Citrus Sinensis ID: 020718

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320--
Protein Sequence
MLQSQKILNSSPQILPPTPSPKIHPLVQNFPTSRSLPSLKQTCNLSRRELTLCGNSSLLLLWGSLVLEPFNLSRARADELPNADKNEQEQNCANKDPTKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHGGVRSYGVDAELARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKIGEVKTVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNCGLME
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccHHHcccHHHHHHHHHcccccccccccccccccccccHHHHHccccccccccEEEEEEEccEEEEEEEEEEcccccHHHHHHHHHHHccccccccccccEEEEccccEEEcccccccccccccccccccccccHHHHHHHHHcccccccccccccccEEEcccccccccccccccccccEEEccccccccccccEEEEccccccccccccEEEEEEccHHHHHHHHcccccccccccccHHHHHHHccHHHHHHHcccccccccEEEEEccccc
Secondary Structure Prediction (SSPRO)
ccccccEEccccccccccccccccccccccccccccHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHcccccccccHHHHHHccHHHccEEEEEEEEccEEEEEEEEEEcccccHHHHHHHHHHHHccccEccccccEEEEEcccEEEccccccccccccccccccccccHHHHHHHHHHcccccccEccccEEEEEEEcccccccHHHEEEcccccEEEEcccccccEcccEEEEccccHHHcccccEEEEEEEcHHHHHHHHcccEcccccccccEEEEEccccccHHHHcccccccccEEEEEcccccc
Coil and Loop (DISEMBL)
mlqsqkilnsspqilpptpspkihplvqnfptsrslpslkqtcnlsrreltlcgnsslLLLWGslvlepfnlsraradelpnadkneqeqncankdptkrVFLDISIDGKSAGRIVIGlygdsapagaARFSSLVSGTAGISYRRKEFIKIMPnyvqhggvrsygvdaelarrsgsnletERLMEEWKannercpgtknlagtvgiivrdpskpppkikLVARQgkleidqeevgkdpngteFVIVTkdspeldassLVVGRVLEGMEVAEKIGEVKtvqentgspyFRVAKLIGdkravvaergfnrpyskVLVTNCGLME
Flexible Loop (DISEMBL)
mlqsqkilnsspqilpptpsPKIHPLVQNFPTSRSLPSLKQTCNLSRRELTLCGNSSLLLLWGSLVLEPFNLSRARADelpnadkneqeqncankdptkrVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHGGVRSYGVDAELARRSGSNLETERLMEEwkannercpgtknlagtvgiivrdpskpppkiklvarqgkleidqeevgkdpngTEFVivtkdspeldaSSLVVGRVLEGMEVAEKigevktvqentgspyfrvaKLIGDKRavvaergfnrpyskvlvtncglme
Low Complexity Region (SEG)
MLQSQKILNSSPQILPPTPSPKIHPLVQNFPTSRSLPSLKQTCNLSRREltlcgnssllllwgslvlEPFNLSRARADELPNADKNEQEQNCANKDPTKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHGGVRSYGVDAELARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKIGEVKTVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNCGLME
Disordered region (IsUnstruct)
*****************************************TCNLSRRELTLCGNSSLLLLWGSLVLEPFNL***************************RVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHGGVRSYGVDAEL**************************TKNLAGTVGIIV*********************************EFVIVTK****LDASSLVVGRVLEGMEVAEKIGEVKTVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNCG***
Disordered Region (DISOPRED)
**********************************************RRELTLCGNSSLLLLWGSLVLEPFNLSR*************************RVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHGGVRSYGVDAELARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKIGEV***********FRVAKLIGDKRAVVAERGFNRPYSKVLVTNCGLME
Disordered Region (DISEMBL)
MLQSQKILNSSPQILPPTPSPKIHPLVQNFPTSRSLPSLKQTCNLSRRELTLCGNSSLLLLWGSLVLEPFNLSRARADELPNADKNEQEQNCANKDPTKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHGGVRSYGVDAELARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKIGEVKTVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNCGLME
Disordered Region (DISPRO)
*********S*PQILPPTPS*KIHPLVQNFPTSRSLPSLKQTCNLSRRELTLCGNSSLLLLWGSLVLEPFNLSRARADE*************ANKDPTKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHGGVRSYGVDAELARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKIGEVKTVQENTGSPYFRVAKLIGDKRAVV*ERGFNRPYSKVLVTNCG*M*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiihhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLQSQKILNSSPQILPPTPSPKIHPLVQNFPTSRSLPSLKQTCNLSRRELTLCGNSSLLLLWGSLVLEPFNLSRARADELPNADKNEQEQNCANKDPTKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHGGVRSYGVDAELARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKIGEVKTVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNCGLME
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	322	2.2.26 [Sep-21-2011]
Q8LDP4	201	Peptidyl-prolyl cis-trans	no	no	0.444	0.711	0.279	2e-15
Q41651	248	Peptidyl-prolyl cis-trans	N/A	no	0.434	0.564	0.295	5e-15
Q9SP02	204	Peptidyl-prolyl cis-trans	no	no	0.444	0.700	0.274	3e-14
P23284	216	Peptidyl-prolyl cis-trans	yes	no	0.509	0.759	0.244	2e-13
P24369	216	Peptidyl-prolyl cis-trans	yes	no	0.472	0.703	0.273	2e-13
P24367	207	Peptidyl-prolyl cis-trans	yes	no	0.509	0.792	0.253	4e-13
Q9TW32	197	Peptidyl-prolyl cis-trans	yes	no	0.5	0.817	0.295	5e-13
Q9ASS6	259	Peptidyl-prolyl cis-trans	no	no	0.506	0.629	0.286	6e-13
P80311	216	Peptidyl-prolyl cis-trans	yes	no	0.450	0.671	0.270	6e-13
Q4WP12	209	Peptidyl-prolyl cis-trans	yes	no	0.434	0.669	0.306	7e-13

>sp|Q8LDP4|CP19D_ARATH Peptidyl-prolyl cis-trans isomerase CYP19-4 OS=Arabidopsis thaliana GN=CYP19-4 PE=1 SV=2

 Score = 83.2 bits (204), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 52/186 (27%), Positives = 88/186 (47%), Gaps = 43/186 (23%)

Query: 95  KDPTKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGIS-------YRRKE 147
           K+ T +V+ D+ IDGKSAGR+VIGL+G + P  A  F +L +G  G+        Y+  +
Sbjct: 28  KEVTHKVYFDVEIDGKSAGRVVIGLFGKAVPKTAENFRALCTGEKGVGKSGKPLHYKGSK 87

Query: 148 FIKIMPNYVQHGGVRSYGVDAELARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGII 207
           F +I+P+++  GG  ++G         G ++  ++  +E        PG  ++A +    
Sbjct: 88  FHRIIPSFMIQGGDFTHG-----NGMGGESIYGQKFADENFKLKHTGPGVLSMANS---- 138

Query: 208 VRDPSKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGM 267
                                      G+D NG++F I T  +  LD   +V G+V++GM
Sbjct: 139 ---------------------------GEDTNGSQFFITTVTTSWLDGRHVVFGKVVQGM 171

Query: 268 EVAEKI 273
           +V  KI
Sbjct: 172 DVVYKI 177

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. May be involved during embryogenesis and organ development by regulating the folding of EMB30/GNOM, and thus, by modulating its activity.
Arabidopsis thaliana (taxid: 3702)
EC: 5EC: .EC: 2EC: .EC: 1EC: .EC: 8

>sp|Q41651|CYPB_VICFA Peptidyl-prolyl cis-trans isomerase, chloroplastic OS=Vicia faba PE=1 SV=1

 Score = 82.0 bits (201), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 52/176 (29%), Positives = 79/176 (44%), Gaps = 36/176 (20%)

Query: 98  TKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQ 157
           T ++F DI I G+SAGRIVIGL+GD+ P     F +L +G  G  Y+   F +I+PN++ 
Sbjct: 81  TSKIFFDIEIGGESAGRIVIGLFGDAVPKTVENFKTLSTGAKGYGYQGSFFHRIIPNFMI 140

Query: 158 HGGVRSYGVDAELARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPK 217
            GG  + G         GS  E E    +        PG  ++A                
Sbjct: 141 QGGDFTEGNGTGGVSIYGSKFEDESFDLKHVG-----PGVLSMA---------------- 179

Query: 218 IKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKI 273
                            G + NG++F I T  +P LD   +V G V+EG++V +++
Sbjct: 180 ---------------NAGPNTNGSQFFICTVPTPWLDNRHVVFGHVIEGLDVVKQL 220

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Vicia faba (taxid: 3906)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q9SP02|CP20A_ARATH Peptidyl-prolyl cis-trans isomerase CYP20-1 OS=Arabidopsis thaliana GN=CYP20-1 PE=1 SV=1

 Score = 79.3 bits (194), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 84/186 (45%), Gaps = 43/186 (23%)

Query: 95  KDPTKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGIS-------YRRKE 147
           K+ T +V+ D+ IDGK+AGRIV+GL+G + P     F +L +G  GI        Y+   
Sbjct: 31  KEITHKVYFDVEIDGKAAGRIVMGLFGKTVPKTVENFRALCTGEKGIGKNGKALHYKGSS 90

Query: 148 FIKIMPNYVQHGGVRSYGVDAELARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGII 207
           F +I+P+++  GG  ++G         G ++  E+  +E        PG  ++A      
Sbjct: 91  FHRIIPSFMLQGGDFTHG-----NGMGGESIYGEKFADENFKLKHTGPGFLSMA------ 139

Query: 208 VRDPSKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGM 267
                                      G+D NG++F I T  +  LD   +V G+V+ GM
Sbjct: 140 -------------------------NAGQDTNGSQFFITTVTTSWLDGRHVVFGKVVTGM 174

Query: 268 EVAEKI 273
           +V  K+
Sbjct: 175 DVVYKV 180

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. Seems to be involved in root development.

Arabidopsis thaliana (taxid: 3702)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|P23284|PPIB_HUMAN Peptidyl-prolyl cis-trans isomerase B OS=Homo sapiens GN=PPIB PE=1 SV=2

 Score = 76.6 bits (187), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/225 (24%), Positives = 91/225 (40%), Gaps = 61/225 (27%)

Query: 98  TKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQ 157
           T +V+ D+ I  +  GR++ GL+G + P     F +L +G  G  Y+  +F +++ +++ 
Sbjct: 43  TVKVYFDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFMI 102

Query: 158 HGGVRSYGVDAELARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPK 217
            GG  + G         G ++  ER  +E        PG  ++A                
Sbjct: 103 QGGDFTRGDGT-----GGKSIYGERFPDENFKLKHYGPGWVSMA---------------- 141

Query: 218 IKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKIGEVK 277
                            GKD NG++F I T  +  LD   +V G+VLEGMEV  K+   K
Sbjct: 142 ---------------NAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVESTK 186

Query: 278 TVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNCGLME 322
           T                 D R        ++P   V++ +CG +E
Sbjct: 187 T-----------------DSR--------DKPLKDVIIADCGKIE 206

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Homo sapiens (taxid: 9606)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|P24369|PPIB_MOUSE Peptidyl-prolyl cis-trans isomerase B OS=Mus musculus GN=Ppib PE=2 SV=2

 Score = 76.6 bits (187), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/190 (27%), Positives = 82/190 (43%), Gaps = 38/190 (20%)

Query: 91  NCANKDP--TKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEF 148
           N   K P  T +V+ D+ I  +S GR+V GL+G + P     F +L +G  G  Y+  +F
Sbjct: 34  NDKKKGPKVTVKVYFDLQIGDESVGRVVFGLFGKTVPKTVDNFVALATGEKGFGYKNSKF 93

Query: 149 IKIMPNYVQHGGVRSYGVDAELARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGIIV 208
            +++ +++  GG  + G         G ++  ER  +E        PG  ++A       
Sbjct: 94  HRVIKDFMIQGGDFTRG-----DGTGGKSIYGERFPDENFKLKHYGPGWVSMA------- 141

Query: 209 RDPSKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGME 268
                                     GKD NG++F I T  +  LD   +V G+VLEGM+
Sbjct: 142 ------------------------NAGKDTNGSQFFITTVKTSWLDGKHVVFGKVLEGMD 177

Query: 269 VAEKIGEVKT 278
           V  K+   KT
Sbjct: 178 VVRKVESTKT 187

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Mus musculus (taxid: 10090)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|P24367|PPIB_CHICK Peptidyl-prolyl cis-trans isomerase B OS=Gallus gallus GN=PPIB PE=2 SV=1

 Score = 75.9 bits (185), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 57/225 (25%), Positives = 92/225 (40%), Gaps = 61/225 (27%)

Query: 98  TKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQ 157
           T +VF D+ +  + AGR+VIGL+G + P     F +L +G  G  ++  +F +++ +++ 
Sbjct: 34  TAKVFFDLRVGEEDAGRVVIGLFGKTVPKTVENFVALATGEKGFGFKGSKFHRVIKDFMI 93

Query: 158 HGGVRSYGVDAELARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPK 217
            GG        +  R  G+                   G K++ G           P   
Sbjct: 94  QGG--------DFTRGDGT-------------------GGKSIYG--------DRFPDEN 118

Query: 218 IKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKIGEVK 277
            KL    G   +     GKD NG++F I T  +  LD   +V G+VLEGM+V  K+   K
Sbjct: 119 FKL-KHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMDVVRKVENTK 177

Query: 278 TVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNCGLME 322
           T                 D R        ++P   V + +CG +E
Sbjct: 178 T-----------------DSR--------DKPLKDVTIADCGTIE 197

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Gallus gallus (taxid: 9031)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q9TW32|PPIB_DICDI Peptidyl-prolyl cis-trans isomerase B OS=Dictyostelium discoideum GN=cypB PE=1 SV=1

 Score = 75.5 bits (184), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 62/210 (29%), Positives = 98/210 (46%), Gaps = 49/210 (23%)

Query: 93  ANKDP--TKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGIS-------Y 143
           A KDP  T +VF DI ID K AGRIV GLYG + P     F +L +G  G+        Y
Sbjct: 22  AGKDPKITNKVFFDIEIDNKPAGRIVFGLYGKTVPKTVENFRALCTGEKGLGTSGKPLHY 81

Query: 144 RRKEFIKIMPNYVQHGGVRSYGVDAELARRSGSNLETERLMEEWKANNERCPGTKNLAGT 203
           +  +F +I+PN++  GG        +  R  G+  E+   +   K N+E           
Sbjct: 82  KDSKFHRIIPNFMIQGG--------DFTRGDGTGGES---IYGKKFNDENF--------- 121

Query: 204 VGIIVRDPSKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRV 263
                        KIK  ++ G L +     G + NG++F I T  +  LD    V G V
Sbjct: 122 -------------KIKH-SKPGLLSM--ANAGPNTNGSQFFITTVVTSWLDGRHTVFGEV 165

Query: 264 LEGMEVAEKIGEVKTVQENTGSPYFRVAKL 293
           +EGM++ + +   +++   +G+P  ++AK+
Sbjct: 166 IEGMDIVKLL---ESIGSQSGTPS-KIAKI 191

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Dictyostelium discoideum (taxid: 44689)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q9ASS6|CP20B_ARATH Peptidyl-prolyl cis-trans isomerase CYP20-2, chloroplastic OS=Arabidopsis thaliana GN=CYP20-2 PE=1 SV=1

 Score = 75.1 bits (183), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 65/227 (28%), Positives = 95/227 (41%), Gaps = 64/227 (28%)

Query: 98  TKRVFLDISID---GKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPN 154
           T +V+ DIS+    GK AGRIVIGLYGD  P     F +L +G  G  Y+   F +++ +
Sbjct: 89  THKVYFDISVGNPVGKLAGRIVIGLYGDDVPQTVENFRALCTGEKGFGYKGSTFHRVIRD 148

Query: 155 YVQHGGVRSYGVDAELARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKP 214
           ++  GG      D E                  K N           GT G  V   +  
Sbjct: 149 FMIQGG------DFE------------------KGN-----------GTGGKSVYGRTFK 173

Query: 215 PPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKIG 274
               KL +  G   +     G + NG++F I T  +  LD   +V G+V+EGMEV + I 
Sbjct: 174 DENFKL-SHVGPGVLSMANAGPNTNGSQFFICTIKTSWLDGRHVVFGQVIEGMEVVKLIE 232

Query: 275 EVKTVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNCGLM 321
           E +T                        +RG +RP  KV++ +CG +
Sbjct: 233 EQET------------------------DRG-DRPRKKVVIADCGQL 254

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Arabidopsis thaliana (taxid: 3702)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|P80311|PPIB_BOVIN Peptidyl-prolyl cis-trans isomerase B OS=Bos taurus GN=PPIB PE=1 SV=4

 Score = 75.1 bits (183), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 79/181 (43%), Gaps = 36/181 (19%)

Query: 98  TKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQ 157
           T +V+ D+ I  +  GR+VIGL+G + P     F +L +G  G  Y+  +F +++ +++ 
Sbjct: 43  TVKVYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFGYKDSKFHRVIKDFMI 102

Query: 158 HGGVRSYGVDAELARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPK 217
            GG  + G         G ++  ER  +E        PG  ++A                
Sbjct: 103 QGGDFTRG-----DGTGGKSIYGERFPDENFKLKHYGPGWVSMA---------------- 141

Query: 218 IKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKIGEVK 277
                            GKD NG++F I T  +  LD   +V G+VLEGM+V  K+   K
Sbjct: 142 ---------------NAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMDVVRKVESTK 186

Query: 278 T 278
           T
Sbjct: 187 T 187

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Bos taurus (taxid: 9913)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q4WP12|PPIB_ASPFU Peptidyl-prolyl cis-trans isomerase B OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=cpr2 PE=3 SV=1

 Score = 74.7 bits (182), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 54/176 (30%), Positives = 78/176 (44%), Gaps = 36/176 (20%)

Query: 98  TKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQ 157
           T +VF DI    K  GRIV+GLYG + P  A  F +L +G  G  Y    F +++ +++ 
Sbjct: 35  TSKVFFDIEHGDKPLGRIVLGLYGKTVPKTAENFRALATGEKGFGYEGSTFHRVIKSFMI 94

Query: 158 HGGVRSYGVDAELARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPK 217
            GG  + G         G ++  E+  +E    N +   T                    
Sbjct: 95  QGGDFTRGDGT-----GGKSIYGEKFADE----NFKLRHT-------------------- 125

Query: 218 IKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKI 273
                R+G L +     GKD NG++F I T  +P LD   +V G VLEG EV E+I
Sbjct: 126 -----RKGLLSMAN--AGKDTNGSQFFITTVPTPWLDGRHVVFGEVLEGYEVVEQI 174

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) (taxid: 330879)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	322
224121348	328	predicted protein [Populus trichocarpa]	0.984	0.966	0.715	1e-122
356563117	332	PREDICTED: peptidyl-prolyl cis-trans iso	0.996	0.966	0.672	1e-121
225455830	323	PREDICTED: peptidyl-prolyl cis-trans iso	0.900	0.897	0.757	1e-120
297734155	366	unnamed protein product [Vitis vinifera]	0.900	0.792	0.757	1e-120
255541858	329	peptidyl-prolyl cis-trans isomerase B, p	0.996	0.975	0.718	1e-113
357477587	322	Peptidyl-prolyl cis-trans isomerase [Med	0.978	0.978	0.656	1e-111
356513894	387	PREDICTED: uncharacterized protein LOC10	0.763	0.635	0.734	1e-106
449439375	320	PREDICTED: peptidyl-prolyl cis-trans iso	0.913	0.918	0.671	1e-101
449486867	253	PREDICTED: peptidyl-prolyl cis-trans iso	0.717	0.913	0.748	2e-92
18410525	317	cyclophilin-like peptidyl-prolyl cis-tra	0.968	0.984	0.566	6e-89

>gi|224121348|ref|XP_002318560.1| predicted protein [Populus trichocarpa] gi|222859233|gb|EEE96780.1| predicted protein [Populus trichocarpa]

 Score =  442 bits (1138), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 236/330 (71%), Positives = 268/330 (81%), Gaps = 13/330 (3%)

Query: 1   MLQSQKILNSSPQILPPTPSPKIHP-LVQNFPTSRSLPSLKQTCNLSRRELTLCGNSSLL 59
           ML++ ++  SS ++    P P  HP  +QN P+S S   +KQ C LSRR+L + GNSSLL
Sbjct: 1   MLRNPEVFQSSIKLH--LPIPPTHPSQIQNIPSSPSSTVIKQCCKLSRRKLAIFGNSSLL 58

Query: 60  LLWGSLVLEPFNLSRARADE-LPNADKN-EQEQN-------CANKDPTKRVFLDISIDGK 110
           LL  S  LEPFN S+A+A+E LP+A++N  QE+N       C+NK  T R FLDISIDG+
Sbjct: 59  LLLSSQTLEPFNTSKAKAEEALPDANENGPQEENNTSTRPECSNKT-TARAFLDISIDGE 117

Query: 111 SAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHGGVRSYGVDAEL 170
             GRIV+GLYG+  PAGAARFS LV G AG+SYRRKEFIKI PNYVQHGGVRSYGVDAEL
Sbjct: 118 PVGRIVVGLYGEDVPAGAARFSDLVRGAAGVSYRRKEFIKITPNYVQHGGVRSYGVDAEL 177

Query: 171 ARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQGKLEID 230
           A+R+GSNL  E L++EW+   E CPG KNLAGTV IIVRDPSKPPPK+KLVAR+GKLEID
Sbjct: 178 AQRTGSNLAAESLVDEWQREYETCPGIKNLAGTVSIIVRDPSKPPPKLKLVARKGKLEID 237

Query: 231 QEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKIGEVKTVQENTGSPYFRV 290
           QEEVG DPNGTEFVI TKDSPELDASSLVVGRVLEGMEV EKIG+VKTVQENT SPYFRV
Sbjct: 238 QEEVGTDPNGTEFVIATKDSPELDASSLVVGRVLEGMEVVEKIGQVKTVQENTTSPYFRV 297

Query: 291 AKLIGDKRAVVAERGFNRPYSKVLVTNCGL 320
           AKLIGDKRAVVAERGFNRPYSKV+VTNCGL
Sbjct: 298 AKLIGDKRAVVAERGFNRPYSKVVVTNCGL 327

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356563117|ref|XP_003549812.1| PREDICTED: peptidyl-prolyl cis-trans isomerase B-like [Glycine max]

 Score =  439 bits (1128), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 224/333 (67%), Positives = 259/333 (77%), Gaps = 12/333 (3%)

Query: 1   MLQSQKILNSSPQIL-PPT--PSPKIHPLVQNFPTSRSLPSLKQTCNLSRRELTLCGNSS 57
           MLQ+ +++  S Q   PPT   +P + P  Q  PTS S P LKQ C  SRRELT+  NS 
Sbjct: 1   MLQNPRVVRYSAQPFNPPTRMATPSLSPF-QLIPTSPSFPILKQQCRFSRRELTIFSNSC 59

Query: 58  LLLLWGSLVLEPFNLSRARAD----ELPNADKNEQE----QNCANKDPTKRVFLDISIDG 109
           LLLL G+      NL+ A  D       N+DK E+      +C  + PTK+VFLDISIDG
Sbjct: 60  LLLLLGAQARAEENLTLAEEDVDVANTSNSDKPEENVAVTPSCTERKPTKQVFLDISIDG 119

Query: 110 KSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHGGVRSYGVDAE 169
           +  GR+ IGLYGD  PAG  RFS + SG AGISYRRKEF+KIMPNYVQHGG+RSYGVDAE
Sbjct: 120 EPVGRVTIGLYGDDVPAGVDRFSKIASGAAGISYRRKEFVKIMPNYVQHGGLRSYGVDAE 179

Query: 170 LARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQGKLEI 229
           LA ++GSNL T RL EEW+   ERCPGTKN+AG+VGIIVR+PSKPPPK+KL+A+QGKLEI
Sbjct: 180 LASKTGSNLGTSRLGEEWEREYERCPGTKNVAGSVGIIVRNPSKPPPKLKLIAKQGKLEI 239

Query: 230 DQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKIGEVKTVQENTGSPYFR 289
           D+EEVG DPNGTEFVI TKDSPELDAS+LV+GRV+ GMEV ++IG VKTVQENTGSPYFR
Sbjct: 240 DEEEVGNDPNGTEFVIATKDSPELDASTLVIGRVIGGMEVVQRIGLVKTVQENTGSPYFR 299

Query: 290 VAKLIGDKRAVVAERGFNRPYSKVLVTNCGLME 322
           VAKLIGDKRAVVAERGFNRPYSKV+VTNCGLME
Sbjct: 300 VAKLIGDKRAVVAERGFNRPYSKVIVTNCGLME 332

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225455830|ref|XP_002273001.1| PREDICTED: peptidyl-prolyl cis-trans isomerase B-like [Vitis vinifera]

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 228/301 (75%), Positives = 254/301 (84%), Gaps = 11/301 (3%)

Query: 29  NFPTSRSLPSLKQTCNLSRRELTLCGNSSLLLLWGSLVLEPFNLSRARADE--LPNADKN 86
           N PTS S P LKQ C  SRR+ T+C NSSLLLL GS ++E    SRARA+E    +ADK 
Sbjct: 27  NIPTSPSPPILKQQCKFSRRDFTICSNSSLLLLLGSALVE----SRARAEEGSAVDADKT 82

Query: 87  EQEQ-----NCANKDPTKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGI 141
           +  Q     NC  K PTKR FLDISIDG+ AGRIVIGLYGD APAGAARFS LVSG AGI
Sbjct: 83  DGLQENAPPNCTAKAPTKRAFLDISIDGEPAGRIVIGLYGDDAPAGAARFSGLVSGAAGI 142

Query: 142 SYRRKEFIKIMPNYVQHGGVRSYGVDAELARRSGSNLETERLMEEWKANNERCPGTKNLA 201
           SYRRKEF+KIMPNYVQHGGVRSYGVDAELA+R+GSNL  E L+ EW+  NE+CPGTKNLA
Sbjct: 143 SYRRKEFVKIMPNYVQHGGVRSYGVDAELAKRTGSNLAAESLVTEWEKMNEKCPGTKNLA 202

Query: 202 GTVGIIVRDPSKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVG 261
           G+VGI+VRDP+KPPPKIKLVAR GKLEID+E+VG DPNGTEFVI +KDSPELD S+LV+G
Sbjct: 203 GSVGIVVRDPTKPPPKIKLVARGGKLEIDEEDVGADPNGTEFVITSKDSPELDTSTLVIG 262

Query: 262 RVLEGMEVAEKIGEVKTVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNCGLM 321
           RVLEGMEV EKIG+VKTVQENTGSPYFRVAKLIGDKRA VAERGFNRPYSKVL+TNCGL+
Sbjct: 263 RVLEGMEVVEKIGQVKTVQENTGSPYFRVAKLIGDKRATVAERGFNRPYSKVLITNCGLI 322

Query: 322 E 322
           +
Sbjct: 323 Q 323

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297734155|emb|CBI15402.3| unnamed protein product [Vitis vinifera]

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 228/301 (75%), Positives = 254/301 (84%), Gaps = 11/301 (3%)

Query: 29  NFPTSRSLPSLKQTCNLSRRELTLCGNSSLLLLWGSLVLEPFNLSRARADE--LPNADKN 86
           N PTS S P LKQ C  SRR+ T+C NSSLLLL GS ++E    SRARA+E    +ADK 
Sbjct: 70  NIPTSPSPPILKQQCKFSRRDFTICSNSSLLLLLGSALVE----SRARAEEGSAVDADKT 125

Query: 87  EQEQ-----NCANKDPTKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGI 141
           +  Q     NC  K PTKR FLDISIDG+ AGRIVIGLYGD APAGAARFS LVSG AGI
Sbjct: 126 DGLQENAPPNCTAKAPTKRAFLDISIDGEPAGRIVIGLYGDDAPAGAARFSGLVSGAAGI 185

Query: 142 SYRRKEFIKIMPNYVQHGGVRSYGVDAELARRSGSNLETERLMEEWKANNERCPGTKNLA 201
           SYRRKEF+KIMPNYVQHGGVRSYGVDAELA+R+GSNL  E L+ EW+  NE+CPGTKNLA
Sbjct: 186 SYRRKEFVKIMPNYVQHGGVRSYGVDAELAKRTGSNLAAESLVTEWEKMNEKCPGTKNLA 245

Query: 202 GTVGIIVRDPSKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVG 261
           G+VGI+VRDP+KPPPKIKLVAR GKLEID+E+VG DPNGTEFVI +KDSPELD S+LV+G
Sbjct: 246 GSVGIVVRDPTKPPPKIKLVARGGKLEIDEEDVGADPNGTEFVITSKDSPELDTSTLVIG 305

Query: 262 RVLEGMEVAEKIGEVKTVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNCGLM 321
           RVLEGMEV EKIG+VKTVQENTGSPYFRVAKLIGDKRA VAERGFNRPYSKVL+TNCGL+
Sbjct: 306 RVLEGMEVVEKIGQVKTVQENTGSPYFRVAKLIGDKRATVAERGFNRPYSKVLITNCGLI 365

Query: 322 E 322
           +
Sbjct: 366 Q 366

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255541858|ref|XP_002511993.1| peptidyl-prolyl cis-trans isomerase B, ppib, putative [Ricinus communis] gi|223549173|gb|EEF50662.1| peptidyl-prolyl cis-trans isomerase B, ppib, putative [Ricinus communis]

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 237/330 (71%), Positives = 265/330 (80%), Gaps = 9/330 (2%)

Query: 1   MLQSQKILNSSPQILPPTPSPKIHPLVQNFPTSRSLPSLKQTCNLSRRELTLCGNSSLLL 60
           MLQS KI++SS ++  P P     P +QN PTS S P +KQ CN SRREL +  NSSLLL
Sbjct: 1   MLQSPKIIHSSLKLQSPLPPAPSPPEIQNIPTSPSFPIIKQCCNFSRRELAIFSNSSLLL 60

Query: 61  LWGSLVLEPFNLSRARADE-LPNADKNEQEQN-------CANKDPTKRVFLDISIDGKSA 112
           L  S  L+PFNLS+A+A E LP   +N+Q++        C++   TK+ FLDISIDGK  
Sbjct: 61  LLSSQTLQPFNLSKAQAKENLPGTSENDQQEEKLSTSSNCSSNTTTKKAFLDISIDGKPV 120

Query: 113 GRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHGGVRSYGVDAELAR 172
           GRIVIGL G+S P G ARFSSLVSG AGISYRRKEFIKIMPNYVQHGGVRSYGVDAELA+
Sbjct: 121 GRIVIGLNGESTPTGVARFSSLVSGAAGISYRRKEFIKIMPNYVQHGGVRSYGVDAELAK 180

Query: 173 RSGSNLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQGKLEIDQE 232
            +GSNL  E L +EW   NE C G KNLAGTV IIVRDP KPPPK+KL+AR+GKLEIDQE
Sbjct: 181 STGSNLAAESLADEWDRENE-CSGIKNLAGTVSIIVRDPLKPPPKLKLIARKGKLEIDQE 239

Query: 233 EVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKIGEVKTVQENTGSPYFRVAK 292
           EVG DPNGTEFVI TKDSPELDAS+LV+GRVLEGMEV EKIG+VKTVQENT SPYFRVAK
Sbjct: 240 EVGTDPNGTEFVIATKDSPELDASNLVIGRVLEGMEVVEKIGQVKTVQENTSSPYFRVAK 299

Query: 293 LIGDKRAVVAERGFNRPYSKVLVTNCGLME 322
           LIGDKRAVVAERGFNRPYSKV+VTNCGLME
Sbjct: 300 LIGDKRAVVAERGFNRPYSKVVVTNCGLME 329

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357477587|ref|XP_003609079.1| Peptidyl-prolyl cis-trans isomerase [Medicago truncatula] gi|357477653|ref|XP_003609112.1| Peptidyl-prolyl cis-trans isomerase [Medicago truncatula] gi|355510134|gb|AES91276.1| Peptidyl-prolyl cis-trans isomerase [Medicago truncatula] gi|355510167|gb|AES91309.1| Peptidyl-prolyl cis-trans isomerase [Medicago truncatula]

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 216/329 (65%), Positives = 254/329 (77%), Gaps = 14/329 (4%)

Query: 1   MLQSQKILNSSPQIL--PPTPSPKIHPLVQNFPTSRSLPSLKQTCNLSRRELTLCGNSSL 58
           MLQ  ++L SSPQ        S   H   Q  PT+   P+LKQ C LSRREL +  N+ L
Sbjct: 1   MLQHPRVLRSSPQPFNPSSHTSTPSHSSFQQLPTTPHFPNLKQQCRLSRRELAIYSNTCL 60

Query: 59  LLLWGSLVLEPFNLSRARADE-LPNADKNEQE----QNCANKDPTKRVFLDISIDGKSAG 113
           LLL GS        SRARA E + N+DK  ++     +C  + PTK+VF D+SID +  G
Sbjct: 61  LLLLGSG-------SRARAAEDVTNSDKLGEDLTKTPSCTERKPTKQVFFDVSIDREPVG 113

Query: 114 RIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHGGVRSYGVDAELARR 173
           R+ I LYGD  PAG  RFS +VSG AGISYRRKEF+KIMPNYVQHGG+RSYGVDAELA +
Sbjct: 114 RVTIELYGDDVPAGVERFSKIVSGAAGISYRRKEFVKIMPNYVQHGGLRSYGVDAELANK 173

Query: 174 SGSNLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQGKLEIDQEE 233
           +GSNL TE+L+EEW++  E+CPGTKN+AG+VGIIVRDPSKPPPK KLVAR GKLEIDQEE
Sbjct: 174 TGSNLATEKLVEEWESVYEKCPGTKNVAGSVGIIVRDPSKPPPKFKLVARLGKLEIDQEE 233

Query: 234 VGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKIGEVKTVQENTGSPYFRVAKL 293
           VG DPNGTEFVI TKDSPELDAS+LV+GRV+ GME  +KI +VKTVQENT SPYFRVAKL
Sbjct: 234 VGTDPNGTEFVIATKDSPELDASTLVIGRVVGGMEFVQKISQVKTVQENTSSPYFRVAKL 293

Query: 294 IGDKRAVVAERGFNRPYSKVLVTNCGLME 322
           IGDKRAVVAERGFNRPYSKV++TNCG+++
Sbjct: 294 IGDKRAVVAERGFNRPYSKVVITNCGVIQ 322

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356513894|ref|XP_003525643.1| PREDICTED: uncharacterized protein LOC100800469 [Glycine max]

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 185/252 (73%), Positives = 214/252 (84%), Gaps = 6/252 (2%)

Query: 77  ADELPNADKNEQEQN------CANKDPTKRVFLDISIDGKSAGRIVIGLYGDSAPAGAAR 130
           A+++ N   ++ E+N      C  + PTK+ FLD+SIDG+  GRI IGLYGD  PAG  R
Sbjct: 136 AEDVANTGSDKPEENVATTPSCTERKPTKQAFLDVSIDGEPVGRITIGLYGDDVPAGVDR 195

Query: 131 FSSLVSGTAGISYRRKEFIKIMPNYVQHGGVRSYGVDAELARRSGSNLETERLMEEWKAN 190
           FS + SG AGISYRRKEF+KIMPNYVQHGG+RSYGVD ELA ++GSNL   RL+EEW+  
Sbjct: 196 FSKIASGAAGISYRRKEFVKIMPNYVQHGGLRSYGVDVELASKTGSNLGAGRLVEEWERE 255

Query: 191 NERCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDS 250
            ERCPGTKN+AG+VGIIVR+PSKPPPK+KL+A+QGKLEIDQEEVG DPNGTEFVI TKDS
Sbjct: 256 YERCPGTKNVAGSVGIIVRNPSKPPPKLKLIAKQGKLEIDQEEVGTDPNGTEFVIATKDS 315

Query: 251 PELDASSLVVGRVLEGMEVAEKIGEVKTVQENTGSPYFRVAKLIGDKRAVVAERGFNRPY 310
           PELDAS+LV+GRV+ GMEV ++IG VKTVQENTGSPYFRVAKLIGDKRAVVAERGFNRPY
Sbjct: 316 PELDASTLVIGRVIGGMEVVQRIGLVKTVQENTGSPYFRVAKLIGDKRAVVAERGFNRPY 375

Query: 311 SKVLVTNCGLME 322
           SKV+VTNCGLME
Sbjct: 376 SKVIVTNCGLME 387

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449439375|ref|XP_004137461.1| PREDICTED: peptidyl-prolyl cis-trans isomerase CYP20-2, chloroplastic-like [Cucumis sativus]

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 198/295 (67%), Positives = 235/295 (79%), Gaps = 1/295 (0%)

Query: 29  NFPTSRSLPSLKQTCNLSRRELTLCGNSSLLLLWGSLVLEPFNLS-RARADELPNADKNE 87
           N PTS   P +KQ C +SRR LT+  NS LLLL+ S + +PF +S +A  +E        
Sbjct: 25  NIPTSSKFPFIKQCCKISRRNLTIGTNSLLLLLFNSQIQDPFLMSSKAEVEEEELQSPKN 84

Query: 88  QEQNCANKDPTKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKE 147
            +  C  K PTKR FLDISIDG  AGRI+IGLYG+ +PAG ARFS+LVSG AGISYRRK+
Sbjct: 85  DDFLCTGKIPTKRAFLDISIDGVPAGRIIIGLYGNDSPAGVARFSNLVSGAAGISYRRKD 144

Query: 148 FIKIMPNYVQHGGVRSYGVDAELARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGII 207
           F+KI  NYVQH GVRSYGVD ELA+R+G+ L +E L +EW+  NE+C GTKNLA TVGII
Sbjct: 145 FVKITSNYVQHSGVRSYGVDFELAKRNGNELVSETLKDEWERANEKCSGTKNLASTVGII 204

Query: 208 VRDPSKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGM 267
           VRDP KPPPK+KLVAR+GKLE+DQE+VG +PNGTEF I  KDSPELD S+LV+G VL+GM
Sbjct: 205 VRDPLKPPPKLKLVARKGKLEVDQEQVGTEPNGTEFTISVKDSPELDDSALVIGIVLDGM 264

Query: 268 EVAEKIGEVKTVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNCGLME 322
           EV EKI +VKTV++NT SPYFRVAK+IGDKRAVVAERGFNRPYSKV+VTNCGL+E
Sbjct: 265 EVVEKIAQVKTVKDNTTSPYFRVAKIIGDKRAVVAERGFNRPYSKVIVTNCGLLE 319

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449486867|ref|XP_004157426.1| PREDICTED: peptidyl-prolyl cis-trans isomerase CYP20-2, chloroplastic-like [Cucumis sativus]

 Score =  344 bits (883), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 173/231 (74%), Positives = 200/231 (86%)

Query: 92  CANKDPTKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKI 151
           C  K PTKR FLDISIDG  AGRI+IGLYG+ +PAG ARFS+LVSG AGISYRRK+F+KI
Sbjct: 22  CTGKIPTKRAFLDISIDGVPAGRIIIGLYGNDSPAGVARFSNLVSGAAGISYRRKDFVKI 81

Query: 152 MPNYVQHGGVRSYGVDAELARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGIIVRDP 211
             NYVQH GVRSYGVD ELA+R+G+ L +E L +EW+  NE+C GTKNLA TVGIIVRDP
Sbjct: 82  TSNYVQHSGVRSYGVDFELAKRNGNELVSETLKDEWERANEKCSGTKNLASTVGIIVRDP 141

Query: 212 SKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAE 271
            KPPPK+KLVAR+GKLE+DQE+VG +PNGTEF I  KDSPELD S+LV+G VL+GMEV E
Sbjct: 142 LKPPPKLKLVARKGKLEVDQEQVGTEPNGTEFTISVKDSPELDDSALVIGIVLDGMEVVE 201

Query: 272 KIGEVKTVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNCGLME 322
           KI +VKTV++NT SPYFRVAK+IGDKRAVVAERGFNRPYSKV+VTNCGL+E
Sbjct: 202 KIAQVKTVKDNTTSPYFRVAKIIGDKRAVVAERGFNRPYSKVIVTNCGLLE 252

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18410525|ref|NP_565079.1| cyclophilin-like peptidyl-prolyl cis-trans isomerase-like protein [Arabidopsis thaliana] gi|332197424|gb|AEE35545.1| cyclophilin-like peptidyl-prolyl cis-trans isomerase-like protein [Arabidopsis thaliana]

 Score =  333 bits (854), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 183/323 (56%), Positives = 229/323 (70%), Gaps = 11/323 (3%)

Query: 1   MLQ-SQKILNSSPQILPPTPSPKIHPLVQNFPTSRSLPSLKQTCNLSRRELTLCGNSSLL 59
           M+Q + K+L+ S + LP    P  H       T  + PSL++ C LSRR L+      LL
Sbjct: 1   MMQPNAKLLSPSAKFLPSPIEPPQH---NRRTTVGAPPSLERNCKLSRRNLSKSSLLLLL 57

Query: 60  LLWGSLVLEPFNLSRARADELPNADKNEQEQNCANKDPTKRVFLDISIDGKSAGRIVIGL 119
               +L     + S+A+AD + N +      NC N+ PTK+ F+D+SIDG+  GRI+IGL
Sbjct: 58  TTQTTLTPL-LDFSKAQADTIANPNLT----NCENRIPTKKAFIDVSIDGEPIGRIIIGL 112

Query: 120 YGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHGGVRSYGVDAELARRSGSNLE 179
           YGD  PAG ARFSS+VSG AGI+YRRK+F+KIMP YVQHGG+RSYGVDAE A  +  +L+
Sbjct: 113 YGDDVPAGTARFSSIVSGKAGITYRRKDFVKIMPGYVQHGGIRSYGVDAERATAAVGSLQ 172

Query: 180 TERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQGKLEIDQEEVGKDPN 239
              L+EEW+          N AG+VGI+VRDPSKPPPK KLVAR GKL +++E +   PN
Sbjct: 173 N--LIEEWERGKRGEICNVNKAGSVGIVVRDPSKPPPKTKLVARNGKLVVEEEVIAVGPN 230

Query: 240 GTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKIGEVKTVQENTGSPYFRVAKLIGDKRA 299
           GTEFVI   DSPEL+ S LV+G+VLEGM V EK+ EVKTV++NT SPYFRVAK+IGDKRA
Sbjct: 231 GTEFVITAVDSPELEDSVLVIGKVLEGMGVVEKMREVKTVRDNTSSPYFRVAKVIGDKRA 290

Query: 300 VVAERGFNRPYSKVLVTNCGLME 322
           VVAERGFNRPYSKV+VTNCGL+E
Sbjct: 291 VVAERGFNRPYSKVVVTNCGLIE 313

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	322
TAIR|locus:2031546	317	AT1G74070 [Arabidopsis thalian	0.956	0.971	0.565	1.3e-86
TAIR|locus:2045663	201	CYP5 "cyclophilin 5" [Arabidop	0.220	0.353	0.384	1.2e-17
DICTYBASE|DDB_G0269120	197	cypB "cyclophilin B" [Dictyost	0.239	0.390	0.409	1.3e-16
ZFIN|ZDB-GENE-030131-7459	164	ppiab "peptidylprolyl isomeras	0.189	0.371	0.426	1.6e-15
ZFIN|ZDB-GENE-040426-1955	216	ppib "peptidylprolyl isomerase	0.232	0.347	0.350	2e-15
UNIPROTKB|F1NV93	207	PPIB "Peptidyl-prolyl cis-tran	0.310	0.483	0.333	9.4e-15
UNIPROTKB|F1P4M4	223	PPIB "Peptidyl-prolyl cis-tran	0.310	0.448	0.333	1.8e-14
UNIPROTKB|P24367	207	PPIB "Peptidyl-prolyl cis-tran	0.245	0.381	0.283	6.8e-14
TAIR|locus:2178863	204	ROC7 "rotamase CYP 7" [Arabido	0.220	0.348	0.371	6.8e-14
MGI|MGI:97750	216	Ppib "peptidylprolyl isomerase	0.217	0.324	0.319	1.1e-13

TAIR|locus:2031546 AT1G74070 [Arabidopsis thaliana (taxid:3702)]

 Score = 866 (309.9 bits), Expect = 1.3e-86, P = 1.3e-86
 Identities = 185/327 (56%), Positives = 229/327 (70%)

Query:     1 MLQ-SQKILNSSPQILPPTPSPKIHPLVQNFPTSRSLP-SLKQTCNLSRREXXXXXXXXX 58
             M+Q + K+L+ S + LP   SP I P   N  T+   P SL++ C LSRR          
Sbjct:     1 MMQPNAKLLSPSAKFLP---SP-IEPPQHNRRTTVGAPPSLERNCKLSRRNLSKSSLLLL 56

Query:    59 XXXXXXXXXEPF-NLSRARADELPNADKNEQEQNCANKDPTKRVFLDISIDGKSAGRIVI 117
                       P  + S+A+AD + N +      NC N+ PTK+ F+D+SIDG+  GRI+I
Sbjct:    57 LTTQTTLT--PLLDFSKAQADTIANPNLT----NCENRIPTKKAFIDVSIDGEPIGRIII 110

Query:   118 GLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHGGVRSYGVDAELARRSGSN 177
             GLYGD  PAG ARFSS+VSG AGI+YRRK+F+KIMP YVQHGG+RSYGVDAE A  +  +
Sbjct:   111 GLYGDDVPAGTARFSSIVSGKAGITYRRKDFVKIMPGYVQHGGIRSYGVDAERATAAVGS 170

Query:   178 LETERLMEEWKANN--ERCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQGKLEIDQEEVG 235
             L+   L+EEW+     E C    N AG+VGI+VRDPSKPPPK KLVAR GKL +++E + 
Sbjct:   171 LQN--LIEEWERGKRGEIC--NVNKAGSVGIVVRDPSKPPPKTKLVARNGKLVVEEEVIA 226

Query:   236 KDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKIGEVKTVQENTGSPYFRVAKLIG 295
               PNGTEFVI   DSPEL+ S LV+G+VLEGM V EK+ EVKTV++NT SPYFRVAK+IG
Sbjct:   227 VGPNGTEFVITAVDSPELEDSVLVIGKVLEGMGVVEKMREVKTVRDNTSSPYFRVAKVIG 286

Query:   296 DKRAVVAERGFNRPYSKVLVTNCGLME 322
             DKRAVVAERGFNRPYSKV+VTNCGL+E
Sbjct:   287 DKRAVVAERGFNRPYSKVVVTNCGLIE 313

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA;ISS

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009543 "chloroplast thylakoid lumen" evidence=ISS

GO:0016556 "mRNA modification" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

TAIR|locus:2045663 CYP5 "cyclophilin 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 148 (57.2 bits), Expect = 1.2e-17, Sum P(2) = 1.2e-17
 Identities = 30/78 (38%), Positives = 49/78 (62%)

Query:    95 KDPTKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGIS-------YRRKE 147
             K+ T +V+ D+ IDGKSAGR+VIGL+G + P  A  F +L +G  G+        Y+  +
Sbjct:    28 KEVTHKVYFDVEIDGKSAGRVVIGLFGKAVPKTAENFRALCTGEKGVGKSGKPLHYKGSK 87

Query:   148 FIKIMPNYVQHGGVRSYG 165
             F +I+P+++  GG  ++G
Sbjct:    88 FHRIIPSFMIQGGDFTHG 105

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA;ISS;IDA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005771 "multivesicular body" evidence=IDA

GO:0005795 "Golgi stack" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0006623 "protein targeting to vacuole" evidence=RCA

DICTYBASE|DDB_G0269120 cypB "cyclophilin B" [Dictyostelium discoideum (taxid:44689)]

 Score = 147 (56.8 bits), Expect = 1.3e-16, Sum P(2) = 1.3e-16
 Identities = 36/88 (40%), Positives = 47/88 (53%)

Query:    93 ANKDP--TKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGIS-------Y 143
             A KDP  T +VF DI ID K AGRIV GLYG + P     F +L +G  G+        Y
Sbjct:    22 AGKDPKITNKVFFDIEIDNKPAGRIVFGLYGKTVPKTVENFRALCTGEKGLGTSGKPLHY 81

Query:   144 RRKEFIKIMPNYVQHGG--VRSYGVDAE 169
             +  +F +I+PN++  GG   R  G   E
Sbjct:    82 KDSKFHRIIPNFMIQGGDFTRGDGTGGE 109

GO:0006457 "protein folding" evidence=IEA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=IEA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IEA

GO:0042277 "peptide binding" evidence=IEA

GO:0016853 "isomerase activity" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

ZFIN|ZDB-GENE-030131-7459 ppiab "peptidylprolyl isomerase Ab (cyclophilin A)" [Danio rerio (taxid:7955)]

 Score = 133 (51.9 bits), Expect = 1.6e-15, Sum P(2) = 1.6e-15
 Identities = 26/61 (42%), Positives = 37/61 (60%)

Query:   100 RVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHG 159
             +VF DI+IDGK AGRIV+ L  D  P  A  F +L +G  G  Y+   F +++P ++  G
Sbjct:     5 KVFFDITIDGKEAGRIVMELRADVVPKTAENFRALCTGEKGFGYKGSGFHRVIPQFMCQG 64

Query:   160 G 160
             G
Sbjct:    65 G 65

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0001666 "response to hypoxia" evidence=IDA

GO:0016853 "isomerase activity" evidence=IEA

ZFIN|ZDB-GENE-040426-1955 ppib "peptidylprolyl isomerase B (cyclophilin B)" [Danio rerio (taxid:7955)]

 Score = 129 (50.5 bits), Expect = 2.0e-15, Sum P(2) = 2.0e-15
 Identities = 27/77 (35%), Positives = 43/77 (55%)

Query:    86 NEQEQNCANKDP--TKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISY 143
             +E E +   K P  T +V+ DI I  + AGRIVIGL+G + P     F  L +G  G  Y
Sbjct:    29 SETEADEKKKGPKVTAKVYFDIKIGDEDAGRIVIGLFGKTVPKTTENFLQLATGEKGFGY 88

Query:   144 RRKEFIKIMPNYVQHGG 160
             +  +F +++ +++  GG
Sbjct:    89 KGSKFHRVIKDFMIQGG 105

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0016853 "isomerase activity" evidence=IEA

UNIPROTKB|F1NV93 PPIB "Peptidyl-prolyl cis-trans isomerase" [Gallus gallus (taxid:9031)]

 Score = 122 (48.0 bits), Expect = 9.4e-15, Sum P(2) = 9.4e-15
 Identities = 35/105 (33%), Positives = 48/105 (45%)

Query:   202 GTVGIIVRDPSKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVG 261
             GT G  +     P    KL    G   +     GKD NG++F I T  +P LD   +V G
Sbjct:   103 GTGGKSIYGDRFPDENFKL-KHYGPGWVSMANAGKDTNGSQFFITTVKTPWLDGKHVVFG 161

Query:   262 RVLEGMEVAEKIGEVKTVQENTGSPYFRVAKLIGDKRAVVAERGF 306
             +VLEGM+V  K+   KT  ++   P   V   I D   +  E+ F
Sbjct:   162 KVLEGMDVVRKVENTKT--DSRDKPLKDVT--IADCGTIEVEKPF 202

GO:0006457 "protein folding" evidence=IEA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

UNIPROTKB|F1P4M4 PPIB "Peptidyl-prolyl cis-trans isomerase" [Gallus gallus (taxid:9031)]

 Score = 122 (48.0 bits), Expect = 1.8e-14, Sum P(2) = 1.8e-14
 Identities = 35/105 (33%), Positives = 48/105 (45%)

Query:   202 GTVGIIVRDPSKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVG 261
             GT G  +     P    KL    G   +     GKD NG++F I T  +P LD   +V G
Sbjct:   119 GTGGKSIYGDRFPDENFKL-KHYGPGWVSMANAGKDTNGSQFFITTVKTPWLDGKHVVFG 177

Query:   262 RVLEGMEVAEKIGEVKTVQENTGSPYFRVAKLIGDKRAVVAERGF 306
             +VLEGM+V  K+   KT  ++   P   V   I D   +  E+ F
Sbjct:   178 KVLEGMDVVRKVENTKT--DSRDKPLKDVT--IADCGTIEVEKPF 218

GO:0006457 "protein folding" evidence=IEA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

UNIPROTKB|P24367 PPIB "Peptidyl-prolyl cis-trans isomerase B" [Gallus gallus (taxid:9031)]

 Score = 121 (47.7 bits), Expect = 6.8e-14, Sum P(2) = 6.8e-14
 Identities = 23/81 (28%), Positives = 45/81 (55%)

Query:    80 LPNADKNEQEQNCANKDPTKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTA 139
             LP A + ++ +       T +VF D+ +  + AGR+VIGL+G + P     F +L +G  
Sbjct:    18 LPAASRADERKK--GPKVTAKVFFDLRVGEEDAGRVVIGLFGKTVPKTVENFVALATGEK 75

Query:   140 GISYRRKEFIKIMPNYVQHGG 160
             G  ++  +F +++ +++  GG
Sbjct:    76 GFGFKGSKFHRVIKDFMIQGG 96

GO:0006457 "protein folding" evidence=IEA

GO:0042277 "peptide binding" evidence=IEA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

GO:0005788 "endoplasmic reticulum lumen" evidence=IEA

TAIR|locus:2178863 ROC7 "rotamase CYP 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 139 (54.0 bits), Expect = 6.8e-14, Sum P(2) = 6.8e-14
 Identities = 29/78 (37%), Positives = 47/78 (60%)

Query:    95 KDPTKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGIS-------YRRKE 147
             K+ T +V+ D+ IDGK+AGRIV+GL+G + P     F +L +G  GI        Y+   
Sbjct:    31 KEITHKVYFDVEIDGKAAGRIVMGLFGKTVPKTVENFRALCTGEKGIGKNGKALHYKGSS 90

Query:   148 FIKIMPNYVQHGGVRSYG 165
             F +I+P+++  GG  ++G
Sbjct:    91 FHRIIPSFMLQGGDFTHG 108

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA;ISS

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0048364 "root development" evidence=IMP

GO:0009507 "chloroplast" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0005783 "endoplasmic reticulum" evidence=IDA

MGI|MGI:97750 Ppib "peptidylprolyl isomerase B" [Mus musculus (taxid:10090)]

 Score = 120 (47.3 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
 Identities = 23/72 (31%), Positives = 40/72 (55%)

Query:    91 NCANKDP--TKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEF 148
             N   K P  T +V+ D+ I  +S GR+V GL+G + P     F +L +G  G  Y+  +F
Sbjct:    34 NDKKKGPKVTVKVYFDLQIGDESVGRVVFGLFGKTVPKTVDNFVALATGEKGFGYKNSKF 93

Query:   149 IKIMPNYVQHGG 160
              +++ +++  GG
Sbjct:    94 HRVIKDFMIQGG 105

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0016853 "isomerase activity" evidence=IEA

GO:0042277 "peptide binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	5.2.1	LOW CONFIDENCE prediction!
4th Layer	5.2.1.8	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00120497 hypothetical protein (328 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	322
cd00317	146	cd00317, cyclophilin, cyclophilin: cyclophilin-typ	7e-19
pfam00160	144	pfam00160, Pro_isomerase, Cyclophilin type peptidy	1e-17
COG0652	158	COG0652, PpiB, Peptidyl-prolyl cis-trans isomerase	8e-14
PTZ00060	183	PTZ00060, PTZ00060, cyclophilin; Provisional	7e-12
cd01926	164	cd01926, cyclophilin_ABH_like, cyclophilin_ABH_lik	2e-09
PTZ00221	249	PTZ00221, PTZ00221, cyclophilin; Provisional	2e-08
cd01926	164	cd01926, cyclophilin_ABH_like, cyclophilin_ABH_lik	1e-07
PLN03149	186	PLN03149, PLN03149, peptidyl-prolyl isomerase H (c	1e-06
cd01927	148	cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclo	3e-05
cd01920	155	cd01920, cyclophilin_EcCYP_like, cyclophilin_EcCYP	1e-04
PRK10903	190	PRK10903, PRK10903, peptidyl-prolyl cis-trans isom	3e-04
cd01922	146	cd01922, cyclophilin_SpCYP2_like, cyclophilin_SpCY	4e-04
cd01921	166	cd01921, cyclophilin_RRM, cyclophilin_RRM: cycloph	9e-04

>gnl|CDD|238194 cd00317, cyclophilin, cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases

 Score = 81.2 bits (201), Expect = 7e-19
 Identities = 48/178 (26%), Positives = 67/178 (37%), Gaps = 47/178 (26%)

Query: 102 FLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPN-YVQHGG 160
            LD +      GRIVI LYGD AP     F SL     G  Y    F +++P   +Q G 
Sbjct: 1   TLDTTK-----GRIVIELYGDEAPKTVENFLSLA---RGGFYDGTTFHRVIPGFMIQGGD 52

Query: 161 VRSYGVDAELARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIKL 220
               G         G +    +  +E   N        +  GT+ +              
Sbjct: 53  PTGTG--------GGGSGPGYKFPDE---NFPL--KYHHRRGTLSM-------------- 85

Query: 221 VARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKIGEVKT 278
            A  G           + NG++F I T  +P LD    V G+V+EGM+V +KI    T
Sbjct: 86  -ANAGP----------NTNGSQFFITTAPTPHLDGKHTVFGKVVEGMDVVDKIERGDT 132

This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug cyclosporin (CsA). Immunosuppression in vertebrates is believed to be the result of the cyclophilin A-cyclosporin protein drug complex binding to and inhibiting the protein-phosphatase calcineurin. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. Cyclophilins are a diverse family in terms of function and have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. This group contains human cyclophilin 40, a co-chaperone of the hsp90 chaperone system; human cyclophilin A, a chaperone in the HIV-1 infectious process and; human cyclophilin H, a component of the U4/U6 snRNP, whose isomerization or chaperoning activities may play a role in RNA splicing. . Length = 146

>gnl|CDD|215759 pfam00160, Pro_isomerase, Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

 Score = 78.1 bits (193), Expect = 1e-17
 Identities = 51/178 (28%), Positives = 73/178 (41%), Gaps = 49/178 (27%)

Query: 102 FLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNY-VQHGG 160
           FLDI+ +    GRIVI L+GD AP     F SL     G  Y    F +++P + +Q G 
Sbjct: 1   FLDITTN---LGRIVIELFGDEAPKTVENFLSLC--KKG-FYDGTIFHRVIPGFMIQGGD 54

Query: 161 VRSYGVDAELARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIKL 220
               G   + +                   +E     K+  GT+                
Sbjct: 55  PTGPGTGGKRSIP-----------------DEFVSKLKHKRGTLS--------------- 82

Query: 221 VARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKIGEVKT 278
           +AR G           +  G++F I   D+P LD    V GRV+EGM+V EKI +V+T
Sbjct: 83  MARSGP----------NSAGSQFFITLGDAPHLDGGYTVFGRVVEGMDVVEKIEKVET 130

The peptidyl-prolyl cis-trans isomerases, also known as cyclophilins, share this domain of about 109 amino acids. Cyclophilins have been found in all organisms studied so far and catalyze peptidyl-prolyl isomerisation during which the peptide bond preceding proline (the peptidyl-prolyl bond) is stabilised in the cis conformation. Mammalian cyclophilin A (CypA) is a major cellular target for the immunosuppressive drug cyclosporin A (CsA). Other roles for cyclophilins may include chaperone and cell signalling function. Length = 144

>gnl|CDD|223725 COG0652, PpiB, Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]

 Score = 67.6 bits (166), Expect = 8e-14
 Identities = 48/177 (27%), Positives = 68/177 (38%), Gaps = 39/177 (22%)

Query: 107 IDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHGGVRSYGV 166
           I   + G I I LY D AP   A F  LV    G  Y    F +++P ++  GG  + G 
Sbjct: 3   ILETNKGDITIELYPDKAPKTVANFLQLV--KEG-FYDGTIFHRVIPGFMIQGGDPTGGD 59

Query: 167 DAELARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQGK 226
                   G         +E  A N    G ++  GT+ +               AR G 
Sbjct: 60  -----GTGG---PGPPFKDENFALN----GDRHKRGTLSM---------------ARAGD 92

Query: 227 LEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKIGEVKTVQENT 283
                     + NG++F I   D+P LD    V G+V+EGM+V +KI    T     
Sbjct: 93  ---------PNSNGSQFFITVVDNPFLDGKYTVFGQVVEGMDVVDKIKNGDTDDSGY 140

Length = 158

>gnl|CDD|240249 PTZ00060, PTZ00060, cyclophilin; Provisional

 Score = 62.9 bits (153), Expect = 7e-12
 Identities = 56/232 (24%), Positives = 90/232 (38%), Gaps = 76/232 (32%)

Query: 100 RVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTA------GISYRRKEFIKIMP 153
           +VF DISID   AGRIV  L+ D  P  A  F +L  G         + Y+   F +I+P
Sbjct: 17  KVFFDISIDNAPAGRIVFELFSDVTPKTAENFRALCIGDKVGSSGKNLHYKGSIFHRIIP 76

Query: 154 NYVQHGGVRSYGVDAELARRSGSNLET----ERLMEEWKANNERCPGTKNLAGTVGIIVR 209
            ++  GG        ++   +G+  E+    +   E +K  +++ PG  ++A        
Sbjct: 77  QFMCQGG--------DITNHNGTGGESIYGRKFTDENFKLKHDQ-PGLLSMANA------ 121

Query: 210 DPSKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEV 269
                                    G + NG++F I T   P LD   +V G+V+EGMEV
Sbjct: 122 -------------------------GPNTNGSQFFITTVPCPWLDGKHVVFGKVIEGMEV 156

Query: 270 AEKIGEVKTVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNCGLM 321
              +  ++     +G                        P   V+VT+CG +
Sbjct: 157 ---VRAMEKEGTQSG-----------------------YPKKPVVVTDCGEL 182

Length = 183

>gnl|CDD|238907 cd01926, cyclophilin_ABH_like, cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain

 Score = 55.0 bits (133), Expect = 2e-09
 Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 5/66 (7%)

Query: 100 RVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGIS-----YRRKEFIKIMPN 154
           +VF DI+I G+ AGRIV+ L+ D  P  A  F +L +G  G       Y+   F +++P+
Sbjct: 2   KVFFDITIGGEPAGRIVMELFADVVPKTAENFRALCTGEKGKGGKPFGYKGSTFHRVIPD 61

Query: 155 YVQHGG 160
           ++  GG
Sbjct: 62  FMIQGG 67

This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase active site. Cyp-3. S. cerevisiae Cpr1 interacts with the Rpd3 - Sin3 complex and in addition is a component of the Set3 complex. S. cerevisiae Cpr1 has also been shown to have a role in Zpr1p nuclear transport. Human cyclophilin H associates with the [U4/U6.U5] tri-snRNP particles of the splicesome. Length = 164

>gnl|CDD|140248 PTZ00221, PTZ00221, cyclophilin; Provisional

 Score = 54.1 bits (130), Expect = 2e-08
 Identities = 43/186 (23%), Positives = 68/186 (36%), Gaps = 51/186 (27%)

Query: 98  TKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGIS----------YRRKE 147
           + R FLDISI    AGR+V  L+ D  P     F +L++G+ GI           Y    
Sbjct: 52  SCRAFLDISIGDVLAGRLVFELFEDVVPETVENFRALITGSCGIDTNTGVKLDYLYTPVH 111

Query: 148 FIKIMPNYVQHGGVRSYGVDAELARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGII 207
            +    N +  G + S+ V       +G+ +  E                       G  
Sbjct: 112 HVDRNNNIIVLGELDSFNV-----SSTGTPIADE-----------------------GYR 143

Query: 208 VRDPSKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGM 267
            R   +           G L +  E  G   +G+ F I    SP LD   +V G+ ++ +
Sbjct: 144 HRHTER-----------GLLTMISE--GPHTSGSVFGITLGPSPSLDFKQVVFGKAVDDL 190

Query: 268 EVAEKI 273
            + EK+
Sbjct: 191 SLLEKL 196

Length = 249

>gnl|CDD|238907 cd01926, cyclophilin_ABH_like, cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain

 Score = 50.7 bits (122), Expect = 1e-07
 Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 26/85 (30%)

Query: 235 GKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKIGEVKTVQENTGSPYFRVAKLI 294
           G + NG++F I T  +P LD   +V G+V+EGM+V +KI       EN GS         
Sbjct: 106 GPNTNGSQFFITTVKTPWLDGKHVVFGKVVEGMDVVKKI-------ENVGS--------- 149

Query: 295 GDKRAVVAERGFNRPYSKVLVTNCG 319
                     G  +P  KV++ +CG
Sbjct: 150 ----------GNGKPKKKVVIADCG 164

This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase active site. Cyp-3. S. cerevisiae Cpr1 interacts with the Rpd3 - Sin3 complex and in addition is a component of the Set3 complex. S. cerevisiae Cpr1 has also been shown to have a role in Zpr1p nuclear transport. Human cyclophilin H associates with the [U4/U6.U5] tri-snRNP particles of the splicesome. Length = 164

>gnl|CDD|178694 PLN03149, PLN03149, peptidyl-prolyl isomerase H (cyclophilin H); Provisional

 Score = 47.5 bits (113), Expect = 1e-06
 Identities = 49/188 (26%), Positives = 72/188 (38%), Gaps = 42/188 (22%)

Query: 101 VFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSG---TAG--ISYRRKEFIKIMPNY 155
           VF D++I G  AGRI + L+ D AP  A  F    +G    AG    Y+  +F +++ ++
Sbjct: 21  VFFDVTIGGIPAGRIKMELFADIAPKTAENFRQFCTGEFRKAGLPQGYKGCQFHRVIKDF 80

Query: 156 VQHGGVRSYGVDAELARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPP 215
           +  GG    G         GS  E E  + +        PG  ++A +            
Sbjct: 81  MIQGGDFLKGDGTGCVSIYGSKFEDENFIAKHTG-----PGLLSMANS------------ 123

Query: 216 PKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVL-EGMEVAEKIG 274
                              G + NG +F I       LD   +V GRVL +G+ V  KI 
Sbjct: 124 -------------------GPNTNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIE 164

Query: 275 EVKTVQEN 282
            V T   N
Sbjct: 165 NVATGPNN 172

Length = 186

>gnl|CDD|238908 cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain

 Score = 42.8 bits (101), Expect = 3e-05
 Identities = 20/44 (45%), Positives = 29/44 (65%)

Query: 235 GKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKIGEVKT 278
           G + NG++F I T  +P LD    V GRV++GM+V ++I  VKT
Sbjct: 90  GPNTNGSQFFITTVATPWLDNKHTVFGRVVKGMDVVQRIENVKT 133

This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known. Length = 148

>gnl|CDD|238901 cd01920, cyclophilin_EcCYP_like, cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E

 Score = 41.7 bits (98), Expect = 1e-04
 Identities = 45/174 (25%), Positives = 64/174 (36%), Gaps = 48/174 (27%)

Query: 111 SAGRIVIGLYGDSAPAGAARF-SSLVSGTAGISYRRKEFIKIMPNYVQHGGVRSYGVDAE 169
           S G IV+ LY D AP     F + +  G     Y    F +++  +V  GG    G   +
Sbjct: 5   SLGDIVVELYDDKAPITVENFLAYVRKG----FYDNTIFHRVISGFVIQGG----GFTPD 56

Query: 170 LARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQGKLEI 229
           LA++                 NE   G  N  GT+ +               AR      
Sbjct: 57  LAQKETLK----------PIKNEAGNGLSNTRGTIAM---------------ARTN---- 87

Query: 230 DQEEVGKDPNGTEFVIVTKDSPELDASS-----LVVGRVLEGMEVAEKIGEVKT 278
                  D   ++F I  KD+  LD  +      V G V EGM+V +KI  V+T
Sbjct: 88  -----APDSATSQFFINLKDNASLDYQNEQWGYTVFGEVTEGMDVVDKIAGVET 136

coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding. Length = 155

>gnl|CDD|182824 PRK10903, PRK10903, peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional

 Score = 41.0 bits (96), Expect = 3e-04
 Identities = 47/186 (25%), Positives = 71/186 (38%), Gaps = 51/186 (27%)

Query: 111 SAGRIVIGLYGDSAPAGAARFSSLV-SGTAGISYRRKEFIKIMPNYVQHGGVRSYGVDAE 169
           SAG I + L    AP     F   V SG     Y    F +++P ++  GG    G   +
Sbjct: 36  SAGNIELELNSQKAPVSVKNFVDYVNSGF----YNNTTFHRVIPGFMIQGG----GFTEQ 87

Query: 170 LARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQGKLEI 229
           + ++  +              NE   G +N  GT+ +               AR      
Sbjct: 88  MQQKKPNP----------PIKNEADNGLRNTRGTIAM---------------ARTAD--- 119

Query: 230 DQEEVGKDPNGTEFVIVTKDSPELDASS-----LVVGRVLEGMEVAEKIGEVKTVQENTG 284
                 KD   ++F I   D+  LD         V G+V++GM+VA+KI +V T   + G
Sbjct: 120 ------KDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPT--HDVG 171

Query: 285 SPYFRV 290
            PY  V
Sbjct: 172 -PYQNV 176

Length = 190

>gnl|CDD|238903 cd01922, cyclophilin_SpCYP2_like, cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2

 Score = 39.8 bits (93), Expect = 4e-04
 Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 3/56 (5%)

Query: 235 GKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKIGEVKTVQENTGSPYFRV 290
           G + NG++F I    +P LD    + GRV +GM+V E + EV+T    T  P   V
Sbjct: 90  GPNTNGSQFFITLAPTPWLDGKHTIFGRVSKGMKVIENMVEVQT---QTDRPIDEV 142

These proteins bind their respective SNW chromatin binding protein in autologous systems, in a CsA independent manner indicating interaction with a surface outside the PPIase active site. SNW proteins play a basic and broad range role in signaling. Length = 146

>gnl|CDD|238902 cd01921, cyclophilin_RRM, cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM)

 Score = 39.2 bits (92), Expect = 9e-04
 Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 7/77 (9%)

Query: 234 VGKDPNGTEFVI-VTKDSPELDASSLVVGRVLEGMEVAEKIGEVKTVQENTGSPYFRVAK 292
            G + NG++F I + ++   LD    V G+V+EG +V EKI +   + ++ G P     K
Sbjct: 96  AGDNLNGSQFYITLGENLDYLDGKHTVFGQVVEGFDVLEKIND--AIVDDDGRPL----K 149

Query: 293 LIGDKRAVVAERGFNRP 309
            I  K   + +  F  P
Sbjct: 150 DIRIKHTHILDDPFPDP 166

This subfamily of the cyclophilin domain family contains a number of eukaryotic cyclophilins having the RRM domain including the nuclear proteins: human hCyP-57, Arabidopsis thaliana AtCYP59, Caenorhabditis elegans CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241 protein has been shown to have a role in cell morphogenesis. Length = 166

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	322
KOG0546	372	consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos	100.0
KOG0880	217	consensus Peptidyl-prolyl cis-trans isomerase [Pos	100.0
KOG0879	177	consensus U-snRNP-associated cyclophilin type pept	100.0
PTZ00221	249	cyclophilin; Provisional	100.0
cd01926	164	cyclophilin_ABH_like cyclophilin_ABH_like: Cycloph	100.0
PLN03149	186	peptidyl-prolyl isomerase H (cyclophilin H); Provi	100.0
PTZ00060	183	cyclophilin; Provisional	100.0
KOG0111	298	consensus Cyclophilin-type peptidyl-prolyl cis-tra	100.0
COG0652	158	PpiB Peptidyl-prolyl cis-trans isomerase (rotamase	100.0
KOG0881	164	consensus Cyclophilin type peptidyl-prolyl cis-tra	100.0
cd01923	159	cyclophilin_RING cyclophilin_RING: cyclophilin-typ	100.0
cd01928	153	Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like. Pro	100.0
PRK10903	190	peptidyl-prolyl cis-trans isomerase A (rotamase A)	100.0
cd01927	148	cyclophilin_WD40 cyclophilin_WD40: cyclophilin-typ	100.0
cd01921	166	cyclophilin_RRM cyclophilin_RRM: cyclophilin-type	100.0
cd01922	146	cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: c	100.0
cd01925	171	cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like:	100.0
PRK10791	164	peptidyl-prolyl cis-trans isomerase B (rotamase B)	100.0
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	100.0
cd01920	155	cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyc	100.0
KOG0883	518	consensus Cyclophilin type, U box-containing pepti	100.0
KOG0884	161	consensus Similar to cyclophilin-type peptidyl-pro	100.0
PF00160	155	Pro_isomerase: Cyclophilin type peptidyl-prolyl ci	100.0
KOG0865	167	consensus Cyclophilin type peptidyl-prolyl cis-tra	100.0
cd00317	146	cyclophilin cyclophilin: cyclophilin-type peptidyl	100.0
cd01924	176	cyclophilin_TLP40_like cyclophilin_TLP40_like: cyc	100.0
KOG0885	439	consensus Peptidyl-prolyl cis-trans isomerase [Pos	99.97
KOG0415	479	consensus Predicted peptidyl prolyl cis-trans isom	99.96
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	96.74
TIGR03268	503	methan_mark_3 putative methanogenesis marker prote	94.61
PRK00969	508	hypothetical protein; Provisional	94.39
TIGR03268	503	methan_mark_3 putative methanogenesis marker prote	94.25
PRK00969	508	hypothetical protein; Provisional	92.77
COG4070	512	Predicted peptidyl-prolyl cis-trans isomerase (rot	92.69
COG4070	512	Predicted peptidyl-prolyl cis-trans isomerase (rot	91.65
PF12903	147	DUF3830: Protein of unknown function (DUF3830); In	80.88

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.5e-52  Score=393.56  Aligned_cols=164  Identities=32%  Similarity=0.616  Sum_probs=151.9

Q ss_pred             CCceEEEEEEeCCeeeeeEEEEecCCCCChhHHHHHHHhcCCCc--------ccccCcEEEEeccCeeEeeCccccCccc
Q 020718           97 PTKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAG--------ISYRRKEFIKIMPNYVQHGGVRSYGVDA  168 (322)
Q Consensus        97 ~~~~v~~di~i~g~~~GrIvIeL~~d~aP~tv~nF~~L~~~~~g--------~~Y~g~~f~Rvi~gfviQgGd~~~~~~~  168 (322)
                      .+++|||||+|||+++||||||||.|.+|+||+||+.||+|.+|        +.|+|+.||||+++|||||||++.+   
T Consensus         7 ~~pr~ffDISI~ge~~GRIvfeLf~dv~PKTaENFraLCtGE~G~~~~~gk~L~YKG~~FHRViK~FMiQgGDfs~g---   83 (372)
T KOG0546|consen    7 TNPRVFFDISIGGEPAGRIVFELFNDVVPKTAENFRALCTGEKGGGLTTGKPLHYKGSRFHRVIKNFMIQGGDFSEG---   83 (372)
T ss_pred             CCceEEEEEEeCCcccceEEEEeecccCchhHHHHHHHhccccCCCCCCCCeeeecCchhheeeecceeeccccccC---
Confidence            57899999999999999999999999999999999999999876        5799999999999999999999987   


Q ss_pred             ccccCCCC-CCccccchhhhccCCCCCCCCCCCCCceeeeecCCCCCCcchhhhhccCcceeeccccCCCCCcceEEEEc
Q 020718          169 ELARRSGS-NLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVT  247 (322)
Q Consensus       169 ~~~~g~gg-~~~~~~~~~E~~~~~~~~~g~~~~~G~v~m~v~~~~~~~~~~~l~ar~G~l~m~~an~~p~s~gSqFfItl  247 (322)
                         +|+|| +|||..|.||.+..+|.      .+++|||                         ||.|||+||||||||+
T Consensus        84 ---nGtGGeSIYG~~FdDEnF~lKHd------rpflLSM-------------------------AN~GpNTNgSQFFITT  129 (372)
T KOG0546|consen   84 ---NGTGGESIYGEKFDDENFELKHD------RPFLLSM-------------------------ANRGPNTNGSQFFITT  129 (372)
T ss_pred             ---CCCCcccccccccccccceeccC------cchhhhh-------------------------hcCCCCCCCcceEEeC
Confidence               89999 99999999999887763      3333444                         7899999999999999


Q ss_pred             CCCCCCCCCCcEEEEEEcCHHHHHHHhcCccccCCCCCCcchhhhhccccchhhcccCCCCCCccEEEeeeeecC
Q 020718          248 KDSPELDASSLVVGRVLEGMEVAEKIGEVKTVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNCGLME  322 (322)
Q Consensus       248 ~~~p~LDg~~~VFGrVi~Gmdvl~~I~~~~t~~~~~~~~~~~~~~~~gd~~~~~a~~~~~~P~~~V~I~~cG~l~  322 (322)
                      .++|||||+|+|||+||.|++||+.|+.+.|+..                         ++|+.+|+|.+||+|.
T Consensus       130 ~p~PHLdGkHVVFGqVI~G~~VVr~IEn~~~d~~-------------------------skP~~dV~I~dCGel~  179 (372)
T KOG0546|consen  130 VPTPHLDGKHVVFGQVIKGKEVVREIENLETDEE-------------------------SKPLADVVISDCGELV  179 (372)
T ss_pred             CCCCCcCCceeEEeeEeechhHHHHHhccccccC-------------------------CCCccceEeccccccc
Confidence            9999999999999999999999999999999997                         7999999999999984

>KOG0880 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=8.1e-51  Score=355.83  Aligned_cols=167  Identities=36%  Similarity=0.700  Sum_probs=154.3

Q ss_pred             CCCCCceEEEEEEeCCeeeeeEEEEecCCCCChhHHHHHHHhc-CCCcccccCcEEEEeccCeeEeeCccccCccccccc
Q 020718           94 NKDPTKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVS-GTAGISYRRKEFIKIMPNYVQHGGVRSYGVDAELAR  172 (322)
Q Consensus        94 ~~~~~~~v~~di~i~g~~~GrIvIeL~~d~aP~tv~nF~~L~~-~~~g~~Y~g~~f~Rvi~gfviQgGd~~~~~~~~~~~  172 (322)
                      .++++.+|||||.+++++.|||+|+||++.+|+||+||.+||. +.++.+|.|++||||+++|||||||++.+      +
T Consensus        35 ~p~vT~kV~fdi~~g~~~~grIvigLfG~~vPKTV~NF~~l~~~~~~~~gY~gS~FhRVi~nfmIQGGd~t~g------~  108 (217)
T KOG0880|consen   35 GPKVTHKVYFDIEIGGEPVGRIVIGLFGKVVPKTVENFRALATSGEKGYGYKGSKFHRVIPNFMIQGGDFTKG------D  108 (217)
T ss_pred             CCcceeEEEEEEEECCEeccEEEEEeccccchHHHHHHHHHHccCCCCcccCCceeeeeecCceeecCccccC------C
Confidence            5678999999999999999999999999999999999999999 66788999999999999999999999876      7


Q ss_pred             CCCC-CCccccchhhhccCCCCCCCCCCCCCceeeeecCCCCCCcchhhhhccCcceeeccccCCCCCcceEEEEcCCCC
Q 020718          173 RSGS-NLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSP  251 (322)
Q Consensus       173 g~gg-~~~~~~~~~E~~~~~~~~~g~~~~~G~v~m~v~~~~~~~~~~~l~ar~G~l~m~~an~~p~s~gSqFfItl~~~p  251 (322)
                      ++|+ ++||++|+||++..+|                             .|+|.|+|  +|.|||+||||||||+...+
T Consensus       109 gtGg~SIyG~~F~DENf~LkH-----------------------------~rpG~lSM--An~GpDtNGsQFfItT~~t~  157 (217)
T KOG0880|consen  109 GTGGKSIYGEKFPDENFKLKH-----------------------------DRPGRLSM--ANAGPDTNGSQFFITTVKTP  157 (217)
T ss_pred             CCCCeEeecCCCCCccceeec-----------------------------CCCceEee--eccCCCCCCceEEEEecCCc
Confidence            8888 9999999999877765                             34455554  78999999999999999999


Q ss_pred             CCCCCCcEEEEEEcCHHHHHHHhcCccccCCCCCCcchhhhhccccchhhcccCCCCCCccEEEeeeeecC
Q 020718          252 ELDASSLVVGRVLEGMEVAEKIGEVKTVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNCGLME  322 (322)
Q Consensus       252 ~LDg~~~VFGrVi~Gmdvl~~I~~~~t~~~~~~~~~~~~~~~~gd~~~~~a~~~~~~P~~~V~I~~cG~l~  322 (322)
                      ||||+|+|||+|++|||+|.+|+.++||.+                         ++|.++|+|.+||.|+
T Consensus       158 wLDGkhVVFGqVl~Gmdvv~~Ie~~~TD~~-------------------------dkP~e~v~I~~~g~l~  203 (217)
T KOG0880|consen  158 WLDGKHVVFGQVLEGMDVVRKIENVKTDER-------------------------DKPLEDVVIANCGELP  203 (217)
T ss_pred             cccCceeEEeeehhhHHHHHHHHhcccCCC-------------------------CCccccEEEeecCccc
Confidence            999999999999999999999999999997                         8999999999999875

>KOG0879 consensus U-snRNP-associated cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=6.5e-45  Score=301.52  Aligned_cols=163  Identities=31%  Similarity=0.548  Sum_probs=147.9

Q ss_pred             CCceEEEEEEeCCeeeeeEEEEecCCCCChhHHHHHHHhcCCC-----cccccCcEEEEeccCeeEeeCccccCcccccc
Q 020718           97 PTKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTA-----GISYRRKEFIKIMPNYVQHGGVRSYGVDAELA  171 (322)
Q Consensus        97 ~~~~v~~di~i~g~~~GrIvIeL~~d~aP~tv~nF~~L~~~~~-----g~~Y~g~~f~Rvi~gfviQgGd~~~~~~~~~~  171 (322)
                      .++.||||++|+|.++|||.||||.|.+|+|++||++.|++..     -..|+++.|||||++|||||||+..+      
T Consensus         9 ~nPvVF~dv~igg~~~GrikieLFadivPkTAENFRQFCTGE~r~~g~PiGYK~~tFHRvIkdFMiQgGDFv~g------   82 (177)
T KOG0879|consen    9 NNPVVFFDVAIGGRPIGRIKIELFADIVPKTAENFRQFCTGEYRKDGVPIGYKNSTFHRVIKDFMIQGGDFVNG------   82 (177)
T ss_pred             CCCeEEEEEeeCCEEcceEEEEEeeccChhhHHHHHhhcccccccCCccccccccchHHHhhhheeccCceecC------
Confidence            4789999999999999999999999999999999999999863     36799999999999999999999865      


Q ss_pred             cCCCC-CCccccchhhhccCCCCCCCCCCCCCceeeeecCCCCCCcchhhhhccCcceeeccccCCCCCcceEEEEcCCC
Q 020718          172 RRSGS-NLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDS  250 (322)
Q Consensus       172 ~g~gg-~~~~~~~~~E~~~~~~~~~g~~~~~G~v~m~v~~~~~~~~~~~l~ar~G~l~m~~an~~p~s~gSqFfItl~~~  250 (322)
                      +|+|- ++|+.+|++|++..+|..                             +|.|+|  +|+++++||.|||||....
T Consensus        83 DGtG~~sIy~~~F~DENFtlkH~~-----------------------------PGlLSM--ANsG~~tNGCQFFITcakc  131 (177)
T KOG0879|consen   83 DGTGVASIYGSTFPDENFTLKHDG-----------------------------PGLLSM--ANSGKDTNGCQFFITCAKC  131 (177)
T ss_pred             CCceEEEEcCCCCCCcceeeecCC-----------------------------Cceeec--cccCCCCCCceEEEEeccc
Confidence            67775 899999999988877633                             344444  7899999999999999999


Q ss_pred             CCCCCCCcEEEEEEcCHHHHHHHhcCccccCCCCCCcchhhhhccccchhhcccCCCCCCccEEEeeeeec
Q 020718          251 PELDASSLVVGRVLEGMEVAEKIGEVKTVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNCGLM  321 (322)
Q Consensus       251 p~LDg~~~VFGrVi~Gmdvl~~I~~~~t~~~~~~~~~~~~~~~~gd~~~~~a~~~~~~P~~~V~I~~cG~l  321 (322)
                      .+||++|+|||||++||.++++|+.+++..+                         +||+.+|+|+.||++
T Consensus       132 dfLD~KHVVFGrvldGlli~rkIEnvp~G~N-------------------------nkPKl~v~i~qCGem  177 (177)
T KOG0879|consen  132 DFLDGKHVVFGRVLDGLLIMRKIENVPTGPN-------------------------NKPKLPVVIVQCGEM  177 (177)
T ss_pred             ccccCceEEEeeeehhhhhhhhhhcCCCCCC-------------------------CCCCCcEEEeecccC
Confidence            9999999999999999999999999999887                         899999999999985

>PTZ00221 cyclophilin; Provisional

Probab=100.00  E-value=7.3e-43  Score=321.80  Aligned_cols=164  Identities=25%  Similarity=0.399  Sum_probs=141.3

Q ss_pred             CCCCCceEEEEEEeCCeeeeeEEEEecCCCCChhHHHHHHHhcCCCc--------ccccCcEEEEeccC-eeEeeCcccc
Q 020718           94 NKDPTKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAG--------ISYRRKEFIKIMPN-YVQHGGVRSY  164 (322)
Q Consensus        94 ~~~~~~~v~~di~i~g~~~GrIvIeL~~d~aP~tv~nF~~L~~~~~g--------~~Y~g~~f~Rvi~g-fviQgGd~~~  164 (322)
                      +..++++|||||+|++++.|||+||||.+.||+||+||++||++.++        .+|+|+.||||+++ |+||+||+..
T Consensus        48 ~~~~~~rVfldisig~~~~GrIvIELf~d~aP~T~eNF~~Lc~g~~g~~~~~g~k~~Y~gt~FhRVi~~~f~iqgGD~~~  127 (249)
T PTZ00221         48 EEQNSCRAFLDISIGDVLAGRLVFELFEDVVPETVENFRALITGSCGIDTNTGVKLDYLYTPVHHVDRNNNIIVLGELDS  127 (249)
T ss_pred             cCCCCCEEEEEEeeCCeecceEEEEEeCCCCcHHHHHHHHHhhcccccccccCcccccCCCEEEEEeCCCCEEEeCCCCC
Confidence            44668899999999999999999999999999999999999987643        24999999999986 8999999752


Q ss_pred             CcccccccCCCCCCccccchhhhccCCCCCCCCCCCCCceeeeecCCCCCCcchhhhhccCcceeeccccCCCCCcceEE
Q 020718          165 GVDAELARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFV  244 (322)
Q Consensus       165 ~~~~~~~~g~gg~~~~~~~~~E~~~~~~~~~g~~~~~G~v~m~v~~~~~~~~~~~l~ar~G~l~m~~an~~p~s~gSqFf  244 (322)
                               .|.+++|..|.+|.....      |+.+|+|+|                         +|.++|+||||||
T Consensus       128 ---------~g~s~~G~~f~dE~~~~~------h~~~G~LsM-------------------------an~GpntngSQFf  167 (249)
T PTZ00221        128 ---------FNVSSTGTPIADEGYRHR------HTERGLLTM-------------------------ISEGPHTSGSVFG  167 (249)
T ss_pred             ---------CCccCCCCcccCcccccc------CCCCCEEEe-------------------------CcCCCCCccceEE
Confidence                     234556777777754322      456666666                         5678999999999


Q ss_pred             EEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCccccCCCCCCcchhhhhccccchhhcccCCCCCCccEEEeeeeecC
Q 020718          245 IVTKDSPELDASSLVVGRVLEGMEVAEKIGEVKTVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNCGLME  322 (322)
Q Consensus       245 Itl~~~p~LDg~~~VFGrVi~Gmdvl~~I~~~~t~~~~~~~~~~~~~~~~gd~~~~~a~~~~~~P~~~V~I~~cG~l~  322 (322)
                      ||+.++++||++|+|||||++|||||++|++++++.+                         ++|.++|+|.+||+|.
T Consensus       168 ITl~~~p~LDgk~vVFGrVveGmdVv~kIe~v~~d~~-------------------------grP~~~V~I~~Cgvl~  220 (249)
T PTZ00221        168 ITLGPSPSLDFKQVVFGKAVDDLSLLEKLESLPLDDV-------------------------GRPLLPVTVSFCGALT  220 (249)
T ss_pred             EECCCCCccCCCceEEEEEEeCHHHHHHHHcCCcCCC-------------------------CCCCCCeEEEECeEec
Confidence            9999999999999999999999999999999998765                         8999999999999973

>cd01926 cyclophilin_ABH_like cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain

Probab=100.00  E-value=9.8e-43  Score=304.31  Aligned_cols=158  Identities=34%  Similarity=0.673  Sum_probs=134.7

Q ss_pred             ceEEEEEEeCCeeeeeEEEEecCCCCChhHHHHHHHhcCCCc-----ccccCcEEEEeccCeeEeeCccccCcccccccC
Q 020718           99 KRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAG-----ISYRRKEFIKIMPNYVQHGGVRSYGVDAELARR  173 (322)
Q Consensus        99 ~~v~~di~i~g~~~GrIvIeL~~d~aP~tv~nF~~L~~~~~g-----~~Y~g~~f~Rvi~gfviQgGd~~~~~~~~~~~g  173 (322)
                      ++||||+.++|+..|+|+||||.+.||+||+||++||++.++     .+|+++.||||+++|+|||||+..+      ++
T Consensus         1 p~v~~di~i~~~~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~~~~~~Y~~~~f~Rv~~~~~iq~Gd~~~~------~g   74 (164)
T cd01926           1 PKVFFDITIGGEPAGRIVMELFADVVPKTAENFRALCTGEKGKGGKPFGYKGSTFHRVIPDFMIQGGDFTRG------NG   74 (164)
T ss_pred             CEEEEEEeECCeeceeEEEEEeCCCCCHHHHHHHHHhcccCCCcccccccCCCEEEEEeCCcEEEcCCccCC------CC
Confidence            479999999999999999999999999999999999997544     5899999999999999999997643      34


Q ss_pred             CCC-CCccccchhhhccCCCCCCCCCCCCCceeeeecCCCCCCcchhhhhccCcceeeccccCCCCCcceEEEEcCCCCC
Q 020718          174 SGS-NLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPE  252 (322)
Q Consensus       174 ~gg-~~~~~~~~~E~~~~~~~~~g~~~~~G~v~m~v~~~~~~~~~~~l~ar~G~l~m~~an~~p~s~gSqFfItl~~~p~  252 (322)
                      .++ +++++.+++|....      .|+.+|+|+|                         ++.++++++|||||++++.++
T Consensus        75 ~~~~~~~g~~~~~e~~~~------~h~~~G~lsm-------------------------a~~~~~~~~sqFfIt~~~~~~  123 (164)
T cd01926          75 TGGKSIYGEKFPDENFKL------KHTGPGLLSM-------------------------ANAGPNTNGSQFFITTVKTPW  123 (164)
T ss_pred             CCCCcccCCccCCCCccc------cCCCccEEEe-------------------------eECCCCCcccEEEEEeCCCCc
Confidence            444 55666665553221      2446666666                         345689999999999999999


Q ss_pred             CCCCCcEEEEEEcCHHHHHHHhcCccccCCCCCCcchhhhhccccchhhcccCCCCCCccEEEeeee
Q 020718          253 LDASSLVVGRVLEGMEVAEKIGEVKTVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNCG  319 (322)
Q Consensus       253 LDg~~~VFGrVi~Gmdvl~~I~~~~t~~~~~~~~~~~~~~~~gd~~~~~a~~~~~~P~~~V~I~~cG  319 (322)
                      ||++|+|||||++|||||++|++++++ +                         ++|.++|+|.+||
T Consensus       124 Ld~~~tvFG~V~~G~dvl~~i~~~~~~-~-------------------------~~P~~~i~I~~cG  164 (164)
T cd01926         124 LDGKHVVFGKVVEGMDVVKKIENVGSG-N-------------------------GKPKKKVVIADCG  164 (164)
T ss_pred             cCCcccEEEEEEEcHHHHHHHHcCCCC-C-------------------------CCCcCCeEEEECC
Confidence            999999999999999999999999998 4                         8999999999998

This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase active site. Cyp-3. S. cerevisiae Cpr1 interacts with the Rpd3 - Sin3 complex and in addition is a component of the Set3 complex. S. cerevisiae Cpr1 has also been shown to have a role in Zpr1p nuclear transport. Human cyclophilin H associates with the [U4/U6.U5] tri-snRNP particles of the spl

>PLN03149 peptidyl-prolyl isomerase H (cyclophilin H); Provisional

Probab=100.00  E-value=1.4e-42  Score=309.08  Aligned_cols=162  Identities=30%  Similarity=0.542  Sum_probs=137.0

Q ss_pred             CceEEEEEEeCCeeeeeEEEEecCCCCChhHHHHHHHhcCCC---c--ccccCcEEEEeccCeeEeeCccccCccccccc
Q 020718           98 TKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTA---G--ISYRRKEFIKIMPNYVQHGGVRSYGVDAELAR  172 (322)
Q Consensus        98 ~~~v~~di~i~g~~~GrIvIeL~~d~aP~tv~nF~~L~~~~~---g--~~Y~g~~f~Rvi~gfviQgGd~~~~~~~~~~~  172 (322)
                      +++|||||+++++..|||+||||.+.+|+||+||++||+++.   +  ..|+++.||||+++|+|||||+..+      +
T Consensus        18 ~~~v~~di~~~~~~~G~i~ieL~~~~aP~t~~NF~~Lc~g~~~~~g~~~~Y~~~~fhrVi~~f~iqgGd~~~~------~   91 (186)
T PLN03149         18 NPVVFFDVTIGGIPAGRIKMELFADIAPKTAENFRQFCTGEFRKAGLPQGYKGCQFHRVIKDFMIQGGDFLKG------D   91 (186)
T ss_pred             CCEEEEEEeeCCcccccEEEEEcCCCCcHHHHHHHHHHhhhccccCcccccCCcEEEEEcCCcEEEcCCcccC------C
Confidence            568999999999999999999999999999999999998652   1  2399999999999999999997543      4


Q ss_pred             CCCC-CCccccchhhhccCCCCCCCCCCCCCceeeeecCCCCCCcchhhhhccCcceeeccccCCCCCcceEEEEcCCCC
Q 020718          173 RSGS-NLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSP  251 (322)
Q Consensus       173 g~gg-~~~~~~~~~E~~~~~~~~~g~~~~~G~v~m~v~~~~~~~~~~~l~ar~G~l~m~~an~~p~s~gSqFfItl~~~p  251 (322)
                      +.|+ ++++..|++|....      .|+.+|+|+|                         ++.++++++||||||+.+.|
T Consensus        92 g~g~~~~~g~~f~~e~~~~------~h~~~G~lsm-------------------------a~~g~~s~~sqFfIt~~~~p  140 (186)
T PLN03149         92 GTGCVSIYGSKFEDENFIA------KHTGPGLLSM-------------------------ANSGPNTNGCQFFITCAKCD  140 (186)
T ss_pred             CCCcccccCCccCCccccc------ccCCCCEEEE-------------------------eeCCCCCcccEEEEECCCCC
Confidence            5554 55666666553221      2455566665                         45679999999999999999


Q ss_pred             CCCCCCcEEEEEE-cCHHHHHHHhcCccccCCCCCCcchhhhhccccchhhcccCCCCCCccEEEeeeeec
Q 020718          252 ELDASSLVVGRVL-EGMEVAEKIGEVKTVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNCGLM  321 (322)
Q Consensus       252 ~LDg~~~VFGrVi-~Gmdvl~~I~~~~t~~~~~~~~~~~~~~~~gd~~~~~a~~~~~~P~~~V~I~~cG~l  321 (322)
                      +||++|+|||||+ +|||||++|++++++++                         ++|..+|+|.+||++
T Consensus       141 ~Ldg~~tVFG~Vi~eG~dvl~~I~~~~~~~~-------------------------~~P~~~i~I~~cG~~  186 (186)
T PLN03149        141 WLDNKHVVFGRVLGDGLLVVRKIENVATGPN-------------------------NRPKLACVISECGEM  186 (186)
T ss_pred             ccCCCceEEEEEEECcHHHHHHHHcCCCCCC-------------------------CCCcCCeEEEeCEeC
Confidence            9999999999999 89999999999999876                         899999999999986

>PTZ00060 cyclophilin; Provisional

Probab=100.00  E-value=5e-42  Score=304.89  Aligned_cols=162  Identities=32%  Similarity=0.588  Sum_probs=136.0

Q ss_pred             CceEEEEEEeCCeeeeeEEEEecCCCCChhHHHHHHHhcCC------CcccccCcEEEEeccCeeEeeCccccCcccccc
Q 020718           98 TKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGT------AGISYRRKEFIKIMPNYVQHGGVRSYGVDAELA  171 (322)
Q Consensus        98 ~~~v~~di~i~g~~~GrIvIeL~~d~aP~tv~nF~~L~~~~------~g~~Y~g~~f~Rvi~gfviQgGd~~~~~~~~~~  171 (322)
                      +++||||++++++..|+|+||||.+.||+||+||++||++.      +..+|+|+.||||+++|+|||||+..+      
T Consensus        15 ~~~v~~di~i~~~~~G~ivIeL~~d~aP~t~~nF~~L~~g~~~~~~g~~~~Y~~~~fhRvi~~~~iqgGd~~~~------   88 (183)
T PTZ00060         15 RPKVFFDISIDNAPAGRIVFELFSDVTPKTAENFRALCIGDKVGSSGKNLHYKGSIFHRIIPQFMCQGGDITNH------   88 (183)
T ss_pred             CCEEEEEEEECCEeCceEEEEEcCCCCcHHHHHHHHHhcCCcccccCcccccCCeEEEEEcCCCeEEeCCccCC------
Confidence            67899999999999999999999999999999999999842      234899999999999999999998643      


Q ss_pred             cCCCC-CCccccchhhhccCCCCCCCCCCCCCceeeeecCCCCCCcchhhhhccCcceeeccccCCCCCcceEEEEcCCC
Q 020718          172 RRSGS-NLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDS  250 (322)
Q Consensus       172 ~g~gg-~~~~~~~~~E~~~~~~~~~g~~~~~G~v~m~v~~~~~~~~~~~l~ar~G~l~m~~an~~p~s~gSqFfItl~~~  250 (322)
                      ++.++ ++++..+++|....      .|+.+|+|+|                         ++.++++++|||||++.+.
T Consensus        89 ~g~~g~~~~g~~~~~e~~~~------~h~~~G~lsm-------------------------a~~g~~~~~sqFfIt~~~~  137 (183)
T PTZ00060         89 NGTGGESIYGRKFTDENFKL------KHDQPGLLSM-------------------------ANAGPNTNGSQFFITTVPC  137 (183)
T ss_pred             CCCCCCcccccccCCccccc------cCCCCCEEEe-------------------------ccCCCCCCcceEEEEeCCC
Confidence            34444 55566665553221      2344566665                         3456899999999999999


Q ss_pred             CCCCCCCcEEEEEEcCHHHHHHHhcCccccCCCCCCcchhhhhccccchhhcccCCCCCCccEEEeeeeecC
Q 020718          251 PELDASSLVVGRVLEGMEVAEKIGEVKTVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNCGLME  322 (322)
Q Consensus       251 p~LDg~~~VFGrVi~Gmdvl~~I~~~~t~~~~~~~~~~~~~~~~gd~~~~~a~~~~~~P~~~V~I~~cG~l~  322 (322)
                      ++||++|+|||||++|||||++|+++++..                          ++|.++|+|++||+|+
T Consensus       138 ~~Ldg~~tvFG~Vi~G~dvl~~I~~~~~~~--------------------------~~P~~~v~I~~cg~~~  183 (183)
T PTZ00060        138 PWLDGKHVVFGKVIEGMEVVRAMEKEGTQS--------------------------GYPKKPVVVTDCGELQ  183 (183)
T ss_pred             cccCCCccEEEEEEccHHHHHHHHccCCCC--------------------------CCCcCCeEEEEeEEcC
Confidence            999999999999999999999999988843                          7999999999999985

>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=5.1e-43  Score=311.35  Aligned_cols=166  Identities=30%  Similarity=0.558  Sum_probs=155.8

Q ss_pred             CCCCCceEEEEEEeCCeeeeeEEEEecCCCCChhHHHHHHHhcCCCcccccCcEEEEeccCeeEeeCccccCcccccccC
Q 020718           94 NKDPTKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHGGVRSYGVDAELARR  173 (322)
Q Consensus        94 ~~~~~~~v~~di~i~g~~~GrIvIeL~~d~aP~tv~nF~~L~~~~~g~~Y~g~~f~Rvi~gfviQgGd~~~~~~~~~~~g  173 (322)
                      ...-+++||+++.|++...|||+++|..|..|+|++||+.||.+.+|+.|+|+.||||||.||+||||++++      +|
T Consensus       132 aa~~~pqv~~~ikig~~~~Gri~~~lrtdv~Pmtaenfr~Lctge~gfgykgssfhriip~fmcqggdftn~------ng  205 (298)
T KOG0111|consen  132 AAMENPQVYHDIKIGEDRAGRIVMLLRTDVVPMTAENFRCLCTGEAGFGYKGSSFHRIIPKFMCQGGDFTNG------NG  205 (298)
T ss_pred             hhhhChHhhhheeecccccceEEEeecccCChhhhhhhhhhccccCccCccccchhhhhhhhhccCCccccC------CC
Confidence            455689999999999999999999999999999999999999999999999999999999999999999876      89


Q ss_pred             CCC-CCccccchhhhccCCCCCCCCCCCCCceeeeecCCCCCCcchhhhhccCcceeeccccCCCCCcceEEEEcCCCCC
Q 020718          174 SGS-NLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPE  252 (322)
Q Consensus       174 ~gg-~~~~~~~~~E~~~~~~~~~g~~~~~G~v~m~v~~~~~~~~~~~l~ar~G~l~m~~an~~p~s~gSqFfItl~~~p~  252 (322)
                      +|| +|||.+|.+|++..+|      +..|+|+|                         +|+++|+|||||||++....|
T Consensus       206 tggksiygkkfddenf~lkh------t~pgtlsm-------------------------ansgantngsqffict~ktdw  254 (298)
T KOG0111|consen  206 TGGKSIYGKKFDDENFTLKH------TMPGTLSM-------------------------ANSGANTNGSQFFICTEKTDW  254 (298)
T ss_pred             CCCcccccccccccceeeec------CCCceeec-------------------------cccCCCCCCceEEEEeccccc
Confidence            998 9999999999887764      56777777                         789999999999999999999


Q ss_pred             CCCCCcEEEEEEcCHHHHHHHhcCccccCCCCCCcchhhhhccccchhhcccCCCCCCccEEEeeeeecC
Q 020718          253 LDASSLVVGRVLEGMEVAEKIGEVKTVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNCGLME  322 (322)
Q Consensus       253 LDg~~~VFGrVi~Gmdvl~~I~~~~t~~~~~~~~~~~~~~~~gd~~~~~a~~~~~~P~~~V~I~~cG~l~  322 (322)
                      |||+|+|||.|++||+||+++++.++..                          |+|..+|+|.+||+++
T Consensus       255 ldgkhvvfghv~eg~~vvrq~e~qgsks--------------------------gkp~qkv~i~~cge~~  298 (298)
T KOG0111|consen  255 LDGKHVVFGHVVEGMNVVRQVEQQGSKS--------------------------GKPQQKVKIVECGEIE  298 (298)
T ss_pred             ccCceeEEeeecchHHHHHHHHhccCCC--------------------------CCcceEEEEEeccccC
Confidence            9999999999999999999999999876                          8999999999999986

>COG0652 PpiB Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=5.6e-41  Score=289.86  Aligned_cols=152  Identities=30%  Similarity=0.474  Sum_probs=126.4

Q ss_pred             eeeeeEEEEecCCCCChhHHHHHHHhcCCCcccccCcEEEEeccCeeEeeCccccCcccccccCCCCCCccccchhhhcc
Q 020718          110 KSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHGGVRSYGVDAELARRSGSNLETERLMEEWKA  189 (322)
Q Consensus       110 ~~~GrIvIeL~~d~aP~tv~nF~~L~~~~~g~~Y~g~~f~Rvi~gfviQgGd~~~~~~~~~~~g~gg~~~~~~~~~E~~~  189 (322)
                      +..|+|+||||++.||+||+||++||+.+   ||+|+.||||++||||||||++.+      .+.|+  .++.+++|+..
T Consensus         6 t~~G~I~ieL~~~~aP~Tv~NF~~l~~~g---~Ydg~~FHRVi~~FmiQgGd~~~~------~g~gg--~~~~f~~E~~~   74 (158)
T COG0652           6 TNKGDITIELYPDKAPKTVANFLQLVKEG---FYDGTIFHRVIPGFMIQGGDPTGG------DGTGG--PGPPFKDENFA   74 (158)
T ss_pred             ccCCCEEEEECCCcCcHHHHHHHHHHHcC---CCCCceEEEeecCceeecCCCCCC------CCCCC--CCCCCcccccc
Confidence            44999999999999999999999999999   999999999999999999999753      45555  23778888776


Q ss_pred             CCCCCCCCCCCCCceeeeecCCCCCCcchhhhhccCcceeeccccC-CCCCcceEEEEcCCCCCCCCCCcEEEEEEcCHH
Q 020718          190 NNERCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQGKLEIDQEEVG-KDPNGTEFVIVTKDSPELDASSLVVGRVLEGME  268 (322)
Q Consensus       190 ~~~~~~g~~~~~G~v~m~v~~~~~~~~~~~l~ar~G~l~m~~an~~-p~s~gSqFfItl~~~p~LDg~~~VFGrVi~Gmd  268 (322)
                      ..+.    .|.+|+++|                         ||.+ ||+|||||||++.+.+|||++|+|||+|++|||
T Consensus        75 ~~~~----~~~~G~lsM-------------------------A~~g~P~t~~SQFFI~~~~~~~Ld~~ytVFG~Vv~Gmd  125 (158)
T COG0652          75 LNGD----RHKRGTLSM-------------------------ARAGDPNSNGSQFFITVVDNPFLDGKYTVFGQVVEGMD  125 (158)
T ss_pred             cccc----cCCcceEeE-------------------------cccCCcCCccCeEEEEecCCcccCCCCcEEEEEehhHH
Confidence            6542    256777777                         4555 999999999999999999999999999999999


Q ss_pred             HHHHHhcCccccCCCCCCcchhhhhccccchhhcccCCCCCCccEEEeeeeecC
Q 020718          269 VAEKIGEVKTVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNCGLME  322 (322)
Q Consensus       269 vl~~I~~~~t~~~~~~~~~~~~~~~~gd~~~~~a~~~~~~P~~~V~I~~cG~l~  322 (322)
                      +|++|++..+.....                     ..+.|...|+|.+.++++
T Consensus       126 vvdkI~~~~~~~~~~---------------------~~~~~~~~~~i~~~~~~~  158 (158)
T COG0652         126 VVDKIKNGDTDDSGY---------------------VQDVPADPVKILSVKIVE  158 (158)
T ss_pred             HHHHHHcCCccCCCc---------------------ccCCCCCCeEEeeeeeeC
Confidence            999999998876410                     114666778887767653

>KOG0881 consensus Cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.2e-41  Score=279.15  Aligned_cols=154  Identities=26%  Similarity=0.448  Sum_probs=138.7

Q ss_pred             CceEEEEEEeCCeeeeeEEEEecCCCCChhHHHHHHHhcCCCcccccCcEEEEeccCeeEeeCccccCcccccccCCCC-
Q 020718           98 TKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHGGVRSYGVDAELARRSGS-  176 (322)
Q Consensus        98 ~~~v~~di~i~g~~~GrIvIeL~~d~aP~tv~nF~~L~~~~~g~~Y~g~~f~Rvi~gfviQgGd~~~~~~~~~~~g~gg-  176 (322)
                      .+.|+++++     +|.|++|||-+.||+||+||.+|++.+   ||+|..||||+++||||||||+.       +|.|| 
T Consensus         9 ~~~V~LeTs-----mG~i~~ElY~kHaP~TC~NF~eLarrg---YYn~v~FHRii~DFmiQGGDPTG-------TGRGGa   73 (164)
T KOG0881|consen    9 PPNVTLETS-----MGKITLELYWKHAPRTCQNFAELARRG---YYNGVIFHRIIKDFMIQGGDPTG-------TGRGGA   73 (164)
T ss_pred             CCeEEEeec-----ccceehhhhhhcCcHHHHHHHHHHhcc---cccceeeeehhhhheeecCCCCC-------CCCCcc
Confidence            357899999     999999999999999999999999999   99999999999999999999973       67777 


Q ss_pred             CCccccchhhhccCCCCCCCCCCCCCceeeeecCCCCCCcchhhhhccCcceeeccccCCCCCcceEEEEcCCCCCCCCC
Q 020718          177 NLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDAS  256 (322)
Q Consensus       177 ~~~~~~~~~E~~~~~~~~~g~~~~~G~v~m~v~~~~~~~~~~~l~ar~G~l~m~~an~~p~s~gSqFfItl~~~p~LDg~  256 (322)
                      ++||..|.+|+....+     |..+|.++|                         +|.+||+|||||||||.+.+||||+
T Consensus        74 SIYG~kF~DEi~~dLk-----hTGAGILsM-------------------------ANaGPnTNgSQFFiTLAPt~~LDGK  123 (164)
T KOG0881|consen   74 SIYGDKFEDEIHSDLK-----HTGAGILSM-------------------------ANAGPNTNGSQFFITLAPTQWLDGK  123 (164)
T ss_pred             ccccchhhhhhhhhhc-----ccchhhhhh-------------------------hccCCCCCCceEEEEecCccccCCc
Confidence            9999999999875533     445666666                         7899999999999999999999999


Q ss_pred             CcEEEEEEcCHHHHHHHhcCccccCCCCCCcchhhhhccccchhhcccCCCCCCccEEEeeeeec
Q 020718          257 SLVVGRVLEGMEVAEKIGEVKTVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNCGLM  321 (322)
Q Consensus       257 ~~VFGrVi~Gmdvl~~I~~~~t~~~~~~~~~~~~~~~~gd~~~~~a~~~~~~P~~~V~I~~cG~l  321 (322)
                      |++||||..||+|++++..+.|+..                         +||..+|.|.+.-++
T Consensus       124 HTIFGRV~~Gm~vikr~G~v~Td~~-------------------------DRPi~~~kIika~~~  163 (164)
T KOG0881|consen  124 HTIFGRVCSGMEVIKRMGMVETDNS-------------------------DRPIDEVKIIKAYPS  163 (164)
T ss_pred             ceeehhhhhhHHHHHhhcceecCCC-------------------------CCCccceeeEeeecC
Confidence            9999999999999999999999987                         899999999876543

>cd01923 cyclophilin_RING cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain

Probab=100.00  E-value=5e-40  Score=285.96  Aligned_cols=152  Identities=24%  Similarity=0.418  Sum_probs=129.7

Q ss_pred             EEEEEEeCCeeeeeEEEEecCCCCChhHHHHHHHhcCCCcccccCcEEEEeccCeeEeeCccccCcccccccCCCC-CCc
Q 020718          101 VFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHGGVRSYGVDAELARRSGS-NLE  179 (322)
Q Consensus       101 v~~di~i~g~~~GrIvIeL~~d~aP~tv~nF~~L~~~~~g~~Y~g~~f~Rvi~gfviQgGd~~~~~~~~~~~g~gg-~~~  179 (322)
                      |.|+++     .|+|+||||.+.||+||+||++||+.+   +|+|+.||||+++|++||||+..       ++.|+ +++
T Consensus         2 v~~~T~-----~G~i~ieL~~~~aP~t~~nF~~L~~~g---~Y~~~~f~rv~~~~~iq~Gd~~~-------~g~~~~~~~   66 (159)
T cd01923           2 VRLHTN-----KGDLNLELHCDKAPKACENFIKLCKKG---YYDGTIFHRSIRNFMIQGGDPTG-------TGRGGESIW   66 (159)
T ss_pred             EEEEEc-----cccEEEEEeCCCChHHHHHHHHHHhcC---ccCCcEEEEEeCCcEEEecccCC-------CCCCCcccc
Confidence            456666     999999999999999999999999999   99999999999999999999853       34444 556


Q ss_pred             cccchhhhccCCCCCCCCCCCCCceeeeecCCCCCCcchhhhhccCcceeeccccCCCCCcceEEEEcCCCCCCCCCCcE
Q 020718          180 TERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLV  259 (322)
Q Consensus       180 ~~~~~~E~~~~~~~~~g~~~~~G~v~m~v~~~~~~~~~~~l~ar~G~l~m~~an~~p~s~gSqFfItl~~~p~LDg~~~V  259 (322)
                      +..+.+|+...     ..|+.+|+|+|                         ++.++++++|||||++++.++||++|+|
T Consensus        67 g~~~~~E~~~~-----~~h~~~G~v~m-------------------------a~~~~~s~~sqFfIt~~~~~~Ld~~~~v  116 (159)
T cd01923          67 GKPFKDEFKPN-----LSHDGRGVLSM-------------------------ANSGPNTNGSQFFITYRSCKHLDGKHTV  116 (159)
T ss_pred             CCccCcccccC-----cCcCCCcEEEE-------------------------eeCCCCCcccEEEEECCCCcccCCCccE
Confidence            66676664321     12556677766                         3567899999999999999999999999


Q ss_pred             EEEEEcCHHHHHHHhcCccccCCCCCCcchhhhhccccchhhcccCCCCCCccEEEeeeeecC
Q 020718          260 VGRVLEGMEVAEKIGEVKTVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNCGLME  322 (322)
Q Consensus       260 FGrVi~Gmdvl~~I~~~~t~~~~~~~~~~~~~~~~gd~~~~~a~~~~~~P~~~V~I~~cG~l~  322 (322)
                      ||||++|||+|++|++++++++                         ++|..+|+|.+|++++
T Consensus       117 FG~V~~G~~vl~~I~~~~~~~~-------------------------~~P~~~i~I~~~~i~~  154 (159)
T cd01923         117 FGRVVGGLETLEAMENVPDPGT-------------------------DRPKEEIKIEDTSVFV  154 (159)
T ss_pred             EEEEEcCHHHHHHHHcCCCCCC-------------------------CCCCCCeEEEEeEEEe
Confidence            9999999999999999998765                         8999999999999974

This group includes the nuclear proteins, Human hCyP-60 and Caenorhabditis elegans MOG-6 which, compared to the archetypal cyclophilin Human cyclophilin A exhibit reduced peptidylprolyl cis- trans isomerase activity and lack a residue important for cyclophilin binding. Human hCyP-60 has been shown to physically interact with the proteinase inhibitor peptide eglin c and; C. elegans MOG-6 to physically interact with MEP-1, a nuclear zinc finger protein. MOG-6 has been shown to function in germline sex determination.

>cd01928 Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like

Probab=100.00  E-value=7e-40  Score=283.36  Aligned_cols=149  Identities=21%  Similarity=0.429  Sum_probs=126.5

Q ss_pred             EEEEEEeCCeeeeeEEEEecCCCCChhHHHHHHHhcCCCcccccCcEEEEeccCeeEeeCccccCcccccccCCCC-CCc
Q 020718          101 VFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHGGVRSYGVDAELARRSGS-NLE  179 (322)
Q Consensus       101 v~~di~i~g~~~GrIvIeL~~d~aP~tv~nF~~L~~~~~g~~Y~g~~f~Rvi~gfviQgGd~~~~~~~~~~~g~gg-~~~  179 (322)
                      |.|+++     .|+|+||||.+.||+||+||++||+++   +|+|+.|||++++|++||||+..       ++.|+ +++
T Consensus         3 v~l~T~-----~G~i~ieL~~~~aP~t~~nF~~L~~~g---~Y~~~~f~rv~~~f~iq~Gd~~~-------~g~g~~~~~   67 (153)
T cd01928           3 VTLHTN-----LGDIKIELFCDDCPKACENFLALCASG---YYNGCIFHRNIKGFMVQTGDPTG-------TGKGGESIW   67 (153)
T ss_pred             EEEEEc-----cccEEEEEcCCCCcHHHHHHHHHHhcC---ccCCcEEEEeCCCCEEEccccCC-------CCCCCCccC
Confidence            566666     999999999999999999999999999   99999999999999999999853       34444 556


Q ss_pred             cccchhhhccCCCCCCCCCCCCCceeeeecCCCCCCcchhhhhccCcceeeccccCCCCCcceEEEEcCCCCCCCCCCcE
Q 020718          180 TERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLV  259 (322)
Q Consensus       180 ~~~~~~E~~~~~~~~~g~~~~~G~v~m~v~~~~~~~~~~~l~ar~G~l~m~~an~~p~s~gSqFfItl~~~p~LDg~~~V  259 (322)
                      +..+.+|+...     ..|+.+|+|+|                         ++.++++++|||||++++.++||++|+|
T Consensus        68 ~~~~~~e~~~~-----~~~~~~G~v~m-------------------------a~~~~~~~~SqFfI~~~~~~~Ld~~~tv  117 (153)
T cd01928          68 GKKFEDEFRET-----LKHDSRGVVSM-------------------------ANNGPNTNGSQFFITYAKQPHLDGKYTV  117 (153)
T ss_pred             CCccccccccC-----CCcCCCcEEEE-------------------------eeCCCCCcccEEEEEeCCCcccCCCceE
Confidence            66666665321     12456666666                         3456889999999999999999999999


Q ss_pred             EEEEEcCHHHHHHHhcCccccCCCCCCcchhhhhccccchhhcccCCCCCCccEEEeeee
Q 020718          260 VGRVLEGMEVAEKIGEVKTVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNCG  319 (322)
Q Consensus       260 FGrVi~Gmdvl~~I~~~~t~~~~~~~~~~~~~~~~gd~~~~~a~~~~~~P~~~V~I~~cG  319 (322)
                      ||||++|||+|++|++++++++                         ++|..+|+|.+|-
T Consensus       118 FG~V~~G~dvl~~I~~~~~~~~-------------------------~~P~~~i~I~~~~  152 (153)
T cd01928         118 FGKVIDGFETLDTLEKLPVDKK-------------------------YRPLEEIRIKDVT  152 (153)
T ss_pred             EEEEEeCHHHHHHHHcCCCCCC-------------------------CCCcCCeEEEEeE
Confidence            9999999999999999999776                         8999999999984

Proteins similar to Human cyclophilin-like peptidylprolyl cis- trans isomerase (PPIL3). Members of this family lack a key residue important for cyclosporin binding: the tryptophan residue corresponding to W121 in human hCyP-18a; most members have a histidine at this position. The exact function of the protein is not known.

>PRK10903 peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional

Probab=100.00  E-value=2.2e-39  Score=289.45  Aligned_cols=158  Identities=27%  Similarity=0.417  Sum_probs=126.9

Q ss_pred             CCceEEEEEEeCCeeeeeEEEEecCCCCChhHHHHHHHhcCCCcccccCcEEEEeccCeeEeeCccccCcccccccCCCC
Q 020718           97 PTKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHGGVRSYGVDAELARRSGS  176 (322)
Q Consensus        97 ~~~~v~~di~i~g~~~GrIvIeL~~d~aP~tv~nF~~L~~~~~g~~Y~g~~f~Rvi~gfviQgGd~~~~~~~~~~~g~gg  176 (322)
                      .+.+|.|+++     .|+|+||||.+.||+||+||++||+.+   ||||+.|||++++|++||||+...        .++
T Consensus        27 ~~~~v~l~T~-----~G~i~ieL~~~~aP~t~~NF~~L~~~g---~Ydg~~FhRvi~~f~iQgG~~~~~--------~~~   90 (190)
T PRK10903         27 GDPHVLLTTS-----AGNIELELNSQKAPVSVKNFVDYVNSG---FYNNTTFHRVIPGFMIQGGGFTEQ--------MQQ   90 (190)
T ss_pred             CCcEEEEEec-----cccEEEEEeCCCCcHHHHHHHHHHhcC---CcCCcEEEEEeCCceEEeCCcCCC--------CCC
Confidence            3556888887     999999999999999999999999999   999999999999999999987532        111


Q ss_pred             CCccccchhhhccCCCCCCCCCCCCCceeeeecCCCCCCcchhhhhccCcceeeccc-cCCCCCcceEEEEcCCCCCCCC
Q 020718          177 NLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQGKLEIDQEE-VGKDPNGTEFVIVTKDSPELDA  255 (322)
Q Consensus       177 ~~~~~~~~~E~~~~~~~~~g~~~~~G~v~m~v~~~~~~~~~~~l~ar~G~l~m~~an-~~p~s~gSqFfItl~~~p~LDg  255 (322)
                      ..++..+.+|+.      .++++.+|+|+|                         ++ .++|+|+|||||++++.++||+
T Consensus        91 ~~~~~~~~~e~~------~~l~~~~G~lam-------------------------a~~~~~~sn~SQFfIt~~~~~~ld~  139 (190)
T PRK10903         91 KKPNPPIKNEAD------NGLRNTRGTIAM-------------------------ARTADKDSATSQFFINVADNAFLDH  139 (190)
T ss_pred             CCCCCcccCccc------ccCcCCCcEEEe-------------------------CCCCCCCCcccEEEEECcCcccccC
Confidence            222344555432      234566677766                         23 2489999999999999999984


Q ss_pred             -----CCcEEEEEEcCHHHHHHHhcCccccCCCCCCcchhhhhccccchhhcccCCCCCCccEEEeeeeecC
Q 020718          256 -----SSLVVGRVLEGMEVAEKIGEVKTVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNCGLME  322 (322)
Q Consensus       256 -----~~~VFGrVi~Gmdvl~~I~~~~t~~~~~~~~~~~~~~~~gd~~~~~a~~~~~~P~~~V~I~~cG~l~  322 (322)
                           +|+|||+|++|||||++|++++++++.                     ...++|.++|+|.+|+++.
T Consensus       140 ~~~dg~ytvFG~V~eG~dvl~~I~~~~~~~~~---------------------~~~~~P~~~v~I~~~~v~~  190 (190)
T PRK10903        140 GQRDFGYAVFGKVVKGMDVADKISQVPTHDVG---------------------PYQNVPSKPVVILSAKVLP  190 (190)
T ss_pred             CccCCCccEEEEEecCHHHHHHHHcCCCCCCC---------------------CCCCcccCCeEEEEEEEeC
Confidence                 899999999999999999999997521                     0016999999999999873

>cd01927 cyclophilin_WD40 cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain

Probab=100.00  E-value=1.8e-39  Score=279.38  Aligned_cols=142  Identities=26%  Similarity=0.496  Sum_probs=121.0

Q ss_pred             eeeeEEEEecCCCCChhHHHHHHHhcCCCcccccCcEEEEeccCeeEeeCccccCcccccccCCCC-CCccccchhhhcc
Q 020718          111 SAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHGGVRSYGVDAELARRSGS-NLETERLMEEWKA  189 (322)
Q Consensus       111 ~~GrIvIeL~~d~aP~tv~nF~~L~~~~~g~~Y~g~~f~Rvi~gfviQgGd~~~~~~~~~~~g~gg-~~~~~~~~~E~~~  189 (322)
                      ..|+|+||||.+.||+||+||++||+.+   +|+|+.||||++||++||||+..       ++.|+ ++++..+++|+..
T Consensus         5 ~~G~i~ieL~~~~aP~t~~nF~~L~~~g---~Y~~~~f~Rvi~~f~iq~Gd~~~-------~g~g~~~~~~~~~~~e~~~   74 (148)
T cd01927           5 TKGDIHIRLFPEEAPKTVENFTTHARNG---YYNNTIFHRVIKGFMIQTGDPTG-------DGTGGESIWGKEFEDEFSP   74 (148)
T ss_pred             ccccEEEEEeCCCCcHHHHHHHHHhhcC---CcCCcEEEEEcCCcEEEecccCC-------CCCCCCcccCCcccccccc
Confidence            3999999999999999999999999999   99999999999999999999852       44554 5666667666532


Q ss_pred             CCCCCCCCCCCCCceeeeecCCCCCCcchhhhhccCcceeeccccCCCCCcceEEEEcCCCCCCCCCCcEEEEEEcCHHH
Q 020718          190 NNERCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEV  269 (322)
Q Consensus       190 ~~~~~~g~~~~~G~v~m~v~~~~~~~~~~~l~ar~G~l~m~~an~~p~s~gSqFfItl~~~p~LDg~~~VFGrVi~Gmdv  269 (322)
                      .     ..|+.+|+|+|                         ++.++++++|||||++++.++||++|+|||||++|||+
T Consensus        75 ~-----~~h~~~G~l~m-------------------------a~~~~~s~~SqFfIt~~~~p~Ldg~~tvFG~V~~G~dv  124 (148)
T cd01927          75 S-----LKHDRPYTLSM-------------------------ANAGPNTNGSQFFITTVATPWLDNKHTVFGRVVKGMDV  124 (148)
T ss_pred             c-----cCcCCCeEEEE-------------------------eeCCCCCCCceEEEEcCCCcccCCCceEEEEEEcCHHH
Confidence            1     12444566665                         45679999999999999999999999999999999999


Q ss_pred             HHHHhcCccccCCCCCCcchhhhhccccchhhcccCCCCCCccEEEee
Q 020718          270 AEKIGEVKTVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTN  317 (322)
Q Consensus       270 l~~I~~~~t~~~~~~~~~~~~~~~~gd~~~~~a~~~~~~P~~~V~I~~  317 (322)
                      |++|++++++++                         ++|.++|+|.+
T Consensus       125 l~~I~~~~~~~~-------------------------~~P~~~i~I~~  147 (148)
T cd01927         125 VQRIENVKTDKN-------------------------DRPYEDIKIIN  147 (148)
T ss_pred             HHHHHcCCCCCC-------------------------CCCcCCeEEEe
Confidence            999999999876                         89999999975

This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known.

>cd01921 cyclophilin_RRM cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM)

Probab=100.00  E-value=4.9e-39  Score=281.54  Aligned_cols=147  Identities=23%  Similarity=0.391  Sum_probs=119.2

Q ss_pred             eeeeEEEEecCCCCChhHHHHHHHhcCCCcccccCcEEEEeccCeeEeeCccccCcccccccCCCC-CCcc-------cc
Q 020718          111 SAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHGGVRSYGVDAELARRSGS-NLET-------ER  182 (322)
Q Consensus       111 ~~GrIvIeL~~d~aP~tv~nF~~L~~~~~g~~Y~g~~f~Rvi~gfviQgGd~~~~~~~~~~~g~gg-~~~~-------~~  182 (322)
                      ..|+|+||||.+.||+||+||++||+++   +|+|+.||||+++|+|||||+..       ++.++ ++++       ..
T Consensus         5 s~G~i~ieL~~~~aP~t~~nF~~L~~~~---~Y~g~~fhrvi~~f~iQgGd~~~-------~g~~~~~~~~~~~~~~~~~   74 (166)
T cd01921           5 TLGDLVIDLFTDECPLACLNFLKLCKLK---YYNFCLFYNVQKDFIAQTGDPTG-------TGAGGESIYSQLYGRQARF   74 (166)
T ss_pred             ccCCEEEEEcCCCCCHHHHHHHHHHhcC---CcCCCEEEEEeCCceEEECCcCC-------CCCCCcccccccccccCcc
Confidence            3999999999999999999999999999   99999999999999999999863       23333 2222       11


Q ss_pred             chhhhccCCCCCCCCCCCCCceeeeecCCCCCCcchhhhhccCcceeeccccCCCCCcceEEEEcCC-CCCCCCCCcEEE
Q 020718          183 LMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKD-SPELDASSLVVG  261 (322)
Q Consensus       183 ~~~E~~~~~~~~~g~~~~~G~v~m~v~~~~~~~~~~~l~ar~G~l~m~~an~~p~s~gSqFfItl~~-~p~LDg~~~VFG  261 (322)
                      +.+|+.     ....|+.+|+|+|                         ++.++++++|||||++.+ .++||++|+|||
T Consensus        75 ~~~e~~-----~~~~h~~~G~l~m-------------------------a~~~~~~~~SQFfIt~~~~~~~Ldg~~tvFG  124 (166)
T cd01921          75 FEPEIL-----PLLKHSKKGTVSM-------------------------VNAGDNLNGSQFYITLGENLDYLDGKHTVFG  124 (166)
T ss_pred             cCcccC-----CccccCCceEEEE-------------------------eECCCCCccceEEEEcCCCCcccCCCccEEE
Confidence            222221     0112445565555                         345688899999999976 799999999999


Q ss_pred             EEEcCHHHHHHHhcCccccCCCCCCcchhhhhccccchhhcccCCCCCCccEEEeeeeecC
Q 020718          262 RVLEGMEVAEKIGEVKTVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNCGLME  322 (322)
Q Consensus       262 rVi~Gmdvl~~I~~~~t~~~~~~~~~~~~~~~~gd~~~~~a~~~~~~P~~~V~I~~cG~l~  322 (322)
                      ||++|||||++|++++++.+                         ++|.++|+|.+|++|.
T Consensus       125 ~Vi~G~dvv~~I~~~~~~~~-------------------------~~P~~~i~I~~~~i~~  160 (166)
T cd01921         125 QVVEGFDVLEKINDAIVDDD-------------------------GRPLKDIRIKHTHILD  160 (166)
T ss_pred             EEEcCHHHHHHHHcCCCCCC-------------------------CCCCCCeEEEEEEEEC
Confidence            99999999999999999876                         8999999999999974

This subfamily of the cyclophilin domain family contains a number of eukaryotic cyclophilins having the RRM domain including the nuclear proteins: human hCyP-57, Arabidopsis thaliana AtCYP59, Caenorhabditis elegans CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241 protein has been shown to have a role in cell morphogenesis.

>cd01922 cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2

Probab=100.00  E-value=9.7e-39  Score=274.23  Aligned_cols=141  Identities=26%  Similarity=0.472  Sum_probs=119.2

Q ss_pred             eeeeEEEEecCCCCChhHHHHHHHhcCCCcccccCcEEEEeccCeeEeeCccccCcccccccCCCC-CCccccchhhhcc
Q 020718          111 SAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHGGVRSYGVDAELARRSGS-NLETERLMEEWKA  189 (322)
Q Consensus       111 ~~GrIvIeL~~d~aP~tv~nF~~L~~~~~g~~Y~g~~f~Rvi~gfviQgGd~~~~~~~~~~~g~gg-~~~~~~~~~E~~~  189 (322)
                      ..|+|+||||.+.||+||+||++||+++   +|+++.||||+++|++||||+..       ++.++ ++++..+.+|+..
T Consensus         5 ~~G~i~ieL~~~~aP~t~~nF~~L~~~g---~Y~~~~f~Rvi~~f~iq~Gd~~~-------~g~~~~~~~~~~~~~e~~~   74 (146)
T cd01922           5 TMGEITLELYWNHAPKTCKNFYELAKRG---YYNGTIFHRLIKDFMIQGGDPTG-------TGRGGASIYGKKFEDEIHP   74 (146)
T ss_pred             ccccEEEEEcCCCCcHHHHHHHHHHhcC---CcCCcEEEEEcCCcEEEecccCC-------CCCCcccccCCCccccccc
Confidence            4999999999999999999999999999   99999999999999999999853       34443 5566666666432


Q ss_pred             CCCCCCCCCCCCCceeeeecCCCCCCcchhhhhccCcceeeccccCCCCCcceEEEEcCCCCCCCCCCcEEEEEEcCHHH
Q 020718          190 NNERCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEV  269 (322)
Q Consensus       190 ~~~~~~g~~~~~G~v~m~v~~~~~~~~~~~l~ar~G~l~m~~an~~p~s~gSqFfItl~~~p~LDg~~~VFGrVi~Gmdv  269 (322)
                      .     ..|+.+|+|+|                         ++.++++++|||||++++.|+||++|+|||||++||||
T Consensus        75 ~-----~~h~~~G~l~m-------------------------a~~~~~s~~sqFfIt~~~~p~Ld~~~tvFG~V~~G~dv  124 (146)
T cd01922          75 E-----LKHTGAGILSM-------------------------ANAGPNTNGSQFFITLAPTPWLDGKHTIFGRVSKGMKV  124 (146)
T ss_pred             C-----cCCCCCeEEEE-------------------------eeCCCCCCccEEEEEcCCCcccCCCCCEEEEEEcCHHH
Confidence            1     12445666666                         35669999999999999999999999999999999999


Q ss_pred             HHHHhcCccccCCCCCCcchhhhhccccchhhcccCCCCCCccEEEee
Q 020718          270 AEKIGEVKTVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTN  317 (322)
Q Consensus       270 l~~I~~~~t~~~~~~~~~~~~~~~~gd~~~~~a~~~~~~P~~~V~I~~  317 (322)
                      |++|++++++ +                         ++|..+|+|.+
T Consensus       125 l~~I~~~~~~-~-------------------------~~P~~~I~I~~  146 (146)
T cd01922         125 IENMVEVQTQ-T-------------------------DRPIDEVKILK  146 (146)
T ss_pred             HHHHHhCCCC-C-------------------------CCcCCCeEEeC
Confidence            9999999997 3                         79999999963

These proteins bind their respective SNW chromatin binding protein in autologous systems, in a CsA independent manner indicating interaction with a surface outside the PPIase active site. SNW proteins play a basic and broad range role in signaling.

>cd01925 cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16

Probab=100.00  E-value=8.7e-38  Score=274.92  Aligned_cols=156  Identities=26%  Similarity=0.456  Sum_probs=132.8

Q ss_pred             CCceEEEEEEeCCeeeeeEEEEecCCCCChhHHHHHHHhcCCCcccccCcEEEEeccCeeEeeCccccCcccccccCCCC
Q 020718           97 PTKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHGGVRSYGVDAELARRSGS  176 (322)
Q Consensus        97 ~~~~v~~di~i~g~~~GrIvIeL~~d~aP~tv~nF~~L~~~~~g~~Y~g~~f~Rvi~gfviQgGd~~~~~~~~~~~g~gg  176 (322)
                      .+.+|.|+++     .|+|+||||.+.+|+||+||++||+.+   +|+|+.||||+++|++||||+..       ++.|+
T Consensus         4 ~~~~v~i~Ts-----~G~i~ieL~~~~~P~t~~nF~~L~~~~---~Y~~~~f~Rvi~~f~iQgGd~~~-------~g~g~   68 (171)
T cd01925           4 TTGKVILKTT-----AGDIDIELWSKEAPKACRNFIQLCLEG---YYDNTIFHRVVPGFIIQGGDPTG-------TGTGG   68 (171)
T ss_pred             cccEEEEEEc-----cccEEEEEeCCCChHHHHHHHHHHhcC---CCCCCEEEEEcCCcEEEccccCC-------CCccC
Confidence            3567889888     999999999999999999999999999   99999999999999999999853       45555


Q ss_pred             -CCccccchhhhccCCCCCCCCCCCCCceeeeecCCCCCCcchhhhhccCcceeeccccCCCCCcceEEEEcCCCCCCCC
Q 020718          177 -NLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDA  255 (322)
Q Consensus       177 -~~~~~~~~~E~~~~~~~~~g~~~~~G~v~m~v~~~~~~~~~~~l~ar~G~l~m~~an~~p~s~gSqFfItl~~~p~LDg  255 (322)
                       ++++..+.+|....     ..++.+|+|+|                         ++.++++++|||||++++.++||+
T Consensus        69 ~s~~g~~~~~E~~~~-----~~~~~~G~l~m-------------------------a~~g~~s~~sqFfIt~~~~~~ldg  118 (171)
T cd01925          69 ESIYGEPFKDEFHSR-----LRFNRRGLVGM-------------------------ANAGDDSNGSQFFFTLDKADELNN  118 (171)
T ss_pred             cccCCCccCcccccC-----cCCCCCcEEEE-------------------------CcCCCCCcccEEEEEcCCCcccCC
Confidence             56666666664321     12566777776                         456688999999999999999999


Q ss_pred             CCcEEEEEE-cCHHHHHHHhcCccccCCCCCCcchhhhhccccchhhcccCCCCCCccEEEeeeeecC
Q 020718          256 SSLVVGRVL-EGMEVAEKIGEVKTVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNCGLME  322 (322)
Q Consensus       256 ~~~VFGrVi-~Gmdvl~~I~~~~t~~~~~~~~~~~~~~~~gd~~~~~a~~~~~~P~~~V~I~~cG~l~  322 (322)
                      +|+|||||+ ++|++|++|++++++++                         ++|.++|+|.+|++++
T Consensus       119 ~~tvFG~V~g~~~~~v~~i~~~~~~~~-------------------------~~P~~~i~I~~~~i~~  161 (171)
T cd01925         119 KHTLFGKVTGDTIYNLLKLAEVETDKD-------------------------ERPVYPPKITSVEVLE  161 (171)
T ss_pred             CceEEEEEEECcHHHHHHHhcCCcCCC-------------------------CCcCCCeEEEEEEEEc
Confidence            999999999 46888999999999876                         7999999999999874

C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase activity, is cyclosporin insensitive and shows an altered substrate preference favoring, hydrophobic, acidic or amide amino acids. Most members of this subfamily have a glutamate residue in the active site at the position equivalent to a tryptophan (W121 in Human cyclophilin A), which has been shown to be important for cyclophilin binding.

>PRK10791 peptidyl-prolyl cis-trans isomerase B (rotamase B); Provisional

Probab=100.00  E-value=4.4e-37  Score=268.75  Aligned_cols=154  Identities=25%  Similarity=0.370  Sum_probs=120.3

Q ss_pred             EEEEEEeCCeeeeeEEEEecCCCCChhHHHHHHHhcCCCcccccCcEEEEeccCeeEeeCccccCcccccccCCCCCCcc
Q 020718          101 VFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHGGVRSYGVDAELARRSGSNLET  180 (322)
Q Consensus       101 v~~di~i~g~~~GrIvIeL~~d~aP~tv~nF~~L~~~~~g~~Y~g~~f~Rvi~gfviQgGd~~~~~~~~~~~g~gg~~~~  180 (322)
                      |.|+++     .|+|+|+||.+.||+||+||++||+.+   ||+|+.||||+++|+|||||+..+        .+...++
T Consensus         2 v~~~T~-----~G~i~ieL~~~~aP~t~~nF~~L~~~g---~Yd~~~fhRvi~~f~iQgGd~~~~--------~~~~~~~   65 (164)
T PRK10791          2 VTFHTN-----HGDIVIKTFDDKAPETVKNFLDYCREG---FYNNTIFHRVINGFMIQGGGFEPG--------MKQKATK   65 (164)
T ss_pred             EEEEEc-----cccEEEEEeCCCCcHHHHHHHHHHhcC---CcCCcEEEEEecCcEEEeCCcCCC--------CCcCCCC
Confidence            445665     999999999999999999999999999   999999999999999999987532        2211122


Q ss_pred             ccchhhhccCCCCCCCCCCCCCceeeeecCCCCCCcchhhhhccCcceeecccc-CCCCCcceEEEEcCCCCCCC-----
Q 020718          181 ERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQGKLEIDQEEV-GKDPNGTEFVIVTKDSPELD-----  254 (322)
Q Consensus       181 ~~~~~E~~~~~~~~~g~~~~~G~v~m~v~~~~~~~~~~~l~ar~G~l~m~~an~-~p~s~gSqFfItl~~~p~LD-----  254 (322)
                      ..+.+|..      ..+++.+|+|+|                         ++. ++++++|||||++.+.++||     
T Consensus        66 ~~~~~e~~------~~~~~~~G~lsm-------------------------a~~~~p~s~~SQFfI~~~~~~~ld~~~~~  114 (164)
T PRK10791         66 EPIKNEAN------NGLKNTRGTLAM-------------------------ARTQAPHSATAQFFINVVDNDFLNFSGES  114 (164)
T ss_pred             CCcCCccc------ccccCCCcEEEE-------------------------CCCCCcCCccceEEEEecCchhhcccccc
Confidence            34444421      123455666666                         333 48999999999999988776     


Q ss_pred             --C-CCcEEEEEEcCHHHHHHHhcCccccCCCCCCcchhhhhccccchhhcccCCCCCCccEEEeeeeecC
Q 020718          255 --A-SSLVVGRVLEGMEVAEKIGEVKTVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNCGLME  322 (322)
Q Consensus       255 --g-~~~VFGrVi~Gmdvl~~I~~~~t~~~~~~~~~~~~~~~~gd~~~~~a~~~~~~P~~~V~I~~cG~l~  322 (322)
                        + +|+|||||++|||||++|++++++....                     -.++|..+|+|.+|.+.|
T Consensus       115 ~d~~~~tvFG~V~eG~dvl~~I~~~~~~~~~~---------------------~~~~P~~~v~I~~~~i~~  164 (164)
T PRK10791        115 LQGWGYCVFAEVVEGMDVVDKIKGVATGRSGM---------------------HQDVPKEDVIIESVTVSE  164 (164)
T ss_pred             cCCCCccEEEEEecCHHHHHHHHcCcCCCCCc---------------------cCCCcCCCeEEEEEEEeC
Confidence              3 7999999999999999999999875200                     006999999999998865

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=7.4e-37  Score=294.81  Aligned_cols=153  Identities=27%  Similarity=0.461  Sum_probs=136.1

Q ss_pred             CCceEEEEEEeCCeeeeeEEEEecCCCCChhHHHHHHHhcCCCcccccCcEEEEeccCeeEeeCccccCcccccccCCCC
Q 020718           97 PTKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHGGVRSYGVDAELARRSGS  176 (322)
Q Consensus        97 ~~~~v~~di~i~g~~~GrIvIeL~~d~aP~tv~nF~~L~~~~~g~~Y~g~~f~Rvi~gfviQgGd~~~~~~~~~~~g~gg  176 (322)
                      ....+.+.++     +|+|.|.||++.+|+||+||-..|+.|   ||||..|||||+|||||+|||..       +|+||
T Consensus       403 l~~~aiihtt-----~gdi~~kl~p~ecpktvenf~th~rng---yy~~~~fhriik~fmiqtgdp~g-------~gtgg  467 (558)
T KOG0882|consen  403 LGKAAIIHTT-----QGDIHIKLYPEECPKTVENFTTHSRNG---YYDNHTFHRIIKGFMIQTGDPLG-------DGTGG  467 (558)
T ss_pred             cccceEEEec-----ccceEEEecccccchhhhhhhccccCc---cccCcchHHhhhhheeecCCCCC-------CCCCC
Confidence            3455667776     999999999999999999999999999   99999999999999999999983       78988


Q ss_pred             -CCccccchhhhccCCCCCCCCCCCCCceeeeecCCCCCCcchhhhhccCcceeeccccCCCCCcceEEEEcCCCCCCCC
Q 020718          177 -NLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDA  255 (322)
Q Consensus       177 -~~~~~~~~~E~~~~~~~~~g~~~~~G~v~m~v~~~~~~~~~~~l~ar~G~l~m~~an~~p~s~gSqFfItl~~~p~LDg  255 (322)
                       +++|..|.|||.....     |..+-+|+|                         +|.|+|+||||||||+.+.|||||
T Consensus       468 esiwg~dfedefh~~lr-----hdrpft~sm-------------------------anag~ntngsqffit~~~tpwld~  517 (558)
T KOG0882|consen  468 ESIWGKDFEDEFHPNLR-----HDRPFTVSM-------------------------ANAGPNTNGSQFFITTVPTPWLDG  517 (558)
T ss_pred             cccccccchhhcCcccc-----cCCCceEEe-------------------------cccCCCCCCceEEEEecCccccCC
Confidence             9999999999864321     444445555                         789999999999999999999999


Q ss_pred             CCcEEEEEEcCHHHHHHHhcCccccCCCCCCcchhhhhccccchhhcccCCCCCCccEEEeeee
Q 020718          256 SSLVVGRVLEGMEVAEKIGEVKTVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNCG  319 (322)
Q Consensus       256 ~~~VFGrVi~Gmdvl~~I~~~~t~~~~~~~~~~~~~~~~gd~~~~~a~~~~~~P~~~V~I~~cG  319 (322)
                      +|+|||||+.|||||++|+++.|++.                         +||+.+|.|.+--
T Consensus       518 khtvfgrv~~gm~vvqri~~v~t~k~-------------------------drp~e~v~iinis  556 (558)
T KOG0882|consen  518 KHTVFGRVTAGMDVVQRIEQVKTDKY-------------------------DRPYEDVKIINIS  556 (558)
T ss_pred             cceeEEEEecchhHHhHhhhcccCcC-------------------------CCCCCceeEEEEe
Confidence            99999999999999999999999886                         8999999998754

>cd01920 cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E

Probab=100.00  E-value=1.5e-35  Score=256.79  Aligned_cols=145  Identities=28%  Similarity=0.424  Sum_probs=113.8

Q ss_pred             eeeeEEEEecCCCCChhHHHHHHHhcCCCcccccCcEEEEeccCeeEeeCccccCcccccccCCCCCCccccchhhhccC
Q 020718          111 SAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHGGVRSYGVDAELARRSGSNLETERLMEEWKAN  190 (322)
Q Consensus       111 ~~GrIvIeL~~d~aP~tv~nF~~L~~~~~g~~Y~g~~f~Rvi~gfviQgGd~~~~~~~~~~~g~gg~~~~~~~~~E~~~~  190 (322)
                      ..|+|+||||.+.||+||+||++||+.+   ||+|+.||||+++|++||||+....        ++..++..+.+|..  
T Consensus         5 ~~G~i~ieL~~~~aP~t~~nF~~L~~~g---~Yd~~~fhRvi~~f~iQ~Gd~~~~~--------~~~~~~~~~~~e~~--   71 (155)
T cd01920           5 SLGDIVVELYDDKAPITVENFLAYVRKG---FYDNTIFHRVISGFVIQGGGFTPDL--------AQKETLKPIKNEAG--   71 (155)
T ss_pred             cceeEEEEEeCCCCcHHHHHHHHHHhcC---CCCCCEEEEEeCCcEEEeCCCCCCC--------CccccCCcccCccc--
Confidence            4999999999999999999999999999   9999999999999999999986321        11112233433321  


Q ss_pred             CCCCCCCCCCCCceeeeecCCCCCCcchhhhhccCcceeeccccCCCCCcceEEEEcCCCCCCCC-----CCcEEEEEEc
Q 020718          191 NERCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDA-----SSLVVGRVLE  265 (322)
Q Consensus       191 ~~~~~g~~~~~G~v~m~v~~~~~~~~~~~l~ar~G~l~m~~an~~p~s~gSqFfItl~~~p~LDg-----~~~VFGrVi~  265 (322)
                          ..+++.+|+|+|                       |+. .++++++|||||++++.++||+     +|+|||+|++
T Consensus        72 ----~~~~~~~G~v~m-----------------------a~~-~~~~s~~SqFfI~~~~~~~ld~~~~~~~ytvFG~V~e  123 (155)
T cd01920          72 ----NGLSNTRGTIAM-----------------------ART-NAPDSATSQFFINLKDNASLDYQNEQWGYTVFGEVTE  123 (155)
T ss_pred             ----ccccCCceEEEE-----------------------CCC-CCCCCccceEEEECCCchhcCCcccCCCccEEEEEec
Confidence                123566666666                       221 2489999999999999999995     7999999999


Q ss_pred             CHHHHHHHhcCccccCCCCCCcchhhhhccccchhhcccCCCCCCccEEEee
Q 020718          266 GMEVAEKIGEVKTVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTN  317 (322)
Q Consensus       266 Gmdvl~~I~~~~t~~~~~~~~~~~~~~~~gd~~~~~a~~~~~~P~~~V~I~~  317 (322)
                      |||||++|++++++...   |                  ..++|..+|+|.+
T Consensus       124 G~dvl~~I~~~~~~~~~---~------------------~~~~p~~~v~i~~  154 (155)
T cd01920         124 GMDVVDKIAGVETYSFG---S------------------YQDVPVQDVIIES  154 (155)
T ss_pred             CHHHHHHHHcCCccCCC---C------------------cCCCcCCCeEEEE
Confidence            99999999999997631   0                  0169999999975

coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding.

>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.2e-36  Score=286.83  Aligned_cols=157  Identities=20%  Similarity=0.407  Sum_probs=139.1

Q ss_pred             CCCceEEEEEEeCCeeeeeEEEEecCCCCChhHHHHHHHhcCCCcccccCcEEEEeccCeeEeeCccccCcccccccCCC
Q 020718           96 DPTKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHGGVRSYGVDAELARRSG  175 (322)
Q Consensus        96 ~~~~~v~~di~i~g~~~GrIvIeL~~d~aP~tv~nF~~L~~~~~g~~Y~g~~f~Rvi~gfviQgGd~~~~~~~~~~~g~g  175 (322)
                      .+..+-|+.+.   +..|.+-|||+.|.+|++|+||++||+.|   ||+|+.|||.|.+||||||||+.       +|.|
T Consensus       273 rvKkkgyvrl~---Tn~G~lNlELhcd~~P~aceNFI~lc~~g---YYnnt~FHRsIrnFmiQGGDPTG-------TG~G  339 (518)
T KOG0883|consen  273 RVKKKGYVRLV---TNHGPLNLELHCDYAPRACENFITLCKNG---YYNNTIFHRSIRNFMIQGGDPTG-------TGRG  339 (518)
T ss_pred             cccccceEEEe---ccCCceeeEeecCcchHHHHHHHHHHhcc---cccchHHHHHHHHHeeeCCCCCC-------CCCC
Confidence            34455566555   55999999999999999999999999999   99999999999999999999973       7778


Q ss_pred             C-CCccccchhhhccCCCCCCCCCCCCCceeeeecCCCCCCcchhhhhccCcceeeccccCCCCCcceEEEEcCCCCCCC
Q 020718          176 S-NLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELD  254 (322)
Q Consensus       176 g-~~~~~~~~~E~~~~~~~~~g~~~~~G~v~m~v~~~~~~~~~~~l~ar~G~l~m~~an~~p~s~gSqFfItl~~~p~LD  254 (322)
                      | +++|..|.|||....     .|.-||+|+|                         +|+|+|+|||||||++..+-|||
T Consensus       340 GeSiWgKpFkDEf~~~l-----~H~gRGvlSM-------------------------ANsGpnTNgSQFFItyrsckhLd  389 (518)
T KOG0883|consen  340 GESIWGKPFKDEFCSNL-----SHDGRGVLSM-------------------------ANSGPNTNGSQFFITYRSCKHLD  389 (518)
T ss_pred             CccccCCccccccCCCC-----CcCCcceEee-------------------------ccCCCCCCCceEEEEecchhhcc
Confidence            7 999999999985432     2556666666                         79999999999999999999999


Q ss_pred             CCCcEEEEEEcCHHHHHHHhcCccccCCCCCCcchhhhhccccchhhcccCCCCCCccEEEeeeee
Q 020718          255 ASSLVVGRVLEGMEVAEKIGEVKTVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNCGL  320 (322)
Q Consensus       255 g~~~VFGrVi~Gmdvl~~I~~~~t~~~~~~~~~~~~~~~~gd~~~~~a~~~~~~P~~~V~I~~cG~  320 (322)
                      ++|++|||||-|+|+|.+|+.+++++.                         ++|..+|+|.+.-|
T Consensus       390 ~KHTIFGrvVGGldtL~amEnve~d~~-------------------------DrP~e~I~i~~~~V  430 (518)
T KOG0883|consen  390 NKHTIFGRVVGGLDTLTAMENVETDEK-------------------------DRPKEEIKIEDAIV  430 (518)
T ss_pred             ccceeeeeeeccHHHHHHHhcCCCCCC-------------------------CCcccceEEeeeEE
Confidence            999999999999999999999999997                         79999999998765

>KOG0884 consensus Similar to cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=6.3e-36  Score=244.15  Aligned_cols=143  Identities=21%  Similarity=0.443  Sum_probs=131.5

Q ss_pred             eeeEEEEecCCCCChhHHHHHHHhcCCCcccccCcEEEEeccCeeEeeCccccCcccccccCCCC-CCccccchhhhccC
Q 020718          112 AGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHGGVRSYGVDAELARRSGS-NLETERLMEEWKAN  190 (322)
Q Consensus       112 ~GrIvIeL~~d~aP~tv~nF~~L~~~~~g~~Y~g~~f~Rvi~gfviQgGd~~~~~~~~~~~g~gg-~~~~~~~~~E~~~~  190 (322)
                      .|+|.||||.+.+|++|+||+.||...   ||+|+.|||-++||++|+||+..       .|.|| +++|..|.+||...
T Consensus         9 ~gdikiev~~e~tpktce~~l~~~~~~---~~n~~~~~~~~~~f~v~~~~~~~-------tgrgg~siwg~~fede~~~~   78 (161)
T KOG0884|consen    9 VGDIKIEVFCERTPKTCENFLALCASD---YYNGCIFHRNIKGFMVQTGDPTH-------TGRGGNSIWGKKFEDEYSEY   78 (161)
T ss_pred             cCcEEEEEEecCChhHHHHHHHHhhhh---hccceeecCCCCCcEEEeCCCCC-------CCCCCccccCCcchHHHHHH
Confidence            899999999999999999999999999   99999999999999999999974       56776 99999999999765


Q ss_pred             CCCCCCCCCCCCceeeeecCCCCCCcchhhhhccCcceeeccccCCCCCcceEEEEcCCCCCCCCCCcEEEEEEcCHHHH
Q 020718          191 NERCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVA  270 (322)
Q Consensus       191 ~~~~~g~~~~~G~v~m~v~~~~~~~~~~~l~ar~G~l~m~~an~~p~s~gSqFfItl~~~p~LDg~~~VFGrVi~Gmdvl  270 (322)
                      ..     |+.||+|+|                         +|.+||+|+||||||++..+|||=+|+|||+||+|+|.|
T Consensus        79 lk-----h~~rg~vsm-------------------------anngp~tn~sqffity~kq~hldmkytvfgkvidg~etl  128 (161)
T KOG0884|consen   79 LK-----HNVRGVVSM-------------------------ANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETL  128 (161)
T ss_pred             Hh-----hccceeEEc-------------------------ccCCCCCCCceEEEEecCCCccceeEeeeeeeccchhhH
Confidence            43     788888888                         789999999999999999999999999999999999999


Q ss_pred             HHHhcCccccCCCCCCcchhhhhccccchhhcccCCCCCCccEEEeee
Q 020718          271 EKIGEVKTVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNC  318 (322)
Q Consensus       271 ~~I~~~~t~~~~~~~~~~~~~~~~gd~~~~~a~~~~~~P~~~V~I~~c  318 (322)
                      +.|+.+++++..                        .||+.++.|.+-
T Consensus       129 dele~l~v~~kt------------------------yrpl~~~~ik~i  152 (161)
T KOG0884|consen  129 DELEKLPVNEKT------------------------YRPLNDVHIKDI  152 (161)
T ss_pred             HHHhhcccCccc------------------------cccchheeeeee
Confidence            999999998864                        789888888764

>PF00160 Pro_isomerase: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; InterPro: IPR002130 Cyclophilin [] is the major high-affinity binding protein in vertebrates for the immunosuppressive drug cyclosporin A (CSA), but is also found in other organisms

Probab=100.00  E-value=3.4e-35  Score=253.05  Aligned_cols=155  Identities=34%  Similarity=0.584  Sum_probs=123.3

Q ss_pred             EEEEEeCCeeeeeEEEEecCCCCChhHHHHHHHhcCCCcccccCcEEEEeccCeeEeeCccccCcccccccCCCCCCccc
Q 020718          102 FLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHGGVRSYGVDAELARRSGSNLETE  181 (322)
Q Consensus       102 ~~di~i~g~~~GrIvIeL~~d~aP~tv~nF~~L~~~~~g~~Y~g~~f~Rvi~gfviQgGd~~~~~~~~~~~g~gg~~~~~  181 (322)
                      ||+|++++  .|+|+||||.+.||++|+||++||+.+   +|+|+.|||+++++++|+|++......    +......+.
T Consensus         1 ~~~i~t~~--~G~i~ieL~~~~aP~~~~nF~~l~~~~---~y~g~~f~ri~~~~~i~~G~~~~~~~~----~~~~~~~~~   71 (155)
T PF00160_consen    1 FVDIETSG--LGRIVIELFGDEAPKTVENFLRLCTSG---FYDGTKFHRIIPNFVIQGGDPTGNGGY----GREDSTGGE   71 (155)
T ss_dssp             EEEEEETT--EEEEEEEEETTTSHHHHHHHHHHHHTT---SSTTEBEEEEETTTEEEESSTTTSSSS----TSEEBTTBS
T ss_pred             CEEEEeCC--ccCEEEEEeCCCCcHHHHhhehhhccc---ccCCceeecccccceeeeeeccCCCCc----ccccccCcc
Confidence            78888766  999999999999999999999999999   999999999999999999997643110    000011122


Q ss_pred             cchhhhccCCCCCCCCCCCCCceeeeecCCCCCCcchhhhhccCcceeeccccCCCCCcceEEEEcCCCCCCCCCCcEEE
Q 020718          182 RLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVG  261 (322)
Q Consensus       182 ~~~~E~~~~~~~~~g~~~~~G~v~m~v~~~~~~~~~~~l~ar~G~l~m~~an~~p~s~gSqFfItl~~~p~LDg~~~VFG  261 (322)
                      .+++|+...     .+.+.+|+|+|.                       +...++++++|||||++.+.++||++|+|||
T Consensus        72 ~~~~E~~~~-----~~~~~~G~v~~~-----------------------~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG  123 (155)
T PF00160_consen   72 PIPDEFNPS-----LLKHRRGLVSMA-----------------------RSGKDPNSNGSQFFITLSDAPHLDGKYTVFG  123 (155)
T ss_dssp             CBSSSGBTT-----SSSSSTTEEEEE-----------------------BSSSSTTEBSSEEEEESSCGGGGTTTSEEEE
T ss_pred             ccccccccc-----cccccceeeeec-----------------------ccccCCCCCCceEEeeccCCCccccceeeee
Confidence            355554211     234566776662                       2223478899999999999999999999999


Q ss_pred             EEEcCHHHHHHHhcCccccCCCCCCcchhhhhccccchhhcccCCCCCCccEEEeeeee
Q 020718          262 RVLEGMEVAEKIGEVKTVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNCGL  320 (322)
Q Consensus       262 rVi~Gmdvl~~I~~~~t~~~~~~~~~~~~~~~~gd~~~~~a~~~~~~P~~~V~I~~cG~  320 (322)
                      +|++|||+|++|++++++                           ++|.++|+|.+|||
T Consensus       124 ~V~~G~~vl~~i~~~~~~---------------------------~~p~~~v~I~~cgv  155 (155)
T PF00160_consen  124 RVIEGMDVLDKIEAGPTD---------------------------ERPKQDVTISSCGV  155 (155)
T ss_dssp             EEEEHHHHHHHHHTSBBT---------------------------TEBSSTEEEEEEEE
T ss_pred             EEehhHHHHHHHHCCCCC---------------------------CccCCCeEEEEeEC
Confidence            999999999999998775                           38999999999997

It exhibits a peptidyl-prolyl cis-trans isomerase activity (5.2.1.8 from EC) (PPIase or rotamase). PPIase is an enzyme that accelerates protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides []. It is probable that CSA mediates some of its effects via an forming a tight complex with cyclophilin that inhibits the phosphatase activity of calcineurin [], []. Cyclophilin A is a cytosolic and highly abundant protein. The protein belongs to a family of isozymes, including cyclophilins B and C, and natural killer cell cyclophilin-related protein [, , ]. Major isoforms have been found throughout the cell, including the ER, and some are even secreted. The sequences of the different forms of cyclophilin-type PPIases are well conserved. Note: FKBP's, a family of proteins that bind the immunosuppressive drug FK506, are also PPIases, but their sequence is not at all related to that of cyclophilin (see IPR001179 from INTERPRO).; GO: 0003755 peptidyl-prolyl cis-trans isomerase activity, 0006457 protein folding; PDB: 1Z81_A 1IHG_A 1IIP_A 3PMP_B 3O7T_A 2B71_A 1QNG_A 1QNH_A 2HQJ_A 2RMC_G ....

>KOG0865 consensus Cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=6.8e-36  Score=260.19  Aligned_cols=162  Identities=29%  Similarity=0.587  Sum_probs=146.0

Q ss_pred             CCceEEEEEEeCCeeeeeEEEEecCCCCChhHHHHHHHhcCCCcccccCcEEEEe---ccCeeEeeCccccCcccccccC
Q 020718           97 PTKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKI---MPNYVQHGGVRSYGVDAELARR  173 (322)
Q Consensus        97 ~~~~v~~di~i~g~~~GrIvIeL~~d~aP~tv~nF~~L~~~~~g~~Y~g~~f~Rv---i~gfviQgGd~~~~~~~~~~~g  173 (322)
                      .+++||||++++++++||++++|+.|..|+|++||..||++.+++.|++..|||+   +++||+||||++..      ++
T Consensus         2 ~~~~vf~d~~~~~~p~gr~~~~l~ad~~Pktaenf~al~tgekg~~yk~s~fhr~~~~~~~fm~qggDft~h------ng   75 (167)
T KOG0865|consen    2 VNPTVFFDIAIDGEPLGRIVFELFADKIPKTAENFRALCTGEKGFGYKGSCFHRLIPIIPGFMCQGGDFTCH------NG   75 (167)
T ss_pred             CCCeeeeeeeecCccccccceecccccCcchHhhhhhcccCCCccccccchhhhccccccceeeccCccccc------CC
Confidence            3679999999999999999999999999999999999999999999999999993   44799999999765      78


Q ss_pred             CCC-CCccccchhhhccCCCCCCCCCCCCCceeeeecCCCCCCcchhhhhccCcceeeccccCCCCCcceEEEEcCCCCC
Q 020718          174 SGS-NLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPE  252 (322)
Q Consensus       174 ~gg-~~~~~~~~~E~~~~~~~~~g~~~~~G~v~m~v~~~~~~~~~~~l~ar~G~l~m~~an~~p~s~gSqFfItl~~~p~  252 (322)
                      +|+ ++|+++|++|.+..+|..|      |.++|                         +|.+||+|||||||++....|
T Consensus        76 tggkSiy~ekF~DenFilkhtgp------GiLSm-------------------------aNagpntngsqffictaktew  124 (167)
T KOG0865|consen   76 TGGKSIYGEKFDDENFILKHTGP------GILSM-------------------------ANAGPNTNGSQFFICTAKTEW  124 (167)
T ss_pred             ccceEecccccCCcCcEEecCCC------Ceeeh-------------------------hhcCCCccccEEEEEcccccc
Confidence            888 8999999999888776432      44444                         789999999999999999999


Q ss_pred             CCCCCcEEEEEEcCHHHHHHHhcCccccCCCCCCcchhhhhccccchhhcccCCCCCCccEEEeeeeec
Q 020718          253 LDASSLVVGRVLEGMEVAEKIGEVKTVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNCGLM  321 (322)
Q Consensus       253 LDg~~~VFGrVi~Gmdvl~~I~~~~t~~~~~~~~~~~~~~~~gd~~~~~a~~~~~~P~~~V~I~~cG~l  321 (322)
                      ||++|+|||+|.+||+++++++......                          +++.++|+|.+||.|
T Consensus       125 LdgkhVVfGkv~eGm~iv~a~e~~gs~~--------------------------gk~~~~i~i~dcg~l  167 (167)
T KOG0865|consen  125 LDGKHVVFGKVKEGMDIVEAMERFGSRN--------------------------GKTSKKITIADCGQL  167 (167)
T ss_pred             ccCceeEcCceEcccchhhhhhccCCcC--------------------------CcccccEEEecCCcC
Confidence            9999999999999999999999977655                          899999999999986

>cd00317 cyclophilin cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases

Probab=100.00  E-value=1.3e-34  Score=247.20  Aligned_cols=141  Identities=33%  Similarity=0.560  Sum_probs=118.1

Q ss_pred             eeeEEEEecCCCCChhHHHHHHHhcCCCcccccCcEEEEeccCeeEeeCccccCcccccccCCCCCCccccchhhhccCC
Q 020718          112 AGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHGGVRSYGVDAELARRSGSNLETERLMEEWKANN  191 (322)
Q Consensus       112 ~GrIvIeL~~d~aP~tv~nF~~L~~~~~g~~Y~g~~f~Rvi~gfviQgGd~~~~~~~~~~~g~gg~~~~~~~~~E~~~~~  191 (322)
                      .|+|+||||.+.+|++|+||++||+++   +|+|+.|||++++|++|+||+...       ..+++.++..+++|.....
T Consensus         6 ~G~i~IeL~~~~~P~~~~nF~~l~~~~---~Y~~~~f~rv~~~~~iq~Gd~~~~-------~~~~~~~~~~~~~E~~~~~   75 (146)
T cd00317           6 KGRIVIELYGDEAPKTVENFLSLARGG---FYDGTTFHRVIPGFMIQGGDPTGT-------GGGGSGPGYKFPDENFPLK   75 (146)
T ss_pred             cCcEEEEEcCCCChHHHHHHHHHHhcC---CcCCCEEEEEeCCCeEEECCCCCC-------CCCCCcCCCccCCccccCc
Confidence            899999999999999999999999999   999999999999999999998643       1111233455665543322


Q ss_pred             CCCCCCCCCCCceeeeecCCCCCCcchhhhhccCcceeeccccCCCCCcceEEEEcCCCCCCCCCCcEEEEEEcCHHHHH
Q 020718          192 ERCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAE  271 (322)
Q Consensus       192 ~~~~g~~~~~G~v~m~v~~~~~~~~~~~l~ar~G~l~m~~an~~p~s~gSqFfItl~~~p~LDg~~~VFGrVi~Gmdvl~  271 (322)
                           .++.+|+|+|                         ++.++++++|||||++.+.++||++|+|||||++|||+|+
T Consensus        76 -----~~~~~G~v~~-------------------------~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~V~~G~~vl~  125 (146)
T cd00317          76 -----YHHRRGTLSM-------------------------ANAGPNTNGSQFFITTAPTPHLDGKHTVFGKVVEGMDVVD  125 (146)
T ss_pred             -----CcCCCcEEEE-------------------------eeCCCCCcccEEEEECCCCcccCCCceEEEEEeCCHHHHH
Confidence                 1566777777                         3345778899999999999999999999999999999999


Q ss_pred             HHhcCccccCCCCCCcchhhhhccccchhhcccCCCCCCccEEEee
Q 020718          272 KIGEVKTVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTN  317 (322)
Q Consensus       272 ~I~~~~t~~~~~~~~~~~~~~~~gd~~~~~a~~~~~~P~~~V~I~~  317 (322)
                      +|++.+++++                         ++|.++|+|.+
T Consensus       126 ~I~~~~~~~~-------------------------~~P~~~i~I~~  146 (146)
T cd00317         126 KIERGDTDEN-------------------------GRPIKPVTISD  146 (146)
T ss_pred             HHHcCCCCCC-------------------------CcCcCceEEeC
Confidence            9999999876                         89999999974

This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug cyclosporin (CsA). Immunosuppression in vertebrates is believed to be the result of the cyclophilin A-cyclosporin protein drug complex binding to and inhibiting the protein-phosphatase calcineurin. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. Cyclophilins are a diverse family in terms of function and have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. This group contains human cyclophilin 40, a co-chaperone of the hsp90 chaperone system; human cyclophilin A, a chaperone in the HIV-1 infectious process and; human cyclophilin H, a component of the U4/U6 snRNP

>cd01924 cyclophilin_TLP40_like cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40

Probab=100.00  E-value=5.1e-33  Score=245.69  Aligned_cols=154  Identities=21%  Similarity=0.286  Sum_probs=103.4

Q ss_pred             eeeeeEEEEecCCCCChhHHHHHHHhcCCCcccccCcEEEEeccCeeEeeCccccCcccccccCCCCCCccccchhhhcc
Q 020718          110 KSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHGGVRSYGVDAELARRSGSNLETERLMEEWKA  189 (322)
Q Consensus       110 ~~~GrIvIeL~~d~aP~tv~nF~~L~~~~~g~~Y~g~~f~Rvi~gfviQgGd~~~~~~~~~~~g~gg~~~~~~~~~E~~~  189 (322)
                      +..|+|+||||++.||+||+||++||+.+   ||+++.||||+++||+||||+............+..   ..++.|+..
T Consensus         4 T~~G~i~ieL~~~~aP~t~~NF~~L~~~g---~Ydg~~FhRVi~~fviQgGdp~~~~~~~~~~~~~~~---~~~p~e~~~   77 (176)
T cd01924           4 TDNGTITIVLDGYNAPVTAGNFVDLVERG---FYDGMEFHRVEGGFVVQTGDPQGKNPGFPDPETGKS---RTIPLEIKP   77 (176)
T ss_pred             cccceEEEEEcCCCCCHHHHHHHHHHHhC---CcCCCEEEEecCCcEEEecCCCCCCCCccccccccc---ccccceecc
Confidence            46999999999999999999999999999   999999999999999999998642110000000000   111222111


Q ss_pred             CCCCCCCCCCCCCc-eeeeecCCCCCCcchhhhhccCcceeeccccCCCCCcceEEEEcC-------CCCCCCCCCcEEE
Q 020718          190 NNERCPGTKNLAGT-VGIIVRDPSKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTK-------DSPELDASSLVVG  261 (322)
Q Consensus       190 ~~~~~~g~~~~~G~-v~m~v~~~~~~~~~~~l~ar~G~l~m~~an~~p~s~gSqFfItl~-------~~p~LDg~~~VFG  261 (322)
                      .....+    ..|. +..+..+   .....++++++|.|+|++....+|+++|||||+++       ..++||++|+|||
T Consensus        78 ~~~~~~----~~~~~~~~~~~~---~~~~~~~~~~~G~laMa~~~~~~ns~~SQFfI~~~~~~~~~~~~~~Ldg~ytVFG  150 (176)
T cd01924          78 EGQKQP----VYGKTLEEAGRY---DEQPVLPFNAFGAIAMARTEFDPNSASSQFFFLLKDNELTPSRNNVLDGRYAVFG  150 (176)
T ss_pred             cCCCCC----ccCccccccccc---ccccccccCCCCeEEEccCCCCCCCccceEEEEeccccccCCCCCccCCCceEEE
Confidence            100000    0000 0000000   11122445677777776544447999999999998       7899999999999


Q ss_pred             EEEcCHHHHHHHhcC
Q 020718          262 RVLEGMEVAEKIGEV  276 (322)
Q Consensus       262 rVi~Gmdvl~~I~~~  276 (322)
                      ||++|||||++|+..
T Consensus       151 ~VveG~dvl~~I~~g  165 (176)
T cd01924         151 YVTDGLDILRELKVG  165 (176)
T ss_pred             EEecCHHHHHhhcCC
Confidence            999999999999764

Compared to the archetypal cyclophilin Human cyclophilin A, these proteins have similar peptidylprolyl cis- trans isomerase activity and reduced affinity for cyclosporin A. Spinach TLP40 has been shown to have a dual function as a folding catalyst and regulator of dephosphorylation.

>KOG0885 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=2.7e-32  Score=258.01  Aligned_cols=158  Identities=24%  Similarity=0.469  Sum_probs=140.1

Q ss_pred             CCCCCceEEEEEEeCCeeeeeEEEEecCCCCChhHHHHHHHhcCCCcccccCcEEEEeccCeeEeeCccccCcccccccC
Q 020718           94 NKDPTKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHGGVRSYGVDAELARR  173 (322)
Q Consensus        94 ~~~~~~~v~~di~i~g~~~GrIvIeL~~d~aP~tv~nF~~L~~~~~g~~Y~g~~f~Rvi~gfviQgGd~~~~~~~~~~~g  173 (322)
                      .+..+.+|.+.++     .|+|.|||++..||++|.||++||..|   ||+|+.|||++|||++|||||+       ++|
T Consensus         8 EP~ttgkvil~TT-----~G~I~iELW~kE~P~acrnFiqKOGeg---yy~nt~fhrlvp~f~~Qggdp~-------~~g   72 (439)
T KOG0885|consen    8 EPPTTGKVILKTT-----KGDIDIELWAKECPKACRNFIQLCLEG---YYDNTEFHRLVPGFLVQGGDPT-------GTG   72 (439)
T ss_pred             CCCccceEEEEec-----cCceeeeehhhhhhHHHHHHHHHHHhc---cccCceeeeeccchhcccCCCC-------CCC
Confidence            4556889999999     999999999999999999999999999   9999999999999999999997       378


Q ss_pred             CCC-CCccccchhhhccCCCCCCCCCCCCCceeeeecCCCCCCcchhhhhccCcceeeccccCCCCCcceEEEEcCCCCC
Q 020718          174 SGS-NLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPE  252 (322)
Q Consensus       174 ~gg-~~~~~~~~~E~~~~~~~~~g~~~~~G~v~m~v~~~~~~~~~~~l~ar~G~l~m~~an~~p~s~gSqFfItl~~~p~  252 (322)
                      +|| +|||..|.+|+.....     .+.+|+|||                         +|.+.+.|||||||||+++++
T Consensus        73 tGgesiyg~~fadE~h~Rlr-----f~rrGlvgm-------------------------ana~~~~ngsqFfftl~~~~e  122 (439)
T KOG0885|consen   73 TGGESIYGRPFADEFHPRLR-----FNRRGLVGM-------------------------ANAGNDDNGSQFFFTLGDTPE  122 (439)
T ss_pred             CCccccccccchhhcCccee-----eeccceeee-------------------------cccCCCCCCceEEEEecCChH
Confidence            888 9999999999864322     456777777                         566678999999999999999


Q ss_pred             CCCCCcEEEEEE-cCHHHHHHHhcCccccCCCCCCcchhhhhccccchhhcccCCCCCCccEEEeeeeec
Q 020718          253 LDASSLVVGRVL-EGMEVAEKIGEVKTVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNCGLM  321 (322)
Q Consensus       253 LDg~~~VFGrVi-~Gmdvl~~I~~~~t~~~~~~~~~~~~~~~~gd~~~~~a~~~~~~P~~~V~I~~cG~l  321 (322)
                      ||++|++||+|+ +-+-.+.+|..+.++.+                         .||...-.|.+|.|+
T Consensus       123 l~nk~tiFGKVtGdtIYn~lri~e~eida~-------------------------~Rp~~p~kI~s~EV~  167 (439)
T KOG0885|consen  123 LNNKHTIFGKVTGDTIYNMLRISEVEIDAD-------------------------DRPVDPPKIKSVEVL  167 (439)
T ss_pred             hcccCceeeeecchhhhhhhhhcccccccc-------------------------cCCCCccceeeeEee
Confidence            999999999999 56778899999999876                         799999999999886

>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=5.4e-30  Score=241.01  Aligned_cols=157  Identities=22%  Similarity=0.337  Sum_probs=130.5

Q ss_pred             EEEEEEeCCeeeeeEEEEecCCCCChhHHHHHHHhcCCCcccccCcEEEEeccCeeEeeCccccCcccccccCCCC-CCc
Q 020718          101 VFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHGGVRSYGVDAELARRSGS-NLE  179 (322)
Q Consensus       101 v~~di~i~g~~~GrIvIeL~~d~aP~tv~nF~~L~~~~~g~~Y~g~~f~Rvi~gfviQgGd~~~~~~~~~~~g~gg-~~~  179 (322)
                      |.++++     +|+|||.||-+..|.+|.||++||+-.   ||+.+.||-|..+|++|.|||+.       +|.|| ++|
T Consensus         3 VlieTt-----lGDlvIDLf~~erP~~clNFLKLCk~K---YYN~clfh~vq~~f~aQTGDPtG-------tG~GG~si~   67 (479)
T KOG0415|consen    3 VLIETT-----LGDLVIDLFVKERPRTCLNFLKLCKIK---YYNFCLFHTVQRDFTAQTGDPTG-------TGDGGESIY   67 (479)
T ss_pred             EEEEee-----cccEEeeeecccCcHHHHHHHHHHhHh---hcccceeeeccccceeecCCCCC-------CCCCcceee
Confidence            677777     999999999999999999999999999   99999999999999999999973       66666 666


Q ss_pred             cccch--hhhccCCCCCCCCCCCCCceeeeecCCCCCCcchhhhhccCcceeeccccCCCCCcceEEEEcCCC-CCCCCC
Q 020718          180 TERLM--EEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDS-PELDAS  256 (322)
Q Consensus       180 ~~~~~--~E~~~~~~~~~g~~~~~G~v~m~v~~~~~~~~~~~l~ar~G~l~m~~an~~p~s~gSqFfItl~~~-p~LDg~  256 (322)
                      +.-+.  ..|+.........|+..|+|+|                         .+.|.|.+||||||||++. .+|||+
T Consensus        68 ~~lyG~q~rffeaE~~p~l~Hsk~G~vsm-------------------------vs~g~n~~gSQF~iTlgenLdyLDg~  122 (479)
T KOG0415|consen   68 GVLYGEQARFFEAEFLPKLKHSKMGTVSM-------------------------VSAGENLNGSQFFITLGENLDYLDGK  122 (479)
T ss_pred             eecccccchhhhhhhcccccccccceEEe-------------------------ecCCcccccceEEEEccccccccccc
Confidence            54331  1122211111224667788887                         4677889999999999985 799999


Q ss_pred             CcEEEEEEcCHHHHHHHhcCccccCCCCCCcchhhhhccccchhhcccCCCCCCccEEEeeeeecC
Q 020718          257 SLVVGRVLEGMEVAEKIGEVKTVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNCGLME  322 (322)
Q Consensus       257 ~~VFGrVi~Gmdvl~~I~~~~t~~~~~~~~~~~~~~~~gd~~~~~a~~~~~~P~~~V~I~~cG~l~  322 (322)
                      |+|||+|.+|||+|.+|...-++.+                         ++|+++|.|..--+|+
T Consensus       123 htvfGqV~EG~dtl~kiNea~vD~~-------------------------~rPykdIRI~HTiiLd  163 (479)
T KOG0415|consen  123 HTVFGQVAEGFDTLTKINEAIVDPK-------------------------NRPYKDIRIKHTIILD  163 (479)
T ss_pred             cceeeehhhhHHHHHHHHHHhcCCC-------------------------CCcccceeeeeeEEec
Confidence            9999999999999999999999987                         8999999999877764

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=96.74  E-value=0.002  Score=64.15  Aligned_cols=134  Identities=15%  Similarity=0.155  Sum_probs=92.5

Q ss_pred             eeeEEEEecCCCCChhHHHHHHHhcCCCcccccCcEEEEeccCeeEeeCccccCcccccccCCCCCCccccchhh--hcc
Q 020718          112 AGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHGGVRSYGVDAELARRSGSNLETERLMEE--WKA  189 (322)
Q Consensus       112 ~GrIvIeL~~d~aP~tv~nF~~L~~~~~g~~Y~g~~f~Rvi~gfviQgGd~~~~~~~~~~~g~gg~~~~~~~~~E--~~~  189 (322)
                      .--|.|+++..-.|.-++-|.++|..+   ++++..|.||...+++|.||.-..      ...+|.+  +.+..|  |..
T Consensus       111 ~s~IAVs~~~sg~i~VvD~~~d~~q~~---~fkklH~sPV~~i~y~qa~Ds~vS------iD~~gmV--EyWs~e~~~qf  179 (558)
T KOG0882|consen  111 ISLIAVSLFKSGKIFVVDGFGDFCQDG---YFKKLHFSPVKKIRYNQAGDSAVS------IDISGMV--EYWSAEGPFQF  179 (558)
T ss_pred             eeeEEeecccCCCcEEECCcCCcCccc---eecccccCceEEEEeeccccceee------cccccee--EeecCCCcccC
Confidence            348999999999999999999999999   999999999999999999986422      1122211  111111  110


Q ss_pred             CCC-CCCCCCCCCCceeeeecCCCCCCcchhhhhccCcceeeccccCCCCCcceEEEEcCCCCCCCCCCcEEEEEEcCHH
Q 020718          190 NNE-RCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGME  268 (322)
Q Consensus       190 ~~~-~~~g~~~~~G~v~m~v~~~~~~~~~~~l~ar~G~l~m~~an~~p~s~gSqFfItl~~~p~LDg~~~VFGrVi~Gmd  268 (322)
                      ... ..-.+++..-+++++                         .......+-+|++.-...+-|..+..|||++.+|-+
T Consensus       180 Pr~~l~~~~K~eTdLy~f~-------------------------K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGk  234 (558)
T KOG0882|consen  180 PRTNLNFELKHETDLYGFP-------------------------KAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGK  234 (558)
T ss_pred             ccccccccccccchhhccc-------------------------ccccCccceEEccccCcccccCcccEEEEEEeccch
Confidence            000 000112222222221                         111233467899998888889999999999999999


Q ss_pred             HHHHHhcCccccC
Q 020718          269 VAEKIGEVKTVQE  281 (322)
Q Consensus       269 vl~~I~~~~t~~~  281 (322)
                      +++.|....++..
T Consensus       235 lvqeiDE~~t~~~  247 (558)
T KOG0882|consen  235 LVQEIDEVLTDAQ  247 (558)
T ss_pred             hhhhhhccchhhh
Confidence            9999999998875

>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3

Probab=94.61  E-value=0.14  Score=51.96  Aligned_cols=104  Identities=22%  Similarity=0.286  Sum_probs=60.6

Q ss_pred             eeEEEEecCCCCChhHHHHHHHhcCCCcccccCcEEEEeccCeeEeeCccccCcccccccCCCCCCccccchhhhccCCC
Q 020718          113 GRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHGGVRSYGVDAELARRSGSNLETERLMEEWKANNE  192 (322)
Q Consensus       113 GrIvIeL~~d~aP~tv~nF~~L~~~~~g~~Y~g~~f~Rvi~gfviQgGd~~~~~~~~~~~g~gg~~~~~~~~~E~~~~~~  192 (322)
                      =.+.+||.. .+|+.+++|+.+.+.|   .++   +.+...-|+.-.                 .+.+...+.|+...+ 
T Consensus       201 Ty~evE~~~-~~p~s~EH~la~~~~G---~~~---Vd~~tsTfi~d~-----------------~L~g~~~p~En~~~R-  255 (503)
T TIGR03268       201 TYVEVELDP-NAPVSVEHFLALMEDG---TFR---VDYRTSTFISDD-----------------SLRGLDKPEENIEKR-  255 (503)
T ss_pred             EEEEEEEcC-CCChhHHHHHHHHhCC---eEE---EeeeecceEecc-----------------cccCccCCccccCcc-
Confidence            356688866 6999999999999988   221   111111122110                 111233444443322 


Q ss_pred             CCCCCCCCCCceeeeecCCCCCCcchhhhhccCcceeeccccCCCCCcceEEEEcCCCCCCCCCCcEEEEEEcCHHHHHH
Q 020718          193 RCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEK  272 (322)
Q Consensus       193 ~~~g~~~~~G~v~m~v~~~~~~~~~~~l~ar~G~l~m~~an~~p~s~gSqFfItl~~~p~LDg~~~VFGrVi~Gmdvl~~  272 (322)
                             .+|+|.+                         .|.|..  .-.-||--.+-+ -.-.|+|+|+|+.|||+++-
T Consensus       256 -------~rGtVTV-------------------------Rn~G~G--~G~VYIYredr~-ss~sHtvVG~V~~GiELid~  300 (503)
T TIGR03268       256 -------RRGAVTV-------------------------RNSGVG--EGRVYIYREDRP-SSLSHNVVGHVTRGIELIDI  300 (503)
T ss_pred             -------cceeEEE-------------------------EeeccC--ceeEEEEcCCCC-CCcccceeEEEecceeeeec
Confidence                   3566655                         343332  335777666544 23479999999999999975


Q ss_pred             HhcC
Q 020718          273 IGEV  276 (322)
Q Consensus       273 I~~~  276 (322)
                      -+..
T Consensus       301 a~~G  304 (503)
T TIGR03268       301 AQEG  304 (503)
T ss_pred             ccCC
Confidence            5543

A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.

>PRK00969 hypothetical protein; Provisional

Probab=94.39  E-value=0.16  Score=51.57  Aligned_cols=104  Identities=23%  Similarity=0.297  Sum_probs=60.8

Q ss_pred             eeEEEEecCCCCChhHHHHHHHhcCCCcccccCcEEEEeccCeeEeeCccccCcccccccCCCCCCccccchhhhccCCC
Q 020718          113 GRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHGGVRSYGVDAELARRSGSNLETERLMEEWKANNE  192 (322)
Q Consensus       113 GrIvIeL~~d~aP~tv~nF~~L~~~~~g~~Y~g~~f~Rvi~gfviQgGd~~~~~~~~~~~g~gg~~~~~~~~~E~~~~~~  192 (322)
                      =.+.+||.. .+|..+++|+.+.+.|   .++   +.+...-|+.-.                 .+.|...+.|+...+ 
T Consensus       204 Ty~eve~~~-~~p~s~EH~la~~~~G---~f~---Vd~~tstfI~d~-----------------~L~g~~~p~En~~~R-  258 (508)
T PRK00969        204 TYVEVELDP-GAPKSVEHFLALLEDG---TFE---VDFETSTFIADD-----------------RLQGLKIPEENFEPR-  258 (508)
T ss_pred             EEEEEEEcC-CCCchHHHHHHHHhCC---eEE---EeeeecceEeec-----------------cccCccCCccccCcc-
Confidence            356678887 6999999999999988   221   111111121110                 111233444443322 


Q ss_pred             CCCCCCCCCCceeeeecCCCCCCcchhhhhccCcceeeccccCCCCCcceEEEEcCCCCCCCCCCcEEEEEEcCHHHHHH
Q 020718          193 RCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEK  272 (322)
Q Consensus       193 ~~~g~~~~~G~v~m~v~~~~~~~~~~~l~ar~G~l~m~~an~~p~s~gSqFfItl~~~p~LDg~~~VFGrVi~Gmdvl~~  272 (322)
                             .+|+|.+                         .|.|..  .-.-||--.+-+ -.-.|+|+|+|+.|||+++-
T Consensus       259 -------~~GtVTV-------------------------Rt~G~g--~G~vYIyredr~-ss~sHtvVG~V~~GiELi~~  303 (508)
T PRK00969        259 -------RRGTVTV-------------------------RTAGVG--VGKVYIYREDRP-SSLSHTVVGRVTHGIELIDF  303 (508)
T ss_pred             -------ccceEEE-------------------------EeeccC--ceeEEEECCCCC-CCccceeEEEEecceeeeec
Confidence                   4566665                         343332  335788766644 23479999999999999975


Q ss_pred             HhcC
Q 020718          273 IGEV  276 (322)
Q Consensus       273 I~~~  276 (322)
                      -+..
T Consensus       304 a~~G  307 (508)
T PRK00969        304 AKEG  307 (508)
T ss_pred             ccCC
Confidence            5543

>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3

Probab=94.25  E-value=0.31  Score=49.51  Aligned_cols=123  Identities=23%  Similarity=0.347  Sum_probs=64.4

Q ss_pred             eeEEEEecCCCCChhHHHHHHHhcCCCcccccCcEEEEeccCeeEeeCccccCcccccccCCCCCCccccchhhhccCCC
Q 020718          113 GRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHGGVRSYGVDAELARRSGSNLETERLMEEWKANNE  192 (322)
Q Consensus       113 GrIvIeL~~d~aP~tv~nF~~L~~~~~g~~Y~g~~f~Rvi~gfviQgGd~~~~~~~~~~~g~gg~~~~~~~~~E~~~~~~  192 (322)
                      --|.|+||.+.||+|+.-|+++.--... --=-..+|-..++.++.=|+..+          +     ..+.+|+..+. 
T Consensus       375 ~vi~IeLydd~AP~s~~yFRk~tGL~~~-~VG~L~v~F~~~d~~mFk~~~~~----------~-----k~LiPEN~P~~-  437 (503)
T TIGR03268       375 KVIEIELYDDNAPRSVWYFRKFTGLKTK-PVGRLPVHFAFKEMIMFKGNKEL----------A-----KGLIPENTPED-  437 (503)
T ss_pred             hEEEEEEcccCCchHHHHHHHhcCCccc-ccceeEEEEEeCCeeEeccCchh----------c-----cccCCCCCCCC-
Confidence            3588999999999999999997643310 00123455555554333333321          1     22333332222 


Q ss_pred             CCCCCCCCCCceeeeecCCCCCCcchhhhhccCcceeeccccCCCCCcceEEEEcCCC-CCCCCCCcEEEEEEcCHHHHH
Q 020718          193 RCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDS-PELDASSLVVGRVLEGMEVAE  271 (322)
Q Consensus       193 ~~~g~~~~~G~v~m~v~~~~~~~~~~~l~ar~G~l~m~~an~~p~s~gSqFfItl~~~-p~LDg~~~VFGrVi~Gmdvl~  271 (322)
                           .-.+|.+||-.          ....+-|++.+      .-+.+++|    ++. ..+++.+ ++|||+++||.|+
T Consensus       438 -----~V~ag~IgvTN----------~a~k~~G~IGV------Rl~d~def----GPTGE~F~gTN-IiG~Vv~~~e~Lk  491 (503)
T TIGR03268       438 -----KVEAGVIGVTN----------QACKHVGMIGV------RLEDSDEF----GPTGEPFSGTN-IIGRVVEGMERLK  491 (503)
T ss_pred             -----ccccceEeeec----------hhhhcCceEEE------EccCCccc----CCCCCCccCcc-eEEEecCChhHhc
Confidence                 22355565521          00012233222      00112232    332 3466655 5699999999999


Q ss_pred             HHhcCcc
Q 020718          272 KIGEVKT  278 (322)
Q Consensus       272 ~I~~~~t  278 (322)
                      ++....+
T Consensus       492 ~~KeGd~  498 (503)
T TIGR03268       492 GLKEGDT  498 (503)
T ss_pred             ccccCce
Confidence            9887543

A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.

>PRK00969 hypothetical protein; Provisional

Probab=92.77  E-value=0.73  Score=46.98  Aligned_cols=120  Identities=22%  Similarity=0.320  Sum_probs=64.7

Q ss_pred             eeEEEEecCCCCChhHHHHHHHhcCCCccccc--CcEEEEeccCeeEeeCccccCcccccccCCCCCCccccchhhhccC
Q 020718          113 GRIVIGLYGDSAPAGAARFSSLVSGTAGISYR--RKEFIKIMPNYVQHGGVRSYGVDAELARRSGSNLETERLMEEWKAN  190 (322)
Q Consensus       113 GrIvIeL~~d~aP~tv~nF~~L~~~~~g~~Y~--g~~f~Rvi~gfviQgGd~~~~~~~~~~~g~gg~~~~~~~~~E~~~~  190 (322)
                      --|.||||.+.||+|+.-|+++.--.   +..  -..+|-..++.++.=|+..+          .     ..+.+|+..+
T Consensus       378 ~vi~IeLydd~AP~s~~yFR~~tGL~---~~~VG~L~v~F~~~d~~lFk~~~~~----------~-----k~liPEN~P~  439 (508)
T PRK00969        378 KLIEIELYDDKAPRTVWYFRKVTGLK---TKPVGKLPVYFKYEDTYLFKGNIEY----------A-----KGLLPENTPE  439 (508)
T ss_pred             HEEEEEEcCcCCchHHHHHHHhcCCc---ccccceeEEEEEeCCeEEEccChhh----------c-----cccCCCCCCC
Confidence            35889999999999999999986543   111  23455556664444444321          1     2233333322


Q ss_pred             CCCCCCCCCCCCceeeeecCCCCCCcchhhhhccCcceeeccccCCCCCcceEEEEcCCC-CCCCCCCcEEEEEEcCHHH
Q 020718          191 NERCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDS-PELDASSLVVGRVLEGMEV  269 (322)
Q Consensus       191 ~~~~~g~~~~~G~v~m~v~~~~~~~~~~~l~ar~G~l~m~~an~~p~s~gSqFfItl~~~-p~LDg~~~VFGrVi~Gmdv  269 (322)
                      .      .-.+|.+||-.          ....+-|++.+      .-+.+.+|    ++. ..+++.+ ++|||+ ++|-
T Consensus       440 ~------~V~ag~IgvTN----------~a~k~~G~iGV------R~~d~d~f----GPTGE~F~gTN-IIGrVv-~~e~  491 (508)
T PRK00969        440 D------KVKAGEIGVTN----------MAAKYKGMIGV------RLSDNDEF----GPTGEPFEGTN-IIGRVV-NLEK  491 (508)
T ss_pred             C------ccccceEeeec----------hhhhcCceEEE------EccCCccc----CCCCCCccCce-eEEEec-ChHH
Confidence            2      23455565521          00122233322      00112222    332 3456544 789999 9999


Q ss_pred             HHHHhcCcc
Q 020718          270 AEKIGEVKT  278 (322)
Q Consensus       270 l~~I~~~~t  278 (322)
                      |+++....+
T Consensus       492 Lk~lKeGd~  500 (508)
T PRK00969        492 LKKLKEGDT  500 (508)
T ss_pred             hcccccCCe
Confidence            998887544

>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]

Probab=92.69  E-value=0.27  Score=48.54  Aligned_cols=102  Identities=26%  Similarity=0.377  Sum_probs=59.6

Q ss_pred             eeEEEEecCCCCChhHHHHHHHhcCCC-cccccCcEEEEeccCeeEeeCccccCcccccccCCCCCCccccchhhhccCC
Q 020718          113 GRIVIGLYGDSAPAGAARFSSLVSGTA-GISYRRKEFIKIMPNYVQHGGVRSYGVDAELARRSGSNLETERLMEEWKANN  191 (322)
Q Consensus       113 GrIvIeL~~d~aP~tv~nF~~L~~~~~-g~~Y~g~~f~Rvi~gfviQgGd~~~~~~~~~~~g~gg~~~~~~~~~E~~~~~  191 (322)
                      -.+.+||.. .+|+.+++|++|.+.|. .+-|+-.+|       +-   |-              ++.+++++.|+.+..
T Consensus       203 Ty~eve~s~-nsP~saEH~lalmedG~lri~~~tntf-------is---~~--------------~lq~~~~~~en~d~R  257 (512)
T COG4070         203 TYFEVELSR-NSPKSAEHFLALMEDGTLRIDVTTNTF-------IS---DD--------------TLQEEKVPEENFDLR  257 (512)
T ss_pred             EEEEEEeCC-CCchhHHHHHHHhhcceEEEEEeccce-------ee---cc--------------ccccccCChhhhhhh
Confidence            456788888 69999999999999882 111222122       11   10              112244555555433


Q ss_pred             CCCCCCCCCCCceeeeecCCCCCCcchhhhhccCcceeeccccCCCCCcceEEEEcCCCCCCCCCCcEEEEEEcCHHHHH
Q 020718          192 ERCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAE  271 (322)
Q Consensus       192 ~~~~g~~~~~G~v~m~v~~~~~~~~~~~l~ar~G~l~m~~an~~p~s~gSqFfItl~~~p~LDg~~~VFGrVi~Gmdvl~  271 (322)
                              .+|.+.+                         .|.|-+  .-.-||--.+-+ ---.|.|+|||++|||+++
T Consensus       258 --------erG~iTv-------------------------Rn~Gvg--eGrvYIyRedR~-ss~sHnvVGrV~eGiELid  301 (512)
T COG4070         258 --------ERGAITV-------------------------RNVGVG--EGRVYIYREDRP-SSLSHNVVGRVIEGIELID  301 (512)
T ss_pred             --------hcceEEE-------------------------Eeeecc--cceEEEEecCCC-CccccceeeeeecceEEEE
Confidence                    3455544                         233322  335677665533 2237899999999999987


Q ss_pred             HHhc
Q 020718          272 KIGE  275 (322)
Q Consensus       272 ~I~~  275 (322)
                      --..
T Consensus       302 ~a~e  305 (512)
T COG4070         302 LAEE  305 (512)
T ss_pred             eccc
Confidence            5544

>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]

Probab=91.65  E-value=0.62  Score=46.14  Aligned_cols=40  Identities=20%  Similarity=0.154  Sum_probs=27.7

Q ss_pred             eEEEEecCCCCChhHHHHHHHhcCCCcccccCcEEEEeccC
Q 020718          114 RIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPN  154 (322)
Q Consensus       114 rIvIeL~~d~aP~tv~nF~~L~~~~~g~~Y~g~~f~Rvi~g  154 (322)
                      -|+||||.+.||+++..|+.+..-... ---..+.|-..++
T Consensus       377 iieIELyed~APrSv~yFRr~t~l~~k-pVGkL~Vhfay~d  416 (512)
T COG4070         377 IIEIELYEDRAPRSVWYFRRSTGLKTK-PVGKLKVHFAYDD  416 (512)
T ss_pred             EEEEEecCCCCchhhHHHHhhcccccc-cccceEEEEEeCC
Confidence            589999999999999999997643310 0113455555555

>PF12903 DUF3830: Protein of unknown function (DUF3830); InterPro: IPR024532 This is a family of bacterial and archaeal proteins

Probab=80.88  E-value=9.2  Score=33.06  Aligned_cols=35  Identities=20%  Similarity=0.212  Sum_probs=25.3

Q ss_pred             eEEEEecCCCCChhHHHHHHHhcCCCcccccCcEEEEeccC
Q 020718          114 RIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPN  154 (322)
Q Consensus       114 rIvIeL~~d~aP~tv~nF~~L~~~~~g~~Y~g~~f~Rvi~g  154 (322)
                      .++.+|..|.||+||+-|.++-  -    |.+..+|-..-|
T Consensus         9 ~~~A~l~~d~AP~Tcaa~~~~L--P----~~~~~~HarwSG   43 (147)
T PF12903_consen    9 SFTARLLDDKAPKTCAAFWEAL--P----LKGKVIHARWSG   43 (147)
T ss_dssp             EEEEEE-TTTSHHHHHHHHHH--------EEEE-EE-SSSS
T ss_pred             EEEEEEcccCChHHHHHHHHhC--C----CCCcEEEEEEEC
Confidence            4789999999999999999976  2    667777776666

The structure of one of family members, A0JVT3 from SWISSPROT, has been characterised and shown to contain a cyclophilin-like fold.; PDB: 3KOP_B.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	322
2hqj_A	183	Cyclophilin From Leishmania Major Length = 183		4e-15
3ich_A	188	Crystal Structure Of Cyclophilin B At 1.2 A Resolut		2e-14
1cyn_A	178	Cyclophilin B Complexed With [d-(Cholinylester)ser8		2e-14
4frv_A	185	Crystal Structure Of Mutated Cyclophilin B That Cau		3e-14
4fru_A	185	Crystal Structure Of Horse Wild-Type Cyclophilin B		3e-14
3bt8_A	172	Crystal Structure Of Mutant Cyclophilin (R147a) Fro		1e-13
2haq_A	172	Crystal Structure Of Cyclophilin A From Leishmania		3e-13
1h0p_A	182	Cyclophilin_5 From C. Elegans Length = 182		1e-12
1xo7_A	166	Crystal Structure Of Cyclophilin From Trypanosoma C		1e-12
1dyw_A	173	Biochemical And Structural Characterization Of A Di		1e-12
1c5f_A	177	Crystal Structure Of The Cyclophilin-Like Domain Fr		2e-12
2rmc_A	182	Crystal Structure Of Murine Cyclophilin C Complexed		8e-12
2esl_A	190	Human Cyclophilin C In Complex With Cyclosporin A L		2e-11
3k0r_A	165	Cryogenic Structure Of Cypa Mutant Arg55lys Length		2e-11
2x25_B	169	Free Acetyl-Cypa Orthorhombic Form Length = 169		3e-11
2rma_A	165	Crystal Structures Of Cyclophilin A Complexed With		4e-11
1bck_A	165	Human Cyclophilin A Complexed With 2-Thr Cyclospori		4e-11
5cyh_A	164	Cyclophilin A Complexed With Dipeptide Gly-Pro Leng		4e-11
2x2a_A	165	Free Acetyl-Cypa Trigonal Form Length = 165		4e-11
2x2c_K	165	Acetyl-Cypa:cyclosporine Complex Length = 165		4e-11
3k0o_A	165	Room Temperature Structure Of Cypa Mutant Ser99thr		4e-11
1m9e_A	164	X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-		4e-11
3rdd_A	184	Human Cyclophilin A Complexed With An Inhibitor Len		4e-11
2xgy_B	173	Complex Of Rabbit Endogenous Lentivirus (Relik)caps		4e-11
3pmp_A	164	Crystal Structure Of Cyclophilin A From Moniliophth		5e-11
3o7t_A	164	Crystal Structure Of Cyclophilin A From Moniliophth		5e-11
4dgd_A	165	Trimcyp Cyclophilin Domain From Macaca Mulatta: H70		5e-11
3r49_A	166	Human Cyclophilin D Complexed With Quinolin-8-Amine		7e-11
1ist_A	162	Crystal Structure Of Yeast Cyclophilin A, Cpr1 Leng		7e-11
2bit_X	165	Crystal Structure Of Human Cyclophilin D At 1.7 A R		7e-11
2z6w_A	165	Crystal Structure Of Human Cyclophilin D In Complex		7e-11
3qyu_A	164	Crystal Structure Of Human Cyclophilin D At 1.54 A		7e-11
2wlw_A	165	Structure Of The N-Terminal Capsid Domain Of Hiv-2		8e-11
2x83_B	163	Evolutionary Basis Of Hiv Restriction By The Antire		1e-10
2alf_A	164	Crystal Structure Of Human Cypa Mutant K131a Length		1e-10
2wfi_A	179	Atomic Resolution Crystal Structure Of The Ppiase D		1e-10
2gw2_A	198	Crystal Structure Of The Peptidyl-Prolyl Isomerase		1e-10
2wfj_A	179	Atomic Resolution Crystal Structure Of The Ppiase D		1e-10
2plu_A	186	Crystal Structure Of Cryptosporidium Parvum Cycloph		6e-10
1aws_A	164	Secypa Complexed With Hagpia (Pseudo-Symmetric Mono		7e-10
4i9y_A	167	Structure Of The C-terminal Domain Of Nup358 Length		1e-09
2ck1_A	172	The Structure Of Oxidised Cyclophilin A From S. Man		5e-09
1ihg_A	370	Bovine Cyclophilin 40, Monoclinic Form Length = 370		1e-08
2cfe_A	162	The 1.5 A Crystal Structure Of The Malassezia Sympo		2e-08
2he9_A	192	Structure Of The Peptidylprolyl Isomerase Domain Of		2e-08
1qnh_A	170	Plasmodium Falciparum Cyclophilin (Double Mutant) C		5e-08
1qng_A	170	Plasmodium Falciparum Cyclophilin Complexed With Cy		5e-08
3k2c_A	193	Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isom		7e-08
1zmf_A	165	C Domain Of Human Cyclophilin-33(Hcyp33) Length = 1		6e-07
2r99_A	173	Crystal Structure Of Cyclophilin Abh-Like Domain Of		8e-07
1qoi_A	177	U4U6 SNRNP-Specific Cyclophilin Snucyp-20 Length =		6e-06
3uch_A	174	Crystal Structure Of A Hypotherical Peptidyl-Prolyl		1e-05
2ose_A	234	Crystal Structure Of The Mimivirus Cyclophilin Leng		6e-05
2a2n_A	176	Crystal Structure Of The Peptidylprolyl Isomerase D		1e-04

>pdb|2HQJ|A Chain A, Cyclophilin From Leishmania Major Length = 183

Iteration: 1
 Score = 78.6 bits (192), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 53/181 (29%), Positives = 82/181 (45%), Gaps = 40/181 (22%)
Query: 100 RVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAG-------ISYRRKEFIKIM 152
           +VF DISID K+AGRIV+ LY D+ P  A  F +L +G  G       + Y+   F +++
Sbjct: 9   KVFFDISIDNKAAGRIVMELYADTVPKTAENFRALCTGEKGKGRSGKPLHYKSSVFHRVI 68
Query: 153 PNYVQHGGVRSYGVDAELARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPS 212
           PN++  GG        +  R +G+  E+                        G   RD S
Sbjct: 69  PNFMIQGG--------DFTRGNGTGGES----------------------IYGTTFRDES 98
Query: 213 KPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEK 272
                 K     G   +     G + NG++F I T  +P LD   +V GRV++G++V +K
Sbjct: 99  FSG---KAGRHTGLGCLSMANAGPNTNGSQFFICTAATPWLDGKHVVFGRVIDGLDVVKK 155
Query: 273 I 273
           +
Sbjct: 156 V 156

>pdb|3ICH|A Chain A, Crystal Structure Of Cyclophilin B At 1.2 A Resolution Length = 188

Iteration: 1
 Score = 76.3 bits (186), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/225 (24%), Positives = 91/225 (40%), Gaps = 61/225 (27%)
Query: 98  TKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQ 157
           T +V+ D+ I  +  GR++ GL+G + P     F +L +G  G  Y+  +F +++ +++ 
Sbjct: 15  TVKVYFDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFMI 74
Query: 158 HGGVRSYGVDAELARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPK 217
            GG  + G         G ++  ER  +E        PG  ++A                
Sbjct: 75  QGGDFTRG-----DGTGGKSIYGERFPDENFKLKHYGPGWVSMA---------------- 113
Query: 218 IKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKIGEVK 277
                            GKD NG++F I T  +  LD   +V G+VLEGMEV  K+   K
Sbjct: 114 ---------------NAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVESTK 158
Query: 278 TVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNCGLME 322
           T                 D R        ++P   V++ +CG +E
Sbjct: 159 T-----------------DSR--------DKPLKDVIIADCGKIE 178

>pdb|1CYN|A Chain A, Cyclophilin B Complexed With [d-(Cholinylester)ser8]-Cyclosporin Length = 178

Iteration: 1
 Score = 76.3 bits (186), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/225 (24%), Positives = 91/225 (40%), Gaps = 61/225 (27%)
Query: 98  TKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQ 157
           T +V+ D+ I  +  GR++ GL+G + P     F +L +G  G  Y+  +F +++ +++ 
Sbjct: 5   TVKVYFDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFMI 64
Query: 158 HGGVRSYGVDAELARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPK 217
            GG  + G         G ++  ER  +E        PG  ++A                
Sbjct: 65  QGGDFTRG-----DGTGGKSIYGERFPDENFKLKHYGPGWVSMA---------------- 103
Query: 218 IKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKIGEVK 277
                            GKD NG++F I T  +  LD   +V G+VLEGMEV  K+   K
Sbjct: 104 ---------------NAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVESTK 148
Query: 278 TVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNCGLME 322
           T                 D R        ++P   V++ +CG +E
Sbjct: 149 T-----------------DSR--------DKPLKDVIIADCGKIE 168

>pdb|4FRV|A Chain A, Crystal Structure Of Mutated Cyclophilin B That Causes Hyperelastosis Cutis In The American Quarter Horse Length = 185

Iteration: 1
 Score = 75.9 bits (185), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 56/225 (24%), Positives = 90/225 (40%), Gaps = 61/225 (27%)
Query: 98  TKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQ 157
           T +V+ D+ I  +  GR+VIGL+G + P     F +L +G  G  Y+  +F +++ +++ 
Sbjct: 12  TVKVYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFGYKDSKFHRVIKDFMI 71
Query: 158 HGGVRSYGVDAELARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPK 217
            GG  + G         G ++  ER  +E        PG  ++A                
Sbjct: 72  QGGDFTRG-----DGTGGKSIYGERFPDENFKLKHYGPGWVSMA---------------- 110
Query: 218 IKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKIGEVK 277
                            GKD NG++F I T  +  LD   +V G+VLEGMEV  K+   K
Sbjct: 111 ---------------NAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVETTK 155
Query: 278 TVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNCGLME 322
           T                          G ++P   V + +CG +E
Sbjct: 156 T-------------------------DGRDKPLKDVTIADCGKIE 175

>pdb|4FRU|A Chain A, Crystal Structure Of Horse Wild-Type Cyclophilin B Length = 185

Iteration: 1
 Score = 75.9 bits (185), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 56/225 (24%), Positives = 90/225 (40%), Gaps = 61/225 (27%)
Query: 98  TKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQ 157
           T +V+ D+ I  +  GR+VIGL+G + P     F +L +G  G  Y+  +F +++ +++ 
Sbjct: 12  TVKVYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFGYKDSKFHRVIKDFMI 71
Query: 158 HGGVRSYGVDAELARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPK 217
            GG  + G         G ++  ER  +E        PG  ++A                
Sbjct: 72  QGGDFTRG-----DGTGGKSIYGERFPDENFKLKHYGPGWVSMA---------------- 110
Query: 218 IKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKIGEVK 277
                            GKD NG++F I T  +  LD   +V G+VLEGMEV  K+   K
Sbjct: 111 ---------------NAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVETTK 155
Query: 278 TVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNCGLME 322
           T                          G ++P   V + +CG +E
Sbjct: 156 T-------------------------DGRDKPLKDVTIADCGKIE 175

>pdb|3BT8|A Chain A, Crystal Structure Of Mutant Cyclophilin (R147a) From Leishmania Donovani Length = 172

Iteration: 1
 Score = 73.9 bits (180), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 79/181 (43%), Gaps = 37/181 (20%)
Query: 98  TKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQ 157
           T +V+ D+ ID +  GRI IGL+G  AP     F  L +G  G  Y+   F +++ N++ 
Sbjct: 11  TAKVYFDVMIDSEPLGRITIGLFGKDAPLTTENFRQLCTGEHGFGYKDSIFHRVIQNFMI 70
Query: 158 HGGVRSYGVDAELARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPK 217
            GG  +           G ++  E+  +E   N +   G  ++A                
Sbjct: 71  QGGDFT-----NFDGTGGKSIYGEKFADE-NLNVKHFVGALSMA---------------- 108
Query: 218 IKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKIGEVK 277
                            G + NG++F I T  +P LD + +V G+VL+GM+V  +I + K
Sbjct: 109 ---------------NAGPNTNGSQFFITTAPTPWLDGAHVVFGKVLDGMDVVLRIEKTK 153
Query: 278 T 278
           T
Sbjct: 154 T 154

>pdb|2HAQ|A Chain A, Crystal Structure Of Cyclophilin A From Leishmania Donovani Length = 172

Iteration: 1
 Score = 72.8 bits (177), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 78/181 (43%), Gaps = 37/181 (20%)
Query: 98  TKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQ 157
           T +V+ D+ ID +  GRI IGL+G  AP     F  L +G  G  Y+   F +++ N++ 
Sbjct: 11  TAKVYFDVMIDSEPLGRITIGLFGKDAPLTTENFRQLCTGEHGFGYKDSIFHRVIQNFMI 70
Query: 158 HGGVRSYGVDAELARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPK 217
            GG  +           G ++  E+  +E   N +   G  ++A                
Sbjct: 71  QGGDFT-----NFDGTGGKSIYGEKFADE-NLNVKHFVGALSMA---------------- 108
Query: 218 IKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKIGEVK 277
                            G + NG++F I T  +P LD   +V G+VL+GM+V  +I + K
Sbjct: 109 ---------------NAGPNTNGSQFFITTAPTPWLDGRHVVFGKVLDGMDVVLRIEKTK 153
Query: 278 T 278
           T
Sbjct: 154 T 154

>pdb|1H0P|A Chain A, Cyclophilin_5 From C. Elegans Length = 182

Iteration: 1
 Score = 70.9 bits (172), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 50/176 (28%), Positives = 74/176 (42%), Gaps = 36/176 (20%)
Query: 98  TKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQ 157
           T RV+ D+ I GK  GRIVIGL+G + P  A  F  L     G  Y   +F +++ +++ 
Sbjct: 6   TDRVYFDMEIGGKPIGRIVIGLFGKTVPKTATNFIELAKKPKGEGYPGSKFHRVIADFMI 65
Query: 158 HGGVRSYGVDAELARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPK 217
            GG  + G         G ++  E+  +E                               
Sbjct: 66  QGGDFTRGDGT-----GGRSIYGEKFADE------------------------------N 90
Query: 218 IKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKI 273
            KL    G   +     G D NG++F I T  +P LD   +V G++LEGM+V  KI
Sbjct: 91  FKL-KHYGAGWLSMANAGADTNGSQFFITTVKTPWLDGRHVVFGKILEGMDVVRKI 145

>pdb|1XO7|A Chain A, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi Length = 166

Iteration: 1
 Score = 70.5 bits (171), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 78/181 (43%), Gaps = 37/181 (20%)
Query: 98  TKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQ 157
           T +V+ DI+I  +  GR+VIGL+G+  P     F  L SG  G  Y+   F +++ N++ 
Sbjct: 5   TDKVYFDITIGDEPVGRVVIGLFGNDVPKTVENFKQLASGENGFGYKGSIFHRVIRNFMI 64
Query: 158 HGGVRSYGVDAELARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPK 217
            GG  +           G ++   R  +E            NL                K
Sbjct: 65  QGGDFT-----NFDGTGGKSIYGTRFDDE------------NL----------------K 91
Query: 218 IKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKIGEVK 277
           IK         +     G + NG++F + T  +P LD   +V G+V+EGM+V +K+   K
Sbjct: 92  IKHFVGA----VSMANAGPNSNGSQFFVTTAPTPWLDGRHVVFGKVVEGMDVVKKVENTK 147
Query: 278 T 278
           T
Sbjct: 148 T 148

>pdb|1DYW|A Chain A, Biochemical And Structural Characterization Of A Divergent Loop Cyclophilin From Caenorhabditis Elegans Length = 173

Iteration: 1
 Score = 70.1 bits (170), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 53/193 (27%), Positives = 85/193 (44%), Gaps = 55/193 (28%)
Query: 100 RVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGIS-------YRRKEFIKIM 152
           +VF DI+I GK++GRIV+ LY D  P  A  F +L +G  GI        ++  +F +I+
Sbjct: 5   KVFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRII 64
Query: 153 PNYVQHGGVRSYGVDAELARRSGSNLET---ERLMEEWKANNERCPGTKNLAGTVGIIVR 209
           PN++  GG        +  R +G+  E+   E+  +E        PG  ++A        
Sbjct: 65  PNFMIQGG--------DFTRGNGTGGESIYGEKFPDENFKEKHTGPGVLSMA-------- 108
Query: 210 DPSKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEV 269
                                    G + NG++F + T  +  LD   +V GRV+EG++V
Sbjct: 109 -----------------------NAGPNTNGSQFFLCTVKTEWLDGKHVVFGRVVEGLDV 145
Query: 270 AEKIGEVKTVQEN 282
                 VK V+ N
Sbjct: 146 ------VKAVESN 152

>pdb|1C5F|A Chain A, Crystal Structure Of The Cyclophilin-Like Domain From Brugia Malayi Complexed With Cyclosporin A Length = 177

Iteration: 1
 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 59/233 (25%), Positives = 91/233 (39%), Gaps = 69/233 (29%)
Query: 95  KDPTKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAG--------ISYRRK 146
           K   +RVFLD++IDG  AGRIV+ LY D AP     F  L +G AG        + Y+  
Sbjct: 3   KKDRRRVFLDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGS 62
Query: 147 EFIKIMPNYVQHGGVRSYGVDAELARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGI 206
            F +++ N++  GG  + G         G   + E  + +                    
Sbjct: 63  TFHRVIKNFMIQGGDFTKGDGTGGESIYGGMFDDEEFVMK-------------------- 102
Query: 207 IVRDPSKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEG 266
                    P +  +A +          G + NG++F I T  +P L+   +V G+V+ G
Sbjct: 103 ------HDEPFVVSMANK----------GPNTNGSQFFITTTPAPHLNNIHVVFGKVVSG 146
Query: 267 MEVAEKIGEVKTVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNCG 319
            EV  KI  +KT  +                         NRP + V++ NCG
Sbjct: 147 QEVVTKIEYLKTNSK-------------------------NRPLADVVILNCG 174

>pdb|2RMC|A Chain A, Crystal Structure Of Murine Cyclophilin C Complexed With Immunosuppressive Drug Cyclosporin A Length = 182

Iteration: 1
 Score = 67.8 bits (164), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 70/176 (39%), Gaps = 36/176 (20%)
Query: 98  TKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQ 157
           T +VF D+ I  K  GRIVIGL+G+  P     F +L +G  G  Y+   F +++ +++ 
Sbjct: 7   TDKVFFDVRIGDKDVGRIVIGLFGNVVPKTVENFVALATGEKGYGYKGSIFHRVIKDFMI 66
Query: 158 HGGVRSYGVDAELARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPK 217
            GG        +   R G+                            G+ +   + P   
Sbjct: 67  QGG--------DFTARDGTG---------------------------GMSIYGETFPDEN 91
Query: 218 IKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKI 273
            KL    G   +     G D NG++F I       LD   +V G+VL+GM V   I
Sbjct: 92  FKL-KHYGIGWVSMANAGPDTNGSQFFITLTKPTWLDGKHVVFGKVLDGMTVVHSI 146

>pdb|2ESL|A Chain A, Human Cyclophilin C In Complex With Cyclosporin A Length = 190

Iteration: 1
 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 70/176 (39%), Gaps = 36/176 (20%)
Query: 98  TKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQ 157
           T +VF D+ I  K  GRIVIGL+G   P     F +L +G  G  Y+  +F +++ +++ 
Sbjct: 15  TAKVFFDVRIGDKDVGRIVIGLFGKVVPKTVENFVALATGEKGYGYKGSKFHRVIKDFMI 74
Query: 158 HGGVRSYGVDAELARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPK 217
            GG  + G                                    GT G+ +   + P   
Sbjct: 75  QGGDITTG-----------------------------------DGTGGVSIYGETFPDEN 99
Query: 218 IKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKI 273
            KL    G   +     G D NG++F I       LD   +V G+V++GM V   I
Sbjct: 100 FKL-KHYGIGWVSMANAGPDTNGSQFFITLTKPTWLDGKHVVFGKVIDGMTVVHSI 154

>pdb|3K0R|A Chain A, Cryogenic Structure Of Cypa Mutant Arg55lys Length = 165

Iteration: 1
 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/178 (26%), Positives = 76/178 (42%), Gaps = 38/178 (21%)
Query: 96  DPTKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNY 155
           +PT  VF DI++DG+  GR+   L+ D  P  A  F +L +G  G  Y+   F KI+P +
Sbjct: 3   NPT--VFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHKIIPGF 60
Query: 156 VQHGGVRSYGVDAELARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPP 215
           +  GG        +  R +G+                   G K++ G          K  
Sbjct: 61  MCQGG--------DFTRHNGT-------------------GGKSIYG---------EKFE 84
Query: 216 PKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKI 273
            +  ++   G   +     G + NG++F I T  +  LD   +V G+V EGM + E +
Sbjct: 85  DENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAM 142

>pdb|2X25|B Chain B, Free Acetyl-Cypa Orthorhombic Form Length = 169

Iteration: 1
 Score = 65.9 bits (159), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 76/178 (42%), Gaps = 38/178 (21%)
Query: 96  DPTKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNY 155
           +PT  VF DI++DG+  GR+   L+ D  P  A  F +L +G  G  Y+   F +I+P +
Sbjct: 7   NPT--VFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGF 64
Query: 156 VQHGGVRSYGVDAELARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPP 215
           +  GG        +  R +G+                   G K++ G          K  
Sbjct: 65  MCQGG--------DFTRHNGT-------------------GGKSIYG---------EKFE 88
Query: 216 PKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKI 273
            +  ++   G   +     G + NG++F I T  +  LD   +V G+V EGM + E +
Sbjct: 89  DENFILKHTGPGILSMANAGPNTNGSQFFICTAKTKWLDGXHVVFGKVKEGMNIVEAM 146

>pdb|2RMA|A Chain A, Crystal Structures Of Cyclophilin A Complexed With Cyclosporin A And N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine Cyclosporin A Length = 165

Iteration: 1
 Score = 65.5 bits (158), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 76/178 (42%), Gaps = 38/178 (21%)
Query: 96  DPTKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNY 155
           +PT  VF DI++DG+  GR+   L+ D  P  A  F +L +G  G  Y+   F +I+P +
Sbjct: 3   NPT--VFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGF 60
Query: 156 VQHGGVRSYGVDAELARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPP 215
           +  GG        +  R +G+                   G K++ G          K  
Sbjct: 61  MCQGG--------DFTRHNGT-------------------GGKSIYG---------EKFE 84
Query: 216 PKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKI 273
            +  ++   G   +     G + NG++F I T  +  LD   +V G+V EGM + E +
Sbjct: 85  DENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAM 142

>pdb|1BCK|A Chain A, Human Cyclophilin A Complexed With 2-Thr Cyclosporin Length = 165

Iteration: 1
 Score = 65.5 bits (158), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 76/178 (42%), Gaps = 38/178 (21%)
Query: 96  DPTKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNY 155
           +PT  VF DI++DG+  GR+   L+ D  P  A  F +L +G  G  Y+   F +I+P +
Sbjct: 3   NPT--VFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGF 60
Query: 156 VQHGGVRSYGVDAELARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPP 215
           +  GG        +  R +G+                   G K++ G          K  
Sbjct: 61  MCQGG--------DFTRHNGT-------------------GGKSIYG---------EKFE 84
Query: 216 PKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKI 273
            +  ++   G   +     G + NG++F I T  +  LD   +V G+V EGM + E +
Sbjct: 85  DENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAM 142

>pdb|5CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Gly-Pro Length = 164

Iteration: 1
 Score = 65.5 bits (158), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 76/178 (42%), Gaps = 38/178 (21%)
Query: 96  DPTKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNY 155
           +PT  VF DI++DG+  GR+   L+ D  P  A  F +L +G  G  Y+   F +I+P +
Sbjct: 2   NPT--VFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGF 59
Query: 156 VQHGGVRSYGVDAELARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPP 215
           +  GG        +  R +G+                   G K++ G          K  
Sbjct: 60  MCQGG--------DFTRHNGT-------------------GGKSIYG---------EKFE 83
Query: 216 PKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKI 273
            +  ++   G   +     G + NG++F I T  +  LD   +V G+V EGM + E +
Sbjct: 84  DENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAM 141

>pdb|2X2A|A Chain A, Free Acetyl-Cypa Trigonal Form Length = 165

Iteration: 1
 Score = 65.5 bits (158), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 76/178 (42%), Gaps = 38/178 (21%)
Query: 96  DPTKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNY 155
           +PT  VF DI++DG+  GR+   L+ D  P  A  F +L +G  G  Y+   F +I+P +
Sbjct: 3   NPT--VFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGF 60
Query: 156 VQHGGVRSYGVDAELARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPP 215
           +  GG        +  R +G+                   G K++ G          K  
Sbjct: 61  MCQGG--------DFTRHNGT-------------------GGKSIYG---------EKFE 84
Query: 216 PKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKI 273
            +  ++   G   +     G + NG++F I T  +  LD   +V G+V EGM + E +
Sbjct: 85  DENFILKHTGPGILSMANAGPNTNGSQFFICTAKTKWLDGXHVVFGKVKEGMNIVEAM 142

>pdb|2X2C|K Chain K, Acetyl-Cypa:cyclosporine Complex Length = 165

Iteration: 1
 Score = 65.5 bits (158), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 76/178 (42%), Gaps = 38/178 (21%)
Query: 96  DPTKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNY 155
           +PT  VF DI++DG+  GR+   L+ D  P  A  F +L +G  G  Y+   F +I+P +
Sbjct: 3   NPT--VFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGF 60
Query: 156 VQHGGVRSYGVDAELARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPP 215
           +  GG        +  R +G+                   G K++ G          K  
Sbjct: 61  MCQGG--------DFTRHNGT-------------------GGKSIYG---------EKFE 84
Query: 216 PKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKI 273
            +  ++   G   +     G + NG++F I T  +  LD   +V G+V EGM + E +
Sbjct: 85  DENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGXHVVFGKVKEGMNIVEAM 142

>pdb|3K0O|A Chain A, Room Temperature Structure Of Cypa Mutant Ser99thr Length = 165

Iteration: 1
 Score = 65.5 bits (158), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 76/178 (42%), Gaps = 38/178 (21%)
Query: 96  DPTKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNY 155
           +PT  VF DI++DG+  GR+   L+ D  P  A  F +L +G  G  Y+   F +I+P +
Sbjct: 3   NPT--VFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGF 60
Query: 156 VQHGGVRSYGVDAELARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPP 215
           +  GG        +  R +G+                   G K++ G          K  
Sbjct: 61  MCQGG--------DFTRHNGT-------------------GGKSIYG---------EKFE 84
Query: 216 PKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKI 273
            +  ++   G   +     G + NG++F I T  +  LD   +V G+V EGM + E +
Sbjct: 85  DENFILKHTGPGILTMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAM 142

>pdb|1M9E|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N- Terminal Domain (1-146) M-Type H87a Complex. Length = 164

Iteration: 1
 Score = 65.5 bits (158), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 76/178 (42%), Gaps = 38/178 (21%)
Query: 96  DPTKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNY 155
           +PT  VF DI++DG+  GR+   L+ D  P  A  F +L +G  G  Y+   F +I+P +
Sbjct: 3   NPT--VFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGF 60
Query: 156 VQHGGVRSYGVDAELARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPP 215
           +  GG        +  R +G+                   G K++ G          K  
Sbjct: 61  MCQGG--------DFTRHNGT-------------------GGKSIYG---------EKFE 84
Query: 216 PKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKI 273
            +  ++   G   +     G + NG++F I T  +  LD   +V G+V EGM + E +
Sbjct: 85  DENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAM 142

>pdb|3RDD|A Chain A, Human Cyclophilin A Complexed With An Inhibitor Length = 184

Iteration: 1
 Score = 65.1 bits (157), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 76/178 (42%), Gaps = 38/178 (21%)
Query: 96  DPTKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNY 155
           +PT  VF DI++DG+  GR+   L+ D  P  A  F +L +G  G  Y+   F +I+P +
Sbjct: 22  NPT--VFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGF 79
Query: 156 VQHGGVRSYGVDAELARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPP 215
           +  GG        +  R +G+                   G K++ G          K  
Sbjct: 80  MCQGG--------DFTRHNGT-------------------GGKSIYG---------EKFE 103
Query: 216 PKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKI 273
            +  ++   G   +     G + NG++F I T  +  LD   +V G+V EGM + E +
Sbjct: 104 DENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAM 161

>pdb|2XGY|B Chain B, Complex Of Rabbit Endogenous Lentivirus (Relik)capsid With Cyclophilin A Length = 173

Iteration: 1
 Score = 65.1 bits (157), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 46/181 (25%), Positives = 76/181 (41%), Gaps = 44/181 (24%)
Query: 96  DPTKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNY 155
           +PT  VF DI++DG+  GR+   L+ D  P  A  F +L +G  G  Y+   F +I+P +
Sbjct: 11  NPT--VFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGF 68
Query: 156 VQHGGVRSYGVDAELARRSGS---NLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPS 212
           +  GG        +  R +G+   ++  E+  +E        PG  ++A           
Sbjct: 69  MCQGG--------DFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMA----------- 109
Query: 213 KPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEK 272
                                 G + NG++F I T  +  LD   +V G+V EGM + E 
Sbjct: 110 --------------------NAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEA 149
Query: 273 I 273
           +
Sbjct: 150 M 150

>pdb|3PMP|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora Perniciosa In Complex With Cyclosporin A Length = 164

Iteration: 1
 Score = 65.1 bits (157), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 74/176 (42%), Gaps = 42/176 (23%)
Query: 101 VFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHGG 160
           VF +ISI+ K  GRIV  LY ++ P  A  F  L +G  G  Y+   F +++P ++  GG
Sbjct: 5   VFFNISINDKPEGRIVFKLYDEAVPKTAKNFRELATGQHGFGYKDSIFHRVIPQFMLQGG 64
Query: 161 VRSYGVDAELARRSGS---NLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPK 217
                   +  R +G+   ++  E+  +E        PG  ++A                
Sbjct: 65  --------DFTRHNGTGGKSIYGEKFADENFQVKHTKPGLLSMA---------------- 100
Query: 218 IKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKI 273
                            G + NG++F I T  +  LD   +V G V+EG+++  K+
Sbjct: 101 ---------------NAGANTNGSQFFITTVPTSWLDGKHVVFGEVIEGLDIVRKV 141

>pdb|3O7T|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora Perniciosa Length = 164

Iteration: 1
 Score = 65.1 bits (157), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 74/176 (42%), Gaps = 42/176 (23%)
Query: 101 VFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHGG 160
           VF +ISI+ K  GRIV  LY ++ P  A  F  L +G  G  Y+   F +++P ++  GG
Sbjct: 6   VFFNISINDKPEGRIVFKLYDEAVPKTAKNFRELATGQHGFGYKDSIFHRVIPQFMLQGG 65
Query: 161 VRSYGVDAELARRSGS---NLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPK 217
                   +  R +G+   ++  E+  +E        PG  ++A                
Sbjct: 66  --------DFTRHNGTGGKSIYGEKFADENFQVKHTKPGLLSMA---------------- 101
Query: 218 IKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKI 273
                            G + NG++F I T  +  LD   +V G V+EG+++  K+
Sbjct: 102 ---------------NAGANTNGSQFFITTVPTSWLDGKHVVFGEVIEGLDIVRKV 142

>pdb|4DGD|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c Mutant Length = 165

Iteration: 1
 Score = 65.1 bits (157), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 74/178 (41%), Gaps = 38/178 (21%)
Query: 96  DPTKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNY 155
           +PT  VF DI++DG+  GR+   L+ D  P  A  F +L +G  G  Y+   F +I+P +
Sbjct: 3   NPT--VFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGF 60
Query: 156 VQHGGVRSYGVDAELARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPP 215
           +  GG  ++          G ++  E+  +E        PG  ++A              
Sbjct: 61  MCQGGNFTH-----CNGTGGKSIYGEKFEDENFILKHTGPGILSMA-------------- 101
Query: 216 PKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKI 273
                              G + NG++F I T  +  LD   +V G+V EGM + E +
Sbjct: 102 -----------------NAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAM 142

>pdb|3R49|A Chain A, Human Cyclophilin D Complexed With Quinolin-8-Amine Length = 166

Iteration: 1
 Score = 64.7 bits (156), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 53/219 (24%), Positives = 87/219 (39%), Gaps = 62/219 (28%)
Query: 101 VFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHGG 160
           V+LD+  +GK  GR+V+ L  D  P  A  F +L +G  G  Y+   F +++P+++   G
Sbjct: 7   VYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAG 66
Query: 161 VRSYGVDAELARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIKL 220
                                         N    G K++ G         S+ P +   
Sbjct: 67  ---------------------------DFTNHNGTGGKSIYG---------SRFPDENFT 90
Query: 221 VARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKIGEVKTVQ 280
           +   G   +     G + NG++F I T  +  LD   +V G V+EGM+V +KI       
Sbjct: 91  LKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEGMDVVKKI------- 143
Query: 281 ENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNCG 319
           E+ GS   R +K                   K+++T+CG
Sbjct: 144 ESFGSKSGRTSK-------------------KIVITDCG 163

>pdb|1IST|A Chain A, Crystal Structure Of Yeast Cyclophilin A, Cpr1 Length = 162

Iteration: 1
 Score = 64.7 bits (156), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 47/188 (25%), Positives = 82/188 (43%), Gaps = 45/188 (23%)
Query: 100 RVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHG 159
           +V+ D+  DG+  GR+V  LY D  P  A  F +L +G  G  Y    F +++P+++  G
Sbjct: 3   QVYFDVEADGQPIGRVVFKLYNDIVPKTAENFRALCTGEKGFGYAGSPFHRVIPDFMLQG 62
Query: 160 GVRSYGVDAELARRSGSNLETERLMEE-WKANNERCPGTKNLAGTVGIIVRDPSKPPPKI 218
           G  + G         G ++   +  +E +K +++R PG  ++A                 
Sbjct: 63  GDFTAG-----NGTGGKSIYGGKFPDENFKKHHDR-PGLLSMA----------------- 99
Query: 219 KLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKIGEVKT 278
                           G + NG++F I T   P LD   +V G V++G ++ +K+     
Sbjct: 100 --------------NAGPNTNGSQFFITTVPCPWLDGKHVVFGEVVDGYDIVKKV----- 140
Query: 279 VQENTGSP 286
             E+ GSP
Sbjct: 141 --ESLGSP 146

>pdb|2BIT|X Chain X, Crystal Structure Of Human Cyclophilin D At 1.7 A Resolution Length = 165

Iteration: 1
 Score = 64.7 bits (156), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 53/221 (23%), Positives = 88/221 (39%), Gaps = 62/221 (28%)
Query: 101 VFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHGG 160
           V+LD+  +GK  GR+V+ L  D  P  A  F +L +G  G  Y+   F +++P+++   G
Sbjct: 6   VYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAG 65
Query: 161 VRSYGVDAELARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIKL 220
                                         N    G K++ G         S+ P +   
Sbjct: 66  ---------------------------DFTNHNGTGGKSIYG---------SRFPDENFT 89
Query: 221 VARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKIGEVKTVQ 280
           +   G   +     G + NG++F I T  +  LD   +V G V+EGM+V +KI       
Sbjct: 90  LKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEGMDVVKKI------- 142
Query: 281 ENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNCGLM 321
           E+ GS   R +K                   K+++T+CG +
Sbjct: 143 ESFGSKSGRTSK-------------------KIVITDCGQL 164

>pdb|2Z6W|A Chain A, Crystal Structure Of Human Cyclophilin D In Complex With Cyclosporin A Length = 165

Iteration: 1
 Score = 64.7 bits (156), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 53/219 (24%), Positives = 87/219 (39%), Gaps = 62/219 (28%)
Query: 101 VFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHGG 160
           V+LD+  +GK  GR+V+ L  D  P  A  F +L +G  G  Y+   F +++P+++   G
Sbjct: 6   VYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAG 65
Query: 161 VRSYGVDAELARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIKL 220
                                         N    G K++ G         S+ P +   
Sbjct: 66  ---------------------------DFTNHNGTGGKSIYG---------SRFPDENFT 89
Query: 221 VARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKIGEVKTVQ 280
           +   G   +     G + NG++F I T  +  LD   +V G V+EGM+V +KI       
Sbjct: 90  LKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEGMDVVKKI------- 142
Query: 281 ENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNCG 319
           E+ GS   R +K                   K+++T+CG
Sbjct: 143 ESFGSKSGRTSK-------------------KIVITDCG 162

>pdb|3QYU|A Chain A, Crystal Structure Of Human Cyclophilin D At 1.54 A Resolution At Room Temperature Length = 164

Iteration: 1
 Score = 64.7 bits (156), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 53/221 (23%), Positives = 88/221 (39%), Gaps = 62/221 (28%)
Query: 101 VFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHGG 160
           V+LD+  +GK  GR+V+ L  D  P  A  F +L +G  G  Y+   F +++P+++   G
Sbjct: 5   VYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAG 64
Query: 161 VRSYGVDAELARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIKL 220
                                         N    G K++ G         S+ P +   
Sbjct: 65  ---------------------------DFTNHNGTGGKSIYG---------SRFPDENFT 88
Query: 221 VARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKIGEVKTVQ 280
           +   G   +     G + NG++F I T  +  LD   +V G V+EGM+V +KI       
Sbjct: 89  LKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEGMDVVKKI------- 141
Query: 281 ENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNCGLM 321
           E+ GS   R +K                   K+++T+CG +
Sbjct: 142 ESFGSKSGRTSK-------------------KIVITDCGQL 163

>pdb|2WLW|A Chain A, Structure Of The N-Terminal Capsid Domain Of Hiv-2 Length = 165

Iteration: 1
 Score = 64.3 bits (155), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 74/178 (41%), Gaps = 38/178 (21%)
Query: 96  DPTKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNY 155
           +PT  VF DI++DG+  GR+   L+ D  P  A  F +L +G  G  Y+   F +I+P +
Sbjct: 3   NPT--VFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGF 60
Query: 156 VQHGGVRSYGVDAELARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPP 215
           +  GG  ++          G ++  E+  +E        PG  ++A              
Sbjct: 61  MCQGGNFTH-----HNGTGGKSIYGEKFEDENFILKHTGPGILSMA-------------- 101
Query: 216 PKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKI 273
                              G + NG++F I T  +  LD   +V G+V EGM + E +
Sbjct: 102 -----------------NAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAM 142

>pdb|2X83|B Chain B, Evolutionary Basis Of Hiv Restriction By The Antiretroviral Trimcyp Length = 163

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 74/178 (41%), Gaps = 38/178 (21%)
Query: 96  DPTKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNY 155
           +PT  VF DI++DG+  GR+   L+ D  P  A  F +L +G  G  Y+   F +I+P +
Sbjct: 2   NPT--VFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGF 59
Query: 156 VQHGGVRSYGVDAELARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPP 215
           +  GG  ++          G ++  E+  +E        PG  ++A              
Sbjct: 60  MCQGGDFTH-----HNGTGGKSIYGEKFEDENFILKHTGPGILSMA-------------- 100
Query: 216 PKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKI 273
                              G + NG++F I T  +  LD   +V G+V EGM + E +
Sbjct: 101 -----------------NAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAM 141

>pdb|2ALF|A Chain A, Crystal Structure Of Human Cypa Mutant K131a Length = 164

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 75/178 (42%), Gaps = 38/178 (21%)
Query: 96  DPTKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNY 155
           +PT  VF DI++DG+  GR+   L+ D  P  A  F +L +G  G  Y+   F +I+P +
Sbjct: 2   NPT--VFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGF 59
Query: 156 VQHGGVRSYGVDAELARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPP 215
           +  GG        +  R +G+                   G K++ G          K  
Sbjct: 60  MCQGG--------DFTRHNGT-------------------GGKSIYG---------EKFE 83
Query: 216 PKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKI 273
            +  ++   G   +     G + NG++F I T  +  LD   +V G V EGM + E +
Sbjct: 84  DENFILKHTGPGILSMANAGPNTNGSQFFICTAKTKWLDGKHVVFGAVKEGMNIVEAM 141

>pdb|2WFI|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain Of Human Cyclophilin G Length = 179

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/187 (25%), Positives = 74/187 (39%), Gaps = 44/187 (23%)
Query: 100 RVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAG--------ISYRRKEFIKI 151
           R F DI+I+ + AGR+V  L+ D  P     F  L +G  G        + Y+   F ++
Sbjct: 11  RCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSXLFHRV 70
Query: 152 MPNYVQHGGVRSYGVDAELARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGIIVRDP 211
           + +++  GG  S G       R G ++      +E  A                      
Sbjct: 71  VKDFMVQGGDFSEG-----NGRGGESIYGGFFEDESFA---------------------- 103
Query: 212 SKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAE 271
                    V    +  +     GKD NG++F I TK +P LD   +V G+V+ G EV  
Sbjct: 104 ---------VKHNKEFLLSMANRGKDTNGSQFFITTKPTPHLDGHHVVFGQVISGQEVVR 154
Query: 272 KIGEVKT 278
           +I   KT
Sbjct: 155 EIENQKT 161

>pdb|2GW2|A Chain A, Crystal Structure Of The Peptidyl-Prolyl Isomerase Domain Of Human Cyclophilin G Length = 198

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/187 (25%), Positives = 73/187 (39%), Gaps = 44/187 (23%)
Query: 100 RVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAG--------ISYRRKEFIKI 151
           R F DI+I+ + AGR+V  L+ D  P     F  L +G  G        + Y+   F ++
Sbjct: 28  RCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRV 87
Query: 152 MPNYVQHGGVRSYGVDAELARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGIIVRDP 211
           + +++  GG  S G       R G ++      +E  A                      
Sbjct: 88  VKDFMVQGGDFSEG-----NGRGGESIYGGFFEDESFA---------------------- 120
Query: 212 SKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAE 271
                    V       +     GKD NG++F I TK +P LD   +V G+V+ G EV  
Sbjct: 121 ---------VKHNAAFLLSMANRGKDTNGSQFFITTKPTPHLDGHHVVFGQVISGQEVVR 171
Query: 272 KIGEVKT 278
           +I   KT
Sbjct: 172 EIENQKT 178

>pdb|2WFJ|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain Of Human Cyclophilin G In Complex With Cyclosporin A Length = 179

Iteration: 1
 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/187 (25%), Positives = 74/187 (39%), Gaps = 44/187 (23%)
Query: 100 RVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAG--------ISYRRKEFIKI 151
           R F DI+I+ + AGR+V  L+ D  P     F  L +G  G        + Y+   F ++
Sbjct: 11  RCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRV 70
Query: 152 MPNYVQHGGVRSYGVDAELARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGIIVRDP 211
           + +++  GG  S G       R G ++      +E  A                      
Sbjct: 71  VKDFMVQGGDFSEG-----NGRGGESIYGGFFEDESFA---------------------- 103
Query: 212 SKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAE 271
                    V    +  +     GKD NG++F I TK +P LD   +V G+V+ G EV  
Sbjct: 104 ---------VKHNKEFLLSMANRGKDTNGSQFFITTKPTPHLDGHHVVFGQVISGQEVVR 154
Query: 272 KIGEVKT 278
           +I   KT
Sbjct: 155 EIENQKT 161

>pdb|2PLU|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_4120 Length = 186

Iteration: 1
 Score = 61.6 bits (148), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 70/180 (38%), Gaps = 43/180 (23%)
Query: 101 VFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAG-------ISYRRKEFIKIMP 153
           V+ DISI    AGRI + L+ D  P  A  F +L +G  G       + Y    F +I+P
Sbjct: 22  VYFDISIGQTPAGRITMELFADKVPITAENFRALCTGEKGMGQSGKPLCYTGSFFHRIIP 81
Query: 154 NYVQHGGVRSYGVDAELARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSK 213
            ++  GG        +  R  G+  E+                        G   RD + 
Sbjct: 82  QFMIQGG--------DFTRGDGTGGES----------------------IYGSKFRDENF 111
Query: 214 PPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKI 273
                 +        +     G + NG++F I T   P LD   +V G+VLEGMEV + I
Sbjct: 112 ------VYTHDAPFLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGKVLEGMEVVKSI 165

>pdb|1AWS|A Chain A, Secypa Complexed With Hagpia (Pseudo-Symmetric Monomer) Length = 164

Iteration: 1
 Score = 61.2 bits (147), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 73/176 (41%), Gaps = 38/176 (21%)
Query: 96  DPTKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNY 155
           +PT  VF DI++DG+  GR+   L+ D  P  A  F +L +G  G  Y+   F +I+P +
Sbjct: 2   NPT--VFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGF 59
Query: 156 VQHGGVRSYGVDAELARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPP 215
              GG        +  R +G+                   G K++ G          K  
Sbjct: 60  XCQGG--------DFTRHNGT-------------------GGKSIYG---------EKFE 83
Query: 216 PKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAE 271
            +  ++   G   +     G + NG++F I T  +  LD   +V G+V EG  + E
Sbjct: 84  DENFILKHTGPGILSXANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGXNIVE 139

>pdb|4I9Y|A Chain A, Structure Of The C-terminal Domain Of Nup358 Length = 167

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/194 (24%), Positives = 84/194 (43%), Gaps = 43/194 (22%)
Query: 101 VFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHGG 160
           VF D+  DG+  GRI + L+ +  P  A  F +L +G  G  ++   F +++P++V  GG
Sbjct: 9   VFFDVCADGEPLGRITMELFSNIVPRTAENFRALCTGEKGFGFKNSIFHRVIPDFVCQGG 68
Query: 161 VRSYGVDAELARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIKL 220
                   ++ +  G+  ++    ++++  N                  D     P +  
Sbjct: 69  --------DITKHDGTGGQS-IYGDKFEDEN-----------------FDVKHTGPGLLS 102
Query: 221 VARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKIGEVKTVQ 280
           +A Q          G++ N ++FVI  K +  LD   +V G V +GM+  +KI       
Sbjct: 103 MANQ----------GQNTNNSQFVITLKKAEHLDFKHVVFGFVKDGMDTVKKI------- 145
Query: 281 ENTGSPYFRVAKLI 294
           E+ GSP   V + I
Sbjct: 146 ESFGSPKGSVCRRI 159

>pdb|2CK1|A Chain A, The Structure Of Oxidised Cyclophilin A From S. Mansoni Length = 172

Iteration: 1
 Score = 58.5 bits (140), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 45/174 (25%), Positives = 70/174 (40%), Gaps = 36/174 (20%)
Query: 100 RVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHG 159
           RVF DI I    AGRIV+ L  D  P  A  F +L +G  G  Y    F +++P ++  G
Sbjct: 12  RVFFDIRIGNGDAGRIVMELRSDIVPRTAENFRALCTGERGFGYHNCCFHRVIPQFMCQG 71
Query: 160 GVRSYGVDAELARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIK 219
           G        +  +  G+                   G K++ G          K   +  
Sbjct: 72  G--------DFVKGDGT-------------------GGKSIYG---------RKFDDENF 95
Query: 220 LVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKI 273
            +  +G   +     G + NG++F I T     LD   +V GRV++G  V +K+
Sbjct: 96  QLRHEGFGVLSMANSGPNTNGSQFFICTTKCDWLDGKHVVFGRVVDGQNVVKKM 149

>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form Length = 370

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 73/190 (38%), Gaps = 44/190 (23%)
Query: 100 RVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGI--------SYRRKEFIKI 151
           RVF D+ I G+  GRIV+ L+ D  P  A  F +L +G  GI         ++   F +I
Sbjct: 17  RVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRI 76
Query: 152 MPNYVQHGGVRSYGVDAELARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGIIVRDP 211
           +  ++  GG  S           G   E E     +K + E      N            
Sbjct: 77  IKKFMIQGGDFSNQNGTGGESIYGEKFEDENF--HYKHDKEGLLSMAN------------ 122
Query: 212 SKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAE 271
                                  G + NG++F I T  +P LD   +V G+V++GM VA+
Sbjct: 123 ----------------------AGSNTNGSQFFITTVPTPHLDGKHVVFGQVIKGMGVAK 160
Query: 272 KIGEVKTVQE 281
            +  V+   E
Sbjct: 161 ILENVEVKGE 170

>pdb|2CFE|A Chain A, The 1.5 A Crystal Structure Of The Malassezia Sympodialis Mala S 6 Allergen, A Member Of The Cyclophilin Pan- Allergen Family Length = 162

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 68/173 (39%), Gaps = 36/173 (20%)
Query: 101 VFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHGG 160
           VF DI+ +G   G I   L+ D  P  AA F +L +G  G  Y    F +++P+++  GG
Sbjct: 4   VFFDITKNGAPLGTIKFKLFDDVVPKTAANFRALCTGEKGFGYAGSHFHRVIPDFMLQGG 63
Query: 161 VRSYGVDAELARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIKL 220
             + G         G+    E    + K N    PG  ++A                   
Sbjct: 64  DFTAGNGTGGKSIYGAKFADENF--QLKHNK---PGLLSMA------------------- 99
Query: 221 VARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKI 273
                         G + NG++F I T  +  LD   +V G V++GM V + I
Sbjct: 100 ------------NAGPNTNGSQFFITTVVTSWLDGKHVVFGEVIDGMNVVKAI 140

>pdb|2HE9|A Chain A, Structure Of The Peptidylprolyl Isomerase Domain Of The Human Nk-Tumour Recognition Protein Length = 192

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/227 (23%), Positives = 80/227 (35%), Gaps = 69/227 (30%)
Query: 103 LDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGI--------SYRRKEFIKIMPN 154
            DI I+ +  GRI+  L+ D  P     F  L SG  G+         Y+   F +++ N
Sbjct: 24  FDIEINREPVGRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGSTFHRVVKN 83
Query: 155 YVQHGGVRSYGVDAELARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKP 214
           ++  GG  S G         G   + E                        I+  D +  
Sbjct: 84  FMIQGGDFSEGNGKGGESIYGGYFKDENF----------------------ILKHDRA-- 119
Query: 215 PPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKIG 274
                         +     GK  NG++F I TK +P LD   +V G V+ G EV E+I 
Sbjct: 120 ------------FLLSMANRGKHTNGSQFFITTKPAPHLDGVHVVFGLVISGFEVIEQIE 167
Query: 275 EVKTVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNCGLM 321
            +KT                            +RPY+ V V +CG++
Sbjct: 168 NLKTDAA-------------------------SRPYADVRVIDCGVL 189

>pdb|1QNH|A Chain A, Plasmodium Falciparum Cyclophilin (Double Mutant) Complexed With Cyclosporin A Length = 170

Iteration: 1
 Score = 55.1 bits (131), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 43/180 (23%), Positives = 71/180 (39%), Gaps = 42/180 (23%)
Query: 100 RVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGT------AGISYRRKEFIKIMP 153
           +VF DISID  +AGRI+  L+ D  P     F +L +G         + Y+   F +I+P
Sbjct: 5   KVFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHRIIP 64
Query: 154 NYVQHGGVRSYGVDAELARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSK 213
            ++  GG  + G  +      G ++      +E        PG  ++A            
Sbjct: 65  QFMCQGGDITNGNGS-----GGESIYGRSFTDENFNMKHDQPGLLSMA------------ 107
Query: 214 PPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKI 273
                                G + N ++F+I     P LD   +V G+V+EGM V  ++
Sbjct: 108 -------------------NAGPNTNSSQFLITLVPCPWLDGKHVVFGKVIEGMNVVREM 148

>pdb|1QNG|A Chain A, Plasmodium Falciparum Cyclophilin Complexed With Cyclosporin A Length = 170

Iteration: 1
 Score = 55.1 bits (131), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 43/180 (23%), Positives = 70/180 (38%), Gaps = 42/180 (23%)
Query: 100 RVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGT------AGISYRRKEFIKIMP 153
           +VF DISID  +AGRI+  L+ D  P     F +L +G         + Y+   F +I+P
Sbjct: 5   KVFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHRIIP 64
Query: 154 NYVQHGGVRSYGVDAELARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSK 213
            ++  GG  + G  +      G ++      +E        PG  ++A            
Sbjct: 65  QFMCQGGDITNGNGS-----GGESIYGRSFTDENFNMKHDQPGLLSMA------------ 107
Query: 214 PPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKI 273
                                G + N ++F I     P LD   +V G+V+EGM V  ++
Sbjct: 108 -------------------NAGPNTNSSQFFITLVPCPWLDGKHVVFGKVIEGMNVVREM 148

>pdb|3K2C|A Chain A, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase From Encephalitozoon Cuniculi At 1.9 A Resolution Length = 193

Iteration: 1
 Score = 54.7 bits (130), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 73/180 (40%), Gaps = 38/180 (21%)
Query: 95  KDPTKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPN 154
           K+ +  V+ D+  + +S GRIV+ L  D  P  A  F +L     G  Y+   F +I+P 
Sbjct: 24  KEASGNVYFDVYANEESLGRIVMKLEDDIVPKTAKNFRTLCERPKGEGYKGSTFHRIIPG 83
Query: 155 YVQHGGVRSYGVDAELARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKP 214
           ++  GG                         ++ A+N          GT G  +     P
Sbjct: 84  FMVQGG-------------------------DYTAHN----------GTGGRSIYGEKFP 108
Query: 215 PPKIKL-VARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKI 273
               +L   ++G L +     G   NG++F I    +  LD   +V G V+EGM+V  KI
Sbjct: 109 DENFELKHTKEGILSM--ANCGAHTNGSQFFITLGKTQWLDEKHVVFGEVVEGMDVVHKI 166

>pdb|1ZMF|A Chain A, C Domain Of Human Cyclophilin-33(Hcyp33) Length = 165

Iteration: 1
 Score = 51.6 bits (122), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 40/174 (22%), Positives = 69/174 (39%), Gaps = 36/174 (20%)
Query: 100 RVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHG 159
           +V++DI I  K AGRI + L  D  P  A  F  L +   G  ++   F +I+P ++  G
Sbjct: 5   QVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMCQG 64
Query: 160 GVRSYGVDAELARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIK 219
           G        +    +G+                   G K++ G          K   +  
Sbjct: 65  G--------DFTNHNGT-------------------GGKSIYG---------KKFDDENF 88
Query: 220 LVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKI 273
           ++   G   +     G + NG++F +    +  LD   +V G V EG++V  +I
Sbjct: 89  ILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQI 142

>pdb|2R99|A Chain A, Crystal Structure Of Cyclophilin Abh-Like Domain Of Human Peptidylprolyl Isomerase E Isoform 1 Length = 173

Iteration: 1
 Score = 51.2 bits (121), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 40/174 (22%), Positives = 69/174 (39%), Gaps = 36/174 (20%)
Query: 100 RVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHG 159
           +V++DI I  K AGRI + L  D  P  A  F  L +   G  ++   F +I+P ++  G
Sbjct: 13  QVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMCQG 72
Query: 160 GVRSYGVDAELARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIK 219
           G        +    +G+                   G K++ G          K   +  
Sbjct: 73  G--------DFTNHNGT-------------------GGKSIYG---------KKFDDENF 96
Query: 220 LVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKI 273
           ++   G   +     G + NG++F +    +  LD   +V G V EG++V  +I
Sbjct: 97  ILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQI 150

>pdb|1QOI|A Chain A, U4U6 SNRNP-Specific Cyclophilin Snucyp-20 Length = 177

Iteration: 1
 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 46/196 (23%), Positives = 69/196 (35%), Gaps = 42/196 (21%)
Query: 93  ANKDPTK-RVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSG-----TAGISYRRK 146
           AN  P    VF D+SI G+  GR+ I L+ D  P  A  F    +G        I Y+  
Sbjct: 4   ANSSPVNPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGS 63
Query: 147 EFIKIMPNYVQHGGVRSYGVDAELARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGI 206
            F +++ +++  GG    G    +A         E       A     PG  ++A +   
Sbjct: 64  TFHRVIKDFMIQGGDFVNGDGTGVASIYRGPFADENFKLRHSA-----PGLLSMANS--- 115
Query: 207 IVRDPSKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEG 266
                                       G   NG +F I       LD   +V G++++G
Sbjct: 116 ----------------------------GPSTNGCQFFITCSKCDWLDGKHVVFGKIIDG 147
Query: 267 MEVAEKIGEVKTVQEN 282
           + V  KI  V T   N
Sbjct: 148 LLVMRKIENVPTGPNN 163

>pdb|3UCH|A Chain A, Crystal Structure Of A Hypotherical Peptidyl-Prolyl Cis-Trans Isomerase E (Ppie) From Homo Sapiens At 2.50 A Resolution Length = 174

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/174 (22%), Positives = 66/174 (37%), Gaps = 36/174 (20%)
Query: 100 RVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHG 159
           +V+ DI I  K AGRI   L  D  P  A  F  L +   G  ++   F +I+P +   G
Sbjct: 14  QVYXDIKIGNKPAGRIQXLLRSDVVPXTAENFRCLCTHEKGFGFKGSSFHRIIPQFXCQG 73
Query: 160 GVRSYGVDAELARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIK 219
           G        +    +G+                   G K++ G          K   +  
Sbjct: 74  G--------DFTNHNGT-------------------GGKSIYG---------KKFDDENF 97
Query: 220 LVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKI 273
           ++   G   +     G + NG++F +    +  LD   +V G V EG++V  +I
Sbjct: 98  ILKHTGPGLLSXANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQI 151

>pdb|2OSE|A Chain A, Crystal Structure Of The Mimivirus Cyclophilin Length = 234

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 54/225 (24%), Positives = 85/225 (37%), Gaps = 38/225 (16%)
Query: 78  DELPNADKNEQEQNCANKDPTKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSG 137
           ++LPN+ KN             RV++DI ++ +  GR+ I L+ D+ PAG   F  L   
Sbjct: 6   EDLPNSGKNP------------RVYMDIVLNNEIIGRLQIKLFRDAFPAGVENFVQL--- 50
Query: 138 TAGISYRRKEFIKIMPNYVQHGGVRSYGVDAELARRSGSNLETERLMEEWKANNERCPGT 197
           T G +YR           V   G   Y  +  + R          L   +  + +     
Sbjct: 51  TNGKTYR-----------VNSNGTGKYKYNRHINRTYEGCKFHNVLHNNYIVSGDIYNSN 99
Query: 198 KNLAGTVGIIVRDPSKPPPKIKLVARQGK----LEIDQEEVGKDPNGTEFVIVTKDS--- 250
            + AGTV     +P  P         + K    L    +E G     + F+I   D    
Sbjct: 100 GSSAGTV--YCDEPIPPVFGDYFYPHESKGLLSLVPYTDESGNRYYDSTFMITLDDIRPS 157
Query: 251 ---PELDASSLVVGRVLEGMEVAEKIGEVKTVQENTGSPYFRVAK 292
               ELD   +V+G+V  G++V +KI  +         P F + K
Sbjct: 158 NVLDELDRDQVVIGQVYGGLDVLDKINSMIKPYAGRKYPTFSIGK 202

>pdb|2A2N|A Chain A, Crystal Structure Of The Peptidylprolyl Isomerase Domain Of Human Ppwd1 Length = 176

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 235 GKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKIGEVKTVQENTGSPY 287
           G + NG++F I    +P LD    V GRV +GMEV ++I  VK V   T  PY
Sbjct: 114 GSNTNGSQFFITVVPTPWLDNKHTVFGRVTKGMEVVQRISNVK-VNPKTDKPY 165

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	322
2haq_A	172	Cyclophilin; rotamase, proline, isomerase, CIS-tra	1e-13
2haq_A	172	Cyclophilin; rotamase, proline, isomerase, CIS-tra	4e-08
3k2c_A	193	Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH,	5e-13
3k2c_A	193	Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH,	2e-07
3ich_A	188	Peptidyl-prolyl CIS-trans isomerase B; beta sandwi	3e-12
3ich_A	188	Peptidyl-prolyl CIS-trans isomerase B; beta sandwi	5e-08
3rdd_A	184	Peptidyl-prolyl CIS-trans isomerase A; beta barrel	6e-12
3rdd_A	184	Peptidyl-prolyl CIS-trans isomerase A; beta barrel	2e-06
2cmt_A	172	Peptidyl-prolyl CIS-trans isomerase E; rotamase ac	7e-12
2cmt_A	172	Peptidyl-prolyl CIS-trans isomerase E; rotamase ac	5e-07
3pmp_A	164	Cyclophilin A; peptidyl prolyl isomerase, isomeras	7e-12
3pmp_A	164	Cyclophilin A; peptidyl prolyl isomerase, isomeras	1e-06
2z6w_A	165	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	8e-12
2z6w_A	165	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	9e-07
2r99_A	173	Peptidyl-prolyl CIS-trans isomerase E; CIS-trans i	1e-11
2r99_A	173	Peptidyl-prolyl CIS-trans isomerase E; CIS-trans i	8e-07
2he9_A	192	NK-tumor recognition protein; cyclosporin, isomera	8e-11
2he9_A	192	NK-tumor recognition protein; cyclosporin, isomera	4e-08
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	1e-10
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	3e-07
1a58_A	177	Cyclophilin; isomerase, ppiase; 1.95A {Brugia mala	1e-10
1a58_A	177	Cyclophilin; isomerase, ppiase; 1.95A {Brugia mala	3e-08
1v9t_A	166	Cyclophilin B; beta barrel, isomerase-isomerase in	2e-10
1z81_A	229	Cyclophilin; structural genomics, structural genom	3e-10
1z81_A	229	Cyclophilin; structural genomics, structural genom	2e-06
1mzw_A	177	Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyc	4e-10
1mzw_A	177	Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyc	6e-08
2wfi_A	179	Peptidyl-prolyl CIS-trans isomerase G; phosphoprot	7e-10
2wfi_A	179	Peptidyl-prolyl CIS-trans isomerase G; phosphoprot	3e-08
2igv_A	173	Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1	1e-09
2igv_A	173	Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1	5e-07
2ose_A	234	Probable peptidyl-prolyl CIS-trans isomerase; cycl	1e-09
2ose_A	234	Probable peptidyl-prolyl CIS-trans isomerase; cycl	1e-05
2c3b_A	172	Ppiase, cyclophilin; isomerase, 3D domain swapping	2e-09
2c3b_A	172	Ppiase, cyclophilin; isomerase, 3D domain swapping	3e-06
1qng_A	170	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	2e-09
1qng_A	170	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	3e-07
2poy_A	186	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	3e-09
2poy_A	186	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	3e-07
1lop_A	164	Cyclophilin A; rotamase, isomerase-isomerase inhib	3e-08
3s6m_A	167	Peptidyl-prolyl CIS-trans isomerase; seattle struc	4e-08
2ok3_A	161	Peptidyl-prolyl CIS-trans isomerase-like 3; beta-b	7e-07
2x7k_A	166	Peptidyl-prolyl CIS-trans isomerase-like 1; isomer	7e-07
2fu0_A	160	Cyclophilin, putative; PFE0505W, cyclosporin-bindi	8e-07
1zkc_A	197	Peptidyl-prolyl CIS-trans isomerase like 2; CIS-tr	1e-06
2k7n_A	203	Peptidyl-prolyl CIS-trans isomerase-like 1; beta b	2e-06
2b71_A	196	Cyclophilin-like protein; structural genomics, str	2e-06
3bo7_A	201	Peptidyl-prolyl CIS-trans isomerase cyclophilin-T;	2e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
2a2n_A	176	Peptidylprolyl isomerase domain and WD repeat CON;	3e-06
2poe_A	185	Cyclophilin-like protein, putative; cryptosporidiu	2e-05
3rfy_A	369	Peptidyl-prolyl CIS-trans isomerase CYP38, chloro;	3e-05
2hq6_A	185	Serologically defined colon cancer antigen 10; pro	9e-05
1w74_A	191	Peptidyl-prolyl CIS-trans isomerase A; cyclophilin	3e-04

>2haq_A Cyclophilin; rotamase, proline, isomerase, CIS-trans, protozoa, KAla-AZAR.; 1.97A {Leishmania donovani} PDB: 3eov_A* 3bt8_A Length = 172

 Score = 67.2 bits (165), Expect = 1e-13
 Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 2/73 (2%)

Query: 90  QNCANKDP--TKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKE 147
            +  + +P  T +V+ D+ ID +  GRI IGL+G  AP     F  L +G  G  Y+   
Sbjct: 1   HHHHHHEPEVTAKVYFDVMIDSEPLGRITIGLFGKDAPLTTENFRQLCTGEHGFGYKDSI 60

Query: 148 FIKIMPNYVQHGG 160
           F +++ N++  GG
Sbjct: 61  FHRVIQNFMIQGG 73

>2haq_A Cyclophilin; rotamase, proline, isomerase, CIS-trans, protozoa, KAla-AZAR.; 1.97A {Leishmania donovani} PDB: 3eov_A* 3bt8_A Length = 172

 Score = 51.0 bits (123), Expect = 4e-08
 Identities = 23/85 (27%), Positives = 35/85 (41%), Gaps = 25/85 (29%)

Query: 235 GKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKIGEVKTVQENTGSPYFRVAKLI 294
           G + NG++F I T  +P LD   +V G+VL+GM+V  +I       E T +         
Sbjct: 111 GPNTNGSQFFITTAPTPWLDGRHVVFGKVLDGMDVVLRI-------EKTKT--------- 154

Query: 295 GDKRAVVAERGFNRPYSKVLVTNCG 319
                       +RP   V +   G
Sbjct: 155 ---------NSHDRPVKPVKIVASG 170

>3k2c_A Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH, niaid, SBRI, UW, decode, cytoplasm, rotamase, structural genomics; HET: PG5; 1.95A {Encephalitozoon cuniculi} Length = 193

 Score = 65.8 bits (161), Expect = 5e-13
 Identities = 22/89 (24%), Positives = 39/89 (43%)

Query: 72  LSRARADELPNADKNEQEQNCANKDPTKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARF 131
           ++      +   +   Q      K+ +  V+ D+  + +S GRIV+ L  D  P  A  F
Sbjct: 1   MAHHHHHHMGTLEAQTQGPGSMAKEASGNVYFDVYANEESLGRIVMKLEDDIVPKTAKNF 60

Query: 132 SSLVSGTAGISYRRKEFIKIMPNYVQHGG 160
            +L     G  Y+   F +I+P ++  GG
Sbjct: 61  RTLCERPKGEGYKGSTFHRIIPGFMVQGG 89

>3k2c_A Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH, niaid, SBRI, UW, decode, cytoplasm, rotamase, structural genomics; HET: PG5; 1.95A {Encephalitozoon cuniculi} Length = 193

 Score = 49.2 bits (118), Expect = 2e-07
 Identities = 22/85 (25%), Positives = 33/85 (38%), Gaps = 24/85 (28%)

Query: 235 GKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKIGEVKTVQENTGSPYFRVAKLI 294
           G   NG++F I    +  LD   +V G V+EGM+V  KI          GS         
Sbjct: 128 GAHTNGSQFFITLGKTQWLDEKHVVFGEVVEGMDVVHKI-------AKYGS--------- 171

Query: 295 GDKRAVVAERGFNRPYSKVLVTNCG 319
                   E G  +   ++ + +CG
Sbjct: 172 --------ESGQVKKGYRIEIRDCG 188

>3ich_A Peptidyl-prolyl CIS-trans isomerase B; beta sandwich, cyclosporin, endoplasmic reticulum, glycoprot isomerase, rotamase; 1.20A {Homo sapiens} PDB: 3ici_A* 1cyn_A* 2esl_A* 2rmc_A* 1h0p_A 1xo7_A 1xq7_A* Length = 188

 Score = 63.4 bits (155), Expect = 3e-12
 Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 2/70 (2%)

Query: 93  ANKDP--TKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIK 150
             K P  T +V+ D+ I  +  GR++ GL+G + P     F +L +G  G  Y+  +F +
Sbjct: 8   KKKGPKVTVKVYFDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHR 67

Query: 151 IMPNYVQHGG 160
           ++ +++  GG
Sbjct: 68  VIKDFMIQGG 77

>3ich_A Peptidyl-prolyl CIS-trans isomerase B; beta sandwich, cyclosporin, endoplasmic reticulum, glycoprot isomerase, rotamase; 1.20A {Homo sapiens} PDB: 3ici_A* 1cyn_A* 2esl_A* 2rmc_A* 1h0p_A 1xo7_A 1xq7_A* Length = 188

 Score = 51.0 bits (123), Expect = 5e-08
 Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 25/88 (28%)

Query: 235 GKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKIGEVKTVQENTGSPYFRVAKLI 294
           GKD NG++F I T  +  LD   +V G+VLEGMEV  K+       E+T +         
Sbjct: 116 GKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKV-------ESTKT--------- 159

Query: 295 GDKRAVVAERGFNRPYSKVLVTNCGLME 322
                       ++P   V++ +CG +E
Sbjct: 160 ---------DSRDKPLKDVIIADCGKIE 178

>3rdd_A Peptidyl-prolyl CIS-trans isomerase A; beta barrel, cytosolic, inhibito isomerase-isomerase inhibitor complex; HET: EA4; 2.14A {Homo sapiens} Length = 184

 Score = 62.2 bits (152), Expect = 6e-12
 Identities = 22/64 (34%), Positives = 34/64 (53%)

Query: 97  PTKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYV 156
               VF DI++DG+  GR+   L+ D  P  A  F +L +G  G  Y+   F +I+P ++
Sbjct: 21  VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFM 80

Query: 157 QHGG 160
             GG
Sbjct: 81  CQGG 84

>3rdd_A Peptidyl-prolyl CIS-trans isomerase A; beta barrel, cytosolic, inhibito isomerase-isomerase inhibitor complex; HET: EA4; 2.14A {Homo sapiens} Length = 184

 Score = 46.8 bits (112), Expect = 2e-06
 Identities = 22/88 (25%), Positives = 35/88 (39%), Gaps = 26/88 (29%)

Query: 235 GKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKIGEVKTVQENTGSPYFRVAKLI 294
           G + NG++F I T  +  LD   +V G+V EGM + E +       E  GS         
Sbjct: 123 GPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAM-------ERFGSRN------- 168

Query: 295 GDKRAVVAERGFNRPYSKVLVTNCGLME 322
                        +   K+ + +CG +E
Sbjct: 169 ------------GKTSKKITIADCGQLE 184

>2cmt_A Peptidyl-prolyl CIS-trans isomerase E; rotamase activity, rotamase, RNA-binding, cyclosporin, cyclophilin, beta-barrel; 1.50A {Schistosoma mansoni} PDB: 2ck1_A Length = 172

 Score = 62.2 bits (152), Expect = 7e-12
 Identities = 25/66 (37%), Positives = 33/66 (50%)

Query: 95  KDPTKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPN 154
           K    RVF DI I    AGRIV+ L  D  P  A  F +L +G  G  Y    F +++P 
Sbjct: 7   KRNLPRVFFDIRIGNGDAGRIVMELRSDIVPRTAENFRALCTGERGFGYHNCCFHRVIPQ 66

Query: 155 YVQHGG 160
           ++  GG
Sbjct: 67  FMCQGG 72

>2cmt_A Peptidyl-prolyl CIS-trans isomerase E; rotamase activity, rotamase, RNA-binding, cyclosporin, cyclophilin, beta-barrel; 1.50A {Schistosoma mansoni} PDB: 2ck1_A Length = 172

 Score = 47.9 bits (115), Expect = 5e-07
 Identities = 21/85 (24%), Positives = 34/85 (40%), Gaps = 26/85 (30%)

Query: 235 GKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKIGEVKTVQENTGSPYFRVAKLI 294
           G + NG++F I T     LD   +V GRV++G  V +K+       E+ GS         
Sbjct: 111 GPNTNGSQFFICTTKCDWLDGKHVVFGRVVDGQNVVKKM-------ESVGSKS------- 156

Query: 295 GDKRAVVAERGFNRPYSKVLVTNCG 319
                        +    V+++ CG
Sbjct: 157 ------------GKVKEPVIISRCG 169

>3pmp_A Cyclophilin A; peptidyl prolyl isomerase, isomerase-immunosuppressant compl; HET: BMT; 1.47A {Moniliophthora perniciosa} PDB: 3o7t_A Length = 164

 Score = 61.8 bits (151), Expect = 7e-12
 Identities = 23/61 (37%), Positives = 34/61 (55%)

Query: 100 RVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHG 159
            VF +ISI+ K  GRIV  LY ++ P  A  F  L +G  G  Y+   F +++P ++  G
Sbjct: 4   NVFFNISINDKPEGRIVFKLYDEAVPKTAKNFRELATGQHGFGYKDSIFHRVIPQFMLQG 63

Query: 160 G 160
           G
Sbjct: 64  G 64

>3pmp_A Cyclophilin A; peptidyl prolyl isomerase, isomerase-immunosuppressant compl; HET: BMT; 1.47A {Moniliophthora perniciosa} PDB: 3o7t_A Length = 164

 Score = 46.7 bits (112), Expect = 1e-06
 Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 26/85 (30%)

Query: 235 GKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKIGEVKTVQENTGSPYFRVAKLI 294
           G + NG++F I T  +  LD   +V G V+EG+++  K+       E  GS         
Sbjct: 103 GANTNGSQFFITTVPTSWLDGKHVVFGEVIEGLDIVRKV-------EGKGSAS------- 148

Query: 295 GDKRAVVAERGFNRPYSKVLVTNCG 319
                        +  + + +T+CG
Sbjct: 149 ------------GKTNATIKITDCG 161

>2z6w_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin D; HET: BMT MLE CIT; 0.96A {Homo sapiens} SCOP: b.62.1.1 PDB: 3rcg_A* 3r49_A* 3r54_A 3r56_A* 3r57_A* 3r59_A* 3rcf_A* 3r4g_A* 3rci_X* 3rck_X* 3rcl_A* 3rd9_X* 3rda_X* 3rdb_A* 3rdc_A* 2bit_X 2biu_X 3qyu_A 3k0m_A 1ak4_A* ... Length = 165

 Score = 61.8 bits (151), Expect = 8e-12
 Identities = 20/61 (32%), Positives = 34/61 (55%)

Query: 100 RVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHG 159
            V+LD+  +GK  GR+V+ L  D  P  A  F +L +G  G  Y+   F +++P+++   
Sbjct: 5   LVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQA 64

Query: 160 G 160
           G
Sbjct: 65  G 65

>2z6w_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin D; HET: BMT MLE CIT; 0.96A {Homo sapiens} SCOP: b.62.1.1 PDB: 3rcg_A* 3r49_A* 3r54_A 3r56_A* 3r57_A* 3r59_A* 3rcf_A* 3r4g_A* 3rci_X* 3rck_X* 3rcl_A* 3rd9_X* 3rda_X* 3rdb_A* 3rdc_A* 2bit_X 2biu_X 3qyu_A 3k0m_A 1ak4_A* ... Length = 165

 Score = 47.1 bits (113), Expect = 9e-07
 Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 26/85 (30%)

Query: 235 GKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKIGEVKTVQENTGSPYFRVAKLI 294
           G + NG++F I T  +  LD   +V G V+EGM+V +KI       E+ GS         
Sbjct: 104 GPNTNGSQFFICTIKTDWLDGKHVVFGHVIEGMDVVKKI-------ESFGSKS------- 149

Query: 295 GDKRAVVAERGFNRPYSKVLVTNCG 319
                        R   K+++T+CG
Sbjct: 150 ------------GRTSKKIVITDCG 162

>2r99_A Peptidyl-prolyl CIS-trans isomerase E; CIS-trans isomerization, structural genomics consortium, SGC, alternative splicing, mRNA processing; 1.61A {Homo sapiens} SCOP: b.62.1.1 PDB: 3uch_A 1zmf_A Length = 173

 Score = 61.4 bits (150), Expect = 1e-11
 Identities = 21/63 (33%), Positives = 32/63 (50%)

Query: 98  TKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQ 157
             +V++DI I  K AGRI + L  D  P  A  F  L +   G  ++   F +I+P ++ 
Sbjct: 11  NPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMC 70

Query: 158 HGG 160
            GG
Sbjct: 71  QGG 73

>2r99_A Peptidyl-prolyl CIS-trans isomerase E; CIS-trans isomerization, structural genomics consortium, SGC, alternative splicing, mRNA processing; 1.61A {Homo sapiens} SCOP: b.62.1.1 PDB: 3uch_A 1zmf_A Length = 173

 Score = 47.5 bits (114), Expect = 8e-07
 Identities = 21/85 (24%), Positives = 34/85 (40%), Gaps = 26/85 (30%)

Query: 235 GKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKIGEVKTVQENTGSPYFRVAKLI 294
           G + NG++F +    +  LD   +V G V EG++V  +I       E  GS         
Sbjct: 112 GPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQI-------EAQGSKD------- 157

Query: 295 GDKRAVVAERGFNRPYSKVLVTNCG 319
                        +P  KV++ +CG
Sbjct: 158 ------------GKPKQKVIIADCG 170

>2he9_A NK-tumor recognition protein; cyclosporin, isomerase, membrane, repeat, rotamase, peptidylprolyl isomerase, structural genomics; 2.00A {Homo sapiens} Length = 192

 Score = 59.5 bits (145), Expect = 8e-11
 Identities = 19/89 (21%), Positives = 37/89 (41%), Gaps = 8/89 (8%)

Query: 80  LPNADKNEQEQNCANKDPTKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTA 139
           + ++  +    +      + +   DI I+ +  GRI+  L+ D  P     F  L SG  
Sbjct: 1   MGSSHHHHHHSSGLVPRGSPQCHFDIEINREPVGRIMFQLFSDICPKTCKNFLCLCSGEK 60

Query: 140 GIS--------YRRKEFIKIMPNYVQHGG 160
           G+         Y+   F +++ N++  GG
Sbjct: 61  GLGKTTGKKLCYKGSTFHRVVKNFMIQGG 89

>2he9_A NK-tumor recognition protein; cyclosporin, isomerase, membrane, repeat, rotamase, peptidylprolyl isomerase, structural genomics; 2.00A {Homo sapiens} Length = 192

 Score = 51.8 bits (125), Expect = 4e-08
 Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 25/88 (28%)

Query: 235 GKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKIGEVKTVQENTGSPYFRVAKLI 294
           GK  NG++F I TK +P LD   +V G V+ G EV E+I       EN  +         
Sbjct: 128 GKHTNGSQFFITTKPAPHLDGVHVVFGLVISGFEVIEQI-------ENLKT--------- 171

Query: 295 GDKRAVVAERGFNRPYSKVLVTNCGLME 322
                   +   +RPY+ V V +CG++ 
Sbjct: 172 --------DAA-SRPYADVRVIDCGVLA 190

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370

 Score = 60.9 bits (148), Expect = 1e-10
 Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 8/69 (11%)

Query: 100 RVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGI--------SYRRKEFIKI 151
           RVF D+ I G+  GRIV+ L+ D  P  A  F +L +G  GI         ++   F +I
Sbjct: 17  RVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRI 76

Query: 152 MPNYVQHGG 160
           +  ++  GG
Sbjct: 77  IKKFMIQGG 85

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370

 Score = 50.5 bits (121), Expect = 3e-07
 Identities = 21/88 (23%), Positives = 36/88 (40%), Gaps = 26/88 (29%)

Query: 235 GKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKIGEVKTVQENTGSPYFRVAKLI 294
           G + NG++F I T  +P LD   +V G+V++GM VA+ +       EN            
Sbjct: 124 GSNTNGSQFFITTVPTPHLDGKHVVFGQVIKGMGVAKIL-------ENVEVKG------- 169

Query: 295 GDKRAVVAERGFNRPYSKVLVTNCGLME 322
                        +P    ++  CG ++
Sbjct: 170 ------------EKPAKLCVIAECGELK 185

>1a58_A Cyclophilin; isomerase, ppiase; 1.95A {Brugia malayi} SCOP: b.62.1.1 PDB: 1a33_A 1c5f_A* Length = 177

 Score = 58.3 bits (142), Expect = 1e-10
 Identities = 29/74 (39%), Positives = 40/74 (54%), Gaps = 8/74 (10%)

Query: 95  KDPTKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGIS--------YRRK 146
           K   +RVFLD++IDG  AGRIV+ LY D AP     F  L +G AG          Y+  
Sbjct: 3   KKDRRRVFLDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGS 62

Query: 147 EFIKIMPNYVQHGG 160
            F +++ N++  GG
Sbjct: 63  TFHRVIKNFMIQGG 76

>1a58_A Cyclophilin; isomerase, ppiase; 1.95A {Brugia malayi} SCOP: b.62.1.1 PDB: 1a33_A 1c5f_A* Length = 177

 Score = 51.8 bits (125), Expect = 3e-08
 Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 25/85 (29%)

Query: 235 GKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKIGEVKTVQENTGSPYFRVAKLI 294
           G + NG++F I T  +P L+   +V G+V+ G EV  KI       E   +         
Sbjct: 115 GPNTNGSQFFITTTPAPHLNNIHVVFGKVVSGQEVVTKI-------EYLKT--------- 158

Query: 295 GDKRAVVAERGFNRPYSKVLVTNCG 319
                       NRP + V++ NCG
Sbjct: 159 ---------NSKNRPLADVVILNCG 174

>1v9t_A Cyclophilin B; beta barrel, isomerase-isomerase inhibitor complex; HET: NIT; 1.70A {Escherichia coli} SCOP: b.62.1.1 PDB: 1j2a_A* 1vai_A* 1clh_A Length = 166

 Score = 57.6 bits (140), Expect = 2e-10
 Identities = 41/181 (22%), Positives = 68/181 (37%), Gaps = 62/181 (34%)

Query: 111 SAGRIVIGLYGDSAPAGAARFSSLVS-----GTAGISYRRKEFIKIMPNYVQHGGVRSYG 165
           SAG I + L    AP     F   V+      T         F +++P ++  GG    G
Sbjct: 12  SAGNIELELDKQKAPVSVQNFVDYVNSGFYNNTT--------FHRVIPGFMIQGG----G 59

Query: 166 VDAELARR-SGSNLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQ 224
              ++ ++     ++ E       A+N    G +N  GT+                +AR 
Sbjct: 60  FTEQMQQKKPNPPIKNE-------ADN----GLRNTRGTIA---------------MART 93

Query: 225 GKLEIDQEEVGKDPN--GTEFVIVTKDSPELDASSL-----VVGRVLEGMEVAEKIGEVK 277
                       D +   ++F I   D+  LD         V G+V++GM+VA+KI +V 
Sbjct: 94  A-----------DKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVP 142

Query: 278 T 278
           T
Sbjct: 143 T 143

>1z81_A Cyclophilin; structural genomics, structural genomics consortium, SGC, isomerase; 2.80A {Plasmodium yoelii yoelii} SCOP: b.62.1.1 Length = 229

 Score = 58.2 bits (141), Expect = 3e-10
 Identities = 18/96 (18%), Positives = 35/96 (36%), Gaps = 7/96 (7%)

Query: 70  FNLSRARADELPNADKNEQEQNCANKDPTKRVFLDISIDGKSAGRIVIGLYGDSAPAGAA 129
            NL     DE                +P   VF+DI++     G+    L+ +  P  + 
Sbjct: 33  ENLVLDDNDENTIIPYYLSNLLTNPSNP--VVFMDINLGNNFLGKFKFELFQNIVPKTSE 90

Query: 130 RFSSLVSGTAGIS-----YRRKEFIKIMPNYVQHGG 160
            F    +G   ++     Y+   F +++  ++  GG
Sbjct: 91  NFRQFCTGEYKVNNLPVGYKNTIFHRVIKEFMIQGG 126

>1z81_A Cyclophilin; structural genomics, structural genomics consortium, SGC, isomerase; 2.80A {Plasmodium yoelii yoelii} SCOP: b.62.1.1 Length = 229

 Score = 47.0 bits (112), Expect = 2e-06
 Identities = 20/87 (22%), Positives = 32/87 (36%), Gaps = 26/87 (29%)

Query: 235 GKDPNGTEFVIVTKDSPELDASSLVVGRVL--EGMEVAEKIGEVKTVQENTGSPYFRVAK 292
           G + NG +F I TK    LD  ++V GR++  + + + +KI       EN          
Sbjct: 165 GPNTNGCQFFITTKKCEWLDGKNVVFGRIIDNDSLLLLKKI-------ENVSV------- 210

Query: 293 LIGDKRAVVAERGFNRPYSKVLVTNCG 319
                          +P   + V  CG
Sbjct: 211 ----------TPYIYKPKIPINVVECG 227

>1mzw_A Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyclophilin, peptidyl-prolyl-CIS/trans isomerase, spliceosome, U4/U6-60K protein, WD protein; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1qoi_A Length = 177

 Score = 56.8 bits (138), Expect = 4e-10
 Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 5/73 (6%)

Query: 93  ANKDPTKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGIS-----YRRKE 147
            +      VF D+SI G+  GR+ I L+ D  P  A  F    +G          Y+   
Sbjct: 5   NSSPVNPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGST 64

Query: 148 FIKIMPNYVQHGG 160
           F +++ +++  GG
Sbjct: 65  FHRVIKDFMIQGG 77

>1mzw_A Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyclophilin, peptidyl-prolyl-CIS/trans isomerase, spliceosome, U4/U6-60K protein, WD protein; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1qoi_A Length = 177

 Score = 50.6 bits (122), Expect = 6e-08
 Identities = 20/85 (23%), Positives = 32/85 (37%), Gaps = 25/85 (29%)

Query: 235 GKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKIGEVKTVQENTGSPYFRVAKLI 294
           G   NG +F I       LD   +V G++++G+ V  KI       EN  +         
Sbjct: 116 GPSTNGCQFFITCSKCDWLDGKHVVFGKIIDGLLVMRKI-------ENVPTGP------- 161

Query: 295 GDKRAVVAERGFNRPYSKVLVTNCG 319
                       N+P   V+++ CG
Sbjct: 162 -----------NNKPKLPVVISQCG 175

>2wfi_A Peptidyl-prolyl CIS-trans isomerase G; phosphoprotein, PRE-mRNA splicing, alternative splicing, nucleus, rotamase, cyclosporin; HET: OCS; 0.75A {Homo sapiens} PDB: 2wfj_A* 2gw2_A Length = 179

 Score = 56.4 bits (137), Expect = 7e-10
 Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 8/69 (11%)

Query: 100 RVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGIS--------YRRKEFIKI 151
           R F DI+I+ + AGR+V  L+ D  P     F  L +G  G          Y+   F ++
Sbjct: 11  RCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRV 70

Query: 152 MPNYVQHGG 160
           + +++  GG
Sbjct: 71  VKDFMVQGG 79

>2wfi_A Peptidyl-prolyl CIS-trans isomerase G; phosphoprotein, PRE-mRNA splicing, alternative splicing, nucleus, rotamase, cyclosporin; HET: OCS; 0.75A {Homo sapiens} PDB: 2wfj_A* 2gw2_A Length = 179

 Score = 51.8 bits (125), Expect = 3e-08
 Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 25/85 (29%)

Query: 235 GKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKIGEVKTVQENTGSPYFRVAKLI 294
           GKD NG++F I TK +P LD   +V G+V+ G EV  +I       EN  +         
Sbjct: 118 GKDTNGSQFFITTKPTPHLDGHHVVFGQVISGQEVVREI-------ENQKT--------- 161

Query: 295 GDKRAVVAERGFNRPYSKVLVTNCG 319
                   +   ++P+++V + +CG
Sbjct: 162 --------DAA-SKPFAEVRILSCG 177

>2igv_A Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1.67A {Caenorhabditis elegans} SCOP: b.62.1.1 PDB: 1e3b_A 1e8k_A 1dyw_A 2igw_A 2hqj_A Length = 173

 Score = 55.6 bits (135), Expect = 1e-09
 Identities = 28/68 (41%), Positives = 39/68 (57%), Gaps = 7/68 (10%)

Query: 100 RVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKE-------FIKIM 152
           +VF DI+I GK++GRIV+ LY D  P  A  F +L +G  GI    K        F +I+
Sbjct: 5   KVFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRII 64

Query: 153 PNYVQHGG 160
           PN++  GG
Sbjct: 65  PNFMIQGG 72

>2igv_A Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1.67A {Caenorhabditis elegans} SCOP: b.62.1.1 PDB: 1e3b_A 1e8k_A 1dyw_A 2igw_A 2hqj_A Length = 173

 Score = 48.3 bits (116), Expect = 5e-07
 Identities = 20/88 (22%), Positives = 38/88 (43%), Gaps = 26/88 (29%)

Query: 235 GKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKIGEVKTVQENTGSPYFRVAKLI 294
           G + NG++F + T  +  LD   +V GRV+EG++V + +       E+ GS         
Sbjct: 111 GPNTNGSQFFLCTVKTEWLDGKHVVFGRVVEGLDVVKAV-------ESNGSQS------- 156

Query: 295 GDKRAVVAERGFNRPYSKVLVTNCGLME 322
                        +P    ++ +CG ++
Sbjct: 157 ------------GKPVKDCMIADCGQLK 172

>2ose_A Probable peptidyl-prolyl CIS-trans isomerase; cyclophilin; 2.04A {Mimivirus} Length = 234

 Score = 56.3 bits (136), Expect = 1e-09
 Identities = 16/53 (30%), Positives = 25/53 (47%)

Query: 93  ANKDPTKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRR 145
            N     RV++DI ++ +  GR+ I L+ D+ PAG   F  L +G        
Sbjct: 9   PNSGKNPRVYMDIVLNNEIIGRLQIKLFRDAFPAGVENFVQLTNGKTYRVNSN 61

>2ose_A Probable peptidyl-prolyl CIS-trans isomerase; cyclophilin; 2.04A {Mimivirus} Length = 234

 Score = 44.4 bits (105), Expect = 1e-05
 Identities = 17/94 (18%), Positives = 28/94 (29%), Gaps = 31/94 (32%)

Query: 235 GKDPNGTEFVI------VTKDSPELDASSLVVGRVLEGMEVAEKIGEVKTVQENTGSPYF 288
           G     + F+I       +    ELD   +V+G+V  G++V +KI  +            
Sbjct: 139 GNRYYDSTFMITLDDIRPSNVLDELDRDQVVIGQVYGGLDVLDKINSMIKPYA------- 191

Query: 289 RVAKLIGDKRAVVAERGFNRPYSKVLVTNCGLME 322
                              R Y    +  CG   
Sbjct: 192 ------------------GRKYPTFSIGKCGAYL 207

>2c3b_A Ppiase, cyclophilin; isomerase, 3D domain swapping, misfolding, Asp F 11, allergen, rotamase; 1.85A {Aspergillus fumigatus} SCOP: b.62.1.1 Length = 172

 Score = 55.3 bits (134), Expect = 2e-09
 Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 5/66 (7%)

Query: 100 RVFLDIS-----IDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPN 154
           +VF D+            GRIV  L+    P  A  F  L    AG  YR   F +I+PN
Sbjct: 4   QVFFDVEYAPVGTAETKVGRIVFNLFDKDVPKTAKNFRELCKRPAGEGYRESTFHRIIPN 63

Query: 155 YVQHGG 160
           ++  GG
Sbjct: 64  FMIQGG 69

>2c3b_A Ppiase, cyclophilin; isomerase, 3D domain swapping, misfolding, Asp F 11, allergen, rotamase; 1.85A {Aspergillus fumigatus} SCOP: b.62.1.1 Length = 172

 Score = 45.7 bits (109), Expect = 3e-06
 Identities = 21/87 (24%), Positives = 32/87 (36%), Gaps = 26/87 (29%)

Query: 235 GKDPNGTEFVIVTKDSPELDASSLVVGRVLE--GMEVAEKIGEVKTVQENTGSPYFRVAK 292
           G + NG++F I T  +  LD   +V G V +     V ++I       E  GS       
Sbjct: 108 GPNTNGSQFFITTAVTSWLDGKHVVFGEVADEKSYSVVKEI-------EALGS------- 153

Query: 293 LIGDKRAVVAERGFNRPYSKVLVTNCG 319
                       G  R  ++  + NCG
Sbjct: 154 ----------SSGSVRSNTRPKIVNCG 170

>1qng_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, cyclophilin-cyclosporin complex, immunosuppressant, cyclophilin; HET: BMT; 2.1A {Plasmodium falciparum} SCOP: b.62.1.1 PDB: 1qnh_A* Length = 170

 Score = 54.8 bits (133), Expect = 2e-09
 Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 6/67 (8%)

Query: 100 RVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSG------TAGISYRRKEFIKIMP 153
           +VF DISID  +AGRI+  L+ D  P     F +L +G         + Y+   F +I+P
Sbjct: 5   KVFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHRIIP 64

Query: 154 NYVQHGG 160
            ++  GG
Sbjct: 65  QFMCQGG 71

>1qng_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, cyclophilin-cyclosporin complex, immunosuppressant, cyclophilin; HET: BMT; 2.1A {Plasmodium falciparum} SCOP: b.62.1.1 PDB: 1qnh_A* Length = 170

 Score = 48.6 bits (117), Expect = 3e-07
 Identities = 20/85 (23%), Positives = 32/85 (37%), Gaps = 26/85 (30%)

Query: 235 GKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKIGEVKTVQENTGSPYFRVAKLI 294
           G + N ++F I     P LD   +V G+V+EGM V  ++       E  G+         
Sbjct: 110 GPNTNSSQFFITLVPCPWLDGKHVVFGKVIEGMNVVREM-------EKEGAKS------- 155

Query: 295 GDKRAVVAERGFNRPYSKVLVTNCG 319
                             V++T+CG
Sbjct: 156 ------------GYVKRSVVITDCG 168

>2poy_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, isomerase, S genomics, structural genomics consortium; HET: BMT; 1.80A {Cryptosporidium parvum iowa II} PDB: 2plu_A* Length = 186

 Score = 54.9 bits (133), Expect = 3e-09
 Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 7/68 (10%)

Query: 100 RVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKE-------FIKIM 152
            V+ DISI    AGRI + L+ D  P  A  F +L +G  G+    K        F +I+
Sbjct: 21  VVYFDISIGQTPAGRITMELFADKVPITAENFRALCTGEKGMGQSGKPLCYTGSFFHRII 80

Query: 153 PNYVQHGG 160
           P ++  GG
Sbjct: 81  PQFMIQGG 88

>2poy_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, isomerase, S genomics, structural genomics consortium; HET: BMT; 1.80A {Cryptosporidium parvum iowa II} PDB: 2plu_A* Length = 186

 Score = 48.7 bits (117), Expect = 3e-07
 Identities = 26/86 (30%), Positives = 35/86 (40%), Gaps = 26/86 (30%)

Query: 235 GKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKIGEVKTVQENTGSPYFRVAKLI 294
           G + NG++F I T   P LD   +V G+VLEGMEV + I       E  GS         
Sbjct: 127 GPNTNGSQFFITTVPCPWLDGKHVVFGKVLEGMEVVKSI-------EKCGSQN------- 172

Query: 295 GDKRAVVAERGFNRPYSKVLVTNCGL 320
                        +P   V +T  G+
Sbjct: 173 ------------GKPTKSVCITASGV 186

>1lop_A Cyclophilin A; rotamase, isomerase-isomerase inhibitor complex; HET: NIT; 1.80A {Escherichia coli} SCOP: b.62.1.1 PDB: 2nul_A 2rs4_A Length = 164

 Score = 51.4 bits (124), Expect = 3e-08
 Identities = 39/184 (21%), Positives = 64/184 (34%), Gaps = 65/184 (35%)

Query: 111 SAGRIVIGLYGDSAPAGAARFSSLV-----SGTAGISYRRKEFIKIMPNYVQHGGVRSYG 165
           + G IVI  + D AP     F         + T  I      F +++  ++  GG    G
Sbjct: 7   NHGDIVIKTFDDKAPETVKNFLDYCREGFYNNT--I------FHRVINGFMIQGG----G 54

Query: 166 VDAELARR-SGSNLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQ 224
            +  + ++ +   ++ E       ANN    G KN  GT+                +AR 
Sbjct: 55  FEPGMKQKATKEPIKNE-------ANN----GLKNTRGTL---------------AMART 88

Query: 225 GKLEIDQEEVGKDPN--GTEFVIVTKDSPELDASSL--------VVGRVLEGMEVAEKIG 274
                        P+    +F I   D+  L+ S          V   V++GM+  +KI 
Sbjct: 89  Q-----------APHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVDGMDEVDKIK 137

Query: 275 EVKT 278
            V T
Sbjct: 138 GVAT 141

>3s6m_A Peptidyl-prolyl CIS-trans isomerase; seattle structural genomics center for infectious disease; 1.65A {Burkholderia pseudomallei} PDB: 3t1u_A* Length = 167

 Score = 51.0 bits (123), Expect = 4e-08
 Identities = 43/184 (23%), Positives = 68/184 (36%), Gaps = 65/184 (35%)

Query: 111 SAGRIVIGLYGDSAPAGAARFSSLVS-----GTAGISYRRKEFIKIMPNYVQHGGVRSYG 165
           + G I + L    AP     F + V      GT  I      F +++  ++  GG    G
Sbjct: 11  NHGVIKLELDEAKAPKTVENFLNYVKKGHYDGT--I------FHRVINGFMIQGG----G 58

Query: 166 VDAELARR-SGSNLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQ 224
            +  L ++ + + +  E       ANN    G KN   T+                +AR 
Sbjct: 59  FEPGLKQKPTDAPIANE-------ANN----GLKNDTYTI---------------AMART 92

Query: 225 GKLEIDQEEVGKDPN--GTEFVIVTKDSPELDASSL--------VVGRVLEGMEVAEKIG 274
                       DP+    +F I   D+  L+ SS         V G+V+EG ++ +KI 
Sbjct: 93  N-----------DPHSATAQFFINVNDNEFLNHSSPTPQGWGYAVFGKVVEGQDIVDKIK 141

Query: 275 EVKT 278
            VKT
Sbjct: 142 AVKT 145

>2ok3_A Peptidyl-prolyl CIS-trans isomerase-like 3; beta-barrel, helix, disulfide bridge; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1xyh_A 2oju_A* Length = 161

 Score = 47.6 bits (114), Expect = 7e-07
 Identities = 13/48 (27%), Positives = 27/48 (56%)

Query: 235 GKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKIGEVKTVQEN 282
           G + NG++F I     P LD    V G+V++G+E  +++ ++   ++ 
Sbjct: 93  GPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKLPVNEKT 140

>2x7k_A Peptidyl-prolyl CIS-trans isomerase-like 1; isomerase-immunosuppressant complex, immunosuppressant; HET: MLE MVA BMT ABA SAR; 1.15A {Homo sapiens} PDB: 1xwn_A Length = 166

 Score = 47.6 bits (114), Expect = 7e-07
 Identities = 14/44 (31%), Positives = 25/44 (56%)

Query: 235 GKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKIGEVKT 278
           G D NG++F +    +  LD    + GRV +G+ +  ++G V+T
Sbjct: 104 GPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVET 147

>2fu0_A Cyclophilin, putative; PFE0505W, cyclosporin-binding domain, structura genomics, structural genomics consortium, SGC, unknown FUNC; 1.80A {Plasmodium falciparum} SCOP: b.62.1.1 Length = 160

 Score = 47.2 bits (113), Expect = 8e-07
 Identities = 16/44 (36%), Positives = 25/44 (56%)

Query: 235 GKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKIGEVKT 278
           G + NG++F I T   P LD    V G+V +G ++   I +V+T
Sbjct: 98  GPNTNGSQFFITTVPCPWLDFKHTVFGKVTQGSKIVLDIEKVRT 141

>1zkc_A Peptidyl-prolyl CIS-trans isomerase like 2; CIS-trans isomerization, peptidylprolyl isomerase, protein- folding, structural genomics consortium; 1.65A {Homo sapiens} SCOP: b.62.1.1 Length = 197

 Score = 47.7 bits (114), Expect = 1e-06
 Identities = 12/48 (25%), Positives = 23/48 (47%)

Query: 235 GKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKIGEVKTVQEN 282
           G + N ++F I  +    LD    + GRV+ G +V   +  V++  + 
Sbjct: 112 GPNSNRSQFFITFRSCAYLDKKHTIFGRVVGGFDVLTAMENVESDPKT 159

>2k7n_A Peptidyl-prolyl CIS-trans isomerase-like 1; beta barrel, disorder-order transition, HOOK-like, mRNA processing, mRNA splicing, rotamase; NMR {Homo sapiens} Length = 203

 Score = 47.0 bits (112), Expect = 2e-06
 Identities = 14/44 (31%), Positives = 25/44 (56%)

Query: 235 GKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKIGEVKT 278
           G D NG++F +    +  LD    + GRV +G+ +  ++G V+T
Sbjct: 104 GPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVET 147

>2b71_A Cyclophilin-like protein; structural genomics, structural genomics consortium, SGC, isomerase; 2.50A {Plasmodium yoelii} SCOP: b.62.1.1 Length = 196

 Score = 46.9 bits (112), Expect = 2e-06
 Identities = 14/44 (31%), Positives = 20/44 (45%)

Query: 235 GKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKIGEVKT 278
           G + N ++F I     P LD    +  RV + M   E I  V+T
Sbjct: 131 GPNTNSSQFFITLAPLPHLDGKHTIFARVSKNMTCIENIASVQT 174

>3bo7_A Peptidyl-prolyl CIS-trans isomerase cyclophilin-T; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, structural G structural genomics consortium, SGC; HET: BMT; 2.35A {Toxoplasma gondii} Length = 201

 Score = 46.6 bits (111), Expect = 2e-06
 Identities = 14/44 (31%), Positives = 24/44 (54%)

Query: 235 GKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKIGEVKT 278
           GK  N +EF I  K    L+    + GRV+ G++V  +  +++T
Sbjct: 111 GKHSNLSEFFITFKSCEHLNNKHTIFGRVVGGLDVLRQWEKLET 154

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.3 bits (114), Expect = 2e-06
 Identities = 55/367 (14%), Positives = 100/367 (27%), Gaps = 99/367 (26%)

Query: 24  HPLVQNF-PTSRSLPSLKQTCNLSRRELT--LCGNS---SLLLL---WGSLVLEPFNL-- 72
           + +  N+   S    ++K   +  + EL   L        LL+L     +     FNL  
Sbjct: 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC 266

Query: 73  -----SRAR--ADELPNADKN----EQEQNCANKDPTKRVF---LDISIDG--KSAGRI- 115
                +R +   D L  A       +        D  K +    LD       +      
Sbjct: 267 KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN 326

Query: 116 --VIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIM--------PNYVQHGGVRSYG 165
              + +  +S   G A + +             +   I+        P   +      + 
Sbjct: 327 PRRLSIIAESIRDGLATWDNWK------HVNCDKLTTIIESSLNVLEPAEYRK----MF- 375

Query: 166 VDAELAR-RSGSNLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQ 224
               L+     +++ T  L   W    +             ++ +          LV +Q
Sbjct: 376 --DRLSVFPPSAHIPTILLSLIWFDVIKSDVMV--------VVNKLHKY-----SLVEKQ 420

Query: 225 GK------LEIDQEEVGKDPNGTEF--VIVTKDSP--ELDASSLV-----------VGRV 263
            K        I  E   K  N       IV   +     D+  L+           +G  
Sbjct: 421 PKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHH 480

Query: 264 LEGMEVAEKIGEVKTVQENTGSPYFRV--AKLIGDKRAVVAERGFN------RPYSKVLV 315
           L+ +E  E++   + V  +     FR    K+  D  A  A           + Y   + 
Sbjct: 481 LKNIEHPERMTLFRMVFLD-----FRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYIC 535

Query: 316 TNCGLME 322
            N    E
Sbjct: 536 DNDPKYE 542

>2a2n_A Peptidylprolyl isomerase domain and WD repeat CON; CIS-trans isomerization, protein-folding, peptidylprolyl ISO structural genomics; 1.65A {Homo sapiens} SCOP: b.62.1.1 Length = 176

 Score = 45.7 bits (109), Expect = 3e-06
 Identities = 19/48 (39%), Positives = 27/48 (56%)

Query: 235 GKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKIGEVKTVQEN 282
           G + NG++F I    +P LD    V GRV +GMEV ++I  VK   + 
Sbjct: 114 GSNTNGSQFFITVVPTPWLDNKHTVFGRVTKGMEVVQRISNVKVNPKT 161

>2poe_A Cyclophilin-like protein, putative; cryptosporidium parvum cyclophilin isomerase, structural genomics; 2.01A {Cryptosporidium parvum iowa II} PDB: 2qer_A Length = 185

 Score = 43.4 bits (103), Expect = 2e-05
 Identities = 9/40 (22%), Positives = 21/40 (52%)

Query: 239 NGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKIGEVKT 278
           NG++F I     P+L+   ++ G++++G E    +    +
Sbjct: 117 NGSQFFITYSSLPQLNGEYVIFGKLIDGFETLNTLENCPS 156

>3rfy_A Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; cyclophilin, peptidyl prolyl isomerase, ppiase, TLP,; 2.39A {Arabidopsis thaliana} Length = 369

 Score = 44.3 bits (104), Expect = 3e-05
 Identities = 42/289 (14%), Positives = 77/289 (26%), Gaps = 45/289 (15%)

Query: 3   QSQKILN-SSPQILPPTPSPKIHPLVQNFPT-SRSLPSLKQTCNLSRRELTLCGNSSLLL 60
           Q+ + L      I+      K     +        +  + +     +R+        +L 
Sbjct: 81  QASRTLQQGKSIIVAGFAESKKDHGNEMIEKLEAGMQDMLKIVEDRKRDAVAPKQKEIL- 139

Query: 61  LWGSLVLEPFNLSRARADELPNADKNEQEQNCANKDPTKRVFLDISIDGK-----SAGRI 115
                 +E         D  P     E            R  +D+ +  K          
Sbjct: 140 -KYVGGIEE-----DMVDGFPYEVPEEYRNM---PLLKGRASVDMKVKIKDNPNIEDCVF 190

Query: 116 VIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHGGVRSYGVDAELARRSG 175
            I L G +AP  A  F  LV       Y   E  +    +V   G      +        
Sbjct: 191 RIVLDGYNAPVTAGNFVDLVE--RHF-YDGMEIQRS-DGFVVQTGDPEGPAEGF---IDP 243

Query: 176 SNLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIKLV--ARQGKLEIDQEE 233
           S  +T  +  E     E+ P   +    +G+       P      +  AR+         
Sbjct: 244 STEKTRTVPLEIMVTGEKTPFYGSTLEELGLYKAQVVIPFNAFGTMAMARE--------- 294

Query: 234 VGKDPN--GTEFVIVTKDS-------PELDASSLVVGRVLEGMEVAEKI 273
              + +   ++   + K+S         LD    V G V +  +    +
Sbjct: 295 -EFENDSGSSQVFWLLKESELTPSNSNILDGRYAVFGYVTDNEDFLADL 342

>2hq6_A Serologically defined colon cancer antigen 10; protein folding, peptidyl-prolyl CIS-trans isomerase, struct genomics; 1.75A {Homo sapiens} Length = 185

 Score = 41.5 bits (98), Expect = 9e-05
 Identities = 10/45 (22%), Positives = 20/45 (44%), Gaps = 1/45 (2%)

Query: 235 GKDPNGTEFVIVTKDSPELDASSLVVGRVL-EGMEVAEKIGEVKT 278
           G   NG++F      + EL+    + G+V  + +    ++ EV  
Sbjct: 117 GSHDNGSQFFFTLGRADELNNKHTIFGKVTGDTVYNMLRLSEVDI 161

>1w74_A Peptidyl-prolyl CIS-trans isomerase A; cyclophilin, ppiase, RV0009, rotamase, structural proteomics in europe, spine; 2.6A {Mycobacterium tuberculosis} SCOP: b.62.1.1 Length = 191

 Score = 40.5 bits (95), Expect = 3e-04
 Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 2/46 (4%)

Query: 235 GKDPNGTEFVIVTKDSPELDASSLVVGRVL--EGMEVAEKIGEVKT 278
           G   NG++F I    +P L+    + G V+  E   V E I +  T
Sbjct: 128 GPGTNGSQFFITVGKTPHLNRRHTIFGEVIDAESQRVVEAISKTAT 173

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	322
2r99_A	173	Peptidyl-prolyl CIS-trans isomerase E; CIS-trans i	100.0
2cmt_A	172	Peptidyl-prolyl CIS-trans isomerase E; rotamase ac	100.0
2igv_A	173	Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1	100.0
3rdd_A	184	Peptidyl-prolyl CIS-trans isomerase A; beta barrel	100.0
4fru_A	185	Cyclophilin B, peptidyl-prolyl CIS-trans isomerase	100.0
1a58_A	177	Cyclophilin; isomerase, ppiase; 1.95A {Brugia mala	100.0
3pmp_A	164	Cyclophilin A; peptidyl prolyl isomerase, isomeras	100.0
2wfi_A	179	Peptidyl-prolyl CIS-trans isomerase G; phosphoprot	100.0
2haq_A	172	Cyclophilin; rotamase, proline, isomerase, CIS-tra	100.0
2z6w_A	165	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	100.0
1mzw_A	177	Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyc	100.0
2he9_A	192	NK-tumor recognition protein; cyclosporin, isomera	100.0
1qng_A	170	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	100.0
3ich_A	188	Peptidyl-prolyl CIS-trans isomerase B; beta sandwi	100.0
3k2c_A	193	Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH,	100.0
2poy_A	186	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	100.0
1z81_A	229	Cyclophilin; structural genomics, structural genom	100.0
2c3b_A	172	Ppiase, cyclophilin; isomerase, 3D domain swapping	100.0
2ose_A	234	Probable peptidyl-prolyl CIS-trans isomerase; cycl	100.0
2x7k_A	166	Peptidyl-prolyl CIS-trans isomerase-like 1; isomer	100.0
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	100.0
2poe_A	185	Cyclophilin-like protein, putative; cryptosporidiu	100.0
2fu0_A	160	Cyclophilin, putative; PFE0505W, cyclosporin-bindi	100.0
2b71_A	196	Cyclophilin-like protein; structural genomics, str	100.0
2k7n_A	203	Peptidyl-prolyl CIS-trans isomerase-like 1; beta b	100.0
1zkc_A	197	Peptidyl-prolyl CIS-trans isomerase like 2; CIS-tr	100.0
2ok3_A	161	Peptidyl-prolyl CIS-trans isomerase-like 3; beta-b	100.0
2a2n_A	176	Peptidylprolyl isomerase domain and WD repeat CON;	100.0
3bo7_A	201	Peptidyl-prolyl CIS-trans isomerase cyclophilin-T;	100.0
1v9t_A	166	Cyclophilin B; beta barrel, isomerase-isomerase in	100.0
1w74_A	191	Peptidyl-prolyl CIS-trans isomerase A; cyclophilin	100.0
1lop_A	164	Cyclophilin A; rotamase, isomerase-isomerase inhib	100.0
2hq6_A	185	Serologically defined colon cancer antigen 10; pro	100.0
3s6m_A	167	Peptidyl-prolyl CIS-trans isomerase; seattle struc	100.0
3bkp_A	232	Cyclophilin; malaria, isomerase, structural GENO s	100.0
3rfy_A	369	Peptidyl-prolyl CIS-trans isomerase CYP38, chloro;	100.0
3kop_A	188	Uncharacterized protein; protein with A cyclophili	89.6

>2r99_A Peptidyl-prolyl CIS-trans isomerase E; CIS-trans isomerization, structural genomics consortium, SGC, alternative splicing, mRNA processing; 1.61A {Homo sapiens} SCOP: b.62.1.1 PDB: 3uch_A 1zmf_A

Probab=100.00  E-value=2.3e-48  Score=341.40  Aligned_cols=165  Identities=25%  Similarity=0.489  Sum_probs=143.4

Q ss_pred             CCCCceEEEEEEeCCeeeeeEEEEecCCCCChhHHHHHHHhcCCCcccccCcEEEEeccCeeEeeCccccCcccccccCC
Q 020718           95 KDPTKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHGGVRSYGVDAELARRS  174 (322)
Q Consensus        95 ~~~~~~v~~di~i~g~~~GrIvIeL~~d~aP~tv~nF~~L~~~~~g~~Y~g~~f~Rvi~gfviQgGd~~~~~~~~~~~g~  174 (322)
                      ...+++||||++|++++.|+|+||||++.||+||+||++||++.+|++|+|+.||||+++|||||||+..+      +++
T Consensus         8 ~~~~~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~Y~g~~FhRvi~~f~iQgGd~~~~------~g~   81 (173)
T 2r99_A            8 ARSNPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMCQGGDFTNH------NGT   81 (173)
T ss_dssp             --CCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCCSTTCBEEEEETTTEEEECCTTTS------SSS
T ss_pred             ccCCCEEEEEEEECCccceeEEEEECCCCCcHHHHHHHHHhcccCCceecCCEEEEeeCCCEEEeCCcCCC------CCC
Confidence            34578999999999999999999999999999999999999866665699999999999999999998754      566


Q ss_pred             CC-CCccccchhhhccCCCCCCCCCCCCCceeeeecCCCCCCcchhhhhccCcceeeccccCCCCCcceEEEEcCCCCCC
Q 020718          175 GS-NLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPEL  253 (322)
Q Consensus       175 gg-~~~~~~~~~E~~~~~~~~~g~~~~~G~v~m~v~~~~~~~~~~~l~ar~G~l~m~~an~~p~s~gSqFfItl~~~p~L  253 (322)
                      |+ ++|++.|.+|....      .|+.+|+|+|                         +|.++|+|+|||||++.+.++|
T Consensus        82 gg~si~g~~f~dE~~~l------~h~~~G~lsm-------------------------A~~gp~t~gSQFfIt~~~~~~L  130 (173)
T 2r99_A           82 GGKSIYGKKFDDENFIL------KHTGPGLLSM-------------------------ANSGPNTNGSQFFLTCDKTDWL  130 (173)
T ss_dssp             CCCBTTBSCBCCCCCCS------CCCSSSEEEE-------------------------CCSSTTCBCSCEEEESSCCGGG
T ss_pred             CCCccCCCcccCcccCc------ccCCCcEEEE-------------------------ccCCCCCcccEEEEECCCCCcc
Confidence            66 77888887774322      2455666666                         5678999999999999999999


Q ss_pred             CCCCcEEEEEEcCHHHHHHHhcCccccCCCCCCcchhhhhccccchhhcccCCCCCCccEEEeeeeecC
Q 020718          254 DASSLVVGRVLEGMEVAEKIGEVKTVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNCGLME  322 (322)
Q Consensus       254 Dg~~~VFGrVi~Gmdvl~~I~~~~t~~~~~~~~~~~~~~~~gd~~~~~a~~~~~~P~~~V~I~~cG~l~  322 (322)
                      |++|+|||||++|||||++|++++++.                          ++|.++|+|.+||+|.
T Consensus       131 Dg~~tVFG~Vv~G~dvv~~I~~~~~~~--------------------------~~P~~~v~I~~cG~l~  173 (173)
T 2r99_A          131 DGKHVVFGEVTEGLDVLRQIEAQGSKD--------------------------GKPKQKVIIADCGEYV  173 (173)
T ss_dssp             TTTSCEEEEEEECHHHHHHHHTTCCTT--------------------------CCCSSCEEEEEEEECC
T ss_pred             CCCeeEEEEEEcCHHHHHHHHhCCCCC--------------------------CCCCCCeEEEEeeeEC
Confidence            999999999999999999999998864                          7999999999999984

>2cmt_A Peptidyl-prolyl CIS-trans isomerase E; rotamase activity, rotamase, RNA-binding, cyclosporin, cyclophilin, beta-barrel; 1.50A {Schistosoma mansoni} PDB: 2ck1_A

Probab=100.00  E-value=4.5e-48  Score=339.15  Aligned_cols=164  Identities=29%  Similarity=0.511  Sum_probs=142.8

Q ss_pred             CCCceEEEEEEeCCeeeeeEEEEecCCCCChhHHHHHHHhcCCCcccccCcEEEEeccCeeEeeCccccCcccccccCCC
Q 020718           96 DPTKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHGGVRSYGVDAELARRSG  175 (322)
Q Consensus        96 ~~~~~v~~di~i~g~~~GrIvIeL~~d~aP~tv~nF~~L~~~~~g~~Y~g~~f~Rvi~gfviQgGd~~~~~~~~~~~g~g  175 (322)
                      ..+++||||++|++++.|+|+||||++.||+||+||++||++.+|++|+|+.||||+++|||||||+..+      +++|
T Consensus         8 ~~~~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~~Y~g~~FhRvi~~f~iQgGd~~~~------~G~g   81 (172)
T 2cmt_A            8 RNLPRVFFDIRIGNGDAGRIVMELRSDIVPRTAENFRALCTGERGFGYHNCCFHRVIPQFMCQGGDFVKG------DGTG   81 (172)
T ss_dssp             -CCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCSSTTCBEEEEETTTEEEECCTTTS------SSSC
T ss_pred             CCCCEEEEEEEECCeecceEEEEEcCCCCCHHHHHHHHHhccCCCceECCCEEEEEECCCEEEcCCccCC------CCCC
Confidence            4478999999999999999999999999999999999999975564599999999999999999998754      5666


Q ss_pred             C-CCccccchhhhccCCCCCCCCCCCCCceeeeecCCCCCCcchhhhhccCcceeeccccCCCCCcceEEEEcCCCCCCC
Q 020718          176 S-NLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELD  254 (322)
Q Consensus       176 g-~~~~~~~~~E~~~~~~~~~g~~~~~G~v~m~v~~~~~~~~~~~l~ar~G~l~m~~an~~p~s~gSqFfItl~~~p~LD  254 (322)
                      + ++|++.|++|....      .|+.+|+|+|                         +|.++|+|+|||||++.+.++||
T Consensus        82 g~si~g~~f~dE~~~l------~h~~~G~lsm-------------------------A~~gp~t~gSQFfIt~~~~~~LD  130 (172)
T 2cmt_A           82 GKSIYGRKFDDENFQL------RHEGFGVLSM-------------------------ANSGPNTNGSQFFICTTKCDWLD  130 (172)
T ss_dssp             CCBTTBSCBCCCCCCS------CCCSTTEEEE-------------------------CCSSTTCBCSCEEEESSCCGGGT
T ss_pred             CCccCCCcccccccCc------ccCCceEEEE-------------------------eeCCCCCcccEEEEECCCCCccC
Confidence            6 67777787775322      2445666666                         56789999999999999999999


Q ss_pred             CCCcEEEEEEcCHHHHHHHhcCccccCCCCCCcchhhhhccccchhhcccCCCCCCccEEEeeeeecC
Q 020718          255 ASSLVVGRVLEGMEVAEKIGEVKTVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNCGLME  322 (322)
Q Consensus       255 g~~~VFGrVi~Gmdvl~~I~~~~t~~~~~~~~~~~~~~~~gd~~~~~a~~~~~~P~~~V~I~~cG~l~  322 (322)
                      ++|+|||+|++|||||++|++++++.                          ++|.++|+|.+||+|+
T Consensus       131 g~~tvFG~Vv~G~dvv~~I~~~~~~~--------------------------~~P~~~v~I~~~g~l~  172 (172)
T 2cmt_A          131 GKHVVFGRVVDGQNVVKKMESVGSKS--------------------------GKVKEPVIISRCGELI  172 (172)
T ss_dssp             TTSCEEEEEEECHHHHHHGGGGCCTT--------------------------CCCSSCEEEEEEEEEC
T ss_pred             CCeeEEEEEEcCHHHHHHHHhCCCCC--------------------------CCCCCCEEEEEeEeEC
Confidence            99999999999999999999998854                          7999999999999985

>2igv_A Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1.67A {Caenorhabditis elegans} SCOP: b.62.1.1 PDB: 1e3b_A 1e8k_A 1dyw_A 2igw_A 2hqj_A

Probab=100.00  E-value=3.8e-48  Score=339.99  Aligned_cols=162  Identities=30%  Similarity=0.644  Sum_probs=142.5

Q ss_pred             CceEEEEEEeCCeeeeeEEEEecCCCCChhHHHHHHHhcCCCcc-------cccCcEEEEeccCeeEeeCccccCccccc
Q 020718           98 TKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGI-------SYRRKEFIKIMPNYVQHGGVRSYGVDAEL  170 (322)
Q Consensus        98 ~~~v~~di~i~g~~~GrIvIeL~~d~aP~tv~nF~~L~~~~~g~-------~Y~g~~f~Rvi~gfviQgGd~~~~~~~~~  170 (322)
                      +++||||++|++++.|+|+||||++.||+||+||++||++.+|+       +|+|+.||||+++|||||||+..+     
T Consensus         3 ~~~v~~di~i~~~~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~g~~~~~~~Y~g~~FhRvi~~f~iQgGd~~~~-----   77 (173)
T 2igv_A            3 RSKVFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRIIPNFMIQGGDFTRG-----   77 (173)
T ss_dssp             CCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTCBCTTSSBSCCTTCBCCEEETTTEEEECCTTTS-----
T ss_pred             CCEEEEEEEECCEecceEEEEEeCCCCcHHHHHHHHHhcCCCCCCccCccceECCCEEEEEECCCEEEcCCCCCC-----
Confidence            67999999999999999999999999999999999999986553       699999999999999999998754     


Q ss_pred             ccCCCC-CCccccchhhhccCCCCCCCCCCCCCceeeeecCCCCCCcchhhhhccCcceeeccccCCCCCcceEEEEcCC
Q 020718          171 ARRSGS-NLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKD  249 (322)
Q Consensus       171 ~~g~gg-~~~~~~~~~E~~~~~~~~~g~~~~~G~v~m~v~~~~~~~~~~~l~ar~G~l~m~~an~~p~s~gSqFfItl~~  249 (322)
                       +++|+ ++|++.|++|....+      |+.+|+|+|                         +|.+||+|+|||||++.+
T Consensus        78 -~G~gg~siyg~~f~dE~~~l~------h~~~G~lsm-------------------------An~gp~tngSQFfIt~~~  125 (173)
T 2igv_A           78 -NGTGGESIYGEKFPDENFKEK------HTGPGVLSM-------------------------ANAGPNTNGSQFFLCTVK  125 (173)
T ss_dssp             -SSSCCCBTTBSCBCCCCCCSC------CCSTTEEEE-------------------------CCSSTTCBSSCEEEESSC
T ss_pred             -CCCCCCccCCCcccCcccccC------CCCCeEEEE-------------------------eeCCCCCcceEEEEEcCC
Confidence             56666 678888877753222      344666666                         567899999999999999


Q ss_pred             CCCCCCCCcEEEEEEcCHHHHHHHhcCccccCCCCCCcchhhhhccccchhhcccCCCCCCccEEEeeeeecC
Q 020718          250 SPELDASSLVVGRVLEGMEVAEKIGEVKTVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNCGLME  322 (322)
Q Consensus       250 ~p~LDg~~~VFGrVi~Gmdvl~~I~~~~t~~~~~~~~~~~~~~~~gd~~~~~a~~~~~~P~~~V~I~~cG~l~  322 (322)
                      .++||++|+|||+|++|||||++|+++++..                          ++|.++|+|.+||+|+
T Consensus       126 ~~~LDg~~~vFG~Vv~G~dvv~~I~~~~t~~--------------------------~~P~~~v~I~~~g~l~  172 (173)
T 2igv_A          126 TEWLDGKHVVFGRVVEGLDVVKAVESNGSQS--------------------------GKPVKDCMIADCGQLK  172 (173)
T ss_dssp             CGGGTTTSCEEEEEEECHHHHHHHHTTCCTT--------------------------SCCSSCEEEEEEEEEC
T ss_pred             ccccCCCeeEEEEEecCHHHHHHHHhCCCCC--------------------------CCCCCCEEEEEeEEEc
Confidence            9999999999999999999999999999854                          7999999999999986

>3rdd_A Peptidyl-prolyl CIS-trans isomerase A; beta barrel, cytosolic, inhibito isomerase-isomerase inhibitor complex; HET: EA4; 2.14A {Homo sapiens}

Probab=100.00  E-value=3.7e-48  Score=343.07  Aligned_cols=166  Identities=27%  Similarity=0.541  Sum_probs=143.2

Q ss_pred             CCCCCceEEEEEEeCCeeeeeEEEEecCCCCChhHHHHHHHhcCCCcccccCcEEEEeccCeeEeeCccccCcccccccC
Q 020718           94 NKDPTKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHGGVRSYGVDAELARR  173 (322)
Q Consensus        94 ~~~~~~~v~~di~i~g~~~GrIvIeL~~d~aP~tv~nF~~L~~~~~g~~Y~g~~f~Rvi~gfviQgGd~~~~~~~~~~~g  173 (322)
                      ....+++||||++|++++.|+|+||||++.||+||+||++||++++|+.|+|+.||||+++|||||||+..+      ++
T Consensus        18 ~~~~~p~v~~di~i~~~~~G~I~ieL~~~~aP~t~~NF~~L~~~~~g~~Y~g~~FhRvi~~f~iQgGd~~~~------~g   91 (184)
T 3rdd_A           18 QGMVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRH------NG   91 (184)
T ss_dssp             ---CCCEEEEEEEETTEEEEEEEEEECTTTSHHHHHHHHHHHHTTTSCSSTTCBCCEEETTTEEEECCTTTS------SS
T ss_pred             ccCCCCEEEEEEeECCEeeeEEEEEEeCCCCcHHHHHHHHHhccCcCcccCCCEEEEccCCcEEEeCCCCCC------CC
Confidence            345688999999999999999999999999999999999999988665599999999999999999997643      56


Q ss_pred             CCC-CCccccchhhhccCCCCCCCCCCCCCceeeeecCCCCCCcchhhhhccCcceeeccccCCCCCcceEEEEcCCCCC
Q 020718          174 SGS-NLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPE  252 (322)
Q Consensus       174 ~gg-~~~~~~~~~E~~~~~~~~~g~~~~~G~v~m~v~~~~~~~~~~~l~ar~G~l~m~~an~~p~s~gSqFfItl~~~p~  252 (322)
                      .|+ +++++.+.+|....+      ++.+|+|+|                         +|.++|+++|||||++++.++
T Consensus        92 ~gg~si~g~~~~de~~~l~------h~~~G~lsm-------------------------A~~gp~s~gSQFfIt~~~~~~  140 (184)
T 3rdd_A           92 TGGKSIYGEKFEDENFILK------HTGPGILSM-------------------------ANAGPNTNGSQFFICTAKTEW  140 (184)
T ss_dssp             SCCCBTTBSCBCCCCCCSC------CCSTTEEEE-------------------------CCSSTTCBSSCEEEESSCCGG
T ss_pred             CCCcccCCCcccCcccccc------cCCCcEEEE-------------------------EeCCCCCcccEEEEEeCCchh
Confidence            665 677777777643222      445666666                         567799999999999999999


Q ss_pred             CCCCCcEEEEEEcCHHHHHHHhcCccccCCCCCCcchhhhhccccchhhcccCCCCCCccEEEeeeeecC
Q 020718          253 LDASSLVVGRVLEGMEVAEKIGEVKTVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNCGLME  322 (322)
Q Consensus       253 LDg~~~VFGrVi~Gmdvl~~I~~~~t~~~~~~~~~~~~~~~~gd~~~~~a~~~~~~P~~~V~I~~cG~l~  322 (322)
                      ||++|+|||||++|||||++|+++++..                          ++|.++|+|.+||+||
T Consensus       141 LDg~~tVFG~Vv~G~dvv~~I~~~~~~~--------------------------g~P~~~v~I~~cG~l~  184 (184)
T 3rdd_A          141 LDGKHVVFGKVKEGMNIVEAMERFGSRN--------------------------GKTSKKITIADCGQLE  184 (184)
T ss_dssp             GTTTSCEEEEEEECHHHHHHHHTTCCTT--------------------------SCCSSCEEEEEEEECC
T ss_pred             hCCCceEEEEEecCHHHHHHHHhcCCCC--------------------------CCCcCCeEEEeCeEEC
Confidence            9999999999999999999999998754                          7999999999999997

>4fru_A Cyclophilin B, peptidyl-prolyl CIS-trans isomerase; cyclophilin-type ppiase, peptidyl-prolyl CIS-trans isomerase chaperone, foldase; HET: ME2 PEG; 1.10A {Equus caballus} PDB: 4frv_A* 3ich_A 3ici_A* 1cyn_A* 2esl_A* 2rmc_A* 1h0p_A 1xo7_A 1xq7_A*

Probab=100.00  E-value=1.6e-48  Score=345.88  Aligned_cols=167  Identities=32%  Similarity=0.616  Sum_probs=148.0

Q ss_pred             CCCCCceEEEEEEeCCeeeeeEEEEecCCCCChhHHHHHHHhcCCCcccccCcEEEEeccCeeEeeCccccCcccccccC
Q 020718           94 NKDPTKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHGGVRSYGVDAELARR  173 (322)
Q Consensus        94 ~~~~~~~v~~di~i~g~~~GrIvIeL~~d~aP~tv~nF~~L~~~~~g~~Y~g~~f~Rvi~gfviQgGd~~~~~~~~~~~g  173 (322)
                      ++..+++|||||+|++++.|+|+||||++.||+||+||++||++++|++|+|+.||||+++|||||||+..+      ++
T Consensus         8 ~p~~~~~v~~di~i~~~~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~~Y~g~~FhRvi~~f~iQgGd~~~~------~g   81 (185)
T 4fru_A            8 GPKVTVKVYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFGYKDSKFHRVIKDFMIQGGDFTRG------DG   81 (185)
T ss_dssp             EEEEEEEEEEEEEETTEEEEEEEEEECTTTSHHHHHHHHHHHHTTTSCCSTTCBCCEEETTTEEEECCTTTS------SS
T ss_pred             CCCcCcEEEEEEEECCEecceEEEEEeCCCCcHHHHHHHHHHhcCCCCeEcCCEEEEeeCCCeEEECCCCCC------CC
Confidence            356689999999999999999999999999999999999999987777899999999999999999998754      56


Q ss_pred             CCC-CCccccchhhhccCCCCCCCCCCCCCceeeeecCCCCCCcchhhhhccCcceeeccccCCCCCcceEEEEcCCCCC
Q 020718          174 SGS-NLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPE  252 (322)
Q Consensus       174 ~gg-~~~~~~~~~E~~~~~~~~~g~~~~~G~v~m~v~~~~~~~~~~~l~ar~G~l~m~~an~~p~s~gSqFfItl~~~p~  252 (322)
                      +|+ +++++.+++|....      .|+.+|+|+|                         +|.++|+|+|||||++.+.++
T Consensus        82 ~gg~si~g~~f~de~~~~------~h~~~G~lsm-------------------------a~~gp~t~~SQFfI~~~~~~~  130 (185)
T 4fru_A           82 TGGKSIYGERFPDENFKL------KHYGPGWVSM-------------------------ANAGKDTNGSQFFITTVKTAW  130 (185)
T ss_dssp             SCCCBTTBSCBCCCCCCS------CCCSTTEEEE-------------------------CCSSTTCBCSCEEEESSCCGG
T ss_pred             CCCccccCCccCcccccc------CcCCCeEEEE-------------------------eeCCCCCcceEEEEEeCCCcc
Confidence            666 67778787775432      2456777776                         567899999999999999999


Q ss_pred             CCCCCcEEEEEEcCHHHHHHHhcCccccCCCCCCcchhhhhccccchhhcccCCCCCCccEEEeeeeecC
Q 020718          253 LDASSLVVGRVLEGMEVAEKIGEVKTVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNCGLME  322 (322)
Q Consensus       253 LDg~~~VFGrVi~Gmdvl~~I~~~~t~~~~~~~~~~~~~~~~gd~~~~~a~~~~~~P~~~V~I~~cG~l~  322 (322)
                      ||++|+|||||++|||||++|++++++.+                         ++|.++|+|.+||+|+
T Consensus       131 Ld~~~~vFG~Vv~G~dvv~~I~~~~t~~~-------------------------~~P~~~v~I~~~g~l~  175 (185)
T 4fru_A          131 LDGKHVVFGKVLEGMEVVRKVETTKTDGR-------------------------DKPLKDVTIADCGKIE  175 (185)
T ss_dssp             GTTTSCEEEEEEECHHHHHHHHTSCBCTT-------------------------SCBSSCEEEEEEEEEE
T ss_pred             cCCCccEEEEEeCCHHHHHHHHhCCCCCC-------------------------CcCCCCEEEEEceEEe
Confidence            99999999999999999999999999876                         8999999999999973

>1a58_A Cyclophilin; isomerase, ppiase; 1.95A {Brugia malayi} SCOP: b.62.1.1 PDB: 1a33_A 1c5f_A*

Probab=100.00  E-value=5.6e-48  Score=340.08  Aligned_cols=164  Identities=35%  Similarity=0.608  Sum_probs=144.3

Q ss_pred             CCceEEEEEEeCCeeeeeEEEEecCCCCChhHHHHHHHhcCCCc--------ccccCcEEEEeccCeeEeeCccccCccc
Q 020718           97 PTKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAG--------ISYRRKEFIKIMPNYVQHGGVRSYGVDA  168 (322)
Q Consensus        97 ~~~~v~~di~i~g~~~GrIvIeL~~d~aP~tv~nF~~L~~~~~g--------~~Y~g~~f~Rvi~gfviQgGd~~~~~~~  168 (322)
                      .+++|||||+|++++.|+|+||||++.||+||+||++||++.++        .+|+|+.||||+++|||||||++.+   
T Consensus         5 ~~~~v~~di~i~~~~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~~~~~g~~~~Y~g~~FhRvi~~f~iQgGd~~~~---   81 (177)
T 1a58_A            5 DRRRVFLDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRVIKNFMIQGGDFTKG---   81 (177)
T ss_dssp             GCEEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBCCCTTCBEEEEETTTEEEECCCSSS---
T ss_pred             CCcEEEEEEEECCEeceeEEEEEcCCCCchHHHHHHHHhcCCcCcccccCCcceeCCCEEEEEECCCEEEeCCccCC---
Confidence            36799999999999999999999999999999999999997432        3799999999999999999998754   


Q ss_pred             ccccCCCC-CCccccchhhhccCCCCCCCCCCCCCceeeeecCCCCCCcchhhhhccCcceeeccccCCCCCcceEEEEc
Q 020718          169 ELARRSGS-NLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVT  247 (322)
Q Consensus       169 ~~~~g~gg-~~~~~~~~~E~~~~~~~~~g~~~~~G~v~m~v~~~~~~~~~~~l~ar~G~l~m~~an~~p~s~gSqFfItl  247 (322)
                         +++|+ ++|++.|.+|....      .|+.+|+|+|                         +|.++|+|+|||||++
T Consensus        82 ---~g~gg~si~g~~f~dE~~~~------~h~~~G~lsm-------------------------An~gp~tngSQFfIt~  127 (177)
T 1a58_A           82 ---DGTGGESIYGGMFDDEEFVM------KHDEPFVVSM-------------------------ANKGPNTNGSQFFITT  127 (177)
T ss_dssp             ---SSSCCCCTTSSCBCCCCCCS------CCCSSSEEEE-------------------------CCSSTTCBCSCEEEES
T ss_pred             ---CCCCCCcccCCcccCcccCc------ccCCCeEEEE-------------------------eeCCCCCceeEEEEEC
Confidence               56666 77888887775422      2556677766                         5678999999999999


Q ss_pred             CCCCCCCCCCcEEEEEEcCHHHHHHHhcCccccCCCCCCcchhhhhccccchhhcccCCCCCCccEEEeeeeecC
Q 020718          248 KDSPELDASSLVVGRVLEGMEVAEKIGEVKTVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNCGLME  322 (322)
Q Consensus       248 ~~~p~LDg~~~VFGrVi~Gmdvl~~I~~~~t~~~~~~~~~~~~~~~~gd~~~~~a~~~~~~P~~~V~I~~cG~l~  322 (322)
                      .++++||++|+|||+|++|||||++|++++++.+                         ++|.++|+|.+||+|.
T Consensus       128 ~~~~~LDg~~~VFG~Vv~G~dvv~~I~~~~~~~~-------------------------~~P~~~v~I~~~G~l~  177 (177)
T 1a58_A          128 TPAPHLNNIHVVFGKVVSGQEVVTKIEYLKTNSK-------------------------NRPLADVVILNCGELV  177 (177)
T ss_dssp             SCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTT-------------------------SCBSSCEEEEEEEEEC
T ss_pred             CCCCccCCCEEEEEEEEcCHHHHHHHHhCCCCCC-------------------------CcCCCCeEEEEeEEEC
Confidence            9999999999999999999999999999999876                         7999999999999973

>3pmp_A Cyclophilin A; peptidyl prolyl isomerase, isomerase-immunosuppressant compl; HET: BMT; 1.47A {Moniliophthora perniciosa} SCOP: b.62.1.1 PDB: 3o7t_A

Probab=100.00  E-value=6.2e-48  Score=335.99  Aligned_cols=162  Identities=27%  Similarity=0.565  Sum_probs=141.6

Q ss_pred             CceEEEEEEeCCeeeeeEEEEecCCCCChhHHHHHHHhcCCCcccccCcEEEEeccCeeEeeCccccCcccccccCCCC-
Q 020718           98 TKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHGGVRSYGVDAELARRSGS-  176 (322)
Q Consensus        98 ~~~v~~di~i~g~~~GrIvIeL~~d~aP~tv~nF~~L~~~~~g~~Y~g~~f~Rvi~gfviQgGd~~~~~~~~~~~g~gg-  176 (322)
                      +++|||||+|++++.|+|+||||++.||+||+||++||++++++.|+|+.||||+++||+||||+..+      +++|+ 
T Consensus         2 ~p~vf~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~L~~g~~g~~Y~g~~fhRvi~~f~iQgGd~~~~------~g~gg~   75 (164)
T 3pmp_A            2 MANVFFNISINDKPEGRIVFKLYDEAVPKTAKNFRELATGQHGFGYKDSIFHRVIPQFMLQGGDFTRH------NGTGGK   75 (164)
T ss_dssp             CCCEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCSSTTCBEEEEETTTEEEECCTTTS------SSSCCC
T ss_pred             CCEEEEEEEECCEEeeEEEEEEeCCCCcHHHHHHHHHhcccCCCcccCCEEEEEECCCeEEeCCCCCC------CCCCCc
Confidence            57899999999999999999999999999999999999976665599999999999999999996543      56666 


Q ss_pred             CCccccchhhhccCCCCCCCCCCCCCceeeeecCCCCCCcchhhhhccCcceeeccccCCCCCcceEEEEcCCCCCCCCC
Q 020718          177 NLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDAS  256 (322)
Q Consensus       177 ~~~~~~~~~E~~~~~~~~~g~~~~~G~v~m~v~~~~~~~~~~~l~ar~G~l~m~~an~~p~s~gSqFfItl~~~p~LDg~  256 (322)
                      +++++.+++|....      .|+.+|+|+|                         +|.++|+++|||||++.+.++||++
T Consensus        76 si~g~~~~dE~~~l------~h~~~G~lsm-------------------------a~~g~~t~~SQFfIt~~~~~~Ld~~  124 (164)
T 3pmp_A           76 SIYGEKFADENFQV------KHTKPGLLSM-------------------------ANAGANTNGSQFFITTVPTSWLDGK  124 (164)
T ss_dssp             BTTBSCBCCCCCCS------CCCSTTEEEE-------------------------CBSSTTCBCSCEEEESSCCGGGTTT
T ss_pred             ccCCcccccccccc------CcCCCcEEEE-------------------------eeCCCCCcccEEEEECCCChhhCCC
Confidence            67788887773322      2445566666                         5677999999999999999999999


Q ss_pred             CcEEEEEEcCHHHHHHHhcCccccCCCCCCcchhhhhccccchhhcccCCCCCCccEEEeeeeecC
Q 020718          257 SLVVGRVLEGMEVAEKIGEVKTVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNCGLME  322 (322)
Q Consensus       257 ~~VFGrVi~Gmdvl~~I~~~~t~~~~~~~~~~~~~~~~gd~~~~~a~~~~~~P~~~V~I~~cG~l~  322 (322)
                      |+|||||++|||||++|++++++.                          ++|.++|+|.+||+|+
T Consensus       125 ~~vFG~Vv~G~~vv~~I~~~~~~~--------------------------~~P~~~v~I~~cg~l~  164 (164)
T 3pmp_A          125 HVVFGEVIEGLDIVRKVEGKGSAS--------------------------GKTNATIKITDCGTVA  164 (164)
T ss_dssp             SCEEEEEEECHHHHHHHHTTCCTT--------------------------CCCSSCEEEEEEEEC-
T ss_pred             ccEEEEEeCCHHHHHHHHhCCCCC--------------------------CCcccCEEEEeCeEEC
Confidence            999999999999999999999874                          7999999999999986

>2wfi_A Peptidyl-prolyl CIS-trans isomerase G; phosphoprotein, PRE-mRNA splicing, alternative splicing, nucleus, rotamase, cyclosporin; HET: OCS; 0.75A {Homo sapiens} PDB: 2wfj_A* 2gw2_A

Probab=100.00  E-value=7.8e-48  Score=339.69  Aligned_cols=164  Identities=31%  Similarity=0.567  Sum_probs=143.5

Q ss_pred             CCCceEEEEEEeCCeeeeeEEEEecCCCCChhHHHHHHHhcCCCc--------ccccCcEEEEeccCeeEeeCccccCcc
Q 020718           96 DPTKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAG--------ISYRRKEFIKIMPNYVQHGGVRSYGVD  167 (322)
Q Consensus        96 ~~~~~v~~di~i~g~~~GrIvIeL~~d~aP~tv~nF~~L~~~~~g--------~~Y~g~~f~Rvi~gfviQgGd~~~~~~  167 (322)
                      ..+++||||++|++++.|+|+||||++.||+||+||++||++.++        .+|+|+.||||+++|||||||++.+  
T Consensus         7 ~~~~~vf~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~~~~~~~~~Y~g~~FhRvi~~f~iQgGd~~~~--   84 (179)
T 2wfi_A            7 VQRPRCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRVVKDFMVQGGDFSEG--   84 (179)
T ss_dssp             -CCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBSCCTTCBEEEEETTTEEEECCTTTS--
T ss_pred             CCCCeEEEEEEECCccceEEEEEEcCCCCChHHHHHHHHhcCCcCcccccccCCeECCCEEEEEECCCEEEcccccCC--
Confidence            347899999999999999999999999999999999999985432        3799999999999999999998754  


Q ss_pred             cccccCCCC-CCccccchhhhccCCCCCCCCCCCCCceeeeecCCCCCCcchhhhhccCcceeeccccCCCCCcceEEEE
Q 020718          168 AELARRSGS-NLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIV  246 (322)
Q Consensus       168 ~~~~~g~gg-~~~~~~~~~E~~~~~~~~~g~~~~~G~v~m~v~~~~~~~~~~~l~ar~G~l~m~~an~~p~s~gSqFfIt  246 (322)
                          +++|+ ++|++.|++|....      .|+.+|+|+|                         +|.+||+|+|||||+
T Consensus        85 ----~g~gg~si~g~~f~dE~~~~------~h~~~G~lsM-------------------------An~gp~tngSQFfIt  129 (179)
T 2wfi_A           85 ----NGRGGESIYGGFFEDESFAV------KHNKEFLLSM-------------------------ANRGKDTNGSQFFIT  129 (179)
T ss_dssp             ----SSSCCCCTTSSCBCCCCCCS------CCCSTTEEEE-------------------------CCSSTTCBCSCEEEE
T ss_pred             ----CCCCCCcccCCcccccccCc------CcCCCeEEEE-------------------------EeCCCCCcceEEEEE
Confidence                56666 77888888775432      2455666666                         567899999999999


Q ss_pred             cCCCCCCCCCCcEEEEEEcCHHHHHHHhcCccccCCCCCCcchhhhhccccchhhcccCCCCCCccEEEeeeeec
Q 020718          247 TKDSPELDASSLVVGRVLEGMEVAEKIGEVKTVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNCGLM  321 (322)
Q Consensus       247 l~~~p~LDg~~~VFGrVi~Gmdvl~~I~~~~t~~~~~~~~~~~~~~~~gd~~~~~a~~~~~~P~~~V~I~~cG~l  321 (322)
                      +.++++||++|+|||||++|||||++|++++++.+                         ++|.++|+|.+||+|
T Consensus       130 ~~~~~~LDg~~tVFG~Vv~G~dvv~~I~~~~t~~~-------------------------~~P~~~v~I~~~G~l  179 (179)
T 2wfi_A          130 TKPTPHLDGHHVVFGQVISGQEVVREIENQKTDAA-------------------------SKPFAEVRILSCGEL  179 (179)
T ss_dssp             SSCCGGGTTTSCEEEEEEECHHHHHHHHTCCBCTT-------------------------SCBSSCEEEEEEEEC
T ss_pred             cCCCcccCCCeeEEEEEeCCHHHHHHHHcCCCCCC-------------------------CCCCCCeEEEeCeeC
Confidence            99999999999999999999999999999999876                         799999999999987

>2haq_A Cyclophilin; rotamase, proline, isomerase, CIS-trans, protozoa, KAla-AZAR.; 1.97A {Leishmania donovani} PDB: 3eov_A* 3bt8_A

Probab=100.00  E-value=7e-48  Score=337.75  Aligned_cols=165  Identities=31%  Similarity=0.603  Sum_probs=143.8

Q ss_pred             CCCCCceEEEEEEeCCeeeeeEEEEecCCCCChhHHHHHHHhcCCCcccccCcEEEEeccCeeEeeCccccCcccccccC
Q 020718           94 NKDPTKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHGGVRSYGVDAELARR  173 (322)
Q Consensus        94 ~~~~~~~v~~di~i~g~~~GrIvIeL~~d~aP~tv~nF~~L~~~~~g~~Y~g~~f~Rvi~gfviQgGd~~~~~~~~~~~g  173 (322)
                      ++.++++||||++|++++.|+|+||||++.||+||+||++||++.+++.|+|+.||||+++|||||||+..+      ++
T Consensus         7 ~~~~~~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~Y~g~~FhRvi~~f~iQgGd~~~~------~g   80 (172)
T 2haq_A            7 EPEVTAKVYFDVMIDSEPLGRITIGLFGKDAPLTTENFRQLCTGEHGFGYKDSIFHRVIQNFMIQGGDFTNF------DG   80 (172)
T ss_dssp             CCCCCEEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCCSTTCBCCEEETTTEEEECCTTTS------SS
T ss_pred             CCCCCCeEEEEEEECCEecceEEEEEeCCCCcHHHHHHHHHhccCCCcccCCCEEEEEECCCEEecCCccCC------CC
Confidence            356689999999999999999999999999999999999999655553499999999999999999996543      56


Q ss_pred             CCC-CCccccchhhhccCCCCCCCCCCCCCceeeeecCCCCCCcchhhhhccCcceeeccccCCCCCcceEEEEcCCCCC
Q 020718          174 SGS-NLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPE  252 (322)
Q Consensus       174 ~gg-~~~~~~~~~E~~~~~~~~~g~~~~~G~v~m~v~~~~~~~~~~~l~ar~G~l~m~~an~~p~s~gSqFfItl~~~p~  252 (322)
                      +|+ ++|++.|++|...       +.|.+|+|+|                         +|.++|+|+|||||+++++++
T Consensus        81 ~gg~si~g~~f~dE~~~-------l~h~~G~lsm-------------------------An~gp~tngSQFfIt~~~~~~  128 (172)
T 2haq_A           81 TGGKSIYGEKFADENLN-------VKHFVGALSM-------------------------ANAGPNTNGSQFFITTAPTPW  128 (172)
T ss_dssp             SCCCCSSSSCBCCCCCC-------SCCCTTEEEE-------------------------CCSSTTCBCSCEEEESSCCGG
T ss_pred             CCCccccCCcccCcCCC-------cccCceEEEE-------------------------ccCCCCCcccEEEEECCCCCc
Confidence            666 7788888877322       2333777776                         567899999999999999999


Q ss_pred             CCCCCcEEEEEEcCHHHHHHHhcCccccCCCCCCcchhhhhccccchhhcccCCCCCCccEEEeeeeec
Q 020718          253 LDASSLVVGRVLEGMEVAEKIGEVKTVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNCGLM  321 (322)
Q Consensus       253 LDg~~~VFGrVi~Gmdvl~~I~~~~t~~~~~~~~~~~~~~~~gd~~~~~a~~~~~~P~~~V~I~~cG~l  321 (322)
                      ||++|+|||||++|||||++|++++++.+                         ++|.++|+|.+||+|
T Consensus       129 LDg~~~vFG~Vv~G~dvv~~I~~~~t~~~-------------------------~~P~~~v~I~~~g~l  172 (172)
T 2haq_A          129 LDGRHVVFGKVLDGMDVVLRIEKTKTNSH-------------------------DRPVKPVKIVASGEL  172 (172)
T ss_dssp             GTTTSCEEEEEEECHHHHHHHHTSCBCGG-------------------------GCBSSCEEEEEEEEC
T ss_pred             cCCCEeEEEEEeCCHHHHHHHHhCCcCCC-------------------------CcCCCCeEEEEeEEC
Confidence            99999999999999999999999999875                         699999999999987

>2z6w_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin D; HET: BMT MLE CIT; 0.96A {Homo sapiens} SCOP: b.62.1.1 PDB: 3rcg_A* 3r49_A* 3r54_A 3r56_A* 3r57_A* 3r59_A* 3rcf_A* 3r4g_A* 3rci_X* 3rck_X* 3rcl_A* 3rd9_X* 3rda_X* 3rdb_A* 3rdc_A* 2bit_X 2biu_X 3qyu_A 3k0m_A 1ak4_A* ...

Probab=100.00  E-value=1.3e-47  Score=334.25  Aligned_cols=162  Identities=28%  Similarity=0.553  Sum_probs=140.8

Q ss_pred             CceEEEEEEeCCeeeeeEEEEecCCCCChhHHHHHHHhcCCCcccccCcEEEEeccCeeEeeCccccCcccccccCCCC-
Q 020718           98 TKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHGGVRSYGVDAELARRSGS-  176 (322)
Q Consensus        98 ~~~v~~di~i~g~~~GrIvIeL~~d~aP~tv~nF~~L~~~~~g~~Y~g~~f~Rvi~gfviQgGd~~~~~~~~~~~g~gg-  176 (322)
                      +++|||||+|+++++|+|+||||++.||+||+||++||++.+++.|+|+.||||+++|||||||+..+      +++|+ 
T Consensus         3 ~~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~Y~g~~fhRvi~~f~iQgGd~~~~------~g~gg~   76 (165)
T 2z6w_A            3 NPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNH------NGTGGK   76 (165)
T ss_dssp             CCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCCSTTCBEEEEETTTEEEECCTTTS------SSSCCC
T ss_pred             CCEEEEEEEECCEeeeEEEEEEeCCCCcHHHHHHHHHhccCCCccCcCCEEEEEECCCEEEeCCccCC------CCCCCC
Confidence            67999999999999999999999999999999999999955554499999999999999999998654      56666 


Q ss_pred             CCccccchhhhccCCCCCCCCCCCCCceeeeecCCCCCCcchhhhhccCcceeeccccCCCCCcceEEEEcCCCCCCCCC
Q 020718          177 NLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDAS  256 (322)
Q Consensus       177 ~~~~~~~~~E~~~~~~~~~g~~~~~G~v~m~v~~~~~~~~~~~l~ar~G~l~m~~an~~p~s~gSqFfItl~~~p~LDg~  256 (322)
                      ++|++.|++|....+      |..+|+|+|                         +|.++|+++|||||++.+.++||++
T Consensus        77 si~g~~f~dE~~~l~------h~~~G~lsm-------------------------A~~gp~s~~SQFfI~~~~~~~Ldg~  125 (165)
T 2z6w_A           77 SIYGSRFPDENFTLK------HVGPGVLSM-------------------------ANAGPNTNGSQFFICTIKTDWLDGK  125 (165)
T ss_dssp             BTTBSCBCCCCCCSC------CCSTTEEEE-------------------------CCSSTTCBCSCEEEESSCCGGGTTT
T ss_pred             cccCCcccCcccccc------cCCCCEEEE-------------------------eeCCCCCcccEEEEEcCCCcccCCC
Confidence            678887877743222      334566666                         5677999999999999999999999


Q ss_pred             CcEEEEEEcCHHHHHHHhcCccccCCCCCCcchhhhhccccchhhcccCCCCCCccEEEeeeeecC
Q 020718          257 SLVVGRVLEGMEVAEKIGEVKTVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNCGLME  322 (322)
Q Consensus       257 ~~VFGrVi~Gmdvl~~I~~~~t~~~~~~~~~~~~~~~~gd~~~~~a~~~~~~P~~~V~I~~cG~l~  322 (322)
                      |+|||||++|||||++|+++++..                          ++|.++|+|.+||+|.
T Consensus       126 ~~vFG~Vv~G~dvv~~I~~~~~~~--------------------------~~P~~~v~I~~~g~l~  165 (165)
T 2z6w_A          126 HVVFGHVIEGMDVVKKIESFGSKS--------------------------GRTSKKIVITDCGQLS  165 (165)
T ss_dssp             SCEEEEEEECHHHHHHHHHTCCTT--------------------------SCCSSCEEEEEEEECC
T ss_pred             eeEEEEEEcCHHHHHHHHhCCCCC--------------------------CCCCCcEEEEEeEEEC
Confidence            999999999999999999998643                          7999999999999984

>1mzw_A Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyclophilin, peptidyl-prolyl-CIS/trans isomerase, spliceosome, U4/U6-60K protein, WD protein; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1qoi_A

Probab=100.00  E-value=1.2e-47  Score=338.01  Aligned_cols=163  Identities=28%  Similarity=0.525  Sum_probs=143.4

Q ss_pred             CCceEEEEEEeCCeeeeeEEEEecCCCCChhHHHHHHHhcCCCc-----ccccCcEEEEeccCeeEeeCccccCcccccc
Q 020718           97 PTKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAG-----ISYRRKEFIKIMPNYVQHGGVRSYGVDAELA  171 (322)
Q Consensus        97 ~~~~v~~di~i~g~~~GrIvIeL~~d~aP~tv~nF~~L~~~~~g-----~~Y~g~~f~Rvi~gfviQgGd~~~~~~~~~~  171 (322)
                      .+++||||++|++++.|+|+||||++.||+||+||++||+++++     ++|+|+.||||+++|||||||+..+      
T Consensus         9 ~~~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~~g~~~~Y~g~~FhRvi~~f~iQgGd~~~~------   82 (177)
T 1mzw_A            9 VNPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGSTFHRVIKDFMIQGGDFVNG------   82 (177)
T ss_dssp             CCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTCCEETTEECSSTTCBCCEEETTTEEEECCTTTS------
T ss_pred             CCCEEEEEEEECCeeceeEEEEEcCCCCcHHHHHHHHHHhcccCCcCccceECCCEEEEEECCCEEEcCCcccC------
Confidence            47899999999999999999999999999999999999999842     2399999999999999999998654      


Q ss_pred             cCCCC-CCccccchhhhccCCCCCCCCCCCCCceeeeecCCCCCCcchhhhhccCcceeeccccCCCCCcceEEEEcCCC
Q 020718          172 RRSGS-NLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDS  250 (322)
Q Consensus       172 ~g~gg-~~~~~~~~~E~~~~~~~~~g~~~~~G~v~m~v~~~~~~~~~~~l~ar~G~l~m~~an~~p~s~gSqFfItl~~~  250 (322)
                      +++|+ ++|++.|++|....      .|+.+|+|+|                         +|.+||+|+|||||++++.
T Consensus        83 ~G~gg~si~g~~f~dE~~~l------~h~~~G~lsm-------------------------An~gp~tngSQFfIt~~~~  131 (177)
T 1mzw_A           83 DGTGVASIYRGPFADENFKL------RHSAPGLLSM-------------------------ANSGPSTNGCQFFITCSKC  131 (177)
T ss_dssp             SSCCCCCTTSSCBCCCCCCS------CCCSTTEEEE-------------------------CCSSTTCBCSCEEEESSCC
T ss_pred             CCCCCCccCCCcccCccccc------ccCCCCEEEE-------------------------ccCCCCCcceEEEEECCCC
Confidence            56666 77888887775322      2445666666                         5678999999999999999


Q ss_pred             CCCCCCCcEEEEEEcCHHHHHHHhcCccccCCCCCCcchhhhhccccchhhcccCCCCCCccEEEeeeeec
Q 020718          251 PELDASSLVVGRVLEGMEVAEKIGEVKTVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNCGLM  321 (322)
Q Consensus       251 p~LDg~~~VFGrVi~Gmdvl~~I~~~~t~~~~~~~~~~~~~~~~gd~~~~~a~~~~~~P~~~V~I~~cG~l  321 (322)
                      ++||++|+|||||++|||||++|++++++.+                         ++|.++|+|.+||+|
T Consensus       132 ~~LDg~~~VFG~Vv~G~dvv~~I~~~~t~~~-------------------------~~P~~~v~I~~cG~l  177 (177)
T 1mzw_A          132 DWLDGKHVVFGKIIDGLLVMRKIENVPTGPN-------------------------NKPKLPVVISQCGEM  177 (177)
T ss_dssp             GGGTTTSCEEEEEEECHHHHHHHHTSCBCGG-------------------------GCBSSCEEEEEEEEC
T ss_pred             CccCCCeeEEEEEeCCHHHHHHHHhCCcCCC-------------------------CCCCCCEEEEeceeC
Confidence            9999999999999999999999999999775                         899999999999997

>2he9_A NK-tumor recognition protein; cyclosporin, isomerase, membrane, repeat, rotamase, peptidylprolyl isomerase, structural genomics; 2.00A {Homo sapiens}

Probab=100.00  E-value=2.7e-47  Score=339.43  Aligned_cols=165  Identities=32%  Similarity=0.564  Sum_probs=143.7

Q ss_pred             CCCceEEEEEEeCCeeeeeEEEEecCCCCChhHHHHHHHhcCCCc--------ccccCcEEEEeccCeeEeeCccccCcc
Q 020718           96 DPTKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAG--------ISYRRKEFIKIMPNYVQHGGVRSYGVD  167 (322)
Q Consensus        96 ~~~~~v~~di~i~g~~~GrIvIeL~~d~aP~tv~nF~~L~~~~~g--------~~Y~g~~f~Rvi~gfviQgGd~~~~~~  167 (322)
                      ..+++|||||+|+++++|+|+||||++.||+||+||++||++.++        .+|+|+.||||+++|||||||+..+  
T Consensus        17 ~~~~~vf~di~i~~t~~G~I~ieL~~~~aP~t~~NF~~L~~g~~g~~~~~~k~~~Y~g~~FhRVi~~fmiQgGd~~~~--   94 (192)
T 2he9_A           17 RGSPQCHFDIEINREPVGRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGSTFHRVVKNFMIQGGDFSEG--   94 (192)
T ss_dssp             --CCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBSCCTTCBEEEEETTTEEEECCTTTS--
T ss_pred             cCCCeEEEEEEECCEecceEEEEEcCCCCchHHHHHHHHhcCCCCcccccccCCeECCCEEEEEECCCEEEcCcccCC--
Confidence            457899999999999999999999999999999999999975432        3799999999999999999998754  


Q ss_pred             cccccCCCC-CCccccchhhhccCCCCCCCCCCCCCceeeeecCCCCCCcchhhhhccCcceeeccccCCCCCcceEEEE
Q 020718          168 AELARRSGS-NLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIV  246 (322)
Q Consensus       168 ~~~~~g~gg-~~~~~~~~~E~~~~~~~~~g~~~~~G~v~m~v~~~~~~~~~~~l~ar~G~l~m~~an~~p~s~gSqFfIt  246 (322)
                          +++|+ ++|++.|++|.....      |+.+|+|+|                         +|.++|+|+||||||
T Consensus        95 ----~G~gg~siyg~~f~dE~~~l~------h~~~G~lsM-------------------------An~gp~tngSQFFIt  139 (192)
T 2he9_A           95 ----NGKGGESIYGGYFKDENFILK------HDRAFLLSM-------------------------ANRGKHTNGSQFFIT  139 (192)
T ss_dssp             ----SSSCCCCTTSSCBCCCCCCSC------CCSTTEEEE-------------------------CCSSTTCBCSCEEEE
T ss_pred             ----CCCCCCcccCCcccCccccCC------CCCCeEEEE-------------------------EeCCCCCcceEEEEE
Confidence                56666 788888887754322      445666666                         567899999999999


Q ss_pred             cCCCCCCCCCCcEEEEEEcCHHHHHHHhcCccccCCCCCCcchhhhhccccchhhcccCCCCCCccEEEeeeeecC
Q 020718          247 TKDSPELDASSLVVGRVLEGMEVAEKIGEVKTVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNCGLME  322 (322)
Q Consensus       247 l~~~p~LDg~~~VFGrVi~Gmdvl~~I~~~~t~~~~~~~~~~~~~~~~gd~~~~~a~~~~~~P~~~V~I~~cG~l~  322 (322)
                      +.++++||++|+|||||++|||||++|++++++.+                         ++|.++|+|.+||+|.
T Consensus       140 ~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~-------------------------~~P~~~v~I~~~g~l~  190 (192)
T 2he9_A          140 TKPAPHLDGVHVVFGLVISGFEVIEQIENLKTDAA-------------------------SRPYADVRVIDCGVLA  190 (192)
T ss_dssp             SSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTT-------------------------SCBSSCEEEEEEEECC
T ss_pred             cCCCcccCCCccEEEEEEeCHHHHHHHHcCCcCCC-------------------------CCCcCCeEEEEeEEEc
Confidence            99999999999999999999999999999999876                         7999999999999984

>1qng_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, cyclophilin-cyclosporin complex, immunosuppressant, cyclophilin; HET: BMT; 2.1A {Plasmodium falciparum} SCOP: b.62.1.1 PDB: 1qnh_A*

Probab=100.00  E-value=1.5e-47  Score=335.25  Aligned_cols=160  Identities=29%  Similarity=0.552  Sum_probs=140.2

Q ss_pred             CCceEEEEEEeCCeeeeeEEEEecCCCCChhHHHHHHHhcCCCccc--------ccCcEEEEeccCeeEeeCccccCccc
Q 020718           97 PTKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGIS--------YRRKEFIKIMPNYVQHGGVRSYGVDA  168 (322)
Q Consensus        97 ~~~~v~~di~i~g~~~GrIvIeL~~d~aP~tv~nF~~L~~~~~g~~--------Y~g~~f~Rvi~gfviQgGd~~~~~~~  168 (322)
                      .+++|||||+|++++.|+|+||||++.||+||+||++||++. + +        |+|+.||||+++|||||||+..+   
T Consensus         2 ~~~~v~~di~i~~~~~G~i~ieL~~~~aP~t~~NF~~L~~~~-g-~g~~~~~~~Y~g~~FhRvi~~f~iQgGd~~~~---   76 (170)
T 1qng_A            2 KRSKVFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGE-K-IGSRGKNLHYKNSIFHRIIPQFMCQGGDITNG---   76 (170)
T ss_dssp             CSCEEEEEEEESSSEEEEEEEEECTTTCHHHHHHHHHHHHTC-E-ECTTSSEECCTTCBCCEEETTTEEEECCTTTS---
T ss_pred             CCCEEEEEEeECCEeceeEEEEEcCCCCCHHHHHHHHHhccC-C-cCccCccceECCCEEEEEECCCEEEcCCccCC---
Confidence            367999999999999999999999999999999999999852 2 5        99999999999999999998654   


Q ss_pred             ccccCCCC-CCccccchhhhccCCCCCCCCCCCCCceeeeecCCCCCCcchhhhhccCcceeeccccCCCCCcceEEEEc
Q 020718          169 ELARRSGS-NLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVT  247 (322)
Q Consensus       169 ~~~~g~gg-~~~~~~~~~E~~~~~~~~~g~~~~~G~v~m~v~~~~~~~~~~~l~ar~G~l~m~~an~~p~s~gSqFfItl  247 (322)
                         +++|+ ++|++.|++|....      .|+.+|+|+|                         +|.++|+|+|||||++
T Consensus        77 ---~g~gg~si~g~~f~dE~~~l------~h~~~G~lsm-------------------------An~gp~tngSQFfIt~  122 (170)
T 1qng_A           77 ---NGSGGESIYGRSFTDENFNM------KHDQPGLLSM-------------------------ANAGPNTNSSQFFITL  122 (170)
T ss_dssp             ---SSSCCCBTTBSCBCCCCCCS------CCCSTTEEEE-------------------------CCSSTTCBCSCEEEES
T ss_pred             ---CCCCCccccCCccccccccc------ccCCCCEEEE-------------------------eecCCCCcccEEEEEC
Confidence               56666 77788887775322      2445666666                         5778999999999999


Q ss_pred             CCCCCCCCCCcEEEEEEcCHHHHHHHhcCccccCCCCCCcchhhhhccccchhhcccCCCCCCccEEEeeeeec
Q 020718          248 KDSPELDASSLVVGRVLEGMEVAEKIGEVKTVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNCGLM  321 (322)
Q Consensus       248 ~~~p~LDg~~~VFGrVi~Gmdvl~~I~~~~t~~~~~~~~~~~~~~~~gd~~~~~a~~~~~~P~~~V~I~~cG~l  321 (322)
                      .++++||++|+|||+|++|||||++|+++++. +                         ++|.++|+|.+||+|
T Consensus       123 ~~~~~Ldg~~~vFG~Vv~G~dvv~~I~~~~t~-~-------------------------~~P~~~v~I~~cG~l  170 (170)
T 1qng_A          123 VPCPWLDGKHVVFGKVIEGMNVVREMEKEGAK-S-------------------------GYVKRSVVITDCGEL  170 (170)
T ss_dssp             SCCGGGTTTSCEEEEEEECHHHHHHHHTTCCT-T-------------------------CCCSSCEEEEEEEEC
T ss_pred             CCCcccCCCeeEEEEEECCHHHHHHHHhCCCC-C-------------------------CCCCCCeEEEeceeC
Confidence            99999999999999999999999999999993 3                         799999999999987

>3ich_A Peptidyl-prolyl CIS-trans isomerase B; beta sandwich, cyclosporin, endoplasmic reticulum, glycoprot isomerase, rotamase; 1.20A {Homo sapiens} PDB: 3ici_A* 1cyn_A* 2esl_A* 2rmc_A* 1h0p_A 1xo7_A 1xq7_A*

Probab=100.00  E-value=1.8e-47  Score=339.64  Aligned_cols=166  Identities=31%  Similarity=0.620  Sum_probs=145.0

Q ss_pred             CCCCCceEEEEEEeCCeeeeeEEEEecCCCCChhHHHHHHHhcCCCcccccCcEEEEeccCeeEeeCccccCcccccccC
Q 020718           94 NKDPTKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHGGVRSYGVDAELARR  173 (322)
Q Consensus        94 ~~~~~~~v~~di~i~g~~~GrIvIeL~~d~aP~tv~nF~~L~~~~~g~~Y~g~~f~Rvi~gfviQgGd~~~~~~~~~~~g  173 (322)
                      .+..+++|||||+|+++++|+|+||||++.||+||+||++||++.+|+.|+|+.||||+++|||||||+..+      ++
T Consensus        11 ~p~~~~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~Y~g~~FhRvi~~f~iQgGd~~~~------~g   84 (188)
T 3ich_A           11 GPKVTVKVYFDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFMIQGGDFTRG------DG   84 (188)
T ss_dssp             SCEEEEEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCSSTTCBCCEEETTTEEEECCTTTS------SS
T ss_pred             CCCcCCeEEEEEEECCEeceeEEEEEcCCCCcHHHHHHHHHhcccCCccccCCEEEEEECCCEEEcCCccCC------CC
Confidence            345688999999999999999999999999999999999999865554499999999999999999996543      56


Q ss_pred             CCC-CCccccchhhhccCCCCCCCCCCCCCceeeeecCCCCCCcchhhhhccCcceeeccccCCCCCcceEEEEcCCCCC
Q 020718          174 SGS-NLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPE  252 (322)
Q Consensus       174 ~gg-~~~~~~~~~E~~~~~~~~~g~~~~~G~v~m~v~~~~~~~~~~~l~ar~G~l~m~~an~~p~s~gSqFfItl~~~p~  252 (322)
                      +|+ ++|++.|++|....      .|+.+|+|+|                         +|.++|+|+|||||+++++++
T Consensus        85 ~gg~si~g~~f~dE~~~l------~h~~~G~lsm-------------------------An~gp~tngSQFfIt~~~~~~  133 (188)
T 3ich_A           85 TGGKSIYGERFPDENFKL------KHYGPGWVSM-------------------------ANAGKDTNGSQFFITTVKTAW  133 (188)
T ss_dssp             SCCCBTTBSCBCCCCCCS------CCCSTTEEEE-------------------------CCSSTTCBCSCEEEESSCCGG
T ss_pred             CCCccccCCcccccccCc------ccCCCeEEEE-------------------------ccCCCCCcccEEEEECCCCcc
Confidence            666 77888888774322      2456777776                         567899999999999999999


Q ss_pred             CCCCCcEEEEEEcCHHHHHHHhcCccccCCCCCCcchhhhhccccchhhcccCCCCCCccEEEeeeeec
Q 020718          253 LDASSLVVGRVLEGMEVAEKIGEVKTVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNCGLM  321 (322)
Q Consensus       253 LDg~~~VFGrVi~Gmdvl~~I~~~~t~~~~~~~~~~~~~~~~gd~~~~~a~~~~~~P~~~V~I~~cG~l  321 (322)
                      ||++|+|||||++|||||++|++++++..                         ++|.++|+|.+||+|
T Consensus       134 LDg~~tVFG~Vv~G~dvv~~I~~~~~~~~-------------------------~~P~~~v~I~~~~~l  177 (188)
T 3ich_A          134 LDGKHVVFGKVLEGMEVVRKVESTKTDSR-------------------------DKPLKDVIIADCGKI  177 (188)
T ss_dssp             GTTTSCEEEEEEECHHHHHHHHTSCBCTT-------------------------SCBSSCEEEEEEEEE
T ss_pred             cCCCeeEEEEEeCCHHHHHHHHhCCcCCC-------------------------CeECCCEEEEEeEEE
Confidence            99999999999999999999999999875                         799999999999997

>3k2c_A Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH, niaid, SBRI, UW, decode, cytoplasm, rotamase, structural genomics; HET: PG5; 1.95A {Encephalitozoon cuniculi}

Probab=100.00  E-value=9.6e-47  Score=336.27  Aligned_cols=164  Identities=26%  Similarity=0.494  Sum_probs=143.7

Q ss_pred             CCCceEEEEEEeCCeeeeeEEEEecCCCCChhHHHHHHHhcCCCcccccCcEEEEeccCeeEeeCccccCcccccccCCC
Q 020718           96 DPTKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHGGVRSYGVDAELARRSG  175 (322)
Q Consensus        96 ~~~~~v~~di~i~g~~~GrIvIeL~~d~aP~tv~nF~~L~~~~~g~~Y~g~~f~Rvi~gfviQgGd~~~~~~~~~~~g~g  175 (322)
                      ..+++|||||+|++++.|+|+||||++.||+||+||++||+++++++|+|+.||||+++|||||||+..+      ++.|
T Consensus        25 ~~~p~v~~di~i~~t~~G~I~ieL~~~~aP~tv~NF~~L~~g~~g~~Y~g~~FhRvi~~f~iQgGd~~~~------~g~g   98 (193)
T 3k2c_A           25 EASGNVYFDVYANEESLGRIVMKLEDDIVPKTAKNFRTLCERPKGEGYKGSTFHRIIPGFMVQGGDYTAH------NGTG   98 (193)
T ss_dssp             -CTTCEEEEEEETTEEEEEEEEEECTTTSHHHHHHHHHHHHSCTTSSSTTCBEEEEETTTEEEECCTTTS------SSSC
T ss_pred             cCCCEEEEEEeECCEEeeEEEEEEcCCCChHHHHHHHHHhccccCCcccCCEEEEEeCCCEEEeCCCCCC------CCcC
Confidence            4578999999999999999999999999999999999999977665699999999999999999997643      5666


Q ss_pred             C-CCccccchhhhccCCCCCCCCCCCCCceeeeecCCCCCCcchhhhhccCcceeeccccCCCCCcceEEEEcCCCCCCC
Q 020718          176 S-NLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELD  254 (322)
Q Consensus       176 g-~~~~~~~~~E~~~~~~~~~g~~~~~G~v~m~v~~~~~~~~~~~l~ar~G~l~m~~an~~p~s~gSqFfItl~~~p~LD  254 (322)
                      + +++++.+++|....      .++.+|+|+|                         +|.++|+++|||||++++.++||
T Consensus        99 g~si~g~~f~dE~~~l------~h~~~G~lsm-------------------------An~gp~t~gSQFFIt~~~~~~LD  147 (193)
T 3k2c_A           99 GRSIYGEKFPDENFEL------KHTKEGILSM-------------------------ANCGAHTNGSQFFITLGKTQWLD  147 (193)
T ss_dssp             CCCTTSSCBCCCCCCS------CCCSTTEEEE-------------------------CCSSTTCBCSCEEEESSCCGGGT
T ss_pred             CcccCCCccccccccc------ccCCCcEEEE-------------------------EeCCCCCCccEEEEECCCCcccC
Confidence            5 67777777764322      2456777776                         56779999999999999999999


Q ss_pred             CCCcEEEEEEcCHHHHHHHhcCccccCCCCCCcchhhhhccccchhhcccCCCCCC--ccEEEeeeeecC
Q 020718          255 ASSLVVGRVLEGMEVAEKIGEVKTVQENTGSPYFRVAKLIGDKRAVVAERGFNRPY--SKVLVTNCGLME  322 (322)
Q Consensus       255 g~~~VFGrVi~Gmdvl~~I~~~~t~~~~~~~~~~~~~~~~gd~~~~~a~~~~~~P~--~~V~I~~cG~l~  322 (322)
                      ++|+|||||++|||||++|++++++.                          ++|.  ++|+|.+||+|+
T Consensus       148 g~~tVFG~Vv~Gmdvv~~I~~~~t~~--------------------------g~P~~~~~v~I~~cG~l~  191 (193)
T 3k2c_A          148 EKHVVFGEVVEGMDVVHKIAKYGSES--------------------------GQVKKGYRIEIRDCGVLG  191 (193)
T ss_dssp             TTSCEEEEEEECHHHHHHHHTTCCTT--------------------------CCCCTTCCEEEEEEEECC
T ss_pred             CCccEEEEEeCCHHHHHHHHhcCCCC--------------------------CcCccCccEEEEEceEeC
Confidence            99999999999999999999999975                          7999  999999999985

>2poy_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, isomerase, S genomics, structural genomics consortium; HET: BMT; 1.80A {Cryptosporidium parvum iowa II} PDB: 2plu_A*

Probab=100.00  E-value=8.2e-47  Score=334.80  Aligned_cols=163  Identities=31%  Similarity=0.544  Sum_probs=139.8

Q ss_pred             CCCCceEEEEEEeCCeeeeeEEEEecCCCCChhHHHHHHHhcCCCcc-------cccCcEEEEeccCeeEeeCccccCcc
Q 020718           95 KDPTKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGI-------SYRRKEFIKIMPNYVQHGGVRSYGVD  167 (322)
Q Consensus        95 ~~~~~~v~~di~i~g~~~GrIvIeL~~d~aP~tv~nF~~L~~~~~g~-------~Y~g~~f~Rvi~gfviQgGd~~~~~~  167 (322)
                      ...+++|||||+|++++.|+|+||||++.||+||+||++||++.+|+       +|+|+.||||+++|||||||+..+  
T Consensus        16 ~~~~~~v~~di~i~~t~~G~I~ieL~~~~aP~t~~NF~~L~~g~~g~~~~~~~~~Y~g~~FhRVi~~f~iQgGd~~~~--   93 (186)
T 2poy_A           16 FQGNPVVYFDISIGQTPAGRITMELFADKVPITAENFRALCTGEKGMGQSGKPLCYTGSFFHRIIPQFMIQGGDFTRG--   93 (186)
T ss_dssp             --CCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTCBCTTSSBSCCTTCBCCEEETTTEEEECCTTTS--
T ss_pred             cCCCCEEEEEEeECCEecccEEEEEeCCCCcHHHHHHHHHhcccCCccccCccceECCCEEEEEeCCCEEEeCCCCCC--
Confidence            34578999999999999999999999999999999999999865443       299999999999999999998754  


Q ss_pred             cccccCCCC-CCccccchhhhccCCCCCCCCCCCCCceeeeecCCCCCCcchhhhhccCcceeeccccCCCCCcceEEEE
Q 020718          168 AELARRSGS-NLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIV  246 (322)
Q Consensus       168 ~~~~~g~gg-~~~~~~~~~E~~~~~~~~~g~~~~~G~v~m~v~~~~~~~~~~~l~ar~G~l~m~~an~~p~s~gSqFfIt  246 (322)
                          +++|+ ++|++.|++|....      .|+.+|+|+|                         +|.+||+|+|||||+
T Consensus        94 ----~G~gg~si~g~~f~dE~~~l------~h~~~G~lsM-------------------------An~gpntngSQFFIt  138 (186)
T 2poy_A           94 ----DGTGGESIYGSKFRDENFVY------THDAPFLLSM-------------------------ANAGPNTNGSQFFIT  138 (186)
T ss_dssp             ----SSSCCCCTTC-CBCCCCCCS------CCCSTTEEEE-------------------------CCSSTTCBCSCEEEE
T ss_pred             ----CCCCCCccCCCcccCccccc------ccCCCcEEEE-------------------------eeCCCCCcccEEEEE
Confidence                56666 77888888775322      2345666666                         567899999999999


Q ss_pred             cCCCCCCCCCCcEEEEEEcCHHHHHHHhcCccccCCCCCCcchhhhhccccchhhcccCCCCCCccEEEeeeee
Q 020718          247 TKDSPELDASSLVVGRVLEGMEVAEKIGEVKTVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNCGL  320 (322)
Q Consensus       247 l~~~p~LDg~~~VFGrVi~Gmdvl~~I~~~~t~~~~~~~~~~~~~~~~gd~~~~~a~~~~~~P~~~V~I~~cG~  320 (322)
                      +.+.++||++|+|||+|++|||||++|+++++..                          ++|.++|+|.+||+
T Consensus       139 ~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~--------------------------~~P~~~v~I~~cG~  186 (186)
T 2poy_A          139 TVPCPWLDGKHVVFGKVLEGMEVVKSIEKCGSQN--------------------------GKPTKSVCITASGV  186 (186)
T ss_dssp             SSCCGGGTTTSCEEEEEEECHHHHHHHHHTCCTT--------------------------SCCSSCEEEEEEEC
T ss_pred             CCCCcccCCCeeEEEEEecCHHHHHHHHhCCCCC--------------------------CCCCCCEEEEeCCC
Confidence            9999999999999999999999999999999843                          79999999999996

>1z81_A Cyclophilin; structural genomics, structural genomics consortium, SGC, isomerase; 2.80A {Plasmodium yoelii yoelii} SCOP: b.62.1.1

Probab=100.00  E-value=8.9e-46  Score=337.19  Aligned_cols=164  Identities=23%  Similarity=0.444  Sum_probs=144.1

Q ss_pred             CCceEEEEEEeCCeeeeeEEEEecCCCCChhHHHHHHHhcCCCc-----ccccCcEEEEeccCeeEeeCccccCcccccc
Q 020718           97 PTKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAG-----ISYRRKEFIKIMPNYVQHGGVRSYGVDAELA  171 (322)
Q Consensus        97 ~~~~v~~di~i~g~~~GrIvIeL~~d~aP~tv~nF~~L~~~~~g-----~~Y~g~~f~Rvi~gfviQgGd~~~~~~~~~~  171 (322)
                      .+++|||||+|++++.|+|+||||++.||+||+||++||+++++     ++|+|+.||||+++|||||||+..+      
T Consensus        58 ~~~~V~~disi~~t~~G~I~ieL~~d~aP~tv~NF~~L~~~~~g~~g~~~~Y~gt~FHRVi~~FmiQgGD~~~g------  131 (229)
T 1z81_A           58 SNPVVFMDINLGNNFLGKFKFELFQNIVPKTSENFRQFCTGEYKVNNLPVGYKNTIFHRVIKEFMIQGGDFINH------  131 (229)
T ss_dssp             TCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTCCBSSSSBCSSTTEECCEEETTTEEEECCTTTS------
T ss_pred             CCcEEEEEEeECCeecccEEEEEcCCCCCHHHHHHHHHhhCCCCCcCCCceECCCEEEEEeCCCEEEcCCCcCC------
Confidence            47899999999999999999999999999999999999998754     3799999999999999999998654      


Q ss_pred             cCCCC-CCccccchhhhccCCCCCCCCCCCCCceeeeecCCCCCCcchhhhhccCcceeeccccCCCCCcceEEEEcCCC
Q 020718          172 RRSGS-NLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDS  250 (322)
Q Consensus       172 ~g~gg-~~~~~~~~~E~~~~~~~~~g~~~~~G~v~m~v~~~~~~~~~~~l~ar~G~l~m~~an~~p~s~gSqFfItl~~~  250 (322)
                      +++|+ ++|++.|++|....      .|+.+|+|+|                         +|.++|+|+||||||+.++
T Consensus       132 ~G~Gg~siyg~~f~dE~~~l------~h~~~G~LsM-------------------------An~gpntngSQFFIt~~~~  180 (229)
T 1z81_A          132 NGSGSLSIYGEKFDDENFDI------KHDKEGLLSM-------------------------ANSGPNTNGCQFFITTKKC  180 (229)
T ss_dssp             SSCCCCBTTBSCCCCCCCCS------CCCSTTEEEE-------------------------CCSSSSCCCSCEEEESSCC
T ss_pred             CCCCCCccCCCccccccccc------ccCCCcEEEe-------------------------ccCCCCCcccEEEEECCCC
Confidence            56766 77888887775322      2446677666                         5677999999999999999


Q ss_pred             CCCCCCCcEEEEEE--cCHHHHHHHhcCccccCCCCCCcchhhhhccccchhhcccCCCCCCccEEEeeeeec
Q 020718          251 PELDASSLVVGRVL--EGMEVAEKIGEVKTVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNCGLM  321 (322)
Q Consensus       251 p~LDg~~~VFGrVi--~Gmdvl~~I~~~~t~~~~~~~~~~~~~~~~gd~~~~~a~~~~~~P~~~V~I~~cG~l  321 (322)
                      ++||++|+|||||+  +|||||++|++++++.+.                        ++|.++|+|.+||+|
T Consensus       181 ~~LDg~~tVFG~Vv~~eGmdVv~~I~~~~t~~~~------------------------~~P~~~V~I~~cG~l  229 (229)
T 1z81_A          181 EWLDGKNVVFGRIIDNDSLLLLKKIENVSVTPYI------------------------YKPKIPINVVECGEL  229 (229)
T ss_dssp             GGGBTTBCEEEEECSHHHHHHHHHHHHSCBCTTT------------------------CCBSSCEEEEEEEEC
T ss_pred             cccCCCeeEEEEEEecCcHHHHHHHHhCCCCCCC------------------------CCCCCCeEEEeCeeC
Confidence            99999999999999  999999999999997632                        699999999999987

>2c3b_A Ppiase, cyclophilin; isomerase, 3D domain swapping, misfolding, Asp F 11, allergen, rotamase; 1.85A {Aspergillus fumigatus} SCOP: b.62.1.1

Probab=100.00  E-value=2.3e-46  Score=328.38  Aligned_cols=163  Identities=27%  Similarity=0.537  Sum_probs=116.6

Q ss_pred             CCceEEEEEEeC--Ceee---eeEEEEecCCCCChhHHHHHHHhcCCCcccccCcEEEEeccCeeEeeCccccCcccccc
Q 020718           97 PTKRVFLDISID--GKSA---GRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHGGVRSYGVDAELA  171 (322)
Q Consensus        97 ~~~~v~~di~i~--g~~~---GrIvIeL~~d~aP~tv~nF~~L~~~~~g~~Y~g~~f~Rvi~gfviQgGd~~~~~~~~~~  171 (322)
                      ++ +|||||+|+  |+..   |+|+||||++.||+||+||++||++.+|+.|+|+.||||+++|||||||+..+      
T Consensus         2 it-~vf~di~i~~~~~~~T~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~Y~g~~fhRvi~~f~iQgGd~~~~------   74 (172)
T 2c3b_A            2 MS-QVFFDVEYAPVGTAETKVGRIVFNLFDKDVPKTAKNFRELCKRPAGEGYRESTFHRIIPNFMIQGGDFTRG------   74 (172)
T ss_dssp             CC-CEEEEEEECCTTCSCCEEEEEEEEECTTTSHHHHHHHHHHHHSCTTTSSTTCBCCEEETTTEEEECC----------
T ss_pred             ce-EEEEEEEeCCCCceecccccEEEEEcCCCCcHHHHHHHHHhccCCCcccCCCEEEEEeCCCEEEeCCcCCC------
Confidence            35 899999999  8766   99999999999999999999999966564599999999999999999995433      


Q ss_pred             cCCCC-CCccccchhhhccCCCCCCCCCCCCCceeeeecCCCCCCcchhhhhccCcceeeccccCCCCCcceEEEEcCCC
Q 020718          172 RRSGS-NLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDS  250 (322)
Q Consensus       172 ~g~gg-~~~~~~~~~E~~~~~~~~~g~~~~~G~v~m~v~~~~~~~~~~~l~ar~G~l~m~~an~~p~s~gSqFfItl~~~  250 (322)
                      +++|+ ++|++.|++|....      .|+.+|+|+|                         +|.++|+|+|||||++.++
T Consensus        75 ~g~gg~si~g~~f~dE~~~~------~h~~~G~lsm-------------------------A~~gp~t~gSQFfIt~~~~  123 (172)
T 2c3b_A           75 NGTGGRSIYGDKFADENFSR------KHDKKGILSM-------------------------ANAGPNTNGSQFFITTAVT  123 (172)
T ss_dssp             ------------------CH------HHHHTCEEEE-------------------------C---------CEEEECSCC
T ss_pred             CCCCCcccCCCcccCccccc------ccCCCeEEEE-------------------------eeCCCCCcccEEEEECCCC
Confidence            56666 67777777763221      1334444444                         5668999999999999999


Q ss_pred             CCCCCCCcEEEEEEc--CHHHHHHHhcCccccCCCCCCcchhhhhccccchhhcccCCCCCCccEEEeeeeec
Q 020718          251 PELDASSLVVGRVLE--GMEVAEKIGEVKTVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNCGLM  321 (322)
Q Consensus       251 p~LDg~~~VFGrVi~--Gmdvl~~I~~~~t~~~~~~~~~~~~~~~~gd~~~~~a~~~~~~P~~~V~I~~cG~l  321 (322)
                      ++||++|+|||||++  |||||++|++++++..+                        ++|.++|+|.+||+|
T Consensus       124 ~~LDg~~tvFG~Vv~~~G~dvv~~I~~~~t~~~~------------------------~~P~~~v~I~~cG~l  172 (172)
T 2c3b_A          124 SWLDGKHVVFGEVADEKSYSVVKEIEALGSSSGS------------------------VRSNTRPKIVNCGEL  172 (172)
T ss_dssp             TTCCSCCEEEEEECSHHHHHHHHHHHTTCCTTSC------------------------CCSSSCCEEEEEEEC
T ss_pred             CccCCCeeEEEEEEecCCHHHHHHHHhCCCCCCC------------------------ccCCCCeEEEeCeeC
Confidence            999999999999999  99999999999997631                        499999999999987

>2ose_A Probable peptidyl-prolyl CIS-trans isomerase; cyclophilin; 2.04A {Mimivirus}

Probab=100.00  E-value=1.3e-44  Score=331.21  Aligned_cols=167  Identities=23%  Similarity=0.396  Sum_probs=138.0

Q ss_pred             CCCceEEEEEEeCCeeeeeEEEEecCCCCChhHHHHHHHhcCC-----------C----c--ccccCcEEEEeccCeeEe
Q 020718           96 DPTKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGT-----------A----G--ISYRRKEFIKIMPNYVQH  158 (322)
Q Consensus        96 ~~~~~v~~di~i~g~~~GrIvIeL~~d~aP~tv~nF~~L~~~~-----------~----g--~~Y~g~~f~Rvi~gfviQ  158 (322)
                      ..+++|||||+|+++..|+|+||||++.||+||+||++||+++           +    |  +.|+|+.||||+++||||
T Consensus        12 ~~~p~v~~di~i~~t~~G~I~ieL~~d~aP~tv~NF~~L~~g~~~~~~p~~~~~~~~~~G~~~~Y~gt~FHRVi~~FmiQ   91 (234)
T 2ose_A           12 GKNPRVYMDIVLNNEIIGRLQIKLFRDAFPAGVENFVQLTNGKTYRVNSNGTGKYKYNRHINRTYEGCKFHNVLHNNYIV   91 (234)
T ss_dssp             CSSCEEEEEEEETTEEEEEEEEEECGGGCHHHHHHHHHHHHTCCCC---------------CCCSTTCBCCEEETTTEEE
T ss_pred             CCCCEEEEEEEECCcccceEEEEEcCCCCcHHHHHHHHHhcCCccccccccccccccccCCceEECCcEEEEEECCCEEE
Confidence            4478999999999999999999999999999999999999965           3    3  459999999999999999


Q ss_pred             eCccccCcccccccCCCC-CCcccc-chhhhccCCCCCCCCCCCCCceeeeecCCCCCCcchhhhhccCcceeeccc---
Q 020718          159 GGVRSYGVDAELARRSGS-NLETER-LMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQGKLEIDQEE---  233 (322)
Q Consensus       159 gGd~~~~~~~~~~~g~gg-~~~~~~-~~~E~~~~~~~~~g~~~~~G~v~m~v~~~~~~~~~~~l~ar~G~l~m~~an---  233 (322)
                      |||+..+      +++|+ ++|++. ++.||. + .  ...|+.+|+|+|                         +|   
T Consensus        92 gGd~~~g------~G~Gg~siyg~~~~p~~f~-~-~--~l~h~~~G~lsM-------------------------An~~~  136 (234)
T 2ose_A           92 SGDIYNS------NGSSAGTVYCDEPIPPVFG-D-Y--FYPHESKGLLSL-------------------------VPYTD  136 (234)
T ss_dssp             ECCCC----------CCCCCTTTTCCBCCCCC-S-C--CCCSCSTTEEEE-------------------------CCEEC
T ss_pred             cCCccCC------CCCCCccccCCccCccccc-C-c--CccCCCCCEEEE-------------------------ecccc
Confidence            9996543      56776 677765 333333 1 1  112335666666                         34   


Q ss_pred             -cCCCCCcceEEEEcCC------CCCCCCCCcEEEEEEcCHHHHHHHhcCccccCCCCCCcchhhhhccccchhhcccCC
Q 020718          234 -VGKDPNGTEFVIVTKD------SPELDASSLVVGRVLEGMEVAEKIGEVKTVQENTGSPYFRVAKLIGDKRAVVAERGF  306 (322)
Q Consensus       234 -~~p~s~gSqFfItl~~------~p~LDg~~~VFGrVi~Gmdvl~~I~~~~t~~~~~~~~~~~~~~~~gd~~~~~a~~~~  306 (322)
                       .++|+||||||||+++      .++||++|+|||+|++|||||++|++++++.+                         
T Consensus       137 ~~gpntngSQFFIt~~~~~~~~g~p~LDg~~tVFG~Vv~GmdVv~~I~~~~t~~~-------------------------  191 (234)
T 2ose_A          137 ESGNRYYDSTFMITLDDIRPSNVLDELDRDQVVIGQVYGGLDVLDKINSMIKPYA-------------------------  191 (234)
T ss_dssp             TTSCEEBCSCEEEESSCCCTTSSGGGSCTTSEEEEEEEECHHHHHHHHHHTCCCT-------------------------
T ss_pred             cCCCCCccceEEEEecCccccCCCcccCCCeeEEEEEeCCHHHHHHHHhCCcCCC-------------------------
Confidence             6799999999999999      89999999999999999999999999999875                         


Q ss_pred             CCCCccEEEeeeeecC
Q 020718          307 NRPYSKVLVTNCGLME  322 (322)
Q Consensus       307 ~~P~~~V~I~~cG~l~  322 (322)
                      ++|.++|+|.+||+|+
T Consensus       192 ~~P~~~V~I~~~~~l~  207 (234)
T 2ose_A          192 GRKYPTFSIGKCGAYL  207 (234)
T ss_dssp             TCCCCCEEEEEEEECC
T ss_pred             CCccCCEEEEEEEEec
Confidence            8999999999999974

>2x7k_A Peptidyl-prolyl CIS-trans isomerase-like 1; isomerase-immunosuppressant complex, immunosuppressant; HET: MLE MVA BMT ABA SAR; 1.15A {Homo sapiens} PDB: 1xwn_A

Probab=100.00  E-value=1.1e-43  Score=309.57  Aligned_cols=154  Identities=25%  Similarity=0.448  Sum_probs=136.1

Q ss_pred             CceEEEEEEeCCeeeeeEEEEecCCCCChhHHHHHHHhcCCCcccccCcEEEEeccCeeEeeCccccCcccccccCCCC-
Q 020718           98 TKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHGGVRSYGVDAELARRSGS-  176 (322)
Q Consensus        98 ~~~v~~di~i~g~~~GrIvIeL~~d~aP~tv~nF~~L~~~~~g~~Y~g~~f~Rvi~gfviQgGd~~~~~~~~~~~g~gg-  176 (322)
                      +..|.|+++     .|+|+||||++.||+||+||++||+.+   ||+|+.||||+++|||||||+..       ++.|+ 
T Consensus        11 ~~~v~l~t~-----~G~i~ieL~~~~aP~t~~NF~~L~~~g---~Y~g~~fhRvi~~f~iQgGd~~~-------~g~gg~   75 (166)
T 2x7k_A           11 PPNVYLETS-----MGIIVLELYWKHAPKTCKNFAELARRG---YYNGTKFHRIIKDFMIQGGDPTG-------TGRGGA   75 (166)
T ss_dssp             CSEEEEEET-----TEEEEEEECTTTCHHHHHHHHHHHHHT---TTTTEECCEEETTTEEEECCTTS-------SSSCCC
T ss_pred             CCEEEEEeC-----CCcEEEEEccCCCCHHHHHHHHHHhcC---CCCCCEEEEEECCCEEEcCCCCC-------CCCCCC
Confidence            468999998     999999999999999999999999998   99999999999999999999863       56665 


Q ss_pred             CCccccchhhhccCCCCCCCC-CCCCCceeeeecCCCCCCcchhhhhccCcceeeccccCCCCCcceEEEEcCCCCCCCC
Q 020718          177 NLETERLMEEWKANNERCPGT-KNLAGTVGIIVRDPSKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDA  255 (322)
Q Consensus       177 ~~~~~~~~~E~~~~~~~~~g~-~~~~G~v~m~v~~~~~~~~~~~l~ar~G~l~m~~an~~p~s~gSqFfItl~~~p~LDg  255 (322)
                      ++|++.|++|+..      .+ |..+|+|+|                         +|.++|+++|||||+++++++||+
T Consensus        76 si~g~~~~dE~~~------~l~h~~~G~lsm-------------------------An~gp~s~gSQFfI~~~~~~~Ldg  124 (166)
T 2x7k_A           76 SIYGKQFEDELHP------DLKFTGAGILAM-------------------------ANAGPDTNGSQFFVTLAPTQWLDG  124 (166)
T ss_dssp             CTTSSCBCCCCCT------TSCCCSTTEEEE-------------------------CBSSTTCBCSCEEEESSCCGGGTT
T ss_pred             ccCCCcccccccc------ccCCCCCeEEEE-------------------------eeCCCCCccceEEEECCCCCccCC
Confidence            7788888887631      12 334677666                         577899999999999999999999


Q ss_pred             CCcEEEEEEcCHHHHHHHhcCccccCCCCCCcchhhhhccccchhhcccCCCCCCccEEEeeeeecC
Q 020718          256 SSLVVGRVLEGMEVAEKIGEVKTVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNCGLME  322 (322)
Q Consensus       256 ~~~VFGrVi~Gmdvl~~I~~~~t~~~~~~~~~~~~~~~~gd~~~~~a~~~~~~P~~~V~I~~cG~l~  322 (322)
                      +|+|||||++|||||++|++++++.+                         ++|.++|+|.+|.++.
T Consensus       125 ~~tvFG~Vv~G~dvv~~I~~~~t~~~-------------------------~~P~~~i~I~~~~i~~  166 (166)
T 2x7k_A          125 KHTIFGRVCQGIGMVNRVGMVETNSQ-------------------------DRPVDDVKIIKAYPSG  166 (166)
T ss_dssp             TSCEEEEEEECHHHHHHHTTSCBCTT-------------------------SCBSSCCEEEEEEECC
T ss_pred             CeeEEEEEEcCHHHHHHHHcCCcCCC-------------------------CCcCCCeEEEEEEEeC
Confidence            99999999999999999999999875                         7999999999999874

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=100.00  E-value=3.5e-43  Score=339.64  Aligned_cols=161  Identities=29%  Similarity=0.593  Sum_probs=143.7

Q ss_pred             CceEEEEEEeCCeeeeeEEEEecCCCCChhHHHHHHHhcCCCc--------ccccCcEEEEeccCeeEeeCccccCcccc
Q 020718           98 TKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAG--------ISYRRKEFIKIMPNYVQHGGVRSYGVDAE  169 (322)
Q Consensus        98 ~~~v~~di~i~g~~~GrIvIeL~~d~aP~tv~nF~~L~~~~~g--------~~Y~g~~f~Rvi~gfviQgGd~~~~~~~~  169 (322)
                      +++|||||+|++++.|+|+||||++.||+||+||++||++.+|        .+|+|+.||||++||||||||++.+    
T Consensus        15 ~~~v~~~~~~~~~~~G~i~~~l~~~~~P~t~~nf~~l~~~~~~~~~~~g~~~~y~~~~fhrv~~~f~~q~Gd~~~~----   90 (370)
T 1ihg_A           15 NPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRIIKKFMIQGGDFSNQ----   90 (370)
T ss_dssp             SCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTSSBSCCTTCBEEEEETTTEEEECCTTTS----
T ss_pred             CCeEEEEEEECCEecccEEEEEcCCCCchHHHHHHHHcCCCcCcCccCCCcceeCCcEeEEEECCcEEECCCCCCC----
Confidence            7899999999999999999999999999999999999998432        3799999999999999999999754    


Q ss_pred             cccCCCC-CCccccchhhhccCCCCCCCCCCCCCceeeeecCCCCCCcchhhhhccCcceeeccccCCCCCcceEEEEcC
Q 020718          170 LARRSGS-NLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTK  248 (322)
Q Consensus       170 ~~~g~gg-~~~~~~~~~E~~~~~~~~~g~~~~~G~v~m~v~~~~~~~~~~~l~ar~G~l~m~~an~~p~s~gSqFfItl~  248 (322)
                        +|+|+ +++|+.|.+|....      .|+.+|+|+|                         +|.+||+||||||||++
T Consensus        91 --~g~g~~~~~~~~~~~e~~~~------~~~~~g~l~m-------------------------a~~~~~~~~sqffi~~~  137 (370)
T 1ihg_A           91 --NGTGGESIYGEKFEDENFHY------KHDKEGLLSM-------------------------ANAGSNTNGSQFFITTV  137 (370)
T ss_dssp             --SSSCCCBTTBSCBCCCCCCB------CCCSTTEEEE-------------------------CCSSTTCBCSCEEEESS
T ss_pred             --CCCCCCCCCCCCcCCCcCCc------CCCCCeEEEE-------------------------eeCCCCCCCceEEEeCC
Confidence              67777 78888888875432      2556777777                         56789999999999999


Q ss_pred             CCCCCCCCCcEEEEEEcCHHHHHHHhcCccccCCCCCCcchhhhhccccchhhcccCCCCCCccEEEeeeeec
Q 020718          249 DSPELDASSLVVGRVLEGMEVAEKIGEVKTVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNCGLM  321 (322)
Q Consensus       249 ~~p~LDg~~~VFGrVi~Gmdvl~~I~~~~t~~~~~~~~~~~~~~~~gd~~~~~a~~~~~~P~~~V~I~~cG~l  321 (322)
                      +.++||++|+|||+|++||+||++|++++++.                          ++|.++|+|.+||++
T Consensus       138 ~~~~ld~~~~vfG~v~~g~~v~~~i~~~~~~~--------------------------~~P~~~v~I~~~g~l  184 (370)
T 1ihg_A          138 PTPHLDGKHVVFGQVIKGMGVAKILENVEVKG--------------------------EKPAKLCVIAECGEL  184 (370)
T ss_dssp             CCGGGTTTSCEEEEEEECHHHHHHHHTSCEET--------------------------TEESSCEEEEEEEEE
T ss_pred             CCcccCCCceEEEEEecCHHHHHHHHcCCCCC--------------------------CccceeEEEEEEEEe
Confidence            99999999999999999999999999998865                          699999999999987

>2poe_A Cyclophilin-like protein, putative; cryptosporidium parvum cyclophilin isomerase, structural genomics; 2.01A {Cryptosporidium parvum iowa II} PDB: 2qer_A

Probab=100.00  E-value=3e-43  Score=311.76  Aligned_cols=155  Identities=16%  Similarity=0.361  Sum_probs=134.2

Q ss_pred             CceEEEEEEeCCeeeeeEEEEecCCCCChhHHHHHHHhcCCCcccccCcEEEEeccCeeEeeCccccCcccccccCCCC-
Q 020718           98 TKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHGGVRSYGVDAELARRSGS-  176 (322)
Q Consensus        98 ~~~v~~di~i~g~~~GrIvIeL~~d~aP~tv~nF~~L~~~~~g~~Y~g~~f~Rvi~gfviQgGd~~~~~~~~~~~g~gg-  176 (322)
                      ...|.|+++     .|+|+||||++.||+||+||++||+++   ||+|+.||||+++|||||||+..       +++|+ 
T Consensus        16 ~~~v~i~t~-----~G~i~ieL~~~~aP~t~~NF~~L~~~g---~Y~g~~FhRvi~~f~iQgGd~~~-------~g~gg~   80 (185)
T 2poe_A           16 FQGVRIITN-----YGDLKFELFCSQCPKACKNFLALSASG---YYKNTIFHKNIKGFIIQGGDPTG-------TGKGGE   80 (185)
T ss_dssp             CCEEEEEET-----TEEEEEEECTTTCHHHHHHHHHHHHTT---TTTTEEEEEECTTSEEEEEETTS-------SSSCCC
T ss_pred             ceEEEEEec-----CccEEEEEeCCCCcHHHHHHHHHhccC---CCCCCEEEEEECCCEEEcCCCCC-------CCCCCC
Confidence            456666655     999999999999999999999999999   99999999999999999999862       56665 


Q ss_pred             CCccccchhhhccCCCCCCCCCCCCCceeeeecCCCCCCcchhhhhccCcceeeccccC----CCCCcceEEEEcCCCCC
Q 020718          177 NLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQGKLEIDQEEVG----KDPNGTEFVIVTKDSPE  252 (322)
Q Consensus       177 ~~~~~~~~~E~~~~~~~~~g~~~~~G~v~m~v~~~~~~~~~~~l~ar~G~l~m~~an~~----p~s~gSqFfItl~~~p~  252 (322)
                      ++|++.|++|+...     ..|+.+|+|+|                         +|.+    +|++||||||+++++++
T Consensus        81 si~g~~~~dE~~~~-----l~h~~~G~lsm-------------------------A~~g~~~~p~s~gSQFFIt~~~~~~  130 (185)
T 2poe_A           81 SIYGRYFDDEIYPE-----LKYDRRGILSM-------------------------ASKGASKKPNTNGSQFFITYSSLPQ  130 (185)
T ss_dssp             BTTBSCBCCCCCTT-----SCCCSTTEEEE-------------------------CCSCC-CCCSCBCSCEEEESSCCGG
T ss_pred             ccCCCcccccccCC-----CccCCCeEEEE-------------------------ecCCCCCCCCCccceEEEECCCCCc
Confidence            67888888876311     11446777777                         3455    99999999999999999


Q ss_pred             CCCCCcEEEEEEcCHHHHHHHhcCccccCCCCCCcchhhhhccccchhhcccCCCCCCccEEEeeeeecC
Q 020718          253 LDASSLVVGRVLEGMEVAEKIGEVKTVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNCGLME  322 (322)
Q Consensus       253 LDg~~~VFGrVi~Gmdvl~~I~~~~t~~~~~~~~~~~~~~~~gd~~~~~a~~~~~~P~~~V~I~~cG~l~  322 (322)
                      ||++|+|||||++|||||++|++++++.+                         ++|.++|+|.+|++++
T Consensus       131 LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~-------------------------~~P~~~v~I~~~~i~~  175 (185)
T 2poe_A          131 LNGEYVIFGKLIDGFETLNTLENCPSDKS-------------------------HKPIDEIIIKDIVIHS  175 (185)
T ss_dssp             GTTTSCEEEEEEECHHHHHHHHHSCBCTT-------------------------SCBSSCCEEEEEEEEC
T ss_pred             cCCCeeEEEEEeCCHHHHHHHHhCCcCCC-------------------------CCcCCCeEEEEEEEEC
Confidence            99999999999999999999999999875                         7999999999999974

>2fu0_A Cyclophilin, putative; PFE0505W, cyclosporin-binding domain, structura genomics, structural genomics consortium, SGC, unknown FUNC; 1.80A {Plasmodium falciparum} SCOP: b.62.1.1

Probab=100.00  E-value=2.5e-43  Score=305.76  Aligned_cols=155  Identities=21%  Similarity=0.334  Sum_probs=134.2

Q ss_pred             CceEEEEEEeCCeeeeeEEEEecCCCCChhHHHHHHHhcCCCcccccCcEEEEeccCeeEeeCccccCcccccccCCCC-
Q 020718           98 TKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHGGVRSYGVDAELARRSGS-  176 (322)
Q Consensus        98 ~~~v~~di~i~g~~~GrIvIeL~~d~aP~tv~nF~~L~~~~~g~~Y~g~~f~Rvi~gfviQgGd~~~~~~~~~~~g~gg-  176 (322)
                      ...|.|+++     .|+|+||||++.||+||+||++||+.+   ||+|+.||||+++|||||||+..       +++|+ 
T Consensus         5 ~~~v~~~T~-----~G~i~ieL~~~~aP~t~~NF~~L~~~g---~Y~g~~fhRvi~~f~iQgGd~~~-------~g~gg~   69 (160)
T 2fu0_A            5 PKSAIIYTT-----MGDIHISLFYKECKKTVQNFSVHSING---YYNNCIFHRVIKHFMVQTGDPSG-------DGTGGE   69 (160)
T ss_dssp             CCEEEEEET-----TEEEEEEECTTTCHHHHHHHHHHHHTT---TTTTCBCCEEETTTEEEECCTTS-------SSSCCC
T ss_pred             CCEEEEEec-----CccEEEEEeCCCChHHHHHHHHHhccC---ccCCCEEEEEECCCEEEeCCcCC-------CCCCCC
Confidence            456788877     999999999999999999999999999   99999999999999999999852       46666 


Q ss_pred             CCccccchhhhccCCCCCCCCCCCCCceeeeecCCCCCCcchhhhhccCcceeeccccCCCCCcceEEEEcCCCCCCCCC
Q 020718          177 NLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDAS  256 (322)
Q Consensus       177 ~~~~~~~~~E~~~~~~~~~g~~~~~G~v~m~v~~~~~~~~~~~l~ar~G~l~m~~an~~p~s~gSqFfItl~~~p~LDg~  256 (322)
                      ++|++.|++|+....     .|+.+|+|+|                         +|.++|+++|||||++.++++||++
T Consensus        70 si~g~~~~dE~~~~l-----~h~~~G~lsm-------------------------A~~gp~s~~SQFfI~~~~~~~Ldg~  119 (160)
T 2fu0_A           70 SIWGNEFEDEFFDHL-----NHSKPFMVSM-------------------------ANCGPNTNGSQFFITTVPCPWLDFK  119 (160)
T ss_dssp             CTTSSCBCCCCBTTB-----CSSSSSEEEE-------------------------CCSSTTCBCSCEEEESSCCGGGTTT
T ss_pred             cccCCCccccccCCc-----ccCCceEEEE-------------------------ecCCCCCcccEEEEECCCCCccCCC
Confidence            677888888764211     1334566666                         5667999999999999999999999


Q ss_pred             CcEEEEEEcCHHHHHHHhcCccccCCCCCCcchhhhhccccchhhcccCCCCCCccEEEeeeeecC
Q 020718          257 SLVVGRVLEGMEVAEKIGEVKTVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNCGLME  322 (322)
Q Consensus       257 ~~VFGrVi~Gmdvl~~I~~~~t~~~~~~~~~~~~~~~~gd~~~~~a~~~~~~P~~~V~I~~cG~l~  322 (322)
                      |+|||||++|||||++|++++++.+                         ++|.++|+|.+|.+++
T Consensus       120 ~tvFG~Vv~G~dvv~~I~~~~t~~~-------------------------~~P~~~v~I~~~~v~~  160 (160)
T 2fu0_A          120 HTVFGKVTQGSKIVLDIEKVRTDKR-------------------------DKPLEDIKILNIKINN  160 (160)
T ss_dssp             SCEEEEEEECHHHHHHHHTSCBCTT-------------------------SCBSSCCBEEEEEEC-
T ss_pred             cEEEEEEEcCHHHHHHHHhCCcCCC-------------------------CCcCCCeEEEEEEEeC
Confidence            9999999999999999999999865                         8999999999999864

>2b71_A Cyclophilin-like protein; structural genomics, structural genomics consortium, SGC, isomerase; 2.50A {Plasmodium yoelii} SCOP: b.62.1.1

Probab=100.00  E-value=3.1e-43  Score=314.00  Aligned_cols=155  Identities=22%  Similarity=0.345  Sum_probs=135.2

Q ss_pred             CceEEEEEEeCCeeeeeEEEEecCCCCChhHHHHHHHhcCCCcccccCcEEEEeccCeeEeeCccccCcccccccCCCC-
Q 020718           98 TKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHGGVRSYGVDAELARRSGS-  176 (322)
Q Consensus        98 ~~~v~~di~i~g~~~GrIvIeL~~d~aP~tv~nF~~L~~~~~g~~Y~g~~f~Rvi~gfviQgGd~~~~~~~~~~~g~gg-  176 (322)
                      +..|+|+++     .|+|+||||++.||+||+||++||+.+   +|+|+.||||+++|||||||+..       ++.|+ 
T Consensus        38 ~~~V~l~T~-----~G~I~ieL~~~~aP~tv~NF~~L~~~g---~Y~g~~FhRVi~~f~iQgGd~~~-------~g~gg~  102 (196)
T 2b71_A           38 RGYITIYTN-----LGDFEVELYWYHSPKTCLNFYTLCEMG---FYDNTIFHRVIPNFVIQGGDPTG-------TGKGGK  102 (196)
T ss_dssp             SCEEEEEET-----TEEEEEEECTTTSHHHHHHHHHHHHTT---TTTTEEEEEEETTTEEEEEETTS-------SSSCCC
T ss_pred             CcEEEEEeC-----CCCEEEEEeCCCCcHHHHHHHHHhhcC---CcCCCEEEEEeCCcEEEcCCCCC-------CCCCCC
Confidence            467999988     999999999999999999999999999   99999999999999999999863       56666 


Q ss_pred             CCccccchhhhccCCCCCCCCCCCCCceeeeecCCCCCCcchhhhhccCcceeeccccCCCCCcceEEEEcCCCCCCCCC
Q 020718          177 NLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDAS  256 (322)
Q Consensus       177 ~~~~~~~~~E~~~~~~~~~g~~~~~G~v~m~v~~~~~~~~~~~l~ar~G~l~m~~an~~p~s~gSqFfItl~~~p~LDg~  256 (322)
                      ++++..|++|+...     ..|+.+|+|+|                         +|.++|++||||||+++++++||++
T Consensus       103 si~g~~~~dE~~~~-----l~h~~~G~lsM-------------------------An~gpns~gSQFFIt~~~~~~LDg~  152 (196)
T 2b71_A          103 SIYGEYFEDEINKE-----LKHTGAGILSM-------------------------SNNGPNTNSSQFFITLAPLPHLDGK  152 (196)
T ss_dssp             BTTBSCBCCCCCTT-----CCCCSTTEEEE-------------------------CCSSTTCBSSCEEEESSCCGGGTTT
T ss_pred             ccCCCcccccccCC-----cCcCCCeEEEE-------------------------ccCCCCCcccEEEEECCCCCccCCC
Confidence            67788888775321     12446777776                         5678999999999999999999999


Q ss_pred             CcEEEEEEcCHHHHHHHhcCccccCCCCCCcchhhhhccccchhhcccCCCCCCccEEEeeeeecC
Q 020718          257 SLVVGRVLEGMEVAEKIGEVKTVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNCGLME  322 (322)
Q Consensus       257 ~~VFGrVi~Gmdvl~~I~~~~t~~~~~~~~~~~~~~~~gd~~~~~a~~~~~~P~~~V~I~~cG~l~  322 (322)
                      |+|||||++|||||++|++++++.+                         ++|.++|+|.+|+++.
T Consensus       153 ~tVFG~Vv~Gmdvv~~I~~~~t~~~-------------------------~~P~~~i~I~~~~i~~  193 (196)
T 2b71_A          153 HTIFARVSKNMTCIENIASVQTTAT-------------------------NKPIFDLKILRTSTAV  193 (196)
T ss_dssp             SCEEEEEEECHHHHHHHHTSCBCTT-------------------------CCBSSCCEEEEEEC--
T ss_pred             EeEEEEEecCHHHHHHHHhCCcCCC-------------------------CCCCCCeEEEEEEEec
Confidence            9999999999999999999999875                         8999999999999873

>2k7n_A Peptidyl-prolyl CIS-trans isomerase-like 1; beta barrel, disorder-order transition, HOOK-like, mRNA processing, mRNA splicing, rotamase; NMR {Homo sapiens}

Probab=100.00  E-value=4.7e-43  Score=314.15  Aligned_cols=154  Identities=25%  Similarity=0.448  Sum_probs=136.0

Q ss_pred             CceEEEEEEeCCeeeeeEEEEecCCCCChhHHHHHHHhcCCCcccccCcEEEEeccCeeEeeCccccCcccccccCCCC-
Q 020718           98 TKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHGGVRSYGVDAELARRSGS-  176 (322)
Q Consensus        98 ~~~v~~di~i~g~~~GrIvIeL~~d~aP~tv~nF~~L~~~~~g~~Y~g~~f~Rvi~gfviQgGd~~~~~~~~~~~g~gg-  176 (322)
                      +..|+|+++     +|+|+||||++.||+||+||++||+.+   ||+|+.||||+++|||||||+..       ++.|+ 
T Consensus        11 ~~~V~l~T~-----~G~I~ieL~~d~aP~tv~NF~~L~~~g---~Ydg~~FhRVi~~F~iQgGd~~~-------~g~gg~   75 (203)
T 2k7n_A           11 PPNVYLETS-----MGIIVLELYWKHAPKTCKNFAELARRG---YYNGTKFHRIIKDFMIQGGDPTG-------TGRGGA   75 (203)
T ss_dssp             CSEEEEEES-----SCEEEEEECTTTCTTHHHHHHHHHHHT---CGGGCEEEEEETTTEEEEECSSS-------SSSCCC
T ss_pred             CCEEEEEeC-----CCcEEEEEccCCCcHHHHHHHHHHhcC---ccCCCEEEEEeCCcEEEcCCCCC-------CCCCCC
Confidence            478999998     999999999999999999999999998   99999999999999999999863       45555 


Q ss_pred             CCccccchhhhccCCCCCCCC-CCCCCceeeeecCCCCCCcchhhhhccCcceeeccccCCCCCcceEEEEcCCCCCCCC
Q 020718          177 NLETERLMEEWKANNERCPGT-KNLAGTVGIIVRDPSKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDA  255 (322)
Q Consensus       177 ~~~~~~~~~E~~~~~~~~~g~-~~~~G~v~m~v~~~~~~~~~~~l~ar~G~l~m~~an~~p~s~gSqFfItl~~~p~LDg  255 (322)
                      ++|++.|++|+..      .+ |+.+|+|+|                         +|.++|+|+|||||++.++++||+
T Consensus        76 si~g~~f~dE~~~------~l~h~~~G~lsM-------------------------An~gpnsngSQFFIt~~~~~~LDg  124 (203)
T 2k7n_A           76 SIYGKQFEDELHP------DLKFTGAGILAM-------------------------ANAGPDTNGSQFFVTLAPTQWLDG  124 (203)
T ss_dssp             TTSCSCBCCCCCC------SSCCCSSCEEEE-------------------------EESSTTCEEEEEEEESSCCCSSTT
T ss_pred             ccCCCcccccccc------cccCCCCeEEEE-------------------------eeCCCCCcccEEEEEcCCCCccCC
Confidence            6788888887631      12 334666666                         567899999999999999999999


Q ss_pred             CCcEEEEEEcCHHHHHHHhcCccccCCCCCCcchhhhhccccchhhcccCCCCCCccEEEeeeeecC
Q 020718          256 SSLVVGRVLEGMEVAEKIGEVKTVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNCGLME  322 (322)
Q Consensus       256 ~~~VFGrVi~Gmdvl~~I~~~~t~~~~~~~~~~~~~~~~gd~~~~~a~~~~~~P~~~V~I~~cG~l~  322 (322)
                      +|+|||||++|||||++|++++++.+                         ++|.++|+|.+|++++
T Consensus       125 ~~tVFG~VveGmdvv~kI~~~~t~~~-------------------------~~P~~~V~I~~~~v~~  166 (203)
T 2k7n_A          125 KHTIFGRVCQGIGMVNRVGMVETNSQ-------------------------DRPVDDVKIIKAYPSG  166 (203)
T ss_dssp             TSCEEEEEESCHHHHHHHHSCCEEET-------------------------TEECCCCBEEEEEECC
T ss_pred             CeeEEEEEEcCHHHHHHHHcCCcCCC-------------------------CCcCCCeEEEEEEEEe
Confidence            99999999999999999999999876                         7999999999999975

>1zkc_A Peptidyl-prolyl CIS-trans isomerase like 2; CIS-trans isomerization, peptidylprolyl isomerase, protein- folding, structural genomics consortium; 1.65A {Homo sapiens} SCOP: b.62.1.1

Probab=100.00  E-value=6e-43  Score=312.27  Aligned_cols=160  Identities=20%  Similarity=0.344  Sum_probs=137.3

Q ss_pred             CCCCCceEEEEEEeCCeeeeeEEEEecCCCCChhHHHHHHHhcCCCcccccCcEEEEeccCeeEeeCccccCcccccccC
Q 020718           94 NKDPTKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHGGVRSYGVDAELARR  173 (322)
Q Consensus        94 ~~~~~~~v~~di~i~g~~~GrIvIeL~~d~aP~tv~nF~~L~~~~~g~~Y~g~~f~Rvi~gfviQgGd~~~~~~~~~~~g  173 (322)
                      .+.....|.|+++     .|+|+||||++.||+||+||++||+.+   ||+|+.||||+++|||||||+..       ++
T Consensus        15 ~~~~~~~v~l~T~-----~G~I~ieL~~~~aP~tv~NF~~L~~~g---~Ydg~~FhRVi~~f~iQgGd~~~-------~g   79 (197)
T 1zkc_A           15 VPRGSGYVRLHTN-----KGDLNLELHCDLTPKTCENFIRLCKKH---YYDGTIFHRSIRNFVIQGGDPTG-------TG   79 (197)
T ss_dssp             CCCSCEEEEEEET-----TEEEEEEECTTTSHHHHHHHHHHHHTT---TTTTEEEEEEETTTEEEECCTTS-------SS
T ss_pred             CCCCCcEEEEEeC-----CccEEEEEcCCCCcHHHHHHHHHHhcC---CCCCCEEEEEeCCCEEEcCCCCC-------CC
Confidence            3444667777777     999999999999999999999999999   99999999999999999999862       56


Q ss_pred             CCC-CCccccchhhhccCCCCCCCCCCCCCceeeeecCCCCCCcchhhhhccCcceeeccccCCCCCcceEEEEcCCCCC
Q 020718          174 SGS-NLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPE  252 (322)
Q Consensus       174 ~gg-~~~~~~~~~E~~~~~~~~~g~~~~~G~v~m~v~~~~~~~~~~~l~ar~G~l~m~~an~~p~s~gSqFfItl~~~p~  252 (322)
                      +|+ ++|++.|++|+...     ..|+.+|+|+|                         +|.++|+|+|||||+++++++
T Consensus        80 ~Gg~si~g~~f~dE~~~~-----l~h~~~G~lsM-------------------------An~gp~sngSQFFIt~~~~~~  129 (197)
T 1zkc_A           80 TGGESYWGKPFKDEFRPN-----LSHTGRGILSM-------------------------ANSGPNSNRSQFFITFRSCAY  129 (197)
T ss_dssp             SCCCBTTBSCBCCCCCTT-----CCSCSTTEEEE-------------------------CCSSTTCBCSCEEEESSCCGG
T ss_pred             CCCCccCCCccccccCcC-----cCCCCceEEEE-------------------------ecCCCCCcccEEEEEcCCCCc
Confidence            666 67888888875211     12446777776                         567899999999999999999


Q ss_pred             CCCCCcEEEEEEcCHHHHHHHhcCccccCCCCCCcchhhhhccccchhhcccCCCCCCccEEEeeeeecC
Q 020718          253 LDASSLVVGRVLEGMEVAEKIGEVKTVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNCGLME  322 (322)
Q Consensus       253 LDg~~~VFGrVi~Gmdvl~~I~~~~t~~~~~~~~~~~~~~~~gd~~~~~a~~~~~~P~~~V~I~~cG~l~  322 (322)
                      ||++|+|||+|++|||||++|++++++.+.                        ++|.++|+|.+|++++
T Consensus       130 LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~------------------------~~P~~~i~I~~~~v~~  175 (197)
T 1zkc_A          130 LDKKHTIFGRVVGGFDVLTAMENVESDPKT------------------------DRPKEEIRIDATTVFV  175 (197)
T ss_dssp             GTTTSCEEEEEEECHHHHHHHHHSCBCTTT------------------------CCBSSCCEEEEEEEEE
T ss_pred             cCCCccEEEEEEcCHHHHHHHHcCCCCCCC------------------------CCcCCCeEEEEEEEEc
Confidence            999999999999999999999999997631                        6999999999999973

>2ok3_A Peptidyl-prolyl CIS-trans isomerase-like 3; beta-barrel, helix, disulfide bridge; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1xyh_A 2oju_A*

Probab=100.00  E-value=3.8e-43  Score=304.90  Aligned_cols=153  Identities=21%  Similarity=0.418  Sum_probs=132.1

Q ss_pred             EEEEEEeCCeeeeeEEEEecCCCCChhHHHHHHHhcCCCcccccCcEEEEeccCeeEeeCccccCcccccccCCCC-CCc
Q 020718          101 VFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHGGVRSYGVDAELARRSGS-NLE  179 (322)
Q Consensus       101 v~~di~i~g~~~GrIvIeL~~d~aP~tv~nF~~L~~~~~g~~Y~g~~f~Rvi~gfviQgGd~~~~~~~~~~~g~gg-~~~  179 (322)
                      |.|+++     .|+|+||||++.||+||+||++||+++   +|+|+.||||+++|||||||+..       ++.|+ ++|
T Consensus         3 v~~~T~-----~G~i~ieL~~~~aP~t~~NF~~L~~~g---~Y~g~~fhRvi~~f~iQgGd~~~-------~g~gg~si~   67 (161)
T 2ok3_A            3 VTLHTD-----VGDIKIEVFCERTPKTCENFLALCASN---YYNGCIFHRNIKGFMVQTGDPTG-------TGRGGNSIW   67 (161)
T ss_dssp             EEEEET-----TEEEEEEECTTTCHHHHHHHHHHHHTT---TTTTCBCCEEETTTEEEECCTTS-------SSSCCCCTT
T ss_pred             EEEEeC-----CccEEEEEcCCCCcHHHHHHHHHhhhc---ccCCCEEEEEECCCEEecCCCCC-------CCCCCCccc
Confidence            455555     999999999999999999999999999   99999999999999999999863       45655 778


Q ss_pred             cccchhhhccCCCCCCCCCCCCCceeeeecCCCCCCcchhhhhccCcceeeccccCCCCCcceEEEEcCCCCCCCCCCcE
Q 020718          180 TERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLV  259 (322)
Q Consensus       180 ~~~~~~E~~~~~~~~~g~~~~~G~v~m~v~~~~~~~~~~~l~ar~G~l~m~~an~~p~s~gSqFfItl~~~p~LDg~~~V  259 (322)
                      ++.+++|+...     ..|+.+|+|+|                         +|.++|+++|||||+++++++||++|+|
T Consensus        68 g~~~~dE~~~~-----l~h~~~G~lsm-------------------------a~~gp~s~~SQFfI~~~~~~~Ldg~~tv  117 (161)
T 2ok3_A           68 GKKFEDEYSEY-----LKHNVRGVVSM-------------------------ANNGPNTNGSQFFITYGKQPHLDMKYTV  117 (161)
T ss_dssp             SSCBCCCCCTT-----CCSCSTTEEEE-------------------------CCSSTTCBCSCEEEESSCCGGGTTTSCE
T ss_pred             CCccccccCcC-----cCcCCCeEEEE-------------------------ecCCCCCcceEEEEEcCCCCccCCCEeE
Confidence            88888775321     12456777776                         5677999999999999999999999999


Q ss_pred             EEEEEcCHHHHHHHhcCccccCCCCCCcchhhhhccccchhhcccCCCCCCccEEEeeeeecC
Q 020718          260 VGRVLEGMEVAEKIGEVKTVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNCGLME  322 (322)
Q Consensus       260 FGrVi~Gmdvl~~I~~~~t~~~~~~~~~~~~~~~~gd~~~~~a~~~~~~P~~~V~I~~cG~l~  322 (322)
                      ||||++|||||++|++++++.++                        ++|.++|+|.+|++++
T Consensus       118 FG~Vv~G~dvv~~I~~~~~~~~~------------------------~~P~~~v~I~~~~i~~  156 (161)
T 2ok3_A          118 FGKVIDGLETLDELEKLPVNEKT------------------------YRPLNDVHIKDITIHA  156 (161)
T ss_dssp             EEEEEECHHHHHHHHTCCBCTTT------------------------CCBSSCCBEEEEEEEC
T ss_pred             EEEEeCCHHHHHHHHhCCccCCC------------------------CCcCCCeEEEEEEEec
Confidence            99999999999999999997642                        6999999999999874

>2a2n_A Peptidylprolyl isomerase domain and WD repeat CON; CIS-trans isomerization, protein-folding, peptidylprolyl ISO structural genomics; 1.65A {Homo sapiens} SCOP: b.62.1.1

Probab=100.00  E-value=7.3e-43  Score=307.05  Aligned_cols=159  Identities=23%  Similarity=0.398  Sum_probs=135.9

Q ss_pred             cCCCCCCceEEEEEEeCCeeeeeEEEEecCCCCChhHHHHHHHhcCCCcccccCcEEEEeccCeeEeeCccccCcccccc
Q 020718           92 CANKDPTKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHGGVRSYGVDAELA  171 (322)
Q Consensus        92 ~~~~~~~~~v~~di~i~g~~~GrIvIeL~~d~aP~tv~nF~~L~~~~~g~~Y~g~~f~Rvi~gfviQgGd~~~~~~~~~~  171 (322)
                      +.+......|.++++     .|+|+||||++.||+||+||++||+.+   ||+|+.||||+++|||||||+..       
T Consensus        15 ~~~~~~~~~v~~~t~-----~G~i~ieL~~~~aP~t~~NF~~L~~~g---~Y~g~~FhRvi~~f~iQgGd~~~-------   79 (176)
T 2a2n_A           15 EGPKRVSDSAIIHTS-----MGDIHTKLFPVECPKTVENFCVHSRNG---YYNGHTFHRIIKGFMIQTGDPTG-------   79 (176)
T ss_dssp             CSCCCCCSEEEEEET-----TEEEEEEECTTTCHHHHHHHHHHHHTT---TTTTCBCCEEETTTEEEECCTTS-------
T ss_pred             CCCCCCCCEEEEEec-----CccEEEEEeCCCChHHHHHHHHHhhcC---ccCCCEEEEEECCcEEEccCCCC-------
Confidence            334455667888887     999999999999999999999999999   99999999999999999999852       


Q ss_pred             cCCCC-CCccccchhhhccCCCCCCCCCCCCCceeeeecCCCCCCcchhhhhccCcceeeccccCCCCCcceEEEEcCCC
Q 020718          172 RRSGS-NLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDS  250 (322)
Q Consensus       172 ~g~gg-~~~~~~~~~E~~~~~~~~~g~~~~~G~v~m~v~~~~~~~~~~~l~ar~G~l~m~~an~~p~s~gSqFfItl~~~  250 (322)
                      +++|+ ++|++.|++|+....     .|+.+|+|+|                         +|.++|+++|||||++.++
T Consensus        80 ~g~gg~si~g~~~~dE~~~~l-----~h~~~G~lsm-------------------------A~~gp~s~gSQFFIt~~~~  129 (176)
T 2a2n_A           80 TGMGGESIWGGEFEDEFHSTL-----RHDRPYTLSM-------------------------ANAGSNTNGSQFFITVVPT  129 (176)
T ss_dssp             SSSCCCCTTSSCBCCCCCTTC-----CSCSSSEEEE-------------------------CCSSTTCBCSCEEEESSCC
T ss_pred             CCCCCCcccCCcccccccccc-----ccCCceEEEE-------------------------EeCCCCCcccEEEEECCCC
Confidence            56666 678888888764211     1345566666                         5678999999999999999


Q ss_pred             CCCCCCCcEEEEEEcCHHHHHHHhcCccc-cCCCCCCcchhhhhccccchhhcccCCCCCCccEEEeeeee
Q 020718          251 PELDASSLVVGRVLEGMEVAEKIGEVKTV-QENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNCGL  320 (322)
Q Consensus       251 p~LDg~~~VFGrVi~Gmdvl~~I~~~~t~-~~~~~~~~~~~~~~~gd~~~~~a~~~~~~P~~~V~I~~cG~  320 (322)
                      ++||++|+|||||++|||||++|++++++ .+                         ++|.++|+|.+|.+
T Consensus       130 ~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~-------------------------~~P~~~v~I~~v~v  175 (176)
T 2a2n_A          130 PWLDNKHTVFGRVTKGMEVVQRISNVKVNPKT-------------------------DKPYEDVSIINITV  175 (176)
T ss_dssp             GGGTTTSCEEEEEEECHHHHHHHHTSCBCTTT-------------------------CCBSSCCBEEEEEE
T ss_pred             CccCCCeeEEEEEeCCHHHHHHHHcCCccCCC-------------------------CccCCCeEEEEEEE
Confidence            99999999999999999999999999998 33                         79999999999975

>3bo7_A Peptidyl-prolyl CIS-trans isomerase cyclophilin-T; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, structural G structural genomics consortium, SGC; HET: BMT; 2.35A {Toxoplasma gondii}

Probab=100.00  E-value=1.8e-42  Score=310.67  Aligned_cols=154  Identities=20%  Similarity=0.330  Sum_probs=128.7

Q ss_pred             CceEEEEEEeCCeeeeeEEEEecCCCCChhHHHHHHHhcCCCcccccCcEEEEeccCeeEeeC-----ccccCccccccc
Q 020718           98 TKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHGG-----VRSYGVDAELAR  172 (322)
Q Consensus        98 ~~~v~~di~i~g~~~GrIvIeL~~d~aP~tv~nF~~L~~~~~g~~Y~g~~f~Rvi~gfviQgG-----d~~~~~~~~~~~  172 (322)
                      +..|.|+++     .|+|+||||++.||+||+||++||+.+   ||+|+.||||+++||||||     |+..       +
T Consensus         6 ~~~v~l~T~-----~G~i~ieL~~~~aP~t~~NF~~L~~~g---~Ydg~~FhRvi~~f~iQgG~~~~~Dp~~-------~   70 (201)
T 3bo7_A            6 KGYLRIVTT-----QGSLNIELHADMAPRACDSFLRLCAVK---YFDDTIFHRCIRNFMIQGGRAELRQPSK-------K   70 (201)
T ss_dssp             CEEEEEEET-----TEEEEEEECTTTCHHHHHHHHHHHHTT---TTTTCBEEEEETTTEEEECCGGGCCC----------
T ss_pred             ceEEEEEeC-----CCCEEEEEcCCCCcHHHHHHHHHHhcC---ccCCCEEEEeeCCCEEEcCcccccCCCC-------C
Confidence            456777776     999999999999999999999999999   9999999999999999999     8752       4


Q ss_pred             CCCC-CCc-------cccchhhhccCCCCCCCC-CCCCCceeeeecCCCCCCcchhhhhccCcceeeccccCCCCCcceE
Q 020718          173 RSGS-NLE-------TERLMEEWKANNERCPGT-KNLAGTVGIIVRDPSKPPPKIKLVARQGKLEIDQEEVGKDPNGTEF  243 (322)
Q Consensus       173 g~gg-~~~-------~~~~~~E~~~~~~~~~g~-~~~~G~v~m~v~~~~~~~~~~~l~ar~G~l~m~~an~~p~s~gSqF  243 (322)
                      +.|+ ++|       ++.|.+|+.      +.+ |+.+|+|+|                         +|.++|++||||
T Consensus        71 g~gg~si~~~~~~~~g~~f~dE~~------~~l~h~~~G~lsm-------------------------A~~gp~s~gSQF  119 (201)
T 3bo7_A           71 KEVQQSPRSISGFPGGAPFEDEFD------NRLVHQGIGVLSM-------------------------ANDGKHSNLSEF  119 (201)
T ss_dssp             ----CCSSCCCSSTTCCCBCCCCC------TTCCCCSTTEEEE-------------------------CCSSTTCBSSCE
T ss_pred             CCCCccccccccccCCCcccCccc------CCCCcCCCcEEEE-------------------------eeCCCCCcccEE
Confidence            5555 566       666776642      122 345666666                         567899999999


Q ss_pred             EEEcCCCCCCCCCCcEEEEEEcCHHHHHHHhcCccccCCCCCCcchhhhhccccchhhcccCCCCCCccEEEeeeeecC
Q 020718          244 VIVTKDSPELDASSLVVGRVLEGMEVAEKIGEVKTVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNCGLME  322 (322)
Q Consensus       244 fItl~~~p~LDg~~~VFGrVi~Gmdvl~~I~~~~t~~~~~~~~~~~~~~~~gd~~~~~a~~~~~~P~~~V~I~~cG~l~  322 (322)
                      ||+++++++||++|+|||+|++|||||++|++++++.+                         ++|.++|+|.+|++++
T Consensus       120 FIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~-------------------------~~P~~~i~I~~~~v~~  173 (201)
T 3bo7_A          120 FITFKSCEHLNNKHTIFGRVVGGLDVLRQWEKLETDKK-------------------------DKPLKPPKVEEIIVFK  173 (201)
T ss_dssp             EEESSCCGGGTTTSCEEEEEEECHHHHHHHTTCCBCTT-------------------------SCBSSCCBEEEEEEEE
T ss_pred             EEECCCCcccCCCceEEEEEecCHHHHHHHHhCCcCCC-------------------------CCcCCCeEEEEEEEEc
Confidence            99999999999999999999999999999999999875                         7999999999999973

>1v9t_A Cyclophilin B; beta barrel, isomerase-isomerase inhibitor complex; HET: NIT; 1.70A {Escherichia coli} SCOP: b.62.1.1 PDB: 1j2a_A* 1vai_A* 1clh_A

Probab=100.00  E-value=2.5e-42  Score=301.18  Aligned_cols=157  Identities=27%  Similarity=0.419  Sum_probs=131.4

Q ss_pred             CceEEEEEEeCCeeeeeEEEEecCCCCChhHHHHHHHhcCCCcccccCcEEEEeccCeeEeeCccccCcccccccCCCCC
Q 020718           98 TKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHGGVRSYGVDAELARRSGSN  177 (322)
Q Consensus        98 ~~~v~~di~i~g~~~GrIvIeL~~d~aP~tv~nF~~L~~~~~g~~Y~g~~f~Rvi~gfviQgGd~~~~~~~~~~~g~gg~  177 (322)
                      +++|+|+++     .|+|+||||++.||+||+||++||+.+   ||+|+.||||+++|||||||++..        .++.
T Consensus         4 ~~~v~~~t~-----~G~i~ieL~~~~aP~t~~NF~~L~~~g---~Y~g~~FhRvi~~f~iQgGd~~~~--------~~~~   67 (166)
T 1v9t_A            4 DPHVLLTTS-----AGNIELELDKQKAPVSVQNFVDYVNSG---FYNNTTFHRVIPGFMIQGGGFTEQ--------MQQK   67 (166)
T ss_dssp             SCEEEEEET-----TEEEEEEECTTTCHHHHHHHHHHHHTT---TTTTCBEEEEETTTEEEESSBCTT--------CCBC
T ss_pred             CeEEEEEeC-----CccEEEEEcCCCCcHHHHHHHHHhccC---CCCCCEEEEEECCcEEEcCCcCcC--------CCCC
Confidence            568999988     999999999999999999999999999   999999999999999999998642        1222


Q ss_pred             CccccchhhhccCCCCCCCCCCCCCceeeeecCCCCCCcchhhhhccCcceeecccc-CCCCCcceEEEEcCCCCCCCCC
Q 020718          178 LETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQGKLEIDQEEV-GKDPNGTEFVIVTKDSPELDAS  256 (322)
Q Consensus       178 ~~~~~~~~E~~~~~~~~~g~~~~~G~v~m~v~~~~~~~~~~~l~ar~G~l~m~~an~-~p~s~gSqFfItl~~~p~LDg~  256 (322)
                      .+++.+.+|+..      +++|.+|+|+|                         +|. +||+|+|||||++.+.++||++
T Consensus        68 ~~g~~~~dE~~~------~l~~~~G~lsm-------------------------A~~~~p~t~gSQFfI~~~~~~~Ld~~  116 (166)
T 1v9t_A           68 KPNPPIKNEADN------GLRNTRGTIAM-------------------------ARTADKDSATSQFFINVADNAFLDHG  116 (166)
T ss_dssp             CCCCCBCCCGGG------SCCCCTTEEEE-------------------------CCCSSTTCBCSCEEEESSCCGGGSCC
T ss_pred             CCCCcccccccc------cccCCceEEEE-------------------------eecCCCCCccceEEEEeCCccccCCc
Confidence            345567666532      23566777776                         343 5999999999999999999998


Q ss_pred             -----CcEEEEEEcCHHHHHHHhcCccccCCCCCCcchhhhhccccchhhcccCCCCCCccEEEeeeeecC
Q 020718          257 -----SLVVGRVLEGMEVAEKIGEVKTVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNCGLME  322 (322)
Q Consensus       257 -----~~VFGrVi~Gmdvl~~I~~~~t~~~~~~~~~~~~~~~~gd~~~~~a~~~~~~P~~~V~I~~cG~l~  322 (322)
                           |+|||+|++|||||++|++++++...                     ...++|.++|+|.+|+++|
T Consensus       117 ~~~~~~tvFG~Vv~G~dvv~~I~~~~~~~~~---------------------~~~~~P~~~v~I~~~~v~~  166 (166)
T 1v9t_A          117 QRDFGYAVFGKVVKGMDVADKISQVPTHDVG---------------------PYQNVPSKPVVILSATVLP  166 (166)
T ss_dssp             SSCCCCCEEEEEEECHHHHHHHHTSCEEEET---------------------TEEEEESSCCBEEEEEECC
T ss_pred             cCcCCeeEEEEEecCHHHHHHHHhCCCCCCC---------------------ccCCCcCCCeEEEEEEEeC
Confidence                 99999999999999999999997620                     0016999999999999986

>1w74_A Peptidyl-prolyl CIS-trans isomerase A; cyclophilin, ppiase, RV0009, rotamase, structural proteomics in europe, spine; 2.6A {Mycobacterium tuberculosis} SCOP: b.62.1.1

Probab=100.00  E-value=3.4e-42  Score=306.28  Aligned_cols=157  Identities=23%  Similarity=0.408  Sum_probs=132.5

Q ss_pred             CCCceEEEEEEeCCeeeeeEEEEecCCCCChhHHHHHHHhcCCCc------------ccccCcEEEEeccCeeEeeCccc
Q 020718           96 DPTKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAG------------ISYRRKEFIKIMPNYVQHGGVRS  163 (322)
Q Consensus        96 ~~~~~v~~di~i~g~~~GrIvIeL~~d~aP~tv~nF~~L~~~~~g------------~~Y~g~~f~Rvi~gfviQgGd~~  163 (322)
                      ..+..|.|+++     .|+|+||||++.||+||+||++||++.++            .+|+|+.||||+++|||||||+.
T Consensus        21 ~~~~~v~l~t~-----~G~I~ieL~~~~aP~tv~NF~~L~tG~~~~~~~~~g~~~~~~~Y~g~~FhRVi~~fmiQgGd~~   95 (191)
T 1w74_A           21 LATATATLHTN-----RGDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQGGDPT   95 (191)
T ss_dssp             CCSEEEEEEET-----TEEEEEEECTTTSHHHHHHHHHHHHTCSCCSSCCTTBSSSSCSSTTEEEEEEETTTEEEECCTT
T ss_pred             CCCeEEEEEec-----ceeEEEEEcCCCChHHHHHHHHHhcCCcccccccccccccCCccCCCEEEEEeCCCEEecCCCC
Confidence            33567888877     99999999999999999999999954322            38999999999999999999975


Q ss_pred             cCcccccccCCCCCCccccchhhhccCCCCCCCCCCCCCceeeeecCCCCCCcchhhhhccCcceeeccccCCCCCcceE
Q 020718          164 YGVDAELARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQGKLEIDQEEVGKDPNGTEF  243 (322)
Q Consensus       164 ~~~~~~~~~g~gg~~~~~~~~~E~~~~~~~~~g~~~~~G~v~m~v~~~~~~~~~~~l~ar~G~l~m~~an~~p~s~gSqF  243 (322)
                      .       +++|+  +++.|++|+...     ..|+.+|+|+|                         +|.+||+|+|||
T Consensus        96 g-------~G~gg--~g~~f~dE~~~~-----l~h~~~G~lsM-------------------------An~gpntngSQF  136 (191)
T 1w74_A           96 G-------TGRGG--PGYKFADEFHPE-----LQFDKPYLLAM-------------------------ANAGPGTNGSQF  136 (191)
T ss_dssp             S-------SSSCC--SSCCBCCCCCTT-----CCSCSSSEEEE-------------------------CCSSTTCBSSCE
T ss_pred             C-------CCCCC--CCCccccccccC-----CCcCCCcEEEE-------------------------eeCCCCCccceE
Confidence            2       45555  667888875311     11445666666                         567899999999


Q ss_pred             EEEcCCCCCCCCCCcEEEEEEc--CHHHHHHHhcCccccCCCCCCcchhhhhccccchhhcccCCCCCCccEEEeeeeec
Q 020718          244 VIVTKDSPELDASSLVVGRVLE--GMEVAEKIGEVKTVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNCGLM  321 (322)
Q Consensus       244 fItl~~~p~LDg~~~VFGrVi~--Gmdvl~~I~~~~t~~~~~~~~~~~~~~~~gd~~~~~a~~~~~~P~~~V~I~~cG~l  321 (322)
                      ||++.++++||++|+|||||++  |||||++|++++++.+                         ++|.++|+|.+|+++
T Consensus       137 FIt~~~~~~LDg~~tVFG~Vv~~~Gmdvv~~I~~~~t~~~-------------------------~~P~~~v~I~~~~i~  191 (191)
T 1w74_A          137 FITVGKTPHLNRRHTIFGEVIDAESQRVVEAISKTATDGN-------------------------DRPTDPVVIESITIS  191 (191)
T ss_dssp             EEESSCCGGGTTTSCEEEEECSHHHHHHHHHHHTSCBCTT-------------------------SCBSSCCEEEEEEEC
T ss_pred             EEEcCCCcccCCCeeEEEEEEECCCHHHHHHHHcCCcCCC-------------------------CCcCCCeEEEEEEEC
Confidence            9999999999999999999999  9999999999999875                         799999999999985

>1lop_A Cyclophilin A; rotamase, isomerase-isomerase inhibitor complex; HET: NIT; 1.80A {Escherichia coli} SCOP: b.62.1.1 PDB: 2nul_A 2rs4_A

Probab=100.00  E-value=1e-42  Score=303.05  Aligned_cols=155  Identities=24%  Similarity=0.347  Sum_probs=129.7

Q ss_pred             EEEEEEeCCeeeeeEEEEecCCCCChhHHHHHHHhcCCCcccccCcEEEEeccCeeEeeCccccCcccccccCCCCCCcc
Q 020718          101 VFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHGGVRSYGVDAELARRSGSNLET  180 (322)
Q Consensus       101 v~~di~i~g~~~GrIvIeL~~d~aP~tv~nF~~L~~~~~g~~Y~g~~f~Rvi~gfviQgGd~~~~~~~~~~~g~gg~~~~  180 (322)
                      |.|+++     .|+|+||||++.||+||+||++||+.+   ||+|+.||||+++|||||||+..+        .|.++++
T Consensus         2 v~l~T~-----~G~i~ieL~~~~aP~t~~NF~~L~~~g---~Y~g~~FhRvi~~f~iQgGd~~~~--------~g~~~~g   65 (164)
T 1lop_A            2 VTFHTN-----HGDIVIKTFDDKAPETVKNFLDYCREG---FYNNTIFHRVINGFMIQGGGFEPG--------MKQKATK   65 (164)
T ss_dssp             EEEEET-----TEEEEEEECTTTSHHHHHHHHHHHHTT---TTTTEECCEEETTTEEEESSEETT--------TEECCCC
T ss_pred             EEEEeC-----CCCEEEEEeCCCCcHHHHHHHHHHhcC---CCCCCEEEEEeCCceEecCCcccC--------CCcCCCC
Confidence            556666     999999999999999999999999999   999999999999999999998632        2335567


Q ss_pred             ccchhhhccCCCCCCCCCCCCCceeeeecCCCCCCcchhhhhccCcceeeccccCCCCCcceEEEEcCCCCCCCCC----
Q 020718          181 ERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDAS----  256 (322)
Q Consensus       181 ~~~~~E~~~~~~~~~g~~~~~G~v~m~v~~~~~~~~~~~l~ar~G~l~m~~an~~p~s~gSqFfItl~~~p~LDg~----  256 (322)
                      +.|++|+.      .+++|.+|+|+|+                       + +.+||+++|||||++.+.++||++    
T Consensus        66 ~~~~dE~~------~~l~~~~G~lsmA-----------------------~-~~~p~s~gSQFfI~~~~~~~Ld~~~~~~  115 (164)
T 1lop_A           66 EPIKNEAN------NGLKNTRGTLAMA-----------------------R-TQAPHSATAQFFINVVDNDFLNFSGESL  115 (164)
T ss_dssp             CCBCCCCC------SSCCCCTTEEEEC-----------------------C-CSSTTCBCSCEEEESSCCGGGSCCSSST
T ss_pred             Cccccccc------cccccCccEEEEe-----------------------e-cCCCCCccceEEEEcCCccccCCccccc
Confidence            77877753      2345667777772                       1 246999999999999999999998    


Q ss_pred             ----CcEEEEEEcCHHHHHHHhcCccccCCCCCCcchhhhhccccchhhcccCCCCCCccEEEeeeeecC
Q 020718          257 ----SLVVGRVLEGMEVAEKIGEVKTVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNCGLME  322 (322)
Q Consensus       257 ----~~VFGrVi~Gmdvl~~I~~~~t~~~~~~~~~~~~~~~~gd~~~~~a~~~~~~P~~~V~I~~cG~l~  322 (322)
                          |+|||+|++|||||++|++++++...                     ...++|.++|+|.+|+++|
T Consensus       116 ~~~~~tvFG~Vv~G~dvv~~I~~~~t~~~~---------------------~~~~~P~~~v~I~~~~v~~  164 (164)
T 1lop_A          116 QGWGYCVFAEVVDGMDEVDKIKGVATGRSG---------------------MHQDVPKEDVIIESVTVSE  164 (164)
T ss_dssp             TTSCCCEEEEEEECHHHHHHHHTSCEEEET---------------------TEEEEESSCCEEEEEEECC
T ss_pred             cCCceEEEEEEecCHHHHHHHHhCCcCCcc---------------------ccCCCcCCCeEEEEEEEeC
Confidence                99999999999999999999997510                     0016999999999999986

>2hq6_A Serologically defined colon cancer antigen 10; protein folding, peptidyl-prolyl CIS-trans isomerase, struct genomics; 1.75A {Homo sapiens}

Probab=100.00  E-value=5.9e-42  Score=303.41  Aligned_cols=158  Identities=23%  Similarity=0.431  Sum_probs=135.9

Q ss_pred             CCCCCceEEEEEEeCCeeeeeEEEEecCCCCChhHHHHHHHhcCCCcccccCcEEEEeccCeeEeeCccccCcccccccC
Q 020718           94 NKDPTKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHGGVRSYGVDAELARR  173 (322)
Q Consensus        94 ~~~~~~~v~~di~i~g~~~GrIvIeL~~d~aP~tv~nF~~L~~~~~g~~Y~g~~f~Rvi~gfviQgGd~~~~~~~~~~~g  173 (322)
                      .+..+.+|+|+++     .|+|+||||++.||+||+||++||+.+   +|+|+.||||+++|||||||+..       ++
T Consensus        20 ~~~~~~~V~l~T~-----~G~I~ieL~~~~aP~tv~NF~~L~~~g---~Y~g~~FhRvi~~f~iQgGd~~~-------~g   84 (185)
T 2hq6_A           20 EPPTNGKVLLKTT-----AGDIDIELWSKEAPKACRNFIQLCLEA---YYDNTIFHRVVPGFIVQGGDPTG-------TG   84 (185)
T ss_dssp             CCCCBCEEEEEET-----TEEEEEEEBTTTCHHHHHHHHHHHHTT---TTTTEECCEEETTTEEEECCTTS-------SS
T ss_pred             CCCCCCEEEEEeC-----CccEEEEEeCCCCcHHHHHHHHHhhcC---ccCCCEEEEEECCCEEEcCCCCC-------CC
Confidence            3445778999998     999999999999999999999999999   99999999999999999999862       56


Q ss_pred             CCC-CCccccchhhhccCCCCCCCCCCCCCceeeeecCCCCCCcchhhhhccCcceeeccccCCCCCcceEEEEcCCCCC
Q 020718          174 SGS-NLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPE  252 (322)
Q Consensus       174 ~gg-~~~~~~~~~E~~~~~~~~~g~~~~~G~v~m~v~~~~~~~~~~~l~ar~G~l~m~~an~~p~s~gSqFfItl~~~p~  252 (322)
                      +|+ ++|++.|++|+....     .++.+|+|+|                         +|.++|+++|||||+++++++
T Consensus        85 ~gg~si~g~~~~dE~~~~l-----~h~~~G~lsM-------------------------A~~g~~s~gSQFFIt~~~~~~  134 (185)
T 2hq6_A           85 SGGESIYGAPFKDEFHSRL-----RFNRRGLVAM-------------------------ANAGSHDNGSQFFFTLGRADE  134 (185)
T ss_dssp             SCCCCTTSSCBCCCCBTTB-----CSCSSSEEEE-------------------------CCSSTTCBCSCEEEESSCCGG
T ss_pred             CCCCcccCCccccccccCc-----ccCCCeEEEE-------------------------ccCCCCCccceEEEECCCCCc
Confidence            665 778888888764211     1456777776                         567799999999999999999


Q ss_pred             CCCCCcEEEEEEcCHHHH--HHHhcCccccCCCCCCcchhhhhccccchhhcccCCCCCCccEEEeeeeecC
Q 020718          253 LDASSLVVGRVLEGMEVA--EKIGEVKTVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNCGLME  322 (322)
Q Consensus       253 LDg~~~VFGrVi~Gmdvl--~~I~~~~t~~~~~~~~~~~~~~~~gd~~~~~a~~~~~~P~~~V~I~~cG~l~  322 (322)
                      ||++|+|||||+ ||+++  ++|++++++.+                         ++|.++|+|.+|++++
T Consensus       135 LDg~~tVFG~V~-G~~v~~~~~i~~~~~~~~-------------------------~~P~~~v~I~~~~v~~  180 (185)
T 2hq6_A          135 LNNKHTIFGKVT-GDTVYNMLRLSEVDIDDD-------------------------ERPHNPHKIKSCEVLF  180 (185)
T ss_dssp             GTTTSCEEEEEC-GGGHHHHHHTTCSCBCTT-------------------------SCBSSCCEEEEEEEEE
T ss_pred             cCCCceEEEEEE-eCeeehhhHHhhCCcCCC-------------------------CCCCCCeEEEEEEEeC
Confidence            999999999999 88874  68999988765                         8999999999999973

>3s6m_A Peptidyl-prolyl CIS-trans isomerase; seattle structural genomics center for infectious disease; 1.65A {Burkholderia pseudomallei} SCOP: b.62.1.1 PDB: 3t1u_A*

Probab=100.00  E-value=7.6e-42  Score=298.35  Aligned_cols=156  Identities=23%  Similarity=0.309  Sum_probs=129.9

Q ss_pred             CceEEEEEEeCCeeeeeEEEEecCCCCChhHHHHHHHhcCCCcccccCcEEEEeccCeeEeeCccccCcccccccCCCCC
Q 020718           98 TKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHGGVRSYGVDAELARRSGSN  177 (322)
Q Consensus        98 ~~~v~~di~i~g~~~GrIvIeL~~d~aP~tv~nF~~L~~~~~g~~Y~g~~f~Rvi~gfviQgGd~~~~~~~~~~~g~gg~  177 (322)
                      .+.|.|+++     .|+|+||||++.||+||+||++||+++   ||+|+.||||+++|||||||++.+        .++.
T Consensus         3 ~~~v~l~T~-----~G~i~ieL~~~~aP~t~~NF~~L~~~g---~Y~g~~FhRvi~~f~iQgGd~~~~--------~~~~   66 (167)
T 3s6m_A            3 GSMVELHTN-----HGVIKLELDEAKAPKTVENFLNYVKKG---HYDGTIFHRVINGFMIQGGGFEPG--------LKQK   66 (167)
T ss_dssp             CCEEEEEET-----TEEEEEEECTTTCHHHHHHHHHHHHHT---TTTTEECCEEETTTEEEESSEETT--------TEEC
T ss_pred             CcEEEEEeC-----CceEEEEEeCCCCcHHHHHHHHHhhhc---ccCCCEeEEecCCcEEEeccccCC--------CCCC
Confidence            557888888     999999999999999999999999999   999999999999999999998642        1112


Q ss_pred             CccccchhhhccCCCCCCCCCCCCCceeeeecCCCCCCcchhhhhccCcceeeccc-cCCCCCcceEEEEcCCCCCCCCC
Q 020718          178 LETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQGKLEIDQEE-VGKDPNGTEFVIVTKDSPELDAS  256 (322)
Q Consensus       178 ~~~~~~~~E~~~~~~~~~g~~~~~G~v~m~v~~~~~~~~~~~l~ar~G~l~m~~an-~~p~s~gSqFfItl~~~p~LDg~  256 (322)
                      .+++.+.+|+..      .++|.+|+|+|                         +| .+||+|||||||++.+.++||++
T Consensus        67 ~~~~~~~~E~~~------~l~~~~G~lsm-------------------------A~~~~p~t~gSQFfI~~~~~~~Ld~~  115 (167)
T 3s6m_A           67 PTDAPIANEANN------GLKNDTYTIAM-------------------------ARTNDPHSATAQFFINVNDNEFLNHS  115 (167)
T ss_dssp             CCCCCBCCCGGG------CCCCCTTEEEE-------------------------CCCSSTTCBCSCEEEESSCCGGGSCC
T ss_pred             CCCCccCCcccc------cccCCccEEEE-------------------------ecCCCCCCccceEEEEcCCchhcCCc
Confidence            344566666432      24567777777                         34 46999999999999999999998


Q ss_pred             --------CcEEEEEEcCHHHHHHHhcCccccCCCCCCcchhhhhccccchhhcccCCCCCCccEEEeeeeec
Q 020718          257 --------SLVVGRVLEGMEVAEKIGEVKTVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNCGLM  321 (322)
Q Consensus       257 --------~~VFGrVi~Gmdvl~~I~~~~t~~~~~~~~~~~~~~~~gd~~~~~a~~~~~~P~~~V~I~~cG~l  321 (322)
                              |+|||||++|||||++|++++++...                     ...++|.++|+|.+|.+|
T Consensus       116 ~~~~~~~~~~VFG~Vv~G~dvv~~I~~~~t~~~~---------------------~~~~~P~~~v~I~~~~il  167 (167)
T 3s6m_A          116 SPTPQGWGYAVFGKVVEGQDIVDKIKAVKTGSKG---------------------FHQDVPNDDVVIEKAVVV  167 (167)
T ss_dssp             SSSTTTCCCCEEEEEEECHHHHHHHTTSCBBC------------------------CBTCBSSCCEEEEEEEC
T ss_pred             ccccCCCCceEEEEEEcCHHHHHHHHcCCcCCCc---------------------ccCCCcCCCeEEEEEEEC
Confidence                    99999999999999999999998620                     001799999999999986

>3bkp_A Cyclophilin; malaria, isomerase, structural GENO structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}

Probab=100.00  E-value=7.6e-41  Score=305.70  Aligned_cols=158  Identities=19%  Similarity=0.360  Sum_probs=133.8

Q ss_pred             CCCCCceEEEEEEeCCeeeeeEEEEecCCCCChhHHHHHHHhcCCCcccccCcEEEEeccCeeEeeCccccCcccccccC
Q 020718           94 NKDPTKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHGGVRSYGVDAELARR  173 (322)
Q Consensus        94 ~~~~~~~v~~di~i~g~~~GrIvIeL~~d~aP~tv~nF~~L~~~~~g~~Y~g~~f~Rvi~gfviQgGd~~~~~~~~~~~g  173 (322)
                      .+..+..|+|+++     +|+|+||||++.||+||+||++||+.+   ||+|+.||||+++|||||||+..       ++
T Consensus        17 ~p~~~~~V~l~T~-----~G~I~ieL~~d~aP~tv~NF~~L~~~g---~Ydgt~FhRVi~~FmiQgGdp~~-------~G   81 (232)
T 3bkp_A           17 QGSTRGKVVLHTS-----LGDLDVELWARECPLACRNFVQLCLEG---YYVNTIFHRVVKDFIVQGGDPTG-------TG   81 (232)
T ss_dssp             CCSCBCEEEEEET-----TEEEEEEEBTTTCHHHHHHHHHHHHHT---TTTTCBEEEEETTTEEEECCTTS-------SS
T ss_pred             cCCCCCEEEEEEC-----CCcEEEEEcCCCCcHHHHHHHHHhhcC---ccCCCEEEEEeCCCEEEcCCCCC-------CC
Confidence            3445778999998     999999999999999999999999999   99999999999999999999863       56


Q ss_pred             CCC-CCc--cccchhhhccCCCCCCCCCCCCCceeeeecCCCCCCcchhhhhccCcceeeccccCC--------------
Q 020718          174 SGS-NLE--TERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQGKLEIDQEEVGK--------------  236 (322)
Q Consensus       174 ~gg-~~~--~~~~~~E~~~~~~~~~g~~~~~G~v~m~v~~~~~~~~~~~l~ar~G~l~m~~an~~p--------------  236 (322)
                      +|+ ++|  ++.|++|+...     ..++.+|+|+|+                         |.++              
T Consensus        82 ~Gg~si~~~g~~f~dE~~~~-----l~h~~~G~lsMA-------------------------~~g~~~~~~~n~e~g~~~  131 (232)
T 3bkp_A           82 RGGADTTFDGKPFDVETHPR-----LKFRYRGLVGVA-------------------------NLGRSSKDAENDERGRSL  131 (232)
T ss_dssp             SCCCCCTTTTCCBCCCCCTT-----CCCCSTTEEEEC-------------------------CCC---------------
T ss_pred             CCCCccccCCCccCCccccC-----cCcCCCeEEEEe-------------------------ccCCcccccccccccccC
Confidence            666 666  77788776321     124678888883                         3333              


Q ss_pred             CCCcceEEEEcCCCCCCCCCCcEEEEEEcCHHH--HHHHhcCccccCCCCCCcchhhhhccccchhhcccCCCCCCccEE
Q 020718          237 DPNGTEFVIVTKDSPELDASSLVVGRVLEGMEV--AEKIGEVKTVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVL  314 (322)
Q Consensus       237 ~s~gSqFfItl~~~p~LDg~~~VFGrVi~Gmdv--l~~I~~~~t~~~~~~~~~~~~~~~~gd~~~~~a~~~~~~P~~~V~  314 (322)
                      ++||||||||++++++||++|+|||+|+ ||++  |++|++++++.+                         ++|.++|+
T Consensus       132 ~sngSQFFIt~~~~p~LDg~~tVFG~Vv-g~~v~~v~kI~~~~t~~~-------------------------~~P~~~i~  185 (232)
T 3bkp_A          132 GTNGNQFFITLARADVLNNAYTLFGKVT-GHTLYNLMKFNDLEVGKE-------------------------DRPMTPPF  185 (232)
T ss_dssp             -CBCSCEEEESSCCGGGTTTSCEEEEEC-GGGHHHHHHHTTSCBCGG-------------------------GCBSSCCB
T ss_pred             CCcCCEEEEECCCCcccCCCccEEEEEE-eCchHHHHHHHcCCcCCC-------------------------CCcCCCeE
Confidence            6999999999999999999999999999 7766  899999999875                         79999999


Q ss_pred             EeeeeecC
Q 020718          315 VTNCGLME  322 (322)
Q Consensus       315 I~~cG~l~  322 (322)
                      |.+|++++
T Consensus       186 I~~~~vl~  193 (232)
T 3bkp_A          186 IKSVDVLW  193 (232)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEc
Confidence            99999973

>3rfy_A Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; cyclophilin, peptidyl prolyl isomerase, ppiase, TLP,; 2.39A {Arabidopsis thaliana}

Probab=100.00  E-value=4.4e-34  Score=275.54  Aligned_cols=162  Identities=19%  Similarity=0.213  Sum_probs=109.5

Q ss_pred             CceEEEEEEe--CC---eeeeeEEEEecCCCCChhHHHHHHHhcCCCcccccCcEEEEeccCeeEeeCccccCccccccc
Q 020718           98 TKRVFLDISI--DG---KSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHGGVRSYGVDAELAR  172 (322)
Q Consensus        98 ~~~v~~di~i--~g---~~~GrIvIeL~~d~aP~tv~nF~~L~~~~~g~~Y~g~~f~Rvi~gfviQgGd~~~~~~~~~~~  172 (322)
                      +.++++++++  .+   +..|+|+||||++.||+||+||++||+.+   ||||+.|||| +||||||||++.       +
T Consensus       168 ~gra~V~m~t~~~~~~~~~~G~I~IeL~~d~AP~Tv~NFl~L~~~G---fYdGt~FHRV-~gFmIQgGDp~g-------~  236 (369)
T 3rfy_A          168 KGRASVDMKVKIKDNPNIEDCVFRIVLDGYNAPVTAGNFVDLVERH---FYDGMEIQRS-DGFVVQTGDPEG-------P  236 (369)
T ss_dssp             CSEEEEEEEEECCSCSSCSEEEEEEEEETTTCHHHHHHHHHHHHTT---TTTTEECEEE-EEEEECCCCCCC-------C
T ss_pred             CCCeEEEEEEeccCCCcccceEEEEEEeCCCCcHHHHHHHHHhhcC---CcCCCeeeee-CCeeEecCCCCC-------C
Confidence            4555555544  33   35899999999999999999999999999   9999999999 999999999963       2


Q ss_pred             CCCC----CCccccchhhhccCCCCCCCCCCCCCceeeeecCCCCCCcchhhhhccCcceeeccccCCCCCcceEEEEc-
Q 020718          173 RSGS----NLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVT-  247 (322)
Q Consensus       173 g~gg----~~~~~~~~~E~~~~~~~~~g~~~~~G~v~m~v~~~~~~~~~~~l~ar~G~l~m~~an~~p~s~gSqFfItl-  247 (322)
                      ++|.    ...++.++.|+.......+........-++..      ......|+++|.|+||++..++|+|||||||++ 
T Consensus       237 G~G~~~~~~g~~~~iP~E~~~~G~g~piyg~~fedegf~~------~~~~L~h~~~G~LsMAns~~gPnSngSQFFItl~  310 (369)
T 3rfy_A          237 AEGFIDPSTEKTRTVPLEIMVTGEKTPFYGSTLEELGLYK------AQVVIPFNAFGTMAMAREEFENDSGSSQVFWLLK  310 (369)
T ss_dssp             CSCCCSCCCCCCCSSSSSSCSSSSCCSCCCSSTGGGTEEE------EEEEECCCCCCCCCCSSCCCCCCCSSCCCCCCCE
T ss_pred             CCCccCcccCcCcccCccccccCCCCCcCCCccccccccc------cccccccCCCceEEEeecCCCCCCccceEEEEec
Confidence            3331    01123344443221111111000000000000      000112456677777554347999999999999 


Q ss_pred             ------CCCCCCCCCCcEEEEEEcCHHHHHHHhcC
Q 020718          248 ------KDSPELDASSLVVGRVLEGMEVAEKIGEV  276 (322)
Q Consensus       248 ------~~~p~LDg~~~VFGrVi~Gmdvl~~I~~~  276 (322)
                            ...++||++|+|||||++|||||++|++.
T Consensus       311 d~~L~~~~~~~LDgkytVFG~VveGmdVVdkI~~G  345 (369)
T 3rfy_A          311 ESELTPSNSNILDGRYAVFGYVTDNEDFLADLKVG  345 (369)
T ss_dssp             EEEECSCCCSSSCSCEEEEEEEEESTTGGGGCCTT
T ss_pred             ccccCCCCCcccCCCeeEEEEEecCHHHHHHHhCC
Confidence                  46899999999999999999999999984

>3kop_A Uncharacterized protein; protein with A cyclophilin-like fold, structural genomics, J center for structural genomics, JCSG; 1.90A {Arthrobacter SP}

Probab=89.60  E-value=1.7  Score=37.62  Aligned_cols=34  Identities=15%  Similarity=0.267  Sum_probs=25.6

Q ss_pred             EEEEEEeCCeeeeeEEEEecCCCCChhHHHHHHHh
Q 020718          101 VFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLV  135 (322)
Q Consensus       101 v~~di~i~g~~~GrIvIeL~~d~aP~tv~nF~~L~  135 (322)
                      -|+.|++..... .++.+|..+.||+||+.|.++-
T Consensus        22 r~i~itl~~~g~-~~~A~Lldd~APkTcaA~~~~L   55 (188)
T 3kop_A           22 RYINITLEKRGV-TCKALLLDDVAPRTSKAVWDAL   55 (188)
T ss_dssp             CEEEEEETTTTE-EEEEEECTTTSHHHHHHHHHHC
T ss_pred             eEEEEEEecCCe-EEEEEEccccChHHHHHHHHhC
Confidence            467777643221 3788999999999999999964

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	322
d2cfea1	162	b.62.1.1 (A:1-162) Cyclophilin-like allergen Mal s	4e-23
d1xo7a_	166	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Trypanosom	5e-23
d1a33a_	174	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Nematode (	1e-20
d1h0pa_	182	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Caenorhabd	2e-20
d2rmca_	182	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Mouse (Mus	3e-20
d1qnga_	170	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Plasmodium	7e-20
d2igva1	172	b.62.1.1 (A:1-172) Cyclophilin (eukaryotic) {Caeno	2e-19
d2z6wa1	164	b.62.1.1 (A:2-165) Mitochondrial peptidyl-prolyl c	1e-18
d2r99a1	161	b.62.1.1 (A:139-299) Mitochondrial peptidyl-prolyl	4e-18
d1ihga2	195	b.62.1.1 (A:2-196) Cyclophilin 40 isomerase domain	2e-17
d1qoia_	173	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Human (Hom	3e-17
d2c3ba1	171	b.62.1.1 (A:1-171) Cyclophilin (eukaryotic) {Asper	1e-16
d1z81a1	186	b.62.1.1 (A:25-210) Cyclophilin (eukaryotic) {Plas	2e-13
d1xwna1	166	b.62.1.1 (A:1-166) Peptidyl-prolyl cis-trans isome	4e-12
d1w74a_	171	b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase	2e-10
d2ok3a1	159	b.62.1.1 (A:1-159) Cyclophilin-like protein PPIL3B	2e-10
d1zkca1	178	b.62.1.1 (A:280-457) Peptidyl-prolyl cis-trans iso	2e-10
d2b71a1	169	b.62.1.1 (A:23-191) Cyclophilin-like protein PY006	3e-10
d2a2na1	164	b.62.1.1 (A:483-646) Peptidylprolyl isomerase doma	1e-08
d2fu0a1	155	b.62.1.1 (A:5-159) Putative cyclophilin PFE0505w {	1e-07
d1v9ta_	166	b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase	3e-07
d1lopa_	164	b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase	9e-05

>d2cfea1 b.62.1.1 (A:1-162) Cyclophilin-like allergen Mal s 6 {Malassezia sympodialis [TaxId: 76777]} Length = 162

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like allergen Mal s 6
species: Malassezia sympodialis [TaxId: 76777]

 Score = 91.3 bits (226), Expect = 4e-23
 Identities = 48/221 (21%), Positives = 79/221 (35%), Gaps = 62/221 (28%)

Query: 100 RVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHG 159
            VF DI+ +G   G I   L+ D  P  AA F +L +G  G  Y    F +++P+++  G
Sbjct: 3   NVFFDITKNGAPLGTIKFKLFDDVVPKTAANFRALCTGEKGFGYAGSHFHRVIPDFMLQG 62

Query: 160 GVRSYGVDAELARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIK 219
           G  + G           N    + +   K  +E      N  G +               
Sbjct: 63  GDFTAG-----------NGTGGKSIYGAKFADENFQLKHNKPGLLS-------------- 97

Query: 220 LVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKIGEVKTV 279
            +A            G + NG++F I T  +  LD   +V G V++GM V + I    + 
Sbjct: 98  -MANA----------GPNTNGSQFFITTVVTSWLDGKHVVFGEVIDGMNVVKAIEAEGS- 145

Query: 280 QENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNCGL 320
                                    G  +P S++ +  CG+
Sbjct: 146 -------------------------GSGKPRSRIEIAKCGV 161

>d1xo7a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Trypanosoma cruzi [TaxId: 5693]} Length = 166

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Trypanosoma cruzi [TaxId: 5693]

 Score = 91.4 bits (226), Expect = 5e-23
 Identities = 48/222 (21%), Positives = 83/222 (37%), Gaps = 62/222 (27%)

Query: 98  TKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQ 157
           T +V+ DI+I  +  GR+VIGL+G+  P     F  L SG  G  Y+   F +++ N++ 
Sbjct: 5   TDKVYFDITIGDEPVGRVVIGLFGNDVPKTVENFKQLASGENGFGYKGSIFHRVIRNFMI 64

Query: 158 HGGVRSYGVDAELARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPK 217
            GG  +          +G         ++     +   G  ++A                
Sbjct: 65  QGGDFTNFDG------TGGKSIYGTRFDDENLKIKHFVGAVSMANA-------------- 104

Query: 218 IKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKIGEVK 277
                            G + NG++F + T  +P LD   +V G+V+EGM+V +K+   K
Sbjct: 105 -----------------GPNSNGSQFFVTTAPTPWLDGRHVVFGKVVEGMDVVKKVENTK 147

Query: 278 TVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNCG 319
           T                            ++P   V + +CG
Sbjct: 148 TGLN-------------------------DKPKKAVKINDCG 164

>d1a33a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Nematode (Brugia malayi) [TaxId: 6279]} Length = 174

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Nematode (Brugia malayi) [TaxId: 6279]

 Score = 85.6 bits (211), Expect = 1e-20
 Identities = 55/230 (23%), Positives = 85/230 (36%), Gaps = 69/230 (30%)

Query: 98  TKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGIS--------YRRKEFI 149
            +RVFLD++IDG  AGRIV+ LY D AP     F  L +G AG          Y+   F 
Sbjct: 3   RRRVFLDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFH 62

Query: 150 KIMPNYVQHGGVRSYGVDAELARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGIIVR 209
           +++ N++  GG  + G        +G       + ++ +   +                 
Sbjct: 63  RVIKNFMIQGGDFTKG------DGTGGESIYGGMFDDEEFVMKHDEPFVVSMAN------ 110

Query: 210 DPSKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEV 269
                                    G + NG++F I T  +P L+   +V G+V+ G EV
Sbjct: 111 ------------------------KGPNTNGSQFFITTTPAPHLNNIHVVFGKVVSGQEV 146

Query: 270 AEKIGEVKTVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNCG 319
             KI  +KT                            NRP + V++ NCG
Sbjct: 147 VTKIEYLKT-------------------------NSKNRPLADVVILNCG 171

>d1h0pa_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 5 [TaxId: 6239]} Length = 182

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Caenorhabditis elegans, isoform 5 [TaxId: 6239]

 Score = 84.9 bits (209), Expect = 2e-20
 Identities = 55/227 (24%), Positives = 86/227 (37%), Gaps = 63/227 (27%)

Query: 95  KDP--TKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIM 152
           K P  T RV+ D+ I GK  GRIVIGL+G + P  A  F  L     G  Y   +F +++
Sbjct: 1   KGPKVTDRVYFDMEIGGKPIGRIVIGLFGKTVPKTATNFIELAKKPKGEGYPGSKFHRVI 60

Query: 153 PNYVQHGGVRSYGVDAELARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPS 212
            +++  GG  + G         G ++  E+  +E         G  ++A           
Sbjct: 61  ADFMIQGGDFTRGDG-----TGGRSIYGEKFADENFKLKHYGAGWLSMA----------- 104

Query: 213 KPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEK 272
                                 G D NG++F I T  +P LD   +V G++LEGM+V  K
Sbjct: 105 --------------------NAGADTNGSQFFITTVKTPWLDGRHVVFGKILEGMDVVRK 144

Query: 273 IGEVKTVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNCG 319
           I + + +                           +RP   V++   G
Sbjct: 145 IEQTEKLPG-------------------------DRPKQDVIIAASG 166

>d2rmca_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Mouse (Mus musculus), variant C [TaxId: 10090]} Length = 182

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Mouse (Mus musculus), variant C [TaxId: 10090]

 Score = 84.5 bits (208), Expect = 3e-20
 Identities = 51/230 (22%), Positives = 81/230 (35%), Gaps = 63/230 (27%)

Query: 95  KDP--TKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIM 152
           + P  T +VF D+ I  K  GRIVIGL+G+  P     F +L +G  G  Y+   F +++
Sbjct: 2   RGPSVTDKVFFDVRIGDKDVGRIVIGLFGNVVPKTVENFVALATGEKGYGYKGSIFHRVI 61

Query: 153 PNYVQHGGVRSYGVDAELARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPS 212
            +++  GG  +           G ++  E   +E         G  ++A           
Sbjct: 62  KDFMIQGGDFTAR-----DGTGGMSIYGETFPDENFKLKHYGIGWVSMA----------- 105

Query: 213 KPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEK 272
                                 G D NG++F I       LD   +V G+VL+GM V   
Sbjct: 106 --------------------NAGPDTNGSQFFITLTKPTWLDGKHVVFGKVLDGMTVVHS 145

Query: 273 IGEVKTVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNCGLME 322
           I    T                          G +RP +   + N G ++
Sbjct: 146 IELQAT-------------------------DGHDRPLTDCTIVNSGKID 170

>d1qnga_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Plasmodium falciparum [TaxId: 5833]} Length = 170

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Plasmodium falciparum [TaxId: 5833]

 Score = 83.0 bits (204), Expect = 7e-20
 Identities = 44/220 (20%), Positives = 69/220 (31%), Gaps = 56/220 (25%)

Query: 100 RVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHG 159
           +VF DISID  +AGRI+  L+ D  P     F +L +G    S  +    K    +    
Sbjct: 5   KVFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHRIIP 64

Query: 160 GVRSYGVDAELARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIK 219
                G D      SG      R   +   N +      +  G + +             
Sbjct: 65  QFMCQGGDITNGNGSGGESIYGRSFTDENFNMK-----HDQPGLLSMA------------ 107

Query: 220 LVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKIGEVKTV 279
                          G + N ++F I     P LD   +V G+V+EGM V  ++ +    
Sbjct: 108 -------------NAGPNTNSSQFFITLVPCPWLDGKHVVFGKVIEGMNVVREMEKEGAK 154

Query: 280 QENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNCG 319
                                            V++T+CG
Sbjct: 155 S--------------------------GYVKRSVVITDCG 168

>d2igva1 b.62.1.1 (A:1-172) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 3 [TaxId: 6239]} Length = 172

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Caenorhabditis elegans, isoform 3 [TaxId: 6239]

 Score = 81.8 bits (201), Expect = 2e-19
 Identities = 47/225 (20%), Positives = 81/225 (36%), Gaps = 59/225 (26%)

Query: 100 RVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKE--FIKIMPNYVQ 157
           +VF DI+I GK++GRIV+ LY D  P  A  F +L +G  GI    K   F     + + 
Sbjct: 5   KVFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRII 64

Query: 158 HGGVRSYGVDAELARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPK 217
              +   G         G ++  E+  +E        PG  ++A                
Sbjct: 65  PNFMIQGGDFTRGNGTGGESIYGEKFPDENFKEKHTGPGVLSMANA-------------- 110

Query: 218 IKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKIGEVK 277
                            G + NG++F + T  +  LD   +V GRV+EG++V + +    
Sbjct: 111 -----------------GPNTNGSQFFLCTVKTEWLDGKHVVFGRVVEGLDVVKAVESNG 153

Query: 278 TVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNCGLME 322
           +                             +P    ++ +CG ++
Sbjct: 154 SQS--------------------------GKPVKDCMIADCGQLK 172

>d2z6wa1 b.62.1.1 (A:2-165) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.5 bits (195), Expect = 1e-18
 Identities = 46/222 (20%), Positives = 79/222 (35%), Gaps = 62/222 (27%)

Query: 100 RVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHG 159
            V+LD+  +GK  GR+V+ L  D  P  A  F +L +G  G  Y+   F +++P+++   
Sbjct: 4   LVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQA 63

Query: 160 GVRSYGVDAELARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIK 219
           G  +                                         G      S+ P +  
Sbjct: 64  GDFTNH------------------------------------NGTGGKSIYGSRFPDENF 87

Query: 220 LVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKIGEVKTV 279
            +   G   +     G + NG++F I T  +  LD   +V G V+EGM+V +KI    + 
Sbjct: 88  TLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEGMDVVKKIESFGSK 147

Query: 280 QENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNCGLM 321
                                       R   K+++T+CG +
Sbjct: 148 S--------------------------GRTSKKIVITDCGQL 163

>d2r99a1 b.62.1.1 (A:139-299) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]} Length = 161

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.0 bits (191), Expect = 4e-18
 Identities = 42/220 (19%), Positives = 73/220 (33%), Gaps = 62/220 (28%)

Query: 100 RVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHG 159
           +V++DI I  K AGRI + L  D  P  A  F  L +   G  ++   F +I+P ++  G
Sbjct: 3   QVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMCQG 62

Query: 160 GVRSYGVDAELARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIK 219
           G  +                T       K  ++     K+    +  +            
Sbjct: 63  GDFTNHNG------------TGGKSIYGKKFDDENFILKHTGPGLLSMANS--------- 101

Query: 220 LVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKIGEVKTV 279
                          G + NG++F +    +  LD   +V G V EG++V  +I    + 
Sbjct: 102 ---------------GPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSK 146

Query: 280 QENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNCG 319
                                       +P  KV++ +CG
Sbjct: 147 D--------------------------GKPKQKVIIADCG 160

>d1ihga2 b.62.1.1 (A:2-196) Cyclophilin 40 isomerase domain {Cow (Bos taurus) [TaxId: 9913]} Length = 195

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin 40 isomerase domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 77.2 bits (189), Expect = 2e-17
 Identities = 47/231 (20%), Positives = 81/231 (35%), Gaps = 70/231 (30%)

Query: 100 RVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAG--------ISYRRKEFIKI 151
           RVF D+ I G+  GRIV+ L+ D  P  A  F +L +G  G        + ++   F +I
Sbjct: 16  RVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRI 75

Query: 152 MPNYVQHGGVRSYGVDAELARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGIIVRDP 211
           +  ++  GG  S             N      +   K  +E      +  G + +     
Sbjct: 76  IKKFMIQGGDFSNQ-----------NGTGGESIYGEKFEDENFHYKHDKEGLLSMA---- 120

Query: 212 SKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAE 271
                                  G + NG++F I T  +P LD   +V G+V++GM VA+
Sbjct: 121 ---------------------NAGSNTNGSQFFITTVPTPHLDGKHVVFGQVIKGMGVAK 159

Query: 272 KIGEVKTVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNCGLME 322
            +  V+                              +P    ++  CG ++
Sbjct: 160 ILENVEVKG--------------------------EKPAKLCVIAECGELK 184

>d1qoia_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]} Length = 173

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]

 Score = 75.7 bits (185), Expect = 3e-17
 Identities = 48/232 (20%), Positives = 75/232 (32%), Gaps = 67/232 (28%)

Query: 94  NKDP-TKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSG-----TAGISYRRKE 147
           N  P    VF D+SI G+  GR+ I L+ D  P  A  F    +G        I Y+   
Sbjct: 1   NSSPVNPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGST 60

Query: 148 FIKIMPNYVQHGGVRSYGVDAELARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGII 207
           F +++ +++  GG    G    +A         E             PG  ++A +    
Sbjct: 61  FHRVIKDFMIQGGDFVNGDGTGVASIYRGPFADENFKLRH-----SAPGLLSMANS---- 111

Query: 208 VRDPSKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGM 267
                                      G   NG +F I       LD   +V G++++G+
Sbjct: 112 ---------------------------GPSTNGCQFFITCSKCDWLDGKHVVFGKIIDGL 144

Query: 268 EVAEKIGEVKTVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNCG 319
            V  KI  V T                            N+P   V+++ CG
Sbjct: 145 LVMRKIENVPTGPN-------------------------NKPKLPVVISQCG 171

>d2c3ba1 b.62.1.1 (A:1-171) Cyclophilin (eukaryotic) {Aspergillus fumigatus [TaxId: 5085]} Length = 171

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Aspergillus fumigatus [TaxId: 5085]

 Score = 74.1 bits (181), Expect = 1e-16
 Identities = 45/227 (19%), Positives = 74/227 (32%), Gaps = 67/227 (29%)

Query: 100 RVFLDIS-----IDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPN 154
           +VF D+            GRIV  L+    P  A  F  L    AG  YR   F +I+PN
Sbjct: 3   QVFFDVEYAPVGTAETKVGRIVFNLFDKDVPKTAKNFRELCKRPAGEGYRESTFHRIIPN 62

Query: 155 YVQHGGVRSYGVDAELARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKP 214
           ++  GG  + G         G ++  ++  +E  +      G  ++A             
Sbjct: 63  FMIQGGDFTRG-----NGTGGRSIYGDKFADENFSRKHDKKGILSMANA----------- 106

Query: 215 PPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLE--GMEVAEK 272
                               G + NG++F I T  +  LD   +V G V +     V ++
Sbjct: 107 --------------------GPNTNGSQFFITTAVTSWLDGKHVVFGEVADEKSYSVVKE 146

Query: 273 IGEVKTVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNCG 319
           I  + +                          G  R  ++  + NCG
Sbjct: 147 IEALGS------------------------SSGSVRSNTRPKIVNCG 169

>d1z81a1 b.62.1.1 (A:25-210) Cyclophilin (eukaryotic) {Plasmodium yoelii [TaxId: 5861]} Length = 186

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Plasmodium yoelii [TaxId: 5861]

 Score = 65.7 bits (159), Expect = 2e-13
 Identities = 34/222 (15%), Positives = 66/222 (29%), Gaps = 57/222 (25%)

Query: 100 RVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHG 159
            VF+DI++     G+    L+ +  P  +  F    +G   ++     +   + + V   
Sbjct: 18  VVFMDINLGNNFLGKFKFELFQNIVPKTSENFRQFCTGEYKVNNLPVGYKNTIFHRVIKE 77

Query: 160 GVRSYGVDAELARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIK 219
            +   G           ++  E+  +E         G  ++A                  
Sbjct: 78  FMIQGGDFINHNGSGSLSIYGEKFDDENFDIKHDKEGLLSMA------------------ 119

Query: 220 LVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEG--MEVAEKIGEVK 277
                          G + NG +F I TK    LD  ++V GR+++   + + +KI  V 
Sbjct: 120 -------------NSGPNTNGCQFFITTKKCEWLDGKNVVFGRIIDNDSLLLLKKIENVS 166

Query: 278 TVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNCG 319
                                         +P   + V  CG
Sbjct: 167 VTPYI------------------------YKPKIPINVVECG 184

>d1xwna1 b.62.1.1 (A:1-166) Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.3 bits (148), Expect = 4e-12
 Identities = 39/181 (21%), Positives = 70/181 (38%), Gaps = 44/181 (24%)

Query: 98  TKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQ 157
              V+L+ S+     G IV+ LY   AP     F+ L        Y   +F +I+ +++ 
Sbjct: 11  PPNVYLETSM-----GIIVLELYWKHAPKTCKNFAELARRG---YYNGTKFHRIIKDFMI 62

Query: 158 HGGVRSYGVDAELARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPK 217
            GG      D     R G+++  ++  +E    +     T   AG + +           
Sbjct: 63  QGG------DPTGTGRGGASIYGKQFEDE---LHPDLKFTG--AGILAM----------- 100

Query: 218 IKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKIGEVK 277
               A            G D NG++F +    +  LD    + GRV +G+ +  ++G V+
Sbjct: 101 ----ANA----------GPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVE 146

Query: 278 T 278
           T
Sbjct: 147 T 147

>d1w74a_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Mycobacterium tuberculosis [TaxId: 1773]} Length = 171

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 56.8 bits (136), Expect = 2e-10
 Identities = 40/182 (21%), Positives = 58/182 (31%), Gaps = 31/182 (17%)

Query: 111 SAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHGGVRSYGVDAEL 170
           + G I I L+G+ AP   A F  L  GT   S +        P Y    G   + V    
Sbjct: 11  NRGDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFY---DGAVFHRVIQGF 67

Query: 171 ARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQGKLEID 230
             + G    T R    +K  +E  P  +     +               L          
Sbjct: 68  MIQGGDPTGTGRGGPGYKFADEFHPELQFDKPYL---------------LAMAN------ 106

Query: 231 QEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVL--EGMEVAEKIGEVKTVQENTGSPYF 288
               G   NG++F I    +P L+    + G V+  E   V E I +  T  +    P  
Sbjct: 107 ---AGPGTNGSQFFITVGKTPHLNRRHTIFGEVIDAESQRVVEAISKTAT--DGNDRPTD 161

Query: 289 RV 290
            V
Sbjct: 162 PV 163

>d2ok3a1 b.62.1.1 (A:1-159) Cyclophilin-like protein PPIL3B {Human (Homo sapiens) [TaxId: 9606]} Length = 159

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like protein PPIL3B
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.4 bits (135), Expect = 2e-10
 Identities = 37/181 (20%), Positives = 63/181 (34%), Gaps = 42/181 (23%)

Query: 111 SAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHGGVRSYGVDAEL 170
             G I I ++ +  P     F +L    A   Y    F + +  ++   G      D   
Sbjct: 8   DVGDIKIEVFCERTPKTCENFLALC---ASNYYNGCIFHRNIKGFMVQTG------DPTG 58

Query: 171 ARRSGSNLETERLMEEWKANNERCPGTK-NLAGTVGIIVRDPSKPPPKIKLVARQGKLEI 229
             R G++      +   K  +E     K N+ G V                +A       
Sbjct: 59  TGRGGNS------IWGKKFEDEYSEYLKHNVRGVVS---------------MANN----- 92

Query: 230 DQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKIGEVKTVQENTGSPYFR 289
                G + NG++F I     P LD    V G+V++G+E  +++ ++    E T  P   
Sbjct: 93  -----GPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKLPV-NEKTYRPLND 146

Query: 290 V 290
           V
Sbjct: 147 V 147

>d1zkca1 b.62.1.1 (A:280-457) Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain {Human (Homo sapiens) [TaxId: 9606]} Length = 178

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.7 bits (136), Expect = 2e-10
 Identities = 28/173 (16%), Positives = 50/173 (28%), Gaps = 41/173 (23%)

Query: 111 SAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHGGVRSYGVDAEL 170
           + G + + L+ D  P     F  L        Y    F + + N+V  GG          
Sbjct: 8   NKGDLNLELHCDLTPKTCENFIRLCKKH---YYDGTIFHRSIRNFVIQGG---------- 54

Query: 171 ARRSGSNLETERLMEEWKANNERCPGTKNL-AGTVGIIVRDPSKPPPKIKLVARQGKLEI 229
                               +E  P   +   G + +               A       
Sbjct: 55  --DPTGTGTGGESYWGKPFKDEFRPNLSHTGRGILSM---------------ANS----- 92

Query: 230 DQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKIGEVKTVQEN 282
                G + N ++F I  +    LD    + GRV+ G +V   +  V++  + 
Sbjct: 93  -----GPNSNRSQFFITFRSCAYLDKKHTIFGRVVGGFDVLTAMENVESDPKT 140

>d2b71a1 b.62.1.1 (A:23-191) Cyclophilin-like protein PY00693 {Plasmodium yoelii [TaxId: 5861]} Length = 169

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like protein PY00693
species: Plasmodium yoelii [TaxId: 5861]

 Score = 56.0 bits (134), Expect = 3e-10
 Identities = 33/188 (17%), Positives = 58/188 (30%), Gaps = 42/188 (22%)

Query: 95  KDPTKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPN 154
           K  T+R ++ I     + G   + LY   +P     F +L        Y    F +++PN
Sbjct: 11  KGHTERGYITIYT---NLGDFEVELYWYHSPKTCLNFYTLCEMG---FYDNTIFHRVIPN 64

Query: 155 YVQHGGVRSYGVDAELARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKP 214
           +V  G                   +  + +      +E     K+    +  +  +    
Sbjct: 65  FVIQG------------GDPTGTGKGGKSIYGEYFEDEINKELKHTGAGILSMSNN---- 108

Query: 215 PPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKIG 274
                               G + N ++F I     P LD    +  RV + M   E I 
Sbjct: 109 --------------------GPNTNSSQFFITLAPLPHLDGKHTIFARVSKNMTCIENIA 148

Query: 275 EVKTVQEN 282
            V+T   N
Sbjct: 149 SVQTTATN 156

>d2a2na1 b.62.1.1 (A:483-646) Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.5 bits (122), Expect = 1e-08
 Identities = 31/183 (16%), Positives = 53/183 (28%), Gaps = 39/183 (21%)

Query: 100 RVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHG 159
           +   D +I   S G I   L+    P     F      +    Y    F +I+  ++   
Sbjct: 6   KRVSDSAIIHTSMGDIHTKLFPVECPKTVENF---CVHSRNGYYNGHTFHRIIKGFMIQT 62

Query: 160 GVRSYGVDAELARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIK 219
                                   +   +  +E     ++       +            
Sbjct: 63  ------------GDPTGTGMGGESIWGGEFEDEFHSTLRHDRPYTLSMANA--------- 101

Query: 220 LVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKIGEVKTV 279
                          G + NG++F I    +P LD    V GRV +GMEV ++I  VK  
Sbjct: 102 ---------------GSNTNGSQFFITVVPTPWLDNKHTVFGRVTKGMEVVQRISNVKVN 146

Query: 280 QEN 282
            + 
Sbjct: 147 PKT 149

>d2fu0a1 b.62.1.1 (A:5-159) Putative cyclophilin PFE0505w {Plasmodium falciparum [TaxId: 5833]} Length = 155

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Putative cyclophilin PFE0505w
species: Plasmodium falciparum [TaxId: 5833]

 Score = 48.0 bits (113), Expect = 1e-07
 Identities = 28/168 (16%), Positives = 45/168 (26%), Gaps = 39/168 (23%)

Query: 111 SAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHGGVRSYGVDAEL 170
           + G I I L+          FS         +      IK              G     
Sbjct: 9   TMGDIHISLFYKECKKTVQNFSVHSINGYYNNCIFHRVIKHFMVQTGDPSGDGTG----- 63

Query: 171 ARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQGKLEID 230
                                E   G             +  +      L   +  + + 
Sbjct: 64  --------------------GESIWG-------------NEFEDEFFDHLNHSKPFM-VS 89

Query: 231 QEEVGKDPNGTEFVIVTKDSPELDASSLVVGRVLEGMEVAEKIGEVKT 278
               G + NG++F I T   P LD    V G+V +G ++   I +V+T
Sbjct: 90  MANCGPNTNGSQFFITTVPCPWLDFKHTVFGKVTQGSKIVLDIEKVRT 137

>d1v9ta_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]} Length = 166

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Escherichia coli [TaxId: 562]

 Score = 47.3 bits (111), Expect = 3e-07
 Identities = 46/234 (19%), Positives = 73/234 (31%), Gaps = 74/234 (31%)

Query: 93  ANKDPTKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIM 152
           A  DP   V L  S     AG I + L    AP     F   V+      Y    F +++
Sbjct: 1   AKGDP--HVLLTTS-----AGNIELELDKQKAPVSVQNFVDYVNSG---FYNNTTFHRVI 50

Query: 153 PNYVQHGGVRSYGVDAELARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPS 212
           P ++  G               G   + ++        NE   G +N  GT+ +      
Sbjct: 51  PGFMIQG--------------GGFTEQMQQKKPNPPIKNEADNGLRNTRGTIAMARTAD- 95

Query: 213 KPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASS-----LVVGRVLEGM 267
                                  KD   ++F I   D+  LD         V G+V++GM
Sbjct: 96  -----------------------KDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGM 132

Query: 268 EVAEKIGEVKTVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNCGLM 321
           +VA+KI +V T                            N P   V++ +  ++
Sbjct: 133 DVADKISQVPTHDVGPYQ---------------------NVPSKPVVILSATVL 165

>d1lopa_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]} Length = 164

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Escherichia coli [TaxId: 562]

 Score = 39.9 bits (92), Expect = 9e-05
 Identities = 31/176 (17%), Positives = 49/176 (27%), Gaps = 49/176 (27%)

Query: 111 SAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHGGVRSYGVDAEL 170
           + G IVI  + D AP     F           Y    F +++  ++  GG    G     
Sbjct: 7   NHGDIVIKTFDDKAPETVKNFLDYCREG---FYNNTIFHRVINGFMIQGGGFEPG----- 58

Query: 171 ARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQGKLEID 230
                     ++   +    NE   G KN  GT+ +                        
Sbjct: 59  ---------MKQKATKEPIKNEANNGLKNTRGTLAMARTQ-------------------- 89

Query: 231 QEEVGKDPNGTEFVIVTKDS--------PELDASSLVVGRVLEGMEVAEKIGEVKT 278
                      +F I   D+                V   V++GM+  +KI  V T
Sbjct: 90  ----APHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVDGMDEVDKIKGVAT 141

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	322
d2z6wa1	164	Mitochondrial peptidyl-prolyl cis-trans isomerase,	100.0
d2igva1	172	Cyclophilin (eukaryotic) {Caenorhabditis elegans,	100.0
d1xo7a_	166	Cyclophilin (eukaryotic) {Trypanosoma cruzi [TaxId	100.0
d2r99a1	161	Mitochondrial peptidyl-prolyl cis-trans isomerase,	100.0
d2rmca_	182	Cyclophilin (eukaryotic) {Mouse (Mus musculus), va	100.0
d1h0pa_	182	Cyclophilin (eukaryotic) {Caenorhabditis elegans,	100.0
d1qoia_	173	Cyclophilin (eukaryotic) {Human (Homo sapiens), U4	100.0
d2cfea1	162	Cyclophilin-like allergen Mal s 6 {Malassezia symp	100.0
d1qnga_	170	Cyclophilin (eukaryotic) {Plasmodium falciparum [T	100.0
d1ihga2	195	Cyclophilin 40 isomerase domain {Cow (Bos taurus)	100.0
d1a33a_	174	Cyclophilin (eukaryotic) {Nematode (Brugia malayi)	100.0
d1z81a1	186	Cyclophilin (eukaryotic) {Plasmodium yoelii [TaxId	100.0
d2c3ba1	171	Cyclophilin (eukaryotic) {Aspergillus fumigatus [T	100.0
d2ok3a1	159	Cyclophilin-like protein PPIL3B {Human (Homo sapie	100.0
d1v9ta_	166	Peptidyl-prolyl cis-trans isomerase A, PpiA {Esche	100.0
d2fu0a1	155	Putative cyclophilin PFE0505w {Plasmodium falcipar	100.0
d1xwna1	166	Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1	100.0
d1zkca1	178	Peptidyl-prolyl cis-trans isomerase-like 2, Cyclop	100.0
d2b71a1	169	Cyclophilin-like protein PY00693 {Plasmodium yoeli	100.0
d2a2na1	164	Peptidylprolyl isomerase domain and WD repeat-cont	100.0
d1w74a_	171	Peptidyl-prolyl cis-trans isomerase A, PpiA {Mycob	100.0
d1lopa_	164	Peptidyl-prolyl cis-trans isomerase A, PpiA {Esche	100.0

>d2z6wa1 b.62.1.1 (A:2-165) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.3e-44  Score=307.66  Aligned_cols=162  Identities=28%  Similarity=0.553  Sum_probs=136.1

Q ss_pred             CceEEEEEEeCCeeeeeEEEEecCCCCChhHHHHHHHhcCCCcccccCcEEEEeccCeeEeeCccccCcccccccCCCC-
Q 020718           98 TKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHGGVRSYGVDAELARRSGS-  176 (322)
Q Consensus        98 ~~~v~~di~i~g~~~GrIvIeL~~d~aP~tv~nF~~L~~~~~g~~Y~g~~f~Rvi~gfviQgGd~~~~~~~~~~~g~gg-  176 (322)
                      +++|||||+|+++++|+|+||||.+.||+||+||++||+++++.+|+|+.|||++++|++|+||....      ++.++ 
T Consensus         2 n~~v~~Di~i~~~~~G~i~ieL~~~~aP~tv~nF~~l~~~~~~~~Y~g~~f~rv~~~~~iq~g~~~~~------~~~~~~   75 (164)
T d2z6wa1           2 NPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNH------NGTGGK   75 (164)
T ss_dssp             CCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCCSTTCBEEEEETTTEEEECCTTTS------SSSCCC
T ss_pred             CCeEEEEEEECCEeceEEEEEECCCcCcHHHHHHHHHHhcCCCcccCCcEEEEecccceEecCCccCC------CCCCCc
Confidence            57999999999999999999999999999999999999988777899999999999999999998643      23333 


Q ss_pred             CCccccchhhhccCCCCCCCCCCCCCceeeeecCCCCCCcchhhhhccCcceeeccccCCCCCcceEEEEcCCCCCCCCC
Q 020718          177 NLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDAS  256 (322)
Q Consensus       177 ~~~~~~~~~E~~~~~~~~~g~~~~~G~v~m~v~~~~~~~~~~~l~ar~G~l~m~~an~~p~s~gSqFfItl~~~p~LDg~  256 (322)
                      ..++..++++.      ....++.+|+|+|                         ++.++++++|||||++.+.++||++
T Consensus        76 ~~~~~~~~~~~------~~~~~~~~G~lsm-------------------------a~~~~~s~~sqFfi~~~~~~~ldg~  124 (164)
T d2z6wa1          76 SIYGSRFPDEN------FTLKHVGPGVLSM-------------------------ANAGPNTNGSQFFICTIKTDWLDGK  124 (164)
T ss_dssp             BTTBSCBCCCC------CCSCCCSTTEEEE-------------------------CCSSTTCBCSCEEEESSCCGGGTTT
T ss_pred             cccCCcCCccc------cccccCCccEEEE-------------------------ecCCCCCCCcceeccccCCCccccc
Confidence            22333332221      1123455666666                         4567999999999999999999999


Q ss_pred             CcEEEEEEcCHHHHHHHhcCccccCCCCCCcchhhhhccccchhhcccCCCCCCccEEEeeeeecC
Q 020718          257 SLVVGRVLEGMEVAEKIGEVKTVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNCGLME  322 (322)
Q Consensus       257 ~~VFGrVi~Gmdvl~~I~~~~t~~~~~~~~~~~~~~~~gd~~~~~a~~~~~~P~~~V~I~~cG~l~  322 (322)
                      |+|||||++|||+|++|++++++.                          ++|.++|+|++||+|.
T Consensus       125 ytVFG~Vv~G~dvl~~I~~~~~~~--------------------------~~P~~~i~I~~cG~l~  164 (164)
T d2z6wa1         125 HVVFGHVIEGMDVVKKIESFGSKS--------------------------GRTSKKIVITDCGQLS  164 (164)
T ss_dssp             SCEEEEEEECHHHHHHHHHTCCTT--------------------------SCCSSCEEEEEEEECC
T ss_pred             ceEEEEecccHHHHHHHHhCCCCC--------------------------CCCCCCEEEEeCeecC
Confidence            999999999999999999999865                          7999999999999983

>d2igva1 b.62.1.1 (A:1-172) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 3 [TaxId: 6239]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Caenorhabditis elegans, isoform 3 [TaxId: 6239]

Probab=100.00  E-value=5.6e-44  Score=310.63  Aligned_cols=162  Identities=29%  Similarity=0.619  Sum_probs=136.2

Q ss_pred             CceEEEEEEeCCeeeeeEEEEecCCCCChhHHHHHHHhcCCC-------cccccCcEEEEeccCeeEeeCccccCccccc
Q 020718           98 TKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTA-------GISYRRKEFIKIMPNYVQHGGVRSYGVDAEL  170 (322)
Q Consensus        98 ~~~v~~di~i~g~~~GrIvIeL~~d~aP~tv~nF~~L~~~~~-------g~~Y~g~~f~Rvi~gfviQgGd~~~~~~~~~  170 (322)
                      +++|||||+|+++++|+|+||||.+.||+||+||++||++..       ..+|+|+.|||+++++++|+||...+     
T Consensus         3 ~~~v~~Di~i~~~~~G~i~ieL~~~~aP~tv~nF~~L~~~~~~~~~~~k~~~y~~~~f~rv~~~~~i~~G~~~~~-----   77 (172)
T d2igva1           3 RSKVFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRIIPNFMIQGGDFTRG-----   77 (172)
T ss_dssp             CCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTCBCTTSSBSCCTTCBCCEEETTTEEEECCTTTS-----
T ss_pred             CCEEEEEEEECCEeccEEEEEEcCCCCcHHHHHHHHHHhccccccccCcccccCCcceeEEEecceEEcCCccCC-----
Confidence            678999999999999999999999999999999999998642       23899999999999999999998654     


Q ss_pred             ccCCCC-CCccccchhhhccCCCCCCCCCCCCCceeeeecCCCCCCcchhhhhccCcceeeccccCCCCCcceEEEEcCC
Q 020718          171 ARRSGS-NLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKD  249 (322)
Q Consensus       171 ~~g~gg-~~~~~~~~~E~~~~~~~~~g~~~~~G~v~m~v~~~~~~~~~~~l~ar~G~l~m~~an~~p~s~gSqFfItl~~  249 (322)
                       ++.++ ..+++.+++|..      ...++.+|+|+|                         ++.++++++|||||++++
T Consensus        78 -~~~~~~~~~~~~~~~e~~------~~~~~~~G~lsm-------------------------a~~~~~~~~sqFfIt~~~  125 (172)
T d2igva1          78 -NGTGGESIYGEKFPDENF------KEKHTGPGVLSM-------------------------ANAGPNTNGSQFFLCTVK  125 (172)
T ss_dssp             -SSSCCCBTTBSCBCCCCC------CSCCCSTTEEEE-------------------------CCSSTTCBSSCEEEESSC
T ss_pred             -CCCCCcccCCCccCcccc------ccccCCCcEEEE-------------------------eecCCCCcCceeEeeecC
Confidence             34443 334444444432      123556677666                         346789999999999999


Q ss_pred             CCCCCCCCcEEEEEEcCHHHHHHHhcCccccCCCCCCcchhhhhccccchhhcccCCCCCCccEEEeeeeecC
Q 020718          250 SPELDASSLVVGRVLEGMEVAEKIGEVKTVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNCGLME  322 (322)
Q Consensus       250 ~p~LDg~~~VFGrVi~Gmdvl~~I~~~~t~~~~~~~~~~~~~~~~gd~~~~~a~~~~~~P~~~V~I~~cG~l~  322 (322)
                      .++||++|+|||||++|||||++|+..+++.                          ++|+++|+|++||+||
T Consensus       126 ~~~ld~~~~vFG~Vv~Gmdvl~~I~~~~~~~--------------------------g~P~~~i~I~~cG~l~  172 (172)
T d2igva1         126 TEWLDGKHVVFGRVVEGLDVVKAVESNGSQS--------------------------GKPVKDCMIADCGQLK  172 (172)
T ss_dssp             CGGGTTTSCEEEEEEECHHHHHHHHTTCCTT--------------------------SCCSSCEEEEEEEEEC
T ss_pred             CcccCCceeEEEEEeccHHHHHHHHcCCCCC--------------------------CCCCCCeEEEeccccC
Confidence            9999999999999999999999999988754                          7999999999999997

>d1xo7a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Trypanosoma cruzi [TaxId: 5693]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=100.00  E-value=1e-43  Score=307.23  Aligned_cols=164  Identities=31%  Similarity=0.627  Sum_probs=138.2

Q ss_pred             CCCCceEEEEEEeCCeeeeeEEEEecCCCCChhHHHHHHHhcCCCcccccCcEEEEeccCeeEeeCccccCcccccccCC
Q 020718           95 KDPTKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHGGVRSYGVDAELARRS  174 (322)
Q Consensus        95 ~~~~~~v~~di~i~g~~~GrIvIeL~~d~aP~tv~nF~~L~~~~~g~~Y~g~~f~Rvi~gfviQgGd~~~~~~~~~~~g~  174 (322)
                      +.++++|||||+|++++.|+|+||||.+.||+||+||++||+++.+.+|+|+.|||+++++++|+|+....      ++.
T Consensus         2 p~~t~~V~~di~i~~~~~G~i~ieL~~~~aP~t~~nF~~l~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~------~~~   75 (166)
T d1xo7a_           2 PVVTDKVYFDITIGDEPVGRVVIGLFGNDVPKTVENFKQLASGENGFGYKGSIFHRVIRNFMIQGGDFTNF------DGT   75 (166)
T ss_dssp             CCCCEEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCCSTTCBEEEEETTTEEEECCTTTS------SSS
T ss_pred             CCCCCeEEEEEEECCEECcEEEEEECCCCChHHHHHHHHhhcccccccccCcEEEEEcCCCEEEeCCCCCC------CCC
Confidence            45689999999999999999999999999999999999999999655699999999999999999998653      333


Q ss_pred             CC-CCccccchhhhccCCCCCCCCCCCCCceeeeecCCCCCCcchhhhhccCcceeeccccCCCCCcceEEEEcCCCCCC
Q 020718          175 GS-NLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPEL  253 (322)
Q Consensus       175 gg-~~~~~~~~~E~~~~~~~~~g~~~~~G~v~m~v~~~~~~~~~~~l~ar~G~l~m~~an~~p~s~gSqFfItl~~~p~L  253 (322)
                      ++ ..++..+.++       ....++.+|+|+|                         ++.++++++|||||+++++++|
T Consensus        76 ~~~~~~~~~~~~~-------~~~~~~~~G~l~~-------------------------a~~g~~s~~sqFfIt~~~~~~l  123 (166)
T d1xo7a_          76 GGKSIYGTRFDDE-------NLKIKHFVGAVSM-------------------------ANAGPNSNGSQFFVTTAPTPWL  123 (166)
T ss_dssp             CCCBTTBSCBCCC-------CCCSCCCTTEEEE-------------------------CCSSTTCBCSCEEEESSCCGGG
T ss_pred             CCCCCCCcccccc-------cccccccccceee-------------------------cccCCCCCCCeeEEccCCcccc
Confidence            33 1111222211       1123556666666                         4567999999999999999999


Q ss_pred             CCCCcEEEEEEcCHHHHHHHhcCccccCCCCCCcchhhhhccccchhhcccCCCCCCccEEEeeeeec
Q 020718          254 DASSLVVGRVLEGMEVAEKIGEVKTVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNCGLM  321 (322)
Q Consensus       254 Dg~~~VFGrVi~Gmdvl~~I~~~~t~~~~~~~~~~~~~~~~gd~~~~~a~~~~~~P~~~V~I~~cG~l  321 (322)
                      |++|+|||||++|||+|++|++++++.+                         ++|.++|+|++||+|
T Consensus       124 d~~~~vfG~Vi~G~~vl~~I~~~~~~~~-------------------------~~P~~~i~I~~cgvl  166 (166)
T d1xo7a_         124 DGRHVVFGKVVEGMDVVKKVENTKTGLN-------------------------DKPKKAVKINDCGVL  166 (166)
T ss_dssp             TTTSCEEEEEEECHHHHHHHHTSCBCGG-------------------------GCBSSCEEEEEEEEC
T ss_pred             CccceeeeEEeeHHHHHHHHHcCCCCCC-------------------------CCCCCCEEEEeeEeC
Confidence            9999999999999999999999999876                         899999999999997

>d2r99a1 b.62.1.1 (A:139-299) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.1e-43  Score=303.11  Aligned_cols=160  Identities=26%  Similarity=0.503  Sum_probs=131.6

Q ss_pred             CceEEEEEEeCCeeeeeEEEEecCCCCChhHHHHHHHhcCCCcccccCcEEEEeccCeeEeeCccccCcccccccCCCC-
Q 020718           98 TKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHGGVRSYGVDAELARRSGS-  176 (322)
Q Consensus        98 ~~~v~~di~i~g~~~GrIvIeL~~d~aP~tv~nF~~L~~~~~g~~Y~g~~f~Rvi~gfviQgGd~~~~~~~~~~~g~gg-  176 (322)
                      +++|||||+|+++++|+|+||||.+.||+||+||++||+..++.+|+|+.|||++++|++|+||....      .+.++ 
T Consensus         1 np~vy~di~i~~~~~G~i~ieL~~~~aP~tv~nF~~L~~~~~~~~Y~g~~f~Rv~~~~~iq~G~~~~~------~~~~~~   74 (161)
T d2r99a1           1 NPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMCQGGDFTNH------NGTGGK   74 (161)
T ss_dssp             CCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCCSTTCBEEEEETTTEEEECCTTTS------SSSCCC
T ss_pred             CCEEEEEEEECCEeceEEEEEEcCCCCcHHHHHHHHhhhhccccccCCcEEEEEEEeeeEEeeeccCC------CCCCCc
Confidence            46899999999999999999999999999999999999876656899999999999999999998643      22332 


Q ss_pred             CCccccchhhhccCCCCCCCCCCCCCceeeeecCCCCCCcchhhhhccCcceeeccccCCCCCcceEEEEcCCCCCCCCC
Q 020718          177 NLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDAS  256 (322)
Q Consensus       177 ~~~~~~~~~E~~~~~~~~~g~~~~~G~v~m~v~~~~~~~~~~~l~ar~G~l~m~~an~~p~s~gSqFfItl~~~p~LDg~  256 (322)
                      ..++..+.++..      ...++.+|+++|                         ++.++++++|||||++++.++||++
T Consensus        75 ~~~~~~~~~~~~------~~~~~~~G~ls~-------------------------~~~~~~s~~sqFfI~~~~~~~Ldg~  123 (161)
T d2r99a1          75 SIYGKKFDDENF------ILKHTGPGLLSM-------------------------ANSGPNTNGSQFFLTCDKTDWLDGK  123 (161)
T ss_dssp             BTTBSCBCCCCC------CSCCCSSSEEEE-------------------------CCSSTTCBCSCEEEESSCCGGGTTT
T ss_pred             cccCcccccccc------ccccccceeeee-------------------------cccCCCCcCcceEeccCCccccCCc
Confidence            222222222211      122455666665                         4567999999999999999999999


Q ss_pred             CcEEEEEEcCHHHHHHHhcCccccCCCCCCcchhhhhccccchhhcccCCCCCCccEEEeeeee
Q 020718          257 SLVVGRVLEGMEVAEKIGEVKTVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNCGL  320 (322)
Q Consensus       257 ~~VFGrVi~Gmdvl~~I~~~~t~~~~~~~~~~~~~~~~gd~~~~~a~~~~~~P~~~V~I~~cG~  320 (322)
                      |+|||||++|||||++|+..++..                          ++|+++|+|++||+
T Consensus       124 ~tvFG~Vv~G~dvl~~I~~~~~~~--------------------------~~P~~~i~I~~CGe  161 (161)
T d2r99a1         124 HVVFGEVTEGLDVLRQIEAQGSKD--------------------------GKPKQKVIIADCGE  161 (161)
T ss_dssp             SCEEEEEEECHHHHHHHHTTCCTT--------------------------CCCSSCEEEEEEEE
T ss_pred             ceEEEEEeehHHHHHHHHccCCCC--------------------------CcCCCCEEEEeCCC
Confidence            999999999999999999876643                          79999999999996

>d2rmca_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Mouse (Mus musculus), variant C [TaxId: 10090]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Mouse (Mus musculus), variant C [TaxId: 10090]

Probab=100.00  E-value=2.1e-43  Score=309.78  Aligned_cols=167  Identities=29%  Similarity=0.522  Sum_probs=140.8

Q ss_pred             CCCCCceEEEEEEeCCeeeeeEEEEecCCCCChhHHHHHHHhcCCCcccccCcEEEEeccCeeEeeCccccCcccccccC
Q 020718           94 NKDPTKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHGGVRSYGVDAELARR  173 (322)
Q Consensus        94 ~~~~~~~v~~di~i~g~~~GrIvIeL~~d~aP~tv~nF~~L~~~~~g~~Y~g~~f~Rvi~gfviQgGd~~~~~~~~~~~g  173 (322)
                      .+.++.+|||||+|+++++|+|+||||.+.||+||+||++||+++++.+|+|+.|||+++++++|+|+...+      ++
T Consensus         3 ~p~~t~~vy~di~i~~~~~G~ivieL~~d~aP~tv~nF~~l~~~~k~~~Y~g~~f~rv~~~~~iq~G~~~~~------~~   76 (182)
T d2rmca_           3 GPSVTDKVFFDVRIGDKDVGRIVIGLFGNVVPKTVENFVALATGEKGYGYKGSIFHRVIKDFMIQGGDFTAR------DG   76 (182)
T ss_dssp             SCEEEEEEEEEEEETTEEEEEEEEEECTTTSHHHHHHHHHHHHTTTSCSSTTCBEEEEETTTEEEECCCSSS------SS
T ss_pred             CCccCCeEEEEEEECCEECcEEEEEEcCCCCcHHHHHHHHhhhcCCCccccCceeeeeecCceEEcCCCCCC------CC
Confidence            355689999999999999999999999999999999999999888766899999999999999999997643      33


Q ss_pred             CCC-CCccccchhhhccCCCCCCCCCCCCCceeeeecCCCCCCcchhhhhccCcceeeccccCCCCCcceEEEEcCCCCC
Q 020718          174 SGS-NLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPE  252 (322)
Q Consensus       174 ~gg-~~~~~~~~~E~~~~~~~~~g~~~~~G~v~m~v~~~~~~~~~~~l~ar~G~l~m~~an~~p~s~gSqFfItl~~~p~  252 (322)
                      .++ ..+++.++++..      ...++.+|+|+|                         ++.++++++|||||++++.++
T Consensus        77 ~~~~~~~~~~~~~~~~------~~~~~~~G~lsm-------------------------a~~~~~s~~sqFfI~~~~~~~  125 (182)
T d2rmca_          77 TGGMSIYGETFPDENF------KLKHYGIGWVSM-------------------------ANAGPDTNGSQFFITLTKPTW  125 (182)
T ss_dssp             SCCCBTTBSCBCCCCC------CSCCCSTTEEEE-------------------------CCSSTTCBCSCEEEESSCCGG
T ss_pred             CCCCCCcCCccccccc------ccccCCCccEeh-------------------------hhcCCCccCccccccccCCch
Confidence            333 333333333321      123556666666                         456789999999999999999


Q ss_pred             CCCCCcEEEEEEcCHHHHHHHhcCccccCCCCCCcchhhhhccccchhhcccCCCCCCccEEEeeeeecC
Q 020718          253 LDASSLVVGRVLEGMEVAEKIGEVKTVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNCGLME  322 (322)
Q Consensus       253 LDg~~~VFGrVi~Gmdvl~~I~~~~t~~~~~~~~~~~~~~~~gd~~~~~a~~~~~~P~~~V~I~~cG~l~  322 (322)
                      ||++|+|||||++|||+|++|++++++.+                         ++|.++|+|.+||+|+
T Consensus       126 ld~~~~vFG~Vi~G~dvl~~I~~~~~~~~-------------------------~~P~~~v~I~~~g~l~  170 (182)
T d2rmca_         126 LDGKHVVFGKVLDGMTVVHSIELQATDGH-------------------------DRPLTDCTIVNSGKID  170 (182)
T ss_dssp             GTTTSCEEEEEEECHHHHHHHHTSCBCTT-------------------------SCBSSCEEEEEEEEEE
T ss_pred             hcccceEEEEEechHHHHHHHHhCCcCCC-------------------------CcCCCCeEEEEeeEEe
Confidence            99999999999999999999999999886                         8999999999999984

>d1h0pa_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 5 [TaxId: 6239]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Caenorhabditis elegans, isoform 5 [TaxId: 6239]

Probab=100.00  E-value=1.3e-43  Score=311.00  Aligned_cols=166  Identities=32%  Similarity=0.597  Sum_probs=140.5

Q ss_pred             CCCCceEEEEEEeCCeeeeeEEEEecCCCCChhHHHHHHHhcCCCcccccCcEEEEeccCeeEeeCccccCcccccccCC
Q 020718           95 KDPTKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHGGVRSYGVDAELARRS  174 (322)
Q Consensus        95 ~~~~~~v~~di~i~g~~~GrIvIeL~~d~aP~tv~nF~~L~~~~~g~~Y~g~~f~Rvi~gfviQgGd~~~~~~~~~~~g~  174 (322)
                      +.++.+|||||+|+++++|+|+||||.+.||+||+||++||+++++.+|+|+.|||++++|++|+||...+      ++.
T Consensus         3 p~~t~~vy~di~i~~~~~G~i~IeL~~d~aP~tv~nF~~l~~~g~~~~y~g~~f~rv~~~~~iq~G~~~~~------~~~   76 (182)
T d1h0pa_           3 PKVTDRVYFDMEIGGKPIGRIVIGLFGKTVPKTATNFIELAKKPKGEGYPGSKFHRVIADFMIQGGDFTRG------DGT   76 (182)
T ss_dssp             CEEEEEEEEEEEETTEEEEEEEEEECTTTSHHHHHHHHHHHHSCTTTSSTTCBCCEEETTTEEEECCTTTS------SSS
T ss_pred             CCCCCeEEEEEEECCEECeEEEEEECCCCChHHHHHHHHHHHhcccCCcCCceEEEEEecceEEcCCCCCC------CCC
Confidence            34688999999999999999999999999999999999999887777899999999999999999998754      344


Q ss_pred             CC-CCccccchhhhccCCCCCCCCCCCCCceeeeecCCCCCCcchhhhhccCcceeeccccCCCCCcceEEEEcCCCCCC
Q 020718          175 GS-NLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPEL  253 (322)
Q Consensus       175 gg-~~~~~~~~~E~~~~~~~~~g~~~~~G~v~m~v~~~~~~~~~~~l~ar~G~l~m~~an~~p~s~gSqFfItl~~~p~L  253 (322)
                      ++ ..++..+.++..      ...++.+|+++|                         ++.++++++|||||++++.++|
T Consensus        77 g~~~~~~~~~~~~~~------~~~~~~~G~~~~-------------------------a~~g~~s~~sqFfIt~~~~~~l  125 (182)
T d1h0pa_          77 GGRSIYGEKFADENF------KLKHYGAGWLSM-------------------------ANAGADTNGSQFFITTVKTPWL  125 (182)
T ss_dssp             CCCBTTBSCBCCCCC------CSCCCSTTEEEE-------------------------CCSSTTCBCSCEEEESSCCGGG
T ss_pred             CCCCCCCCccCcccc------cccccCCceeee-------------------------cccCCCCcCccccccccccccc
Confidence            43 333333333221      223556666666                         4567999999999999999999


Q ss_pred             CCCCcEEEEEEcCHHHHHHHhcCccccCCCCCCcchhhhhccccchhhcccCCCCCCccEEEeeeeecC
Q 020718          254 DASSLVVGRVLEGMEVAEKIGEVKTVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNCGLME  322 (322)
Q Consensus       254 Dg~~~VFGrVi~Gmdvl~~I~~~~t~~~~~~~~~~~~~~~~gd~~~~~a~~~~~~P~~~V~I~~cG~l~  322 (322)
                      |++|+|||||++|||+|++|++++++.+                         ++|.++|+|++||+|+
T Consensus       126 dg~ytvFG~Vi~G~dvl~~I~~~~~~~~-------------------------~~P~~~v~I~~cG~l~  169 (182)
T d1h0pa_         126 DGRHVVFGKILEGMDVVRKIEQTEKLPG-------------------------DRPKQDVIIAASGHIA  169 (182)
T ss_dssp             TTTSCEEEEEEECHHHHHHHHTSCEETT-------------------------TEESSCEEEEEEEEEE
T ss_pred             cccceeEEEEeehHHHHHHHHhcCCCCC-------------------------CCCCCCEEEEECCeEe
Confidence            9999999999999999999999999886                         7999999999999974

>d1qoia_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]

Probab=100.00  E-value=1.2e-42  Score=301.95  Aligned_cols=164  Identities=27%  Similarity=0.521  Sum_probs=133.4

Q ss_pred             CCceEEEEEEeCCeeeeeEEEEecCCCCChhHHHHHHHhcCCC-----cccccCcEEEEeccCeeEeeCccccCcccccc
Q 020718           97 PTKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTA-----GISYRRKEFIKIMPNYVQHGGVRSYGVDAELA  171 (322)
Q Consensus        97 ~~~~v~~di~i~g~~~GrIvIeL~~d~aP~tv~nF~~L~~~~~-----g~~Y~g~~f~Rvi~gfviQgGd~~~~~~~~~~  171 (322)
                      .+++|||||+|+++++|+|+||||.+.||+||+||++||+.+.     +..|+++.|||++++|++|+||...+      
T Consensus         5 ~np~v~~di~i~~~~~G~i~ieL~~~~aP~tv~nF~~L~~~~~~~~~~~~~y~~~~f~rv~~~~~~q~G~~~~~------   78 (173)
T d1qoia_           5 VNPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGSTFHRVIKDFMIQGGDFVNG------   78 (173)
T ss_dssp             CCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHSCCEETTEECSSTTCBCCEEETTTEEEECCTTTS------
T ss_pred             CCCEEEEEEEECCEeCeEEEEEEcCCCCcHHHHHHHHhhcccccccCCCCCcCCcccceeccceeeccCCcccC------
Confidence            4789999999999999999999999999999999999999881     12299999999999999999997643      


Q ss_pred             cCCCCCCccccchhhhccCCCCCCCCCCCCCceeeeecCCCCCCcchhhhhccCcceeeccccCCCCCcceEEEEcCCCC
Q 020718          172 RRSGSNLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSP  251 (322)
Q Consensus       172 ~g~gg~~~~~~~~~E~~~~~~~~~g~~~~~G~v~m~v~~~~~~~~~~~l~ar~G~l~m~~an~~p~s~gSqFfItl~~~p  251 (322)
                      .+....   .....++..+.  ....++.+|+|+|                         ++.++++++|||||++++.+
T Consensus        79 ~~~~~~---~~~~~~~~~~~--~~~~~~~~G~l~m-------------------------a~~~~~s~~sqFfI~~~~~~  128 (173)
T d1qoia_          79 DGTGVA---SIYRGPFADEN--FKLRHSAPGLLSM-------------------------ANSGPSTNGCQFFITCSKCD  128 (173)
T ss_dssp             SSCCCC---CTTSSCBCCCC--CCSCCCSTTEEEE-------------------------CCSSTTCBCSCEEEESSCCG
T ss_pred             Ccceee---cccCCcccccc--cccccCCCcEEEe-------------------------eecCCCCCCceeeeeccCCc
Confidence            111110   11111121111  1223556666666                         45679999999999999999


Q ss_pred             CCCCCCcEEEEEEcCHHHHHHHhcCccccCCCCCCcchhhhhccccchhhcccCCCCCCccEEEeeeeec
Q 020718          252 ELDASSLVVGRVLEGMEVAEKIGEVKTVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNCGLM  321 (322)
Q Consensus       252 ~LDg~~~VFGrVi~Gmdvl~~I~~~~t~~~~~~~~~~~~~~~~gd~~~~~a~~~~~~P~~~V~I~~cG~l  321 (322)
                      +||++|+|||||++|||+|++|++++|+++                         ++|.++|+|++||+|
T Consensus       129 ~ldg~~tvFG~Vi~G~dvl~~I~~~~t~~~-------------------------~~P~~~i~I~~cGel  173 (173)
T d1qoia_         129 WLDGKHVVFGKIIDGLLVMRKIENVPTGPN-------------------------NKPKLPVVISQCGEM  173 (173)
T ss_dssp             GGTTTSCEEEEEEECHHHHHHHHTSCBCGG-------------------------GCBSSCEEEEEEEEC
T ss_pred             cCCcceeEEEEEechHHHHHHHHhCCcCCC-------------------------CcCCCCEEEEcccCC
Confidence            999999999999999999999999999886                         899999999999997

>d2cfea1 b.62.1.1 (A:1-162) Cyclophilin-like allergen Mal s 6 {Malassezia sympodialis [TaxId: 76777]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like allergen Mal s 6
species: Malassezia sympodialis [TaxId: 76777]

Probab=100.00  E-value=2e-42  Score=298.15  Aligned_cols=158  Identities=29%  Similarity=0.584  Sum_probs=132.3

Q ss_pred             eEEEEEEeCCeeeeeEEEEecCCCCChhHHHHHHHhcCCCcccccCcEEEEeccCeeEeeCccccCcccccccCCCC-CC
Q 020718          100 RVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHGGVRSYGVDAELARRSGS-NL  178 (322)
Q Consensus       100 ~v~~di~i~g~~~GrIvIeL~~d~aP~tv~nF~~L~~~~~g~~Y~g~~f~Rvi~gfviQgGd~~~~~~~~~~~g~gg-~~  178 (322)
                      .|||||+|+|+++|+|+||||.+.||+||+||++||+++.+.+|+|+.|||+++++++|+|++..+      ++.++ ..
T Consensus         3 ~V~fDi~i~~~~~G~i~ieL~~~~aP~tv~nF~~L~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~------~~~~~~~~   76 (162)
T d2cfea1           3 NVFFDITKNGAPLGTIKFKLFDDVVPKTAANFRALCTGEKGFGYAGSHFHRVIPDFMLQGGDFTAG------NGTGGKSI   76 (162)
T ss_dssp             CEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCCSTTCBCCEEETTTEEEECCTTTS------SSSCCCBT
T ss_pred             eEEEEEEECCEEeeEEEEEEcCCCChHHHHHHHHHHhhccCCccCCCEEEEEEecceEecCCCCCC------CCCCCccc
Confidence            699999999999999999999999999999999999999666699999999999999999998754      33333 22


Q ss_pred             ccccchhhhccCCCCCCCCCCCCCceeeeecCCCCCCcchhhhhccCcceeeccccCCCCCcceEEEEcCCCCCCCCCCc
Q 020718          179 ETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSL  258 (322)
Q Consensus       179 ~~~~~~~E~~~~~~~~~g~~~~~G~v~m~v~~~~~~~~~~~l~ar~G~l~m~~an~~p~s~gSqFfItl~~~p~LDg~~~  258 (322)
                      +...+.+|    ..  ...|+.+|+++|                         ++.++++++|||||++++.++||++|+
T Consensus        77 ~~~~~~~e----~~--~~~h~~~G~vsm-------------------------~~~~~~s~~sqF~I~~~~~~~ld~~~~  125 (162)
T d2cfea1          77 YGAKFADE----NF--QLKHNKPGLLSM-------------------------ANAGPNTNGSQFFITTVVTSWLDGKHV  125 (162)
T ss_dssp             TBSCBCCC----CC--CSCCCSTTEEEE-------------------------CCSSTTCBSSCEEEESSCCGGGTTTSC
T ss_pred             CCCccccc----cC--CCCCCCceEEEE-------------------------eecCCCCCCcceEEeecCCccccccce
Confidence            22333332    11  123556777776                         345689999999999999999999999


Q ss_pred             EEEEEEcCHHHHHHHhcCccccCCCCCCcchhhhhccccchhhcccCCCCCCccEEEeeeee
Q 020718          259 VVGRVLEGMEVAEKIGEVKTVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNCGL  320 (322)
Q Consensus       259 VFGrVi~Gmdvl~~I~~~~t~~~~~~~~~~~~~~~~gd~~~~~a~~~~~~P~~~V~I~~cG~  320 (322)
                      |||||++|||||++|+..++..                          ++|.++|+|++|||
T Consensus       126 vFG~Vi~G~dvl~~I~~~~~~~--------------------------~~P~~~i~I~~cgv  161 (162)
T d2cfea1         126 VFGEVIDGMNVVKAIEAEGSGS--------------------------GKPRSRIEIAKCGV  161 (162)
T ss_dssp             EEEEEEECHHHHHHHHTTCCTT--------------------------SCCSSCEEEEEEEE
T ss_pred             EEEEEEehHHHHHHHhcCCCCC--------------------------CCCCCCeEEEeeEc
Confidence            9999999999999999876654                          79999999999998

>d1qnga_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Plasmodium falciparum [TaxId: 5833]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Plasmodium falciparum [TaxId: 5833]

Probab=100.00  E-value=1.5e-42  Score=300.93  Aligned_cols=161  Identities=29%  Similarity=0.558  Sum_probs=134.1

Q ss_pred             CceEEEEEEeCCeeeeeEEEEecCCCCChhHHHHHHHhcCCC------cccccCcEEEEeccCeeEeeCccccCcccccc
Q 020718           98 TKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTA------GISYRRKEFIKIMPNYVQHGGVRSYGVDAELA  171 (322)
Q Consensus        98 ~~~v~~di~i~g~~~GrIvIeL~~d~aP~tv~nF~~L~~~~~------g~~Y~g~~f~Rvi~gfviQgGd~~~~~~~~~~  171 (322)
                      .++|||||+|++++.|+|+||||++.||+||+||++||++.+      ..+|+|+.|||+++++++|+|+...+      
T Consensus         3 r~~vy~Di~i~~t~~G~ivIeL~~~~aP~tv~nF~~l~~~~~~~~~~~~~~y~g~~~~rv~~~~~iq~g~~~~~------   76 (170)
T d1qnga_           3 RSKVFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHRIIPQFMCQGGDITNG------   76 (170)
T ss_dssp             SCEEEEEEEESSSEEEEEEEEECTTTCHHHHHHHHHHHHTCEECTTSSEECCTTCBCCEEETTTEEEECCTTTS------
T ss_pred             CCEEEEEEEECCEEccEEEEEECCCCChHHHHHHHhhhccccccccCccCccCcccceEEEeCceEEecCccCC------
Confidence            579999999999999999999999999999999999998642      24799999999999999999998654      


Q ss_pred             cCCCC-CCccccchhhhccCCCCCCCCCCCCCceeeeecCCCCCCcchhhhhccCcceeeccccCCCCCcceEEEEcCCC
Q 020718          172 RRSGS-NLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDS  250 (322)
Q Consensus       172 ~g~gg-~~~~~~~~~E~~~~~~~~~g~~~~~G~v~m~v~~~~~~~~~~~l~ar~G~l~m~~an~~p~s~gSqFfItl~~~  250 (322)
                      ++.++ ..++..+.++..      ...|+.+|+|+|                         ++.++++++|||||+++++
T Consensus        77 ~~~~~~~~~~~~~~~~~~------~~~~~~~G~lsm-------------------------a~~~~~s~~sqFfIt~~~~  125 (170)
T d1qnga_          77 NGSGGESIYGRSFTDENF------NMKHDQPGLLSM-------------------------ANAGPNTNSSQFFITLVPC  125 (170)
T ss_dssp             SSSCCCBTTBSCBCCCCC------CSCCCSTTEEEE-------------------------CCSSTTCBCSCEEEESSCC
T ss_pred             CCCCCcccCCCccccccc------cccCCCCeEEEE-------------------------eecCCCCccccceeccCCc
Confidence            33333 223333333221      123566677666                         4567999999999999999


Q ss_pred             CCCCCCCcEEEEEEcCHHHHHHHhcCccccCCCCCCcchhhhhccccchhhcccCCCCCCccEEEeeeeec
Q 020718          251 PELDASSLVVGRVLEGMEVAEKIGEVKTVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNCGLM  321 (322)
Q Consensus       251 p~LDg~~~VFGrVi~Gmdvl~~I~~~~t~~~~~~~~~~~~~~~~gd~~~~~a~~~~~~P~~~V~I~~cG~l  321 (322)
                      ++||++|+|||||++|||+|++|++.+++.                          ++|.++|+|++||+|
T Consensus       126 ~~Ld~~~~vFG~Vv~Gmdvl~~I~~~~~~~--------------------------g~P~~~i~I~~CG~l  170 (170)
T d1qnga_         126 PWLDGKHVVFGKVIEGMNVVREMEKEGAKS--------------------------GYVKRSVVITDCGEL  170 (170)
T ss_dssp             GGGTTTSCEEEEEEECHHHHHHHHTTCCTT--------------------------CCCSSCEEEEEEEEC
T ss_pred             ccccccccEEeEEeccHHHHHHHHhcCCCC--------------------------cCCccCEEEEeeEcC
Confidence            999999999999999999999999998865                          799999999999997

>d1ihga2 b.62.1.1 (A:2-196) Cyclophilin 40 isomerase domain {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin 40 isomerase domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=3.5e-42  Score=305.06  Aligned_cols=163  Identities=28%  Similarity=0.566  Sum_probs=135.7

Q ss_pred             CCceEEEEEEeCCeeeeeEEEEecCCCCChhHHHHHHHhcCCC--------cccccCcEEEEeccCeeEeeCccccCccc
Q 020718           97 PTKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTA--------GISYRRKEFIKIMPNYVQHGGVRSYGVDA  168 (322)
Q Consensus        97 ~~~~v~~di~i~g~~~GrIvIeL~~d~aP~tv~nF~~L~~~~~--------g~~Y~g~~f~Rvi~gfviQgGd~~~~~~~  168 (322)
                      .+++|||||+|+++++|+|+||||.+.||+||+||++||+++.        ..+|+|+.|||+++++++|+|+....   
T Consensus        13 ~np~v~~Di~i~~~~~G~I~IeL~~d~aP~tv~nF~~L~~~~~~~~~~~~~~~~y~g~~f~rv~~~~~i~~G~~~~~---   89 (195)
T d1ihga2          13 SNPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRIIKKFMIQGGDFSNQ---   89 (195)
T ss_dssp             TSCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTSSBSCCTTCBEEEEETTTEEEECCTTTS---
T ss_pred             CCCEEEEEEEECCEeeeEEEEEECCCCChHHHHHHHHHhccccccccccCCccccCCceeeEEEcCceeecCCccCC---
Confidence            3789999999999999999999999999999999999998763        24699999999999999999987543   


Q ss_pred             ccccCCCC-CCccccchhhhccCCCCCCCCCCCCCceeeeecCCCCCCcchhhhhccCcceeeccccCCCCCcceEEEEc
Q 020718          169 ELARRSGS-NLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVT  247 (322)
Q Consensus       169 ~~~~g~gg-~~~~~~~~~E~~~~~~~~~g~~~~~G~v~m~v~~~~~~~~~~~l~ar~G~l~m~~an~~p~s~gSqFfItl  247 (322)
                         .+.++ ..++..+.+|..      ...|+.+|+++|                         ++.++++++|||||++
T Consensus        90 ---~~~~~~~~~~~~~~~~~~------~~~h~~~G~lsm-------------------------~~~~~~s~~SqFfItl  135 (195)
T d1ihga2          90 ---NGTGGESIYGEKFEDENF------HYKHDKEGLLSM-------------------------ANAGSNTNGSQFFITT  135 (195)
T ss_dssp             ---SSSCCCBTTBSCBCCCCC------CBCCCSTTEEEE-------------------------CCSSTTCBCSCEEEES
T ss_pred             ---CCCCCccCCCCccccccc------CcccCcceEEee-------------------------eecCCCCCCceeEeec
Confidence               33333 222333333222      223566777666                         4567999999999999


Q ss_pred             CCCCCCCCCCcEEEEEEcCHHHHHHHhcCccccCCCCCCcchhhhhccccchhhcccCCCCCCccEEEeeeeecC
Q 020718          248 KDSPELDASSLVVGRVLEGMEVAEKIGEVKTVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNCGLME  322 (322)
Q Consensus       248 ~~~p~LDg~~~VFGrVi~Gmdvl~~I~~~~t~~~~~~~~~~~~~~~~gd~~~~~a~~~~~~P~~~V~I~~cG~l~  322 (322)
                      ++.++||++|+|||||++|||||++|++++++.                          ++|.++|+|++||+|+
T Consensus       136 ~~~~~LDg~ytVFG~Vv~Gmdvl~~I~~~~t~~--------------------------~~P~~~i~I~~cG~l~  184 (195)
T d1ihga2         136 VPTPHLDGKHVVFGQVIKGMGVAKILENVEVKG--------------------------EKPAKLCVIAECGELK  184 (195)
T ss_dssp             SCCGGGTTTSCEEEEEEECHHHHHHHHTSCEET--------------------------TEESSCEEEEEEEEEC
T ss_pred             cCCcccCCcceEEEEEecCHHHHHHHHcCCCCC--------------------------CCcCCCeEEEECcccC
Confidence            999999999999999999999999999999865                          7999999999999985

>d1a33a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Nematode (Brugia malayi) [TaxId: 6279]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Nematode (Brugia malayi) [TaxId: 6279]

Probab=100.00  E-value=5.4e-42  Score=298.15  Aligned_cols=162  Identities=35%  Similarity=0.612  Sum_probs=133.9

Q ss_pred             CceEEEEEEeCCeeeeeEEEEecCCCCChhHHHHHHHhcCCC--------cccccCcEEEEeccCeeEeeCccccCcccc
Q 020718           98 TKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTA--------GISYRRKEFIKIMPNYVQHGGVRSYGVDAE  169 (322)
Q Consensus        98 ~~~v~~di~i~g~~~GrIvIeL~~d~aP~tv~nF~~L~~~~~--------g~~Y~g~~f~Rvi~gfviQgGd~~~~~~~~  169 (322)
                      .++|||||+|+++++|+|+||||.+.||+||+||++||+++.        ..+|+++.|||+++++++|+|+...+    
T Consensus         3 ~~~v~~di~i~~~~~G~I~ieL~~d~aP~tv~nF~~l~~~~~~~~~~~~k~~~Y~~~~f~Rv~~~~~iq~g~~~~~----   78 (174)
T d1a33a_           3 RRRVFLDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRVIKNFMIQGGDFTKG----   78 (174)
T ss_dssp             CEEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBCCCTTCBEEEEETTTEEEECCTTTS----
T ss_pred             CCEEEEEEEECCEeceEEEEEECCCCChHHHHHHHHHHhcccCCCcccCccceeCCceeeEEEeCCEEeeCCCCCC----
Confidence            679999999999999999999999999999999999998753        23799999999999999999998654    


Q ss_pred             cccCCCC-CCccccchhhhccCCCCCCCCCCCCCceeeeecCCCCCCcchhhhhccCcceeeccccCCCCCcceEEEEcC
Q 020718          170 LARRSGS-NLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTK  248 (322)
Q Consensus       170 ~~~g~gg-~~~~~~~~~E~~~~~~~~~g~~~~~G~v~m~v~~~~~~~~~~~l~ar~G~l~m~~an~~p~s~gSqFfItl~  248 (322)
                        .+.++ +.++....++      .....++.+|+++|                         ++.++++++|||||+++
T Consensus        79 --~~~~~~~~~~~~~~~~------~~~~~~~~~g~l~~-------------------------~~~~~~s~~sqFfI~~~  125 (174)
T d1a33a_          79 --DGTGGESIYGGMFDDE------EFVMKHDEPFVVSM-------------------------ANKGPNTNGSQFFITTT  125 (174)
T ss_dssp             --SSSCCCCTTSSCBCCC------CSCSCCCSTTEEEE-------------------------CCSSTTCBCSCEEEESS
T ss_pred             --CCCCCCCccCcccccc------ccccccCcceeeee-------------------------eccCCCCCCcccccccC
Confidence              23332 2221111111      12233556666665                         45679999999999999


Q ss_pred             CCCCCCCCCcEEEEEEcCHHHHHHHhcCccccCCCCCCcchhhhhccccchhhcccCCCCCCccEEEeeeeec
Q 020718          249 DSPELDASSLVVGRVLEGMEVAEKIGEVKTVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNCGLM  321 (322)
Q Consensus       249 ~~p~LDg~~~VFGrVi~Gmdvl~~I~~~~t~~~~~~~~~~~~~~~~gd~~~~~a~~~~~~P~~~V~I~~cG~l  321 (322)
                      +.|+||++|+|||||++|||||++|++++|+.+                         ++|.++|+|++||+|
T Consensus       126 ~~p~ld~~~~vFG~VveG~dvl~~I~~~~t~~~-------------------------~~P~~~i~I~~cGel  173 (174)
T d1a33a_         126 PAPHLNNIHVVFGKVVSGQEVVTKIEYLKTNSK-------------------------NRPLADVVILNCGEL  173 (174)
T ss_dssp             CCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTT-------------------------SCBSSCEEEEEEEEC
T ss_pred             CcccccccceeEEEEechHHHHHHHHhCCcCCC-------------------------CCCCCCEEEEeeEEE
Confidence            999999999999999999999999999999886                         899999999999997

>d1z81a1 b.62.1.1 (A:25-210) Cyclophilin (eukaryotic) {Plasmodium yoelii [TaxId: 5861]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Plasmodium yoelii [TaxId: 5861]

Probab=100.00  E-value=9.4e-42  Score=300.10  Aligned_cols=163  Identities=23%  Similarity=0.447  Sum_probs=133.7

Q ss_pred             CceEEEEEEeCCeeeeeEEEEecCCCCChhHHHHHHHhcCCCc-----ccccCcEEEEeccCeeEeeCccccCccccccc
Q 020718           98 TKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAG-----ISYRRKEFIKIMPNYVQHGGVRSYGVDAELAR  172 (322)
Q Consensus        98 ~~~v~~di~i~g~~~GrIvIeL~~d~aP~tv~nF~~L~~~~~g-----~~Y~g~~f~Rvi~gfviQgGd~~~~~~~~~~~  172 (322)
                      +++|||||+|+++++|||+||||.+.||+||+||++||+++.+     ..|+|+.|||+++++++|+||....      .
T Consensus        16 np~V~~di~i~~~~~G~I~ieL~~d~aP~tv~nF~~L~~~~~~~~~~~~~Y~g~~f~rv~~~~~i~~G~~~~~------~   89 (186)
T d1z81a1          16 NPVVFMDINLGNNFLGKFKFELFQNIVPKTSENFRQFCTGEYKVNNLPVGYKNTIFHRVIKEFMIQGGDFINH------N   89 (186)
T ss_dssp             CCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTCCBSSSSBCSSTTEECCEEETTTEEEECCTTTS------S
T ss_pred             CCEEEEEEEECCEeceEEEEEEcCCCChHHHHHHHHHHhcccccCCcccccCCCeeeeeecceeeecCCcccc------C
Confidence            7899999999999999999999999999999999999999831     2399999999999999999997543      1


Q ss_pred             CCCC-CCccccchhhhccCCCCCCCCCCCCCceeeeecCCCCCCcchhhhhccCcceeeccccCCCCCcceEEEEcCCCC
Q 020718          173 RSGS-NLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSP  251 (322)
Q Consensus       173 g~gg-~~~~~~~~~E~~~~~~~~~g~~~~~G~v~m~v~~~~~~~~~~~l~ar~G~l~m~~an~~p~s~gSqFfItl~~~p  251 (322)
                      +.+. ..++..+.++.      ....|+.+|+++|                         ++.++++++|||||++++.+
T Consensus        90 ~~~~~~~~~~~~~~~~------~~~~~~~~G~~~~-------------------------~~~g~~~~~sqFfIt~~~~p  138 (186)
T d1z81a1          90 GSGSLSIYGEKFDDEN------FDIKHDKEGLLSM-------------------------ANSGPNTNGCQFFITTKKCE  138 (186)
T ss_dssp             SCCCCBTTBSCCCCCC------CCSCCCSTTEEEE-------------------------CCSSSSCCCSCEEEESSCCG
T ss_pred             CcccccccCCcccccc------cccccCCCccchh-------------------------hhcCCCccccceeeeccccc
Confidence            2221 22233332222      1223556666665                         45679999999999999999


Q ss_pred             CCCCCCcEEEEEEcC--HHHHHHHhcCccccCCCCCCcchhhhhccccchhhcccCCCCCCccEEEeeeeec
Q 020718          252 ELDASSLVVGRVLEG--MEVAEKIGEVKTVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNCGLM  321 (322)
Q Consensus       252 ~LDg~~~VFGrVi~G--mdvl~~I~~~~t~~~~~~~~~~~~~~~~gd~~~~~a~~~~~~P~~~V~I~~cG~l  321 (322)
                      +||++|+|||||++|  ||+|++|+.+++++.+                        ++|.++|+|++||+|
T Consensus       139 ~Ldg~~tVFG~Vv~G~~mdvv~kI~~~~~~~~~------------------------~~P~~~i~I~~CGel  186 (186)
T d1z81a1         139 WLDGKNVVFGRIIDNDSLLLLKKIENVSVTPYI------------------------YKPKIPINVVECGEL  186 (186)
T ss_dssp             GGBTTBCEEEEECSHHHHHHHHHHHHSCBCTTT------------------------CCBSSCEEEEEEEEC
T ss_pred             ccCCCccEEEEEEeCccHHHHHHHhccCCCCCC------------------------CccCCCEEEEeCCcC
Confidence            999999999999999  9999999999997642                        899999999999997

>d2c3ba1 b.62.1.1 (A:1-171) Cyclophilin (eukaryotic) {Aspergillus fumigatus [TaxId: 5085]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Aspergillus fumigatus [TaxId: 5085]

Probab=100.00  E-value=3.8e-40  Score=286.19  Aligned_cols=162  Identities=27%  Similarity=0.530  Sum_probs=116.0

Q ss_pred             ceEEEEEE-----eCCeeeeeEEEEecCCCCChhHHHHHHHhcCCCcccccCcEEEEeccCeeEeeCccccCcccccccC
Q 020718           99 KRVFLDIS-----IDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHGGVRSYGVDAELARR  173 (322)
Q Consensus        99 ~~v~~di~-----i~g~~~GrIvIeL~~d~aP~tv~nF~~L~~~~~g~~Y~g~~f~Rvi~gfviQgGd~~~~~~~~~~~g  173 (322)
                      ++|||||+     ++.+.+|+|+||||.+.||+||+||++||+++.+.+|+++.|||++++|++|+||+..+      ++
T Consensus         2 ~~v~~di~~~~~~~~~T~~G~i~IeL~~~~aP~tv~nF~~l~~~~~~~~y~~~~f~ri~~~~~iq~G~~~~~------~~   75 (171)
T d2c3ba1           2 SQVFFDVEYAPVGTAETKVGRIVFNLFDKDVPKTAKNFRELCKRPAGEGYRESTFHRIIPNFMIQGGDFTRG------NG   75 (171)
T ss_dssp             CCEEEEEEECCTTCSCCEEEEEEEEECTTTSHHHHHHHHHHHHSCTTTSSTTCBCCEEETTTEEEECC------------
T ss_pred             CeEEEeeeccccccccceeeEEEEEEcCCCChHHHHHHHHHhhhcccccccCceeeEEEEEEeeEcCCccCC------CC
Confidence            47999998     56778999999999999999999999999998555599999999999999999998643      23


Q ss_pred             CCC-CCccccchhhhccCCCCCCCCCCCCCceeeeecCCCCCCcchhhhhccCcceeeccccCCCCCcceEEEEcCCCCC
Q 020718          174 SGS-NLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPE  252 (322)
Q Consensus       174 ~gg-~~~~~~~~~E~~~~~~~~~g~~~~~G~v~m~v~~~~~~~~~~~l~ar~G~l~m~~an~~p~s~gSqFfItl~~~p~  252 (322)
                      .++ ...+..+.++                             .....|+++|.|+|  ++.++++++|||||++++.++
T Consensus        76 ~~~~~~~~~~~~~~-----------------------------~~~~~~~~~G~lsm--a~~~~~s~~sqFfI~~~~~~~  124 (171)
T d2c3ba1          76 TGGRSIYGDKFADE-----------------------------NFSRKHDKKGILSM--ANAGPNTNGSQFFITTAVTSW  124 (171)
T ss_dssp             ---------------------------------------------CHHHHHTCEEEE--C---------CEEEECSCCTT
T ss_pred             CCCCcCCCCccccc-----------------------------cccccCCCCceEEe--eecCCCCCCcceeeccCCccc
Confidence            332 1111111111                             11122345555555  346799999999999999999


Q ss_pred             CCCCCcEEEEEEc--CHHHHHHHhcCccccCCCCCCcchhhhhccccchhhcccCCCCCCccEEEeeeeec
Q 020718          253 LDASSLVVGRVLE--GMEVAEKIGEVKTVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNCGLM  321 (322)
Q Consensus       253 LDg~~~VFGrVi~--Gmdvl~~I~~~~t~~~~~~~~~~~~~~~~gd~~~~~a~~~~~~P~~~V~I~~cG~l  321 (322)
                      ||++|+|||||++  |||||++|++++++..+                        .+|..+|+|.+||+|
T Consensus       125 ldg~~tvFG~Vie~~G~dvl~~I~~~~t~~g~------------------------~~p~~~v~I~~cGel  171 (171)
T d2c3ba1         125 LDGKHVVFGEVADEKSYSVVKEIEALGSSSGS------------------------VRSNTRPKIVNCGEL  171 (171)
T ss_dssp             CCSCCEEEEEECSHHHHHHHHHHHTTCCTTSC------------------------CCSSSCCEEEEEEEC
T ss_pred             cCCCceEEEEEEeccCHHHHHHHHcCCCCCCC------------------------cCCCCCEEEEeCccC
Confidence            9999999999994  99999999999987742                        689999999999997

>d2ok3a1 b.62.1.1 (A:1-159) Cyclophilin-like protein PPIL3B {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like protein PPIL3B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-39  Score=278.58  Aligned_cols=154  Identities=21%  Similarity=0.423  Sum_probs=126.1

Q ss_pred             EEEEEEeCCeeeeeEEEEecCCCCChhHHHHHHHhcCCCcccccCcEEEEeccCeeEeeCccccCcccccccCCCCCCcc
Q 020718          101 VFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHGGVRSYGVDAELARRSGSNLET  180 (322)
Q Consensus       101 v~~di~i~g~~~GrIvIeL~~d~aP~tv~nF~~L~~~~~g~~Y~g~~f~Rvi~gfviQgGd~~~~~~~~~~~g~gg~~~~  180 (322)
                      |-|+++     .|+|+||||++.||+||+||++||+++   +|+|+.|||++++|+|||||+...      ...+...++
T Consensus         3 V~~~T~-----~G~i~ieL~~~~aP~tv~nF~~L~~~g---~Y~~~~f~rv~~~~~iq~Gd~~~~------~~~~~~~~~   68 (159)
T d2ok3a1           3 VTLHTD-----VGDIKIEVFCERTPKTCENFLALCASN---YYNGCIFHRNIKGFMVQTGDPTGT------GRGGNSIWG   68 (159)
T ss_dssp             EEEEET-----TEEEEEEECTTTCHHHHHHHHHHHHTT---TTTTCBCCEEETTTEEEECCTTSS------SSCCCCTTS
T ss_pred             EEEEeC-----CeEEEEEEcCCCChHHHHHHHHHHhhh---cccceeEecccCCeEEEeCCcccc------CCCCcccCC
Confidence            556666     999999999999999999999999999   999999999999999999997642      112223333


Q ss_pred             ccchhhhccCCCCCCCCCCCCCceeeeecCCCCCCcchhhhhccCcceeeccccCCCCCcceEEEEcCCCCCCCCCCcEE
Q 020718          181 ERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLVV  260 (322)
Q Consensus       181 ~~~~~E~~~~~~~~~g~~~~~G~v~m~v~~~~~~~~~~~l~ar~G~l~m~~an~~p~s~gSqFfItl~~~p~LDg~~~VF  260 (322)
                      ..+..|...     ...++.+|+|+|                         ++.++++++|||||++++.++||++|+||
T Consensus        69 ~~~~~e~~~-----~~~~~~~G~lsm-------------------------a~~~~~s~~sqFfIt~~~~p~ld~~~tvF  118 (159)
T d2ok3a1          69 KKFEDEYSE-----YLKHNVRGVVSM-------------------------ANNGPNTNGSQFFITYGKQPHLDMKYTVF  118 (159)
T ss_dssp             SCBCCCCCT-----TCCSCSTTEEEE-------------------------CCSSTTCBCSCEEEESSCCGGGTTTSCEE
T ss_pred             Ccccccccc-----CCCCCCCeEEEE-------------------------eeCCCCCcCcceEeeeccCcccccceEEE
Confidence            444443221     112456666666                         45678999999999999999999999999


Q ss_pred             EEEEcCHHHHHHHhcCccccCCCCCCcchhhhhccccchhhcccCCCCCCccEEEeeeeecC
Q 020718          261 GRVLEGMEVAEKIGEVKTVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNCGLME  322 (322)
Q Consensus       261 GrVi~Gmdvl~~I~~~~t~~~~~~~~~~~~~~~~gd~~~~~a~~~~~~P~~~V~I~~cG~l~  322 (322)
                      |||++|||+|++|+++++++++                        ++|..+|+|.+|++|+
T Consensus       119 G~V~~G~~vl~~I~~~~~~~~~------------------------~~P~~~i~I~~v~i~~  156 (159)
T d2ok3a1         119 GKVIDGLETLDELEKLPVNEKT------------------------YRPLNDVHIKDITIHA  156 (159)
T ss_dssp             EEEEECHHHHHHHHTCCBCTTT------------------------CCBSSCCBEEEEEEEC
T ss_pred             EecccchHHHHHHHcCcCCCCC------------------------CCcCCCcEEEEEEEEe
Confidence            9999999999999999998753                        7999999999999974

>d1v9ta_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.8e-38  Score=274.09  Aligned_cols=159  Identities=26%  Similarity=0.411  Sum_probs=131.1

Q ss_pred             CCceEEEEEEeCCeeeeeEEEEecCCCCChhHHHHHHHhcCCCcccccCcEEEEeccCeeEeeCccccCcccccccCCCC
Q 020718           97 PTKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHGGVRSYGVDAELARRSGS  176 (322)
Q Consensus        97 ~~~~v~~di~i~g~~~GrIvIeL~~d~aP~tv~nF~~L~~~~~g~~Y~g~~f~Rvi~gfviQgGd~~~~~~~~~~~g~gg  176 (322)
                      -+++|+|+++     .|+|+||||.+.||+||+||++||+.+   +|+|+.|||++++|++|+|+...+        .+.
T Consensus         3 g~~~V~l~T~-----~G~i~ieL~~~~aP~tv~nF~~L~~~~---~Y~g~~fhRv~~~~~iq~G~~~~~--------~~~   66 (166)
T d1v9ta_           3 GDPHVLLTTS-----AGNIELELDKQKAPVSVQNFVDYVNSG---FYNNTTFHRVIPGFMIQGGGFTEQ--------MQQ   66 (166)
T ss_dssp             CSCEEEEEET-----TEEEEEEECTTTCHHHHHHHHHHHHTT---TTTTCBEEEEETTTEEEESSBCTT--------CCB
T ss_pred             CCCEEEEEEC-----CeeEEEEEeCCCChHHHHHHHHHhhCC---ccccceeeEEEEEeecccCCcCCc--------ccc
Confidence            3678999999     999999999999999999999999999   999999999999999999997643        222


Q ss_pred             CCccccchhhhccCCCCCCCCCCCCCceeeeecCCCCCCcchhhhhccCcceeeccccCCCCCcceEEEEcCCCCCCCCC
Q 020718          177 NLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDAS  256 (322)
Q Consensus       177 ~~~~~~~~~E~~~~~~~~~g~~~~~G~v~m~v~~~~~~~~~~~l~ar~G~l~m~~an~~p~s~gSqFfItl~~~p~LDg~  256 (322)
                      ..+++.+.+|+..      .++|.+|.|+|+                        .+.++++++|||||++++.++||+.
T Consensus        67 ~~~~~~~~~e~~~------~~~~~rg~v~~~------------------------~~~~~~s~~sqFfI~~~~~~~ld~~  116 (166)
T d1v9ta_          67 KKPNPPIKNEADN------GLRNTRGTIAMA------------------------RTADKDSATSQFFINVADNAFLDHG  116 (166)
T ss_dssp             CCCCCCBCCCGGG------SCCCCTTEEEEC------------------------CCSSTTCBCSCEEEESSCCGGGSCC
T ss_pred             cCCCCCccccccc------cccccCCEEEEE------------------------eeecCCCcccccccccCCccccccc
Confidence            2344556665432      245677777773                        2356899999999999999988864


Q ss_pred             -----CcEEEEEEcCHHHHHHHhcCccccCCCCCCcchhhhhccccchhhcccCCCCCCccEEEeeeeecC
Q 020718          257 -----SLVVGRVLEGMEVAEKIGEVKTVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNCGLME  322 (322)
Q Consensus       257 -----~~VFGrVi~Gmdvl~~I~~~~t~~~~~~~~~~~~~~~~gd~~~~~a~~~~~~P~~~V~I~~cG~l~  322 (322)
                           |+|||+|++|||+|++|+++++++...                     ..++|.++|+|.+||+|.
T Consensus       117 ~~~~~~tvfG~VveG~dvl~~I~~~~~~~~~~---------------------~~~~P~~~v~I~~~~vlp  166 (166)
T d1v9ta_         117 QRDFGYAVFGKVVKGMDVADKISQVPTHDVGP---------------------YQNVPSKPVVILSATVLP  166 (166)
T ss_dssp             SSCCCCCEEEEEEECHHHHHHHHTSCEEEETT---------------------EEEEESSCCBEEEEEECC
T ss_pred             cccCCEEEeeEEeccHHHHHHHHhCcccCCCC---------------------CCCccCCCeEEEEEEEcC
Confidence                 899999999999999999999876410                     115999999999999984

>d2fu0a1 b.62.1.1 (A:5-159) Putative cyclophilin PFE0505w {Plasmodium falciparum [TaxId: 5833]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Putative cyclophilin PFE0505w
species: Plasmodium falciparum [TaxId: 5833]

Probab=100.00  E-value=2.6e-38  Score=269.99  Aligned_cols=151  Identities=21%  Similarity=0.339  Sum_probs=123.9

Q ss_pred             eEEEEEEeCCeeeeeEEEEecCCCCChhHHHHHHHhcCCCcccccCcEEEEeccCeeEeeCccccCcccccccCCCC-CC
Q 020718          100 RVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHGGVRSYGVDAELARRSGS-NL  178 (322)
Q Consensus       100 ~v~~di~i~g~~~GrIvIeL~~d~aP~tv~nF~~L~~~~~g~~Y~g~~f~Rvi~gfviQgGd~~~~~~~~~~~g~gg-~~  178 (322)
                      .+.|.++     +|+|+||||.+.||+||+||++||+++   +|+|+.|||++++|++|+||+...       +.++ +.
T Consensus         3 ~~~i~T~-----~G~i~ieL~~~~aP~tv~nF~~l~~~g---~Y~g~~f~rv~~~~~iq~Gd~~~~-------~~~~~~~   67 (155)
T d2fu0a1           3 SAIIYTT-----MGDIHISLFYKECKKTVQNFSVHSING---YYNNCIFHRVIKHFMVQTGDPSGD-------GTGGESI   67 (155)
T ss_dssp             EEEEEET-----TEEEEEEECTTTCHHHHHHHHHHHHTT---TTTTCBCCEEETTTEEEECCTTSS-------SSCCCCT
T ss_pred             eEEEEEc-----ccEEEEEEcCCCChHHHHHHhhHhhCC---ccccceeeeeeecceeeccCCCCC-------CcCCccc
Confidence            4667777     999999999999999999999999999   999999999999999999998632       2222 44


Q ss_pred             ccccchhhhccCCCCCCCCCCCCCceeeeecCCCCCCcchhhhhccCcceeeccccCCCCCcceEEEEcCCCCCCCCCCc
Q 020718          179 ETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSL  258 (322)
Q Consensus       179 ~~~~~~~E~~~~~~~~~g~~~~~G~v~m~v~~~~~~~~~~~l~ar~G~l~m~~an~~p~s~gSqFfItl~~~p~LDg~~~  258 (322)
                      +++.+++|.....     .++..|+++|                         ++.++++++|||||++++.++||++|+
T Consensus        68 ~~~~~~~~~~~~~-----~~~~~~~~~~-------------------------~~~~~~s~~sqFfI~~~~~~~ld~~~t  117 (155)
T d2fu0a1          68 WGNEFEDEFFDHL-----NHSKPFMVSM-------------------------ANCGPNTNGSQFFITTVPCPWLDFKHT  117 (155)
T ss_dssp             TSSCBCCCCBTTB-----CSSSSSEEEE-------------------------CCSSTTCBCSCEEEESSCCGGGTTTSC
T ss_pred             CCCcccccccccc-----ccCCccEEEe-------------------------cccCCCCCCccceecccCccccccceE
Confidence            4455544432211     1223333333                         567799999999999999999999999


Q ss_pred             EEEEEEcCHHHHHHHhcCccccCCCCCCcchhhhhccccchhhcccCCCCCCccEEEeeeee
Q 020718          259 VVGRVLEGMEVAEKIGEVKTVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNCGL  320 (322)
Q Consensus       259 VFGrVi~Gmdvl~~I~~~~t~~~~~~~~~~~~~~~~gd~~~~~a~~~~~~P~~~V~I~~cG~  320 (322)
                      |||||++|||+|++|++++++++                         ++|.++|+|.+|-+
T Consensus       118 vFG~Vi~G~~vv~~I~~~~t~~~-------------------------~~P~~~i~I~~v~i  154 (155)
T d2fu0a1         118 VFGKVTQGSKIVLDIEKVRTDKR-------------------------DKPLEDIKILNIKI  154 (155)
T ss_dssp             EEEEEEECHHHHHHHHTSCBCTT-------------------------SCBSSCCBEEEEEE
T ss_pred             EEEEEeccHHHHHHHHhCCCCCC-------------------------CCcCCCcEEEEEEE
Confidence            99999999999999999999887                         89999999999964

>d1xwna1 b.62.1.1 (A:1-166) Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-38  Score=274.04  Aligned_cols=151  Identities=25%  Similarity=0.473  Sum_probs=126.4

Q ss_pred             CceEEEEEEeCCeeeeeEEEEecCCCCChhHHHHHHHhcCCCcccccCcEEEEeccCeeEeeCccccCcccccccCCCC-
Q 020718           98 TKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHGGVRSYGVDAELARRSGS-  176 (322)
Q Consensus        98 ~~~v~~di~i~g~~~GrIvIeL~~d~aP~tv~nF~~L~~~~~g~~Y~g~~f~Rvi~gfviQgGd~~~~~~~~~~~g~gg-  176 (322)
                      .++|+|+++     +|+|+||||.+.||+||+||++||+.+   +|+|+.|||++++|++|+||+..       .+.++ 
T Consensus        11 ~p~v~~~T~-----~G~i~ieL~~~~aP~tv~nF~~L~~~g---~Y~g~~f~rv~~~~~iq~Gd~~~-------~~~~~~   75 (166)
T d1xwna1          11 PPNVYLETS-----MGIIVLELYWKHAPKTCKNFAELARRG---YYNGTKFHRIIKDFMIQGGDPTG-------TGRGGA   75 (166)
T ss_dssp             CCEEEEEES-----SCEEEEEECTTTCHHHHHHHHHHHHHT---SSTTCCEEEEETTTEEEECCSTT-------TTSSCC
T ss_pred             CCEEEEEEC-----ceeEEEEEcCCCChHHHHHHHHHHhcC---CcCceeeeEEcccEEEEeCCCCC-------CCCCCc
Confidence            468999999     899999999999999999999999999   99999999999999999999853       23333 


Q ss_pred             CCccccchhhhccCCCCCCCCCCCCCceeeeecCCCCCCcchhhhhccCcceeeccccCCCCCcceEEEEcCCCCCCCCC
Q 020718          177 NLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDAS  256 (322)
Q Consensus       177 ~~~~~~~~~E~~~~~~~~~g~~~~~G~v~m~v~~~~~~~~~~~l~ar~G~l~m~~an~~p~s~gSqFfItl~~~p~LDg~  256 (322)
                      ..++..+.+|....     ..++.+|+|+|                         ++.++|+++|||||++++.++||++
T Consensus        76 ~~~~~~~~~e~~~~-----~~~~~~G~lsm-------------------------~~~~~~s~~sqFfI~~~~~~~ld~~  125 (166)
T d1xwna1          76 SIYGKQFEDELHPD-----LKFTGAGILAM-------------------------ANAGPDTNGSQFFVTLAPTQWLDGK  125 (166)
T ss_dssp             CSSCSCCCCCCCTT-----CCSCSSSEEEE-------------------------EEEETTEEEEEEEEECSCCSTTTTT
T ss_pred             cCCCCccccccCCC-----CCCCCCeEEEe-------------------------cccCCCCCCcceEEeecChhhcccc
Confidence            34444454443211     22455666666                         3456899999999999999999999


Q ss_pred             CcEEEEEEcCHHHHHHHhcCccccCCCCCCcchhhhhccccchhhcccCCCCCCccEEEeee
Q 020718          257 SLVVGRVLEGMEVAEKIGEVKTVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNC  318 (322)
Q Consensus       257 ~~VFGrVi~Gmdvl~~I~~~~t~~~~~~~~~~~~~~~~gd~~~~~a~~~~~~P~~~V~I~~c  318 (322)
                      |+|||||++|||||++|++++++.+                         ++|.++|+|.+.
T Consensus       126 ~tvFG~Vi~G~dvl~~I~~~~t~~~-------------------------~~P~~~I~I~~a  162 (166)
T d1xwna1         126 HTIFGRVCQGIGMVNRVGMVETNSQ-------------------------DRPVDDVKIIKA  162 (166)
T ss_dssp             SEEEEECSSCHHHHHHHHHSCBCSS-------------------------SCBSSCCCEEEE
T ss_pred             ceEEEEEechHHHHHHHHhCCCCCC-------------------------CCCCCCeEEEEe
Confidence            9999999999999999999999887                         899999999864

>d1zkca1 b.62.1.1 (A:280-457) Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.2e-38  Score=274.35  Aligned_cols=153  Identities=21%  Similarity=0.373  Sum_probs=127.0

Q ss_pred             eEEEEEEeCCeeeeeEEEEecCCCCChhHHHHHHHhcCCCcccccCcEEEEeccCeeEeeCccccCcccccccCCCC-CC
Q 020718          100 RVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHGGVRSYGVDAELARRSGS-NL  178 (322)
Q Consensus       100 ~v~~di~i~g~~~GrIvIeL~~d~aP~tv~nF~~L~~~~~g~~Y~g~~f~Rvi~gfviQgGd~~~~~~~~~~~g~gg-~~  178 (322)
                      .|-|+++     .|+|+||||.+.||+||+||++||+.+   +|+|+.|||++++|++|+||+..       .+.++ ..
T Consensus         2 ~v~l~T~-----~G~i~IeL~~~~aP~tv~nF~~L~~~~---~Y~g~~f~rv~~~~~iq~Gd~~~-------~~~~~~~~   66 (178)
T d1zkca1           2 YVRLHTN-----KGDLNLELHCDLTPKTCENFIRLCKKH---YYDGTIFHRSIRNFVIQGGDPTG-------TGTGGESY   66 (178)
T ss_dssp             EEEEEET-----TEEEEEEECTTTSHHHHHHHHHHHHTT---TTTTEEEEEEETTTEEEECCTTS-------SSSCCCBT
T ss_pred             EEEEEeC-----CEEEEEEEcCCCChHHHHHHHHHHhcC---CcCceEeeeccceeEEecCCccC-------CCCCCccc
Confidence            3455666     999999999999999999999999999   99999999999999999999854       23443 33


Q ss_pred             ccccchhhhccCCCCCCCCCCCCCceeeeecCCCCCCcchhhhhccCcceeeccccCCCCCcceEEEEcCCCCCCCCCCc
Q 020718          179 ETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSL  258 (322)
Q Consensus       179 ~~~~~~~E~~~~~~~~~g~~~~~G~v~m~v~~~~~~~~~~~l~ar~G~l~m~~an~~p~s~gSqFfItl~~~p~LDg~~~  258 (322)
                      ++..+.+|....     ..|+.+|+|+|                         ++.++++++|||||++++.++||++|+
T Consensus        67 ~~~~~~~E~~~~-----l~~~~~G~lsm-------------------------a~~~~~s~~sqF~It~~~~~~ld~~~~  116 (178)
T d1zkca1          67 WGKPFKDEFRPN-----LSHTGRGILSM-------------------------ANSGPNSNRSQFFITFRSCAYLDKKHT  116 (178)
T ss_dssp             TBSCBCCCCCTT-----CCSCSTTEEEE-------------------------CCSSTTCBCSCEEEESSCCGGGTTTSC
T ss_pred             CCCCcCCccccc-----cCCCCCeEEEE-------------------------eecCCCCccceeeccccCCcccCCcce
Confidence            445555553211     12445666666                         456789999999999999999999999


Q ss_pred             EEEEEEcCHHHHHHHhcCccccCCCCCCcchhhhhccccchhhcccCCCCCCccEEEeeeeec
Q 020718          259 VVGRVLEGMEVAEKIGEVKTVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNCGLM  321 (322)
Q Consensus       259 VFGrVi~Gmdvl~~I~~~~t~~~~~~~~~~~~~~~~gd~~~~~a~~~~~~P~~~V~I~~cG~l  321 (322)
                      |||||++|||+|++|++++++..+                        ++|.++|+|.+|.+|
T Consensus       117 vFG~Vv~G~dvl~~I~~~~t~~~~------------------------~~P~~~v~I~~~~Il  155 (178)
T d1zkca1         117 IFGRVVGGFDVLTAMENVESDPKT------------------------DRPKEEIRIDATTVF  155 (178)
T ss_dssp             EEEEEEECHHHHHHHHHSCBCTTT------------------------CCBSSCCEEEEEEEE
T ss_pred             EEEEeeCcHHHHHHHHcCCCCCCC------------------------CccCCCeEEEEEEEE
Confidence            999999999999999999997543                        899999999999986

>d2b71a1 b.62.1.1 (A:23-191) Cyclophilin-like protein PY00693 {Plasmodium yoelii [TaxId: 5861]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like protein PY00693
species: Plasmodium yoelii [TaxId: 5861]

Probab=100.00  E-value=1.8e-37  Score=268.67  Aligned_cols=151  Identities=23%  Similarity=0.369  Sum_probs=122.8

Q ss_pred             eEEEEEEeCCeeeeeEEEEecCCCCChhHHHHHHHhcCCCcccccCcEEEEeccCeeEeeCccccCcccccccCCCCCCc
Q 020718          100 RVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHGGVRSYGVDAELARRSGSNLE  179 (322)
Q Consensus       100 ~v~~di~i~g~~~GrIvIeL~~d~aP~tv~nF~~L~~~~~g~~Y~g~~f~Rvi~gfviQgGd~~~~~~~~~~~g~gg~~~  179 (322)
                      .|-|+++     .|+|+||||.+.||+||+||++||+.+   +|+|+.|||++++|++||||....      ...+..+.
T Consensus        18 ~V~l~T~-----~G~i~IeL~~d~aP~tv~nF~~L~~~g---~Y~~~~f~rv~~~~~iq~g~~~~~------~~~~~~~~   83 (169)
T d2b71a1          18 YITIYTN-----LGDFEVELYWYHSPKTCLNFYTLCEMG---FYDNTIFHRVIPNFVIQGGDPTGT------GKGGKSIY   83 (169)
T ss_dssp             EEEEEET-----TEEEEEEECTTTSHHHHHHHHHHHHTT---TTTTEEEEEEETTTEEEEEETTSS------SSCCCBTT
T ss_pred             EEEEEeC-----ceeEEEEEeCCCCcHHHHHHHHHhhCC---ccceeeeccccceeeEeccccccc------cCCCcccc
Confidence            4566666     999999999999999999999999999   999999999999999999997642      11112323


Q ss_pred             cccchhhhccCCCCCCCCCCCCCceeeeecCCCCCCcchhhhhccCcceeeccccCCCCCcceEEEEcCCCCCCCCCCcE
Q 020718          180 TERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPELDASSLV  259 (322)
Q Consensus       180 ~~~~~~E~~~~~~~~~g~~~~~G~v~m~v~~~~~~~~~~~l~ar~G~l~m~~an~~p~s~gSqFfItl~~~p~LDg~~~V  259 (322)
                      ...+..|....     ..|+.+|+++|                         ++.++++++|||||++++.++||++|+|
T Consensus        84 ~~~~~~e~~~~-----l~h~~~g~ls~-------------------------~~~~p~s~~sqFfIt~~~~~~ld~~~tv  133 (169)
T d2b71a1          84 GEYFEDEINKE-----LKHTGAGILSM-------------------------SNNGPNTNSSQFFITLAPLPHLDGKHTI  133 (169)
T ss_dssp             BSCBCCCCCTT-----CCCCSTTEEEE-------------------------CCSSTTCBSSCEEEESSCCGGGTTTSCE
T ss_pred             ccccccccccc-----cCCCCcEEEEh-------------------------hhCCCCCCCCEEEEecCCcchhhhhcce
Confidence            33333332111     11345566555                         5677999999999999999999999999


Q ss_pred             EEEEEcCHHHHHHHhcCccccCCCCCCcchhhhhccccchhhcccCCCCCCccEEEeeee
Q 020718          260 VGRVLEGMEVAEKIGEVKTVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNCG  319 (322)
Q Consensus       260 FGrVi~Gmdvl~~I~~~~t~~~~~~~~~~~~~~~~gd~~~~~a~~~~~~P~~~V~I~~cG  319 (322)
                      ||||++|||||++|++++++++                         ++|.++|+|.+|+
T Consensus       134 FG~Vv~G~dvl~~I~~~~~~~~-------------------------~~P~~~i~I~~~~  168 (169)
T d2b71a1         134 FARVSKNMTCIENIASVQTTAT-------------------------NKPIFDLKILRTS  168 (169)
T ss_dssp             EEEEEECHHHHHHHHTSCBCTT-------------------------CCBSSCCEEEEEE
T ss_pred             eeEEeccHHHHHHHHhCCCCCC-------------------------CCCCCCeEEEEcc
Confidence            9999999999999999999887                         8999999999986

>d2a2na1 b.62.1.1 (A:483-646) Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-36  Score=261.52  Aligned_cols=157  Identities=24%  Similarity=0.403  Sum_probs=125.5

Q ss_pred             CCCCceEEEEEEeCCeeeeeEEEEecCCCCChhHHHHHHHhcCCCcccccCcEEEEeccCeeEeeCccccCcccccccCC
Q 020718           95 KDPTKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHGGVRSYGVDAELARRS  174 (322)
Q Consensus        95 ~~~~~~v~~di~i~g~~~GrIvIeL~~d~aP~tv~nF~~L~~~~~g~~Y~g~~f~Rvi~gfviQgGd~~~~~~~~~~~g~  174 (322)
                      ...+.++.|+++     +|+|+||||.+.||+||+||++||+.+   +|+|+.|||++++|++|+|++...       ..
T Consensus         6 ~~~~~~a~~~T~-----~G~i~ieL~~~~aP~tv~nF~~l~~~g---~Y~g~~f~rv~~~~~iq~G~~~~~-------~~   70 (164)
T d2a2na1           6 KRVSDSAIIHTS-----MGDIHTKLFPVECPKTVENFCVHSRNG---YYNGHTFHRIIKGFMIQTGDPTGT-------GM   70 (164)
T ss_dssp             CCCCSEEEEEET-----TEEEEEEECTTTCHHHHHHHHHHHHTT---TTTTCBCCEEETTTEEEECCTTSS-------SS
T ss_pred             ccccCEEEEEec-----eeEEEEEEcCCCChHHHHHHHHHHhCC---CcccceeeEEeeeeeEeecccccc-------cC
Confidence            445678999888     999999999999999999999999999   999999999999999999997642       11


Q ss_pred             CC-CCccccchhhhccCCCCCCCCCCCCCceeeeecCCCCCCcchhhhhccCcceeeccccCCCCCcceEEEEcCCCCCC
Q 020718          175 GS-NLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDSPEL  253 (322)
Q Consensus       175 gg-~~~~~~~~~E~~~~~~~~~g~~~~~G~v~m~v~~~~~~~~~~~l~ar~G~l~m~~an~~p~s~gSqFfItl~~~p~L  253 (322)
                      ++ ......+..+..     ....++.+|+++|                         ++.++++++|||||++++.++|
T Consensus        71 ~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~-------------------------~~~~~~s~~sqFfI~~~~~~~l  120 (164)
T d2a2na1          71 GGESIWGGEFEDEFH-----STLRHDRPYTLSM-------------------------ANAGSNTNGSQFFITVVPTPWL  120 (164)
T ss_dssp             CCCCTTSSCBCCCCC-----TTCCSCSSSEEEE-------------------------CCSSTTCBCSCEEEESSCCGGG
T ss_pred             CCceeeecccccccc-----cccccCccceeeh-------------------------hhcCCCCCcccceecccCcccc
Confidence            11 111122222211     1112344444444                         4567999999999999999999


Q ss_pred             CCCCcEEEEEEcCHHHHHHHhcCccccCCCCCCcchhhhhccccchhhcccCCCCCCccEEEeeeee
Q 020718          254 DASSLVVGRVLEGMEVAEKIGEVKTVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNCGL  320 (322)
Q Consensus       254 Dg~~~VFGrVi~Gmdvl~~I~~~~t~~~~~~~~~~~~~~~~gd~~~~~a~~~~~~P~~~V~I~~cG~  320 (322)
                      |++|+|||||++|||+|++|++++++..+                        ++|.++|+|.+|.+
T Consensus       121 d~~~tVFG~V~~G~dvv~~I~~~~~~~~~------------------------~~P~~~V~I~~v~i  163 (164)
T d2a2na1         121 DNKHTVFGRVTKGMEVVQRISNVKVNPKT------------------------DKPYEDVSIINITV  163 (164)
T ss_dssp             TTTSCEEEEEEECHHHHHHHHTSCBCTTT------------------------CCBSSCCBEEEEEE
T ss_pred             ccceeEEEEecChHHHHHHHHcCCcCCCC------------------------CCcCCCcEEEEEEE
Confidence            99999999999999999999999998643                        79999999999976

>d1w74a_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=2.2e-36  Score=261.81  Aligned_cols=154  Identities=24%  Similarity=0.428  Sum_probs=124.3

Q ss_pred             CceEEEEEEeCCeeeeeEEEEecCCCCChhHHHHHHHhcCCCc------------ccccCcEEEEeccCeeEeeCccccC
Q 020718           98 TKRVFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAG------------ISYRRKEFIKIMPNYVQHGGVRSYG  165 (322)
Q Consensus        98 ~~~v~~di~i~g~~~GrIvIeL~~d~aP~tv~nF~~L~~~~~g------------~~Y~g~~f~Rvi~gfviQgGd~~~~  165 (322)
                      +..+.|+++     .|+|+||||++.||+||+||++||+++++            .+|+|+.|||+++++++|||++.. 
T Consensus         3 ~~~~ti~T~-----~G~I~ieL~~d~aP~tv~nF~~L~~~~~~~~~~~~~~~~~~~~Y~g~~~~rv~~~~~iq~g~~~~-   76 (171)
T d1w74a_           3 TATATLHTN-----RGDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQGGDPTG-   76 (171)
T ss_dssp             SEEEEEEET-----TEEEEEEECTTTSHHHHHHHHHHHHTCSCCSSCCTTBSSSSCSSTTEEEEEEETTTEEEECCTTS-
T ss_pred             cEEEEEEEC-----CEEEEEEEcCCCChHHHHHHHHHHhcCCccccccccccccCceECCeecccccCCceeEcccccC-
Confidence            456778887     99999999999999999999999998743            369999999999999999999753 


Q ss_pred             cccccccCCCCCCccccchhhhccCCCCCCCCCCCCCceeeeecCCCCCCcchhhhhccCcceeeccccCCCCCcceEEE
Q 020718          166 VDAELARRSGSNLETERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVI  245 (322)
Q Consensus       166 ~~~~~~~g~gg~~~~~~~~~E~~~~~~~~~g~~~~~G~v~m~v~~~~~~~~~~~l~ar~G~l~m~~an~~p~s~gSqFfI  245 (322)
                            .+.++.  ...+.+|....     ..|+.+|+++|                         ++.++++++|||||
T Consensus        77 ------~~~~~~--~~~~~~e~~~~-----~~~~~~g~v~~-------------------------~~~~~~s~~sqFfI  118 (171)
T d1w74a_          77 ------TGRGGP--GYKFADEFHPE-----LQFDKPYLLAM-------------------------ANAGPGTNGSQFFI  118 (171)
T ss_dssp             ------SSSCCS--SCCBCCCCCTT-----CCSCSSSEEEE-------------------------CCSSTTCBSSCEEE
T ss_pred             ------CCCCCc--ccccccccCCC-----cCCCCCEEEEE-------------------------EecCCCCCCcceEe
Confidence                  222221  12333332211     12344555555                         45679999999999


Q ss_pred             EcCCCCCCCCCCcEEEEEE--cCHHHHHHHhcCccccCCCCCCcchhhhhccccchhhcccCCCCCCccEEEeeeee
Q 020718          246 VTKDSPELDASSLVVGRVL--EGMEVAEKIGEVKTVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNCGL  320 (322)
Q Consensus       246 tl~~~p~LDg~~~VFGrVi--~Gmdvl~~I~~~~t~~~~~~~~~~~~~~~~gd~~~~~a~~~~~~P~~~V~I~~cG~  320 (322)
                      ++++.|+||++|+|||||+  ||||||++|++++++.+                         ++|.++|+|.+|.+
T Consensus       119 t~~~~p~ld~~~tVFG~Vv~geGmdvl~~I~~~~~~~~-------------------------~~P~~~i~I~~v~i  170 (171)
T d1w74a_         119 TVGKTPHLNRRHTIFGEVIDAESQRVVEAISKTATDGN-------------------------DRPTDPVVIESITI  170 (171)
T ss_dssp             ESSCCGGGTTTSCEEEEECSHHHHHHHHHHHTSCBCTT-------------------------SCBSSCCEEEEEEE
T ss_pred             eccCCCccccccEEEEEEeccccHHHHHHHHcCCcCCC-------------------------CccCCCcEEEEEEE
Confidence            9999999999999999999  59999999999999887                         89999999999975

>d1lopa_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=5.4e-36  Score=257.92  Aligned_cols=155  Identities=23%  Similarity=0.329  Sum_probs=124.4

Q ss_pred             EEEEEEeCCeeeeeEEEEecCCCCChhHHHHHHHhcCCCcccccCcEEEEeccCeeEeeCccccCcccccccCCCCCCcc
Q 020718          101 VFLDISIDGKSAGRIVIGLYGDSAPAGAARFSSLVSGTAGISYRRKEFIKIMPNYVQHGGVRSYGVDAELARRSGSNLET  180 (322)
Q Consensus       101 v~~di~i~g~~~GrIvIeL~~d~aP~tv~nF~~L~~~~~g~~Y~g~~f~Rvi~gfviQgGd~~~~~~~~~~~g~gg~~~~  180 (322)
                      |-|+++     .|+|+||||.+.||+||+||++||+.+   +|+|+.|||++++|++|+||+...        .++...+
T Consensus         2 V~l~T~-----~G~i~ieL~~~~aP~t~~nF~~l~~~g---~Y~g~~fhrv~~~~~iq~G~~~~~--------~~~~~~~   65 (164)
T d1lopa_           2 VTFHTN-----HGDIVIKTFDDKAPETVKNFLDYCREG---FYNNTIFHRVINGFMIQGGGFEPG--------MKQKATK   65 (164)
T ss_dssp             EEEEET-----TEEEEEEECTTTSHHHHHHHHHHHHTT---TTTTEECCEEETTTEEEESSEETT--------TEECCCC
T ss_pred             EEEEeC-----CeEEEEEEcCCCCHHHHHHHHHHHHcc---CcCCceeeEEcCCceeeeeccccC--------CcCCccC
Confidence            556677     999999999999999999999999999   999999999999999999987532        1111233


Q ss_pred             ccchhhhccCCCCCCCCCCCCCceeeeecCCCCCCcchhhhhccCcceeeccccCCCCCcceEEEEcCCC--------CC
Q 020718          181 ERLMEEWKANNERCPGTKNLAGTVGIIVRDPSKPPPKIKLVARQGKLEIDQEEVGKDPNGTEFVIVTKDS--------PE  252 (322)
Q Consensus       181 ~~~~~E~~~~~~~~~g~~~~~G~v~m~v~~~~~~~~~~~l~ar~G~l~m~~an~~p~s~gSqFfItl~~~--------p~  252 (322)
                      +.+.+|..      .+++|.+|.++|+                        .+.++++++|||||++++.        ++
T Consensus        66 ~~~~~e~~------~~~~h~~g~l~~~------------------------~~~~~~~~~sqFfi~~~~~~~~~~~~~~~  115 (164)
T d1lopa_          66 EPIKNEAN------NGLKNTRGTLAMA------------------------RTQAPHSATAQFFINVVDNDFLNFSGESL  115 (164)
T ss_dssp             CCBCCCCC------SSCCCCTTEEEEC------------------------CCSSTTCBCSCEEEESSCCGGGSCCSSST
T ss_pred             CCcccccc------ccccceeeEEEEe------------------------ccCCCCCccceeeeeccccccccccCCCc
Confidence            44544432      2346677777762                        2446899999999999875        78


Q ss_pred             CCCCCcEEEEEEcCHHHHHHHhcCccccCCCCCCcchhhhhccccchhhcccCCCCCCccEEEeeeeecC
Q 020718          253 LDASSLVVGRVLEGMEVAEKIGEVKTVQENTGSPYFRVAKLIGDKRAVVAERGFNRPYSKVLVTNCGLME  322 (322)
Q Consensus       253 LDg~~~VFGrVi~Gmdvl~~I~~~~t~~~~~~~~~~~~~~~~gd~~~~~a~~~~~~P~~~V~I~~cG~l~  322 (322)
                      ||++|+|||+|++|||+|++|+++++++...                     ..++|.++|+|.++-++|
T Consensus       116 ~~~~ytvFG~Vv~G~dvl~~I~~~~t~~~~~---------------------~~~~P~~~v~I~~v~I~e  164 (164)
T d1lopa_         116 QGWGYCVFAEVVDGMDEVDKIKGVATGRSGM---------------------HQDVPKEDVIIESVTVSE  164 (164)
T ss_dssp             TTSCCCEEEEEEECHHHHHHHHTSCEEEETT---------------------EEEEESSCCEEEEEEECC
T ss_pred             CCCceeecCEEeccHHHHHHHHhCCcCCCCC---------------------cCCCcCCCeEEEEEEEeC
Confidence            9999999999999999999999999976410                     014999999999998876