Citrus Sinensis ID: 020713

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320--
Protein Sequence
MERKEVTKTKNNNNMGSSPFADHLSTGSQLRGVFDLYEGEKGSLGFMELLGVQDFGSSSPPSSSLFDMVQFQAQNQVPSKGASASSTVNVTKIECSELLNQPATPNSSSISSASSEALNDEQVKVEEHVHDEQNQQKTKKQLKPKKTNQKRQREPRFAFMTKSEVDHLEDGYRWRKYGQKAVKDSPFPRSYYRCTSASCNVKKRVERSYTDPSIVVTTYEGQHNHPSPLLPRPTLGGVPHAGNGVVGSSFGMPMPAAFSQQQLPSLVNSLLPMNFGSSFINGPTTASFLHERRFCTPAAGTDLLKDHGLLQDIVPSHMLREE
Secondary Structure (PSIPRED)
ccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccHHHHHHHHcccccccccccccccccEEEEEccccccccccccccccccccccccccccccEEcccccccccccEEEccccccEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccEEEEEcccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccccccccccHHHcccEEEccccccccEEEEccccccccEEEEEccccccEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccHHHcccc
Coil and Loop (DISEMBL)
merkevtktknnnnmgsspfadhlstgsqlrgvfdlyegekgslGFMELLgvqdfgsssppssslfdMVQFQaqnqvpskgasasstVNVTKIECsellnqpatpnsssissassealnDEQVKVEEHVHDeqnqqktkkqlkpkktnqkrqreprfafmtksevdhledgyrwrkygqkavkdspfprsyyrctsascnvkkrversytdpsivvttyegqhnhpspllprptlggvphagngvvgssfgmpmpaafsqqqlpslvnsllpmnfgssfingpttasflherrfctpaagtdllkdhgllqdivpshmlree
Flexible Loop (DISEMBL)
merkevtktknnnnmgsspfadhlstGSQLRGVFDLYEGEKGSLGFMELLGVQDFGSSSPPSSSLFDMVQFQAQNQVPSKGASASSTVNVTKIECSELLNQPATPNSSSISSASSEALNDEQVKVEEHvhdeqnqqktkkqlkpkktnqkrqreprfafmtksevdhledgyrwrkygqkavkdspfprsyyrctsascnvkkrversyTDPSIVVTTYEGQHNHPSPLLPRPTLGGVPHAGNGVVGSSFGMPMPAAFSQQQLPSLVNSLLPMNFGSSFINGPTTASFLHERRFCTPAAGtdllkdhgllqdivpshmlree
Low Complexity Region (SEG)
MERKEVTKTKNNNNMGSSPFADHLSTGSQLRGVFDLYEGEKGSLGFMELLGVQDFGsssppsssLFDMVQFQAQNQVPSKGASASSTVNVTKIECSELLNQPATPNsssissassEALNDEQVKVEEHVHDEqnqqktkkqlkpkktnqkRQREPRFAFMTKSEVDHLEDGYRWRKYGQKAVKDSPFPRSYYRCTSASCNVKKRVERSYTDPSIVVTTYEGQHNHPSPLLPRPTLGGVPHAGNGVVGSSFGMPMPAAFSQQQLPSLVNSLLPMNFGSSFINGPTTASFLHERRFCTPAAGTDLLKDHGLLQDIVPSHMLREE
Disordered region (IsUnstruct)
*****************************LRGVFDLYEGEKGSLGFMELLGVQ***************************************************************************************************************VDHLEDGYRWRKYGQKAVKDSPFPRSYYRCTSASCNVKKRVERSYTDPSIVVTTYE********************************************SLVNSLLPMNFGSSFINGPTTASFLHERRFCTPAAGTDLLKDHGLLQDIV********
Disordered Region (DISOPRED)
**************************************************************************************************************************************************************FMTKSEVDHLEDGYRWRKYGQKAVKDSPFPRSYYRCTSASCNVKKRVERSYTDPSIVVTTYEGQHNH************************************************************************************LQDIVPSHML***
Disordered Region (DISEMBL)
**********NNNNMGSSPFADHLSTGSQLRGVFDLYEGEKGSLGFMELLGVQDFGSSSPPSSSLFDMVQFQAQ*************VNVTKIECSELLN**********************VKVE**************************REPRFAFMTKSEVDHLEDGYRWRKYGQKAVKDSPFPRSYYRCTSASCNVKKRVERSYTDPSIVVTTYEGQHNHPSPLLPRPTLGGVPHAGNGVVGSSFGMPMPAAFSQQQLPSLVNSLLPMNFGSSFINGPTTASFLHERRFCTPAAGTDLLKDHGLLQDIVPSHMLREE
Disordered Region (DISPRO)
****EVTK************************************************************************************************************************************************REPRFAFMTKSEVDHLEDGYRWRKYGQKAVKDSPFPRSYYRCTSASCNVKKRVERSYTDPSIVVTTYEGQH*************************************************************************************L**D**********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MERKEVTKTKNNNNMGSSPFADHLSTGSQLRGVFDLYEGEKGSLGFMELLGVQDFGSSSPPSSSLFDMVQFQAQNQVPSKGASASSTVNVTKIECSELLNQPATPNSSSISSASSEALNDEQVKVEEHVHDEQNQQKTKKQLKPKKTNQKRQREPRFAFMTKSEVDHLEDGYRWRKYGQKAVKDSPFPRSYYRCTSASCNVKKRVERSYTDPSIVVTTYEGQHNHPSPLLPRPTLGGVPHAGNGVVGSSFGMPMPAAFSQQQLPSLVNSLLPMNFGSSFINGPTTASFLHERRFCTPAAGTDLLKDHGLLQDIVPSHMLREE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	322	2.2.26 [Sep-21-2011]
O22900	337	Probable WRKY transcripti	yes	no	0.885	0.845	0.495	2e-59
Q93WV6	277	Probable WRKY transcripti	no	no	0.652	0.758	0.439	7e-43
Q9FGZ4	399	Probable WRKY transcripti	no	no	0.680	0.548	0.484	5e-41
Q93WV4	282	Probable WRKY transcripti	no	no	0.605	0.691	0.469	5e-40
Q8VWJ2	318	Probable WRKY transcripti	no	no	0.298	0.301	0.75	2e-39
Q9C983	287	Probable WRKY transcripti	no	no	0.509	0.571	0.522	1e-36
Q9FL26	326	Probable WRKY transcripti	no	no	0.251	0.248	0.753	6e-34
Q9ZQ70	513	Probable WRKY transcripti	no	no	0.450	0.282	0.423	2e-27
Q9XI90	514	Probable WRKY transcripti	no	no	0.444	0.278	0.439	1e-26
Q9SVB7	304	Probable WRKY transcripti	no	no	0.329	0.348	0.572	2e-26

>sp|O22900|WRK23_ARATH Probable WRKY transcription factor 23 OS=Arabidopsis thaliana GN=WRKY23 PE=2 SV=1

 Score =  229 bits (584), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 157/317 (49%), Positives = 185/317 (58%), Gaps = 32/317 (10%)

Query: 35  DLYEGEKGSLGFMELLGVQ---DFGSSSPPSSSLFDMVQFQAQNQVPSKGASA-----SS 86
           DL   E+ SLGFMELL  Q   DF + SP S  L                +S      S 
Sbjct: 24  DLAAAERHSLGFMELLSSQQHQDFATVSPHSFLLQTSQPQTQTQPSAKLSSSIIQAPPSE 83

Query: 87  TVNVTKIE--CSE--LLNQPATPNSSSISSASSEALNDEQVKVEEHVHDEQN----QQKT 138
            +  +K+E  CS+  L+N PATPNSSSISSASSEALN+E+ K E++  +       +  T
Sbjct: 84  QLVTSKVESLCSDHLLINPPATPNSSSISSASSEALNEEKPKTEDNEEEGGEDQQEKSHT 143

Query: 139 KKQLKPKKTNQKRQREPRFAFMTKSEVDHLEDGYRWRKYGQKAVKDSPFPRSYYRCTSAS 198
           KKQLK KK NQKRQRE R AFMTKSEVDHLEDGYRWRKYGQKAVK+SPFPRSYYRCT+AS
Sbjct: 144 KKQLKAKKNNQKRQREARVAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTTAS 203

Query: 199 CNVKKRVERSYTDPSIVVTTYEGQHNHPSPLLPRP--------TLGGVPHAGNG-----V 245
           CNVKKRVERS+ DPS VVTTYEGQH H SPL  RP        + G     GNG     +
Sbjct: 204 CNVKKRVERSFRDPSTVVTTYEGQHTHISPLTSRPISTGGFFGSSGAASSLGNGCFGFPI 263

Query: 246 VGSSFGMPMPAAFSQQQLPSLVNSLLPMNFGSSFINGPTTASFLHERRFCTPAAGTDLLK 305
            GS+   P      Q         L+    G +         +  + R         L+K
Sbjct: 264 DGSTLISPQFQQLVQYHHQQQQQELMSCFGGVNEYLNSHANEYGDDNRV---KKSRVLVK 320

Query: 306 DHGLLQDIVPSHMLREE 322
           D+GLLQD+VPSHML+EE
Sbjct: 321 DNGLLQDVVPSHMLKEE 337

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.
Arabidopsis thaliana (taxid: 3702)

>sp|Q93WV6|WRK68_ARATH Probable WRKY transcription factor 68 OS=Arabidopsis thaliana GN=WRKY68 PE=2 SV=1

 Score =  174 bits (442), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 105/239 (43%), Positives = 146/239 (61%), Gaps = 29/239 (12%)

Query: 98  LLNQPATPNSSSISSASSEALNDEQVKVEEHVHDEQNQQKTKKQLKPKKTNQKRQREPRF 157
           L++ P TPNSSS     SEA+N +  + E+   ++Q++ K + +       Q +++ P+ 
Sbjct: 53  LMHFPTTPNSSS-----SEAVNGDDEEEEDGE-EQQHKTKKRFKFTKMSRKQTKKKVPKV 106

Query: 158 AFMTKSEVDHLEDGYRWRKYGQKAVKDSPFPRSYYRCTSASCNVKKRVERSYTDPSIVVT 217
           +F+T+SEV HL+DGY+WRKYGQK VKDSPFPR+YYRCT+  C+VKKRVERS++DPS V+T
Sbjct: 107 SFITRSEVLHLDDGYKWRKYGQKPVKDSPFPRNYYRCTTTWCDVKKRVERSFSDPSSVIT 166

Query: 218 TYEGQHNHPSPLLPRPTLGGVPHAGNGVVGSSFGMP-MPAAF-----SQQQLPSLVNSLL 271
           TYEGQH HP PLL  P  G  P  G+    +  G+P +P         QQQ PS      
Sbjct: 167 TYEGQHTHPRPLLIMPKEGSSPSNGSA-SRAHIGLPTLPPQLLDYNNQQQQAPS------ 219

Query: 272 PMNFGSSFIN--------GPTTASFLHERRFCTPAAGTDLLKDHGLLQDIVPSHMLREE 322
             +FG+ +IN               + + R      G  L+KDHGLLQD+VPSH+++EE
Sbjct: 220 --SFGTEYINRQEKGINHDDDDDHVVKKSRTRDLLDGAGLVKDHGLLQDVVPSHIIKEE 276

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FGZ4|WRK48_ARATH Probable WRKY transcription factor 48 OS=Arabidopsis thaliana GN=WRKY48 PE=2 SV=1

 Score =  168 bits (426), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 124/256 (48%), Positives = 160/256 (62%), Gaps = 37/256 (14%)

Query: 92  KIECSELLNQ-PATPNSSSISSASSEALNDEQ------VKVEEHVHDEQNQQKTKKQLKP 144
           + E SE++N  P +PNS+S+SS+S+EA ND        VK +E    +Q Q+ TK QLK 
Sbjct: 137 QAESSEVVNTTPTSPNSTSVSSSSNEAANDNNSGKEVTVKDQEEGDQQQEQKGTKPQLKA 196

Query: 145 KKTNQKRQREPRFAFMTKSEVDHLEDGYRWRKYGQKAVKDSPFPRSYYRCTSASCNVKKR 204
           KK NQK+ RE RFAF+TKS++D+L+DGYRWRKYGQKAVK+SP+PRSYYRCT+  C VKKR
Sbjct: 197 KKKNQKKAREARFAFLTKSDIDNLDDGYRWRKYGQKAVKNSPYPRSYYRCTTVGCGVKKR 256

Query: 205 VERSYTDPSIVVTTYEGQHNHPSPLLPRPTLGGVP-----HAGNGVVGSSFGMPMP-AAF 258
           VERS  DPSIV+TTYEGQH HP P+ PR  +G +      H       SSF +P P    
Sbjct: 257 VERSSDDPSIVMTTYEGQHTHPFPMTPRGHIGMLTSPILDHGATTASSSSFSIPQPRYLL 316

Query: 259 SQQQLPSLV---NSLLPMNFGSS---FINGPTTASFLHERRFCTPAAGTDL--------- 303
           +Q   P  +   NSL  +N  SS   F+N   ++SF        P  G D+         
Sbjct: 317 TQHHQPYNMYNNNSLSMINRRSSDGTFVNPGPSSSF--------PGFGYDMSQASTSTSS 368

Query: 304 -LKDHGLLQDIVPSHM 318
            ++DHGLLQDI+PS +
Sbjct: 369 SIRDHGLLQDILPSQI 384

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93WV4|WRK71_ARATH Probable WRKY transcription factor 71 OS=Arabidopsis thaliana GN=WRKY71 PE=2 SV=1

 Score =  165 bits (417), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 100/213 (46%), Positives = 132/213 (61%), Gaps = 18/213 (8%)

Query: 116 EALNDEQVKVEEHVHDEQNQQKTKKQL--KPKKTNQKRQREPRFAFMTKSEVDHLEDGYR 173
           E  ND+  ++E++  D     ++ KQL  + KK  +K++RE R AFMTKSE+DHLEDGYR
Sbjct: 81  ENTNDKSDQMEDNEGDLHGVGESSKQLTKQGKKKGEKKEREVRVAFMTKSEIDHLEDGYR 140

Query: 174 WRKYGQKAVKDSPFPRSYYRCTSASCNVKKRVERSYTDPSIVVTTYEGQHNHPSPLLPRP 233
           WRKYGQKAVK+SP+PRSYYRCT+  CNVKKRVERS+ DPSIV+TTYEG+HNHP P     
Sbjct: 141 WRKYGQKAVKNSPYPRSYYRCTTQKCNVKKRVERSFQDPSIVITTYEGKHNHPIP----S 196

Query: 234 TLGGVPHAGNGVVGSSFGMPMPAAFSQQQLPSLVNSLLPMNFGS----SFINGPTTASFL 289
           TL G   A + +V    G  +  +F +     L+    P N+ S    S+ +G  T+S+ 
Sbjct: 197 TLRGTVAAEHLLVHRGGGGSLLHSFPRHHQDFLMMKHSPANYQSVGSLSYEHGHGTSSY- 255

Query: 290 HERRFCTPAAGTDLLKDHGLLQDIVPSHMLREE 322
                         + D+GLLQDIVPS   + E
Sbjct: 256 -------NFNNNQPVVDYGLLQDIVPSMFSKNE 281

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VWJ2|WRK28_ARATH Probable WRKY transcription factor 28 OS=Arabidopsis thaliana GN=WRKY28 PE=2 SV=1

 Score =  162 bits (411), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 72/96 (75%), Positives = 83/96 (86%)

Query: 133 QNQQKTKKQLKPKKTNQKRQREPRFAFMTKSEVDHLEDGYRWRKYGQKAVKDSPFPRSYY 192
           +  Q +KK  K KKT  K+QREPR +FMTKSEVDHLEDGYRWRKYGQKAVK+SP+PRSYY
Sbjct: 136 EEDQISKKVGKTKKTEVKKQREPRVSFMTKSEVDHLEDGYRWRKYGQKAVKNSPYPRSYY 195

Query: 193 RCTSASCNVKKRVERSYTDPSIVVTTYEGQHNHPSP 228
           RCT+  CNVKKRVERS+ DP++V+TTYEGQHNHP P
Sbjct: 196 RCTTQKCNVKKRVERSFQDPTVVITTYEGQHNHPIP 231

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C983|WRK57_ARATH Probable WRKY transcription factor 57 OS=Arabidopsis thaliana GN=WRKY57 PE=2 SV=1

 Score =  154 bits (388), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 93/178 (52%), Positives = 110/178 (61%), Gaps = 14/178 (7%)

Query: 142 LKPKKTNQKRQREPRFAFMTKSEVDHLEDGYRWRKYGQKAVKDSPFPRSYYRCTSASCNV 201
           +K KK  QKR R+PRFAFMTKS+VD+LEDGYRWRKYGQKAVK+SPFPRSYYRCT++ C V
Sbjct: 120 VKEKKKAQKRIRQPRFAFMTKSDVDNLEDGYRWRKYGQKAVKNSPFPRSYYRCTNSRCTV 179

Query: 202 KKRVERSYTDPSIVVTTYEGQHNHPSPLLPRPTLGGVPHAGNGVVGSSFGMPMPAAFSQQ 261
           KKRVERS  DPSIV+TTYEGQH H +   PR   GG+  A +    +S     P   +  
Sbjct: 180 KKRVERSSDDPSIVITTYEGQHCHQTIGFPR---GGILTAHDPHSFTSHHHLPPPLPNPY 236

Query: 262 QLPSLVNSL-LPMNFGSSFINGPTTASFLHERRFCTPAAGTDLLKDHGLLQDIVPSHM 318
               L++ L    N  S  +  PTT          TPA  T    + GLL DIVP  M
Sbjct: 237 YYQELLHQLHRDNNAPSPRLPRPTTED--------TPAVST--PSEEGLLGDIVPQTM 284

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FL26|WRKY8_ARATH Probable WRKY transcription factor 8 OS=Arabidopsis thaliana GN=WRKY8 PE=2 SV=1

 Score =  144 bits (364), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 61/81 (75%), Positives = 70/81 (86%)

Query: 155 PRFAFMTKSEVDHLEDGYRWRKYGQKAVKDSPFPRSYYRCTSASCNVKKRVERSYTDPSI 214
           PR +FMTK+EVDHLEDGYRWRKYGQKAVK+SP+PRSYYRCT+  CNVKKRVERSY DP++
Sbjct: 169 PRVSFMTKTEVDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCNVKKRVERSYQDPTV 228

Query: 215 VVTTYEGQHNHPSPLLPRPTL 235
           V+TTYE QHNHP P   R  +
Sbjct: 229 VITTYESQHNHPIPTNRRTAM 249

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZQ70|WRKY3_ARATH Probable WRKY transcription factor 3 OS=Arabidopsis thaliana GN=WRKY3 PE=2 SV=1

 Score =  123 bits (308), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 69/163 (42%), Positives = 91/163 (55%), Gaps = 18/163 (11%)

Query: 70  QFQAQNQVPSKGASASSTVNVTKIECSELLNQPATPNSSSISSAS-SEALNDEQVKVEEH 128
           QFQ  N   +K      T  VT  E               +S AS SE + + +  V E 
Sbjct: 326 QFQTSNSSLNKSKRDQETSQVTTTE--------------QMSEASDSEEVGNAETSVGER 371

Query: 129 VHDEQNQQKTKKQLK---PKKTNQKRQREPRFAFMTKSEVDHLEDGYRWRKYGQKAVKDS 185
             DE + ++   +++   P  ++ +   EPR    T SEVD L+DGYRWRKYGQK VK +
Sbjct: 372 HEDEPDPKRRNTEVRVSEPVASSHRTVTEPRIIVQTTSEVDLLDDGYRWRKYGQKVVKGN 431

Query: 186 PFPRSYYRCTSASCNVKKRVERSYTDPSIVVTTYEGQHNHPSP 228
           P+PRSYY+CT+  C V+K VER+ TDP  VVTTYEG+HNH  P
Sbjct: 432 PYPRSYYKCTTPDCGVRKHVERAATDPKAVVTTYEGKHNHDVP 474

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9XI90|WRKY4_ARATH Probable WRKY transcription factor 4 OS=Arabidopsis thaliana GN=WRKY4 PE=1 SV=2

 Score =  120 bits (302), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 65/148 (43%), Positives = 89/148 (60%), Gaps = 5/148 (3%)

Query: 85  SSTVNVTKIECSELLNQPATPNSSSISSASSEALNDEQVKVEEHVHDEQNQQKTKKQLKP 144
           +++ N TK E  E ++Q  T    S +S   E  N E   V E   +E + ++   +++ 
Sbjct: 322 TNSSNKTKREQHEAVSQATTTEHLSEASDGEEVGNGE-TDVREKDENEPDPKRRSTEVRI 380

Query: 145 KK----TNQKRQREPRFAFMTKSEVDHLEDGYRWRKYGQKAVKDSPFPRSYYRCTSASCN 200
            +     + +   EPR    T SEVD L+DGYRWRKYGQK VK +P+PRSYY+CT+  C 
Sbjct: 381 SEPAPAASHRTVTEPRIIVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCG 440

Query: 201 VKKRVERSYTDPSIVVTTYEGQHNHPSP 228
           V+K VER+ TDP  VVTTYEG+HNH  P
Sbjct: 441 VRKHVERAATDPKAVVTTYEGKHNHDLP 468

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SVB7|WRK13_ARATH Probable WRKY transcription factor 13 OS=Arabidopsis thaliana GN=WRKY13 PE=2 SV=1

 Score =  120 bits (300), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 63/110 (57%), Positives = 73/110 (66%), Gaps = 4/110 (3%)

Query: 130 HDEQNQQK--TKKQLKPKKTNQKRQ-REPRFAFMTKSEVDHLEDGYRWRKYGQKAVKDSP 186
           HD+ N         LK KK   +R+ REPRF F T SEVD L+DGYRWRKYGQK VK++ 
Sbjct: 181 HDKHNTASLGVVSSLKMKKLKTRRKVREPRFCFKTLSEVDVLDDGYRWRKYGQKVVKNTQ 240

Query: 187 FPRSYYRCTSASCNVKKRVERSYTDPSIVVTTYEGQHNH-PSPLLPRPTL 235
            PRSYYRCT   C VKKRVER   DP +V+TTYEG+H H PS  L   +L
Sbjct: 241 HPRSYYRCTQDKCRVKKRVERLADDPRMVITTYEGRHLHSPSNHLDDDSL 290

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	322
294861116	303	WRKY1 [Hevea brasiliensis]	0.931	0.990	0.64	1e-100
255548389	317	WRKY transcription factor, putative [Ric	0.956	0.971	0.606	1e-87
259121391	317	WRKY transcription factor 13 [(Populus t	0.947	0.962	0.580	1e-77
117582134	317	WRKY transcription factor [Populus tremu	0.940	0.955	0.583	1e-77
224064606	301	predicted protein [Populus trichocarpa]	0.891	0.953	0.574	2e-75
259121431	276	WRKY transcription factor 33 [(Populus t	0.819	0.956	0.625	6e-74
255640394	322	unknown [Glycine max]	0.968	0.968	0.548	2e-73
357442207	325	WRKY transcription factor [Medicago trun	0.869	0.861	0.562	3e-73
351728066	323	WRKY54 [Glycine max] gi|83630943|gb|ABC2	0.968	0.965	0.516	6e-73
225432004	309	PREDICTED: probable WRKY transcription f	0.925	0.964	0.542	8e-72

>gi|294861116|gb|ADF45433.1| WRKY1 [Hevea brasiliensis]

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 208/325 (64%), Positives = 245/325 (75%), Gaps = 25/325 (7%)

Query: 1   MERKEVTKTKNNNNMGSSPFADHLSTGSQLRGVFDLYEGEKGSLGFMELLGVQDFGSSSP 60
           ME KE  + K +N +GSS F D+  +    +GVFD  EG+K SLGFMELLG+QDF     
Sbjct: 1   MEGKE--EVKIDNIVGSSTFPDNTQSSYPFQGVFDFCEGDKSSLGFMELLGMQDF----- 53

Query: 61  PSSSLFDMVQFQAQNQVPSKGASASSTVNVTKIECSELLNQPATPNSSSISSASSEALND 120
            S+S+FDM+Q      VPS    A+S    TK+E  E+LNQPATPNSSSISSASS+ALND
Sbjct: 54  -SASVFDMLQ------VPSVVQPAASNPVATKMESPEVLNQPATPNSSSISSASSDALND 106

Query: 121 EQVKVEEHVHDEQNQQKTKKQLKPKKTNQKRQREPRFAFMTKSEVDHLEDGYRWRKYGQK 180
           E VKV ++  +E+ QQKT+K+LKPKKTNQKRQREPRFAFMTKSEVDHLEDGYRWRKYGQK
Sbjct: 107 EPVKVADN--EEEEQQKTRKELKPKKTNQKRQREPRFAFMTKSEVDHLEDGYRWRKYGQK 164

Query: 181 AVKDSPFPRSYYRCTSASCNVKKRVERSYTDPSIVVTTYEGQHNHPSPLLPRPTLGGVPH 240
           AVK+SPFPRSYYRCTSASCNVKKRVERS++DPSIVVTTYEGQH HPS ++ RP+  G   
Sbjct: 165 AVKNSPFPRSYYRCTSASCNVKKRVERSFSDPSIVVTTYEGQHTHPSAVMARPSFTGAA- 223

Query: 241 AGNGVVGSSFGMPMP---AAFSQQQLPSLVNSLLPMNFGSSFINGPTTASFLHERRFCTP 297
           + +G   S+F MPM    + F QQQ P  +NS   + FG     G T A+FLHERRFCT 
Sbjct: 224 SESGFSTSAFAMPMQRRLSHFQQQQQP-FLNSFTALGFG---YKGNTNATFLHERRFCT- 278

Query: 298 AAGTDLLKDHGLLQDIVPSHMLREE 322
           + G+DLL+DHGLLQDIVPSHML EE
Sbjct: 279 SPGSDLLEDHGLLQDIVPSHMLNEE 303

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255548389|ref|XP_002515251.1| WRKY transcription factor, putative [Ricinus communis] gi|223545731|gb|EEF47235.1| WRKY transcription factor, putative [Ricinus communis]

 Score =  329 bits (844), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 200/330 (60%), Positives = 232/330 (70%), Gaps = 22/330 (6%)

Query: 1   MERKEVTKTKNNNNMGSSP------FADHLSTGSQLRGVFD-LYEGEKGSLGFMELLGVQ 53
           ME  E  K +N   +GSSP      F D L     L+ VFD  Y G+K SLGF+ELLGVQ
Sbjct: 1   MEGTEAVKIENI--VGSSPPPPTTAFPDLLYGSYPLQSVFDNFYGGDKSSLGFLELLGVQ 58

Query: 54  DFGSSSPPSSSLFDMVQFQAQNQVPSKGASASSTVNVTKIECSELLNQPATPNSSSISSA 113
           DF S S     +FD +Q  +         + S  V VTK+E  E+ NQPATPNSSSISSA
Sbjct: 59  DFTSPS-----VFDTLQLPSTTMQQPPATNNSPAVVVTKMESPEVFNQPATPNSSSISSA 113

Query: 114 SSEALNDEQVKVEEHVHDEQNQQKTKKQLKPKKTNQKRQREPRFAFMTKSEVDHLEDGYR 173
           SSEALNDE   ++   ++E+ QQKTKK+LKPKKTN KRQREPRFAFMTKSEVDHLEDGYR
Sbjct: 114 SSEALNDE-APIKAVDNEEEEQQKTKKELKPKKTNHKRQREPRFAFMTKSEVDHLEDGYR 172

Query: 174 WRKYGQKAVKDSPFPRSYYRCTSASCNVKKRVERSYTDPSIVVTTYEGQHNHPSPLLPRP 233
           WRKYGQKAVK+SPFPRSYYRCT+ASCNVKKRVERS++DPSIVVTTYEGQH HPSP++PRP
Sbjct: 173 WRKYGQKAVKNSPFPRSYYRCTTASCNVKKRVERSFSDPSIVVTTYEGQHTHPSPVMPRP 232

Query: 234 TLGGVPHAGNGVVGSSFGMPMPAAFSQQQLPS--LVNSLLPMNFGSSFINGPTTASFLHE 291
           +  G   + +G   ++F MPM    S  Q P     NS  P+ FG    N  T AS LHE
Sbjct: 233 SFVGA-ASESGFSATNFAMPMQRRLSLYQQPQQPFFNSFSPLGFG---YNSTTNASLLHE 288

Query: 292 RRFCTPAAGTDLLKDHGLLQDIVPSHMLRE 321
           +RFCT A G  LL+DHGLLQDIVPSHML+E
Sbjct: 289 KRFCT-APGAALLEDHGLLQDIVPSHMLKE 317

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|259121391|gb|ACV92015.1| WRKY transcription factor 13 [(Populus tomentosa x P. bolleana) x P. tomentosa]

 Score =  296 bits (757), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 194/334 (58%), Positives = 228/334 (68%), Gaps = 29/334 (8%)

Query: 1   MERKEVTKTKNNNNMGSSPFA---DHLSTGSQLRGVFDLYEGEKGSLGFMELLGVQDFGS 57
           MERKE  K +N   +GS  F+   DH+ T       FD  + +K SLGFMELLGVQDF  
Sbjct: 1   MERKEAVKVENF--VGSPTFSSTTDHVQTSYPFMQGFDFVD-DKSSLGFMELLGVQDF-- 55

Query: 58  SSPPSSSLFDMVQFQAQNQVPSKGASASSTVNVTKIECSELLNQPATPNSSSISSASSEA 117
               S SL DM+Q Q    +PS    ++           E+LNQPATPNSSSISSASSE 
Sbjct: 56  ----SPSLLDMIQVQ----IPSVQTPSAQVATEVVDSPPEVLNQPATPNSSSISSASSEG 107

Query: 118 LNDEQVKVEEHVHDEQNQQ-KTKKQLKPKKTNQKRQREPRFAFMTKSEVDHLEDGYRWRK 176
           LNDE     + V +E  +Q KTKK+LKPKKTNQKRQREPRFAFMTKSEVDHLEDGYRWRK
Sbjct: 108 LNDE--PANKGVDNEVEEQGKTKKELKPKKTNQKRQREPRFAFMTKSEVDHLEDGYRWRK 165

Query: 177 YGQKAVKDSPFPRSYYRCTSASCNVKKRVERSYTDPSIVVTTYEGQHNHPSPLLPRPTLG 236
           YGQKAVK+SPFPRSYYRCT+ASCNVKKRVERS++DPS+VVTT+EGQH HPSP++PRP   
Sbjct: 166 YGQKAVKNSPFPRSYYRCTTASCNVKKRVERSFSDPSVVVTTHEGQHTHPSPVMPRPNFS 225

Query: 237 GVPHAGNGVVGSSFGMPMPAAFS-------QQQLPSLVNSLLPMNFGSSFINGPTTASFL 289
           G          ++F MPM    S       QQQ P  + SL P+ FG +  N    AS+L
Sbjct: 226 GSASDSGFSSAAAFAMPMQRRLSLYQQHQSQQQPPFPLVSLSPLGFGYN-GNATNAASYL 284

Query: 290 -HERRFCTPAAGTDLLKDHGLLQDIVPSHMLREE 322
            HE+RF T + G+ LLKDHGLLQD+VPSHML+EE
Sbjct: 285 QHEKRFYT-SPGSALLKDHGLLQDLVPSHMLKEE 317

Source: (Populus tomentosa x P. bolleana) x P. tomentosa

Species: (Populus tomentosa x P. bolleana) x P. tomentosa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|117582134|gb|ABK41486.1| WRKY transcription factor [Populus tremula x Populus alba]

 Score =  295 bits (756), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 196/336 (58%), Positives = 230/336 (68%), Gaps = 33/336 (9%)

Query: 1   MERKEVTKTKNNNNMGSSPFA---DHLSTGSQLRGVFDLYEGEKGSLGFMELLGVQDFGS 57
           MERKE  K +N   +GS  F+   DH+ T       FD  + +K SLGFMELLGVQDF  
Sbjct: 1   MERKEAVKVENF--VGSPTFSSTTDHVQTSYPFMQGFDFVD-DKSSLGFMELLGVQDF-- 55

Query: 58  SSPPSSSLFDMVQFQAQNQVPSKGASASSTVNVTKIECSELLNQPATPNSSSISSASSEA 117
               S SL DM+Q Q    +PS    ++           E+LNQPATPNSSSISSASSE 
Sbjct: 56  ----SPSLLDMIQVQ----IPSVQTPSAQVATEVVDSPPEVLNQPATPNSSSISSASSEG 107

Query: 118 LNDEQVKVEEHVHDEQNQQ-KTKKQLKPKKTNQKRQREPRFAFMTKSEVDHLEDGYRWRK 176
           LNDE     + V +E  +Q KTKK+LKPKKTNQKRQREPRFAFMTKSEVDHLEDGYRWRK
Sbjct: 108 LNDE--PANKGVDNEVEEQGKTKKELKPKKTNQKRQREPRFAFMTKSEVDHLEDGYRWRK 165

Query: 177 YGQKAVKDSPFPRSYYRCTSASCNVKKRVERSYTDPSIVVTTYEGQHNHPSPLLPRPTLG 236
           YGQKAVK+SPFPRSYYRCT+ASCNVKKRVERS++DPS+VVTTYEGQH HPSP++PRP   
Sbjct: 166 YGQKAVKNSPFPRSYYRCTTASCNVKKRVERSFSDPSVVVTTYEGQHTHPSPVMPRPNFS 225

Query: 237 GVPHAGNGVVGSSFGMPMPAAFS-------QQQLPSLVNSLLPMNFGSSFINGPTT--AS 287
           G          ++F MPM    S       QQQ P  + SL P+ FG    NG +T  AS
Sbjct: 226 GSTSDSGFSSTAAFAMPMQRRLSLYQQHQSQQQPPFPLVSLSPLGFG---YNGNSTNAAS 282

Query: 288 FL-HERRFCTPAAGTDLLKDHGLLQDIVPSHMLREE 322
           +L +E+RF T + G+ LLKDHGLLQD+VPSHML+EE
Sbjct: 283 YLQYEKRFYT-SPGSALLKDHGLLQDLVPSHMLKEE 317

Source: Populus tremula x Populus alba

Species: Populus tremula x Populus alba

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224064606|ref|XP_002301524.1| predicted protein [Populus trichocarpa] gi|222843250|gb|EEE80797.1| predicted protein [Populus trichocarpa]

 Score =  288 bits (738), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 193/336 (57%), Positives = 224/336 (66%), Gaps = 49/336 (14%)

Query: 1   MERKEVTKTKNNNNMGSSPFA---DHLSTGSQLRGVFDLYEGEKGSLGFMELLGVQDFGS 57
           MERKE  K +N   +GS  F+   DH+ T       FD  + +K SLGFMELLGVQDF  
Sbjct: 1   MERKEAVKVENF--VGSPTFSSTTDHVQTSYPFMQGFDFVD-DKSSLGFMELLGVQDF-- 55

Query: 58  SSPPSSSLFDMVQFQAQNQVPSKGASASSTVNVTKIECSELLNQPATPNSSSISSASSEA 117
               S SL DM+Q Q                    I   E+LNQPATPNSSSISSASSE 
Sbjct: 56  ----SPSLLDMMQVQ--------------------IPPPEVLNQPATPNSSSISSASSEG 91

Query: 118 LNDEQVKVEEHVHDEQNQQ-KTKKQLKPKKTNQKRQREPRFAFMTKSEVDHLEDGYRWRK 176
           LNDE     + V +E  +Q KTKK+LKPKKTNQKRQREPRFAFMTKSEVDHLEDGYRWRK
Sbjct: 92  LNDE--PANKGVDNEVEEQGKTKKELKPKKTNQKRQREPRFAFMTKSEVDHLEDGYRWRK 149

Query: 177 YGQKAVKDSPFPRSYYRCTSASCNVKKRVERSYTDPSIVVTTYEGQHNHPSPLLPRPTLG 236
           YGQKAVK+SPFPRSYYRCT+ASCNVKKRVERS++DPS+VVTTYEGQH HPSP++PRP   
Sbjct: 150 YGQKAVKNSPFPRSYYRCTTASCNVKKRVERSFSDPSVVVTTYEGQHTHPSPVMPRPNFT 209

Query: 237 GVPHAGNGVVGSSFGMPMPAAFSQQQL-------PSLVNSLLPMNFGSSFINGPTT--AS 287
           G          ++F MPM    S  Q        P  + SL P+ FG    NG TT  A+
Sbjct: 210 GSTSDSGFSSTAAFAMPMQRRLSLYQQHQSQQQPPFPLVSLSPLGFG---YNGSTTNAAN 266

Query: 288 FL-HERRFCTPAAGTDLLKDHGLLQDIVPSHMLREE 322
           +L +E+RF T + G+ LLKDHGLLQD+VPSHML+EE
Sbjct: 267 YLQYEKRFYT-SPGSALLKDHGLLQDLVPSHMLKEE 301

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|259121431|gb|ACV92035.1| WRKY transcription factor 33 [(Populus tomentosa x P. bolleana) x P. tomentosa]

 Score =  283 bits (725), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 182/291 (62%), Positives = 208/291 (71%), Gaps = 27/291 (9%)

Query: 43  SLGFMELLGVQDFGSSSPPSSSLFDMVQFQAQNQVPSKGASASSTVNVTKIECSELLNQP 102
           +LGFMELLGVQDF      S SL DM+Q Q    +PS    ++           E+LNQP
Sbjct: 2   ALGFMELLGVQDF------SPSLLDMIQVQ----IPSVQTPSAQVATEVVDSPPEVLNQP 51

Query: 103 ATPNSSSISSASSEALNDEQVKVEEHVHDEQNQQ-KTKKQLKPKKTNQKRQREPRFAFMT 161
           ATPNSSSISSASSE LNDE     E V +E  +Q KTKK+LKPKKTNQKRQREPRFAFMT
Sbjct: 52  ATPNSSSISSASSEGLNDE--PANEGVDNEVEEQGKTKKELKPKKTNQKRQREPRFAFMT 109

Query: 162 KSEVDHLEDGYRWRKYGQKAVKDSPFPRSYYRCTSASCNVKKRVERSYTDPSIVVTTYEG 221
           KSEVDHLEDGYRWRKYGQKAVK+SPFPRSYYRCT+ASCNVKKRVERS++DPS+VVTTYEG
Sbjct: 110 KSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTTASCNVKKRVERSFSDPSVVVTTYEG 169

Query: 222 QHNHPSPLLPRPTLGGVPHAGNGVVGSSFGMPMPAAFS-------QQQLPSLVNSLLPMN 274
           QH HPSP++PRP   G          ++F MPM    S       QQQ P  + SL P+ 
Sbjct: 170 QHTHPSPVMPRPNFSGSASDSGFSSTAAFAMPMQRRLSLYQQHQSQQQPPFPLVSLSPLG 229

Query: 275 FGSSFINGPTT--ASFL-HERRFCTPAAGTDLLKDHGLLQDIVPSHMLREE 322
           FG    NG TT  AS+L HE+RF T + G+ LLKDHGLLQD+VPSHML+EE
Sbjct: 230 FG---YNGNTTNAASYLQHEKRFYT-SPGSALLKDHGLLQDLVPSHMLKEE 276

Source: (Populus tomentosa x P. bolleana) x P. tomentosa

Species: (Populus tomentosa x P. bolleana) x P. tomentosa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255640394|gb|ACU20484.1| unknown [Glycine max]

 Score =  282 bits (721), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 182/332 (54%), Positives = 218/332 (65%), Gaps = 20/332 (6%)

Query: 1   MERKEVTKTKNNNNMGSSPF-ADHLSTGSQLRGVFDLYEGEKGSLGFMELLGVQDFGSSS 59
           ME+KE+   K  + +GSS F   + S        FD  E EK SLGFMELLGVQD+    
Sbjct: 1   MEKKEMA-VKTEDAVGSSSFPCYNYSNLYPFSNAFDFSEVEKSSLGFMELLGVQDY---- 55

Query: 60  PPSSSLFDMVQFQAQNQVPSKGASASSTVNVTKIECSELLN-QPATPNSSSISSASSEAL 118
              S L ++ Q    + V S   S  +  +    ECSE+LN QPATPNSSSISSAS++A+
Sbjct: 56  ---SPLLELPQLSTVS-VQSHHHSTVTVPSDNGKECSEVLNHQPATPNSSSISSASTDAV 111

Query: 119 NDEQVKVEEHVHDEQ----NQQKTKKQLKPKKTNQKRQREPRFAFMTKSEVDHLEDGYRW 174
           NDEQ K  +   ++      Q KTKKQLKPKKTNQKRQREPRFAFMTKSEVDHLEDGYRW
Sbjct: 112 NDEQKKTLDQAEEDDDDDEGQHKTKKQLKPKKTNQKRQREPRFAFMTKSEVDHLEDGYRW 171

Query: 175 RKYGQKAVKDSPFPRSYYRCTSASCNVKKRVERSYTDPSIVVTTYEGQHNHPSPLLPRPT 234
           RKYGQKAVK+SPFPRSYYRCTS SCNVKKRVERS+TDPS+VVTTYEGQH HPSP++PR  
Sbjct: 172 RKYGQKAVKNSPFPRSYYRCTSVSCNVKKRVERSFTDPSVVVTTYEGQHTHPSPVMPRSV 231

Query: 235 LGGVPHAGNGV----VGSSFGMPMPAAFSQQQLPSLVNSLLPMNFGSSFINGPTTASFLH 290
           +    +A N      +G+            QQ   LVN+L  + F  +  + P  A F+ 
Sbjct: 232 VSS-GYANNFASVLPLGNYLSQYQQQHHHHQQQKLLVNTLSSLGFPYNDSSSPKNAVFIQ 290

Query: 291 ERRFCTPAAGTDLLKDHGLLQDIVPSHMLREE 322
           ERR C+       L+DHGLLQD+VPSHML+EE
Sbjct: 291 ERRLCSNQGTNAFLRDHGLLQDVVPSHMLKEE 322

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357442207|ref|XP_003591381.1| WRKY transcription factor [Medicago truncatula] gi|355480429|gb|AES61632.1| WRKY transcription factor [Medicago truncatula]

 Score =  281 bits (719), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 181/322 (56%), Positives = 206/322 (63%), Gaps = 42/322 (13%)

Query: 24  LSTGSQLRGVFDLYEGEKGS-LGFMELLGVQDFGSSSPPSSSLFDMVQFQAQNQVPSKGA 82
           L+ G Q   VFD  E E+ S LGFMELLG  D+       S L D+ Q    + V     
Sbjct: 23  LNNGYQFSSVFDFCEVERSSSLGFMELLGGHDY-------SPLLDVPQLSTMSTV----- 70

Query: 83  SASSTVNVTKIECSELLNQ--PATPNSSSISSASSEALNDEQVKVEE-HVHDEQNQQKTK 139
            ASS  + T  ECSE+LNQ  PATPNS SISSASSEA+ND +  V++    +E+ +QKT 
Sbjct: 71  KASS--DTTGKECSEVLNQQQPATPNSCSISSASSEAVNDNKTLVDQAEEDEEEEKQKTN 128

Query: 140 KQLKPKKTNQKRQREPRFAFMTKSEVDHLEDGYRWRKYGQKAVKDSPFPRSYYRCTSASC 199
           KQLK KKTN KRQREPRFAFMTKSEVDHLEDGYRWRKYGQKAVK+SPFPRSYYRCT+ASC
Sbjct: 129 KQLKTKKTNLKRQREPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTTASC 188

Query: 200 NVKKRVERSYTDPSIVVTTYEGQHNHPSPLLPRPTLGGV--PHAGNGVVGSSFGMPMPAA 257
           NVKKRVERSYTDPSIVVTTYEGQH HPSP + R    GV  P    GVV   F      +
Sbjct: 189 NVKKRVERSYTDPSIVVTTYEGQHTHPSPTMSRSAFAGVQIPQPA-GVVSGGFSTTNFGS 247

Query: 258 FSQQQLPS------------LVNSLL----PMNFGSSFINGPTTASFLHER-RFCTPAAG 300
             Q    S            LVN+L     P N  SSF N P T     ER + C P   
Sbjct: 248 VLQGNYLSQYHQQPYQHQQLLVNTLSSLSHPYNNSSSFKNSPFTT---QERVQLCNPGT- 303

Query: 301 TDLLKDHGLLQDIVPSHMLREE 322
           T  L+D+GLLQD+VPSHML+E+
Sbjct: 304 TAFLRDNGLLQDVVPSHMLKEK 325

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351728066|ref|NP_001237438.1| WRKY54 [Glycine max] gi|83630943|gb|ABC26920.1| WRKY54 [Glycine max]

 Score =  280 bits (716), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 172/333 (51%), Positives = 211/333 (63%), Gaps = 21/333 (6%)

Query: 1   MERKEVTKTKNNNNMGSSPF-ADHLSTGSQLRGVFDLYEGEKGSLGFMELLGVQDFGSSS 59
           ME+KE+   K  + +GSS F   + S        FD  E EK SLGFMELLGVQD+    
Sbjct: 1   MEKKEMA-VKTEDAVGSSSFPCYNYSNLYPFSNAFDFSEVEKSSLGFMELLGVQDY---- 55

Query: 60  PPSSSLFDMVQFQAQNQVPSKGASASSTVNVTKIECSELLN-QPATPNSSSISSASSEAL 118
              S L ++ Q    + V S   S  +  +    ECSE+LN QPATPNSSSISSAS++A+
Sbjct: 56  ---SPLLELPQLSTVS-VQSHHHSTVTVPSDNGKECSEVLNHQPATPNSSSISSASTDAV 111

Query: 119 NDEQVKVEEHVHDEQNQQKTKKQLKPKK-----TNQKRQREPRFAFMTKSEVDHLEDGYR 173
           NDEQ K  +   ++ +     +    K+     TNQKRQREPRFAFMTKSEVDHLEDGYR
Sbjct: 112 NDEQKKTLDQAEEDDDDDDEGRHKTKKQLKPKKTNQKRQREPRFAFMTKSEVDHLEDGYR 171

Query: 174 WRKYGQKAVKDSPFPRSYYRCTSASCNVKKRVERSYTDPSIVVTTYEGQHNHPSPLLPRP 233
           WRKYGQKAVK+SPFPRSYYRCTS SCNVKKRVERS+TDPS+VVTTYEGQH HPSP++PR 
Sbjct: 172 WRKYGQKAVKNSPFPRSYYRCTSVSCNVKKRVERSFTDPSVVVTTYEGQHTHPSPVMPRS 231

Query: 234 TLGGVPHAGNGV----VGSSFGMPMPAAFSQQQLPSLVNSLLPMNFGSSFINGPTTASFL 289
            +    +A N      +G+            QQ   LVN+L  + F  +  + P  A F+
Sbjct: 232 VVSS-GYANNFASVLPLGNYLSQYQQQHHHHQQQKLLVNTLSSLGFPYNDSSSPKNAVFI 290

Query: 290 HERRFCTPAAGTDLLKDHGLLQDIVPSHMLREE 322
            ERR C+       L+DHGLLQD+VPSHML+EE
Sbjct: 291 QERRLCSNQGTNAFLRDHGLLQDVVPSHMLKEE 323

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225432004|ref|XP_002279385.1| PREDICTED: probable WRKY transcription factor 48 [Vitis vinifera] gi|296083226|emb|CBI22862.3| unnamed protein product [Vitis vinifera]

 Score =  276 bits (706), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 178/328 (54%), Positives = 220/328 (67%), Gaps = 30/328 (9%)

Query: 1   MERKEVTKTKNNNNMGSSPFADHLSTGSQLRG-VFDL-YEGEKGSLGFMELLGVQDFGSS 58
           ME KE  KT+N+  M +S F+D +         +FD+  E EKGSLGFM+LLG+QD+   
Sbjct: 1   MEEKEQVKTENS--MANSTFSDQIPASCAFSSSIFDMPCEVEKGSLGFMDLLGIQDY--- 55

Query: 59  SPPSSSLFDMVQFQAQNQVPSKGASASSTVNVTKIECSELLNQPATPNSSSISSASSEAL 118
              S SLFD++Q       P      +S  +    E SE++N PATPNSSSISS+S+EA 
Sbjct: 56  ---SPSLFDLLQ------PPLAPHPLTSPASSAPPESSEVVNAPATPNSSSISSSSTEAA 106

Query: 119 NDEQVKVEEHVHDEQNQQKTKKQLKPKKTNQKRQREPRFAFMTKSEVDHLEDGYRWRKYG 178
           ND+Q K  E    EQ+Q+K K+QLKPKK NQKRQREPRFAF+TKSEVDHL+DGYRWRKYG
Sbjct: 107 NDDQTKAAEEE--EQDQEKNKQQLKPKKKNQKRQREPRFAFITKSEVDHLDDGYRWRKYG 164

Query: 179 QKAVKDSPFPRSYYRCTSASCNVKKRVERSYTDPSIVVTTYEGQHNHPSPLLPRPTLGGV 238
           QKAVK+SPFPRSYYRCT+A+C VKKRVERS  DP+ VVTTYEGQH HP P++PR +LG  
Sbjct: 165 QKAVKNSPFPRSYYRCTTAACGVKKRVERSSDDPTTVVTTYEGQHTHPCPVMPRGSLGIP 224

Query: 239 PHAGNGVVGSSFGMPMPAAFSQQQLPSLV-NSLLPMNF---GSSFINGPTTASFLHERRF 294
           P A      ++    MP    QQQ      NS L +NF    SS IN     +FLHERR 
Sbjct: 225 PEAVTFSAAAASSFAMPQPQYQQQQQPYFNNSSLSLNFNHMNSSSIN----PTFLHERRL 280

Query: 295 -CTPAAGTDLLKDHGLLQDIVPSHMLRE 321
             +PA+   LL+DHGLL+D++PS M +E
Sbjct: 281 RPSPAS---LLRDHGLLEDLLPSQMFKE 305

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	322
TAIR|locus:2065124	337	WRKY23 "WRKY DNA-binding prote	0.888	0.848	0.452	3e-53
TAIR|locus:2157829	399	WRKY48 "WRKY DNA-binding prote	0.835	0.674	0.389	6.4e-44
TAIR|locus:2096019	277	WRKY68 [Arabidopsis thaliana (	0.673	0.783	0.422	7.6e-44
TAIR|locus:2019382	282	WRKY71 "WRKY DNA-binding prote	0.496	0.567	0.517	7e-38
TAIR|locus:2141872	318	WRKY28 "WRKY DNA-binding prote	0.242	0.245	0.820	1.1e-34
TAIR|locus:2007081	287	WRKY57 "AT1G69310" [Arabidopsi	0.475	0.533	0.514	2.2e-34
TAIR|locus:2170403	326	WRKY8 "WRKY DNA-binding protei	0.242	0.239	0.782	2e-33
TAIR|locus:2014799	514	WRKY4 "WRKY DNA-binding protei	0.459	0.287	0.444	8.3e-26
TAIR|locus:2078703	147	WRKY45 "WRKY DNA-binding prote	0.232	0.510	0.64	2.2e-25
TAIR|locus:505006317	218	WRKY12 "WRKY DNA-binding prote	0.232	0.344	0.697	4.6e-25

TAIR|locus:2065124 WRKY23 "WRKY DNA-binding protein 23" [Arabidopsis thaliana (taxid:3702)]

 Score = 551 (199.0 bits), Expect = 3.0e-53, P = 3.0e-53
 Identities = 143/316 (45%), Positives = 169/316 (53%)

Query:    35 DLYEGEKGSLGFMELLGVQ---DFGXXXXXXXXLFDMVQFQAQNQVPSKGASA------S 85
             DL   E+ SLGFMELL  Q   DF         L    Q Q Q Q  +K +S+      S
Sbjct:    24 DLAAAERHSLGFMELLSSQQHQDFATVSPHSF-LLQTSQPQTQTQPSAKLSSSIIQAPPS 82

Query:    86 STVNVTKIE--CSE--LLNQPATPNXXXXXXXXXEALNDEQVKVEEHVH----DEXXXXX 137
               +  +K+E  CS+  L+N PATPN         EALN+E+ K E++      D+     
Sbjct:    83 EQLVTSKVESLCSDHLLINPPATPNSSSISSASSEALNEEKPKTEDNEEEGGEDQQEKSH 142

Query:   138 XXXXXXXXXXXXXRQREPRFAFMTKSEVDHLEDGYRWRKYGQKAVKDSPFPRSYYRCTSA 197
                          RQRE R AFMTKSEVDHLEDGYRWRKYGQKAVK+SPFPRSYYRCT+A
Sbjct:   143 TKKQLKAKKNNQKRQREARVAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTTA 202

Query:   198 SCNVKKRVERSYTDPSIVVTTYEGQHNHPSPLLPRPTLGGVPHAGNGVVGS----SFGMP 253
             SCNVKKRVERS+ DPS VVTTYEGQH H SPL  RP   G     +G   S     FG P
Sbjct:   203 SCNVKKRVERSFRDPSTVVTTYEGQHTHISPLTSRPISTGGFFGSSGAASSLGNGCFGFP 262

Query:   254 MPAA--FSQQ--QLPSLVNSLLPMNFGSSFINGPTTASFLHERRFCTP---AAGTDLLKD 306
             +  +   S Q  QL    +        S F  G       H   +           L+KD
Sbjct:   263 IDGSTLISPQFQQLVQYHHQQQQQELMSCF-GGVNEYLNSHANEYGDDNRVKKSRVLVKD 321

Query:   307 HGLLQDIVPSHMLREE 322
             +GLLQD+VPSHML+EE
Sbjct:   322 NGLLQDVVPSHMLKEE 337

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009624 "response to nematode" evidence=IEP

GO:0009733 "response to auxin stimulus" evidence=IEP

TAIR|locus:2157829 WRKY48 "WRKY DNA-binding protein 48" [Arabidopsis thaliana (taxid:3702)]

 Score = 463 (168.0 bits), Expect = 6.4e-44, P = 6.4e-44
 Identities = 115/295 (38%), Positives = 157/295 (53%)

Query:    46 FMELLGVQDFGXXXXXXXXLFDMVQFQAQNQVPSKGASASSTVNVTKIECSELLNQ-PAT 104
             F++LL  QD           F    F   N   +   S  + + + + E SE++N  P +
Sbjct:    94 FLDLLR-QDHQFASSSNSSSFSFDAFPLPNN--NNNTSFFTDLPLPQAESSEVVNTTPTS 150

Query:   105 PNXXXXXXXXXEALNDEQ------VKVEEHVHDEXXXXXXXXXXXXXXXXXXRQREPRFA 158
             PN         EA ND        VK +E    +                  + RE RFA
Sbjct:   151 PNSTSVSSSSNEAANDNNSGKEVTVKDQEEGDQQQEQKGTKPQLKAKKKNQKKAREARFA 210

Query:   159 FMTKSEVDHLEDGYRWRKYGQKAVKDSPFPRSYYRCTSASCNVKKRVERSYTDPSIVVTT 218
             F+TKS++D+L+DGYRWRKYGQKAVK+SP+PRSYYRCT+  C VKKRVERS  DPSIV+TT
Sbjct:   211 FLTKSDIDNLDDGYRWRKYGQKAVKNSPYPRSYYRCTTVGCGVKKRVERSSDDPSIVMTT 270

Query:   219 YEGQHNHPSPLLPRPTLGGV--P---HAGNGVVGSSFGMPMPA-AFSQQQLPSLV---NS 269
             YEGQH HP P+ PR  +G +  P   H       SSF +P P    +Q   P  +   NS
Sbjct:   271 YEGQHTHPFPMTPRGHIGMLTSPILDHGATTASSSSFSIPQPRYLLTQHHQPYNMYNNNS 330

Query:   270 LLPMNFGSS---FIN-GPTTA--SFLHERRFCTPAAGTDLLKDHGLLQDIVPSHM 318
             L  +N  SS   F+N GP+++   F ++    + +  + + +DHGLLQDI+PS +
Sbjct:   331 LSMINRRSSDGTFVNPGPSSSFPGFGYDMSQASTSTSSSI-RDHGLLQDILPSQI 384

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0003677 "DNA binding" evidence=IDA

GO:0009617 "response to bacterium" evidence=IEP

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0006865 "amino acid transport" evidence=RCA

GO:0015824 "proline transport" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0052542 "defense response by callose deposition" evidence=RCA

TAIR|locus:2096019 WRKY68 [Arabidopsis thaliana (taxid:3702)]

 Score = 435 (158.2 bits), Expect = 7.6e-44, Sum P(2) = 7.6e-44
 Identities = 98/232 (42%), Positives = 134/232 (57%)

Query:    98 LLNQPATPNXXXXXXXXXEALNDEQVKVEEHVHDEXXXXXXXXXXXXXXXXXXRQREPRF 157
             L++ P TPN         EA+N +  + EE   ++                  +++ P+ 
Sbjct:    53 LMHFPTTPNSSSS-----EAVNGDDEE-EEDGEEQQHKTKKRFKFTKMSRKQTKKKVPKV 106

Query:   158 AFMTKSEVDHLEDGYRWRKYGQKAVKDSPFPRSYYRCTSASCNVKKRVERSYTDPSIVVT 217
             +F+T+SEV HL+DGY+WRKYGQK VKDSPFPR+YYRCT+  C+VKKRVERS++DPS V+T
Sbjct:   107 SFITRSEVLHLDDGYKWRKYGQKPVKDSPFPRNYYRCTTTWCDVKKRVERSFSDPSSVIT 166

Query:   218 TYEGQHNHPSPLLPRPTLGGVPHAGNGVVGSSFGMP-MPAAF-----SQQQLPSLVNSLL 271
             TYEGQH HP PLL  P  G  P  G+    +  G+P +P         QQQ PS   +  
Sbjct:   167 TYEGQHTHPRPLLIMPKEGSSPSNGSAS-RAHIGLPTLPPQLLDYNNQQQQAPSSFGTEY 225

Query:   272 PMNFGSSFINGPTTASFLHER-RFCTPAAGTDLLKDHGLLQDIVPSHMLREE 322
              +N     IN       + ++ R      G  L+KDHGLLQD+VPSH+++EE
Sbjct:   226 -INRQEKGINHDDDDDHVVKKSRTRDLLDGAGLVKDHGLLQDVVPSHIIKEE 276

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:2019382 WRKY71 "WRKY DNA-binding protein 71" [Arabidopsis thaliana (taxid:3702)]

 Score = 406 (148.0 bits), Expect = 7.0e-38, P = 7.0e-38
 Identities = 91/176 (51%), Positives = 113/176 (64%)

Query:   151 RQREPRFAFMTKSEVDHLEDGYRWRKYGQKAVKDSPFPRSYYRCTSASCNVKKRVERSYT 210
             ++RE R AFMTKSE+DHLEDGYRWRKYGQKAVK+SP+PRSYYRCT+  CNVKKRVERS+ 
Sbjct:   118 KEREVRVAFMTKSEIDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCNVKKRVERSFQ 177

Query:   211 DPSIVVTTYEGQHNHPSPLLPRPTLGGVPHAGNGVVGSSFGMPMPAAFSQQQLPSLVNSL 270
             DPSIV+TTYEG+HNHP P     TL G   A + +V    G  +  +F +     L+   
Sbjct:   178 DPSIVITTYEGKHNHPIP----STLRGTVAAEHLLVHRGGGGSLLHSFPRHHQDFLMMKH 233

Query:   271 LPMNF---GS-SFINGPTTASFLHERRFCTPAAGTDLLKDHGLLQDIVPSHMLREE 322
              P N+   GS S+ +G  T+S+        P        D+GLLQDIVPS   + E
Sbjct:   234 SPANYQSVGSLSYEHGHGTSSYNFNNN--QPVV------DYGLLQDIVPSMFSKNE 281

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:2141872 WRKY28 "WRKY DNA-binding protein 28" [Arabidopsis thaliana (taxid:3702)]

 Score = 376 (137.4 bits), Expect = 1.1e-34, P = 1.1e-34
 Identities = 64/78 (82%), Positives = 73/78 (93%)

Query:   151 RQREPRFAFMTKSEVDHLEDGYRWRKYGQKAVKDSPFPRSYYRCTSASCNVKKRVERSYT 210
             +QREPR +FMTKSEVDHLEDGYRWRKYGQKAVK+SP+PRSYYRCT+  CNVKKRVERS+ 
Sbjct:   154 KQREPRVSFMTKSEVDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCNVKKRVERSFQ 213

Query:   211 DPSIVVTTYEGQHNHPSP 228
             DP++V+TTYEGQHNHP P
Sbjct:   214 DPTVVITTYEGQHNHPIP 231

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IDA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA;IDA

GO:0006865 "amino acid transport" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

TAIR|locus:2007081 WRKY57 "AT1G69310" [Arabidopsis thaliana (taxid:3702)]

 Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
 Identities = 88/171 (51%), Positives = 105/171 (61%)

Query:   151 RQREPRFAFMTKSEVDHLEDGYRWRKYGQKAVKDSPFPRSYYRCTSASCNVKKRVERSYT 210
             R R+PRFAFMTKS+VD+LEDGYRWRKYGQKAVK+SPFPRSYYRCT++ C VKKRVERS  
Sbjct:   129 RIRQPRFAFMTKSDVDNLEDGYRWRKYGQKAVKNSPFPRSYYRCTNSRCTVKKRVERSSD 188

Query:   211 DPSIVVTTYEGQHNHPSPLLPRPTLGGV--PHAGNGVVGSS-FGMPMPAAFSQQQLPSLV 267
             DPSIV+TTYEGQH H +   PR   GG+   H  +          P+P  +  Q+L   +
Sbjct:   189 DPSIVITTYEGQHCHQTIGFPR---GGILTAHDPHSFTSHHHLPPPLPNPYYYQELLHQL 245

Query:   268 NSLLPMNFGSSFINGPTTASFLHERRFCTPAAGTDLLKDHGLLQDIVPSHM 318
             +     N  S  +  PTT          TPA  T    + GLL DIVP  M
Sbjct:   246 HR--DNNAPSPRLPRPTTED--------TPAVSTP--SEEGLLGDIVPQTM 284

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0006970 "response to osmotic stress" evidence=IMP

GO:0009414 "response to water deprivation" evidence=IMP

GO:0009651 "response to salt stress" evidence=IMP

TAIR|locus:2170403 WRKY8 "WRKY DNA-binding protein 8" [Arabidopsis thaliana (taxid:3702)]

 Score = 364 (133.2 bits), Expect = 2.0e-33, P = 2.0e-33
 Identities = 61/78 (78%), Positives = 72/78 (92%)

Query:   151 RQREPRFAFMTKSEVDHLEDGYRWRKYGQKAVKDSPFPRSYYRCTSASCNVKKRVERSYT 210
             +++EPR +FMTK+EVDHLEDGYRWRKYGQKAVK+SP+PRSYYRCT+  CNVKKRVERSY 
Sbjct:   165 KKKEPRVSFMTKTEVDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCNVKKRVERSYQ 224

Query:   211 DPSIVVTTYEGQHNHPSP 228
             DP++V+TTYE QHNHP P
Sbjct:   225 DPTVVITTYESQHNHPIP 242

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0050832 "defense response to fungus" evidence=IMP

GO:0070301 "cellular response to hydrogen peroxide" evidence=IEP

TAIR|locus:2014799 WRKY4 "WRKY DNA-binding protein 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 297 (109.6 bits), Expect = 8.3e-26, P = 8.3e-26
 Identities = 68/153 (44%), Positives = 81/153 (52%)

Query:    81 GASASST--VNVTKIECSELLNQPATPNXXXXXXXXXEALNDE-QVKV-EEHVHDEXXXX 136
             GAS   T   N TK E  E ++Q  T           E  N E  V+  +E+  D     
Sbjct:   316 GASQFQTNSSNKTKREQHEAVSQATTTEHLSEASDGEEVGNGETDVREKDENEPDPKRRS 375

Query:   137 XXXXXXXXXXXXXXRQ-REPRFAFMTKSEVDHLEDGYRWRKYGQKAVKDSPFPRSYYRCT 195
                           R   EPR    T SEVD L+DGYRWRKYGQK VK +P+PRSYY+CT
Sbjct:   376 TEVRISEPAPAASHRTVTEPRIIVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCT 435

Query:   196 SASCNVKKRVERSYTDPSIVVTTYEGQHNHPSP 228
             +  C V+K VER+ TDP  VVTTYEG+HNH  P
Sbjct:   436 TPGCGVRKHVERAATDPKAVVTTYEGKHNHDLP 468

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0003677 "DNA binding" evidence=ISS

TAIR|locus:2078703 WRKY45 "WRKY DNA-binding protein 45" [Arabidopsis thaliana (taxid:3702)]

 Score = 288 (106.4 bits), Expect = 2.2e-25, P = 2.2e-25
 Identities = 48/75 (64%), Positives = 62/75 (82%)

Query:   151 RQREPRFAFMTKSEVDHLEDGYRWRKYGQKAVKDSPFPRSYYRCTSASCNVKKRVERSYT 210
             ++RE R+AF T+S+VD L+DGYRWRKYGQKAVK++PFPRSYY+CT   C VKK+V+R + 
Sbjct:    47 KEREARYAFQTRSQVDILDDGYRWRKYGQKAVKNNPFPRSYYKCTEEGCRVKKQVQRQWG 106

Query:   211 DPSIVVTTYEGQHNH 225
             D  +VVTTY+G H H
Sbjct:   107 DEGVVVTTYQGVHTH 121

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:505006317 WRKY12 "WRKY DNA-binding protein 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 285 (105.4 bits), Expect = 4.6e-25, P = 4.6e-25
 Identities = 53/76 (69%), Positives = 61/76 (80%)

Query:   153 REPRFAFMTKSEVDHLEDGYRWRKYGQKAVKDSPFPRSYYRCTSASCNVKKRVERSYTDP 212
             REPRF F TKS+VD L+DGY+WRKYGQK VK+S  PRSYYRCT  +C VKKRVER   D 
Sbjct:   129 REPRFCFQTKSDVDVLDDGYKWRKYGQKVVKNSLHPRSYYRCTHNNCRVKKRVERLSEDC 188

Query:   213 SIVVTTYEGQHNH-PS 227
              +V+TTYEG+HNH PS
Sbjct:   189 RMVITTYEGRHNHIPS 204

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009718 "anthocyanin-containing compound biosynthetic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O22900	WRK23_ARATH	No assigned EC number	0.4952	0.8850	0.8456	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pm.C_LG_II0899 hypothetical protein (301 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	322
pfam03106	60	pfam03106, WRKY, WRKY DNA -binding domain	3e-39
smart00774	59	smart00774, WRKY, DNA binding domain	2e-37

>gnl|CDD|145969 pfam03106, WRKY, WRKY DNA -binding domain

 Score =  131 bits (333), Expect = 3e-39
 Identities = 45/60 (75%), Positives = 48/60 (80%)

Query: 168 LEDGYRWRKYGQKAVKDSPFPRSYYRCTSASCNVKKRVERSYTDPSIVVTTYEGQHNHPS 227
           L+DGY WRKYGQK VK SPFPRSYYRCTS  C VKK+VERS  DP IV  TYEG+HNHP 
Sbjct: 1   LDDGYNWRKYGQKPVKGSPFPRSYYRCTSPGCPVKKQVERSSDDPQIVEITYEGEHNHPK 60

Length = 60

>gnl|CDD|214815 smart00774, WRKY, DNA binding domain

 Score =  127 bits (321), Expect = 2e-37
 Identities = 38/59 (64%), Positives = 46/59 (77%), Gaps = 1/59 (1%)

Query: 168 LEDGYRWRKYGQKAVKDSPFPRSYYRCTSA-SCNVKKRVERSYTDPSIVVTTYEGQHNH 225
           L+DGY+WRKYGQK +K SP+PRSYYRCT    C  KK+V+RS  DPS+V  TYEG+H H
Sbjct: 1   LDDGYQWRKYGQKVIKGSPYPRSYYRCTYTQGCPAKKQVQRSDDDPSVVEVTYEGEHTH 59

The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding. Length = 59

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	322
PF03106	60	WRKY: WRKY DNA -binding domain; InterPro: IPR00365	99.97
smart00774	59	WRKY DNA binding domain. The WRKY domain is a DNA	99.96
PF04500	62	FLYWCH: FLYWCH zinc finger domain; InterPro: IPR00	88.06
PF03101	91	FAR1: FAR1 DNA-binding domain; InterPro: IPR004330	82.44

>PF03106 WRKY: WRKY DNA -binding domain; InterPro: IPR003657 The WRKY domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger- like motif

Probab=99.97  E-value=5.6e-32  Score=203.63  Aligned_cols=60  Identities=68%  Similarity=1.337  Sum_probs=52.6

Q ss_pred             CCCchhhhhcCccccCCCCCCccceeccCCCCchhhhhhhccCCCCEEEEEEeccCCCCC
Q 020713          168 LEDGYRWRKYGQKAVKDSPFPRSYYRCTSASCNVKKRVERSYTDPSIVVTTYEGQHNHPS  227 (322)
Q Consensus       168 ldDGY~WRKYGQK~IKgsp~PRsYYRCt~~gC~akK~VQRs~~Dp~i~~tTY~GeHnH~~  227 (322)
                      ++|||+|||||||.|+|+++||+||||++.+|+|+|+|||+.+|+.+++|||+|+|||+.
T Consensus         1 ~~Dgy~WRKYGqK~i~g~~~pRsYYrCt~~~C~akK~Vqr~~~d~~~~~vtY~G~H~h~k   60 (60)
T PF03106_consen    1 LDDGYRWRKYGQKNIKGSPYPRSYYRCTHPGCPAKKQVQRSADDPNIVIVTYEGEHNHPK   60 (60)
T ss_dssp             --SSS-EEEEEEEEETTTTCEEEEEEEECTTEEEEEEEEEETTCCCEEEEEEES--SS--
T ss_pred             CCCCCchhhccCcccCCCceeeEeeeccccChhheeeEEEecCCCCEEEEEEeeeeCCCC
Confidence            589999999999999999999999999999999999999999999999999999999973

The WRKY domain is found in one or two copies in a superfamily of plant transcription factors involved in the regulation of various physiological programs that are unique to plants, including pathogen defence, senescence, trichome development and the biosynthesis of secondary metabolites. The WRKY domain binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core of the W box is essential for function and WRKY binding []. Some proteins known to contain a WRKY domain include Arabidopsis thaliana ZAP1 (Zinc-dependent Activator Protein-1) and AtWRKY44/TTG2, a protein involved in trichome development and anthocyanin pigmentation; and wild oat ABF1-2, two proteins involved in the gibberelic acid-induced expression of the alpha-Amy2 gene. Structural studies indicate that this domain is a four-stranded beta-sheet with a zinc binding pocket, forming a novel zinc and DNA binding structure []. The WRKYGQK residues correspond to the most N-terminal beta-strand, which enables extensive hydrophobic interactions, contributing to the structural stability of the beta-sheet.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2AYD_A 1WJ2_A 2LEX_A.

>smart00774 WRKY DNA binding domain

Probab=99.96  E-value=1.2e-30  Score=196.88  Aligned_cols=58  Identities=67%  Similarity=1.272  Sum_probs=56.5

Q ss_pred             CCCchhhhhcCccccCCCCCCccceeccC-CCCchhhhhhhccCCCCEEEEEEeccCCC
Q 020713          168 LEDGYRWRKYGQKAVKDSPFPRSYYRCTS-ASCNVKKRVERSYTDPSIVVTTYEGQHNH  225 (322)
Q Consensus       168 ldDGY~WRKYGQK~IKgsp~PRsYYRCt~-~gC~akK~VQRs~~Dp~i~~tTY~GeHnH  225 (322)
                      ++|||+|||||||.|+|+++||+||||++ ++|+|+|+|||+.+|+.+++|||+|+|||
T Consensus         1 ~~DGy~WRKYGQK~ikgs~~pRsYYrCt~~~~C~a~K~Vq~~~~d~~~~~vtY~g~H~h   59 (59)
T smart00774        1 LDDGYQWRKYGQKVIKGSPFPRSYYRCTYSQGCPAKKQVQRSDDDPSVVEVTYEGEHTH   59 (59)
T ss_pred             CCCcccccccCcEecCCCcCcceEEeccccCCCCCcccEEEECCCCCEEEEEEeeEeCC
Confidence            47999999999999999999999999999 89999999999999999999999999998

The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding.

>PF04500 FLYWCH: FLYWCH zinc finger domain; InterPro: IPR007588 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=88.06  E-value=0.16  Score=35.96  Aligned_cols=48  Identities=29%  Similarity=0.611  Sum_probs=23.7

Q ss_pred             CCCchhhhhcCccccCCCCCCccceeccCC---CCchhhhhhhccCCCCEEEEEEeccCCC
Q 020713          168 LEDGYRWRKYGQKAVKDSPFPRSYYRCTSA---SCNVKKRVERSYTDPSIVVTTYEGQHNH  225 (322)
Q Consensus       168 ldDGY~WRKYGQK~IKgsp~PRsYYRCt~~---gC~akK~VQRs~~Dp~i~~tTY~GeHnH  225 (322)
                      +-|||.-++....      ..+.|+||+..   +|+|+=.+.  .++ . .++...++|||
T Consensus        12 ~~~Gy~y~~~~~~------~~~~~WrC~~~~~~~C~a~~~~~--~~~-~-~~~~~~~~HnH   62 (62)
T PF04500_consen   12 VYDGYRYYFNKRN------DGKTYWRCSRRRSHGCRARLITD--AGD-G-RVVRTNGEHNH   62 (62)
T ss_dssp             EETTEEEEEEEE-------SS-EEEEEGGGTTS----EEEEE----T-T-EEEE-S---SS
T ss_pred             EECCeEEECcCCC------CCcEEEEeCCCCCCCCeEEEEEE--CCC-C-EEEECCCccCC
Confidence            3688887665544      45589999974   899977666  223 3 33344499998

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a potential FLYWCH Zn-finger domain found in a number of eukaryotic proteins. FLYWCH is a C2H2-type zinc finger characterised by five conserved hydrophobic residues, containing the conserved sequence motif: F/Y-X(n)-L-X(n)-F/Y-X(n)-WXCX(6-12)CX(17-22)HXH where X indicates any amino acid. This domain was first characterised in Drosophila Modifier of mdg4 proteins, Mod(mgd4), putative chromatin modulators involved in higher order chromatin domains. Mod(mdg4) proteins share a common N-terminal BTB/POZ domain, but differ in their C-terminal region, most containing C-terminal FLYWCH zinc finger motifs []. The FLYWCH domain in Mod(mdg4) proteins has a putative role in protein-protein interactions; for example, Mod(mdg4)-67.2 interacts with DNA-binding protein Su(Hw) via its FLYWCH domain. FLYWCH domains have been described in other proteins as well, including suppressor of killer of prune, Su(Kpn), which contains 4 terminal FLYWCH zinc finger motifs in a tandem array and a C-terminal glutathione SH-transferase (GST) domain []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2RPR_A.

>PF03101 FAR1: FAR1 DNA-binding domain; InterPro: IPR004330 Phytochrome A is the primary photoreceptor for mediating various far-red light-induced responses in higher plants

Probab=82.44  E-value=0.58  Score=36.06  Aligned_cols=30  Identities=33%  Similarity=0.555  Sum_probs=25.7

Q ss_pred             CCCchhhhhhhccCCCCEEEEEEeccCCCCC
Q 020713          197 ASCNVKKRVERSYTDPSIVVTTYEGQHNHPS  227 (322)
Q Consensus       197 ~gC~akK~VQRs~~Dp~i~~tTY~GeHnH~~  227 (322)
                      -+|+|+=.|-+.. |+...++.+..+|||+.
T Consensus        60 tgC~a~i~v~~~~-~~~w~v~~~~~~HNH~L   89 (91)
T PF03101_consen   60 TGCKARINVKRRK-DGKWRVTSFVLEHNHPL   89 (91)
T ss_pred             cCCCEEEEEEEcc-CCEEEEEECcCCcCCCC
Confidence            4999998888775 77888899999999974

It has been found that the proteins governing this response, which include FAR-RED ELONGATED HYPOCOTYL3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1), are a pair of homologous proteins sharing significant sequence homology to mutator-like transposases. These proteins appear to be novel transcription factors, which are essential for activating the expression of FHY1 and FHL (for FHY1-like) and related genes, whose products are required for light-induced phytochrome A nuclear accumulation and subsequent light responses in plants. The FRS (FAR1 Related Sequences) family of proteins share a similar domain structure to mutator-like transposases, including an N-terminal C2H2 zinc finger domain, a central putative core transposase domain, and a C-terminal SWIM motif (named after SWI2/SNF and MuDR transposases). It seems plausible that the FRS family represent transcription factors derived from mutator-like transposases [, ]. This entry represents a domain found in FAR1 and FRS proteins. It contains a WRKY like fold and is therefore most likely a zinc binding DNA-binding domain.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	322
1wj2_A	78	Solution Structure Of The C-Terminal Wrky Domain Of		7e-24
2ayd_A	76	Crystal Structure Of The C-Terminal Wrky Domainof A		9e-21

>pdb|1WJ2|A Chain A, Solution Structure Of The C-Terminal Wrky Domain Of Atwrky4 Length = 78

Iteration: 1
 Score =  107 bits (268), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 47/71 (66%), Positives = 55/71 (77%)
Query: 158 AFMTKSEVDHLEDGYRWRKYGQKAVKDSPFPRSYYRCTSASCNVKKRVERSYTDPSIVVT 217
              T SEVD L+DGYRWRKYGQK VK +P+PRSYY+CT+  C V+K VER+ TDP  VVT
Sbjct: 7   GVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVT 66
Query: 218 TYEGQHNHPSP 228
           TYEG+HNH  P
Sbjct: 67  TYEGKHNHDLP 77

>pdb|2AYD|A Chain A, Crystal Structure Of The C-Terminal Wrky Domainof Atwrky1, An Sa-Induced And Partially Npr1-Dependent Transcription Factor Length = 76

Iteration: 1
 Score = 97.4 bits (241), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 43/73 (58%), Positives = 54/73 (73%)
Query: 156 RFAFMTKSEVDHLEDGYRWRKYGQKAVKDSPFPRSYYRCTSASCNVKKRVERSYTDPSIV 215
           R    T++  D + DGYRWRKYGQK+VK SP+PRSYYRC+S  C VKK VERS  D  ++
Sbjct: 2   RIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLL 61
Query: 216 VTTYEGQHNHPSP 228
           +TTYEG+H+H  P
Sbjct: 62  ITTYEGKHDHDMP 74

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	322
1wj2_A	78	Probable WRKY transcription factor 4; DNA-binding	1e-50
2ayd_A	76	WRKY transcription factor 1; beta strands, zinc fi	5e-47
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A* Length = 78

 Score =  161 bits (409), Expect = 1e-50
 Identities = 47/76 (61%), Positives = 55/76 (72%)

Query: 153 REPRFAFMTKSEVDHLEDGYRWRKYGQKAVKDSPFPRSYYRCTSASCNVKKRVERSYTDP 212
                   T SEVD L+DGYRWRKYGQK VK +P+PRSYY+CT+  C V+K VER+ TDP
Sbjct: 2   SSGSSGVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDP 61

Query: 213 SIVVTTYEGQHNHPSP 228
             VVTTYEG+HNH  P
Sbjct: 62  KAVVTTYEGKHNHDLP 77

>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana} Length = 76

 Score =  152 bits (385), Expect = 5e-47
 Identities = 43/73 (58%), Positives = 54/73 (73%)

Query: 156 RFAFMTKSEVDHLEDGYRWRKYGQKAVKDSPFPRSYYRCTSASCNVKKRVERSYTDPSIV 215
           R    T++  D + DGYRWRKYGQK+VK SP+PRSYYRC+S  C VKK VERS  D  ++
Sbjct: 2   RIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLL 61

Query: 216 VTTYEGQHNHPSP 228
           +TTYEG+H+H  P
Sbjct: 62  ITTYEGKHDHDMP 74

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.3 bits (101), Expect = 9e-05
 Identities = 32/248 (12%), Positives = 69/248 (27%), Gaps = 83/248 (33%)

Query: 118 LNDEQVKVEEHVHDEQNQQKTKKQLKPKKTNQKRQREPRFAFMTKSEVDHL-------ED 170
             + Q + ++ +     +         K      Q  P+    +K E+DH+         
Sbjct: 11  TGEHQYQYKDILSV--FEDAFVDNFDCKDV----QDMPKSIL-SKEEIDHIIMSKDAVSG 63

Query: 171 GYR--W--RKYGQKAVK---------DSPFPRSYYRCTSASCNVKKRVERSYTDPSIVVT 217
             R  W      ++ V+         +  F             +   ++     PS++  
Sbjct: 64  TLRLFWTLLSKQEEMVQKFVEEVLRINYKF-------------LMSPIKTEQRQPSMMTR 110

Query: 218 TYEGQH----NHPSPL----LPRP--------TLGGVPHAGNGVVGSSFGMPMPAAFSQQ 261
            Y  Q     N         + R          L  +  A N ++    G+       + 
Sbjct: 111 MYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI---DGV---LGSGKT 164

Query: 262 QLPSLVNSLL-------PMNFGSSFINGPTTASFLHERRFCTPAAGTDLLKDHGLLQDIV 314
               +   +         M+F   ++N          +   +P    ++L+   LL  I 
Sbjct: 165 ---WVALDVCLSYKVQCKMDFKIFWLN---------LKNCNSPETVLEMLQK--LLYQID 210

Query: 315 PSHMLREE 322
           P+   R +
Sbjct: 211 PNWTSRSD 218

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.5 bits (99), Expect = 2e-04
 Identities = 28/251 (11%), Positives = 61/251 (24%), Gaps = 69/251 (27%)

Query: 4   KEVTKTKNNNNMGSSPFADHLSTGSQLRGVFDLYE--GEKGSLGFMELLGVQDFGSSSPP 61
           K +   +  +++  S  A      S    +F       E+    F+E +   ++      
Sbjct: 43  KSILSKEEIDHIIMSKDAV-----SGTLRLFWTLLSKQEEMVQKFVEEVLRINYK----- 92

Query: 62  SSSLFDMVQFQAQNQVPSKGASASSTVNVTKIECSELLNQPATPNSSSISSASSEALNDE 121
               F M   + + + PS                           +           ND 
Sbjct: 93  ----FLMSPIKTEQRQPS-------------------------MMTRMYIEQRDRLYNDN 123

Query: 122 QVKVEEHVHDEQNQQKTKKQLKPKKTNQKRQREPRFAF--MT---KS----EV------- 165
           QV  + +V   Q   K ++ L       + +         +    K+    +V       
Sbjct: 124 QVFAKYNVSRLQPYLKLRQAL------LELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQ 177

Query: 166 DHLEDGYRWRKYGQKAVKDSPFPRSYYRCTSASCNVKKRVERSYTDPSIVVTTYEG---- 221
             ++    W         ++              N   R + S      + +        
Sbjct: 178 CKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL 237

Query: 222 --QHNHPSPLL 230
                + + LL
Sbjct: 238 LKSKPYENCLL 248

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	322
2ayd_A	76	WRKY transcription factor 1; beta strands, zinc fi	100.0
1wj2_A	78	Probable WRKY transcription factor 4; DNA-binding	100.0

>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}

Probab=100.00  E-value=1.4e-35  Score=232.21  Aligned_cols=75  Identities=57%  Similarity=1.065  Sum_probs=72.6

Q ss_pred             ceeEEEeccccCCCCCchhhhhcCccccCCCCCCccceeccCCCCchhhhhhhccCCCCEEEEEEeccCCCCCCC
Q 020713          155 PRFAFMTKSEVDHLEDGYRWRKYGQKAVKDSPFPRSYYRCTSASCNVKKRVERSYTDPSIVVTTYEGQHNHPSPL  229 (322)
Q Consensus       155 ~R~~~~T~Sevd~ldDGY~WRKYGQK~IKgsp~PRsYYRCt~~gC~akK~VQRs~~Dp~i~~tTY~GeHnH~~P~  229 (322)
                      .|++|.|.+++++++|||+|||||||.|||+++||+||||++++|+|+|+|||+.+|+.+++|||+|+|||+.|.
T Consensus         1 ~r~~v~t~~~~~~~~DGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~   75 (76)
T 2ayd_A            1 SRIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMPP   75 (76)
T ss_dssp             CEEEEEEECSSSCCCCSSCEEEEEEECCTTCSSCEEEEEECSTTCCCEEEEEECSSSTTEEEEEEESCCSSCCCC
T ss_pred             CeEEEEecCCCCcCCCCchhhhCcccccCCCCCceeEeEcCCCCCCceeeEEEECCCCCEEEEEEccCcCCCCCC
Confidence            379999999999999999999999999999999999999999999999999999999999999999999999885

>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*

Probab=100.00  E-value=1.7e-35  Score=232.81  Aligned_cols=75  Identities=63%  Similarity=1.106  Sum_probs=69.5

Q ss_pred             ceeEEEeccccCCCCCchhhhhcCccccCCCCCCccceeccCCCCchhhhhhhccCCCCEEEEEEeccCCCCCCC
Q 020713          155 PRFAFMTKSEVDHLEDGYRWRKYGQKAVKDSPFPRSYYRCTSASCNVKKRVERSYTDPSIVVTTYEGQHNHPSPL  229 (322)
Q Consensus       155 ~R~~~~T~Sevd~ldDGY~WRKYGQK~IKgsp~PRsYYRCt~~gC~akK~VQRs~~Dp~i~~tTY~GeHnH~~P~  229 (322)
                      .+++|+|.+++++++|||+|||||||.|||+++||+||||++++|+|+|+|||+.+|+.+++|||+|+|||+.|.
T Consensus         4 ~~~~~~t~s~~~~~dDGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~   78 (78)
T 1wj2_A            4 GSSGVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA   78 (78)
T ss_dssp             ----CCCCCCCCCCCSSSCBCCCEEECCTTCSSCEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred             ceEEEeccCCCCcCCCCchhhhCcccccCCCcCeeEEeecCcCCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCCC
Confidence            468999999999999999999999999999999999999999999999999999999999999999999999884

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	322
d1wj2a_	71	g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cr	1e-35

>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 71

class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  121 bits (305), Expect = 1e-35
 Identities = 47/68 (69%), Positives = 55/68 (80%)

Query: 161 TKSEVDHLEDGYRWRKYGQKAVKDSPFPRSYYRCTSASCNVKKRVERSYTDPSIVVTTYE 220
           T SEVD L+DGYRWRKYGQK VK +P+PRSYY+CT+  C V+K VER+ TDP  VVTTYE
Sbjct: 3   TTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYE 62

Query: 221 GQHNHPSP 228
           G+HNH  P
Sbjct: 63  GKHNHDLP 70

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	322
d1wj2a_	71	WRKY DNA-binding protein 4 {Thale cress (Arabidops	100.0

>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=2.2e-35  Score=226.95  Aligned_cols=70  Identities=67%  Similarity=1.204  Sum_probs=67.3

Q ss_pred             EeccccCCCCCchhhhhcCccccCCCCCCccceeccCCCCchhhhhhhccCCCCEEEEEEeccCCCCCCC
Q 020713          160 MTKSEVDHLEDGYRWRKYGQKAVKDSPFPRSYYRCTSASCNVKKRVERSYTDPSIVVTTYEGQHNHPSPL  229 (322)
Q Consensus       160 ~T~Sevd~ldDGY~WRKYGQK~IKgsp~PRsYYRCt~~gC~akK~VQRs~~Dp~i~~tTY~GeHnH~~P~  229 (322)
                      .|.+++++++|||+|||||||.|+|+++||+||||++++|+|+|+|||+.+|+.+++|||+|+|||+.|.
T Consensus         2 ~t~~~~~~~dDGy~WRKYGQK~ikgs~~pRsYYrCt~~~C~a~K~Vqr~~~d~~~~~vtY~G~H~h~~Ps   71 (71)
T d1wj2a_           2 QTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA   71 (71)
T ss_dssp             CCCCCCCCCCSSSCBCCCEEECCTTCSSCEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred             ccccccccCCCCcEecccCceeccCCCCceEEEEccccCCCCcceEEEEcCCCCEEEEEEeeEeCCCCCC
Confidence            5678999999999999999999999999999999999999999999999999999999999999999884