlV~Ga~G~vG~~a~q~a~~~Ga~vi~~~-~~~~~~~~~~ 194 (321)
T 3tqh_A 148 AEVKQGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTA-SKRNHAFLKA 194 (321)
T ss_dssp TTCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEE-CHHHHHHHHH
T ss_pred cCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEe-ccchHHHHHH
Confidence 3456788999996 44 68888888876 99999987 5554555543
|
| >1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=86.08 E-value=3.1 Score=35.36 Aligned_cols=74 Identities=26% Similarity=0.200 Sum_probs=49.6
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHh-HHhhhccCCCCCCCCCceEEcccccC-------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKA-EEELLADNGGEAPVMPKFEVKDLESL------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~-~~~~~~~~~~~~~~~~~~~~~d~~~~------- 216 (322)
.++++|=.|++.|. .+..|++.|++|+.++.++..++...+.+ ...+.. +.++.+|+.+.
T Consensus 20 ~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~---------~~~~~~Dl~~~~~v~~~~ 90 (267)
T 1vl8_A 20 RGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYGVE---------TMAFRCDVSNYEEVKKLL 90 (267)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCC---------EEEEECCTTCHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCe---------EEEEEcCCCCHHHHHHHH
Confidence 46788888876553 34555667999999999987766555444 222211 16778888764
Q ss_pred ------CCCccEEEEccccc
Q 020710 217 ------DGKYDTVVCLDVLI 230 (322)
Q Consensus 217 ------~~~fD~V~~~~~l~ 230 (322)
-+..|+++.+..+.
T Consensus 91 ~~~~~~~g~iD~lvnnAg~~ 110 (267)
T 1vl8_A 91 EAVKEKFGKLDTVVNAAGIN 110 (267)
T ss_dssp HHHHHHHSCCCEEEECCCCC
T ss_pred HHHHHHcCCCCEEEECCCcC
Confidence 25799999876653
|
| >1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A* | Back alignment and structure |
|---|
Probab=86.01 E-value=2.3 Score=35.84 Aligned_cols=75 Identities=24% Similarity=0.287 Sum_probs=48.2
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHH-HHHHHHHhHHh-hhccCCCCCCCCCceEEcccccC------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAM-VAEARKKAEEE-LLADNGGEAPVMPKFEVKDLESL------ 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~-l~~a~~~~~~~-~~~~~~~~~~~~~~~~~~d~~~~------ 216 (322)
++++||=.|++.|. .+..|++.|++|+.+|.++.. ++...+.+... +.. +.++.+|+.+.
T Consensus 3 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~---------~~~~~~D~~~~~~v~~~ 73 (260)
T 1x1t_A 3 KGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHGVK---------VLYDGADLSKGEAVRGL 73 (260)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHHHTSC---------EEEECCCTTSHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHhccCCc---------EEEEECCCCCHHHHHHH
Confidence 35678877776553 334455669999999988765 55544444332 211 16777888764
Q ss_pred -------CCCccEEEEcccccc
Q 020710 217 -------DGKYDTVVCLDVLIH 231 (322)
Q Consensus 217 -------~~~fD~V~~~~~l~~ 231 (322)
-+..|+++.+..+..
T Consensus 74 ~~~~~~~~g~iD~lv~~Ag~~~ 95 (260)
T 1x1t_A 74 VDNAVRQMGRIDILVNNAGIQH 95 (260)
T ss_dssp HHHHHHHHSCCSEEEECCCCCC
T ss_pred HHHHHHhcCCCCEEEECCCCCC
Confidence 157999998876543
|
| >3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A* | Back alignment and structure |
|---|
Probab=85.97 E-value=3.9 Score=35.34 Aligned_cols=73 Identities=21% Similarity=0.104 Sum_probs=50.5
Q ss_pred CCCeEEEECCCc----cc-chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC------
Q 020710 148 KGIAVCDAGCGT----GS-LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL------ 216 (322)
Q Consensus 148 ~~~~VLDvGcG~----G~-~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~------ 216 (322)
.++++|=.|++. |. .+..|++.|++|+.+|.++...+...+.....+. +.++.+|+.+.
T Consensus 29 ~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~----------~~~~~~Dv~d~~~v~~~ 98 (296)
T 3k31_A 29 EGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSETFKKRVDPLAESLGV----------KLTVPCDVSDAESVDNM 98 (296)
T ss_dssp TTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHHTC----------CEEEECCTTCHHHHHHH
T ss_pred CCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCC----------eEEEEcCCCCHHHHHHH
Confidence 467899999753 32 4566667799999999997655555444443321 16888898774
Q ss_pred -------CCCccEEEEccccc
Q 020710 217 -------DGKYDTVVCLDVLI 230 (322)
Q Consensus 217 -------~~~fD~V~~~~~l~ 230 (322)
-+..|+++.+..+.
T Consensus 99 ~~~~~~~~g~iD~lVnnAG~~ 119 (296)
T 3k31_A 99 FKVLAEEWGSLDFVVHAVAFS 119 (296)
T ss_dssp HHHHHHHHSCCSEEEECCCCC
T ss_pred HHHHHHHcCCCCEEEECCCcC
Confidence 26899999887654
|
| >1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A* | Back alignment and structure |
|---|
Probab=85.77 E-value=2.4 Score=35.44 Aligned_cols=73 Identities=23% Similarity=0.116 Sum_probs=47.9
Q ss_pred CCCeEEEECCCcccchHH----HHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-------
Q 020710 148 KGIAVCDAGCGTGSLAIP----LAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~----la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~------- 216 (322)
.+++||=.|++ |..+.. |++.|++|+++|.++..++...+.+...+.. +.++.+|+.+.
T Consensus 10 ~~~~vlVtGas-ggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~---------~~~~~~D~~~~~~~~~~~ 79 (255)
T 1fmc_A 10 DGKCAIITGAG-AGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQ---------AFACRCDITSEQELSALA 79 (255)
T ss_dssp TTCEEEETTTT-SHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTTCC---------EEEEECCTTCHHHHHHHH
T ss_pred CCCEEEEECCc-cHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHHhCCc---------eEEEEcCCCCHHHHHHHH
Confidence 35678877765 444444 4455999999999987766555544433221 26778888764
Q ss_pred ------CCCccEEEEccccc
Q 020710 217 ------DGKYDTVVCLDVLI 230 (322)
Q Consensus 217 ------~~~fD~V~~~~~l~ 230 (322)
.+..|+|+.+....
T Consensus 80 ~~~~~~~~~~d~vi~~Ag~~ 99 (255)
T 1fmc_A 80 DFAISKLGKVDILVNNAGGG 99 (255)
T ss_dssp HHHHHHHSSCCEEEECCCCC
T ss_pred HHHHHhcCCCCEEEECCCCC
Confidence 14899999876653
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=85.76 E-value=2 Score=38.15 Aligned_cols=45 Identities=36% Similarity=0.342 Sum_probs=34.9
Q ss_pred hcCCCCCCeEEEECCCc-ccchHHHHhc-CC-EEEEEeCCHHHHHHHHH
Q 020710 143 DEGSLKGIAVCDAGCGT-GSLAIPLAKQ-GA-IVSASDISAAMVAEARK 188 (322)
Q Consensus 143 ~~~~~~~~~VLDvGcG~-G~~~~~la~~-~~-~v~gvD~s~~~l~~a~~ 188 (322)
..+. ++.+||-+|+|. |..+..+++. |+ +|+++|.+++.++.+++
T Consensus 163 ~~~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~ 210 (348)
T 2d8a_A 163 AGPI-SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKK 210 (348)
T ss_dssp TSCC-TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHH
T ss_pred hcCC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH
Confidence 3334 788999999963 6677777765 88 89999999988877764
|
| >3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=85.74 E-value=1.9 Score=37.48 Aligned_cols=75 Identities=20% Similarity=0.110 Sum_probs=51.9
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
.+++||=.|++.|. .+..|++.|++|+.+|.+++.++...+.+...+. .+ +.++.+|+.+.
T Consensus 40 ~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~-~~-------~~~~~~Dv~d~~~v~~~~~ 111 (293)
T 3rih_A 40 SARSVLVTGGTKGIGRGIATVFARAGANVAVAARSPRELSSVTAELGELGA-GN-------VIGVRLDVSDPGSCADAAR 111 (293)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHTTSSS-SC-------EEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhCC-Cc-------EEEEEEeCCCHHHHHHHHH
Confidence 46778888876654 3455666799999999998777666555543321 11 27788898764
Q ss_pred -----CCCccEEEEccccc
Q 020710 217 -----DGKYDTVVCLDVLI 230 (322)
Q Consensus 217 -----~~~fD~V~~~~~l~ 230 (322)
-+..|+++.+..+.
T Consensus 112 ~~~~~~g~iD~lvnnAg~~ 130 (293)
T 3rih_A 112 TVVDAFGALDVVCANAGIF 130 (293)
T ss_dssp HHHHHHSCCCEEEECCCCC
T ss_pred HHHHHcCCCCEEEECCCCC
Confidence 25789999877653
|
| >4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A | Back alignment and structure |
|---|
Probab=85.70 E-value=2.4 Score=35.89 Aligned_cols=75 Identities=19% Similarity=0.044 Sum_probs=54.0
Q ss_pred CCCCeEEEECCC----ccc-chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-----
Q 020710 147 LKGIAVCDAGCG----TGS-LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL----- 216 (322)
Q Consensus 147 ~~~~~VLDvGcG----~G~-~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~----- 216 (322)
.+++++|=-|++ .|. .+..|++.|++|+.+|.+++.++.+.+...+.+.. .+.++..|+.+.
T Consensus 4 l~gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~~~~~~~~~~~~--------~~~~~~~Dv~~~~~v~~ 75 (256)
T 4fs3_A 4 LENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKERSRKELEKLLEQLNQP--------EAHLYQIDVQSDEEVIN 75 (256)
T ss_dssp CTTCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHGGGTCS--------SCEEEECCTTCHHHHHH
T ss_pred CCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCC--------cEEEEEccCCCHHHHHH
Confidence 357889998853 343 45667788999999999988888777666544321 127888898764
Q ss_pred --------CCCccEEEEcccc
Q 020710 217 --------DGKYDTVVCLDVL 229 (322)
Q Consensus 217 --------~~~fD~V~~~~~l 229 (322)
-+..|.++.+-.+
T Consensus 76 ~~~~~~~~~G~iD~lvnnAg~ 96 (256)
T 4fs3_A 76 GFEQIGKDVGNIDGVYHSIAF 96 (256)
T ss_dssp HHHHHHHHHCCCSEEEECCCC
T ss_pred HHHHHHHHhCCCCEEEecccc
Confidence 3789999987654
|
| >2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=85.64 E-value=3.2 Score=35.01 Aligned_cols=71 Identities=21% Similarity=0.171 Sum_probs=48.1
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
.++++|=.|++.|. .+..|++.|++|+.+|.+++.++...+.+...+... .++.+|+.+.
T Consensus 4 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~---------~~~~~Dv~~~~~v~~~~~ 74 (260)
T 2qq5_A 4 NGQVCVVTGASRGIGRGIALQLCKAGATVYITGRHLDTLRVVAQEAQSLGGQC---------VPVVCDSSQESEVRSLFE 74 (260)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSSEE---------EEEECCTTSHHHHHHHHH
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCce---------EEEECCCCCHHHHHHHHH
Confidence 35678877766553 234455669999999999877766655554333221 6788888664
Q ss_pred ------CCCccEEEEcc
Q 020710 217 ------DGKYDTVVCLD 227 (322)
Q Consensus 217 ------~~~fD~V~~~~ 227 (322)
.+..|+++.+.
T Consensus 75 ~~~~~~~g~id~lvnnA 91 (260)
T 2qq5_A 75 QVDREQQGRLDVLVNNA 91 (260)
T ss_dssp HHHHHHTTCCCEEEECC
T ss_pred HHHHhcCCCceEEEECC
Confidence 25789999876
|
| >3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* | Back alignment and structure |
|---|
Probab=85.61 E-value=3.7 Score=35.38 Aligned_cols=73 Identities=23% Similarity=0.238 Sum_probs=48.8
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHH-HHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAA-MVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~------- 216 (322)
++++||=.|++.|. .+..|++.|++|+.+|.+.. ..+...+.....+.. +.++.+|+.+.
T Consensus 46 ~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~---------~~~~~~Dv~d~~~v~~~~ 116 (291)
T 3ijr_A 46 KGKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLDEEGDANETKQYVEKEGVK---------CVLLPGDLSDEQHCKDIV 116 (291)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTTTCC---------EEEEESCTTSHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCc---------EEEEECCCCCHHHHHHHH
Confidence 46789999987664 34556667999999998764 333344433333322 27888898764
Q ss_pred ------CCCccEEEEcccc
Q 020710 217 ------DGKYDTVVCLDVL 229 (322)
Q Consensus 217 ------~~~fD~V~~~~~l 229 (322)
-+..|+++.+...
T Consensus 117 ~~~~~~~g~iD~lvnnAg~ 135 (291)
T 3ijr_A 117 QETVRQLGSLNILVNNVAQ 135 (291)
T ss_dssp HHHHHHHSSCCEEEECCCC
T ss_pred HHHHHHcCCCCEEEECCCC
Confidence 2589999987554
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=85.58 E-value=1.5 Score=39.18 Aligned_cols=43 Identities=33% Similarity=0.472 Sum_probs=35.6
Q ss_pred CCCCCeEEEECCCc-ccchHHHHhc-CC-EEEEEeCCHHHHHHHHH
Q 020710 146 SLKGIAVCDAGCGT-GSLAIPLAKQ-GA-IVSASDISAAMVAEARK 188 (322)
Q Consensus 146 ~~~~~~VLDvGcG~-G~~~~~la~~-~~-~v~gvD~s~~~l~~a~~ 188 (322)
..++.+||-+|+|. |.++..+++. |+ +|+++|.+++.++.+++
T Consensus 169 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~ 214 (356)
T 1pl8_A 169 VTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKE 214 (356)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH
Confidence 45788999999985 7788888875 88 89999999988877764
|
| >4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=85.50 E-value=2.1 Score=36.83 Aligned_cols=75 Identities=19% Similarity=0.099 Sum_probs=51.1
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
.++++|=.|++.|. .+..|++.|++|+.+|.+++.++...+.+...+... +.++.+|+.+.
T Consensus 32 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~--------~~~~~~Dv~d~~~v~~~~~ 103 (281)
T 4dry_A 32 EGRIALVTGGGTGVGRGIAQALSAEGYSVVITGRRPDVLDAAAGEIGGRTGNI--------VRAVVCDVGDPDQVAALFA 103 (281)
T ss_dssp --CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSSC--------EEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCe--------EEEEEcCCCCHHHHHHHHH
Confidence 46788888876654 345556679999999999988777666654432210 16788888764
Q ss_pred -----CCCccEEEEccccc
Q 020710 217 -----DGKYDTVVCLDVLI 230 (322)
Q Consensus 217 -----~~~fD~V~~~~~l~ 230 (322)
-+..|+++.+..+.
T Consensus 104 ~~~~~~g~iD~lvnnAG~~ 122 (281)
T 4dry_A 104 AVRAEFARLDLLVNNAGSN 122 (281)
T ss_dssp HHHHHHSCCSEEEECCCCC
T ss_pred HHHHHcCCCCEEEECCCCC
Confidence 26889999887653
|
| >4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=85.46 E-value=3.4 Score=35.38 Aligned_cols=71 Identities=21% Similarity=0.129 Sum_probs=49.5
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
.++++|=.|++.|. .+..|++.|++|+.+|.+++.++...+.. +. + +.++..|+.+.
T Consensus 26 ~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~---~~--~-------~~~~~~Dv~d~~~v~~~~~ 93 (277)
T 4dqx_A 26 NQRVCIVTGGGSGIGRATAELFAKNGAYVVVADVNEDAAVRVANEI---GS--K-------AFGVRVDVSSAKDAESMVE 93 (277)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH---CT--T-------EEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---CC--c-------eEEEEecCCCHHHHHHHHH
Confidence 46788988887664 34556667999999999987665544432 11 1 16788888764
Q ss_pred -----CCCccEEEEccccc
Q 020710 217 -----DGKYDTVVCLDVLI 230 (322)
Q Consensus 217 -----~~~fD~V~~~~~l~ 230 (322)
-+..|+++.+..+.
T Consensus 94 ~~~~~~g~iD~lv~nAg~~ 112 (277)
T 4dqx_A 94 KTTAKWGRVDVLVNNAGFG 112 (277)
T ss_dssp HHHHHHSCCCEEEECCCCC
T ss_pred HHHHHcCCCCEEEECCCcC
Confidence 25899999887653
|
| >3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=85.38 E-value=5.2 Score=33.16 Aligned_cols=74 Identities=22% Similarity=0.231 Sum_probs=51.1
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEccc--ccC------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDL--ESL------ 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~--~~~------ 216 (322)
+++++|=.|++.|. ++..|++.|++|+.+|.++..++...+.+...+... +.++..|+ .+.
T Consensus 13 ~~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~--------~~~~~~d~d~~~~~~~~~~ 84 (247)
T 3i1j_A 13 KGRVILVTGAARGIGAAAARAYAAHGASVVLLGRTEASLAEVSDQIKSAGQPQ--------PLIIALNLENATAQQYREL 84 (247)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTSCC--------CEEEECCTTTCCHHHHHHH
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcCCCC--------ceEEEeccccCCHHHHHHH
Confidence 46788888877553 345566679999999999988887777666543211 25666666 332
Q ss_pred -------CCCccEEEEcccc
Q 020710 217 -------DGKYDTVVCLDVL 229 (322)
Q Consensus 217 -------~~~fD~V~~~~~l 229 (322)
-+..|+++.+..+
T Consensus 85 ~~~~~~~~g~id~lv~nAg~ 104 (247)
T 3i1j_A 85 AARVEHEFGRLDGLLHNASI 104 (247)
T ss_dssp HHHHHHHHSCCSEEEECCCC
T ss_pred HHHHHHhCCCCCEEEECCcc
Confidence 2589999988765
|
| >1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A* | Back alignment and structure |
|---|
Probab=85.36 E-value=3.9 Score=34.24 Aligned_cols=74 Identities=20% Similarity=0.103 Sum_probs=47.8
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeC-CHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDI-SAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~-s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~------- 216 (322)
.+++||=.|++.|. ++..|++.|++|+.++. ++..++...+.+...+.. +.++.+|+.+.
T Consensus 6 ~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~---------~~~~~~D~~~~~~~~~~~ 76 (261)
T 1gee_A 6 EGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVGGE---------AIAVKGDVTVESDVINLV 76 (261)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCE---------EEEEECCTTSHHHHHHHH
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHhcCCc---------eEEEECCCCCHHHHHHHH
Confidence 35678877766543 33445566999999998 776665554444433222 16788888764
Q ss_pred ------CCCccEEEEccccc
Q 020710 217 ------DGKYDTVVCLDVLI 230 (322)
Q Consensus 217 ------~~~fD~V~~~~~l~ 230 (322)
-+..|+|+.+..+.
T Consensus 77 ~~~~~~~g~id~li~~Ag~~ 96 (261)
T 1gee_A 77 QSAIKEFGKLDVMINNAGLE 96 (261)
T ss_dssp HHHHHHHSCCCEEEECCCCC
T ss_pred HHHHHHcCCCCEEEECCCCC
Confidence 14789999876654
|
| >4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=85.33 E-value=3.4 Score=35.05 Aligned_cols=74 Identities=16% Similarity=0.056 Sum_probs=49.1
Q ss_pred CCeEEEECCCccc---chHHHHhcCCEEEEE-eCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 149 GIAVCDAGCGTGS---LAIPLAKQGAIVSAS-DISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 149 ~~~VLDvGcG~G~---~~~~la~~~~~v~gv-D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
+++||=.|++.|. ++..|++.|++|+.+ +.+.+..+...+.....+... .++.+|+.+.
T Consensus 26 ~k~vlITGas~gIG~a~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~Dl~~~~~v~~~~~ 96 (272)
T 4e3z_A 26 TPVVLVTGGSRGIGAAVCRLAARQGWRVGVNYAANREAADAVVAAITESGGEA---------VAIPGDVGNAADIAAMFS 96 (272)
T ss_dssp SCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCEE---------EEEECCTTCHHHHHHHHH
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCChhHHHHHHHHHHhcCCcE---------EEEEcCCCCHHHHHHHHH
Confidence 5678877776554 234455669998776 677777766666555443322 7888898764
Q ss_pred -----CCCccEEEEcccccc
Q 020710 217 -----DGKYDTVVCLDVLIH 231 (322)
Q Consensus 217 -----~~~fD~V~~~~~l~~ 231 (322)
-+..|+++.+..+..
T Consensus 97 ~~~~~~g~id~li~nAg~~~ 116 (272)
T 4e3z_A 97 AVDRQFGRLDGLVNNAGIVD 116 (272)
T ss_dssp HHHHHHSCCCEEEECCCCCC
T ss_pred HHHHhCCCCCEEEECCCCCC
Confidence 257899998776543
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=85.28 E-value=10 Score=33.85 Aligned_cols=87 Identities=17% Similarity=0.269 Sum_probs=54.0
Q ss_pred CCeEEEECCCc-c-cchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC---CCCccEE
Q 020710 149 GIAVCDAGCGT-G-SLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL---DGKYDTV 223 (322)
Q Consensus 149 ~~~VLDvGcG~-G-~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~fD~V 223 (322)
..+|.=||+|. | .++..|++.|.+|++.|.+++.++.+.+. +. . ...+..+. ....|+|
T Consensus 22 ~mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~~~~~~~l~~~----g~-----------~-~~~s~~e~~~~a~~~DvV 85 (358)
T 4e21_A 22 SMQIGMIGLGRMGADMVRRLRKGGHECVVYDLNVNAVQALERE----GI-----------A-GARSIEEFCAKLVKPRVV 85 (358)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTT----TC-----------B-CCSSHHHHHHHSCSSCEE
T ss_pred CCEEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHC----CC-----------E-EeCCHHHHHhcCCCCCEE
Confidence 46899999883 2 23555667799999999999876655422 21 1 12233332 2346999
Q ss_pred EEcccccccCcchHHHHHHHHHhccCC-eEEEEE
Q 020710 224 VCLDVLIHYPQSKADGMIAHLASLAEK-RLILSF 256 (322)
Q Consensus 224 ~~~~~l~~~~~~~~~~~l~~l~~~~~~-~~il~~ 256 (322)
+.+ +|+.....+++.+...+++ .+++.+
T Consensus 86 i~~-----vp~~~v~~vl~~l~~~l~~g~iiId~ 114 (358)
T 4e21_A 86 WLM-----VPAAVVDSMLQRMTPLLAANDIVIDG 114 (358)
T ss_dssp EEC-----SCGGGHHHHHHHHGGGCCTTCEEEEC
T ss_pred EEe-----CCHHHHHHHHHHHHhhCCCCCEEEeC
Confidence 863 4444567788888776644 455544
|
| >3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=85.28 E-value=2.7 Score=36.21 Aligned_cols=75 Identities=20% Similarity=0.138 Sum_probs=52.8
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
.+++||=.|++.|. .+..|+++|++|+.++.++.-.+.+.+.+...+.. .+.++.+|+.+.
T Consensus 11 ~~k~vlITGas~GIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~--------~~~~~~~Dl~~~~~~v~~~~ 82 (311)
T 3o26_A 11 KRRCAVVTGGNKGIGFEICKQLSSNGIMVVLTCRDVTKGHEAVEKLKNSNHE--------NVVFHQLDVTDPIATMSSLA 82 (311)
T ss_dssp -CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCC--------SEEEEECCTTSCHHHHHHHH
T ss_pred CCcEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCC--------ceEEEEccCCCcHHHHHHHH
Confidence 36788888877654 34555667999999999988777766665543221 127888888664
Q ss_pred ------CCCccEEEEccccc
Q 020710 217 ------DGKYDTVVCLDVLI 230 (322)
Q Consensus 217 ------~~~fD~V~~~~~l~ 230 (322)
.+..|+++.+..+.
T Consensus 83 ~~~~~~~g~iD~lv~nAg~~ 102 (311)
T 3o26_A 83 DFIKTHFGKLDILVNNAGVA 102 (311)
T ss_dssp HHHHHHHSSCCEEEECCCCC
T ss_pred HHHHHhCCCCCEEEECCccc
Confidence 25899999988764
|
| >3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=85.27 E-value=2.8 Score=36.14 Aligned_cols=91 Identities=16% Similarity=0.172 Sum_probs=57.1
Q ss_pred CCeEEEECCCc-c-cchHHHHhcCC---EEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccCCCCccEE
Q 020710 149 GIAVCDAGCGT-G-SLAIPLAKQGA---IVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESLDGKYDTV 223 (322)
Q Consensus 149 ~~~VLDvGcG~-G-~~~~~la~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~fD~V 223 (322)
..+|.=||||. | .++..|.+.|. +|+..|.+++.++.+.+.+ +. .. ..|..+.-...|+|
T Consensus 3 ~~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~~~~~~l~~~~---gi-----------~~-~~~~~~~~~~aDvV 67 (280)
T 3tri_A 3 TSNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSLDKLDFFKEKC---GV-----------HT-TQDNRQGALNADVV 67 (280)
T ss_dssp CSCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSSHHHHHHHHTT---CC-----------EE-ESCHHHHHSSCSEE
T ss_pred CCEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCHHHHHHHHHHc---CC-----------EE-eCChHHHHhcCCeE
Confidence 35788999984 2 24455666677 8999999998776655432 21 22 22333322457999
Q ss_pred EEcccccccCcchHHHHHHHHHhc-cCCe-EEEEECCC
Q 020710 224 VCLDVLIHYPQSKADGMIAHLASL-AEKR-LILSFAPK 259 (322)
Q Consensus 224 ~~~~~l~~~~~~~~~~~l~~l~~~-~~~~-~il~~~~~ 259 (322)
+.. +++.....+++++... ++++ .++++...
T Consensus 68 ila-----v~p~~~~~vl~~l~~~~l~~~~iiiS~~ag 100 (280)
T 3tri_A 68 VLA-----VKPHQIKMVCEELKDILSETKILVISLAVG 100 (280)
T ss_dssp EEC-----SCGGGHHHHHHHHHHHHHTTTCEEEECCTT
T ss_pred EEE-----eCHHHHHHHHHHHHhhccCCCeEEEEecCC
Confidence 864 3445577888888876 6666 66665443
|
| >1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A* | Back alignment and structure |
|---|
Probab=85.18 E-value=2.8 Score=35.22 Aligned_cols=74 Identities=19% Similarity=0.179 Sum_probs=49.5
Q ss_pred CCCeEEEECCCccc---chHHHHh-cCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAK-QGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~------- 216 (322)
++++||=.|++.|. ++..|++ .|++|+.++.++...+...+.+...+.. +.++.+|+.+.
T Consensus 3 ~~k~vlITGasggIG~~~a~~L~~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~---------~~~~~~Dl~~~~~~~~~~ 73 (276)
T 1wma_A 3 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLS---------PRFHQLDIDDLQSIRALR 73 (276)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTCC---------CEEEECCTTCHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHhcCCeEEEEeCChHHHHHHHHHHHhcCCe---------eEEEECCCCCHHHHHHHH
Confidence 45678877755442 3344566 7999999999987766665555443221 27888998764
Q ss_pred ------CCCccEEEEccccc
Q 020710 217 ------DGKYDTVVCLDVLI 230 (322)
Q Consensus 217 ------~~~fD~V~~~~~l~ 230 (322)
.+..|+|+.+....
T Consensus 74 ~~~~~~~g~id~li~~Ag~~ 93 (276)
T 1wma_A 74 DFLRKEYGGLDVLVNNAGIA 93 (276)
T ss_dssp HHHHHHHSSEEEEEECCCCC
T ss_pred HHHHHhcCCCCEEEECCccc
Confidence 14799999876543
|
| >1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=85.15 E-value=6.4 Score=36.56 Aligned_cols=104 Identities=20% Similarity=0.157 Sum_probs=59.7
Q ss_pred CCeEEEECCCc-c-cchHHHHhcCCEEEEEeCCHHHHHHHHHHhHH-------hhhccCCCCCCCCCceEEcccccCCCC
Q 020710 149 GIAVCDAGCGT-G-SLAIPLAKQGAIVSASDISAAMVAEARKKAEE-------ELLADNGGEAPVMPKFEVKDLESLDGK 219 (322)
Q Consensus 149 ~~~VLDvGcG~-G-~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~-------~~~~~~~~~~~~~~~~~~~d~~~~~~~ 219 (322)
..+|.=||+|. | .++..++..|.+|+.+|.+++.++.+++.... .+............. ...|.+. -..
T Consensus 37 ~~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~-i~~~~~~-~~~ 114 (463)
T 1zcj_A 37 VSSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLR-FSSSTKE-LST 114 (463)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEE-EESCGGG-GTT
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhh-hcCCHHH-HCC
Confidence 45799999996 3 34556667799999999999988887664321 111000000000001 2344432 245
Q ss_pred ccEEEEcccccccCcch--HHHHHHHHHhccCCeEEEEECCC
Q 020710 220 YDTVVCLDVLIHYPQSK--ADGMIAHLASLAEKRLILSFAPK 259 (322)
Q Consensus 220 fD~V~~~~~l~~~~~~~--~~~~l~~l~~~~~~~~il~~~~~ 259 (322)
.|+|+.. ++... ...+++.+...++++.++..+..
T Consensus 115 aDlVIea-----Vpe~~~~k~~v~~~l~~~~~~~~ii~snTs 151 (463)
T 1zcj_A 115 VDLVVEA-----VFEDMNLKKKVFAELSALCKPGAFLCTNTS 151 (463)
T ss_dssp CSEEEEC-----CCSCHHHHHHHHHHHHHHSCTTCEEEECCS
T ss_pred CCEEEEc-----CCCCHHHHHHHHHHHHhhCCCCeEEEeCCC
Confidence 7999854 33321 35677888776666655554443
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=85.05 E-value=1.4 Score=39.14 Aligned_cols=45 Identities=31% Similarity=0.252 Sum_probs=35.9
Q ss_pred CCCCCCeEEEECC--CcccchHHHHhc-CCEEEEEeCCHHHHHHHHHH
Q 020710 145 GSLKGIAVCDAGC--GTGSLAIPLAKQ-GAIVSASDISAAMVAEARKK 189 (322)
Q Consensus 145 ~~~~~~~VLDvGc--G~G~~~~~la~~-~~~v~gvD~s~~~l~~a~~~ 189 (322)
...++.+||-.|+ |.|..+..+++. |++|+++|.+++.++.+++.
T Consensus 156 ~~~~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ 203 (342)
T 4eye_A 156 QLRAGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATEFVKSV 203 (342)
T ss_dssp CCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHH
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhc
Confidence 3457889999997 467777777766 99999999999888777653
|
| >2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=84.94 E-value=4.8 Score=35.41 Aligned_cols=73 Identities=18% Similarity=0.073 Sum_probs=48.4
Q ss_pred CCeEEEECCCccc---chHHHHhcCCEEEEEe-CCHHHHHHHHHHhH-HhhhccCCCCCCCCCceEEcccccCC------
Q 020710 149 GIAVCDAGCGTGS---LAIPLAKQGAIVSASD-ISAAMVAEARKKAE-EELLADNGGEAPVMPKFEVKDLESLD------ 217 (322)
Q Consensus 149 ~~~VLDvGcG~G~---~~~~la~~~~~v~gvD-~s~~~l~~a~~~~~-~~~~~~~~~~~~~~~~~~~~d~~~~~------ 217 (322)
++++|=.|++.|. .+..|++.|++|+.++ .+++.++.+.+.+. ..+.. +.++.+|+.+.+
T Consensus 46 ~k~~lVTGas~GIG~aia~~La~~G~~Vv~~~~r~~~~~~~~~~~l~~~~~~~---------~~~~~~Dl~d~~~~~~~~ 116 (328)
T 2qhx_A 46 VPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRPNS---------AITVQADLSNVATAPVSG 116 (328)
T ss_dssp CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHSTTC---------EEEEECCCSSSCBCC---
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhhcCCe---------EEEEEeeCCCchhccccc
Confidence 5678877776554 3444556699999999 99877766655543 22211 267778876543
Q ss_pred ------------------------CCccEEEEccccc
Q 020710 218 ------------------------GKYDTVVCLDVLI 230 (322)
Q Consensus 218 ------------------------~~fD~V~~~~~l~ 230 (322)
+..|+++.+..+.
T Consensus 117 ~~~~~~~~~~~~v~~~~~~~~~~~g~iD~lVnnAG~~ 153 (328)
T 2qhx_A 117 ADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNASSF 153 (328)
T ss_dssp ----CCBCHHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred cccccccccHHHHHHHHHHHHHhcCCCCEEEECCCCC
Confidence 4789999887653
|
| >3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A* | Back alignment and structure |
|---|
Probab=84.92 E-value=4.3 Score=33.83 Aligned_cols=73 Identities=15% Similarity=0.121 Sum_probs=48.1
Q ss_pred CCeEEEECCCccc---chHHHHhcCCEEEEEeC-CHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 149 GIAVCDAGCGTGS---LAIPLAKQGAIVSASDI-SAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 149 ~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~-s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
++++|=.|++.|. .+..|++.|++|+.+|. +++..+...+.+...+... .++.+|+.+.
T Consensus 4 ~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~Dv~d~~~v~~~~~ 74 (246)
T 3osu_A 4 TKSALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEIKAKGVDS---------FAIQANVADADEVKAMIK 74 (246)
T ss_dssp SCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTSCE---------EEEECCTTCHHHHHHHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcE---------EEEEccCCCHHHHHHHHH
Confidence 5677777776554 34455667999998887 5555555555554443222 6788888764
Q ss_pred -----CCCccEEEEccccc
Q 020710 217 -----DGKYDTVVCLDVLI 230 (322)
Q Consensus 217 -----~~~fD~V~~~~~l~ 230 (322)
-+..|+++.+..+.
T Consensus 75 ~~~~~~g~id~lv~nAg~~ 93 (246)
T 3osu_A 75 EVVSQFGSLDVLVNNAGIT 93 (246)
T ss_dssp HHHHHHSCCCEEEECCCCC
T ss_pred HHHHHcCCCCEEEECCCCC
Confidence 25899999887654
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=84.92 E-value=2.8 Score=36.12 Aligned_cols=71 Identities=15% Similarity=0.023 Sum_probs=51.8
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
+++.+|=-|++.|. .+..|++.|++|+.+|.+++.++.+.+.+ +.. +.++.+|+.+.
T Consensus 28 ~gKvalVTGas~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~~---g~~---------~~~~~~Dv~~~~~v~~~~~ 95 (273)
T 4fgs_A 28 NAKIAVITGATSGIGLAAAKRFVAEGARVFITGRRKDVLDAAIAEI---GGG---------AVGIQADSANLAELDRLYE 95 (273)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH---CTT---------CEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHc---CCC---------eEEEEecCCCHHHHHHHHH
Confidence 57888888988775 45666777999999999998877665443 211 26788888764
Q ss_pred -----CCCccEEEEccccc
Q 020710 217 -----DGKYDTVVCLDVLI 230 (322)
Q Consensus 217 -----~~~fD~V~~~~~l~ 230 (322)
-++.|+++.+....
T Consensus 96 ~~~~~~G~iDiLVNNAG~~ 114 (273)
T 4fgs_A 96 KVKAEAGRIDVLFVNAGGG 114 (273)
T ss_dssp HHHHHHSCEEEEEECCCCC
T ss_pred HHHHHcCCCCEEEECCCCC
Confidence 37899999876543
|
| >3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=84.92 E-value=0.99 Score=39.54 Aligned_cols=70 Identities=17% Similarity=0.166 Sum_probs=48.3
Q ss_pred hhhcCCCCCCeEEEECCC-cccchHHHHhc-CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccCCC
Q 020710 141 LNDEGSLKGIAVCDAGCG-TGSLAIPLAKQ-GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESLDG 218 (322)
Q Consensus 141 l~~~~~~~~~~VLDvGcG-~G~~~~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 218 (322)
+......++.+||-.|+| .|.++..+++. |++|+++| |++.++.+++. +.+ ..+ .|.+.+.+
T Consensus 135 l~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~-~~~~~~~~~~l----Ga~----------~v~-~d~~~v~~ 198 (315)
T 3goh_A 135 FEKIPLTKQREVLIVGFGAVNNLLTQMLNNAGYVVDLVS-ASLSQALAAKR----GVR----------HLY-REPSQVTQ 198 (315)
T ss_dssp HTTSCCCSCCEEEEECCSHHHHHHHHHHHHHTCEEEEEC-SSCCHHHHHHH----TEE----------EEE-SSGGGCCS
T ss_pred HhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEE-ChhhHHHHHHc----CCC----------EEE-cCHHHhCC
Confidence 333345678999999996 47778888876 99999999 98887777653 322 222 24333366
Q ss_pred CccEEEEc
Q 020710 219 KYDTVVCL 226 (322)
Q Consensus 219 ~fD~V~~~ 226 (322)
.+|+|+-+
T Consensus 199 g~Dvv~d~ 206 (315)
T 3goh_A 199 KYFAIFDA 206 (315)
T ss_dssp CEEEEECC
T ss_pred CccEEEEC
Confidence 89999853
|
| >3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=84.85 E-value=3.2 Score=35.56 Aligned_cols=72 Identities=25% Similarity=0.254 Sum_probs=50.7
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
.++++|=.|++.|. .+..|++.|++|+.+|.+++.++...+.. +. + +.++.+|+.+.
T Consensus 28 ~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~---~~--~-------~~~~~~Dv~d~~~v~~~~~ 95 (277)
T 3gvc_A 28 AGKVAIVTGAGAGIGLAVARRLADEGCHVLCADIDGDAADAAATKI---GC--G-------AAACRVDVSDEQQIIAMVD 95 (277)
T ss_dssp TTCEEEETTTTSTHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH---CS--S-------CEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc---CC--c-------ceEEEecCCCHHHHHHHHH
Confidence 46788888877654 34556677999999999987766554443 11 1 27888898765
Q ss_pred -----CCCccEEEEcccccc
Q 020710 217 -----DGKYDTVVCLDVLIH 231 (322)
Q Consensus 217 -----~~~fD~V~~~~~l~~ 231 (322)
-+..|+++.+..+.+
T Consensus 96 ~~~~~~g~iD~lvnnAg~~~ 115 (277)
T 3gvc_A 96 ACVAAFGGVDKLVANAGVVH 115 (277)
T ss_dssp HHHHHHSSCCEEEECCCCCC
T ss_pred HHHHHcCCCCEEEECCCCCC
Confidence 258999998876644
|
| >2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=84.84 E-value=6.9 Score=32.82 Aligned_cols=75 Identities=16% Similarity=0.131 Sum_probs=49.0
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-------C
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------D 217 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------~ 217 (322)
.+++||=.|++.|. .+..|++.|++|+.+|.+++.++...+.+.......+ +.++.+|+.+. +
T Consensus 6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~-------~~~~~~D~~~~~~v~~~~~ 78 (260)
T 2z1n_A 6 QGKLAVVTAGSSGLGFASALELARNGARLLLFSRNREKLEAAASRIASLVSGAQ-------VDIVAGDIREPGDIDRLFE 78 (260)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSTTCC-------EEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCe-------EEEEEccCCCHHHHHHHHH
Confidence 35678888877553 3445566699999999998776665554432100001 26788888764 1
Q ss_pred ------CCccEEEEccccc
Q 020710 218 ------GKYDTVVCLDVLI 230 (322)
Q Consensus 218 ------~~fD~V~~~~~l~ 230 (322)
+ .|+++.+..+.
T Consensus 79 ~~~~~~g-id~lv~~Ag~~ 96 (260)
T 2z1n_A 79 KARDLGG-ADILVYSTGGP 96 (260)
T ss_dssp HHHHTTC-CSEEEECCCCC
T ss_pred HHHHhcC-CCEEEECCCCC
Confidence 5 99999887653
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=84.76 E-value=2.6 Score=37.69 Aligned_cols=43 Identities=26% Similarity=0.211 Sum_probs=34.6
Q ss_pred CCCCCeEEEEC--CCcccchHHHHhc-CCEEEEEeCCHHHHHHHHH
Q 020710 146 SLKGIAVCDAG--CGTGSLAIPLAKQ-GAIVSASDISAAMVAEARK 188 (322)
Q Consensus 146 ~~~~~~VLDvG--cG~G~~~~~la~~-~~~v~gvD~s~~~l~~a~~ 188 (322)
..++.+||-.| .|.|..+..+++. |++|+++|.+++.++.+++
T Consensus 161 ~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~ 206 (362)
T 2c0c_A 161 LSEGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKS 206 (362)
T ss_dssp CCTTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHH
Confidence 35688999999 4577777777765 8999999999888777764
|
| >3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=84.73 E-value=2.1 Score=37.56 Aligned_cols=74 Identities=20% Similarity=0.223 Sum_probs=50.4
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCC----------HHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccc
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDIS----------AAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLE 214 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s----------~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 214 (322)
.++++|=.|++.|. .+..|++.|++|+.+|.+ ...++...+.+...+... .++.+|+.
T Consensus 26 ~gk~vlVTGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~Dv~ 96 (322)
T 3qlj_A 26 DGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSPASGGSAAQSVVDEITAAGGEA---------VADGSNVA 96 (322)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSSBTCTTSHHHHHHHHHHHTTCEE---------EEECCCTT
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCcccccccccccHHHHHHHHHHHHhcCCcE---------EEEECCCC
Confidence 46788888877654 345566779999999987 555555555554443222 67788887
Q ss_pred cC-------------CCCccEEEEccccc
Q 020710 215 SL-------------DGKYDTVVCLDVLI 230 (322)
Q Consensus 215 ~~-------------~~~fD~V~~~~~l~ 230 (322)
+. -+..|+++.+..+.
T Consensus 97 d~~~v~~~~~~~~~~~g~iD~lv~nAg~~ 125 (322)
T 3qlj_A 97 DWDQAAGLIQTAVETFGGLDVLVNNAGIV 125 (322)
T ss_dssp SHHHHHHHHHHHHHHHSCCCEEECCCCCC
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 64 25899999877654
|
| >3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=84.72 E-value=3.2 Score=35.37 Aligned_cols=74 Identities=22% Similarity=0.160 Sum_probs=49.8
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHH-------HHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAM-------VAEARKKAEEELLADNGGEAPVMPKFEVKDLESL- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~-------l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~- 216 (322)
.++++|=.|++.|. .+..|++.|++|+.+|.+... ++...+.....+... .++..|+.+.
T Consensus 5 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~Dv~~~~ 75 (274)
T 3e03_A 5 SGKTLFITGASRGIGLAIALRAARDGANVAIAAKSAVANPKLPGTIHSAAAAVNAAGGQG---------LALKCDIREED 75 (274)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCSCCTTSCCCHHHHHHHHHHHTSEE---------EEEECCTTCHH
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeccchhhhhhHHHHHHHHHHHHhcCCeE---------EEEeCCCCCHH
Confidence 46789999988764 355666779999999987642 333333333333222 7888898764
Q ss_pred ------------CCCccEEEEccccc
Q 020710 217 ------------DGKYDTVVCLDVLI 230 (322)
Q Consensus 217 ------------~~~fD~V~~~~~l~ 230 (322)
-+..|+++.+..+.
T Consensus 76 ~v~~~~~~~~~~~g~iD~lvnnAG~~ 101 (274)
T 3e03_A 76 QVRAAVAATVDTFGGIDILVNNASAI 101 (274)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCcc
Confidence 26899999887653
|
| >1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ... | Back alignment and structure |
|---|
Probab=84.62 E-value=2.9 Score=35.77 Aligned_cols=71 Identities=24% Similarity=0.265 Sum_probs=48.1
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
.+++||=.|++.|. ++..|++.|++|++++.++..++...+.+...+.. + +.++.+|+.+.
T Consensus 27 ~~k~vlITGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-~-------~~~~~~Dl~d~~~v~~~~~ 98 (286)
T 1xu9_A 27 QGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAA-S-------AHYIAGTMEDMTFAEQFVA 98 (286)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCS-E-------EEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhCCC-c-------eEEEeCCCCCHHHHHHHHH
Confidence 36788988876543 23445566999999999988777665554443221 1 26788888764
Q ss_pred -----CCCccEEEEc
Q 020710 217 -----DGKYDTVVCL 226 (322)
Q Consensus 217 -----~~~fD~V~~~ 226 (322)
.+..|+++.+
T Consensus 99 ~~~~~~g~iD~li~n 113 (286)
T 1xu9_A 99 QAGKLMGGLDMLILN 113 (286)
T ss_dssp HHHHHHTSCSEEEEC
T ss_pred HHHHHcCCCCEEEEC
Confidence 1589999977
|
| >2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=84.57 E-value=23 Score=34.93 Aligned_cols=160 Identities=18% Similarity=0.156 Sum_probs=82.4
Q ss_pred CeEEEECCCc--ccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCC--------CCCce-EEcccccCCC
Q 020710 150 IAVCDAGCGT--GSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAP--------VMPKF-EVKDLESLDG 218 (322)
Q Consensus 150 ~~VLDvGcG~--G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~--------~~~~~-~~~d~~~~~~ 218 (322)
.+|-=||+|+ +.++..+++.|.+|+..|++++.++.+++...+. +...+.... ....+ ...|++. -.
T Consensus 313 ~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~~~~~~~~~~i~~~-l~~~~~~G~~~~~~~~~~~~~i~~~~d~~~-~~ 390 (725)
T 2wtb_A 313 KKVAIIGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVKAN-LQSRVRKGSMSQEKFEKTMSLLKGSLDYES-FR 390 (725)
T ss_dssp CCEEEECCSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHH-HHHTTC----CTTHHHHTTTSEEEESSSGG-GT
T ss_pred cEEEEEcCCHhhHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHH-HHHHHhcCCCCHHHHHHHhcceEEeCCHHH-HC
Confidence 4688999985 3345566677999999999999888776543221 000000000 00011 2234422 24
Q ss_pred CccEEEEcccccccCcch--HHHHHHHHHhccCCeEEEEECCChhhHHHHHH--------hhcc-CCCCCCc-----ccc
Q 020710 219 KYDTVVCLDVLIHYPQSK--ADGMIAHLASLAEKRLILSFAPKTFYYDLLKR--------VGEL-FPGPSKA-----TRA 282 (322)
Q Consensus 219 ~fD~V~~~~~l~~~~~~~--~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~--------~~~~-~~~~~~~-----~~~ 282 (322)
..|+|+. -++.+. ...+++++...++++.|+..+..+.....+.. ++.. +.+.... ..+
T Consensus 391 ~aDlVIe-----aVpe~~~vk~~v~~~l~~~~~~~~IlasntStl~i~~la~~~~~p~~~iG~hf~~P~~~~~lvevv~g 465 (725)
T 2wtb_A 391 DVDMVIE-----AVIENISLKQQIFADLEKYCPQHCILASNTSTIDLNKIGERTKSQDRIVGAHFFSPAHIMPLLEIVRT 465 (725)
T ss_dssp TCSEEEE-----CCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHHTTTCSCTTTEEEEEECSSTTTCCEEEEEEC
T ss_pred CCCEEEE-----cCcCCHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHHHHHHHhcCCCCEEEecCCCCcccCceEEEEEC
Confidence 5799885 344332 35677888777777766655444432221111 1111 1110000 000
Q ss_pred ccCC---HHHHHHHHHHCCCEEEEEeeeecceehhhhh
Q 020710 283 YLHA---EADVERALQKVGWKIRKRGLITTQFYFARLV 317 (322)
Q Consensus 283 ~~~~---~~~~~~~l~~aGf~vv~~~~~~~~~~f~~~~ 317 (322)
.-.+ .+.+..+++..|..++.+... ..|..++++
T Consensus 466 ~~t~~e~~~~~~~l~~~lGk~~v~v~d~-~Gfi~Nril 502 (725)
T 2wtb_A 466 NHTSAQVIVDLLDVGKKIKKTPVVVGNC-TGFAVNRMF 502 (725)
T ss_dssp SSCCHHHHHHHHHHHHHTTCEEEEEESS-TTTTHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCEEEEECCC-ccHHHHHHH
Confidence 0012 344667888999988876543 556555544
|
| >2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=84.46 E-value=3.2 Score=35.46 Aligned_cols=87 Identities=17% Similarity=0.205 Sum_probs=52.1
Q ss_pred CeEEEECCCc-c-cchHHHHhcCC--EEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccCCC-CccEEE
Q 020710 150 IAVCDAGCGT-G-SLAIPLAKQGA--IVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESLDG-KYDTVV 224 (322)
Q Consensus 150 ~~VLDvGcG~-G-~~~~~la~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~fD~V~ 224 (322)
.+|.=||+|. | .++..|.+.|. +|+++|.+++.++.+++ .+.. .....|..+.-. ..|+|+
T Consensus 2 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~----~g~~----------~~~~~~~~~~~~~~aDvVi 67 (281)
T 2g5c_A 2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVD----LGII----------DEGTTSIAKVEDFSPDFVM 67 (281)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHH----TTSC----------SEEESCGGGGGGTCCSEEE
T ss_pred cEEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH----CCCc----------ccccCCHHHHhcCCCCEEE
Confidence 3688899884 2 33455556677 89999999887765542 2221 112234433334 689998
Q ss_pred EcccccccCcchHHHHHHHHHhccCCeEEEE
Q 020710 225 CLDVLIHYPQSKADGMIAHLASLAEKRLILS 255 (322)
Q Consensus 225 ~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~ 255 (322)
. .+|......+++.+...++++.+++
T Consensus 68 l-----avp~~~~~~v~~~l~~~l~~~~iv~ 93 (281)
T 2g5c_A 68 L-----SSPVRTFREIAKKLSYILSEDATVT 93 (281)
T ss_dssp E-----CSCHHHHHHHHHHHHHHSCTTCEEE
T ss_pred E-----cCCHHHHHHHHHHHHhhCCCCcEEE
Confidence 5 4555445677777766554444443
|
| >3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A* | Back alignment and structure |
|---|
Probab=84.45 E-value=2.9 Score=34.93 Aligned_cols=73 Identities=23% Similarity=0.158 Sum_probs=46.8
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCC-HHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDIS-AAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~------- 216 (322)
.+++||=.|++.|. ++..|+++|++|+++|.+ +..++...+.+...+.. +.++.+|+.+.
T Consensus 6 ~~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~---------~~~~~~D~~~~~~~~~~~ 76 (258)
T 3afn_B 6 KGKRVLITGSSQGIGLATARLFARAGAKVGLHGRKAPANIDETIASMRADGGD---------AAFFAADLATSEACQQLV 76 (258)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCCTTHHHHHHHHHHTTCE---------EEEEECCTTSHHHHHHHH
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEECCCchhhHHHHHHHHHhcCCc---------eEEEECCCCCHHHHHHHH
Confidence 35678877765443 234445569999999988 65555554444433222 27888898764
Q ss_pred ------CCCccEEEEcccc
Q 020710 217 ------DGKYDTVVCLDVL 229 (322)
Q Consensus 217 ------~~~fD~V~~~~~l 229 (322)
-+..|+|+.+...
T Consensus 77 ~~~~~~~g~id~vi~~Ag~ 95 (258)
T 3afn_B 77 DEFVAKFGGIDVLINNAGG 95 (258)
T ss_dssp HHHHHHHSSCSEEEECCCC
T ss_pred HHHHHHcCCCCEEEECCCC
Confidence 1479999987764
|
| >3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A | Back alignment and structure |
|---|
Probab=84.40 E-value=4.8 Score=34.15 Aligned_cols=75 Identities=19% Similarity=0.175 Sum_probs=50.3
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeC-CHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDI-SAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~-s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~------- 216 (322)
.++++|=.|++.|. .+..|++.|++|+.++. +....+...+.+...+.. +.++.+|+.+.
T Consensus 17 ~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~Dv~~~~~v~~~~ 87 (270)
T 3is3_A 17 DGKVALVTGSGRGIGAAVAVHLGRLGAKVVVNYANSTKDAEKVVSEIKALGSD---------AIAIKADIRQVPEIVKLF 87 (270)
T ss_dssp TTCEEEESCTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCC---------EEEEECCTTSHHHHHHHH
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCc---------EEEEEcCCCCHHHHHHHH
Confidence 46788888877664 34556677999998876 455555555555443322 27888898774
Q ss_pred ------CCCccEEEEcccccc
Q 020710 217 ------DGKYDTVVCLDVLIH 231 (322)
Q Consensus 217 ------~~~fD~V~~~~~l~~ 231 (322)
-+..|+++.+..+.+
T Consensus 88 ~~~~~~~g~id~lvnnAg~~~ 108 (270)
T 3is3_A 88 DQAVAHFGHLDIAVSNSGVVS 108 (270)
T ss_dssp HHHHHHHSCCCEEECCCCCCC
T ss_pred HHHHHHcCCCCEEEECCCCCC
Confidence 258999998766543
|
| >1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=84.36 E-value=3.2 Score=35.33 Aligned_cols=76 Identities=22% Similarity=0.195 Sum_probs=47.8
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhh-ccCCCCCCCCCceEEcccccC-------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELL-ADNGGEAPVMPKFEVKDLESL------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~------- 216 (322)
.+++||=.|++.|. .+..|++.|++|+.++.+++.++...+.+..... ..+ +.++.+|+.+.
T Consensus 5 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~-------~~~~~~D~~~~~~~~~~~ 77 (278)
T 1spx_A 5 AEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQN-------VNSVVADVTTDAGQDEIL 77 (278)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGG-------EEEEECCTTSHHHHHHHH
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcccCCCc-------eeEEecccCCHHHHHHHH
Confidence 35678877776553 3445556699999999998777665544421110 111 26788888764
Q ss_pred ------CCCccEEEEccccc
Q 020710 217 ------DGKYDTVVCLDVLI 230 (322)
Q Consensus 217 ------~~~fD~V~~~~~l~ 230 (322)
-+..|+++.+..+.
T Consensus 78 ~~~~~~~g~id~lv~~Ag~~ 97 (278)
T 1spx_A 78 STTLGKFGKLDILVNNAGAA 97 (278)
T ss_dssp HHHHHHHSCCCEEEECCC--
T ss_pred HHHHHHcCCCCEEEECCCCC
Confidence 14799999877653
|
| >1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=84.34 E-value=6.7 Score=34.06 Aligned_cols=95 Identities=23% Similarity=0.240 Sum_probs=58.9
Q ss_pred CCCeEEEECCCc-c-cchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccCCCCccEEEE
Q 020710 148 KGIAVCDAGCGT-G-SLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESLDGKYDTVVC 225 (322)
Q Consensus 148 ~~~~VLDvGcG~-G-~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~fD~V~~ 225 (322)
..++|-=||+|+ | .++..++ .|.+|+..|.+++.++.+.+.+.+..... + . ...|+.. -...|+|+.
T Consensus 11 ~~~~V~vIG~G~MG~~iA~~la-aG~~V~v~d~~~~~~~~~~~~l~~~~~~~-i-------~-~~~~~~~-~~~aDlVie 79 (293)
T 1zej_A 11 HHMKVFVIGAGLMGRGIAIAIA-SKHEVVLQDVSEKALEAAREQIPEELLSK-I-------E-FTTTLEK-VKDCDIVME 79 (293)
T ss_dssp -CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHHHHHHHHHHSCGGGGGG-E-------E-EESSCTT-GGGCSEEEE
T ss_pred CCCeEEEEeeCHHHHHHHHHHH-cCCEEEEEECCHHHHHHHHHHHHHHHhCC-e-------E-EeCCHHH-HcCCCEEEE
Confidence 367899999995 3 4677788 89999999999999988877621111100 0 1 2334443 345799984
Q ss_pred cccccccCcch--HHHHHHHHHhccCCeEEEEECCCh
Q 020710 226 LDVLIHYPQSK--ADGMIAHLASLAEKRLILSFAPKT 260 (322)
Q Consensus 226 ~~~l~~~~~~~--~~~~l~~l~~~~~~~~il~~~~~~ 260 (322)
-+|++. ...+++++..+ ++.++..+..+
T Consensus 80 -----avpe~~~vk~~l~~~l~~~--~~~IlasntSt 109 (293)
T 1zej_A 80 -----AVFEDLNTKVEVLREVERL--TNAPLCSNTSV 109 (293)
T ss_dssp -----CCCSCHHHHHHHHHHHHTT--CCSCEEECCSS
T ss_pred -----cCcCCHHHHHHHHHHHhcC--CCCEEEEECCC
Confidence 455433 34667777766 55555443333
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=84.32 E-value=9.1 Score=27.21 Aligned_cols=62 Identities=19% Similarity=0.216 Sum_probs=40.8
Q ss_pred CCeEEEECCCcccchHH----HHhcC-CEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC------C
Q 020710 149 GIAVCDAGCGTGSLAIP----LAKQG-AIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL------D 217 (322)
Q Consensus 149 ~~~VLDvGcG~G~~~~~----la~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~------~ 217 (322)
..+|+=+|+ |..+.. |.+.| .+|+++|.++..++... ..+ +.+...|+.+. -
T Consensus 5 ~~~v~I~G~--G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~----~~~-----------~~~~~~d~~~~~~~~~~~ 67 (118)
T 3ic5_A 5 RWNICVVGA--GKIGQMIAALLKTSSNYSVTVADHDLAALAVLN----RMG-----------VATKQVDAKDEAGLAKAL 67 (118)
T ss_dssp CEEEEEECC--SHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHH----TTT-----------CEEEECCTTCHHHHHHHT
T ss_pred cCeEEEECC--CHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHH----hCC-----------CcEEEecCCCHHHHHHHH
Confidence 568999999 444443 44558 78999999987665543 111 15666776543 3
Q ss_pred CCccEEEEcc
Q 020710 218 GKYDTVVCLD 227 (322)
Q Consensus 218 ~~fD~V~~~~ 227 (322)
..+|+|+.+-
T Consensus 68 ~~~d~vi~~~ 77 (118)
T 3ic5_A 68 GGFDAVISAA 77 (118)
T ss_dssp TTCSEEEECS
T ss_pred cCCCEEEECC
Confidence 5789998765
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=84.27 E-value=1.7 Score=38.38 Aligned_cols=43 Identities=26% Similarity=0.166 Sum_probs=34.0
Q ss_pred CCCCCeEEEECC--CcccchHHHHhc-CCEEEEEeCCHHHHHHHHH
Q 020710 146 SLKGIAVCDAGC--GTGSLAIPLAKQ-GAIVSASDISAAMVAEARK 188 (322)
Q Consensus 146 ~~~~~~VLDvGc--G~G~~~~~la~~-~~~v~gvD~s~~~l~~a~~ 188 (322)
..++.+||-.|+ |.|..+..+++. |++|+++|.+++.++.+++
T Consensus 146 ~~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~ 191 (334)
T 3qwb_A 146 VKKGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKLKIAKE 191 (334)
T ss_dssp CCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 457889999994 466677777765 9999999999988877654
|
| >2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=84.20 E-value=4.1 Score=34.86 Aligned_cols=74 Identities=15% Similarity=0.041 Sum_probs=48.4
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
.+++||=.|++.|. ++..|++.|++|+.++-++..++...+.+...+.. +.++.+|+.+.
T Consensus 43 ~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~---------~~~~~~Dl~d~~~v~~~~~ 113 (285)
T 2c07_A 43 ENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFGYE---------SSGYAGDVSKKEEISEVIN 113 (285)
T ss_dssp SSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTTCC---------EEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcCCc---------eeEEECCCCCHHHHHHHHH
Confidence 35678888876543 23344455999999998877666555544433221 26788888764
Q ss_pred -----CCCccEEEEccccc
Q 020710 217 -----DGKYDTVVCLDVLI 230 (322)
Q Consensus 217 -----~~~fD~V~~~~~l~ 230 (322)
.+..|+|+.+..+.
T Consensus 114 ~~~~~~~~id~li~~Ag~~ 132 (285)
T 2c07_A 114 KILTEHKNVDILVNNAGIT 132 (285)
T ss_dssp HHHHHCSCCCEEEECCCCC
T ss_pred HHHHhcCCCCEEEECCCCC
Confidence 25799999887654
|
| >1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=84.12 E-value=6.3 Score=32.49 Aligned_cols=70 Identities=23% Similarity=0.204 Sum_probs=45.2
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
++++||=.|++.|. ++..|++.|++|+++|.++..++...+... + ++++.+|+.+.
T Consensus 6 ~~~~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~-----------~~~~~~D~~~~~~~~~~~~ 72 (244)
T 1cyd_A 6 SGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKECP--G-----------IEPVCVDLGDWDATEKALG 72 (244)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHST--T-----------CEEEECCTTCHHHHHHHHT
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcc--C-----------CCcEEecCCCHHHHHHHHH
Confidence 46788888875443 234455669999999998866544332210 1 16678887664
Q ss_pred -CCCccEEEEccccc
Q 020710 217 -DGKYDTVVCLDVLI 230 (322)
Q Consensus 217 -~~~fD~V~~~~~l~ 230 (322)
.+..|+|+.+..+.
T Consensus 73 ~~~~id~vi~~Ag~~ 87 (244)
T 1cyd_A 73 GIGPVDLLVNNAALV 87 (244)
T ss_dssp TCCCCSEEEECCCCC
T ss_pred HcCCCCEEEECCccc
Confidence 24689999887643
|
| >2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A* | Back alignment and structure |
|---|
Probab=83.95 E-value=4.4 Score=33.56 Aligned_cols=74 Identities=18% Similarity=0.081 Sum_probs=48.1
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHH-hhhccCCCCCCCCCceEEcccccC-------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEE-ELLADNGGEAPVMPKFEVKDLESL------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~-~~~~~~~~~~~~~~~~~~~d~~~~------- 216 (322)
++++||=.|++.|. ++..|++.|++|+.++.++..++...+.+.. .+.. +.++.+|+.+.
T Consensus 6 ~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~---------~~~~~~D~~~~~~~~~~~ 76 (248)
T 2pnf_A 6 QGKVSLVTGSTRGIGRAIAEKLASAGSTVIITGTSGERAKAVAEEIANKYGVK---------AHGVEMNLLSEESINKAF 76 (248)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHCCC---------EEEEECCTTCHHHHHHHH
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhhcCCc---------eEEEEccCCCHHHHHHHH
Confidence 35678877775443 2344555699999999998776655544433 1211 26778887664
Q ss_pred ------CCCccEEEEccccc
Q 020710 217 ------DGKYDTVVCLDVLI 230 (322)
Q Consensus 217 ------~~~fD~V~~~~~l~ 230 (322)
.+..|+|+.+....
T Consensus 77 ~~~~~~~~~~d~vi~~Ag~~ 96 (248)
T 2pnf_A 77 EEIYNLVDGIDILVNNAGIT 96 (248)
T ss_dssp HHHHHHSSCCSEEEECCCCC
T ss_pred HHHHHhcCCCCEEEECCCCC
Confidence 25799999877654
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=83.95 E-value=1.6 Score=39.27 Aligned_cols=44 Identities=34% Similarity=0.326 Sum_probs=36.2
Q ss_pred CCCCCCeEEEECCCc-ccchHHHHhc-CCEEEEEeCCHHHHHHHHH
Q 020710 145 GSLKGIAVCDAGCGT-GSLAIPLAKQ-GAIVSASDISAAMVAEARK 188 (322)
Q Consensus 145 ~~~~~~~VLDvGcG~-G~~~~~la~~-~~~v~gvD~s~~~l~~a~~ 188 (322)
+..++.+||-+|+|. |.++..+++. |++|+++|.+++.++.+++
T Consensus 191 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a~~ 236 (369)
T 1uuf_A 191 QAGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKA 236 (369)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 345788999999984 7777777775 8999999999988887765
|
| >1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G | Back alignment and structure |
|---|
Probab=83.82 E-value=5.8 Score=32.72 Aligned_cols=72 Identities=22% Similarity=0.094 Sum_probs=45.0
Q ss_pred CeEEEECCCcccchH----HHHhcCCEEEEE-eCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 150 IAVCDAGCGTGSLAI----PLAKQGAIVSAS-DISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 150 ~~VLDvGcG~G~~~~----~la~~~~~v~gv-D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
++||=.|++ |..+. .|++.|++|+.+ +.++...+...+.+...+... .++.+|+.+.
T Consensus 2 k~vlVTGas-ggiG~~la~~l~~~G~~v~~~~~r~~~~~~~~~~~~~~~~~~~---------~~~~~D~~~~~~~~~~~~ 71 (244)
T 1edo_A 2 PVVVVTGAS-RGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAYGGQA---------ITFGGDVSKEADVEAMMK 71 (244)
T ss_dssp CEEEETTCS-SHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHTCEE---------EEEECCTTSHHHHHHHHH
T ss_pred CEEEEeCCC-chHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCcE---------EEEeCCCCCHHHHHHHHH
Confidence 456666654 44444 445569999884 788776665555444333221 6778888764
Q ss_pred -----CCCccEEEEcccccc
Q 020710 217 -----DGKYDTVVCLDVLIH 231 (322)
Q Consensus 217 -----~~~fD~V~~~~~l~~ 231 (322)
-+..|+|+.+.....
T Consensus 72 ~~~~~~g~id~li~~Ag~~~ 91 (244)
T 1edo_A 72 TAIDAWGTIDVVVNNAGITR 91 (244)
T ss_dssp HHHHHSSCCSEEEECCCCCC
T ss_pred HHHHHcCCCCEEEECCCCCC
Confidence 247999998876543
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=83.74 E-value=8.2 Score=33.16 Aligned_cols=99 Identities=22% Similarity=0.329 Sum_probs=53.9
Q ss_pred CeEEEECCCc-c-cchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccCC---CCccEEE
Q 020710 150 IAVCDAGCGT-G-SLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESLD---GKYDTVV 224 (322)
Q Consensus 150 ~~VLDvGcG~-G-~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~fD~V~ 224 (322)
.+|+=||+|. | .++..|++.|.+|+.+|.+++.++..++. +.............+...+..+.. ..+|+|+
T Consensus 4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi 79 (316)
T 2ew2_A 4 MKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWPAHIEAIRKN----GLIADFNGEEVVANLPIFSPEEIDHQNEQVDLII 79 (316)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHH----CEEEEETTEEEEECCCEECGGGCCTTSCCCSEEE
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhC----CEEEEeCCCeeEecceeecchhhcccCCCCCEEE
Confidence 5799999984 2 23455666799999999999877665543 211000000000000111212222 2689998
Q ss_pred EcccccccCcchHHHHHHHHHhccCC-eEEEEEC
Q 020710 225 CLDVLIHYPQSKADGMIAHLASLAEK-RLILSFA 257 (322)
Q Consensus 225 ~~~~l~~~~~~~~~~~l~~l~~~~~~-~~il~~~ 257 (322)
.+ ++......+++.+...+++ ..++.+.
T Consensus 80 ~~-----v~~~~~~~v~~~l~~~l~~~~~iv~~~ 108 (316)
T 2ew2_A 80 AL-----TKAQQLDAMFKAIQPMITEKTYVLCLL 108 (316)
T ss_dssp EC-----SCHHHHHHHHHHHGGGCCTTCEEEECC
T ss_pred EE-----eccccHHHHHHHHHHhcCCCCEEEEec
Confidence 64 3333466788888776554 4555553
|
| >3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=83.74 E-value=5.2 Score=34.21 Aligned_cols=76 Identities=16% Similarity=0.095 Sum_probs=50.7
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeC-CHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDI-SAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~-s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~------- 216 (322)
.++++|=.|++.|. .+..|++.|++|+.+|. ++..++...+....... .+ +.++.+|+.+.
T Consensus 24 ~~k~~lVTGas~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~-------~~~~~~Dv~d~~~v~~~~ 95 (281)
T 3v2h_A 24 MTKTAVITGSTSGIGLAIARTLAKAGANIVLNGFGAPDEIRTVTDEVAGLSS-GT-------VLHHPADMTKPSEIADMM 95 (281)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEECCCCHHHHHHHHHHHHTTCS-SC-------EEEECCCTTCHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHhhccC-Cc-------EEEEeCCCCCHHHHHHHH
Confidence 46789988887664 34556677999999998 66666555554443211 11 26778888764
Q ss_pred ------CCCccEEEEcccccc
Q 020710 217 ------DGKYDTVVCLDVLIH 231 (322)
Q Consensus 217 ------~~~fD~V~~~~~l~~ 231 (322)
-+..|+++.+..+..
T Consensus 96 ~~~~~~~g~iD~lv~nAg~~~ 116 (281)
T 3v2h_A 96 AMVADRFGGADILVNNAGVQF 116 (281)
T ss_dssp HHHHHHTSSCSEEEECCCCCC
T ss_pred HHHHHHCCCCCEEEECCCCCC
Confidence 368999998876543
|
| >3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=83.71 E-value=2.5 Score=36.32 Aligned_cols=75 Identities=27% Similarity=0.180 Sum_probs=50.9
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHH-------HHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAA-------MVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~-------~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~- 216 (322)
+++++|=.|++.|. ++..|++.|++|+.++.++. .++...+.....+... .++.+|+.+.
T Consensus 8 ~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~Dv~~~~ 78 (285)
T 3sc4_A 8 RGKTMFISGGSRGIGLAIAKRVAADGANVALVAKSAEPHPKLPGTIYTAAKEIEEAGGQA---------LPIVGDIRDGD 78 (285)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHHHTSEE---------EEEECCTTSHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECChhhhhhhhHHHHHHHHHHHhcCCcE---------EEEECCCCCHH
Confidence 46789988987764 45556667999999998865 3444444444333322 7888898774
Q ss_pred ------------CCCccEEEEcccccc
Q 020710 217 ------------DGKYDTVVCLDVLIH 231 (322)
Q Consensus 217 ------------~~~fD~V~~~~~l~~ 231 (322)
-+..|+++.+..+.+
T Consensus 79 ~v~~~~~~~~~~~g~id~lvnnAg~~~ 105 (285)
T 3sc4_A 79 AVAAAVAKTVEQFGGIDICVNNASAIN 105 (285)
T ss_dssp HHHHHHHHHHHHHSCCSEEEECCCCCC
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCCCC
Confidence 258999998876543
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} | Back alignment and structure |
|---|
Probab=83.67 E-value=3.3 Score=35.61 Aligned_cols=85 Identities=14% Similarity=0.192 Sum_probs=54.0
Q ss_pred CeEEEECC-Cc-c-cchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccCCCCccEEEEc
Q 020710 150 IAVCDAGC-GT-G-SLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESLDGKYDTVVCL 226 (322)
Q Consensus 150 ~~VLDvGc-G~-G-~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~fD~V~~~ 226 (322)
.+|.=||| |. | .++..|.+.|.+|+++|.+++.++.+.+ .+. .. .+..+.-...|+|+.
T Consensus 12 m~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~~~~~~~~~----~g~-----------~~--~~~~~~~~~aDvVi~- 73 (286)
T 3c24_A 12 KTVAILGAGGKMGARITRKIHDSAHHLAAIEIAPEGRDRLQG----MGI-----------PL--TDGDGWIDEADVVVL- 73 (286)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSHHHHHHHHH----TTC-----------CC--CCSSGGGGTCSEEEE-
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHh----cCC-----------Cc--CCHHHHhcCCCEEEE-
Confidence 47999999 84 3 3455566778999999999887766543 221 22 133333346899985
Q ss_pred ccccccCcchHHHHHHHHHhccC-CeEEEEE
Q 020710 227 DVLIHYPQSKADGMIAHLASLAE-KRLILSF 256 (322)
Q Consensus 227 ~~l~~~~~~~~~~~l~~l~~~~~-~~~il~~ 256 (322)
.+++.....+++.+...++ +..++.+
T Consensus 74 ----av~~~~~~~v~~~l~~~l~~~~ivv~~ 100 (286)
T 3c24_A 74 ----ALPDNIIEKVAEDIVPRVRPGTIVLIL 100 (286)
T ss_dssp ----CSCHHHHHHHHHHHGGGSCTTCEEEES
T ss_pred ----cCCchHHHHHHHHHHHhCCCCCEEEEC
Confidence 4454446678888876554 4455543
|
| >3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=83.61 E-value=3.8 Score=34.44 Aligned_cols=71 Identities=14% Similarity=0.047 Sum_probs=46.9
Q ss_pred CCeEEEECCCccc---chHHHHhcCCEEEEEeCC-HHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 149 GIAVCDAGCGTGS---LAIPLAKQGAIVSASDIS-AAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 149 ~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
++++|=.|++.|. ++..|++.|++|+.++-+ +...+...+.....+.. +.++.+|+.+.
T Consensus 7 ~k~vlVTGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~Dl~~~~~v~~~~~ 77 (264)
T 3i4f_A 7 VRHALITAGTKGLGKQVTEKLLAKGYSVTVTYHSDTTAMETMKETYKDVEER---------LQFVQADVTKKEDLHKIVE 77 (264)
T ss_dssp CCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHTGGGGGG---------EEEEECCTTSHHHHHHHHH
T ss_pred cCEEEEeCCCchhHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHhcCCc---------eEEEEecCCCHHHHHHHHH
Confidence 5678888877654 345566679999988654 45455554444333222 27888998775
Q ss_pred -----CCCccEEEEccc
Q 020710 217 -----DGKYDTVVCLDV 228 (322)
Q Consensus 217 -----~~~fD~V~~~~~ 228 (322)
-+..|+++.+..
T Consensus 78 ~~~~~~g~id~lv~~Ag 94 (264)
T 3i4f_A 78 EAMSHFGKIDFLINNAG 94 (264)
T ss_dssp HHHHHHSCCCEEECCCC
T ss_pred HHHHHhCCCCEEEECCc
Confidence 158999998776
|
| >3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=83.57 E-value=3.7 Score=34.92 Aligned_cols=71 Identities=23% Similarity=0.142 Sum_probs=50.2
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
.++++|=.|++.|. .+..|++.|++|+.+|.+++.++...+.. +. + +.++..|+.+.
T Consensus 10 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~---~~--~-------~~~~~~Dv~~~~~v~~~~~ 77 (271)
T 3tzq_B 10 ENKVAIITGACGGIGLETSRVLARAGARVVLADLPETDLAGAAASV---GR--G-------AVHHVVDLTNEVSVRALID 77 (271)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSCHHHHHHHH---CT--T-------CEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHh---CC--C-------eEEEECCCCCHHHHHHHHH
Confidence 46788988887664 45566677999999999887665554433 11 1 27888898764
Q ss_pred -----CCCccEEEEccccc
Q 020710 217 -----DGKYDTVVCLDVLI 230 (322)
Q Consensus 217 -----~~~fD~V~~~~~l~ 230 (322)
-+..|+++.+..+.
T Consensus 78 ~~~~~~g~id~lv~nAg~~ 96 (271)
T 3tzq_B 78 FTIDTFGRLDIVDNNAAHS 96 (271)
T ss_dssp HHHHHHSCCCEEEECCCCC
T ss_pred HHHHHcCCCCEEEECCCCC
Confidence 25899999887654
|
| >1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A* | Back alignment and structure |
|---|
Probab=83.45 E-value=2.6 Score=34.24 Aligned_cols=92 Identities=17% Similarity=0.185 Sum_probs=50.1
Q ss_pred eEEEEC-CCc-cc-chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhc-cCCCCCCCCCceEEcccccCCCCccEEEEc
Q 020710 151 AVCDAG-CGT-GS-LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLA-DNGGEAPVMPKFEVKDLESLDGKYDTVVCL 226 (322)
Q Consensus 151 ~VLDvG-cG~-G~-~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~-~~~~~~~~~~~~~~~d~~~~~~~fD~V~~~ 226 (322)
+|+=+| +|. |. ++..|++.|.+|+.+|.+++..+...+.... ... . .+...+..+.-...|+|+.+
T Consensus 2 ~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~~~~~~~~~~~~~-~~~~~---------~~~~~~~~~~~~~~D~Vi~~ 71 (212)
T 1jay_A 2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRR-IAGDA---------SITGMKNEDAAEACDIAVLT 71 (212)
T ss_dssp EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHH-HHSSC---------CEEEEEHHHHHHHCSEEEEC
T ss_pred eEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcc-ccccC---------CCChhhHHHHHhcCCEEEEe
Confidence 577788 664 22 3444556688999999998776655443221 010 0 12222332222357999854
Q ss_pred ccccccCcchHHHHHHHHHhccCCeEEEEEC
Q 020710 227 DVLIHYPQSKADGMIAHLASLAEKRLILSFA 257 (322)
Q Consensus 227 ~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~ 257 (322)
.+......+++.+...+++..++++.
T Consensus 72 -----~~~~~~~~~~~~l~~~~~~~~vi~~~ 97 (212)
T 1jay_A 72 -----IPWEHAIDTARDLKNILREKIVVSPL 97 (212)
T ss_dssp -----SCHHHHHHHHHHTHHHHTTSEEEECC
T ss_pred -----CChhhHHHHHHHHHHHcCCCEEEEcC
Confidence 33333456666665444555666554
|
| >4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=83.44 E-value=4.5 Score=34.26 Aligned_cols=73 Identities=25% Similarity=0.242 Sum_probs=48.8
Q ss_pred CCCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-------
Q 020710 147 LKGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL------- 216 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~------- 216 (322)
.+++.+|=-|.+.|. .+..|++.|++|+.+|.+.. +...+...+.+... .++..|+.+.
T Consensus 7 L~GKvalVTGas~GIG~aiA~~la~~Ga~Vvi~~r~~~--~~~~~~~~~~g~~~---------~~~~~Dv~d~~~v~~~~ 75 (247)
T 4hp8_A 7 LEGRKALVTGANTGLGQAIAVGLAAAGAEVVCAARRAP--DETLDIIAKDGGNA---------SALLIDFADPLAAKDSF 75 (247)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCC--HHHHHHHHHTTCCE---------EEEECCTTSTTTTTTSS
T ss_pred CCCCEEEEeCcCCHHHHHHHHHHHHcCCEEEEEeCCcH--HHHHHHHHHhCCcE---------EEEEccCCCHHHHHHHH
Confidence 357788887877776 35667777999999998753 22333333433322 6778887664
Q ss_pred -CCCccEEEEccccc
Q 020710 217 -DGKYDTVVCLDVLI 230 (322)
Q Consensus 217 -~~~fD~V~~~~~l~ 230 (322)
.+..|+++.+-.+.
T Consensus 76 ~~g~iDiLVNNAGi~ 90 (247)
T 4hp8_A 76 TDAGFDILVNNAGII 90 (247)
T ss_dssp TTTCCCEEEECCCCC
T ss_pred HhCCCCEEEECCCCC
Confidence 47899999876553
|
| >3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A* | Back alignment and structure |
|---|
Probab=83.34 E-value=5.8 Score=33.82 Aligned_cols=73 Identities=15% Similarity=0.074 Sum_probs=47.0
Q ss_pred CCCeEEEECCC----ccc-chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC------
Q 020710 148 KGIAVCDAGCG----TGS-LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL------ 216 (322)
Q Consensus 148 ~~~~VLDvGcG----~G~-~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~------ 216 (322)
++++||=.|++ .|. ++..|++.|++|+.+|.+. .+...+.+...... +.++.+|+.+.
T Consensus 25 ~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~--~~~~~~~l~~~~~~---------~~~~~~Dl~~~~~v~~~ 93 (280)
T 3nrc_A 25 AGKKILITGLLSNKSIAYGIAKAMHREGAELAFTYVGQ--FKDRVEKLCAEFNP---------AAVLPCDVISDQEIKDL 93 (280)
T ss_dssp TTCEEEECCCCSTTCHHHHHHHHHHHTTCEEEEEECTT--CHHHHHHHHGGGCC---------SEEEECCTTCHHHHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHcCCEEEEeeCch--HHHHHHHHHHhcCC---------ceEEEeecCCHHHHHHH
Confidence 46789998843 333 4566677799999999887 22222222222111 27888998764
Q ss_pred -------CCCccEEEEcccccc
Q 020710 217 -------DGKYDTVVCLDVLIH 231 (322)
Q Consensus 217 -------~~~fD~V~~~~~l~~ 231 (322)
-+..|+++.+..+.+
T Consensus 94 ~~~~~~~~g~id~li~nAg~~~ 115 (280)
T 3nrc_A 94 FVELGKVWDGLDAIVHSIAFAP 115 (280)
T ss_dssp HHHHHHHCSSCCEEEECCCCCC
T ss_pred HHHHHHHcCCCCEEEECCccCC
Confidence 368999998876644
|
| >1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6 | Back alignment and structure |
|---|
Probab=83.20 E-value=4.4 Score=35.80 Aligned_cols=103 Identities=20% Similarity=0.265 Sum_probs=55.8
Q ss_pred CeEEEECCCc-c-cchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccC-CCCCCCCCceEEcccccCCCCccEEEEc
Q 020710 150 IAVCDAGCGT-G-SLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADN-GGEAPVMPKFEVKDLESLDGKYDTVVCL 226 (322)
Q Consensus 150 ~~VLDvGcG~-G-~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~-~~~~~~~~~~~~~d~~~~~~~fD~V~~~ 226 (322)
.+|+=||+|. | .++..|++.|.+|+.+|.+++.++..++... ..+... .. ....+.....|..+.-..+|+|+.+
T Consensus 5 mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~vi~~ 82 (359)
T 1bg6_A 5 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGA-IIAEGPGLA-GTAHPDLLTSDIGLAVKDADVILIV 82 (359)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTS-EEEESSSCC-EEECCSEEESCHHHHHTTCSEEEEC
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHhcCC-eEEeccccc-cccccceecCCHHHHHhcCCEEEEe
Confidence 5799999985 3 2345566679999999999887776654321 000000 00 0000001223333323468999864
Q ss_pred ccccccCcchHHHHHHHHHhccCCeEEEEECCC
Q 020710 227 DVLIHYPQSKADGMIAHLASLAEKRLILSFAPK 259 (322)
Q Consensus 227 ~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~ 259 (322)
++......+++.+...++++.++...++
T Consensus 83 -----v~~~~~~~~~~~l~~~l~~~~~vv~~~~ 110 (359)
T 1bg6_A 83 -----VPAIHHASIAANIASYISEGQLIILNPG 110 (359)
T ss_dssp -----SCGGGHHHHHHHHGGGCCTTCEEEESSC
T ss_pred -----CCchHHHHHHHHHHHhCCCCCEEEEcCC
Confidence 3433356778888776655543433333
|
| >1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A* | Back alignment and structure |
|---|
Probab=83.17 E-value=5.5 Score=33.57 Aligned_cols=71 Identities=15% Similarity=0.148 Sum_probs=48.2
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
.+++||=.|++.|. .+..|+++|++|+.+|.+++..+...+..... +.++.+|+.+.
T Consensus 6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~------------~~~~~~D~~~~~~v~~~~~ 73 (260)
T 1nff_A 6 TGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAELADA------------ARYVHLDVTQPAQWKAAVD 73 (260)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTGGG------------EEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhhcC------------ceEEEecCCCHHHHHHHHH
Confidence 46778888877653 34556667999999999987665544333211 16778888764
Q ss_pred -----CCCccEEEEccccc
Q 020710 217 -----DGKYDTVVCLDVLI 230 (322)
Q Consensus 217 -----~~~fD~V~~~~~l~ 230 (322)
-+..|+++.+..+.
T Consensus 74 ~~~~~~g~iD~lv~~Ag~~ 92 (260)
T 1nff_A 74 TAVTAFGGLHVLVNNAGIL 92 (260)
T ss_dssp HHHHHHSCCCEEEECCCCC
T ss_pred HHHHHcCCCCEEEECCCCC
Confidence 14799999887654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 322 | ||||
| d1pjza_ | 201 | c.66.1.36 (A:) Thiopurine S-methyltransferase {Pse | 3e-11 | |
| d1xvaa_ | 292 | c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Ra | 3e-11 | |
| d1ve3a1 | 226 | c.66.1.43 (A:2-227) Hypothetical protein PH0226 {A | 4e-10 | |
| d1jqea_ | 280 | c.66.1.19 (A:) Histamine methyltransferase {Human | 1e-09 | |
| d2a14a1 | 257 | c.66.1.15 (A:5-261) Indolethylamine N-methyltransf | 4e-08 | |
| d1ri5a_ | 252 | c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransf | 7e-08 | |
| d1vl5a_ | 231 | c.66.1.41 (A:) Hypothetical protein BH2331 {Bacill | 5e-07 | |
| d2fyta1 | 311 | c.66.1.6 (A:238-548) Protein arginine N-methyltran | 8e-07 | |
| d1wy7a1 | 201 | c.66.1.32 (A:4-204) Hypothetical protein PH1948 {A | 2e-06 | |
| d1g6q1_ | 328 | c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Ba | 4e-06 | |
| d1u2za_ | 406 | c.66.1.31 (A:) Catalytic, N-terminal domain of his | 4e-06 | |
| d1nkva_ | 245 | c.66.1.21 (A:) Hypothetical Protein YjhP {Escheric | 6e-06 | |
| d1oria_ | 316 | c.66.1.6 (A:) Protein arginine N-methyltransferase | 8e-06 | |
| d1ne2a_ | 197 | c.66.1.32 (A:) Hypothetical protein Ta1320 {Archae | 1e-05 | |
| d1l3ia_ | 186 | c.66.1.22 (A:) Precorrin-6Y methyltransferase (Cbi | 2e-05 | |
| d2g72a1 | 263 | c.66.1.15 (A:18-280) Phenylethanolamine N-methyltr | 2e-05 | |
| d1yb2a1 | 250 | c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {T | 2e-05 | |
| d1xxla_ | 234 | c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus | 2e-05 | |
| d1xtpa_ | 254 | c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa | 2e-05 | |
| d1y8ca_ | 246 | c.66.1.43 (A:) Putative methyltransferase CAC2371 | 4e-05 | |
| d1nw3a_ | 328 | c.66.1.31 (A:) Catalytic, N-terminal domain of his | 6e-05 | |
| d2p7ia1 | 225 | c.66.1.41 (A:22-246) Hypothetical protein ECA1738 | 6e-05 | |
| d2i6ga1 | 198 | c.66.1.44 (A:1-198) Putative methyltransferase Teh | 9e-05 | |
| d2b25a1 | 324 | c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 | 1e-04 | |
| d1o54a_ | 266 | c.66.1.13 (A:) Hypothetical protein TM0748 {Thermo | 1e-04 | |
| d1zx0a1 | 229 | c.66.1.16 (A:8-236) Guanidinoacetate methyltransfe | 1e-04 | |
| d2frna1 | 260 | c.66.1.47 (A:19-278) Hypothetical protein PH0793 { | 2e-04 | |
| d2igta1 | 309 | c.66.1.51 (A:1-309) Putative methyltransferase Atu | 4e-04 | |
| d2gh1a1 | 281 | c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bac | 6e-04 | |
| d1g8sa_ | 230 | c.66.1.3 (A:) Fibrillarin homologue {Archaeon Meth | 9e-04 | |
| d1i9ga_ | 264 | c.66.1.13 (A:) Probable methyltransferase Rv2118c | 0.002 | |
| d1nt2a_ | 209 | c.66.1.3 (A:) Fibrillarin homologue {Archaeon Arch | 0.002 | |
| d1vl8a_ | 251 | c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga | 0.004 |
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} Length = 201 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Score = 59.7 bits (143), Expect = 3e-11
Identities = 34/192 (17%), Positives = 58/192 (30%), Gaps = 17/192 (8%)
Query: 139 QMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADN 198
Q + + G V CG L+ QG V +++S A V + E+ +
Sbjct: 11 QYWSSLNVVPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITS 70
Query: 199 GGEAPVMPKFEVKDL--------ESLDGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEK 250
G+ V ++ G +I P + + HL +L +
Sbjct: 71 QGDFKVYAAPGIEIWCGDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQ 130
Query: 251 --RLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQKVGWKIRKRGLIT 308
+L YD G F P + +V + + RGL
Sbjct: 131 ACSGLLIT----LEYDQALLEGPPFSVPQTWLHRVMSGNWEVTKVGGQDTLHSSARGL-- 184
Query: 309 TQFYFARLVEAV 320
+ R+ E V
Sbjct: 185 -KAGLERMDEHV 195
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 292 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 60.7 bits (146), Expect = 3e-11
Identities = 37/227 (16%), Positives = 68/227 (29%), Gaps = 18/227 (7%)
Query: 90 GGGDKEVVREYFNNSGFQRWKKIYGETDDVNRVQLDIRLGHSKTVENTMQMLNDEGSLKG 149
G + + +Y + + W+ G+T R K + +L G +
Sbjct: 11 GVAAEGIPDQYADGEAARVWQLYIGDTR--------SRTAEYK--AWLLGLLRQHGCHR- 59
Query: 150 IAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADN--GGEAPVMPK 207
V D CGTG +I L ++G V++ D S M+ A K+
Sbjct: 60 --VLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANW 117
Query: 208 FEVKDLESLDGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPK-TFYYDLL 266
+ +D V+CL + H +L ++ P D
Sbjct: 118 LTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMV--RPGGLLVIDHR 175
Query: 267 KRVGELFPGPSKATRAYLHAEADVERALQKVGWKIRKRGLITTQFYF 313
L G + + + + V K ++T +
Sbjct: 176 NYDYILSTGCAPPGKNIYYKSDLTKDITTSVLTVNNKAHMVTLDYTV 222
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 226 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 56.7 bits (135), Expect = 4e-10
Identities = 39/228 (17%), Positives = 80/228 (35%), Gaps = 24/228 (10%)
Query: 105 GFQRWKKIYGETDDVNRVQLDIRLGHSKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAI 164
GF+ + +++ D+N + R+ E +L +G V D CG G +
Sbjct: 1 GFKEYYRVFPTYTDINSQEYRSRI------ETLEPLLMKYMKKRGK-VLDLACGVGGFSF 53
Query: 165 PLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESLDGKYDTVV 224
L G V DIS M+ +AR+ A+ + + + L D +D V+
Sbjct: 54 LLEDYGFEVVGVDISEDMIRKAREYAK------SRESNVEFIVGDARKLSFEDKTFDYVI 107
Query: 225 CLDVLIHYPQSKADGMIAHLASLAEK--RLILSFAPKTFYYDLLKR---------VGELF 273
+D ++H+ + + + + + + + I+ F LK + ++
Sbjct: 108 FIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTDLRELLPRLKESLVVGQKYWISKVI 167
Query: 274 PGPSKATRAYLHAEADVERALQKVGWKIRKRGLITTQFYFARLVEAVP 321
P + T ++ W L+ ++ E V
Sbjct: 168 PDQEERTVVIEFKSEQDSFRVRFNVWGKTGVELLAKLYFTKEAEEKVG 215
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.2 bits (134), Expect = 1e-09
Identities = 30/213 (14%), Positives = 65/213 (30%), Gaps = 27/213 (12%)
Query: 105 GFQRWKKIYGETDDVNRVQLDIRLGHSKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAI 164
F+R+ E + K + + + D S I + G G G + +
Sbjct: 6 SFRRFLNHSTEHQCMQEFM-------DKKLPGIIGRIGDTKS--EIKILSIGGGAGEIDL 56
Query: 165 PLAKQ--------GAIVSASDISAAMVAEARKKAEEELLA----DNGGEAPVMPKFEVKD 212
+ + + SA +A+ ++ + +
Sbjct: 57 QILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRML 116
Query: 213 LESLDGKYDTVVCLDVLIHYPQSKADGMIAHLASLAE--KRLILSFAPKTFYYDLLKRVG 270
+ K+D + + +L +Y + + + L K LI+ + + + L K+ G
Sbjct: 117 EKKELQKWDFIHMIQML-YYVKDIPATLKFFHSLLGTNAKMLIIVVSGSSGWDKLWKKYG 175
Query: 271 ELFPGPSKATRAYLHAEADVERALQKVGWKIRK 303
FP D+ + L +G K
Sbjct: 176 SRFPQDDLCQ---YITSDDLTQMLDNLGLKYEC 205
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} Length = 257 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.2 bits (121), Expect = 4e-08
Identities = 33/244 (13%), Positives = 67/244 (27%), Gaps = 51/244 (20%)
Query: 94 KEVVREYFNNSGFQRWKKIYGETDDVNRVQLDIRLGHSKTVENTMQMLNDEGSLKGIAVC 153
+ +++F + Y + ++ K + G L+G +
Sbjct: 4 GDEYQKHFLPRDY--LATYYSFDGS-PSPEAEML----KFNLECLHKTFGPGGLQGDTLI 56
Query: 154 DAGCGTGSLAIPL-AKQGAIVSASDISAAMVAEARKKAEEELLADN-------------- 198
D G G + ++ SD + E K ++E A +
Sbjct: 57 DIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGN 116
Query: 199 ------------GGEAPVMPKFEVKDLESL---DGKYDTVVCLDVLIHYPQSKAD--GMI 241
V+ D V+ L + S +
Sbjct: 117 SGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAAL 176
Query: 242 AHLASLAEK--RLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQKVGW 299
+LASL + L+ + + Y + KR + +VE+A+ G+
Sbjct: 177 CNLASLLKPGGHLVTTVTLRLPSYMVGKR----------EFSCVALEKGEVEQAVLDAGF 226
Query: 300 KIRK 303
I +
Sbjct: 227 DIEQ 230
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} Length = 252 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Score = 50.3 bits (119), Expect = 7e-08
Identities = 17/104 (16%), Positives = 32/104 (30%), Gaps = 12/104 (11%)
Query: 140 MLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAI-VSASDISAAMVAEARKKAEEELLADN 198
L + +G +V D GCG G + + G DI+ + +AR +A
Sbjct: 16 CLIRLYTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRF- 74
Query: 199 GGEAPVMPKFEVKDLESL----DGKYDTVVCLDVLIHYPQSKAD 238
F +D ++D + + +
Sbjct: 75 ------KVFFRAQDSYGRHMDLGKEFDVISSQFSFHYAFSTSES 112
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Score = 47.7 bits (112), Expect = 5e-07
Identities = 24/167 (14%), Positives = 50/167 (29%), Gaps = 6/167 (3%)
Query: 152 VCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVK 211
V D G G +A A V A D++ ++ AR + G V
Sbjct: 19 VLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAF------IEGNGHQQVEYVQGDA 72
Query: 212 DLESLDGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGE 271
+ + +V + H+ + A + L + +L D
Sbjct: 73 EQMPFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSAPENDAFDVFYN 132
Query: 272 LFPGPSKATRAYLHAEADVERALQKVGWKIRKRGLITTQFYFARLVE 318
+ ++D + L++ G+++ + F F +
Sbjct: 133 YVEKERDYSHHRAWKKSDWLKMLEEAGFELEELHCFHKTFIFEDWCD 179
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 311 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.6 bits (112), Expect = 8e-07
Identities = 23/119 (19%), Positives = 43/119 (36%), Gaps = 20/119 (16%)
Query: 140 MLNDE--------------GSLKGIAVCDAGCGTGSLAIPLAKQGA-IVSASDISAAMVA 184
ML D+ K V D GCGTG L++ AK GA V D S +
Sbjct: 13 MLKDKIRTESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILY- 71
Query: 185 EARKKAEEELLADNGGEAPVMPKFEVKDLESLDGKYDTVVCLDVLIHYPQSKADGMIAH 243
+A + + + + + K +++++ K D ++ + + +
Sbjct: 72 ----QAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMGYFLLFESMLDSVLY 126
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 201 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 45.2 bits (106), Expect = 2e-06
Identities = 32/194 (16%), Positives = 58/194 (29%), Gaps = 42/194 (21%)
Query: 138 MQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGA-IVSASDISAAMVAEARKKAEEELLA 196
+ + G ++G V D G GTG L+ GA V ++ V +
Sbjct: 36 LWLAYSLGDIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLG----- 90
Query: 197 DNGGEAPVMPKFEVKDLESLDGKYDTVVC------------LDVLIHYPQSKADGMIAHL 244
E K + D+ + + D V+ L+ + HL
Sbjct: 91 ----EFKGKFKVFIGDVSEFNSRVDIVIMNPPFGSQRKHADRPFLLKAFEISDVVYSIHL 146
Query: 245 ASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQKVGWKIRKR 304
A +R I F+ + + R+ P + +K
Sbjct: 147 AKPEVRRFIEKFS-WEHGFVVTHRLTTKIEIP----LQFFFHR--------------KKL 187
Query: 305 GLITTQFY-FARLV 317
IT Y F++++
Sbjct: 188 ERITVDIYRFSKVI 201
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 328 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 45.6 bits (107), Expect = 4e-06
Identities = 18/68 (26%), Positives = 26/68 (38%), Gaps = 14/68 (20%)
Query: 140 MLNDE--------------GSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAE 185
ML D K V D GCGTG L++ AK GA ++++
Sbjct: 16 MLQDTVRTLSYRNAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSSIIEM 75
Query: 186 ARKKAEEE 193
A++ E
Sbjct: 76 AKELVELN 83
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 406 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 45.8 bits (108), Expect = 4e-06
Identities = 28/193 (14%), Positives = 50/193 (25%), Gaps = 30/193 (15%)
Query: 139 QMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEE---- 192
+ KG D G G G+ + A + A+ +I + EE
Sbjct: 207 DVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKR 266
Query: 193 -ELLADNGGEAPVMPKFEVKDLESLDGKYD--TVVCLDVLIHYPQ-----------SKAD 238
+L K D + V+ ++ + +K
Sbjct: 267 CKLYGMRLNNVEFSLKKSFVDNNRVAELIPQCDVILVNNFLFDEDLNKKVEKILQTAKVG 326
Query: 239 GMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGP------SKATRAYLHAEADVER 292
I L SL ++F ++ LK V Y+ V
Sbjct: 327 CKIISLKSLRSLTYQINFYNVENIFNRLK-VQRYDLKEDSVSWTHSGGEYYIS---TVME 382
Query: 293 ALQKVGWKIRKRG 305
+ + + RG
Sbjct: 383 DVDESLFSPAARG 395
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Length = 245 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Score = 44.6 bits (104), Expect = 6e-06
Identities = 29/194 (14%), Positives = 67/194 (34%), Gaps = 18/194 (9%)
Query: 111 KIYGETDDVNRVQLDIRLGHSKTVENTMQMLNDEGSLK-GIAVCDAGCGTGSLAIPLAKQ 169
+I+ ++ +R+ H+ E L +K G + D G G+G + A+
Sbjct: 2 RIFTISESEHRI-------HNPFTEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARD 54
Query: 170 -GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESLDGKYDTVVCLDV 228
G + D+S+ A+A+++AEE +++ V + K D C+
Sbjct: 55 HGITGTGIDMSSLFTAQAKRRAEELGVSER-----VHFIHNDAAGYVANEKCDVAACVGA 109
Query: 229 LIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEA 288
+ + +++ Y+ L E+ ++ +
Sbjct: 110 TWIAGGFAGAEELLAQSLKPGGIMLIG----EPYWRQLPATEEIAQACGVSSTSDFLTLP 165
Query: 289 DVERALQKVGWKIR 302
+ A +G+ +
Sbjct: 166 GLVGAFDDLGYDVV 179
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 316 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 44.4 bits (104), Expect = 8e-06
Identities = 19/70 (27%), Positives = 24/70 (34%), Gaps = 15/70 (21%)
Query: 140 MLNDE--------------GSLKGIAVCDAGCGTGSLAIPLAKQGA-IVSASDISAAMVA 184
ML DE K V D G GTG L + AK GA V + S+
Sbjct: 11 MLKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDY 70
Query: 185 EARKKAEEEL 194
+ +L
Sbjct: 71 AVKIVKANKL 80
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 197 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 43.2 bits (101), Expect = 1e-05
Identities = 34/170 (20%), Positives = 53/170 (31%), Gaps = 26/170 (15%)
Query: 145 GSLKGIAVCDAGCGTGSLAIPLAKQG-AIVSASDISAAMVAEARKKAEEELLADNGGEAP 203
G++ G +V DAG G G LA G V+A DI + A++
Sbjct: 45 GNIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG------------ 92
Query: 204 VMPKFEVKDLESLDGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYY 263
F V D+ + GKYDT + + +D A F + Y
Sbjct: 93 -GVNFMVADVSEISGKYDTWIM-NPPFGSVVKHSDRAFIDKA----------FETSMWIY 140
Query: 264 DLLKRVGELFPGPSKATRAYLHAEADVERAL-QKVGWKIRKRGLITTQFY 312
+ F + R + E V + + R I +
Sbjct: 141 SIGNAKARDFLRREFSARGDVFREEKVYITVPRIYRHHSYDRARIEAVIF 190
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Score = 42.5 bits (99), Expect = 2e-05
Identities = 18/90 (20%), Positives = 26/90 (28%), Gaps = 10/90 (11%)
Query: 148 KGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPK 207
K D GCGTG + + LA + V A D + ++ + L DN
Sbjct: 33 KNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGLGDN-------VT 85
Query: 208 FEVKDLESL---DGKYDTVVCLDVLIHYPQ 234
D D V +
Sbjct: 86 LMEGDAPEALCKIPDIDIAVVGGSGGELQE 115
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} Length = 263 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.3 bits (101), Expect = 2e-05
Identities = 30/197 (15%), Positives = 58/197 (29%), Gaps = 48/197 (24%)
Query: 144 EGSLKGIAVCDAGCGTGSLAIPLA-KQGAIVSASDISAAMVAEARKKAEEELLA------ 196
G + G + D G G + A ++ +D E + +EE A
Sbjct: 50 TGEVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMY 109
Query: 197 -----------DNGGEAPVMPKFEVKDLESLD--------------GKYDTVVCLDVLIH 231
+ + + VK + +D D +V L
Sbjct: 110 SQHACLIEGKGECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEA 169
Query: 232 YPQSKAD--GMIAHLASLAEKR---LILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHA 286
A + H+ +L L++ +++Y R+ +
Sbjct: 170 VSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEARL-----------TVVPVS 218
Query: 287 EADVERALQKVGWKIRK 303
E +V AL + G+K+R
Sbjct: 219 EEEVREALVRSGYKVRD 235
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Score = 43.1 bits (101), Expect = 2e-05
Identities = 9/86 (10%), Positives = 26/86 (30%), Gaps = 3/86 (3%)
Query: 149 GIAVCDAGCGTGSLAIPLAKQ---GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVM 205
G+ + + G G+G+++ + ++ + + +A E N +
Sbjct: 86 GMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSD 145
Query: 206 PKFEVKDLESLDGKYDTVVCLDVLIH 231
+ D D + +
Sbjct: 146 IADFISDQMYDAVIADIPDPWNHVQK 171
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Length = 234 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Score = 42.6 bits (99), Expect = 2e-05
Identities = 21/186 (11%), Positives = 48/186 (25%), Gaps = 7/186 (3%)
Query: 135 ENTMQMLNDEGSLK-GIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEE 193
+++ ++ + V D G G G A+ + D + MV A A
Sbjct: 2 HHSLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFA--- 58
Query: 194 LLADNGGEAPVMPKFEVKDLESLDGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLI 253
+ G E + + L D +D + C H+ + L +
Sbjct: 59 --QEKGVENVRFQQGTAESLPFPDDSFDIITCRYAAHHFSD-VRKAVREVARVLKQDGRF 115
Query: 254 LSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQKVGWKIRKRGLITTQFYF 313
L +L + + ++ + + +
Sbjct: 116 LLVDHYAPEDPVLDEFVNHLNRLRDPSHVRESSLSEWQAMFSANQLAYQDIQKWNLPIQY 175
Query: 314 ARLVEA 319
++
Sbjct: 176 DSWIKR 181
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Score = 42.7 bits (99), Expect = 2e-05
Identities = 13/103 (12%), Positives = 32/103 (31%), Gaps = 5/103 (4%)
Query: 83 QLQAEEVGGGDKEVVREYFNNSGFQRWKKIYGETDDVNRVQLDIRLGHSKTVENTMQMLN 142
++ E+ G + + ++ + W+ + V+ V + H +E + +
Sbjct: 32 EMWKAELTGDLYDPEKGWYGK-ALEYWRTV---PATVSGVLGGMDHVHDVDIEGSRNFIA 87
Query: 143 DEGSLKGIAVCDAGCGTGSLAIPLAKQGA-IVSASDISAAMVA 184
D G G G + L + + M+
Sbjct: 88 SLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLE 130
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} Length = 246 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Score = 42.0 bits (97), Expect = 4e-05
Identities = 17/73 (23%), Positives = 28/73 (38%), Gaps = 8/73 (10%)
Query: 106 FQRWKKIYGETDDVNRVQLDIRLGHSKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIP 165
+ ++ IY D + R +D + +E E +L D CGTG+L
Sbjct: 3 YNKFAHIY---DKLIRADVDYKKWSDFIIE-----KCVENNLVFDDYLDLACGTGNLTEN 54
Query: 166 LAKQGAIVSASDI 178
L + A D+
Sbjct: 55 LCPKFKNTWAVDL 67
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} Length = 328 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.8 bits (97), Expect = 6e-05
Identities = 18/150 (12%), Positives = 44/150 (29%), Gaps = 8/150 (5%)
Query: 93 DKEVVREYFNNSGFQRWKKIYGETDDVNRVQLDIRLGHSKTVENTMQMLNDEGSLK-GIA 151
+ + Q + + + +N + + +T + + + DE +
Sbjct: 95 NTRPSTGLLRHILQQVYNHSVTDPEKLNNYEPFSPEVYGETSFDLVAQMIDEIKMTDDDL 154
Query: 152 VCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEE-ELLADNGGEAPVMPKF 208
D G G G + + +A + + A E G+
Sbjct: 155 FVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTL 214
Query: 209 EVKDLESLDGKYD----TVVCLDVLIHYPQ 234
E D S + + +V+ ++ P+
Sbjct: 215 ERGDFLSEEWRERIANTSVIFVNNFAFGPE 244
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} Length = 225 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Score = 41.4 bits (96), Expect = 6e-05
Identities = 4/36 (11%), Positives = 11/36 (30%)
Query: 147 LKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAM 182
+ + + G G L + ++ + S
Sbjct: 19 FRPGNLLELGSFKGDFTSRLQEHFNDITCVEASEEA 54
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Score = 40.7 bits (94), Expect = 9e-05
Identities = 22/109 (20%), Positives = 41/109 (37%), Gaps = 6/109 (5%)
Query: 139 QMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADN 198
+L + D GCG G ++ LA G V+A D + A +A + E L +
Sbjct: 21 DVLAAAKVVAPGRTLDLGCGNGRNSLYLAANGYDVTAWDKNPASMANLERIKAAEGLDNL 80
Query: 199 GGEAPVMPKFEVKDLESLDGKYDTVVCLDVLIHYPQSKADGMIAHLASL 247
+ + +YD ++ V++ G+IA++
Sbjct: 81 QTDLVDLNTLTFDG------EYDFILSTVVMMFLEAQTIPGLIANMQRC 123
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} Length = 324 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.9 bits (95), Expect = 1e-04
Identities = 21/102 (20%), Positives = 38/102 (37%), Gaps = 12/102 (11%)
Query: 138 MQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ---GAIVSASDISAAMVAEARKKAEE-- 192
+L+ G V +AG G+G +++ L+K V + ++ A+K +
Sbjct: 88 NMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWR 147
Query: 193 -ELLADNGGEAPVMPKFEVKDLESL-----DGKYDTVVCLDV 228
+ E P F KD+ +D V LD+
Sbjct: 148 DSWKLSHVEEWPDNVDFIHKDISGATEDIKSLTFD-AVALDM 188
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Score = 40.9 bits (95), Expect = 1e-04
Identities = 11/66 (16%), Positives = 23/66 (34%), Gaps = 3/66 (4%)
Query: 136 NTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ---GAIVSASDISAAMVAEARKKAEE 192
++ + +G + D G G+G++ LA+ V A + A +
Sbjct: 91 DSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTK 150
Query: 193 ELLADN 198
L +
Sbjct: 151 WGLIER 156
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.0 bits (92), Expect = 1e-04
Identities = 29/168 (17%), Positives = 51/168 (30%), Gaps = 13/168 (7%)
Query: 138 MQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQG-AIVSASDISAAMVAEARKKAEEELLA 196
M L S KG V + G G A + + + + + R A +
Sbjct: 43 MHALAAAASSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHK 102
Query: 197 DNGGEAPVMPKFEVKDLESLDGKY-DTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILS 255
+ DG DT + H Q + H L + +L+
Sbjct: 103 VIPLKGLWEDVAPTLPDGHFDGILYDTYPLSEETWHTHQFNF--IKNHAFRLLKPGGVLT 160
Query: 256 FAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQKVGWKIRK 303
+ T + +L+K SK + + E AL + G++
Sbjct: 161 YCNLTSWGELMK---------SKYSDITIMFEETQVPALLEAGFRREN 199
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} Length = 260 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Score = 40.1 bits (93), Expect = 2e-04
Identities = 30/229 (13%), Positives = 59/229 (25%), Gaps = 50/229 (21%)
Query: 78 PERRRQLQAEEVGGGDKE-VVREYFNNSGFQRWKKIYGETDDVNRVQLDIRLGHSKTVEN 136
R+ E + G D V E K ++ + RV++ + V
Sbjct: 54 HGETRKPDYELLYGSDTVTVHVENGIKYKLDVAKIMFSPANVKERVRMAKVAKPDELV-- 111
Query: 137 TMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAI-VSASDISAAMVAEARKKAEEELL 195
D G G L++P+A G V A + + +
Sbjct: 112 ----------------VDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKV 155
Query: 196 ADNGGEAPVMPKFEVKDLESLDGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILS 255
D + +D ++ AD ++ +
Sbjct: 156 EDRM----------------------SAYNMDNRDFPGENIADRILMGYVVRTHE----- 188
Query: 256 FAPKTFYYDLLKRVGEL-FPGPSKATRAYLHAEADVERALQKVGWKIRK 303
F PK + K + + +R ++ G+ + K
Sbjct: 189 FIPK--ALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDVEK 235
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} Length = 309 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Score = 39.0 bits (90), Expect = 4e-04
Identities = 30/243 (12%), Positives = 67/243 (27%), Gaps = 24/243 (9%)
Query: 87 EEVGGGDKEVVREYFNNSGFQRWKKIYGETDDVNRVQLDIRLGHSKTVENTMQMLNDEGS 146
+E G G +E + + + + E +
Sbjct: 73 DEDGMGRWRFPKEALGETWPLSLLGVEFLGRFTAFRHVGVFPEQIVHWEWLKNAVETAD- 131
Query: 147 LKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMP 206
+ + V + TG ++ A GA V+ D S + A++ L
Sbjct: 132 -RPLKVLNLFGYTGVASLVAAAAGAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICED 190
Query: 207 KFE-VKDLESLDGKYDTVVCLDV--LIHYPQSKADGMIAHLASLAEKRLILSFAPKTFY- 262
+ ++ E YD ++ D + + HL + + +
Sbjct: 191 AMKFIQREERRGSTYD-IILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLV 249
Query: 263 ----------YDLLKRVGELFPGPSKATRAYLHAEADVERALQKVGWKIRKRGLITTQFY 312
Y + + + E G + E +++ G + G + +
Sbjct: 250 LTAYSIRASFYSMHELMRETMRGAGGVVAS-------GELVIREAGLDGKTPGRVLSTSL 302
Query: 313 FAR 315
F+R
Sbjct: 303 FSR 305
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Score = 38.7 bits (89), Expect = 6e-04
Identities = 21/89 (23%), Positives = 33/89 (37%), Gaps = 10/89 (11%)
Query: 148 KGIAVCDAGCGTGSLAIPLAK---QGAIVSASDISAAMVAEARKKAEEELLADNGGEAPV 204
K + + D GCG G L + L +G+ + D ++AEAR+
Sbjct: 27 KPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEAREL-------FRLLPYDS 79
Query: 205 MPKFEVKDLESLDGKYDTVVCLDVLIHYP 233
L+ KYD +C L+H
Sbjct: 80 EFLEGDATEIELNDKYDIAICHAFLLHMT 108
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 37.8 bits (87), Expect = 9e-04
Identities = 8/48 (16%), Positives = 16/48 (33%), Gaps = 2/48 (4%)
Query: 148 KGIAVCDAGCGTGSLAIPLAKQG--AIVSASDISAAMVAEARKKAEEE 193
+ + G G+ +A IV A + + ++ E E
Sbjct: 74 RDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER 121
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 264 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 36.9 bits (85), Expect = 0.002
Identities = 25/109 (22%), Positives = 40/109 (36%), Gaps = 15/109 (13%)
Query: 130 HSKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAK---QGAIVSASDISAAMVAEA 186
+ K + + G V +AG G+G+L + L + V + + A A
Sbjct: 81 YPKDAAQIVHEGDIF---PGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHA 137
Query: 187 RKKAEEELLADNGGEAPVMPKFEVKDLES---LDGKYDTVVCLDVLIHY 232
R+ G+ P + V DL DG D V LD+L +
Sbjct: 138 RRNVSGC-----YGQPPDNWRLVVSDLADSELPDGSVDRAV-LDMLAPW 180
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 209 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 36.2 bits (83), Expect = 0.002
Identities = 14/112 (12%), Positives = 31/112 (27%), Gaps = 10/112 (8%)
Query: 148 KGIAVCDAGCGTGSLAIPLAKQGAI--VSASDISAAMVAEARKKAEEELLADNGGEAPVM 205
V G +G+ LA + A + SA + + + P+
Sbjct: 56 GDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVR-----ERNNIIPL- 109
Query: 206 PKFEVKDLESLDGKYDTV-VCLDVLIHYPQSKADGMIAHLASLAEKRLILSF 256
F+ G + V + + Q + A + +++
Sbjct: 110 -LFDASKPWKYSGIVEKVDLIYQDIAQKNQIEILKANAEFFLKEKGEVVIMV 160
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Score = 35.8 bits (82), Expect = 0.004
Identities = 20/93 (21%), Positives = 35/93 (37%), Gaps = 12/93 (12%)
Query: 146 SLKG--IAVCDAGCGTG-SLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEA 202
L+G V G G +A LA+ G V + + +EA ++L G E
Sbjct: 2 DLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAA----QKLTEKYGVET 57
Query: 203 PVMPKFEVKDLESLDGKYDTVV----CLDVLIH 231
+V + E + + V LD +++
Sbjct: 58 MAFR-CDVSNYEEVKKLLEAVKEKFGKLDTVVN 89
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 322 | |||
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.92 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.91 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.88 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.87 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.86 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.86 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.86 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.85 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.85 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.85 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.85 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.85 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.84 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.83 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.83 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.8 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.8 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.8 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.8 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.79 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.77 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.77 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.75 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.74 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.74 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.74 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.72 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.67 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.67 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.64 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.64 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.61 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.6 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.52 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 99.51 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.51 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.5 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.46 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.45 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.45 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 99.43 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.42 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.4 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 99.4 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 99.38 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 99.37 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 99.36 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 99.34 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 99.32 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 99.32 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 99.32 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 99.32 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.32 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 99.3 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 99.3 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 99.3 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 99.23 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 99.23 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 99.23 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 99.22 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 99.21 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 99.21 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 99.2 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 99.19 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 99.11 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 99.1 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 99.1 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 99.09 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 99.06 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 99.06 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 99.01 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 99.01 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 99.0 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 98.88 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 98.67 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 98.64 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 98.56 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 98.53 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 98.48 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 98.48 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 98.42 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 98.38 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 98.36 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 98.35 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 98.33 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 98.32 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 98.31 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 98.28 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 98.28 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 98.17 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 98.13 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 97.79 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 97.67 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 97.63 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 97.62 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 97.61 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 97.48 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 97.45 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 97.27 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 97.05 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 96.82 | |
| d1dcta_ | 324 | DNA methylase HaeIII {Haemophilus aegyptius [TaxId | 96.81 | |
| d2c7pa1 | 327 | DNA methylase HhaI {Haemophilus haemolyticus [TaxI | 96.8 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 96.79 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 96.78 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 96.68 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 96.67 | |
| d2uyoa1 | 297 | Putative methyltransferase ML2640 {Mycobacterium l | 96.64 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 96.54 | |
| d1g55a_ | 343 | DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | 96.4 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 96.38 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 96.18 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 96.09 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 95.98 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 95.82 | |
| d1zkda1 | 365 | Hypothetical protein RPA4359 {Rhodopseudomonas pal | 95.63 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 95.56 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 95.4 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 95.36 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 95.24 | |
| d1o9ga_ | 249 | rRNA methyltransferase AviRa {Streptomyces viridoc | 95.19 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 94.88 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 94.83 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 94.78 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 94.72 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 94.64 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 94.34 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 94.29 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 94.21 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 94.2 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 94.19 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 94.0 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 93.73 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 93.7 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 93.67 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 93.45 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 93.37 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 93.34 | |
| d1rjda_ | 328 | Leucine carboxy methyltransferase Ppm1 {Baker's ye | 93.28 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 93.24 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 93.21 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 93.06 | |
| d1j6ua1 | 89 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 92.91 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 92.85 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 92.81 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 92.79 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 92.53 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 92.5 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 92.24 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 92.16 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 91.97 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 91.92 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 91.89 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 91.56 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 91.54 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 91.5 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 91.27 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 91.23 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 90.88 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 90.84 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 90.78 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 90.63 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 90.52 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 90.08 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 89.9 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 89.87 | |
| d2py6a1 | 395 | Methyltransferase FkbM {Methylobacillus flagellatu | 89.71 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 89.7 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 89.46 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 89.39 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 89.18 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 88.99 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 88.98 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 88.82 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 88.68 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 88.61 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 88.58 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 88.55 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 88.23 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 88.18 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 88.05 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 88.02 | |
| d1bdba_ | 276 | Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps | 87.77 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 87.74 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 87.19 | |
| d1geea_ | 261 | Glucose dehydrogenase {Bacillus megaterium [TaxId: | 86.74 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 86.45 | |
| d2pd4a1 | 274 | Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2 | 85.73 | |
| d1qsga_ | 258 | Enoyl-ACP reductase {Escherichia coli [TaxId: 562] | 85.28 | |
| d2d1ya1 | 248 | Hypothetical protein TTHA0369 {Thermus thermophilu | 85.11 | |
| d1ulua_ | 256 | Enoyl-ACP reductase {Thermus thermophilus [TaxId: | 84.7 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 83.82 | |
| d2ew8a1 | 247 | (s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb | 83.56 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 82.65 | |
| d2bd0a1 | 240 | Bacterial sepiapterin reductase {Chlorobium tepidu | 82.31 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 81.92 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 81.05 | |
| d1o5ia_ | 234 | beta-keto acyl carrier protein reductase {Thermoto | 80.41 |
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.92 E-value=6.4e-25 Score=187.72 Aligned_cols=169 Identities=18% Similarity=0.230 Sum_probs=127.2
Q ss_pred HHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccc
Q 020710 135 ENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLE 214 (322)
Q Consensus 135 ~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 214 (322)
.++++.+.. .++.+|||||||+|.++..+++.+.+|+|+|+|+.|++.|++++...+..+ ++|+++|++
T Consensus 5 ~~ll~~~~l---~~~~rVLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~i~~A~~~~~~~~~~~--------i~~~~~d~~ 73 (231)
T d1vl5a_ 5 AKLMQIAAL---KGNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGHQQ--------VEYVQGDAE 73 (231)
T ss_dssp HHHHHHHTC---CSCCEEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCCS--------EEEEECCC-
T ss_pred HHHHHhcCC---CCcCEEEEecccCcHHHHHHHHhCCEEEEEECCHHHHhhhhhccccccccc--------ccccccccc
Confidence 566666554 368999999999999999999999999999999999999999988776543 489999998
Q ss_pred cC---CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEEC----CCh-hhHHHHHHhhccCCCCCCccccccCC
Q 020710 215 SL---DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFA----PKT-FYYDLLKRVGELFPGPSKATRAYLHA 286 (322)
Q Consensus 215 ~~---~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (322)
++ +++||+|+|..+++|+++++ .+++++.+++++||.+.+. +.. ....+......... ..+...++
T Consensus 74 ~l~~~~~~fD~v~~~~~l~~~~d~~--~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 147 (231)
T d1vl5a_ 74 QMPFTDERFHIVTCRIAAHHFPNPA--SFVSEAYRVLKKGGQLLLVDNSAPENDAFDVFYNYVEKERD----YSHHRAWK 147 (231)
T ss_dssp CCCSCTTCEEEEEEESCGGGCSCHH--HHHHHHHHHEEEEEEEEEEEEEBCSSHHHHHHHHHHHHHHC----TTCCCCCB
T ss_pred cccccccccccccccccccccCCHH--HHHHHHHHhcCCCcEEEEEeCCCCCCHHHHHHHHHHHhhcc----cCcccCCC
Confidence 76 68999999999999999954 9999999998888755542 222 22222222222211 11334567
Q ss_pred HHHHHHHHHHCCCEEEEEeeeecceehhhhhhhc
Q 020710 287 EADVERALQKVGWKIRKRGLITTQFYFARLVEAV 320 (322)
Q Consensus 287 ~~~~~~~l~~aGf~vv~~~~~~~~~~f~~~~~~~ 320 (322)
.+++.++++++||++++.........|....+.+
T Consensus 148 ~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~ 181 (231)
T d1vl5a_ 148 KSDWLKMLEEAGFELEELHCFHKTFIFEDWCDRM 181 (231)
T ss_dssp HHHHHHHHHHHTCEEEEEEEEEEEEEHHHHHHHT
T ss_pred HHHHHHHHHHCCCEEEEEEEeecCCchHHHHHHh
Confidence 8999999999999999877666666666655443
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.91 E-value=2.3e-23 Score=178.57 Aligned_cols=160 Identities=14% Similarity=0.183 Sum_probs=125.1
Q ss_pred CCCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC---CCCccE
Q 020710 146 SLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL---DGKYDT 222 (322)
Q Consensus 146 ~~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~fD~ 222 (322)
..++.+|||||||+|.++..+++.+.+|+|||+|+.|++.|++++...+..+ +.|+++|++++ +++||+
T Consensus 14 ~~~~~rILDiGcGtG~~~~~la~~~~~v~gvD~S~~~l~~A~~~~~~~~~~~--------~~~~~~d~~~~~~~~~~fD~ 85 (234)
T d1xxla_ 14 CRAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGVEN--------VRFQQGTAESLPFPDDSFDI 85 (234)
T ss_dssp CCTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHHTCCS--------EEEEECBTTBCCSCTTCEEE
T ss_pred CCCCCEEEEeCCcCcHHHHHHHHhCCeEEEEeCChhhhhhhhhhhccccccc--------ccccccccccccccccccce
Confidence 3478999999999999999999999999999999999999999998876543 38999999876 789999
Q ss_pred EEEcccccccCcchHHHHHHHHHhccCCeEEEEEC-----CChhhHHHHHHhhccCCCCCCccccccCCHHHHHHHHHHC
Q 020710 223 VVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFA-----PKTFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQKV 297 (322)
Q Consensus 223 V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a 297 (322)
|+|..+++|++++ ..+++++++++++||++.+. .......+...+...+.. .+....+..++..+++++
T Consensus 86 v~~~~~l~~~~d~--~~~l~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 159 (234)
T d1xxla_ 86 ITCRYAAHHFSDV--RKAVREVARVLKQDGRFLLVDHYAPEDPVLDEFVNHLNRLRDP----SHVRESSLSEWQAMFSAN 159 (234)
T ss_dssp EEEESCGGGCSCH--HHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHHHHHCT----TCCCCCBHHHHHHHHHHT
T ss_pred eeeeceeecccCH--HHHHHHHHHeeCCCcEEEEEEcCCCCCHHHHHHHHHHHhhCCC----cccccCCHHHHHHHHHHC
Confidence 9999999999994 49999999998888765542 122223344443333321 223345788999999999
Q ss_pred CCEEEEEeeeecceehhhhhhh
Q 020710 298 GWKIRKRGLITTQFYFARLVEA 319 (322)
Q Consensus 298 Gf~vv~~~~~~~~~~f~~~~~~ 319 (322)
||.+...........|...++.
T Consensus 160 gf~~~~~~~~~~~~~~~~w~~~ 181 (234)
T d1xxla_ 160 QLAYQDIQKWNLPIQYDSWIKR 181 (234)
T ss_dssp TEEEEEEEEEEEEEEHHHHHHH
T ss_pred CCceeEEEEeeCccCHHHHHHH
Confidence 9998887777677777665543
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.88 E-value=2.4e-21 Score=170.53 Aligned_cols=155 Identities=16% Similarity=0.148 Sum_probs=118.9
Q ss_pred HHHHHHHhhhc-CCCCCCeEEEECCCcccchHHHHhc-CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEc
Q 020710 134 VENTMQMLNDE-GSLKGIAVCDAGCGTGSLAIPLAKQ-GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVK 211 (322)
Q Consensus 134 ~~~~~~~l~~~-~~~~~~~VLDvGcG~G~~~~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (322)
.+.+++.+... +..++.+|||||||+|.++..|+++ +++|+|||+|+.|++.|+++....++.+++ +|+++
T Consensus 52 ~~~~~~~l~~~~~l~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v-------~~~~~ 124 (282)
T d2o57a1 52 DEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNI-------TVKYG 124 (282)
T ss_dssp HHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTE-------EEEEC
T ss_pred HHHHHHHHHHhcCCCCCCEEEEeCCCCcHHHhhhhccCCcEEEEEeccchhhhhhhcccccccccccc-------ccccc
Confidence 34455555433 3457899999999999999999987 899999999999999999999988877655 99999
Q ss_pred ccccC---CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEECC----C----hhhHHHHHHhhccCCCCCCcc
Q 020710 212 DLESL---DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAP----K----TFYYDLLKRVGELFPGPSKAT 280 (322)
Q Consensus 212 d~~~~---~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~----~----~~~~~~~~~~~~~~~~~~~~~ 280 (322)
|+.++ +++||+|+|..+++|+++. ..+++++.+++++||.+.+.. . .....+.....
T Consensus 125 d~~~l~~~~~sfD~V~~~~~l~h~~d~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~---------- 192 (282)
T d2o57a1 125 SFLEIPCEDNSYDFIWSQDAFLHSPDK--LKVFQECARVLKPRGVMAITDPMKEDGIDKSSIQPILDRIK---------- 192 (282)
T ss_dssp CTTSCSSCTTCEEEEEEESCGGGCSCH--HHHHHHHHHHEEEEEEEEEEEEEECTTCCGGGGHHHHHHHT----------
T ss_pred ccccccccccccchhhccchhhhccCH--HHHHHHHHHhcCCCcEEEEEEeecCCCCchhHHHHHHHHhc----------
Confidence 99886 5899999999999999984 599999999988877655421 1 11111111111
Q ss_pred ccccCCHHHHHHHHHHCCCEEEEEeee
Q 020710 281 RAYLHAEADVERALQKVGWKIRKRGLI 307 (322)
Q Consensus 281 ~~~~~~~~~~~~~l~~aGf~vv~~~~~ 307 (322)
...+.+.+++.++++++||+.+.....
T Consensus 193 ~~~~~s~~~~~~~l~~~Gf~~i~~~d~ 219 (282)
T d2o57a1 193 LHDMGSLGLYRSLAKECGLVTLRTFSR 219 (282)
T ss_dssp CSSCCCHHHHHHHHHHTTEEEEEEEEC
T ss_pred cCCCCCHHHHHHHHHHcCCceEEEEEC
Confidence 112457889999999999998876544
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.87 E-value=8.1e-22 Score=167.24 Aligned_cols=136 Identities=24% Similarity=0.378 Sum_probs=109.0
Q ss_pred hHHHHHHHhcCCCcccchhhhhhcCchhHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHH
Q 020710 105 GFQRWKKIYGETDDVNRVQLDIRLGHSKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVA 184 (322)
Q Consensus 105 ~~~~w~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~ 184 (322)
+|++|.+.|..+++.+......+. ..+...+.+. ..++.+|||||||+|.++..+++.+.+|+|+|+|+.|++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~-l~~~~~ILDiGcG~G~~~~~la~~~~~v~giD~S~~~i~ 73 (226)
T d1ve3a1 1 GFKEYYRVFPTYTDINSQEYRSRI------ETLEPLLMKY-MKKRGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIR 73 (226)
T ss_dssp CCHHHHHHCSTTTCTTSHHHHHHH------HHHHHHHHHS-CCSCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHH
T ss_pred CHHHHHHHHHHHHHhhHHHHHHHH------HHHHHHHHHh-cCCCCEEEEECCCcchhhhhHhhhhcccccccccccchh
Confidence 367888888888777666554332 3333344332 235789999999999999999999999999999999999
Q ss_pred HHHHHhHHhhhccCCCCCCCCCceEEcccccC---CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEE
Q 020710 185 EARKKAEEELLADNGGEAPVMPKFEVKDLESL---DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSF 256 (322)
Q Consensus 185 ~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~ 256 (322)
.|+++....+... .++++|+.++ +++||+|+|..+++|+++.....+++++.+++++||.+.+
T Consensus 74 ~ak~~~~~~~~~~---------~~~~~d~~~l~~~~~~fD~I~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~lii 139 (226)
T d1ve3a1 74 KAREYAKSRESNV---------EFIVGDARKLSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIM 139 (226)
T ss_dssp HHHHHHHHTTCCC---------EEEECCTTSCCSCTTCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred hhhhhhccccccc---------cccccccccccccCcCceEEEEecchhhCChhHHHHHHHHHHHHcCcCcEEEE
Confidence 9999988766443 8889998876 6899999999999999876678999999999888775544
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.86 E-value=3.7e-21 Score=169.16 Aligned_cols=153 Identities=19% Similarity=0.288 Sum_probs=119.5
Q ss_pred hhcCCCCCCeEEEECCCcccchHHHHhc-CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccCCCCc
Q 020710 142 NDEGSLKGIAVCDAGCGTGSLAIPLAKQ-GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESLDGKY 220 (322)
Q Consensus 142 ~~~~~~~~~~VLDvGcG~G~~~~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~f 220 (322)
...+..++.+|||||||.|.++.++++. |++|+|+|+|+++++.++++..+.++.+++ .+...|....+++|
T Consensus 55 ~~l~l~~G~~VLDiGCG~G~~~~~~a~~~g~~v~git~s~~q~~~a~~~~~~~~l~~~v-------~~~~~d~~~~~~~f 127 (291)
T d1kpia_ 55 DKLNLEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRK-------EVRIQGWEEFDEPV 127 (291)
T ss_dssp HTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHSCCSSCE-------EEEECCGGGCCCCC
T ss_pred HhcCCCCCCEEEEecCcchHHHHHHHHhcCcceeeccchHHHHHHHHHHHHhhccchhh-------hhhhhccccccccc
Confidence 3334568999999999999999999876 999999999999999999999998887765 88888988789999
Q ss_pred cEEEEcccccccCcc-------hHHHHHHHHHhccCCeEEEEE----CCChhh------------HHHHHHhhc-cCCCC
Q 020710 221 DTVVCLDVLIHYPQS-------KADGMIAHLASLAEKRLILSF----APKTFY------------YDLLKRVGE-LFPGP 276 (322)
Q Consensus 221 D~V~~~~~l~~~~~~-------~~~~~l~~l~~~~~~~~il~~----~~~~~~------------~~~~~~~~~-~~~~~ 276 (322)
|.|++.++++|+++. ....+++++.+++++||.+.+ .+.... ......+.+ +|+
T Consensus 128 D~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i~~~~~~~~~~~~~~~p~~~~~~~~fi~kyiFp-- 205 (291)
T d1kpia_ 128 DRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIFP-- 205 (291)
T ss_dssp SEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTCT--
T ss_pred ceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEEeccCcchhhhccCCCchhhcccchHHHHHhcC--
Confidence 999999999999873 367999999999877775533 122111 111122222 333
Q ss_pred CCccccccCCHHHHHHHHHHCCCEEEEEeee
Q 020710 277 SKATRAYLHAEADVERALQKVGWKIRKRGLI 307 (322)
Q Consensus 277 ~~~~~~~~~~~~~~~~~l~~aGf~vv~~~~~ 307 (322)
...+.+..++..+++++||+++..+..
T Consensus 206 ----gg~lps~~~~~~~~e~~gl~v~~~~~~ 232 (291)
T d1kpia_ 206 ----GGRLPRISQVDYYSSNAGWKVERYHRI 232 (291)
T ss_dssp ----TCCCCCHHHHHHHHHHHTCEEEEEEEC
T ss_pred ----CCCCCCHHHHHhhhcccccccceeeec
Confidence 234668899999999999999887655
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.86 E-value=1.5e-21 Score=164.00 Aligned_cols=135 Identities=18% Similarity=0.162 Sum_probs=100.3
Q ss_pred CCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC---CCCccEEE
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL---DGKYDTVV 224 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~fD~V~ 224 (322)
++.+|||||||+|.++..+. +++|||+|+.|++.++++ + +.+.++|++++ +++||+|+
T Consensus 36 ~~~~vLDiGcG~G~~~~~~~----~~~giD~s~~~~~~a~~~----~-----------~~~~~~d~~~l~~~~~~fD~I~ 96 (208)
T d1vlma_ 36 PEGRGVEIGVGTGRFAVPLK----IKIGVEPSERMAEIARKR----G-----------VFVLKGTAENLPLKDESFDFAL 96 (208)
T ss_dssp CSSCEEEETCTTSTTHHHHT----CCEEEESCHHHHHHHHHT----T-----------CEEEECBTTBCCSCTTCEEEEE
T ss_pred CCCeEEEECCCCcccccccc----eEEEEeCChhhccccccc----c-----------cccccccccccccccccccccc
Confidence 45689999999999988874 468999999999999864 1 28999999876 68999999
Q ss_pred EcccccccCcchHHHHHHHHHhccCCeEEEEEC-C--ChhhHHHHHHhhccCCCCCCccccccCCHHHHHHHHHHCCCEE
Q 020710 225 CLDVLIHYPQSKADGMIAHLASLAEKRLILSFA-P--KTFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQKVGWKI 301 (322)
Q Consensus 225 ~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v 301 (322)
|..+|+|+++ ...+++++++++++||.+.+. + ..+....... .........+..+++.+++.++|+++||++
T Consensus 97 ~~~~l~h~~d--~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~s~~~l~~~l~~~Gf~~ 171 (208)
T d1vlma_ 97 MVTTICFVDD--PERALKEAYRILKKGGYLIVGIVDRESFLGREYEK---NKEKSVFYKNARFFSTEELMDLMRKAGFEE 171 (208)
T ss_dssp EESCGGGSSC--HHHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHH---TTTC-CCSTTCCCCCHHHHHHHHHHTTCEE
T ss_pred cccccccccc--cccchhhhhhcCCCCceEEEEecCCcchhHHhhhh---ccccccccccccCCCHHHHHHHHHHcCCeE
Confidence 9999999998 459999999988777655432 2 2222222221 111111223445679999999999999998
Q ss_pred EEEee
Q 020710 302 RKRGL 306 (322)
Q Consensus 302 v~~~~ 306 (322)
+++..
T Consensus 172 i~v~~ 176 (208)
T d1vlma_ 172 FKVVQ 176 (208)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 87544
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=4.3e-22 Score=169.25 Aligned_cols=144 Identities=15% Similarity=0.123 Sum_probs=111.7
Q ss_pred CCCCeEEEECCCcccchHHHHhc-CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC---CCCccE
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQ-GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL---DGKYDT 222 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~fD~ 222 (322)
.++.+|||||||+|.++..++.. +.+|+|||+|+.|++.|++++...+..+ ++|+++|++++ +++||+
T Consensus 59 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~ak~~~~~~~~~~--------~~f~~~d~~~~~~~~~~fD~ 130 (222)
T d2ex4a1 59 TGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRV--------RNYFCCGLQDFTPEPDSYDV 130 (222)
T ss_dssp CCCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGE--------EEEEECCGGGCCCCSSCEEE
T ss_pred CCCCEEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHhhccccccccccccc--------cccccccccccccccccccc
Confidence 35679999999999999998766 5689999999999999999988766543 38999999876 689999
Q ss_pred EEEcccccccCcchHHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCCCCCccccccCCHHHHHHHHHHCCCEEE
Q 020710 223 VVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQKVGWKIR 302 (322)
Q Consensus 223 V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~vv 302 (322)
|++..+++|+++++...++++++++++++|.+.+...... ....+. ...+.+.++.+++.++++++||+++
T Consensus 131 I~~~~~l~h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~~~~------~~~~~~---~~~~~~~~~~~~~~~l~~~aGf~ii 201 (222)
T d2ex4a1 131 IWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQ------EGVILD---DVDSSVCRDLDVVRRIICSAGLSLL 201 (222)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBS------SSEEEE---TTTTEEEEBHHHHHHHHHHTTCCEE
T ss_pred cccccccccchhhhhhhHHHHHHHhcCCcceEEEEEcccc------cccccc---cCCceeeCCHHHHHHHHHHcCCEEE
Confidence 9999999999988778999999999887776655321110 001110 1112234588999999999999999
Q ss_pred EEeee
Q 020710 303 KRGLI 307 (322)
Q Consensus 303 ~~~~~ 307 (322)
+.+..
T Consensus 202 ~~~~q 206 (222)
T d2ex4a1 202 AEERQ 206 (222)
T ss_dssp EEEEC
T ss_pred EEEEe
Confidence 87654
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.85 E-value=1.3e-21 Score=168.80 Aligned_cols=161 Identities=17% Similarity=0.211 Sum_probs=120.6
Q ss_pred HHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc-CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEc
Q 020710 133 TVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ-GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVK 211 (322)
Q Consensus 133 ~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (322)
.+..+.+.+.. .++.+|||||||+|..+..+++. +++|+|||+|+.|++.|+++....++.+++ +|+++
T Consensus 21 ~~~~l~~~~~l---~pg~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v-------~~~~~ 90 (245)
T d1nkva_ 21 KYATLGRVLRM---KPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERV-------HFIHN 90 (245)
T ss_dssp HHHHHHHHTCC---CTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTE-------EEEES
T ss_pred HHHHHHHHcCC---CCCCEEEEEcCCCCHHHHHHHHhcCCEEEEEecccchhhHHHHHHHHhhccccc-------hhhhh
Confidence 34555555544 47899999999999999999876 889999999999999999999998887665 99999
Q ss_pred ccccC--CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEECCChhhH-HHHHHhhccCCCCCCccccccCCHH
Q 020710 212 DLESL--DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYY-DLLKRVGELFPGPSKATRAYLHAEA 288 (322)
Q Consensus 212 d~~~~--~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (322)
|+.++ +++||+|+|..+++|+++.. .+++++++++++||.+.+....+.. .....+...+.. .....+.+..
T Consensus 91 d~~~~~~~~~fD~v~~~~~~~~~~d~~--~~l~~~~r~LkPGG~l~i~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 165 (245)
T d1nkva_ 91 DAAGYVANEKCDVAACVGATWIAGGFA--GAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQACGV---SSTSDFLTLP 165 (245)
T ss_dssp CCTTCCCSSCEEEEEEESCGGGTSSSH--HHHHHHTTSEEEEEEEEEEEEEETTCCSSHHHHHTTTC---SCGGGSCCHH
T ss_pred HHhhccccCceeEEEEEehhhccCCHH--HHHHHHHHHcCcCcEEEEEeccccCCCChHHHHHHhcc---CCCcccCCHH
Confidence 99876 78999999999999999854 9999999998888766553211000 001112222221 1122245788
Q ss_pred HHHHHHHHCCCEEEEEeeee
Q 020710 289 DVERALQKVGWKIRKRGLIT 308 (322)
Q Consensus 289 ~~~~~l~~aGf~vv~~~~~~ 308 (322)
++..+++++||+++......
T Consensus 166 ~~~~~~~~aG~~~v~~~~~~ 185 (245)
T d1nkva_ 166 GLVGAFDDLGYDVVEMVLAD 185 (245)
T ss_dssp HHHHHHHTTTBCCCEEEECC
T ss_pred HHHHHHHHcCCEEEEEEeCC
Confidence 99999999999988755443
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.85 E-value=7.7e-21 Score=166.67 Aligned_cols=154 Identities=16% Similarity=0.273 Sum_probs=120.4
Q ss_pred hhcCCCCCCeEEEECCCcccchHHHHhc-CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccCCCCc
Q 020710 142 NDEGSLKGIAVCDAGCGTGSLAIPLAKQ-GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESLDGKY 220 (322)
Q Consensus 142 ~~~~~~~~~~VLDvGcG~G~~~~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~f 220 (322)
...+..++.+|||||||.|.++.++++. |++|+||++|+.+++.|+++..+.+..+++ ++..+|..+++++|
T Consensus 56 ~~l~l~~G~~VLDiGCG~G~~a~~~a~~~g~~v~git~s~~Q~~~a~~~~~~~g~~~~v-------~~~~~d~~~~~~~f 128 (285)
T d1kpga_ 56 GKLGLQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSK-------RVLLAGWEQFDEPV 128 (285)
T ss_dssp TTTTCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCE-------EEEESCGGGCCCCC
T ss_pred HHcCCCCCCEEEEecCcchHHHHHHHhcCCcceEEEeccHHHHHHHHHHHHhhhhhhhh-------HHHHhhhhcccccc
Confidence 3344568999999999999999998887 999999999999999999999988877665 89999999889999
Q ss_pred cEEEEcccccccCcchHHHHHHHHHhccCCeEEEEE---C-CCh------------hhHHHHHHhhc-cCCCCCCccccc
Q 020710 221 DTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSF---A-PKT------------FYYDLLKRVGE-LFPGPSKATRAY 283 (322)
Q Consensus 221 D~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~---~-~~~------------~~~~~~~~~~~-~~~~~~~~~~~~ 283 (322)
|.|++.++++|+..+....+++++.+++++||.+.+ . ... ........+.+ +|++ +.
T Consensus 129 D~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~fi~kyiFpg------g~ 202 (285)
T d1kpga_ 129 DRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPG------GR 202 (285)
T ss_dssp SEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTT------CC
T ss_pred cceeeehhhhhcCchhHHHHHHHHHhhcCCCCcEEEEEEeccCchhhccccCCcchhhhchhhHHHHHhccC------CC
Confidence 999999999999877678999999998877664432 1 111 01111122322 3332 33
Q ss_pred cCCHHHHHHHHHHCCCEEEEEeeee
Q 020710 284 LHAEADVERALQKVGWKIRKRGLIT 308 (322)
Q Consensus 284 ~~~~~~~~~~l~~aGf~vv~~~~~~ 308 (322)
+.+..++.++++++||++++.+...
T Consensus 203 lPsl~~~~~~~e~agf~v~~~~~~~ 227 (285)
T d1kpga_ 203 LPSIPMVQECASANGFTVTRVQSLQ 227 (285)
T ss_dssp CCCHHHHHHHHHTTTCEEEEEEECH
T ss_pred CCChhhHHHHHHHhchhhcccccch
Confidence 5678999999999999998876553
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.85 E-value=8.6e-21 Score=163.52 Aligned_cols=113 Identities=20% Similarity=0.274 Sum_probs=93.3
Q ss_pred HHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEccc
Q 020710 134 VENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDL 213 (322)
Q Consensus 134 ~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~ 213 (322)
+..+++.+... ..++.+|||||||+|.++..++++|.+|+|||+|+.|++.|+++....+... +|+++|+
T Consensus 24 ~~~~~~~~~~~-~~~~~~vLDiGCG~G~~~~~l~~~g~~v~GvD~S~~ml~~A~~~~~~~~~~v---------~~~~~d~ 93 (246)
T d1y8ca_ 24 SDFIIEKCVEN-NLVFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGLKP---------RLACQDI 93 (246)
T ss_dssp HHHHHHHHHTT-TCCTTEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHHHHHHHTTCCC---------EEECCCG
T ss_pred HHHHHHHHHHh-CCCCCeEEEEeCcCCHHHHHHHHhCCccEeeccchhhhhhccccccccCccc---------eeeccch
Confidence 35566666654 2346799999999999999999999999999999999999999988766543 8999999
Q ss_pred ccC--CCCccEEEEc-ccccccCc-chHHHHHHHHHhccCCeEEEEE
Q 020710 214 ESL--DGKYDTVVCL-DVLIHYPQ-SKADGMIAHLASLAEKRLILSF 256 (322)
Q Consensus 214 ~~~--~~~fD~V~~~-~~l~~~~~-~~~~~~l~~l~~~~~~~~il~~ 256 (322)
.++ +++||+|+|. .+++|++. +.+..+++++++.+++||++.+
T Consensus 94 ~~~~~~~~fD~i~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~ 140 (246)
T d1y8ca_ 94 SNLNINRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIF 140 (246)
T ss_dssp GGCCCSCCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred hhhcccccccccceeeeeeeccCCHHHHHHHHHHHHHhCCCCeEEEE
Confidence 876 6899999986 67888864 3467899999999888876654
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.85 E-value=1.4e-20 Score=160.15 Aligned_cols=166 Identities=12% Similarity=0.091 Sum_probs=115.6
Q ss_pred HHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc----CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEE
Q 020710 135 ENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ----GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEV 210 (322)
Q Consensus 135 ~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~----~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~ 210 (322)
+.+..++... ..++.+|||||||+|..+..+++. +++|+|+|+|+.|++.|+++........++ .+..
T Consensus 27 ~~i~~~~~~~-~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~-------~~~~ 98 (225)
T d1im8a_ 27 TAIGMLAERF-VTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPV-------EILC 98 (225)
T ss_dssp HHHHHHHHHH-CCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCE-------EEEC
T ss_pred HHHHHHHHHh-cCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchh-------hhcc
Confidence 3344444432 346789999999999999999874 789999999999999999998876655433 6777
Q ss_pred cccccC-CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEECC----Ch-hhH----HHHHHhhc--cCCCCC-
Q 020710 211 KDLESL-DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAP----KT-FYY----DLLKRVGE--LFPGPS- 277 (322)
Q Consensus 211 ~d~~~~-~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~----~~-~~~----~~~~~~~~--~~~~~~- 277 (322)
.|+.+. ...+|+|+|..++||++.+....+++++++.+++||++.+.. .. ... .+...... -+....
T Consensus 99 ~d~~~~~~~~~d~i~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (225)
T d1im8a_ 99 NDIRHVEIKNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHLLIDLHHQFKRANGYSELEV 178 (225)
T ss_dssp SCTTTCCCCSEEEEEEESCGGGSCGGGHHHHHHHHHHHEEEEEEEEEEEECCCSSHHHHHHHHHHHHHHHHHTTGGGSTT
T ss_pred chhhccccccceeeEEeeeccccChhhHHHHHHHHHHhCCCCceeecccccccccchhhhHHHHHHHHHHHHcCCCHHHH
Confidence 887766 578999999999999987778899999999988888665531 11 111 11111000 000000
Q ss_pred C------ccccccCCHHHHHHHHHHCCCEEEEEeeee
Q 020710 278 K------ATRAYLHAEADVERALQKVGWKIRKRGLIT 308 (322)
Q Consensus 278 ~------~~~~~~~~~~~~~~~l~~aGf~vv~~~~~~ 308 (322)
. ....+..+.+++.++|+++||+.++.....
T Consensus 179 ~~~~~~~~~~~~~~s~~~~~~~L~~aGF~~v~~~~~~ 215 (225)
T d1im8a_ 179 SQKRTALENVMRTDSIETHKVRLKNVGFSQVELWFQC 215 (225)
T ss_dssp HHHHHHHHHHCCCCCHHHHHHHHHHHTCSEEEEEEEE
T ss_pred HHHHHHhhcccCCCCHHHHHHHHHHcCCCceEEeeee
Confidence 0 000123588999999999999988865443
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.85 E-value=9.8e-21 Score=161.10 Aligned_cols=146 Identities=14% Similarity=0.171 Sum_probs=107.2
Q ss_pred CCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--CCCccEEEE
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL--DGKYDTVVC 225 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~fD~V~~ 225 (322)
++.+|||||||+|.++..+++.|.+|+|||+|+.|++.|+++.... +.+..+|+++. +++||+|+|
T Consensus 20 ~~~~VLDiGcG~G~~~~~l~~~g~~v~giD~s~~~i~~a~~~~~~~------------~~~~~~~~~~~~~~~~fD~I~~ 87 (225)
T d2p7ia1 20 RPGNLLELGSFKGDFTSRLQEHFNDITCVEASEEAISHAQGRLKDG------------ITYIHSRFEDAQLPRRYDNIVL 87 (225)
T ss_dssp CSSCEEEESCTTSHHHHHHTTTCSCEEEEESCHHHHHHHHHHSCSC------------EEEEESCGGGCCCSSCEEEEEE
T ss_pred CCCcEEEEeCCCcHHHHHHHHcCCeEEEEeCcHHHhhhhhcccccc------------cccccccccccccccccccccc
Confidence 5778999999999999999999999999999999999998775421 28889988775 789999999
Q ss_pred cccccccCcchHHHHHHHHH-hccCCeEEEEE-CCChhhH-HHHHHhhccCCCCC-------CccccccCCHHHHHHHHH
Q 020710 226 LDVLIHYPQSKADGMIAHLA-SLAEKRLILSF-APKTFYY-DLLKRVGELFPGPS-------KATRAYLHAEADVERALQ 295 (322)
Q Consensus 226 ~~~l~~~~~~~~~~~l~~l~-~~~~~~~il~~-~~~~~~~-~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~l~ 295 (322)
.++|+|++++. .++++++ +++++||++.+ .|+.... .............. ...|...++.+++++++.
T Consensus 88 ~~vleh~~d~~--~~l~~i~~~~Lk~gG~l~i~~pn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~l~ 165 (225)
T d2p7ia1 88 THVLEHIDDPV--ALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDAS 165 (225)
T ss_dssp ESCGGGCSSHH--HHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHH
T ss_pred cceeEecCCHH--HHHHHHHHHhcCCCceEEEEeCCcccHHHHHHHHhhhhhhhhhcCccccceeeeeccCHHHHHHHHH
Confidence 99999999965 8999997 67766665443 3332211 11111111111111 112344568999999999
Q ss_pred HCCCEEEEEeee
Q 020710 296 KVGWKIRKRGLI 307 (322)
Q Consensus 296 ~aGf~vv~~~~~ 307 (322)
++||+++..+.+
T Consensus 166 ~~Gf~i~~~~~~ 177 (225)
T d2p7ia1 166 RAGLQVTYRSGI 177 (225)
T ss_dssp HTTCEEEEEEEE
T ss_pred HCCCEEEEEEEE
Confidence 999999986644
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.84 E-value=3.2e-20 Score=154.69 Aligned_cols=138 Identities=23% Similarity=0.310 Sum_probs=104.5
Q ss_pred CCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--CCCccEEEE
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL--DGKYDTVVC 225 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~fD~V~~ 225 (322)
++++|||||||+|.++..++++|++|+|+|+|+.|++.++++....++.+ +.+...|+... +++||+|+|
T Consensus 30 ~~grvLDiGcG~G~~~~~la~~g~~v~gvD~s~~~l~~a~~~~~~~~~~~--------~~~~~~d~~~~~~~~~fD~I~~ 101 (198)
T d2i6ga1 30 APGRTLDLGCGNGRNSLYLAANGYDVTAWDKNPASMANLERIKAAEGLDN--------LQTDLVDLNTLTFDGEYDFILS 101 (198)
T ss_dssp CSCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCTT--------EEEEECCTTTCCCCCCEEEEEE
T ss_pred CCCcEEEECCCCCHHHHHHHHHhhhhccccCcHHHHHHHHHHhhhccccc--------hhhhheecccccccccccEEEE
Confidence 46799999999999999999999999999999999999999988776543 37888998765 799999999
Q ss_pred cccccccCcchHHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCCCCCccccccCCHHHHHHHHHHCCCEEEEEe
Q 020710 226 LDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQKVGWKIRKRG 305 (322)
Q Consensus 226 ~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~vv~~~ 305 (322)
..+++|++++...++++++.++++++|++.+.......+.... ....+.++..++.+++ +||+++...
T Consensus 102 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~----------~~~~~~~~~~el~~~~--~~~~i~~~~ 169 (198)
T d2i6ga1 102 TVVMMFLEAQTIPGLIANMQRCTKPGGYNLIVAAMDTPDFPCT----------VGFPFAFKEGELRRYY--EGWDMLKYN 169 (198)
T ss_dssp ESCGGGSCTTHHHHHHHHHHHTEEEEEEEEEEEEBC-------------------CCCCBCTTHHHHHT--TTSEEEEEE
T ss_pred eeeeecCCHHHHHHHHHHHHHHcCCCcEEEEEEecCCccCCCC----------CCCCCccCHHHHHHHh--CCCeEEEee
Confidence 9999999988888999999998877776554321111111111 1112234556787777 589887633
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.83 E-value=2.3e-20 Score=163.55 Aligned_cols=158 Identities=13% Similarity=0.181 Sum_probs=121.4
Q ss_pred HHHHhhhcCCCCCCeEEEECCCcccchHHHHhc-CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEccccc
Q 020710 137 TMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ-GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLES 215 (322)
Q Consensus 137 ~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 215 (322)
+-.++...+..++.+|||||||+|.++..+++. |++|+|||+|+++++.|+++..+.++..++ .+...|..+
T Consensus 41 ~~~~~~~l~l~~g~~VLDiGCG~G~~a~~~a~~~g~~v~gi~ls~~q~~~a~~~~~~~~l~~~~-------~~~~~d~~~ 113 (280)
T d2fk8a1 41 VDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSR-------QVLLQGWED 113 (280)
T ss_dssp HHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCE-------EEEESCGGG
T ss_pred HHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhCceeEEEecchHHHHHHHHHHHHhhccccch-------hhhhhhhhh
Confidence 333444444568999999999999999999887 999999999999999999999988876544 778888888
Q ss_pred CCCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEEC----CChhh------------HHHHHHhhc-cCCCCCC
Q 020710 216 LDGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFA----PKTFY------------YDLLKRVGE-LFPGPSK 278 (322)
Q Consensus 216 ~~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~----~~~~~------------~~~~~~~~~-~~~~~~~ 278 (322)
++++||.|++.++++|++++.+..+++++++++++||.+.+. ..... ......+.+ +++
T Consensus 114 ~~~~fD~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~dfI~kyifP---- 189 (280)
T d2fk8a1 114 FAEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFP---- 189 (280)
T ss_dssp CCCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTST----
T ss_pred hccchhhhhHhhHHHHhhhhhHHHHHHHHHhccCCCceEEEEEeeccCcchhhhcccccccccccccchhhhhccC----
Confidence 899999999999999999877889999999988777655431 11110 011122222 233
Q ss_pred ccccccCCHHHHHHHHHHCCCEEEEEeee
Q 020710 279 ATRAYLHAEADVERALQKVGWKIRKRGLI 307 (322)
Q Consensus 279 ~~~~~~~~~~~~~~~l~~aGf~vv~~~~~ 307 (322)
..++.+.+++.++++++||++++.+..
T Consensus 190 --gg~lPS~~~l~~~~e~aGf~v~~~~~~ 216 (280)
T d2fk8a1 190 --GGRLPSTEMMVEHGEKAGFTVPEPLSL 216 (280)
T ss_dssp --TCCCCCHHHHHHHHHHTTCBCCCCEEC
T ss_pred --CCcccchHhhhhhHHhhccccceeeec
Confidence 334668899999999999999876654
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.83 E-value=1.8e-21 Score=168.69 Aligned_cols=143 Identities=16% Similarity=0.158 Sum_probs=108.7
Q ss_pred CCCCeEEEECCCcccchHHHHhc-CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC---CCCccE
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQ-GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL---DGKYDT 222 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~fD~ 222 (322)
.+..+|||+|||+|+++..|+.. +.+|++||+|+.|++.|++++..... ++|+++|+.++ +++||+
T Consensus 92 ~~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~~~~~----------~~~~~~d~~~~~~~~~~fD~ 161 (254)
T d1xtpa_ 92 HGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGMPV----------GKFILASMETATLPPNTYDL 161 (254)
T ss_dssp CCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTSSE----------EEEEESCGGGCCCCSSCEEE
T ss_pred CCCCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHHHhhhcccccccc----------ceeEEccccccccCCCccce
Confidence 46789999999999999998866 56799999999999999988754322 28999998876 688999
Q ss_pred EEEcccccccCcchHHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCCCCCccccccCCHHHHHHHHHHCCCEEE
Q 020710 223 VVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQKVGWKIR 302 (322)
Q Consensus 223 V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~vv 302 (322)
|+|..+++|++++++..+++++++.+++++++.+....... ....+. .......++.++++++++++||+++
T Consensus 162 I~~~~vl~hl~d~d~~~~l~~~~~~LkpgG~iii~e~~~~~-----~~~~~d---~~d~~~~rs~~~~~~l~~~aGf~ii 233 (254)
T d1xtpa_ 162 IVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTG-----DRFLVD---KEDSSLTRSDIHYKRLFNESGVRVV 233 (254)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC-------CCEEEE---TTTTEEEBCHHHHHHHHHHHTCCEE
T ss_pred EEeeccccccchhhhHHHHHHHHHhcCCCcEEEEEecCCCC-----Ccceec---ccCCceeCCHHHHHHHHHHcCCEEE
Confidence 99999999999988889999999988777766553211100 000111 1112224588999999999999999
Q ss_pred EEeee
Q 020710 303 KRGLI 307 (322)
Q Consensus 303 ~~~~~ 307 (322)
+.+..
T Consensus 234 ~~~~q 238 (254)
T d1xtpa_ 234 KEAFQ 238 (254)
T ss_dssp EEEEC
T ss_pred EEEee
Confidence 86543
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.80 E-value=1.2e-19 Score=150.43 Aligned_cols=149 Identities=17% Similarity=0.134 Sum_probs=108.2
Q ss_pred CCCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCC----CCCCCCCceEEcccccC----C
Q 020710 146 SLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNG----GEAPVMPKFEVKDLESL----D 217 (322)
Q Consensus 146 ~~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~----~~~~~~~~~~~~d~~~~----~ 217 (322)
..++.+|||+|||+|+++.+|+++|++|+|+|+|+.|++.|+++.......... ......+.|.++|+.++ .
T Consensus 18 ~~~~~rvLd~GCG~G~~a~~la~~G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~ 97 (201)
T d1pjza_ 18 VVPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARDI 97 (201)
T ss_dssp CCTTCEEEETTTCCSHHHHHHHHHCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHHH
T ss_pred CCCCCEEEEecCcCCHHHHHHHHcCCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecccccccccccc
Confidence 457899999999999999999999999999999999999999988654321100 00012237888898876 4
Q ss_pred CCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCCCCCccccccCCHHHHHHHHHHC
Q 020710 218 GKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQKV 297 (322)
Q Consensus 218 ~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a 297 (322)
..||+|++..+++|++++....+++++.+.+++||.+.+..... ... ......+..+.+++++++ ..
T Consensus 98 ~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~~~~-----------~~~-~~~~p~~~~~~~el~~l~-~~ 164 (201)
T d1pjza_ 98 GHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEY-----------DQA-LLEGPPFSVPQTWLHRVM-SG 164 (201)
T ss_dssp HSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESS-----------CSS-SSSSCCCCCCHHHHHHTS-CS
T ss_pred cceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEEccc-----------ccc-cCCCccccCCHHHHHHHh-CC
Confidence 78999999999999998778899999999988887654421111 000 111123455788888877 46
Q ss_pred CCEEEEEeee
Q 020710 298 GWKIRKRGLI 307 (322)
Q Consensus 298 Gf~vv~~~~~ 307 (322)
+|++...+..
T Consensus 165 ~~~i~~~~~~ 174 (201)
T d1pjza_ 165 NWEVTKVGGQ 174 (201)
T ss_dssp SEEEEEEEES
T ss_pred CcEEEEEEEe
Confidence 7887655444
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.80 E-value=3.9e-19 Score=151.42 Aligned_cols=155 Identities=16% Similarity=0.131 Sum_probs=110.2
Q ss_pred HHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCC---------CCCCCC
Q 020710 135 ENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNG---------GEAPVM 205 (322)
Q Consensus 135 ~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~---------~~~~~~ 205 (322)
+.+.+.+.. .++.+|||+|||+|.++.+|+++|++|+|||+|+.+|+.++++.......... ...-..
T Consensus 35 ~~~~~~l~~---~~~~rvLd~GCG~G~~a~~LA~~G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (229)
T d2bzga1 35 KHLDTFLKG---KSGLRVFFPLCGKAVEMKWFADRGHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGN 111 (229)
T ss_dssp HHHHHHHTT---CCSCEEEETTCTTCTHHHHHHHTTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSS
T ss_pred HHHHHhcCC---CCCCEEEEeCCCCcHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCc
Confidence 344444443 36789999999999999999999999999999999999999887543211000 001123
Q ss_pred CceEEcccccC----CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCCCCCccc
Q 020710 206 PKFEVKDLESL----DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATR 281 (322)
Q Consensus 206 ~~~~~~d~~~~----~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (322)
++|.++|+.++ .+.||+|+...+++|++.+....+++++.+++++||.+.+...... .......
T Consensus 112 v~~~~~d~~~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~~~~~------------~~~~~gp 179 (229)
T d2bzga1 112 ISLYCCSIFDLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVLSYD------------PTKHPGP 179 (229)
T ss_dssp EEEEESCGGGGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECC------------TTTCCCS
T ss_pred EEEEEcchhhccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEEcccC------------CCCCCCC
Confidence 48899998765 6899999999999999988889999999999888775433211100 0001112
Q ss_pred cccCCHHHHHHHHHHCCCEEEEEe
Q 020710 282 AYLHAEADVERALQKVGWKIRKRG 305 (322)
Q Consensus 282 ~~~~~~~~~~~~l~~aGf~vv~~~ 305 (322)
.+..+.+++.+++.. +|++...+
T Consensus 180 p~~~~~~el~~lf~~-~~~i~~le 202 (229)
T d2bzga1 180 PFYVPHAEIERLFGK-ICNIRCLE 202 (229)
T ss_dssp SCCCCHHHHHHHHTT-TEEEEEEE
T ss_pred CCCCCHHHHHHHhcC-CCEEEEEE
Confidence 245689999999954 78775543
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.80 E-value=1.2e-19 Score=155.60 Aligned_cols=94 Identities=27% Similarity=0.323 Sum_probs=80.7
Q ss_pred CCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC---CCCccEEE
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL---DGKYDTVV 224 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~fD~V~ 224 (322)
++.+|||+|||+|.++..|++.|++|+|+|+|+.|++.|+++... .++++|++++ +++||+|+
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~--------------~~~~~~~~~l~~~~~~fD~ii 107 (246)
T d2avna1 42 NPCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKEMLEVAREKGVK--------------NVVEAKAEDLPFPSGAFEAVL 107 (246)
T ss_dssp SCCEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHHTCS--------------CEEECCTTSCCSCTTCEEEEE
T ss_pred CCCEEEEECCCCchhcccccccceEEEEeeccccccccccccccc--------------cccccccccccccccccccee
Confidence 467999999999999999999999999999999999999876422 5778888776 68999999
Q ss_pred Ec-ccccccCcchHHHHHHHHHhccCCeEEEEEC
Q 020710 225 CL-DVLIHYPQSKADGMIAHLASLAEKRLILSFA 257 (322)
Q Consensus 225 ~~-~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~ 257 (322)
|. .++||++++ ..+++++.+++++||++.+.
T Consensus 108 ~~~~~~~~~~d~--~~~l~~i~r~Lk~gG~~ii~ 139 (246)
T d2avna1 108 ALGDVLSYVENK--DKAFSEIRRVLVPDGLLIAT 139 (246)
T ss_dssp ECSSHHHHCSCH--HHHHHHHHHHEEEEEEEEEE
T ss_pred eecchhhhhhhH--HHHHHHHHhhcCcCcEEEEE
Confidence 86 689999995 48999999998888776653
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.80 E-value=3.6e-19 Score=153.93 Aligned_cols=159 Identities=16% Similarity=0.176 Sum_probs=115.7
Q ss_pred HHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcc
Q 020710 135 ENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKD 212 (322)
Q Consensus 135 ~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d 212 (322)
+.+++.+.. .+..+|||||||+|.++..++++ +.+++++|+ +.+++.++++....+..+++ +++.+|
T Consensus 70 ~~~~~~~d~---~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~rv-------~~~~~D 138 (253)
T d1tw3a2 70 DAPAAAYDW---TNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRV-------DVVEGD 138 (253)
T ss_dssp HHHHHHSCC---TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTE-------EEEECC
T ss_pred HHHHhhcCC---ccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhhcccch-------hhcccc
Confidence 455555543 35689999999999999999988 678999998 67999999999988877655 999999
Q ss_pred cccC-CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEE-CC---C-hhhHHHHHHh-hccCCCCCCccccccC
Q 020710 213 LESL-DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSF-AP---K-TFYYDLLKRV-GELFPGPSKATRAYLH 285 (322)
Q Consensus 213 ~~~~-~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~-~~---~-~~~~~~~~~~-~~~~~~~~~~~~~~~~ 285 (322)
+.+. +.+||+|++..+|||+++++...+|+++++.+++||.+.+ .. . .......... ...+. ...+..+
T Consensus 139 ~~~~~~~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkPGG~l~i~e~~~~~~~~~~~~~~~~dl~~~~----~~~g~~r 214 (253)
T d1tw3a2 139 FFEPLPRKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLV----FLGGALR 214 (253)
T ss_dssp TTSCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHH----HHSCCCC
T ss_pred chhhcccchhheeeccccccCCchhhHHHHHHHHHhcCCCcEEEEEeccCCCCCcchhHHHHhhHHHHh----hCCCcCC
Confidence 8654 6789999999999999998788999999998877664433 21 1 1111111100 00000 0112235
Q ss_pred CHHHHHHHHHHCCCEEEEEeeee
Q 020710 286 AEADVERALQKVGWKIRKRGLIT 308 (322)
Q Consensus 286 ~~~~~~~~l~~aGf~vv~~~~~~ 308 (322)
+.++++++++++||+++++....
T Consensus 215 t~~e~~~ll~~AGf~~~~v~~~~ 237 (253)
T d1tw3a2 215 TREKWDGLAASAGLVVEEVRQLP 237 (253)
T ss_dssp BHHHHHHHHHHTTEEEEEEEEEE
T ss_pred CHHHHHHHHHHCCCeEEEEEECC
Confidence 78999999999999998866543
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.79 E-value=1.4e-19 Score=155.99 Aligned_cols=112 Identities=21% Similarity=0.330 Sum_probs=93.2
Q ss_pred HHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEccccc
Q 020710 136 NTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLES 215 (322)
Q Consensus 136 ~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 215 (322)
.+..++......+..+|||||||+|..+..|+++|++|+|||+|+.|++.|++++...+... +|.++|+++
T Consensus 29 ~~~~~~~~~~~~~~~~iLDiGcGtG~~~~~l~~~~~~v~gvD~s~~mi~~a~~~~~~~~~~i---------~~~~~d~~~ 99 (251)
T d1wzna1 29 FVEEIFKEDAKREVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKERNLKI---------EFLQGDVLE 99 (251)
T ss_dssp HHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCC---------EEEESCGGG
T ss_pred HHHHHHHHhcCCCCCEEEEeCCCCCccchhhcccceEEEEEeeccccccccccccccccccc---------hheehhhhh
Confidence 34444544444467799999999999999999999999999999999999999988765533 999999988
Q ss_pred C--CCCccEEEEc-ccccccCcchHHHHHHHHHhccCCeEEEEE
Q 020710 216 L--DGKYDTVVCL-DVLIHYPQSKADGMIAHLASLAEKRLILSF 256 (322)
Q Consensus 216 ~--~~~fD~V~~~-~~l~~~~~~~~~~~l~~l~~~~~~~~il~~ 256 (322)
+ +++||+|+|. .+++|+..++...+|+++++++++||++.+
T Consensus 100 l~~~~~fD~I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii 143 (251)
T d1wzna1 100 IAFKNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFIT 143 (251)
T ss_dssp CCCCSCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred cccccccchHhhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEEE
Confidence 6 6789999997 578888766678999999999888886655
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.77 E-value=6.1e-19 Score=152.38 Aligned_cols=152 Identities=16% Similarity=0.189 Sum_probs=107.5
Q ss_pred CCCCeEEEECCCcccchHHHHhcCC-EEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC----CCCcc
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQGA-IVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL----DGKYD 221 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~~fD 221 (322)
.++.+|||||||+|..+..+++.+. +|+|||+|+.|++.|+++....+...++ .|.++|+... .++||
T Consensus 23 ~~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v-------~f~~~D~~~~~~~~~~~fD 95 (252)
T d1ri5a_ 23 KRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKV-------FFRAQDSYGRHMDLGKEFD 95 (252)
T ss_dssp CTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEE-------EEEESCTTTSCCCCSSCEE
T ss_pred CCcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcCCCcce-------EEEEcchhhhcccccccce
Confidence 3578999999999999999998864 7999999999999999998776544323 8999998543 56899
Q ss_pred EEEEcccccccCc--chHHHHHHHHHhccCCeEEEEEC-CCh-hhHHHHHH--hhcc-----C----CCC----------
Q 020710 222 TVVCLDVLIHYPQ--SKADGMIAHLASLAEKRLILSFA-PKT-FYYDLLKR--VGEL-----F----PGP---------- 276 (322)
Q Consensus 222 ~V~~~~~l~~~~~--~~~~~~l~~l~~~~~~~~il~~~-~~~-~~~~~~~~--~~~~-----~----~~~---------- 276 (322)
+|+|..++||+.+ +.+..+++++.+++++||++.+. ++. ........ .+.- + ..+
T Consensus 96 ~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~ 175 (252)
T d1ri5a_ 96 VISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRDVILERYKQGRMSNDFYKIELEKMEDVPMESVREYRFT 175 (252)
T ss_dssp EEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECHHHHHHHHHHTCCBCSSEEEECCCCSSCCTTTCCEEEEE
T ss_pred EEEEcceeeecCCCHHHHHHHHHHHhceeCCCCEEEEEecCHHHHHHHHHhcccCCceEEEecccccCCcCcCceEEEEE
Confidence 9999999999854 33678999999998777766542 221 11111110 0000 0 000
Q ss_pred ----CCccccccCCHHHHHHHHHHCCCEEEEEe
Q 020710 277 ----SKATRAYLHAEADVERALQKVGWKIRKRG 305 (322)
Q Consensus 277 ----~~~~~~~~~~~~~~~~~l~~aGf~vv~~~ 305 (322)
......|+.+.+.+.++++++||++++..
T Consensus 176 ~~~~~~~~~E~l~~~~~l~~~~~~~g~~lv~~~ 208 (252)
T d1ri5a_ 176 LLDSVNNCIEYFVDFTRMVDGFKRLGLSLVERK 208 (252)
T ss_dssp ETTSCSSEEEECCCHHHHHHHHHTTTEEEEEEE
T ss_pred cccccccCcccccCHHHHHHHHHHcCCEEEEEe
Confidence 01112235578899999999999988753
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.77 E-value=5e-19 Score=155.41 Aligned_cols=99 Identities=24% Similarity=0.387 Sum_probs=86.0
Q ss_pred CCCCeEEEECCCcccchHHHHhc---CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--CCCcc
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQ---GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL--DGKYD 221 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~fD 221 (322)
.++.+|||||||+|.++..+++. +.+|+|+|+|+.|++.|+++....+... +|.++|+.++ +++||
T Consensus 26 ~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~---------~f~~~d~~~~~~~~~fD 96 (281)
T d2gh1a1 26 TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDS---------EFLEGDATEIELNDKYD 96 (281)
T ss_dssp CSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSSEE---------EEEESCTTTCCCSSCEE
T ss_pred CCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccccc---------cccccccccccccCCce
Confidence 46789999999999999999875 6789999999999999999988766543 8999999876 57899
Q ss_pred EEEEcccccccCcchHHHHHHHHHhccCCeEEEEE
Q 020710 222 TVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSF 256 (322)
Q Consensus 222 ~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~ 256 (322)
+|+|..+++|++++. .+++++.+.+++||.+.+
T Consensus 97 ~v~~~~~l~~~~d~~--~~l~~~~~~LkpgG~lii 129 (281)
T d2gh1a1 97 IAICHAFLLHMTTPE--TMLQKMIHSVKKGGKIIC 129 (281)
T ss_dssp EEEEESCGGGCSSHH--HHHHHHHHTEEEEEEEEE
T ss_pred EEEEehhhhcCCCHH--HHHHHHHHHcCcCcEEEE
Confidence 999999999999955 999999998877775543
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.75 E-value=3.4e-19 Score=156.32 Aligned_cols=148 Identities=16% Similarity=0.183 Sum_probs=104.3
Q ss_pred CCCeEEEECCCcccchHHHHhc--------CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEccccc----
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQ--------GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLES---- 215 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~--------~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~---- 215 (322)
+..+|||||||+|.++..+++. +.+++|||+|+.|++.++++..+...... ....+...++++
T Consensus 40 ~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 114 (280)
T d1jqea_ 40 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLEN-----VKFAWHKETSSEYQSR 114 (280)
T ss_dssp SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTT-----EEEEEECSCHHHHHHH
T ss_pred CCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhcccccc-----ccccchhhhhhhhcch
Confidence 4458999999999998887653 34689999999999999998765322110 111344444432
Q ss_pred -----CCCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEE---CCChhhHHHHHHhhccCCCCCCccccccCCH
Q 020710 216 -----LDGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSF---APKTFYYDLLKRVGELFPGPSKATRAYLHAE 287 (322)
Q Consensus 216 -----~~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (322)
.+++||+|+|..+++|++++ ..++++++++++++|++.+ .+...+..........+.. ..+..+++.
T Consensus 115 ~~~~~~~~~fD~I~~~~~l~~~~d~--~~~l~~l~~~LkpgG~l~i~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~~ 189 (280)
T d1jqea_ 115 MLEKKELQKWDFIHMIQMLYYVKDI--PATLKFFHSLLGTNAKMLIIVVSGSSGWDKLWKKYGSRFPQ---DDLCQYITS 189 (280)
T ss_dssp HTTSSSCCCEEEEEEESCGGGCSCH--HHHHHHHHHTEEEEEEEEEEEECTTSHHHHHHHHHGGGSCC---CTTSCCCCH
T ss_pred hcccCCCCceeEEEEccceecCCCH--HHHHHHHHhhCCCCCEEEEEEecCcchHHHHHHHHHHhcCC---CcccccCCH
Confidence 16899999999999999984 5999999999877765433 3444444444555444432 223445688
Q ss_pred HHHHHHHHHCCCEEEEEe
Q 020710 288 ADVERALQKVGWKIRKRG 305 (322)
Q Consensus 288 ~~~~~~l~~aGf~vv~~~ 305 (322)
+++.++|.+.||+.+...
T Consensus 190 ~~~~~~L~~~G~~~~~~~ 207 (280)
T d1jqea_ 190 DDLTQMLDNLGLKYECYD 207 (280)
T ss_dssp HHHHHHHHHHTCCEEEEE
T ss_pred HHHHHHHHHCCCceEEEe
Confidence 999999999999865543
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.74 E-value=8.6e-18 Score=145.09 Aligned_cols=163 Identities=17% Similarity=0.076 Sum_probs=105.9
Q ss_pred HHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCC-EEEEEeCCHHHHHHHHHHhHHhhhccCCCC--------C---
Q 020710 135 ENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGA-IVSASDISAAMVAEARKKAEEELLADNGGE--------A--- 202 (322)
Q Consensus 135 ~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~--------~--- 202 (322)
..+.+.+... ..++.+|||||||+|.++..++..+. +|+|+|+|+.|++.|++++.+......... .
T Consensus 39 ~~~~~~~~~~-~~~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (257)
T d2a14a1 39 ECLHKTFGPG-GLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNS 117 (257)
T ss_dssp HHHHHHHSTT-SCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCG
T ss_pred HHHHHHhccc-CCCCCEEEEECCCCCHhHHHHhccccCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhcccc
Confidence 3344444332 34678999999999999888877755 699999999999999998865432210000 0
Q ss_pred ----------CCCC-ceEEccc----c---cCCCCccEEEEcccccccCc--chHHHHHHHHHhccCCeEEEEECC---C
Q 020710 203 ----------PVMP-KFEVKDL----E---SLDGKYDTVVCLDVLIHYPQ--SKADGMIAHLASLAEKRLILSFAP---K 259 (322)
Q Consensus 203 ----------~~~~-~~~~~d~----~---~~~~~fD~V~~~~~l~~~~~--~~~~~~l~~l~~~~~~~~il~~~~---~ 259 (322)
...+ .....+. . ..+++||+|++..++||++. +....+++++.+++++||.+++.. .
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~~ 197 (257)
T d2a14a1 118 GRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRL 197 (257)
T ss_dssp GGHHHHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSC
T ss_pred chHHHHHHHHhhhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEeccc
Confidence 0000 0011111 0 11688999999999999974 236689999999988877665421 1
Q ss_pred hhhHHHHHHhhccCCCCCCccccccCCHHHHHHHHHHCCCEEEEEeeeec
Q 020710 260 TFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQKVGWKIRKRGLITT 309 (322)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~vv~~~~~~~ 309 (322)
..+ .......+.+.++.++++++|+++||++++.+....
T Consensus 198 ~~~-----------~~~~~~~~~~~~~~~~~~~~l~~aGf~v~~~~~~~~ 236 (257)
T d2a14a1 198 PSY-----------MVGKREFSCVALEKGEVEQAVLDAGFDIEQLLHSPQ 236 (257)
T ss_dssp CEE-----------EETTEEEECCCCCHHHHHHHHHHTTEEEEEEEEECC
T ss_pred ccc-----------eeccccccccCCCHHHHHHHHHHCCCEEEEEEEecc
Confidence 110 000112233456899999999999999998765543
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.74 E-value=2.4e-18 Score=148.83 Aligned_cols=151 Identities=15% Similarity=0.088 Sum_probs=110.4
Q ss_pred CCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-CCCccEEE
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-DGKYDTVV 224 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~fD~V~ 224 (322)
...+|||||||+|.++..++++ +.+++++|+ +.+++.+++++...+..+++ .++.+|+.+. +..||+|+
T Consensus 81 ~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri-------~~~~~d~~~~~p~~~D~v~ 152 (256)
T d1qzza2 81 AVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRV-------TVAEGDFFKPLPVTADVVL 152 (256)
T ss_dssp TCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTE-------EEEECCTTSCCSCCEEEEE
T ss_pred cCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcCCccee-------eeeeeeccccccccchhhh
Confidence 5679999999999999999998 678999998 78999999999888877665 8899998664 66799999
Q ss_pred EcccccccCcchHHHHHHHHHhccCCeE-EEEECCC----hhhHHHHHHhhccCCCCCCccccccCCHHHHHHHHHHCCC
Q 020710 225 CLDVLIHYPQSKADGMIAHLASLAEKRL-ILSFAPK----TFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQKVGW 299 (322)
Q Consensus 225 ~~~~l~~~~~~~~~~~l~~l~~~~~~~~-il~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf 299 (322)
+.++|||++++....+|+++++.+++|+ ++++..- ............+... ....+..++.+++.++++++||
T Consensus 153 ~~~vLh~~~d~~~~~lL~~i~~~LkpgG~llI~d~~~~~~~~~~~~~~~~~d~~ml--~~~~g~~rt~~e~~~ll~~AGf 230 (256)
T d1qzza2 153 LSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRML--TFMGGRVRTRDEVVDLAGSAGL 230 (256)
T ss_dssp EESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHH--HHHSCCCCCHHHHHHHHHTTTE
T ss_pred ccccccccCcHHHHHHHHHHHhhcCCcceeEEEEeccCCCCcccHHHHHHHHHHHH--hhCCCccCCHHHHHHHHHHCCC
Confidence 9999999999888899999999876666 3333211 1111111110000000 0011223578999999999999
Q ss_pred EEEEEeeee
Q 020710 300 KIRKRGLIT 308 (322)
Q Consensus 300 ~vv~~~~~~ 308 (322)
++++.....
T Consensus 231 ~~~~~~~~~ 239 (256)
T d1qzza2 231 ALASERTSG 239 (256)
T ss_dssp EEEEEEEEC
T ss_pred ceeEEEEeC
Confidence 999876543
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.74 E-value=2.4e-17 Score=143.13 Aligned_cols=164 Identities=17% Similarity=0.099 Sum_probs=105.3
Q ss_pred HHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc-CCEEEEEeCCHHHHHHHHHHhHHhhhccCCC------------C
Q 020710 135 ENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ-GAIVSASDISAAMVAEARKKAEEELLADNGG------------E 201 (322)
Q Consensus 135 ~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~------------~ 201 (322)
..+.+.+.. +..++.+|||||||+|.+....+.. +.+|+|+|+|+.|++.+++++.+........ .
T Consensus 42 ~~~~~~f~~-g~~~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 120 (263)
T d2g72a1 42 RCLAQTFAT-GEVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKG 120 (263)
T ss_dssp HHHHHHHHT-SCSCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSC
T ss_pred HHHHHHcCC-CCCCCcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhcccc
Confidence 344444443 3456889999999999887655544 6689999999999999998765432110000 0
Q ss_pred C----------CCCCceEEcccccC---------CCCccEEEEcccccccCc--chHHHHHHHHHhccCCeEEEEECCCh
Q 020710 202 A----------PVMPKFEVKDLESL---------DGKYDTVVCLDVLIHYPQ--SKADGMIAHLASLAEKRLILSFAPKT 260 (322)
Q Consensus 202 ~----------~~~~~~~~~d~~~~---------~~~fD~V~~~~~l~~~~~--~~~~~~l~~l~~~~~~~~il~~~~~~ 260 (322)
. .........|+... +++||+|++..++||++. +....+++++.+++++||++++....
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~ 200 (263)
T d2g72a1 121 ECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGAL 200 (263)
T ss_dssp CCHHHHHHHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEE
T ss_pred chhhhhHHHhhhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEeccc
Confidence 0 00001223344321 468999999999999974 24678999999999888877553211
Q ss_pred hhHHHHHHhhccCCC-CCCccccccCCHHHHHHHHHHCCCEEEEEeeee
Q 020710 261 FYYDLLKRVGELFPG-PSKATRAYLHAEADVERALQKVGWKIRKRGLIT 308 (322)
Q Consensus 261 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~aGf~vv~~~~~~ 308 (322)
...+.. .......+.++.+++.++|+++||++++.+...
T Consensus 201 ---------~~~~~~~~~~~~~~~~~t~e~v~~~l~~aGf~v~~~~~~~ 240 (263)
T d2g72a1 201 ---------EESWYLAGEARLTVVPVSEEEVREALVRSGYKVRDLRTYI 240 (263)
T ss_dssp ---------SCCEEEETTEEEECCCCCHHHHHHHHHHTTEEEEEEEEEE
T ss_pred ---------CCcccccCCcccccCCCCHHHHHHHHHHCCCeEEEEEEee
Confidence 000100 011123345699999999999999998866554
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.72 E-value=1.9e-17 Score=142.37 Aligned_cols=143 Identities=20% Similarity=0.206 Sum_probs=110.6
Q ss_pred hcCchhHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCC
Q 020710 127 RLGHSKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMP 206 (322)
Q Consensus 127 ~~~~~~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~ 206 (322)
..++..+...+++++... ..++.+|||+|||+|.++..+++.|++|+|+|+|+.|++.|++++..+++.+
T Consensus 100 GTG~H~TT~l~l~~l~~~-~~~g~~VLDiGcGsG~l~i~aa~~g~~V~gvDis~~av~~A~~na~~n~~~~--------- 169 (254)
T d2nxca1 100 GTGHHETTRLALKALARH-LRPGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAEANAKRNGVRP--------- 169 (254)
T ss_dssp --CCSHHHHHHHHHHHHH-CCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHHTTCCC---------
T ss_pred CccccchhhHHHHHHHhh-cCccCEEEEcccchhHHHHHHHhcCCEEEEEECChHHHHHHHHHHHHcCCce---------
Confidence 344455666777777654 3578899999999999999999999999999999999999999998887765
Q ss_pred ceEEcccccC--CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCCCCCcccccc
Q 020710 207 KFEVKDLESL--DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYL 284 (322)
Q Consensus 207 ~~~~~d~~~~--~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (322)
.+.++|+.+. .++||+|+++...+ .+..+++.+++.+++||.+.+.. ++ .
T Consensus 170 ~~~~~d~~~~~~~~~fD~V~ani~~~-----~l~~l~~~~~~~LkpGG~lilSg-------------il----------~ 221 (254)
T d2nxca1 170 RFLEGSLEAALPFGPFDLLVANLYAE-----LHAALAPRYREALVPGGRALLTG-------------IL----------K 221 (254)
T ss_dssp EEEESCHHHHGGGCCEEEEEEECCHH-----HHHHHHHHHHHHEEEEEEEEEEE-------------EE----------G
T ss_pred eEEeccccccccccccchhhhccccc-----cHHHHHHHHHHhcCCCcEEEEEe-------------cc----------h
Confidence 8899997654 68999999864433 25578888988888887776521 00 1
Q ss_pred CCHHHHHHHHHHCCCEEEEEeee
Q 020710 285 HAEADVERALQKVGWKIRKRGLI 307 (322)
Q Consensus 285 ~~~~~~~~~l~~aGf~vv~~~~~ 307 (322)
...+++.+.++++||++++....
T Consensus 222 ~~~~~v~~~~~~~Gf~~~~~~~~ 244 (254)
T d2nxca1 222 DRAPLVREAMAGAGFRPLEEAAE 244 (254)
T ss_dssp GGHHHHHHHHHHTTCEEEEEEEE
T ss_pred hhHHHHHHHHHHCCCEEEEEEEE
Confidence 13578999999999999876543
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.67 E-value=3.8e-18 Score=145.20 Aligned_cols=146 Identities=16% Similarity=0.115 Sum_probs=101.5
Q ss_pred HHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc-CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcc
Q 020710 134 VENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ-GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKD 212 (322)
Q Consensus 134 ~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d 212 (322)
.+.+.+.+.. ++.+|||||||+|..+..+++. +.+|+|||+|+.|++.|++++....... .++..|
T Consensus 43 ~~~la~~~~~----~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~~~a~~~~~~~~~~~---------~~~~~~ 109 (229)
T d1zx0a1 43 MHALAAAASS----KGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKV---------IPLKGL 109 (229)
T ss_dssp HHHHHHHHTT----TCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCSSEE---------EEEESC
T ss_pred HHHHHHhhcc----CCCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHHHHHHHHhhhccccc---------cccccc
Confidence 3444444443 4789999999999999999987 4689999999999999999987655443 666666
Q ss_pred cccC-----CCCccEEE-----EcccccccCcchHHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCCCCCcccc
Q 020710 213 LESL-----DGKYDTVV-----CLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRA 282 (322)
Q Consensus 213 ~~~~-----~~~fD~V~-----~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (322)
+... +++||.|+ +...++|+++ ...+++++++++++||++.+........ .+........
T Consensus 110 ~~~~~~~~~~~~fD~i~fD~~~~~~~~~~~~~--~~~~~~~~~r~LkpGG~~~~~~~~~~~~-------~~~~~~~~~~- 179 (229)
T d1zx0a1 110 WEDVAPTLPDGHFDGILYDTYPLSEETWHTHQ--FNFIKNHAFRLLKPGGVLTYCNLTSWGE-------LMKSKYSDIT- 179 (229)
T ss_dssp HHHHGGGSCTTCEEEEEECCCCCBGGGTTTHH--HHHHHHTHHHHEEEEEEEEECCHHHHHH-------HTTTTCSCHH-
T ss_pred ccccccccccccccceeecccccccccccccC--HHHHHHHHHHHcCCCcEEEEEecCCcch-------hhhhhhhhcc-
Confidence 5432 67888887 4667778777 4599999999999999887754322111 1111111111
Q ss_pred ccCCHHHHHHHHHHCCCEEEE
Q 020710 283 YLHAEADVERALQKVGWKIRK 303 (322)
Q Consensus 283 ~~~~~~~~~~~l~~aGf~vv~ 303 (322)
....+.+...+.++||++.+
T Consensus 180 -~~~~~~~~~~l~~agF~~~~ 199 (229)
T d1zx0a1 180 -IMFEETQVPALLEAGFRREN 199 (229)
T ss_dssp -HHHHHHTHHHHHHTTCCGGG
T ss_pred -hhhhhHHHHHHHHCCCeeEE
Confidence 11245677888899997543
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.67 E-value=1.1e-16 Score=140.89 Aligned_cols=116 Identities=23% Similarity=0.274 Sum_probs=87.0
Q ss_pred HHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccc
Q 020710 135 ENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLE 214 (322)
Q Consensus 135 ~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 214 (322)
+.+.+.+... ++.+|||||||+|.++..|++.|++|+|+|+|+.|++.|+++....+.... .....+...|+.
T Consensus 46 ~~l~~~l~~~---~~~~vLD~GcG~G~~~~~la~~g~~v~gvD~S~~ml~~A~~~~~~~~~~~~----~~~~~~~~~~~~ 118 (292)
T d1xvaa_ 46 AWLLGLLRQH---GCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPA----FDKWVIEEANWL 118 (292)
T ss_dssp HHHHHHHHHT---TCCEEEESSCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTTSHH----HHTCEEEECCGG
T ss_pred HHHHHHhhhc---CCCEEEEecCCCcHHHHHHHHcCCeeeeccCchHHHHHHHHHHHhcccccc----cceeeeeecccc
Confidence 4455666654 467999999999999999999999999999999999999998876543210 001134444432
Q ss_pred c------CCCCccEEEEcc-cccccCcc-----hHHHHHHHHHhccCCeEEEEEC
Q 020710 215 S------LDGKYDTVVCLD-VLIHYPQS-----KADGMIAHLASLAEKRLILSFA 257 (322)
Q Consensus 215 ~------~~~~fD~V~~~~-~l~~~~~~-----~~~~~l~~l~~~~~~~~il~~~ 257 (322)
. ..++||+|+|.. +++|++++ +...+++++++++++||++++.
T Consensus 119 ~~~~~~~~~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~ 173 (292)
T d1xvaa_ 119 TLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVID 173 (292)
T ss_dssp GHHHHSCCTTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred ccccccCCCCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEe
Confidence 2 157899999864 89999753 3678999999999888877663
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.64 E-value=1.9e-16 Score=134.20 Aligned_cols=149 Identities=16% Similarity=0.052 Sum_probs=106.0
Q ss_pred hhHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCce
Q 020710 131 SKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKF 208 (322)
Q Consensus 131 ~~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~ 208 (322)
+++...++.-+...+..++.+|||+|||+|..+..+++. +..|+|||+|+.|++.++++....... .+
T Consensus 57 sklaA~i~~gl~~l~ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~~ni----------~~ 126 (230)
T d1g8sa_ 57 SKLAAAIIKGLKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENI----------IP 126 (230)
T ss_dssp CHHHHHHHTTCCCCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTE----------EE
T ss_pred cHHHHHHHhhHHhCCCCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhhccc----------ce
Confidence 455555655555555678999999999999999999987 358999999999999999887654322 56
Q ss_pred EEcccccC----CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCCCCCcccccc
Q 020710 209 EVKDLESL----DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYL 284 (322)
Q Consensus 209 ~~~d~~~~----~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (322)
+..|.... +..+|++++...++|.++ ...+++++++.+++||.+.+...... ... .....
T Consensus 127 i~~d~~~~~~~~~~~~~v~~i~~~~~~~~~--~~~~l~~~~r~LKpgG~~~i~~k~~~----------~d~-~~~~~--- 190 (230)
T d1g8sa_ 127 ILGDANKPQEYANIVEKVDVIYEDVAQPNQ--AEILIKNAKWFLKKGGYGMIAIKARS----------IDV-TKDPK--- 190 (230)
T ss_dssp EECCTTCGGGGTTTCCCEEEEEECCCSTTH--HHHHHHHHHHHEEEEEEEEEEEEGGG----------TCS-SSCHH---
T ss_pred EEEeeccCcccccccceeEEeeccccchHH--HHHHHHHHHHhcccCceEEEEeeccc----------cCC-CCCHH---
Confidence 77776654 577888888888877776 55899999998877775544221110 000 00000
Q ss_pred CCHHHHHHHHHHCCCEEEEEe
Q 020710 285 HAEADVERALQKVGWKIRKRG 305 (322)
Q Consensus 285 ~~~~~~~~~l~~aGf~vv~~~ 305 (322)
...+++.+.|+++||++++..
T Consensus 191 ~~~~e~~~~L~~aGF~ive~i 211 (230)
T d1g8sa_ 191 EIFKEQKEILEAGGFKIVDEV 211 (230)
T ss_dssp HHHHHHHHHHHHHTEEEEEEE
T ss_pred HHHHHHHHHHHHcCCEEEEEe
Confidence 124678889999999998754
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.64 E-value=1.3e-15 Score=125.12 Aligned_cols=107 Identities=18% Similarity=0.112 Sum_probs=88.2
Q ss_pred HHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccc
Q 020710 135 ENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLE 214 (322)
Q Consensus 135 ~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 214 (322)
..++..+.. .++.+|||+|||+|.++..+++.+.+|+|+|+++.|++.|+++++..++..++ +++++|+.
T Consensus 23 ~~il~~l~~---~~g~~VLDiGcGsG~~s~~lA~~~~~V~avD~~~~~l~~a~~n~~~~gl~~~v-------~~~~gda~ 92 (186)
T d1l3ia_ 23 CLIMCLAEP---GKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNV-------TLMEGDAP 92 (186)
T ss_dssp HHHHHHHCC---CTTCEEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCTTE-------EEEESCHH
T ss_pred HHHHHhcCC---CCCCEEEEEECCeEcccccccccceEEEEecCCHHHHHHHHHHHHHcCCCcce-------EEEECchh
Confidence 455555544 47899999999999999999998889999999999999999999998876544 89999987
Q ss_pred cC---CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEE
Q 020710 215 SL---DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSF 256 (322)
Q Consensus 215 ~~---~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~ 256 (322)
+. ...||.|++....++ ...+++.+.+.+++++.+.+
T Consensus 93 ~~~~~~~~~D~v~~~~~~~~-----~~~~~~~~~~~LkpgG~lvi 132 (186)
T d1l3ia_ 93 EALCKIPDIDIAVVGGSGGE-----LQEILRIIKDKLKPGGRIIV 132 (186)
T ss_dssp HHHTTSCCEEEEEESCCTTC-----HHHHHHHHHHTEEEEEEEEE
T ss_pred hcccccCCcCEEEEeCcccc-----chHHHHHHHHHhCcCCEEEE
Confidence 65 589999999876654 34788888888777775544
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.61 E-value=3.4e-15 Score=129.64 Aligned_cols=101 Identities=21% Similarity=0.236 Sum_probs=79.1
Q ss_pred HHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEc
Q 020710 134 VENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVK 211 (322)
Q Consensus 134 ~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (322)
.+.+...+......++.+|||||||+|.++..+++. +.+++|+|+|+.|++.|+++... +.|.++
T Consensus 70 ~~~~~~~l~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~~~-------------~~~~~~ 136 (268)
T d1p91a_ 70 RDAIVAQLRERLDDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQ-------------VTFCVA 136 (268)
T ss_dssp HHHHHHHHHHHSCTTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTT-------------SEEEEC
T ss_pred HHHHHHHHHHhcCCCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhccccc-------------ccceee
Confidence 345555555443456889999999999999999988 56899999999999999876432 289999
Q ss_pred ccccC---CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEE
Q 020710 212 DLESL---DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSF 256 (322)
Q Consensus 212 d~~~~---~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~ 256 (322)
|+.++ +++||+|++..+++|+ +++++++++||++.+
T Consensus 137 d~~~l~~~~~sfD~v~~~~~~~~~---------~e~~rvLkpgG~l~~ 175 (268)
T d1p91a_ 137 SSHRLPFSDTSMDAIIRIYAPCKA---------EELARVVKPGGWVIT 175 (268)
T ss_dssp CTTSCSBCTTCEEEEEEESCCCCH---------HHHHHHEEEEEEEEE
T ss_pred ehhhccCCCCCEEEEeecCCHHHH---------HHHHHHhCCCcEEEE
Confidence 99886 7899999998887763 457777777775554
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.60 E-value=2.1e-15 Score=124.70 Aligned_cols=110 Identities=18% Similarity=0.169 Sum_probs=88.2
Q ss_pred HHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEccccc
Q 020710 136 NTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLES 215 (322)
Q Consensus 136 ~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 215 (322)
.+++.+.. .++.+|||+|||+|.++..+++.+.+|+++|+|+.+++.+++++...++.+ .++++..+|+.+
T Consensus 43 lLi~~l~~---~~~~~VLDiGcG~G~~~~~la~~~~~v~~iD~s~~~i~~a~~n~~~~~l~~------~~i~~~~~d~~~ 113 (194)
T d1dusa_ 43 ILVENVVV---DKDDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKENIKLNNLDN------YDIRVVHSDLYE 113 (194)
T ss_dssp HHHHHCCC---CTTCEEEEETCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCTT------SCEEEEECSTTT
T ss_pred HHHHhCCc---CCCCeEEEEeecCChhHHHHHhhccccceeeeccccchhHHHHHHHhCCcc------ceEEEEEcchhh
Confidence 34555543 368899999999999999999989999999999999999999998776643 224888899865
Q ss_pred C--CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEE
Q 020710 216 L--DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILS 255 (322)
Q Consensus 216 ~--~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~ 255 (322)
. +++||+|+|..++++.. +....+++++.+.++++|++.
T Consensus 114 ~~~~~~fD~Ii~~~p~~~~~-~~~~~~l~~~~~~LkpgG~l~ 154 (194)
T d1dusa_ 114 NVKDRKYNKIITNPPIRAGK-EVLHRIIEEGKELLKDNGEIW 154 (194)
T ss_dssp TCTTSCEEEEEECCCSTTCH-HHHHHHHHHHHHHEEEEEEEE
T ss_pred hhccCCceEEEEcccEEecc-hhhhhHHHHHHHhcCcCcEEE
Confidence 4 68999999998876544 335689999999887777543
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.52 E-value=2.4e-14 Score=122.22 Aligned_cols=123 Identities=16% Similarity=0.252 Sum_probs=95.3
Q ss_pred hcCCCCCCeEEEECCCcccchHHHHhc---CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--C
Q 020710 143 DEGSLKGIAVCDAGCGTGSLAIPLAKQ---GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL--D 217 (322)
Q Consensus 143 ~~~~~~~~~VLDvGcG~G~~~~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~ 217 (322)
..+..++.+|||+|||+|.++..|++. ..+|+++|+++++++.|++++.+.+...+ +++..+|+.+. +
T Consensus 80 ~l~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~n-------v~~~~~Di~~~~~~ 152 (250)
T d1yb2a1 80 RCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGN-------VRTSRSDIADFISD 152 (250)
T ss_dssp -CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTT-------EEEECSCTTTCCCS
T ss_pred HcCCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCc-------eEEEEeeeeccccc
Confidence 334568999999999999999999986 46899999999999999999987654333 38999998875 6
Q ss_pred CCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEE-CCChhhHHHHHHhhccCCCCCCccccccCCHHHHHHHHHH
Q 020710 218 GKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSF-APKTFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQK 296 (322)
Q Consensus 218 ~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 296 (322)
+.||.|++ +++++. .+++++.+.+++||++.+ .|... ..+.+.+.+++
T Consensus 153 ~~fD~V~l-----d~p~p~--~~l~~~~~~LKpGG~lv~~~P~i~------------------------Qv~~~~~~l~~ 201 (250)
T d1yb2a1 153 QMYDAVIA-----DIPDPW--NHVQKIASMMKPGSVATFYLPNFD------------------------QSEKTVLSLSA 201 (250)
T ss_dssp CCEEEEEE-----CCSCGG--GSHHHHHHTEEEEEEEEEEESSHH------------------------HHHHHHHHSGG
T ss_pred ceeeeeee-----cCCchH--HHHHHHHHhcCCCceEEEEeCCcC------------------------hHHHHHHHHHH
Confidence 88999985 678866 889999998888877654 23210 12355567778
Q ss_pred CCCEEEE
Q 020710 297 VGWKIRK 303 (322)
Q Consensus 297 aGf~vv~ 303 (322)
.||..++
T Consensus 202 ~gf~~i~ 208 (250)
T d1yb2a1 202 SGMHHLE 208 (250)
T ss_dssp GTEEEEE
T ss_pred CCCceeE
Confidence 8998766
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=99.51 E-value=2.7e-14 Score=123.38 Aligned_cols=155 Identities=19% Similarity=0.172 Sum_probs=114.5
Q ss_pred hcCCCcccchhhhhhcCchhHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHh
Q 020710 113 YGETDDVNRVQLDIRLGHSKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKA 190 (322)
Q Consensus 113 y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~ 190 (322)
|+....+++....+|+.++.+++.++..+... +.+|||+|||+|..+..++.. ..+|+++|+|+.+++.|++++
T Consensus 77 ~~~~~~v~~~VlIPRpeTE~lv~~~l~~~~~~----~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na 152 (274)
T d2b3ta1 77 WSLPLFVSPATLIPRPDTECLVEQALARLPEQ----PCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNA 152 (274)
T ss_dssp TTEEEECCTTSCCCCTTHHHHHHHHHHHSCSS----CCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHH
T ss_pred eeeEEEEeccccccccchhhhhhhHhhhhccc----ccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHH
Confidence 44445677778888888888888887766543 678999999999999999876 679999999999999999999
Q ss_pred HHhhhccCCCCCCCCCceEEcccccC--CCCccEEEEccccc-------------ccCc----------chHHHHHHHHH
Q 020710 191 EEELLADNGGEAPVMPKFEVKDLESL--DGKYDTVVCLDVLI-------------HYPQ----------SKADGMIAHLA 245 (322)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~fD~V~~~~~l~-------------~~~~----------~~~~~~l~~l~ 245 (322)
...+..+ ++|+++|+.+. +++||+|+|+--.. |-|. .....+++...
T Consensus 153 ~~~~~~~--------v~~~~~d~~~~~~~~~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~ 224 (274)
T d2b3ta1 153 QHLAIKN--------IHILQSDWFSALAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSR 224 (274)
T ss_dssp HHHTCCS--------EEEECCSTTGGGTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHG
T ss_pred HHhCccc--------ceeeecccccccCCCceeEEEecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHH
Confidence 8887642 38999998765 57999999975432 1111 11345666666
Q ss_pred hccCCeEEEEECCChhhHHHHHHhhccCCCCCCccccccCCHHHHHHHHHHCCCEEEE
Q 020710 246 SLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQKVGWKIRK 303 (322)
Q Consensus 246 ~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~vv~ 303 (322)
+.+.++|.+.+..+. -..+.+.+++++.||..++
T Consensus 225 ~~L~~~G~l~lEig~------------------------~q~~~v~~~l~~~gf~~i~ 258 (274)
T d2b3ta1 225 NALVSGGFLLLEHGW------------------------QQGEAVRQAFILAGYHDVE 258 (274)
T ss_dssp GGEEEEEEEEEECCS------------------------SCHHHHHHHHHHTTCTTCC
T ss_pred HhcCCCCEEEEEECc------------------------hHHHHHHHHHHHCCCCeEE
Confidence 666666666553211 1256888999999997543
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.51 E-value=3.6e-14 Score=118.79 Aligned_cols=106 Identities=17% Similarity=0.135 Sum_probs=83.2
Q ss_pred hHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc---CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCce
Q 020710 132 KTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ---GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKF 208 (322)
Q Consensus 132 ~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~ 208 (322)
.++..+++.+.. .++.+|||||||+|+++..+++. ..+|+++|+++.+++.|++++...+..+ +.+
T Consensus 62 ~~~a~~l~~l~l---~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n--------~~~ 130 (213)
T d1dl5a1 62 SLMALFMEWVGL---DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIEN--------VIF 130 (213)
T ss_dssp HHHHHHHHHTTC---CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCS--------EEE
T ss_pred hhhHHHHHhhhc---cccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccc--------ccc
Confidence 345667777664 47999999999999999999876 4589999999999999999998876654 378
Q ss_pred EEcccccC---CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEE
Q 020710 209 EVKDLESL---DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSF 256 (322)
Q Consensus 209 ~~~d~~~~---~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~ 256 (322)
+++|+.+. +++||+|++..+++|+|+ .++ +.+++||.+.+
T Consensus 131 ~~~d~~~~~~~~~~fD~I~~~~~~~~~p~----~l~----~~LkpGG~lv~ 173 (213)
T d1dl5a1 131 VCGDGYYGVPEFSPYDVIFVTVGVDEVPE----TWF----TQLKEGGRVIV 173 (213)
T ss_dssp EESCGGGCCGGGCCEEEEEECSBBSCCCH----HHH----HHEEEEEEEEE
T ss_pred ccCchHHccccccchhhhhhhccHHHhHH----HHH----HhcCCCcEEEE
Confidence 88888764 678999999999999876 333 33555555443
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.50 E-value=7.8e-14 Score=120.33 Aligned_cols=130 Identities=17% Similarity=0.180 Sum_probs=99.2
Q ss_pred HHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc---CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEc
Q 020710 135 ENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ---GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVK 211 (322)
Q Consensus 135 ~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (322)
..++.++. ..++.+|||+|||+|.++..+++. +.+|+++|+++++++.|++++...+..+++ .+...
T Consensus 93 ~~Ii~~l~---i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v-------~~~~~ 162 (266)
T d1o54a_ 93 SFIAMMLD---VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERV-------TIKVR 162 (266)
T ss_dssp HHHHHHTT---CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGE-------EEECC
T ss_pred HHHHHhhC---CCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCc-------EEEec
Confidence 34444444 458999999999999999999986 468999999999999999999988775543 77777
Q ss_pred ccccC--CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEE-ECCChhhHHHHHHhhccCCCCCCccccccCCHH
Q 020710 212 DLESL--DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILS-FAPKTFYYDLLKRVGELFPGPSKATRAYLHAEA 288 (322)
Q Consensus 212 d~~~~--~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (322)
|+... ...||.|+ +|++++. .+++++.+++++||.+. +.|... ..+
T Consensus 163 d~~~~~~~~~~D~V~-----~d~p~p~--~~l~~~~~~LKpGG~lv~~~P~~~------------------------Qv~ 211 (266)
T d1o54a_ 163 DISEGFDEKDVDALF-----LDVPDPW--NYIDKCWEALKGGGRFATVCPTTN------------------------QVQ 211 (266)
T ss_dssp CGGGCCSCCSEEEEE-----ECCSCGG--GTHHHHHHHEEEEEEEEEEESSHH------------------------HHH
T ss_pred cccccccccceeeeE-----ecCCCHH--HHHHHHHhhcCCCCEEEEEeCccc------------------------HHH
Confidence 86543 56788887 5889876 89999999887777664 333210 134
Q ss_pred HHHHHHHHCCCEEEEEe
Q 020710 289 DVERALQKVGWKIRKRG 305 (322)
Q Consensus 289 ~~~~~l~~aGf~vv~~~ 305 (322)
.+.+.+++.||..++..
T Consensus 212 ~~~~~l~~~gF~~i~~~ 228 (266)
T d1o54a_ 212 ETLKKLQELPFIRIEVW 228 (266)
T ss_dssp HHHHHHHHSSEEEEEEE
T ss_pred HHHHHHHHCCceeEEEE
Confidence 66778889999877643
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.46 E-value=1.1e-13 Score=115.33 Aligned_cols=100 Identities=15% Similarity=0.021 Sum_probs=74.8
Q ss_pred CCCCCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC---CCC
Q 020710 145 GSLKGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL---DGK 219 (322)
Q Consensus 145 ~~~~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~ 219 (322)
+..++.+|||+|||+|..+..+++. ..+|+|||+|+.|++.+++++...+. +.++..|+..+ ...
T Consensus 53 ~lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~n----------i~~i~~d~~~~~~~~~~ 122 (209)
T d1nt2a_ 53 KLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNN----------IIPLLFDASKPWKYSGI 122 (209)
T ss_dssp CCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSS----------EEEECSCTTCGGGTTTT
T ss_pred CCCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccCC----------ceEEEeeccCccccccc
Confidence 3568899999999999999999986 35899999999999999998876532 27888887765 333
Q ss_pred ccEEEE-cccccccCcchHHHHHHHHHhccCCeEEEEE
Q 020710 220 YDTVVC-LDVLIHYPQSKADGMIAHLASLAEKRLILSF 256 (322)
Q Consensus 220 fD~V~~-~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~ 256 (322)
+|.+.+ ...+.|..+ ...+++++.+.+++||.+.+
T Consensus 123 ~~~vd~v~~~~~~~~~--~~~~l~~~~~~LkpgG~l~i 158 (209)
T d1nt2a_ 123 VEKVDLIYQDIAQKNQ--IEILKANAEFFLKEKGEVVI 158 (209)
T ss_dssp CCCEEEEEECCCSTTH--HHHHHHHHHHHEEEEEEEEE
T ss_pred cceEEEEEecccChhh--HHHHHHHHHHHhccCCeEEE
Confidence 333322 233445555 45899999998877776654
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.45 E-value=2.5e-13 Score=116.49 Aligned_cols=110 Identities=20% Similarity=0.259 Sum_probs=85.4
Q ss_pred HHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc---CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEc
Q 020710 135 ENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ---GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVK 211 (322)
Q Consensus 135 ~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (322)
..++.++. ..++.+|||+|||+|.++..|++. ..+|+++|+++++++.|++++...... ...++.|.++
T Consensus 86 s~Ii~~l~---i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~-----~~~nv~~~~~ 157 (264)
T d1i9ga_ 86 AQIVHEGD---IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQ-----PPDNWRLVVS 157 (264)
T ss_dssp HHHHHHTT---CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTS-----CCTTEEEECS
T ss_pred HHHHHHhC---CCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccC-----CCceEEEEec
Confidence 34444444 458999999999999999999987 458999999999999999998765321 1123488999
Q ss_pred ccccC---CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEE-ECCC
Q 020710 212 DLESL---DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILS-FAPK 259 (322)
Q Consensus 212 d~~~~---~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~-~~~~ 259 (322)
|+.+. ++.||.|++ |+|++. .++.++++++++|+.+. +.|.
T Consensus 158 d~~~~~~~~~~fDaV~l-----dlp~P~--~~l~~~~~~LkpGG~lv~~~P~ 202 (264)
T d1i9ga_ 158 DLADSELPDGSVDRAVL-----DMLAPW--EVLDAVSRLLVAGGVLMVYVAT 202 (264)
T ss_dssp CGGGCCCCTTCEEEEEE-----ESSCGG--GGHHHHHHHEEEEEEEEEEESS
T ss_pred ccccccccCCCcceEEE-----ecCCHH--HHHHHHHhccCCCCEEEEEeCc
Confidence 98764 789999985 889977 99999999887777554 4443
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.45 E-value=1.3e-13 Score=116.19 Aligned_cols=113 Identities=17% Similarity=0.148 Sum_probs=83.8
Q ss_pred hHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc---CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCce
Q 020710 132 KTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ---GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKF 208 (322)
Q Consensus 132 ~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~ 208 (322)
.++.++++.|... ..++.+|||||||+|+.+..+++. ..+|+++|+++++++.|++++.+.+..+ ....++.+
T Consensus 61 ~~~a~~le~L~~~-l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~---~~~~~~~~ 136 (224)
T d1i1na_ 61 HMHAYALELLFDQ-LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTL---LSSGRVQL 136 (224)
T ss_dssp HHHHHHHHHTTTT-SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHH---HHTSSEEE
T ss_pred HHHHHHHHHHhhc-cCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCccc---ccccceEE
Confidence 3567788877532 347889999999999999998876 4589999999999999999987655432 01122378
Q ss_pred EEcccccC---CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEE
Q 020710 209 EVKDLESL---DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSF 256 (322)
Q Consensus 209 ~~~d~~~~---~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~ 256 (322)
..+|.... ++.||+|++..+++++|+ .+ .+.+++||.+.+
T Consensus 137 ~~gD~~~~~~~~~~fD~I~~~~~~~~ip~----~l----~~~LkpGG~LV~ 179 (224)
T d1i1na_ 137 VVGDGRMGYAEEAPYDAIHVGAAAPVVPQ----AL----IDQLKPGGRLIL 179 (224)
T ss_dssp EESCGGGCCGGGCCEEEEEECSBBSSCCH----HH----HHTEEEEEEEEE
T ss_pred EEeecccccchhhhhhhhhhhcchhhcCH----HH----HhhcCCCcEEEE
Confidence 88997654 578999999999998875 33 344555555443
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.43 E-value=3e-12 Score=105.78 Aligned_cols=90 Identities=20% Similarity=0.204 Sum_probs=73.9
Q ss_pred HHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCC-EEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEc
Q 020710 133 TVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGA-IVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVK 211 (322)
Q Consensus 133 ~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (322)
.+..++..+...+..++.+|||+|||+|.++..++..|+ +|+|+|+|+.+++.+++++...+... ++...
T Consensus 31 ~a~~~~~~~~~~~dl~g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~~~a~~N~~~~~~~~---------~~~~~ 101 (201)
T d1wy7a1 31 AASELLWLAYSLGDIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKGKF---------KVFIG 101 (201)
T ss_dssp HHHHHHHHHHHTTSSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTTSE---------EEEES
T ss_pred HHHHHHHHHHhcCCCCCCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHcCCCc---------eEEEC
Confidence 344555444444455789999999999999999888875 79999999999999999988776655 89999
Q ss_pred ccccCCCCccEEEEcccccc
Q 020710 212 DLESLDGKYDTVVCLDVLIH 231 (322)
Q Consensus 212 d~~~~~~~fD~V~~~~~l~~ 231 (322)
|+..++++||+|+++--+..
T Consensus 102 d~~~~~~~fD~Vi~nPP~~~ 121 (201)
T d1wy7a1 102 DVSEFNSRVDIVIMNPPFGS 121 (201)
T ss_dssp CGGGCCCCCSEEEECCCCSS
T ss_pred chhhhCCcCcEEEEcCcccc
Confidence 99999999999999876543
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.42 E-value=2.7e-13 Score=114.08 Aligned_cols=113 Identities=17% Similarity=0.038 Sum_probs=83.7
Q ss_pred chhHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc---CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCC
Q 020710 130 HSKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ---GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMP 206 (322)
Q Consensus 130 ~~~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~ 206 (322)
.+++...++.-+...+..++.+|||+|||+|.++.++++. ..+|+|+|+|+.|++.+++++...+..
T Consensus 55 rSKlaa~i~~~l~~l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~~~---------- 124 (227)
T d1g8aa_ 55 RSKLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNI---------- 124 (227)
T ss_dssp TCHHHHHHHTTCCCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTE----------
T ss_pred ccHHHHHHHccccccccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcCCc----------
Confidence 3455566666566555678999999999999999999987 468999999999999999887654322
Q ss_pred ceEEcccccC------CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEE
Q 020710 207 KFEVKDLESL------DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSF 256 (322)
Q Consensus 207 ~~~~~d~~~~------~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~ 256 (322)
..+..|.... ...+|+|++. +.|..+ ...+++++++.+++||++.+
T Consensus 125 ~~i~~d~~~~~~~~~~~~~vD~i~~d--~~~~~~--~~~~l~~~~~~LkpgG~lvi 176 (227)
T d1g8aa_ 125 VPILGDATKPEEYRALVPKVDVIFED--VAQPTQ--AKILIDNAEVYLKRGGYGMI 176 (227)
T ss_dssp EEEECCTTCGGGGTTTCCCEEEEEEC--CCSTTH--HHHHHHHHHHHEEEEEEEEE
T ss_pred eEEEEECCCcccccccccceEEEEEE--ccccch--HHHHHHHHHHhcccCCeEEE
Confidence 5666776443 4678888763 334444 45889999998877775544
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.40 E-value=3.8e-13 Score=111.43 Aligned_cols=101 Identities=15% Similarity=0.126 Sum_probs=83.0
Q ss_pred CCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-----CCCcc
Q 020710 149 GIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-----DGKYD 221 (322)
Q Consensus 149 ~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-----~~~fD 221 (322)
+..|||||||+|.++..+++. ...++|||+++.++..+.++..+.++.| +.++.+|+..+ ++++|
T Consensus 30 ~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~N--------v~~~~~Da~~l~~~~~~~~~d 101 (204)
T d2fcaa1 30 NPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQN--------VKLLNIDADTLTDVFEPGEVK 101 (204)
T ss_dssp CCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSS--------EEEECCCGGGHHHHCCTTSCC
T ss_pred CceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhccC--------chhcccchhhhhcccCchhhh
Confidence 557999999999999999988 6789999999999999999998887754 48999998764 78999
Q ss_pred EEEEcccccccCcch------HHHHHHHHHhccCCeEEEEEC
Q 020710 222 TVVCLDVLIHYPQSK------ADGMIAHLASLAEKRLILSFA 257 (322)
Q Consensus 222 ~V~~~~~l~~~~~~~------~~~~l~~l~~~~~~~~il~~~ 257 (322)
.|++.....|..... ...+++.+++++++||++.+.
T Consensus 102 ~v~i~fp~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~ 143 (204)
T d2fcaa1 102 RVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFK 143 (204)
T ss_dssp EEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEE
T ss_pred ccccccccccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEE
Confidence 999887776544322 147999999988777766553
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.40 E-value=3.1e-13 Score=115.23 Aligned_cols=148 Identities=16% Similarity=0.131 Sum_probs=102.6
Q ss_pred CCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccCCCCccEEEEc
Q 020710 149 GIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESLDGKYDTVVCL 226 (322)
Q Consensus 149 ~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~fD~V~~~ 226 (322)
..+|||||||+|..+..++++ +.+++..|+ |..++.+ +...|+ +|+.+|+.+....+|++++.
T Consensus 81 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~~-------~~~~rv-------~~~~gD~f~~~p~aD~~~l~ 145 (244)
T d1fp2a2 81 LESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENL-------SGSNNL-------TYVGGDMFTSIPNADAVLLK 145 (244)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTC-------CCBTTE-------EEEECCTTTCCCCCSEEEEE
T ss_pred ceEEEEecCCccHHHHHHHHhCCCCeEEEecC-HHHHHhC-------cccCce-------EEEecCcccCCCCCcEEEEE
Confidence 568999999999999999988 779999998 4444332 223344 99999998776678999999
Q ss_pred ccccccCcchHHHHHHHHHhccCCe----EEEEEC---CChhh---H---HHHHHhhccCCCCCCccccccCCHHHHHHH
Q 020710 227 DVLIHYPQSKADGMIAHLASLAEKR----LILSFA---PKTFY---Y---DLLKRVGELFPGPSKATRAYLHAEADVERA 293 (322)
Q Consensus 227 ~~l~~~~~~~~~~~l~~l~~~~~~~----~il~~~---~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (322)
.+||++++++..++|+++++.++++ .++++. +.... . ..+-.+.-.. ..+..++.++++++
T Consensus 146 ~vLHdw~d~~~~~iL~~~~~al~pgg~~~~lli~e~~~~~~~~~~~~~~~~~~~dl~m~~------~~G~ert~~e~~~l 219 (244)
T d1fp2a2 146 YILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMAC------LNGKERNEEEWKKL 219 (244)
T ss_dssp SCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGG------GTCCCEEHHHHHHH
T ss_pred eecccCChHHHHHHHHHHHHHcCcccCCcEEEEEEeecCCCCCCchHHHHHHHHHHHHHh------CCCcCCCHHHHHHH
Confidence 9999999998899999999976443 233321 11111 0 1111111011 11224578999999
Q ss_pred HHHCCCEEEEEeeeecceehhhhhhhc
Q 020710 294 LQKVGWKIRKRGLITTQFYFARLVEAV 320 (322)
Q Consensus 294 l~~aGf~vv~~~~~~~~~~f~~~~~~~ 320 (322)
++++||+++++..... ...++|+.
T Consensus 220 l~~AGf~~~~i~~~~~---~~svIE~~ 243 (244)
T d1fp2a2 220 FIEAGFQHYKISPLTG---FLSLIEIY 243 (244)
T ss_dssp HHHTTCCEEEEEEEET---TEEEEEEE
T ss_pred HHHcCCceEEEEECCC---CeEEEEEe
Confidence 9999999998765543 23566554
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=99.38 E-value=1.1e-12 Score=110.06 Aligned_cols=89 Identities=21% Similarity=0.083 Sum_probs=73.4
Q ss_pred HHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcc
Q 020710 133 TVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKD 212 (322)
Q Consensus 133 ~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d 212 (322)
+...+++.+.. .++.+|||||||+|+++..|++.+.+|+++|+++.+++.|++++.... ++.++.+|
T Consensus 58 ~~a~ml~~L~l---~~g~~VLdIG~GsGy~ta~La~l~~~V~aiE~~~~~~~~A~~~~~~~~----------nv~~~~~d 124 (224)
T d1vbfa_ 58 LGIFMLDELDL---HKGQKVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKLLSYYN----------NIKLILGD 124 (224)
T ss_dssp HHHHHHHHTTC---CTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHTTCS----------SEEEEESC
T ss_pred hHHHHHHHhhh---cccceEEEecCCCCHHHHHHHHHhcccccccccHHHHHHHHHHHhccc----------ccccccCc
Confidence 44556666654 478999999999999999999999999999999999999998765421 23899999
Q ss_pred cccC---CCCccEEEEcccccccCc
Q 020710 213 LESL---DGKYDTVVCLDVLIHYPQ 234 (322)
Q Consensus 213 ~~~~---~~~fD~V~~~~~l~~~~~ 234 (322)
.... .++||.|++..+++++|+
T Consensus 125 ~~~g~~~~~pfD~Iiv~~a~~~ip~ 149 (224)
T d1vbfa_ 125 GTLGYEEEKPYDRVVVWATAPTLLC 149 (224)
T ss_dssp GGGCCGGGCCEEEEEESSBBSSCCH
T ss_pred hhhcchhhhhHHHHHhhcchhhhhH
Confidence 7653 578999999999998876
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.37 E-value=1.9e-12 Score=115.26 Aligned_cols=100 Identities=24% Similarity=0.233 Sum_probs=82.5
Q ss_pred CCCeEEEECCCcccchHHHHhcCC-EEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC---CCCccEE
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQGA-IVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL---DGKYDTV 223 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~fD~V 223 (322)
++.+|||||||+|.++..+++.|+ +|+++|.|+ +++.|+++....+...++ .++.+|+.++ +++||+|
T Consensus 38 ~~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~-~~~~a~~~~~~~~~~~~i-------~~i~~~~~~l~~~~~~~D~i 109 (328)
T d1g6q1_ 38 KDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-IIEMAKELVELNGFSDKI-------TLLRGKLEDVHLPFPKVDII 109 (328)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTCCSEEEEEESST-HHHHHHHHHHHTTCTTTE-------EEEESCTTTSCCSSSCEEEE
T ss_pred CcCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCH-HHHHHHHHHHHhCccccc-------eEEEeehhhccCcccceeEE
Confidence 578999999999999999999986 799999996 778899988888776654 8899998876 5789999
Q ss_pred EEcccccccCcc-hHHHHHHHHHhccCCeEEEE
Q 020710 224 VCLDVLIHYPQS-KADGMIAHLASLAEKRLILS 255 (322)
Q Consensus 224 ~~~~~l~~~~~~-~~~~~l~~l~~~~~~~~il~ 255 (322)
++..+.+++..+ ....++..+.+++++||++.
T Consensus 110 ~se~~~~~~~~e~~~~~~~~a~~r~LkpgG~ii 142 (328)
T d1g6q1_ 110 ISEWMGYFLLYESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp EECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred EEEecceeeccchhHHHHHHHHHhccCCCeEEE
Confidence 998877776643 35678888888887777663
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.36 E-value=8.6e-13 Score=112.36 Aligned_cols=141 Identities=11% Similarity=0.061 Sum_probs=96.2
Q ss_pred CCCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccCCCCccEEE
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESLDGKYDTVV 224 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~fD~V~ 224 (322)
....+|||||||+|.++..++++ +.+++..|+ |..++. .....+ ++++.+|+.+.....|+|+
T Consensus 80 ~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~-------~~~~~r-------i~~~~gd~~~~~p~~D~~~ 144 (244)
T d1fp1d2 80 EGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIEN-------APPLSG-------IEHVGGDMFASVPQGDAMI 144 (244)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTT-------CCCCTT-------EEEEECCTTTCCCCEEEEE
T ss_pred cCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecc-hhhhhc-------cCCCCC-------eEEecCCcccccccceEEE
Confidence 34679999999999999999988 678999997 444432 222233 3899999877645679999
Q ss_pred EcccccccCcchHHHHHHHHHhccCCeE-EEEEC---CC---hhhHH-HHHHhh-ccCCCCCCccccccCCHHHHHHHHH
Q 020710 225 CLDVLIHYPQSKADGMIAHLASLAEKRL-ILSFA---PK---TFYYD-LLKRVG-ELFPGPSKATRAYLHAEADVERALQ 295 (322)
Q Consensus 225 ~~~~l~~~~~~~~~~~l~~l~~~~~~~~-il~~~---~~---~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~ 295 (322)
+..+||++++++...+|+++++.+++++ ++++. +. ..... ....+. ..+. ...+..++.+|++++++
T Consensus 145 l~~vLh~~~de~~~~iL~~~~~aL~pgg~llI~e~v~~~~~~~~~~~~~~~~~d~~m~~----~~~g~ert~~e~~~ll~ 220 (244)
T d1fp1d2 145 LKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFI----TVGGRERTEKQYEKLSK 220 (244)
T ss_dssp EESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHH----HHSCCCEEHHHHHHHHH
T ss_pred EehhhhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEEecCCCCCchHHHHHHHHHHHHHh----hCCCcCCCHHHHHHHHH
Confidence 9999999999989999999999876555 33322 11 11111 111100 0000 00112347899999999
Q ss_pred HCCCEEEEEee
Q 020710 296 KVGWKIRKRGL 306 (322)
Q Consensus 296 ~aGf~vv~~~~ 306 (322)
++||+.+++..
T Consensus 221 ~AGF~~v~v~~ 231 (244)
T d1fp1d2 221 LSGFSKFQVAC 231 (244)
T ss_dssp HTTCSEEEEEE
T ss_pred HcCCCceEEEe
Confidence 99999988643
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.34 E-value=1.1e-12 Score=107.47 Aligned_cols=83 Identities=30% Similarity=0.435 Sum_probs=67.6
Q ss_pred HHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCC-EEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcc
Q 020710 134 VENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGA-IVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKD 212 (322)
Q Consensus 134 ~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d 212 (322)
...++..+...+...+++|||+|||+|.++..++..|+ +|+|||+++.+++.|+++... ++|+++|
T Consensus 34 a~~~~~~~~~~~dl~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~a~~~ar~N~~~-------------~~~~~~D 100 (197)
T d1ne2a_ 34 AAYFLIEIYNDGNIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCGG-------------VNFMVAD 100 (197)
T ss_dssp HHHHHHHHHHHTSSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCTT-------------SEEEECC
T ss_pred HHHHHHHHHHcCCCCCCEEEEeCCCCcHHHHHHHHcCCCcccccccCHHHHHHHHHcccc-------------ccEEEEe
Confidence 34454444444445789999999999999998888875 699999999999999987642 2899999
Q ss_pred cccCCCCccEEEEcccc
Q 020710 213 LESLDGKYDTVVCLDVL 229 (322)
Q Consensus 213 ~~~~~~~fD~V~~~~~l 229 (322)
+.+++++||+|+++--+
T Consensus 101 ~~~l~~~fD~Vi~NPPf 117 (197)
T d1ne2a_ 101 VSEISGKYDTWIMNPPF 117 (197)
T ss_dssp GGGCCCCEEEEEECCCC
T ss_pred hhhcCCcceEEEeCccc
Confidence 99999999999997544
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.32 E-value=8.7e-12 Score=110.07 Aligned_cols=112 Identities=17% Similarity=0.141 Sum_probs=82.9
Q ss_pred HHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc---CCEEEEEeCCHHHHHHHHHHhHHhhhccCC---CCCCCCCce
Q 020710 135 ENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ---GAIVSASDISAAMVAEARKKAEEELLADNG---GEAPVMPKF 208 (322)
Q Consensus 135 ~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~---~~~~~~~~~ 208 (322)
..++.++.- .++.+|||+|||+|.++..|++. ..+|+++|+++++++.|++++...+..... .-...++.|
T Consensus 88 ~~Il~~l~i---~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~ 164 (324)
T d2b25a1 88 NMILSMMDI---NPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDF 164 (324)
T ss_dssp HHHHHHHTC---CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEE
T ss_pred HHHHHHhCC---CCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeE
Confidence 445555544 58999999999999999999986 458999999999999999999876543211 011234588
Q ss_pred EEcccccC-----CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEE
Q 020710 209 EVKDLESL-----DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSF 256 (322)
Q Consensus 209 ~~~d~~~~-----~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~ 256 (322)
..+|+.+. ++.||.|++ ++|++. .++.++.+++++||.+.+
T Consensus 165 ~~~di~~~~~~~~~~~fD~V~L-----D~p~P~--~~l~~~~~~LKpGG~lv~ 210 (324)
T d2b25a1 165 IHKDISGATEDIKSLTFDAVAL-----DMLNPH--VTLPVFYPHLKHGGVCAV 210 (324)
T ss_dssp EESCTTCCC-------EEEEEE-----CSSSTT--TTHHHHGGGEEEEEEEEE
T ss_pred EecchhhcccccCCCCcceEee-----cCcCHH--HHHHHHHHhccCCCEEEE
Confidence 89998654 568999985 678766 789999998877776543
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.32 E-value=2.9e-12 Score=113.18 Aligned_cols=101 Identities=24% Similarity=0.197 Sum_probs=78.5
Q ss_pred CCCCeEEEECCCcccchHHHHhcCC-EEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC---CCCccE
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQGA-IVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL---DGKYDT 222 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~fD~ 222 (322)
.++++|||||||+|.++..+++.|+ +|+++|.|+.|.. +++.....+..+++ .++.+|+.++ +.+||+
T Consensus 34 ~~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~~-a~~~~~~~~~~~~i-------~~~~~~~~~l~~~~~~~D~ 105 (311)
T d2fyta1 34 FKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQ-AMDIIRLNKLEDTI-------TLIKGKIEEVHLPVEKVDV 105 (311)
T ss_dssp TTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHH-HHHHHHHTTCTTTE-------EEEESCTTTSCCSCSCEEE
T ss_pred CCcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHHH-HHHHHHHhCCCccc-------eEEEeeHHHhcCccccceE
Confidence 3678999999999999999999986 7999999998864 55555665555444 8999998876 579999
Q ss_pred EEEcccccccCcch-HHHHHHHHHhccCCeEEEE
Q 020710 223 VVCLDVLIHYPQSK-ADGMIAHLASLAEKRLILS 255 (322)
Q Consensus 223 V~~~~~l~~~~~~~-~~~~l~~l~~~~~~~~il~ 255 (322)
|++....+++..+. +..++....++++++|++.
T Consensus 106 Ivse~~~~~~~~e~~~~~~~~a~~~~Lkp~G~ii 139 (311)
T d2fyta1 106 IISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVY 139 (311)
T ss_dssp EEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred EEEeeeeeecccccccHHHHHHHHhcCCCCcEEe
Confidence 99987777766543 4567777777777777553
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.32 E-value=2.7e-12 Score=113.63 Aligned_cols=100 Identities=20% Similarity=0.110 Sum_probs=81.0
Q ss_pred CCCeEEEECCCcccchHHHHhcCC-EEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC---CCCccEE
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQGA-IVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL---DGKYDTV 223 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~fD~V 223 (322)
++++|||||||+|.++..+++.|+ +|+|+|.|+. ...+++.....+..+++ .++++|+.++ .++||+|
T Consensus 33 ~~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~-~~~a~~~~~~n~~~~~v-------~~~~~~~~~~~~~~~~~D~i 104 (316)
T d1oria_ 33 KDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSI-SDYAVKIVKANKLDHVV-------TIIKGKVEEVELPVEKVDII 104 (316)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTT-HHHHHHHHHHTTCTTTE-------EEEESCTTTCCCSSSCEEEE
T ss_pred CcCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHH-HhhhhhHHHHhCCcccc-------ceEeccHHHcccccceeEEE
Confidence 478999999999999999999985 6999999975 46777777777776655 8999998886 4789999
Q ss_pred EEcccccccCcc-hHHHHHHHHHhccCCeEEEE
Q 020710 224 VCLDVLIHYPQS-KADGMIAHLASLAEKRLILS 255 (322)
Q Consensus 224 ~~~~~l~~~~~~-~~~~~l~~l~~~~~~~~il~ 255 (322)
++..+.+++..+ .+..++..+.++++++|.+.
T Consensus 105 vs~~~~~~l~~e~~~~~~l~~~~r~Lkp~G~ii 137 (316)
T d1oria_ 105 ISEWMGYCLFYESMLNTVLHARDKWLAPDGLIF 137 (316)
T ss_dssp EECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEE
T ss_pred eeeeeeeeeccHHHHHHHHHHHHhcCCCCeEEE
Confidence 998777666543 36789999999887777653
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.32 E-value=1.7e-11 Score=105.08 Aligned_cols=128 Identities=17% Similarity=0.162 Sum_probs=94.1
Q ss_pred CCCeEEEECCCcccchHHHHhcC-CEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--CCCccEEE
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQG-AIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL--DGKYDTVV 224 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~fD~V~ 224 (322)
++.+|||+|||+|.++..+++.| ++|+++|+|+.+++.+++++..+++.+++ +++++|+.++ .+.||.|+
T Consensus 107 ~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v-------~~~~~D~~~~~~~~~~D~Ii 179 (260)
T d2frna1 107 PDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRM-------SAYNMDNRDFPGENIADRIL 179 (260)
T ss_dssp TTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTE-------EEECSCTTTCCCCSCEEEEE
T ss_pred CccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHHHHHHHHHhCCCceE-------EEEEcchHHhccCCCCCEEE
Confidence 58899999999999999999886 58999999999999999999998887765 8999999877 67899998
Q ss_pred EcccccccCcchHHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCCCCCccccccCCHHHHHHHHHHCCCEEEEE
Q 020710 225 CLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQKVGWKIRKR 304 (322)
Q Consensus 225 ~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~vv~~ 304 (322)
+.. .+.. ..++....+++++|+++.+..... .+.. .-...+.+.++.++.||++...
T Consensus 180 ~~~----p~~~--~~~l~~a~~~l~~gG~lh~~~~~~--------~~~~---------~~~~~e~~~~~~~~~g~~v~~~ 236 (260)
T d2frna1 180 MGY----VVRT--HEFIPKALSIAKDGAIIHYHNTVP--------EKLM---------PREPFETFKRITKEYGYDVEKL 236 (260)
T ss_dssp ECC----CSSG--GGGHHHHHHHEEEEEEEEEEEEEE--------GGGT---------TTTTHHHHHHHHHHTTCEEEEE
T ss_pred ECC----CCch--HHHHHHHHhhcCCCCEEEEEeccc--------cccc---------hhhHHHHHHHHHHHcCCceEEE
Confidence 742 2222 256666666677777764311000 0000 0123567888999999987543
Q ss_pred e
Q 020710 305 G 305 (322)
Q Consensus 305 ~ 305 (322)
.
T Consensus 237 ~ 237 (260)
T d2frna1 237 N 237 (260)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.32 E-value=4.6e-12 Score=104.77 Aligned_cols=101 Identities=18% Similarity=0.136 Sum_probs=79.6
Q ss_pred CCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-----CCCcc
Q 020710 149 GIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-----DGKYD 221 (322)
Q Consensus 149 ~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-----~~~fD 221 (322)
+..|||||||+|.++..+|+. ...++|+|+++.++..|.++..+.++.| +.+..+|+..+ ++++|
T Consensus 32 ~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~N--------i~~~~~da~~l~~~~~~~~~~ 103 (204)
T d1yzha1 32 NPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPN--------IKLLWVDGSDLTDYFEDGEID 103 (204)
T ss_dssp CCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSS--------EEEEECCSSCGGGTSCTTCCS
T ss_pred CCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhcccc--------ceeeecCHHHHhhhccCCcee
Confidence 557999999999999999988 6789999999999999999998887654 48999998765 68899
Q ss_pred EEEEcccccccCcch------HHHHHHHHHhccCCeEEEEEC
Q 020710 222 TVVCLDVLIHYPQSK------ADGMIAHLASLAEKRLILSFA 257 (322)
Q Consensus 222 ~V~~~~~l~~~~~~~------~~~~l~~l~~~~~~~~il~~~ 257 (322)
.|++...-.+..... ...+++.+.+++++||.+.+.
T Consensus 104 ~i~i~fPdPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~ 145 (204)
T d1yzha1 104 RLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFK 145 (204)
T ss_dssp EEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEE
T ss_pred hhcccccccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEE
Confidence 998655432222111 158999999988777766553
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.30 E-value=4.4e-12 Score=105.53 Aligned_cols=92 Identities=16% Similarity=0.208 Sum_probs=79.3
Q ss_pred hHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc-CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEE
Q 020710 132 KTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ-GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEV 210 (322)
Q Consensus 132 ~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~ 210 (322)
.++.++++.+... ++.+|||||||+|+.+..+++. |.+|+++|.++.+++.+++++.+.+..+ +.+.+
T Consensus 65 ~~~a~ml~~L~l~---~g~~VLeIGsGsGY~taila~l~g~~V~~ie~~~~l~~~a~~~l~~~g~~n--------v~~~~ 133 (215)
T d1jg1a_ 65 HMVAIMLEIANLK---PGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKN--------VHVIL 133 (215)
T ss_dssp HHHHHHHHHHTCC---TTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCS--------EEEEE
T ss_pred hhHHHHHHhhccC---ccceEEEecCCCChhHHHHHHhhCceeEEEeccHHHHHHHHHHHHHcCCce--------eEEEE
Confidence 4557777777654 7899999999999999999987 7789999999999999999999887654 48999
Q ss_pred cccccC---CCCccEEEEcccccccCc
Q 020710 211 KDLESL---DGKYDTVVCLDVLIHYPQ 234 (322)
Q Consensus 211 ~d~~~~---~~~fD~V~~~~~l~~~~~ 234 (322)
+|.... .++||.|++..++.++|+
T Consensus 134 gd~~~g~~~~~pfD~Iiv~~a~~~ip~ 160 (215)
T d1jg1a_ 134 GDGSKGFPPKAPYDVIIVTAGAPKIPE 160 (215)
T ss_dssp SCGGGCCGGGCCEEEEEECSBBSSCCH
T ss_pred CccccCCcccCcceeEEeecccccCCH
Confidence 998764 689999999999998876
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=99.30 E-value=7.5e-12 Score=100.70 Aligned_cols=117 Identities=11% Similarity=0.108 Sum_probs=82.3
Q ss_pred hcCchhHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCC
Q 020710 127 RLGHSKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMP 206 (322)
Q Consensus 127 ~~~~~~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~ 206 (322)
|+......+.+.++|... ..++.+|||+|||+|.++..++.+|++++++|.|+.+++.+++++...+..+
T Consensus 21 Rpt~~~v~e~lf~~l~~~-~~~g~~vLDl~~G~G~~~i~a~~~ga~vv~vD~~~~a~~~~~~N~~~~~~~~--------- 90 (171)
T d1ws6a1 21 RPSPVRLRKALFDYLRLR-YPRRGRFLDPFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLKENVRRTGLGA--------- 90 (171)
T ss_dssp CCCCHHHHHHHHHHHHHH-CTTCCEEEEETCSSCHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHTCCC---------
T ss_pred CCCcHHHHHHHHHHhhcc-ccCCCeEEEeccccchhhhhhhhccchhhhcccCHHHHhhhhHHHHhhcccc---------
Confidence 444444556677777753 2467899999999999999999999999999999999999999999887765
Q ss_pred ceEEcccccC-------CCCccEEEEcccccccCcchHHHHHHHHH--hccCCeEEEEEC
Q 020710 207 KFEVKDLESL-------DGKYDTVVCLDVLIHYPQSKADGMIAHLA--SLAEKRLILSFA 257 (322)
Q Consensus 207 ~~~~~d~~~~-------~~~fD~V~~~~~l~~~~~~~~~~~l~~l~--~~~~~~~il~~~ 257 (322)
++...|.... ..+||+|++.--+. ... ...+..+. .++.+++++.+.
T Consensus 91 ~v~~~~~d~~~~~~~~~~~~fD~If~DPPY~-~~~---~~~l~~l~~~~ll~~~g~ivie 146 (171)
T d1ws6a1 91 RVVALPVEVFLPEAKAQGERFTVAFMAPPYA-MDL---AALFGELLASGLVEAGGLYVLQ 146 (171)
T ss_dssp EEECSCHHHHHHHHHHTTCCEEEEEECCCTT-SCT---THHHHHHHHHTCEEEEEEEEEE
T ss_pred ceeeeehhcccccccccCCccceeEEccccc-cCH---HHHHHHHHHcCCcCCCeEEEEE
Confidence 4555554321 57899999865432 221 23333332 356666666553
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.30 E-value=2.3e-12 Score=114.60 Aligned_cols=118 Identities=12% Similarity=0.052 Sum_probs=81.8
Q ss_pred HHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc-CC-EEEEEeCCHHHHHHHHHHhHHhhhccC-CCCCCCCCceE
Q 020710 133 TVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ-GA-IVSASDISAAMVAEARKKAEEELLADN-GGEAPVMPKFE 209 (322)
Q Consensus 133 ~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~-~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~-~~~~~~~~~~~ 209 (322)
.+..+++.+. ..++.+|||||||+|.++..+++. ++ +++|||+|+.|++.|+++..+.....+ .+....+++|+
T Consensus 139 ~~~~~~~~~~---l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~ 215 (328)
T d1nw3a_ 139 LVAQMIDEIK---MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLE 215 (328)
T ss_dssp HHHHHHHHSC---CCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEE
T ss_pred HHHHHHHHcC---CCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEE
Confidence 3344444443 457899999999999999999876 55 699999999999999887665322100 01122335899
Q ss_pred EcccccC---CC--CccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEE
Q 020710 210 VKDLESL---DG--KYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSF 256 (322)
Q Consensus 210 ~~d~~~~---~~--~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~ 256 (322)
++|+.+. +. ..|+|+++. +.|.++ +...++++.+.+++|+.+++
T Consensus 216 ~gd~~~~~~~~~~~~advi~~~~-~~f~~~--~~~~l~e~~r~LKpGg~iv~ 264 (328)
T d1nw3a_ 216 RGDFLSEEWRERIANTSVIFVNN-FAFGPE--VDHQLKERFANMKEGGRIVS 264 (328)
T ss_dssp ECCTTSHHHHHHHHHCSEEEECC-TTTCHH--HHHHHHHHHTTCCTTCEEEE
T ss_pred ECcccccccccccCcceEEEEcc-eecchH--HHHHHHHHHHhCCCCcEEEE
Confidence 9999876 22 246777654 456665 66888999988776665544
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.23 E-value=1.3e-10 Score=98.92 Aligned_cols=114 Identities=17% Similarity=0.140 Sum_probs=77.3
Q ss_pred HhcCCCcccchhhhhhcCchhHHHHHH-HHhhhcC--CCCCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHH
Q 020710 112 IYGETDDVNRVQLDIRLGHSKTVENTM-QMLNDEG--SLKGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEA 186 (322)
Q Consensus 112 ~y~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~--~~~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a 186 (322)
+|+...++++....++...+..+...+ +++.... ..+..++||+|||+|..+..|+.+ +++++|+|+|+++++.|
T Consensus 22 f~gl~~~v~~~~LiPr~~~r~~~~~~i~~l~~~~~~~~~~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A 101 (250)
T d2h00a1 22 DFGLSIDIPLERLIPTVPLRLNYIHWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYA 101 (250)
T ss_dssp HHCCCCCCCTTSCCCCHHHHHHHHHHHHHHHCCCCGGGCCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHH
T ss_pred HcCceEEeCCCeecCCCCCHHHHHHHHHHHhhhhccCccccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHH
Confidence 344445555555555443333333333 3332211 124568999999999999999887 89999999999999999
Q ss_pred HHHhHHhhhccCCCCCCCCCceEEcccccC---------CCCccEEEEccccccc
Q 020710 187 RKKAEEELLADNGGEAPVMPKFEVKDLESL---------DGKYDTVVCLDVLIHY 232 (322)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---------~~~fD~V~~~~~l~~~ 232 (322)
+++....++.+++ .+...+.... +++||+|+|+--++.-
T Consensus 102 ~~N~~~n~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~fD~ivsNPPY~~~ 149 (250)
T d2h00a1 102 KKNVEQNNLSDLI-------KVVKVPQKTLLMDALKEESEIIYDFCMCNPPFFAN 149 (250)
T ss_dssp HHHHHHTTCTTTE-------EEEECCTTCSSTTTSTTCCSCCBSEEEECCCCC--
T ss_pred HHHHHHhCCCcce-------eeeeeccHHhhhhhhhhcccCceeEEEecCccccc
Confidence 9999998887754 5555443221 4689999999876543
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.23 E-value=9.3e-12 Score=98.22 Aligned_cols=111 Identities=17% Similarity=0.172 Sum_probs=83.8
Q ss_pred HHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCC-EEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEccc
Q 020710 135 ENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGA-IVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDL 213 (322)
Q Consensus 135 ~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~ 213 (322)
+.+.++|... .++.+|||+|||+|.++..++.+|+ +|+++|.++.+++.+++++...+..+++ +++++|+
T Consensus 3 e~~fn~l~~~--~~g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~-------~ii~~D~ 73 (152)
T d2esra1 3 GAIFNMIGPY--FNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRF-------TLLKMEA 73 (152)
T ss_dssp HHHHHHHCSC--CCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGE-------EEECSCH
T ss_pred HHHHHHHHhh--CCCCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhhhhhhhcccccch-------hhhcccc
Confidence 4455666653 4688999999999999999988876 7999999999999999999988877655 8899997
Q ss_pred ccC----CCCccEEEEcccccccCcchHHHHHHHHHh--ccCCeEEEEEC
Q 020710 214 ESL----DGKYDTVVCLDVLIHYPQSKADGMIAHLAS--LAEKRLILSFA 257 (322)
Q Consensus 214 ~~~----~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~--~~~~~~il~~~ 257 (322)
... .++||+|++..-.. .......+..+.. ++++++++.+.
T Consensus 74 ~~~l~~~~~~fDiIf~DPPy~---~~~~~~~l~~i~~~~~L~~~g~iiiE 120 (152)
T d2esra1 74 ERAIDCLTGRFDLVFLDPPYA---KETIVATIEALAAKNLLSEQVMVVCE 120 (152)
T ss_dssp HHHHHHBCSCEEEEEECCSSH---HHHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred cccccccccccceeEechhhc---cchHHHHHHHHHHCCCcCCCeEEEEE
Confidence 664 78999999753321 1224566666654 45666666553
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=99.23 E-value=8.1e-11 Score=105.72 Aligned_cols=116 Identities=25% Similarity=0.355 Sum_probs=90.5
Q ss_pred hhHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEE
Q 020710 131 SKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEV 210 (322)
Q Consensus 131 ~~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~ 210 (322)
+.+++.+++++... ++.+|||+.||+|.++..|++.+.+|+|+|+++.+++.|++++..+++.+ +.|+.
T Consensus 198 e~l~~~v~~~~~~~---~~~~vlDLycG~G~fsl~La~~~~~V~gvE~~~~ai~~A~~na~~n~i~n--------~~~~~ 266 (358)
T d1uwva2 198 QKMVARALEWLDVQ---PEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQN--------VTFYH 266 (358)
T ss_dssp HHHHHHHHHHHTCC---TTCEEEEESCTTTTTHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCS--------EEEEE
T ss_pred hHHHHHHHHhhccC---CCceEEEecccccccchhccccccEEEeccCcHHHHHHHHHhHHhccccc--------ceeee
Confidence 34555666666543 57899999999999999999999999999999999999999998887754 48999
Q ss_pred cccccC-------CCCccEEEEcccccccCcchHHHHHHHHHhccCC-eEEEEECCChhh
Q 020710 211 KDLESL-------DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEK-RLILSFAPKTFY 262 (322)
Q Consensus 211 ~d~~~~-------~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~-~~il~~~~~~~~ 262 (322)
+|.++. ...||+|+. .-|...+.+.++.+.+.... -++++|+|.++.
T Consensus 267 ~~~~~~~~~~~~~~~~~d~vil-----DPPR~G~~~~~~~l~~~~~~~ivYVSCnp~Tla 321 (358)
T d1uwva2 267 ENLEEDVTKQPWAKNGFDKVLL-----DPARAGAAGVMQQIIKLEPIRIVYVSCNPATLA 321 (358)
T ss_dssp CCTTSCCSSSGGGTTCCSEEEE-----CCCTTCCHHHHHHHHHHCCSEEEEEESCHHHHH
T ss_pred cchhhhhhhhhhhhccCceEEe-----CCCCccHHHHHHHHHHcCCCEEEEEeCCHHHHH
Confidence 987663 467999984 56665566778888776444 446778877754
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=99.22 E-value=1.8e-11 Score=108.14 Aligned_cols=102 Identities=22% Similarity=0.120 Sum_probs=78.4
Q ss_pred CCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-------CCCc
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------DGKY 220 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------~~~f 220 (322)
++.+|||++||+|.++..++..+.+|+++|+|+.+++.+++++..+++.+ ++|+++|+.+. .++|
T Consensus 145 ~g~rVLDl~~gtG~~s~~~a~g~~~V~~vD~s~~al~~a~~n~~~ngl~~--------~~~i~~d~~~~~~~~~~~~~~f 216 (318)
T d1wxxa2 145 RGERALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEENARLNGLGN--------VRVLEANAFDLLRRLEKEGERF 216 (318)
T ss_dssp CEEEEEEETCTTTHHHHHHHHHEEEEEEEESCHHHHHHHHHHHHHTTCTT--------EEEEESCHHHHHHHHHHTTCCE
T ss_pred CCCeeeccCCCCcHHHHHHHhcCCcEEeecchHHHHHHHHHHHHHcCCCC--------cceeeccHHHHhhhhHhhhcCC
Confidence 57899999999999999998777889999999999999999999888753 38999997653 5789
Q ss_pred cEEEEcccccccCcch-------HHHHHHHHHhccCCeEEEEEC
Q 020710 221 DTVVCLDVLIHYPQSK-------ADGMIAHLASLAEKRLILSFA 257 (322)
Q Consensus 221 D~V~~~~~l~~~~~~~-------~~~~l~~l~~~~~~~~il~~~ 257 (322)
|+|++.--........ ...+++.+.+++++||++.+.
T Consensus 217 D~Vi~DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~ 260 (318)
T d1wxxa2 217 DLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATA 260 (318)
T ss_dssp EEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred CEEEEcCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 9999864321111111 235666777777777766553
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.21 E-value=2.5e-11 Score=109.87 Aligned_cols=117 Identities=14% Similarity=0.076 Sum_probs=77.3
Q ss_pred HHHHhhhcCCCCCCeEEEECCCcccchHHHHhc-CC-EEEEEeCCHHHHHHHHHHhHHhhhccCC-CCCCCCCce-EEcc
Q 020710 137 TMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ-GA-IVSASDISAAMVAEARKKAEEELLADNG-GEAPVMPKF-EVKD 212 (322)
Q Consensus 137 ~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~-~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~-~~~~~~~~~-~~~d 212 (322)
+.+++...+..++.+|||||||+|..+..++.. ++ +++|||+|+.|++.|+++..+.+...+. +.......+ ..++
T Consensus 205 i~~Il~~l~Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~~ 284 (406)
T d1u2za_ 205 LSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKS 284 (406)
T ss_dssp HHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSC
T ss_pred HHHHHHHhCCCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeeec
Confidence 334444444458899999999999999999987 65 7999999999999999988765432100 000000011 2233
Q ss_pred cccC------CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEE
Q 020710 213 LESL------DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSF 256 (322)
Q Consensus 213 ~~~~------~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~ 256 (322)
.... -..+|+|++.. ++|.++ +...++++.+.+++|+.|+.
T Consensus 285 f~~~~~~d~~~~~adVV~inn-~~f~~~--l~~~L~ei~r~LKPGGrIVs 331 (406)
T d1u2za_ 285 FVDNNRVAELIPQCDVILVNN-FLFDED--LNKKVEKILQTAKVGCKIIS 331 (406)
T ss_dssp STTCHHHHHHGGGCSEEEECC-TTCCHH--HHHHHHHHHTTCCTTCEEEE
T ss_pred hhhccccccccccceEEEEec-ccCchH--HHHHHHHHHHhcCCCcEEEE
Confidence 3221 24578888765 345555 77999999998877765544
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.21 E-value=5.3e-11 Score=105.44 Aligned_cols=103 Identities=25% Similarity=0.113 Sum_probs=79.0
Q ss_pred CCCCeEEEECCCcccchHHHHhcCC-EEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-------CC
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQGA-IVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------DG 218 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------~~ 218 (322)
.++.+|||+|||+|.++..++..|+ +|+++|+|+.+++.+++++..+++.+++ +|+++|+.+. ..
T Consensus 144 ~~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~-------~~~~~d~~~~~~~~~~~~~ 216 (324)
T d2as0a2 144 QPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRM-------KFIVGSAFEEMEKLQKKGE 216 (324)
T ss_dssp CTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGE-------EEEESCHHHHHHHHHHTTC
T ss_pred CCCCeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHHHHHHHcCCCccc-------eeeechhhhhhHHHHhccC
Confidence 3578999999999999999999876 7999999999999999999998886554 8999997653 57
Q ss_pred CccEEEEcccccccCcch-------HHHHHHHHHhccCCeEEEEE
Q 020710 219 KYDTVVCLDVLIHYPQSK-------ADGMIAHLASLAEKRLILSF 256 (322)
Q Consensus 219 ~fD~V~~~~~l~~~~~~~-------~~~~l~~l~~~~~~~~il~~ 256 (322)
+||+|++..-........ ...++....+++++||++.+
T Consensus 217 ~fD~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~ 261 (324)
T d2as0a2 217 KFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVT 261 (324)
T ss_dssp CEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred CCCchhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEE
Confidence 899999854321111111 23466666677777776654
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.20 E-value=2.7e-11 Score=101.42 Aligned_cols=98 Identities=14% Similarity=0.145 Sum_probs=74.1
Q ss_pred HHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc----C----CEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCC
Q 020710 133 TVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ----G----AIVSASDISAAMVAEARKKAEEELLADNGGEAPV 204 (322)
Q Consensus 133 ~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~----~----~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~ 204 (322)
+..++++.|... ..++.+|||||||+|+++..+++. | .+|+++|+++++++.|+++........ ....
T Consensus 66 ~~a~~l~~L~~~-l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~---~~~~ 141 (223)
T d1r18a_ 66 MHAFALEYLRDH-LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSM---LDSG 141 (223)
T ss_dssp HHHHHHHHTTTT-CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHH---HHHT
T ss_pred hHHHHHHHHhhc-cCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhh---cCcc
Confidence 556777777422 347889999999999999888765 3 489999999999999998875543210 0011
Q ss_pred CCceEEcccccC---CCCccEEEEcccccccCc
Q 020710 205 MPKFEVKDLESL---DGKYDTVVCLDVLIHYPQ 234 (322)
Q Consensus 205 ~~~~~~~d~~~~---~~~fD~V~~~~~l~~~~~ 234 (322)
++.+..+|..+. .++||.|++..++.++|+
T Consensus 142 nv~~~~~d~~~~~~~~~~fD~Iiv~~a~~~~p~ 174 (223)
T d1r18a_ 142 QLLIVEGDGRKGYPPNAPYNAIHVGAAAPDTPT 174 (223)
T ss_dssp SEEEEESCGGGCCGGGCSEEEEEECSCBSSCCH
T ss_pred EEEEEecccccccccccceeeEEEEeechhchH
Confidence 248899998664 578999999999988875
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.19 E-value=1.2e-11 Score=105.15 Aligned_cols=141 Identities=12% Similarity=0.001 Sum_probs=94.8
Q ss_pred CCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccCCCCccEEEE
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESLDGKYDTVVC 225 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~fD~V~~ 225 (322)
...+|||||||+|.++..++++ +.+++..|+.+ .++.+ ... .++.+..+|+.+.....|++++
T Consensus 81 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi~~~-------~~~-------~r~~~~~~d~~~~~P~ad~~~l 145 (243)
T d1kyza2 81 GLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPH-VIEDA-------PSY-------PGVEHVGGDMFVSIPKADAVFM 145 (243)
T ss_dssp SCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTT-TTTTC-------CCC-------TTEEEEECCTTTCCCCCSCEEC
T ss_pred CCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHH-hhhhc-------ccC-------CceEEecccccccCCCcceEEE
Confidence 3578999999999999999998 77999999854 33221 111 2348999998766445789999
Q ss_pred cccccccCcchHHHHHHHHHhccCCeE-EEEEC---C---Chh-hHHH--HHHhhccCCCCCCccccccCCHHHHHHHHH
Q 020710 226 LDVLIHYPQSKADGMIAHLASLAEKRL-ILSFA---P---KTF-YYDL--LKRVGELFPGPSKATRAYLHAEADVERALQ 295 (322)
Q Consensus 226 ~~~l~~~~~~~~~~~l~~l~~~~~~~~-il~~~---~---~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 295 (322)
..++|+++++....+|+++++.+++++ +++.. + ... .... .-.+.-+... ..+.-++.++++++++
T Consensus 146 ~~vlh~~~d~~~~~iL~~~~~al~pgg~~li~d~~~~~~~~~~~~~~~~~~~d~~ml~~~----~~g~ert~~e~~~ll~ 221 (243)
T d1kyza2 146 KWICHDWSDEHCLKFLKNCYEALPDNGKVIVAECILPVAPDSSLATKGVVHIDVIMLAHN----PGGKERTQKEFEDLAK 221 (243)
T ss_dssp SSSSTTSCHHHHHHHHHHHHHHCCSSSCEEEEECEECSSCCCCHHHHHHHHHHHHHHHHC----SSCCCEEHHHHHHHHH
T ss_pred EEEeecCCHHHHHHHHHHHHHhcCCCceEEEEEEEecCCCCCchhhHHHHHHHHHHHhhC----CCCCcCCHHHHHHHHH
Confidence 999999999888999999999765443 33321 1 111 1110 1111101000 0112347899999999
Q ss_pred HCCCEEEEEeee
Q 020710 296 KVGWKIRKRGLI 307 (322)
Q Consensus 296 ~aGf~vv~~~~~ 307 (322)
++||+++++...
T Consensus 222 ~AGf~~vkv~~~ 233 (243)
T d1kyza2 222 GAGFQGFKVHCN 233 (243)
T ss_dssp HHCCSCEEEEEE
T ss_pred HcCCCcEEEEEe
Confidence 999999987544
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=99.11 E-value=1e-10 Score=100.38 Aligned_cols=107 Identities=23% Similarity=0.225 Sum_probs=89.0
Q ss_pred HhcCCCcccchhhhhhcCchhHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc-CCEEEEEeCCHHHHHHHHHHh
Q 020710 112 IYGETDDVNRVQLDIRLGHSKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ-GAIVSASDISAAMVAEARKKA 190 (322)
Q Consensus 112 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~-~~~v~gvD~s~~~l~~a~~~~ 190 (322)
+|+....++.....+|+..+.+++.+++.+... ...+|||+|||+|..+..+++. .++|+++|+|+.+++.|++++
T Consensus 77 F~~~~f~v~~~vlIPRpeTE~lv~~~~~~~~~~---~~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al~~A~~Na 153 (271)
T d1nv8a_ 77 FMGLSFLVEEGVFVPRPETEELVELALELIRKY---GIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNA 153 (271)
T ss_dssp ETTEEEECCTTSCCCCTTHHHHHHHHHHHHHHH---TCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHH
T ss_pred EeeeEEEEecCccCchhhhhhhhhhhhhhhccc---cccEEEEeeeeeehhhhhhhhcccceeeechhhhhHHHHHHHHH
Confidence 445555677778889999999999999888776 4568999999999999888866 678999999999999999999
Q ss_pred HHhhhccCCCCCCCCCceEEcccccC----CCCccEEEEccc
Q 020710 191 EEELLADNGGEAPVMPKFEVKDLESL----DGKYDTVVCLDV 228 (322)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~d~~~~----~~~fD~V~~~~~ 228 (322)
...+..+++ .+...|+.+. .++||+|+++--
T Consensus 154 ~~~~~~~~~-------~i~~~~~~~~~~~~~~~fDlIVsNPP 188 (271)
T d1nv8a_ 154 ERHGVSDRF-------FVRKGEFLEPFKEKFASIEMILSNPP 188 (271)
T ss_dssp HHTTCTTSE-------EEEESSTTGGGGGGTTTCCEEEECCC
T ss_pred HHcCCCcee-------EEeecccccccccccCcccEEEEccc
Confidence 998887654 6778887664 479999999843
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.10 E-value=1.7e-10 Score=94.47 Aligned_cols=112 Identities=22% Similarity=0.284 Sum_probs=76.0
Q ss_pred CCCeEEEECCCcccch----HHHHhc------CCEEEEEeCCHHHHHHHHHHhHHhhh------------------ccCC
Q 020710 148 KGIAVCDAGCGTGSLA----IPLAKQ------GAIVSASDISAAMVAEARKKAEEELL------------------ADNG 199 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~----~~la~~------~~~v~gvD~s~~~l~~a~~~~~~~~~------------------~~~~ 199 (322)
++.+|+++|||+|.-. ..+.+. ..+++|+|+|+.+++.|++..-.... ....
T Consensus 24 ~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~~ 103 (193)
T d1af7a2 24 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 103 (193)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCccc
Confidence 4679999999999843 333332 23699999999999999743210000 0000
Q ss_pred C-----CCCCCCceEEcccccC----CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEECCC
Q 020710 200 G-----EAPVMPKFEVKDLESL----DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPK 259 (322)
Q Consensus 200 ~-----~~~~~~~~~~~d~~~~----~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~ 259 (322)
. .....+.|...+.... .+.||+|+|.++|.+++++...++++.+++.+++||++.+.+.
T Consensus 104 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~lG~s 172 (193)
T d1af7a2 104 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAGHS 172 (193)
T ss_dssp EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEECTT
T ss_pred eeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEEEecC
Confidence 0 0000123444444332 4789999999999999998888999999999999998887654
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.10 E-value=1.9e-10 Score=100.21 Aligned_cols=83 Identities=17% Similarity=0.121 Sum_probs=67.9
Q ss_pred HHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEccccc
Q 020710 136 NTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLES 215 (322)
Q Consensus 136 ~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 215 (322)
.+.+.+... .++.+|||++||+|.++..++..|++|++||.|+.+++.|++++..+++.+ .+++|+++|+.+
T Consensus 122 ~~~~~~~~~--~~~~rVLdlf~~tG~~sl~aa~~GA~V~~VD~s~~al~~a~~N~~ln~~~~------~~~~~i~~D~~~ 193 (309)
T d2igta1 122 WLKNAVETA--DRPLKVLNLFGYTGVASLVAAAAGAEVTHVDASKKAIGWAKENQVLAGLEQ------APIRWICEDAMK 193 (309)
T ss_dssp HHHHHHHHS--SSCCEEEEETCTTCHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHTCTT------SCEEEECSCHHH
T ss_pred HHHHHHhhc--cCCCeEEEecCCCcHHHHHHHhCCCeEEEEeChHHHHHHHHHhhhhhcccC------CcEEEEeCCHHH
Confidence 344445433 357899999999999999999999999999999999999999998877654 123899999876
Q ss_pred C-------CCCccEEEEc
Q 020710 216 L-------DGKYDTVVCL 226 (322)
Q Consensus 216 ~-------~~~fD~V~~~ 226 (322)
. ..+||+|++.
T Consensus 194 ~l~~~~~~~~~fD~IilD 211 (309)
T d2igta1 194 FIQREERRGSTYDIILTD 211 (309)
T ss_dssp HHHHHHHHTCCBSEEEEC
T ss_pred hHHHHhhcCCCCCEEEEC
Confidence 4 5789999984
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=99.09 E-value=2.9e-10 Score=100.03 Aligned_cols=104 Identities=14% Similarity=0.080 Sum_probs=77.7
Q ss_pred CCCeEEEECCCcccchHHHHhcCC-EEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-------CCC
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQGA-IVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------DGK 219 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------~~~ 219 (322)
++.+|||++||+|.++..++..|+ +|++||+|+.+++.+++++..+++.. .+++|+++|+.+. ..+
T Consensus 144 ~g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~------~~~~~i~~d~~~~l~~~~~~~~~ 217 (317)
T d2b78a2 144 AGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDM------ANHQLVVMDVFDYFKYARRHHLT 217 (317)
T ss_dssp BTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCC------TTEEEEESCHHHHHHHHHHTTCC
T ss_pred CCCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHHHHhcccC------cceEEEEccHHHHHHHHHhhcCC
Confidence 578999999999999999888877 69999999999999999998877642 2238999998653 468
Q ss_pred ccEEEEcccc-----cccCc--chHHHHHHHHHhccCCeEEEEEC
Q 020710 220 YDTVVCLDVL-----IHYPQ--SKADGMIAHLASLAEKRLILSFA 257 (322)
Q Consensus 220 fD~V~~~~~l-----~~~~~--~~~~~~l~~l~~~~~~~~il~~~ 257 (322)
||+|++.--- ..... ....++++...+++++||++.+.
T Consensus 218 fD~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~ 262 (317)
T d2b78a2 218 YDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIAS 262 (317)
T ss_dssp EEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred CCEEEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 9999984221 00111 11456777777877777766553
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=99.06 E-value=4.4e-10 Score=90.99 Aligned_cols=121 Identities=14% Similarity=0.143 Sum_probs=91.3
Q ss_pred hhhcCchhHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCC-EEEEEeCCHHHHHHHHHHhHHhhhccCCCCCC
Q 020710 125 DIRLGHSKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGA-IVSASDISAAMVAEARKKAEEELLADNGGEAP 203 (322)
Q Consensus 125 ~~~~~~~~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~ 203 (322)
..|+......+.+.++|... .++.+|||++||+|.++...+.+|+ +|++||.++.+++.+++++...+..+++
T Consensus 20 ~~RPt~~~vrealFn~l~~~--~~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~~~~N~~~~~~~~~~---- 93 (182)
T d2fhpa1 20 NTRPTTDKVKESIFNMIGPY--FDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKF---- 93 (182)
T ss_dssp SSCCCCHHHHHHHHHHHCSC--CSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGE----
T ss_pred CcCcCcHHHHHHHHHHHHHh--cCCCEEEEcccccccccceeeecchhHHHHHHHHHHHHHHHHHHhhhhhccccc----
Confidence 34555556667788888754 4688999999999999999999987 5999999999999999999877765544
Q ss_pred CCCceEEcccccC-------CCCccEEEEcccccccCcchHHHHHHHHHh--ccCCeEEEEEC
Q 020710 204 VMPKFEVKDLESL-------DGKYDTVVCLDVLIHYPQSKADGMIAHLAS--LAEKRLILSFA 257 (322)
Q Consensus 204 ~~~~~~~~d~~~~-------~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~--~~~~~~il~~~ 257 (322)
+++++|+... ..+||+|++.--.. .......+..+.+ ++.+++++.+.
T Consensus 94 ---~i~~~D~~~~l~~~~~~~~~fDlIflDPPY~---~~~~~~~l~~i~~~~~L~~~giIi~E 150 (182)
T d2fhpa1 94 ---EVRKMDANRALEQFYEEKLQFDLVLLDPPYA---KQEIVSQLEKMLERQLLTNEAVIVCE 150 (182)
T ss_dssp ---EEEESCHHHHHHHHHHTTCCEEEEEECCCGG---GCCHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred ---ccccccchhhhhhhcccCCCcceEEechhhh---hhHHHHHHHHHHHCCCCCCCEEEEEE
Confidence 8899997653 45899999765431 1225567777654 46666666654
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.06 E-value=3.9e-10 Score=93.89 Aligned_cols=111 Identities=16% Similarity=0.113 Sum_probs=87.5
Q ss_pred HHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc---CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEc
Q 020710 135 ENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ---GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVK 211 (322)
Q Consensus 135 ~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (322)
..++..+... .+.++|||||||+|+.+.++++. +.+++.+|++++..+.|++.+...+..+++ ++..+
T Consensus 48 g~lL~~L~~~--~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i-------~~~~G 118 (219)
T d2avda1 48 AQLLANLARL--IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKI-------DLRLK 118 (219)
T ss_dssp HHHHHHHHHH--TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTE-------EEEES
T ss_pred HHHHHHHHHc--cCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceE-------EEEEe
Confidence 4455555443 35789999999999999999976 679999999999999999999998887765 89999
Q ss_pred ccccC---------CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEECCC
Q 020710 212 DLESL---------DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPK 259 (322)
Q Consensus 212 d~~~~---------~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~ 259 (322)
|+.+. .++||+|+.. | ........++.+.+++++|+++.+..-
T Consensus 119 da~e~l~~~~~~~~~~~fD~ifiD----~-dk~~y~~~~~~~~~lL~~GGvii~Dn~ 170 (219)
T d2avda1 119 PALETLDELLAAGEAGTFDVAVVD----A-DKENCSAYYERCLQLLRPGGILAVLRV 170 (219)
T ss_dssp CHHHHHHHHHHTTCTTCEEEEEEC----S-CSTTHHHHHHHHHHHEEEEEEEEEECC
T ss_pred ehhhcchhhhhhcccCCccEEEEe----C-CHHHHHHHHHHHHHHhcCCcEEEEeCC
Confidence 97542 5789999973 2 223366778888888888888877543
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.01 E-value=4.7e-10 Score=91.44 Aligned_cols=114 Identities=12% Similarity=0.096 Sum_probs=85.6
Q ss_pred hhHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCce
Q 020710 131 SKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKF 208 (322)
Q Consensus 131 ~~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~ 208 (322)
..+++++++++... ++..+||++||+|.++..+++. +++|+|+|.++.|++.+++++...+... .+
T Consensus 9 pVll~evi~~l~~~---~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~~r~---------~~ 76 (192)
T d1m6ya2 9 PVMVREVIEFLKPE---DEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRV---------SL 76 (192)
T ss_dssp CTTHHHHHHHHCCC---TTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTE---------EE
T ss_pred chHHHHHHHhhCCC---CCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhccccccc---------cc
Confidence 35678889998764 7889999999999999999987 6799999999999999999987654322 78
Q ss_pred EEcccccC--------CCCccEEEEcccccc--cCc-----chHHHHHHHHHhccCCeEEEEE
Q 020710 209 EVKDLESL--------DGKYDTVVCLDVLIH--YPQ-----SKADGMIAHLASLAEKRLILSF 256 (322)
Q Consensus 209 ~~~d~~~~--------~~~fD~V~~~~~l~~--~~~-----~~~~~~l~~l~~~~~~~~il~~ 256 (322)
+.+++.++ .++||.|+.-..+.. +.+ ......+....+++++++.+.+
T Consensus 77 ~~~~f~~~~~~~~~~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~i 139 (192)
T d1m6ya2 77 FKVSYREADFLLKTLGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVV 139 (192)
T ss_dssp EECCGGGHHHHHHHTTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEE
T ss_pred hhHHHhhHHHHHHHcCCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeee
Confidence 88887664 478999987655422 221 1145667777777766665443
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=99.01 E-value=3.6e-10 Score=91.64 Aligned_cols=119 Identities=12% Similarity=0.096 Sum_probs=85.1
Q ss_pred hhcCchhHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCC-EEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCC
Q 020710 126 IRLGHSKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGA-IVSASDISAAMVAEARKKAEEELLADNGGEAPV 204 (322)
Q Consensus 126 ~~~~~~~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~ 204 (322)
.|+......+.+.++|... ..+.+|||++||+|.++...+.+|+ +|++||.++.+++.+++++...+..+
T Consensus 23 ~RPt~~~vre~lfn~l~~~--~~~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~k~N~~~~~~~~------- 93 (183)
T d2fpoa1 23 LRPTTDRVRETLFNWLAPV--IVDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGN------- 93 (183)
T ss_dssp ----CHHHHHHHHHHHHHH--HTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCS-------
T ss_pred cCcCcHHHHHHHHhhhhcc--cchhhhhhhhccccceeeeEEecCcceeEEEEEeechhhHHHHHHhhccccc-------
Confidence 3444555556777777653 3578999999999999999999987 69999999999999999987755432
Q ss_pred CCceEEcccccC----CCCccEEEEcccccccCcchHHHHHHHHHh--ccCCeEEEEEC
Q 020710 205 MPKFEVKDLESL----DGKYDTVVCLDVLIHYPQSKADGMIAHLAS--LAEKRLILSFA 257 (322)
Q Consensus 205 ~~~~~~~d~~~~----~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~--~~~~~~il~~~ 257 (322)
..++..|+... ..+||+|++.--.. ......++..+.+ ++.+++++.+.
T Consensus 94 -~~ii~~d~~~~l~~~~~~fDlIf~DPPY~---~~~~~~~l~~l~~~~~L~~~~iIiiE 148 (183)
T d2fpoa1 94 -ARVVNSNAMSFLAQKGTPHNIVFVDPPFR---RGLLEETINLLEDNGWLADEALIYVE 148 (183)
T ss_dssp -EEEECSCHHHHHSSCCCCEEEEEECCSSS---TTTHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred -eeeeeecccccccccccccCEEEEcCccc---cchHHHHHHHHHHCCCCCCCeEEEEE
Confidence 37788886553 67899999865432 2225567777765 35666666553
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.00 E-value=7.7e-10 Score=91.85 Aligned_cols=99 Identities=18% Similarity=0.157 Sum_probs=76.4
Q ss_pred CCCeEEEECCCcccchHHHHhc---CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQ---GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
++.+|||+|||+|..+..+++. +.+|+++|+++++++.|++++...+..+++ +++.+|..+.
T Consensus 56 kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i-------~l~~Gd~~e~l~~l~~~~ 128 (214)
T d2cl5a1 56 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKV-------TILNGASQDLIPQLKKKY 128 (214)
T ss_dssp CCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGE-------EEEESCHHHHGGGHHHHS
T ss_pred CCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccc-------eeeeccccccccchhhcc
Confidence 4689999999999999999975 679999999999999999999998887766 9999997553
Q ss_pred -CCCccEEEEcccccccCcch-HHHHHHHHHhccCCeEEEEEC
Q 020710 217 -DGKYDTVVCLDVLIHYPQSK-ADGMIAHLASLAEKRLILSFA 257 (322)
Q Consensus 217 -~~~fD~V~~~~~l~~~~~~~-~~~~l~~l~~~~~~~~il~~~ 257 (322)
.+.||+|++- |..+.. ....+.+..+++++|++|++.
T Consensus 129 ~~~~~D~ifiD----~~~~~~~~~~~l~~~~~lLkpGGvIv~D 167 (214)
T d2cl5a1 129 DVDTLDMVFLD----HWKDRYLPDTLLLEKCGLLRKGTVLLAD 167 (214)
T ss_dssp CCCCEEEEEEC----SCGGGHHHHHHHHHHTTCEEEEEEEEES
T ss_pred cccccceeeec----ccccccccHHHHHHHhCccCCCcEEEEe
Confidence 3679999975 222211 112344555667778877664
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.88 E-value=3.2e-09 Score=88.66 Aligned_cols=99 Identities=13% Similarity=0.097 Sum_probs=81.3
Q ss_pred CCCeEEEECCCcccchHHHHhc---CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQ---GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
++.+|||||+++|+.+.++++. +.+++.+|.+++..+.|++.+.+.+..+++ +++.+|+.+.
T Consensus 59 ~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i-------~~~~g~a~~~L~~l~~~~ 131 (227)
T d1susa1 59 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKI-------DFREGPALPVLDEMIKDE 131 (227)
T ss_dssp TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGE-------EEEESCHHHHHHHHHHCG
T ss_pred CCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccce-------eeeehHHHHHHHHHHhcc
Confidence 4789999999999999999964 679999999999999999999999887766 8999997553
Q ss_pred --CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEECC
Q 020710 217 --DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAP 258 (322)
Q Consensus 217 --~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~ 258 (322)
.++||+|+.-. ........++.+.+++++|+++.+..
T Consensus 132 ~~~~~fD~iFiDa-----~k~~y~~~~e~~~~ll~~gGiii~DN 170 (227)
T d1susa1 132 KNHGSYDFIFVDA-----DKDNYLNYHKRLIDLVKVGGVIGYDN 170 (227)
T ss_dssp GGTTCBSEEEECS-----CSTTHHHHHHHHHHHBCTTCCEEEET
T ss_pred ccCCceeEEEecc-----chhhhHHHHHHHHhhcCCCcEEEEcc
Confidence 45899999742 22336688888888888888777653
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=98.67 E-value=4.4e-08 Score=79.00 Aligned_cols=121 Identities=13% Similarity=0.141 Sum_probs=83.6
Q ss_pred hhcCchhHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCC-EEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCC
Q 020710 126 IRLGHSKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGA-IVSASDISAAMVAEARKKAEEELLADNGGEAPV 204 (322)
Q Consensus 126 ~~~~~~~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~ 204 (322)
.|+......+.+.++|... ..+.+|||+.||||.++...+.+|+ +|+.||.+...++..+++++..+..+.
T Consensus 23 ~RPt~~~vrealFn~l~~~--~~~~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~~~ik~Ni~~l~~~~~------ 94 (183)
T d2ifta1 23 LRPTGDRVKETLFNWLMPY--IHQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSE------ 94 (183)
T ss_dssp -----CHHHHHHHHHHHHH--HTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTT------
T ss_pred cCcCcHHHHHHHHHHhhhh--cccceEeecccCccceeeeeeeecceeeEEeecccchhhhHhhHHhhhccccc------
Confidence 4555555667777888653 2578999999999999999999988 699999999999999999987655331
Q ss_pred CCceEEcccccC------CCCccEEEEcccccccCcchHHHHHHHHHh--ccCCeEEEEEC
Q 020710 205 MPKFEVKDLESL------DGKYDTVVCLDVLIHYPQSKADGMIAHLAS--LAEKRLILSFA 257 (322)
Q Consensus 205 ~~~~~~~d~~~~------~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~--~~~~~~il~~~ 257 (322)
...+...|..+. ..+||+|++---... ......+..+.. ++.+++++.+.
T Consensus 95 ~~~~~~~d~~~~l~~~~~~~~fDlIFlDPPY~~---~~~~~~l~~l~~~~~L~~~~liiiE 152 (183)
T d2ifta1 95 QAEVINQSSLDFLKQPQNQPHFDVVFLDPPFHF---NLAEQAISLLCENNWLKPNALIYVE 152 (183)
T ss_dssp TEEEECSCHHHHTTSCCSSCCEEEEEECCCSSS---CHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred ccccccccccccccccccCCcccEEEechhHhh---hhHHHHHHHHHHhCCcCCCcEEEEE
Confidence 114455554331 457999998655422 225677777765 45666666553
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=98.64 E-value=2.2e-08 Score=83.90 Aligned_cols=69 Identities=16% Similarity=0.238 Sum_probs=56.1
Q ss_pred HHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccc
Q 020710 135 ENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLE 214 (322)
Q Consensus 135 ~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 214 (322)
+++++.+. ..++.+|||||||+|.++..|++.+.+|++||+++.+++..++++.+.. ++.++.+|+.
T Consensus 11 ~~iv~~~~---~~~~d~VlEIGpG~G~LT~~Ll~~~~~v~avE~D~~l~~~l~~~~~~~~----------n~~i~~~D~l 77 (235)
T d1qama_ 11 DKIMTNIR---LNEHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLCKTTENKLVDHD----------NFQVLNKDIL 77 (235)
T ss_dssp HHHHTTCC---CCTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHTTTCC----------SEEEECCCGG
T ss_pred HHHHHhcC---CCCCCeEEEECCCchHHHHHHHhCcCceEEEeeccchHHHHHHHhhccc----------chhhhhhhhh
Confidence 44444443 3478999999999999999999999999999999999999998875432 2388999988
Q ss_pred cC
Q 020710 215 SL 216 (322)
Q Consensus 215 ~~ 216 (322)
+.
T Consensus 78 ~~ 79 (235)
T d1qama_ 78 QF 79 (235)
T ss_dssp GC
T ss_pred hc
Confidence 76
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=98.56 E-value=4.5e-09 Score=88.76 Aligned_cols=95 Identities=16% Similarity=0.201 Sum_probs=69.8
Q ss_pred HHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcc
Q 020710 133 TVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKD 212 (322)
Q Consensus 133 ~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d 212 (322)
.++++++.+... ++.+|||||||+|.++..|++.+.+|++||+++.+++.+++++.... +++++.+|
T Consensus 17 ii~kIv~~~~~~---~~d~VLEIGpG~G~LT~~L~~~~~~v~aIE~D~~l~~~l~~~~~~~~----------n~~ii~~D 83 (245)
T d1yuba_ 17 VLNQIIKQLNLK---ETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFNLSSEKLKLNT----------RVTLIHQD 83 (245)
T ss_dssp THHHHHHHCCCC---SSEEEEECSCCCSSCSHHHHHHSSEEEESSSSCSSSSSSSCTTTTCS----------EEEECCSC
T ss_pred HHHHHHHhcCCC---CCCeEEEECCCccHHHHHHHhhcCceeEeeecccchhhhhhhhhhcc----------chhhhhhh
Confidence 456677666543 67899999999999999999999999999999999988877664321 23888999
Q ss_pred cccC---CCCccEEEEcccccccCcchHHHHH
Q 020710 213 LESL---DGKYDTVVCLDVLIHYPQSKADGMI 241 (322)
Q Consensus 213 ~~~~---~~~fD~V~~~~~l~~~~~~~~~~~l 241 (322)
+.+. ...++.|+.+-- .|+..+-+..++
T Consensus 84 ~l~~~~~~~~~~~vv~NLP-Y~Ist~il~~~l 114 (245)
T d1yuba_ 84 ILQFQFPNKQRYKIVGNIP-YHLSTQIIKKVV 114 (245)
T ss_dssp CTTTTCCCSSEEEEEEECC-SSSCHHHHHHHH
T ss_pred hhccccccceeeeEeeeee-hhhhHHHHHHHh
Confidence 8876 245555555444 477765444444
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=98.53 E-value=1.5e-07 Score=81.98 Aligned_cols=106 Identities=14% Similarity=0.107 Sum_probs=76.1
Q ss_pred CCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC----CCCcc
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL----DGKYD 221 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~~fD 221 (322)
.+++||.||+|.|..+..+++. ..+|+.||+++.+++.+++.+....... ..-.+++++.+|+... +++||
T Consensus 77 ~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~---~~d~rv~i~~~Da~~~l~~~~~~yD 153 (312)
T d1uira_ 77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGA---FDDPRAVLVIDDARAYLERTEERYD 153 (312)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTG---GGCTTEEEEESCHHHHHHHCCCCEE
T ss_pred CcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCc---cCCCceEEEEchHHHHhhhcCCccc
Confidence 5789999999999999999877 4589999999999999999885432100 0012238889998664 67899
Q ss_pred EEEEccc--cc-ccCcchH--HHHHHHHHhccCCeEEEEE
Q 020710 222 TVVCLDV--LI-HYPQSKA--DGMIAHLASLAEKRLILSF 256 (322)
Q Consensus 222 ~V~~~~~--l~-~~~~~~~--~~~l~~l~~~~~~~~il~~ 256 (322)
+|++-.. .. ..+...+ .++++.+++.++++|++.+
T Consensus 154 vIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~ 193 (312)
T d1uira_ 154 VVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGM 193 (312)
T ss_dssp EEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEE
T ss_pred EEEEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEE
Confidence 9996432 11 1111111 5799999998888887765
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=98.48 E-value=4.1e-07 Score=79.96 Aligned_cols=105 Identities=18% Similarity=0.161 Sum_probs=73.2
Q ss_pred CCCCeEEEECCCcccchHHHHhc-------CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--C
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQ-------GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL--D 217 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~-------~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~ 217 (322)
.++.+|||.|||+|.++..+.++ ..+++|+|+++.+++.|+.+....+... .+..+|.... .
T Consensus 116 ~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~~---------~~~~~d~~~~~~~ 186 (328)
T d2f8la1 116 KKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKM---------TLLHQDGLANLLV 186 (328)
T ss_dssp CSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCC---------EEEESCTTSCCCC
T ss_pred CCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhhh---------hhhcccccccccc
Confidence 35678999999999999887643 2369999999999999998877665544 6777775443 6
Q ss_pred CCccEEEEcccccccCcch----------------HHHHHHHHHhccCCeEEE-EECCCh
Q 020710 218 GKYDTVVCLDVLIHYPQSK----------------ADGMIAHLASLAEKRLIL-SFAPKT 260 (322)
Q Consensus 218 ~~fD~V~~~~~l~~~~~~~----------------~~~~l~~l~~~~~~~~il-~~~~~~ 260 (322)
++||+|+++--+....... ...++.++.++++++|.+ .+.|..
T Consensus 187 ~~fD~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p~~ 246 (328)
T d2f8la1 187 DPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDA 246 (328)
T ss_dssp CCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGG
T ss_pred ccccccccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEecCc
Confidence 7899999987653322211 123577777766555543 444444
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.48 E-value=1.2e-07 Score=81.28 Aligned_cols=109 Identities=11% Similarity=0.007 Sum_probs=74.0
Q ss_pred CCCeEEEECCCcccchHHHHhc-CCEEEEEeCCHHHHHHHHHHhHHhhhcc--CCCCCCCCCceEEcccccC---CCCcc
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQ-GAIVSASDISAAMVAEARKKAEEELLAD--NGGEAPVMPKFEVKDLESL---DGKYD 221 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~--~~~~~~~~~~~~~~d~~~~---~~~fD 221 (322)
++.+||.||+|.|..+..+.+. ..+|+.||+++.+++.+++.+....... .....-.+++++.+|+... +++||
T Consensus 72 ~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~yD 151 (276)
T d1mjfa_ 72 KPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRGFD 151 (276)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCCEE
T ss_pred CCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccCCCC
Confidence 5789999999999999998877 4479999999999999998763221000 0000012238888997654 68899
Q ss_pred EEEEcccccccCcchH--HHHHHHHHhccCCeEEEEE
Q 020710 222 TVVCLDVLIHYPQSKA--DGMIAHLASLAEKRLILSF 256 (322)
Q Consensus 222 ~V~~~~~l~~~~~~~~--~~~l~~l~~~~~~~~il~~ 256 (322)
+|++-..-..-+...+ .++++.+++.+.++|++.+
T Consensus 152 vIi~D~~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~ 188 (276)
T d1mjfa_ 152 VIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVT 188 (276)
T ss_dssp EEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEE
T ss_pred EEEEeCCCCCCCcccccCHHHHHhhHhhcCCCceEEE
Confidence 9997433211111111 5789999998888887765
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.42 E-value=4.6e-07 Score=77.40 Aligned_cols=84 Identities=23% Similarity=0.284 Sum_probs=65.0
Q ss_pred HHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcc
Q 020710 133 TVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKD 212 (322)
Q Consensus 133 ~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d 212 (322)
.++++++.+.. .++..|||||+|+|.++..|++.+.+|++||+++.+++..++.+.......++ +++.+|
T Consensus 9 i~~kIv~~~~~---~~~d~VlEIGPG~G~LT~~Ll~~~~~v~aiE~D~~l~~~L~~~~~~~~~~~~~-------~~i~~D 78 (278)
T d1zq9a1 9 IINSIIDKAAL---RPTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELHKRVQGTPVASKL-------QVLVGD 78 (278)
T ss_dssp HHHHHHHHTCC---CTTCEEEEECCTTSTTHHHHHHHSSEEEEEESCHHHHHHHHHHHTTSTTGGGE-------EEEESC
T ss_pred HHHHHHHHhCC---CCCCEEEEECCCchHHHHHHHhcCCcEEEEEEccchhHHHHHHHhhhccccch-------hhhHHH
Confidence 34555555543 36789999999999999999999999999999999999999988665433322 789999
Q ss_pred cccCC-CCccEEEEc
Q 020710 213 LESLD-GKYDTVVCL 226 (322)
Q Consensus 213 ~~~~~-~~fD~V~~~ 226 (322)
+...+ ..++.|+.+
T Consensus 79 ~l~~~~~~~~~vV~N 93 (278)
T d1zq9a1 79 VLKTDLPFFDTCVAN 93 (278)
T ss_dssp TTTSCCCCCSEEEEE
T ss_pred Hhhhhhhhhhhhhcc
Confidence 87763 445666654
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=98.38 E-value=1.8e-06 Score=70.42 Aligned_cols=96 Identities=20% Similarity=0.193 Sum_probs=77.0
Q ss_pred CCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--CCCccEE
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL--DGKYDTV 223 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~fD~V 223 (322)
++.+|+|+|+|.|.-+..++-. ..+++.+|.+..-+...++...+.++.+ +++++..+++. +.+||+|
T Consensus 65 ~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~n--------v~v~~~R~E~~~~~~~fD~V 136 (207)
T d1jsxa_ 65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLEN--------IEPVQSRVEEFPSEPPFDGV 136 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSS--------EEEEECCTTTSCCCSCEEEE
T ss_pred cCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCCcc--------eeeeccchhhhcccccccee
Confidence 5679999999999999999865 6799999999999999988888877654 37888888886 5689999
Q ss_pred EEcccccccCcchHHHHHHHHHhccCCeEEEEEC
Q 020710 224 VCLDVLIHYPQSKADGMIAHLASLAEKRLILSFA 257 (322)
Q Consensus 224 ~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~ 257 (322)
++..+- + +..+++.+..+++.++.+.+.
T Consensus 137 ~sRA~~----~--~~~ll~~~~~~l~~~g~~~~~ 164 (207)
T d1jsxa_ 137 ISRAFA----S--LNDMVSWCHHLPGEQGRFYAL 164 (207)
T ss_dssp ECSCSS----S--HHHHHHHHTTSEEEEEEEEEE
T ss_pred hhhhhc----C--HHHHHHHHHHhcCCCcEEEEE
Confidence 986543 3 567888888777777766553
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=98.36 E-value=5.6e-07 Score=77.50 Aligned_cols=104 Identities=11% Similarity=0.091 Sum_probs=75.3
Q ss_pred CCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhh--hccCCCCCCCCCceEEcccccC----CCC
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEEL--LADNGGEAPVMPKFEVKDLESL----DGK 219 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~--~~~~~~~~~~~~~~~~~d~~~~----~~~ 219 (322)
.+.+||-||.|.|..+..+.+. ..+|+.||+++.+++.+++.+.... ..+ .+++++.+|+... +++
T Consensus 89 ~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d------~rv~v~~~Da~~~l~~~~~~ 162 (295)
T d1inla_ 89 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDD------PRAEIVIANGAEYVRKFKNE 162 (295)
T ss_dssp SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGC------TTEEEEESCHHHHGGGCSSC
T ss_pred CCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccC------CCcEEEhhhHHHHHhcCCCC
Confidence 4789999999999999999987 3579999999999999999876432 121 2238889997554 678
Q ss_pred ccEEEEcccccc-cCcch--HHHHHHHHHhccCCeEEEEEC
Q 020710 220 YDTVVCLDVLIH-YPQSK--ADGMIAHLASLAEKRLILSFA 257 (322)
Q Consensus 220 fD~V~~~~~l~~-~~~~~--~~~~l~~l~~~~~~~~il~~~ 257 (322)
||+|++-..-.. .+... -.++++.+++.+.++|++...
T Consensus 163 yDvIi~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q 203 (295)
T d1inla_ 163 FDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAE 203 (295)
T ss_dssp EEEEEEEC----------CCSHHHHHHHHHHEEEEEEEEEE
T ss_pred CCEEEEcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEe
Confidence 999997432211 11111 258999999988888877663
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.35 E-value=1.6e-06 Score=74.53 Aligned_cols=106 Identities=13% Similarity=0.150 Sum_probs=76.4
Q ss_pred CCCeEEEECCCcccchHHHHhc-C-CEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-----CCCc
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQ-G-AIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-----DGKY 220 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~-~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-----~~~f 220 (322)
.+.+||-||.|.|..+..+.+. + .+++.|||++.+++.+++.+....... .-.+++.+.+|.... +++|
T Consensus 80 ~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~----~~~r~~i~~~Da~~~l~~~~~~~y 155 (290)
T d1xj5a_ 80 NPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGY----EDPRVNLVIGDGVAFLKNAAEGSY 155 (290)
T ss_dssp CCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGG----GSTTEEEEESCHHHHHHTSCTTCE
T ss_pred CCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccc----cCCCcEEEEccHHHHHhhccccCc
Confidence 5789999999999999999987 3 479999999999999999875432110 112338888886543 4689
Q ss_pred cEEEEcccccccCcch--HHHHHHHHHhccCCeEEEEEC
Q 020710 221 DTVVCLDVLIHYPQSK--ADGMIAHLASLAEKRLILSFA 257 (322)
Q Consensus 221 D~V~~~~~l~~~~~~~--~~~~l~~l~~~~~~~~il~~~ 257 (322)
|+|+.-..-..-+... -.++++.+++.++++|++...
T Consensus 156 DvIi~D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q 194 (290)
T d1xj5a_ 156 DAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQ 194 (290)
T ss_dssp EEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEE
T ss_pred cEEEEcCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEe
Confidence 9999743211111111 257999999988888888764
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=98.33 E-value=6.9e-07 Score=71.51 Aligned_cols=109 Identities=15% Similarity=0.109 Sum_probs=78.4
Q ss_pred hHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEc
Q 020710 132 KTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVK 211 (322)
Q Consensus 132 ~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (322)
.+++++++.+... +++.++|..||.|..+..+++.+.+|+|+|.++.+++.+++...+ + ..++..
T Consensus 5 Vll~Evl~~l~~~---~g~~~vD~T~G~GGhs~~iL~~~~~viaiD~D~~ai~~a~~~~~~-----~-------~~~~~~ 69 (182)
T d1wg8a2 5 VLYQEALDLLAVR---PGGVYVDATLGGAGHARGILERGGRVIGLDQDPEAVARAKGLHLP-----G-------LTVVQG 69 (182)
T ss_dssp TTHHHHHHHHTCC---TTCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHTCCT-----T-------EEEEES
T ss_pred hHHHHHHHhcCCC---CCCEEEEeCCCCcHHHHHHhcccCcEEEEhhhhhHHHHHhhcccc-----c-------eeEeeh
Confidence 4668888888754 789999999999999999999988999999999999998765321 1 277777
Q ss_pred ccccC--------CCCccEEEEcccccccC----cch---HHHHHHHHHhccCCeEEEE
Q 020710 212 DLESL--------DGKYDTVVCLDVLIHYP----QSK---ADGMIAHLASLAEKRLILS 255 (322)
Q Consensus 212 d~~~~--------~~~fD~V~~~~~l~~~~----~~~---~~~~l~~l~~~~~~~~il~ 255 (322)
++.++ .+.+|.|+.-..+..+. +.+ ....|.....++++++.+.
T Consensus 70 ~f~~~~~~l~~~~~~~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ 128 (182)
T d1wg8a2 70 NFRHLKRHLAALGVERVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLV 128 (182)
T ss_dssp CGGGHHHHHHHTTCSCEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEE
T ss_pred HHHHHHHHHHHcCCCccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEE
Confidence 77664 46799999865543322 122 2334555555566565444
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=98.32 E-value=1.3e-06 Score=74.46 Aligned_cols=106 Identities=16% Similarity=0.101 Sum_probs=77.0
Q ss_pred CCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC----CCCcc
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL----DGKYD 221 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~~fD 221 (322)
++.+||-||.|.|..+..+.+. ..+|+.|||++.+++.+++.+....... .-.+++++.+|+... +.+||
T Consensus 75 ~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~----~d~r~~i~~~D~~~~l~~~~~~yD 150 (274)
T d1iy9a_ 75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKL----DDPRVDVQVDDGFMHIAKSENQYD 150 (274)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTT----TSTTEEEEESCSHHHHHTCCSCEE
T ss_pred CcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccc----cCCCeEEEechHHHHHhhcCCCCC
Confidence 5789999999999999999987 3589999999999999999886432110 112348888997553 67899
Q ss_pred EEEEcccccccCcch--HHHHHHHHHhccCCeEEEEEC
Q 020710 222 TVVCLDVLIHYPQSK--ADGMIAHLASLAEKRLILSFA 257 (322)
Q Consensus 222 ~V~~~~~l~~~~~~~--~~~~l~~l~~~~~~~~il~~~ 257 (322)
+|+.-..-..-+... -.++++.+++.++++|++...
T Consensus 151 vIi~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q 188 (274)
T d1iy9a_ 151 VIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQ 188 (274)
T ss_dssp EEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEE
T ss_pred EEEEcCCCCCCcchhhccHHHHHHHHhhcCCCceEEEe
Confidence 999753211111111 248899999988888877653
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.31 E-value=1.3e-06 Score=74.85 Aligned_cols=105 Identities=12% Similarity=0.110 Sum_probs=74.6
Q ss_pred CCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC----CCCcc
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL----DGKYD 221 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~~fD 221 (322)
.+++||-||.|.|..+..+.+. ..+++.|||++.+++.+++.+....... .-.+++++.+|+... .++||
T Consensus 78 ~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~----~d~rv~i~~~Da~~~l~~~~~~yD 153 (285)
T d2o07a1 78 NPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGY----SSSKLTLHVGDGFEFMKQNQDAFD 153 (285)
T ss_dssp SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGG----GCTTEEEEESCHHHHHHTCSSCEE
T ss_pred CcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhcccc----CCCCceEEEccHHHHHhcCCCCCC
Confidence 5789999999999999999987 4589999999999999999886421100 012338889997553 67899
Q ss_pred EEEEcccccccCcch--HHHHHHHHHhccCCeEEEEE
Q 020710 222 TVVCLDVLIHYPQSK--ADGMIAHLASLAEKRLILSF 256 (322)
Q Consensus 222 ~V~~~~~l~~~~~~~--~~~~l~~l~~~~~~~~il~~ 256 (322)
+|++-..--.-+... -.++++.+++.++++|++.+
T Consensus 154 vIi~D~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~ 190 (285)
T d2o07a1 154 VIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCC 190 (285)
T ss_dssp EEEEECC-----------CHHHHHHHHHEEEEEEEEE
T ss_pred EEEEcCCCCCCcccccccHHHHHHHHHhcCCCCeEEE
Confidence 999743211111111 13789999998888887765
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=98.28 E-value=4.8e-07 Score=76.28 Aligned_cols=71 Identities=14% Similarity=0.239 Sum_probs=56.6
Q ss_pred HHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcc
Q 020710 133 TVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKD 212 (322)
Q Consensus 133 ~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d 212 (322)
.++++++.+... ++..|||||||+|.++..|++.+.+|++||+++.+++..+++..... +++++.+|
T Consensus 9 ~~~~Iv~~~~~~---~~d~vlEIGpG~G~LT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~~~----------~~~ii~~D 75 (252)
T d1qyra_ 9 VIDSIVSAINPQ---KGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPFLGP----------KLTIYQQD 75 (252)
T ss_dssp HHHHHHHHHCCC---TTCCEEEECCTTTTTHHHHHTTCSCEEEECCCHHHHHHHHTCTTTGG----------GEEEECSC
T ss_pred HHHHHHHhcCCC---CCCEEEEECCCchHHHHHHHccCCceEEEEeccchhHHHHHHhhhcc----------chhHHhhh
Confidence 456666666543 68899999999999999999999999999999999999887553321 12788888
Q ss_pred cccC
Q 020710 213 LESL 216 (322)
Q Consensus 213 ~~~~ 216 (322)
+...
T Consensus 76 ~l~~ 79 (252)
T d1qyra_ 76 AMTF 79 (252)
T ss_dssp GGGC
T ss_pred hhhh
Confidence 8765
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=98.28 E-value=9.6e-07 Score=76.41 Aligned_cols=106 Identities=15% Similarity=0.074 Sum_probs=73.7
Q ss_pred CCCeEEEECCCcccchHHHHhcC--CEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC----CCCcc
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQG--AIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL----DGKYD 221 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~~fD 221 (322)
.+.+||-||.|.|..+..+.+.. .+|+.||+++.+++.+++.+....... .-.+++++.+|+... ..+||
T Consensus 106 ~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~----~dprv~i~i~Da~~~l~~~~~~yD 181 (312)
T d2b2ca1 106 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGF----SHPKLDLFCGDGFEFLKNHKNEFD 181 (312)
T ss_dssp SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGG----GCTTEEEECSCHHHHHHHCTTCEE
T ss_pred CCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhcccc----CCCCeEEEEchHHHHHHhCCCCCC
Confidence 57899999999999999999873 589999999999999999875422110 112337888887654 68899
Q ss_pred EEEEcccccccCcch--HHHHHHHHHhccCCeEEEEEC
Q 020710 222 TVVCLDVLIHYPQSK--ADGMIAHLASLAEKRLILSFA 257 (322)
Q Consensus 222 ~V~~~~~l~~~~~~~--~~~~l~~l~~~~~~~~il~~~ 257 (322)
+|++-..-..-+... -.++++.+++.+.++|++...
T Consensus 182 vII~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q 219 (312)
T d2b2ca1 182 VIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQ 219 (312)
T ss_dssp EEEECCC-------------HHHHHHHHEEEEEEEEEE
T ss_pred EEEEcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEe
Confidence 999754322111111 257899999988888877663
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=98.17 E-value=4e-05 Score=63.43 Aligned_cols=125 Identities=17% Similarity=0.182 Sum_probs=89.4
Q ss_pred CCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC------CCC
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL------DGK 219 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~------~~~ 219 (322)
...+|+|||+|.|.-+..++-. ..+++-+|-+..-+.-.++-..+.++.+ +.++...+++. .++
T Consensus 70 ~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L~n--------~~i~~~R~E~~~~~~~~~~~ 141 (239)
T d1xdza_ 70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLEN--------TTFCHDRAETFGQRKDVRES 141 (239)
T ss_dssp GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSS--------EEEEESCHHHHTTCTTTTTC
T ss_pred CCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCCCC--------cEEEeehhhhcccccccccc
Confidence 4678999999999999999864 6789999999999988888888877764 25666666543 468
Q ss_pred ccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCCCCCccccccCCHHHHHHHHHHCCC
Q 020710 220 YDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKATRAYLHAEADVERALQKVGW 299 (322)
Q Consensus 220 fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf 299 (322)
||+|++-.+- + +..+++.+..++++++.+.+.....+.+ ..++.++.+...|+
T Consensus 142 ~D~v~sRAva----~--l~~ll~~~~~~l~~~g~~i~~KG~~~~~---------------------El~~a~~~~~~~~~ 194 (239)
T d1xdza_ 142 YDIVTARAVA----R--LSVLSELCLPLVKKNGLFVALKAASAEE---------------------ELNAGKKAITTLGG 194 (239)
T ss_dssp EEEEEEECCS----C--HHHHHHHHGGGEEEEEEEEEEECC-CHH---------------------HHHHHHHHHHHTTE
T ss_pred ceEEEEhhhh----C--HHHHHHHHhhhcccCCEEEEECCCChHH---------------------HHHHHHHHHHHcCC
Confidence 9999996443 4 6688888888877777665533221111 12344567778898
Q ss_pred EEEEEeee
Q 020710 300 KIRKRGLI 307 (322)
Q Consensus 300 ~vv~~~~~ 307 (322)
++..+...
T Consensus 195 ~~~~v~~~ 202 (239)
T d1xdza_ 195 ELENIHSF 202 (239)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEEE
Confidence 87765444
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.13 E-value=1.3e-06 Score=71.86 Aligned_cols=77 Identities=10% Similarity=0.137 Sum_probs=55.8
Q ss_pred HHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc---CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceE
Q 020710 133 TVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ---GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFE 209 (322)
Q Consensus 133 ~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~ 209 (322)
.++.+++++... ++.+|||.|||+|.++..+.+. ...++|+|+++.+++.+++ + .+.
T Consensus 7 i~~~m~~l~~~~---~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~~~--------~---------~~~ 66 (223)
T d2ih2a1 7 VVDFMVSLAEAP---RGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLPPW--------A---------EGI 66 (223)
T ss_dssp HHHHHHHHCCCC---TTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCCTT--------E---------EEE
T ss_pred HHHHHHHhcCCC---CcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhccc--------c---------eee
Confidence 445566665543 6789999999999999888765 5679999999876543211 1 566
Q ss_pred EcccccC--CCCccEEEEcccc
Q 020710 210 VKDLESL--DGKYDTVVCLDVL 229 (322)
Q Consensus 210 ~~d~~~~--~~~fD~V~~~~~l 229 (322)
.+|.... ...||+|+++...
T Consensus 67 ~~~~~~~~~~~~fd~ii~npP~ 88 (223)
T d2ih2a1 67 LADFLLWEPGEAFDLILGNPPY 88 (223)
T ss_dssp ESCGGGCCCSSCEEEEEECCCC
T ss_pred eeehhccccccccceecccCcc
Confidence 7776554 5789999998654
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=97.79 E-value=7.2e-05 Score=64.69 Aligned_cols=131 Identities=13% Similarity=0.128 Sum_probs=86.3
Q ss_pred CCCCeEEEECCCcccchHHHHhc---CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC---CCCc
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQ---GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL---DGKY 220 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~f 220 (322)
.++.+|||++||.|.=+..++.. ...++++|+++.-++..+++....+..+ +.....|.... ++.|
T Consensus 115 ~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~--------i~~~~~d~~~~~~~~~~f 186 (313)
T d1ixka_ 115 KPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLN--------VILFHSSSLHIGELNVEF 186 (313)
T ss_dssp CTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCS--------EEEESSCGGGGGGGCCCE
T ss_pred CccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhc--------cccccccccccccccccc
Confidence 47889999999999988888765 5579999999999999999998887654 24444554433 6889
Q ss_pred cEEEEc------ccccccCc-------chH-------HHHHHHHHhccCCeEEEEECCChhhHHHHHHhhccCCCCCCcc
Q 020710 221 DTVVCL------DVLIHYPQ-------SKA-------DGMIAHLASLAEKRLILSFAPKTFYYDLLKRVGELFPGPSKAT 280 (322)
Q Consensus 221 D~V~~~------~~l~~~~~-------~~~-------~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (322)
|.|++- .++..-|+ ..+ .+++.+..+++++||.+++...++...
T Consensus 187 D~ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl~~e---------------- 250 (313)
T d1ixka_ 187 DKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPE---------------- 250 (313)
T ss_dssp EEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGG----------------
T ss_pred cEEEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccCChH----------------
Confidence 999972 22322221 111 234455555567777776655443221
Q ss_pred ccccCCHHHHHHHHHHCCCEEEEEe
Q 020710 281 RAYLHAEADVERALQKVGWKIRKRG 305 (322)
Q Consensus 281 ~~~~~~~~~~~~~l~~aGf~vv~~~ 305 (322)
-+++-++..+++.+|+++...
T Consensus 251 ----ENE~VV~~~L~~~~~~~~~~~ 271 (313)
T d1ixka_ 251 ----ENEFVIQWALDNFDVELLPLK 271 (313)
T ss_dssp ----GTHHHHHHHHHHSSEEEECCC
T ss_pred ----hHHHHHHHHHhcCCCEEeecc
Confidence 145667777777777776543
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=97.67 E-value=9.7e-05 Score=65.34 Aligned_cols=103 Identities=17% Similarity=0.100 Sum_probs=66.2
Q ss_pred CCCeEEEECCCcccchHHHHhc-CC-EEEEEeCCHHHHHHHHHHhHHhhhccCCC-------CCCCCCceEEcccccC--
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQ-GA-IVSASDISAAMVAEARKKAEEELLADNGG-------EAPVMPKFEVKDLESL-- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~-~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~-------~~~~~~~~~~~d~~~~-- 216 (322)
++.+|||..||+|..++.++.. +. +|+++|+|+.+++.+++++..++..+... .....+.+.+.|+...
T Consensus 45 ~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~ 124 (375)
T d2dula1 45 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA 124 (375)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhH
Confidence 4789999999999999976654 54 79999999999999999998765432000 0000124455554332
Q ss_pred --CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEE
Q 020710 217 --DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSF 256 (322)
Q Consensus 217 --~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~ 256 (322)
...||+|.+-- +-.+. .++....+..+.+|++.+
T Consensus 125 ~~~~~fDvIDiDP----fGs~~--pfldsAi~a~~~~Gll~v 160 (375)
T d2dula1 125 ERHRYFHFIDLDP----FGSPM--EFLDTALRSAKRRGILGV 160 (375)
T ss_dssp HSTTCEEEEEECC----SSCCH--HHHHHHHHHEEEEEEEEE
T ss_pred hhcCcCCcccCCC----CCCcH--HHHHHHHHHhccCCEEEE
Confidence 46799988643 22322 555555554455555543
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.63 E-value=0.00029 Score=59.91 Aligned_cols=106 Identities=13% Similarity=0.144 Sum_probs=73.5
Q ss_pred CCCCeEEEECCCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-----CCC
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-----DGK 219 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-----~~~ 219 (322)
.++.+|||+++|.|.=+..+++. ..+|+++|+++.-++..++++...+..+ .....+.... .+.
T Consensus 101 ~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~~---------~~~~~~~~~~~~~~~~~~ 171 (284)
T d1sqga2 101 QNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKA---------TVKQGDGRYPSQWCGEQQ 171 (284)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCC---------EEEECCTTCTHHHHTTCC
T ss_pred cccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccccc---------eeeeccccccchhccccc
Confidence 47889999999999999999876 3579999999999999999999888764 3333332221 578
Q ss_pred ccEEEE------cccccccCcc-------h-------HHHHHHHHHhccCCeEEEEECCChh
Q 020710 220 YDTVVC------LDVLIHYPQS-------K-------ADGMIAHLASLAEKRLILSFAPKTF 261 (322)
Q Consensus 220 fD~V~~------~~~l~~~~~~-------~-------~~~~l~~l~~~~~~~~il~~~~~~~ 261 (322)
||.|++ ..++..-|+- . -..+|++..+++++||.+.+...++
T Consensus 172 fd~IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~ 233 (284)
T d1sqga2 172 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSV 233 (284)
T ss_dssp EEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCC
T ss_pred ccEEEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecC
Confidence 999997 2233222321 1 1345666666677777776654443
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=97.62 E-value=0.00014 Score=65.70 Aligned_cols=119 Identities=14% Similarity=0.185 Sum_probs=80.0
Q ss_pred hhHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc---------------CCEEEEEeCCHHHHHHHHHHhHHhhh
Q 020710 131 SKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ---------------GAIVSASDISAAMVAEARKKAEEELL 195 (322)
Q Consensus 131 ~~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~---------------~~~v~gvD~s~~~l~~a~~~~~~~~~ 195 (322)
...++.+++++... ++.+|||..||+|.++..+.++ ...+.|+|+++.+...|+-+..-++.
T Consensus 148 ~~Iv~~mv~ll~~~---~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~ 224 (425)
T d2okca1 148 RPLIQAMVDCINPQ---MGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGI 224 (425)
T ss_dssp HHHHHHHHHHHCCC---TTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTC
T ss_pred hhhhHhhheeccCc---ccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCC
Confidence 34566666776543 5789999999999999887653 13489999999999999888766554
Q ss_pred ccCCCCCCCCCceEEcccccC--CCCccEEEEcccccccCc---------------chHHHHHHHHHhccCCeEE-EEEC
Q 020710 196 ADNGGEAPVMPKFEVKDLESL--DGKYDTVVCLDVLIHYPQ---------------SKADGMIAHLASLAEKRLI-LSFA 257 (322)
Q Consensus 196 ~~~~~~~~~~~~~~~~d~~~~--~~~fD~V~~~~~l~~~~~---------------~~~~~~l~~l~~~~~~~~i-l~~~ 257 (322)
.. ........|.... ..+||+|+++--+..-.. ..-..++.++.++++++|. ..+.
T Consensus 225 ~~------~~~~i~~~d~l~~~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~ 298 (425)
T d2okca1 225 GT------DRSPIVCEDSLEKEPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVL 298 (425)
T ss_dssp CS------SCCSEEECCTTTSCCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cc------ccceeecCchhhhhcccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEe
Confidence 32 1125677776543 578999999876632110 0123578888777655553 3343
Q ss_pred C
Q 020710 258 P 258 (322)
Q Consensus 258 ~ 258 (322)
|
T Consensus 299 p 299 (425)
T d2okca1 299 P 299 (425)
T ss_dssp E
T ss_pred c
Confidence 4
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=97.61 E-value=0.00023 Score=56.26 Aligned_cols=76 Identities=18% Similarity=0.173 Sum_probs=54.1
Q ss_pred HHHHHHhhhcC-CCCCCeEEEECCCcccchHHHHhc---CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEE
Q 020710 135 ENTMQMLNDEG-SLKGIAVCDAGCGTGSLAIPLAKQ---GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEV 210 (322)
Q Consensus 135 ~~~~~~l~~~~-~~~~~~VLDvGcG~G~~~~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~ 210 (322)
-++.+...... ..++.+|||+||+.|.++..+.+. ...++++|+.+- . .+..+.+++
T Consensus 8 fKL~EI~~k~~l~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~-----------~--------~i~~~~~~~ 68 (180)
T d1ej0a_ 8 FKLDEIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM-----------D--------PIVGVDFLQ 68 (180)
T ss_dssp HHHHHHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC-----------C--------CCTTEEEEE
T ss_pred HHHHHHHHHhCccCCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc-----------c--------ccCCceEee
Confidence 34444444432 346789999999999999999876 457999998651 0 112237889
Q ss_pred cccccC-----------CCCccEEEEcccc
Q 020710 211 KDLESL-----------DGKYDTVVCLDVL 229 (322)
Q Consensus 211 ~d~~~~-----------~~~fD~V~~~~~l 229 (322)
+|+.+. .+++|+|++-++.
T Consensus 69 ~d~~~~~~~~~~~~~~~~~~~DlVlSD~ap 98 (180)
T d1ej0a_ 69 GDFRDELVMKALLERVGDSKVQVVMSDMAP 98 (180)
T ss_dssp SCTTSHHHHHHHHHHHTTCCEEEEEECCCC
T ss_pred cccccchhhhhhhhhccCcceeEEEecccc
Confidence 988663 5789999997664
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=97.48 E-value=0.00013 Score=60.54 Aligned_cols=84 Identities=17% Similarity=0.022 Sum_probs=58.4
Q ss_pred CCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCC-CCCCCCCceEEcccccC----CCCccEE
Q 020710 149 GIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNG-GEAPVMPKFEVKDLESL----DGKYDTV 223 (322)
Q Consensus 149 ~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~-~~~~~~~~~~~~d~~~~----~~~fD~V 223 (322)
..+|||.-||.|..+..++..|++|+++|-++.+....++.+......... .....+++++.+|..+. ...||+|
T Consensus 89 ~~~VlD~TaGlG~Da~vlA~~G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~~~~~~~DvI 168 (250)
T d2oyra1 89 LPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQVV 168 (250)
T ss_dssp CCCEEETTCTTCHHHHHHHHHTCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCCSEE
T ss_pred CCEEEECCCcccHHHHHHHhCCCEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHhccCCCCCEE
Confidence 458999999999999999999999999999998776666554332211000 00001238899996443 5779999
Q ss_pred EEccccccc
Q 020710 224 VCLDVLIHY 232 (322)
Q Consensus 224 ~~~~~l~~~ 232 (322)
+.--.+.+-
T Consensus 169 YlDPMFp~~ 177 (250)
T d2oyra1 169 YLDPMFPHK 177 (250)
T ss_dssp EECCCCCCC
T ss_pred EECCCCccc
Confidence 987766443
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=97.45 E-value=8.2e-05 Score=61.36 Aligned_cols=103 Identities=10% Similarity=-0.049 Sum_probs=62.6
Q ss_pred HHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc------CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceE
Q 020710 136 NTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ------GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFE 209 (322)
Q Consensus 136 ~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~------~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~ 209 (322)
..-++|... ++.+|||+|++.|..+..++.. ..+++++|+.+........ .. .++.+.
T Consensus 71 ~~~eli~~~---KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~------~~-------~~I~~i 134 (232)
T d2bm8a1 71 VYHDMLWEL---RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS------DM-------ENITLH 134 (232)
T ss_dssp HHHHHHHHH---CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG------GC-------TTEEEE
T ss_pred HHHHHHHHh---CCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhhc------cc-------cceeee
Confidence 334455544 5789999999999887766532 4689999998754322111 11 224888
Q ss_pred EcccccC-------CCCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEECC
Q 020710 210 VKDLESL-------DGKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAP 258 (322)
Q Consensus 210 ~~d~~~~-------~~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~ 258 (322)
++|..+. ...+|.|+.-.. |+ ....+.. + .+..++++|+++++..
T Consensus 135 ~gDs~~~~~~~~l~~~~~dlIfID~~-H~-~~~v~~~-~-~~~~lLk~GG~iIveD 186 (232)
T d2bm8a1 135 QGDCSDLTTFEHLREMAHPLIFIDNA-HA-NTFNIMK-W-AVDHLLEEGDYFIIED 186 (232)
T ss_dssp ECCSSCSGGGGGGSSSCSSEEEEESS-CS-SHHHHHH-H-HHHHTCCTTCEEEECS
T ss_pred ecccccHHHHHHHHhcCCCEEEEcCC-cc-hHHHHHH-H-HHhcccCcCCEEEEEc
Confidence 8886543 456898876443 43 3322222 2 2445677777666654
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.27 E-value=0.00033 Score=59.84 Aligned_cols=72 Identities=17% Similarity=0.087 Sum_probs=59.4
Q ss_pred CCCCeEEEECCCcccchHHHHhc---CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC------C
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQ---GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL------D 217 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~------~ 217 (322)
.++.+|||++||.|.=+.+++.. ..+++++|+++.-++..++++...+..+ +.+...|.... .
T Consensus 93 ~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~~--------~~~~~~d~~~~~~~~~~~ 164 (293)
T d2b9ea1 93 PPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSC--------CELAEEDFLAVSPSDPRY 164 (293)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCS--------EEEEECCGGGSCTTCGGG
T ss_pred CccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCccc--------eeeeehhhhhhccccccc
Confidence 46889999999999998888765 5689999999999999999999887754 36777776654 2
Q ss_pred CCccEEEEc
Q 020710 218 GKYDTVVCL 226 (322)
Q Consensus 218 ~~fD~V~~~ 226 (322)
+.||.|++-
T Consensus 165 ~~fD~VL~D 173 (293)
T d2b9ea1 165 HEVHYILLD 173 (293)
T ss_dssp TTEEEEEEC
T ss_pred ceeeEEeec
Confidence 679999973
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=97.05 E-value=0.00048 Score=63.70 Aligned_cols=123 Identities=11% Similarity=0.004 Sum_probs=74.6
Q ss_pred hhHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc----C----------------CEEEEEeCCHHHHHHHHHHh
Q 020710 131 SKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ----G----------------AIVSASDISAAMVAEARKKA 190 (322)
Q Consensus 131 ~~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~----~----------------~~v~gvD~s~~~l~~a~~~~ 190 (322)
...++.+++++... ++.+|+|..||+|.++....+. . ..++|+|+++.+...++-++
T Consensus 150 ~~Iv~~mv~ll~~~---~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl 226 (524)
T d2ar0a1 150 RPLIKTIIHLLKPQ---PREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNC 226 (524)
T ss_dssp HHHHHHHHHHHCCC---TTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHH
T ss_pred cchhHhhhhcccCc---cchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHH
Confidence 44556666666543 5779999999999998776543 1 25899999999999998776
Q ss_pred HHhhhccCCCCCCCCCceEEcccccC----CCCccEEEEcccccccCc------------chHHHHHHHHHhccCCeEE-
Q 020710 191 EEELLADNGGEAPVMPKFEVKDLESL----DGKYDTVVCLDVLIHYPQ------------SKADGMIAHLASLAEKRLI- 253 (322)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~d~~~~----~~~fD~V~~~~~l~~~~~------------~~~~~~l~~l~~~~~~~~i- 253 (322)
--++....+ .....+...+.... ..+||+|+++--+..-.. ..-..++.++.+.++++|.
T Consensus 227 ~l~~~~~~i---~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~ 303 (524)
T d2ar0a1 227 LLHDIEGNL---DHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRA 303 (524)
T ss_dssp HTTTCCCBG---GGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEE
T ss_pred Hhhcccccc---cccchhhhhhhhhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccccCcE
Confidence 544432100 00013344443322 467999999865521110 1112477777776655553
Q ss_pred EEECCC
Q 020710 254 LSFAPK 259 (322)
Q Consensus 254 l~~~~~ 259 (322)
..+.|.
T Consensus 304 aiIlP~ 309 (524)
T d2ar0a1 304 AVVVPD 309 (524)
T ss_dssp EEEEEH
T ss_pred EEEEeh
Confidence 334443
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.82 E-value=0.0011 Score=57.26 Aligned_cols=73 Identities=12% Similarity=0.002 Sum_probs=53.4
Q ss_pred hHHHHHHHHhhhc---CCCCCCeEEEECCCcccchHHHHhcC--CEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCC
Q 020710 132 KTVENTMQMLNDE---GSLKGIAVCDAGCGTGSLAIPLAKQG--AIVSASDISAAMVAEARKKAEEELLADNGGEAPVMP 206 (322)
Q Consensus 132 ~~~~~~~~~l~~~---~~~~~~~VLDvGcG~G~~~~~la~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~ 206 (322)
...+++++.+.-. ...++.+|||||.|.|.++..|.+.+ .+|+++|+++..++..++.+... ++
T Consensus 24 ~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~~~----~~------- 92 (322)
T d1i4wa_ 24 TVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEGS----PL------- 92 (322)
T ss_dssp HHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTTS----SC-------
T ss_pred HHHHHHHHHhcCCccccccCCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhccCC----Cc-------
Confidence 3456676665432 12356789999999999999999873 37999999999999988776432 12
Q ss_pred ceEEccccc
Q 020710 207 KFEVKDLES 215 (322)
Q Consensus 207 ~~~~~d~~~ 215 (322)
+++.+|+..
T Consensus 93 ~ii~~D~l~ 101 (322)
T d1i4wa_ 93 QILKRDPYD 101 (322)
T ss_dssp EEECSCTTC
T ss_pred EEEeCchhh
Confidence 677777653
|
| >d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HaeIII species: Haemophilus aegyptius [TaxId: 197575]
Probab=96.81 E-value=0.0088 Score=50.73 Aligned_cols=69 Identities=14% Similarity=0.189 Sum_probs=54.0
Q ss_pred CeEEEECCCcccchHHHHhcCCE-EEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC----CCCccEEE
Q 020710 150 IAVCDAGCGTGSLAIPLAKQGAI-VSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL----DGKYDTVV 224 (322)
Q Consensus 150 ~~VLDvGcG~G~~~~~la~~~~~-v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~~fD~V~ 224 (322)
.+|||+-||.|.+...|-+.|.+ +.++|+++.+++..+.++.. ....+|+.++ -...|+++
T Consensus 1 mk~~~lF~G~Gg~~~gl~~aG~~~~~a~e~d~~a~~~~~~N~~~--------------~~~~~Di~~~~~~~~~~~dll~ 66 (324)
T d1dcta_ 1 MNLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNHSA--------------KLIKGDISKISSDEFPKCDGII 66 (324)
T ss_dssp CEEEEESCSSCHHHHHHHHHTCEEEEEEECCHHHHHHHHHHCCS--------------EEEESCTTTSCGGGSCCCSEEE
T ss_pred CeEEEeCcCcCHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHCCC--------------CCccCChhhCCHhHcccccEEe
Confidence 47999999999999998888988 56999999988887776532 6677888776 25689999
Q ss_pred Eccccccc
Q 020710 225 CLDVLIHY 232 (322)
Q Consensus 225 ~~~~l~~~ 232 (322)
...-.+.+
T Consensus 67 ~g~PCq~f 74 (324)
T d1dcta_ 67 GGPPCQSW 74 (324)
T ss_dssp ECCCCTTT
T ss_pred eccccccc
Confidence 76544443
|
| >d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HhaI species: Haemophilus haemolyticus [TaxId: 726]
Probab=96.80 E-value=0.0094 Score=50.84 Aligned_cols=67 Identities=16% Similarity=0.089 Sum_probs=52.0
Q ss_pred CCCeEEEECCCcccchHHHHhcCCE-EEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC----CCCccE
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQGAI-VSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL----DGKYDT 222 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~~~~-v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~----~~~fD~ 222 (322)
.+.+|||+-||.|.+...|.+.|.+ +.++|+++.+++..+.++.+ ...+|+.+. -..+|+
T Consensus 10 ~~lrv~~lFsG~Gg~~~gl~~aG~~~v~a~e~d~~a~~~~~~N~~~---------------~~~~Di~~~~~~~~~~~Dl 74 (327)
T d2c7pa1 10 TGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGE---------------KPEGDITQVNEKTIPDHDI 74 (327)
T ss_dssp TTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHSC---------------CCBSCGGGSCGGGSCCCSE
T ss_pred CCCeEEEECccccHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHCCC---------------CCcCchhcCchhhcceeee
Confidence 5789999999999999999888987 56799999999988877642 224566554 256899
Q ss_pred EEEcccc
Q 020710 223 VVCLDVL 229 (322)
Q Consensus 223 V~~~~~l 229 (322)
++...-.
T Consensus 75 l~ggpPC 81 (327)
T d2c7pa1 75 LCAGFPC 81 (327)
T ss_dssp EEEECCC
T ss_pred eeccccc
Confidence 9975443
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=96.79 E-value=0.0013 Score=54.19 Aligned_cols=58 Identities=22% Similarity=0.223 Sum_probs=50.3
Q ss_pred chhHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhH
Q 020710 130 HSKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAE 191 (322)
Q Consensus 130 ~~~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~ 191 (322)
...+++++++.... ++..|||.-||+|..+....+.|.+.+|+|++++-++.|++++.
T Consensus 198 P~~L~~~lI~~~s~----~gd~VlDpF~GSGTT~~aa~~~~R~~ig~El~~~y~~~a~~Rl~ 255 (256)
T d1g60a_ 198 PRDLIERIIRASSN----PNDLVLDCFMGSGTTAIVAKKLGRNFIGCDMNAEYVNQANFVLN 255 (256)
T ss_dssp CHHHHHHHHHHHCC----TTCEEEESSCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH
T ss_pred chhHHHHHHHHhCC----CCCEEEECCCCchHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHc
Confidence 34566777777654 58999999999999999998999999999999999999999875
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=96.78 E-value=0.00053 Score=56.32 Aligned_cols=46 Identities=15% Similarity=0.081 Sum_probs=35.0
Q ss_pred HHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhc--CCEEEEEeCC
Q 020710 134 VENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ--GAIVSASDIS 179 (322)
Q Consensus 134 ~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~--~~~v~gvD~s 179 (322)
..++.++.......+..+|+|+|||.|.++.+++.+ ...|.|+|+-
T Consensus 52 ~~Kl~~~~~~~~~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG 99 (257)
T d2p41a1 52 SAKLRWFVERNLVTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKG 99 (257)
T ss_dssp HHHHHHHHHTTSSCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCC
T ss_pred HHHHHHHHHhcCccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEec
Confidence 345555555544567789999999999999999977 3578888873
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=96.68 E-value=0.0057 Score=45.10 Aligned_cols=97 Identities=19% Similarity=0.166 Sum_probs=58.3
Q ss_pred eEEEECCCcccchHHHHh----cCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-------CCC
Q 020710 151 AVCDAGCGTGSLAIPLAK----QGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------DGK 219 (322)
Q Consensus 151 ~VLDvGcG~G~~~~~la~----~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------~~~ 219 (322)
+|+=+|+ |.++..+++ .|.+|+.+|.+++.++.+.+.+ + ..++.+|..+. -..
T Consensus 2 ~IvI~G~--G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~---~-----------~~vi~Gd~~~~~~l~~~~i~~ 65 (132)
T d1lssa_ 2 YIIIAGI--GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEI---D-----------ALVINGDCTKIKTLEDAGIED 65 (132)
T ss_dssp EEEEECC--SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC---S-----------SEEEESCTTSHHHHHHTTTTT
T ss_pred EEEEECC--CHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhh---h-----------hhhccCcccchhhhhhcChhh
Confidence 5666666 556555554 4899999999999888765542 1 17888998775 367
Q ss_pred ccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEECCChhhHHHHHH
Q 020710 220 YDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFYYDLLKR 268 (322)
Q Consensus 220 fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~ 268 (322)
.|.+++. .++++..-+...+.+..+..-++....+..+...+..
T Consensus 66 a~~vv~~-----t~~d~~N~~~~~~~k~~~~~~iI~~~~~~~~~~~l~~ 109 (132)
T d1lssa_ 66 ADMYIAV-----TGKEEVNLMSSLLAKSYGINKTIARISEIEYKDVFER 109 (132)
T ss_dssp CSEEEEC-----CSCHHHHHHHHHHHHHTTCCCEEEECSSTTHHHHHHH
T ss_pred hhhhccc-----CCcHHHHHHHHHHHHHcCCceEEEEecCHHHHHHHHH
Confidence 8988874 3344444444444444443344444333333333333
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=96.67 E-value=0.0012 Score=56.29 Aligned_cols=59 Identities=15% Similarity=0.128 Sum_probs=51.0
Q ss_pred chhHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHH
Q 020710 130 HSKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEE 192 (322)
Q Consensus 130 ~~~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~ 192 (322)
...++++++..... ++..|||.-||+|..+....+.|.+.+|+|++++.++.+++++.+
T Consensus 236 P~~L~~rlI~~~s~----~gdiVlDpF~GSGTT~~AA~~lgR~~Ig~El~~~y~~~a~~Rl~~ 294 (320)
T d1booa_ 236 PAKLPEFFIRMLTE----PDDLVVDIFGGSNTTGLVAERESRKWISFEMKPEYVAASAFRFLD 294 (320)
T ss_dssp CTHHHHHHHHHHCC----TTCEEEETTCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHGGGSC
T ss_pred chHHHHHhhhhccc----CCCEEEecCCCCcHHHHHHHHcCCcEEEEeCCHHHHHHHHHHHHh
Confidence 44677777776654 589999999999999999999999999999999999999988754
|
| >d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: ML2640-like domain: Putative methyltransferase ML2640 species: Mycobacterium leprae [TaxId: 1769]
Probab=96.64 E-value=0.012 Score=49.83 Aligned_cols=150 Identities=16% Similarity=0.143 Sum_probs=85.0
Q ss_pred CCeEEEECCCcccchHHHHhc-CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC------C----
Q 020710 149 GIAVCDAGCGTGSLAIPLAKQ-GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL------D---- 217 (322)
Q Consensus 149 ~~~VLDvGcG~G~~~~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~------~---- 217 (322)
...|+.+|||.-.-...+... +.+++=||. |++++.-++.+.+.+.... .+..++..|+.+. .
T Consensus 90 ~~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~-p~vi~~K~~~l~~~~~~~~-----~~~~~v~~Dl~~~~~~~L~~~g~d 163 (297)
T d2uyoa1 90 IRQFVILASGLDSRAYRLDWPTGTTVYEIDQ-PKVLAYKSTTLAEHGVTPT-----ADRREVPIDLRQDWPPALRSAGFD 163 (297)
T ss_dssp CCEEEEETCTTCCHHHHSCCCTTCEEEEEEC-HHHHHHHHHHHHHTTCCCS-----SEEEEEECCTTSCHHHHHHHTTCC
T ss_pred CCeEEEeCcccCChhhhcCCCcCceEEEcCC-hHHHHHHHHHHHhcCCCCC-----ceEEEecccccchHHHHHHhcCCC
Confidence 346777999987776665322 667888885 8888877777776543221 1125566666542 1
Q ss_pred -CCccEEEEcccccccCcchHHHHHHHHHhccCCeE--EEEECCCh---hhHHHH---HHhhccCCC-C-C--Ccccccc
Q 020710 218 -GKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRL--ILSFAPKT---FYYDLL---KRVGELFPG-P-S--KATRAYL 284 (322)
Q Consensus 218 -~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~--il~~~~~~---~~~~~~---~~~~~~~~~-~-~--~~~~~~~ 284 (322)
+.-=++++-.++++++.+....+++.+..+..+|. ++...+.. ...... ......... . . .....+.
T Consensus 164 ~~~ptl~i~EGvl~YL~~~~~~~ll~~i~~~~~~GS~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (297)
T d2uyoa1 164 PSARTAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVETSPLHGDEWREQMQLRFRRVSDALGFEQAVDVQELIYHD 243 (297)
T ss_dssp TTSCEEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEECCCTTCSHHHHHHHHHHHHHHC-----------CCTTCC
T ss_pred CCCCEEEEEccccccCCHHHHHHHHHHHHHhCCCCCEEEEEecccccchhHHHHHHHHHHHHhhhccccCCChHhhccCC
Confidence 22334555557888998889999999999764443 33333211 111111 111111100 0 0 0001112
Q ss_pred CCHHHHHHHHHHCCCEEEEE
Q 020710 285 HAEADVERALQKVGWKIRKR 304 (322)
Q Consensus 285 ~~~~~~~~~l~~aGf~vv~~ 304 (322)
..+.++..+|.+.||++...
T Consensus 244 ~~~~~~~~~l~~~Gw~~~~~ 263 (297)
T d2uyoa1 244 ENRAVVADWLNRHGWRATAQ 263 (297)
T ss_dssp TTCCCHHHHHTTTTEEEEEE
T ss_pred CchhhHHHHHHhCCCEEEEe
Confidence 24567899999999987764
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=96.54 E-value=0.011 Score=45.31 Aligned_cols=50 Identities=26% Similarity=0.309 Sum_probs=39.0
Q ss_pred hhhcCCCCCCeEEEECCC-cccchHHHHhc-CCEEEEEeCCHHHHHHHHHHh
Q 020710 141 LNDEGSLKGIAVCDAGCG-TGSLAIPLAKQ-GAIVSASDISAAMVAEARKKA 190 (322)
Q Consensus 141 l~~~~~~~~~~VLDvGcG-~G~~~~~la~~-~~~v~gvD~s~~~l~~a~~~~ 190 (322)
+...+..++.+||-+||| .|.++..+++. |++|+++|.+++-++.+++..
T Consensus 19 ~~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~~g 70 (170)
T d1e3ja2 19 CRRAGVQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCG 70 (170)
T ss_dssp HHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT
T ss_pred HHHhCCCCCCEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHHHcC
Confidence 333345678999999999 56667767766 999999999999988887653
|
| >d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNMT2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.40 E-value=0.017 Score=49.37 Aligned_cols=72 Identities=14% Similarity=0.181 Sum_probs=52.4
Q ss_pred CCeEEEECCCcccchHHHHhcCC--E-EEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC------CCC
Q 020710 149 GIAVCDAGCGTGSLAIPLAKQGA--I-VSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL------DGK 219 (322)
Q Consensus 149 ~~~VLDvGcG~G~~~~~la~~~~--~-v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~------~~~ 219 (322)
+.+|+|+-||.|.+...|...|. + +.++|+++.+++..+.++... .++++|+.+. ...
T Consensus 2 p~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~~n~~~~-------------~~~~~di~~~~~~~~~~~~ 68 (343)
T d1g55a_ 2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPHT-------------QLLAKTIEGITLEEFDRLS 68 (343)
T ss_dssp CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTTS-------------CEECSCGGGCCHHHHHHHC
T ss_pred CCEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHHHHCCCC-------------CcccCchhhCCHhHcCCCC
Confidence 57899999999999988877775 4 679999999988887765421 5677787765 246
Q ss_pred ccEEEEcccccccC
Q 020710 220 YDTVVCLDVLIHYP 233 (322)
Q Consensus 220 fD~V~~~~~l~~~~ 233 (322)
.|+++...-...+.
T Consensus 69 ~Dll~ggpPCq~fS 82 (343)
T d1g55a_ 69 FDMILMSPPCQPFT 82 (343)
T ss_dssp CSEEEECCC-----
T ss_pred ccEEEeeccccccc
Confidence 89999866555544
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=96.38 E-value=0.0029 Score=52.74 Aligned_cols=60 Identities=18% Similarity=0.170 Sum_probs=51.1
Q ss_pred chhHHHHHHHHhhhcCCCCCCeEEEECCCcccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHh
Q 020710 130 HSKTVENTMQMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEE 193 (322)
Q Consensus 130 ~~~~~~~~~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~ 193 (322)
...+++++++.... ++..|||.-||+|..+....+.|.+.+|+|+++..++.+++++...
T Consensus 193 P~~L~~~~I~~~s~----~gdiVLDpF~GSGTT~~Aa~~lgR~~ig~El~~~y~~~a~~Ri~~~ 252 (279)
T d1eg2a_ 193 PAAVIERLVRALSH----PGSTVLDFFAGSGVTARVAIQEGRNSICTDAAPVFKEYYQKQLTFL 252 (279)
T ss_dssp CHHHHHHHHHHHSC----TTCEEEETTCTTCHHHHHHHHHTCEEEEEESSTHHHHHHHHHHHHC
T ss_pred chhHHHHHHHhhcC----CCCEEEecCCCCcHHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHh
Confidence 44566777766543 5899999999999999988888999999999999999999998753
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=96.18 E-value=0.011 Score=45.48 Aligned_cols=46 Identities=33% Similarity=0.264 Sum_probs=35.7
Q ss_pred cCCCCCCeEEEECCC-cccchHHHHhc-CCEEEEEeCCHHHHHHHHHH
Q 020710 144 EGSLKGIAVCDAGCG-TGSLAIPLAKQ-GAIVSASDISAAMVAEARKK 189 (322)
Q Consensus 144 ~~~~~~~~VLDvGcG-~G~~~~~la~~-~~~v~gvD~s~~~l~~a~~~ 189 (322)
.+..++.+||=+||| .|.++..+++. |++++++|.+++-++.+++.
T Consensus 26 ~~~~~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~~l 73 (168)
T d1uufa2 26 WQAGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKAL 73 (168)
T ss_dssp TTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHH
T ss_pred hCCCCCCEEEEeccchHHHHHHHHhhcccccchhhccchhHHHHHhcc
Confidence 334678999999997 46677777776 99999999999877776644
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.09 E-value=0.0064 Score=46.82 Aligned_cols=45 Identities=29% Similarity=0.268 Sum_probs=37.6
Q ss_pred CCCCCCeEEEECCC-cccchHHHHhc-CCEEEEEeCCHHHHHHHHHH
Q 020710 145 GSLKGIAVCDAGCG-TGSLAIPLAKQ-GAIVSASDISAAMVAEARKK 189 (322)
Q Consensus 145 ~~~~~~~VLDvGcG-~G~~~~~la~~-~~~v~gvD~s~~~l~~a~~~ 189 (322)
+..++.+||-+||| .|.++..+++. |++|+++|.|++.++.+++.
T Consensus 24 ~~~~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~l 70 (168)
T d1piwa2 24 GCGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKM 70 (168)
T ss_dssp TCSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHH
T ss_pred CcCCCCEEEEECCCCcchhHHHHhhhccccccccccchhHHHHhhcc
Confidence 34678999999999 67777777766 99999999999988888764
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.98 E-value=0.025 Score=43.05 Aligned_cols=44 Identities=36% Similarity=0.421 Sum_probs=34.8
Q ss_pred CCCCCeEEEECCCc-ccchHHHHhc-CCEEEEEeCCHHHHHHHHHH
Q 020710 146 SLKGIAVCDAGCGT-GSLAIPLAKQ-GAIVSASDISAAMVAEARKK 189 (322)
Q Consensus 146 ~~~~~~VLDvGcG~-G~~~~~la~~-~~~v~gvD~s~~~l~~a~~~ 189 (322)
..++.+||=+|||. |..+..+++. |++|+++|.+++-++.+++.
T Consensus 25 ~~~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~~~ 70 (166)
T d1llua2 25 ARPGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELARKL 70 (166)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT
T ss_pred CCCCCEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhhhcc
Confidence 45788999999984 5556666665 89999999999988887654
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=95.82 E-value=0.016 Score=44.26 Aligned_cols=86 Identities=17% Similarity=0.153 Sum_probs=56.9
Q ss_pred CeEEEECCC--cccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccCCCCccEEEEcc
Q 020710 150 IAVCDAGCG--TGSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESLDGKYDTVVCLD 227 (322)
Q Consensus 150 ~~VLDvGcG--~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~fD~V~~~~ 227 (322)
++|.=||+| .+.++..|.+.|.+|++.|.+++.++.+++. +.. .....+.+ .-...|+|+.
T Consensus 1 MkI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~~----~~~----------~~~~~~~~-~~~~~DiIil-- 63 (165)
T d2f1ka2 1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVER----QLV----------DEAGQDLS-LLQTAKIIFL-- 63 (165)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHT----TSC----------SEEESCGG-GGTTCSEEEE--
T ss_pred CEEEEEeecHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHh----hcc----------ceeeeecc-cccccccccc--
Confidence 357778988 4456677778899999999999887776542 211 11222222 2356799985
Q ss_pred cccccCcchHHHHHHHHHhccCCeEEEE
Q 020710 228 VLIHYPQSKADGMIAHLASLAEKRLILS 255 (322)
Q Consensus 228 ~l~~~~~~~~~~~l~~l~~~~~~~~il~ 255 (322)
.+|......+++++...++++.++.
T Consensus 64 ---avp~~~~~~vl~~l~~~l~~~~iv~ 88 (165)
T d2f1ka2 64 ---CTPIQLILPTLEKLIPHLSPTAIVT 88 (165)
T ss_dssp ---CSCHHHHHHHHHHHGGGSCTTCEEE
T ss_pred ---cCcHhhhhhhhhhhhhhccccccee
Confidence 4455567889999988765555443
|
| >d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RPA4359-like domain: Hypothetical protein RPA4359 species: Rhodopseudomonas palustris [TaxId: 1076]
Probab=95.63 E-value=0.022 Score=49.59 Aligned_cols=53 Identities=9% Similarity=0.189 Sum_probs=37.0
Q ss_pred HHhhhcCCCCCCeEEEECCCcccchHHHHhc---------CCEEEEEeCCHHHHHHHHHHhH
Q 020710 139 QMLNDEGSLKGIAVCDAGCGTGSLAIPLAKQ---------GAIVSASDISAAMVAEARKKAE 191 (322)
Q Consensus 139 ~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~---------~~~v~gvD~s~~~l~~a~~~~~ 191 (322)
+.+...+..+..+|+|+|+|+|.++..+.+. ..+++.+|+|+.+.+.-++++.
T Consensus 70 ~~~~~~~~~~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~l~ 131 (365)
T d1zkda1 70 SVWKAADEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLA 131 (365)
T ss_dssp HHHHHTTCCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHST
T ss_pred HHHHHhCCCccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHHHhc
Confidence 3333333334568999999999998776542 3468999999987766655544
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.56 E-value=0.053 Score=41.38 Aligned_cols=45 Identities=31% Similarity=0.415 Sum_probs=34.3
Q ss_pred CCCCCCeEEEECCCccc-chHHHHhc-CC-EEEEEeCCHHHHHHHHHH
Q 020710 145 GSLKGIAVCDAGCGTGS-LAIPLAKQ-GA-IVSASDISAAMVAEARKK 189 (322)
Q Consensus 145 ~~~~~~~VLDvGcG~G~-~~~~la~~-~~-~v~gvD~s~~~l~~a~~~ 189 (322)
+..++.+||=+|||... ++..+++. |+ +|+++|.+++-++.+++.
T Consensus 23 ~~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~ 70 (171)
T d1pl8a2 23 GVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEI 70 (171)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT
T ss_pred CCCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHh
Confidence 34578899999998544 44555554 77 799999999998888754
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=95.40 E-value=0.044 Score=42.21 Aligned_cols=45 Identities=27% Similarity=0.234 Sum_probs=37.2
Q ss_pred CCCCCCeEEEECCCc-ccchHHHHhc-CC-EEEEEeCCHHHHHHHHHH
Q 020710 145 GSLKGIAVCDAGCGT-GSLAIPLAKQ-GA-IVSASDISAAMVAEARKK 189 (322)
Q Consensus 145 ~~~~~~~VLDvGcG~-G~~~~~la~~-~~-~v~gvD~s~~~l~~a~~~ 189 (322)
...++.+||=+|||. |.++..+++. |+ +|+++|.+++-++.+++.
T Consensus 24 ~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~l 71 (174)
T d1jqba2 24 DIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFY 71 (174)
T ss_dssp TCCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHH
T ss_pred CCCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhh
Confidence 345788999999996 7888888887 76 699999999988888654
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=95.36 E-value=0.038 Score=43.46 Aligned_cols=46 Identities=35% Similarity=0.463 Sum_probs=36.4
Q ss_pred CCCCCCeEEEECCCc-ccchHHHHhc-CC-EEEEEeCCHHHHHHHHHHh
Q 020710 145 GSLKGIAVCDAGCGT-GSLAIPLAKQ-GA-IVSASDISAAMVAEARKKA 190 (322)
Q Consensus 145 ~~~~~~~VLDvGcG~-G~~~~~la~~-~~-~v~gvD~s~~~l~~a~~~~ 190 (322)
+..++.+||-+|||. |..+..+++. |+ +|+++|.+++.++.|++.-
T Consensus 22 ~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~G 70 (195)
T d1kola2 22 GVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQG 70 (195)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTT
T ss_pred CCCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhcc
Confidence 346789999999997 5566666655 55 7999999999998887653
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=95.24 E-value=0.025 Score=41.40 Aligned_cols=96 Identities=15% Similarity=0.134 Sum_probs=55.9
Q ss_pred EEEECCCcccchHHHH----hcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-------CCCc
Q 020710 152 VCDAGCGTGSLAIPLA----KQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------DGKY 220 (322)
Q Consensus 152 VLDvGcG~G~~~~~la----~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------~~~f 220 (322)
++=+|+ |.++..++ +.|.+|+.+|.+++.++.++.. +. ..+.+|..+. -...
T Consensus 3 ~iIiG~--G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~~----~~-----------~~~~gd~~~~~~l~~a~i~~a 65 (134)
T d2hmva1 3 FAVIGL--GRFGGSIVKELHRMGHEVLAVDINEEKVNAYASY----AT-----------HAVIANATEENELLSLGIRNF 65 (134)
T ss_dssp EEEECC--SHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTTT----CS-----------EEEECCTTCTTHHHHHTGGGC
T ss_pred EEEECC--CHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHHh----CC-----------cceeeecccchhhhccCCccc
Confidence 455555 55555554 4599999999999988876432 11 5677887665 2467
Q ss_pred cEEEEcccccccCcc-hHHHHHHHHHhccCCeEEEEECCChhhHHHHHHh
Q 020710 221 DTVVCLDVLIHYPQS-KADGMIAHLASLAEKRLILSFAPKTFYYDLLKRV 269 (322)
Q Consensus 221 D~V~~~~~l~~~~~~-~~~~~l~~l~~~~~~~~il~~~~~~~~~~~~~~~ 269 (322)
|.|++. ++++ ....+...+++..+..-++.-..+..+...++.+
T Consensus 66 ~~vi~~-----~~~~~~~~~~~~~~~~~~~~~~iiar~~~~~~~~~l~~~ 110 (134)
T d2hmva1 66 EYVIVA-----IGANIQASTLTTLLLKELDIPNIWVKAQNYYHHKVLEKI 110 (134)
T ss_dssp SEEEEC-----CCSCHHHHHHHHHHHHHTTCSEEEEECCSHHHHHHHHHH
T ss_pred cEEEEE-----cCchHHhHHHHHHHHHHcCCCcEEeecccHhHHHHHHHC
Confidence 877753 3332 2334455555555555555554444444444443
|
| >d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase AviRa domain: rRNA methyltransferase AviRa species: Streptomyces viridochromogenes [TaxId: 1938]
Probab=95.19 E-value=0.011 Score=48.53 Aligned_cols=101 Identities=17% Similarity=0.083 Sum_probs=68.2
Q ss_pred CCCCeEEEECCCcccchHHHHhc------------------------------------------CCEEEEEeCCHHHHH
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQ------------------------------------------GAIVSASDISAAMVA 184 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~------------------------------------------~~~v~gvD~s~~~l~ 184 (322)
..+..++|--||+|.+.+..+-. ...++|.|+++.+++
T Consensus 49 ~~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~~~i~G~D~d~~ai~ 128 (249)
T d1o9ga_ 49 DGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQ 128 (249)
T ss_dssp CSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred CCCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccccCCccccccCHHHHH
Confidence 34567999999999998776431 124578888888888
Q ss_pred HHH---HHhHHhhhccCCCCCCCCCceEEcccccC--------CCCccEEEEcccccc-cC------cchHHHHHHHHHh
Q 020710 185 EAR---KKAEEELLADNGGEAPVMPKFEVKDLESL--------DGKYDTVVCLDVLIH-YP------QSKADGMIAHLAS 246 (322)
Q Consensus 185 ~a~---~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--------~~~fD~V~~~~~l~~-~~------~~~~~~~l~~l~~ 246 (322)
.|+ +++...++...+ .+.+.|+.+. +..+++|+|+--.-. +. .+.+.++...+++
T Consensus 129 ~A~~~r~n~~~Agl~~~i-------~i~~~d~f~~~~~~~~~~~~~~GlIVtNPPYGERl~~~~~~~~~~~~~~~~~l~~ 201 (249)
T d1o9ga_ 129 AARRLRERLTAEGGALPC-------AIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLAS 201 (249)
T ss_dssp HHHHHHHHHHHTTSSCCE-------EEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcee-------eeeecchhccCcchhccCCCCCCEEEeCCCccccccccccchHHHHHHHHHHHHc
Confidence 884 466666665533 7788887653 466899999764432 21 1235677777888
Q ss_pred ccCCeEEE
Q 020710 247 LAEKRLIL 254 (322)
Q Consensus 247 ~~~~~~il 254 (322)
.+++.-++
T Consensus 202 ~~p~~s~~ 209 (249)
T d1o9ga_ 202 ALPAHAVI 209 (249)
T ss_dssp HSCTTCEE
T ss_pred cCCCCcEE
Confidence 76555433
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=94.88 E-value=0.076 Score=43.57 Aligned_cols=76 Identities=28% Similarity=0.211 Sum_probs=58.4
Q ss_pred CCCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-------
Q 020710 147 LKGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL------- 216 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~------- 216 (322)
.+++++|=.|+..|. .+..|++.|++|+.+|.+++-++.+.+.+...+... .++..|+.+.
T Consensus 4 L~gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~~~l~~~~~~~~~~~~~~---------~~~~~D~s~~~~~~~~~ 74 (258)
T d1ae1a_ 4 LKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGLNV---------EGSVCDLLSRTERDKLM 74 (258)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCE---------EEEECCTTCHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCc---------eEEEeecCCHHHHHHHH
Confidence 468899999998774 456677789999999999998888888777655433 6788888664
Q ss_pred -------CCCccEEEEcccccc
Q 020710 217 -------DGKYDTVVCLDVLIH 231 (322)
Q Consensus 217 -------~~~fD~V~~~~~l~~ 231 (322)
.+..|+++.+..+.+
T Consensus 75 ~~~~~~~~g~idilinnag~~~ 96 (258)
T d1ae1a_ 75 QTVAHVFDGKLNILVNNAGVVI 96 (258)
T ss_dssp HHHHHHTTSCCCEEEECCCCCC
T ss_pred HHHHHHhCCCcEEEeccccccc
Confidence 367899988665544
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=94.83 E-value=0.038 Score=42.13 Aligned_cols=87 Identities=18% Similarity=0.210 Sum_probs=55.5
Q ss_pred eEEEECCCc--ccchHHHHhcCC--EEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-CCCccEEEE
Q 020710 151 AVCDAGCGT--GSLAIPLAKQGA--IVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-DGKYDTVVC 225 (322)
Q Consensus 151 ~VLDvGcG~--G~~~~~la~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~fD~V~~ 225 (322)
+|+=||||. |.++..|.+.|. +|+++|.+++.++.+++.. .. .....+.... +...|+|+.
T Consensus 3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~----~~----------~~~~~~~~~~~~~~~dlIil 68 (171)
T d2g5ca2 3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLG----II----------DEGTTSIAKVEDFSPDFVML 68 (171)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTT----SC----------SEEESCGGGGGGTCCSEEEE
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhh----cc----------hhhhhhhhhhhccccccccc
Confidence 588899984 334556666664 7999999999988876542 11 2222232222 456899985
Q ss_pred cccccccCcchHHHHHHHHHhccCCeE-EEEE
Q 020710 226 LDVLIHYPQSKADGMIAHLASLAEKRL-ILSF 256 (322)
Q Consensus 226 ~~~l~~~~~~~~~~~l~~l~~~~~~~~-il~~ 256 (322)
..|......+++.+...++.+. ++++
T Consensus 69 -----a~p~~~~~~vl~~l~~~~~~~~ii~d~ 95 (171)
T d2g5ca2 69 -----SSPVRTFREIAKKLSYILSEDATVTDQ 95 (171)
T ss_dssp -----CSCHHHHHHHHHHHHHHSCTTCEEEEC
T ss_pred -----cCCchhhhhhhhhhhcccccccccccc
Confidence 4444456788888887665554 4444
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.78 E-value=0.049 Score=44.75 Aligned_cols=77 Identities=16% Similarity=0.068 Sum_probs=59.0
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
+++.+|=-|++.|. .+..|++.|++|+.+|.+++.++.+.+.+...+...++ .++.+|+.+.
T Consensus 9 k~Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~-------~~~~~Dls~~~~v~~~v~ 81 (257)
T d1xg5a_ 9 RDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTL-------IPYRCDLSNEEDILSMFS 81 (257)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEE-------EEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceE-------EEEEccCCCHHHHHHHHH
Confidence 47889999998876 34556677999999999999999888887766543332 6788998774
Q ss_pred -----CCCccEEEEcccccc
Q 020710 217 -----DGKYDTVVCLDVLIH 231 (322)
Q Consensus 217 -----~~~fD~V~~~~~l~~ 231 (322)
-+..|+++.+....+
T Consensus 82 ~~~~~~g~iD~lVnnAg~~~ 101 (257)
T d1xg5a_ 82 AIRSQHSGVDICINNAGLAR 101 (257)
T ss_dssp HHHHHHCCCSEEEECCCCCC
T ss_pred HHHHhcCCCCEEEecccccC
Confidence 378999998765543
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.72 E-value=0.097 Score=39.47 Aligned_cols=45 Identities=31% Similarity=0.296 Sum_probs=33.6
Q ss_pred CCCCCCeEEEECCCccc-chHHHHhc-CCEEEEEeCCHHHHHHHHHH
Q 020710 145 GSLKGIAVCDAGCGTGS-LAIPLAKQ-GAIVSASDISAAMVAEARKK 189 (322)
Q Consensus 145 ~~~~~~~VLDvGcG~G~-~~~~la~~-~~~v~gvD~s~~~l~~a~~~ 189 (322)
+..++.+||=.|||.-. ....+++. |++|+++|.+++-++.+++.
T Consensus 24 ~~~~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~~ 70 (168)
T d1rjwa2 24 GAKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKEL 70 (168)
T ss_dssp TCCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHT
T ss_pred CCCCCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhhhc
Confidence 34578899999998544 44444554 88999999999988877653
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=94.64 E-value=0.042 Score=42.44 Aligned_cols=43 Identities=26% Similarity=0.290 Sum_probs=35.6
Q ss_pred CCCCeEEEECCC-cccchHHHHhc-CC-EEEEEeCCHHHHHHHHHH
Q 020710 147 LKGIAVCDAGCG-TGSLAIPLAKQ-GA-IVSASDISAAMVAEARKK 189 (322)
Q Consensus 147 ~~~~~VLDvGcG-~G~~~~~la~~-~~-~v~gvD~s~~~l~~a~~~ 189 (322)
.++.+||-+||| .|.+...+++. |+ +|+++|.+++.++.+++.
T Consensus 27 ~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~l 72 (182)
T d1vj0a2 27 FAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEI 72 (182)
T ss_dssp CBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHT
T ss_pred CCCCEEEEECCCccchhheecccccccccccccccccccccccccc
Confidence 568999999998 47777777776 87 799999999999888654
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.34 E-value=0.44 Score=36.88 Aligned_cols=108 Identities=20% Similarity=0.190 Sum_probs=64.0
Q ss_pred CeEEEECCCccc--chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhh--ccCCCCCCC----------CCce-EEcccc
Q 020710 150 IAVCDAGCGTGS--LAIPLAKQGAIVSASDISAAMVAEARKKAEEELL--ADNGGEAPV----------MPKF-EVKDLE 214 (322)
Q Consensus 150 ~~VLDvGcG~G~--~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~--~~~~~~~~~----------~~~~-~~~d~~ 214 (322)
.+|-=||+|+=. ++..++..|++|+.+|.+++.++.++++..+.-. ..+...... ...+ ...|..
T Consensus 5 kkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~d~~ 84 (192)
T d1f0ya2 5 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTDAA 84 (192)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEESCHH
T ss_pred EEEEEECcCHHHHHHHHHHHhCCCcEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhccccchhH
Confidence 578889998533 3445556699999999999999988877653210 000000000 0001 122222
Q ss_pred cCCCCccEEEEcccccccCcc--hHHHHHHHHHhccCCeEEEEECCChhh
Q 020710 215 SLDGKYDTVVCLDVLIHYPQS--KADGMIAHLASLAEKRLILSFAPKTFY 262 (322)
Q Consensus 215 ~~~~~fD~V~~~~~l~~~~~~--~~~~~l~~l~~~~~~~~il~~~~~~~~ 262 (322)
+.-...|+|+- -++.+ ...++++++.+..++..++..+..++.
T Consensus 85 ~a~~~ad~ViE-----av~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~ 129 (192)
T d1f0ya2 85 SVVHSTDLVVE-----AIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQ 129 (192)
T ss_dssp HHTTSCSEEEE-----CCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSSC
T ss_pred hhhcccceehh-----hcccchhHHHHHHHHHhhhcccCceeeccCcccc
Confidence 22355788873 44432 145889999998888888877665544
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=94.29 E-value=0.031 Score=42.71 Aligned_cols=95 Identities=16% Similarity=0.145 Sum_probs=59.8
Q ss_pred CCCeEEEECCCc-ccchHHHHhc-CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC---CCCccE
Q 020710 148 KGIAVCDAGCGT-GSLAIPLAKQ-GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL---DGKYDT 222 (322)
Q Consensus 148 ~~~~VLDvGcG~-G~~~~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~fD~ 222 (322)
++.+|+=||+|. |..+...+.. |++|+..|.+++.++..+..+.... ++...+-+.+ -...|+
T Consensus 31 ~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~~~------------~~~~~~~~~l~~~~~~aDi 98 (168)
T d1pjca1 31 KPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRV------------ELLYSNSAEIETAVAEADL 98 (168)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGS------------EEEECCHHHHHHHHHTCSE
T ss_pred CCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhcccc------------eeehhhhhhHHHhhccCcE
Confidence 578999999995 5556666655 9999999999998887776654321 3433332222 356899
Q ss_pred EEEcccccccCcchH--HHHHHHHHhccCCeEEEEEC
Q 020710 223 VVCLDVLIHYPQSKA--DGMIAHLASLAEKRLILSFA 257 (322)
Q Consensus 223 V~~~~~l~~~~~~~~--~~~l~~l~~~~~~~~il~~~ 257 (322)
|++.-.+---+.|.+ +++++.+ .++.+|+++.
T Consensus 99 vI~aalipG~~aP~lIt~~mv~~M---k~GSVIVDva 132 (168)
T d1pjca1 99 LIGAVLVPGRRAPILVPASLVEQM---RTGSVIVDVA 132 (168)
T ss_dssp EEECCCCTTSSCCCCBCHHHHTTS---CTTCEEEETT
T ss_pred EEEeeecCCcccCeeecHHHHhhc---CCCcEEEEee
Confidence 998765433222331 2344333 3566677654
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.21 E-value=0.063 Score=41.07 Aligned_cols=43 Identities=19% Similarity=0.156 Sum_probs=34.6
Q ss_pred CCCCCeEEEECC--CcccchHHHHhc-CCEEEEEeCCHHHHHHHHH
Q 020710 146 SLKGIAVCDAGC--GTGSLAIPLAKQ-GAIVSASDISAAMVAEARK 188 (322)
Q Consensus 146 ~~~~~~VLDvGc--G~G~~~~~la~~-~~~v~gvD~s~~~l~~a~~ 188 (322)
..++.+||-.|+ |.|..+..+++. |++|++++-+++..+.+++
T Consensus 26 ~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~ 71 (174)
T d1yb5a2 26 VKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQ 71 (174)
T ss_dssp CCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred CCCCCEEEEEeccccccccccccccccCcccccccccccccccccc
Confidence 457889999997 467777778876 9999999989887777654
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.20 E-value=0.14 Score=41.53 Aligned_cols=78 Identities=21% Similarity=0.099 Sum_probs=60.0
Q ss_pred CCCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-------
Q 020710 147 LKGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL------- 216 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~------- 216 (322)
..++.+|=-|++.|. .+..|++.|++|+.+|.+++.++...+.+...+... .++.+|+.+.
T Consensus 5 l~Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~~l~~~~~~~~~~~~~~---------~~~~~Dvs~~~~v~~~~ 75 (244)
T d1yb1a_ 5 VTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLGAKV---------HTFVVDCSNREDIYSSA 75 (244)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCE---------EEEECCTTCHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcE---------EEEEeeCCCHHHHHHHH
Confidence 357788888988876 456677789999999999999988888776654322 7888898775
Q ss_pred ------CCCccEEEEcccccccC
Q 020710 217 ------DGKYDTVVCLDVLIHYP 233 (322)
Q Consensus 217 ------~~~fD~V~~~~~l~~~~ 233 (322)
.+..|+++.+..+.+..
T Consensus 76 ~~i~~~~g~idilinnag~~~~~ 98 (244)
T d1yb1a_ 76 KKVKAEIGDVSILVNNAGVVYTS 98 (244)
T ss_dssp HHHHHHTCCCSEEEECCCCCCCC
T ss_pred HHHHHHcCCCceeEeeccccccc
Confidence 57899999887665443
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=94.19 E-value=0.17 Score=38.31 Aligned_cols=45 Identities=22% Similarity=0.343 Sum_probs=33.9
Q ss_pred CCCCCCeEEEECCC--cccchHHHHhc-C-CEEEEEeCCHHHHHHHHHH
Q 020710 145 GSLKGIAVCDAGCG--TGSLAIPLAKQ-G-AIVSASDISAAMVAEARKK 189 (322)
Q Consensus 145 ~~~~~~~VLDvGcG--~G~~~~~la~~-~-~~v~gvD~s~~~l~~a~~~ 189 (322)
+..++.+||=+||+ .|..+..+++. | .+|+++|.+++-++.+++.
T Consensus 24 ~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~ 72 (170)
T d1jvba2 24 SLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRA 72 (170)
T ss_dssp TCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHH
T ss_pred CCCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHc
Confidence 34578899999973 55556666655 6 5899999999988888764
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.00 E-value=0.11 Score=42.39 Aligned_cols=79 Identities=19% Similarity=0.179 Sum_probs=56.9
Q ss_pred CCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC---------
Q 020710 149 GIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL--------- 216 (322)
Q Consensus 149 ~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--------- 216 (322)
++.+|=-|++.|. .+..|++.|++|+.+|.+++.++.+.+.+.+.....+ +.++..|+.+.
T Consensus 3 GKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~-------~~~~~~Dv~~~~~v~~~~~~ 75 (254)
T d2gdza1 3 GKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQK-------TLFIQCDVADQQQLRDTFRK 75 (254)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCGGG-------EEEEECCTTSHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCCc-------EEEEEeecCCHHHHHHHHHH
Confidence 6788888887765 3455667799999999999888877766654322222 27788898774
Q ss_pred ----CCCccEEEEcccccccCc
Q 020710 217 ----DGKYDTVVCLDVLIHYPQ 234 (322)
Q Consensus 217 ----~~~fD~V~~~~~l~~~~~ 234 (322)
-+..|+++.+.......+
T Consensus 76 ~~~~~G~iDilVnnAg~~~~~~ 97 (254)
T d2gdza1 76 VVDHFGRLDILVNNAGVNNEKN 97 (254)
T ss_dssp HHHHHSCCCEEEECCCCCCSSS
T ss_pred HHHHcCCcCeeccccccccccc
Confidence 378999998877765543
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=93.73 E-value=0.14 Score=41.70 Aligned_cols=75 Identities=15% Similarity=0.044 Sum_probs=56.3
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
+++.+|=-|++.|. .+..|++.|++|+.+|.+++.++.+.+.+...+... .++..|+.+.
T Consensus 9 enKvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~g~~~---------~~~~~Dvt~~~~v~~~~~ 79 (251)
T d2c07a1 9 ENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFGYES---------SGYAGDVSKKEEISEVIN 79 (251)
T ss_dssp SSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTTCCE---------EEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCcE---------EEEEccCCCHHHHHHHHH
Confidence 57788888887764 345556669999999999999988888776654332 7888898764
Q ss_pred -----CCCccEEEEcccccc
Q 020710 217 -----DGKYDTVVCLDVLIH 231 (322)
Q Consensus 217 -----~~~fD~V~~~~~l~~ 231 (322)
-+..|+++.+....+
T Consensus 80 ~~~~~~g~iDilvnnag~~~ 99 (251)
T d2c07a1 80 KILTEHKNVDILVNNAGITR 99 (251)
T ss_dssp HHHHHCSCCCEEEECCCCCC
T ss_pred HHHHhcCCceeeeecccccc
Confidence 479999998765544
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=93.70 E-value=0.19 Score=40.97 Aligned_cols=76 Identities=21% Similarity=0.200 Sum_probs=57.6
Q ss_pred CCCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-------
Q 020710 147 LKGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL------- 216 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~------- 216 (322)
.+++++|=-|++.|. .+..|++.|++|+.+|.+++.++.+.+.+...+... .++.+|+.+.
T Consensus 6 L~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g~~~---------~~~~~Dv~~~~~v~~~~ 76 (259)
T d2ae2a_ 6 LEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKGFKV---------EASVCDLSSRSERQELM 76 (259)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEE---------EEEECCTTCHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCc---------eEEEeeCCCHHHHHHHH
Confidence 357889988988775 456677779999999999999988887777655433 6788888663
Q ss_pred -------CCCccEEEEcccccc
Q 020710 217 -------DGKYDTVVCLDVLIH 231 (322)
Q Consensus 217 -------~~~fD~V~~~~~l~~ 231 (322)
.++.|+++.+..+.+
T Consensus 77 ~~~~~~~~~~idilvnnAG~~~ 98 (259)
T d2ae2a_ 77 NTVANHFHGKLNILVNNAGIVI 98 (259)
T ss_dssp HHHHHHTTTCCCEEEECCCCCC
T ss_pred HHHHHHhCCCceEEEECCceec
Confidence 247999998765543
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=93.67 E-value=0.19 Score=38.27 Aligned_cols=44 Identities=27% Similarity=0.246 Sum_probs=32.7
Q ss_pred CCCCCeEEEECCCcc-cchHHHHhc-CC-EEEEEeCCHHHHHHHHHH
Q 020710 146 SLKGIAVCDAGCGTG-SLAIPLAKQ-GA-IVSASDISAAMVAEARKK 189 (322)
Q Consensus 146 ~~~~~~VLDvGcG~G-~~~~~la~~-~~-~v~gvD~s~~~l~~a~~~ 189 (322)
..++.+||=+|||.- ..+..+++. |+ .|+.+|.++.-++.+++.
T Consensus 26 ~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~ 72 (174)
T d1f8fa2 26 VTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQL 72 (174)
T ss_dssp CCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHc
Confidence 457889999999843 345556555 66 577889999888888764
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=93.45 E-value=0.14 Score=41.84 Aligned_cols=76 Identities=21% Similarity=0.139 Sum_probs=57.1
Q ss_pred CCCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-------
Q 020710 147 LKGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL------- 216 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~------- 216 (322)
.+++++|=-|++.|. .+..|++.|++|+.+|.+++-++...+.+...+... .++..|+.+.
T Consensus 6 LkgK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~~~~~---------~~~~~Dv~~~~~v~~~~ 76 (259)
T d1xq1a_ 6 LKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKGFQV---------TGSVCDASLRPEREKLM 76 (259)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCE---------EEEECCTTSHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCce---------EEEeccCCCHHHHHHHH
Confidence 357889999988776 566677789999999999998888877776554322 7788888653
Q ss_pred -------CCCccEEEEcccccc
Q 020710 217 -------DGKYDTVVCLDVLIH 231 (322)
Q Consensus 217 -------~~~fD~V~~~~~l~~ 231 (322)
.+..|+++.+....+
T Consensus 77 ~~~~~~~~g~idilvnnAG~~~ 98 (259)
T d1xq1a_ 77 QTVSSMFGGKLDILINNLGAIR 98 (259)
T ss_dssp HHHHHHHTTCCSEEEEECCC--
T ss_pred HHHHHHhCCCcccccccccccC
Confidence 368999998766544
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=93.37 E-value=0.27 Score=39.96 Aligned_cols=69 Identities=20% Similarity=0.215 Sum_probs=51.1
Q ss_pred EEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC------------
Q 020710 152 VCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL------------ 216 (322)
Q Consensus 152 VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~------------ 216 (322)
+|=-|++.|. .+..|++.|++|+.+|.+++.++...+.+.+.+... .++.+|+.+.
T Consensus 4 alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~g~~~---------~~~~~Dv~~~~~v~~~~~~~~~ 74 (255)
T d1gega_ 4 ALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAGGHA---------VAVKVDVSDRDQVFAAVEQARK 74 (255)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCE---------EEEECCTTSHHHHHHHHHHHHH
T ss_pred EEEcCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcE---------EEEEeeCCCHHHHHHHHHHHHH
Confidence 4666776655 345566779999999999999888877776655332 7788898774
Q ss_pred -CCCccEEEEcccc
Q 020710 217 -DGKYDTVVCLDVL 229 (322)
Q Consensus 217 -~~~fD~V~~~~~l 229 (322)
-++.|+++.+-.+
T Consensus 75 ~~g~iDilVnnAG~ 88 (255)
T d1gega_ 75 TLGGFDVIVNNAGV 88 (255)
T ss_dssp HTTCCCEEEECCCC
T ss_pred HhCCccEEEecccc
Confidence 4789999976544
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=93.34 E-value=0.19 Score=38.46 Aligned_cols=45 Identities=29% Similarity=0.245 Sum_probs=36.8
Q ss_pred CCCCCCeEEEECCCc-ccchHHHHhc-CC-EEEEEeCCHHHHHHHHHH
Q 020710 145 GSLKGIAVCDAGCGT-GSLAIPLAKQ-GA-IVSASDISAAMVAEARKK 189 (322)
Q Consensus 145 ~~~~~~~VLDvGcG~-G~~~~~la~~-~~-~v~gvD~s~~~l~~a~~~ 189 (322)
+..++.+||=+|||. |.++..+++. |+ .|+.+|.+++-++.+++.
T Consensus 25 ~v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~ 72 (174)
T d1e3ia2 25 KVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKAL 72 (174)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT
T ss_pred CCCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHh
Confidence 346789999999997 7788888877 76 699999999988777664
|
| >d1rjda_ c.66.1.37 (A:) Leucine carboxy methyltransferase Ppm1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Leucine carboxy methyltransferase Ppm1 domain: Leucine carboxy methyltransferase Ppm1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.28 E-value=0.36 Score=40.85 Aligned_cols=110 Identities=17% Similarity=0.163 Sum_probs=65.8
Q ss_pred CCCeEEEECCCcccchHHHHhcCCEEEEEeCC-HHHHHHHHHHhHHhhh-------c---cC---CCCCCCCCceEEccc
Q 020710 148 KGIAVCDAGCGTGSLAIPLAKQGAIVSASDIS-AAMVAEARKKAEEELL-------A---DN---GGEAPVMPKFEVKDL 213 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~~~~la~~~~~v~gvD~s-~~~l~~a~~~~~~~~~-------~---~~---~~~~~~~~~~~~~d~ 213 (322)
+...|+-+|||.-.....+.+....+..+|++ |++++.=++.+.+... . .. ...+..+-..+..|+
T Consensus 96 ~~~QVV~LGaG~DTr~~Rl~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~l~~~~~~~~~~~~~~~s~~y~lv~~DL 175 (328)
T d1rjda_ 96 EKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACDL 175 (328)
T ss_dssp SSEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECCT
T ss_pred CCcEEEEeCCccchHHHHhhccCCCcEEEECCcHHHHHHHHHHHHhchhhhhhccccccccccccccCCCCCeEEEecCC
Confidence 45689999999998888886653344444444 4455433333322110 0 00 000011125566676
Q ss_pred ccC-----------C-CCccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEEC
Q 020710 214 ESL-----------D-GKYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFA 257 (322)
Q Consensus 214 ~~~-----------~-~~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~ 257 (322)
.+. + ...=++++-.++++++.+...++++.+.+..+.+.++++.
T Consensus 176 ~d~~~~~~l~~~~~d~~~PTl~iaE~vl~Yl~~~~~~~li~~~~~~f~~~~~i~YE 231 (328)
T d1rjda_ 176 NDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKFSHGLWISYD 231 (328)
T ss_dssp TCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHCSSEEEEEEE
T ss_pred CCcHhhHHHHHccCCCCCCeEEEEeeehhcCCHHHHHHHHHHHHHhCCCceEEEec
Confidence 653 1 2233577777999999888899999999877777777663
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=93.24 E-value=0.18 Score=41.16 Aligned_cols=75 Identities=23% Similarity=0.204 Sum_probs=56.8
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
+++++|=-|++.|. .+..|++.|++|..+|.+++.++...+...+.....++ .++.+|+.+.
T Consensus 3 ~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~~~~~~~-------~~~~~Dvt~~~~v~~~~~ 75 (258)
T d1iy8a_ 3 TDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEV-------LTTVADVSDEAQVEAYVT 75 (258)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCTTCCE-------EEEECCTTSHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhCCCCeE-------EEEeccCCCHHHHHHHHH
Confidence 47788888988776 46777788999999999999988887776654433222 6788898764
Q ss_pred -----CCCccEEEEcccc
Q 020710 217 -----DGKYDTVVCLDVL 229 (322)
Q Consensus 217 -----~~~fD~V~~~~~l 229 (322)
-+..|+++.+..+
T Consensus 76 ~~~~~~G~iDiLVnnAG~ 93 (258)
T d1iy8a_ 76 ATTERFGRIDGFFNNAGI 93 (258)
T ss_dssp HHHHHHSCCSEEEECCCC
T ss_pred HHHHHhCCCCEEEECCcc
Confidence 3789999987554
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=93.21 E-value=0.16 Score=38.93 Aligned_cols=47 Identities=17% Similarity=0.110 Sum_probs=36.2
Q ss_pred CCCCCeEEEECCCccc-chHHHHhc-C-CEEEEEeCCHHHHHHHHHHhHH
Q 020710 146 SLKGIAVCDAGCGTGS-LAIPLAKQ-G-AIVSASDISAAMVAEARKKAEE 192 (322)
Q Consensus 146 ~~~~~~VLDvGcG~G~-~~~~la~~-~-~~v~gvD~s~~~l~~a~~~~~~ 192 (322)
..++.+||=+|||... ++..+++. | .+|+++|.+++-++.|++.-..
T Consensus 27 ~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA~ 76 (176)
T d1d1ta2 27 VKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGAT 76 (176)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTCS
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCCc
Confidence 4578899999998544 45555555 6 5799999999999999877554
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=93.06 E-value=0.32 Score=37.50 Aligned_cols=74 Identities=15% Similarity=0.033 Sum_probs=54.4
Q ss_pred CCCCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC------
Q 020710 146 SLKGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL------ 216 (322)
Q Consensus 146 ~~~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~------ 216 (322)
+.++++||=.|++.|. .+..|++.|++|+.++.+++.++...+.+...... .+...|..+.
T Consensus 20 ~l~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~----------~~~~~d~~~~~~~~~~ 89 (191)
T d1luaa1 20 SVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRFKV----------NVTAAETADDASRAEA 89 (191)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHTC----------CCEEEECCSHHHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhhccchhhcccchHHHHHHHHHHHhccch----------hhhhhhcccHHHHHHH
Confidence 4678999999987665 35566777999999999999888887776654321 5566666543
Q ss_pred CCCccEEEEcccc
Q 020710 217 DGKYDTVVCLDVL 229 (322)
Q Consensus 217 ~~~fD~V~~~~~l 229 (322)
-+..|+|+++...
T Consensus 90 ~~~iDilin~Ag~ 102 (191)
T d1luaa1 90 VKGAHFVFTAGAI 102 (191)
T ss_dssp TTTCSEEEECCCT
T ss_pred hcCcCeeeecCcc
Confidence 5778999987653
|
| >d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Thermotoga maritima [TaxId: 2336]
Probab=92.91 E-value=0.081 Score=35.84 Aligned_cols=55 Identities=15% Similarity=0.059 Sum_probs=35.2
Q ss_pred ccchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEc-ccccCCCCccEEEEcccc
Q 020710 160 GSLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVK-DLESLDGKYDTVVCLDVL 229 (322)
Q Consensus 160 G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~-d~~~~~~~fD~V~~~~~l 229 (322)
..++..|.++|++|+|.|..+.. ..+++.+.+. .+..+ |...+ ...|+|+.+..+
T Consensus 15 s~LA~~L~~~G~~VsGSD~~~~~---~t~~L~~~Gi-----------~i~~gh~~~~i-~~~d~vV~SsAI 70 (89)
T d1j6ua1 15 SAVALHEFSNGNDVYGSNIEETE---RTAYLRKLGI-----------PIFVPHSADNW-YDPDLVIKTPAV 70 (89)
T ss_dssp HHHHHHHHHTTCEEEEECSSCCH---HHHHHHHTTC-----------CEESSCCTTSC-CCCSEEEECTTC
T ss_pred HHHHHHHHhCCCeEEEEeCCCCh---hHHHHHHCCC-----------eEEeeeccccc-CCCCEEEEecCc
Confidence 34566777789999999988632 2234566654 33333 33333 357999998876
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=92.85 E-value=0.12 Score=35.37 Aligned_cols=68 Identities=22% Similarity=0.239 Sum_probs=41.7
Q ss_pred CCCeEEEECCC-cc--cchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccCCCCccEEE
Q 020710 148 KGIAVCDAGCG-TG--SLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESLDGKYDTVV 224 (322)
Q Consensus 148 ~~~~VLDvGcG-~G--~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~fD~V~ 224 (322)
...+|.=||.| +| .++..|.++|++|+|.|...... .+++.+.+. .+..+...+.-...|+|+
T Consensus 7 ~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~~~~---~~~L~~~Gi-----------~v~~g~~~~~i~~~d~vV 72 (96)
T d1p3da1 7 RVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADGVV---TQRLAQAGA-----------KIYIGHAEEHIEGASVVV 72 (96)
T ss_dssp TCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCSHH---HHHHHHTTC-----------EEEESCCGGGGTTCSEEE
T ss_pred hCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCCChh---hhHHHHCCC-----------eEEECCccccCCCCCEEE
Confidence 45678888644 44 44566777799999999863211 123334443 444444443335689999
Q ss_pred Ecccc
Q 020710 225 CLDVL 229 (322)
Q Consensus 225 ~~~~l 229 (322)
.+..+
T Consensus 73 ~S~AI 77 (96)
T d1p3da1 73 VSSAI 77 (96)
T ss_dssp ECTTS
T ss_pred ECCCc
Confidence 88765
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=92.81 E-value=0.28 Score=37.34 Aligned_cols=45 Identities=20% Similarity=0.086 Sum_probs=34.4
Q ss_pred CCCCCCeEEEECCCccc-chHHHHhc-CC-EEEEEeCCHHHHHHHHHH
Q 020710 145 GSLKGIAVCDAGCGTGS-LAIPLAKQ-GA-IVSASDISAAMVAEARKK 189 (322)
Q Consensus 145 ~~~~~~~VLDvGcG~G~-~~~~la~~-~~-~v~gvD~s~~~l~~a~~~ 189 (322)
...++.+||=+|||... ++..+++. |+ +|+++|.+++-++.+++.
T Consensus 24 ~~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~l 71 (174)
T d1p0fa2 24 KVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIEL 71 (174)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHT
T ss_pred CCCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHc
Confidence 35678999999998544 44555555 65 799999999999888764
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=92.79 E-value=0.16 Score=41.71 Aligned_cols=74 Identities=18% Similarity=0.111 Sum_probs=54.2
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
+++.+|=-|++.|. .+..|++.|++|+.+|.+++.++.+.+.+...+. +.++.+|+.+.
T Consensus 5 ~gKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~~----------~~~~~~Dv~~~~~v~~~~~ 74 (268)
T d2bgka1 5 QDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGSPDV----------ISFVHCDVTKDEDVRNLVD 74 (268)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCTTT----------EEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcCCCc----------eEEEEccCCCHHHHHHHHH
Confidence 57889999988776 3455667799999999999888776665543221 26788898764
Q ss_pred -----CCCccEEEEcccccc
Q 020710 217 -----DGKYDTVVCLDVLIH 231 (322)
Q Consensus 217 -----~~~fD~V~~~~~l~~ 231 (322)
-+..|+++.+....+
T Consensus 75 ~~~~~~g~iD~lVnnAG~~~ 94 (268)
T d2bgka1 75 TTIAKHGKLDIMFGNVGVLS 94 (268)
T ss_dssp HHHHHHSCCCEEEECCCCCC
T ss_pred HHHHHcCCcceecccccccc
Confidence 378999998765533
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=92.53 E-value=0.22 Score=40.66 Aligned_cols=73 Identities=22% Similarity=0.236 Sum_probs=56.2
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
+++.+|=-|.+.|. .+..|++.|++|+.+|.+++.++.+.+.+...+... .++.+|+.+.
T Consensus 4 ~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g~~~---------~~~~~Dv~~~~~v~~~~~ 74 (260)
T d1zema1 4 NGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKGVEA---------RSYVCDVTSEEAVIGTVD 74 (260)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTSCE---------EEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcE---------EEEEccCCCHHHHHHHHH
Confidence 57888988887765 456677789999999999999988888776654332 7788898764
Q ss_pred -----CCCccEEEEcccc
Q 020710 217 -----DGKYDTVVCLDVL 229 (322)
Q Consensus 217 -----~~~fD~V~~~~~l 229 (322)
-+..|+++.+...
T Consensus 75 ~~~~~~g~iDilVnnaG~ 92 (260)
T d1zema1 75 SVVRDFGKIDFLFNNAGY 92 (260)
T ss_dssp HHHHHHSCCCEEEECCCC
T ss_pred HHHHHhCCCCeehhhhcc
Confidence 3789999976543
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=92.50 E-value=0.42 Score=36.02 Aligned_cols=44 Identities=25% Similarity=0.219 Sum_probs=32.5
Q ss_pred CCCCeEEEECCCcccc-hHHHHhc-CC-EEEEEeCCHHHHHHHHHHh
Q 020710 147 LKGIAVCDAGCGTGSL-AIPLAKQ-GA-IVSASDISAAMVAEARKKA 190 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~-~~~la~~-~~-~v~gvD~s~~~l~~a~~~~ 190 (322)
.++.+||-+|||.... +..+++. |+ .|+++|.+++-++.+++..
T Consensus 31 ~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~g 77 (172)
T d1h2ba2 31 YPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLG 77 (172)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTT
T ss_pred CCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhcc
Confidence 4678999999985544 4556654 54 7899999998888777543
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=92.24 E-value=0.21 Score=40.72 Aligned_cols=75 Identities=27% Similarity=0.163 Sum_probs=55.9
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
+++++|=-|++.|. .+..|++.|++|+.+|.+++.++...+.+.+.+... .++.+|+.+.
T Consensus 10 ~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l~~~g~~~---------~~~~~Dvs~~~~~~~~~~ 80 (255)
T d1fmca_ 10 DGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQA---------FACRCDITSEQELSALAD 80 (255)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTTCCE---------EEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCcE---------EEEEccCCCHHHHHHHHH
Confidence 57788877776665 345566679999999999999888887777654332 7788898764
Q ss_pred -----CCCccEEEEcccccc
Q 020710 217 -----DGKYDTVVCLDVLIH 231 (322)
Q Consensus 217 -----~~~fD~V~~~~~l~~ 231 (322)
-+..|+++.+....+
T Consensus 81 ~~~~~~g~iDilvnnAG~~~ 100 (255)
T d1fmca_ 81 FAISKLGKVDILVNNAGGGG 100 (255)
T ss_dssp HHHHHHSSCCEEEECCCCCC
T ss_pred HHHHHcCCCCEeeeCCcCCC
Confidence 378999998765543
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.16 E-value=0.29 Score=39.46 Aligned_cols=72 Identities=24% Similarity=0.186 Sum_probs=53.3
Q ss_pred CCCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-------
Q 020710 147 LKGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL------- 216 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~------- 216 (322)
.+++++|=-|++.|. .+..|++.|++|+.+|.+++-++...+.... +.+++.|+.+.
T Consensus 5 L~GK~~lITGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~~~~-------------~~~~~~Dv~d~~~v~~~~ 71 (244)
T d1pr9a_ 5 LAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVRECPG-------------IEPVCVDLGDWEATERAL 71 (244)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHSTT-------------CEEEECCTTCHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHhcCC-------------CeEEEEeCCCHHHHHHHH
Confidence 368899999998874 4567777899999999998877765544321 26778888664
Q ss_pred --CCCccEEEEcccccc
Q 020710 217 --DGKYDTVVCLDVLIH 231 (322)
Q Consensus 217 --~~~fD~V~~~~~l~~ 231 (322)
-++.|+++.+..+.+
T Consensus 72 ~~~g~iDilVnnAg~~~ 88 (244)
T d1pr9a_ 72 GSVGPVDLLVNNAAVAL 88 (244)
T ss_dssp TTCCCCCEEEECCCCCC
T ss_pred HHhCCceEEEecccccc
Confidence 378999998765543
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=91.97 E-value=0.28 Score=37.21 Aligned_cols=103 Identities=20% Similarity=0.229 Sum_probs=60.4
Q ss_pred CeEEEECCCcccc--hHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccCCCCccEEEEcc
Q 020710 150 IAVCDAGCGTGSL--AIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESLDGKYDTVVCLD 227 (322)
Q Consensus 150 ~~VLDvGcG~G~~--~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~fD~V~~~~ 227 (322)
++|.=||+|.-.. +..|++.|.+|+.+|.+++-++..++.-......... ...........|..+.-...|+|++.
T Consensus 2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~e~~~~aD~iii~- 79 (184)
T d1bg6a2 2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGL-AGTAHPDLLTSDIGLAVKDADVILIV- 79 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSC-CEEECCSEEESCHHHHHTTCSEEEEC-
T ss_pred CEEEEECccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCCchhhhhh-hhhhhhhhhhhhhHhHhcCCCEEEEE-
Confidence 5788899986553 4556677999999999998877765442110000000 00000122223333323568999964
Q ss_pred cccccCcchHHHHHHHHHhccCCeEEEEECC
Q 020710 228 VLIHYPQSKADGMIAHLASLAEKRLILSFAP 258 (322)
Q Consensus 228 ~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~ 258 (322)
.+......++++++..+.++.++.+.+
T Consensus 80 ----v~~~~~~~~~~~i~~~l~~~~~iv~~~ 106 (184)
T d1bg6a2 80 ----VPAIHHASIAANIASYISEGQLIILNP 106 (184)
T ss_dssp ----SCGGGHHHHHHHHGGGCCTTCEEEESS
T ss_pred ----EchhHHHHHHHHhhhccCCCCEEEEeC
Confidence 344457789999988776655555544
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=91.92 E-value=0.46 Score=38.48 Aligned_cols=73 Identities=19% Similarity=0.103 Sum_probs=53.8
Q ss_pred CCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC---------
Q 020710 149 GIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL--------- 216 (322)
Q Consensus 149 ~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--------- 216 (322)
++.+|=-|++.|. .+..|++.|++|+.+|.+++.++...+.+.+.+... .++.+|+.+.
T Consensus 2 gKValITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~g~~~---------~~~~~Dvs~~~~v~~~~~~ 72 (257)
T d2rhca1 2 SEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAGVEA---------DGRTCDVRSVPEIEALVAA 72 (257)
T ss_dssp CCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCE---------EEEECCTTCHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcE---------EEEEeecCCHHHHHHHHHH
Confidence 4455777776665 345566779999999999999988887776654332 7888998775
Q ss_pred ----CCCccEEEEccccc
Q 020710 217 ----DGKYDTVVCLDVLI 230 (322)
Q Consensus 217 ----~~~fD~V~~~~~l~ 230 (322)
-++.|+++.+..+.
T Consensus 73 ~~~~~g~iDilVnnAG~~ 90 (257)
T d2rhca1 73 VVERYGPVDVLVNNAGRP 90 (257)
T ss_dssp HHHHTCSCSEEEECCCCC
T ss_pred HHHHhCCCCEEEeccccc
Confidence 47899999875543
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=91.89 E-value=0.41 Score=39.48 Aligned_cols=77 Identities=14% Similarity=0.115 Sum_probs=55.3
Q ss_pred CCCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-------
Q 020710 147 LKGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL------- 216 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~------- 216 (322)
.+++++|=-|++.|. .+..|++.|++|+.+|.+...++...+.+...... + +.++..|+.+.
T Consensus 23 l~gK~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~~~l~~~~~~l~~~~g~-~-------~~~~~~D~~~~~~v~~~~ 94 (294)
T d1w6ua_ 23 FQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTGN-K-------VHAIQCDVRDPDMVQNTV 94 (294)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSS-C-------EEEEECCTTCHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhcCC-c-------eEEEEecccChHHHHHHh
Confidence 357889999988773 45666777999999999998887776655433211 1 16778888664
Q ss_pred ------CCCccEEEEcccccc
Q 020710 217 ------DGKYDTVVCLDVLIH 231 (322)
Q Consensus 217 ------~~~fD~V~~~~~l~~ 231 (322)
.+..|+++.+....+
T Consensus 95 ~~~~~~~g~iDilvnnAg~~~ 115 (294)
T d1w6ua_ 95 SELIKVAGHPNIVINNAAGNF 115 (294)
T ss_dssp HHHHHHTCSCSEEEECCCCCC
T ss_pred hhhhhhccccchhhhhhhhcc
Confidence 588999998765543
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=91.56 E-value=1.3 Score=33.86 Aligned_cols=110 Identities=18% Similarity=0.165 Sum_probs=62.4
Q ss_pred CCeEEEECCCcccc--hHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhcc--CCCCCCCC-----CceE-EcccccCCC
Q 020710 149 GIAVCDAGCGTGSL--AIPLAKQGAIVSASDISAAMVAEARKKAEEELLAD--NGGEAPVM-----PKFE-VKDLESLDG 218 (322)
Q Consensus 149 ~~~VLDvGcG~G~~--~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~--~~~~~~~~-----~~~~-~~d~~~~~~ 218 (322)
-.+|-=||+|+=.. +..++..|.+|+..|++++.++.+.++....-... +....... -.+. ..+... -.
T Consensus 4 I~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~ 82 (186)
T d1wdka3 4 VKQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSYGD-FG 82 (186)
T ss_dssp CSSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSSTT-GG
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeeccccccc-cc
Confidence 35688899975333 33556679999999999999988877654321100 00000000 0011 112221 24
Q ss_pred CccEEEEcccccccCcchHHHHHHHHHhccCCeEEEEECCChhh
Q 020710 219 KYDTVVCLDVLIHYPQSKADGMIAHLASLAEKRLILSFAPKTFY 262 (322)
Q Consensus 219 ~fD~V~~~~~l~~~~~~~~~~~l~~l~~~~~~~~il~~~~~~~~ 262 (322)
..|+|+- .+.+.+.- ..++++++.+..++..|+..+..++.
T Consensus 83 ~adlViE-av~E~l~~--K~~lf~~l~~~~~~~~IiaSnTS~l~ 123 (186)
T d1wdka3 83 NVDLVVE-AVVENPKV--KQAVLAEVENHVREDAILASNTSTIS 123 (186)
T ss_dssp GCSEEEE-CCCSCHHH--HHHHHHHHHTTSCTTCEEEECCSSSC
T ss_pred ccceeee-eecchHHH--HHHHHHHHHhhcCCCeeEEecccccc
Confidence 4687873 22222222 35799999998888888876655443
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=91.54 E-value=0.41 Score=38.47 Aligned_cols=72 Identities=19% Similarity=0.143 Sum_probs=52.3
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
+++++|=-|++.|. .+..|++.|++|+.+|.+++.++...+.+... . .++..|+.+.
T Consensus 3 ~gK~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~~~l~~~~~~~~~~---~---------~~~~~Dv~~~~~v~~~~~ 70 (243)
T d1q7ba_ 3 EGKIALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQAISDYLGAN---G---------KGLMLNVTDPASIESVLE 70 (243)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGGG---E---------EEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhCCC---C---------cEEEEEecCHHHhhhhhh
Confidence 57788888887764 45566777999999999998887766555322 1 6778888664
Q ss_pred -----CCCccEEEEcccccc
Q 020710 217 -----DGKYDTVVCLDVLIH 231 (322)
Q Consensus 217 -----~~~fD~V~~~~~l~~ 231 (322)
-+..|+++.+....+
T Consensus 71 ~~~~~~g~iDilVnnAg~~~ 90 (243)
T d1q7ba_ 71 KIRAEFGEVDILVNNAGITR 90 (243)
T ss_dssp HHHHHTCSCSEEEECCCCCC
T ss_pred hhhcccCCcceehhhhhhcc
Confidence 478999998765544
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=91.50 E-value=0.35 Score=38.99 Aligned_cols=73 Identities=16% Similarity=0.168 Sum_probs=54.0
Q ss_pred CCCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-------
Q 020710 147 LKGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL------- 216 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~------- 216 (322)
.+++++|=-|++.|. .+..|++.|++|+.+|.+++.++...+.+... +.++.+|+.+.
T Consensus 4 L~gK~alITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~------------~~~~~~Dv~~~~~v~~~~ 71 (244)
T d1nffa_ 4 LTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAELADA------------ARYVHLDVTQPAQWKAAV 71 (244)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTGGG------------EEEEECCTTCHHHHHHHH
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhCc------------ceEEEeecCCHHHHHHHH
Confidence 357889988988774 45667778999999999998877666554322 16788888664
Q ss_pred ------CCCccEEEEcccccc
Q 020710 217 ------DGKYDTVVCLDVLIH 231 (322)
Q Consensus 217 ------~~~fD~V~~~~~l~~ 231 (322)
-+..|+++.+....+
T Consensus 72 ~~~~~~~g~idilinnAG~~~ 92 (244)
T d1nffa_ 72 DTAVTAFGGLHVLVNNAGILN 92 (244)
T ss_dssp HHHHHHHSCCCEEEECCCCCC
T ss_pred HHHHHHhCCCeEEEECCcccC
Confidence 378999998765543
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=91.27 E-value=0.31 Score=40.02 Aligned_cols=76 Identities=22% Similarity=0.211 Sum_probs=56.7
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
+++++|=-|++.|. .+..|++.|++|+.+|.+++-++.+.+.+.+.+... .++.++.+|+.+.
T Consensus 3 ~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~~~~~------~~~~~~~~Dv~~~~~v~~~~~ 76 (274)
T d1xhla_ 3 SGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPA------EKINAVVADVTEASGQDDIIN 76 (274)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCG------GGEEEEECCTTSHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCCC------cceEEEEeeCCCHHHHHHHHH
Confidence 47888888888775 456677779999999999998888887776654321 1126788998764
Q ss_pred -----CCCccEEEEcccc
Q 020710 217 -----DGKYDTVVCLDVL 229 (322)
Q Consensus 217 -----~~~fD~V~~~~~l 229 (322)
-+..|+++.+...
T Consensus 77 ~~~~~~G~iDilVnnAG~ 94 (274)
T d1xhla_ 77 TTLAKFGKIDILVNNAGA 94 (274)
T ss_dssp HHHHHHSCCCEEEECCCC
T ss_pred HHHHHcCCceEEEeeccc
Confidence 3789999987553
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=91.23 E-value=0.44 Score=38.52 Aligned_cols=75 Identities=27% Similarity=0.209 Sum_probs=54.9
Q ss_pred CCCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHH-hhhccCCCCCCCCCceEEcccccC------
Q 020710 147 LKGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEE-ELLADNGGEAPVMPKFEVKDLESL------ 216 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~-~~~~~~~~~~~~~~~~~~~d~~~~------ 216 (322)
.+++++|=-|++.|. .+..|++.|++|+.+|.+++.++...+.+.+ .+.. +.++.+|+.+.
T Consensus 3 l~gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~g~~---------~~~~~~Dv~~~~~v~~~ 73 (251)
T d1vl8a_ 3 LRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYGVE---------TMAFRCDVSNYEEVKKL 73 (251)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCC---------EEEEECCTTCHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhCCc---------EEEEEccCCCHHHHHHH
Confidence 357889999988775 4566777899999999999888776655543 2322 26788898764
Q ss_pred -------CCCccEEEEccccc
Q 020710 217 -------DGKYDTVVCLDVLI 230 (322)
Q Consensus 217 -------~~~fD~V~~~~~l~ 230 (322)
-++.|+++.+..+.
T Consensus 74 ~~~~~~~~g~iDiLVnnAG~~ 94 (251)
T d1vl8a_ 74 LEAVKEKFGKLDTVVNAAGIN 94 (251)
T ss_dssp HHHHHHHHSCCCEEEECCCCC
T ss_pred HHHHHHHcCCCCEEEECCCCC
Confidence 37899999876553
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=90.88 E-value=0.7 Score=33.95 Aligned_cols=65 Identities=12% Similarity=0.021 Sum_probs=42.6
Q ss_pred CCeEEEECCCcccchHHHH----hcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-------C
Q 020710 149 GIAVCDAGCGTGSLAIPLA----KQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------D 217 (322)
Q Consensus 149 ~~~VLDvGcG~G~~~~~la----~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------~ 217 (322)
..+|+=+|+| ..+..++ +.|.+++.+|.+++......+.....+ +.++.+|..+. -
T Consensus 3 knHiII~G~g--~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~~~~-----------~~vi~Gd~~d~~~L~~a~i 69 (153)
T d1id1a_ 3 KDHFIVCGHS--ILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDN-----------ADVIPGDSNDSSVLKKAGI 69 (153)
T ss_dssp CSCEEEECCS--HHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTT-----------CEEEESCTTSHHHHHHHTT
T ss_pred CCEEEEECCC--HHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhhcCC-----------cEEEEccCcchHHHHHhcc
Confidence 4467777775 4444444 448899999999876544433333222 27889998775 3
Q ss_pred CCccEEEEc
Q 020710 218 GKYDTVVCL 226 (322)
Q Consensus 218 ~~fD~V~~~ 226 (322)
...|.|++.
T Consensus 70 ~~a~~vi~~ 78 (153)
T d1id1a_ 70 DRCRAILAL 78 (153)
T ss_dssp TTCSEEEEC
T ss_pred ccCCEEEEc
Confidence 678888865
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=90.84 E-value=0.32 Score=39.82 Aligned_cols=76 Identities=24% Similarity=0.202 Sum_probs=56.8
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
+++++|=-|++.|. .+..|++.|++|+.+|.+++.++.+.+.+.+.+... ..+.++.+|+.+.
T Consensus 4 ~gK~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~~~l~~~~~~l~~~~~~~------~~~~~~~~Dvs~~~~v~~~~~ 77 (272)
T d1xkqa_ 4 SNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSE------KQVNSVVADVTTEDGQDQIIN 77 (272)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCG------GGEEEEECCTTSHHHHHHHHH
T ss_pred CCCEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCC------CceEEEEccCCCHHHHHHHHH
Confidence 57888888888774 456677779999999999999988888876654321 1126788898764
Q ss_pred -----CCCccEEEEcccc
Q 020710 217 -----DGKYDTVVCLDVL 229 (322)
Q Consensus 217 -----~~~fD~V~~~~~l 229 (322)
-+..|+++.+...
T Consensus 78 ~~~~~~g~iDilvnnAG~ 95 (272)
T d1xkqa_ 78 STLKQFGKIDVLVNNAGA 95 (272)
T ss_dssp HHHHHHSCCCEEEECCCC
T ss_pred HHHHHhCCceEEEeCCcc
Confidence 3789999987544
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=90.78 E-value=0.42 Score=36.40 Aligned_cols=44 Identities=23% Similarity=0.177 Sum_probs=34.0
Q ss_pred CCCCCeEEEECCC--cccchHHHHhc-CCEEEEEeCCHHHHHHHHHH
Q 020710 146 SLKGIAVCDAGCG--TGSLAIPLAKQ-GAIVSASDISAAMVAEARKK 189 (322)
Q Consensus 146 ~~~~~~VLDvGcG--~G~~~~~la~~-~~~v~gvD~s~~~l~~a~~~ 189 (322)
..++.+||=.|++ .|..+..+++. |++|++++-+++.++.+++.
T Consensus 27 v~~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~ 73 (182)
T d1v3va2 27 VKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQI 73 (182)
T ss_dssp CCSSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT
T ss_pred CCCCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHhh
Confidence 3578899988875 45667777776 99999999998877766654
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.63 E-value=0.37 Score=39.00 Aligned_cols=70 Identities=21% Similarity=0.185 Sum_probs=52.1
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
+++++|=-|++.|. .+..|++.|++|+.+|.+++.++...+.... +.++.+|+.+.
T Consensus 5 ~GK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~-------------~~~~~~Dvs~~~~v~~~~~ 71 (250)
T d1ydea1 5 AGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQELPG-------------AVFILCDVTQEDDVKTLVS 71 (250)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCTT-------------EEEEECCTTSHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhcCC-------------CeEEEccCCCHHHHHHHHH
Confidence 57889999988774 3566677799999999999887766554322 16788898764
Q ss_pred -----CCCccEEEEccccc
Q 020710 217 -----DGKYDTVVCLDVLI 230 (322)
Q Consensus 217 -----~~~fD~V~~~~~l~ 230 (322)
-++.|+++.+....
T Consensus 72 ~~~~~~g~iDilVnnAG~~ 90 (250)
T d1ydea1 72 ETIRRFGRLDCVVNNAGHH 90 (250)
T ss_dssp HHHHHHSCCCEEEECCCCC
T ss_pred HHHHhcCCCCEEEeccccc
Confidence 37899999876543
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=90.52 E-value=0.44 Score=36.02 Aligned_cols=45 Identities=27% Similarity=0.269 Sum_probs=33.2
Q ss_pred CCCCCeEEEECCCcccc-hHHHHhc-C-CEEEEEeCCHHHHHHHHHHh
Q 020710 146 SLKGIAVCDAGCGTGSL-AIPLAKQ-G-AIVSASDISAAMVAEARKKA 190 (322)
Q Consensus 146 ~~~~~~VLDvGcG~G~~-~~~la~~-~-~~v~gvD~s~~~l~~a~~~~ 190 (322)
..++.+||=+|||.+.. ...+++. + .+|+++|.+++-.+.+++.-
T Consensus 26 vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~G 73 (176)
T d2jhfa2 26 VTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVG 73 (176)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTT
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhC
Confidence 46789999999975443 3334443 5 58999999999888887654
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=90.08 E-value=0.53 Score=38.38 Aligned_cols=76 Identities=18% Similarity=0.227 Sum_probs=56.0
Q ss_pred CCCCeEEEECCCccc---chHHHHhcCCEEEEEeCC-HHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC------
Q 020710 147 LKGIAVCDAGCGTGS---LAIPLAKQGAIVSASDIS-AAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL------ 216 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~------ 216 (322)
.+++++|=-|++.|. .+..|+++|++|+.+|.+ ++.++...+.+.+.+... .+.+.|+.+.
T Consensus 16 L~gK~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~g~~~---------~~~~~D~~~~~~v~~~ 86 (272)
T d1g0oa_ 16 LEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNGSDA---------ACVKANVGVVEDIVRM 86 (272)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCE---------EEEECCTTCHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHHhhCCce---------eeEeCCCCCHHHHHHH
Confidence 467889999988875 566777789999999987 566666666666655433 7788888764
Q ss_pred -------CCCccEEEEcccccc
Q 020710 217 -------DGKYDTVVCLDVLIH 231 (322)
Q Consensus 217 -------~~~fD~V~~~~~l~~ 231 (322)
.+..|+++.+.....
T Consensus 87 ~~~~~~~~g~idilV~nag~~~ 108 (272)
T d1g0oa_ 87 FEEAVKIFGKLDIVCSNSGVVS 108 (272)
T ss_dssp HHHHHHHHSCCCEEEECCCCCC
T ss_pred HHHHHHHhCCCCccccccccch
Confidence 378999998765543
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=89.90 E-value=0.44 Score=38.67 Aligned_cols=74 Identities=19% Similarity=0.092 Sum_probs=53.2
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHH-hhhccCCCCCCCCCceEEcccccC-------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEE-ELLADNGGEAPVMPKFEVKDLESL------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~-~~~~~~~~~~~~~~~~~~~d~~~~------- 216 (322)
+++++|=-|++.|. .+..|++.|++|+.+|.+++.++...+...+ .+.. +.++.+|+.+.
T Consensus 8 ~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~~g~~---------~~~~~~Dv~~~~~v~~~~ 78 (260)
T d1h5qa_ 8 VNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEFGVK---------TKAYQCDVSNTDIVTKTI 78 (260)
T ss_dssp TTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHHHTCC---------EEEEECCTTCHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhCCc---------eEEEEccCCCHHHHHHHH
Confidence 57889999987765 4566777799999999998777665555433 3322 27788898764
Q ss_pred ------CCCccEEEEccccc
Q 020710 217 ------DGKYDTVVCLDVLI 230 (322)
Q Consensus 217 ------~~~fD~V~~~~~l~ 230 (322)
-+..|+++.+..+.
T Consensus 79 ~~~~~~~g~iDilVnnAg~~ 98 (260)
T d1h5qa_ 79 QQIDADLGPISGLIANAGVS 98 (260)
T ss_dssp HHHHHHSCSEEEEEECCCCC
T ss_pred HHHHHHhCCCcEeccccccc
Confidence 47899998876543
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.87 E-value=0.66 Score=37.17 Aligned_cols=70 Identities=23% Similarity=0.221 Sum_probs=50.8
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
+++++|=-|++.|. .+..|++.|++|+.+|.+++-++...+.... +.+++.|+.+.
T Consensus 4 ~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~-------------~~~~~~Dv~~~~~v~~~~~ 70 (242)
T d1cyda_ 4 SGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKECPG-------------IEPVCVDLGDWDATEKALG 70 (242)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHSTT-------------CEEEECCTTCHHHHHHHHT
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhcCC-------------CeEEEEeCCCHHHHHHHHH
Confidence 57889988988775 3566677799999999998776655443321 26788888765
Q ss_pred -CCCccEEEEccccc
Q 020710 217 -DGKYDTVVCLDVLI 230 (322)
Q Consensus 217 -~~~fD~V~~~~~l~ 230 (322)
-++.|+++.+..+.
T Consensus 71 ~~g~iDilVnnAg~~ 85 (242)
T d1cyda_ 71 GIGPVDLLVNNAALV 85 (242)
T ss_dssp TCCCCSEEEECCCCC
T ss_pred HcCCCeEEEECCccc
Confidence 37899999875543
|
| >d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: FkbM-like domain: Methyltransferase FkbM species: Methylobacillus flagellatus [TaxId: 405]
Probab=89.71 E-value=0.29 Score=42.55 Aligned_cols=49 Identities=10% Similarity=-0.061 Sum_probs=40.8
Q ss_pred CCCCeEEEECCCcccchHHHHhc----CCEEEEEeCCHHHHHHHHHHhHHhhh
Q 020710 147 LKGIAVCDAGCGTGSLAIPLAKQ----GAIVSASDISAAMVAEARKKAEEELL 195 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~~~~la~~----~~~v~gvD~s~~~l~~a~~~~~~~~~ 195 (322)
.++..++|||+-.|..+..++.. +.+|+++|+++...+..++++.....
T Consensus 211 ~kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~~n~~ 263 (395)
T d2py6a1 211 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTD 263 (395)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTT
T ss_pred CCCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHHhccc
Confidence 46789999999999988877653 46899999999999999998876543
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.70 E-value=0.82 Score=37.84 Aligned_cols=81 Identities=16% Similarity=0.037 Sum_probs=55.9
Q ss_pred CCCCeEEEECCCcccc---hHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-------
Q 020710 147 LKGIAVCDAGCGTGSL---AIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL------- 216 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~~---~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~------- 216 (322)
.+++.+|=-|++.|.- +..|++.|++|+.+|.+++.++.+.+.+....... .-..+.++.+|+.+.
T Consensus 10 L~gKvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~~~l~~~~~el~~~~~~~----~~~~~~~~~~Dvs~~~~v~~~~ 85 (297)
T d1yxma1 10 LQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPT----KQARVIPIQCNIRNEEEVNNLV 85 (297)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCTT----CCCCEEEEECCTTCHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhhccc----cCceEEEEeccCCCHHHHHHHH
Confidence 4688899999887763 45666779999999999988877766665432110 001236788888764
Q ss_pred ------CCCccEEEEcccccc
Q 020710 217 ------DGKYDTVVCLDVLIH 231 (322)
Q Consensus 217 ------~~~fD~V~~~~~l~~ 231 (322)
.+..|+++.+....+
T Consensus 86 ~~~~~~~G~iDiLVnnAg~~~ 106 (297)
T d1yxma1 86 KSTLDTFGKINFLVNNGGGQF 106 (297)
T ss_dssp HHHHHHHSCCCEEEECCCCCC
T ss_pred HHHHHHhCCeEEEEeeccccc
Confidence 378999998765433
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=89.46 E-value=0.58 Score=37.85 Aligned_cols=73 Identities=22% Similarity=0.150 Sum_probs=52.7
Q ss_pred CCCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-------
Q 020710 147 LKGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL------- 216 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~------- 216 (322)
.+++++|=-|++.|. .+..|++.|++|+.+|.+++.++...+.+ +.. +.++..|+.+.
T Consensus 3 L~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~---~~~---------~~~~~~Dv~~~~~v~~~~ 70 (254)
T d1hdca_ 3 LSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATAREL---GDA---------ARYQHLDVTIEEDWQRVV 70 (254)
T ss_dssp CCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT---GGG---------EEEEECCTTCHHHHHHHH
T ss_pred CCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh---CCc---------eEEEEcccCCHHHHHHHH
Confidence 468889999998874 46667778999999999987766554433 211 17888898764
Q ss_pred ------CCCccEEEEcccccc
Q 020710 217 ------DGKYDTVVCLDVLIH 231 (322)
Q Consensus 217 ------~~~fD~V~~~~~l~~ 231 (322)
-++.|+++.+..+.+
T Consensus 71 ~~~~~~~g~iDilVnnAg~~~ 91 (254)
T d1hdca_ 71 AYAREEFGSVDGLVNNAGIST 91 (254)
T ss_dssp HHHHHHHSCCCEEEECCCCCC
T ss_pred HHHHHHcCCccEEEecCcccc
Confidence 378999887655433
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=89.39 E-value=0.46 Score=38.51 Aligned_cols=78 Identities=22% Similarity=0.218 Sum_probs=56.3
Q ss_pred CCCCeEEEECCCcc---cchHHHHhcCCEEEEE-eCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC------
Q 020710 147 LKGIAVCDAGCGTG---SLAIPLAKQGAIVSAS-DISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL------ 216 (322)
Q Consensus 147 ~~~~~VLDvGcG~G---~~~~~la~~~~~v~gv-D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~------ 216 (322)
..+++||=-|++.| ..+..|++.|++|+.+ +-+.+.++...+.+.+.+... .++.+|+.+.
T Consensus 4 L~GK~alITGas~GIG~aia~~la~~G~~Vvi~~~~~~~~~~~~~~~~~~~g~~~---------~~~~~D~~~~~~v~~~ 74 (259)
T d1ja9a_ 4 LAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLGAQG---------VAIQADISKPSEVVAL 74 (259)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCE---------EEEECCTTSHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHHcCCCc---------eEecCCCCCHHHHHHH
Confidence 46888998887666 4566677779998765 566777777777777665433 7888998764
Q ss_pred -------CCCccEEEEcccccccC
Q 020710 217 -------DGKYDTVVCLDVLIHYP 233 (322)
Q Consensus 217 -------~~~fD~V~~~~~l~~~~ 233 (322)
-+..|+++.+....+..
T Consensus 75 ~~~~~~~~g~idilinnag~~~~~ 98 (259)
T d1ja9a_ 75 FDKAVSHFGGLDFVMSNSGMEVWC 98 (259)
T ss_dssp HHHHHHHHSCEEEEECCCCCCCCC
T ss_pred HHHHHHHcCCCcEEEecccccccc
Confidence 37899999877665543
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=89.18 E-value=0.78 Score=32.63 Aligned_cols=93 Identities=13% Similarity=0.082 Sum_probs=54.6
Q ss_pred CCcccchHHHHhc--CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-------CCCccEEEEcc
Q 020710 157 CGTGSLAIPLAKQ--GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------DGKYDTVVCLD 227 (322)
Q Consensus 157 cG~G~~~~~la~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------~~~fD~V~~~~ 227 (322)
||.|..+..+++. +..++.+|.+++.++..+.. + +.++.+|..+. -.+.+.+++..
T Consensus 6 ~G~g~~g~~l~~~L~~~~i~vi~~d~~~~~~~~~~----~-----------~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~ 70 (129)
T d2fy8a1 6 CGWSESTLECLRELRGSEVFVLAEDENVRKKVLRS----G-----------ANFVHGDPTRVSDLEKANVRGARAVIVNL 70 (129)
T ss_dssp ESCCHHHHHHHHTSCGGGEEEEESCTTHHHHHHHT----T-----------CEEEESCTTSHHHHHHTTCTTCSEEEECC
T ss_pred ECCCHHHHHHHHHHcCCCCEEEEcchHHHHHHHhc----C-----------ccccccccCCHHHHHHhhhhcCcEEEEec
Confidence 5667788888876 66789999999987665422 2 17888998764 36688888632
Q ss_pred cccccCcchHHH-HHHHHHhccCCeEEEEECCChhhHHHHHHh
Q 020710 228 VLIHYPQSKADG-MIAHLASLAEKRLILSFAPKTFYYDLLKRV 269 (322)
Q Consensus 228 ~l~~~~~~~~~~-~l~~l~~~~~~~~il~~~~~~~~~~~~~~~ 269 (322)
+++...- +...++++.+..-++....+.-....++..
T Consensus 71 -----~~d~~n~~~~~~~r~~~~~~~iia~~~~~~~~~~l~~~ 108 (129)
T d2fy8a1 71 -----ESDSETIHCILGIRKIDESVRIIAEAERYENIEQLRMA 108 (129)
T ss_dssp -----SSHHHHHHHHHHHHHHCSSSCEEEECSSGGGHHHHHHH
T ss_pred -----cchhhhHHHHHHHHHHCCCceEEEEEcCHHHHHHHHHC
Confidence 3333323 333334443443344444433333444443
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=88.99 E-value=0.19 Score=38.69 Aligned_cols=43 Identities=35% Similarity=0.393 Sum_probs=33.8
Q ss_pred CCCeEEEECCCc-ccchHHHHhc-CCEEEEEeCCHHHHHHHHHHh
Q 020710 148 KGIAVCDAGCGT-GSLAIPLAKQ-GAIVSASDISAAMVAEARKKA 190 (322)
Q Consensus 148 ~~~~VLDvGcG~-G~~~~~la~~-~~~v~gvD~s~~~l~~a~~~~ 190 (322)
++.+||=||+|+ |..+...+.. |++|+.+|+++..++..+...
T Consensus 28 ~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~l~ 72 (183)
T d1l7da1 28 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLG 72 (183)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTT
T ss_pred CCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhh
Confidence 578999999996 4455555544 999999999998888776654
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=88.98 E-value=0.49 Score=38.45 Aligned_cols=76 Identities=21% Similarity=0.178 Sum_probs=54.7
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
+++.+|=-|++.|. .+..|++.|++|+.+|.+++.++.+.+.+...+... ..+.++..|+.+.
T Consensus 4 ~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~~~~~------~~~~~~~~Dvt~~~~v~~~~~ 77 (264)
T d1spxa_ 4 AEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSE------QNVNSVVADVTTDAGQDEILS 77 (264)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCG------GGEEEEECCTTSHHHHHHHHH
T ss_pred CCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCc------CceEEEEccCCCHHHHHHHHH
Confidence 46778888887665 345666779999999999999988887776654321 1127888898764
Q ss_pred -----CCCccEEEEcccc
Q 020710 217 -----DGKYDTVVCLDVL 229 (322)
Q Consensus 217 -----~~~fD~V~~~~~l 229 (322)
-+..|+++.+...
T Consensus 78 ~~~~~~g~iDilvnnAG~ 95 (264)
T d1spxa_ 78 TTLGKFGKLDILVNNAGA 95 (264)
T ss_dssp HHHHHHSCCCEEEECCC-
T ss_pred HHHHHhCCCCEeeccccc
Confidence 3789999987544
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.82 E-value=0.67 Score=37.67 Aligned_cols=76 Identities=22% Similarity=0.242 Sum_probs=54.3
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
+++++|=.|++.|. .+..|+++|++|+.++.+++-++...+......... +.+...|..+.
T Consensus 13 ~GK~alITGassGIG~aiA~~la~~G~~Vil~~r~~~~l~~~~~~~~~~~~~~--------~~~~~~d~~~~~~~~~~~~ 84 (269)
T d1xu9a_ 13 QGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAAS--------AHYIAGTMEDMTFAEQFVA 84 (269)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCSE--------EEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHhhhhccc--------chhhhhhhhhHHHHHHHHH
Confidence 57899999999886 456667779999999999999888776654432211 15666666543
Q ss_pred -----CCCccEEEEcccccc
Q 020710 217 -----DGKYDTVVCLDVLIH 231 (322)
Q Consensus 217 -----~~~fD~V~~~~~l~~ 231 (322)
.+..|+++.+....+
T Consensus 85 ~~~~~~g~~~~li~nag~~~ 104 (269)
T d1xu9a_ 85 QAGKLMGGLDMLILNHITNT 104 (269)
T ss_dssp HHHHHHTSCSEEEECCCCCC
T ss_pred HHHHHhCCcccccccccccc
Confidence 478899888765544
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=88.68 E-value=0.53 Score=37.76 Aligned_cols=68 Identities=29% Similarity=0.273 Sum_probs=50.0
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
+++++|=-|++.|. .+..|++.|++|+.+|.+++.++.+.+... +.++.+|+.+.
T Consensus 4 ~gK~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~~~l~~~~~~~~--------------~~~~~~Dv~~~~~v~~~~~ 69 (242)
T d1ulsa_ 4 KDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAVG--------------AHPVVMDVADPASVERGFA 69 (242)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTT--------------CEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcC--------------CeEEEEecCCHHHHHHHHH
Confidence 47888988988775 355666779999999999887766544321 17788898764
Q ss_pred -----CCCccEEEEcccc
Q 020710 217 -----DGKYDTVVCLDVL 229 (322)
Q Consensus 217 -----~~~fD~V~~~~~l 229 (322)
-+..|+++.+..+
T Consensus 70 ~~~~~~g~iDilVnnAG~ 87 (242)
T d1ulsa_ 70 EALAHLGRLDGVVHYAGI 87 (242)
T ss_dssp HHHHHHSSCCEEEECCCC
T ss_pred HHHHhcCCceEEEECCcc
Confidence 3789999876554
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=88.61 E-value=0.43 Score=36.08 Aligned_cols=44 Identities=20% Similarity=0.059 Sum_probs=35.7
Q ss_pred CCCCCeEEEECCC--cccchHHHHhc-CCEEEEEeCCHHHHHHHHHH
Q 020710 146 SLKGIAVCDAGCG--TGSLAIPLAKQ-GAIVSASDISAAMVAEARKK 189 (322)
Q Consensus 146 ~~~~~~VLDvGcG--~G~~~~~la~~-~~~v~gvD~s~~~l~~a~~~ 189 (322)
..++.+||=.|+| .|..+..+++. |++|+++|.|++-++.+++.
T Consensus 26 l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~l 72 (179)
T d1qora2 26 IKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKA 72 (179)
T ss_dssp CCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHH
T ss_pred CCCCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHHhc
Confidence 3568899998666 56677888777 99999999999988887754
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=88.58 E-value=0.16 Score=38.97 Aligned_cols=45 Identities=31% Similarity=0.254 Sum_probs=34.8
Q ss_pred CCCCeEEEECC--CcccchHHHHhc-CCEEEEEeCCHHHHHHHHHHhH
Q 020710 147 LKGIAVCDAGC--GTGSLAIPLAKQ-GAIVSASDISAAMVAEARKKAE 191 (322)
Q Consensus 147 ~~~~~VLDvGc--G~G~~~~~la~~-~~~v~gvD~s~~~l~~a~~~~~ 191 (322)
.++.+||=-|+ |.|.++..+++. |++|+++.-|++-.+.+++.-.
T Consensus 30 ~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~~~lGa 77 (176)
T d1xa0a2 30 PERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVLGA 77 (176)
T ss_dssp GGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHTTC
T ss_pred CCCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHHHhccc
Confidence 45788999885 466677888866 9999999988888887775533
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=88.55 E-value=0.96 Score=33.86 Aligned_cols=44 Identities=18% Similarity=0.117 Sum_probs=33.0
Q ss_pred CCCCCeEEEECCCcccchHH-HHhc--CCEEEEEeCCHHHHHHHHHH
Q 020710 146 SLKGIAVCDAGCGTGSLAIP-LAKQ--GAIVSASDISAAMVAEARKK 189 (322)
Q Consensus 146 ~~~~~~VLDvGcG~G~~~~~-la~~--~~~v~gvD~s~~~l~~a~~~ 189 (322)
..++.+||=+|||.+..+.. +++. +..|+++|.+++-++.+++.
T Consensus 26 ~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~ 72 (175)
T d1cdoa2 26 VEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVF 72 (175)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT
T ss_pred CCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHc
Confidence 46789999999998665443 3333 45799999999988887754
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=88.23 E-value=0.54 Score=37.66 Aligned_cols=73 Identities=23% Similarity=0.242 Sum_probs=52.3
Q ss_pred CCCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-------
Q 020710 147 LKGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL------- 216 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~------- 216 (322)
.+++++|=.|++.|. .+..|++.|++|+.++.+.+.++...+.+ +.. +.+++.|+.+.
T Consensus 3 l~gK~alItGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~---~~~---------~~~~~~Dls~~~~i~~~~ 70 (241)
T d2a4ka1 3 LSGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAAL---EAE---------AIAVVADVSDPKAVEAVF 70 (241)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTC---CSS---------EEEEECCTTSHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHc---CCc---------eEEEEecCCCHHHHHHHH
Confidence 357889999998775 45566677999999999998766544432 211 26788898764
Q ss_pred ------CCCccEEEEcccccc
Q 020710 217 ------DGKYDTVVCLDVLIH 231 (322)
Q Consensus 217 ------~~~fD~V~~~~~l~~ 231 (322)
-++.|+++.+....+
T Consensus 71 ~~i~~~~g~iDiLinnAg~~~ 91 (241)
T d2a4ka1 71 AEALEEFGRLHGVAHFAGVAH 91 (241)
T ss_dssp HHHHHHHSCCCEEEEGGGGTT
T ss_pred HHHHHHhCCccEecccccccc
Confidence 278999998766544
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=88.18 E-value=0.6 Score=37.63 Aligned_cols=73 Identities=21% Similarity=0.172 Sum_probs=52.8
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
+++++|=-|++.|. .+..|++.|++|+.+|.+++.++.+.+..... .+ +.++.+|+.+.
T Consensus 5 ~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~---~~-------~~~~~~Dv~~~~~v~~~~~ 74 (251)
T d1zk4a1 5 DGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGTP---DQ-------IQFFQHDSSDEDGWTKLFD 74 (251)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCT---TT-------EEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCCC---Cc-------EEEEEccCCCHHHHHHHHH
Confidence 57788888877664 35566777999999999998887776655321 12 27888998764
Q ss_pred -----CCCccEEEEccccc
Q 020710 217 -----DGKYDTVVCLDVLI 230 (322)
Q Consensus 217 -----~~~fD~V~~~~~l~ 230 (322)
-+..|+++.+....
T Consensus 75 ~~~~~~G~iDiLVnnAg~~ 93 (251)
T d1zk4a1 75 ATEKAFGPVSTLVNNAGIA 93 (251)
T ss_dssp HHHHHHSSCCEEEECCCCC
T ss_pred HHHHHhCCceEEEeccccc
Confidence 37899999876553
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=88.05 E-value=0.49 Score=38.24 Aligned_cols=72 Identities=24% Similarity=0.241 Sum_probs=51.5
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
+++++|=-|++.|. .+..|++.|++|+.+|.+++.++...+.+... . .++..|+.+.
T Consensus 5 ~gK~alITGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~~~~---~---------~~~~~Dv~~~~~~~~~~~ 72 (253)
T d1hxha_ 5 QGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAELGER---S---------MFVRHDVSSEADWTLVMA 72 (253)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCTT---E---------EEECCCTTCHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCCC---e---------EEEEeecCCHHHHHHHHH
Confidence 57788888877764 45666777999999999998877665544221 1 5677787664
Q ss_pred -----CCCccEEEEcccccc
Q 020710 217 -----DGKYDTVVCLDVLIH 231 (322)
Q Consensus 217 -----~~~fD~V~~~~~l~~ 231 (322)
-+..|+++.+....+
T Consensus 73 ~~~~~~g~iDilVnnAG~~~ 92 (253)
T d1hxha_ 73 AVQRRLGTLNVLVNNAGILL 92 (253)
T ss_dssp HHHHHHCSCCEEEECCCCCC
T ss_pred HHHHHhCCCCeEEecccccC
Confidence 378999998776533
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=88.02 E-value=0.53 Score=38.06 Aligned_cols=72 Identities=21% Similarity=0.187 Sum_probs=52.5
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
+++++|=-|++.|. .+..|++.|++|+.+|.+++.++...+.+ +.. +.++.+|+.+.
T Consensus 4 ~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~---~~~---------~~~~~~Dvt~~~~v~~~~~ 71 (256)
T d1k2wa_ 4 DGKTALITGSARGIGRAFAEAYVREGARVAIADINLEAARATAAEI---GPA---------ACAIALDVTDQASIDRCVA 71 (256)
T ss_dssp TTEEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCHHHHHHHHHHH---CTT---------EEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh---CCc---------eEEEEeeCCCHHHHHHHHH
Confidence 47788988988775 45666777999999999988776665543 211 16788888764
Q ss_pred -----CCCccEEEEcccccc
Q 020710 217 -----DGKYDTVVCLDVLIH 231 (322)
Q Consensus 217 -----~~~fD~V~~~~~l~~ 231 (322)
-+..|+++.+....+
T Consensus 72 ~~~~~~g~iDilVnnAg~~~ 91 (256)
T d1k2wa_ 72 ELLDRWGSIDILVNNAALFD 91 (256)
T ss_dssp HHHHHHSCCCEEEECCCCCC
T ss_pred HHHHHhCCccEEEeeccccc
Confidence 378999998766544
|
| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Probab=87.77 E-value=0.83 Score=37.30 Aligned_cols=71 Identities=32% Similarity=0.264 Sum_probs=50.9
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
+++++|=-|++.|. .+..|++.|++|+.+|.+++.++...+.... .. .++..|+.+.
T Consensus 4 ~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~---~~---------~~~~~Dv~~~~~~~~~~~ 71 (276)
T d1bdba_ 4 KGEAVLITGGASGLGRALVDRFVAEGAKVAVLDKSAERLAELETDHGD---NV---------LGIVGDVRSLEDQKQAAS 71 (276)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGG---GE---------EEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcCC---Ce---------eEEecccccHHHHHHHHH
Confidence 47889988987765 3556667799999999999887765544322 11 6778887664
Q ss_pred -----CCCccEEEEccccc
Q 020710 217 -----DGKYDTVVCLDVLI 230 (322)
Q Consensus 217 -----~~~fD~V~~~~~l~ 230 (322)
-+..|+++.+..+.
T Consensus 72 ~~~~~~g~idilvnnAG~~ 90 (276)
T d1bdba_ 72 RCVARFGKIDTLIPNAGIW 90 (276)
T ss_dssp HHHHHHSCCCEEECCCCCC
T ss_pred HHHHHhCCccccccccccc
Confidence 37899999776543
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=87.74 E-value=0.53 Score=35.66 Aligned_cols=43 Identities=26% Similarity=0.203 Sum_probs=32.7
Q ss_pred CCCCCeEEEECC--CcccchHHHHhc-CCEEEEEeCCHHHHHHHHH
Q 020710 146 SLKGIAVCDAGC--GTGSLAIPLAKQ-GAIVSASDISAAMVAEARK 188 (322)
Q Consensus 146 ~~~~~~VLDvGc--G~G~~~~~la~~-~~~v~gvD~s~~~l~~a~~ 188 (322)
..++.+||=.|. |.|..+..+++. |+++++++-+++-.+.+++
T Consensus 23 ~~~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~~ 68 (183)
T d1pqwa_ 23 LSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSR 68 (183)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHT
T ss_pred CCCCCEEEEECCCCCcccccchhhccccccceeeeccccccccccc
Confidence 356789998773 467778888877 9999999888877766654
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=87.19 E-value=0.86 Score=36.80 Aligned_cols=75 Identities=25% Similarity=0.294 Sum_probs=52.3
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCC-HHHHHHHHHHhHHh-hhccCCCCCCCCCceEEcccccC------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDIS-AAMVAEARKKAEEE-LLADNGGEAPVMPKFEVKDLESL------ 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s-~~~l~~a~~~~~~~-~~~~~~~~~~~~~~~~~~d~~~~------ 216 (322)
+++.+|=-|++.|. .+..|++.|++|+.+|.+ +..++...+...+. +.. +.++..|+.+.
T Consensus 3 ~gK~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~g~~---------~~~~~~Dv~~~~~v~~~ 73 (260)
T d1x1ta1 3 KGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHGVK---------VLYDGADLSKGEAVRGL 73 (260)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHHHTSC---------EEEECCCTTSHHHHHHH
T ss_pred CcCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHHhcCCc---------EEEEECCCCCHHHHHHH
Confidence 57788877887775 455677789999999986 56666665555433 222 26788898764
Q ss_pred -------CCCccEEEEcccccc
Q 020710 217 -------DGKYDTVVCLDVLIH 231 (322)
Q Consensus 217 -------~~~fD~V~~~~~l~~ 231 (322)
-+..|+++.+..+.+
T Consensus 74 ~~~~~~~~G~iDiLVnnAG~~~ 95 (260)
T d1x1ta1 74 VDNAVRQMGRIDILVNNAGIQH 95 (260)
T ss_dssp HHHHHHHHSCCSEEEECCCCCC
T ss_pred HHHHHHHhCCCcEEEeeccccc
Confidence 378999998765433
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Probab=86.74 E-value=1.1 Score=36.21 Aligned_cols=75 Identities=21% Similarity=0.112 Sum_probs=53.3
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCH-HHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISA-AMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~------- 216 (322)
+++++|=-|++.|. .+..|++.|++|+.+|.+. ..++...+.+.+.+... .++..|+.+.
T Consensus 6 ~gK~alITGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~g~~~---------~~~~~Dvt~~~~v~~~~ 76 (261)
T d1geea_ 6 EGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVGGEA---------IAVKGDVTVESDVINLV 76 (261)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCEE---------EEEECCTTSHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHhcCCcE---------EEEEccCCCHHHHHHHH
Confidence 57788888888774 4566777799999999874 45666666665554332 6788898764
Q ss_pred ------CCCccEEEEcccccc
Q 020710 217 ------DGKYDTVVCLDVLIH 231 (322)
Q Consensus 217 ------~~~fD~V~~~~~l~~ 231 (322)
-++.|+++.+..+.+
T Consensus 77 ~~~~~~~G~iDiLVnnAG~~~ 97 (261)
T d1geea_ 77 QSAIKEFGKLDVMINNAGLEN 97 (261)
T ss_dssp HHHHHHHSCCCEEEECCCCCC
T ss_pred HHHHHHhCCCCEeeccceecC
Confidence 378999998765543
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=86.45 E-value=0.61 Score=35.02 Aligned_cols=45 Identities=27% Similarity=0.220 Sum_probs=33.0
Q ss_pred CCCCCeEEEECCCc-ccchHHHHhc-CC-EEEEEeCCHHHHHHHHHHh
Q 020710 146 SLKGIAVCDAGCGT-GSLAIPLAKQ-GA-IVSASDISAAMVAEARKKA 190 (322)
Q Consensus 146 ~~~~~~VLDvGcG~-G~~~~~la~~-~~-~v~gvD~s~~~l~~a~~~~ 190 (322)
..++.+||=.|||. |.++..+++. |+ .|+++|.+++-++.+++.-
T Consensus 26 ~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lG 73 (176)
T d2fzwa2 26 LEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFG 73 (176)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHT
T ss_pred CCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhC
Confidence 46789999999883 3345555555 64 6999999998888877643
|
| >d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Helicobacter pylori [TaxId: 210]
Probab=85.73 E-value=1.3 Score=35.60 Aligned_cols=73 Identities=21% Similarity=0.148 Sum_probs=49.9
Q ss_pred CCCCeEEEECCC----ccc-chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-----
Q 020710 147 LKGIAVCDAGCG----TGS-LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL----- 216 (322)
Q Consensus 147 ~~~~~VLDvGcG----~G~-~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~----- 216 (322)
.+++++|=.|++ .|. .+..|+++|++|+.+|.++...+.+++...+.. .. .+...|+...
T Consensus 3 L~gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~~~~~~~~~l~~~~~-~~---------~~~~~d~~~~~~~~~ 72 (274)
T d2pd4a1 3 LKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNESLEKRVRPIAQELN-SP---------YVYELDVSKEEHFKS 72 (274)
T ss_dssp TTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTTTHHHHHHHHHHTT-CC---------CEEECCTTCHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhCC-ce---------eEeeecccchhhHHH
Confidence 468899999863 343 355666779999999999766666555444322 21 6677776553
Q ss_pred --------CCCccEEEEcccc
Q 020710 217 --------DGKYDTVVCLDVL 229 (322)
Q Consensus 217 --------~~~fD~V~~~~~l 229 (322)
-+..|+++++...
T Consensus 73 ~~~~~~~~~g~id~lV~nag~ 93 (274)
T d2pd4a1 73 LYNSVKKDLGSLDFIVHSVAF 93 (274)
T ss_dssp HHHHHHHHTSCEEEEEECCCC
T ss_pred HHHHHHHHcCCCCeEEeeccc
Confidence 4789999987654
|
| >d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Escherichia coli [TaxId: 562]
Probab=85.28 E-value=1.5 Score=34.94 Aligned_cols=73 Identities=15% Similarity=0.090 Sum_probs=50.8
Q ss_pred CCCCeEEEECCCc--c---cchHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-----
Q 020710 147 LKGIAVCDAGCGT--G---SLAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL----- 216 (322)
Q Consensus 147 ~~~~~VLDvGcG~--G---~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~----- 216 (322)
.++++||=-|++. | ..+..|++.|++|+.+|.+++..+.+.+.....+.. .+...|..+.
T Consensus 3 L~gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~ 72 (258)
T d1qsga_ 3 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQLGSD----------IVLQCDVAEDASIDT 72 (258)
T ss_dssp TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTTHHHHHHHHHHTTCC----------CEEECCTTCHHHHHH
T ss_pred CCCCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHhhcCCc----------ceeecccchHHHHHH
Confidence 4688999998765 4 256778888999999999988777776655544322 4555565442
Q ss_pred --------CCCccEEEEcccc
Q 020710 217 --------DGKYDTVVCLDVL 229 (322)
Q Consensus 217 --------~~~fD~V~~~~~l 229 (322)
.+..|.++.+...
T Consensus 73 ~~~~~~~~~~~~d~~v~~a~~ 93 (258)
T d1qsga_ 73 MFAELGKVWPKFDGFVHSIGF 93 (258)
T ss_dssp HHHHHHTTCSSEEEEEECCCC
T ss_pred HHHHhhhcccccceEEEeecc
Confidence 4778888876543
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Probab=85.11 E-value=1 Score=36.08 Aligned_cols=68 Identities=26% Similarity=0.303 Sum_probs=48.7
Q ss_pred CCCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-------
Q 020710 147 LKGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL------- 216 (322)
Q Consensus 147 ~~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~------- 216 (322)
.+++++|=-|++.|. .+..|++.|++|..+|.+++..+.+++. + . .++..|+.+.
T Consensus 3 l~GK~alITGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~----~--~---------~~~~~Dv~~~~~v~~~~ 67 (248)
T d2d1ya1 3 FAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEGKEVAEAI----G--G---------AFFQVDLEDERERVRFV 67 (248)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTHHHHHHHH----T--C---------EEEECCTTCHHHHHHHH
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHc----C--C---------eEEEEeCCCHHHHHHHH
Confidence 457889988987765 3556677799999999998765544321 1 1 6778888764
Q ss_pred ------CCCccEEEEcccc
Q 020710 217 ------DGKYDTVVCLDVL 229 (322)
Q Consensus 217 ------~~~fD~V~~~~~l 229 (322)
-++.|+++.+..+
T Consensus 68 ~~~~~~~G~iDiLVnnAG~ 86 (248)
T d2d1ya1 68 EEAAYALGRVDVLVNNAAI 86 (248)
T ss_dssp HHHHHHHSCCCEEEECCCC
T ss_pred HHHHHhcCCCCeEEEeCcC
Confidence 3789999976544
|
| >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Thermus thermophilus [TaxId: 274]
Probab=84.70 E-value=1.3 Score=35.51 Aligned_cols=73 Identities=26% Similarity=0.146 Sum_probs=52.1
Q ss_pred CCCCeEEEECCC----ccc-chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-----
Q 020710 147 LKGIAVCDAGCG----TGS-LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL----- 216 (322)
Q Consensus 147 ~~~~~VLDvGcG----~G~-~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~----- 216 (322)
.+++++|=-|++ -|. .+..|++.|++|+..|.++...+.+++.....+. ..++..|+.+.
T Consensus 6 L~gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~~----------~~~~~~D~~~~~~v~~ 75 (256)
T d1ulua_ 6 LSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEKLAEALGG----------ALLFRADVTQDEELDA 75 (256)
T ss_dssp CTTCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHTTC----------CEEEECCTTCHHHHHH
T ss_pred CCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHhhhccCc----------ccccccccCCHHHHHH
Confidence 358899999964 343 5667778899999999998877776665544332 16778887664
Q ss_pred --------CCCccEEEEcccc
Q 020710 217 --------DGKYDTVVCLDVL 229 (322)
Q Consensus 217 --------~~~fD~V~~~~~l 229 (322)
-+..|+++.+..+
T Consensus 76 ~~~~~~~~~g~iDilVnnag~ 96 (256)
T d1ulua_ 76 LFAGVKEAFGGLDYLVHAIAF 96 (256)
T ss_dssp HHHHHHHHHSSEEEEEECCCC
T ss_pred HHHHHHHhcCCceEEEecccc
Confidence 3789998876544
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.82 E-value=1.7 Score=35.15 Aligned_cols=74 Identities=23% Similarity=0.276 Sum_probs=53.6
Q ss_pred CCeE-EEECCCccc---chHHHHhc-CCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-------
Q 020710 149 GIAV-CDAGCGTGS---LAIPLAKQ-GAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL------- 216 (322)
Q Consensus 149 ~~~V-LDvGcG~G~---~~~~la~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~------- 216 (322)
+++| |==|++.|. .+..|++. |++|+.++.+++.++.+.+.+...+.. +.++.+|+.+.
T Consensus 2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~---------~~~~~~Dvs~~~sv~~~~ 72 (275)
T d1wmaa1 2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLS---------PRFHQLDIDDLQSIRALR 72 (275)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTCC---------CEEEECCTTCHHHHHHHH
T ss_pred CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCc---------EEEEEEecCCHHHHHHHH
Confidence 4566 444555554 23456665 889999999999998888887765543 28899998775
Q ss_pred ------CCCccEEEEcccccc
Q 020710 217 ------DGKYDTVVCLDVLIH 231 (322)
Q Consensus 217 ------~~~fD~V~~~~~l~~ 231 (322)
-++.|+++.+..+.+
T Consensus 73 ~~~~~~~g~iDiLVnNAGi~~ 93 (275)
T d1wmaa1 73 DFLRKEYGGLDVLVNNAGIAF 93 (275)
T ss_dssp HHHHHHHSSEEEEEECCCCCC
T ss_pred HHHHHhcCCcEEEEEcCCcCC
Confidence 378999999877644
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Probab=83.56 E-value=1.5 Score=34.94 Aligned_cols=73 Identities=21% Similarity=0.113 Sum_probs=49.4
Q ss_pred CCCeEEEECCCccc---chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC--------
Q 020710 148 KGIAVCDAGCGTGS---LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------- 216 (322)
Q Consensus 148 ~~~~VLDvGcG~G~---~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------- 216 (322)
+++.+|=-|++.|. .+..|++.|++|+.+|.++.- .+.+...+.+.. +.++.+|+.+.
T Consensus 4 ~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~--~~~~~~~~~g~~---------~~~~~~Dvs~~~~v~~~~~ 72 (247)
T d2ew8a1 4 KDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPAP--EAEAAIRNLGRR---------VLTVKCDVSQPGDVEAFGK 72 (247)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCH--HHHHHHHHTTCC---------EEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchH--HHHHHHHHcCCc---------EEEEEeeCCCHHHHHHHHH
Confidence 57788888887664 456667779999999987642 233333333322 27788898764
Q ss_pred -----CCCccEEEEcccccc
Q 020710 217 -----DGKYDTVVCLDVLIH 231 (322)
Q Consensus 217 -----~~~fD~V~~~~~l~~ 231 (322)
-++.|+++.+..+.+
T Consensus 73 ~~~~~~G~iDilVnnAG~~~ 92 (247)
T d2ew8a1 73 QVISTFGRCDILVNNAGIYP 92 (247)
T ss_dssp HHHHHHSCCCEEEECCCCCC
T ss_pred HHHHHcCCCCEEEECCCCCC
Confidence 378999998766544
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=82.65 E-value=0.06 Score=40.51 Aligned_cols=93 Identities=16% Similarity=0.113 Sum_probs=49.7
Q ss_pred CeEEEECCCc-cc-chHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccCCCCccEEEEcc
Q 020710 150 IAVCDAGCGT-GS-LAIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESLDGKYDTVVCLD 227 (322)
Q Consensus 150 ~~VLDvGcG~-G~-~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~fD~V~~~~ 227 (322)
++|+=+|+|. |. ++..|++.|.+|+.++.++...+..+ ....... ........+..+..+.+|+|+..-
T Consensus 1 MkI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~~~~~~~----~~~~~~~-----~~~~~~~~~~~~~~~~~D~iii~v 71 (167)
T d1ks9a2 1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVN----LVETDGS-----IFNESLTANDPDFLATSDLLLVTL 71 (167)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSEEEEE----EECTTSC-----EEEEEEEESCHHHHHTCSEEEECS
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCceEEEEcCHHHhhhhc----cccCCcc-----ccccccccchhhhhcccceEEEee
Confidence 4788999985 33 45566677999999998764221100 0000000 000011111111146799999643
Q ss_pred cccccCcchHHHHHHHHHhccCCe-EEEEE
Q 020710 228 VLIHYPQSKADGMIAHLASLAEKR-LILSF 256 (322)
Q Consensus 228 ~l~~~~~~~~~~~l~~l~~~~~~~-~il~~ 256 (322)
+....+..++.+...+.++ .|+.+
T Consensus 72 -----ka~~~~~~~~~l~~~~~~~~~Iv~~ 96 (167)
T d1ks9a2 72 -----KAWQVSDAVKSLASTLPVTTPILLI 96 (167)
T ss_dssp -----CGGGHHHHHHHHHTTSCTTSCEEEE
T ss_pred -----cccchHHHHHhhccccCcccEEeec
Confidence 3333668888888776544 34444
|
| >d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Bacterial sepiapterin reductase species: Chlorobium tepidum [TaxId: 1097]
Probab=82.31 E-value=2 Score=34.04 Aligned_cols=71 Identities=18% Similarity=0.183 Sum_probs=51.5
Q ss_pred EEEECCCccc---chHHHHhcCCE-------EEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-----
Q 020710 152 VCDAGCGTGS---LAIPLAKQGAI-------VSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL----- 216 (322)
Q Consensus 152 VLDvGcG~G~---~~~~la~~~~~-------v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~----- 216 (322)
||=-|++.|. .+..|++.|++ |+.++.+++-++...+.+...+... .++.+|+.+.
T Consensus 4 vlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~~g~~~---------~~~~~Dvt~~~~v~~ 74 (240)
T d2bd0a1 4 LLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGALT---------DTITADISDMADVRR 74 (240)
T ss_dssp EEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTCEE---------EEEECCTTSHHHHHH
T ss_pred EEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHHHHhcCCcE---------EEEEecCCCHHHHHH
Confidence 5666777765 34556666876 8999999998888877776655433 7788898774
Q ss_pred --------CCCccEEEEcccccc
Q 020710 217 --------DGKYDTVVCLDVLIH 231 (322)
Q Consensus 217 --------~~~fD~V~~~~~l~~ 231 (322)
-+..|+++.+..+.+
T Consensus 75 ~~~~~~~~~g~iDilvnnAg~~~ 97 (240)
T d2bd0a1 75 LTTHIVERYGHIDCLVNNAGVGR 97 (240)
T ss_dssp HHHHHHHHTSCCSEEEECCCCCC
T ss_pred HHHHHHHHcCCcceeeccccccc
Confidence 478999998765533
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=81.92 E-value=0.55 Score=40.12 Aligned_cols=28 Identities=21% Similarity=0.272 Sum_probs=20.9
Q ss_pred cccccCCHHHHHHHHHHCC-CEEEEEeee
Q 020710 280 TRAYLHAEADVERALQKVG-WKIRKRGLI 307 (322)
Q Consensus 280 ~~~~~~~~~~~~~~l~~aG-f~vv~~~~~ 307 (322)
...|..+.+|++..+++.| |++.+.+..
T Consensus 252 ~P~Y~ps~eEv~~~ie~~gsF~i~~~e~~ 280 (359)
T d1m6ex_ 252 IPQYTPSPTEVEAEILKEGSFLIDHIEAS 280 (359)
T ss_dssp CCCBCCCSHHHHHHHHHTTTBCCEEEEEE
T ss_pred CccccCCHHHHHHHhccCCCeeeeeeEee
Confidence 3456779999999999977 666666544
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=81.05 E-value=0.65 Score=34.98 Aligned_cols=43 Identities=21% Similarity=0.241 Sum_probs=33.2
Q ss_pred CCCeEEEECC--CcccchHHHHhc-CCEEEEEeCCHHHHHHHHHHh
Q 020710 148 KGIAVCDAGC--GTGSLAIPLAKQ-GAIVSASDISAAMVAEARKKA 190 (322)
Q Consensus 148 ~~~~VLDvGc--G~G~~~~~la~~-~~~v~gvD~s~~~l~~a~~~~ 190 (322)
++.+||=-|+ |.|.++..|++. |++|+++.-|++-.+.+++.-
T Consensus 23 ~~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k~~~~~~lG 68 (167)
T d1tt7a2 23 EKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQLG 68 (167)
T ss_dssp GGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHHHT
T ss_pred CCCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHHHHHHHhhc
Confidence 3557887664 567788888887 999999999888777776554
|
| >d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermotoga maritima [TaxId: 2336]
Probab=80.41 E-value=2.4 Score=33.33 Aligned_cols=64 Identities=19% Similarity=0.110 Sum_probs=46.2
Q ss_pred CCCeEEEECCCcccc---hHHHHhcCCEEEEEeCCHHHHHHHHHHhHHhhhccCCCCCCCCCceEEcccccC-------C
Q 020710 148 KGIAVCDAGCGTGSL---AIPLAKQGAIVSASDISAAMVAEARKKAEEELLADNGGEAPVMPKFEVKDLESL-------D 217 (322)
Q Consensus 148 ~~~~VLDvGcG~G~~---~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-------~ 217 (322)
+++++|=-|++.|.- +..|++.|++|+.+|.+++.++.. + . ++...|+.+. -
T Consensus 3 kgK~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~~~l~~~-------~--~---------~~~~~Dv~~~~~~~~~~~ 64 (234)
T d1o5ia_ 3 RDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELLKRS-------G--H---------RYVVCDLRKDLDLLFEKV 64 (234)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHT-------C--S---------EEEECCTTTCHHHHHHHS
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHhc-------C--C---------cEEEcchHHHHHHHHHHh
Confidence 578899999887753 456667799999999997654422 1 1 6777787654 4
Q ss_pred CCccEEEEcccc
Q 020710 218 GKYDTVVCLDVL 229 (322)
Q Consensus 218 ~~fD~V~~~~~l 229 (322)
++.|+++.+...
T Consensus 65 g~iD~lVnnAG~ 76 (234)
T d1o5ia_ 65 KEVDILVLNAGG 76 (234)
T ss_dssp CCCSEEEECCCC
T ss_pred CCCcEEEecccc
Confidence 789999987544
|