Citrus Sinensis ID: 020732

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320--
Protein Sequence
MADTQEIEETPSEAHSGDASQKKQETRDEMLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAKELASLGYSSSNGNEKSNLDNLVKAVAGVTVISQHDQAKPSKGTKRREKRAQQEAAREQRIQEEQSNIVSDRTVEDEKLEKKLGPLGLTVNDIKPDGHCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVIPI
Secondary Structure (PSIPRED)
cccHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHcccccEEEEEccccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHcccEEEEEcccccEEEccccccccccccccEEEEEEccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHcccccccccccccHcccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccEEEEcccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHcHHHcccccccccccccccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHcccEEEEEcccccEEEccEccccccccccccEEEEEEHHcccccccccccccc
Coil and Loop (DISEMBL)
madtqeieetpseahsgdasqkKQETRDEMLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAKELASlgysssngneksnLDNLVKAVAGVTVisqhdqakpskgtkRREKRAQQEAAREQRIQEEQSNivsdrtvedeklekklgplgltvndikpdghclYRAVEDQLahlsggaspynFQQLRQMVAAYMRdhssdflpfylsenmigeesAQSQVERFENYCKEVESTAAWGGELELRALTHCLRKHImiysgsfpdvemgkeysnggsdssgsSIILSYHRhafglgehynsvipi
Flexible Loop (DISEMBL)
madtqeieetpseahsgdasqkkqETRDEMLSRHRkeisqlqnkETELKKaaakgskaeqkakkkqVEEEISRLSAKLREKHAKELAslgysssngneKSNLDNLVKAVAGVTVisqhdqakpskgtkrrEKRAQQEAAreqriqeeqsnivsdrtvedeklekklgplgltvndikPDGHCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEYSNGGSDSSGSSIILSYHRHAFglgehynsvipi
Low Complexity Region (SEG)
MADTQEIEETPSEAHSGDASQKKQETRDEMLSRHRKEISQLQNKETelkkaaakgskaeqkakkkqveeeISRLSAKLREKHAKELASLGYSSSNGNEKSNLDNLVKAVAGVTVISQHDQAKPSKGTKrrekraqqeaareqriqeeqSNIVSDRTVEDeklekklgplglTVNDIKPDGHCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEYsnggsdssgssIILSYHRHAFGLGEHYNSVIPI
Disordered region (IsUnstruct)
********************************************************************************************************LVKAVAGVTVI***************************************************GPLGLTVNDIKPDGHCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSSDFLPFYLSENMIG*******VERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPD******************IILSYHRHAFGLGEHYN*****
Disordered Region (DISOPRED)
**************************************************************************************************************************************************************DEKLEKKLGPLGLTVNDIKPDGHCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMG**********S**SIILSYHRHAFGLGEHYNSVIPI
Disordered Region (DISEMBL)
***********************************************************************SRLSAKLREKHAKELASLGYSSSNGNEKSNLDNLVKAVAGVTVIS****************************QEEQSNIVSDRTVEDEKLEKKLGPLGLTVNDIKPDGHCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKE*********GSSIILSYHRHAFGLGEHYNSVIPI
Disordered Region (DISPRO)
***************************DEMLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAKELASLGY****************************************************IQ****NIVSDRTVEDEKLEKKLGPLGLTVNDIKPDGHCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVIPI
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MADTQEIEETPSEAHSGDASQKKQETRDEMxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxELASLGYSSSNGNEKSNLDNLVKAVAGVTVISQHDQAKPSKGTKRREKRAQQEAAREQRIQEEQSNIVSDRTVEDEKLEKKLGPLGLTVNDIKPDGHCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVIPI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	322	2.2.26 [Sep-21-2011]
Q7ZV00	293	OTU domain-containing pro	yes	no	0.844	0.928	0.392	2e-44
Q5M8L0	294	OTU domain-containing pro	yes	no	0.826	0.904	0.375	2e-43
Q5ZIP6	302	OTU domain-containing pro	yes	no	0.838	0.894	0.376	1e-42
Q6GM06	294	OTU domain-containing pro	N/A	no	0.832	0.911	0.380	2e-42
Q8N6M0	293	OTU domain-containing pro	yes	no	0.816	0.897	0.368	7e-41
Q8K2H2	294	OTU domain-containing pro	yes	no	0.835	0.914	0.365	4e-39
Q6IE21	290	OTU domain-containing pro	no	no	0.822	0.913	0.336	5e-38
Q7L8S5	288	OTU domain-containing pro	no	no	0.807	0.902	0.328	2e-33
Q9UUK3	324	Ubiquitin thioesterase ot	yes	no	0.872	0.867	0.267	1e-24
P38747	307	OTU domain-containing pro	yes	no	0.878	0.921	0.271	2e-22

>sp|Q7ZV00|OTU6B_DANRE OTU domain-containing protein 6B OS=Danio rerio GN=otud6b PE=2 SV=1

 Score =  179 bits (455), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 120/306 (39%), Positives = 165/306 (53%), Gaps = 34/306 (11%)

Query: 25  ETRDEMLSR-HRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHA 83
           ET +E L++ HRKE   LQ K   +K A  K  K     ++KQ+ E+I++L A+L +KH 
Sbjct: 5   ETAEEQLAKQHRKEKKDLQAKIQSMKNAVPKNDKK----RRKQLTEDIAKLEAELSQKHE 60

Query: 84  KELASLGYSSSNGNEKSNLDNLVKAVAGVTVISQHDQAKPSK------GTKRREKRAQQE 137
            EL     SS        ++ +  A+  ++V +  +Q+ PSK        KRR+K+A  E
Sbjct: 61  NELKLQNTSS--------VEEVSDALDSMSVANHEEQSDPSKQSRTSKAQKRRDKKAALE 112

Query: 138 AAREQRIQE-EQSNIVSDRTVEDEKLEKKLGPLGLTVNDIKPDGHCLYRAVEDQLAHLSG 196
             RE RI E E  N+   R  E  KL +KL    L + +I  DGHC+YRAVE QL    G
Sbjct: 113 KEREMRIAEAEVENLSGSRHQEGLKLREKLVERHLQIKEISSDGHCMYRAVEHQLTE-RG 171

Query: 197 GASPYNFQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFENYCKEVESTAAW 256
            A     ++LR   A YMR H+ DF+PF  + N     +A    E FE YC +V  TAAW
Sbjct: 172 LA--LGLKELRDQTAQYMRSHADDFMPFLTNPNTGDMYTA----EEFEKYCSDVADTAAW 225

Query: 257 GGELELRALTHCLRKHIMIYSGSFPDVEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHY 316
           GG+LEL+AL+  L+  I +     P + +G+EY           I L Y RHA+GLGEHY
Sbjct: 226 GGQLELKALSQVLQLPIEVIQADSPCITIGEEYDK-------PKITLIYMRHAYGLGEHY 278

Query: 317 NSVIPI 322
           NSV P+
Sbjct: 279 NSVEPL 284

Danio rerio (taxid: 7955)

>sp|Q5M8L0|OTU6B_XENTR OTU domain-containing protein 6B OS=Xenopus tropicalis GN=otud6b PE=2 SV=1

 Score =  176 bits (446), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 111/296 (37%), Positives = 162/296 (54%), Gaps = 30/296 (10%)

Query: 30  MLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAKELASL 89
           ++ +HRKE   LQ K   +K +  K  K     ++KQ+ E+I++L A L  +H +EL + 
Sbjct: 13  LIKQHRKEKRDLQAKIQSMKNSVPKNDKK----RRKQLTEDIAKLEADLDVRHKEELEAF 68

Query: 90  GYSSSNGNEKSNLDNLVKAVAGVTVISQHDQA-----KPSKGTKRREKRAQQEAAREQRI 144
                   + S + N      GVT +   ++A     + SK  KRREK+A QE  R++RI
Sbjct: 69  AQKQPEPTQVSGITN------GVTSLDLGNEAPVQQPRQSKAQKRREKKAAQEKERDERI 122

Query: 145 QE-EQSNIVSDRTVEDEKLEKKLGPLGLTVNDIKPDGHCLYRAVEDQLAHLSGGASPYNF 203
            E E +N+   R +E +KL + L    L +  I  DGHC+YRA+E QL       +  N 
Sbjct: 123 AEAEIANLSGARHLESQKLARILAERELQIRQIPSDGHCMYRAIEHQLRERGNDLTVAN- 181

Query: 204 QQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFENYCKEVESTAAWGGELELR 263
             LR   A YM++H+ DFLPF L+ +  G+   Q   E F  YC ++ +T AWGG+LELR
Sbjct: 182 --LRSQTADYMQNHAEDFLPF-LTNSSTGDMYTQ---EEFLKYCTDIVNTPAWGGQLELR 235

Query: 264 ALTHCLRKHIMIYSGSFPDVEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSV 319
           AL+H L+  I +       + +G+EYS+        +I L Y RHA+GLGEHYNSV
Sbjct: 236 ALSHILKTAIEVIQAESSPIVIGEEYSS-------KAITLVYMRHAYGLGEHYNSV 284

Xenopus tropicalis (taxid: 8364)

>sp|Q5ZIP6|OTU6B_CHICK OTU domain-containing protein 6B OS=Gallus gallus GN=OTUD6B PE=2 SV=1

 Score =  173 bits (439), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 111/295 (37%), Positives = 162/295 (54%), Gaps = 25/295 (8%)

Query: 29  EMLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAKELAS 88
           +++ R R+E  +LQ K   +K A  K  K     ++KQ+ EE+++L A+L +KH +EL  
Sbjct: 17  QLVKRQRREKRELQAKIQGMKNAVPKNDKK----RRKQLAEEVAKLEAELEQKHKEELKQ 72

Query: 89  LGYSSSNGNEKSNLDNLVKAVAGVTVISQHDQ---AKPSKGTKRREKRAQQE-AAREQRI 144
           L  +     E++ +D++   VA   +  +  Q    + SK  KRREK+A  E    E+  
Sbjct: 73  LKEAMP---EQNKIDSIADGVANFELEGREQQIQHPRISKAQKRREKKAALEKEREERIA 129

Query: 145 QEEQSNIVSDRTVEDEKLEKKLGPLGLTVNDIKPDGHCLYRAVEDQLAHLSGGASPYNFQ 204
           + E  N+   R +E +KL   L    L +  I  DGHC+YRA+EDQL       + +   
Sbjct: 130 EAEIENLTGARHLESQKLASLLAARHLEIKQIPSDGHCMYRAIEDQL---KDHHNSWTVA 186

Query: 205 QLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFENYCKEVESTAAWGGELELRA 264
            LR   A Y+  H  DFLPF  + N  G+  ++   E FE YC ++ +TAAWGG+LELRA
Sbjct: 187 TLRNQTAKYIHSHFDDFLPFLTNPN-TGDMYSK---EEFEKYCDDIANTAAWGGQLELRA 242

Query: 265 LTHCLRKHIMIYSGSFPDVEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSV 319
           L+H L+  I +     P + +G+EY       SG  IIL Y RHA+GLGEHYNSV
Sbjct: 243 LSHILQTPIEVVQMDSPSIIVGEEY-------SGKPIILVYMRHAYGLGEHYNSV 290

Gallus gallus (taxid: 9031)

>sp|Q6GM06|OTU6B_XENLA OTU domain-containing protein 6B OS=Xenopus laevis GN=otud6b PE=2 SV=1

 Score =  172 bits (437), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 112/294 (38%), Positives = 166/294 (56%), Gaps = 26/294 (8%)

Query: 30  MLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAKELASL 89
           ++ + RKE  ++Q K   +K +  K  K     ++KQ+ E+I++L A++  +H +EL +L
Sbjct: 13  LIKQQRKEKKEVQAKIQCMKNSVPKNDKK----RRKQMTEDIAKLEAEVEARHKEELEAL 68

Query: 90  GYSSSNGNEKSNLDNLVKAVAGVTVISQHDQAKP--SKGTKRREKRAQQEAAREQRIQE- 146
               +   + S++ N    V  + + S+    +P  SK  KRREK+A QE  R+ RI E 
Sbjct: 69  AQKPTEPTQVSSITN---GVTSLDLGSEEPVQQPRVSKAQKRREKKAAQEKERDDRIAEA 125

Query: 147 EQSNIVSDRTVEDEKLEKKLGPLGLTVNDIKPDGHCLYRAVEDQLAHLSGGASPYNFQQL 206
           E +N+   R +E +KL + L    L +  I  DGHC+YRA+E QL       +  N   L
Sbjct: 126 EIANLSGARHLESQKLAQILAERELQIRQIPSDGHCMYRAIEHQLNEQGNSLTVAN---L 182

Query: 207 RQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFENYCKEVESTAAWGGELELRALT 266
           R   A YM+  + DFLPF L+ +  G+   Q   E F+ YC ++ +T AWGG+LELRAL+
Sbjct: 183 RSQTADYMQKRAEDFLPF-LTNSSTGDMYTQ---EEFQKYCTDIVNTPAWGGQLELRALS 238

Query: 267 HCLRKHI-MIYSGSFPDVEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSV 319
           H L+  I +I + S P V +G+EYSN         I L Y RHA+GLGEHYNSV
Sbjct: 239 HILKTPIEVIQAESLPIV-IGEEYSN-------KPITLVYMRHAYGLGEHYNSV 284

Xenopus laevis (taxid: 8355)

>sp|Q8N6M0|OTU6B_HUMAN OTU domain-containing protein 6B OS=Homo sapiens GN=OTUD6B PE=1 SV=1

 Score =  167 bits (424), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 106/288 (36%), Positives = 158/288 (54%), Gaps = 25/288 (8%)

Query: 33  RHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAKELASLGYS 92
           RHRKE  +LQ K   +K A  K  K     ++KQ+ E++++L  ++ +KH +EL  L  +
Sbjct: 18  RHRKEKKELQAKIQGMKNAVPKNDKK----RRKQLTEDVAKLEKEMEQKHREELEQLKLT 73

Query: 93  SSNGNEKSNLDNLVKAVAGVTVISQHDQAKPSKGTKRREKRAQQE-AAREQRIQEEQSNI 151
           +    +++ +D++  AV    ++ ++   + SK  KRREK+A  E    E+  + E  N+
Sbjct: 74  T----KENKIDSV--AVNISNLVLENQPPRISKAQKRREKKAALEKEREERIAEAEIENL 127

Query: 152 VSDRTVEDEKLEKKLGPLGLTVNDIKPDGHCLYRAVEDQLAHLSGGASPYNFQQLRQMVA 211
              R +E EKL + L    L +  I  DGHC+Y+A+EDQL       +      LR   A
Sbjct: 128 TGARHMESEKLAQILAARQLEIKQIPSDGHCMYKAIEDQLKEKDCALT---VVALRSQTA 184

Query: 212 AYMRDHSSDFLPFYLSENMIGEESAQSQVERFENYCKEVESTAAWGGELELRALTHCLRK 271
            YM+ H  DFLPF  + N           E F+ YC+++ +TAAWGG+LELRAL+H L+ 
Sbjct: 185 EYMQSHVEDFLPFLTNPNT----GDMYTPEEFQKYCEDIVNTAAWGGQLELRALSHILQT 240

Query: 272 HIMIYSGSFPDVEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSV 319
            I I     P + +G+EYS          +IL Y RHA+GLGEHYNSV
Sbjct: 241 PIEIIQADSPPIIVGEEYSK-------KPLILVYMRHAYGLGEHYNSV 281

Homo sapiens (taxid: 9606)

>sp|Q8K2H2|OTU6B_MOUSE OTU domain-containing protein 6B OS=Mus musculus GN=Otud6b PE=2 SV=1

 Score =  162 bits (409), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 107/293 (36%), Positives = 160/293 (54%), Gaps = 24/293 (8%)

Query: 28  DEMLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAKELA 87
           ++++ RHRKE  +LQ K   +K A  K  K     ++KQ+ E++++L  ++ +KH +EL 
Sbjct: 13  EQLVRRHRKEKKELQAKIQGMKNAVPKNDKK----RRKQLTEDVAKLEREMEQKHREELE 68

Query: 88  SLGYSSSNGNEKSNLDNLVKAVAGVTVISQHDQAKPSKGTKRREKRAQQE-AAREQRIQE 146
            L   +      S +D++  AV    ++ ++   + SK  KRREK+A  E    E+  + 
Sbjct: 69  QLKQLTFKD---SKIDSV--AVNISNLVLENQPPRISKAQKRREKKAALEKEREERIAEA 123

Query: 147 EQSNIVSDRTVEDEKLEKKLGPLGLTVNDIKPDGHCLYRAVEDQLAHLSGGASPYNFQQL 206
           E  N+   R +E EKL + L    L +  I  DGHC+Y A+EDQL       +      L
Sbjct: 124 EIENLSGARHLESEKLAQILAARELEIKQIPSDGHCMYGALEDQLREQDCALT---VASL 180

Query: 207 RQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFENYCKEVESTAAWGGELELRALT 266
           R+  A YM+ HS DFLPF L+    G+       E F  YC ++ +TAAWGG+LELRAL+
Sbjct: 181 RRQTAEYMQTHSDDFLPF-LTNPSTGDMYTP---EEFGKYCDDIVNTAAWGGQLELRALS 236

Query: 267 HCLRKHIMIYSGSFPDVEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSV 319
           H L+  I I     P + +G+EY         + ++L Y RHA+GLGEHYNSV
Sbjct: 237 HILQTPIEILQADAPPIIVGEEYPR-------NPLVLVYMRHAYGLGEHYNSV 282

Mus musculus (taxid: 10090)

>sp|Q6IE21|OTU6A_MOUSE OTU domain-containing protein 6A OS=Mus musculus GN=Otud6a PE=2 SV=1

 Score =  158 bits (399), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 99/294 (33%), Positives = 156/294 (53%), Gaps = 29/294 (9%)

Query: 30  MLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAKELASL 89
           ++ RH +E  +LQ     LK +  K  K     ++KQ+  +ISRL A++ ++H +EL   
Sbjct: 11  VIRRHYREKRELQAHIQTLKASVPKNDKG----RRKQMLADISRLEAEMEQRHKQELEKF 66

Query: 90  GYSSSNGNEKSNLDNLVKAVAGVTVISQHDQAKPSKGTKRREKRAQQEAAREQRIQEEQS 149
           G      N  S++D++   +  + +  ++   +P K  KRR++RA QE   ++R+   Q+
Sbjct: 67  G-----ENPDSSVDSVTADLEKMNL--ENMPPRPPKAQKRRDRRAHQERRHQERMPAAQA 119

Query: 150 -NIVSDRTVEDEKLEKKLGPLGLTVNDIKPDGHCLYRAVEDQLAHLSGGASPYNFQQLRQ 208
             + ++R  E+EK+   LG   L +  I  DGHC+YRA++DQL            + LR 
Sbjct: 120 EQLAANRREEEEKVAAILGAKNLEMKTIPADGHCMYRAIQDQLVF------SVTIESLRY 173

Query: 209 MVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFENYCKEVESTAAWGGELELRALTHC 268
             A YMR H  DFLPF+ +E   G    +   E F  YC ++   A+WGG+LELRAL+H 
Sbjct: 174 RTAYYMRKHIDDFLPFF-TEPEAGNFYTR---EDFLRYCDDIVHNASWGGQLELRALSHV 229

Query: 269 LRKHIMIYSGSFPDVEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVIPI 322
           L+  I +   + P + +G+EY+          + L Y  +A   GEHYNSV PI
Sbjct: 230 LQTPIEVVQANSPTIVIGEEYTR-------KPVTLVYLHYACDFGEHYNSVKPI 276

Mus musculus (taxid: 10090)

>sp|Q7L8S5|OTU6A_HUMAN OTU domain-containing protein 6A OS=Homo sapiens GN=OTUD6A PE=2 SV=1

 Score =  143 bits (361), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 98/298 (32%), Positives = 159/298 (53%), Gaps = 38/298 (12%)

Query: 30  MLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAKELASL 89
           +L RH++E  +LQ +   LK +  K  K     K+KQ+ ++++R+ A++ +KH +EL   
Sbjct: 11  ILRRHQRERQELQAQIRSLKNSVPKTDKT----KRKQLLQDVARMEAEMAQKHRQELEKF 66

Query: 90  GYSSSNGNEKSNLDNLVKAVAGVTVISQHDQAKPSKGTKRREKRAQQEAAREQR----IQ 145
                   + S+++++V+ +A + +     + +P + +K   KR + E+   +R     Q
Sbjct: 67  -------QDDSSIESVVEDLAKMNL-----ENRPPRSSKAHRKRERMESEERERQESIFQ 114

Query: 146 EEQS-NIVSDRTVEDEKLEKKLGPLGLTVNDIKPDGHCLYRAVEDQLAHLSGGASPYNFQ 204
            E S ++   +  E+EKL   LG  GL +  I  DGHC+YRA++DQL          + +
Sbjct: 115 AEMSEHLAGFKREEEEKLAAILGARGLEMKAIPADGHCMYRAIQDQLVF------SVSVE 168

Query: 205 QLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFENYCKEVESTAAWGGELELRA 264
            LR   A+YM+ H  +FLPF+ +     E S     + F  YC  +  T AWGG+LELRA
Sbjct: 169 MLRCRTASYMKKHVDEFLPFFSNP----ETSDSFGYDDFMIYCDNIVRTTAWGGQLELRA 224

Query: 265 LTHCLRKHIMIYSGSFPDVEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVIPI 322
           L+H L+  I +     P + +G+EY           IIL Y R+A+ LGEHYNSV P+
Sbjct: 225 LSHVLKTPIEVIQADSPTLIIGEEYVK-------KPIILVYLRYAYSLGEHYNSVTPL 275

Homo sapiens (taxid: 9606)

>sp|Q9UUK3|OTU2_SCHPO Ubiquitin thioesterase otu2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=otu2 PE=4 SV=1

 Score =  114 bits (284), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 86/321 (26%), Positives = 159/321 (49%), Gaps = 40/321 (12%)

Query: 21  QKKQETRDEMLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLRE 80
           ++K +  +E+LS+ R+E  +LQ+K T L+K   +G+K +++A    ++++IS++ A L +
Sbjct: 19  KRKSKKMEELLSKQREECKELQSKITNLRKQLKEGNKKQKRA----LQQKISQMEADLSQ 74

Query: 81  KHAKELASLGYSSSNGNEKSN---LDNLVKAVAGVTVIS-------------QHDQAKPS 124
           KHA E   L       NE      L+ L++ +    + +             ++   +P 
Sbjct: 75  KHATERQKLDKGDEETNETQQEDLLNTLLQQMEDTKITTAEKSSVQSSLNTKENTPQQPK 134

Query: 125 KGTKRREKRAQQEAAREQRIQEEQSNIVSDRTV-----EDEKLEKKLGPLGLTVNDIKPD 179
           K   R+++R ++  A E +   EQ+ + S++       E +K  K L   GL   DI  D
Sbjct: 135 KSRNRQKERLERRKA-EMKKMSEQAELESEKMADLKNEEKKKFSKILEEAGLVAVDIPAD 193

Query: 180 GHCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQ 239
           G+CL+ ++  QL +        N Q LR   A Y+  H   F  F     ++ EES   +
Sbjct: 194 GNCLFASISHQLNYHHNVK--LNSQALRNKSADYVLKHCEQFEGF-----LLDEESG--E 244

Query: 240 VERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEYSNGGSDSSGS 299
           V    +YC E+ + + WG ++E++AL + L   + +Y+   P ++      N  +     
Sbjct: 245 VLPVSDYCNEIRNNSKWGSDIEIQALANSLEVPVHVYNTEGPVLKF-----NPSTVKFEK 299

Query: 300 SIILSYHRHAFGLGEHYNSVI 320
            + ++Y++H FGLG HYNS++
Sbjct: 300 PLCIAYYQHLFGLGAHYNSLL 320

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P38747|OTU2_YEAST OTU domain-containing protein 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=OTU2 PE=1 SV=1

 Score =  106 bits (265), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 88/324 (27%), Positives = 154/324 (47%), Gaps = 41/324 (12%)

Query: 16  SGDASQKKQETRDEMLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLS 75
           +G  S +  E  +++L+RHRKE   LQNK T +KK A        K+K+K+V  +   L 
Sbjct: 2   TGMESGENLENMEDILARHRKENKDLQNKITGMKKQAT-------KSKRKEVNSKCLDLQ 54

Query: 76  AKLREKHAKELASLGYSSSNGNEKSNLDNLV--KAVAGVTV-------ISQHDQAKPSKG 126
            KL+ K   E+     +++   +    D +   K +  +++        +   Q +    
Sbjct: 55  DKLKTKQENEIRDWKIANNEVFDAEQEDEVTPEKLLEQLSISRDEKEQQNVPVQQQQQGQ 114

Query: 127 TKRREKRAQQEAAREQ----RIQEEQSNIVSD----RTVEDEKLEKKLGPLGLTVNDIKP 178
           TK+R  R ++  A+      +++EE +   S     + +E E +++      L   DI+P
Sbjct: 115 TKKRRNRQKERLAKRDAAIAKMKEEAALEASKQPDLKKMEQESIDQLCELKKLKQFDIQP 174

Query: 179 DGHCLYRAVEDQLAHLSGGAS---PYNFQQLRQMVAAYMRDHSSDFLPFYLSENMIGEES 235
           DGHCL+ ++ DQL             +  +LR +   Y+++H  DF+P+   E  +    
Sbjct: 175 DGHCLFASILDQLKLRHDPKKLDQDMDVMKLRWLSCNYVQEHRDDFIPYLFDEETM---- 230

Query: 236 AQSQVERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEYSNGGSD 295
              +++  + Y KE+E TA WGGE+E+ AL+H     I I     P     + Y+  G  
Sbjct: 231 ---KMKDIDEYTKEMEHTAQWGGEIEILALSHVFDCPISILMSGRP----IQVYNECG-- 281

Query: 296 SSGSSIILSYHRHAFGLGEHYNSV 319
                + L Y++H++ LGEHYNS+
Sbjct: 282 -KNPELKLVYYKHSYALGEHYNSL 304

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	322
255571935	325	OTU domain-containing protein 6B, putati	0.990	0.981	0.771	1e-135
449436806	319	PREDICTED: OTU domain-containing protein	0.990	1.0	0.736	1e-135
224131236	326	predicted protein [Populus trichocarpa]	0.996	0.984	0.745	1e-134
449520871	325	PREDICTED: LOW QUALITY PROTEIN: OTU doma	0.934	0.926	0.759	1e-133
388521917	326	unknown [Medicago truncatula]	0.934	0.923	0.754	1e-131
357511169	335	OTU domain-containing protein 6B [Medica	0.934	0.898	0.754	1e-131
356505520	324	PREDICTED: LOW QUALITY PROTEIN: OTU doma	0.996	0.990	0.746	1e-130
363807892	324	uncharacterized protein LOC100780620 [Gl	0.996	0.990	0.730	1e-129
225436773	325	PREDICTED: OTU domain-containing protein	0.990	0.981	0.752	1e-124
89953403	327	Fgenesh protein 81 [Beta vulgaris]	0.996	0.981	0.738	1e-124

>gi|255571935|ref|XP_002526909.1| OTU domain-containing protein 6B, putative [Ricinus communis] gi|223533728|gb|EEF35462.1| OTU domain-containing protein 6B, putative [Ricinus communis]

 Score =  488 bits (1255), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 247/320 (77%), Positives = 283/320 (88%), Gaps = 1/320 (0%)

Query: 3   DTQEIEETPSEAHSGDASQKKQETRDEMLSRHRKEISQLQNKETELKKAAAKGSKAEQKA 62
           DTQ IEETP EA   +ASQK+QE RDEMLSRHRKEI+QLQNKE ELKKAAAKGSKAEQK+
Sbjct: 2   DTQVIEETPFEAIQTNASQKQQEARDEMLSRHRKEIAQLQNKEIELKKAAAKGSKAEQKS 61

Query: 63  KKKQVEEEISRLSAKLREKHAKELASLGYSSSNGNEKSNLDNLVKAVAGVTVISQHDQAK 122
           KKKQVEE+IS+LSAKL+EKHA+ELASLGY+S  GNEKSNLDNLVKA+AGV+V +Q + AK
Sbjct: 62  KKKQVEEQISQLSAKLKEKHAEELASLGYNSITGNEKSNLDNLVKAIAGVSVTNQPELAK 121

Query: 123 PSKGTKRREKRAQQEAAREQRIQEEQSNIVSDRTVEDEKLEKKLGPLGLTVNDIKPDGHC 182
            SKG KRR KRAQQEA REQRIQEEQSN+VSDR +E+EKL+ KL PLGLTVNDIKPDGHC
Sbjct: 122 VSKGAKRRGKRAQQEAEREQRIQEEQSNLVSDRLIENEKLKGKLEPLGLTVNDIKPDGHC 181

Query: 183 LYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVER 242
           LYRA+EDQL+ LSGG+SPY +Q LR+MVAAYMR+H+SDFLPF+LS+N I  +S  S  +R
Sbjct: 182 LYRAIEDQLSVLSGGSSPYTYQDLRKMVAAYMREHASDFLPFFLSDNTIEGDSDDSLADR 241

Query: 243 FENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEYSN-GGSDSSGSSI 301
           FENYCKEVEST+AWGG+LEL ALTHCL KHI I+SGSFPDVEMGKEY N  G+ SS +SI
Sbjct: 242 FENYCKEVESTSAWGGQLELGALTHCLTKHIKIFSGSFPDVEMGKEYKNDDGAGSSNTSI 301

Query: 302 ILSYHRHAFGLGEHYNSVIP 321
           +LSYH+HAFGLGEHYNSV+P
Sbjct: 302 LLSYHKHAFGLGEHYNSVVP 321

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449436806|ref|XP_004136183.1| PREDICTED: OTU domain-containing protein 6B-like [Cucumis sativus]

 Score =  487 bits (1253), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 237/322 (73%), Positives = 280/322 (86%), Gaps = 3/322 (0%)

Query: 1   MADTQEIEETPSEAHSGDASQKKQETRDEMLSRHRKEISQLQNKETELKKAAAKGSKAEQ 60
           M DTQ+ E+T S      ASQ+  E+RDEMLS  RKEISQLQNKE ELKKAAA+GSKAEQ
Sbjct: 1   MEDTQQTEDTSSGTVPDKASQENHESRDEMLSLCRKEISQLQNKEIELKKAAARGSKAEQ 60

Query: 61  KAKKKQVEEEISRLSAKLREKHAKELASLGYSSSNGNEKSNLDNLVKAVAGVTVISQHDQ 120
           K KKKQVEEEIS+LS KL++K A+ELASLG+S+SNGNEK N+DNLVKA+AGV++ +Q D 
Sbjct: 61  KVKKKQVEEEISQLSVKLKKKQAEELASLGFSNSNGNEK-NIDNLVKAIAGVSMAAQSDH 119

Query: 121 AKPSKGTKRREKRAQQEAAREQRIQEEQSNIVSDRTVEDEKLEKKLGPLGLTVNDIKPDG 180
           +KPSK T+R+EKRAQQEA R++RI+EEQSNIVSDR +E+E LEKKL PLGLTVN+IKPDG
Sbjct: 120 SKPSKSTRRKEKRAQQEAERDRRIEEEQSNIVSDRMIENEHLEKKLEPLGLTVNEIKPDG 179

Query: 181 HCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQV 240
           HCLYRAVE+QLA+LSGG+SPYN+QQLR+MVAAYMRDHS+D++PF+LS+N +   S  S  
Sbjct: 180 HCLYRAVENQLAYLSGGSSPYNYQQLREMVAAYMRDHSTDYMPFFLSDNGVEGNSNSSLA 239

Query: 241 ERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEYSNGGSDSSGSS 300
           ERFENYCKEVESTAAWGG+LEL ALTHCLRKHIMI+SGSFPDVEMGKEY + G  +  SS
Sbjct: 240 ERFENYCKEVESTAAWGGQLELGALTHCLRKHIMIFSGSFPDVEMGKEYKSEGVIN--SS 297

Query: 301 IILSYHRHAFGLGEHYNSVIPI 322
           I LSYH+HAFGLGEHYNSV+P+
Sbjct: 298 IRLSYHKHAFGLGEHYNSVVPV 319

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224131236|ref|XP_002321034.1| predicted protein [Populus trichocarpa] gi|222861807|gb|EEE99349.1| predicted protein [Populus trichocarpa]

 Score =  483 bits (1244), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 240/322 (74%), Positives = 286/322 (88%), Gaps = 1/322 (0%)

Query: 1   MADTQEIEETPSEAHSGDASQKKQETRDEMLSRHRKEISQLQNKETELKKAAAKGSKAEQ 60
           M+D QEI++ P+EA   + SQK++E+RDEMLSRHRKEI QLQNKE E+KKAAAKGSKAEQ
Sbjct: 1   MSDAQEIQDQPTEAIPANVSQKEEESRDEMLSRHRKEIRQLQNKEIEMKKAAAKGSKAEQ 60

Query: 61  KAKKKQVEEEISRLSAKLREKHAKELASLGYSSSNGNEKSNLDNLVKAVAGVTVISQHDQ 120
           KAKKK VEEE+S+LSAKL+EKHA+ELASLGY+S+NGNE SNLDNLVKAVAGV+V +Q + 
Sbjct: 61  KAKKKLVEEEVSQLSAKLKEKHAEELASLGYNSTNGNESSNLDNLVKAVAGVSVTNQPEH 120

Query: 121 AKPSKGTKRREKRAQQEAAREQRIQEEQSNIVSDRTVEDEKLEKKLGPLGLTVNDIKPDG 180
           +KPSK  KRR KRAQQEA REQRIQEEQSN+ SDR +EDEKLE+KL PLGLT+N+IKPDG
Sbjct: 121 SKPSKSAKRRGKRAQQEAEREQRIQEEQSNLESDRMIEDEKLERKLEPLGLTINEIKPDG 180

Query: 181 HCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQV 240
           HCLYRAVEDQLA LSGG++PY++Q+LR++VAAYMR++S DFLPF+LS+ +  E S  S  
Sbjct: 181 HCLYRAVEDQLALLSGGSAPYDYQELRKLVAAYMRENSPDFLPFFLSDTITEEHSDHSLS 240

Query: 241 ERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEY-SNGGSDSSGS 299
           +RFENYCKEVEST AWGG+LEL ALTHCLR+HI I+SGSFPDVEMGKEY S+GG+ SS +
Sbjct: 241 DRFENYCKEVESTTAWGGQLELGALTHCLRRHIKIFSGSFPDVEMGKEYKSDGGAGSSNA 300

Query: 300 SIILSYHRHAFGLGEHYNSVIP 321
           SI+LSYH+HAFGLGEHYNSV+P
Sbjct: 301 SIMLSYHKHAFGLGEHYNSVVP 322

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449520871|ref|XP_004167456.1| PREDICTED: LOW QUALITY PROTEIN: OTU domain-containing protein 6B-like [Cucumis sativus]

 Score =  482 bits (1241), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 231/304 (75%), Positives = 272/304 (89%), Gaps = 3/304 (0%)

Query: 19  ASQKKQETRDEMLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKL 78
           ASQ+  E+RDEMLSRHRKEISQLQNKE ELKKAAA+GSKAEQK K KQVEEEIS+LS KL
Sbjct: 25  ASQENHESRDEMLSRHRKEISQLQNKEIELKKAAARGSKAEQKVKXKQVEEEISQLSVKL 84

Query: 79  REKHAKELASLGYSSSNGNEKSNLDNLVKAVAGVTVISQHDQAKPSKGTKRREKRAQQEA 138
           ++K A+ELASLG+S+SNGNEK N+DNLVKA+AGV++ +Q D +KPSK T+R+EKRAQQEA
Sbjct: 85  KKKQAEELASLGFSNSNGNEK-NIDNLVKAIAGVSMAAQSDHSKPSKSTRRKEKRAQQEA 143

Query: 139 AREQRIQEEQSNIVSDRTVEDEKLEKKLGPLGLTVNDIKPDGHCLYRAVEDQLAHLSGGA 198
            R++RI+EEQSNIVSDR +E+E LEKKL PLGLTVN+IKPDGHCLYRAVE+QLA+LSGG+
Sbjct: 144 ERDRRIEEEQSNIVSDRMIENEHLEKKLEPLGLTVNEIKPDGHCLYRAVENQLAYLSGGS 203

Query: 199 SPYNFQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFENYCKEVESTAAWGG 258
           SPYN+QQLR+MVAAYMRDHS+D++PF+LS+N +   S  S  ERFENYCKEVESTAAWGG
Sbjct: 204 SPYNYQQLREMVAAYMRDHSTDYMPFFLSDNGVEGNSNSSLAERFENYCKEVESTAAWGG 263

Query: 259 ELELRALTHCLRKHIMIYSGSFPDVEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNS 318
           +LEL ALTHCLRKHIMI+SGSFPDVEMGKEY + G  +  SSI LSYH+HAFGLGEHYNS
Sbjct: 264 QLELGALTHCLRKHIMIFSGSFPDVEMGKEYKSEGVIN--SSIRLSYHKHAFGLGEHYNS 321

Query: 319 VIPI 322
           V+P+
Sbjct: 322 VVPV 325

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388521917|gb|AFK49020.1| unknown [Medicago truncatula]

 Score =  473 bits (1217), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 228/302 (75%), Positives = 265/302 (87%), Gaps = 1/302 (0%)

Query: 22  KKQETRDEMLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREK 81
           K++ETRDE+L+RHRKEISQLQ KE E+KK AA+GSKAEQKAKK+QVEEE+S+LSAKL+EK
Sbjct: 23  KEEETRDEILARHRKEISQLQKKEVEMKKQAARGSKAEQKAKKRQVEEEVSQLSAKLKEK 82

Query: 82  HAKELASLGYSSSNGNEKSNLDNLVKAVAGVTVISQHDQAKPSKGTKRREKRAQQEAARE 141
            AKEL++LGYSS  GNEKSN+DNLVKA+AGV+V SQ +  K SK  +RR+KRAQQEA RE
Sbjct: 83  QAKELSALGYSSGIGNEKSNMDNLVKAIAGVSVSSQPENTKVSKAKQRRDKRAQQEAERE 142

Query: 142 QRIQEEQSNIVSDRTVEDEKLEKKLGPLGLTVNDIKPDGHCLYRAVEDQLAHLSGGASPY 201
           QRIQ EQ++I+SDRTVE+EKLE+KL PLGLTV +IKPDGHCLYRAVE+QLAHL GG SPY
Sbjct: 143 QRIQAEQNDIISDRTVENEKLERKLKPLGLTVCEIKPDGHCLYRAVENQLAHLFGGKSPY 202

Query: 202 NFQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFENYCKEVESTAAWGGELE 261
            FQQLR+M AAYM  H+SDFLPF LSEN+I  +S +S  ++FENYCKEVESTA WGG+LE
Sbjct: 203 TFQQLREMAAAYMMKHTSDFLPFCLSENLIEGDSDESIAQKFENYCKEVESTAIWGGQLE 262

Query: 262 LRALTHCLRKHIMIYSGSFPDVEMGKEY-SNGGSDSSGSSIILSYHRHAFGLGEHYNSVI 320
           L ALTHCL+KHIMI+SGSFPDVEMGKEY S  G  SSGSSI+LSYH HAFGLGEHYNSV+
Sbjct: 263 LGALTHCLKKHIMIFSGSFPDVEMGKEYKSADGIGSSGSSIMLSYHMHAFGLGEHYNSVV 322

Query: 321 PI 322
           PI
Sbjct: 323 PI 324

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357511169|ref|XP_003625873.1| OTU domain-containing protein 6B [Medicago truncatula] gi|355500888|gb|AES82091.1| OTU domain-containing protein 6B [Medicago truncatula]

 Score =  472 bits (1215), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 228/302 (75%), Positives = 265/302 (87%), Gaps = 1/302 (0%)

Query: 22  KKQETRDEMLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREK 81
           K++ETRDE+L+RHRKEISQLQ KE E+KK AA+GSKAEQKAKK+QVEEE+S+LSAKL+EK
Sbjct: 32  KEEETRDEILARHRKEISQLQKKEVEMKKQAARGSKAEQKAKKRQVEEEVSQLSAKLKEK 91

Query: 82  HAKELASLGYSSSNGNEKSNLDNLVKAVAGVTVISQHDQAKPSKGTKRREKRAQQEAARE 141
            AKEL++LGYSS  GNEKSN+DNLVKA+AGV+V SQ +  K SK  +RR+KRAQQEA RE
Sbjct: 92  QAKELSALGYSSGIGNEKSNMDNLVKAIAGVSVSSQPENTKVSKAKQRRDKRAQQEAERE 151

Query: 142 QRIQEEQSNIVSDRTVEDEKLEKKLGPLGLTVNDIKPDGHCLYRAVEDQLAHLSGGASPY 201
           QRIQ EQ++ +SDRTVE+EKLE+KL PLGLTV +IKPDGHCLYRAVE+QLAHL GG SPY
Sbjct: 152 QRIQAEQNDNISDRTVENEKLERKLKPLGLTVCEIKPDGHCLYRAVENQLAHLFGGKSPY 211

Query: 202 NFQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFENYCKEVESTAAWGGELE 261
            FQQLR+M AAYMR H+SDFLPF LSEN+I  +S +S  ++FENYCKEVESTA WGG+LE
Sbjct: 212 TFQQLREMAAAYMRKHTSDFLPFCLSENLIEGDSDESIAQKFENYCKEVESTAIWGGQLE 271

Query: 262 LRALTHCLRKHIMIYSGSFPDVEMGKEY-SNGGSDSSGSSIILSYHRHAFGLGEHYNSVI 320
           L ALTHCL+KHIMI+SGSFPDVEMGKEY S  G  SSGSSI+LSYH HAFGLGEHYNSV+
Sbjct: 272 LGALTHCLKKHIMIFSGSFPDVEMGKEYKSADGIGSSGSSIMLSYHMHAFGLGEHYNSVV 331

Query: 321 PI 322
           PI
Sbjct: 332 PI 333

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356505520|ref|XP_003521538.1| PREDICTED: LOW QUALITY PROTEIN: OTU domain-containing protein 6B-like [Glycine max]

 Score =  469 bits (1208), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 241/323 (74%), Positives = 278/323 (86%), Gaps = 2/323 (0%)

Query: 1   MADTQEIEETPSEAHSGDASQKKQ-ETRDEMLSRHRKEISQLQNKETELKKAAAKGSKAE 59
           M DTQEIEE   E    D + KKQ ET DE LSRHRKEI QLQ KE E+KKAAA+GSKAE
Sbjct: 1   MEDTQEIEEQGHEEVISDKTFKKQQETLDEXLSRHRKEILQLQKKEVEMKKAAARGSKAE 60

Query: 60  QKAKKKQVEEEISRLSAKLREKHAKELASLGYSSSNGNEKSNLDNLVKAVAGVTVISQHD 119
           QKAKKKQVEEE+S+LSAKL+E  AKELA+LGY+SSNGNEKSNLD+LVKA+AGV+V SQ +
Sbjct: 61  QKAKKKQVEEEVSQLSAKLKENQAKELAALGYNSSNGNEKSNLDSLVKAIAGVSVASQPE 120

Query: 120 QAKPSKGTKRREKRAQQEAAREQRIQEEQSNIVSDRTVEDEKLEKKLGPLGLTVNDIKPD 179
             K SK  +RREKRAQQEA REQRIQ EQS+I+SDR +E+EKLEKKL PLGLTV +IKPD
Sbjct: 121 HTKVSKAKQRREKRAQQEAEREQRIQSEQSDIISDRMIENEKLEKKLKPLGLTVCEIKPD 180

Query: 180 GHCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQ 239
           GHCLYRAVEDQLA LSGG SPY +Q LR+MVAAYMR+H+SDFLPF+LSEN+I ++S +S 
Sbjct: 181 GHCLYRAVEDQLALLSGGRSPYTYQDLREMVAAYMRNHTSDFLPFFLSENLIEDDSDESP 240

Query: 240 VERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEY-SNGGSDSSG 298
            ++FENYCKEVESTA WGG+LEL ALTHCL+KHIMI+SGSFPDVEMGKEY S+GG+  S 
Sbjct: 241 AQKFENYCKEVESTATWGGQLELGALTHCLKKHIMIFSGSFPDVEMGKEYKSDGGAGMSN 300

Query: 299 SSIILSYHRHAFGLGEHYNSVIP 321
            SI+LSYH+HAFGLGEHYNSV+P
Sbjct: 301 LSIMLSYHKHAFGLGEHYNSVVP 323

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807892|ref|NP_001242191.1| uncharacterized protein LOC100780620 [Glycine max] gi|255641250|gb|ACU20902.1| unknown [Glycine max]

 Score =  467 bits (1201), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 236/323 (73%), Positives = 277/323 (85%), Gaps = 2/323 (0%)

Query: 1   MADTQEIEETP-SEAHSGDASQKKQETRDEMLSRHRKEISQLQNKETELKKAAAKGSKAE 59
           M DTQEIEE    E  S   S+K+QET DE+LSRHRKEI QLQ KE E+KKA A+GSKAE
Sbjct: 1   MEDTQEIEEQAHKEVISDKTSEKQQETLDEILSRHRKEILQLQKKEVEMKKATARGSKAE 60

Query: 60  QKAKKKQVEEEISRLSAKLREKHAKELASLGYSSSNGNEKSNLDNLVKAVAGVTVISQHD 119
           QKAKKKQVEEE+ +LSAKL+E HAKEL +LGY S NGNEKSNLD+LVKA+AGV+V SQ +
Sbjct: 61  QKAKKKQVEEEVCQLSAKLKENHAKELTALGYISGNGNEKSNLDSLVKAIAGVSVTSQPE 120

Query: 120 QAKPSKGTKRREKRAQQEAAREQRIQEEQSNIVSDRTVEDEKLEKKLGPLGLTVNDIKPD 179
             K SK  +RR+KRAQQEA REQRIQ EQS+I+SDR +E+EKLEKKL PLGLTV +IKPD
Sbjct: 121 HTKVSKAKQRRDKRAQQEAEREQRIQAEQSDIISDRVIENEKLEKKLKPLGLTVCEIKPD 180

Query: 180 GHCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQ 239
           GHCLYRA+EDQLA LSGG SPY +Q+LR+MVAAYMR+H+SDFLPF+LSEN+I ++S +S 
Sbjct: 181 GHCLYRAIEDQLAILSGGRSPYTYQELREMVAAYMRNHTSDFLPFFLSENLIEDDSNESF 240

Query: 240 VERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEY-SNGGSDSSG 298
            ++F NYCKEVESTA WGG+LEL ALTHCL+KHIMI+SGSFPDVEMGKEY S+GG+  S 
Sbjct: 241 AQKFGNYCKEVESTATWGGQLELGALTHCLKKHIMIFSGSFPDVEMGKEYKSDGGTGLSN 300

Query: 299 SSIILSYHRHAFGLGEHYNSVIP 321
           SSI+LSYH+HAFGLGEHYNSV+P
Sbjct: 301 SSIMLSYHKHAFGLGEHYNSVVP 323

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225436773|ref|XP_002267732.1| PREDICTED: OTU domain-containing protein 6B isoform 2 [Vitis vinifera]

 Score =  450 bits (1157), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 243/323 (75%), Positives = 276/323 (85%), Gaps = 4/323 (1%)

Query: 1   MADTQEIEETPSEAHSGDASQKKQETRDEMLSRHRKEISQLQNKETELKKAAAKGSKAEQ 60
           M DTQE +  P E    D  +KK+ET DEMLSRHRKEISQLQNKE  +KKAAAKGSKAEQ
Sbjct: 1   MEDTQEKDGKPPEEFPEDTHEKKRETLDEMLSRHRKEISQLQNKEAAMKKAAAKGSKAEQ 60

Query: 61  KAKKKQVEEEISRLSAKLREKHAKELASLGYSSSNGNEKSNLDNLVKAVAGVTVISQHDQ 120
           KAKKKQVE+EIS+LS+ L+EK A ELAS+GYSS +G EKSNLDNLVKA+AGV+V SQ + 
Sbjct: 61  KAKKKQVEDEISQLSSDLKEKQAAELASIGYSSGSGKEKSNLDNLVKAIAGVSVTSQAEH 120

Query: 121 AKPSKGTKRREKRAQQEAAREQRIQEEQSNIVSDRTVEDEKLEKKLGPLGLTVNDIKPDG 180
           ++PSK  KRREKRAQQEAAREQRIQEEQSNIVSDR +E+E LEKKL PLGL VNDIKPDG
Sbjct: 121 SRPSKSAKRREKRAQQEAAREQRIQEEQSNIVSDRMIENEILEKKLEPLGLAVNDIKPDG 180

Query: 181 HCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQV 240
           HCLYRAVEDQLA LSGG+SPY +Q+LR+MVAAYMR H+SDFLPF+LSE     +S  S  
Sbjct: 181 HCLYRAVEDQLALLSGGSSPYTYQELREMVAAYMRKHASDFLPFFLSET--EGDSDISLA 238

Query: 241 ERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEYSN--GGSDSSG 298
           ERFENYCKE+ESTAAWGG+LEL ALTHCL+KHIMI+SGSFPDVEMGKEY +  G +D+S 
Sbjct: 239 ERFENYCKEIESTAAWGGQLELGALTHCLKKHIMIFSGSFPDVEMGKEYKSDVGRTDTSN 298

Query: 299 SSIILSYHRHAFGLGEHYNSVIP 321
            SI+LSYH+HAFGLGEHYNSVIP
Sbjct: 299 QSIMLSYHKHAFGLGEHYNSVIP 321

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|89953403|gb|ABD83295.1| Fgenesh protein 81 [Beta vulgaris]

 Score =  449 bits (1155), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 240/325 (73%), Positives = 276/325 (84%), Gaps = 4/325 (1%)

Query: 1   MADTQEIEETPSEAHSGDASQKKQETRDEMLSRHRKEISQLQNKETELKKAAAKGSKAEQ 60
           M  + EIE   ++ +  DAS KKQETRDEMLSRHRKEI QLQNKE E+KKAAAKGSKAEQ
Sbjct: 1   MEHSSEIEVLVAQENFSDASVKKQETRDEMLSRHRKEIGQLQNKEIEMKKAAAKGSKAEQ 60

Query: 61  KAKKKQVEEEISRLSAKLREKHAKELASLGYSSS---NGNEKSNLDNLVKAVAGVTVISQ 117
           KAKKKQVEEEI++LSAKL+EKHA+EL+SLGY SS   +GN++ NLD LVKA+AGV+V S 
Sbjct: 61  KAKKKQVEEEIAKLSAKLKEKHAQELSSLGYISSSKVDGNDRGNLDTLVKAIAGVSVASA 120

Query: 118 -HDQAKPSKGTKRREKRAQQEAAREQRIQEEQSNIVSDRTVEDEKLEKKLGPLGLTVNDI 176
            ++  KPSK  KRREKRAQ+EAAREQRI+EEQS+IVSDRTVE+E LEKKLGPLGLT+ ++
Sbjct: 121 ANNNHKPSKSVKRREKRAQEEAAREQRIKEEQSSIVSDRTVENELLEKKLGPLGLTIYEV 180

Query: 177 KPDGHCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESA 236
           KPDGHCLYRAVEDQL HLS G+SPYNFQQLR+MVA+YMRDH+ DFLPF+ SEN +  ES 
Sbjct: 181 KPDGHCLYRAVEDQLVHLSRGSSPYNFQQLREMVASYMRDHAFDFLPFFTSENAVEGESD 240

Query: 237 QSQVERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEYSNGGSDS 296
            S  +RFE+YCKEVESTAAWGG+LEL ALTHCL+KHIMI+SGSFPDVEMGKEY      S
Sbjct: 241 DSLSQRFESYCKEVESTAAWGGQLELGALTHCLKKHIMIFSGSFPDVEMGKEYKIDDDAS 300

Query: 297 SGSSIILSYHRHAFGLGEHYNSVIP 321
             S I LSYHRHAFGLGEHYNSV+P
Sbjct: 301 LSSCIKLSYHRHAFGLGEHYNSVVP 325

Source: Beta vulgaris

Species: Beta vulgaris

Genus: Beta

Family: Amaranthaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	322
TAIR|locus:2099172	332	AT3G62940 [Arabidopsis thalian	0.978	0.948	0.512	1.6e-79
ZFIN|ZDB-GENE-040426-974	293	otud6b "OTU domain containing	0.860	0.945	0.332	1e-29
MGI|MGI:1919451	294	Otud6b "OTU domain containing	0.847	0.928	0.281	3.5e-27
DICTYBASE|DDB_G0279375	340	DDB_G0279375 "OTU domain conta	0.496	0.470	0.355	3.1e-26
MGI|MGI:3644685	290	Otud6a "OTU domain containing	0.708	0.786	0.296	6.8e-24
CGD|CAL0002605	323	orf19.1959 [Candida albicans (	0.487	0.486	0.305	2.1e-21
UNIPROTKB|G4NEZ8	304	MGG_11505 "Uncharacterized pro	0.645	0.684	0.267	4.1e-21
SGD|S000001005	307	OTU2 "Protein of unknown funct	0.406	0.426	0.324	5.6e-21
POMBASE|SPAC1952.03	324	otu2 "ubiquitin specific cyste	0.875	0.870	0.234	6.1e-14
ASPGD|ASPL0000026973	340	AN5638 [Emericella nidulans (t	0.444	0.420	0.303	2e-12

TAIR|locus:2099172 AT3G62940 [Arabidopsis thaliana (taxid:3702)]

 Score = 799 (286.3 bits), Expect = 1.6e-79, P = 1.6e-79
 Identities = 169/330 (51%), Positives = 211/330 (63%)

Query:     1 MADTQEIEETPSEAHSGDASQKKQ-ETRDEMLSRHRKEISQLQNKETXXXXXXXXXXXXX 59
             MAD +  E   SE    DASQ++Q ET +EML+RHR+EI QLQNKET             
Sbjct:     1 MADNKTSEGIVSEETPMDASQEQQHETVEEMLARHRQEIKQLQNKETEMKKAAAKGSKAE 60

Query:    60 XXXXXXXXXXXISRLSAKLREKHAKELASLGYSSSNGN---------EKSNLDNLVKAVA 110
                        IS+LS KL++K  KELAS G+SSS+ N         +K ++D LV+A+A
Sbjct:    61 QKAKKKQVEDDISKLSTKLKDKQLKELASQGFSSSSSNNIAKDETTEKKGDIDTLVRAIA 120

Query:   111 GVTVISQHDQAKPSKGTKXXXXXXXXXXXXXXXXXXXXSNIVSDRTVEDXXXXXXXXXXX 170
             GV+V +Q + +KPSK  K                    S++ SDR VE+           
Sbjct:   121 GVSVTAQQEHSKPSKSVKRREKRAKEEADREQRIKEEQSHVKSDRMVENAKLEKKLKPLG 180

Query:   171 XTVNDIKPDGHCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSSDFLPFYLSENM 230
              TV++IKPDGHCLYRAVE+QLA+ SGGASPY +Q LR+M A+YMR+H +DFLPF+LSE  
Sbjct:   181 LTVSEIKPDGHCLYRAVENQLANRSGGASPYTYQNLREMAASYMREHKTDFLPFFLSETE 240

Query:   231 IGEESAQSQVERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEYX 290
              G+ ++ S  ERFE YC+EVESTAAWG +LEL ALTHCLRKHI +YSGSFPDVEMGKEY 
Sbjct:   241 -GDSNSGSAEERFEKYCREVESTAAWGSQLELGALTHCLRKHIKVYSGSFPDVEMGKEYR 299

Query:   291 XXXXXXXXXXIILSYHRHAFGLGEHYNSVI 320
                       ++LSYHRHAFGLGEHYNSV+
Sbjct:   300 SGDDSS----LMLSYHRHAFGLGEHYNSVV 325

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008234 "cysteine-type peptidase activity" evidence=ISS

GO:0005829 "cytosol" evidence=IDA

GO:0006606 "protein import into nucleus" evidence=RCA

ZFIN|ZDB-GENE-040426-974 otud6b "OTU domain containing 6B" [Danio rerio (taxid:7955)]

 Score = 329 (120.9 bits), Expect = 1.0e-29, P = 1.0e-29
 Identities = 100/301 (33%), Positives = 134/301 (44%)

Query:    25 ETRDEMLSR-HRKEISQLQNKETXXXXXXXXXXXXXXXXXXXXXXXXISRLSAKLREKHA 83
             ET +E L++ HRKE   LQ K                          I++L A+L +KH 
Sbjct:     5 ETAEEQLAKQHRKEKKDLQAK----IQSMKNAVPKNDKKRRKQLTEDIAKLEAELSQKHE 60

Query:    84 KELASLGYSSSNGNEKSNLDNLVKAVAGVTVISQHD-QAKPSKGTKXXXXXXXXXXXXXX 142
              EL  L  +SS       LD++  +VA     S    Q++ SK  K              
Sbjct:    61 NEL-KLQNTSSVEEVSDALDSM--SVANHEEQSDPSKQSRTSKAQKRRDKKAALEKEREM 117

Query:   143 XXXXXX-SNIVSDRTVEDXXXXXXXXXXXXTVNDIKPDGHCLYRAVEDQLAHLSGGASPY 201
                     N+   R  E              + +I  DGHC+YRAVE QL    G A   
Sbjct:   118 RIAEAEVENLSGSRHQEGLKLREKLVERHLQIKEISSDGHCMYRAVEHQLTE-RGLA--L 174

Query:   202 NFQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFENYCKEVESTAAWGGELE 261
               ++LR   A YMR H+ DF+PF  + N  G+       E FE YC +V  TAAWGG+LE
Sbjct:   175 GLKELRDQTAQYMRSHADDFMPFLTNPNT-GD---MYTAEEFEKYCSDVADTAAWGGQLE 230

Query:   262 LRALTHCLRKHIMIYSGSFPDVEMGKEYXXXXXXXXXXXIILSYHRHAFGLGEHYNSVIP 321
             L+AL+  L+  I +     P + +G+EY           I L Y RHA+GLGEHYNSV P
Sbjct:   231 LKALSQVLQLPIEVIQADSPCITIGEEYDKPK-------ITLIYMRHAYGLGEHYNSVEP 283

Query:   322 I 322
             +
Sbjct:   284 L 284

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

MGI|MGI:1919451 Otud6b "OTU domain containing 6B" [Mus musculus (taxid:10090)]

 Score = 305 (112.4 bits), Expect = 3.5e-27, P = 3.5e-27
 Identities = 83/295 (28%), Positives = 132/295 (44%)

Query:    25 ETRDEMLSRHRKEISQLQNKETXXXXXXXXXXXXXXXXXXXXXXXXISRLSAKLREKHAK 84
             +  ++++ RHRKE  +LQ K                          +++L  ++ +KH +
Sbjct:    10 DDEEQLVRRHRKEKKELQAK----IQGMKNAVPKNDKKRRKQLTEDVAKLEREMEQKHRE 65

Query:    85 ELASLGYSSSNGNEKSNLDNLVKAVAGVTVISQHDQAKPSKGTKXXXXXXXXXXXXXXXX 144
             EL  L   +    + S +D++   ++ + + +Q  +   ++  +                
Sbjct:    66 ELEQLKQLTF---KDSKIDSVAVNISNLVLENQPPRISKAQ-KRREKKAALEKEREERIA 121

Query:   145 XXXXSNIVSDRTVEDXXXXXXXXXXXXTVNDIKPDGHCLYRAVEDQLAHLSGGASPYNFQ 204
                  N+   R +E              +  I  DGHC+Y A+EDQL       +     
Sbjct:   122 EAEIENLSGARHLESEKLAQILAARELEIKQIPSDGHCMYGALEDQLREQDCALT---VA 178

Query:   205 QLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFENYCKEVESTAAWGGELELRA 264
              LR+  A YM+ HS DFLPF L+    G+       E F  YC ++ +TAAWGG+LELRA
Sbjct:   179 SLRRQTAEYMQTHSDDFLPF-LTNPSTGDMYTP---EEFGKYCDDIVNTAAWGGQLELRA 234

Query:   265 LTHCLRKHIMIYSGSFPDVEMGKEYXXXXXXXXXXXIILSYHRHAFGLGEHYNSV 319
             L+H L+  I I     P + +G+EY           ++L Y RHA+GLGEHYNSV
Sbjct:   235 LSHILQTPIEILQADAPPIIVGEEYPRNP-------LVLVYMRHAYGLGEHYNSV 282

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

DICTYBASE|DDB_G0279375 DDB_G0279375 "OTU domain containin protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 252 (93.8 bits), Expect = 3.1e-26, Sum P(2) = 3.1e-26
 Identities = 63/177 (35%), Positives = 98/177 (55%)

Query:   150 NIVSDRTVEDXXXXXXXXXXXXTVNDIKPDGHCLYRAVEDQLA---HLSGGASPYNFQQL 206
             N VS   +E             TV  I PDG CLY+A+ +QL     ++   S    ++L
Sbjct:   175 NHVSKGVIEMNDFLAKLKPLNKTVKFIPPDGDCLYQAITNQLLINKDINEEESKSYAKKL 234

Query:   207 RQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFENYCKE-VESTAAWGGELELRAL 265
             R + + Y++++  +FLPF +SE    +E + ++ +  + YC+E V +   WGG +EL+AL
Sbjct:   235 RTIASDYIKNNRDEFLPFIISE----DEYSTAE-DPIQEYCQEQVLTIGKWGGHIELKAL 289

Query:   266 THCLRKHIMIYSGSFPDVEMGKEYXXXXXXXXXXXIILSYHRHAFGLGEHYNSVIPI 322
             +  L+K I I++    D+ +G+E+           I L+YHRHAF LGEHYNS IPI
Sbjct:   290 SQSLKKVITIFNAYSNDIIIGEEFTNP--------IYLTYHRHAFTLGEHYNSAIPI 338

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

MGI|MGI:3644685 Otud6a "OTU domain containing 6A" [Mus musculus (taxid:10090)]

 Score = 274 (101.5 bits), Expect = 6.8e-24, P = 6.8e-24
 Identities = 75/253 (29%), Positives = 115/253 (45%)

Query:    71 ISRLSAKLREKHAKELASLGYSSSNGNEKSNLDNLVKAVAGVTVISQHDQAKPSKGTKXX 130
             ISRL A++ ++H +EL   G      N  S++D++   +  + +  ++   +P K  K  
Sbjct:    48 ISRLEAEMEQRHKQELEKFGE-----NPDSSVDSVTADLEKMNL--ENMPPRPPKAQKRR 100

Query:   131 XXXXXXXXXXXXXX-XXXXSNIVSDRTVEDXXXXXXXXXXXXTVNDIKPDGHCLYRAVED 189
                                  + ++R  E+             +  I  DGHC+YRA++D
Sbjct:   101 DRRAHQERRHQERMPAAQAEQLAANRREEEEKVAAILGAKNLEMKTIPADGHCMYRAIQD 160

Query:   190 QLAHLSGGASPYNFQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFENYCKE 249
             QL            + LR   A YMR H  DFLPF+ +E   G    +   E F  YC +
Sbjct:   161 QLVF------SVTIESLRYRTAYYMRKHIDDFLPFF-TEPEAGNFYTR---EDFLRYCDD 210

Query:   250 VESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEYXXXXXXXXXXXIILSYHRHA 309
             +   A+WGG+LELRAL+H L+  I +   + P + +G+EY           + L Y  +A
Sbjct:   211 IVHNASWGGQLELRALSHVLQTPIEVVQANSPTIVIGEEYTRKP-------VTLVYLHYA 263

Query:   310 FGLGEHYNSVIPI 322
                GEHYNSV PI
Sbjct:   264 CDFGEHYNSVKPI 276

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

CGD|CAL0002605 orf19.1959 [Candida albicans (taxid:5476)]

 Score = 213 (80.0 bits), Expect = 2.1e-21, Sum P(2) = 2.1e-21
 Identities = 55/180 (30%), Positives = 87/180 (48%)

Query:   149 SNIVSDRTVEDXXXXXXXXXXXXTVNDIKPDGHCLYRAVEDQLA-------HL--SGGAS 199
             SN V  R +E                +IKPDGHCL+ +++DQL        HL  +G   
Sbjct:   155 SNTVDYRQIEIESMDKLLSLNNLQSFEIKPDGHCLFASIQDQLKVRHQDVEHLDHNGPED 214

Query:   200 PYNFQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFENYCKEVESTAAWGGE 259
               +  QLR++   Y++ +  DF+PF + EN  GE      +   ++Y  E+ +TA WG +
Sbjct:   215 VPSIDQLRKLAGDYIKSNQEDFIPFLIDENT-GE------LRDLDDYINELTTTAMWGSD 267

Query:   260 LELRALTHCLRKHIMIYSGSFPDVEMGKEYXXXXXXXXXXXIILSYHRHAFGLGEHYNSV 319
             +E+ AL+      I IY      + + +             + L Y++H+FGLGEHYNS+
Sbjct:   268 MEILALSKVFNCPISIYMAGASTLTINEH-------GQLPELKLGYYKHSFGLGEHYNSL 320

GO:0004843 "ubiquitin-specific protease activity" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0016579 "protein deubiquitination" evidence=IEA

UNIPROTKB|G4NEZ8 MGG_11505 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 204 (76.9 bits), Expect = 4.1e-21, Sum P(2) = 4.1e-21
 Identities = 64/239 (26%), Positives = 99/239 (41%)

Query:    90 GYSSSNGNEKSNLDNLVKAVAGVTVISQHDQAKPSKGTKXXXXXXXXXXXXXXXXXXXXS 149
             G S +  NEK +++     V G          K ++  +                    S
Sbjct:    84 GESQAPSNEKESVE-----VGGTQPPQNQAGKKRNRQKERLARRAAEQEAAAEAAAAEAS 138

Query:   150 NIVSDRTVEDXXXXXXXXXXXXTVNDIKPDGHCLYRAVEDQLAHLS------GGASPYN- 202
             N+V  R+ E                +I PDGHCL+ A  DQL+ LS       GA   + 
Sbjct:   139 NMVDHRSNEAAHMARELATHSLVEKEIAPDGHCLFSAFADQLSTLSIPLQQKSGAGDDSV 198

Query:   203 --FQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFENYCKEVESTAAWGGEL 260
               ++ +R+  ++Y+ DH+ DF PF L E +             ++Y +++  TA WGG +
Sbjct:   199 PAYRIVRRAASSYISDHADDFAPF-LEEPL-------------DDYVRKMRDTAEWGGHM 244

Query:   261 ELRALTHCLRKHIMIYSGSFPDVEMGKEYXXXXXXXXXXXIILSYHRHAFGLGEHYNSV 319
             EL AL       + + +     V   KE            + L+Y+RH FGLGEHYNS+
Sbjct:   245 ELLALASTYNVEVRVIADGRTAVVQPKE---PKEDEPARQVWLAYYRHGFGLGEHYNSL 300

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0043581 "mycelium development" evidence=IEP

SGD|S000001005 OTU2 "Protein of unknown function" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 197 (74.4 bits), Expect = 5.6e-21, Sum P(2) = 5.6e-21
 Identities = 48/148 (32%), Positives = 78/148 (52%)

Query:   175 DIKPDGHCLYRAVEDQLA--HLSGGASP-YNFQQLRQMVAAYMRDHSSDFLPFYLSENMI 231
             DI+PDGHCL+ ++ DQL   H         +  +LR +   Y+++H  DF+P+   E  +
Sbjct:   171 DIQPDGHCLFASILDQLKLRHDPKKLDQDMDVMKLRWLSCNYVQEHRDDFIPYLFDEETM 230

Query:   232 GEESAQSQVERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEYXX 291
                    +++  + Y KE+E TA WGGE+E+ AL+H     I I     P +++  E   
Sbjct:   231 -------KMKDIDEYTKEMEHTAQWGGEIEILALSHVFDCPISILMSGRP-IQVYNECGK 282

Query:   292 XXXXXXXXXIILSYHRHAFGLGEHYNSV 319
                      + L Y++H++ LGEHYNS+
Sbjct:   283 NPE------LKLVYYKHSYALGEHYNSL 304

GO:0008150 "biological_process" evidence=ND

GO:0005840 "ribosome" evidence=IDA

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=IDA

POMBASE|SPAC1952.03 otu2 "ubiquitin specific cysteine protease, OTU family, Otu2" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 186 (70.5 bits), Expect = 6.1e-14, P = 6.1e-14
 Identities = 75/320 (23%), Positives = 128/320 (40%)

Query:    21 QKKQETRDEMLSRHRKEISQLQNKETXXXXXXXXXXXXXXXXXXXXXXXXISRLSAKLRE 80
             ++K +  +E+LS+ R+E  +LQ+K T                        IS++ A L +
Sbjct:    19 KRKSKKMEELLSKQREECKELQSKITNLRKQLKEGNKKQKRALQQK----ISQMEADLSQ 74

Query:    81 KHAKELASL--GYSSSNGNEKSNLDN-LVKAVAGVTVISQH---------------DQAK 122
             KHA E   L  G   +N  ++ +L N L++ +    + +                  Q K
Sbjct:    75 KHATERQKLDKGDEETNETQQEDLLNTLLQQMEDTKITTAEKSSVQSSLNTKENTPQQPK 134

Query:   123 PSKGT-KXXXXXXXXXXXXXXXXXXXXSNIVSDRTVEDXXXXXXXXXXXXTVN-DIKPDG 180
              S+   K                    S  ++D   E+             V  DI  DG
Sbjct:   135 KSRNRQKERLERRKAEMKKMSEQAELESEKMADLKNEEKKKFSKILEEAGLVAVDIPADG 194

Query:   181 HCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQV 240
             +CL+ ++  QL +        N Q LR   A Y+  H   F  F L E     ES +  V
Sbjct:   195 NCLFASISHQLNYHHN--VKLNSQALRNKSADYVLKHCEQFEGFLLDE-----ESGE--V 245

Query:   241 ERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEYXXXXXXXXXXX 300
                 +YC E+ + + WG ++E++AL + L   + +Y+   P ++                
Sbjct:   246 LPVSDYCNEIRNNSKWGSDIEIQALANSLEVPVHVYNTEGPVLKFNPS-----TVKFEKP 300

Query:   301 IILSYHRHAFGLGEHYNSVI 320
             + ++Y++H FGLG HYNS++
Sbjct:   301 LCIAYYQHLFGLGAHYNSLL 320

GO:0004843 "ubiquitin-specific protease activity" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006508 "proteolysis" evidence=IEA

GO:0016579 "protein deubiquitination" evidence=IDA

ASPGD|ASPL0000026973 AN5638 [Emericella nidulans (taxid:162425)]

 Score = 160 (61.4 bits), Expect = 2.0e-12, Sum P(2) = 2.0e-12
 Identities = 47/155 (30%), Positives = 72/155 (46%)

Query:   175 DIKPDGHCLYRAVEDQLAHLSGGASPYNFQ-------QLRQMVAAYMRDHSSDFLPFYLS 227
             +I PDGHCL+ AV  QL  L  G  P   +       Q R    A  + H        ++
Sbjct:   184 EINPDGHCLFSAVATQLDELGLGLRPDPSRIVIGPTTQTRIDTVASPK-HDGYRAVRAVT 242

Query:   228 ENMIGEESAQSQV---ERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVE 284
              + I E   + +    E  E+Y ++++ TA WGG+LEL+A+       I +  G    +E
Sbjct:   243 ADFIAEHKDEFEPFMEEPLESYTRKIKLTAEWGGQLELQAIARAYGVDINVVQGD-GRIE 301

Query:   285 MGKEYXXXXXXXXXXXIILSYHRHAFGLGEHYNSV 319
               +             I L+Y+RH +GLGEHYN++
Sbjct:   302 KIEAGDVEEEERAKRVIWLAYYRHTYGLGEHYNAL 336

GO:0005840 "ribosome" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0004843 "ubiquitin-specific protease activity" evidence=IEA

GO:0016579 "protein deubiquitination" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5ZIP6	OTU6B_CHICK	No assigned EC number	0.3762	0.8385	0.8940	yes	no
Q5M8L0	OTU6B_XENTR	No assigned EC number	0.375	0.8260	0.9047	yes	no
Q8K2H2	OTU6B_MOUSE	No assigned EC number	0.3651	0.8354	0.9149	yes	no
Q8N6M0	OTU6B_HUMAN	No assigned EC number	0.3680	0.8167	0.8976	yes	no
Q7ZV00	OTU6B_DANRE	No assigned EC number	0.3921	0.8447	0.9283	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_fgenesh4_pg.C_LG_XIV0731	hypothetical protein (327 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	estExt_Genewise1_v1.C_LG_VII2715	hypothetical protein (380 aa)				•					0.448

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	322
pfam02338	123	pfam02338, OTU, OTU-like cysteine protease	2e-26
COG5539	306	COG5539, COG5539, Predicted cysteine protease (OTU	7e-13
pfam10275	237	pfam10275, Peptidase_C65, Peptidase C65 Otubain	5e-04

>gnl|CDD|216981 pfam02338, OTU, OTU-like cysteine protease

 Score =  101 bits (252), Expect = 2e-26
 Identities = 41/141 (29%), Positives = 56/141 (39%), Gaps = 19/141 (13%)

Query: 177 KPDGHCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESA 236
             DG+CL+ AV DQL             +LR+ V  Y+R++  DF  F            
Sbjct: 1   PGDGNCLFHAVSDQL---GDAGRQELHDELREAVVEYLRENREDFEKFLE---------- 47

Query: 237 QSQVERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMG-KEYSNGGSD 295
               E    Y K +    AWGG +E+ AL H LR  I++Y      + +  K Y      
Sbjct: 48  ----EDENEYYKWISKDGAWGGNIEIFALAHILRVPIIVYKLQGGRITVYIKIYGTYLPL 103

Query: 296 SSGSSIILSYHRHAFGLGEHY 316
           +    I LSY       G HY
Sbjct: 104 NKKPVIRLSYLGLE-YTGNHY 123

This family is comprised of a group of predicted cysteine proteases, homologous to the Ovarian Tumour (OTU) gene in Drosophila. Members include proteins from eukaryotes, viruses and pathogenic bacterium. The conserved cysteine and histidine, and possibly the aspartate, represent the catalytic residues in this putative group of proteases. Length = 123

>gnl|CDD|227826 COG5539, COG5539, Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]

 Score = 67.6 bits (165), Expect = 7e-13
 Identities = 56/319 (17%), Positives = 110/319 (34%), Gaps = 41/319 (12%)

Query: 20  SQKKQET-RDEMLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKL 78
           +Q   ET  + +  + R E+  LQ K T + K    G         +++  +   LS  L
Sbjct: 6   TQAAAETAMESLTEKQRFELKDLQTKITRIMKQLTFGRP------PQRLNGKCLDLSYAL 59

Query: 79  REKHAKEL--ASLGYSSSNGNEKSNLDNLVKAVAGVTVISQHD----------QAKPSKG 126
            +K   E+  A    + +N  ++ +    ++ +  + + S             +  P + 
Sbjct: 60  SQKDEVEIEKAPKLRAETNEADQEDSLTPLQNIPELGISSFEKSVSQQSINVLEDMPGQD 119

Query: 127 TKRREKRAQQEAAREQRI---QEEQSNIVSDRTVE--DEKLEK--KLGPLGLTVNDIKPD 179
              R  +A++ + R+  +   +E  S  V           LE         +   D + D
Sbjct: 120 DNSRLFQAERYSLRDASVAKLREVVSLEVLSNPDLYNPAILEIDVIAYATWIVKPDSQGD 179

Query: 180 GHCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQ 239
           G      + DQL             + R     Y++  S  F   +        +     
Sbjct: 180 GCIEIAIISDQLPVRIHVVDVDKDSEDRYNSHPYVQRISILFTGIHF-------DEETLA 232

Query: 240 VERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEYSNGGSDSSGS 299
           +  ++ Y  EV   A+ G  +E++ L   L+      + + P +    + +  G+   G 
Sbjct: 233 MVLWDTYVNEVLFDASDGITIEIQQLASLLKNPHYYTNTASPSI----KCNICGTGFVGE 288

Query: 300 SIILSYHRHAFGLGEHYNS 318
                Y+ HA   G HYN 
Sbjct: 289 ---KDYYAHALATG-HYNF 303

Length = 306

>gnl|CDD|220671 pfam10275, Peptidase_C65, Peptidase C65 Otubain

 Score = 40.7 bits (96), Expect = 5e-04
 Identities = 26/115 (22%), Positives = 48/115 (41%), Gaps = 24/115 (20%)

Query: 206 LRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFENYCK-EVESTAAWGGELELRA 264
            R + +AY+++++ ++ PF + E +  EE           +C+ EVE  A     +++ A
Sbjct: 140 FRLLTSAYIKENADEYQPF-IDELLTVEE-----------FCEQEVEPMAKESDHVQIIA 187

Query: 265 LTHCLRKHIMIYSGSFPDVEMGKEY--SNGGSDSSGSSIILSYHRHAFGLGEHYN 317
           L   L   + +    + D   G EY   N   + +   I L Y         HY+
Sbjct: 188 LAEALGIPVRVE---YLDRSEGNEYNHHNFPPEPNAPKITLLYRPG------HYD 233

This family of proteins conserved from plants to humans is a highly specific ubiquitin iso-peptidase that removes ubiquitin from proteins. The modification of cellular proteins by ubiquitin (Ub) is an important event that underlies protein stability and function in eukaryote being a dynamic and reversible process. Otubain carries several key conserved domains: (i) the OTU (ovarian tumour domain) in which there is an active cysteine protease triad (ii) a nuclear localisation signal, (iii) a Ub interaction motif (UIM)-like motif phi-xx-A-xxxs-xx-Ac (where phi indicates an aromatic amino acid, x indicates any amino acid and Ac indicates an acidic amino acid), (iv) a Ub-associated (UBA)-like domain and (v) the LxxLL motif. Length = 237

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	322
KOG2606	302	consensus OTU (ovarian tumor)-like cysteine protea	100.0
COG5539	306	Predicted cysteine protease (OTU family) [Posttran	99.97
PF02338	121	OTU: OTU-like cysteine protease; InterPro: IPR0033	99.93
KOG3288	307	consensus OTU-like cysteine protease [Signal trans	99.7
PF10275	244	Peptidase_C65: Peptidase C65 Otubain; InterPro: IP	99.63
KOG3991	256	consensus Uncharacterized conserved protein [Funct	99.59
KOG2605	371	consensus OTU (ovarian tumor)-like cysteine protea	99.38
COG5539	306	Predicted cysteine protease (OTU family) [Posttran	98.86
PF05415	104	Peptidase_C36: Beet necrotic yellow vein furovirus	90.93
PF14282	106	FlxA: FlxA-like protein	84.02

>KOG2606 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1e-72  Score=522.49  Aligned_cols=285  Identities=44%  Similarity=0.748  Sum_probs=247.6

Q ss_pred             cccccHHHHHHhHHHHHHHHHHHHHHHHhhhccCChhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC--CC
Q 020732           22 KKQETRDEMLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAKELASLGYSSSNGN--EK   99 (322)
Q Consensus        22 ~~~~~~e~l~~rHrkE~k~Lq~~i~~~kk~~~k~~k~~~Kk~kK~v~~e~~~le~el~~rh~~El~~l~~~~~~~~--~~   99 (322)
                      ...+++++|++|||+|+|+||++||+|||+++||+|    ++||+++.+|++||.+|.+||.+||..+........  .+
T Consensus         9 ~~~~~~e~iLaRHr~E~keLq~ki~~mKk~a~k~~k----~~rK~~~~~~~~le~el~qkH~kEL~~~~~~~~~e~~~~e   84 (302)
T KOG2606|consen    9 QDEESNEEILARHRRERKELQAKITSMKKAAPKGNK----KKRKELTEDIAKLEKELSQKHKKELEKLKLINESEVTPKE   84 (302)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccH----HHHHHHHHHHHHHHhHHHHHHHHHHHhhcccCccccCccc
Confidence            344556999999999999999999999999999996    889999999999999999999999999985332111  12


Q ss_pred             CcchhhhhhhcccccccccCCCCCccchhhHHHHHHHHHHHH-HHHHHHH--hcccCCchhHHHHHHHHhccCCCeeeee
Q 020732          100 SNLDNLVKAVAGVTVISQHDQAKPSKGTKRREKRAQQEAARE-QRIQEEQ--SNIVSDRTVEDEKLEKKLGPLGLTVNDI  176 (322)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~sKa~~Rr~~r~~~~~~r~-~~i~~e~--~~~~~~r~~E~~~l~~~L~~~gL~i~~I  176 (322)
                      ...++++..++.+.....++.|+.||++|||.+++..++.++ ++|.+++  .+.++.+.+|.+.|.+.|...||.+++|
T Consensus        85 ~~~~s~l~~~a~~~~~~~ee~P~~sKa~k~r~k~r~e~r~~e~~~~~e~~~~~~~~~~k~~E~~k~~~il~~~~l~~~~I  164 (302)
T KOG2606|consen   85 NLIESVLSPIANMSLENKEETPRQSKARKRREKKRKEERKREAEKIAEEESLSNQADAKSMEKEKLAQILEERGLKMFDI  164 (302)
T ss_pred             cchhhhhcccccccccccccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHhccCccccC
Confidence            234566666667766666555667898888877766666665 8887644  4789999999999999999999999999


Q ss_pred             CCCCchhhHHHHHHHhhccCCCCcchHHHHHHHHHHHHhcCccccccccccccccchhhhhhhhhhHHHHHHHhccCCcc
Q 020732          177 KPDGHCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFENYCKEVESTAAW  256 (322)
Q Consensus       177 ~~DGnCLFrAIa~QL~~~~~~~~~~~~~~LR~~~a~yi~~n~d~F~pfl~~~~~~~~~~~~~~~~~~~~Y~~~m~~~~~W  256 (322)
                      |+||||||+||+|||..+++  ...++..||..+|+||+.|.++|.||+.++.+++..+    .++|+.||+.|++|+.|
T Consensus       165 p~DG~ClY~aI~hQL~~~~~--~~~~v~kLR~~~a~Ymr~H~~df~pf~~~eet~d~~~----~~~f~~Yc~eI~~t~~W  238 (302)
T KOG2606|consen  165 PADGHCLYAAISHQLKLRSG--KLLSVQKLREETADYMREHVEDFLPFLLDEETGDSLG----PEDFDKYCREIRNTAAW  238 (302)
T ss_pred             CCCchhhHHHHHHHHHhccC--CCCcHHHHHHHHHHHHHHHHHHhhhHhcCccccccCC----HHHHHHHHHHhhhhccc
Confidence            99999999999999998775  5589999999999999999999999999998877432    67899999999999999


Q ss_pred             CchHHHHHHHHhhcCcEEEEECCCCceEeCCCCCCCCCCCCCCeEEEEeccCCCCCCCcccccccC
Q 020732          257 GGELELRALTHCLRKHIMIYSGSFPDVEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVIPI  322 (322)
Q Consensus       257 GG~lEL~ALA~~l~~~I~V~~~~~~~~~~g~e~~~~~~~~~~~~I~L~Y~~~~y~LGeHYnSv~p~  322 (322)
                      ||+|||.|||++|++||+||+.++|+++||++|..      .+||.|+||+|+|+||+|||||.|.
T Consensus       239 GgelEL~AlShvL~~PI~Vy~~~~p~~~~geey~k------d~pL~lvY~rH~y~LGeHYNS~~~~  298 (302)
T KOG2606|consen  239 GGELELKALSHVLQVPIEVYQADGPILEYGEEYGK------DKPLILVYHRHAYGLGEHYNSVTPL  298 (302)
T ss_pred             cchHHHHHHHHhhccCeEEeecCCCceeechhhCC------CCCeeeehHHhHHHHHhhhcccccc
Confidence            99999999999999999999999999999999863      5899999999999999999999884

>COG5539 Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=6.6e-33  Score=256.57  Aligned_cols=279  Identities=19%  Similarity=0.159  Sum_probs=219.1

Q ss_pred             cccccc-HHHHHHhHHHHHHHHHHHHHHHHhhhccCChhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCC
Q 020732           21 QKKQET-RDEMLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAKELASLGYSSSNGNEK   99 (322)
Q Consensus        21 ~~~~~~-~e~l~~rHrkE~k~Lq~~i~~~kk~~~k~~k~~~Kk~kK~v~~e~~~le~el~~rh~~El~~l~~~~~~~~~~   99 (322)
                      +..-+| |+.|+.+||.|.++||.+||.++|+++.|.+    +.|  |+..|..|+..|..+|+-|+..+.....+.++-
T Consensus         7 ~~~~~t~~e~lt~kq~~e~~dlq~kI~~~~kql~~g~~----~qr--l~~k~~~ls~~ls~~~e~~i~k~~~~~~et~ea   80 (306)
T COG5539           7 QAAAETAMESLTEKQRFELKDLQTKITRIMKQLTFGRP----PQR--LNGKCLDLSYALSQKDEVEIEKAPKLRAETNEA   80 (306)
T ss_pred             ccccchHHHHHHhhhhcccHHHHHHHHHHHHHHHccCc----hhh--hccccchHHHHhhhhHHHHhhhhhhhcchhhcc
Confidence            344555 8999999999999999999999999998875    322  999999999999999999999886432211111


Q ss_pred             Ccchhhh--hhhcccc------------ccccc-CCCCCccchhhHHHHHHHHHHHHHHHHHHHhcc----cCCchhHHH
Q 020732          100 SNLDNLV--KAVAGVT------------VISQH-DQAKPSKGTKRREKRAQQEAAREQRIQEEQSNI----VSDRTVEDE  160 (322)
Q Consensus       100 ~~~~~~~--~~~~~~~------------~~~~~-~~~~~sKa~~Rr~~r~~~~~~r~~~i~~e~~~~----~~~r~~E~~  160 (322)
                      +++++++  ..++...            ..... .+....++++||+.+..++.+....+++.++.+    ++-...+..
T Consensus        81 ~q~~~l~~~q~~~~~~iss~e~s~~qq~~nv~ed~p~~~d~srl~q~~~~~l~~asv~~lrE~vs~Ev~snPDl~n~~i~  160 (306)
T COG5539          81 DQEDSLTPLQNIPELGISSFEKSVSQQSINVLEDMPGQDDNSRLFQAERYSLRDASVAKLREVVSLEVLSNPDLYNPAIL  160 (306)
T ss_pred             CCCccCCCcccCCccccccCcccccccccchhccCCCCCchHHHHHHHHhhhhhhhHHHHHHHHHHHHhhCccccchhhc
Confidence            1111111  1111111            11111 123456899999999999998888887755443    455788888


Q ss_pred             HHHHHhccCCCeeeeeCCCCchhhHHHHHHHhhccCCCCcchHHHHHHHHHHHHhcCccccccccccccccchhhhhhhh
Q 020732          161 KLEKKLGPLGLTVNDIKPDGHCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQV  240 (322)
Q Consensus       161 ~l~~~L~~~gL~i~~I~~DGnCLFrAIa~QL~~~~~~~~~~~~~~LR~~~a~yi~~n~d~F~pfl~~~~~~~~~~~~~~~  240 (322)
                      .+...+...+|.-.++.|||+|+|.+|++||..+.....-.....+|-.-+.|...|...|.+|+.++.++.       .
T Consensus       161 ~~~~i~y~~~i~k~d~~~dG~ieia~iS~~l~v~i~~Vdv~~~~~dr~~~~~~~q~~~i~f~g~hfD~~t~~-------m  233 (306)
T COG5539         161 EIDVIAYATWIVKPDSQGDGCIEIAIISDQLPVRIHVVDVDKDSEDRYNSHPYVQRISILFTGIHFDEETLA-------M  233 (306)
T ss_pred             CcchHHHHHhhhccccCCCceEEEeEeccccceeeeeeecchhHHhhccCChhhhhhhhhhcccccchhhhh-------c
Confidence            999999999999999999999999999999987543112233588999999999999999999999988765       4


Q ss_pred             hhHHHHHHHhccCCccCchHHHHHHHHhhcCcEEEEECCCCceEeCCCCCCCCCCCCCCeEEEEeccCCCCCCCcccccc
Q 020732          241 ERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVI  320 (322)
Q Consensus       241 ~~~~~Y~~~m~~~~~WGG~lEL~ALA~~l~~~I~V~~~~~~~~~~g~e~~~~~~~~~~~~I~L~Y~~~~y~LGeHYnSv~  320 (322)
                      ..|++||+.|..++.||+.+|++|||+.|++|++++...+|.+++.+-       +.+..+-+.|++|+|++| |||++.
T Consensus       234 ~~~dt~~ne~~~~a~~g~~~ei~qLas~lk~~~~~~nT~~~~ik~n~c-------~~~~~~e~~~~~Ha~a~G-H~n~~~  305 (306)
T COG5539         234 VLWDTYVNEVLFDASDGITIEIQQLASLLKNPHYYTNTASPSIKCNIC-------GTGFVGEKDYYAHALATG-HYNFGE  305 (306)
T ss_pred             chHHHHHhhhcccccccchHHHHHHHHHhcCceEEeecCCceEEeecc-------ccccchhhHHHHHHHhhc-CccccC
Confidence            689999999999999999999999999999999999999999987541       124457789999999999 999974

>PF02338 OTU: OTU-like cysteine protease; InterPro: IPR003323 This is a group of proteins found primarily in viruses, eukaryotes and in the pathogenic bacterium Chlamydia pneumoniae

Probab=99.93  E-value=8.1e-27  Score=192.69  Aligned_cols=119  Identities=37%  Similarity=0.608  Sum_probs=95.3

Q ss_pred             CCCCchhhHHHHHHHhhccCCCCcchHHHHHHHHHHHHh-cCccccccccccccccchhhhhhhhhhHHHHHHHhccCCc
Q 020732          177 KPDGHCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMR-DHSSDFLPFYLSENMIGEESAQSQVERFENYCKEVESTAA  255 (322)
Q Consensus       177 ~~DGnCLFrAIa~QL~~~~~~~~~~~~~~LR~~~a~yi~-~n~d~F~pfl~~~~~~~~~~~~~~~~~~~~Y~~~m~~~~~  255 (322)
                      |||||||||||++||+..+. ..+.+|..||+.+++||+ .|++.|.+|+.+              .      .|.++++
T Consensus         1 pgDGnClF~Avs~~l~~~~~-~~~~~~~~lR~~~~~~l~~~~~~~~~~~~~~--------------~------~~~~~~~   59 (121)
T PF02338_consen    1 PGDGNCLFRAVSDQLYGDGG-GSEDNHQELRKAVVDYLRDKNRDKFEEFLEG--------------D------KMSKPGT   59 (121)
T ss_dssp             -SSTTHHHHHHHHHHCTT-S-SSTTTHHHHHHHHHHHHHTHTTTHHHHHHHH--------------H------HHTSTTS
T ss_pred             CCCccHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHhccchhhhhhhh--------------h------hhccccc
Confidence            79999999999999994321 057899999999999999 999999999863              1      8999999


Q ss_pred             cCchHHHHHHHHhhcCcEEEEECCCCceEeCCCCCC-CCCCCCCCeEEEEeccCCCCCCCcc
Q 020732          256 WGGELELRALTHCLRKHIMIYSGSFPDVEMGKEYSN-GGSDSSGSSIILSYHRHAFGLGEHY  316 (322)
Q Consensus       256 WGG~lEL~ALA~~l~~~I~V~~~~~~~~~~g~e~~~-~~~~~~~~~I~L~Y~~~~y~LGeHY  316 (322)
                      |||++||.|||++|+++|+||+...+.......+.. ..+....++|+|+|+.+.|..|+||
T Consensus        60 Wg~~~el~a~a~~~~~~I~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~l~~~~~Hy  121 (121)
T PF02338_consen   60 WGGEIELQALANVLNRPIIVYSSSDGDNVVFIKFTGKYPPLESPPPICLCYHGHLYYTGNHY  121 (121)
T ss_dssp             HEEHHHHHHHHHHHTSEEEEECETTTBEEEEEEESCEESTTTTTTSEEEEEETEEEEETTEE
T ss_pred             cCcHHHHHHHHHHhCCeEEEEEcCCCCccceeeecCccccCCCCCeEEEEEcCCccCCCCCC
Confidence            999999999999999999999876554321111110 1123457899999999999999999

In viruses they are annotated as replicase or RNA-dependent RNA polymerase. The eukaryotic sequences are related to the Ovarian Tumour (OTU) gene in Drosophila, cezanne deubiquitinating peptidase and tumor necrosis factor, alpha-induced protein 3 (MEROPS peptidase family C64) and otubain 1 and otubain 2 (MEROPS peptidase family C65). None of these proteins has a known biochemical function but low sequence similarity with the polyprotein regions of arteriviruses, and conserved cysteine and histidine, and possibly the aspartate, residues suggests that those not yet recognised as peptidases could possess cysteine protease activity [].; PDB: 2VFJ_C 3DKB_F 3PHW_A 3PHU_B 3PHX_A 3BY4_A 3C0R_C 3PRM_C 3PRP_C 3ZRH_A ....

>KOG3288 consensus OTU-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]

Probab=99.70  E-value=1e-17  Score=153.20  Aligned_cols=121  Identities=20%  Similarity=0.412  Sum_probs=99.6

Q ss_pred             CeeeeeCCCCchhhHHHHHHHhhccCCCCcchHHHHHHHHHHHHhcCccccccccccccccchhhhhhhhhhHHHHHHHh
Q 020732          171 LTVNDIKPDGHCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFENYCKEV  250 (322)
Q Consensus       171 L~i~~I~~DGnCLFrAIa~QL~~~~~~~~~~~~~~LR~~~a~yi~~n~d~F~pfl~~~~~~~~~~~~~~~~~~~~Y~~~m  250 (322)
                      |.++-||.|.+|||+||++-+.+...    ....+||+.+|..+..|++.|..-+.+             .+-.+||.||
T Consensus       110 l~~~vvp~DNSCLF~ai~yv~~k~~~----~~~~elR~iiA~~Vasnp~~yn~AiLg-------------K~n~eYc~WI  172 (307)
T KOG3288|consen  110 LSRRVVPDDNSCLFTAIAYVIFKQVS----NRPYELREIIAQEVASNPDKYNDAILG-------------KPNKEYCAWI  172 (307)
T ss_pred             eEEEeccCCcchhhhhhhhhhcCccC----CCcHHHHHHHHHHHhcChhhhhHHHhC-------------CCcHHHHHHH
Confidence            66788999999999999999987432    234789999999999999998655443             4568999999


Q ss_pred             ccCCccCchHHHHHHHHhhcCcEEEEECCCCce-EeCCCCCCCCCCCCCCeEEEEeccCCCCCCCcccccc
Q 020732          251 ESTAAWGGELELRALTHCLRKHIMIYSGSFPDV-EMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVI  320 (322)
Q Consensus       251 ~~~~~WGG~lEL~ALA~~l~~~I~V~~~~~~~~-~~g~e~~~~~~~~~~~~I~L~Y~~~~y~LGeHYnSv~  320 (322)
                      .+..+|||-|||..||+.|+|.|.|++.....+ .||+.      .+-...+.|.|.      |.|||++.
T Consensus       173 ~k~dsWGGaIElsILS~~ygveI~vvDiqt~rid~fged------~~~~~rv~llyd------GIHYD~l~  231 (307)
T KOG3288|consen  173 LKMDSWGGAIELSILSDYYGVEICVVDIQTVRIDRFGED------KNFDNRVLLLYD------GIHYDPLA  231 (307)
T ss_pred             ccccccCceEEeeeehhhhceeEEEEecceeeehhcCCC------CCCCceEEEEec------ccccChhh
Confidence            999999999999999999999999999776544 36643      123567899998      79999874

>PF10275 Peptidase_C65: Peptidase C65 Otubain; InterPro: IPR019400 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=99.63  E-value=4.4e-16  Score=144.46  Aligned_cols=102  Identities=24%  Similarity=0.390  Sum_probs=72.5

Q ss_pred             HHHHHHHHHHHHhcCccccccccccccccchhhhhhhhhhHHHHHHH-hccCCccCchHHHHHHHHhhcCcEEEEECCCC
Q 020732          203 FQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFENYCKE-VESTAAWGGELELRALTHCLRKHIMIYSGSFP  281 (322)
Q Consensus       203 ~~~LR~~~a~yi~~n~d~F~pfl~~~~~~~~~~~~~~~~~~~~Y~~~-m~~~~~WGG~lEL~ALA~~l~~~I~V~~~~~~  281 (322)
                      ...||..++.||+.|++.|.||+.+.+          ..+|++||.. |...+.=++++.|.|||++|+++|.|+..++.
T Consensus       139 V~flRLlts~~l~~~~d~y~~fi~~~~----------~~tve~~C~~~Vep~~~Ead~v~i~ALa~aL~v~i~v~yld~~  208 (244)
T PF10275_consen  139 VIFLRLLTSAYLKSNSDEYEPFIDGLE----------YLTVEEFCSQEVEPMGKEADHVQIIALAQALGVPIRVEYLDRS  208 (244)
T ss_dssp             HHHHHHHHHHHHHHTHHHHGGGSSTT------------S-HHHHHHHHTSSTT--B-HHHHHHHHHHHT--EEEEESSSS
T ss_pred             HHHHHHHHHHHHHhhHHHHhhhhcccc----------cCCHHHHHHhhcccccccchhHHHHHHHHHhCCeEEEEEecCC
Confidence            568999999999999999999998642          2479999975 88888899999999999999999999998854


Q ss_pred             c--eEeC-CCCCCCCCCCCCCeEEEEeccCCCCCCCccccccc
Q 020732          282 D--VEMG-KEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVIP  321 (322)
Q Consensus       282 ~--~~~g-~e~~~~~~~~~~~~I~L~Y~~~~y~LGeHYnSv~p  321 (322)
                      .  ..+. ..|.. ......+.|+|.|..      .|||-++|
T Consensus       209 ~~~~~~~~~~~~~-~~~~~~~~i~LLyrp------gHYdIly~  244 (244)
T PF10275_consen  209 VEGDEVNRHEFPP-DNESQEPQITLLYRP------GHYDILYP  244 (244)
T ss_dssp             GCSTTSEEEEES--SSTTSS-SEEEEEET------BEEEEEEE
T ss_pred             CCCCccccccCCC-ccCCCCCEEEEEEcC------CccccccC
Confidence            1  0010 01211 012347889999986      69999987

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This family of proteins is a highly specific ubiquitin iso-peptidase that removes ubiquitin from proteins. The modification of cellular proteins by ubiquitin (Ub) is an important event that underlies protein stability and function in eukaryotes, as it is a dynamic and reversible process. Otubain carries several key conserved domains: (i) the OTU (ovarian tumour domain) in which there is an active cysteine protease triad (ii) a nuclear localisation signal, (iii) a Ub interaction motif (UIM)-like motif phi-xx-A-xxxs-xx-Ac (where phi indicates an aromatic amino acid, x indicates any amino acid and Ac indicates an acidic amino acid), (iv) a Ub-associated (UBA)-like domain and (v) the LxxLL motif. ; PDB: 4DDG_C 3VON_O 2ZFY_A 4DHZ_A 4DDI_C 1TFF_A 4DHJ_I 4DHI_B.

>KOG3991 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.59  E-value=2.9e-15  Score=135.43  Aligned_cols=98  Identities=17%  Similarity=0.332  Sum_probs=77.8

Q ss_pred             HHHHHHHHHHHHhcCccccccccccccccchhhhhhhhhhHHHHHHH-hccCCccCchHHHHHHHHhhcCcEEEEECCCC
Q 020732          203 FQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFENYCKE-VESTAAWGGELELRALTHCLRKHIMIYSGSFP  281 (322)
Q Consensus       203 ~~~LR~~~a~yi~~n~d~F~pfl~~~~~~~~~~~~~~~~~~~~Y~~~-m~~~~~WGG~lEL~ALA~~l~~~I~V~~~~~~  281 (322)
                      +..||..++.+|+.|+|.|.|||..+            .++.+||.. ++--..-.|+|+|.|||+++++.|.|...+..
T Consensus       156 V~ylRLvtS~~ik~~adfy~pFI~e~------------~tV~~fC~~eVEPm~kesdhi~I~ALs~Al~i~irVey~dr~  223 (256)
T KOG3991|consen  156 VMYLRLVTSGFIKSNADFYQPFIDEG------------MTVKAFCTQEVEPMYKESDHIHITALSQALGIRIRVEYVDRG  223 (256)
T ss_pred             HHHHHHHHHHHHhhChhhhhccCCCC------------CcHHHHHHhhcchhhhccCceeHHHHHhhhCceEEEEEecCC
Confidence            57899999999999999999999762            479999997 55445558999999999999999999987643


Q ss_pred             ce-EeCC-CCCCCCCCCCCCeEEEEeccCCCCCCCcccccccC
Q 020732          282 DV-EMGK-EYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVIPI  322 (322)
Q Consensus       282 ~~-~~g~-e~~~~~~~~~~~~I~L~Y~~~~y~LGeHYnSv~p~  322 (322)
                      .- ..+. .|    +....|.|+|.|..      .|||-++|.
T Consensus       224 ~~~~~~hH~f----pe~s~P~I~LLYrp------GHYdilY~~  256 (256)
T KOG3991|consen  224 SGDTVNHHDF----PEASAPEIYLLYRP------GHYDILYKK  256 (256)
T ss_pred             CCCCCCCCcC----ccccCceEEEEecC------CccccccCC
Confidence            22 2222 23    23457899999975      799999873

>KOG2605 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]

Probab=99.38  E-value=3.5e-13  Score=131.57  Aligned_cols=134  Identities=19%  Similarity=0.249  Sum_probs=102.9

Q ss_pred             HHHHHHHhccCCCeeeeeCCCCchhhHHHHHHHhhccCCCCcchHHHHHHHHHHHHhcCccccccccccccccchhhhhh
Q 020732          159 DEKLEKKLGPLGLTVNDIKPDGHCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQS  238 (322)
Q Consensus       159 ~~~l~~~L~~~gL~i~~I~~DGnCLFrAIa~QL~~~~~~~~~~~~~~LR~~~a~yi~~n~d~F~pfl~~~~~~~~~~~~~  238 (322)
                      ...+...+...||.+..|..||+|+|||+++||++     +...|..+|+.+++++..+++.|..|++            
T Consensus       206 ~~~~~~~~~~~g~e~~Kv~edGsC~fra~aDQvy~-----d~e~~~~~~~~~~dq~~~e~~~~~~~vt------------  268 (371)
T KOG2605|consen  206 HERSAKRKKHFGFEYKKVVEDGSCLFRALADQVYG-----DDEQHDHNRRECVDQLKKERDFYEDYVT------------  268 (371)
T ss_pred             HHHHHHHHHHhhhhhhhcccCCchhhhccHHHhhc-----CHHHHHHHHHHHHHHHhhcccccccccc------------
Confidence            34444555788999999999999999999999999     4678999999999999999999998875            


Q ss_pred             hhhhHHHHHHHhccCCccCchHHHHHHHH---hhcCcEEEEECCCCceE-eCCCCCCCCCCCCCCeEEEEeccCCCCCCC
Q 020732          239 QVERFENYCKEVESTAAWGGELELRALTH---CLRKHIMIYSGSFPDVE-MGKEYSNGGSDSSGSSIILSYHRHAFGLGE  314 (322)
Q Consensus       239 ~~~~~~~Y~~~m~~~~~WGG~lEL~ALA~---~l~~~I~V~~~~~~~~~-~g~e~~~~~~~~~~~~I~L~Y~~~~y~LGe  314 (322)
                        ++|..|++.++..+.||.++|++|+|.   ....|+.|.+...+.|+ +.+.+.     .....+++.|     ..-.
T Consensus       269 --~~~~~y~k~kr~~~~~gnhie~Qa~a~~~~~~~~~~~~~~~~~t~~~~~~~~~~-----~~~~~~~~n~-----~~~~  336 (371)
T KOG2605|consen  269 --EDFTSYIKRKRADGEPGNHIEQQAAADIYEEIEKPLNITSFKDTCYIQTPPAIE-----ESVKMEKYNF-----WVEV  336 (371)
T ss_pred             --cchhhcccccccCCCCcchHHHhhhhhhhhhccccceeecccccceeccCcccc-----cchhhhhhcc-----cchh
Confidence              369999999999999999999999995   55566666666666554 222111     1122233333     3468


Q ss_pred             ccccccc
Q 020732          315 HYNSVIP  321 (322)
Q Consensus       315 HYnSv~p  321 (322)
                      ||+.+++
T Consensus       337 h~~~~~~  343 (371)
T KOG2605|consen  337 HYNTARH  343 (371)
T ss_pred             hhhhccc
Confidence            9998875

>COG5539 Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]

Probab=98.86  E-value=7.6e-10  Score=103.65  Aligned_cols=111  Identities=16%  Similarity=0.227  Sum_probs=90.7

Q ss_pred             CCCCchhhHHHHHHHhhccCCCCcchHHHHHHHHHHHHhcCccccccccccccccchhhhhhhhhhHHHHHHHhccCCcc
Q 020732          177 KPDGHCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFENYCKEVESTAAW  256 (322)
Q Consensus       177 ~~DGnCLFrAIa~QL~~~~~~~~~~~~~~LR~~~a~yi~~n~d~F~pfl~~~~~~~~~~~~~~~~~~~~Y~~~m~~~~~W  256 (322)
                      .+|..|+|++++..++.       ..+..||..++..+..|||.|.+.+.+             .+.-.||.++.+...|
T Consensus       118 ~~d~srl~q~~~~~l~~-------asv~~lrE~vs~Ev~snPDl~n~~i~~-------------~~~i~y~~~i~k~d~~  177 (306)
T COG5539         118 QDDNSRLFQAERYSLRD-------ASVAKLREVVSLEVLSNPDLYNPAILE-------------IDVIAYATWIVKPDSQ  177 (306)
T ss_pred             CCchHHHHHHHHhhhhh-------hhHHHHHHHHHHHHhhCccccchhhcC-------------cchHHHHHhhhccccC
Confidence            35889999999999975       268999999999999999999998875             3567999999999999


Q ss_pred             C-chHHHHHHHHhhcCcEEEEECCCC-ceEeCCCCCCCCCCCCCCeEEEEeccCCCCCCCcccccc
Q 020732          257 G-GELELRALTHCLRKHIMIYSGSFP-DVEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVI  320 (322)
Q Consensus       257 G-G~lEL~ALA~~l~~~I~V~~~~~~-~~~~g~e~~~~~~~~~~~~I~L~Y~~~~y~LGeHYnSv~  320 (322)
                      | |.+||.+||+.|++.|+|+..+.. ...+++.       .....+.+.|.      |.||++..
T Consensus       178 ~dG~ieia~iS~~l~v~i~~Vdv~~~~~dr~~~~-------~~~q~~~i~f~------g~hfD~~t  230 (306)
T COG5539         178 GDGCIEIAIISDQLPVRIHVVDVDKDSEDRYNSH-------PYVQRISILFT------GIHFDEET  230 (306)
T ss_pred             CCceEEEeEeccccceeeeeeecchhHHhhccCC-------hhhhhhhhhhc------ccccchhh
Confidence            9 999999999999999999998843 2234321       11235677777      68999753

>PF05415 Peptidase_C36: Beet necrotic yellow vein furovirus-type papain-like endopeptidase; InterPro: IPR008746 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=90.93  E-value=0.44  Score=37.91  Aligned_cols=65  Identities=17%  Similarity=0.406  Sum_probs=46.9

Q ss_pred             eCCCCchhhHHHHHHHhhccCCCCcchHHHHHHHHHHHHhcCccccccccccccccchhhhhhhhhhHHHHHHHhc--cC
Q 020732          176 IKPDGHCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFENYCKEVE--ST  253 (322)
Q Consensus       176 I~~DGnCLFrAIa~QL~~~~~~~~~~~~~~LR~~~a~yi~~n~d~F~pfl~~~~~~~~~~~~~~~~~~~~Y~~~m~--~~  253 (322)
                      |..|.|||.-||+..|+.        +...|...    |..|                      ...+..||.+++  .+
T Consensus         3 ~sR~NNCLVVAis~~L~~--------T~e~l~~~----M~An----------------------~~~i~~y~~W~r~~~~   48 (104)
T PF05415_consen    3 ASRPNNCLVVAISECLGV--------TLEKLDNL----MQAN----------------------VSTIKKYHTWLRKKRP   48 (104)
T ss_pred             ccCCCCeEeehHHHHhcc--------hHHHHHHH----HHhh----------------------HHHHHHHHHHHhcCCC
Confidence            467999999999999975        23344333    2222                      236889999976  56


Q ss_pred             CccCchHHHHHHHHhhcCcEEEEE
Q 020732          254 AAWGGELELRALTHCLRKHIMIYS  277 (322)
Q Consensus       254 ~~WGG~lEL~ALA~~l~~~I~V~~  277 (322)
                      .+|-+   ...+|..|++.|.|--
T Consensus        49 STW~D---C~mFA~~LkVsm~vkV   69 (104)
T PF05415_consen   49 STWDD---CRMFADALKVSMQVKV   69 (104)
T ss_pred             CcHHH---HHHHHHhheeEEEEEE
Confidence            78976   4589999999988744

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases correspond to MEROPS peptidase family C36 (clan CA). The type example is beet necrotic yellow vein furovirus-type papain-like endopeptidase (beet necrotic yellow vein virus), which is involved in processing the viral polyprotein.

>PF14282 FlxA: FlxA-like protein

Probab=84.02  E-value=12  Score=30.49  Aligned_cols=61  Identities=18%  Similarity=0.336  Sum_probs=46.7

Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHhhhccCChhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 020732           28 DEMLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAKELASL   89 (322)
Q Consensus        28 e~l~~rHrkE~k~Lq~~i~~~kk~~~k~~k~~~Kk~kK~v~~e~~~le~el~~rh~~El~~l   89 (322)
                      +....+=.+.++.|+.+|..+.....- +-..++.+.+.+..+|..|++.|...+...-..-
T Consensus        18 ~~~I~~L~~Qi~~Lq~ql~~l~~~~~~-~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~~~~~   78 (106)
T PF14282_consen   18 DSQIEQLQKQIKQLQEQLQELSQDSDL-DAEQKQQQIQLLQAQIQQLQAQIAQLQSQQAEQQ   78 (106)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcccCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            677888899999999999998864221 2223356779999999999999998877665543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	322
3pfy_A	185	OTU domain-containing protein 5; structural genomi	1e-36
3by4_A	212	OTU1, ubiquitin thioesterase OTU1; ubiquitin hydro	1e-26
3phx_A	185	RNA-directed RNA polymerase L; OTU domain, DE-ubiq	4e-26
3phu_A	219	RNA-directed RNA polymerase L; OTU domain, DE-ubiq	5e-22
1tff_A	234	Ubiquitin thiolesterase protein OTUB2; hydrolase;	3e-11
2zfy_A	234	Ubiquitin thioesterase OTUB1; otubain, structural	5e-10
4dhi_B	284	Ubiquitin thioesterase otubain-like; ubiquitin E2	2e-04

>3pfy_A OTU domain-containing protein 5; structural genomics, structural genomics consortium, SGC, PE C65 otubain, hydrolase; HET: MSE PG4; 1.70A {Homo sapiens} PDB: 3tmp_A* 3tmo_A* Length = 185

 Score =  129 bits (325), Expect = 1e-36
 Identities = 37/209 (17%), Positives = 66/209 (31%), Gaps = 31/209 (14%)

Query: 117 QHDQAKPSKGTKRREKRAQQEAAREQRIQ---EEQSNIVSDRTVEDEKLEKKLGPLGLTV 173
            H     S       + A   +  E        E  +  +    E    +      G  +
Sbjct: 2   HHHHHHSSGRENLYFQGAGYNSEDEYEAAAARIEAMDPATVEQQEHWFEKALRDKKGFII 61

Query: 174 NDIKPDGHCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSSDFLPFYLSENMIGE 233
             +K DG CL+RAV DQ+            + +R+    Y+  ++  F  +   +     
Sbjct: 62  KQMKEDGACLFRAVADQVYG-----DQDMHEVVRKHCMDYLMKNADYFSNYVTED----- 111

Query: 234 ESAQSQVERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEYSNGG 293
                    F  Y          G  +E++A+     + + +Y  S   +          
Sbjct: 112 ---------FTTYINRKRKNNCHGNHIEMQAMAEMYNRPVEVYQYSTEPINTFHGIHQ-- 160

Query: 294 SDSSGSSIILSYHRHAFGLGEHYNSVIPI 322
             +    I +SYHR+      HYNSV+  
Sbjct: 161 --NEDEPIRVSYHRN-----IHYNSVVNP 182

>3by4_A OTU1, ubiquitin thioesterase OTU1; ubiquitin hydrolase, deubiquitinase, cell cycle, hydrolase; 1.55A {Saccharomyces cerevisiae} PDB: 3c0r_A Length = 212

 Score =  103 bits (258), Expect = 1e-26
 Identities = 29/164 (17%), Positives = 62/164 (37%), Gaps = 31/164 (18%)

Query: 158 EDEKLEKKLGPLGLTVNDIKPDGHCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDH 217
             E      G   L+V+ +  D  CL+ A+   +          + + LR+MV+  + ++
Sbjct: 7   STEMSIGGSGENVLSVHPVLDDNSCLFHAIAYGIFK------QDSVRDLREMVSKEVLNN 60

Query: 218 SSDFLPFYLSENMIGEESAQSQVERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYS 277
              F    L +               ++Y + +    +WGG +E+  ++  L   I +  
Sbjct: 61  PVKFNDAILDKP-------------NKDYAQWILKMESWGGAIEIGIISDALAVAIYVV- 106

Query: 278 GSFPDVEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVIP 321
               D++  K       D   + I++ ++      G HY+S+  
Sbjct: 107 ----DIDAVK-IEKFNEDKFDNYILILFN------GIHYDSLTM 139

>3phx_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Crimean-congo hemorrhagic fever virus} PDB: 3phw_A 3pt2_A 3pse_A 3prp_A 3prm_A Length = 185

 Score =  101 bits (253), Expect = 4e-26
 Identities = 20/152 (13%), Positives = 46/152 (30%), Gaps = 22/152 (14%)

Query: 171 LTVNDIKPDGHCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSSDFLPFYLSENM 230
             +     DG+C Y ++ +                    +       +  +        +
Sbjct: 31  FEIVRQPGDGNCFYHSIAELTMPNKT-------DHSYHYIKRLTESAARKYYQEEPEARL 83

Query: 231 IGEESAQSQVERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEYS 290
           +G           E+Y K + S   WG  LE   L   +   I+I++ +  D        
Sbjct: 84  VGLS--------LEDYLKRMLSDNEWGSTLEASMLAKEMGITIIIWTVAASDEVEAGI-- 133

Query: 291 NGGSDSSGSSIILSYHRHAFGLGEHYNSVIPI 322
             G     +++ L +         H++++  +
Sbjct: 134 KFGDGDVFTAVNLLHSG-----QTHFDALRIL 160

>3phu_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase; 2.20A {Crimean-congo hemorrhagic fever VIRUSIBAR10200} Length = 219

 Score = 91.4 bits (226), Expect = 5e-22
 Identities = 20/152 (13%), Positives = 47/152 (30%), Gaps = 22/152 (14%)

Query: 171 LTVNDIKPDGHCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSSDFLPFYLSENM 230
             +     DG+C Y ++ +                    +       +  +        +
Sbjct: 31  FEIVRQPGDGNCFYHSIAELTMPNKTD-------HSYHYIKRLTESAARKYYQEEPEARL 83

Query: 231 IGEESAQSQVERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEYS 290
           +G           E+Y K + S   WG  LE   L   +   I+I++ +  D    +   
Sbjct: 84  VGLS--------LEDYLKRMLSDNEWGSTLEASMLAKEMGITIIIWTVAASDEV--EAGI 133

Query: 291 NGGSDSSGSSIILSYHRHAFGLGEHYNSVIPI 322
             G     +++ L +         H++++  +
Sbjct: 134 KFGDGDVFTAVNLLHSG-----QTHFDALRIL 160

>1tff_A Ubiquitin thiolesterase protein OTUB2; hydrolase; 2.10A {Homo sapiens} SCOP: d.3.1.11 Length = 234

 Score = 61.6 bits (149), Expect = 3e-11
 Identities = 37/190 (19%), Positives = 69/190 (36%), Gaps = 30/190 (15%)

Query: 135 QQEAAREQRIQEEQSNIVSDRTVEDEKLEKKLGPLGLTVNDIKPDG--HCLYRAVEDQLA 192
            +E  + +    +  N +     E+ K           V  ++ DG    L +   DQ  
Sbjct: 68  SREIFKFKERVLQTPNDLLAAGFEEHKFRNFFNAFYSVVELVEKDGSVSSLLKVFNDQ-- 125

Query: 193 HLSGGASPYNFQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFENYC-KEVE 251
                AS +  Q LR + +A++R+ +  F  F      I EE         +++C  EVE
Sbjct: 126 ----SASDHIVQFLRLLTSAFIRNRADFFRHF------IDEEMD------IKDFCTHEVE 169

Query: 252 STAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEYSNGGSDSSGSSIILSYHRHAFG 311
             A     +++ AL+  L   + +    + D        +   +++  S+ L Y      
Sbjct: 170 PMATECDHIQITALSQALSIALQVE---YVDEMDTALNHHVFPEAATPSVYLLYK----- 221

Query: 312 LGEHYNSVIP 321
              HYN +  
Sbjct: 222 -TSHYNILYA 230

>2zfy_A Ubiquitin thioesterase OTUB1; otubain, structural genomics, structural genomics consortium, SGC, alternative splicing, hydrolase, immune response; 1.69A {Homo sapiens} PDB: 4ddg_B 4ddi_A Length = 234

 Score = 57.8 bits (139), Expect = 5e-10
 Identities = 29/188 (15%), Positives = 55/188 (29%), Gaps = 29/188 (15%)

Query: 133 RAQQEAAREQRIQEEQSNIVSDRTVEDEKLEKKLGPLGLTVNDIKPD--GHCLYRAVEDQ 190
              +E  R + +  +    +  +   +  +E         +  ++       L  +  DQ
Sbjct: 69  DDSKELQRFKAVSAKSKEDLVSQGFTEFTIEDFHNTFMDLIEQVEKQTSVADLLASFNDQ 128

Query: 191 LAHLSGGASPYNFQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFENYC-KE 249
                   S Y    LR + + Y++  S  F  F                   + +C +E
Sbjct: 129 ------STSDYLVVYLRLLTSGYLQRESKFFEHFIEGG------------RTVKEFCQQE 170

Query: 250 VESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEYSNGGSDSSGSSIILSYHRHA 309
           VE        + + AL   L   I +        E G    +   + S   + L Y    
Sbjct: 171 VEPMCKESDHIHIIALAQALSVSIQVE--YMDRGEGGTTNPHIFPEGSEPKVYLLYR--- 225

Query: 310 FGLGEHYN 317
                HY+
Sbjct: 226 ---PGHYD 230

>4dhi_B Ubiquitin thioesterase otubain-like; ubiquitin E2 enzyme fold, ubiquitination, hydrolase-ligase C; 1.80A {Caenorhabditis elegans} PDB: 4dhj_A 4dhz_A Length = 284

 Score = 41.3 bits (96), Expect = 2e-04
 Identities = 24/155 (15%), Positives = 46/155 (29%), Gaps = 33/155 (21%)

Query: 173 VNDIKPDGHCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSSDFLPFYLSENMIG 232
           ++        +Y  + D       G++ Y     R + +A+++ +S ++ PF      I 
Sbjct: 146 IHSGVHTEEAVYTILNDD------GSANYILMFFRLITSAFLKQNSEEYAPF------ID 193

Query: 233 EESAQSQVERFENYC-KEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEYSN 291
           E            YC +E+E        L + +L       + I    + D         
Sbjct: 194 EGMT------VAQYCEQEIEPMWKDADHLAINSLIKAAGTRVRIE---YMDRTAAPNGGW 244

Query: 292 -----GGSDSSGSSIILSYHRHAFGLGEHYNSVIP 321
                         I L Y         HY+ +  
Sbjct: 245 HYDIPSDDQQIAPEITLLYR------PGHYDVIYK 273

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	322
3pfy_A	185	OTU domain-containing protein 5; structural genomi	100.0
3by4_A	212	OTU1, ubiquitin thioesterase OTU1; ubiquitin hydro	100.0
3phx_A	185	RNA-directed RNA polymerase L; OTU domain, DE-ubiq	99.97
3phu_A	219	RNA-directed RNA polymerase L; OTU domain, DE-ubiq	99.97
1tff_A	234	Ubiquitin thiolesterase protein OTUB2; hydrolase;	99.94
2zfy_A	234	Ubiquitin thioesterase OTUB1; otubain, structural	99.91
4dhi_B	284	Ubiquitin thioesterase otubain-like; ubiquitin E2	99.87
4ddg_A	399	Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI	99.85
3dkb_A	390	Tumor necrosis factor, alpha-induced protein 3; OT	98.71
3zrh_A	454	Ubiquitin thioesterase zranb1; hydrolase, deubiqui	98.61

>3pfy_A OTU domain-containing protein 5; structural genomics, structural genomics consortium, SGC, PE C65 otubain, hydrolase; HET: MSE PG4; 1.70A {Homo sapiens} PDB: 3tmp_A* 3tmo_A*

Probab=100.00  E-value=4.6e-40  Score=292.09  Aligned_cols=145  Identities=23%  Similarity=0.399  Sum_probs=111.2

Q ss_pred             HHhcccCCchhHHHHHHHHhccCCCeeeeeCCCCchhhHHHHHHHhhccCCCCcchHHHHHHHHHHHHhcCccccccccc
Q 020732          147 EQSNIVSDRTVEDEKLEKKLGPLGLTVNDIKPDGHCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSSDFLPFYL  226 (322)
Q Consensus       147 e~~~~~~~r~~E~~~l~~~L~~~gL~i~~I~~DGnCLFrAIa~QL~~~~~~~~~~~~~~LR~~~a~yi~~n~d~F~pfl~  226 (322)
                      |+...+..+..|..-+..+|..+||.++.||+|||||||||++||++     .+..|..||+.||+||+.|+++|.|||.
T Consensus        35 ~~~~~~~~~~~e~~~~~~l~~~~gL~~~~I~~DGnCLFrAia~qL~g-----~~~~h~~LR~~vv~yi~~n~d~f~~Fv~  109 (185)
T 3pfy_A           35 EAMDPATVEQQEHWFEKALRDKKGFIIKQMKEDGACLFRAVADQVYG-----DQDMHEVVRKHCMDYLMKNADYFSNYVT  109 (185)
T ss_dssp             --CCHHHHHHHHHHHHHHHHHHHCCEEECCCCSTTHHHHHHHHHHHS-----CGGGHHHHHHHHHHHHHHTHHHHTTCC-
T ss_pred             HhccCCCHHHHHHHHHHHHHHHCCcEEEeeCCCCChHHHHHHHHHhC-----CchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            44445566899999999999999999999999999999999999998     4678999999999999999999999995


Q ss_pred             cccccchhhhhhhhhhHHHHHHHhccCCccCchHHHHHHHHhhcCcEEEEECCCCceE-e-CCCCCCCCCCCCCCeEEEE
Q 020732          227 SENMIGEESAQSQVERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVE-M-GKEYSNGGSDSSGSSIILS  304 (322)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~Y~~~m~~~~~WGG~lEL~ALA~~l~~~I~V~~~~~~~~~-~-g~e~~~~~~~~~~~~I~L~  304 (322)
                      .              +|++||.+|+++++|||++||+|||++|+++|+||+.+++++. + |.+.      ...++|+|+
T Consensus       110 ~--------------~~e~Y~~~m~~~~~WGg~iEL~AlS~~~~v~I~V~~~~~~~i~i~~g~~~------~~~~~I~L~  169 (185)
T 3pfy_A          110 E--------------DFTTYINRKRKNNCHGNHIEMQAMAEMYNRPVEVYQYSTEPINTFHGIHQ------NEDEPIRVS  169 (185)
T ss_dssp             ------------------------------CCHHHHHHHHHHHTSCEEEESSCSSCSEEECTTSC------CTTSCEEEE
T ss_pred             c--------------cHHHHHHHhhCCCccchHHHHHHHHHhhCCcEEEEECCCCCeEEecCccC------CCCCEEEEE
Confidence            3              5999999999999999999999999999999999998875544 3 3222      236899999


Q ss_pred             eccCCCCCCCccccccc
Q 020732          305 YHRHAFGLGEHYNSVIP  321 (322)
Q Consensus       305 Y~~~~y~LGeHYnSv~p  321 (322)
                      ||+     |+|||||++
T Consensus       170 Y~~-----~~HYnSv~~  181 (185)
T 3pfy_A          170 YHR-----NIHYNSVVN  181 (185)
T ss_dssp             EET-----TTEEEEEEC
T ss_pred             ECC-----CCCcccccC
Confidence            998     599999985

>3by4_A OTU1, ubiquitin thioesterase OTU1; ubiquitin hydrolase, deubiquitinase, cell cycle, hydrolase; 1.55A {Saccharomyces cerevisiae} PDB: 3c0r_A

Probab=100.00  E-value=1.8e-35  Score=268.07  Aligned_cols=123  Identities=20%  Similarity=0.385  Sum_probs=109.3

Q ss_pred             ccCCCeeeeeCCCCchhhHHHHHHHhhccCCCCcchHHHHHHHHHHHHhcCccccccccccccccchhhhhhhhhhHHHH
Q 020732          167 GPLGLTVNDIKPDGHCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFENY  246 (322)
Q Consensus       167 ~~~gL~i~~I~~DGnCLFrAIa~QL~~~~~~~~~~~~~~LR~~~a~yi~~n~d~F~pfl~~~~~~~~~~~~~~~~~~~~Y  246 (322)
                      ...||.+++||+|||||||||++|| +     .+..|..||+.||+||+.|+++|.+|+.+             .+|++|
T Consensus        16 ~~~~l~~~~i~~DGnCLFrAva~qL-~-----~~~~~~~lR~~vv~yi~~n~d~f~e~~~~-------------~~~e~Y   76 (212)
T 3by4_A           16 GENVLSVHPVLDDNSCLFHAIAYGI-F-----KQDSVRDLREMVSKEVLNNPVKFNDAILD-------------KPNKDY   76 (212)
T ss_dssp             CCSEEEEECCCCSTTHHHHHHHHHH-H-----SSCCSHHHHHHHHHHHHHCTTTTCHHHHT-------------SCHHHH
T ss_pred             CCCCeEEEEeCCCCchHHHHHHHHh-C-----CchHHHHHHHHHHHHHHHCHHHHhhhhcC-------------CCHHHH
Confidence            4568999999999999999999999 5     35689999999999999999999877754             369999


Q ss_pred             HHHhccCCccCchHHHHHHHHhhcCcEEEEECCC-CceEeCCCCCCCCCCCCCCeEEEEeccCCCCCCCccccccc
Q 020732          247 CKEVESTAAWGGELELRALTHCLRKHIMIYSGSF-PDVEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVIP  321 (322)
Q Consensus       247 ~~~m~~~~~WGG~lEL~ALA~~l~~~I~V~~~~~-~~~~~g~e~~~~~~~~~~~~I~L~Y~~~~y~LGeHYnSv~p  321 (322)
                      |.+|+++++|||++||+|||++|++||.||+..+ +.+.||+++       ..++|+|+|+      |+|||||++
T Consensus        77 ~~~m~~~~~WGg~iEL~Als~~~~~~I~V~~~~~~~~~~~~~~~-------~~~~I~L~Y~------g~HYdsl~~  139 (212)
T 3by4_A           77 AQWILKMESWGGAIEIGIISDALAVAIYVVDIDAVKIEKFNEDK-------FDNYILILFN------GIHYDSLTM  139 (212)
T ss_dssp             HHHTTSTTSCCCHHHHHHHHHHHTCEEEEEETTTTEEEEESTTT-------CSEEEEEEEC------SSCEEEEEE
T ss_pred             HHHhcCCCEEccHHHHHHHHHHHCCCEEEEECCCCCeEEeCCCC-------CCCeEEEEEc------CCcceEEec
Confidence            9999999999999999999999999999999874 666788654       2679999997      799999975

>3phx_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Crimean-congo hemorrhagic fever virus} PDB: 3phw_A 3pt2_A 3pse_A 3prp_A 3prm_A

Probab=99.97  E-value=1.6e-31  Score=237.39  Aligned_cols=120  Identities=17%  Similarity=0.308  Sum_probs=100.3

Q ss_pred             CeeeeeCCCCchhhHHHHHHHhhccCCCCcch-----HHHHHHHHHHHHhcCccccccccccccccchhhhhhhhhhHHH
Q 020732          171 LTVNDIKPDGHCLYRAVEDQLAHLSGGASPYN-----FQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFEN  245 (322)
Q Consensus       171 L~i~~I~~DGnCLFrAIa~QL~~~~~~~~~~~-----~~~LR~~~a~yi~~n~d~F~pfl~~~~~~~~~~~~~~~~~~~~  245 (322)
                      +.+..||||||||||||++||++..    +..     |..||+.|++||++|+++|   +.             ..+|++
T Consensus        31 ~~v~rv~gDGnCLFrAva~qL~~~~----~~~~~~~~~~~LR~~~~~yi~~~~~~~---~~-------------~~~~~~   90 (185)
T 3phx_A           31 FEIVRQPGDGNCFYHSIAELTMPNK----TDHSYHYIKRLTESAARKYYQEEPEAR---LV-------------GLSLED   90 (185)
T ss_dssp             EEEECCCSSTTHHHHHHHHHHSTTC----CTTTHHHHHHHHHHHHHHHGGGCTTHH---HH-------------CCCHHH
T ss_pred             eEEEccCCCCchHHHHHHHHHhCCC----ccchhhhHHHHHHHHHHHHHHhChHhh---hc-------------CCCHHH
Confidence            7788999999999999999998741    234     8999999999999999983   22             147999


Q ss_pred             HHHHhccCCccCchHHHHHHHHhhcCcEEEEECCCCc-----eEeCCCCCCCCCCCCCCeEEEEeccCCCCCCCcccccc
Q 020732          246 YCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPD-----VEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVI  320 (322)
Q Consensus       246 Y~~~m~~~~~WGG~lEL~ALA~~l~~~I~V~~~~~~~-----~~~g~e~~~~~~~~~~~~I~L~Y~~~~y~LGeHYnSv~  320 (322)
                      ||++|+++++|||++||+|||++|+++|+|++.+++.     +.||++.       ..++|+|+|++     |+|||||+
T Consensus        91 Y~~~m~~~~~WGg~iEL~Als~~~~v~I~V~~~d~~~~~~~i~~f~~~~-------~~~~I~L~Y~g-----~~HYdsl~  158 (185)
T 3phx_A           91 YLKRMLSDNEWGSTLEASMLAKEMGITIIIWTVAASDEVEAGIKFGDGD-------VFTAVNLLHSG-----QTHFDALR  158 (185)
T ss_dssp             HHHHHTSTTCCCBHHHHHHHHHHHCCCEEEEEC--CCBCCEEEEESSCC-------TTTSEEEEEET-----TTEEEEEE
T ss_pred             HHHHhhCCCccCcHHHHHHHHHHHCCcEEEEEecCCCCceEEEEcCCCC-------CCCEEEEEECC-----CcCchhce
Confidence            9999999999999999999999999999999987654     4466432       26899999984     59999998


Q ss_pred             cC
Q 020732          321 PI  322 (322)
Q Consensus       321 p~  322 (322)
                      |+
T Consensus       159 ~~  160 (185)
T 3phx_A          159 IL  160 (185)
T ss_dssp             EC
T ss_pred             EC
Confidence            74

>3phu_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase; 2.20A {Crimean-congo hemorrhagic fever VIRUSIBAR10200}

Probab=99.97  E-value=1.8e-31  Score=242.43  Aligned_cols=120  Identities=16%  Similarity=0.296  Sum_probs=102.1

Q ss_pred             CeeeeeCCCCchhhHHHHHHHhhccCCCCcch-----HHHHHHHHHHHHhcCccccccccccccccchhhhhhhhhhHHH
Q 020732          171 LTVNDIKPDGHCLYRAVEDQLAHLSGGASPYN-----FQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFEN  245 (322)
Q Consensus       171 L~i~~I~~DGnCLFrAIa~QL~~~~~~~~~~~-----~~~LR~~~a~yi~~n~d~F~pfl~~~~~~~~~~~~~~~~~~~~  245 (322)
                      +.+.+||||||||||||++||++..    +..     |..||+.|++||+.|+++|   +.             ..+|++
T Consensus        31 ~~V~rvpgDGnCLFrAVs~qL~~~~----~~~~~~~~h~~LR~~va~yi~~n~d~~---~~-------------~~~fee   90 (219)
T 3phu_A           31 FEIVRQPGDGNCFYHSIAELTMPNK----TDHSYHYIKRLTESAARKYYQEEPEAR---LV-------------GLSLED   90 (219)
T ss_dssp             EEEECCCCSSCHHHHHHHHHHCTTC----CTTTHHHHHHHHHHHHHHHGGGCHHHH---HH-------------CCCHHH
T ss_pred             eEEEccCCCCchHHHHHHHHHhCCC----ccchhhhHHHHHHHHHHHHHHhChhhh---hc-------------CCCHHH
Confidence            7889999999999999999998741    233     8999999999999999983   22             147999


Q ss_pred             HHHHhccCCccCchHHHHHHHHhhcCcEEEEECCCC-----ceEeCCCCCCCCCCCCCCeEEEEeccCCCCCCCcccccc
Q 020732          246 YCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFP-----DVEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVI  320 (322)
Q Consensus       246 Y~~~m~~~~~WGG~lEL~ALA~~l~~~I~V~~~~~~-----~~~~g~e~~~~~~~~~~~~I~L~Y~~~~y~LGeHYnSv~  320 (322)
                      ||++|+++++|||++||+|||++|+++|+||+.+++     .+.||++.       ..++|+|+|++     |+|||||+
T Consensus        91 Y~~~m~~~g~WGG~iEL~AlS~~~~v~I~V~~~d~~g~~~~i~~fge~~-------~~~~I~L~Y~g-----~~HYdSL~  158 (219)
T 3phu_A           91 YLKRMLSDNEWGSTLEASMLAKEMGITIIIWTVAASDEVEAGIKFGDGD-------VFTAVNLLHSG-----QTHFDALR  158 (219)
T ss_dssp             HHHHHHSTTCCCCHHHHHHHHHHTTCCEEEEEESSSSBEEEEEEESSCC-------TTTSEEEEEET-----TTEEEEEE
T ss_pred             HHHHhcCCCccCCHHHHHHHHHHhCCCEEEEEecCCCCceeEEEecCCC-------CCCeEEEEECC-----CcCchhhe
Confidence            999999999999999999999999999999998766     34566542       26899999985     59999998


Q ss_pred             cC
Q 020732          321 PI  322 (322)
Q Consensus       321 p~  322 (322)
                      |+
T Consensus       159 ~~  160 (219)
T 3phu_A          159 IL  160 (219)
T ss_dssp             EC
T ss_pred             EC
Confidence            74

>1tff_A Ubiquitin thiolesterase protein OTUB2; hydrolase; 2.10A {Homo sapiens} SCOP: d.3.1.11

Probab=99.94  E-value=5.5e-27  Score=215.25  Aligned_cols=99  Identities=23%  Similarity=0.362  Sum_probs=79.9

Q ss_pred             hHHHHHHHHHHHHhcCccccccccccccccchhhhhhhhhhHHHHHH-HhccCCccCchHHHHHHHHhhcCcEEEEECCC
Q 020732          202 NFQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFENYCK-EVESTAAWGGELELRALTHCLRKHIMIYSGSF  280 (322)
Q Consensus       202 ~~~~LR~~~a~yi~~n~d~F~pfl~~~~~~~~~~~~~~~~~~~~Y~~-~m~~~~~WGG~lEL~ALA~~l~~~I~V~~~~~  280 (322)
                      .+..||..++.||+.|+++|.|||.++            .+|++||. .|+.+++|||++||+|||++|++||.|++.++
T Consensus       131 iv~~lR~lta~~i~~~~d~f~pFi~~~------------~~~~~yC~~~ve~~~~~~~~iei~ALa~aL~v~I~V~~~d~  198 (234)
T 1tff_A          131 IVQFLRLLTSAFIRNRADFFRHFIDEE------------MDIKDFCTHEVEPMATECDHIQITALSQALSIALQVEYVDE  198 (234)
T ss_dssp             HHHHHHHHHHHHHHHTHHHHGGGSCTT------------SCHHHHHHHHTSSTTCCCCHHHHHHHHHHHTCCEEEEECC-
T ss_pred             HHHHHHHHHHHHHHHCHHHHhhhhcCC------------CCHHHHHHHHhhhhhcccccHHHHHHHHHhCCCEEEEEcCC
Confidence            357799999999999999999999652            26999999 79999999999999999999999999999988


Q ss_pred             CceE-eCCCCCCCCCCCCCCeEEEEeccCCCCCCCcccccccC
Q 020732          281 PDVE-MGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVIPI  322 (322)
Q Consensus       281 ~~~~-~g~e~~~~~~~~~~~~I~L~Y~~~~y~LGeHYnSv~p~  322 (322)
                      +... ....|..    ...+.|+|+|+.      +|||+|+|.
T Consensus       199 ~~~~~~~~~~~~----~~~~~I~LlY~p------gHYdily~~  231 (234)
T 1tff_A          199 MDTALNHHVFPE----AATPSVYLLYKT------SHYNILYAA  231 (234)
T ss_dssp             ------CCCCCC----CSSCSEEEEEET------TEEEEEEEC
T ss_pred             CCCccccccCCC----CCCCeEEEEECC------CCceecccC
Confidence            7522 2223432    346789999984      699999984

>2zfy_A Ubiquitin thioesterase OTUB1; otubain, structural genomics, structural genomics consortium, SGC, alternative splicing, hydrolase, immune response; 1.69A {Homo sapiens} PDB: 4ddg_B 4ddi_A

Probab=99.91  E-value=4.9e-25  Score=202.25  Aligned_cols=98  Identities=19%  Similarity=0.290  Sum_probs=81.1

Q ss_pred             hHHHHHHHHHHHHhcCccccccccccccccchhhhhhhhhhHHHHHH-HhccCCccCchHHHHHHHHhhcCcEEEEECCC
Q 020732          202 NFQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFENYCK-EVESTAAWGGELELRALTHCLRKHIMIYSGSF  280 (322)
Q Consensus       202 ~~~~LR~~~a~yi~~n~d~F~pfl~~~~~~~~~~~~~~~~~~~~Y~~-~m~~~~~WGG~lEL~ALA~~l~~~I~V~~~~~  280 (322)
                      .+..||..++.||+.|+++|.|||.++            .+|++||. .|+.+++|||++||+|||++|++||.|++.++
T Consensus       134 ~v~~lR~lta~yi~~~~d~f~pFi~~~------------~~~e~yc~~~ve~~~~~~~~i~i~ALa~al~v~I~V~~~d~  201 (234)
T 2zfy_A          134 LVVYLRLLTSGYLQRESKFFEHFIEGG------------RTVKEFCQQEVEPMCKESDHIHIIALAQALSVSIQVEYMDR  201 (234)
T ss_dssp             HHHHHHHHHHHHHHHTHHHHGGGCCSS------------CCHHHHHHHHTSSTTCCCCHHHHHHHHHHHTCCEEEEECC-
T ss_pred             HHHHHHHHHHHHHHHCHHHHhcccCCC------------CCHHHHHHHHhhhHhhcCCHHHHHHHHHHhCCCEEEEEcCC
Confidence            467899999999999999999999752            36999997 69999999999999999999999999999887


Q ss_pred             Cce--EeCCCCCCCCCCCCCCeEEEEeccCCCCCCCccccccc
Q 020732          281 PDV--EMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVIP  321 (322)
Q Consensus       281 ~~~--~~g~e~~~~~~~~~~~~I~L~Y~~~~y~LGeHYnSv~p  321 (322)
                      +..  +.+..|..    +..++|+|+|+.      +|||+|+|
T Consensus       202 ~~~~~v~~~~f~~----~~~p~I~LlY~p------gHYdiLy~  234 (234)
T 2zfy_A          202 GEGGTTNPHIFPE----GSEPKVYLLYRP------GHYDILYK  234 (234)
T ss_dssp             CCSSCCEEEEEST----TCCCSEEEEEET------TEEEEEEC
T ss_pred             CCCCcccceeCCC----CCCCeEEEEECC------CCcccCCC
Confidence            641  22234432    236789999985      59999997

>4dhi_B Ubiquitin thioesterase otubain-like; ubiquitin E2 enzyme fold, ubiquitination, hydrolase-ligase C; 1.80A {Caenorhabditis elegans} PDB: 4dhj_A 4dhz_A

Probab=99.87  E-value=5.6e-23  Score=192.48  Aligned_cols=146  Identities=19%  Similarity=0.292  Sum_probs=107.2

Q ss_pred             hHHHHHHHHhccCCCeeeeeCCCCchhhHHHHHHHhhcc-----------------------CCC---------------
Q 020732          157 VEDEKLEKKLGPLGLTVNDIKPDGHCLYRAVEDQLAHLS-----------------------GGA---------------  198 (322)
Q Consensus       157 ~E~~~l~~~L~~~gL~i~~I~~DGnCLFrAIa~QL~~~~-----------------------~~~---------------  198 (322)
                      +=..++..+- ..--.++.|.|||||+|||++..+...-                       .|.               
T Consensus        64 ~~~~Ki~~L~-~~Y~~~R~~RGDGNCFyRAf~F~ylE~Ll~~~~e~~r~~~~~~~s~~~L~~~G~~~~~~eDF~d~f~el  142 (284)
T 4dhi_B           64 AFLSKATELS-EVYGEIRYIRGDGNCFYRAILVGLIEIMLKDRARLEKFIASSRDWTRTLVELGFPDWTCTDFCDFFIEF  142 (284)
T ss_dssp             HHHHHHHHHH-TTEEEEECBCCSTTHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH-HhccceeeecCCCchhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHCCCchhhHHHHHHHHHHH
Confidence            4445554443 3445688999999999999998764320                       000               


Q ss_pred             -----------------------CcchHHHHHHHHHHHHhcCccccccccccccccchhhhhhhhhhHHHHHH-HhccCC
Q 020732          199 -----------------------SPYNFQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFENYCK-EVESTA  254 (322)
Q Consensus       199 -----------------------~~~~~~~LR~~~a~yi~~n~d~F~pfl~~~~~~~~~~~~~~~~~~~~Y~~-~m~~~~  254 (322)
                                             +..-+..||..++.||+.|+++|.|||.++            .++++||. .|+.++
T Consensus       143 l~~i~~~~~~~~~L~~~Fnd~~~S~~iv~~LRllts~yi~~~~d~f~pFi~~~------------~~v~~yC~~eVe~~~  210 (284)
T 4dhi_B          143 LEKIHSGVHTEEAVYTILNDDGSANYILMFFRLITSAFLKQNSEEYAPFIDEG------------MTVAQYCEQEIEPMW  210 (284)
T ss_dssp             HHHHHHTCSCHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHTHHHHGGGSCTT------------CCHHHHHHHHTSSTT
T ss_pred             HHHHhcCCCcHHHHHHHhcCcccchHHHHHHHHHHHHHHHHCHHHHHhhcCCC------------CCHHHHHHHhceehh
Confidence                                   112367899999999999999999999752            36999999 799999


Q ss_pred             ccCchHHHHHHHHhhcCcEEEEECCCC---ceEeCCCCCCCCCCCCCCeEEEEeccCCCCCCCcccccccC
Q 020732          255 AWGGELELRALTHCLRKHIMIYSGSFP---DVEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVIPI  322 (322)
Q Consensus       255 ~WGG~lEL~ALA~~l~~~I~V~~~~~~---~~~~g~e~~~~~~~~~~~~I~L~Y~~~~y~LGeHYnSv~p~  322 (322)
                      .|||+++|+|||++|++||.|++.++.   .+.....| +++.....+.|+|.|..      .|||.|+|.
T Consensus       211 ~e~d~leI~ALa~aL~v~I~V~ylDrs~g~~v~~h~~f-p~~~~~~~p~I~LLYrp------gHYDILY~~  274 (284)
T 4dhi_B          211 KDADHLAINSLIKAAGTRVRIEYMDRTAAPNGGWHYDI-PSDDQQIAPEITLLYRP------GHYDVIYKK  274 (284)
T ss_dssp             CCCCHHHHHHHHHHTTCCEEEEESSGGGCTTSSSEEEE-SCCCSCCCCSEEEEEET------TEEEEEEEC
T ss_pred             hcccHHHHHHHHHHhCCcEEEEEecCCCCCCCcccccC-CCCCCCCCCEEEEeecC------CCccccccC
Confidence            999999999999999999999998752   11110013 11111234789999984      799999873

>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A

Probab=99.85  E-value=2e-21  Score=190.79  Aligned_cols=134  Identities=21%  Similarity=0.307  Sum_probs=103.5

Q ss_pred             hccCCCeeeeeCCCCchhhHHHHHHHhhccC-----------------------CCC-----------------------
Q 020732          166 LGPLGLTVNDIKPDGHCLYRAVEDQLAHLSG-----------------------GAS-----------------------  199 (322)
Q Consensus       166 L~~~gL~i~~I~~DGnCLFrAIa~QL~~~~~-----------------------~~~-----------------------  199 (322)
                      |...--.++.|.|||||+|||+++++.....                       +..                       
T Consensus       203 L~~~y~~~R~vrgDGNCFYRAf~f~ylE~ll~~~~e~~r~~~~~~~~~~~l~~~g~~~~~~edf~~~f~~ll~~i~~~~~  282 (399)
T 4ddg_A          203 LHKKYSYIRKTRPDGNSFYRAFGFSHLEALLDDSKELQRFKAVSAKSKEDLVSQGFTEFTIEDFHNTFMDLIEQVEKQTS  282 (399)
T ss_dssp             HHHHCSEEECBCCSSCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred             HHhhcCeeeeecCCCchHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHccCC
Confidence            3334557899999999999999987765311                       000                       


Q ss_pred             --------------cchHHHHHHHHHHHHhcCccccccccccccccchhhhhhhhhhHHHHHH-HhccCCccCchHHHHH
Q 020732          200 --------------PYNFQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFENYCK-EVESTAAWGGELELRA  264 (322)
Q Consensus       200 --------------~~~~~~LR~~~a~yi~~n~d~F~pfl~~~~~~~~~~~~~~~~~~~~Y~~-~m~~~~~WGG~lEL~A  264 (322)
                                    ..-+..||..++.||+.|+|+|.||+.+.            .++++||. .|..+++|||+++|.|
T Consensus       283 ~~~L~~~fnd~~~s~~iv~~lRllts~~i~~~~d~f~pFi~~~------------~~v~~yc~~~ve~~~~e~d~l~I~A  350 (399)
T 4ddg_A          283 VADLLASFNDQSTSDYLVVYLRLLTSGYLQRESKFFEHFIEGG------------RTVKEFCQQEVEPMCKESDHIHIIA  350 (399)
T ss_dssp             HHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHTHHHHGGGSSSS------------CCHHHHHHHHTSSTTCCBCHHHHHH
T ss_pred             HHHHHHHHhcccchhhHHHHHHHHHHHHHHHCHHHHhcccCCC------------CCHHHHHHHhceeHHhhCcHHHHHH
Confidence                          12357799999999999999999999652            36999999 8999999999999999


Q ss_pred             HHHhhcCcEEEEECCCCc-eEeC-CCCCCCCCCCCCCeEEEEeccCCCCCCCccccccc
Q 020732          265 LTHCLRKHIMIYSGSFPD-VEMG-KEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVIP  321 (322)
Q Consensus       265 LA~~l~~~I~V~~~~~~~-~~~g-~e~~~~~~~~~~~~I~L~Y~~~~y~LGeHYnSv~p  321 (322)
                      ||++|+++|.|+..++.. ..+. ..|.    .+..+.|+|.|..      .|||.|+|
T Consensus       351 La~al~v~I~V~yld~~~~~~v~~~~~~----~~~~~~I~LLYrP------gHYDiLY~  399 (399)
T 4ddg_A          351 LAQALSVSIQVEYMDRGEGGTTNPHIFP----EGSEPKVYLLYRP------GHYDILYK  399 (399)
T ss_dssp             HHHHHTCCCEEEECSCCSSSCCCEEETT----TTCCCCCEEEEET------BEEEEEEC
T ss_pred             HHHHcCCcEEEEEcCCCCCCccceeeCC----CCCCCEEEEEEcC------CccccCCC
Confidence            999999999999876521 1111 1121    1246889999986      59999987

>3dkb_A Tumor necrosis factor, alpha-induced protein 3; OTU domain, DUB domain, apoptosis, cytoplasm, DNA-binding, hydrolase, metal-binding, nucleus; 2.50A {Homo sapiens} PDB: 2vfj_A

Probab=98.71  E-value=3e-08  Score=94.74  Aligned_cols=138  Identities=19%  Similarity=0.293  Sum_probs=85.8

Q ss_pred             CCCeeeeeCCCCchhhHHHHHHHhhccCCCCcchHHHHHHHHHHHHhcCcc-ccc-----------cccccccccchhhh
Q 020732          169 LGLTVNDIKPDGHCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSS-DFL-----------PFYLSENMIGEESA  236 (322)
Q Consensus       169 ~gL~i~~I~~DGnCLFrAIa~QL~~~~~~~~~~~~~~LR~~~a~yi~~n~d-~F~-----------pfl~~~~~~~~~~~  236 (322)
                      ..|......||||||.+|++..++|.     .+....||+...+.|+.... .|.           .|...   +-.++.
T Consensus       110 ~rL~pL~t~GDGnCLLHAvSqamWGv-----~DrdlvLRkaL~~~L~~~~~~~fr~RW~~e~~~~q~~~~~---gL~y~e  181 (390)
T 3dkb_A          110 RKLVALKTNGDGNCLMHATSQYMWGV-----QDTDLVLRKALFSTLKETDTRNFKFRWQLESLKSQEFVET---GLCYDT  181 (390)
T ss_dssp             CCEEEBCCCCSSCHHHHHHHHHHHSS-----CSTTCHHHHHHHHHHHHSCCHHHHHHHHHHHHCCCSSCC-------CCS
T ss_pred             cceEEEEecCCCchHHHHHhHHhcCC-----CCHhHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhhhHhh---cccccH
Confidence            35777889999999999999999994     56678899999999987643 231           11100   000000


Q ss_pred             hhhhhhHHHHHHHhccCCc--------c--CchHHHHHHHHhhcCcEEEEECC-------CC---ceEeCCCCCC---CC
Q 020732          237 QSQVERFENYCKEVESTAA--------W--GGELELRALTHCLRKHIMIYSGS-------FP---DVEMGKEYSN---GG  293 (322)
Q Consensus       237 ~~~~~~~~~Y~~~m~~~~~--------W--GG~lEL~ALA~~l~~~I~V~~~~-------~~---~~~~g~e~~~---~~  293 (322)
                      ..-..+|+.-+. |..+..        +  =-++-+.+||++|++||+||...       |.   ++.||.-|.+   +.
T Consensus       182 ~ew~~EW~~Iv~-~Asp~~~~~~~~~~y~sLEeiHIFvLAhVLRRPIIV~~d~~lr~~~~Ge~~~Pi~f~GIYLPLlwpp  260 (390)
T 3dkb_A          182 RNWNDEWDNLIK-MASTDTPMARSGLQYNSLEEIHIFVLCNILRRPIIVISDKMLRSLESGSNFAPLKVGGIYLPLHWPA  260 (390)
T ss_dssp             SCSSHHHHHHHH-HTSSCCCSSSSSCSSCCCCHHHHHHHHHHTTSCEEEEECCCCTTCCCC----CCCCCEEECCTTSCT
T ss_pred             HHHHHHHHHHHH-HhCCCCCCCCCcchhhhHHHHHHHHHHHHhcCCEEEEechhhccccCCCccCcCccCceecCCcCCH
Confidence            000234544443 333321        1  13678999999999999999632       11   1223322321   12


Q ss_pred             CCCCCCeEEEEeccCCCCCCCccccccc
Q 020732          294 SDSSGSSIILSYHRHAFGLGEHYNSVIP  321 (322)
Q Consensus       294 ~~~~~~~I~L~Y~~~~y~LGeHYnSv~p  321 (322)
                      ......||.|+|.+      .||-+|++
T Consensus       261 ~~C~rsPI~LgY~s------~HFsaLV~  282 (390)
T 3dkb_A          261 QECYRYPIVLGYDS------HHFVPLVT  282 (390)
T ss_dssp             TSSCSSCEEEEECS------SCEEEEEE
T ss_pred             HHccCCceEEEecc------Cceeeeee
Confidence            23456899999997      69999986

>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens}

Probab=98.61  E-value=7.5e-08  Score=93.45  Aligned_cols=139  Identities=19%  Similarity=0.198  Sum_probs=88.1

Q ss_pred             CCeeeeeCCCCchhhHHHHHHHhhccCCCCcchHHHHHHHHHHHHhcCccccccccc------cccccchhhhhhhhhhH
Q 020732          170 GLTVNDIKPDGHCLYRAVEDQLAHLSGGASPYNFQQLRQMVAAYMRDHSSDFLPFYL------SENMIGEESAQSQVERF  243 (322)
Q Consensus       170 gL~i~~I~~DGnCLFrAIa~QL~~~~~~~~~~~~~~LR~~~a~yi~~n~d~F~pfl~------~~~~~~~~~~~~~~~~~  243 (322)
                      .|..-...||||||-+|++..|+|.     .+....||+...+.|......|..-.-      +...+-.+  ..+...|
T Consensus       188 rL~pL~t~GDGNCLLHAvSqamWGV-----~DrdlvLRkaL~~~L~~~~~~f~~RW~~~e~~q~q~~gL~y--~lde~ew  260 (454)
T 3zrh_A          188 RLYALWNRTAGDCLLDSVLQATWGI-----YDKDSVLRKALHDSLHDCSHWFYTRWKDWESWYSQSFGLHF--SLREEQW  260 (454)
T ss_dssp             CEEEBCCCCSSCHHHHHHHHTTTSS-----CCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTCCC--CCCHHHH
T ss_pred             ceeEeeecCCCccHHHHHHHHhhcc-----cCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcCCcc--cccHHHH
Confidence            3667789999999999999999994     567789999999999875444432110      00000000  0012334


Q ss_pred             HHHHH----HhccCCccCchHHHHHHHHhhcCcEEEEECCC---------CceEeCCCCCC---CCCCCCCCeEEEEecc
Q 020732          244 ENYCK----EVESTAAWGGELELRALTHCLRKHIMIYSGSF---------PDVEMGKEYSN---GGSDSSGSSIILSYHR  307 (322)
Q Consensus       244 ~~Y~~----~m~~~~~WGG~lEL~ALA~~l~~~I~V~~~~~---------~~~~~g~e~~~---~~~~~~~~~I~L~Y~~  307 (322)
                      .+..+    ....++.==-++-+.+||++|++||+||....         .++.||.-|.+   +.......||.|+|.+
T Consensus       261 q~EW~~iv~~As~Pg~sLEeiHIFvLAhVLRRPIIV~~d~~lrs~~Ge~l~pi~f~GIYLPLlwpp~~C~rsPIvLgY~~  340 (454)
T 3zrh_A          261 QEDWAFILSLASQPGASLEQTHIFVLAHILRRPIIVYGVKYYKSFRGETLGYTRFQGVYLPLLWEQSFCWKSPIALGYTR  340 (454)
T ss_dssp             HHHHHHHHHHTTSTTCCCCHHHHHHHHHHTTSCEEEEECSSCC-----CCCCCCCCEEECCTTSCGGGSCSCCEEEEEET
T ss_pred             HHHHHHHHHHhcCCcchHHHHHHHHHHHHhcCCeEEeccccccccCCCcCCCcccceeeccCcCCHHHhcCCceEEEecc
Confidence            44444    33445443456779999999999999998642         12223322221   1123446899999997


Q ss_pred             CCCCCCCccccccc
Q 020732          308 HAFGLGEHYNSVIP  321 (322)
Q Consensus       308 ~~y~LGeHYnSv~p  321 (322)
                            .||-+|++
T Consensus       341 ------gHFsaLV~  348 (454)
T 3zrh_A          341 ------GHFSALVA  348 (454)
T ss_dssp             ------TEEEEEEE
T ss_pred             ------cceeeeee
Confidence                  59999886

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	322
d1tffa_	228	d.3.1.11 (A:) Ubiquitin thiolesterase protein OTUB	6e-13

>d1tffa_ d.3.1.11 (A:) Ubiquitin thiolesterase protein OTUB2 (Otubain-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin thiolesterase protein OTUB2 (Otubain-2)
domain: Ubiquitin thiolesterase protein OTUB2 (Otubain-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.0 bits (158), Expect = 6e-13
 Identities = 35/189 (18%), Positives = 65/189 (34%), Gaps = 28/189 (14%)

Query: 135 QQEAAREQRIQEEQSNIVSDRTVEDEKLEKKLGPLGLTVNDIKPDGHC--LYRAVEDQLA 192
            +E  + +    +  N +     E+ K           V  ++ DG    L +   DQ  
Sbjct: 62  SREIFKFKERVLQTPNDLLAAGFEEHKFRNFFNAFYSVVELVEKDGSVSSLLKVFNDQ-- 119

Query: 193 HLSGGASPYNFQQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFENYCKEVES 252
                AS +  Q LR + +A++R+ +  F  F   E  I +               EVE 
Sbjct: 120 ----SASDHIVQFLRLLTSAFIRNRADFFRHFIDEEMDIKDF-----------CTHEVEP 164

Query: 253 TAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEYSNGGSDSSGSSIILSYHRHAFGL 312
            A     +++ AL+  L   + +    + D        +   +++  S+ L Y       
Sbjct: 165 MATECDHIQITALSQALSIALQVE---YVDEMDTALNHHVFPEAATPSVYLLYK------ 215

Query: 313 GEHYNSVIP 321
             HYN +  
Sbjct: 216 TSHYNILYA 224

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	322
d1tffa_	228	Ubiquitin thiolesterase protein OTUB2 (Otubain-2)	99.89

>d1tffa_ d.3.1.11 (A:) Ubiquitin thiolesterase protein OTUB2 (Otubain-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin thiolesterase protein OTUB2 (Otubain-2)
domain: Ubiquitin thiolesterase protein OTUB2 (Otubain-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.2e-23  Score=189.83  Aligned_cols=97  Identities=23%  Similarity=0.394  Sum_probs=76.7

Q ss_pred             HHHHHHHHHHHhcCccccccccccccccchhhhhhhhhhHHHHHHH-hccCCccCchHHHHHHHHhhcCcEEEEECCCCc
Q 020732          204 QQLRQMVAAYMRDHSSDFLPFYLSENMIGEESAQSQVERFENYCKE-VESTAAWGGELELRALTHCLRKHIMIYSGSFPD  282 (322)
Q Consensus       204 ~~LR~~~a~yi~~n~d~F~pfl~~~~~~~~~~~~~~~~~~~~Y~~~-m~~~~~WGG~lEL~ALA~~l~~~I~V~~~~~~~  282 (322)
                      ..||.+++.||+.|++.|.||+..+            .++++||.+ |..+++|||++||.|||++|+++|.|+..+.+.
T Consensus       127 ~~lR~l~s~~i~~~~~~y~~Fi~~~------------~~~~~yc~~~v~~~~~e~d~ieI~aLa~al~v~I~V~~~d~~~  194 (228)
T d1tffa_         127 QFLRLLTSAFIRNRADFFRHFIDEE------------MDIKDFCTHEVEPMATECDHIQITALSQALSIALQVEYVDEMD  194 (228)
T ss_dssp             HHHHHHHHHHHHHTHHHHGGGSCTT------------SCHHHHHHHHTSSTTCCCCHHHHHHHHHHHTCCEEEEECC---
T ss_pred             HHHHHHHHHHHHHCHHHHHhHhcCC------------ccHHHHHHHHHccccccCCcHHHHHHHHHhCCCEEEEEecCCC
Confidence            4589999999999999999999653            368999986 999999999999999999999999999987654


Q ss_pred             eEeCC-CCCCCCCCCCCCeEEEEeccCCCCCCCcccccccC
Q 020732          283 VEMGK-EYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVIPI  322 (322)
Q Consensus       283 ~~~g~-e~~~~~~~~~~~~I~L~Y~~~~y~LGeHYnSv~p~  322 (322)
                      ..+.. .|    +....++|+|+|.      +.|||.|+|.
T Consensus       195 ~~~~~~~~----~~~~~~~I~Lly~------pgHYdiLY~~  225 (228)
T d1tffa_         195 TALNHHVF----PEAATPSVYLLYK------TSHYNILYAA  225 (228)
T ss_dssp             ----CCCC----CCCSSCSEEEEEE------TTEEEEEEEC
T ss_pred             CccccccC----CCCCCCEEEEEeC------CCCcccCccC
Confidence            33321 22    1234678999997      4699999984