Citrus Sinensis ID: 020742

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320--
Protein Sequence
MSGLPRSSSAPFKNGGLPPQELLDDLCSRFVLNVPQEDQQSFERILFLVEYAHWFYEDNSVENNPSLKSFTLKEFTSLMFNSCDVLRPYVAHIDDIFKDFTSYKVRVPVTGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPASDDVISHGVTGLKLYMVAPFLASLKKWISAHKPSIAPKHDMPLKGVCVWKAKNNSIGSNTIALESQLTKVASDSQPPDTGPGKSFRNFRFDTAAILQAMEAGFCN
Secondary Structure (PSIPRED)
cccccccccccccccccccHHHHHHHHHHHHcccccHHcccHHHHHHHHHHHEEEEEEcccccccccccccHHHHHHHHHHcccccccccccHHHHHHHHHHccccccEEEEEEEcccccEEEEEEEccccccccccccccccccHHHHHHHHHHHHccccccccccccEEEEEEEccEEEEEEEEEEEccccccccccccccccEEEEEcccccccccccccccccccccEEHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccHHHHHHHHHHEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHccHHHHHcccHHHHHHHHHHHHccccEEEEEEEcccccEEEEEEccccccccccccccccccccHHHHHHHHHHHHccccccccccccEEEEEEcccEEEEEEEccccccccccccHHHHHHHcEEEEHHHcccccccccccccccccEEEEcHcHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccEcccccHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
msglprsssapfkngglppqelLDDLCSrfvlnvpqedqQSFERILFLVEYAHWfyednsvennpslksftlkEFTSLMFNSCDVLRPYVAHIDDIFKDftsykvrvpvtgAIILDETYERCILvkgwkgsswsfprgkknkdeeDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQQRVRLYIIAGvrddtafapqtKKEISEIAWQRLdelqpasddvishgvtglKLYMVAPFLASLKKWISahkpsiapkhdmplkgvcvwkaknnsigsnTIALESQLtkvasdsqppdtgpgksfrnfrFDTAAILQAMEAGFCN
Flexible Loop (DISEMBL)
msglprsssapfkngglPPQELLDDLCSRFVLNVPQEDQQSFERILFLVEYAHWFYEDNSVENNPSLKSFTLKEFTSLMFNSCDVLRPYVAHIDDIFKDFTSYKVRVPVTGAIILDETYERCILVkgwkgsswsfprgkknkdeEDHACAIRevqeetgfdvskllnKDEFIEKIFGQQRVRLYIIAGVrddtafapqTKKEISEIAWQRLDELQPASDDVISHGVTGLKLYMVAPFLASLKKWISAHKPSIAPKHDMPLKGVCVWKAKNNSIGSNTIALESQLTKVASDSQPPDTGPGKSFRNFRFDTAAILQAMEAGFCN
Low Complexity Region (SEG)
MSGLPRSSSAPFKNGGLPPQELLDDLCSRFVLNVPQEDQQSFERILFLVEYAHWFYEDNSVENNPSLKSFTLKEFTSLMFNSCDVLRPYVAHIDDIFKDFTSYKVRVPVTGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPASDDVISHGVTGLKLYMVAPFLASLKKWISAHKPSIAPKHDMPLKGVCVWKAKNNSIGSNTIALESQLTKVASDSQPPDTGPGKSFRNFRFDTAAILQAMEAGFCN
Disordered region (IsUnstruct)
*********************LLDDLCSRFVLNVPQEDQQSFERILFLVEYAHWFYEDNSVENNPSLKSFTLKEFTSLMFNSCDVLRPYVAHIDDIFKDFTSYKVRVPVTGAIILDETYERCILVKGWKGSSWSF************ACAIREVQEETGFDVSKLLNKDEFIEKIFGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPASDDVISHGVTGLKLYMVAPFLASLKKWISAHKPSIAPKHDMPLKGVCVWKAKNNSIGSNTI**************************FRFDTAAILQA*******
Disordered Region (DISOPRED)
*********************LLDDLCSRFVLNVPQEDQQSFERILFLVEYAHWFYEDNSVENNPSLKSFTLKEFTSLMFNSCDVLRPYVAHIDDIFKDFTSYKVRVPVTGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPAS******GVTGLKLYMVAPFLASLKKWI***********************************************************FRFDTAAILQAMEAGF**
Disordered Region (DISEMBL)
**********PFKNGGLPPQELLDDLCSRFVLNVPQEDQQSFERILFLVEYAHWFYEDNSVENNPSLKSFTLKEFTSLMFNSCDVLRPYVAHIDDIFKDFTSYKVRVPVTGAIILDETYERCILVKGWKGSSWS***********DHACAIREVQEETGFDVSKLLNKDEFIEKIFGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPASDDVISHGVTGLKLYMVAPFLASLKKWISAHKPSIAPKHDMPLKGVCVWKAKNNSIGSNTIALESQL*************PGKSFRNFRFDTAAILQAMEAGFCN
Disordered Region (DISPRO)
***************GLPPQELLDDLCSRFVLNVPQEDQQSFERILFLVEYAHWFYEDNSVENNPSLKSFTLKEFTSLMFNSCDVLRPYVAHIDDIFKDFTSYKVRVPVTGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPASDDVISHGVTGLKLYMVAPFLASLKKWISAHK***************************************************SFRNFRFDTAAILQAMEAGFCN
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSGLPRSSSAPFKNGGLPPQELLDDLCSRFVLNVPQEDQQSFERILFLVEYAHWFYEDNSVENNPSLKSFTLKEFTSLMFNSCDVLRPYVAHIDDIFKDFTSYKVRVPVTGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPASDDVISHGVTGLKLYMVAPFLASLKKWISAHKPSIAPKHDMPLKGVCVWKAKNNSIGSNTIALESQLTKVASDSQPPDTGPGKSFRNFRFDTAAILQAMEAGFCN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	322	2.2.26 [Sep-21-2011]
Q8GW31	373	mRNA-decapping enzyme sub	yes	no	0.987	0.852	0.633	1e-128
O13828	741	mRNA decapping complex su	yes	no	0.692	0.300	0.5	6e-57
Q9CYC6	422	m7GpppN-mRNA hydrolase OS	yes	no	0.708	0.540	0.426	6e-51
Q5REQ8	385	m7GpppN-mRNA hydrolase OS	yes	no	0.708	0.592	0.418	2e-50
Q8IU60	420	m7GpppN-mRNA hydrolase OS	yes	no	0.708	0.542	0.413	4e-50
Q75BK1	880	mRNA-decapping enzyme sub	yes	no	0.686	0.251	0.381	1e-40
P53550	970	mRNA-decapping enzyme sub	yes	no	0.677	0.224	0.357	4e-39
A6ZRW5	970	mRNA-decapping enzyme sub	N/A	no	0.677	0.224	0.357	4e-39
O62255	786	mRNA-decapping enzyme 2 O	yes	no	0.708	0.290	0.352	7e-37
Q5UQW2	360	Putative mRNA-decapping p	N/A	no	0.267	0.238	0.378	1e-05

>sp|Q8GW31|DCP2_ARATH mRNA-decapping enzyme subunit 2 OS=Arabidopsis thaliana GN=DCP2 PE=1 SV=1

 Score =  459 bits (1181), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 235/371 (63%), Positives = 273/371 (73%), Gaps = 53/371 (14%)

Query: 1   MSGLPRSSSAPFKNGG--LPPQELLDDLCSRFVLNVPQEDQQSFERILFLVEYAHWFYED 58
           MSGL RSSS+  KN G  LP +ELLDDLCSRFVLNVP+EDQQSFERILFLVEYA+W+YED
Sbjct: 1   MSGLHRSSSS-SKNIGNCLPSKELLDDLCSRFVLNVPEEDQQSFERILFLVEYAYWYYED 59

Query: 59  NSVENNPSLKSFTLKEFTSLMFNSCDVLRPYVAHIDDIFKDFTSYKVRVPVTGAIILDET 118
           N+VEN+P LKS +LKEFTSL+FNSCDVLRPYV HIDDIFKDFTSYK RVPVTGAIILDET
Sbjct: 60  NAVENDPKLKSLSLKEFTSLLFNSCDVLRPYVTHIDDIFKDFTSYKCRVPVTGAIILDET 119

Query: 119 YERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQ 178
           YERC+LVKGWKGSSWSFPRGKK+KDEEDHACAIREV EETGFDVSKLL ++E+IE +F Q
Sbjct: 120 YERCLLVKGWKGSSWSFPRGKKSKDEEDHACAIREVLEETGFDVSKLLKREEYIEFVFRQ 179

Query: 179 QRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPASDDVISHGVTGLKLYMVAPFL 238
           QRVRLYI+AGV +DT FAP TKKEISEI W RLD LQPAS++VI+HGV+GLKLYMVAPFL
Sbjct: 180 QRVRLYIVAGVTEDTVFAPLTKKEISEITWHRLDHLQPASNEVITHGVSGLKLYMVAPFL 239

Query: 239 ASLKKWISAHKPSIAPKHDMPLKGVCVWKAKNNSIGSNTIALESQ-------LTKVASDS 291
           +SLK WI  H   +A + + PLK +CVW A+ +  G+ T  +ESQ        T + S+S
Sbjct: 240 SSLKSWILKHPSPVARRPNKPLKALCVWNARTSVGGNGTATVESQNRKSELRTTTMESNS 299

Query: 292 QPP-------------------------------------------DTGPGKSFRNFRFD 308
           + P                                           D  PG SF NF+F+
Sbjct: 300 RKPELKRTTMESHSTKPELRKGTMESHNTTATVESHNTKPVVDHSQDIKPGGSFINFKFN 359

Query: 309 TAAILQAMEAG 319
            + ILQA+E+G
Sbjct: 360 QSVILQALESG 370

Catalytic component of the decapping complex necessary for the degradation of mRNAs, both in normal mRNA turnover and in nonsense-mediated mRNA decay. Removes the 7-methyl guanine cap structure from mRNA molecules, yielding a 5'-phosphorylated mRNA fragment and 7m-GDP. Essential for postembryonic development, especially during the formation of the shoot apical meristem (SAM).
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 6EC: .EC: 1EC: .EC: 6EC: 2

>sp|O13828|DCP2_SCHPO mRNA decapping complex subunit 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=dcp2 PE=1 SV=1

 Score =  221 bits (563), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 113/226 (50%), Positives = 146/226 (64%), Gaps = 3/226 (1%)

Query: 21  ELLDDLCSRFVLNVPQEDQQSFERILFLVEYAHWFYEDNSVENNPSLKSFTLKEFTSLMF 80
           ++LDDL +RF+LN+P E+Q S ER+ F +E AHWFYED     N  L S  L+ F++ +F
Sbjct: 10  QVLDDLSARFILNLPAEEQSSVERLCFQIEQAHWFYEDFIRAQNDQLPSLGLRVFSAKLF 69

Query: 81  NSCDVLRPYVAHIDDIFKDFTSYKVRVPVTGAIILDETYERCILVKGWKGSS-WSFPRGK 139
             C +L  +    ++ F DF  YK R+PV GAI+LD + ++C+LVKGWK SS W FP+GK
Sbjct: 70  AHCPLLWKWSKVHEEAFDDFLRYKTRIPVRGAIMLDMSMQQCVLVKGWKASSGWGFPKGK 129

Query: 140 KNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQQRVRLYIIAGVRDDTAFAPQT 199
            +KDE D  CAIREV EETGFD S  +N +EFI+     Q VRLYII G+  DT F  +T
Sbjct: 130 IDKDESDVDCAIREVYEETGFDCSSRINPNEFIDMTIRGQNVRLYIIPGISLDTRFESRT 189

Query: 200 KKEISEIAWQRLDELQPASDDVISHGVTGLKLYMVAPFLASLKKWI 245
           +KEIS+I W  L +L P         +   K YMV PFLA LKKWI
Sbjct: 190 RKEISKIEWHNLMDL-PTFKKNKPQTMKN-KFYMVIPFLAPLKKWI 233

Catalytic component of the decapping complex necessary for the degradation of mRNAs, both in normal mRNA turnover and in nonsense-mediated mRNA decay. Removes the 7-methyl guanine cap structure from mRNA molecules, yielding a 5'-phosphorylated mRNA fragment and 7m-GDP. Decapping is the major pathway of mRNA degradation in yeast. It occurs through deadenylation, decapping and subsequent 5' to 3' exonucleolytic decay of the transcript body.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 3

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q9CYC6|DCP2_MOUSE m7GpppN-mRNA hydrolase OS=Mus musculus GN=Dcp2 PE=1 SV=2

 Score =  201 bits (511), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 99/232 (42%), Positives = 141/232 (60%), Gaps = 4/232 (1%)

Query: 19  PQELLDDLCSRFVLNVPQEDQQSFERILFLVEYAHWFYEDNSVENNPSLKSFTLKEFTSL 78
           P  +LDDLCSRF+L++P E++ +  R+ F +E AHWFY D  ++N P L    +++F   
Sbjct: 9   PGSVLDDLCSRFILHIPSEERDNAIRVCFQIELAHWFYLDFYMQNTPGLPQCGIRDFAKA 68

Query: 79  MFNSCDVLRPYVAHIDDIFKDFTSYKVRVPVTGAIILDETYERCILVKGWKG-SSWSFPR 137
           +F+ C  L P    ++ I  ++  YK+ VP  GAIILDET E  +LV+G+   S W FP+
Sbjct: 69  VFSHCPFLLPQGEDVEKILDEWKEYKMGVPTYGAIILDETLENVLLVQGYLAKSGWGFPK 128

Query: 138 GKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQQRVRLYIIAGVRDDTAFAP 197
           GK NK+E  H CA REV EETGFD+   + KD++IE     Q  RLYII GV  DT F P
Sbjct: 129 GKVNKEEAPHDCAAREVFEETGFDIKDYICKDDYIELRINDQLARLYIIPGVPKDTKFNP 188

Query: 198 QTKKEISEIAWQRLDELQPASDDVISHGVTGL---KLYMVAPFLASLKKWIS 246
           +T++EI  I W  +++L    +D+      GL   K +M  PF+  L+ W+S
Sbjct: 189 KTRREIRNIEWFSIEKLPCHRNDMTPKSKLGLAPNKFFMAIPFIRPLRDWLS 240

Necessary for the degradation of mRNAs, both in normal mRNA turnover and in nonsense-mediated mRNA decay. Plays a role in replication-dependent histone mRNA degradation. Removes the 7-methyl guanine cap structure from mRNA molecules, yielding a 5'-phosphorylated mRNA fragment and 7m-GDP. Has higher activity towards mRNAs that lack a poly(A) tail. Has no activity towards a cap structure lacking an RNA moiety.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 6

EC: 2

>sp|Q5REQ8|DCP2_PONAB m7GpppN-mRNA hydrolase OS=Pongo abelii GN=DCP2 PE=2 SV=1

 Score =  199 bits (507), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 97/232 (41%), Positives = 141/232 (60%), Gaps = 4/232 (1%)

Query: 19  PQELLDDLCSRFVLNVPQEDQQSFERILFLVEYAHWFYEDNSVENNPSLKSFTLKEFTSL 78
           P  +LDDLCSRF+L++P E++ +  R+ F +E AHWFY D  ++N P L    +++F   
Sbjct: 9   PGSVLDDLCSRFILHIPSEERDNAIRVCFQIELAHWFYLDFYMQNTPGLSQCGIRDFAKA 68

Query: 79  MFNSCDVLRPYVAHIDDIFKDFTSYKVRVPVTGAIILDETYERCILVKGWKG-SSWSFPR 137
           +F+ C  L P    ++ +  ++  YK+ VP  GAIILDET E  +LV+G+   S W FP+
Sbjct: 69  VFSHCPFLLPEGEDVEKVLDEWKEYKMGVPTYGAIILDETLENVLLVQGYLAKSGWGFPK 128

Query: 138 GKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQQRVRLYIIAGVRDDTAFAP 197
           GK NK+E  H CA REV EETGFD+   + KD++IE     Q  RLYII G+  DT F P
Sbjct: 129 GKVNKEEAPHDCAAREVFEETGFDIKDYICKDDYIELRINDQLARLYIIPGIPKDTKFNP 188

Query: 198 QTKKEISEIAWQRLDELQPASDDVISHGVTGL---KLYMVAPFLASLKKWIS 246
           +T++EI  I W  +++L    +D+      GL   K +M  PF+  L+ W+S
Sbjct: 189 KTRREIRNIEWFSIEKLPCHRNDMTPKSKLGLAPNKFFMAIPFIRPLRDWLS 240

Necessary for the degradation of mRNAs, both in normal mRNA turnover and in nonsense-mediated mRNA decay. Plays a role in replication-dependent histone mRNA degradation. Removes the 7-methyl guanine cap structure from mRNA molecules, yielding a 5'-phosphorylated mRNA fragment and 7m-GDP. Has higher activity towards mRNAs that lack a poly(A) tail. Has no activity towards a cap structure lacking an RNA moiety.

Pongo abelii (taxid: 9601)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 6

EC: 2

>sp|Q8IU60|DCP2_HUMAN m7GpppN-mRNA hydrolase OS=Homo sapiens GN=DCP2 PE=1 SV=2

 Score =  198 bits (504), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 96/232 (41%), Positives = 140/232 (60%), Gaps = 4/232 (1%)

Query: 19  PQELLDDLCSRFVLNVPQEDQQSFERILFLVEYAHWFYEDNSVENNPSLKSFTLKEFTSL 78
           P  +LDD CSRF+L++P E++ +  R+ F +E AHWFY D  ++N P L    +++F   
Sbjct: 9   PGSVLDDFCSRFILHIPSEERDNAIRVCFQIELAHWFYLDFYMQNTPGLPQCGIRDFAKA 68

Query: 79  MFNSCDVLRPYVAHIDDIFKDFTSYKVRVPVTGAIILDETYERCILVKGWKG-SSWSFPR 137
           +F+ C  L P    ++ +  ++  YK+ VP  GAIILDET E  +LV+G+   S W FP+
Sbjct: 69  VFSHCPFLLPQGEDVEKVLDEWKEYKMGVPTYGAIILDETLENVLLVQGYLAKSGWGFPK 128

Query: 138 GKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQQRVRLYIIAGVRDDTAFAP 197
           GK NK+E  H CA REV EETGFD+   + KD++IE     Q  RLYII G+  DT F P
Sbjct: 129 GKVNKEEAPHDCAAREVFEETGFDIKDYICKDDYIELRINDQLARLYIIPGIPKDTKFNP 188

Query: 198 QTKKEISEIAWQRLDELQPASDDVISHGVTGL---KLYMVAPFLASLKKWIS 246
           +T++EI  I W  +++L    +D+      GL   K +M  PF+  L+ W+S
Sbjct: 189 KTRREIRNIEWFSIEKLPCHRNDMTPKSKLGLAPNKFFMAIPFIRPLRDWLS 240

Necessary for the degradation of mRNAs, both in normal mRNA turnover and in nonsense-mediated mRNA decay. Plays a role in replication-dependent histone mRNA degradation. Removes the 7-methyl guanine cap structure from mRNA molecules, yielding a 5'-phosphorylated mRNA fragment and 7m-GDP. Has higher activity towards mRNAs that lack a poly(A) tail. Has no activity towards a cap structure lacking a RNA moiety.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 6

EC: 2

>sp|Q75BK1|DCP2_ASHGO mRNA-decapping enzyme subunit 2 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=DCP2 PE=3 SV=1

 Score =  166 bits (421), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 87/228 (38%), Positives = 130/228 (57%), Gaps = 7/228 (3%)

Query: 23  LDDLCSRFVLNVPQEDQQSFERILFLVEYAHWFYEDNSVENNPSLKSFTLKEFTSLMFNS 82
           L+DL  RF++NVP ED  + ER LF  E A WFY D     NP L +   K F S + + 
Sbjct: 18  LEDLIVRFIINVPPEDLATVERELFHFEEAQWFYTDFVKLTNPHLPNMKFKTFASYVISL 77

Query: 83  CDVLRPYV-AHIDDIFKDFTSYKVRVPVTGAIILDETYERCILVKGWKGSSWSFPRGKKN 141
           C ++  +   + ++  + F+ YK  +PV GA I +ET  + +LVKG +  SWSFPRGK +
Sbjct: 78  CPLVWKWQDVNPEEALQKFSKYKKSIPVRGAAIFNETLNKILLVKGTESDSWSFPRGKIS 137

Query: 142 KDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQQRVRLYIIAGVRDDTAFAPQTKK 201
           KDE+D  C IREV EE GFD++  + +D++IE+  G +  ++Y++ GV  D AF PQ + 
Sbjct: 138 KDEDDVDCCIREVMEEIGFDLTNYVLEDQYIERNIGGKNYKIYLVKGVPQDFAFKPQVRN 197

Query: 202 EISEIAWQRLDELQPASDDVISHGVTGLKLYMVAPFLASLKKWISAHK 249
           EI +I W+   +L        S   +  K Y+V+  +  L  W+   K
Sbjct: 198 EIEKIEWRDFWKLS------RSIHKSNNKFYLVSSMVKPLSLWVKKQK 239

Catalytic component of the decapping complex necessary for the degradation of mRNAs, both in normal mRNA turnover and in nonsense-mediated mRNA decay. Removes the 7-methyl guanine cap structure from mRNA molecules, yielding a 5'-phosphorylated mRNA fragment and 7m-GDP. Decapping is the major pathway of mRNA degradation in yeast. It occurs through deadenylation, decapping and subsequent 5' to 3' exonucleolytic decay of the transcript body.

Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) (taxid: 284811)

EC: 3

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|P53550|DCP2_YEAST mRNA-decapping enzyme subunit 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DCP2 PE=1 SV=1

 Score =  162 bits (409), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 80/224 (35%), Positives = 127/224 (56%), Gaps = 6/224 (2%)

Query: 22  LLDDLCSRFVLNVPQEDQQSFERILFLVEYAHWFYEDNSVENNPSLKSFTLKEFTSLMFN 81
           +L+DL  RF++N P ED  S ER LF  E A WFY D     NP+L S  +K F  L+  
Sbjct: 18  ILEDLLVRFIINCPNEDLSSVERELFHFEEASWFYTDFIKLMNPTLPSLKIKSFAQLIIK 77

Query: 82  SCDVLRPYVAHIDDIFKDFTSYKVRVPVTGAIILDETYERCILVKGWKGSSWSFPRGKKN 141
            C ++  +   +D+  + F+ YK  +PV GA I +E   + +LV+G +  SWSFPRGK +
Sbjct: 78  LCPLVWKWDIRVDEALQQFSKYKKSIPVRGAAIFNENLSKILLVQGTESDSWSFPRGKIS 137

Query: 142 KDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQQRVRLYIIAGVRDDTAFAPQTKK 201
           KDE D  C IREV+EE GFD++  ++ ++FIE+    +  ++++I+GV +   F PQ + 
Sbjct: 138 KDENDIDCCIREVKEEIGFDLTDYIDDNQFIERNIQGKNYKIFLISGVSEVFNFKPQVRN 197

Query: 202 EISEIAWQRLDELQPASDDVISHGVTGLKLYMVAPFLASLKKWI 245
           EI +I W    ++        +   + +K Y++   +  L  W+
Sbjct: 198 EIDKIEWFDFKKISK------TMYKSNIKYYLINSMMRPLSMWL 235

Catalytic component of the decapping complex necessary for the degradation of mRNAs, both in normal mRNA turnover and in nonsense-mediated mRNA decay. Removes the 7-methyl guanine cap structure from mRNA molecules, yielding a 5'-phosphorylated mRNA fragment and 7m-GDP. Decapping is the major pathway of mRNA degradation in yeast. It occurs through deadenylation, decapping and subsequent 5' to 3' exonucleolytic decay of the transcript body.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 3

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|A6ZRW5|DCP2_YEAS7 mRNA-decapping enzyme subunit 2 OS=Saccharomyces cerevisiae (strain YJM789) GN=DCP2 PE=3 SV=1

 Score =  162 bits (409), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 80/224 (35%), Positives = 127/224 (56%), Gaps = 6/224 (2%)

Query: 22  LLDDLCSRFVLNVPQEDQQSFERILFLVEYAHWFYEDNSVENNPSLKSFTLKEFTSLMFN 81
           +L+DL  RF++N P ED  S ER LF  E A WFY D     NP+L S  +K F  L+  
Sbjct: 18  ILEDLLVRFIINCPNEDLSSVERELFHFEEASWFYTDFIKLMNPTLPSLKIKSFAQLIIK 77

Query: 82  SCDVLRPYVAHIDDIFKDFTSYKVRVPVTGAIILDETYERCILVKGWKGSSWSFPRGKKN 141
            C ++  +   +D+  + F+ YK  +PV GA I +E   + +LV+G +  SWSFPRGK +
Sbjct: 78  LCPLVWKWDIRVDEALQQFSKYKKSIPVRGAAIFNENLSKILLVQGTESDSWSFPRGKIS 137

Query: 142 KDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQQRVRLYIIAGVRDDTAFAPQTKK 201
           KDE D  C IREV+EE GFD++  ++ ++FIE+    +  ++++I+GV +   F PQ + 
Sbjct: 138 KDENDIDCCIREVKEEIGFDLTDYIDDNQFIERNIQGKNYKIFLISGVSEVFNFKPQVRN 197

Query: 202 EISEIAWQRLDELQPASDDVISHGVTGLKLYMVAPFLASLKKWI 245
           EI +I W    ++        +   + +K Y++   +  L  W+
Sbjct: 198 EIDKIEWFDFKKISK------TMYKSNIKYYLINSMMRPLSMWL 235

Catalytic component of the decapping complex necessary for the degradation of mRNAs, both in normal mRNA turnover and in nonsense-mediated mRNA decay. Removes the 7-methyl guanine cap structure from mRNA molecules, yielding a 5'-phosphorylated mRNA fragment and 7m-GDP. Decapping is the major pathway of mRNA degradation in yeast. It occurs through deadenylation, decapping and subsequent 5' to 3' exonucleolytic decay of the transcript body.

Saccharomyces cerevisiae (strain YJM789) (taxid: 307796)

EC: 3

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|O62255|DCP2_CAEEL mRNA-decapping enzyme 2 OS=Caenorhabditis elegans GN=dcap-2 PE=2 SV=4

 Score =  154 bits (390), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 84/238 (35%), Positives = 130/238 (54%), Gaps = 10/238 (4%)

Query: 19  PQELLDDLCSRFVLNVPQEDQQSFERILFLVEYAHWFYEDNSVENN-----PSLKSFTLK 73
           P ++LD+L  RF+ N+ + +     R+ F +E AHW+Y D+ VE++     P++ S   +
Sbjct: 150 PTDILDELEFRFISNMVECEINDNIRVCFHLELAHWYYIDHMVEDDKISGCPNVGS---R 206

Query: 74  EFTSLMFNSCDVLRPYVAHIDDIFKDFTSYKVRVPVTGAIILDETYERCILVKGW--KGS 131
           +F   M   C VLR Y    D++   F  YK  VP  GAI++D   +  +LV+ +  KG 
Sbjct: 207 DFNFQMCQHCRVLRKYAHRADEVLAKFREYKSTVPTYGAILVDPEMDHVVLVQSYFAKGK 266

Query: 132 SWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQQRVRLYIIAGVRD 191
           +W FP+GK N+ E     AIRE  EETGFD      K++  ++      VRLY++  V  
Sbjct: 267 NWGFPKGKINQAEPPRDAAIRETFEETGFDFGIYSEKEKKFQRFINDGMVRLYLVKNVPK 326

Query: 192 DTAFAPQTKKEISEIAWQRLDELQPASDDVISHGVTGLKLYMVAPFLASLKKWISAHK 249
           D  F PQT+KEI +I W ++D+L     D +   + G K YMV PF+  ++ ++   K
Sbjct: 327 DFNFQPQTRKEIRKIEWFKIDDLPTDKTDELPAYLQGNKFYMVMPFVKDIQIYVQKEK 384

RNA-decapping enzyme, activity is affected by RNA sequence. Does not bind cap. May contribute to gene regulation in multiple RNA pathways including monomethylguanosine- and trimethylgaunosine-capped RNAs.

Caenorhabditis elegans (taxid: 6239)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|Q5UQW2|DIPP_MIMIV Putative mRNA-decapping protein OS=Acanthamoeba polyphaga mimivirus GN=MIMI_L375 PE=3 SV=1

 Score = 50.8 bits (120), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/95 (37%), Positives = 49/95 (51%), Gaps = 9/95 (9%)

Query: 128 WKGSSWSFPRGKKNK-DEEDHACAIREVQEETGFDVS--KLLNKDEFI-EKIFGQQRV-- 181
           WK   W FP+G+++K  EE+  CA RE +EETG+  S   +LNK E I EK+ G   V  
Sbjct: 232 WKSPEWGFPKGRRDKRSEENMVCACREFEEETGYKKSDYSVLNKIEPIEEKLTGTNGVNY 291

Query: 182 -RLYIIA--GVRDDTAFAPQTKKEISEIAWQRLDE 213
             +Y +A      ++        EI EI W   DE
Sbjct: 292 KHIYYLAINNCDINSDLTDYDTYEIGEIKWFTYDE 326

Might function as a decapping enzyme required for the removal of the 5'-end m7GpppN cap tethered to viral and host mRNAs to allow their decay in cells. In addition to the mRNA cap, probably also efficiently hydrolyzes diphosphoinositol polyphosphates.

Acanthamoeba polyphaga (taxid: 5757)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 5

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	322
224097907	322	predicted protein [Populus trichocarpa]	0.993	0.993	0.85	1e-163
224113033	322	predicted protein [Populus trichocarpa]	0.993	0.993	0.843	1e-159
118482684	322	unknown [Populus trichocarpa]	0.993	0.993	0.840	1e-158
225449050	321	PREDICTED: mRNA decapping complex subuni	0.990	0.993	0.828	1e-156
359806604	318	uncharacterized protein LOC100807659 [Gl	0.987	1.0	0.819	1e-154
359806602	318	uncharacterized protein LOC100784829 [Gl	0.987	1.0	0.804	1e-150
449449314	314	PREDICTED: mRNA-decapping enzyme subunit	0.972	0.996	0.750	1e-140
449464384	319	PREDICTED: mRNA-decapping enzyme subunit	0.981	0.990	0.763	1e-139
255584019	316	conserved hypothetical protein [Ricinus	0.959	0.977	0.72	1e-132
30684475	373	mRNA-decapping enzyme subunit 2 [Arabido	0.987	0.852	0.633	1e-127

>gi|224097907|ref|XP_002311091.1| predicted protein [Populus trichocarpa] gi|222850911|gb|EEE88458.1| predicted protein [Populus trichocarpa]

 Score =  580 bits (1495), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 272/320 (85%), Positives = 299/320 (93%)

Query: 1   MSGLPRSSSAPFKNGGLPPQELLDDLCSRFVLNVPQEDQQSFERILFLVEYAHWFYEDNS 60
           MSGL RSSSA FKNGGLPPQELLDDLCSRFVLNVP+EDQQSFERILFLVEYAHWFYEDNS
Sbjct: 1   MSGLNRSSSAAFKNGGLPPQELLDDLCSRFVLNVPKEDQQSFERILFLVEYAHWFYEDNS 60

Query: 61  VENNPSLKSFTLKEFTSLMFNSCDVLRPYVAHIDDIFKDFTSYKVRVPVTGAIILDETYE 120
           VE NPSLKSFTLKEFTSLMFNSCDVLRPYVAHIDDIFKDFTSYKV+VPVTGAIILDET+E
Sbjct: 61  VEKNPSLKSFTLKEFTSLMFNSCDVLRPYVAHIDDIFKDFTSYKVKVPVTGAIILDETFE 120

Query: 121 RCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQQR 180
           RC+LVKGWKG+SWSFPRGKKNKDEEDHACA+REV EETGFDVS LLNKD++IE++FGQQR
Sbjct: 121 RCLLVKGWKGTSWSFPRGKKNKDEEDHACAVREVLEETGFDVSNLLNKDDYIEEMFGQQR 180

Query: 181 VRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPASDDVISHGVTGLKLYMVAPFLAS 240
           VRLYIIAGV+DDTAFAP TKKEISEIAWQRLD+LQPAS +VIS  +TGLKLYMVAPFLAS
Sbjct: 181 VRLYIIAGVKDDTAFAPLTKKEISEIAWQRLDDLQPASYEVISRSITGLKLYMVAPFLAS 240

Query: 241 LKKWISAHKPSIAPKHDMPLKGVCVWKAKNNSIGSNTIALESQLTKVASDSQPPDTGPGK 300
           LK WIS+H+  +AP+ DMPLK +CVWKA+NNSIGS+T+ +ES L K  SD+ PPD GPGK
Sbjct: 241 LKSWISSHQLPVAPRLDMPLKAMCVWKARNNSIGSSTVIMESHLNKPGSDAHPPDMGPGK 300

Query: 301 SFRNFRFDTAAILQAMEAGF 320
           SFRNFRFDTA+IL+AME+GF
Sbjct: 301 SFRNFRFDTASILRAMESGF 320

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224113033|ref|XP_002316368.1| predicted protein [Populus trichocarpa] gi|222865408|gb|EEF02539.1| predicted protein [Populus trichocarpa]

 Score =  566 bits (1458), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 270/320 (84%), Positives = 289/320 (90%)

Query: 1   MSGLPRSSSAPFKNGGLPPQELLDDLCSRFVLNVPQEDQQSFERILFLVEYAHWFYEDNS 60
           MSGL R SS PFKNGGLPPQELLDDLCSR VLNVP+EDQQSFERILFLVE AHWFYEDNS
Sbjct: 1   MSGLNRFSSVPFKNGGLPPQELLDDLCSRLVLNVPKEDQQSFERILFLVENAHWFYEDNS 60

Query: 61  VENNPSLKSFTLKEFTSLMFNSCDVLRPYVAHIDDIFKDFTSYKVRVPVTGAIILDETYE 120
           VE NPSLKSFTLKEFTSLMFNSCDVLRPYVAHIDDIFKDFTSYKV+VPVTGAIILDET+E
Sbjct: 61  VEKNPSLKSFTLKEFTSLMFNSCDVLRPYVAHIDDIFKDFTSYKVKVPVTGAIILDETFE 120

Query: 121 RCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQQR 180
           RC+LVKGWKG+SWSFPRGKKNKDEEDHACAIREV EETGFDVS LLNKD++IE++FGQQR
Sbjct: 121 RCLLVKGWKGTSWSFPRGKKNKDEEDHACAIREVLEETGFDVSNLLNKDDYIEEMFGQQR 180

Query: 181 VRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPASDDVISHGVTGLKLYMVAPFLAS 240
           VRLYIIAGV+ DTAFAP TKKEISEIAWQRLDELQ ASD+VIS  +TGLKLYMVAPFLAS
Sbjct: 181 VRLYIIAGVKYDTAFAPLTKKEISEIAWQRLDELQSASDEVISRSITGLKLYMVAPFLAS 240

Query: 241 LKKWISAHKPSIAPKHDMPLKGVCVWKAKNNSIGSNTIALESQLTKVASDSQPPDTGPGK 300
           LK WI +H+P  AP+ DMPLK  CVWKAKN S+GS T+  ES LTK   D+ P D GPGK
Sbjct: 241 LKSWILSHQPPAAPRPDMPLKATCVWKAKNTSLGSGTVITESHLTKPVFDAHPLDMGPGK 300

Query: 301 SFRNFRFDTAAILQAMEAGF 320
           SFRNFRFDTAAILQAME+GF
Sbjct: 301 SFRNFRFDTAAILQAMESGF 320

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118482684|gb|ABK93261.1| unknown [Populus trichocarpa]

 Score =  564 bits (1453), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 269/320 (84%), Positives = 288/320 (90%)

Query: 1   MSGLPRSSSAPFKNGGLPPQELLDDLCSRFVLNVPQEDQQSFERILFLVEYAHWFYEDNS 60
           MSGL R SS PFKNGGLPPQELLDDLCSR VLNVP+EDQQSFERILFLVE AHWFYEDNS
Sbjct: 1   MSGLNRFSSVPFKNGGLPPQELLDDLCSRLVLNVPKEDQQSFERILFLVENAHWFYEDNS 60

Query: 61  VENNPSLKSFTLKEFTSLMFNSCDVLRPYVAHIDDIFKDFTSYKVRVPVTGAIILDETYE 120
           VE NPSLKSFTLKEFTSLMFNSCDVLRPYVAHIDDIFKDFTSYKV+VPVTGAIILDET+E
Sbjct: 61  VEKNPSLKSFTLKEFTSLMFNSCDVLRPYVAHIDDIFKDFTSYKVKVPVTGAIILDETFE 120

Query: 121 RCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQQR 180
           RC+LVKGWKG+SWSFPRGKKNKDEEDHACAIREV EETGFDVS LLNKD++IE++FGQQR
Sbjct: 121 RCLLVKGWKGTSWSFPRGKKNKDEEDHACAIREVLEETGFDVSNLLNKDDYIEEMFGQQR 180

Query: 181 VRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPASDDVISHGVTGLKLYMVAPFLAS 240
           VRLYIIAGV+ DTAFAP TKKEISEIAWQRLDELQ ASD+VIS  +TGLKLYMVAPFL S
Sbjct: 181 VRLYIIAGVKYDTAFAPLTKKEISEIAWQRLDELQSASDEVISRSITGLKLYMVAPFLVS 240

Query: 241 LKKWISAHKPSIAPKHDMPLKGVCVWKAKNNSIGSNTIALESQLTKVASDSQPPDTGPGK 300
           LK WI +H+P  AP+ DMPLK  CVWKAKN S+GS T+  ES LTK   D+ P D GPGK
Sbjct: 241 LKSWILSHQPPAAPRPDMPLKATCVWKAKNTSLGSGTVITESHLTKPVFDAHPLDMGPGK 300

Query: 301 SFRNFRFDTAAILQAMEAGF 320
           SFRNFRFDTAAILQAME+GF
Sbjct: 301 SFRNFRFDTAAILQAMESGF 320

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225449050|ref|XP_002274358.1| PREDICTED: mRNA decapping complex subunit 2 [Vitis vinifera] gi|296086018|emb|CBI31459.3| unnamed protein product [Vitis vinifera]

 Score =  557 bits (1436), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 265/320 (82%), Positives = 289/320 (90%), Gaps = 1/320 (0%)

Query: 1   MSGLPRSSSAPFKNGGLPPQELLDDLCSRFVLNVPQEDQQSFERILFLVEYAHWFYEDNS 60
           MS + RSSSA  KNG  PPQELLDDLCSRFVLNVP+EDQQSFERILFLVEYAHWFYEDNS
Sbjct: 1   MSSIHRSSSATLKNGN-PPQELLDDLCSRFVLNVPKEDQQSFERILFLVEYAHWFYEDNS 59

Query: 61  VENNPSLKSFTLKEFTSLMFNSCDVLRPYVAHIDDIFKDFTSYKVRVPVTGAIILDETYE 120
           VE NPSLKSF LKEFTSL+FNSCDVLRPYVAHIDDIFKDFTSYKVRVPVTGAIILDET+E
Sbjct: 60  VEKNPSLKSFNLKEFTSLLFNSCDVLRPYVAHIDDIFKDFTSYKVRVPVTGAIILDETFE 119

Query: 121 RCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQQR 180
           RC+LVKGWKG+SWSFPRGKKNKDEEDH CAIREVQEETGFDVSKLLN+DE+IE+IFGQQR
Sbjct: 120 RCLLVKGWKGTSWSFPRGKKNKDEEDHTCAIREVQEETGFDVSKLLNQDEYIEEIFGQQR 179

Query: 181 VRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPASDDVISHGVTGLKLYMVAPFLAS 240
           VRLYIIAGV+DDTAFAP TKKEISEI+W RLD+LQP S DVIS G++G+KLYMVAPFL S
Sbjct: 180 VRLYIIAGVKDDTAFAPLTKKEISEISWHRLDDLQPVSGDVISRGLSGVKLYMVAPFLLS 239

Query: 241 LKKWISAHKPSIAPKHDMPLKGVCVWKAKNNSIGSNTIALESQLTKVASDSQPPDTGPGK 300
           LK WISAH+P IAPK D P KG CVWKAKN+S GS+T+  E+Q TK  SD  PPDTGPG+
Sbjct: 240 LKSWISAHQPPIAPKFDAPAKGFCVWKAKNSSTGSSTMIAENQATKPVSDVHPPDTGPGR 299

Query: 301 SFRNFRFDTAAILQAMEAGF 320
           SFRNFRFDT AIL+AM++ F
Sbjct: 300 SFRNFRFDTTAILKAMDSAF 319

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806604|ref|NP_001241527.1| uncharacterized protein LOC100807659 [Glycine max] gi|255640283|gb|ACU20431.1| unknown [Glycine max]

 Score =  549 bits (1415), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 264/322 (81%), Positives = 286/322 (88%), Gaps = 4/322 (1%)

Query: 1   MSGLPRSSSAPFKNGGLPPQELLDDLCSRFVLNVPQEDQQSFERILFLVEYAHWFYEDNS 60
           MS   RSSS      GLPPQELLDDLCSRFVLNVP+ED QSFERILFLVEYAHWFYEDNS
Sbjct: 1   MSNHHRSSS----KNGLPPQELLDDLCSRFVLNVPKEDLQSFERILFLVEYAHWFYEDNS 56

Query: 61  VENNPSLKSFTLKEFTSLMFNSCDVLRPYVAHIDDIFKDFTSYKVRVPVTGAIILDETYE 120
           VENNPSLKS  LKEFTSL+FNSCDVL+PYVAHIDDIFKDFTSYKVRVPVTGAIILDETYE
Sbjct: 57  VENNPSLKSLNLKEFTSLLFNSCDVLKPYVAHIDDIFKDFTSYKVRVPVTGAIILDETYE 116

Query: 121 RCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQQR 180
           RC+LVKGWKGSSWSFPRGKK+KDEEDHACAIREV EETGFDVSKLLNKDE++E IFGQQR
Sbjct: 117 RCLLVKGWKGSSWSFPRGKKSKDEEDHACAIREVMEETGFDVSKLLNKDEYLEVIFGQQR 176

Query: 181 VRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPASDDVISHGVTGLKLYMVAPFLAS 240
           VRLYIIAGV+DDTAFAP TKKEISEIAW RLDELQPASD+VIS  +TGLKLYMVAPFLAS
Sbjct: 177 VRLYIIAGVKDDTAFAPLTKKEISEIAWHRLDELQPASDEVISRSITGLKLYMVAPFLAS 236

Query: 241 LKKWISAHKPSIAPKHDMPLKGVCVWKAKNNSIGSNTIALESQLTKVASDSQPPDTGPGK 300
           LK WIS H+P++AP+ D+PLKG+CVWKAK  SIGS++  ++ Q TK   DS  PD GPGK
Sbjct: 237 LKSWISTHQPAMAPRPDLPLKGICVWKAKPGSIGSSSTVMDIQPTKPEPDSHTPDLGPGK 296

Query: 301 SFRNFRFDTAAILQAMEAGFCN 322
           SFRNFRFDTA+ILQAME  F +
Sbjct: 297 SFRNFRFDTASILQAMETSFSS 318

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806602|ref|NP_001241271.1| uncharacterized protein LOC100784829 [Glycine max] gi|255641443|gb|ACU20997.1| unknown [Glycine max]

 Score =  536 bits (1380), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 259/322 (80%), Positives = 282/322 (87%), Gaps = 4/322 (1%)

Query: 1   MSGLPRSSSAPFKNGGLPPQELLDDLCSRFVLNVPQEDQQSFERILFLVEYAHWFYEDNS 60
           MS   RSSS      GLPPQELLDDLCSRFVLNVP+ED QSFERILFLVE AHWFYEDNS
Sbjct: 1   MSNHHRSSS----KNGLPPQELLDDLCSRFVLNVPKEDLQSFERILFLVENAHWFYEDNS 56

Query: 61  VENNPSLKSFTLKEFTSLMFNSCDVLRPYVAHIDDIFKDFTSYKVRVPVTGAIILDETYE 120
           VENNPSLKS  LKEFTSL+FNSCDV +PYVAHIDDIFKDFTSYKVRVPVTGAIILDETYE
Sbjct: 57  VENNPSLKSLNLKEFTSLLFNSCDVFQPYVAHIDDIFKDFTSYKVRVPVTGAIILDETYE 116

Query: 121 RCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQQR 180
           RC+LVKGWKG+SWSFPRGKK+KDEEDHAC+IREV EETGFDVSKLLNKDE++E IFGQQR
Sbjct: 117 RCLLVKGWKGTSWSFPRGKKSKDEEDHACSIREVMEETGFDVSKLLNKDEYLEVIFGQQR 176

Query: 181 VRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPASDDVISHGVTGLKLYMVAPFLAS 240
           VRLYIIAGV+DDTAFAP TKKEISEIAW RLD+LQPASD+VIS  +TGLKLYMVAPFLAS
Sbjct: 177 VRLYIIAGVKDDTAFAPLTKKEISEIAWHRLDDLQPASDEVISRSITGLKLYMVAPFLAS 236

Query: 241 LKKWISAHKPSIAPKHDMPLKGVCVWKAKNNSIGSNTIALESQLTKVASDSQPPDTGPGK 300
           LK WIS H P++AP+ D+PLKG+CVWKAK  SIGS++  ++ Q TK   DS   D GPGK
Sbjct: 237 LKSWISIHHPAMAPRPDLPLKGICVWKAKPGSIGSSSTVMDIQPTKPEPDSHTLDMGPGK 296

Query: 301 SFRNFRFDTAAILQAMEAGFCN 322
           SFRNFRFDTA ILQAMEA F +
Sbjct: 297 SFRNFRFDTALILQAMEASFSS 318

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449449314|ref|XP_004142410.1| PREDICTED: mRNA-decapping enzyme subunit 2-like [Cucumis sativus] gi|449487206|ref|XP_004157527.1| PREDICTED: mRNA-decapping enzyme subunit 2-like [Cucumis sativus]

 Score =  503 bits (1295), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 241/321 (75%), Positives = 274/321 (85%), Gaps = 8/321 (2%)

Query: 1   MSGLPRSSSAPFKNGGLPPQELLDDLCSRFVLNVPQEDQQSFERILFLVEYAHWFYEDNS 60
           M+GL   S+A  KNG LPPQELLDDLCSRFVLNVP+ED QSFERILFLVEYAHWFYEDNS
Sbjct: 1   MAGLHLPSNAHVKNG-LPPQELLDDLCSRFVLNVPKEDLQSFERILFLVEYAHWFYEDNS 59

Query: 61  VENNPSLKSFTLKEFTSLMFNSCDVLRPYVAHIDDIFKDFTSYKVRVPVTGAIILDETYE 120
           VENNPSLKSF LKEFTSL+FNSCDVL+PYV HIDDIFKDFTSYK+RVPVTG IILDET+E
Sbjct: 60  VENNPSLKSFNLKEFTSLLFNSCDVLKPYVPHIDDIFKDFTSYKLRVPVTGGIILDETFE 119

Query: 121 RCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQQR 180
           RC+LVKGWKGSSWSFPRGKK+KDEEDHACAIREV EETGFDV+  L K++FIE +FGQQR
Sbjct: 120 RCLLVKGWKGSSWSFPRGKKSKDEEDHACAIREVLEETGFDVTPFLIKEDFIEVMFGQQR 179

Query: 181 VRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPASDDVISHGVTGLKLYMVAPFLAS 240
           VRLYIIAGV++DTAFAP TKKEISEIAW RLD+L P SDDVISHG+TGLKLYMVAPFL S
Sbjct: 180 VRLYIIAGVKNDTAFAPLTKKEISEIAWHRLDDLLPVSDDVISHGITGLKLYMVAPFLES 239

Query: 241 LKKWISAHKPSIAPKHDMPLKGVCVWKAKNNSIGSNTIALESQLTKVASDSQPPDTGPGK 300
           L+ WI  H+P +AP  DMP+KG  +WK KN S+ +++I  ++Q  K+ SD       PG+
Sbjct: 240 LRSWILKHQPPVAPNFDMPVKGFTMWKVKNTSMSNSSIIFDNQPIKLDSD-------PGR 292

Query: 301 SFRNFRFDTAAILQAMEAGFC 321
           S RNF+FDTA+IL AME+ F 
Sbjct: 293 SLRNFKFDTASILHAMESAFA 313

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449464384|ref|XP_004149909.1| PREDICTED: mRNA-decapping enzyme subunit 2-like [Cucumis sativus] gi|449490388|ref|XP_004158591.1| PREDICTED: mRNA-decapping enzyme subunit 2-like [Cucumis sativus]

 Score =  500 bits (1287), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 246/322 (76%), Positives = 277/322 (86%), Gaps = 6/322 (1%)

Query: 1   MSGLPRSSSA-PFKNGGLPPQELLDDLCSRFVLNVPQEDQQSFERILFLVEYAHWFYEDN 59
           M+ L  SSS  P KNG LPPQEL+DDLCSRFVLNVP+ED QSFERILFL+EYAHWFYEDN
Sbjct: 1   MAALHHSSSTTPVKNG-LPPQELIDDLCSRFVLNVPKEDLQSFERILFLIEYAHWFYEDN 59

Query: 60  SVENNPSLKSFTLKEFTSLMFNSCDVLRPYVAHIDDIFKDFTSYKVRVPVTGAIILDETY 119
           SVE NPSLKS  LKEFTSLMF SCDVLRPYVAHIDDIFKDFTSYKVRVPVTGAIILDET+
Sbjct: 60  SVERNPSLKSLNLKEFTSLMFKSCDVLRPYVAHIDDIFKDFTSYKVRVPVTGAIILDETF 119

Query: 120 ERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQQ 179
           ERC+LVKGWKGSSWSFPRGKK+KDEEDHACAIREV EETGFD+S LL K E+IE IFG Q
Sbjct: 120 ERCLLVKGWKGSSWSFPRGKKSKDEEDHACAIREVLEETGFDISNLLKKSEYIEVIFGPQ 179

Query: 180 RVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPASDDVISHGVTGLKLYMVAPFLA 239
           RVRLYIIAGV+DD  FAPQTKKEISEIAW RLD+L+PASD+VIS G++GLKLYM+APFLA
Sbjct: 180 RVRLYIIAGVKDDNLFAPQTKKEISEIAWHRLDDLEPASDNVISRGMSGLKLYMIAPFLA 239

Query: 240 SLKKWISAHKPSIAPKHDMPLKGVCVWKAKN-NSIGSNTIALESQLTKVASDSQPPDTGP 298
           SL+ WI  H P + P  D+P++G+ VWKAKN +   S+TI +ESQ++K   +    DTGP
Sbjct: 240 SLRSWILTHHPPVRPNPDIPIRGLTVWKAKNSSIGSSSTIIMESQISKAEVEV---DTGP 296

Query: 299 GKSFRNFRFDTAAILQAMEAGF 320
           GKSFRNF+FDTA+ILQ+ME  F
Sbjct: 297 GKSFRNFKFDTASILQSMERAF 318

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255584019|ref|XP_002532755.1| conserved hypothetical protein [Ricinus communis] gi|223527506|gb|EEF29632.1| conserved hypothetical protein [Ricinus communis]

 Score =  476 bits (1225), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 234/325 (72%), Positives = 261/325 (80%), Gaps = 16/325 (4%)

Query: 1   MSGLPRSSSAPFKNGGLPPQELLDDLCSRFVLNVPQEDQQSFERILFLVEYAHWFYEDNS 60
           MSG+ RSSSAP KNGGLPPQELLDDLCSRFVLNVP+EDQQSFERILFLVEYAHWFYEDNS
Sbjct: 1   MSGIHRSSSAPLKNGGLPPQELLDDLCSRFVLNVPKEDQQSFERILFLVEYAHWFYEDNS 60

Query: 61  VENNPSLKSFTLKEFTSLMFN-----SCDVLRPYVAHIDDIFKDFTSYKVRVPVTGAIIL 115
           VE NPSLKSF LKEFTSLM       SC  L  Y  +   +     + + R         
Sbjct: 61  VEKNPSLKSFNLKEFTSLMIGFVFQASCSCLG-YCCNGQFVKTKEVAQRTR--------- 110

Query: 116 DETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKI 175
            +    C+LVKGWKG+SWSFPRGKKNKDEEDHACAIREV EETGFDVS LLNK+E+IE++
Sbjct: 111 -KQTRYCLLVKGWKGTSWSFPRGKKNKDEEDHACAIREVLEETGFDVSNLLNKEEYIEEM 169

Query: 176 FGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPASDDVISHGVTGLKLYMVA 235
           FGQQRV+LYIIAGV+DDTAFAP TKKEISEIAW RLDELQP SDDVIS G+TGLKLYMVA
Sbjct: 170 FGQQRVKLYIIAGVKDDTAFAPLTKKEISEIAWHRLDELQPGSDDVISRGITGLKLYMVA 229

Query: 236 PFLASLKKWISAHKPSIAPKHDMPLKGVCVWKAKNNSIGSNTIALESQLTKVASDSQPPD 295
           PFL SLK WIS H+P +AP+ D+PLKG+C+WKAKN SIGS T  +E++  K  +DS PPD
Sbjct: 230 PFLQSLKLWISKHQPPVAPRPDLPLKGMCMWKAKNTSIGSGTQIMEARSMKAGTDSHPPD 289

Query: 296 TGPGKSFRNFRFDTAAILQAMEAGF 320
           TGPGKSFR+FRFD   ILQAMEAGF
Sbjct: 290 TGPGKSFRSFRFDIGGILQAMEAGF 314

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30684475|ref|NP_196861.2| mRNA-decapping enzyme subunit 2 [Arabidopsis thaliana] gi|75328895|sp|Q8GW31.1|DCP2_ARATH RecName: Full=mRNA-decapping enzyme subunit 2; Short=AtDCP2; Short=Protein DECAPPING 2; AltName: Full=M(7)GpppN-mRNA hydrolase DCP2; AltName: Full=Protein TRIDENT gi|26453220|dbj|BAC43684.1| unknown protein [Arabidopsis thaliana] gi|28950945|gb|AAO63396.1| At5g13570 [Arabidopsis thaliana] gi|332004529|gb|AED91912.1| mRNA-decapping enzyme subunit 2 [Arabidopsis thaliana]

 Score =  459 bits (1181), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 235/371 (63%), Positives = 273/371 (73%), Gaps = 53/371 (14%)

Query: 1   MSGLPRSSSAPFKNGG--LPPQELLDDLCSRFVLNVPQEDQQSFERILFLVEYAHWFYED 58
           MSGL RSSS+  KN G  LP +ELLDDLCSRFVLNVP+EDQQSFERILFLVEYA+W+YED
Sbjct: 1   MSGLHRSSSS-SKNIGNCLPSKELLDDLCSRFVLNVPEEDQQSFERILFLVEYAYWYYED 59

Query: 59  NSVENNPSLKSFTLKEFTSLMFNSCDVLRPYVAHIDDIFKDFTSYKVRVPVTGAIILDET 118
           N+VEN+P LKS +LKEFTSL+FNSCDVLRPYV HIDDIFKDFTSYK RVPVTGAIILDET
Sbjct: 60  NAVENDPKLKSLSLKEFTSLLFNSCDVLRPYVTHIDDIFKDFTSYKCRVPVTGAIILDET 119

Query: 119 YERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQ 178
           YERC+LVKGWKGSSWSFPRGKK+KDEEDHACAIREV EETGFDVSKLL ++E+IE +F Q
Sbjct: 120 YERCLLVKGWKGSSWSFPRGKKSKDEEDHACAIREVLEETGFDVSKLLKREEYIEFVFRQ 179

Query: 179 QRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPASDDVISHGVTGLKLYMVAPFL 238
           QRVRLYI+AGV +DT FAP TKKEISEI W RLD LQPAS++VI+HGV+GLKLYMVAPFL
Sbjct: 180 QRVRLYIVAGVTEDTVFAPLTKKEISEITWHRLDHLQPASNEVITHGVSGLKLYMVAPFL 239

Query: 239 ASLKKWISAHKPSIAPKHDMPLKGVCVWKAKNNSIGSNTIALESQ-------LTKVASDS 291
           +SLK WI  H   +A + + PLK +CVW A+ +  G+ T  +ESQ        T + S+S
Sbjct: 240 SSLKSWILKHPSPVARRPNKPLKALCVWNARTSVGGNGTATVESQNRKSELRTTTMESNS 299

Query: 292 QPP-------------------------------------------DTGPGKSFRNFRFD 308
           + P                                           D  PG SF NF+F+
Sbjct: 300 RKPELKRTTMESHSTKPELRKGTMESHNTTATVESHNTKPVVDHSQDIKPGGSFINFKFN 359

Query: 309 TAAILQAMEAG 319
            + ILQA+E+G
Sbjct: 360 QSVILQALESG 370

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	322
RGD|1562909	422	Dcp2 "DCP2 decapping enzyme ho	0.708	0.540	0.426	2.1e-54
POMBASE|SPAC19A8.12	741	dcp2 "mRNA decapping complex c	0.813	0.353	0.452	4.3e-54
ZFIN|ZDB-GENE-040426-851	397	dcp2 "DCP2 decapping enzyme ho	0.857	0.695	0.390	2e-53
DICTYBASE|DDB_G0283315	620	dcp2 "mRNA-decapping enzyme 2"	0.704	0.366	0.456	3.5e-52
MGI|MGI:1917890	422	Dcp2 "DCP2 decapping enzyme ho	0.708	0.540	0.426	2e-51
UNIPROTKB|J9NVA8	422	DCP2 "Uncharacterized protein"	0.708	0.540	0.422	3.3e-51
UNIPROTKB|F1RLG6	427	DCP2 "Uncharacterized protein"	0.708	0.533	0.424	3.3e-51
UNIPROTKB|Q5REQ8	385	DCP2 "m7GpppN-mRNA hydrolase"	0.708	0.592	0.418	4.2e-51
ASPGD|ASPL0000062217	825	AN10010 [Emericella nidulans (	0.854	0.333	0.429	4.4e-51
UNIPROTKB|G3MYZ4	428	DCP2 "Uncharacterized protein"	0.708	0.532	0.423	6.8e-51

RGD|1562909 Dcp2 "DCP2 decapping enzyme homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 512 (185.3 bits), Expect = 2.1e-54, Sum P(3) = 2.1e-54
 Identities = 99/232 (42%), Positives = 141/232 (60%)

Query:    19 PQELLDDLCSRFVLNVPQEDQQSFERILFLVEYAHWFYEDNSVENNPSLKSFTLKEFTSL 78
             P  +LDDLCSRF+L++P E++ +  R+ F +E AHWFY D  ++N P L    +++F   
Sbjct:     9 PGSVLDDLCSRFILHIPSEERDNAIRVCFQIELAHWFYLDFYMQNTPGLPQCGIRDFAKA 68

Query:    79 MFNSCDVLRPYVAHIDDIFKDFTSYKVRVPVTGAIILDETYERCILVKGWKGSS-WSFPR 137
             +F+ C  L P    ++ I  ++  YK+ VP  GAIILDET E  +LV+G+   S W FP+
Sbjct:    69 VFSHCPFLLPQGEDVEKILDEWKEYKMGVPTYGAIILDETLENVLLVQGYLAKSGWGFPK 128

Query:   138 GKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQQRVRLYIIAGVRDDTAFAP 197
             GK NK+E  H CA REV EETGFD+   + KD++IE     Q  RLYII GV  DT F P
Sbjct:   129 GKVNKEEAPHDCAAREVFEETGFDIKDYICKDDYIELRINDQLARLYIIPGVPKDTKFNP 188

Query:   198 QTKKEISEIAWQRLDELQPASDDVISHGVTGL---KLYMVAPFLASLKKWIS 246
             +T++EI  I W  +++L    +D+      GL   K +M  PF+  L+ W+S
Sbjct:   189 KTRREIRNIEWFSIEKLPCHRNDMTPKSKLGLAPNKFFMAIPFIRPLRDWLS 240

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=ISO

GO:0000932 "cytoplasmic mRNA processing body" evidence=ISO

GO:0003723 "RNA binding" evidence=IEA

GO:0006402 "mRNA catabolic process" evidence=ISO

GO:0016442 "RNA-induced silencing complex" evidence=ISO

GO:0016787 "hydrolase activity" evidence=IEA

GO:0030145 "manganese ion binding" evidence=IEA

GO:0050072 "m7G(5')pppN diphosphatase activity" evidence=ISO

GO:0071044 "histone mRNA catabolic process" evidence=ISO

POMBASE|SPAC19A8.12 dcp2 "mRNA decapping complex catalytic subunit Dcp2" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 559 (201.8 bits), Expect = 4.3e-54, P = 4.3e-54
 Identities = 125/276 (45%), Positives = 164/276 (59%)

Query:    21 ELLDDLCSRFVLNVPQEDQQSFERILFLVEYAHWFYEDNSVENNPSLKSFTLKEFTSLMF 80
             ++LDDL +RF+LN+P E+Q S ER+ F +E AHWFYED     N  L S  L+ F++ +F
Sbjct:    10 QVLDDLSARFILNLPAEEQSSVERLCFQIEQAHWFYEDFIRAQNDQLPSLGLRVFSAKLF 69

Query:    81 NSCDVLRPYVAHIDDIFKDFTSYKVRVPVTGAIILDETYERCILVKGWKGSS-WSFPRGK 139
               C +L  +    ++ F DF  YK R+PV GAI+LD + ++C+LVKGWK SS W FP+GK
Sbjct:    70 AHCPLLWKWSKVHEEAFDDFLRYKTRIPVRGAIMLDMSMQQCVLVKGWKASSGWGFPKGK 129

Query:   140 KNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQQRVRLYIIAGVRDDTAFAPQT 199
              +KDE D  CAIREV EETGFD S  +N +EFI+     Q VRLYII G+  DT F  +T
Sbjct:   130 IDKDESDVDCAIREVYEETGFDCSSRINPNEFIDMTIRGQNVRLYIIPGISLDTRFESRT 189

Query:   200 KKEISEIAWQRLDELQPASDDVISHGVTGLKLYMVAPFLASLKKWISAHKPSIAPKHDMP 259
             +KEIS+I W  L +L P         +   K YMV PFLA LKKWI   K +IA      
Sbjct:   190 RKEISKIEWHNLMDL-PTFKKNKPQTMKN-KFYMVIPFLAPLKKWIK--KRNIANN---- 241

Query:   260 LKGVCVWKAKNNSIGSNTIALESQLTKVASDSQPPD 295
                    K KN S+  +  A    L+ + S + P D
Sbjct:   242 -----TTKEKNISVDVDADASSQLLSLLKSSTAPSD 272

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=IGI

GO:0000287 "magnesium ion binding" evidence=TAS

GO:0000290 "deadenylation-dependent decapping of nuclear-transcribed mRNA" evidence=ISO

GO:0000340 "RNA 7-methylguanosine cap binding" evidence=IGI

GO:0000932 "cytoplasmic mRNA processing body" evidence=IGI

GO:0005515 "protein binding" evidence=IPI

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0005737 "cytoplasm" evidence=ISO;IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005845 "mRNA cap binding complex" evidence=IGI;IDA

GO:0006397 "mRNA processing" evidence=NAS

GO:0030145 "manganese ion binding" evidence=IEA

GO:0031087 "deadenylation-independent decapping of nuclear-transcribed mRNA" evidence=ISO

GO:0050072 "m7G(5')pppN diphosphatase activity" evidence=IGI;IDA

ZFIN|ZDB-GENE-040426-851 dcp2 "DCP2 decapping enzyme homolog (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 530 (191.6 bits), Expect = 2.0e-53, Sum P(2) = 2.0e-53
 Identities = 111/284 (39%), Positives = 165/284 (58%)

Query:    13 KNGGLPPQELLDDLCSRFVLNVPQEDQQSFERILFLVEYAHWFYEDNSVENNPSLKSFTL 72
             K G +P + LLDDLCSRF+L++P E++ +  R+ F +E AHWFY D  ++N+P L    +
Sbjct:     4 KRGEIP-RGLLDDLCSRFILHIPSEERDNAIRVCFQIELAHWFYLDFCMQNSPGLPQCGI 62

Query:    73 KEFTSLMFNSCDVLRPYVAHIDDIFKDFTSYKVRVPVTGAIILDETYERCILVKGWKGSS 132
             ++F   +F+ C  L P    +  + + +  YK+ VP  GAIILDET +  ++V+G+   S
Sbjct:    63 RDFAKAVFSHCPFLLPQGEDVQKVLEQWKEYKMGVPTFGAIILDETLDNVLMVQGYLAKS 122

Query:   133 -WSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQQRVRLYIIAGVRD 191
              W FP+GK N+DE  H CA+REV EETGFD+   + K  +IE+    Q  RLYII GV  
Sbjct:   123 GWGFPKGKVNEDEAFHDCAVREVLEETGFDIRDRICKKTYIEQRISDQLARLYIIPGVPK 182

Query:   192 DTAFAPQTKKEISEIAWQRLDELQPASDDVISHGVTGL---KLYMVAPFLASLKKWISAH 248
             DT F P+T+KEI  I W  +++L    +D+      GL   K +M  PF+  LK+WI+ H
Sbjct:   183 DTKFNPKTRKEIRNIEWFPVEKLPCHRNDMTPKSKLGLAPNKFFMAIPFMRQLKEWIAKH 242

Query:   249 K-PSIAPKHDMPLKGVCVWKAKNNSIGSNTIALESQLTKVASDS 291
             K  S +   D    G    K   +    + + +ES  + V++DS
Sbjct:   243 KGESTSSDEDFASNGSTPCKPFRSKPRRSQLLVES--SPVSADS 284

GO:0016787 "hydrolase activity" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0030145 "manganese ion binding" evidence=IEA

DICTYBASE|DDB_G0283315 dcp2 "mRNA-decapping enzyme 2" [Dictyostelium discoideum (taxid:44689)]

 Score = 541 (195.5 bits), Expect = 3.5e-52, P = 3.5e-52
 Identities = 105/230 (45%), Positives = 151/230 (65%)

Query:    21 ELLDDLCSRFVLNVPQEDQQSFERILFLVEYAHWFYEDNSVENNPSLKSFTLKEFTSLMF 80
             E+ DDL SRFVLN+P E+  SFER+LF +E A+WFY+D   E+ P L  +++ EFT   F
Sbjct:   172 EIFDDLSSRFVLNIPAEELSSFERLLFQIETAYWFYDDFYREDFPQLPKYSMGEFTKNFF 231

Query:    81 NSCDVLRPYVAHIDDIFKDFTSYKVRVPVTGAIILDETYERCILVKGW-KGSSWSFPRGK 139
              +C +L+ + + +++I K F+ YK +VPV GAIIL++  E+ + V+G+   +SW FP+GK
Sbjct:   232 MNCPILKAHQSSVEEILKKFSEYKTKVPVFGAIILNQDLEKALFVRGYGSNNSWGFPKGK 291

Query:   140 KNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQQRVRLYIIAGVRDDTAFAPQT 199
              NKDE D  CAIREV EET FD+S  LN+  +IE    +Q+++LYIIAGV ++T F P+T
Sbjct:   292 VNKDEPDSDCAIREVFEETSFDISPYLNERHYIELNIKEQKIKLYIIAGVPEETYFYPRT 351

Query:   200 KKEISEIAWQRLDELQPASDDVISHGVTGLKLYMVAPFLASLKKWISAHK 249
             +KEI +I W  +++L P     IS G      Y   PF   L+KW+   K
Sbjct:   352 RKEIGKIEWVVINDL-PTIGKKIS-GSKERNFYRSFPFFNRLRKWVQLRK 399

GO:0030145 "manganese ion binding" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA;ISS

GO:0003723 "RNA binding" evidence=IEA

GO:0006402 "mRNA catabolic process" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0003729 "mRNA binding" evidence=ISS

MGI|MGI:1917890 Dcp2 "DCP2 decapping enzyme homolog (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 512 (185.3 bits), Expect = 2.0e-51, Sum P(2) = 2.0e-51
 Identities = 99/232 (42%), Positives = 141/232 (60%)

Query:    19 PQELLDDLCSRFVLNVPQEDQQSFERILFLVEYAHWFYEDNSVENNPSLKSFTLKEFTSL 78
             P  +LDDLCSRF+L++P E++ +  R+ F +E AHWFY D  ++N P L    +++F   
Sbjct:     9 PGSVLDDLCSRFILHIPSEERDNAIRVCFQIELAHWFYLDFYMQNTPGLPQCGIRDFAKA 68

Query:    79 MFNSCDVLRPYVAHIDDIFKDFTSYKVRVPVTGAIILDETYERCILVKGWKGSS-WSFPR 137
             +F+ C  L P    ++ I  ++  YK+ VP  GAIILDET E  +LV+G+   S W FP+
Sbjct:    69 VFSHCPFLLPQGEDVEKILDEWKEYKMGVPTYGAIILDETLENVLLVQGYLAKSGWGFPK 128

Query:   138 GKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQQRVRLYIIAGVRDDTAFAP 197
             GK NK+E  H CA REV EETGFD+   + KD++IE     Q  RLYII GV  DT F P
Sbjct:   129 GKVNKEEAPHDCAAREVFEETGFDIKDYICKDDYIELRINDQLARLYIIPGVPKDTKFNP 188

Query:   198 QTKKEISEIAWQRLDELQPASDDVISHGVTGL---KLYMVAPFLASLKKWIS 246
             +T++EI  I W  +++L    +D+      GL   K +M  PF+  L+ W+S
Sbjct:   189 KTRREIRNIEWFSIEKLPCHRNDMTPKSKLGLAPNKFFMAIPFIRPLRDWLS 240

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=ISO

GO:0000932 "cytoplasmic mRNA processing body" evidence=ISO

GO:0003723 "RNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006402 "mRNA catabolic process" evidence=ISO;IMP

GO:0016442 "RNA-induced silencing complex" evidence=ISO

GO:0016787 "hydrolase activity" evidence=IEA

GO:0030145 "manganese ion binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0050072 "m7G(5')pppN diphosphatase activity" evidence=ISO

GO:0071044 "histone mRNA catabolic process" evidence=ISO

UNIPROTKB|J9NVA8 DCP2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 511 (184.9 bits), Expect = 3.3e-51, Sum P(2) = 3.3e-51
 Identities = 98/232 (42%), Positives = 141/232 (60%)

Query:    19 PQELLDDLCSRFVLNVPQEDQQSFERILFLVEYAHWFYEDNSVENNPSLKSFTLKEFTSL 78
             P  +LDDLCSRF+L++P E++ +  R+ F +E AHWFY D  ++N P L    +++F   
Sbjct:     9 PGSVLDDLCSRFILHIPSEERDNAIRVCFQIELAHWFYLDFYMQNTPGLPQCGIRDFAKA 68

Query:    79 MFNSCDVLRPYVAHIDDIFKDFTSYKVRVPVTGAIILDETYERCILVKGWKGSS-WSFPR 137
             +F+ C  L P    ++ I  ++  YK+ VP  GAIILDET E  +LV+G+   S W FP+
Sbjct:    69 VFSHCPFLLPQGEDVEKILDEWKEYKMGVPTYGAIILDETLENVLLVQGYLAKSGWGFPK 128

Query:   138 GKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQQRVRLYIIAGVRDDTAFAP 197
             GK NK+E  H CA REV EETGFD+   + KD++IE     Q  RLYII G+  DT F P
Sbjct:   129 GKVNKEEAPHDCAAREVFEETGFDIKDYICKDDYIELRINDQLARLYIIPGIPKDTKFNP 188

Query:   198 QTKKEISEIAWQRLDELQPASDDVISHGVTGL---KLYMVAPFLASLKKWIS 246
             +T++EI  I W  +++L    +D+      GL   K +M  PF+  L+ W+S
Sbjct:   189 KTRREIRNIEWFSIEKLPCHRNDMTPKSKLGLAPNKFFMAIPFIRPLRDWLS 240

GO:0030145 "manganese ion binding" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

UNIPROTKB|F1RLG6 DCP2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 511 (184.9 bits), Expect = 3.3e-51, Sum P(2) = 3.3e-51
 Identities = 99/233 (42%), Positives = 142/233 (60%)

Query:    19 PQELLDDLCSRFVLNVPQEDQQSFERILFLVEYAHWFYEDNSVENNPSLKSFTLKEFTS- 77
             P  +LDDLCSRF+L++P E++ +  R+ F +E AHWFY D  ++N P L    +++F   
Sbjct:     9 PGSVLDDLCSRFILHIPSEERDNAIRVCFQIELAHWFYLDFYMQNTPGLPQCGIRDFAKG 68

Query:    78 LMFNSCDVLRPYVAHIDDIFKDFTSYKVRVPVTGAIILDETYERCILVKGWKGSS-WSFP 136
             ++FN C  L P    ++ I  ++  YK+ VP  GAIILDET E  +LV+G+   S W FP
Sbjct:    69 ILFNHCPFLLPQGEDVEKILDEWKEYKMGVPTYGAIILDETLENVLLVQGYLAKSGWGFP 128

Query:   137 RGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQQRVRLYIIAGVRDDTAFA 196
             +GK NK+E  H CA REV EETGFD+   + KD++IE     Q  RLYII G+  DT F 
Sbjct:   129 KGKVNKEEAPHDCAAREVFEETGFDIKDYICKDDYIELRINDQLARLYIIPGIPKDTKFN 188

Query:   197 PQTKKEISEIAWQRLDELQPASDDVISHGVTGL---KLYMVAPFLASLKKWIS 246
             P+T++EI  I W  +++L    +D+      GL   K +M  PF+  L+ W+S
Sbjct:   189 PKTRREIRNIEWFSIEKLPCHRNDMTPKSKLGLAPNKFFMAIPFIRPLRDWLS 241

GO:0071044 "histone mRNA catabolic process" evidence=IEA

GO:0016442 "RNA-induced silencing complex" evidence=IEA

GO:0000932 "cytoplasmic mRNA processing body" evidence=IEA

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=IEA

GO:0030145 "manganese ion binding" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

UNIPROTKB|Q5REQ8 DCP2 "m7GpppN-mRNA hydrolase" [Pongo abelii (taxid:9601)]

 Score = 510 (184.6 bits), Expect = 4.2e-51, Sum P(2) = 4.2e-51
 Identities = 97/232 (41%), Positives = 141/232 (60%)

Query:    19 PQELLDDLCSRFVLNVPQEDQQSFERILFLVEYAHWFYEDNSVENNPSLKSFTLKEFTSL 78
             P  +LDDLCSRF+L++P E++ +  R+ F +E AHWFY D  ++N P L    +++F   
Sbjct:     9 PGSVLDDLCSRFILHIPSEERDNAIRVCFQIELAHWFYLDFYMQNTPGLSQCGIRDFAKA 68

Query:    79 MFNSCDVLRPYVAHIDDIFKDFTSYKVRVPVTGAIILDETYERCILVKGWKGSS-WSFPR 137
             +F+ C  L P    ++ +  ++  YK+ VP  GAIILDET E  +LV+G+   S W FP+
Sbjct:    69 VFSHCPFLLPEGEDVEKVLDEWKEYKMGVPTYGAIILDETLENVLLVQGYLAKSGWGFPK 128

Query:   138 GKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQQRVRLYIIAGVRDDTAFAP 197
             GK NK+E  H CA REV EETGFD+   + KD++IE     Q  RLYII G+  DT F P
Sbjct:   129 GKVNKEEAPHDCAAREVFEETGFDIKDYICKDDYIELRINDQLARLYIIPGIPKDTKFNP 188

Query:   198 QTKKEISEIAWQRLDELQPASDDVISHGVTGL---KLYMVAPFLASLKKWIS 246
             +T++EI  I W  +++L    +D+      GL   K +M  PF+  L+ W+S
Sbjct:   189 KTRREIRNIEWFSIEKLPCHRNDMTPKSKLGLAPNKFFMAIPFIRPLRDWLS 240

GO:0006402 "mRNA catabolic process" evidence=ISS

GO:0050072 "m7G(5')pppN diphosphatase activity" evidence=ISS

GO:0071044 "histone mRNA catabolic process" evidence=ISS

ASPGD|ASPL0000062217 AN10010 [Emericella nidulans (taxid:162425)]

 Score = 535 (193.4 bits), Expect = 4.4e-51, P = 4.4e-51
 Identities = 125/291 (42%), Positives = 171/291 (58%)

Query:    20 QELLDDLCSRFVLNVPQEDQQSFERILFLVEYAHWFYEDNSVENNPSLKSFTLKEFTSLM 79
             ++ LDDLC RF++N+P+E+ +S ERI F VE A WFYED     +P+L S +LK F   +
Sbjct:     9 EDWLDDLCVRFIINLPREELESVERICFQVEEAQWFYEDFIRPLDPALPSLSLKAFALRI 68

Query:    80 FNSCDVLRPYVA-HIDDIFKDFTSYKVRVPVTGAIILDETYERCILVKGWK-GSSWSFPR 137
             F  C ++  +   H    F +F +YK RVPV GAI+L++  ++ +LVKGWK G++WSFPR
Sbjct:    69 FQHCPLMANWSRYHHMTAFSEFLAYKTRVPVRGAIMLNQEMDQVVLVKGWKKGANWSFPR 128

Query:   138 GKKNKDEEDHACAIREVQEETGFDVSK--LLNKDE---FIEKIFGQQRVRLYIIAGVRDD 192
             GK NKDE+D  CAIREV EETG+DV +  L+  DE   FIE    +Q +RLY+  GV  D
Sbjct:   129 GKINKDEKDLDCAIREVYEETGYDVREAGLVPNDENVKFIEITMREQHMRLYVFRGVPQD 188

Query:   193 TAFAPQTKKEISEIAWQRLDELQPASD----DVISHGVTGLKLYMVAPFLASLKKWISAH 248
               F P+T+KEIS+I W +L +L         D         K YMVAPFL  LKKWI+  
Sbjct:   189 AYFEPRTRKEISKIEWWKLSDLPTLKKSKQFDQGQAAANANKFYMVAPFLHPLKKWIAQQ 248

Query:   249 KPSIAPKHDMPLKGVCV---WKAKNNSIGSNTIALESQLT-KVASDSQPPD 295
             K  + P+ +     V V        N   SN   + SQ++ + A  S  P+
Sbjct:   249 K-KLDPRTNSDSNQVLVDGEISMDENYQTSNANHVSSQVSMEAAVPSDLPE 298

GO:0008150 "biological_process" evidence=ND

GO:0030145 "manganese ion binding" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|G3MYZ4 DCP2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 508 (183.9 bits), Expect = 6.8e-51, Sum P(2) = 6.8e-51
 Identities = 99/234 (42%), Positives = 142/234 (60%)

Query:    19 PQELLDDLCSRFVLNVPQEDQQSFERILFLVEYAHWFYEDNSVENNPSLKSFTLKEFTS- 77
             P  +LDDLCSRF+L++P E++ +  R+ F +E AHWFY D  ++N P L    +++F   
Sbjct:     9 PGSVLDDLCSRFILHIPSEERDNAIRVCFQIELAHWFYLDFYMQNTPGLPQCGIRDFAKD 68

Query:    78 -LMFNSCDVLRPYVAHIDDIFKDFTSYKVRVPVTGAIILDETYERCILVKGWKGSS-WSF 135
              ++FN C  L P    ++ I  ++  YK+ VP  GAIILDET E  +LV+G+   S W F
Sbjct:    69 GVLFNHCPFLLPQGEDVEKILDEWKEYKMGVPTYGAIILDETLENVLLVQGYLAKSGWGF 128

Query:   136 PRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQQRVRLYIIAGVRDDTAF 195
             P+GK NK+E  H CA REV EETGFD+   + KD++IE     Q  RLYII G+  DT F
Sbjct:   129 PKGKVNKEEAPHDCAAREVFEETGFDIKDYICKDDYIELRINDQLARLYIIPGIPKDTKF 188

Query:   196 APQTKKEISEIAWQRLDELQPASDDVISHGVTGL---KLYMVAPFLASLKKWIS 246
              P+T++EI  I W  +++L    +D+      GL   K +M  PF+  L+ W+S
Sbjct:   189 NPKTRREIRNIEWFSIEKLPCHRNDMTPKSKLGLAPNKFFMAIPFIRPLRDWLS 242

GO:0071044 "histone mRNA catabolic process" evidence=IEA

GO:0016442 "RNA-induced silencing complex" evidence=IEA

GO:0000932 "cytoplasmic mRNA processing body" evidence=IEA

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=IEA

GO:0030145 "manganese ion binding" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8GW31	DCP2_ARATH	3, ., 6, ., 1, ., 6, 2	0.6334	0.9875	0.8525	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.6.1	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00080336 hypothetical protein (323 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	322
cd03672	145	cd03672, Dcp2p, mRNA decapping enzyme 2 (Dcp2p), t	4e-73
pfam05026	85	pfam05026, DCP2, Dcp2, box A domain	5e-31
pfam00293	133	pfam00293, NUDIX, NUDIX domain	6e-15
cd02883	123	cd02883, Nudix_Hydrolase, Nudix hydrolase is a sup	1e-13
cd03428	130	cd03428, Ap4A_hydrolase_human_like, Diadenosine te	2e-12
COG0494	161	COG0494, MutT, NTP pyrophosphohydrolases including	2e-09
cd03673	131	cd03673, Ap6A_hydrolase, Diadenosine hexaphosphate	2e-08
cd04673	122	cd04673, Nudix_Hydrolase_15, Members of the Nudix	3e-08
cd04676	129	cd04676, Nudix_Hydrolase_17, Members of the Nudix	3e-07
COG1051	145	COG1051, COG1051, ADP-ribose pyrophosphatase [Nucl	4e-07
cd04667	112	cd04667, Nudix_Hydrolase_10, Members of the Nudix	6e-06
cd03425	124	cd03425, MutT_pyrophosphohydrolase, The MutT pyrop	8e-06
cd03424	137	cd03424, ADPRase_NUDT5, ADP-ribose pyrophosphatase	1e-05
cd03427	137	cd03427, MTH1, MutT homolog-1 (MTH1) is a member o	1e-05
cd04678	129	cd04678, Nudix_Hydrolase_19, Members of the Nudix	2e-05
cd04680	120	cd04680, Nudix_Hydrolase_21, Members of the Nudix	3e-05
cd04679	125	cd04679, Nudix_Hydrolase_20, Members of the Nudix	4e-05
cd04670	127	cd04670, Nudix_Hydrolase_12, Members of the Nudix	6e-05
cd04690	118	cd04690, Nudix_Hydrolase_31, Members of the Nudix	8e-05
cd04699	129	cd04699, Nudix_Hydrolase_39, Members of the Nudix	2e-04
cd04700	142	cd04700, DR1025_like, DR1025 from Deinococcus radi	6e-04
cd04692	144	cd04692, Nudix_Hydrolase_33, Members of the Nudix	0.002
cd03671	147	cd03671, Ap4A_hydrolase_plant_like, Diadenosine te	0.002
PRK10776	129	PRK10776, PRK10776, nucleoside triphosphate pyroph	0.003
cd04677	132	cd04677, Nudix_Hydrolase_18, Members of the Nudix	0.003
cd04697	126	cd04697, Nudix_Hydrolase_38, Members of the Nudix	0.004
cd03426	157	cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse)	0.004

>gnl|CDD|239644 cd03672, Dcp2p, mRNA decapping enzyme 2 (Dcp2p), the catalytic subunit, and Dcp1p are the two components of the decapping enzyme complex

 Score =  222 bits (567), Expect = 4e-73
 Identities = 78/143 (54%), Positives = 103/143 (72%), Gaps = 1/143 (0%)

Query: 107 VPVTGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLL 166
           +PV GAIIL+E  ++ +LVKGWK  SWSFP+GK NKDE+DH CAIREV EETGFD+SK +
Sbjct: 1   IPVYGAIILNEDLDKVLLVKGWKSKSWSFPKGKINKDEDDHDCAIREVYEETGFDISKYI 60

Query: 167 NKDEFIEKIFGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPASDDVISHGV 226
           +KD++IE I   Q V+LYI+ GV +DT F P+T+KEIS+I W  + +L    +  I  G+
Sbjct: 61  DKDDYIELIIRGQNVKLYIVPGVPEDTPFEPKTRKEISKIEWFDIKDLPTKKNKKIP-GL 119

Query: 227 TGLKLYMVAPFLASLKKWISAHK 249
              K +MV PF+  LKKWI+  K
Sbjct: 120 NSNKFFMVIPFIKPLKKWINRQK 142

Decapping is a key step in both general and nonsense-mediated 5'->3' mRNA-decay pathways. Dcp2p contains an all-alpha helical N-terminal domain and a C-terminal domain which has the Nudix fold. While decapping is not dependent on the N-terminus of Dcp2p, it does affect its efficiency. Dcp1p binds the N-terminal domain of Dcp2p stimulating the decapping activity of Dcp2p. Decapping permits the degradation of the transcript and is a site of numerous control inputs. It is responsible for nonsense-mediated decay as well as AU-rich element (ARE)-mediated decay. In addition, it may also play a role in the levels of mRNA. Enzymes belonging to the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V). Length = 145

>gnl|CDD|191168 pfam05026, DCP2, Dcp2, box A domain

 Score =  111 bits (280), Expect = 5e-31
 Identities = 35/85 (41%), Positives = 53/85 (62%)

Query: 20  QELLDDLCSRFVLNVPQEDQQSFERILFLVEYAHWFYEDNSVENNPSLKSFTLKEFTSLM 79
            ++LDDLC RF++N+P+E+  S ER+ F +E AHWFYED     NPSL S +L++F   +
Sbjct: 1   DDILDDLCVRFIINLPEEELSSVERVCFQIEEAHWFYEDFYRPLNPSLPSLSLRDFAQQI 60

Query: 80  FNSCDVLRPYVAHIDDIFKDFTSYK 104
           F  C +L  +    ++  + F  YK
Sbjct: 61  FEHCPLLWKWKEDHEEALEKFKRYK 85

This domain is always found to the amino terminal side of pfam00293. This domain is specific to mRNA decapping protein 2 and this region has been termed Box A. Removal of the cap structure is catalyzed by the Dcp1-Dcp2 complex. Length = 85

>gnl|CDD|215841 pfam00293, NUDIX, NUDIX domain

 Score = 70.2 bits (172), Expect = 6e-15
 Identities = 30/121 (24%), Positives = 46/121 (38%), Gaps = 7/121 (5%)

Query: 106 RVPVTGAIILDETYERCILVKGWKGSS----WSFPRGKKNKDEEDHACAIREVQEETGFD 161
           R    G ++L+E     +LV+  +       W  P GK    E     A+RE++EETG  
Sbjct: 1   RRRAVGVVLLNEDG-EVLLVRRSRPPVFPGLWELPGGKVEPGESPEEAAVRELEEETGLR 59

Query: 162 VSKLLNKDEFIEKIFGQQR--VRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPASD 219
           V  LL          G+         +A +          + E+SE+ W  L+EL     
Sbjct: 60  VLLLLLLGVLEYPAPGRDGGEHVHVFLAELLGGEPEPQPNEDEVSEVRWVPLEELLELLL 119

Query: 220 D 220
            
Sbjct: 120 A 120

Length = 133

>gnl|CDD|239217 cd02883, Nudix_Hydrolase, Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 66.4 bits (162), Expect = 1e-13
 Identities = 38/111 (34%), Positives = 47/111 (42%), Gaps = 6/111 (5%)

Query: 108 PVTGAIILDETYERCILVK--GWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKL 165
              GA+ILDE   R +LV+     G  W  P G     E     AIREV+EETG DV  L
Sbjct: 1   VAVGAVILDED-GRVLLVRRADSPGGLWELPGGGVEPGETLEEAAIREVREETGLDVDVL 59

Query: 166 LNKDEF--IEKIFGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDEL 214
                +       G+  V    +A +            EISE+ W  LDEL
Sbjct: 60  RLLGVYEVESPDEGEHAVVFVFLARLVGGEP-TLLPPDEISEVRWVTLDEL 109

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzymes. Substrate specificity is used to define child families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. This superfamily consists of at least nine families: IPP (isopentenyl diphosphate) isomerase, ADP ribose pyrophosphatase, mutT pyrophosphohydrolase, coenzyme-A pyrophosphatase, MTH1-7,8-dihydro-8-oxoguanine-triphosphatase, diadenosine tetraphosphate hydrolase, NADH pyrophosphatase, GDP-mannose hydrolase and the c-terminal portion of the mutY adenine glycosylase. Length = 123

>gnl|CDD|239520 cd03428, Ap4A_hydrolase_human_like, Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily

 Score = 63.0 bits (154), Expect = 2e-12
 Identities = 32/111 (28%), Positives = 48/111 (43%), Gaps = 9/111 (8%)

Query: 111 GAIIL--DETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNK 168
           GAII          +L++   G  W FP+G     E+D   A+RE +EETG    +L   
Sbjct: 6   GAIIYRRLNNEIEYLLLQASYGH-WDFPKGHVEPGEDDLEAALRETEEETGITAEQLFIV 64

Query: 169 DEFIEKIFGQQRVRL----YIIAGVRDDTAFAPQTKKEISEIAWQRLDELQ 215
             F E +  Q R +L    Y +A +R D     +  +E  +  W   +E  
Sbjct: 65  LGFKETLNYQVRGKLKTVTYFLAELRPDV--EVKLSEEHQDYRWLPYEEAL 113

Ap4A hydrolases are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one subfamily and fungi/animals/archaea enzymes, represented by this subfamily, fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val) that functions as a metal binding and catalytic site, and a required divalent cation, Ap4A hydrolase is structurally similar to the other members of the nudix superfamily with some degree of variation. Several regions in the sequences are poorly defined and substrate and metal binding sites are only predicted based on kinetic studies. Length = 130

>gnl|CDD|223568 COG0494, MutT, NTP pyrophosphohydrolases including oxidative damage repair enzymes [DNA replication, recombination, and repair / General function prediction only]

 Score = 55.2 bits (132), Expect = 2e-09
 Identities = 31/124 (25%), Positives = 47/124 (37%), Gaps = 14/124 (11%)

Query: 106 RVPVTGAIILDETYERCILVKGWK--GSSWSFPRGKKNKDEEDH-ACAIREVQEETGFDV 162
              V  A+++       +L+   +  G  W  P GK    EE     A RE++EETG  V
Sbjct: 9   VRDVAVAVLVGRDGPGEVLLAQRRDDGGLWELPGGKVEPGEELPEEAAARELEEETGLRV 68

Query: 163 SKL-------LNKDEFIEKIFGQQRVRLYIIAGVRDDTAFAPQTKK----EISEIAWQRL 211
                                G +  R++ +A V D  A A +       E+ ++ W  L
Sbjct: 69  KDERLELLGEFPPSPGDGSSVGGREHRVFFVAEVDDSLAVAIEGLSAPSEELEDLEWVPL 128

Query: 212 DELQ 215
           DEL 
Sbjct: 129 DELA 132

Length = 161

>gnl|CDD|239645 cd03673, Ap6A_hydrolase, Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily

 Score = 51.5 bits (124), Expect = 2e-08
 Identities = 26/101 (25%), Positives = 39/101 (38%), Gaps = 17/101 (16%)

Query: 124 LVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKL----------LNKDEFIE 173
           L+   +G  WS P+GK    E     A+REV+EETG                 +  + + 
Sbjct: 20  LIHRPRGDDWSLPKGKLEPGETPPEAAVREVEEETGIRAEVGDPLGTIRYWFSSSGKRVH 79

Query: 174 KIFGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDEL 214
           K      V  + +        F PQ  +E+ E+ W   DE 
Sbjct: 80  K-----TVHWW-LMRALGGE-FTPQPDEEVDEVRWLPPDEA 113

Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Length = 131

>gnl|CDD|240030 cd04673, Nudix_Hydrolase_15, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 50.7 bits (122), Expect = 3e-08
 Identities = 31/115 (26%), Positives = 46/115 (40%), Gaps = 16/115 (13%)

Query: 110 TGAIILDETYERCILVK-------GWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDV 162
            GA++      R +LV+       G     WSFP GK    E     A+RE+ EETG + 
Sbjct: 3   VGAVVFRG--GRVLLVRRANPPDAGL----WSFPGGKVELGETLEQAALRELLEETGLEA 56

Query: 163 S--KLLNKDEFIEKIFGQQRVRLYIIAGVR-DDTAFAPQTKKEISEIAWQRLDEL 214
              +LL   + IE+    +    Y++           P    +  +  W  LDEL
Sbjct: 57  EVGRLLTVVDVIERDAAGRVEFHYVLIDFLCRYLGGEPVAGDDALDARWVPLDEL 111

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 122

>gnl|CDD|240032 cd04676, Nudix_Hydrolase_17, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 48.5 bits (116), Expect = 3e-07
 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 1/56 (1%)

Query: 107 VPVTGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDV 162
           +P   A++ D+   R +L++      W+ P G     E     A+REV+EETG DV
Sbjct: 2   LPGVTAVVRDDE-GRVLLIRRSDNGLWALPGGAVEPGESPADTAVREVREETGLDV 56

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 129

>gnl|CDD|223979 COG1051, COG1051, ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]

 Score = 48.2 bits (115), Expect = 4e-07
 Identities = 30/118 (25%), Positives = 46/118 (38%), Gaps = 10/118 (8%)

Query: 103 YKVRVPVTGAIILDETYERCILVK----GWKGSSWSFPRGKKNKDEEDHACAIREVQEET 158
           Y+  +   GA+I+     R +LV+       G  W+ P G     E     A RE++EET
Sbjct: 6   YRTPLVAVGALIVRN--GRILLVRRANEPGAGY-WALPGGFVEIGETLEEAARRELKEET 62

Query: 159 GFDVS--KLLNKDEFIEKIFGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDEL 214
           G  V   +LL   +   +      V     A    +         + +E+ W  LDEL
Sbjct: 63  GLRVRVLELLAVFDDPGRDPRGHHVSFLFFA-AEPEGELLAGDGDDAAEVGWFPLDEL 119

Length = 145

>gnl|CDD|240025 cd04667, Nudix_Hydrolase_10, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 44.2 bits (105), Expect = 6e-06
 Identities = 27/89 (30%), Positives = 35/89 (39%), Gaps = 6/89 (6%)

Query: 129 KGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQQRVRLYIIAG 188
            GS W+ P GK    E     A RE+QEETG     LL    ++  + G        +A 
Sbjct: 19  SGSRWALPGGKIEPGETPLQAARRELQEETGLQGLDLL----YLFHVDGGSTRHHVFVAS 74

Query: 189 VRDDTAFAPQTKKEISEIAWQRLDELQPA 217
           V       P    EI++  W  LD L   
Sbjct: 75  VPPSAQPKPS--NEIADCRWLSLDALGDL 101

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 112

>gnl|CDD|239517 cd03425, MutT_pyrophosphohydrolase, The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi)

 Score = 44.0 bits (105), Expect = 8e-06
 Identities = 32/117 (27%), Positives = 50/117 (42%), Gaps = 19/117 (16%)

Query: 107 VPVTGAIILDETYERCILV------KGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGF 160
           + V  AII+D+     IL+      K   G  W FP GK    E      +RE++EE G 
Sbjct: 1   IEVVAAIIIDDDGR--ILIAQRPAGKHLGGL-WEFPGGKVEPGETPEQALVRELREELGI 57

Query: 161 DVS--KLLNKDEFIEKIFGQQRVRLYI-IAGVRDDTAFAPQTKKEISEIAWQRLDEL 214
           +V   +LL     +E  +  +RV L++ +  +            E  E+ W   +EL
Sbjct: 58  EVEVGELL---ATVEHDYPDKRVTLHVFLVELWSGEPQL----LEHQELRWVPPEEL 107

This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides. Length = 124

>gnl|CDD|239516 cd03424, ADPRase_NUDT5, ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate

 Score = 44.0 bits (105), Expect = 1e-05
 Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 11/63 (17%)

Query: 111 GAIILDETYERCIL--------VKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDV 162
              +L    +  ++        V GW       P G  +  E+    A RE++EETG++ 
Sbjct: 4   AVAVLPYDDDGKVVLVRQYRPPVGGW---LLELPAGLIDPGEDPEEAARRELEEETGYEA 60

Query: 163 SKL 165
             L
Sbjct: 61  GDL 63

Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirement for metal ions. NUDT5 forms a homodimer. Length = 137

>gnl|CDD|239519 cd03427, MTH1, MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily

 Score = 43.7 bits (104), Expect = 1e-05
 Identities = 27/111 (24%), Positives = 37/111 (33%), Gaps = 27/111 (24%)

Query: 126 KGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKL---------LNKDEFIEKIF 176
               G  W+ P GK    E    CAIRE++EETG  +  L            +E    +F
Sbjct: 22  GPGWGG-WNGPGGKVEPGETPEECAIRELKEETGLTIDNLKLVGIIKFPFPGEEERYGVF 80

Query: 177 GQQRVRLYIIAGVRDDTAFAPQTKKEISEI--AW---QRLDELQPASDDVI 222
                 +++       T F  +  KE  E    W     L  L     D  
Sbjct: 81  ------VFLA------TEFEGEPLKESEEGILDWFDIDDLPLLPMWPGDRE 119

MTH1, the mammalian counterpart of MutT, hydrolyzes oxidized purine nucleoside triphosphates, such as 8-oxo-dGTP and 2-hydroxy-ATP, to monophosphates, thereby preventing the incorporation of such oxygen radicals during replication. This is an important step in the repair mechanism in genomic and mitochondrial DNA. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity, and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. MTH1 is predominantly localized in the cytoplasm and mitochondria. Structurally, this enzyme adopts a similar fold to MutT despite low sequence similarity outside the conserved nudix motif. The most distinctive structural difference between MutT and MTH1 is the presence of a beta-hairpin, which is absent in MutT. This results in a much deeper and narrower substrate binding pocket. Mechanistically, MTH1 contains dual specificity for nucleotides that contain 2-OH-adenine bases and those that contain 8-oxo-guanine bases. Length = 137

>gnl|CDD|240034 cd04678, Nudix_Hydrolase_19, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 43.0 bits (102), Expect = 2e-05
 Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 7/65 (10%)

Query: 105 VRVPVTGAIILDETYERCILV---KGWKGS-SWSFPRGKKNKDEEDHACAIREVQEETGF 160
            RV V G  +L+   +  +L+   KG  G+ +W+ P G     E    CA REV EETG 
Sbjct: 1   PRVGV-GVFVLNP--KGKVLLGKRKGSHGAGTWALPGGHLEFGESFEECAAREVLEETGL 57

Query: 161 DVSKL 165
            +  +
Sbjct: 58  HIENV 62

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 129

>gnl|CDD|240036 cd04680, Nudix_Hydrolase_21, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 42.3 bits (100), Expect = 3e-05
 Identities = 26/110 (23%), Positives = 39/110 (35%), Gaps = 16/110 (14%)

Query: 112 AIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSK------- 164
           A++ D    R +LV+   G  W  P G   + E     A RE+ EE G  ++        
Sbjct: 5   AVVTDAD-GRVLLVRHTYGPGWYLPGGGLERGETFAEAARRELLEELGIRLAVVAELLGV 63

Query: 165 LLNKDEFIEKIFGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDEL 214
             +             V ++     R DT    +   EISE  +   D L
Sbjct: 64  YYHSASGS-----WDHVIVFR---ARADTQPVIRPSHEISEARFFPPDAL 105

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 120

>gnl|CDD|240035 cd04679, Nudix_Hydrolase_20, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 42.1 bits (99), Expect = 4e-05
 Identities = 32/116 (27%), Positives = 52/116 (44%), Gaps = 16/116 (13%)

Query: 111 GAIILDETYERCILVKGWKGSS---WSFPRGKKNKDEEDHACAIREVQEETGFDV--SKL 165
           GA IL +   + +LVK  +      W  P GK +  E      +RE++EETG  +  ++L
Sbjct: 6   GAAILRDD-GKLLLVKRLRAPEAGHWGIPGGKVDWMEAVEDAVVREIEEETGLSIHSTRL 64

Query: 166 LNKDEFIEKIFGQQRVRLYIIAGVRDDTAFAPQTK----KEISEIAWQRLDEL-QP 216
           L   + I +   Q  V    +A       F+ + +     ++ E+ W  LD L QP
Sbjct: 65  LCVVDHIIEEPPQHWVAPVYLA-----ENFSGEPRLMEPDKLLELGWFALDALPQP 115

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 125

>gnl|CDD|240027 cd04670, Nudix_Hydrolase_12, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 41.5 bits (98), Expect = 6e-05
 Identities = 31/121 (25%), Positives = 50/121 (41%), Gaps = 23/121 (19%)

Query: 111 GAIILDETYERCILV---KGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLN 167
           G ++L+E  E  +LV   +    + W  P G  +  E+    A+REV EETG        
Sbjct: 6   GGLVLNEKNE--VLVVQERNKTPNGWKLPGGLVDPGEDIFDGAVREVLEETG-------I 56

Query: 168 KDEFIEKIFGQQ--------RVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDEL--QPA 217
             EF+  + G +        +  LY I  ++  +        EI+   W  L+E   QP 
Sbjct: 57  DTEFVS-VVGFRHAHPGAFGKSDLYFICRLKPLSFDINFDTSEIAAAKWMPLEEYISQPI 115

Query: 218 S 218
           +
Sbjct: 116 T 116

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 127

>gnl|CDD|240046 cd04690, Nudix_Hydrolase_31, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 41.1 bits (97), Expect = 8e-05
 Identities = 30/107 (28%), Positives = 38/107 (35%), Gaps = 14/107 (13%)

Query: 109 VTGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNK 168
           +  A+IL     R +LV+      +  P GK    E      IRE+ EE G D    L+ 
Sbjct: 2   IAAALILVRD-GRVLLVRKRGTDVFYLPGGKIEAGETPLQALIRELSEELGLD----LDP 56

Query: 169 DEFIEKIFGQQRVRLYIIAGVR-DDTAFA------PQTKKEISEIAW 208
           D       G  R       GV    T +       P    EI EI W
Sbjct: 57  DSLEY--LGTFRAPAANEPGVDVRATVYVAELTGEPVPAAEIEEIRW 101

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 118

>gnl|CDD|240054 cd04699, Nudix_Hydrolase_39, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 29/113 (25%), Positives = 39/113 (34%), Gaps = 7/113 (6%)

Query: 107 VPVTGAIILDETYERCIL----VKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDV 162
           V    A+I+ +     IL     +      W  P GK  + E       REV EETG  V
Sbjct: 1   VVAVAALIVKDVGRILILKRSKDERTAPGKWELPGGKVEEGETFEEALKREVYEETGLTV 60

Query: 163 SKLLNKD-EFIEKIFGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDEL 214
           +  L        +  G   V   +        A   +   E  E AW  L+EL
Sbjct: 61  TPFLRYPSTVTHEDSGVYNVIYLVFVCEALSGAV--KLSDEHEEYAWVTLEEL 111

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 129

>gnl|CDD|240055 cd04700, DR1025_like, DR1025 from Deinococcus radiodurans, a member of the Nudix hydrolase superfamily, show nucleoside triphosphatase and dinucleoside polyphosphate pyrophosphatase activities

 Score = 39.1 bits (91), Expect = 6e-04
 Identities = 34/127 (26%), Positives = 50/127 (39%), Gaps = 21/127 (16%)

Query: 107 VPVT----GAIILDETYERCILVK---GWKGSSWSFPRGKKNKDEEDHACAIREVQEETG 159
           V V     GA+IL+E     +LV+   G K   W  P G     E     A+RE  EETG
Sbjct: 9   VEVEARAAGAVILNE-RNDVLLVQEKGGPKKGLWHIPSGAVEDGEFPQDAAVREACEETG 67

Query: 160 FDVSKLLNKDEFIEKIFGQ-----QRVRLYIIAGVRDDTAFAPQTKKEISE---IAWQRL 211
             V       +F+    G+       +R   +A     T  AP+   EI+E    + + +
Sbjct: 68  LRVR----PVKFLGTYLGRFDDGVLVLRHVWLAEPEGQTL-APKFTDEIAEASFFSREDV 122

Query: 212 DELQPAS 218
            +L    
Sbjct: 123 AQLYAQG 129

Like other enzymes belonging to this superfamily, it requires a divalent cation, in this case Mg2+, for its activity. It also contains a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. In general, substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 142

>gnl|CDD|240048 cd04692, Nudix_Hydrolase_33, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 37.7 bits (88), Expect = 0.002
 Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 9/73 (12%)

Query: 150 AIREVQEETGFDVSK--------LLNKDEFIEKIFGQQRVRLYIIAGVRDDTAFAPQTKK 201
            IRE++EE G DVS            + + I K+  ++   +Y+         F  Q K+
Sbjct: 53  GIRELEEELGLDVSADDLIPLGTFKIEYDHIGKLIDREFHHVYLYELKVPLEEFTLQ-KE 111

Query: 202 EISEIAWQRLDEL 214
           E++ +    LDE 
Sbjct: 112 EVAGVVLIPLDEF 124

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 144

>gnl|CDD|239643 cd03671, Ap4A_hydrolase_plant_like, Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily

 Score = 37.6 bits (88), Expect = 0.002
 Identities = 25/102 (24%), Positives = 40/102 (39%), Gaps = 18/102 (17%)

Query: 131 SSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKL-----------------LNKDEFIE 173
            +W FP+G  ++ E+    A+RE++EETG D   +                 L    +  
Sbjct: 27  GAWQFPQGGIDEGEDPEQAALRELEEETGLDPDSVEIIAEIPDWLRYDLPPELKLKIWGG 86

Query: 174 KIFGQ-QRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDEL 214
           +  GQ Q+  L+   G   +         E  E  W  L+EL
Sbjct: 87  RYRGQEQKWFLFRFTGDDSEIDLNAPEHPEFDEWRWVPLEEL 128

Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one group (represented by this subfamily) and fungi/animals/archaea enzymes fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for the inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU where U is Ile, Leu, or Val), Ap4A hydrolase is structurally similar to the other members of the nudix superfamily with some degree of variations. Several regions in the sequences are poorly defined and substrate and metal binding sites are only predicted based on kinetic studies. Length = 147

>gnl|CDD|182721 PRK10776, PRK10776, nucleoside triphosphate pyrophosphohydrolase; Provisional

 Score = 36.9 bits (86), Expect = 0.003
 Identities = 17/41 (41%), Positives = 19/41 (46%), Gaps = 2/41 (4%)

Query: 133 WSFPRGKKNKDEEDHACAIREVQEETGFDVS--KLLNKDEF 171
           W FP GK    E      IRE+QEE G  V    L  K E+
Sbjct: 33  WEFPGGKIEAGETPEQALIRELQEEVGITVQHATLFEKLEY 73

Length = 129

>gnl|CDD|240033 cd04677, Nudix_Hydrolase_18, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 36.8 bits (86), Expect = 0.003
 Identities = 21/73 (28%), Positives = 29/73 (39%), Gaps = 6/73 (8%)

Query: 150 AIREVQEETGFDVS--KLLNKD---EFIEKIFGQQRVRLYIIAGVRDDTAFAPQTK-KEI 203
           A RE++EETG +V   +LL      EF  K  G     +  +  V             E 
Sbjct: 49  ARRELKEETGLEVEELELLGVYSGKEFYVKPNGDDEQYIVTLYYVTKVFGGKLVPDGDET 108

Query: 204 SEIAWQRLDELQP 216
            E+ +  LDEL  
Sbjct: 109 LELKFFSLDELPE 121

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 132

>gnl|CDD|240053 cd04697, Nudix_Hydrolase_38, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 36.2 bits (84), Expect = 0.004
 Identities = 25/112 (22%), Positives = 42/112 (37%), Gaps = 10/112 (8%)

Query: 110 TGAIILDETYERCI----LVKGWKGSSWSFPRGKKNKDEED-HACAIREVQEETGFDVSK 164
           T   + +   + C+    L K W    W    G   +  E     A RE++EE G D  +
Sbjct: 3   TYIFVFNSEGKLCVHKRTLTKDWCPGYWDIAFGGVVQAGESYLQNAQRELEEELGIDGVQ 62

Query: 165 LLNKDEFIEKIFGQQRVRLYIIAGVRD-DTAFAPQTKKEISEIAWQRLDELQ 215
           L     F    +     R++        D     Q ++E+ EI W  ++E+ 
Sbjct: 63  LTPLGLF---YYDTDGNRVWGKVFSCVYDGPLKLQ-EEEVEEITWLSINEIL 110

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 126

>gnl|CDD|239518 cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes

 Score = 36.7 bits (86), Expect = 0.004
 Identities = 19/93 (20%), Positives = 32/93 (34%), Gaps = 22/93 (23%)

Query: 133 WSFPRGKKNKDEEDH---ACAIREVQEETGFDVSKLLNKDEFIEKIFGQ----QRVRLYI 185
            +FP GK   D  D    A A+RE +EE G     +        ++ G+         ++
Sbjct: 34  VAFPGGKV--DPGDEDPVATALREAEEEIGLPPDSV--------EVLGRLPPYYTRSGFV 83

Query: 186 I----AGVRDDTAFAPQTKKEISEIAWQRLDEL 214
           +      V            E++E+    L  L
Sbjct: 84  VTPVVGLVPPPLPLVLN-PDEVAEVFEVPLSFL 115

The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules. Length = 157

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	322
KOG2937	348	consensus Decapping enzyme complex, predicted pyro	100.0
PF05026	85	DCP2: Dcp2, box A domain; InterPro: IPR007722 This	99.97
cd03672	145	Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalyt	99.93
cd04670	127	Nudix_Hydrolase_12 Members of the Nudix hydrolase	99.79
cd04680	120	Nudix_Hydrolase_21 Members of the Nudix hydrolase	99.77
cd04678	129	Nudix_Hydrolase_19 Members of the Nudix hydrolase	99.76
cd04691	117	Nudix_Hydrolase_32 Members of the Nudix hydrolase	99.76
cd04700	142	DR1025_like DR1025 from Deinococcus radiodurans, a	99.76
cd04679	125	Nudix_Hydrolase_20 Members of the Nudix hydrolase	99.76
cd04671	123	Nudix_Hydrolase_13 Members of the Nudix hydrolase	99.76
cd03424	137	ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase)	99.76
cd03671	147	Ap4A_hydrolase_plant_like Diadenosine tetraphospha	99.75
cd03673	131	Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hy	99.75
cd04683	120	Nudix_Hydrolase_24 Members of the Nudix hydrolase	99.75
PRK00241	256	nudC NADH pyrophosphatase; Reviewed	99.75
PLN02325	144	nudix hydrolase	99.74
PRK00714	156	RNA pyrophosphohydrolase; Reviewed	99.73
cd03675	134	Nudix_Hydrolase_2 Contains a crystal structure of	99.73
cd03674	138	Nudix_Hydrolase_1 Members of the Nudix hydrolase s	99.73
cd04666	122	Nudix_Hydrolase_9 Members of the Nudix hydrolase s	99.73
cd04669	121	Nudix_Hydrolase_11 Members of the Nudix hydrolase	99.73
cd03430	144	GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mann	99.73
cd04696	125	Nudix_Hydrolase_37 Members of the Nudix hydrolase	99.73
PRK15434	159	GDP-mannose mannosyl hydrolase NudD; Provisional	99.73
cd04681	130	Nudix_Hydrolase_22 Members of the Nudix hydrolase	99.72
cd04684	128	Nudix_Hydrolase_25 Contains a crystal structure of	99.72
cd04677	132	Nudix_Hydrolase_18 Members of the Nudix hydrolase	99.72
cd04689	125	Nudix_Hydrolase_30 Members of the Nudix hydrolase	99.72
cd04687	128	Nudix_Hydrolase_28 Members of the Nudix hydrolase	99.72
PRK11762	185	nudE adenosine nucleotide hydrolase NudE; Provisio	99.72
cd04672	123	Nudix_Hydrolase_14 Members of the Nudix hydrolase	99.72
cd04673	122	Nudix_Hydrolase_15 Members of the Nudix hydrolase	99.72
cd04511	130	Nudix_Hydrolase_4 Members of the Nudix hydrolase s	99.72
cd04676	129	Nudix_Hydrolase_17 Members of the Nudix hydrolase	99.71
COG1051	145	ADP-ribose pyrophosphatase [Nucleotide transport a	99.71
PRK10729	202	nudF ADP-ribose pyrophosphatase NudF; Provisional	99.71
cd04688	126	Nudix_Hydrolase_29 Members of the Nudix hydrolase	99.71
PRK09438	148	nudB dihydroneopterin triphosphate pyrophosphatase	99.71
cd04682	122	Nudix_Hydrolase_23 Members of the Nudix hydrolase	99.7
cd03427	137	MTH1 MutT homolog-1 (MTH1) is a member of the Nudi	99.7
cd04690	118	Nudix_Hydrolase_31 Members of the Nudix hydrolase	99.7
cd03429	131	NADH_pyrophosphatase NADH pyrophosphatase, a membe	99.7
cd04667	112	Nudix_Hydrolase_10 Members of the Nudix hydrolase	99.69
PF00293	134	NUDIX: NUDIX domain; InterPro: IPR000086 The gener	99.68
TIGR00052	185	nudix-type nucleoside diphosphatase, YffH/AdpP fam	99.68
PRK15472	141	nucleoside triphosphatase NudI; Provisional	99.68
cd04693	127	Nudix_Hydrolase_34 Members of the Nudix hydrolase	99.68
PRK15009	191	GDP-mannose pyrophosphatase NudK; Provisional	99.68
cd04686	131	Nudix_Hydrolase_27 Members of the Nudix hydrolase	99.67
cd04697	126	Nudix_Hydrolase_38 Members of the Nudix hydrolase	99.67
cd03428	130	Ap4A_hydrolase_human_like Diadenosine tetraphospha	99.67
cd04699	129	Nudix_Hydrolase_39 Members of the Nudix hydrolase	99.67
cd03426	157	CoAse Coenzyme A pyrophosphatase (CoAse), a member	99.67
PRK15393	180	NUDIX hydrolase YfcD; Provisional	99.66
cd04664	129	Nudix_Hydrolase_7 Members of the Nudix hydrolase s	99.66
cd04695	131	Nudix_Hydrolase_36 Members of the Nudix hydrolase	99.65
PRK10546	135	pyrimidine (deoxy)nucleoside triphosphate pyrophos	99.65
cd04661	132	MRP_L46 Mitochondrial ribosomal protein L46 (MRP L	99.62
PRK10776	129	nucleoside triphosphate pyrophosphohydrolase; Prov	99.62
cd02885	165	IPP_Isomerase Isopentenyl diphosphate (IPP) isomer	99.61
cd03425	124	MutT_pyrophosphohydrolase The MutT pyrophosphohydr	99.61
cd04692	144	Nudix_Hydrolase_33 Members of the Nudix hydrolase	99.61
TIGR00586	128	mutt mutator mutT protein. All proteins in this fa	99.59
cd04694	143	Nudix_Hydrolase_35 Members of the Nudix hydrolase	99.58
cd02883	123	Nudix_Hydrolase Nudix hydrolase is a superfamily o	99.58
PRK05379	340	bifunctional nicotinamide mononucleotide adenylylt	99.57
PRK03759	184	isopentenyl-diphosphate delta-isomerase; Provision	99.57
cd04665	118	Nudix_Hydrolase_8 Members of the Nudix hydrolase s	99.56
cd04685	133	Nudix_Hydrolase_26 Members of the Nudix hydrolase	99.53
TIGR02705	156	nudix_YtkD nucleoside triphosphatase YtkD. The fun	99.53
cd04674	118	Nudix_Hydrolase_16 Members of the Nudix hydrolase	99.51
PRK10707	190	putative NUDIX hydrolase; Provisional	99.51
TIGR02150	158	IPP_isom_1 isopentenyl-diphosphate delta-isomerase	99.51
cd04662	126	Nudix_Hydrolase_5 Members of the Nudix hydrolase s	99.5
COG2816	279	NPY1 NTP pyrophosphohydrolases containing a Zn-fin	99.48
cd03676	180	Nudix_hydrolase_3 Members of the Nudix hydrolase s	99.45
PRK08999	312	hypothetical protein; Provisional	99.44
cd04663	126	Nudix_Hydrolase_6 Members of the Nudix hydrolase s	99.43
PLN03143	291	nudix hydrolase; Provisional	99.41
PLN02709	222	nudix hydrolase	99.4
COG0494	161	MutT NTP pyrophosphohydrolases including oxidative	99.32
cd03670	186	ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase)	99.32
KOG2839	145	consensus Diadenosine and diphosphoinositol polyph	99.32
KOG3084	345	consensus NADH pyrophosphatase I of the Nudix fami	99.27
KOG3041	225	consensus Nucleoside diphosphate-sugar hydrolase o	99.14
PLN02552	247	isopentenyl-diphosphate delta-isomerase	99.13
PLN02791	770	Nudix hydrolase homolog	99.08
KOG3069	246	consensus Peroxisomal NUDIX hydrolase [Replication	98.96
KOG2937	348	consensus Decapping enzyme complex, predicted pyro	98.82
KOG0648	295	consensus Predicted NUDIX hydrolase FGF-2 and rela	98.78
cd03431	118	DNA_Glycosylase_C DNA glycosylase (MutY in bacteri	98.75
COG4119	161	Predicted NTP pyrophosphohydrolase [DNA replicatio	98.63
PRK10880	350	adenine DNA glycosylase; Provisional	98.29
PF14815	114	NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3	98.15
COG1443	185	Idi Isopentenyldiphosphate isomerase [Lipid metabo	98.07
PLN02839	372	nudix hydrolase	97.98
TIGR01084	275	mutY A/G-specific adenine glycosylase. This equiva	97.42
KOG4432	405	consensus Uncharacterized NUDIX family hydrolase [	97.36
KOG4195	275	consensus Transient receptor potential-related cha	97.2
COG4112	203	Predicted phosphoesterase (MutT family) [General f	97.07
COG1194	342	MutY A/G-specific DNA glycosylase [DNA replication	96.93
PRK13910	289	DNA glycosylase MutY; Provisional	96.85
KOG4432	405	consensus Uncharacterized NUDIX family hydrolase [	96.68
PF13869	188	NUDIX_2: Nucleotide hydrolase; PDB: 3MDG_B 2J8Q_B	96.63
KOG0142	225	consensus Isopentenyl pyrophosphate:dimethylallyl	94.04
KOG1689	221	consensus mRNA cleavage factor I subunit [RNA proc	92.59
KOG4548	263	consensus Mitochondrial ribosomal protein L17 [Tra	91.89
PF14443	126	DBC1: DBC1	84.22

>KOG2937 consensus Decapping enzyme complex, predicted pyrophosphatase DCP2 [RNA processing and modification]

Probab=100.00  E-value=1.8e-43  Score=324.03  Aligned_cols=293  Identities=45%  Similarity=0.692  Sum_probs=239.3

Q ss_pred             CCCCchhHHHhhhhhhhccCChhhhhchHHHHHHHhhhheeeeeCCccCCCCCCcchHHHHHHHHhCCCCcccccccchh
Q 020742           15 GGLPPQELLDDLCSRFVLNVPQEDQQSFERILFLVEYAHWFYEDNSVENNPSLKSFTLKEFTSLMFNSCDVLRPYVAHID   94 (322)
Q Consensus        15 ~~~~~~~~l~dl~~Rfi~n~p~~~~~~~~rl~f~ie~a~w~y~d~~~~~~p~l~~~~l~~f~~~l~~~~~~l~~~~~~~~   94 (322)
                      ...++.++|||||+|||+|+|.|+++++||+||+||+|||||+||.....|++              .|+.++||...++
T Consensus         4 ~~~~~~~~L~dl~~rfi~n~p~e~q~S~Er~~f~ve~a~w~y~d~~~~ndpsl--------------~c~~~~~~~~~~~   69 (348)
T KOG2937|consen    4 NNTSSDRILDDLLSRFILNCPNEDQSSVERPLFSVEKALWFYEDFINKNDPSL--------------QCPLLWPWKNEKD   69 (348)
T ss_pred             ccchHHHHHHHHHHHHHhcCChhhhhhhhcchHHHHHHHHHHHHHHhcCCccc--------------CCccccchhhHHH
Confidence            44667899999999999999999999999999999999999999995555544              8999999999999


Q ss_pred             HHHhhhcCCcccccEEEEEEEeCCCCEEEEEEeeCCCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeeeeec
Q 020742           95 DIFKDFTSYKVRVPVTGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEK  174 (322)
Q Consensus        95 ~~~~~~~~y~~~v~v~g~Iv~~~~~~kvLLvrr~~~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~~~~  174 (322)
                      +.|..|..|+.++|+.|++++++...++|||+++.+..|.||.|++.++|+..+||+|||.||||.+....+.-..+++.
T Consensus        70 e~~~~f~~yk~~iPv~ga~ild~~~sr~llv~g~qa~sw~fprgK~~kdesd~~caiReV~eetgfD~skql~~~e~Ie~  149 (348)
T KOG2937|consen   70 EAFVDFAPYKARIPVRGAIILDEKRSRCLLVKGWQASSWSFPRGKISKDESDSDCAIREVTEETGFDYSKQLQDNEGIET  149 (348)
T ss_pred             HHHHhhccccCCCCCchHhhhhhhhhhhheeeceecccccccCccccccchhhhcchhcccchhhcCHHHHhccccCccc
Confidence            99999999999999999999999988999999999777999999999999999999999999999999987776777888


Q ss_pred             ccCeEEEEEEEEEeecCCCCCCCCCccceeeEEEEecccccccCCCccchhhhh-hhhhhhhhhHHHHHHHHHhcCCCCC
Q 020742          175 IFGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPASDDVISHGVTG-LKLYMVAPFLASLKKWISAHKPSIA  253 (322)
Q Consensus       175 ~~~~~~~~~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~~~~~~~~~~~~-~~~~~v~pf~~~L~~wi~~~~~~~~  253 (322)
                      .+.++.+++|++.++..++.+.+....|++.+.|+.++++....+....++... .+.||+.|+++.++.|+.+....+.
T Consensus       150 nI~dq~~~~fIi~gvs~d~~f~~~v~~eis~ihW~~l~~l~~t~~~s~~k~~~~~dk~~~~~~~l~vlkk~~~k~~~~va  229 (348)
T KOG2937|consen  150 NIRDQLVRLFIINGVSEDTNFNPRVRKEISKIHWHYLDHLVPTDKKSGPKGVKSRDKNYMVCPFLRVLKKWILKADEVVA  229 (348)
T ss_pred             chhhceeeeeeeccceeeeecchhhhccccceeeeehhhhcccccccCCCccccchhhcccchHHHHHHHHHHhccchhh
Confidence            888999999999999999999999999999999999999955333333344443 5789999999999999998877666


Q ss_pred             CCCCCCCCccceeeccCCCCCccceeecccc----------------------------ccCCC----------------
Q 020742          254 PKHDMPLKGVCVWKAKNNSIGSNTIALESQL----------------------------TKVAS----------------  289 (322)
Q Consensus       254 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~----------------------------~~~~~----------------  289 (322)
                      ..+..+....++|.+-.+..+..+..++++.                            ..|+.                
T Consensus       230 k~~e~~~~~~tl~~~~t~v~~d~~~~aqS~~~~~e~~~~~~~k~sr~e~~r~~si~s~~~e~~f~~~s~~~~n~k~s~f~  309 (348)
T KOG2937|consen  230 KFPEKKSTVPTLGAALTDVEMDHVVTAQSYFAKPENWTFPKGKISRGEKPRDASIRSTFEEPGFPFGSYPEKNKKFSRFI  309 (348)
T ss_pred             cCcccCccchhHHhhhhccccccceeecccccccccccCcccccccCCccccchhhhcCCCcCCcccccchhcccccccc
Confidence            5555555555555444332222221111111                            11111                


Q ss_pred             ------CCCCCCCCCCCCccccccCHHHHHHHHHhccC
Q 020742          290 ------DSQPPDTGPGKSFRNFRFDTAAILQAMEAGFC  321 (322)
Q Consensus       290 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (322)
                            ..+-....++.+|-++++....|||.++.|++
T Consensus       310 ~nt~~~l~~i~n~~~~~s~~~~kk~qs~~lq~~~~~n~  347 (348)
T KOG2937|consen  310 NNTKVRLYHIKNSKKPDSNVSSKKNQSQILQRIRSGNS  347 (348)
T ss_pred             cCCcceeeeccccCCCccccccccchhhHHHhhhhccC
Confidence                  22333456677888999999999999999987

>PF05026 DCP2: Dcp2, box A domain; InterPro: IPR007722 This presumed domain is always found to the N-terminal side of the NUDIX hydrolase domain IPR000086 from INTERPRO

Probab=99.97  E-value=8.1e-33  Score=211.08  Aligned_cols=85  Identities=54%  Similarity=1.027  Sum_probs=75.6

Q ss_pred             hhHHHhhhhhhhccCChhhhhchHHHHHHHhhhheeeeeCCccCCCCCCcchHHHHHHHHhCCCCcccccccchhHHHhh
Q 020742           20 QELLDDLCSRFVLNVPQEDQQSFERILFLVEYAHWFYEDNSVENNPSLKSFTLKEFTSLMFNSCDVLRPYVAHIDDIFKD   99 (322)
Q Consensus        20 ~~~l~dl~~Rfi~n~p~~~~~~~~rl~f~ie~a~w~y~d~~~~~~p~l~~~~l~~f~~~l~~~~~~l~~~~~~~~~~~~~   99 (322)
                      ++||||||+|||+|+|++|+++++|||||||+|||||+||+++++|+||++++++|+..|+++|+.++++..++++++++
T Consensus         1 ~~iLdDL~~RFI~N~P~eel~~~eRl~FqiE~AhWfY~Df~~~~~p~Lp~~~lk~F~~~if~~cp~L~~~~~~~~~~~~~   80 (85)
T PF05026_consen    1 EEILDDLCSRFILNLPEEELSSFERLCFQIEEAHWFYEDFYREQNPSLPSMSLKEFAKQIFQHCPLLRPFTGNHDEALKK   80 (85)
T ss_dssp             -HHHHHHHHHHTTTS-CCCST-HHHHHHHHHHHHHHHHHTTTTTTTTS----HHHHHHHHHTT-GHHCCCCCHCHHHHHH
T ss_pred             CcHHHHHHHHHHhcCCHHHHccHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHCHhHHHhhccHHHHHHH
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCc
Q 020742          100 FTSYK  104 (322)
Q Consensus       100 ~~~y~  104 (322)
                      |++||
T Consensus        81 f~~YK   85 (85)
T PF05026_consen   81 FKKYK   85 (85)
T ss_dssp             HHHHS
T ss_pred             HHccC
Confidence            99986

This domain appears to be specific to mRNA decapping protein 2 P53550 from SWISSPROT and its close homologues. This region has been termed Box A [].; GO: 0003723 RNA binding, 0016787 hydrolase activity, 0030145 manganese ion binding; PDB: 2QKM_H 2A6T_B 2QKL_B.

>cd03672 Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalytic subunit, and Dcp1p are the two components of the decapping enzyme complex

Probab=99.93  E-value=1.5e-25  Score=189.74  Aligned_cols=144  Identities=53%  Similarity=0.987  Sum_probs=110.5

Q ss_pred             ccEEEEEEEeCCCCEEEEEEeeCCCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeeeeecccCeEEEEEEEE
Q 020742          107 VPVTGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQQRVRLYII  186 (322)
Q Consensus       107 v~v~g~Iv~~~~~~kvLLvrr~~~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~~~~~~~~~~~~~y~~  186 (322)
                      +|++|+|++++++++|||+|++..+.|+||||+++.|||+.+||+||++||||+++..+.....+.........+++|++
T Consensus         1 ~p~~gaii~~~~~~~vLLvr~~~~~~W~lPGG~ve~gEs~~~AA~REl~EETGl~v~~~~~~~~~~~~~~~~~~~~~f~~   80 (145)
T cd03672           1 IPVYGAIILNEDLDKVLLVKGWKSKSWSFPKGKINKDEDDHDCAIREVYEETGFDISKYIDKDDYIELIIRGQNVKLYIV   80 (145)
T ss_pred             CCeeEEEEEeCCCCEEEEEEecCCCCEECCCccCCCCcCHHHHHHHHHHHhhCccceeccccceeeecccCCcEEEEEEE
Confidence            57899999998656999999988779999999999999999999999999999998764433334333344456778877


Q ss_pred             EeecCCCCCCCCCccceeeEEEEecccccccCCCccchhhhhhhhhhhhhhHHHHHHHHHhcCCC
Q 020742          187 AGVRDDTAFAPQTKKEISEIAWQRLDELQPASDDVISHGVTGLKLYMVAPFLASLKKWISAHKPS  251 (322)
Q Consensus       187 ~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~~~~~~~~~~~~~~~~~v~pf~~~L~~wi~~~~~~  251 (322)
                      ..........+...+|+.++.|+++++++++.... ..++....|.++.||+.+|++|+.+++.+
T Consensus        81 ~~~~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (145)
T cd03672          81 PGVPEDTPFEPKTRKEISKIEWFDIKDLPTKKNKK-IPGLNSNKFFMVIPFIKPLKKWINRQKGK  144 (145)
T ss_pred             ecCCCCcccCcCChhhhheEEEeeHHHhhhhhhhc-cccccccceEEEhHHHHHHHHHHHHhhcC
Confidence            66554433334445789999999999999853321 12334446789999999999999998764

Decapping is a key step in both general and nonsense-mediated 5'-3' mRNA-decay pathways. Dcp2p contains an all-alpha helical N-terminal domain and a C-terminal domain which has the Nudix fold. While decapping is not dependent on the N-terminus of Dcp2p, it does affect its efficiency. Dcp1p binds the N-terminal domain of Dcp2p stimulating the decapping activity of Dcp2p. Decapping permits the degradation of the transcript and is a site of numerous control inputs. It is responsible for nonsense-mediated decay as well as AU-rich element (ARE)-mediated decay. In addition, it may also play a role in the levels of mRNA. Enzymes belonging to the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V).

>cd04670 Nudix_Hydrolase_12 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.79  E-value=1.4e-18  Score=142.86  Aligned_cols=107  Identities=23%  Similarity=0.347  Sum_probs=74.9

Q ss_pred             cEEEEEEEeCCCCEEEEEEeeC--CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeeeeecccCeEEEEEEE
Q 020742          108 PVTGAIILDETYERCILVKGWK--GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQQRVRLYI  185 (322)
Q Consensus       108 ~v~g~Iv~~~~~~kvLLvrr~~--~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~~~~~~~~~~~~~y~  185 (322)
                      ..++++|++++ ++|||++++.  .+.|.+|||+++.|||+.+||+||++||||+.+.....+..............+|+
T Consensus         3 ~~~~~~v~~~~-~~vLl~~r~~~~~~~w~~PGG~ve~gEt~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~   81 (127)
T cd04670           3 VGVGGLVLNEK-NEVLVVQERNKTPNGWKLPGGLVDPGEDIFDGAVREVLEETGIDTEFVSVVGFRHAHPGAFGKSDLYF   81 (127)
T ss_pred             eEEEEEEEcCC-CeEEEEEccCCCCCcEECCCccCCCCCCHHHHHHHHHHHHHCCCcceeEEEEEEecCCCCcCceeEEE
Confidence            45677888776 4999999877  79999999999999999999999999999999875443332211111112223333


Q ss_pred             EEeecC-CCCCCCCCccceeeEEEEecccccc
Q 020742          186 IAGVRD-DTAFAPQTKKEISEIAWQRLDELQP  216 (322)
Q Consensus       186 ~~~~~~-~~~~~~~~~~Ei~~~~Wv~ldeL~~  216 (322)
                      ++.+.. .... ..+.+|+.++.|++++++.+
T Consensus        82 ~~~~~~~~~~~-~~~~~E~~~~~w~~~~el~~  112 (127)
T cd04670          82 ICRLKPLSFDI-NFDTSEIAAAKWMPLEEYIS  112 (127)
T ss_pred             EEEEccCcCcC-CCChhhhheeEEEcHHHHhc
Confidence            333332 2121 23467888999999999976

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04680 Nudix_Hydrolase_21 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.77  E-value=4.4e-18  Score=138.00  Aligned_cols=105  Identities=22%  Similarity=0.251  Sum_probs=80.0

Q ss_pred             EEEEEEEeCCCCEEEEEEeeCCCcEEcccccCCCCCCHHHHHHHHHHHHhCCccc-ceeeeeeeeecc-cCeEEEEEEEE
Q 020742          109 VTGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVS-KLLNKDEFIEKI-FGQQRVRLYII  186 (322)
Q Consensus       109 v~g~Iv~~~~~~kvLLvrr~~~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~-~l~~~~~~~~~~-~~~~~~~~y~~  186 (322)
                      .+.++++++++ ++||+++...+.|.+|||+++.||++.+||+||++||||+.+. ....+..+.... .....+.+|.+
T Consensus         2 ~~~~~i~~~~~-~vLL~~r~~~~~w~~PgG~ve~gEt~~~aa~REl~EEtG~~~~~~~~~~~~~~~~~~~~~~~~~~f~~   80 (120)
T cd04680           2 GARAVVTDADG-RVLLVRHTYGPGWYLPGGGLERGETFAEAARRELLEELGIRLAVVAELLGVYYHSASGSWDHVIVFRA   80 (120)
T ss_pred             ceEEEEECCCC-eEEEEEECCCCcEeCCCCcCCCCCCHHHHHHHHHHHHHCCccccccceEEEEecCCCCCceEEEEEEe
Confidence            46778888764 9999998776799999999999999999999999999999998 655544433221 23455666766


Q ss_pred             EeecCCCCCCCCCccceeeEEEEeccccccc
Q 020742          187 AGVRDDTAFAPQTKKEISEIAWQRLDELQPA  217 (322)
Q Consensus       187 ~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~  217 (322)
                      .......   ....+|+.++.|++++++++.
T Consensus        81 ~~~~~~~---~~~~~E~~~~~w~~~~~l~~~  108 (120)
T cd04680          81 RADTQPV---IRPSHEISEARFFPPDALPEP  108 (120)
T ss_pred             cccCCCc---cCCcccEEEEEEECHHHCccc
Confidence            5443321   335688999999999999873

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04678 Nudix_Hydrolase_19 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.76  E-value=1.3e-17  Score=137.39  Aligned_cols=109  Identities=23%  Similarity=0.351  Sum_probs=79.6

Q ss_pred             cEEEEEEEeCCCCEEEEEEeeC---CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeeeee--cccCeEEEE
Q 020742          108 PVTGAIILDETYERCILVKGWK---GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIE--KIFGQQRVR  182 (322)
Q Consensus       108 ~v~g~Iv~~~~~~kvLLvrr~~---~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~~~--~~~~~~~~~  182 (322)
                      .++++||+++++ ++||++|..   ++.|.+|||+++.||++.+||+||++||||+++..+..+..+..  .....+.+.
T Consensus         3 ~~v~~ii~~~~~-~iLl~~r~~~~~~~~w~~PGG~ve~gEt~~~Aa~REl~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~   81 (129)
T cd04678           3 VGVGVFVLNPKG-KVLLGKRKGSHGAGTWALPGGHLEFGESFEECAAREVLEETGLHIENVQFLTVTNDVFEEEGKHYVT   81 (129)
T ss_pred             eEEEEEEECCCC-eEEEEeccCCCCCCeEECCcccccCCCCHHHHHHHHHHHHhCCcccceEEEEEEeEEeCCCCcEEEE
Confidence            356788888764 999999874   78999999999999999999999999999999877555443322  122334555


Q ss_pred             EEEEEeecCCC-CCCCCCccceeeEEEEeccccccc
Q 020742          183 LYIIAGVRDDT-AFAPQTKKEISEIAWQRLDELQPA  217 (322)
Q Consensus       183 ~y~~~~~~~~~-~~~~~~~~Ei~~~~Wv~ldeL~~~  217 (322)
                      +|+.+...... .....+.+|+.+++|++++++..+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~  117 (129)
T cd04678          82 IFVKAEVDDGEAEPNKMEPEKCEGWEWFDWEELPSV  117 (129)
T ss_pred             EEEEEEeCCCCcccCCCCCceeCceEEeCHHHCCCc
Confidence            55555554432 111114567889999999999974

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04691 Nudix_Hydrolase_32 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.76  E-value=5.9e-18  Score=137.79  Aligned_cols=101  Identities=18%  Similarity=0.300  Sum_probs=76.1

Q ss_pred             EEEEEEeCCCCEEEEEEeeC-----CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeeeeecccCeEEEEEE
Q 020742          110 TGAIILDETYERCILVKGWK-----GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQQRVRLY  184 (322)
Q Consensus       110 ~g~Iv~~~~~~kvLLvrr~~-----~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~~~~~~~~~~~~~y  184 (322)
                      ++++++++  ++|||+||.+     .+.|+||||+++.||++.+||+||++||||+++..+..+..+.........+++|
T Consensus         3 v~~vi~~~--~~vLL~rR~~~~~~~~g~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~   80 (117)
T cd04691           3 VVGVLFSD--DKVLLERRSLTKNADPGKLNIPGGHIEAGESQEEALLREVQEELGVDPLSYTYLCSLYHPTSELQLLHYY   80 (117)
T ss_pred             EEEEEEEC--CEEEEEEeCCCCCCCCCeEECcceeecCCCCHHHHHHHHHHHHHCCCcccceEEEEEeccCCCeEEEEEE
Confidence            45555555  3999999864     5799999999999999999999999999999976665555544332234556667


Q ss_pred             EEEeecCCCCCCCCCccceeeEEEEeccccccc
Q 020742          185 IIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  217 (322)
Q Consensus       185 ~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~  217 (322)
                      .+....+.    + ..+|+.++.|+++++++..
T Consensus        81 ~~~~~~~~----~-~~~E~~~~~W~~~~~l~~~  108 (117)
T cd04691          81 VVTFWQGE----I-PAQEAAEVHWMTANDIVLA  108 (117)
T ss_pred             EEEEecCC----C-CcccccccEEcCHHHcchh
Confidence            76554432    2 2378899999999999874

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04700 DR1025_like DR1025 from Deinococcus radiodurans, a member of the Nudix hydrolase superfamily, show nucleoside triphosphatase and dinucleoside polyphosphate pyrophosphatase activities

Probab=99.76  E-value=8.1e-18  Score=141.73  Aligned_cols=113  Identities=23%  Similarity=0.358  Sum_probs=82.9

Q ss_pred             CCcccccEEEEEEEeCCCCEEEEEEeeC---CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeeeeec-ccC
Q 020742          102 SYKVRVPVTGAIILDETYERCILVKGWK---GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEK-IFG  177 (322)
Q Consensus       102 ~y~~~v~v~g~Iv~~~~~~kvLLvrr~~---~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~~~~-~~~  177 (322)
                      .+.....+++++|++.++ ++||+++..   .+.|+||||++++||++.+||+||++||||+++.....+..+... ..+
T Consensus         8 ~~~~~~~av~~vv~~~~~-~vLL~~r~~~~~~~~w~lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~   86 (142)
T cd04700           8 HVEVEARAAGAVILNERN-DVLLVQEKGGPKKGLWHIPSGAVEDGEFPQDAAVREACEETGLRVRPVKFLGTYLGRFDDG   86 (142)
T ss_pred             CcceeeeeEEEEEEeCCC-cEEEEEEcCCCCCCeEECCceecCCCCCHHHHHHHHHHHhhCceeeccEEEEEEEEEcCCC
Confidence            344456788889998764 899998764   589999999999999999999999999999998876555544321 112


Q ss_pred             -eEEEEEEEEEeecCCCCCCCCCccceeeEEEEeccccccc
Q 020742          178 -QQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  217 (322)
Q Consensus       178 -~~~~~~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~  217 (322)
                       ....++|++......  ..+...+|+.++.|++++++.++
T Consensus        87 ~~~~~~~f~~~~~~~~--~~~~~~~E~~~~~w~~~~el~~~  125 (142)
T cd04700          87 VLVLRHVWLAEPEGQT--LAPKFTDEIAEASFFSREDVAQL  125 (142)
T ss_pred             cEEEEEEEEEEecCCc--cccCCCCCEEEEEEECHHHhhhc
Confidence             233455655443322  22334579999999999999985

Like other enzymes belonging to this superfamily, it requires a divalent cation, in this case Mg2+, for its activity. It also contains a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. In general, substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is us

>cd04679 Nudix_Hydrolase_20 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.76  E-value=9.2e-18  Score=137.69  Aligned_cols=106  Identities=23%  Similarity=0.325  Sum_probs=76.3

Q ss_pred             cEEEEEEEeCCCCEEEEEEeeC---CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeeee--ecc-cCeEEE
Q 020742          108 PVTGAIILDETYERCILVKGWK---GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFI--EKI-FGQQRV  181 (322)
Q Consensus       108 ~v~g~Iv~~~~~~kvLLvrr~~---~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~~--~~~-~~~~~~  181 (322)
                      .+|+++|++.++ +|||++|.+   .+.|.+|||+++.||++.+||+||++||||+++.....+....  ... ..+...
T Consensus         3 ~~~~~~i~~~~~-~vLL~~r~~~~~~~~w~lPgG~ve~gEt~~eaa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~   81 (125)
T cd04679           3 VGCGAAILRDDG-KLLLVKRLRAPEAGHWGIPGGKVDWMEAVEDAVVREIEEETGLSIHSTRLLCVVDHIIEEPPQHWVA   81 (125)
T ss_pred             eEEEEEEECCCC-EEEEEEecCCCCCCeEeCCeeeccCCCCHHHHHHHHHHHHHCCCcccceEEEEEeecccCCCCeEEE
Confidence            457788887764 999999875   5899999999999999999999999999999987644433221  111 222333


Q ss_pred             EEEEEEeecCCCCCCCCCccceeeEEEEecccccc
Q 020742          182 RLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQP  216 (322)
Q Consensus       182 ~~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~  216 (322)
                      .+|++....+. . ...+.+|+.++.|+++++++.
T Consensus        82 ~~f~~~~~~~~-~-~~~~~~E~~~~~W~~~~~l~~  114 (125)
T cd04679          82 PVYLAENFSGE-P-RLMEPDKLLELGWFALDALPQ  114 (125)
T ss_pred             EEEEEeecCCc-c-ccCCCccccEEEEeCHHHCCc
Confidence            44555443332 1 223457899999999999986

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04671 Nudix_Hydrolase_13 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.76  E-value=9.2e-18  Score=138.11  Aligned_cols=105  Identities=22%  Similarity=0.285  Sum_probs=76.6

Q ss_pred             EEEEEEEeCCCCEEEEEEeeC---CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeeeeecccCeEEEEEEE
Q 020742          109 VTGAIILDETYERCILVKGWK---GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQQRVRLYI  185 (322)
Q Consensus       109 v~g~Iv~~~~~~kvLLvrr~~---~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~~~~~~~~~~~~~y~  185 (322)
                      ++++++++.+ ++|||+++.+   .+.|.+|||+++.||++.+||+||++||||+++.....+... .. .......+|.
T Consensus         2 ~~~~vv~~~~-~~vLl~~r~~~~~~~~w~lPgG~ve~gEt~~~aa~REl~EEtG~~~~~~~~~~~~-~~-~~~~~~~~f~   78 (123)
T cd04671           2 IVAAVILNNQ-GEVLLIQEAKRSCRGKWYLPAGRMEPGETIEEAVKREVKEETGLDCEPTTLLSVE-EQ-GGSWFRFVFT   78 (123)
T ss_pred             EEEEEEEcCC-CEEEEEEecCCCCCCeEECceeecCCCCCHHHHHHHHHHHHHCCeeecceEEEEE-cc-CCeEEEEEEE
Confidence            5778888876 4999999875   689999999999999999999999999999999765443322 11 2334455565


Q ss_pred             EEeecCCCCCCCCCccceeeEEEEecccccc
Q 020742          186 IAGVRDDTAFAPQTKKEISEIAWQRLDELQP  216 (322)
Q Consensus       186 ~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~  216 (322)
                      +....+.......+..|+.+++|+++++++.
T Consensus        79 a~~~~g~~~~~~~~~~e~~~~~W~~~~el~~  109 (123)
T cd04671          79 GNITGGDLKTEKEADSESLQARWYSNKDLPL  109 (123)
T ss_pred             EEEeCCeEccCCCCCcceEEEEEECHHHCCC
Confidence            5544433222223456788999999999954

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03424 ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate

Probab=99.76  E-value=1e-17  Score=139.45  Aligned_cols=109  Identities=22%  Similarity=0.356  Sum_probs=82.7

Q ss_pred             ccEEEEEEEeCCCCEEEEEEeeC----CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeeeee-cccCeEEE
Q 020742          107 VPVTGAIILDETYERCILVKGWK----GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIE-KIFGQQRV  181 (322)
Q Consensus       107 v~v~g~Iv~~~~~~kvLLvrr~~----~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~~~-~~~~~~~~  181 (322)
                      .+++++++++++ +++||+++.+    ++.|++|||+++.||++.+||+||++||||+++..+..+..+.. .......+
T Consensus         2 ~~~v~v~~~~~~-~~iLl~~~~~~~~~~~~w~~PgG~ve~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~   80 (137)
T cd03424           2 PDAVAVLPYDDD-GKVVLVRQYRPPVGGWLLELPAGLIDPGEDPEEAARRELEEETGYEAGDLEKLGSFYPSPGFSDERI   80 (137)
T ss_pred             CCEEEEEEEcCC-CeEEEEEeeecCCCCEEEEeCCccCCCCCCHHHHHHHHHHHHHCCCccceEEEeeEecCCcccCccE
Confidence            357788888887 4999998765    46899999999999999999999999999999987666665433 22334456


Q ss_pred             EEEEEEeecCCCCCCCCCccceeeEEEEeccccccc
Q 020742          182 RLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  217 (322)
Q Consensus       182 ~~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~  217 (322)
                      .+|++......... ...+.|+.+++|++++++.++
T Consensus        81 ~~~~~~~~~~~~~~-~~~~~E~~~~~w~~~~el~~~  115 (137)
T cd03424          81 HLFLAEDLSPGEEG-LLDEGEDIEVVLVPLDEALEL  115 (137)
T ss_pred             EEEEEEcccccccC-CCCCCCeeEEEEecHHHHHHH
Confidence            67766544332111 234678999999999999874

Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirem

>cd03671 Ap4A_hydrolase_plant_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily

Probab=99.75  E-value=2.6e-17  Score=139.22  Aligned_cols=109  Identities=24%  Similarity=0.455  Sum_probs=78.3

Q ss_pred             cEEEEEEEeCCCCEEEEEEeeC-CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeee------eeecc-----
Q 020742          108 PVTGAIILDETYERCILVKGWK-GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDE------FIEKI-----  175 (322)
Q Consensus       108 ~v~g~Iv~~~~~~kvLLvrr~~-~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~------~~~~~-----  175 (322)
                      +++++|++++++ +|||++|.. .+.|.+|||+++.||++.+||+||++||||+++.....+..      |....     
T Consensus         4 ~~v~~ii~~~~~-~vLL~~r~~~~~~W~~PgG~~e~gE~~~~aA~REv~EEtGl~~~~~~~l~~~~~~~~y~~~~~~~~~   82 (147)
T cd03671           4 PNVGVVLFNEDG-KVFVGRRIDTPGAWQFPQGGIDEGEDPEQAALRELEEETGLDPDSVEIIAEIPDWLRYDLPPELKLK   82 (147)
T ss_pred             ceEEEEEEeCCC-EEEEEEEcCCCCCEECCcCCCCCCcCHHHHHHHHHHHHHCCCcCceEEEEEcCCeeEeeChhhhhcc
Confidence            578888888774 999999987 46999999999999999999999999999999765333322      11110     


Q ss_pred             -----cCeEEEEEEEEEeecCCCCCCCC--CccceeeEEEEeccccccc
Q 020742          176 -----FGQQRVRLYIIAGVRDDTAFAPQ--TKKEISEIAWQRLDELQPA  217 (322)
Q Consensus       176 -----~~~~~~~~y~~~~~~~~~~~~~~--~~~Ei~~~~Wv~ldeL~~~  217 (322)
                           ...+..++|++............  +.+|+.++.|+++++++++
T Consensus        83 ~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~E~~~~~W~~~~el~~~  131 (147)
T cd03671          83 IWGGRYRGQEQKWFLFRFTGDDSEIDLNAPEHPEFDEWRWVPLEELPDL  131 (147)
T ss_pred             ccCCcCCCEEEEEEEEEecCCCccccCCCCCCCCEeeEEeCCHHHHHHh
Confidence                 12344566655443322222222  3579999999999999974

Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one group (represented by this subfamily) and fungi/animals/archaea enzymes fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for the inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU where U is Ile, Leu, or Val), Ap4A hydrolase is structurally

>cd03673 Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily

Probab=99.75  E-value=7.6e-18  Score=138.41  Aligned_cols=108  Identities=23%  Similarity=0.407  Sum_probs=79.9

Q ss_pred             cEEEEEEEeCCC--CEEEEEEeeCCCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeeee--ecc---cCeEE
Q 020742          108 PVTGAIILDETY--ERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFI--EKI---FGQQR  180 (322)
Q Consensus       108 ~v~g~Iv~~~~~--~kvLLvrr~~~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~~--~~~---~~~~~  180 (322)
                      .++++|+++.+.  ++|||+++.+.+.|.||||+++.||++.+||.||++||||+++..+..+..+.  ...   .....
T Consensus         2 ~~a~~ii~~~~~~~~~vLl~~~~~~~~w~~PgG~v~~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~   81 (131)
T cd03673           2 LAAGGVVFRGSDGGIEVLLIHRPRGDDWSLPKGKLEPGETPPEAAVREVEEETGIRAEVGDPLGTIRYWFSSSGKRVHKT   81 (131)
T ss_pred             eeEEEEEEEccCCCeEEEEEEcCCCCcccCCCCccCCCCCHHHHHHHHHhhhhCCceEecceEEEEEEeccCCCCCcceE
Confidence            467888877642  49999999888899999999999999999999999999999987654444321  111   23445


Q ss_pred             EEEEEEEeecCCCCCCCCCccceeeEEEEeccccccc
Q 020742          181 VRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  217 (322)
Q Consensus       181 ~~~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~  217 (322)
                      +.+|.+.......  .....+|+.++.|++++++.++
T Consensus        82 ~~~~~~~~~~~~~--~~~~~~E~~~~~W~~~~el~~~  116 (131)
T cd03673          82 VHWWLMRALGGEF--TPQPDEEVDEVRWLPPDEARDR  116 (131)
T ss_pred             EEEEEEEEcCCCc--ccCCCCcEEEEEEcCHHHHHHH
Confidence            5666665443332  2225688999999999999873

Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site.

>cd04683 Nudix_Hydrolase_24 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.75  E-value=2.1e-17  Score=134.36  Aligned_cols=104  Identities=19%  Similarity=0.331  Sum_probs=73.7

Q ss_pred             EEEEEEeCCCCEEEEEEeeC----CCcEEcccccCCCCCCHHHHHHHHHHHHhCCccc--ceeeeeeeeec-ccCeEEEE
Q 020742          110 TGAIILDETYERCILVKGWK----GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVS--KLLNKDEFIEK-IFGQQRVR  182 (322)
Q Consensus       110 ~g~Iv~~~~~~kvLLvrr~~----~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~--~l~~~~~~~~~-~~~~~~~~  182 (322)
                      ++++|.+++  +|||+||.+    .+.|++|||+++.||++.+||+||++||||+.+.  .+..+..+... ....+.+.
T Consensus         3 v~~vi~~~~--~vLL~~r~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~v~~~~~~~~~~~~~~~~~~~~~~~   80 (120)
T cd04683           3 VYVLLRRDD--EVLLQRRANTGYMDGQWALPAGHLEKGEDAVTAAVREAREEIGVTLDPEDLRLAHTMHRRTEDIESRIG   80 (120)
T ss_pred             EEEEEEECC--EEEEEEccCCCCCCCeEeCCccccCCCCCHHHHHHHHHHHHHCCccChhheEEEEEEEecCCCCceEEE
Confidence            456666653  899999875    5799999999999999999999999999999886  44444433221 22234455


Q ss_pred             EEEEEeecCCCCCCCCCccceeeEEEEecccccc
Q 020742          183 LYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQP  216 (322)
Q Consensus       183 ~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~  216 (322)
                      +|+.+...... ......+|+.++.|+++++|+.
T Consensus        81 ~~f~~~~~~~~-~~~~~~~e~~~~~W~~~~~l~~  113 (120)
T cd04683          81 LFFTVRRWSGE-PRNCEPDKCAELRWFPLDALPD  113 (120)
T ss_pred             EEEEEEeecCc-cccCCCCcEeeEEEEchHHCcc
Confidence            55544432221 1223457889999999999987

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PRK00241 nudC NADH pyrophosphatase; Reviewed

Probab=99.75  E-value=1.3e-17  Score=153.60  Aligned_cols=165  Identities=18%  Similarity=0.170  Sum_probs=110.2

Q ss_pred             hhhccCChhhhhchHHHHHHHhhhheeeeeCCccCCCCCCcchHHHHHHHHhCCCCcccccccchhHHHhhhcCCccccc
Q 020742           29 RFVLNVPQEDQQSFERILFLVEYAHWFYEDNSVENNPSLKSFTLKEFTSLMFNSCDVLRPYVAHIDDIFKDFTSYKVRVP  108 (322)
Q Consensus        29 Rfi~n~p~~~~~~~~rl~f~ie~a~w~y~d~~~~~~p~l~~~~l~~f~~~l~~~~~~l~~~~~~~~~~~~~~~~y~~~v~  108 (322)
                      |-+..+|+++.....   .+.+..+|+....+|+++..--.. ...-....+..|.               ...|...-+
T Consensus        73 r~~~~~~~~~~~~~~---~a~~l~~w~~~~~fC~~CG~~~~~-~~~~~~~~C~~c~---------------~~~yp~~~p  133 (256)
T PRK00241         73 RQLLDLDDGLFQLLG---RAVQLAEFYRSHRFCGYCGHPMHP-SKTEWAMLCPHCR---------------ERYYPRIAP  133 (256)
T ss_pred             hhhccCCHHHHHHHH---HHHHHHHHhhcCccccccCCCCee-cCCceeEECCCCC---------------CEECCCCCC
Confidence            333567777655433   478889999998777764321111 0111111222232               245665566


Q ss_pred             EEEEEEEeCCCCEEEEEEeeC--CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeeeeecccCeEEEEEEEE
Q 020742          109 VTGAIILDETYERCILVKGWK--GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQQRVRLYII  186 (322)
Q Consensus       109 v~g~Iv~~~~~~kvLLvrr~~--~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~~~~~~~~~~~~~y~~  186 (322)
                      ++.++|.++  +++||+++.+  .+.|++|||+++.|||+++||+||++||||+++..+..+.... ..+.+..+..|.+
T Consensus       134 aViv~V~~~--~~iLL~rr~~~~~g~wslPgG~vE~GEs~eeAa~REv~EEtGl~v~~~~~~~s~~-~~~p~~lm~~f~a  210 (256)
T PRK00241        134 CIIVAVRRG--DEILLARHPRHRNGVYTVLAGFVEVGETLEQCVAREVMEESGIKVKNLRYVGSQP-WPFPHSLMLGFHA  210 (256)
T ss_pred             EEEEEEEeC--CEEEEEEccCCCCCcEeCcccCCCCCCCHHHHhhhhhhhccCceeeeeEEEEeEe-ecCCCeEEEEEEE
Confidence            666666655  4999999876  6899999999999999999999999999999998776665432 2334456666766


Q ss_pred             EeecCCCCCCCCCccceeeEEEEecccccccC
Q 020742          187 AGVRDDTAFAPQTKKEISEIAWQRLDELQPAS  218 (322)
Q Consensus       187 ~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~~  218 (322)
                      ....+.  . ..+.+|+.++.|+++++++.+.
T Consensus       211 ~~~~~~--~-~~~~~Ei~~a~W~~~del~~lp  239 (256)
T PRK00241        211 DYDSGE--I-VFDPKEIADAQWFRYDELPLLP  239 (256)
T ss_pred             EecCCc--c-cCCcccEEEEEEECHHHCcccC
Confidence            544332  2 2345799999999999998753

>PLN02325 nudix hydrolase

Probab=99.74  E-value=7e-17  Score=136.49  Aligned_cols=112  Identities=21%  Similarity=0.279  Sum_probs=76.6

Q ss_pred             CcccccEEEEEEEeCCCCEEEEEEeeC---CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeee--e--ecc
Q 020742          103 YKVRVPVTGAIILDETYERCILVKGWK---GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEF--I--EKI  175 (322)
Q Consensus       103 y~~~v~v~g~Iv~~~~~~kvLLvrr~~---~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~--~--~~~  175 (322)
                      |+.....++++|+++  ++|||+||..   .+.|.+|||+++.||++.+||+||++||||+++.....+..+  .  ...
T Consensus         5 ~~~p~~~v~~vi~~~--~~vLL~rr~~~~~~g~W~lPGG~ve~gEs~~~aa~REv~EEtGl~v~~~~~l~~~~~~~~~~~   82 (144)
T PLN02325          5 EPIPRVAVVVFLLKG--NSVLLGRRRSSIGDSTFALPGGHLEFGESFEECAAREVKEETGLEIEKIELLTVTNNVFLEEP   82 (144)
T ss_pred             CCCCeEEEEEEEEcC--CEEEEEEecCCCCCCeEECCceeCCCCCCHHHHHHHHHHHHHCCCCcceEEEEEecceeecCC
Confidence            333444556666665  3999999876   589999999999999999999999999999998765443321  1  112


Q ss_pred             cCeEEEEEEEEEeecCC-CCCCCCCccceeeEEEEecccccc
Q 020742          176 FGQQRVRLYIIAGVRDD-TAFAPQTKKEISEIAWQRLDELQP  216 (322)
Q Consensus       176 ~~~~~~~~y~~~~~~~~-~~~~~~~~~Ei~~~~Wv~ldeL~~  216 (322)
                      ...+.+.+|+.+..... ........+|+.+++|+++++|+.
T Consensus        83 ~~~~~i~~~f~~~~~~~~~~~~~~e~~e~~~~~W~~~d~Lp~  124 (144)
T PLN02325         83 KPSHYVTVFMRAVLADPSQVPQNLEPEKCYGWDWYEWDNLPE  124 (144)
T ss_pred             CCcEEEEEEEEEEECCCCCCCCcCCchhcCceEEEChHHCCh
Confidence            22344555554444322 111223345678899999999987

>PRK00714 RNA pyrophosphohydrolase; Reviewed

Probab=99.73  E-value=5.3e-17  Score=139.05  Aligned_cols=109  Identities=20%  Similarity=0.335  Sum_probs=78.5

Q ss_pred             ccEEEEEEEeCCCCEEEEEEeeC-CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeee------e-------
Q 020742          107 VPVTGAIILDETYERCILVKGWK-GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEF------I-------  172 (322)
Q Consensus       107 v~v~g~Iv~~~~~~kvLLvrr~~-~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~------~-------  172 (322)
                      .++++++|++.++ +|||+|+.. ++.|++|||+++.||++.+||.||+.||||+++..+..+..+      .       
T Consensus         8 ~~~v~~~i~~~~g-~vLL~~r~~~~~~w~~P~G~~~~gE~~~~aa~REl~EEtG~~~~~~~~~~~~~~~~~y~~~~~~~~   86 (156)
T PRK00714          8 RPNVGIILLNRQG-QVFWGRRIGQGHSWQFPQGGIDPGETPEQAMYRELYEEVGLRPEDVEILAETRDWLRYDLPKRLVR   86 (156)
T ss_pred             CCeEEEEEEecCC-EEEEEEEcCCCCeEECCcccCCCCcCHHHHHHHHHHHHhCCCccceEEEEEcCCeEEecCcHHHhh
Confidence            3477888888774 999999977 589999999999999999999999999999998654433321      0       


Q ss_pred             --ecccCeEEEEEEEEEeecCCCCC--CCCCccceeeEEEEecccccc
Q 020742          173 --EKIFGQQRVRLYIIAGVRDDTAF--APQTKKEISEIAWQRLDELQP  216 (322)
Q Consensus       173 --~~~~~~~~~~~y~~~~~~~~~~~--~~~~~~Ei~~~~Wv~ldeL~~  216 (322)
                        ......+..++|++.........  .+.+.+|+.+++|++++++++
T Consensus        87 ~~~~~~~~~~~~~fl~~~~~~~~~~~l~~~~~~E~~~~~W~~~del~~  134 (156)
T PRK00714         87 RSKGVYRGQKQKWFLLRLTGDDSEINLNTTSHPEFDAWRWVSYWYPLD  134 (156)
T ss_pred             ccCCcccCcEEEEEEEEecCCCccccCCCCCCCCeeeeEeCCHHHHHH
Confidence              01111234556666543322222  222457999999999999987

>cd03675 Nudix_Hydrolase_2 Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function

Probab=99.73  E-value=7.3e-17  Score=133.80  Aligned_cols=105  Identities=19%  Similarity=0.246  Sum_probs=72.8

Q ss_pred             EEEEEEeCCCCEEEEEEeeC--CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeee--eecccCeE-EEEEE
Q 020742          110 TGAIILDETYERCILVKGWK--GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEF--IEKIFGQQ-RVRLY  184 (322)
Q Consensus       110 ~g~Iv~~~~~~kvLLvrr~~--~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~--~~~~~~~~-~~~~y  184 (322)
                      +++|+.+++  ++||++|.+  ++.|++|||+++.||++.+||.||++||||+++.....+..+  ........ ...+|
T Consensus         3 v~~ii~~~~--~vLlv~r~~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~f   80 (134)
T cd03675           3 VAAVVERDG--RFLLVEEETDGGLVFNQPAGHLEPGESLIEAAVRETLEETGWHVEPTALLGIYQWTAPDSDTTYLRFAF   80 (134)
T ss_pred             EEEEEEECC--EEEEEEEccCCCceEECCCccCCCCCCHHHHHHHHHHHHHCcccccceEEEEEEeecCCCCeeEEEEEE
Confidence            456666553  899999876  579999999999999999999999999999998764333322  21211222 22345


Q ss_pred             EEEeecCCCCCCCCCccceeeEEEEecccccccC
Q 020742          185 IIAGVRDDTAFAPQTKKEISEIAWQRLDELQPAS  218 (322)
Q Consensus       185 ~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~~  218 (322)
                      .+. +..... .....+|+.++.|++++++..+.
T Consensus        81 ~~~-~~~~~~-~~~~~~e~~~~~w~~~~el~~~~  112 (134)
T cd03675          81 AAE-LLEHLP-DQPLDSGIVRAHWLTLEEILALA  112 (134)
T ss_pred             EEE-ECCCCC-CCCCCCCceeeEEEeHHHHHhhh
Confidence            443 333221 12334688999999999999854

In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability,

>cd03674 Nudix_Hydrolase_1 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.73  E-value=3.6e-17  Score=136.98  Aligned_cols=108  Identities=26%  Similarity=0.356  Sum_probs=76.2

Q ss_pred             cEEEEEEEeCCCCEEEEEEeeCCCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeee------eeeeccc-----
Q 020742          108 PVTGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKD------EFIEKIF-----  176 (322)
Q Consensus       108 ~v~g~Iv~~~~~~kvLLvrr~~~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~------~~~~~~~-----  176 (322)
                      .++++++++++.++|||++|.+.+.|.+|||+++.||++.+||+||++||||+++..+....      .+.....     
T Consensus         3 ~~~~~~v~~~~~~~vLLv~r~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (138)
T cd03674           3 FTASAFVVNPDRGKVLLTHHRKLGSWLQPGGHIDPDESLLEAALRELREETGIELLGLRPLSVLVDLDVHPIDGHPKRGV   82 (138)
T ss_pred             EEEEEEEEeCCCCeEEEEEEcCCCcEECCceecCCCCCHHHHHHHHHHHHHCCCcccceeccccccceeEeecCCCCCCC
Confidence            46788888886359999998878899999999999999999999999999999876543321      1111111     


Q ss_pred             -CeE-EEEEEEEEeecCCCCCCCCCccceeeEEEEeccccccc
Q 020742          177 -GQQ-RVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  217 (322)
Q Consensus       177 -~~~-~~~~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~  217 (322)
                       ..+ ...+|.+....+..  .+...+|+.++.|++++++..+
T Consensus        83 ~~~~~~~~~y~~~~~~~~~--~~~~~~E~~~~~W~~~~el~~~  123 (138)
T cd03674          83 PGHLHLDLRFLAVAPADDV--APPKSDESDAVRWFPLDELASL  123 (138)
T ss_pred             CCcEEEEEEEEEEccCccc--cCCCCCcccccEEEcHHHhhhc
Confidence             122 33345554333221  2224678899999999999653

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamil

>cd04666 Nudix_Hydrolase_9 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.73  E-value=3.5e-17  Score=134.53  Aligned_cols=106  Identities=23%  Similarity=0.272  Sum_probs=76.0

Q ss_pred             EEEEEEEeCC--CCEEEEEEeeCCCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccce-eeeeeeeeccc-----CeEE
Q 020742          109 VTGAIILDET--YERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKL-LNKDEFIEKIF-----GQQR  180 (322)
Q Consensus       109 v~g~Iv~~~~--~~kvLLvrr~~~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l-~~~~~~~~~~~-----~~~~  180 (322)
                      ++|+|+++.+  .+++||+++.+.+.|.||||+|+.||++.+||+||++||||+++... ..+..+.....     .+..
T Consensus         2 ~~g~v~~~~~~~~~~vLLv~~~~~~~w~~PgG~ve~~E~~~~aa~RE~~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~   81 (122)
T cd04666           2 QAGAIPYRETGGEVEVLLVTSRRTGRWIVPKGGPEKDESPAEAAAREAWEEAGVRGKIGKRPLGRFEYRKRSKNRPPRCE   81 (122)
T ss_pred             EEEEEEEEEcCCceEEEEEEecCCCeEECCCCCcCCCCCHHHHHHHHHHHHhCCcccccceEEEEEEeeecCCCCCceEE
Confidence            5678877654  34899999877789999999999999999999999999999988765 55555432211     1334


Q ss_pred             EEEEEEEeecCCCCCCCCCccceeeEEEEeccccccc
Q 020742          181 VRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  217 (322)
Q Consensus       181 ~~~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~  217 (322)
                      +.+|.+. +....  ......++.++.|++++++..+
T Consensus        82 ~~~f~~~-~~~~~--~~~~~~e~~~~~W~~~~ea~~~  115 (122)
T cd04666          82 VAVFPLE-VTEEL--DEWPEMHQRKRKWFSPEEAALL  115 (122)
T ss_pred             EEEEEEE-Eeccc--cCCcccCceEEEEecHHHHHHh
Confidence            4445443 33322  1223456789999999999764

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s

>cd04669 Nudix_Hydrolase_11 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.73  E-value=5.3e-17  Score=132.92  Aligned_cols=104  Identities=19%  Similarity=0.301  Sum_probs=72.0

Q ss_pred             EEEEEEeCCCCEEEEEEeeC--CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeeeeecccCeEEEEEEEEE
Q 020742          110 TGAIILDETYERCILVKGWK--GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQQRVRLYIIA  187 (322)
Q Consensus       110 ~g~Iv~~~~~~kvLLvrr~~--~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~~~~~~~~~~~~~y~~~  187 (322)
                      +++|+++++ ++|||++|.+  .+.|+||||+++.||++.+||+||++||||+++.....+..+..   .+...++|.+.
T Consensus         3 ~~~ii~~~~-~~vLL~~r~~~~~~~w~lPGG~ve~gEs~~~a~~REl~EEtGl~~~~~~~~~~~~~---~~~~~~~f~~~   78 (121)
T cd04669           3 ASIVIINDQ-GEILLIRRIKPGKTYYVFPGGGIEEGETPEEAAKREALEELGLDVRVEEIFLIVNQ---NGRTEHYFLAR   78 (121)
T ss_pred             eEEEEEeCC-CEEEEEEEecCCCCcEECCceeccCCCCHHHHHHHHHHHhhCeeEeeeeEEEEEee---CCcEEEEEEEE
Confidence            356666664 3999999876  47899999999999999999999999999999854332222211   22345666666


Q ss_pred             eecCCCCCCC------CCccceeeEEEEeccccccc
Q 020742          188 GVRDDTAFAP------QTKKEISEIAWQRLDELQPA  217 (322)
Q Consensus       188 ~~~~~~~~~~------~~~~Ei~~~~Wv~ldeL~~~  217 (322)
                      ...+......      .+..++.++.|+++++|+.+
T Consensus        79 ~~~g~~~~~~~~e~~~~~~~~~~~~~Wv~~~el~~l  114 (121)
T cd04669          79 VISGKLGLGVGEEFERQSDDNQYHPVWVDLDQLETI  114 (121)
T ss_pred             EECCeecCCCchhhcccCCCCceEEEEEEHHHcccC
Confidence            5543221100      11344667999999999874

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03430 GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mannose mannosyl hydrolase (GDPMH)) is a member of the Nudix hydrolase superfamily

Probab=99.73  E-value=4.7e-17  Score=137.49  Aligned_cols=107  Identities=21%  Similarity=0.200  Sum_probs=75.1

Q ss_pred             cEEEEEEEeCCCCEEEEEEeeC---CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccce--ee--eeeeee------c
Q 020742          108 PVTGAIILDETYERCILVKGWK---GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKL--LN--KDEFIE------K  174 (322)
Q Consensus       108 ~v~g~Iv~~~~~~kvLLvrr~~---~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l--~~--~~~~~~------~  174 (322)
                      .++++||++.++ +|||+||..   +|.|.+|||+++.|||+.+||+||++||||+++...  ..  ...+..      .
T Consensus        13 v~v~~vI~~~~g-~vLl~~R~~~p~~g~w~lPGG~ve~gEs~~~aa~RE~~EE~Gl~v~~~~~~~l~~~~~~~~~~~~~~   91 (144)
T cd03430          13 VSIDLIVENEDG-QYLLGKRTNRPAQGYWFVPGGRIRKNETLTEAFERIAKDELGLEFLISDAELLGVFEHFYDDNFFGD   91 (144)
T ss_pred             EEEEEEEEeCCC-eEEEEEccCCCCCCcEECCCceecCCCCHHHHHHHHHHHHHCCCcccccceEEEEEEEEeccccccC
Confidence            367788888764 999999864   789999999999999999999999999999988643  22  222111      1


Q ss_pred             ccCeEEEEEEEEEeecCCCCCCCCCccceeeEEEEeccccccc
Q 020742          175 IFGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  217 (322)
Q Consensus       175 ~~~~~~~~~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~  217 (322)
                      ....+.+.+++.+......  .....+|+.+++|++++++++.
T Consensus        92 ~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~~~W~~~~el~~~  132 (144)
T cd03430          92 DFSTHYVVLGYVLKLSSNE--LLLPDEQHSEYQWLTSDELLAD  132 (144)
T ss_pred             CCccEEEEEEEEEEEcCCc--ccCCchhccEeEEecHHHHhcC
Confidence            1222334443333333321  1334678999999999999863

This class of enzymes is unique from other members of the superfamily in two aspects. First, it contains a modified Nudix signature sequence. The slight changes to the conserved sequence motif, GX5EX7REUXEEXGU, where U = I, L or V), are believed to contribute to the removal of all magnesium binding sites but one, retaining only the metal site that coordinates the pyrophosphate of the substrate. Secondly, it is not a pyrophosphatase that substitutes at a phosphorus; instead, it hydrolyzes nucleotide sugars such as GDP-mannose to GDP and mannose, cleaving the phosphoglycosyl bond by substituting at a carbon position. GDP-mannose provides mannosyl components for cell wall synthesis and is required for the synthesis of other glycosyl donors (such as GDP-fucose and colitose) for the cell wall. The importance of GDP-sugar hydrolase activities is thus close

>cd04696 Nudix_Hydrolase_37 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.73  E-value=4.4e-17  Score=133.71  Aligned_cols=105  Identities=24%  Similarity=0.260  Sum_probs=74.9

Q ss_pred             cEEEEEEEeCCCCEEEEEEeeC-CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeee--eeeee-cc---cCeEE
Q 020742          108 PVTGAIILDETYERCILVKGWK-GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNK--DEFIE-KI---FGQQR  180 (322)
Q Consensus       108 ~v~g~Iv~~~~~~kvLLvrr~~-~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~--~~~~~-~~---~~~~~  180 (322)
                      .+++++|+++++ +|||+|+.. .+.|++|||+++.|||+.+||+||++||||+++.....+  ..+.. ..   ..+..
T Consensus         3 ~~v~~~i~~~~~-~iLL~r~~~~~~~w~lPGG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (125)
T cd04696           3 VTVGALIYAPDG-RILLVRTTKWRGLWGVPGGKVEWGETLEEALKREFREETGLKLRDIKFAMVQEAIFSEEFHKPAHFV   81 (125)
T ss_pred             cEEEEEEECCCC-CEEEEEccCCCCcEeCCceeccCCCCHHHHHHHHHHHHhCCcccccceEEEEEEeccCCCCCccEEE
Confidence            567888888664 999999765 789999999999999999999999999999988654322  22211 11   12233


Q ss_pred             EEEEEEEeecCCCCCCCCCccceeeEEEEeccccccc
Q 020742          181 VRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  217 (322)
Q Consensus       181 ~~~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~  217 (322)
                      +..|.+.....  .  ....+|+.+++|++++++.++
T Consensus        82 ~~~~~~~~~~~--~--~~~~~e~~~~~W~~~~el~~~  114 (125)
T cd04696          82 LFDFFARTDGT--E--VTPNEEIVEWEWVTPEEALDY  114 (125)
T ss_pred             EEEEEEEecCC--c--ccCCcccceeEEECHHHHhcC
Confidence            34455543221  1  233478899999999999874

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PRK15434 GDP-mannose mannosyl hydrolase NudD; Provisional

Probab=99.73  E-value=6.2e-17  Score=139.02  Aligned_cols=106  Identities=18%  Similarity=0.219  Sum_probs=73.2

Q ss_pred             cEEEEEEEeCCCCEEEEEEeeC---CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccc----eeeeeeee-ecc----
Q 020742          108 PVTGAIILDETYERCILVKGWK---GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSK----LLNKDEFI-EKI----  175 (322)
Q Consensus       108 ~v~g~Iv~~~~~~kvLLvrr~~---~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~----l~~~~~~~-~~~----  175 (322)
                      .++++||.++. ++|||+||..   .|.|+||||+|+.|||+.+||+||++||||+++..    +..+..+. ...    
T Consensus        18 ~~v~~vI~~~~-g~VLL~kR~~~~~~g~W~lPGG~VE~GEt~~~Aa~REl~EEtGl~v~~~~~~~~~~~~~~~~~~~~~~   96 (159)
T PRK15434         18 ISLDFIVENSR-GEFLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFERLTMAELGLRLPITAGQFYGVWQHFYDDNFSGT   96 (159)
T ss_pred             EEEEEEEECCC-CEEEEEEccCCCCCCcEECCceecCCCCCHHHHHHHHHHHHHCCccccccceEEEEEEeecccccCCC
Confidence            46778888765 4999999864   58999999999999999999999999999998642    22221111 111    


Q ss_pred             -cCeE-EEEEEEEEeecCCCCCCCCCccceeeEEEEeccccccc
Q 020742          176 -FGQQ-RVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  217 (322)
Q Consensus       176 -~~~~-~~~~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~  217 (322)
                       ...+ .+.+|.+....+.   ......|+.+++|+++++++..
T Consensus        97 ~~~~~~i~~~f~~~~~~g~---~~~~~~E~~~~~W~~~~el~~~  137 (159)
T PRK15434         97 DFTTHYVVLGFRLRVAEED---LLLPDEQHDDYRWLTPDALLAS  137 (159)
T ss_pred             ccceEEEEEEEEEEecCCc---ccCChHHeeEEEEEeHHHhhhc
Confidence             1123 3334444433222   1223568999999999999873

>cd04681 Nudix_Hydrolase_22 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.72  E-value=4.8e-17  Score=134.12  Aligned_cols=104  Identities=21%  Similarity=0.401  Sum_probs=76.6

Q ss_pred             EEEEEEEeCCCCEEEEEEeeC---CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeeeee----cccCeEEE
Q 020742          109 VTGAIILDETYERCILVKGWK---GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIE----KIFGQQRV  181 (322)
Q Consensus       109 v~g~Iv~~~~~~kvLLvrr~~---~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~~~----~~~~~~~~  181 (322)
                      +++++|+++++ ++||++|..   .+.|.+|||+++.||++.+||.||++||||+++..+..+..+..    .....+.+
T Consensus         3 av~~~i~~~~~-~vLL~~r~~~~~~~~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~   81 (130)
T cd04681           3 AVGVLILNEDG-ELLVVRRAREPGKGTLDLPGGFVDPGESAEEALIREIREETGLKVTELSYLFSLPNTYPYGGMEYDTL   81 (130)
T ss_pred             eEEEEEEcCCC-cEEEEEecCCCCCCcEeCCceeecCCCCHHHHHHHHHHHHhCCcccceeEEEeecceeeeCCceeEEE
Confidence            46777888764 999999865   58999999999999999999999999999999887655543321    11222344


Q ss_pred             EEEEEEeecCCCCCCCCCccceeeEEEEeccccc
Q 020742          182 RLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQ  215 (322)
Q Consensus       182 ~~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~  215 (322)
                      .+|+++......  ...+.+|+.++.|+++++|+
T Consensus        82 ~~~~~~~~~~~~--~~~~~~e~~~~~W~~~~el~  113 (130)
T cd04681          82 DLFFVCQVDDKP--IVKAPDDVAELKWVVPQDIE  113 (130)
T ss_pred             EEEEEEEeCCCC--CcCChHHhheeEEecHHHCC
Confidence            455555554332  12345789999999999986

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04684 Nudix_Hydrolase_25 Contains a crystal structure of the Nudix hydrolase from Enterococcus faecalis, which has an unknown function

Probab=99.72  E-value=6.3e-17  Score=132.37  Aligned_cols=106  Identities=21%  Similarity=0.207  Sum_probs=75.5

Q ss_pred             EEEEEEEeCCCCEEEEEEeeC---CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeee--eec-c-c---Ce
Q 020742          109 VTGAIILDETYERCILVKGWK---GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEF--IEK-I-F---GQ  178 (322)
Q Consensus       109 v~g~Iv~~~~~~kvLLvrr~~---~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~--~~~-~-~---~~  178 (322)
                      .+++||+++  ++|||+++.+   .+.|.+|||+++.||++.+||+||++||||+++..+..+..+  ... . .   .+
T Consensus         2 ~~~~ii~~~--~~vLl~~~~~~~~~~~w~lPgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~   79 (128)
T cd04684           2 GAYAVIPRD--GKLLLIQKNGGPYEGRWDLPGGGIEPGESPEEALHREVLEETGLTVEIGRRLGSASRYFYSPDGDYDAH   79 (128)
T ss_pred             eeEEEEEeC--CEEEEEEccCCCCCCeEECCCcccCCCCCHHHHHHHHHHHHhCcEeecceeeeEEEEEEECCCCCeecc
Confidence            456777776  3999999987   499999999999999999999999999999988764444332  111 1 1   13


Q ss_pred             EEEEEEEEEeecCCCCCCCCCccceeeEEEEeccccccc
Q 020742          179 QRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  217 (322)
Q Consensus       179 ~~~~~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~  217 (322)
                      ....+|.+........ .....+|..++.|++++++...
T Consensus        80 ~~~~~f~~~~~~~~~~-~~~~~~e~~~~~W~~~~~l~~~  117 (128)
T cd04684          80 HLCVFYDARVVGGALP-VQEPGEDSHGAAWLPLDEAIER  117 (128)
T ss_pred             EEEEEEEEEEecCccc-cCCCCCCceeeEEECHHHhhcc
Confidence            3445565544433211 1234567889999999999863

In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability

>cd04677 Nudix_Hydrolase_18 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.72  E-value=6.6e-17  Score=133.36  Aligned_cols=108  Identities=28%  Similarity=0.338  Sum_probs=78.2

Q ss_pred             ccEEEEEEEeCCCCEEEEEEeeCCCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeee-----ee---cccCe
Q 020742          107 VPVTGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEF-----IE---KIFGQ  178 (322)
Q Consensus       107 v~v~g~Iv~~~~~~kvLLvrr~~~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~-----~~---~~~~~  178 (322)
                      .+++++++++.++ ++||++|...+.|.||||+|+.||++.+||+||++||||+++.....+..+     +.   .....
T Consensus         7 ~~~~~~~v~~~~~-~vLL~~r~~~~~w~~PgG~v~~gEt~~~aa~REl~EE~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (132)
T cd04677           7 LVGAGVILLNEQG-EVLLQKRSDTGDWGLPGGAMELGESLEETARRELKEETGLEVEELELLGVYSGKEFYVKPNGDDEQ   85 (132)
T ss_pred             ccceEEEEEeCCC-CEEEEEecCCCcEECCeeecCCCCCHHHHHHHHHHHHhCCeeeeeEEEEEecCCceeecCCCCcEE
Confidence            4566777777764 899999887789999999999999999999999999999998865444322     11   11112


Q ss_pred             EEEEEEEEEeecCCCCCCCCCccceeeEEEEeccccccc
Q 020742          179 QRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  217 (322)
Q Consensus       179 ~~~~~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~  217 (322)
                      ..+.+|++...... .. ....+|+.++.|+++++++.+
T Consensus        86 ~~~~~~~~~~~~~~-~~-~~~~~e~~~~~W~~~~e~~~~  122 (132)
T cd04677          86 YIVTLYYVTKVFGG-KL-VPDGDETLELKFFSLDELPEL  122 (132)
T ss_pred             EEEEEEEEEeccCC-cc-cCCCCceeeEEEEChhHCccc
Confidence            34455555544322 11 234678899999999999874

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04689 Nudix_Hydrolase_30 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.72  E-value=7.7e-17  Score=132.20  Aligned_cols=105  Identities=19%  Similarity=0.248  Sum_probs=72.9

Q ss_pred             EEEEEEeCCCCEEEEEEeeCCCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeeee----ecccC-eEEEEEE
Q 020742          110 TGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFI----EKIFG-QQRVRLY  184 (322)
Q Consensus       110 ~g~Iv~~~~~~kvLLvrr~~~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~~----~~~~~-~~~~~~y  184 (322)
                      +++||++++  ++||+++...+.|.+|||+++.||++.+||+||++||||+++.....+..+.    ..... +...++|
T Consensus         4 ~~~vi~~~~--~vLlv~~~~~~~~~lPGG~ve~gEt~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~~~~~f   81 (125)
T cd04689           4 ARAIVRAGN--KVLLARVIGQPHYFLPGGHVEPGETAENALRRELQEELGVAVSDGRFLGAIENQWHEKGVRTHEINHIF   81 (125)
T ss_pred             EEEEEEeCC--EEEEEEecCCCCEECCCCcCCCCCCHHHHHHHHHHHHhCceeeccEEEEEEeeeeccCCceEEEEEEEE
Confidence            455555543  8999998777899999999999999999999999999999987654443321    11122 2334555


Q ss_pred             EEEeecCCCCCCCCCccceeeEEEEecccccc
Q 020742          185 IIAGVRDDTAFAPQTKKEISEIAWQRLDELQP  216 (322)
Q Consensus       185 ~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~  216 (322)
                      .+..............+|+.++.|++++++..
T Consensus        82 ~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~  113 (125)
T cd04689          82 AVESSWLASDGPPQADEDHLSFSWVPVSDLSL  113 (125)
T ss_pred             EEEcccccccCCccCccceEEEEEccHHHccc
Confidence            55443322112233456789999999999754

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate sp

>cd04687 Nudix_Hydrolase_28 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.72  E-value=1.2e-16  Score=131.77  Aligned_cols=107  Identities=23%  Similarity=0.329  Sum_probs=72.3

Q ss_pred             EEEEEEEeCCCCEEEEEEeeC--CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccc--eeeeeeeeec------ccCe
Q 020742          109 VTGAIILDETYERCILVKGWK--GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSK--LLNKDEFIEK------IFGQ  178 (322)
Q Consensus       109 v~g~Iv~~~~~~kvLLvrr~~--~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~--l~~~~~~~~~------~~~~  178 (322)
                      .+++||.+++  +|||+++.+  ++.|.+|||+++.||++.+||+||+.||||+.+..  +..+..+...      ....
T Consensus         3 ~a~~iv~~~~--~vLl~~r~~~~~~~~~lPGG~ve~gEt~~~aa~RE~~EEtGl~v~~~~~~~~~~~~~~~~~~~~~~~~   80 (128)
T cd04687           3 SAKAVIIKND--KILLIKHHDDGGVWYILPGGGQEPGETLEDAAHRECKEEIGIDVEIGPLLFVREYIGHNPTSELPGHF   80 (128)
T ss_pred             EEEEEEEECC--EEEEEEEEcCCCCeEECCCcccCCCCCHHHHHHHHHHHHHCCccccCcEEEEEEEeccCccccCCCce
Confidence            4667777653  999999876  57899999999999999999999999999999875  3333333211      1123


Q ss_pred             EEE-EEEEEEeecCCC-CCCCCCccceeeEEEEeccccccc
Q 020742          179 QRV-RLYIIAGVRDDT-AFAPQTKKEISEIAWQRLDELQPA  217 (322)
Q Consensus       179 ~~~-~~y~~~~~~~~~-~~~~~~~~Ei~~~~Wv~ldeL~~~  217 (322)
                      +.+ .+|.+....+.. ........+..+++|+++++++++
T Consensus        81 ~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~l~~~  121 (128)
T cd04687          81 HQVELMFECKIKSGTPAKTPSKPDPNQIGVEWLKLKELGDI  121 (128)
T ss_pred             eEEEEEEEEEECCCCcccccCCCCCCEEeeEEEcHHHhCcc
Confidence            334 444444333221 111122345578999999999874

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PRK11762 nudE adenosine nucleotide hydrolase NudE; Provisional

Probab=99.72  E-value=1.1e-16  Score=140.84  Aligned_cols=119  Identities=18%  Similarity=0.264  Sum_probs=90.0

Q ss_pred             cEEEEEEEeCCCCEEEEEEeeC----CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeeeee-cccCeEEEE
Q 020742          108 PVTGAIILDETYERCILVKGWK----GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIE-KIFGQQRVR  182 (322)
Q Consensus       108 ~v~g~Iv~~~~~~kvLLvrr~~----~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~~~-~~~~~~~~~  182 (322)
                      .+++++.++++ ++|||+++++    ...|+||||.+|.||++.+||+||++||||+++..+..+..+.. +......++
T Consensus        48 ~~v~v~~~~~~-~~vlLvrq~r~~~~~~~~elPaG~ve~gE~~~~aA~REl~EEtG~~~~~l~~l~~~~~~~~~~~~~~~  126 (185)
T PRK11762         48 GAVMIVPILDD-DTLLLIREYAAGTERYELGFPKGLIDPGETPLEAANRELKEEVGFGARQLTFLKELSLAPSYFSSKMN  126 (185)
T ss_pred             CEEEEEEEeCC-CEEEEEEeecCCCCCcEEEccceeCCCCCCHHHHHHHHHHHHHCCCCcceEEEEEEecCCCccCcEEE
Confidence            34555556655 4899999986    56799999999999999999999999999999998887776543 455567888


Q ss_pred             EEEEEeecCCCCCCCCCccceeeEEEEeccccccc--CCCcc-chhhhhh
Q 020742          183 LYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA--SDDVI-SHGVTGL  229 (322)
Q Consensus       183 ~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~--~~~~~-~~~~~~~  229 (322)
                      +|++.......  ...++.|..++.|+++++++++  .+++. ++++.++
T Consensus       127 ~f~a~~~~~~~--~~~~e~E~i~~~~~~~~e~~~~~~~g~i~d~~ti~al  174 (185)
T PRK11762        127 IVLAEDLYPER--LEGDEPEPLEVVRWPLADLDELLARPDFSEARSVAAL  174 (185)
T ss_pred             EEEEEcccccc--CCCCCCceeEEEEEcHHHHHHHHHcCCCCcHHHHHHH
Confidence            89887654422  1234567778999999999874  45555 6666554

>cd04672 Nudix_Hydrolase_14 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.72  E-value=1e-16  Score=131.33  Aligned_cols=104  Identities=25%  Similarity=0.332  Sum_probs=71.8

Q ss_pred             EEEEEEeCCCCEEEEEEeeCCCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeeeee--cc---cCeEEEEEE
Q 020742          110 TGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIE--KI---FGQQRVRLY  184 (322)
Q Consensus       110 ~g~Iv~~~~~~kvLLvrr~~~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~~~--~~---~~~~~~~~y  184 (322)
                      ++++|+++  +++||+++.+.+.|.+|||+++.||++.+||+||++||||+.+.....+..+..  ..   .....+.++
T Consensus         5 v~~~i~~~--~~vLL~~~~~~~~w~~PGG~ve~gEs~~~aa~REl~EEtG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (123)
T cd04672           5 VRAAIFKD--GKILLVREKSDGLWSLPGGWADVGLSPAENVVKEVKEETGLDVKVRKLAAVDDRNKHHPPPQPYQVYKLF   82 (123)
T ss_pred             EEEEEEEC--CEEEEEEEcCCCcEeCCccccCCCCCHHHHHHHHHHHHhCCeeeEeEEEEEeccccccCCCCceEEEEEE
Confidence            34555565  399999998889999999999999999999999999999998843222222211  11   112334444


Q ss_pred             EEEeecCCCCCCCCCccceeeEEEEecccccccC
Q 020742          185 IIAGVRDDTAFAPQTKKEISEIAWQRLDELQPAS  218 (322)
Q Consensus       185 ~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~~  218 (322)
                      +++..... .  ....+|+.+++|+++++++.+.
T Consensus        83 f~~~~~~~-~--~~~~~E~~~~~W~~~~el~~l~  113 (123)
T cd04672          83 FLCEILGG-E--FKPNIETSEVGFFALDDLPPLS  113 (123)
T ss_pred             EEEEecCC-c--ccCCCceeeeEEECHHHCcccc
Confidence            44444332 2  2234789999999999998853

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04673 Nudix_Hydrolase_15 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.72  E-value=6.7e-17  Score=131.26  Aligned_cols=102  Identities=26%  Similarity=0.391  Sum_probs=72.7

Q ss_pred             EEEEEEeCCCCEEEEEEeeC---CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeee--eecc----c-CeE
Q 020742          110 TGAIILDETYERCILVKGWK---GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEF--IEKI----F-GQQ  179 (322)
Q Consensus       110 ~g~Iv~~~~~~kvLLvrr~~---~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~--~~~~----~-~~~  179 (322)
                      ++++++++  +++||+++.+   .+.|.||||+++.||++.+||+||++||||+++.....+..+  ....    . .+.
T Consensus         3 v~~ii~~~--~~vLl~~r~~~~~~~~w~~PgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (122)
T cd04673           3 VGAVVFRG--GRVLLVRRANPPDAGLWSFPGGKVELGETLEQAALRELLEETGLEAEVGRLLTVVDVIERDAAGRVEFHY   80 (122)
T ss_pred             EEEEEEEC--CEEEEEEEcCCCCCCeEECCCcccCCCCCHHHHHHHHHHHhhCcEeeeceeEEEEEEeeccCCCccceEE
Confidence            45666665  3899999876   688999999999999999999999999999998654433322  1111    1 123


Q ss_pred             EEEEEEEEeecCCCCCCCCCccceeeEEEEeccccccc
Q 020742          180 RVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  217 (322)
Q Consensus       180 ~~~~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~  217 (322)
                      .+..|.+......    ....+|+.++.|++++++.++
T Consensus        81 ~~~~~~~~~~~~~----~~~~~E~~~~~w~~~~el~~~  114 (122)
T cd04673          81 VLIDFLCRYLGGE----PVAGDDALDARWVPLDELAAL  114 (122)
T ss_pred             EEEEEEEEeCCCc----ccCCcccceeEEECHHHHhhC
Confidence            3444555433322    234578899999999999874

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04511 Nudix_Hydrolase_4 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.72  E-value=7.5e-17  Score=133.50  Aligned_cols=109  Identities=19%  Similarity=0.133  Sum_probs=77.9

Q ss_pred             cCCcccccEEEEEEEeCCCCEEEEEEeeC---CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeeeeecccC
Q 020742          101 TSYKVRVPVTGAIILDETYERCILVKGWK---GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFG  177 (322)
Q Consensus       101 ~~y~~~v~v~g~Iv~~~~~~kvLLvrr~~---~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~~~~~~~  177 (322)
                      ..|.+...++++|+.++  ++|||++|..   .+.|++|||+++.||++++||+||++||||+++.....+..+ .....
T Consensus         7 ~~~~~~~~~v~~ii~~~--~~vLL~kr~~~~~~g~w~lPgG~ve~gE~~~~a~~REl~EEtGl~~~~~~~~~~~-~~~~~   83 (130)
T cd04511           7 IHYQNPKIIVGCVPEWE--GKVLLCRRAIEPRHGFWTLPAGFMENGETTEQGALRETWEEAGARVEIDGLYAVY-SVPHI   83 (130)
T ss_pred             ccCCCCcEEEEEEEecC--CEEEEEEecCCCCCCeEECCcccccCCCCHHHHHHHHHHHHhCCEEEeeeEEEEE-ecCCc
Confidence            34455555677777776  3899999854   689999999999999999999999999999998654333333 22223


Q ss_pred             eEEEEEEEEEeecCCCCCCCCCccceeeEEEEecccccc
Q 020742          178 QQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQP  216 (322)
Q Consensus       178 ~~~~~~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~  216 (322)
                      .....+|.+......    .....|..++.|+++++|+.
T Consensus        84 ~~~~~~f~~~~~~~~----~~~~~e~~~~~~~~~~~l~~  118 (130)
T cd04511          84 SQVYMFYRARLLDLD----FAPGPESLEVRLFTEEEIPW  118 (130)
T ss_pred             eEEEEEEEEEEcCCc----ccCCcchhceEEECHHHCCc
Confidence            344555655443332    22346778999999999974

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specifici

>cd04676 Nudix_Hydrolase_17 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.71  E-value=1.5e-16  Score=129.94  Aligned_cols=108  Identities=26%  Similarity=0.391  Sum_probs=75.4

Q ss_pred             ccEEEEEEEeCCCCEEEEEEeeCCCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeee-----e-ecccC--e
Q 020742          107 VPVTGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEF-----I-EKIFG--Q  178 (322)
Q Consensus       107 v~v~g~Iv~~~~~~kvLLvrr~~~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~-----~-~~~~~--~  178 (322)
                      .+++++||+++++ ++||++|...+.|.||||+++.||++.+||+||++||||+++.....+..+     . ....+  +
T Consensus         2 ~~~v~~ii~~~~~-~vLl~~r~~~~~w~lPgG~v~~~E~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (129)
T cd04676           2 LPGVTAVVRDDEG-RVLLIRRSDNGLWALPGGAVEPGESPADTAVREVREETGLDVEVTGLVGIYTGPVHVVTYPNGDVR   80 (129)
T ss_pred             cceEEEEEECCCC-eEEEEEecCCCcEECCeeccCCCCCHHHHHHHHHHHHhCceeEeeEEEEEeecccceeecCCCCcE
Confidence            3567788888764 999999987899999999999999999999999999999987653321111     0 11111  2


Q ss_pred             EEEEEEEEEeecCCCCCCCCCccceeeEEEEeccccccc
Q 020742          179 QRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  217 (322)
Q Consensus       179 ~~~~~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~  217 (322)
                      +.+.+++.........  .....|..++.|++++++..+
T Consensus        81 ~~~~~~~~~~~~~~~~--~~~~~e~~~~~w~~~~el~~~  117 (129)
T cd04676          81 QYLDITFRCRVVGGEL--RVGDDESLDVAWFDPDGLPPL  117 (129)
T ss_pred             EEEEEEEEEEeeCCee--cCCCCceeEEEEEChhhCccc
Confidence            3444444433332211  124577889999999999874

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>COG1051 ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]

Probab=99.71  E-value=7e-17  Score=136.71  Aligned_cols=112  Identities=27%  Similarity=0.407  Sum_probs=84.0

Q ss_pred             CCcccccEEEEEEEeCCCCEEEEEEeeC---CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeeeeecc---
Q 020742          102 SYKVRVPVTGAIILDETYERCILVKGWK---GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKI---  175 (322)
Q Consensus       102 ~y~~~v~v~g~Iv~~~~~~kvLLvrr~~---~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~~~~~---  175 (322)
                      .|.....++++++...+  +||||||..   .|.|.+|||+++.|||+++||.||++||||+++..+..+..+-...   
T Consensus         5 ~~~~p~~~v~~~i~~~~--~iLLvrR~~~p~~g~WalPGG~ve~GEt~eeaa~REl~EETgL~~~~~~~~~v~~~~~rd~   82 (145)
T COG1051           5 GYRTPLVAVGALIVRNG--RILLVRRANEPGAGYWALPGGFVEIGETLEEAARRELKEETGLRVRVLELLAVFDDPGRDP   82 (145)
T ss_pred             cCCCcceeeeEEEEeCC--EEEEEEecCCCCCCcEeCCCccCCCCCCHHHHHHHHHHHHhCCcccceeEEEEecCCCCCC
Confidence            45666777888888775  899999988   5899999999999999999999999999999987655554443222   


Q ss_pred             cCeEEEEEEEEEeecCCCCCCCCCccceeeEEEEeccccccc
Q 020742          176 FGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  217 (322)
Q Consensus       176 ~~~~~~~~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~  217 (322)
                      ..++...+|+++...+.  ....+..+...+.|+++++++.+
T Consensus        83 r~~~v~~~~~~~~~~g~--~~~~~~~d~~~~~~~~~~~l~~~  122 (145)
T COG1051          83 RGHHVSFLFFAAEPEGE--LLAGDGDDAAEVGWFPLDELPEL  122 (145)
T ss_pred             ceeEEEEEEEEEecCCC--cccCChhhHhhcceecHhHcccc
Confidence            23455556666554332  22333347788999999999974

>PRK10729 nudF ADP-ribose pyrophosphatase NudF; Provisional

Probab=99.71  E-value=1.4e-16  Score=142.08  Aligned_cols=126  Identities=12%  Similarity=0.055  Sum_probs=95.5

Q ss_pred             ccEEEEEEEeCCCCEEEEEEeeCC---------CcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeeeee-ccc
Q 020742          107 VPVTGAIILDETYERCILVKGWKG---------SSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIE-KIF  176 (322)
Q Consensus       107 v~v~g~Iv~~~~~~kvLLvrr~~~---------~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~~~-~~~  176 (322)
                      ..+|++|.++++.++|||+++++.         ..|++|+|++|+||++.+||+||+.||||+.+..+..+..++. ++.
T Consensus        49 ~~~V~il~~~~~~~~vlLvrQyR~~~~~~~~~~~~lE~PAG~vd~gE~p~~aA~REL~EETGy~a~~~~~l~~~~~spg~  128 (202)
T PRK10729         49 GHAAVLLPFDPVRDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGESVEDVARREAIEEAGLIVGRTKPVLSYLASPGG  128 (202)
T ss_pred             CCeEEEEEEECCCCEEEEEEeeecccccCCCCCeEEEccceEcCCCCCHHHHHHHHHHHHhCceeeEEEEEEEEEcCCCc
Confidence            356777778765459999999982         3699999999999999999999999999999988877766544 567


Q ss_pred             CeEEEEEEEEEe-ecCC-CCCCCCCccceeeEEEEeccccccc--CCCcc-chhhhhhhhh
Q 020742          177 GQQRVRLYIIAG-VRDD-TAFAPQTKKEISEIAWQRLDELQPA--SDDVI-SHGVTGLKLY  232 (322)
Q Consensus       177 ~~~~~~~y~~~~-~~~~-~~~~~~~~~Ei~~~~Wv~ldeL~~~--~~~~~-~~~~~~~~~~  232 (322)
                      ..+.+++|++.. .... ......++.|..++.|++++++.++  ++++. +.++.++.++
T Consensus       129 ~~e~~~~fla~~~~~~~~~~~~~~de~E~i~v~~~~~~e~~~~~~~G~i~d~~ti~al~~~  189 (202)
T PRK10729        129 TSERSSIMVGEVDATTASGIHGLADENEDIRVHVVSREQAYQWVEEGKIDNAASVIALQWL  189 (202)
T ss_pred             CceEEEEEEEEEcchhcccCCCCCCCCCceEEEEEcHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence            788999999874 2211 1112345677778999999999884  66666 6666665433

>cd04688 Nudix_Hydrolase_29 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.71  E-value=1.5e-16  Score=130.65  Aligned_cols=107  Identities=18%  Similarity=0.187  Sum_probs=74.4

Q ss_pred             cEEEEEEEeCCCCEEEEEEeeCCCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeeee----ecc-cCeEEEE
Q 020742          108 PVTGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFI----EKI-FGQQRVR  182 (322)
Q Consensus       108 ~v~g~Iv~~~~~~kvLLvrr~~~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~~----~~~-~~~~~~~  182 (322)
                      .++++|+. ++  +|||+|+...+.|.+|||+++.||++.+||+||++||||+++.....+..+.    ... ..+....
T Consensus         3 ~v~~vi~~-~~--~vLl~~~~~~~~w~lPgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (126)
T cd04688           3 RAAAIIIH-NG--KLLVQKNPDETFYRPPGGGIEFGESSEEALIREFKEELGLKIEITRLLGVVENIFTYNGKPGHEIEF   79 (126)
T ss_pred             EEEEEEEE-CC--EEEEEEeCCCCeEECCCccccCCCCHHHHHHHHHHHHhCCceecceeeEEEEEeeccCCcccEEEEE
Confidence            45555554 43  8999998777899999999999999999999999999999887654433321    111 2234455


Q ss_pred             EEEEEeecCCCCC----CCCCccceeeEEEEeccccccc
Q 020742          183 LYIIAGVRDDTAF----APQTKKEISEIAWQRLDELQPA  217 (322)
Q Consensus       183 ~y~~~~~~~~~~~----~~~~~~Ei~~~~Wv~ldeL~~~  217 (322)
                      +|.+....+....    ...+.+|+.++.|++++++..+
T Consensus        80 ~f~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~  118 (126)
T cd04688          80 YYLVTLLDESLYQQDIEILEEEGEKIVFRWIPIDELKEI  118 (126)
T ss_pred             EEEEEeCCCcccccccceeccCCCEEEEEEeeHHHcccC
Confidence            6655543332111    0124578999999999999864

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PRK09438 nudB dihydroneopterin triphosphate pyrophosphatase; Provisional

Probab=99.71  E-value=8.9e-17  Score=135.91  Aligned_cols=110  Identities=23%  Similarity=0.296  Sum_probs=76.1

Q ss_pred             CCcccccEEEEEEEeCCCCEEEEEEeeC-CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcc--cceeeee-----ee--
Q 020742          102 SYKVRVPVTGAIILDETYERCILVKGWK-GSSWSFPRGKKNKDEEDHACAIREVQEETGFDV--SKLLNKD-----EF--  171 (322)
Q Consensus       102 ~y~~~v~v~g~Iv~~~~~~kvLLvrr~~-~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v--~~l~~~~-----~~--  171 (322)
                      .|+.++ .+++++++.++ +|||++|.. .+.|++|||+++.|||+.+||+||++||||+++  ..+..+.     .+  
T Consensus         3 ~~~~~~-~v~~vi~~~~~-~vLl~~r~~~~~~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~   80 (148)
T PRK09438          3 PYKRPV-SVLVVIYTPDL-GVLMLQRADDPDFWQSVTGSLEEGETPAQTAIREVKEETGIDVLAEQLTLIDCQRSIEYEI   80 (148)
T ss_pred             CccCce-EEEEEEEeCCC-eEEEEEecCCCCcEeCCcccCCCCCCHHHHHHHHHHHHhCcCccccceeeccccccccccc
Confidence            344433 45677777664 899998865 689999999999999999999999999999988  3332211     11  


Q ss_pred             e-------ecccCeEEEEEEEEEeecCCCCCCCCCccceeeEEEEeccccccc
Q 020742          172 I-------EKIFGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  217 (322)
Q Consensus       172 ~-------~~~~~~~~~~~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~  217 (322)
                      .       .....+...++|.+.. .....  + ..+|+.++.|++++++.++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~f~~~~-~~~~~--~-~~~E~~~~~W~~~~e~~~~  129 (148)
T PRK09438         81 FPHWRHRYAPGVTRNTEHWFCLAL-PHERP--V-VLTEHLAYQWLDAREAAAL  129 (148)
T ss_pred             chhhhhccccccCCceeEEEEEec-CCCCc--c-ccCcccceeeCCHHHHHHH
Confidence            0       1112244566777653 32211  2 2358899999999999874

>cd04682 Nudix_Hydrolase_23 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.70  E-value=8.7e-17  Score=131.52  Aligned_cols=104  Identities=16%  Similarity=0.280  Sum_probs=75.7

Q ss_pred             EEEEEEEeCCCCEEEEEEeeC------CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccc--eeeeeeeeecccCeEE
Q 020742          109 VTGAIILDETYERCILVKGWK------GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSK--LLNKDEFIEKIFGQQR  180 (322)
Q Consensus       109 v~g~Iv~~~~~~kvLLvrr~~------~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~--l~~~~~~~~~~~~~~~  180 (322)
                      |+++++.++  ++|||++|.+      .|.|+||||+++.||++.+||+||++||||+++..  +.....+. .......
T Consensus         3 v~~~~~~~~--g~vLl~~r~~~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~-~~~~~~~   79 (122)
T cd04682           3 VALALLIGD--GRLLLQLRDDKPGIPYPGHWDLPGGHREGGETPLECVLRELLEEIGLTLPESRIPWFRVYP-SASPPGT   79 (122)
T ss_pred             eEEEEEEcC--CEEEEEEccCCCCCCCCCcEeCCCccccCCCCHHHHHHHHHHHHhCCcccccccceeEecc-cCCCCce
Confidence            456666665  4999999864      48999999999999999999999999999999863  22222222 2233455


Q ss_pred             EEEEEEEeecCCCCCCCCCccceeeEEEEeccccccc
Q 020742          181 VRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  217 (322)
Q Consensus       181 ~~~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~  217 (322)
                      .++|.+...... . .....+|+.++.|++++++...
T Consensus        80 ~~~f~~~~~~~~-~-~~~~~~E~~~~~W~~~~el~~~  114 (122)
T cd04682          80 EHVFVVPLTARE-D-AILFGDEGQALRLMTVEEFLAH  114 (122)
T ss_pred             EEEEEEEEecCC-C-ccccCchhheeecccHHHHhhc
Confidence            667777655432 1 2345688999999999999764

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03427 MTH1 MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily

Probab=99.70  E-value=1.2e-16  Score=132.85  Aligned_cols=104  Identities=25%  Similarity=0.362  Sum_probs=75.2

Q ss_pred             cEEEEEEEeCCCCEEEEEEeeC---CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeeeee--cc-cCeEEE
Q 020742          108 PVTGAIILDETYERCILVKGWK---GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIE--KI-FGQQRV  181 (322)
Q Consensus       108 ~v~g~Iv~~~~~~kvLLvrr~~---~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~~~--~~-~~~~~~  181 (322)
                      +++.+++.+++  ++||++|..   .+.|.+|||+++.||++.+||+||++||||+++.....+..+..  .. ......
T Consensus         2 ~~~~~~i~~~~--~vLL~~r~~~~~~~~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~   79 (137)
T cd03427           2 LTTLCFIKDPD--KVLLLNRKKGPGWGGWNGPGGKVEPGETPEECAIRELKEETGLTIDNLKLVGIIKFPFPGEEERYGV   79 (137)
T ss_pred             eEEEEEEEECC--EEEEEEecCCCCCCeEeCCceeCCCCCCHHHHHHHHHHHhhCeEeecceEEEEEEEEcCCCCcEEEE
Confidence            35567777763  899999886   68999999999999999999999999999999887554444322  11 133455


Q ss_pred             EEEEEEeecCCCCCCCCCccceeeEEEEeccccccc
Q 020742          182 RLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  217 (322)
Q Consensus       182 ~~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~  217 (322)
                      ++|.+....+.    +....|..++.|+++++++.+
T Consensus        80 ~~f~~~~~~~~----~~~~~e~~~~~W~~~~el~~~  111 (137)
T cd03427          80 FVFLATEFEGE----PLKESEEGILDWFDIDDLPLL  111 (137)
T ss_pred             EEEEECCcccc----cCCCCccccceEEcHhhcccc
Confidence            55655433322    223456678999999999863

MTH1, the mammalian counterpart of MutT, hydrolyzes oxidized purine nucleoside triphosphates, such as 8-oxo-dGTP and 2-hydroxy-ATP, to monophosphates, thereby preventing the incorporation of such oxygen radicals during replication. This is an important step in the repair mechanism in genomic and mitochondrial DNA. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity, and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. MTH1 is predominantly localized in the cytoplasm and mitochondria. Structurally, this enzyme adopts a similar fold to MutT despite low sequence similarity outside the conserved nudix motif. The most distinctive structural difference between MutT and MTH1 is the presence of a beta-hairpin, which is absent in MutT. This results in a m

>cd04690 Nudix_Hydrolase_31 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.70  E-value=1.4e-16  Score=129.06  Aligned_cols=101  Identities=28%  Similarity=0.379  Sum_probs=74.4

Q ss_pred             EEEEEEeCCCCEEEEEEeeCCCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccc--eeeeeeeeecc----cCeEEEEE
Q 020742          110 TGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSK--LLNKDEFIEKI----FGQQRVRL  183 (322)
Q Consensus       110 ~g~Iv~~~~~~kvLLvrr~~~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~--l~~~~~~~~~~----~~~~~~~~  183 (322)
                      +++++++.++ ++||+|+...+.|.||||++++||++.+||+||++||||+++..  +..+..+....    ......++
T Consensus         3 ~~~~v~~~~~-~vLl~~r~~~~~w~~PgG~ve~~Es~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (118)
T cd04690           3 AAALILVRDG-RVLLVRKRGTDVFYLPGGKIEAGETPLQALIRELSEELGLDLDPDSLEYLGTFRAPAANEPGVDVRATV   81 (118)
T ss_pred             EEEEEEecCC-eEEEEEECCCCcEECCCCccCCCCCHHHHHHHHHHHHHCCccChhheEEEEEEecccccCCCcEEEEEE
Confidence            4555555554 99999987788999999999999999999999999999998876  66665543321    11234555


Q ss_pred             EEEEeecCCCCCCCCCccceeeEEEEecccccc
Q 020742          184 YIIAGVRDDTAFAPQTKKEISEIAWQRLDELQP  216 (322)
Q Consensus       184 y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~  216 (322)
                      |.+.. ..    .....+|+.++.|++++++..
T Consensus        82 f~~~~-~~----~~~~~~e~~~~~W~~~~e~~~  109 (118)
T cd04690          82 YVAEL-TG----EPVPAAEIEEIRWVDYDDPAD  109 (118)
T ss_pred             EEEcc-cC----CcCCCchhhccEEecHHHccc
Confidence            65543 22    133457889999999999855

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03429 NADH_pyrophosphatase NADH pyrophosphatase, a member of the Nudix hydrolase superfamily, catalyzes the cleavage of NADH into reduced nicotinamide mononucleotide (NMNH) and AMP

Probab=99.70  E-value=7.9e-17  Score=133.83  Aligned_cols=105  Identities=19%  Similarity=0.250  Sum_probs=77.3

Q ss_pred             cEEEEEEEeCCCCEEEEEEeeC--CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeeeeecccCeEEEEEEE
Q 020742          108 PVTGAIILDETYERCILVKGWK--GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQQRVRLYI  185 (322)
Q Consensus       108 ~v~g~Iv~~~~~~kvLLvrr~~--~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~~~~~~~~~~~~~y~  185 (322)
                      +++.+.+.+++ +++||++|.+  .+.|++|||+++.||++.+||+||++||||+++..+..+..+.. ...+..+..|+
T Consensus         1 ~~v~i~l~~~~-~~vLL~~r~~~~~~~w~lPgG~ie~gEt~~~aA~REl~EEtGl~~~~~~~l~~~~~-~~~~~~~~~f~   78 (131)
T cd03429           1 PAVIVLVIDGG-DRILLARQPRFPPGMYSLLAGFVEPGESLEEAVRREVKEEVGIRVKNIRYVGSQPW-PFPSSLMLGFT   78 (131)
T ss_pred             CeEEEEEEeCC-CEEEEEEecCCCCCcCcCCcccccCCCCHHHHHhhhhhhccCceeeeeEEEeecCC-CCCceEEEEEE
Confidence            35566667765 4999999976  78999999999999999999999999999999987665544321 12234455565


Q ss_pred             EEeecCCCCCCCCCccceeeEEEEeccccccc
Q 020742          186 IAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  217 (322)
Q Consensus       186 ~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~  217 (322)
                      +.....  .. ....+|+.++.|++++++.++
T Consensus        79 ~~~~~~--~~-~~~~~E~~~~~w~~~~el~~~  107 (131)
T cd03429          79 AEADSG--EI-VVDDDELEDARWFSRDEVRAA  107 (131)
T ss_pred             EEEcCC--cc-cCCchhhhccEeecHHHHhhc
Confidence            543322  22 234578899999999998774

Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity. Members of this family are also recognized by the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. A block of 8 conserved amino acids downstream of the nudix motif is thought to give NADH pyrophosphatase its specificity for NADH. NADH pyrophosphatase forms a dimer.

>cd04667 Nudix_Hydrolase_10 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.69  E-value=2.9e-16  Score=126.47  Aligned_cols=98  Identities=31%  Similarity=0.453  Sum_probs=71.8

Q ss_pred             EEEEEeCCCCEEEEEEeeCCCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeeeeecccCeEEEEEEEEEeec
Q 020742          111 GAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQQRVRLYIIAGVR  190 (322)
Q Consensus       111 g~Iv~~~~~~kvLLvrr~~~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~~~~~~~~~~~~~y~~~~~~  190 (322)
                      ++|+.+ + +++||+++.. +.|.+|||+++.||++.+||.||++||||+++..+..+..+..   .....++|.+. ..
T Consensus         4 ~~i~~~-~-~~vLlv~r~~-~~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~---~~~~~~~f~~~-~~   76 (112)
T cd04667           4 TVICRR-G-GRVLLVRKSG-SRWALPGGKIEPGETPLQAARRELQEETGLQGLDLLYLFHVDG---GSTRHHVFVAS-VP   76 (112)
T ss_pred             EEEEec-C-CEEEEEEcCC-CcEeCCCCcCCCCCCHHHHHHHHHHHHhCCcccceEEEEEEeC---CCEEEEEEEEE-cC
Confidence            344444 4 3999999874 8999999999999999999999999999999877665554422   23344555553 33


Q ss_pred             CCCCCCCCCccceeeEEEEeccccccc
Q 020742          191 DDTAFAPQTKKEISEIAWQRLDELQPA  217 (322)
Q Consensus       191 ~~~~~~~~~~~Ei~~~~Wv~ldeL~~~  217 (322)
                      ...  .....+|+.++.|++++++.++
T Consensus        77 ~~~--~~~~~~e~~~~~W~~~~el~~~  101 (112)
T cd04667          77 PSA--QPKPSNEIADCRWLSLDALGDL  101 (112)
T ss_pred             CcC--CCCCchheeEEEEecHHHhhhc
Confidence            221  2234578899999999999874

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PF00293 NUDIX: NUDIX domain; InterPro: IPR000086 The generic name 'NUDIX hydrolases' (NUcleoside DIphosphate linked to some other moiety X) has been coined for this domain family []

Probab=99.68  E-value=2.9e-16  Score=128.80  Aligned_cols=108  Identities=30%  Similarity=0.442  Sum_probs=80.0

Q ss_pred             cEEEEEEEeCCCCEEEEEEeeCC-----CcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeee--eeecccC--e
Q 020742          108 PVTGAIILDETYERCILVKGWKG-----SSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDE--FIEKIFG--Q  178 (322)
Q Consensus       108 ~v~g~Iv~~~~~~kvLLvrr~~~-----~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~--~~~~~~~--~  178 (322)
                      +++++|+++.++ +|||+++.+.     +.|.+|||+++.||++.+||+||+.||||+++........  +......  .
T Consensus         3 ~~v~~ii~~~~~-~vLl~~r~~~~~~~~~~~~~pgG~i~~~E~~~~aa~REl~EE~g~~~~~~~~~~~~~~~~~~~~~~~   81 (134)
T PF00293_consen    3 RAVGVIIFNEDG-KVLLIKRSRSPITFPGYWELPGGGIEPGESPEEAARRELKEETGLDVSPLELLGLFSYPSPSGDPEG   81 (134)
T ss_dssp             EEEEEEEEETTT-EEEEEEESTTSSSSTTEEESSEEEECTTSHHHHHHHHHHHHHHSEEEEEEEEEEEEEEEETTTESSE
T ss_pred             CEEEEEEEeCCc-EEEEEEecCCCCCCCCeEecceeeEEcCCchhhhHHhhhhhcccceecccccceeeeecccCCCccc
Confidence            578899999986 9999999873     7999999999999999999999999999999865433332  2222222  3


Q ss_pred             EEEEEEEEEeecCCCCCCCCCccceeeEEEEeccccccc
Q 020742          179 QRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  217 (322)
Q Consensus       179 ~~~~~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~  217 (322)
                      ....+|.+..........+ ...|+.++.|++++++.++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~-~~~e~~~~~W~~~~el~~~  119 (134)
T PF00293_consen   82 EIVIFFIAELPSEQSEIQP-QDEEISEVKWVPPDELLEL  119 (134)
T ss_dssp             EEEEEEEEEEEEEESECHT-TTTTEEEEEEEEHHHHHHH
T ss_pred             EEEEEEEEEEeCCccccCC-CCccEEEEEEEEHHHhhhc
Confidence            5555665554443322223 2349999999999999873

The family can be divided into a number of subgroups, of which MutT anti- mutagenic activity represents only one type; most of the rest hydrolyse diverse nucleoside diphosphate derivatives (including ADP-ribose, GDP- mannose, TDP-glucose, NADH, UDP-sugars, dNTP and NTP).; GO: 0016787 hydrolase activity; PDB: 3FJY_A 3MGM_A 2XSQ_A 3COU_A 2O5F_A 1Q27_A 3F6A_A 3E57_B 3SON_B 2GT4_C ....

>TIGR00052 nudix-type nucleoside diphosphatase, YffH/AdpP family

Probab=99.68  E-value=2.7e-16  Score=138.41  Aligned_cols=126  Identities=16%  Similarity=0.175  Sum_probs=92.6

Q ss_pred             ccEEEEEEEeCCCCEEEEEEeeC---------CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeeeee-ccc
Q 020742          107 VPVTGAIILDETYERCILVKGWK---------GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIE-KIF  176 (322)
Q Consensus       107 v~v~g~Iv~~~~~~kvLLvrr~~---------~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~~~-~~~  176 (322)
                      -+++++|+++.+.++|||+++++         ...|+||||+++.||++++||+||++||||+.+..+..+..+.. +..
T Consensus        44 ~~~v~vl~~~~~~~~vlLvrq~R~~~~~~~~~~~~lelPaG~ve~gE~~~~aA~REl~EEtG~~~~~~~~~~~~~~~~g~  123 (185)
T TIGR00052        44 GNAAAVLLYDPKKDTVVLIEQFRIAAYVNGEEPWLLELSAGMVEKGESPEDVARREAIEEAGYQVKNLRKLLSFYSSPGG  123 (185)
T ss_pred             CCeEEEEEEECCCCEEEEEECceeeeeecCCcceEEEECcEecCCCCCHHHHHHHHccccccceecceEEEEEEEcCCCC
Confidence            34667777766545999999976         24789999999999999999999999999999988777766543 456


Q ss_pred             CeEEEEEEEEEeecCCC-CCCCCCccceeeEEEEeccccccc--CCCcc-chhhhhhhhh
Q 020742          177 GQQRVRLYIIAGVRDDT-AFAPQTKKEISEIAWQRLDELQPA--SDDVI-SHGVTGLKLY  232 (322)
Q Consensus       177 ~~~~~~~y~~~~~~~~~-~~~~~~~~Ei~~~~Wv~ldeL~~~--~~~~~-~~~~~~~~~~  232 (322)
                      ....+++|++....... .....+++|...+.|++++++.++  ++++. ++++.++.+|
T Consensus       124 ~~~~~~~f~a~~~~~~~~~~~~~~~~E~ie~~~~~~~e~~~~~~~G~i~d~~t~~al~~~  183 (185)
T TIGR00052       124 VTELIHLFIAEVDDNQAAGIGGGADEEEIEVLHLVFSQALQWIKEGKIDNGKTVILLQWL  183 (185)
T ss_pred             CcEEEEEEEEEEchhhcCCCCCCCCccceEEEEeCHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence            67788888886433211 111223456677899999999884  66665 6666665443

>PRK15472 nucleoside triphosphatase NudI; Provisional

Probab=99.68  E-value=4e-16  Score=130.84  Aligned_cols=106  Identities=17%  Similarity=0.251  Sum_probs=68.2

Q ss_pred             cEEEEEEEeCCCCEEEEEEeeC-----CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeee-eee-------e-e
Q 020742          108 PVTGAIILDETYERCILVKGWK-----GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNK-DEF-------I-E  173 (322)
Q Consensus       108 ~v~g~Iv~~~~~~kvLLvrr~~-----~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~-~~~-------~-~  173 (322)
                      .++++|+.++  ++|||+||..     +|.|++|||+++.|||+.+||+||++||||+++...... ..+       . .
T Consensus         5 ~~~~~ii~~~--~~vLl~~R~~~~~~~~g~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~   82 (141)
T PRK15472          5 TIVCPLIQND--GAYLLCKMADDRGVFPGQWALSGGGVEPGERIEEALRREIREELGEQLLLTEITPWTFRDDIRTKTYA   82 (141)
T ss_pred             eEEEEEEecC--CEEEEEEecccCCCCCCceeCCcccCCCCCCHHHHHHHHHHHHHCCceeeeeeccccccccceeEEec
Confidence            3445555554  3999999754     489999999999999999999999999999986431100 001       0 0


Q ss_pred             cccCeEEEEEEEEEee-cCCCCCCCCCccceeeEEEEeccccccc
Q 020742          174 KIFGQQRVRLYIIAGV-RDDTAFAPQTKKEISEIAWQRLDELQPA  217 (322)
Q Consensus       174 ~~~~~~~~~~y~~~~~-~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~  217 (322)
                      .....+...+|++... .....  ....+|+.++.|+++++|+++
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~E~~~~~w~~~~el~~l  125 (141)
T PRK15472         83 DGRKEEIYMIYLIFDCVSANRD--VKINEEFQDYAWVKPEDLVHY  125 (141)
T ss_pred             CCCceeEEEEEEEEEeecCCCc--ccCChhhheEEEccHHHhccc
Confidence            1111122233322211 11112  223478999999999999985

>cd04693 Nudix_Hydrolase_34 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.68  E-value=1.9e-16  Score=130.34  Aligned_cols=104  Identities=21%  Similarity=0.261  Sum_probs=72.6

Q ss_pred             EEEEEEEeCCCCEEEEEEeeC-----CCcEEcc-cccCCCCCCHHHHHHHHHHHHhCCcccc--eeeeeeeeecccCeEE
Q 020742          109 VTGAIILDETYERCILVKGWK-----GSSWSFP-RGKKNKDEEDHACAIREVQEETGFDVSK--LLNKDEFIEKIFGQQR  180 (322)
Q Consensus       109 v~g~Iv~~~~~~kvLLvrr~~-----~~~w~fP-gG~ie~gEs~~eaA~REv~EETGl~v~~--l~~~~~~~~~~~~~~~  180 (322)
                      ++.++++++++ +|||++|..     +|.|++| ||+++.||++ +||+||++||||+++..  +..+..+.....+...
T Consensus         2 ~v~v~~~~~~g-~vLl~~R~~~~~~~pg~w~~p~GG~ve~gE~~-~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~   79 (127)
T cd04693           2 VVHVCIFNSKG-ELLLQKRSPNKDGWPGMWDLSVGGHVQAGETS-TAAEREVKEELGLELDFSELRPLFRYFFEAEGFDD   79 (127)
T ss_pred             eEEEEEEeCCC-eEEEEEccCCCCCCCCcccccCCCcCCCCCCH-HHHHHHHHHHhCCCcChhhcEEEEEEEeecCCeEE
Confidence            45677777764 999999864     4899998 8999999999 99999999999999763  4344444322212333


Q ss_pred             EEEEEEEeecCCCCCCCCCccceeeEEEEeccccccc
Q 020742          181 VRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  217 (322)
Q Consensus       181 ~~~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~  217 (322)
                      +.+|.+.....  .. ....+|+.++.|++++++.++
T Consensus        80 ~~~~~~~~~~~--~~-~~~~~E~~~~~w~~~~el~~~  113 (127)
T cd04693          80 YYLFYADVEIG--KL-ILQKEEVDEVKFVSKDEIDGL  113 (127)
T ss_pred             EEEEEecCccc--cc-ccCHHHhhhEEEeCHHHHHHH
Confidence            33443332222  11 234578999999999999874

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PRK15009 GDP-mannose pyrophosphatase NudK; Provisional

Probab=99.68  E-value=5.7e-16  Score=136.88  Aligned_cols=125  Identities=14%  Similarity=0.150  Sum_probs=94.9

Q ss_pred             ccEEEEEEEeCCCCEEEEEEeeCCC----------cEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeeee-ecc
Q 020742          107 VPVTGAIILDETYERCILVKGWKGS----------SWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFI-EKI  175 (322)
Q Consensus       107 v~v~g~Iv~~~~~~kvLLvrr~~~~----------~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~~-~~~  175 (322)
                      -.++++++++++.+++||+++++.+          .|++|+|.++.| ++++||+||+.||||+.+..+..+..++ .++
T Consensus        45 ~~~v~Vl~~~~~~~~vvLvrQyR~~v~~~~~~~~~~lElPAG~vd~~-~p~~aA~REL~EETGy~a~~~~~l~~~~~spG  123 (191)
T PRK15009         45 GNGATILLYNAKKKTVVLIRQFRVATWVNGNESGQLIETCAGLLDND-EPEVCIRKEAIEETGYEVGEVRKLFELYMSPG  123 (191)
T ss_pred             CCEEEEEEEECCCCEEEEEEcccccccccCCCCceEEEEeccccCCC-CHHHHHHHHHHHhhCCccceEEEeeEEEcCCc
Confidence            3567777787655699999999833          489999999975 6999999999999999999888877754 467


Q ss_pred             cCeEEEEEEEEEeecC-CCCCCCCCccceeeEEEEeccccccc--CCCcc-chhhhhhhhh
Q 020742          176 FGQQRVRLYIIAGVRD-DTAFAPQTKKEISEIAWQRLDELQPA--SDDVI-SHGVTGLKLY  232 (322)
Q Consensus       176 ~~~~~~~~y~~~~~~~-~~~~~~~~~~Ei~~~~Wv~ldeL~~~--~~~~~-~~~~~~~~~~  232 (322)
                      ...+.+++|++..... .......+++|..++.|++++++.++  ++++. ++++.++.++
T Consensus       124 ~s~e~~~lf~a~~~~~~~~~~~~~de~E~iev~~~~~~e~~~~i~~G~i~da~ti~al~~~  184 (191)
T PRK15009        124 GVTELIHFFIAEYSDSQRANAGGGVEDEDIEVLELPFSQALEMIKTGEIRDGKTVLLLNYL  184 (191)
T ss_pred             ccCcEEEEEEEEECchhcccCCCCCCCceEEEEEEcHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence            7889999999976422 11111235678889999999999985  66666 6666655433

>cd04686 Nudix_Hydrolase_27 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.67  E-value=5e-16  Score=128.97  Aligned_cols=106  Identities=23%  Similarity=0.256  Sum_probs=69.6

Q ss_pred             EEEEEEEeCCCCEEEEEEeeCCCcEEcccccCCCCCCHHHHHHHHHHHHhCCccc-ceeeeeeeee---c--c---cCeE
Q 020742          109 VTGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVS-KLLNKDEFIE---K--I---FGQQ  179 (322)
Q Consensus       109 v~g~Iv~~~~~~kvLLvrr~~~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~-~l~~~~~~~~---~--~---~~~~  179 (322)
                      .+++||++++  +|||+++.+.+.|.||||+++.||++.+||+||++||||+.+. ....+..+..   .  .   ..+.
T Consensus         2 ~~~~ii~~~~--~vLLv~~~~~~~w~lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~~   79 (131)
T cd04686           2 AVRAIILQGD--KILLLYTKRYGDYKFPGGGVEKGEDHIEGLIRELQEETGATNIRVIEKFGTYTERRPWRKPDADIFHM   79 (131)
T ss_pred             cEEEEEEECC--EEEEEEEcCCCcEECccccCCCCCCHHHHHHHHHHHHHCCcccccceEEEEEEeeccccCCCCceeEE
Confidence            4567777764  8999999876799999999999999999999999999999873 3323322211   1  1   1122


Q ss_pred             EEEEEEEEeecCCCCCCCCCccce---eeEEEEeccccccc
Q 020742          180 RVRLYIIAGVRDDTAFAPQTKKEI---SEIAWQRLDELQPA  217 (322)
Q Consensus       180 ~~~~y~~~~~~~~~~~~~~~~~Ei---~~~~Wv~ldeL~~~  217 (322)
                      ..++|.+ .+.........+..|.   ..+.|++++++...
T Consensus        80 ~~~~~~~-~~~~~~~~~~~~~~e~~~~~~~~W~~~~ea~~~  119 (131)
T cd04686          80 ISYYYLC-EVDAELGAQQLEDYEAELGMKPIWINIHEAIEH  119 (131)
T ss_pred             EEEEEEE-EEcCCcCCcccchhhHhcCCCcEEecHHHHHHh
Confidence            3344544 4433221111222332   35899999999873

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04697 Nudix_Hydrolase_38 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.67  E-value=3.4e-16  Score=128.97  Aligned_cols=104  Identities=18%  Similarity=0.211  Sum_probs=77.9

Q ss_pred             EEEEEEEeCCCCEEEEEEeeC-----CCcEEc-ccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeeeeeccc-CeEEE
Q 020742          109 VTGAIILDETYERCILVKGWK-----GSSWSF-PRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIF-GQQRV  181 (322)
Q Consensus       109 v~g~Iv~~~~~~kvLLvrr~~-----~~~w~f-PgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~~~~~~-~~~~~  181 (322)
                      ++.+++++.++ +|||++|..     .|.|++ |||+++.||++.+||+||++||||+++..+..+..+..... .....
T Consensus         2 ~~~v~i~~~~~-~iLl~~R~~~~~~~~g~w~~~~GG~ve~gE~~~~aa~REl~EEtGl~~~~l~~~~~~~~~~~~~~~~~   80 (126)
T cd04697           2 ATYIFVFNSEG-KLCVHKRTLTKDWCPGYWDIAFGGVVQAGESYLQNAQRELEEELGIDGVQLTPLGLFYYDTDGNRVWG   80 (126)
T ss_pred             eEEEEEEcCCC-eEEEEECCCCCCCCCCcccCcCCcccCCCCCHHHHHHHHHHHHHCCCccccEEeeEEEecCCCceEEE
Confidence            45678888874 999999864     678999 69999999999999999999999999987766665543222 23344


Q ss_pred             EEEEEEeecCCCCCCCCCccceeeEEEEeccccccc
Q 020742          182 RLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  217 (322)
Q Consensus       182 ~~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~  217 (322)
                      ++|.+.. ...  . ....+|+.++.|++++++.++
T Consensus        81 ~~f~~~~-~~~--~-~~~~~E~~~~~w~~~~el~~~  112 (126)
T cd04697          81 KVFSCVY-DGP--L-KLQEEEVEEITWLSINEILQF  112 (126)
T ss_pred             EEEEEEE-CCC--C-CCCHhHhhheEEcCHHHHHHH
Confidence            5666543 322  2 234578899999999999874

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03428 Ap4A_hydrolase_human_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily

Probab=99.67  E-value=3.3e-16  Score=128.93  Aligned_cols=106  Identities=24%  Similarity=0.353  Sum_probs=75.8

Q ss_pred             cEEEEEEEeCCC--CEEEEEEeeCCCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeeee---ec--ccCeEE
Q 020742          108 PVTGAIILDETY--ERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFI---EK--IFGQQR  180 (322)
Q Consensus       108 ~v~g~Iv~~~~~--~kvLLvrr~~~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~~---~~--~~~~~~  180 (322)
                      ..+|+|+++.+.  .++||+++.. +.|.+|||+++.|||+.+||+||++||||+++..+..+..+.   ..  ......
T Consensus         3 ~~~g~vi~~~~~~~~~vLl~~~~~-~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~   81 (130)
T cd03428           3 RSAGAIIYRRLNNEIEYLLLQASY-GHWDFPKGHVEPGEDDLEAALRETEEETGITAEQLFIVLGFKETLNYQVRGKLKT   81 (130)
T ss_pred             eEEEEEEEEecCCCceEEEEEccC-CcCcCCcCCCCCCCCHHHHHHHHHHHHHCCChhhhhhhccceeEEEccccCcceE
Confidence            457777776543  2699999886 999999999999999999999999999999988754432211   11  112345


Q ss_pred             EEEEEEEeecCCCCCCCCCccceeeEEEEeccccccc
Q 020742          181 VRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  217 (322)
Q Consensus       181 ~~~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~  217 (322)
                      +++|.+... .......  .+|+.++.|++++++.++
T Consensus        82 ~~~f~~~~~-~~~~~~~--~~E~~~~~W~~~~e~~~~  115 (130)
T cd03428          82 VTYFLAELR-PDVEVKL--SEEHQDYRWLPYEEALKL  115 (130)
T ss_pred             EEEEEEEeC-CCCcccc--ccceeeEEeecHHHHHHH
Confidence            556665443 2222222  278999999999999874

Ap4A hydrolases are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one subfamily and fungi/animals/archaea enzymes, represented by this subfamily, fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val) that functions as a metal binding and

>cd04699 Nudix_Hydrolase_39 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.67  E-value=5.8e-16  Score=126.80  Aligned_cols=105  Identities=27%  Similarity=0.418  Sum_probs=72.8

Q ss_pred             cEEEEEEEeCCCCEEEEEEeeC-----CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeee-eeeecccC-eEE
Q 020742          108 PVTGAIILDETYERCILVKGWK-----GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKD-EFIEKIFG-QQR  180 (322)
Q Consensus       108 ~v~g~Iv~~~~~~kvLLvrr~~-----~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~-~~~~~~~~-~~~  180 (322)
                      .++++||.+++ +++||+||..     +|.|+||||+++.||++.+||+||++||||+++....... .+...... +..
T Consensus         2 ~~v~~vv~~~~-~~iLl~kr~~~~~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~   80 (129)
T cd04699           2 VAVAALIVKDV-GRILILKRSKDERTAPGKWELPGGKVEEGETFEEALKREVYEETGLTVTPFLRYPSTVTHEDSGVYNV   80 (129)
T ss_pred             ceEEEEEECCC-CcEEEEEecCCCCCCCCcCcCCccCccCCCCHHHHHHHHHHHhhCcEEEeeeeeeEEEEEcCCCEEEE
Confidence            45677777775 4899999875     5789999999999999999999999999999887644322 22222221 233


Q ss_pred             E-EEEEEEeecCCCCCCCCCccceeeEEEEeccccccc
Q 020742          181 V-RLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  217 (322)
Q Consensus       181 ~-~~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~  217 (322)
                      + .+|.+.....    .....+|+.++.|++++++..+
T Consensus        81 ~~~~~~~~~~~~----~~~~~~e~~~~~w~~~~el~~~  114 (129)
T cd04699          81 IYLVFVCEALSG----AVKLSDEHEEYAWVTLEELAIL  114 (129)
T ss_pred             EEEEEEeeecCC----cccCChhheEEEEecHHHhhhh
Confidence            3 3333322222    1223568889999999998653

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03426 CoAse Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes

Probab=99.67  E-value=4.1e-16  Score=133.57  Aligned_cols=107  Identities=19%  Similarity=0.150  Sum_probs=76.4

Q ss_pred             EEEEEEEeCC-CCEEEEEEeeC-----CCcEEcccccCCCC-CCHHHHHHHHHHHHhCCcccceeeeeeeee-cccCeEE
Q 020742          109 VTGAIILDET-YERCILVKGWK-----GSSWSFPRGKKNKD-EEDHACAIREVQEETGFDVSKLLNKDEFIE-KIFGQQR  180 (322)
Q Consensus       109 v~g~Iv~~~~-~~kvLLvrr~~-----~~~w~fPgG~ie~g-Es~~eaA~REv~EETGl~v~~l~~~~~~~~-~~~~~~~  180 (322)
                      ++.+++.+.+ .++|||+||..     +|.|+||||+++.| |++.+||+||++||||+++..+..+..+.. .......
T Consensus         4 av~v~l~~~~~~~~vLL~~R~~~~~~~~g~w~lPGG~ve~gdEs~~eaa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~   83 (157)
T cd03426           4 AVLVLLVEREGELRVLLTKRASHLRSHPGQVAFPGGKVDPGDEDPVATALREAEEEIGLPPDSVEVLGRLPPYYTRSGFV   83 (157)
T ss_pred             EEEEEEEeCCCceEEEEEEcccccccCCCcEECCCCCcCCCcCCHHHHHHHHHHHHhCCCccceEEEEECCCccccCCCE
Confidence            4455556554 24999999865     58999999999999 999999999999999999987655544321 1222344


Q ss_pred             EEEEEEEeecCCCCCCCCCccceeeEEEEeccccccc
Q 020742          181 VRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  217 (322)
Q Consensus       181 ~~~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~  217 (322)
                      +++|++.... ..... .+++|+.++.|++++++.+.
T Consensus        84 v~~~~~~~~~-~~~~~-~~~~E~~~~~W~~~~el~~~  118 (157)
T cd03426          84 VTPVVGLVPP-PLPLV-LNPDEVAEVFEVPLSFLLDP  118 (157)
T ss_pred             EEEEEEEECC-CCCCC-CCHHHhheeEEEcHHHHhCc
Confidence            5556554322 22222 34569999999999999885

The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules.

>PRK15393 NUDIX hydrolase YfcD; Provisional

Probab=99.66  E-value=7.8e-16  Score=134.88  Aligned_cols=127  Identities=17%  Similarity=0.222  Sum_probs=86.5

Q ss_pred             ccEEEEEEEeCCCCEEEEEEeeC-----CCcE-EcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeeeee-cccCeE
Q 020742          107 VPVTGAIILDETYERCILVKGWK-----GSSW-SFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIE-KIFGQQ  179 (322)
Q Consensus       107 v~v~g~Iv~~~~~~kvLLvrr~~-----~~~w-~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~~~-~~~~~~  179 (322)
                      ++++.++|++++ ++|||++|..     +|.| .+|||++++||++.+||+||++||||+.+..+..++.+.. ......
T Consensus        37 h~~~~v~v~~~~-g~iLL~~R~~~~~~~pg~~~~~pGG~ve~GEs~~eAA~REL~EEtGl~~~~~~~~~~~~~~~~~~~~  115 (180)
T PRK15393         37 HRATYIVVHDGM-GKILVQRRTETKDFLPGMLDATAGGVVQAGEQLLESARREAEEELGIAGVPFAEHGQFYFEDENCRV  115 (180)
T ss_pred             eEEEEEEEECCC-CeEEEEEeCCCCCCCCCcccccCCCcCCCCCCHHHHHHHHHHHHHCCCCccceeceeEEecCCCceE
Confidence            466777888876 4999999865     3455 5899999999999999999999999998766554444322 222222


Q ss_pred             EEEEEEEEeecCCCCCCCCCccceeeEEEEecccccccCCCccchhhhhhhhhhhhhhHHHHHHHHHhcCC
Q 020742          180 RVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPASDDVISHGVTGLKLYMVAPFLASLKKWISAHKP  250 (322)
Q Consensus       180 ~~~~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~~~~~~~~~~~~~~~~~v~pf~~~L~~wi~~~~~  250 (322)
                      ...+|.+. ....   .....+|+.++.|++++++..+...+.            ...+..+..|+.+...
T Consensus       116 ~~~~f~~~-~~~~---~~~~~~E~~~~~W~~~~el~~~~~~~~------------~~~~~~l~~~l~~~~~  170 (180)
T PRK15393        116 WGALFSCV-SHGP---FALQEEEVSEVCWMTPEEITARCDEFT------------PDSLKALALWLTRNAK  170 (180)
T ss_pred             EEEEEEEE-eCCC---CCCChHHeeEEEECCHHHHhhhhhhcC------------ccHHHHHHHHHHhhcc
Confidence            33455443 2322   122468999999999999987532211            2345777778776543

>cd04664 Nudix_Hydrolase_7 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.66  E-value=6.3e-16  Score=127.42  Aligned_cols=105  Identities=20%  Similarity=0.186  Sum_probs=74.9

Q ss_pred             EEEEEEEeC--CCCEEEEEEeeC--CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeee-----eecc-c-C
Q 020742          109 VTGAIILDE--TYERCILVKGWK--GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEF-----IEKI-F-G  177 (322)
Q Consensus       109 v~g~Iv~~~--~~~kvLLvrr~~--~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~-----~~~~-~-~  177 (322)
                      ++.+++++.  + ++|||++|.+  ++.|.+|||+++.||++.+||+||++||||+.+..+..+...     .... . .
T Consensus         3 ~~~v~~~~~~~~-~~vLL~~r~~~~~~~w~~PgG~ve~~Es~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~   81 (129)
T cd04664           3 SVLVVPYRLTGE-GRVLLLRRSDKYAGFWQSVTGGIEDGESPAEAARREVAEETGLDPERLTLLDRGASIAFVEFTDNGR   81 (129)
T ss_pred             EEEEEEEEeCCC-CEEEEEEeCCCCCCcccccCcccCCCCCHHHHHHHHHHHHHCCChhheEEEeecccccccccCCCce
Confidence            567777776  5 4999999987  799999999999999999999999999999998553332221     1111 1 1


Q ss_pred             eEEEEEEEEEeecCCCCCCCCCccceeeEEEEeccccccc
Q 020742          178 QQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  217 (322)
Q Consensus       178 ~~~~~~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~  217 (322)
                      ....++|++.. ....  ....++|+.++.|++++++.++
T Consensus        82 ~~~~~~f~~~~-~~~~--~~~~~~E~~~~~W~~~~e~~~~  118 (129)
T cd04664          82 VWTEHPFAFHL-PSDA--VVTLDWEHDAFEWVPPEEAAAL  118 (129)
T ss_pred             EEEEeEEEEEc-CCCC--cccCCccccccEecCHHHHHHH
Confidence            23445565543 3322  1234578899999999999863

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s

>cd04695 Nudix_Hydrolase_36 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.65  E-value=2.4e-15  Score=124.68  Aligned_cols=96  Identities=23%  Similarity=0.333  Sum_probs=68.4

Q ss_pred             CCEEEEEEeeC--CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceee---eeeeeecccCe-EEEEEEEEEeecCC
Q 020742          119 YERCILVKGWK--GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLN---KDEFIEKIFGQ-QRVRLYIIAGVRDD  192 (322)
Q Consensus       119 ~~kvLLvrr~~--~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~---~~~~~~~~~~~-~~~~~y~~~~~~~~  192 (322)
                      .++|||++|..  +|.|.+|||+++.|||+.+||+||++||||+++..+..   +..++...... ....+|++......
T Consensus        13 ~~~vLl~~r~~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~   92 (131)
T cd04695          13 ETKVLLLKRVKTLGGFWCHVAGGVEAGETAWQAALRELKEETGISLPELYNADYLEQFYEANDNRILMAPVFVGFVPPHQ   92 (131)
T ss_pred             CCEEEEEEecCCCCCcEECCcccccCCCCHHHHHHHHHHHHhCCCccccccccceeeEeecCCceEEEEEEEEEEecCCC
Confidence            35999999987  89999999999999999999999999999999875422   12222222211 23345555433222


Q ss_pred             CCCCCCCccceeeEEEEeccccccc
Q 020742          193 TAFAPQTKKEISEIAWQRLDELQPA  217 (322)
Q Consensus       193 ~~~~~~~~~Ei~~~~Wv~ldeL~~~  217 (322)
                       .  ....+|+.++.|++++++..+
T Consensus        93 -~--~~~~~E~~~~~W~~~~e~~~~  114 (131)
T cd04695          93 -E--VVLNHEHTEYRWCSFAEALEL  114 (131)
T ss_pred             -c--cccCchhcccEecCHHHHHHh
Confidence             1  222468899999999999874

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PRK10546 pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase; Provisional

Probab=99.65  E-value=1.6e-15  Score=125.81  Aligned_cols=104  Identities=18%  Similarity=0.265  Sum_probs=71.5

Q ss_pred             ccEEEEEEEeCCCCEEEEEEeeC----CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeeeee-cccCeEEE
Q 020742          107 VPVTGAIILDETYERCILVKGWK----GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIE-KIFGQQRV  181 (322)
Q Consensus       107 v~v~g~Iv~~~~~~kvLLvrr~~----~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~~~-~~~~~~~~  181 (322)
                      +.++++|+.++  ++|||+||..    .|.|+||||+++.||++.+||+||++||||+++.....+..+.. .......+
T Consensus         4 ~~~~~~ii~~~--~~vLL~~R~~~~~~~g~w~~PgG~ve~gE~~~~a~~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~   81 (135)
T PRK10546          4 IDVVAAIIERD--GKILLAQRPAHSDQAGLWEFAGGKVEPGESQPQALIRELREELGIEATVGEYVASHQREVSGRRIHL   81 (135)
T ss_pred             EEEEEEEEecC--CEEEEEEccCCCCCCCcEECCcccCCCCCCHHHHHHHHHHHHHCCccccceeEEEEEEecCCcEEEE
Confidence            45566666544  3899999865    58999999999999999999999999999999865332322211 11222234


Q ss_pred             EEEEEEeecCCCCCCCCCccceeeEEEEeccccccc
Q 020742          182 RLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  217 (322)
Q Consensus       182 ~~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~  217 (322)
                      ++|.+....+.    + ...|..++.|++++++..+
T Consensus        82 ~~~~~~~~~~~----~-~~~e~~~~~W~~~~el~~~  112 (135)
T PRK10546         82 HAWHVPDFHGE----L-QAHEHQALVWCTPEEALRY  112 (135)
T ss_pred             EEEEEEEecCc----c-cccccceeEEcCHHHcccC
Confidence            45555433222    1 1245678999999999874

>cd04661 MRP_L46 Mitochondrial ribosomal protein L46 (MRP L46) is a component of the large subunit (39S) of the mammalian mitochondrial ribosome and a member of the Nudix hydrolase superfamily

Probab=99.62  E-value=2.2e-15  Score=125.32  Aligned_cols=94  Identities=17%  Similarity=0.244  Sum_probs=67.0

Q ss_pred             CEEEEEEeeC--CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccce-ee---eeeeee--c-c-----cCeEEEEEEE
Q 020742          120 ERCILVKGWK--GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKL-LN---KDEFIE--K-I-----FGQQRVRLYI  185 (322)
Q Consensus       120 ~kvLLvrr~~--~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l-~~---~~~~~~--~-~-----~~~~~~~~y~  185 (322)
                      .++||+|+..  .+.|.||||+++.|||+.+||+||++||||+.+... ..   ...+..  . .     ..+..+.+|.
T Consensus        13 ~~~Llvk~~~~~~g~W~fPgG~ve~gEt~~eaa~REl~EEtGl~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~   92 (132)
T cd04661          13 TLVLLVQQKVGSQNHWILPQGKREEGETLRQTAERTLKELCGNNLKAKFYGNAPVGFYKYKYPKAVRNEGIVGAKVFFFK   92 (132)
T ss_pred             cEEEEEEeecCCCCeeECCcccccCCCCHHHHHHHHHHHhhCCCceEEEEEecCcEEEEEecCcccccccCcccEEEEEE
Confidence            4899999865  479999999999999999999999999999987642 11   111111  0 0     1123456666


Q ss_pred             EEeecCCCCCCCCCccceeeEEEEeccccccc
Q 020742          186 IAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  217 (322)
Q Consensus       186 ~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~  217 (322)
                      +....+.    +....|+.+++|+++++|+.+
T Consensus        93 ~~~~~g~----~~~~~e~~~~~W~~~~el~~~  120 (132)
T cd04661          93 ARYMSGQ----FELSQNQVDFKWLAKEELQKY  120 (132)
T ss_pred             EEEecCc----cccCCCcceeEecCHHHHHhh
Confidence            6655543    222478899999999999874

MRPs are thought to be involved in the maintenance of the mitochondrial DNA. In general, members of the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for activity and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. MRP L46 appears to contain a modified nudix motif.

>PRK10776 nucleoside triphosphate pyrophosphohydrolase; Provisional

Probab=99.62  E-value=7.8e-15  Score=119.96  Aligned_cols=105  Identities=20%  Similarity=0.296  Sum_probs=72.3

Q ss_pred             ccEEEEEEEeCCCCEEEEEEeeC----CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeeeee-cccCeEEE
Q 020742          107 VPVTGAIILDETYERCILVKGWK----GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIE-KIFGQQRV  181 (322)
Q Consensus       107 v~v~g~Iv~~~~~~kvLLvrr~~----~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~~~-~~~~~~~~  181 (322)
                      +.++++||.+++ +++||+||..    +|.|+||||+++.||++.+||.||+.||||+++.....+..... .......+
T Consensus         4 ~~~~~~ii~~~~-~~vll~rR~~~~~~~g~w~~PgG~~~~gE~~~~a~~Re~~EE~gl~~~~~~~~~~~~~~~~~~~~~~   82 (129)
T PRK10776          4 LQIAVGIIRNPN-NEIFITRRAADAHMAGKWEFPGGKIEAGETPEQALIRELQEEVGITVQHATLFEKLEYEFPDRHITL   82 (129)
T ss_pred             eEEEEEEEECCC-CEEEEEEecCCCCCCCeEECCceecCCCCCHHHHHHHHHHHHHCCceecceEEEEEEeeCCCcEEEE
Confidence            345566777765 4999999875    58999999999999999999999999999998765333332211 11222334


Q ss_pred             EEEEEEeecCCCCCCCCCccceeeEEEEeccccccc
Q 020742          182 RLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  217 (322)
Q Consensus       182 ~~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~  217 (322)
                      .+|.+......    + ...|..++.|+++++++..
T Consensus        83 ~~~~~~~~~~~----~-~~~e~~~~~W~~~~~l~~~  113 (129)
T PRK10776         83 WFWLVESWEGE----P-WGKEGQPGRWVSQVALNAD  113 (129)
T ss_pred             EEEEEEEECCc----c-CCccCCccEEecHHHCccC
Confidence            44544333221    1 2346678899999999873

>cd02885 IPP_Isomerase Isopentenyl diphosphate (IPP) isomerase, a member of the Nudix hydrolase superfamily, is a key enzyme in the isoprenoid biosynthetic pathway

Probab=99.61  E-value=3.9e-15  Score=128.48  Aligned_cols=106  Identities=16%  Similarity=0.223  Sum_probs=76.0

Q ss_pred             ccEEEEEEEeCCCCEEEEEEeeC-----CCcEEcc-cccCCCCCCHHHHHHHHHHHHhCCcccceeee-ee--eeecc--
Q 020742          107 VPVTGAIILDETYERCILVKGWK-----GSSWSFP-RGKKNKDEEDHACAIREVQEETGFDVSKLLNK-DE--FIEKI--  175 (322)
Q Consensus       107 v~v~g~Iv~~~~~~kvLLvrr~~-----~~~w~fP-gG~ie~gEs~~eaA~REv~EETGl~v~~l~~~-~~--~~~~~--  175 (322)
                      ..+++++|+++++ +|||+||..     +|.|++| ||+++.||++++||+||++||||+.+.....+ ..  |....  
T Consensus        30 ~~~v~v~i~~~~~-~iLl~kR~~~~~~~Pg~w~~~~gG~ie~GEt~~eaa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~  108 (165)
T cd02885          30 HRAFSVFLFNSKG-RLLLQRRALSKYTFPGLWTNTCCSHPLPGEGVKDAAQRRLREELGITGDLLELVLPRFRYRAPDDG  108 (165)
T ss_pred             eeEEEEEEEcCCC-cEEEEeccCCCccCCCcccccccCCCCCCCCHHHHHHHHHHHHhCCCccchhhccceEEEEEEcCC
Confidence            5677888888874 999999865     6889996 89999999999999999999999998754332 22  11111  


Q ss_pred             -c-CeEEEEEEEEEeecCCCCCCCCCccceeeEEEEeccccccc
Q 020742          176 -F-GQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  217 (322)
Q Consensus       176 -~-~~~~~~~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~  217 (322)
                       . .+....+|.+.. ...  ..+ ..+|+.++.|++++++.++
T Consensus       109 ~~~~~~i~~~f~~~~-~~~--~~~-~~~Ev~~~~w~~~~el~~~  148 (165)
T cd02885         109 GLVEHEIDHVFFARA-DVT--LIP-NPDEVSEYRWVSLEDLKEL  148 (165)
T ss_pred             CceeeEEEEEEEEEe-CCC--CCC-CccceeEEEEECHHHHHHH
Confidence             1 123445555543 222  122 5678999999999999873

Isoprenoids comprise a large family of natural products including sterols, carotenoids, dolichols and prenylated proteins. These compounds are synthesized from two precursors: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). IPP isomerase catalyzes the interconversion of IPP and DMAPP by a stereoselective antarafacial transposition of hydrogen. The enzyme requires one Mn2+ or Mg2+ ion in its active site to fold into an active conformation and also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. The metal binding site is present within the active site and plays structural and catalytical roles. IPP isomerase is well represented in several bacteria, archaebacteria and eukaryotes, including fungi, mamm

>cd03425 MutT_pyrophosphohydrolase The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi)

Probab=99.61  E-value=7.8e-15  Score=118.54  Aligned_cols=105  Identities=24%  Similarity=0.389  Sum_probs=75.9

Q ss_pred             ccEEEEEEEeCCCCEEEEEEeeC----CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeeeee-cccCeEEE
Q 020742          107 VPVTGAIILDETYERCILVKGWK----GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIE-KIFGQQRV  181 (322)
Q Consensus       107 v~v~g~Iv~~~~~~kvLLvrr~~----~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~~~-~~~~~~~~  181 (322)
                      |.++.+++.+++ +++||++|..    .|.|.||||+++.+|++.+||.||+.||||+++.....+..+.. .......+
T Consensus         1 ~~~~~~~i~~~~-~~~Ll~~r~~~~~~~g~w~~p~G~~~~~e~~~~~a~Re~~EE~g~~~~~~~~~~~~~~~~~~~~~~~   79 (124)
T cd03425           1 IEVVAAIIIDDD-GRILIAQRPAGKHLGGLWEFPGGKVEPGETPEQALVRELREELGIEVEVGELLATVEHDYPDKRVTL   79 (124)
T ss_pred             CeEEEEEEECCC-CEEEEEEeCCCCCCCCeEeCCCcccCCCCCHHHHHHHHHHHhhCcEEeccceEEEEEeeCCCCeEEE
Confidence            356777787775 4999999864    68999999999999999999999999999998775444433322 12223455


Q ss_pred             EEEEEEeecCCCCCCCCCccceeeEEEEeccccccc
Q 020742          182 RLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  217 (322)
Q Consensus       182 ~~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~  217 (322)
                      .+|.+......    . ...|..++.|++++++..+
T Consensus        80 ~~~~~~~~~~~----~-~~~e~~~~~W~~~~el~~~  110 (124)
T cd03425          80 HVFLVELWSGE----P-QLLEHQELRWVPPEELDDL  110 (124)
T ss_pred             EEEEEeeeCCC----c-ccccCceEEEeeHHHcccC
Confidence            56655443322    1 1356788999999999873

This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides.

>cd04692 Nudix_Hydrolase_33 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.61  E-value=3.3e-15  Score=125.84  Aligned_cols=109  Identities=22%  Similarity=0.263  Sum_probs=75.8

Q ss_pred             cEEEEEEEeCCC--CEEEEEEeeC-----CCcEEc-ccccCCCCCCHHHHHHHHHHHHhCCccc--ceeeeeeeeec-c-
Q 020742          108 PVTGAIILDETY--ERCILVKGWK-----GSSWSF-PRGKKNKDEEDHACAIREVQEETGFDVS--KLLNKDEFIEK-I-  175 (322)
Q Consensus       108 ~v~g~Iv~~~~~--~kvLLvrr~~-----~~~w~f-PgG~ie~gEs~~eaA~REv~EETGl~v~--~l~~~~~~~~~-~-  175 (322)
                      .++.++|++.+.  +++||++|..     +|.|++ |||+++.||++.+||+||++||||+.+.  .+..+..+... . 
T Consensus         3 ~~v~~~v~~~~~~~~~vLl~~R~~~~~~~pg~W~~~~gG~ve~gEt~~~aa~REl~EEtGl~~~~~~l~~~~~~~~~~~~   82 (144)
T cd04692           3 RTFHCWIITKDEGKGYVLLQKRSANKKTYPGLWDISSAGHILAGETPLEDGIRELEEELGLDVSADDLIPLGTFKIEYDH   82 (144)
T ss_pred             eEEEEEEEEccCCCCEEEEEecCCCCCCCCCccccccCcccCCCCCHHHHHHHHHHHHhCCCCChHHeEEeeEEEEeccc
Confidence            456777877651  4999999865     589999 5999999999999999999999999864  34434333211 1 


Q ss_pred             ----cCeEEEEEEEEEeecCCCCCCCCCccceeeEEEEeccccccc
Q 020742          176 ----FGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  217 (322)
Q Consensus       176 ----~~~~~~~~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~  217 (322)
                          ......++|++.......... ...+|+.++.|++++++..+
T Consensus        83 ~~~~~~~~~~~~f~~~~~~~~~~~~-~~~~E~~~~~W~~~~el~~~  127 (144)
T cd04692          83 IGKLIDREFHHVYLYELKVPLEEFT-LQKEEVAGVVLIPLDEFAEL  127 (144)
T ss_pred             cCCCccceEEEEEEEeccCChhhcC-CChhHhheEEEECHHHHHHH
Confidence                122345566665443211222 24578999999999999763

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>TIGR00586 mutt mutator mutT protein

Probab=99.59  E-value=2.4e-14  Score=117.28  Aligned_cols=104  Identities=19%  Similarity=0.154  Sum_probs=70.3

Q ss_pred             cEEEEEEEeCCCCEEEEEEeeC----CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeeeee-cccCeEEEE
Q 020742          108 PVTGAIILDETYERCILVKGWK----GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIE-KIFGQQRVR  182 (322)
Q Consensus       108 ~v~g~Iv~~~~~~kvLLvrr~~----~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~~~-~~~~~~~~~  182 (322)
                      .++++|+.++++ ++||++|..    +|.|+||||+++.||++.+||+||+.||||+++.....+..... .+.....+.
T Consensus         5 ~~~~~ii~~~~~-~vLl~~R~~~~~~~g~w~~Pgg~ve~ge~~~~~~~RE~~EE~g~~~~~~~~~~~~~h~~~~~~~~~~   83 (128)
T TIGR00586         5 QIAVGIIRNENG-EIIITRRADGHMFAKLLEFPGGKEEGGETPEQAVVRELEEEIGIPQHFSEFEKLEYEFYPRHITLWF   83 (128)
T ss_pred             EEEEEEEECCCC-EEEEEEEeCCCCCCCeEECCCcccCCCCCHHHHHHHHHHHHHCCcceeeeEEEEEEEECCCcEEEEE
Confidence            455566666653 899999865    68999999999999999999999999999998764333322211 122223344


Q ss_pred             EEEEEeecCCCCCCCCCccceeeEEEEeccccccc
Q 020742          183 LYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  217 (322)
Q Consensus       183 ~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~  217 (322)
                      +|.+.. .+..   + ...+..++.|++++++...
T Consensus        84 ~~~~~~-~~~~---~-~~~~~~~~~W~~~~~l~~~  113 (128)
T TIGR00586        84 WLLERW-EGGP---P-GKEGQPEEWWVLVGLLADD  113 (128)
T ss_pred             EEEEEE-cCCC---c-CcccccccEEeCHHHCCcc
Confidence            444433 2221   1 1234567899999999874

All proteins in this family for which functions are known are involved in repairing oxidative damage to dGTP (they are 8-oxo-dGTPases). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>cd04694 Nudix_Hydrolase_35 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.58  E-value=1.8e-14  Score=121.75  Aligned_cols=106  Identities=16%  Similarity=0.292  Sum_probs=71.7

Q ss_pred             EEEEEEEeCCCCEEEEEEeeC-----CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccce----eeeeee--e-e---
Q 020742          109 VTGAIILDETYERCILVKGWK-----GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKL----LNKDEF--I-E---  173 (322)
Q Consensus       109 v~g~Iv~~~~~~kvLLvrr~~-----~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l----~~~~~~--~-~---  173 (322)
                      ++++|+++.++ +|||+||..     +|.|++|||+++.||++.+||+||+.||||+.+...    ..+..+  . .   
T Consensus         3 ~v~viv~~~~~-~vLl~rr~~~~~~~~g~w~~PgG~v~~~E~~~~aa~RE~~EE~gi~~~~~~~~~~~l~~~~~~~~~~~   81 (143)
T cd04694           3 GVAVLLQSSDQ-KLLLTRRASSLRIFPNVWVPPGGHVELGENLLEAGLRELNEETGLTLDPIDKSWQVLGLWESVYPPLL   81 (143)
T ss_pred             EEEEEEEcCCC-EEEEEEECCCCCCCCCeEECcccccCCCCCHHHHHHHHHHHHHCCCccccccceeEEeeecccccccc
Confidence            45667777764 999999974     688999999999999999999999999999988642    222211  1 1   


Q ss_pred             -cc-cCeEEEEEEEEEeecCC---C--CCCCCCccceeeEEEEecccccc
Q 020742          174 -KI-FGQQRVRLYIIAGVRDD---T--AFAPQTKKEISEIAWQRLDELQP  216 (322)
Q Consensus       174 -~~-~~~~~~~~y~~~~~~~~---~--~~~~~~~~Ei~~~~Wv~ldeL~~  216 (322)
                       .. .....+.+|++......   .  ... ...+|+.+++|++++++.+
T Consensus        82 ~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~-~~~~Ev~~~~Wv~~~~a~~  130 (143)
T cd04694          82 SRGLPKRHHIVVYILVKSSETHQQLQARLQ-PDPNEVSAAAWLDKSLAKA  130 (143)
T ss_pred             CCCcccceeEEEEEEEEecccccccccccc-CChhhccceEeeCHHHHHH
Confidence             11 11233344443322211   0  111 2358999999999999876

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd02883 Nudix_Hydrolase Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.58  E-value=3.2e-14  Score=113.96  Aligned_cols=105  Identities=36%  Similarity=0.500  Sum_probs=75.3

Q ss_pred             EEEEEEEeCCCCEEEEEEeeC--CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeee--eeeec-ccCeEEEEE
Q 020742          109 VTGAIILDETYERCILVKGWK--GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKD--EFIEK-IFGQQRVRL  183 (322)
Q Consensus       109 v~g~Iv~~~~~~kvLLvrr~~--~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~--~~~~~-~~~~~~~~~  183 (322)
                      ++++++.+.+ +++||+++.+  .+.|.+|||+++.||++.+||+||+.||+|+.+.......  .+... ........+
T Consensus         2 ~~~~i~~~~~-~~ill~kr~~~~~~~~~~p~G~~~~~e~~~~~a~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (123)
T cd02883           2 AVGAVILDED-GRVLLVRRADSPGGLWELPGGGVEPGETLEEAAIREVREETGLDVDVLRLLGVYEVESPDEGEHAVVFV   80 (123)
T ss_pred             ceEEEEECCC-CCEEEEEEcCCCCCeEeCCcccccCCCCHHHHHHHHHHHhhCccceeeeEEEEEEeeccCCCceEEEEE
Confidence            4577777775 4899999987  6999999999999999999999999999999886432222  22221 123445555


Q ss_pred             EEEEeecCCCCCCCCCccceeeEEEEecccccc
Q 020742          184 YIIAGVRDDTAFAPQTKKEISEIAWQRLDELQP  216 (322)
Q Consensus       184 y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~  216 (322)
                      |.+........  .....|..++.|++++++.+
T Consensus        81 ~~~~~~~~~~~--~~~~~e~~~~~w~~~~~l~~  111 (123)
T cd02883          81 FLARLVGGEPT--LLPPDEISEVRWVTLDELPA  111 (123)
T ss_pred             EEEEeCCCCcC--CCCCCccceEEEEcHHHCcc
Confidence            65543332211  23457778899999999987

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzy

>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional

Probab=99.57  E-value=2.6e-14  Score=137.11  Aligned_cols=112  Identities=19%  Similarity=0.321  Sum_probs=75.6

Q ss_pred             CcccccEEEEEEEeCCCCEEEEEEeeC---CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeee------eeeee
Q 020742          103 YKVRVPVTGAIILDETYERCILVKGWK---GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNK------DEFIE  173 (322)
Q Consensus       103 y~~~v~v~g~Iv~~~~~~kvLLvrr~~---~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~------~~~~~  173 (322)
                      |.+...++++||++++  +|||++|..   .|.|.+|||+++.||++.+||+||++||||+++......      ..+..
T Consensus       199 ~~~~~vtv~avv~~~g--~VLLvrR~~~p~~g~W~lPGG~ve~gEt~~~Aa~REl~EETGl~v~~~~l~~~~~~~~~f~~  276 (340)
T PRK05379        199 YPPTFVTVDAVVVQSG--HVLLVRRRAEPGKGLWALPGGFLEQDETLLDACLRELREETGLKLPEPVLRGSIRDQQVFDH  276 (340)
T ss_pred             CCCcceEEEEEEEECC--EEEEEEecCCCCCCeEECCcccCCCCCCHHHHHHHHHHHHHCCcccccccceeeeeeEEEcC
Confidence            4444445666766653  999999875   688999999999999999999999999999987542111      11111


Q ss_pred             cc---cCeEEEEEEEEEeecCCCCCCCCCccceeeEEEEeccccccc
Q 020742          174 KI---FGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  217 (322)
Q Consensus       174 ~~---~~~~~~~~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~  217 (322)
                      +.   .+....++|++....+. .......+|..++.|++++++..+
T Consensus       277 p~r~~~~~~i~~~f~~~~~~~~-~~~~~~~de~~~~~W~~~~el~~~  322 (340)
T PRK05379        277 PGRSLRGRTITHAFLFEFPAGE-LPRVKGGDDADKARWVPLAELLAM  322 (340)
T ss_pred             CCCCCCCcEEEEEEEEEecCCc-cCccCCCCceeeEEEEEHHHhhhh
Confidence            11   12334455555432222 122334578899999999999763

>PRK03759 isopentenyl-diphosphate delta-isomerase; Provisional

Probab=99.57  E-value=1.4e-14  Score=127.22  Aligned_cols=106  Identities=15%  Similarity=0.244  Sum_probs=74.8

Q ss_pred             ccEEEEEEEeCCCCEEEEEEeeC-----CCcEEcc-cccCCCCCCHHHHHHHHHHHHhCCcccceeee-eee--ee--c-
Q 020742          107 VPVTGAIILDETYERCILVKGWK-----GSSWSFP-RGKKNKDEEDHACAIREVQEETGFDVSKLLNK-DEF--IE--K-  174 (322)
Q Consensus       107 v~v~g~Iv~~~~~~kvLLvrr~~-----~~~w~fP-gG~ie~gEs~~eaA~REv~EETGl~v~~l~~~-~~~--~~--~-  174 (322)
                      ..+++++|++++ ++|||+||..     +|.|.+| ||+++.||++.+||+||+.||||+++..+..+ ..+  ..  . 
T Consensus        34 h~av~v~i~~~~-g~vLL~rR~~~~~~~PG~w~~~~gG~ve~GEt~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~  112 (184)
T PRK03759         34 HLAFSCYLFDAD-GRLLVTRRALSKKTWPGVWTNSCCGHPQPGESLEDAVIRRCREELGVEITDLELVLPDFRYRATDPN  112 (184)
T ss_pred             eeEEEEEEEcCC-CeEEEEEccCCCCCCCCcccccccCCCCCCCCHHHHHHHHHHHHhCCCccccccccceEEEEEecCC
Confidence            456788888876 4999999753     5678775 79999999999999999999999998753322 111  11  1 


Q ss_pred             c-cCeEEEEEEEEEeecCCCCCCCCCccceeeEEEEeccccccc
Q 020742          175 I-FGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  217 (322)
Q Consensus       175 ~-~~~~~~~~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~  217 (322)
                      . ......++|.+... +.  . ..+.+|+.++.|++++++.++
T Consensus       113 ~~~~~~~~~vf~~~~~-~~--~-~~~~~Ev~~~~W~~~~el~~~  152 (184)
T PRK03759        113 GIVENEVCPVFAARVT-SA--L-QPNPDEVMDYQWVDPADLLRA  152 (184)
T ss_pred             CceeeEEEEEEEEEEC-CC--C-CCChhHeeeEEEECHHHHHHH
Confidence            1 12234556666543 22  1 234578999999999999873

>cd04665 Nudix_Hydrolase_8 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.56  E-value=6.6e-14  Score=114.48  Aligned_cols=99  Identities=19%  Similarity=0.202  Sum_probs=75.5

Q ss_pred             EEEEEEeCCCCEEEEEEeeCCCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeeeeecc-cCeEEEEEEEEEe
Q 020742          110 TGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKI-FGQQRVRLYIIAG  188 (322)
Q Consensus       110 ~g~Iv~~~~~~kvLLvrr~~~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~~~~~-~~~~~~~~y~~~~  188 (322)
                      |.+|+.+++  ++||+++. .+.|++|||+++.||++.+||.||++||||+.+..+..+..+.... .......+|++..
T Consensus         3 v~vi~~~~~--~vLl~~~~-~~~w~lPgG~ve~gE~~~~aa~REl~EE~G~~~~~~~~l~~~~~~~~~~~~~~~~y~a~~   79 (118)
T cd04665           3 VLVICFYDD--GLLLVRHK-DRGWEFPGGHVEPGETIEEAARREVWEETGAELGSLTLVGYYQVDLFESGFETLVYPAVS   79 (118)
T ss_pred             EEEEEEECC--EEEEEEeC-CCEEECCccccCCCCCHHHHHHHHHHHHHCCccCceEEEEEEEecCCCCcEEEEEEEEEE
Confidence            456666653  89999987 5789999999999999999999999999999998877777664432 2345666777765


Q ss_pred             ecCCCCCCCCCccceeeEEEEecccc
Q 020742          189 VRDDTAFAPQTKKEISEIAWQRLDEL  214 (322)
Q Consensus       189 ~~~~~~~~~~~~~Ei~~~~Wv~ldeL  214 (322)
                      .... .  .....|+....|++.+..
T Consensus        80 ~~~~-~--~~~~~E~~~~~~~~~~~~  102 (118)
T cd04665          80 AQLE-E--KASYLETDGPVLFKNEPE  102 (118)
T ss_pred             Eecc-c--ccccccccCcEEeccCCc
Confidence            5543 1  224588999999987654

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s

>cd04685 Nudix_Hydrolase_26 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.53  E-value=6e-14  Score=117.04  Aligned_cols=108  Identities=26%  Similarity=0.371  Sum_probs=71.1

Q ss_pred             EEEEEEEeCCCCEEEEEEeeC-----CCcEEcccccCCCCCCHHHHHHHHHHHHhCCccccee-ee--ee--eeecc-cC
Q 020742          109 VTGAIILDETYERCILVKGWK-----GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLL-NK--DE--FIEKI-FG  177 (322)
Q Consensus       109 v~g~Iv~~~~~~kvLLvrr~~-----~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~-~~--~~--~~~~~-~~  177 (322)
                      ++++++++.++ +|||+++..     .+.|.+|||+++.||++.+||.||++||||+.+..+. .+  ..  +.... ..
T Consensus         2 ~~~~~i~~~~g-~vLl~r~~~~~~~~~~~w~~PgG~ve~gE~~~~a~~Re~~EE~G~~~~~~~~~~~~~~~~f~~~~~~~   80 (133)
T cd04685           2 AARVVLLDPDD-RVLLLRGDDPDSPGPDWWFTPGGGVEPGESPEQAARRELREETGITVADLGPPVWRRDAAFTFLGVDG   80 (133)
T ss_pred             eEEEEEEcCCC-eEEEEEEeCCCCCCCCEEECCcCCCCCCCCHHHHHHHHHHHHHCCccccccceEEEEEEEEEecCccc
Confidence            56788888774 999999864     4689999999999999999999999999999883322 11  12  21111 12


Q ss_pred             eEEEEEEEEEeecCCCCCC---CCCccceeeEEEEeccccccc
Q 020742          178 QQRVRLYIIAGVRDDTAFA---PQTKKEISEIAWQRLDELQPA  217 (322)
Q Consensus       178 ~~~~~~y~~~~~~~~~~~~---~~~~~Ei~~~~Wv~ldeL~~~  217 (322)
                      ++...+|.+.....+....   .....++..++|+++++|...
T Consensus        81 ~~~~~~f~~~~~~~~~~~~~~~~~E~~~~~~~~W~~~~el~~~  123 (133)
T cd04685          81 RQEERFFLARTPRTEPSPAGWTALERRSILGWRWWTRAELAAT  123 (133)
T ss_pred             eeeEEEEEEEcCCccccCCCCChhhhhhcccccCCCHHHHhhC
Confidence            2334445443322111111   111234668999999999875

Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>TIGR02705 nudix_YtkD nucleoside triphosphatase YtkD

Probab=99.53  E-value=1.8e-13  Score=116.92  Aligned_cols=100  Identities=22%  Similarity=0.180  Sum_probs=75.8

Q ss_pred             EEEEEEEeCCCCEEEEEEeeCCCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeeeee-cccCeEEEEEEEEE
Q 020742          109 VTGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIE-KIFGQQRVRLYIIA  187 (322)
Q Consensus       109 v~g~Iv~~~~~~kvLLvrr~~~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~~~-~~~~~~~~~~y~~~  187 (322)
                      .|++|...++  ++||+++++ ..|++|||+++.||++.+||+||++||||+.+..+..++.+.. ........++|++.
T Consensus        26 ~V~ii~~~~~--~~LL~~~~~-~~~elPgG~vE~gEt~~eaA~REl~EETG~~~~~~~~lg~~~~~~~~~~~~~~vf~A~  102 (156)
T TIGR02705        26 HVLVIPRYKD--QWLLTEHKR-RGLEFPGGKVEPGETSKEAAIREVMEETGAIVKELHYIGQYEVEGESTDFVKDVYFAE  102 (156)
T ss_pred             EEEEEEEECC--EEEEEEEcC-CcEECCceecCCCCCHHHHHHHHHHHHhCcEeeeeEEEEEEEecCCCcEEEEEEEEEE
Confidence            4455555554  899999875 5699999999999999999999999999999988888877644 33456677788887


Q ss_pred             eecCCCCCCCCCccceeeEE-EEeccccccc
Q 020742          188 GVRDDTAFAPQTKKEISEIA-WQRLDELQPA  217 (322)
Q Consensus       188 ~~~~~~~~~~~~~~Ei~~~~-Wv~ldeL~~~  217 (322)
                      .....    +.  +|..++. ++++++++++
T Consensus       103 ~~~~~----~~--~e~~E~~~~~~~~~~~~~  127 (156)
T TIGR02705       103 VSALE----SK--DDYLETKGPVLLQEIPDI  127 (156)
T ss_pred             Eeccc----cC--CCceeeEeEEEHHHHHHH
Confidence            66332    22  5545665 7999998773

The functional assignment to the proteins of this family is contentious. Reference challenges the findings of reference, both in interpretation and in enzyme assay results. This protein belongs to the nudix family and shares some sequence identity with E. coli MutT but appears not to be functionally interchangeable with it.

>cd04674 Nudix_Hydrolase_16 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.51  E-value=3.5e-13  Score=110.17  Aligned_cols=57  Identities=23%  Similarity=0.296  Sum_probs=46.2

Q ss_pred             cccEEEEEEEeCCCCEEEEEEeeC---CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccc
Q 020742          106 RVPVTGAIILDETYERCILVKGWK---GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSK  164 (322)
Q Consensus       106 ~v~v~g~Iv~~~~~~kvLLvrr~~---~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~  164 (322)
                      .++++++|+...+  ++||++|..   .+.|+||||+++.||++.+||.||+.||||+++..
T Consensus         3 p~~~av~vl~~~~--~~lL~~r~~~~~~~~w~lPgG~ve~~E~~~~aa~REl~EE~g~~~~~   62 (118)
T cd04674           3 PLPVVVALLPVDD--GLLVIRRGIEPGRGKLALPGGFIELGETWQDAVARELLEETGVAVDP   62 (118)
T ss_pred             CcEEEEEEEEECC--CEEEEEeecCCCCCeEECCceecCCCCCHHHHHHHHHHHHHCCcccc
Confidence            3556667766655  466666644   58999999999999999999999999999998863

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PRK10707 putative NUDIX hydrolase; Provisional

Probab=99.51  E-value=1.6e-13  Score=121.25  Aligned_cols=107  Identities=18%  Similarity=0.109  Sum_probs=74.0

Q ss_pred             EEEEEEE-eCCCCEEEEEEeeC-----CCcEEcccccCCC-CCCHHHHHHHHHHHHhCCcccceeeeeeeee-cccCeEE
Q 020742          109 VTGAIIL-DETYERCILVKGWK-----GSSWSFPRGKKNK-DEEDHACAIREVQEETGFDVSKLLNKDEFIE-KIFGQQR  180 (322)
Q Consensus       109 v~g~Iv~-~~~~~kvLLvrr~~-----~~~w~fPgG~ie~-gEs~~eaA~REv~EETGl~v~~l~~~~~~~~-~~~~~~~  180 (322)
                      ++++|.+ +.+.+++||++|..     .|.|+||||++|. +|++++||+||++||||+++..+..++.+.. .......
T Consensus        32 aavvl~l~~~~~~~vLl~~R~~~~r~~~G~~~~PGG~~e~~de~~~~tA~REl~EEtGl~~~~~~~lg~l~~~~~~~~~~  111 (190)
T PRK10707         32 AAVLIPIVRRPQPTLLLTQRSIHLRKHAGQVAFPGGAVDPTDASLIATALREAQEEVAIPPSAVEVIGVLPPVDSSTGYQ  111 (190)
T ss_pred             eEEEEEEEECCCCEEEEEEeCCcccCCCCcEEcCCcccCCCcccHHHHHHHHHHHHHCCCccceEEEEEeeeeeccCCcE
Confidence            4444434 23234899998543     6899999999997 5789999999999999999988777766542 1223334


Q ss_pred             EEEEEEEeecCCCCCCCCCccceeeEEEEeccccccc
Q 020742          181 VRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  217 (322)
Q Consensus       181 ~~~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~  217 (322)
                      +..|++.. ...... ..+++|+.++.|++++++.++
T Consensus       112 ~~~~v~~~-~~~~~~-~~d~~Ev~~v~~vpl~e~~~~  146 (190)
T PRK10707        112 VTPVVGII-PPDLPY-RANEDEVAAVFEMPLAEALHL  146 (190)
T ss_pred             EEEEEEEE-CCCCCC-CCChhhhheEEEEeHHHHhCc
Confidence            44444432 222222 235689999999999999874

>TIGR02150 IPP_isom_1 isopentenyl-diphosphate delta-isomerase, type 1

Probab=99.51  E-value=1.1e-13  Score=118.75  Aligned_cols=107  Identities=17%  Similarity=0.304  Sum_probs=74.9

Q ss_pred             cccccEEEEEEEeCCCCEEEEEEeeC-----CCcEEcc-cccCCCCCCHHHHHHHHHHHHhCCccccee--eee--eeee
Q 020742          104 KVRVPVTGAIILDETYERCILVKGWK-----GSSWSFP-RGKKNKDEEDHACAIREVQEETGFDVSKLL--NKD--EFIE  173 (322)
Q Consensus       104 ~~~v~v~g~Iv~~~~~~kvLLvrr~~-----~~~w~fP-gG~ie~gEs~~eaA~REv~EETGl~v~~l~--~~~--~~~~  173 (322)
                      ...+.+++++|++.++ +|||+||..     .|.|++| ||+++.||  .+||+||++||||+++....  .+.  .+..
T Consensus        24 g~~h~~v~v~v~~~~g-~vLl~kR~~~k~~~PG~W~~~~gG~v~~GE--~eaa~REl~EE~Gl~~~~~~l~~~~~~~~~~  100 (158)
T TIGR02150        24 TPLHRAFSVFLFNEEG-QLLLQRRALSKITWPGVWTNSCCSHPLPGE--LEAAIRRLREELGIPADDVPLTVLPRFSYRA  100 (158)
T ss_pred             CCeEEEEEEEEEcCCC-eEEEEeccCCCcCCCCCccccccCCCCccc--HHHHHHHHHHHHCCCccccceEEcceEEEEE
Confidence            3455677888888764 999999865     5999997 79999999  49999999999999887542  222  1211


Q ss_pred             c-ccC-eEEEEEEEEEeecCCCCCCCCCccceeeEEEEeccccccc
Q 020742          174 K-IFG-QQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  217 (322)
Q Consensus       174 ~-~~~-~~~~~~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~  217 (322)
                      . ..+ .....+|.+.. ..  ...+ ..+|+.++.|++++++..+
T Consensus       101 ~~~~g~~~~~~~f~~~~-~~--~~~~-~~~Ev~~~~W~~~~el~~~  142 (158)
T TIGR02150       101 RDAWGEHELCPVFFARA-PV--PLNP-NPEEVAEYRWVSLEELKEI  142 (158)
T ss_pred             ecCCCcEEEEEEEEEec-CC--cccC-ChhHeeeEEEeCHHHHHHH
Confidence            1 112 33445555543 22  2233 3569999999999999874

This model represents type 1 of two non-homologous families of the enzyme isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP is an essential building block for many compounds, including enzyme cofactors, sterols, and prenyl groups. This inzyme interconverts isopentenyl diphosphate and dimethylallyl diphosphate.

>cd04662 Nudix_Hydrolase_5 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.50  E-value=2.3e-13  Score=112.11  Aligned_cols=55  Identities=31%  Similarity=0.462  Sum_probs=45.6

Q ss_pred             EEEEEEEeC--CCCEEEEEEe-------eCCCcEEcccccCCCCCCHHHHHHHHHHHHhCCccc
Q 020742          109 VTGAIILDE--TYERCILVKG-------WKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVS  163 (322)
Q Consensus       109 v~g~Iv~~~--~~~kvLLvrr-------~~~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~  163 (322)
                      ++|+|+++.  +..+|||+++       ...+.|++|||+++.||++.+||+||++||||+++.
T Consensus         2 ~~g~v~~~~~~~~~~vlL~~~~~~~~~~~~~~~W~lPgG~ie~~E~~~~aA~REl~EEtGl~~~   65 (126)
T cd04662           2 SAGILLYRFRDGRIEVLLVHPGGPFWANKDLGAWSIPKGEYTEGEDPLLAAKREFSEETGFCVD   65 (126)
T ss_pred             eEEEEEEEEcCCcEEEEEEEccCccccCCCCCEEECCcccCCCCcCHHHHHHHHHHHHhCCcce
Confidence            467777643  3237999985       236899999999999999999999999999999875

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s

>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]

Probab=99.48  E-value=4.4e-14  Score=129.56  Aligned_cols=161  Identities=14%  Similarity=0.155  Sum_probs=112.6

Q ss_pred             CChhhhhchHHHHHHHhhhheeeeeCCccCCCCCCcchHHHHHHHHhCCCCcccccccchhHHHhhhcCCcccccEEEEE
Q 020742           34 VPQEDQQSFERILFLVEYAHWFYEDNSVENNPSLKSFTLKEFTSLMFNSCDVLRPYVAHIDDIFKDFTSYKVRVPVTGAI  113 (322)
Q Consensus        34 ~p~~~~~~~~rl~f~ie~a~w~y~d~~~~~~p~l~~~~l~~f~~~l~~~~~~l~~~~~~~~~~~~~~~~y~~~v~v~g~I  113 (322)
                      +|++.+....+   .++..+|+-...+|.++-.-. ..-..-.+..+.+|..               ..|...-|++-++
T Consensus        90 ~~~~~~~~~~~---a~~l~~w~~~~RFCg~CG~~~-~~~~~g~~~~C~~cg~---------------~~fPR~dP~vIv~  150 (279)
T COG2816          90 LDEGLFGLAAR---AVQLLEWYRSHRFCGRCGTKT-YPREGGWARVCPKCGH---------------EHFPRIDPCVIVA  150 (279)
T ss_pred             CCHHHHHHHHH---HHHHHHHHhhCcCCCCCCCcC-ccccCceeeeCCCCCC---------------ccCCCCCCeEEEE
Confidence            67766554444   899999998877666542111 1111222334455542               3455566776666


Q ss_pred             EEeCCCCEEEEEEeeC--CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeeeeecccCeEEEEEEEEEeecC
Q 020742          114 ILDETYERCILVKGWK--GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQQRVRLYIIAGVRD  191 (322)
Q Consensus       114 v~~~~~~kvLLvrr~~--~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~~~~~~~~~~~~~y~~~~~~~  191 (322)
                      |.+.+  ++||.++.+  .|+|+.-+|.||+|||+++|+.|||+||+|+.+.++.++... ...+.+..+--|++...++
T Consensus       151 v~~~~--~ilLa~~~~h~~g~yS~LAGFVE~GETlE~AV~REv~EE~Gi~V~~vrY~~SQ-PWPfP~SLMigf~aey~sg  227 (279)
T COG2816         151 VIRGD--EILLARHPRHFPGMYSLLAGFVEPGETLEQAVAREVFEEVGIKVKNVRYVGSQ-PWPFPHSLMLGFMAEYDSG  227 (279)
T ss_pred             EecCC--ceeecCCCCCCCcceeeeeecccCCccHHHHHHHHHHHhhCeEEeeeeEEecc-CCCCchhhhhhheeeeccc
Confidence            77665  688887766  899999999999999999999999999999999998887764 2334455555566766666


Q ss_pred             CCCCCCCCccceeeEEEEeccc-ccccCC
Q 020742          192 DTAFAPQTKKEISEIAWQRLDE-LQPASD  219 (322)
Q Consensus       192 ~~~~~~~~~~Ei~~~~Wv~lde-L~~~~~  219 (322)
                      +  +. .+..|+.++.||+.++ ++.+..
T Consensus       228 e--I~-~d~~Eleda~WFs~~evl~~L~~  253 (279)
T COG2816         228 E--IT-PDEGELEDARWFSRDEVLPALPP  253 (279)
T ss_pred             c--cc-CCcchhhhccccCHhHHhhhcCC
Confidence            5  23 3458999999999999 555543

>cd03676 Nudix_hydrolase_3 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.45  E-value=7.8e-13  Score=115.67  Aligned_cols=114  Identities=14%  Similarity=0.162  Sum_probs=77.2

Q ss_pred             EEeCC-CCEEEEEEeeC-----CCcE-EcccccCCCCCCHHHHHHHHHHHHhCCccccee---eee--eeee----cccC
Q 020742          114 ILDET-YERCILVKGWK-----GSSW-SFPRGKKNKDEEDHACAIREVQEETGFDVSKLL---NKD--EFIE----KIFG  177 (322)
Q Consensus       114 v~~~~-~~kvLLvrr~~-----~~~w-~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~---~~~--~~~~----~~~~  177 (322)
                      +.|.+ .+++++.||..     +|.| .+|||+++.||++.+||+||++||||+++..+.   .++  .+..    ....
T Consensus        41 ~~~~~~~~~l~lqrRs~~K~~~Pg~wd~~~~G~v~~gE~~~~aA~REl~EE~Gl~~~~~~~l~~~g~~~~~~~~~~~~~~  120 (180)
T cd03676          41 VRDEDGGLRIWIPRRSPTKATWPGMLDNLVAGGLGHGEGPEETLVKECDEEAGLPEDLVRQLKPVGVVSYLREGEAGGLQ  120 (180)
T ss_pred             EEcCCCCeEEEEEeccCCCCCCCCceeeecccCCCCCCCHHHHHHHHHHHHhCCCHHHHhhceeccEEEEEEEcCCCcEe
Confidence            44554 34899999866     7999 589999999999999999999999999887532   222  1211    1123


Q ss_pred             eEEEEEEEEEeecCCCCCCCCCccceeeEEEEeccccccc--CCCcc-chhhhhh
Q 020742          178 QQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA--SDDVI-SHGVTGL  229 (322)
Q Consensus       178 ~~~~~~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~--~~~~~-~~~~~~~  229 (322)
                      +...++|.+. ++..... ..+++|+.++.|++++++.++  .++++ ..++.++
T Consensus       121 ~e~~~~f~~~-~~~~~~~-~~~~~Ev~~~~~~~~~el~~~l~~g~~~~~~~lv~~  173 (180)
T cd03676         121 PEVEYVYDLE-LPPDFIP-APQDGEVESFRLLTIDEVLRALKEGEFKPNCALVTL  173 (180)
T ss_pred             eeEEEEEEEE-cCCCCee-CCCCCcEeEEEEECHHHHHHHHHcCCCCcccHhHHH
Confidence            4556666554 3322222 234689999999999999874  44554 4444444

Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate spe

>PRK08999 hypothetical protein; Provisional

Probab=99.44  E-value=1e-12  Score=124.32  Aligned_cols=105  Identities=26%  Similarity=0.371  Sum_probs=74.3

Q ss_pred             ccEEEEEEEeCCCCEEEEEEeeC----CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeeeee-cccCeEEE
Q 020742          107 VPVTGAIILDETYERCILVKGWK----GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIE-KIFGQQRV  181 (322)
Q Consensus       107 v~v~g~Iv~~~~~~kvLLvrr~~----~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~~~-~~~~~~~~  181 (322)
                      +.+++++|.+.+ +++||+||..    .|.|+||||+++.||++.+||.||++||||+.+.....+..... .......+
T Consensus         5 ~~~~~~vi~~~~-~~vLL~kR~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~l~~~~h~~~~~~~~i   83 (312)
T PRK08999          5 IHVAAGVIRDAD-GRILLARRPEGKHQGGLWEFPGGKVEPGETVEQALARELQEELGIEVTAARPLITVRHDYPDKRVRL   83 (312)
T ss_pred             eEEEEEEEECCC-CeEEEEEecCCCCCCCeEECCccCCCCCCCHHHHHHHHHHHHhCCceecceeEEEEEEEcCCCeEEE
Confidence            345566666654 3899999865    68999999999999999999999999999998765433332211 12233456


Q ss_pred             EEEEEEeecCCCCCCCCCccceeeEEEEeccccccc
Q 020742          182 RLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  217 (322)
Q Consensus       182 ~~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~  217 (322)
                      ++|.+......    + ...|..++.|++++++.++
T Consensus        84 ~~y~~~~~~~~----~-~~~e~~~~~Wv~~~el~~~  114 (312)
T PRK08999         84 DVRRVTAWQGE----P-HGREGQPLAWVAPDELAVY  114 (312)
T ss_pred             EEEEEEEecCc----c-cCccCCccEEecHHHcccC
Confidence            66766543322    2 2356678899999999874

>cd04663 Nudix_Hydrolase_6 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.43  E-value=2.8e-12  Score=105.89  Aligned_cols=105  Identities=16%  Similarity=0.093  Sum_probs=61.9

Q ss_pred             EEEEEeCCC-CEEEEEEeeCCCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeeeeecc--cCeEEEEEEEEE
Q 020742          111 GAIILDETY-ERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKI--FGQQRVRLYIIA  187 (322)
Q Consensus       111 g~Iv~~~~~-~kvLLvrr~~~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~~~~~--~~~~~~~~y~~~  187 (322)
                      .+++.++++ .+||+.+... +.|.||||+++.||++.+||+||++||||+++.............  .....++++.+.
T Consensus         4 ~~~~~~~~~~~~ll~~r~~~-~~~~lPgG~ve~~E~~~~aa~Rel~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~   82 (126)
T cd04663           4 PAVLRRNGEVLELLVFEHPL-AGFQIVKGTVEPGETPEAAALRELQEESGLPSFLSDYILHVWERRFYQKRHFWHLTLCE   82 (126)
T ss_pred             EEEEEeCCceEEEEEEEcCC-CcEECCCccCCCCCCHHHHHHHHHHHHHCCeeeeeeecceeeeCCEeeccEEEEEEEEE
Confidence            445544432 3677776654 569999999999999999999999999999873211111111111  133444555443


Q ss_pred             eec---CCCCCCCC-CccceeeEEEEecccccc
Q 020742          188 GVR---DDTAFAPQ-TKKEISEIAWQRLDELQP  216 (322)
Q Consensus       188 ~~~---~~~~~~~~-~~~Ei~~~~Wv~ldeL~~  216 (322)
                      ...   ......+. +..+...+.|++++++..
T Consensus        83 ~~~~~~~~~~~~~~~~E~~~i~~~Wv~l~~~~~  115 (126)
T cd04663          83 VDQDLPDSWVHFVQDDGGHEFRFFWVDLASCLD  115 (126)
T ss_pred             ecCCCcccccCcccCCCCceEEEEEEccccccc
Confidence            321   11111111 233334566999999965

Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V) which functions as metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are

>PLN03143 nudix hydrolase; Provisional

Probab=99.41  E-value=1.7e-12  Score=121.08  Aligned_cols=110  Identities=19%  Similarity=0.276  Sum_probs=78.4

Q ss_pred             cEEEEEEE-eCCC-CEEEEEEeeC----CCcEEcccccCCC-CCCHHHHHHHHHHHHhCCccc--ceeeee---------
Q 020742          108 PVTGAIIL-DETY-ERCILVKGWK----GSSWSFPRGKKNK-DEEDHACAIREVQEETGFDVS--KLLNKD---------  169 (322)
Q Consensus       108 ~v~g~Iv~-~~~~-~kvLLvrr~~----~~~w~fPgG~ie~-gEs~~eaA~REv~EETGl~v~--~l~~~~---------  169 (322)
                      +.|++++. +.++ .+++|+++++    ...|+||||.+|. ||++.+||+||++||||+.+.  .+..+.         
T Consensus       129 ~aVaVL~~l~~~ge~~VlLVrQ~R~pvg~~~lE~PAG~lD~~~edp~~aA~REL~EETG~~~~a~~lv~L~~~~~~~~g~  208 (291)
T PLN03143        129 PAVAVLILLESEGETYAVLTEQVRVPVGKFVLELPAGMLDDDKGDFVGTAVREVEEETGIKLKLEDMVDLTAFLDPSTGC  208 (291)
T ss_pred             CeEEEEEEEeCCCCEEEEEEEeEecCCCcEEEEecccccCCCCCCHHHHHHHHHHHHHCCccccceEEEeeeccccCcCc
Confidence            35555554 4332 2499999988    5689999999997 589999999999999999864  354442         


Q ss_pred             -eeeecccCeEEEEEEEEEeecCCC--------CCCCCCccceeeEEEEeccccccc
Q 020742          170 -EFIEKIFGQQRVRLYIIAGVRDDT--------AFAPQTKKEISEIAWQRLDELQPA  217 (322)
Q Consensus       170 -~~~~~~~~~~~~~~y~~~~~~~~~--------~~~~~~~~Ei~~~~Wv~ldeL~~~  217 (322)
                       .+..++.....+++|++.......        .....+++|...+.|++++++..+
T Consensus       209 ~v~pspG~~dE~i~Lfla~~~v~~~~l~~l~~~~~~l~degE~Iev~~vpl~eiw~~  265 (291)
T PLN03143        209 RMFPSPGGCDEEISLFLYRGHVDKETIRQLQGKETGLRDHGELIKVHVVPYRELWRM  265 (291)
T ss_pred             eEEecCCccCCeEEEEEEccccchhhhcccccccCCCCCCCcEEEEEEEEHHHHHHH
Confidence             234456677888888876653211        011235578788999999998774

>PLN02709 nudix hydrolase

Probab=99.40  E-value=3.1e-12  Score=114.84  Aligned_cols=97  Identities=24%  Similarity=0.166  Sum_probs=68.9

Q ss_pred             CEEEEEEeeC-----CCcEEcccccCCCC-CCHHHHHHHHHHHHhCCcccceeeeeeeee-cccCeEEEEEEEEEeec-C
Q 020742          120 ERCILVKGWK-----GSSWSFPRGKKNKD-EEDHACAIREVQEETGFDVSKLLNKDEFIE-KIFGQQRVRLYIIAGVR-D  191 (322)
Q Consensus       120 ~kvLLvrr~~-----~~~w~fPgG~ie~g-Es~~eaA~REv~EETGl~v~~l~~~~~~~~-~~~~~~~~~~y~~~~~~-~  191 (322)
                      .+|||++|..     .|.|+||||++|++ +++.+||+||++||+|+.......++.... .......++-|++.... .
T Consensus        51 ~~vLl~~Rs~~l~~h~GqiafPGG~~e~~D~~~~~tAlRE~~EEiGl~~~~v~vlg~L~~~~t~sg~~V~P~V~~~~~~~  130 (222)
T PLN02709         51 LRVILTKRSSTLSSHPGEVALPGGKRDEEDKDDIATALREAREEIGLDPSLVTIISVLEPFVNKKGMSVAPVIGFLHDKK  130 (222)
T ss_pred             eEEEEEEcCCCCCCCCCCccCCCcccCCCCCCHHHHHHHHHHHHHCCCchheEEeeecCCeECCCCCEEEEEEEEecCCC
Confidence            3899999866     79999999999996 578999999999999998875444433211 12223455555553221 1


Q ss_pred             CCCCCCCCccceeeEEEEeccccccc
Q 020742          192 DTAFAPQTKKEISEIAWQRLDELQPA  217 (322)
Q Consensus       192 ~~~~~~~~~~Ei~~~~Wv~ldeL~~~  217 (322)
                      ..... .+++|+.++.|++++.+.+.
T Consensus       131 ~~~~~-~np~EV~~vf~vPL~~ll~~  155 (222)
T PLN02709        131 AFKPL-PNPAEVEEIFDVPLEMFLKD  155 (222)
T ss_pred             Ccccc-CChhhhheeEEecHHHHhCC
Confidence            11222 35689999999999999764

>COG0494 MutT NTP pyrophosphohydrolases including oxidative damage repair enzymes [DNA replication, recombination, and repair / General function prediction only]

Probab=99.32  E-value=1.4e-11  Score=101.01  Aligned_cols=107  Identities=29%  Similarity=0.460  Sum_probs=67.5

Q ss_pred             EEEEEeCCCCEEEEEEeeCCC-cEEcccccCCCCCCHHH-HHHHHHHHHhCCccc--ceeeeeeeeecc-cCe----EEE
Q 020742          111 GAIILDETYERCILVKGWKGS-SWSFPRGKKNKDEEDHA-CAIREVQEETGFDVS--KLLNKDEFIEKI-FGQ----QRV  181 (322)
Q Consensus       111 g~Iv~~~~~~kvLLvrr~~~~-~w~fPgG~ie~gEs~~e-aA~REv~EETGl~v~--~l~~~~~~~~~~-~~~----~~~  181 (322)
                      .+++......++|++++...+ .|.||||+++.||++.+ ||+||++||||+.+.  .+..+..+.... ...    ...
T Consensus        15 ~~~~~~~~~~~vl~~~~~~~~~~~~~PgG~ve~~e~~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (161)
T COG0494          15 AVLVGRDGPGEVLLAQRRDDGGLWELPGGKVEPGEELPEEAAARELEEETGLRVKDERLELLGEFPPSPGDGSSVGGREH   94 (161)
T ss_pred             EEEEecCCCCEEeEEEccccCCceecCCcccCCCCchHHHHHHHHHHHHhCCeeeeecceeeeeccCcccCcccccceEE
Confidence            333433321489999988765 99999999999999988 999999999999998  455554443221 111    111


Q ss_pred             EEEEEEeecCCCCCCCCC----ccceeeEEEEeccccccc
Q 020742          182 RLYIIAGVRDDTAFAPQT----KKEISEIAWQRLDELQPA  217 (322)
Q Consensus       182 ~~y~~~~~~~~~~~~~~~----~~Ei~~~~Wv~ldeL~~~  217 (322)
                      ..+...............    ..|...+.|++++++...
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~  134 (161)
T COG0494          95 RVFFVAEVDDSLAVAIEGLSAPSEELEDLEWVPLDELAAL  134 (161)
T ss_pred             EEEEeeeccccccccccccCCCcchhhceeeeeHHHcccc
Confidence            122222211111111111    257889999999998774

>cd03670 ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose to AMP and ribose-5-P

Probab=99.32  E-value=1.7e-11  Score=107.69  Aligned_cols=43  Identities=23%  Similarity=0.305  Sum_probs=39.6

Q ss_pred             CEEEEEEeeCCCcEEcccccCCCCCCHHHHHHHHHHHHhCCcc
Q 020742          120 ERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDV  162 (322)
Q Consensus       120 ~kvLLvrr~~~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v  162 (322)
                      .+||+++|...+.|.||||+++.||++.+||.||+.||||+.+
T Consensus        49 l~vLl~~r~~~g~walPGG~v~~~E~~~~aa~Rel~EEt~l~l   91 (186)
T cd03670          49 LQFVAIKRPDSGEWAIPGGMVDPGEKISATLKREFGEEALNSL   91 (186)
T ss_pred             eEEEEEEeCCCCcCcCCeeeccCCCCHHHHHHHHHHHHHcccc
Confidence            3899999987899999999999999999999999999997654

Like other members of the Nudix hydrolase superfamily of enzymes, it is thought to require a divalent cation, such as Mg2+, for its activity. It also contains a 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). ADPRase-m is also known as NUDT9. It can be distinugished from the cytosolic ADPRase by a N-terminal target sequence unique to mitochondrial ADPRase. NUDT9 functions as a monomer.

>KOG2839 consensus Diadenosine and diphosphoinositol polyphosphate phosphohydrolase [Signal transduction mechanisms]

Probab=99.32  E-value=3.4e-12  Score=105.64  Aligned_cols=111  Identities=24%  Similarity=0.340  Sum_probs=77.6

Q ss_pred             cccEEEEEEEeCCCC--EEEEEEeeC-CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeeee---ecccCe-
Q 020742          106 RVPVTGAIILDETYE--RCILVKGWK-GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFI---EKIFGQ-  178 (322)
Q Consensus       106 ~v~v~g~Iv~~~~~~--kvLLvrr~~-~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~~---~~~~~~-  178 (322)
                      ...++|+|.+.-+..  +|||+...+ +..|-+|+|++|+||+..+||.||+.||.|+.......+..+.   ...... 
T Consensus         8 ~r~vagCi~~r~~~~~ieVLlvsSs~~~~~wi~PKGGwE~dE~~~eAA~REt~EEAGv~G~l~~~~~g~~~~~~~~~~~~   87 (145)
T KOG2839|consen    8 FRLVAGCICYRSDKEKIEVLLVSSSKKPHRWIVPKGGWEPDESVEEAALRETWEEAGVKGKLGRLLGGFEDFLSKKHRTK   87 (145)
T ss_pred             cEEEEEeeeeeecCcceEEEEEecCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHhCceeeeeccccchhhccChhhccc
Confidence            345778888776655  899999877 8899999999999999999999999999999776544333322   222211 


Q ss_pred             EEEEEEEEEeecCCCCCCCCCccceeeEEEEeccccccc
Q 020742          179 QRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  217 (322)
Q Consensus       179 ~~~~~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~  217 (322)
                      ....+|.+ .+.+....-|....+..+..|+.++|..+.
T Consensus        88 ~k~~~~~l-~v~e~le~wp~~~~~~r~r~W~~ledA~~~  125 (145)
T KOG2839|consen   88 PKGVMYVL-AVTEELEDWPESEHEFREREWLKLEDAIEL  125 (145)
T ss_pred             ccceeehh-hhhhhcccChhhhcccceeEEeeHHHHHHH
Confidence            12234443 333333323444556889999999998763

>KOG3084 consensus NADH pyrophosphatase I of the Nudix family of hydrolases [Replication, recombination and repair]

Probab=99.27  E-value=6.3e-13  Score=122.52  Aligned_cols=114  Identities=18%  Similarity=0.231  Sum_probs=79.7

Q ss_pred             cCCcccccEEEEEEEeCCCCEEEEEEeeC--CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeeeeecccCe
Q 020742          101 TSYKVRVPVTGAIILDETYERCILVKGWK--GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQ  178 (322)
Q Consensus       101 ~~y~~~v~v~g~Iv~~~~~~kvLLvrr~~--~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~~~~~~~~  178 (322)
                      +.|...=|+|..+|.+.++.++||.|+.+  +|.|..++|.+|+|||++|||+||++||||++++.+.+.....-+.+..
T Consensus       181 ~~yPr~dPvVIm~li~~d~~~~LL~R~~r~~~gl~t~lAGFlEpGES~eeav~REtwEEtGi~V~~I~~~asQPWP~~p~  260 (345)
T KOG3084|consen  181 VIYPRTDPVVIMLLIDHDGKHALLGRQKRYPPGLWTCLAGFLEPGESIEEAVRRETWEETGIEVEVISYVASQPWPLMPQ  260 (345)
T ss_pred             eeccCCCCeEEEEEEcCCCCEeeeecccCCCCchhhhhhccCCccccHHHHHHHHHHHHhCceeeeEeeeecCCCCCCch
Confidence            45666667777778888888999998766  8999999999999999999999999999999999876544322121222


Q ss_pred             EEEE-EEEEEeecCCCCCCCCCccceeeEEEEecccccc
Q 020742          179 QRVR-LYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQP  216 (322)
Q Consensus       179 ~~~~-~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~  216 (322)
                      ..+. ++-+....  .......+.|..+.+|++-+++.+
T Consensus       261 SLMIgc~ala~~~--~~I~vd~dlEleDaqwF~r~ev~~  297 (345)
T KOG3084|consen  261 SLMIGCLALAKLN--GKISVDKDLELEDAQWFDREEVKS  297 (345)
T ss_pred             HHHHHHHHHHhhC--CccccCcchhhhhcccccHHHHHH
Confidence            2111 11111111  222222234889999999998866

>KOG3041 consensus Nucleoside diphosphate-sugar hydrolase of the MutT (NUDIX) family [Replication, recombination and repair]

Probab=99.14  E-value=1.4e-10  Score=100.48  Aligned_cols=144  Identities=19%  Similarity=0.166  Sum_probs=91.4

Q ss_pred             CCCcchHHHHHHHHhCCCCcccccccchhHHHhhhcCCcccccEEEEEEE-e-CCCCEEEEEEeeC----CCcEEccccc
Q 020742           66 SLKSFTLKEFTSLMFNSCDVLRPYVAHIDDIFKDFTSYKVRVPVTGAIIL-D-ETYERCILVKGWK----GSSWSFPRGK  139 (322)
Q Consensus        66 ~l~~~~l~~f~~~l~~~~~~l~~~~~~~~~~~~~~~~y~~~v~v~g~Iv~-~-~~~~kvLLvrr~~----~~~w~fPgG~  139 (322)
                      .++|.++++...+-..|....+.-..+       -.+-..+++.+++|.+ . ++...++|+++.+    +-..++|+|-
T Consensus        39 ~~kWi~Lkkv~~qD~~GKir~wes~~R-------ttr~ea~~dgVaIl~il~~dG~~~ivL~kQfRpP~Gk~ciElPAGL  111 (225)
T KOG3041|consen   39 DGKWIRLKKVLYQDPTGKIRDWESVQR-------TTRVEARADGVAILAILESDGKPYIVLVKQFRPPTGKICIELPAGL  111 (225)
T ss_pred             CccEEEEEEEEEEcCCCceeeeehhee-------cccccccCCeEEEEEEEecCCcEEEEEEEeecCCCCcEEEEccccc
Confidence            467777776665555555444433222       1223335666666643 2 2223899999988    4567899999


Q ss_pred             CCCCCCHHHHHHHHHHHHhCCcccce-eeeeeeeecccCeEEEEE--EEEEee-cCCCCCC-CCCccceeeEEEEecccc
Q 020742          140 KNKDEEDHACAIREVQEETGFDVSKL-LNKDEFIEKIFGQQRVRL--YIIAGV-RDDTAFA-PQTKKEISEIAWQRLDEL  214 (322)
Q Consensus       140 ie~gEs~~eaA~REv~EETGl~v~~l-~~~~~~~~~~~~~~~~~~--y~~~~~-~~~~~~~-~~~~~Ei~~~~Wv~ldeL  214 (322)
                      |+.||+++.||+||++||||+..... .....|..++.++....+  +.+.+. ++++... ..+..|..++.-+++.+|
T Consensus       112 iD~ge~~~~aAiREl~EEtGy~gkv~~~s~~~f~DPGltn~~~~iv~v~idg~~pEnqrp~q~ledgEfIev~~i~~~~L  191 (225)
T KOG3041|consen  112 IDDGEDFEGAAIRELEEETGYKGKVDMVSPTVFLDPGLTNCNLCIVVVDIDGDVPENQRPVQQLEDGEFIEVFLIPLSEL  191 (225)
T ss_pred             ccCCCchHHHHHHHHHHHhCccceeeeccccEEcCCCCCCCceEEEEEEecCCCccccCccccCCCCceEEEEEeeHHHH
Confidence            99999999999999999999984432 233445556655444333  333222 2222222 234678889999999888


Q ss_pred             cc
Q 020742          215 QP  216 (322)
Q Consensus       215 ~~  216 (322)
                      .+
T Consensus       192 ~~  193 (225)
T KOG3041|consen  192 WR  193 (225)
T ss_pred             HH
Confidence            76

>PLN02552 isopentenyl-diphosphate delta-isomerase

Probab=99.13  E-value=3.6e-10  Score=103.46  Aligned_cols=109  Identities=14%  Similarity=0.175  Sum_probs=70.5

Q ss_pred             cccEEEEEEEeCCCCEEEEEEeeC-----CCcEEcc-cccCCCCCC-----------------HHHHHHHHHHHHhCCcc
Q 020742          106 RVPVTGAIILDETYERCILVKGWK-----GSSWSFP-RGKKNKDEE-----------------DHACAIREVQEETGFDV  162 (322)
Q Consensus       106 ~v~v~g~Iv~~~~~~kvLLvrr~~-----~~~w~fP-gG~ie~gEs-----------------~~eaA~REv~EETGl~v  162 (322)
                      .+.++.++|+|.++ ++||.||..     +|.|+.. +|++..||+                 ..+||+||++|||||.+
T Consensus        55 ~Hra~~v~i~n~~g-~lLLQkRs~~K~~~Pg~Wd~s~~GHp~~ge~~~e~~~e~~~~~~~~~~~~eAA~REL~EElGI~~  133 (247)
T PLN02552         55 LHRAFSVFLFNSKY-ELLLQQRAATKVTFPLVWTNTCCSHPLYGQDPNEVDRESELIDGNVLGVKNAAQRKLLHELGIPA  133 (247)
T ss_pred             eEEEEEEEEEcCCC-eEEEEEecCCCCCCCcceecccCCccccccccccccccccccccchhhHHHHHHhHHHHHhCCCc
Confidence            34678899999885 999999976     6799664 344444322                 67899999999999986


Q ss_pred             cc-----eeeeeeeee--ccc----------CeEEEEEEEEEeecCCCCCCCCCccceeeEEEEeccccccc
Q 020742          163 SK-----LLNKDEFIE--KIF----------GQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  217 (322)
Q Consensus       163 ~~-----l~~~~~~~~--~~~----------~~~~~~~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~  217 (322)
                      ..     +..+..+..  ...          .+...++|+.... ....+.+ +++|+.++.|++++++.++
T Consensus       134 ~~~~~~~l~~~~~~~y~~~~~~~~~~~~~~~E~e~~~v~~~~~~-~~~~l~l-q~eEV~~~~wvs~~el~~~  203 (247)
T PLN02552        134 EDVPVDQFTFLTRLHYKAADDVTHGPDGKWGEHELDYLLFIRPV-RDVKVNP-NPDEVADVKYVNREELKEM  203 (247)
T ss_pred             cccccccceeeeEEEEecccccccccCCCccceEEEEEEEEEec-CCCcccC-CHHHhheEEEEeHHHHHHH
Confidence            43     333332211  111          1334444443222 2223333 4689999999999999985

>PLN02791 Nudix hydrolase homolog

Probab=99.08  E-value=6.2e-10  Score=115.68  Aligned_cols=110  Identities=18%  Similarity=0.305  Sum_probs=78.2

Q ss_pred             ccEEEEEEEeCCCCEEEEEEeeC-----CCcEEc-ccccCCCCCCHHHHHHHHHHHHhCCcccc--eeeeeeeee----c
Q 020742          107 VPVTGAIILDETYERCILVKGWK-----GSSWSF-PRGKKNKDEEDHACAIREVQEETGFDVSK--LLNKDEFIE----K  174 (322)
Q Consensus       107 v~v~g~Iv~~~~~~kvLLvrr~~-----~~~w~f-PgG~ie~gEs~~eaA~REv~EETGl~v~~--l~~~~~~~~----~  174 (322)
                      +.++.+.|++.+.++|||.||..     +|.|++ ||||++.||+..+||+||+.||+|+.+..  +..+..+..    .
T Consensus        32 HrAvhVwIfn~~~gelLLQkRS~~K~~~PG~WDiS~gGHv~aGEs~~eAA~REL~EELGI~l~~~~l~~l~~~~~~~~~~  111 (770)
T PLN02791         32 HRAVHVWIYSESTQELLLQRRADCKDSWPGQWDISSAGHISAGDTSLLSAQRELEEELGIILPKDAFELLFVFLQECVIN  111 (770)
T ss_pred             eEEEEEEEEECCCCeEEEEEecCCCCCCCCcccCcCCCCCCCCCCHHHHHHHHHHHHhCCCCChhheeeeeeEEEEeecc
Confidence            45777888886435999999966     899999 79999999999999999999999998642  333332211    0


Q ss_pred             --c-cCeEEEEEEEEEeecCC--CCCCCCCccceeeEEEEeccccccc
Q 020742          175 --I-FGQQRVRLYIIAGVRDD--TAFAPQTKKEISEIAWQRLDELQPA  217 (322)
Q Consensus       175 --~-~~~~~~~~y~~~~~~~~--~~~~~~~~~Ei~~~~Wv~ldeL~~~  217 (322)
                        . ..+...++|++..+...  ..+.+ .++|+.++.|++++++.++
T Consensus       112 ~g~~~e~E~~~VYlv~~~~~~p~~~~~l-q~eEV~~v~wvsl~El~~~  158 (770)
T PLN02791        112 DGKFINNEYNDVYLVTTLDPIPLEAFTL-QESEVSAVKYMSIEEYKSA  158 (770)
T ss_pred             CCCcceeeEEEEEEEEECCCCCcccCCC-ChhhhheeEEEcHHHHHHH
Confidence              1 22355667776532221  12333 4689999999999999753

>KOG3069 consensus Peroxisomal NUDIX hydrolase [Replication, recombination and repair]

Probab=98.96  E-value=2.4e-09  Score=95.46  Aligned_cols=97  Identities=20%  Similarity=0.225  Sum_probs=65.5

Q ss_pred             CEEEEEEeeC-----CCcEEcccccCCC-CCCHHHHHHHHHHHHhCCcccceeeeeeeeeccc-CeEEEEEEEEEeecCC
Q 020742          120 ERCILVKGWK-----GSSWSFPRGKKNK-DEEDHACAIREVQEETGFDVSKLLNKDEFIEKIF-GQQRVRLYIIAGVRDD  192 (322)
Q Consensus       120 ~kvLLvrr~~-----~~~w~fPgG~ie~-gEs~~eaA~REv~EETGl~v~~l~~~~~~~~~~~-~~~~~~~y~~~~~~~~  192 (322)
                      .+|||.||.+     .|.-.||||+.+. +++...||.||++||+|++...+..++....... ....+.-+++......
T Consensus        58 l~vLltkRSr~LrshsGev~fPGG~~d~~D~s~~~tAlREt~EEIGl~~~~~~~~g~l~~~~~r~~~~v~p~v~~l~~~~  137 (246)
T KOG3069|consen   58 LSVLLTKRSRTLRSHSGEVCFPGGRRDPHDKSDIQTALRETEEEIGLDPELVDVLGALPPFVLRSGWSVFPVVGFLSDKK  137 (246)
T ss_pred             eEEEEEeccccccccCCceeCCCCcCCccccchHHHHHHHHHHHhCCCHHHhhhhhhccceeeccCcccceeEEEEeccc
Confidence            4899999877     7999999999998 6788899999999999999876544443211100 1112222222222211


Q ss_pred             C-CCCCCCccceeeEEEEecccccc
Q 020742          193 T-AFAPQTKKEISEIAWQRLDELQP  216 (322)
Q Consensus       193 ~-~~~~~~~~Ei~~~~Wv~ldeL~~  216 (322)
                      . ........|+.++.|+|++++..
T Consensus       138 ~l~~~~ln~gEv~~~F~VPL~~ll~  162 (246)
T KOG3069|consen  138 ILPSLRLNSGEVESAFWVPLTDLLL  162 (246)
T ss_pred             ccccccCCchheeeeeeeeHHHHhh
Confidence            1 11234578999999999999976

>KOG2937 consensus Decapping enzyme complex, predicted pyrophosphatase DCP2 [RNA processing and modification]

Probab=98.82  E-value=2.3e-10  Score=106.28  Aligned_cols=149  Identities=23%  Similarity=0.419  Sum_probs=123.4

Q ss_pred             CCCchhHHHhhhhhhhccCChhhhhchHHHHHHHhhhheeeeeCCccC--CCCCCcchHHHHHHHHhCCCCcccccccch
Q 020742           16 GLPPQELLDDLCSRFVLNVPQEDQQSFERILFLVEYAHWFYEDNSVEN--NPSLKSFTLKEFTSLMFNSCDVLRPYVAHI   93 (322)
Q Consensus        16 ~~~~~~~l~dl~~Rfi~n~p~~~~~~~~rl~f~ie~a~w~y~d~~~~~--~p~l~~~~l~~f~~~l~~~~~~l~~~~~~~   93 (322)
                      .-+.-.|.|.+..|||+|.=.++.+.-.|+++-|+.+||||.|...+-  .-.++.+.-+++-..++..+..+..+..++
T Consensus       145 e~Ie~nI~dq~~~~fIi~gvs~d~~f~~~v~~eis~ihW~~l~~l~~t~~~s~~k~~~~~dk~~~~~~~l~vlkk~~~k~  224 (348)
T KOG2937|consen  145 EGIETNIRDQLVRLFIINGVSEDTNFNPRVRKEISKIHWHYLDHLVPTDKKSGPKGVKSRDKNYMVCPFLRVLKKWILKA  224 (348)
T ss_pred             cCcccchhhceeeeeeeccceeeeecchhhhccccceeeeehhhhcccccccCCCccccchhhcccchHHHHHHHHHHhc
Confidence            345678999999999999999999988999999999999999987443  223555555555556666666677777788


Q ss_pred             hHHHhhhcCCcccccEEEEEEEeCCCCEEEEEEeeC--CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccc
Q 020742           94 DDIFKDFTSYKVRVPVTGAIILDETYERCILVKGWK--GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSK  164 (322)
Q Consensus        94 ~~~~~~~~~y~~~v~v~g~Iv~~~~~~kvLLvrr~~--~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~  164 (322)
                      +.....+..++..+++.+.++.+-.++....++.+.  +..|.||.|+++.||-+..+++|+..||+|+....
T Consensus       225 ~~~vak~~e~~~~~~tl~~~~t~v~~d~~~~aqS~~~~~e~~~~~~~k~sr~e~~r~~si~s~~~e~~f~~~s  297 (348)
T KOG2937|consen  225 DEVVAKFPEKKSTVPTLGAALTDVEMDHVVTAQSYFAKPENWTFPKGKISRGEKPRDASIRSTFEEPGFPFGS  297 (348)
T ss_pred             cchhhcCcccCccchhHHhhhhccccccceeecccccccccccCcccccccCCccccchhhhcCCCcCCcccc
Confidence            899999999999999999998877666677777665  78999999999999999999999999999998765

>KOG0648 consensus Predicted NUDIX hydrolase FGF-2 and related proteins [Signal transduction mechanisms]

Probab=98.78  E-value=2.9e-09  Score=98.48  Aligned_cols=112  Identities=23%  Similarity=0.424  Sum_probs=77.3

Q ss_pred             CcccccEEEEEEEeCCCCEEEEEEeeC-----CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceee--eeeeeecc
Q 020742          103 YKVRVPVTGAIILDETYERCILVKGWK-----GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLN--KDEFIEKI  175 (322)
Q Consensus       103 y~~~v~v~g~Iv~~~~~~kvLLvrr~~-----~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~--~~~~~~~~  175 (322)
                      +....-.+|+.|+|.. ++||+|+...     .|.|-+|+|.|+++|++.+.|+||++||||++......  +..-....
T Consensus       111 ~Ash~vgvg~~V~n~~-~eVlVv~e~d~~~~~~~~wK~ptG~v~~~e~i~~gavrEvkeetgid~ef~eVla~r~~H~~~  189 (295)
T KOG0648|consen  111 NASHRVGVGAFVLNKK-KEVLVVQEKDGAVKIRGGWKLPTGRVEEGEDIWHGAVREVKEETGIDTEFVEVLAFRRAHNAT  189 (295)
T ss_pred             chhhheeeeeeEecCC-ceeEEEEecccceeecccccccceEecccccchhhhhhhhHHHhCcchhhhhHHHHHhhhcch
Confidence            3344456788888887 5999998633     79999999999999999999999999999996654222  11111112


Q ss_pred             cCeEEEEEEEEEeecCCCCCC-CCCccceeeEEEEecccccc
Q 020742          176 FGQQRVRLYIIAGVRDDTAFA-PQTKKEISEIAWQRLDELQP  216 (322)
Q Consensus       176 ~~~~~~~~y~~~~~~~~~~~~-~~~~~Ei~~~~Wv~ldeL~~  216 (322)
                      +......+|+++.+.. ..+. .....|+..++|+++++...
T Consensus       190 ~~~~ksd~f~~c~L~p-~s~~i~~~~~ei~~~~Wmp~~e~v~  230 (295)
T KOG0648|consen  190 FGLIKSDMFFTCELRP-RSLDITKCKREIEAAAWMPIEEYVS  230 (295)
T ss_pred             hhcccccceeEEEeec-cccccchhHHHHHHHhcccHHHhhc
Confidence            2222455666666654 2222 22356788889999997755

>cd03431 DNA_Glycosylase_C DNA glycosylase (MutY in bacteria and hMYH in humans) is responsible for repairing misread A*oxoG residues to C*G by removing the inappropriately paired adenine base from the DNA backbone

Probab=98.75  E-value=1.2e-07  Score=75.95  Aligned_cols=95  Identities=16%  Similarity=0.292  Sum_probs=61.7

Q ss_pred             EEEEEEEeCCCCEEEEEEeeC----CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeeeeecccCe--EEEE
Q 020742          109 VTGAIILDETYERCILVKGWK----GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQ--QRVR  182 (322)
Q Consensus       109 v~g~Iv~~~~~~kvLLvrr~~----~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~~~~~~~~--~~~~  182 (322)
                      .+++|+.+ + +++||.||..    +|.|+||+|.++.+|+..++..||+.||.++....   +..+ .+.+.+  ..++
T Consensus         5 ~~~~ii~~-~-~~~ll~kR~~~gl~~glwefP~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~H~fth~~~~~~   78 (118)
T cd03431           5 IAVVVIRN-D-GRVLLEKRPEKGLLAGLWEFPSVEWEEEADGEEALLSALKKALRLSLEP---LGTV-KHTFTHFRLTLH   78 (118)
T ss_pred             EEEEEEec-C-CeEEEEECCCCCCCCcceeCCCccccCCcCHHHHHHHHHHHHhCccccc---ceeE-EEecCCeEEEEE
Confidence            34455544 3 4899999965    89999999999999999999999999987641111   1111 112222  3455


Q ss_pred             EEEEEeecCCCCCCCCCccceeeEEEEeccccccc
Q 020742          183 LYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  217 (322)
Q Consensus       183 ~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~  217 (322)
                      +|.+....+.        .+..+..|++++++..+
T Consensus        79 ~~~~~~~~~~--------~~~~~~~W~~~eel~~~  105 (118)
T cd03431          79 VYLARLEGDL--------LAPDEGRWVPLEELDEY  105 (118)
T ss_pred             EEEEEEeCCC--------cCccccEEccHHHHhhC
Confidence            5655432221        23356789999998873

It belongs to the Nudix hydrolase superfamily and is important for the repair of various genotoxic lesions. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity. They are also recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V). However, DNA glycosylase does not seem to contain this signature motif. DNA glycosylase consists of 2 domains: the N-terminal domain contains the catalytic properties of the enzyme and the C-terminal domain affects substrate (oxoG) binding and enzymatic turnover. The C-terminal domain is highly similar to MutT, based on secondary structure and topology, despite low sequence identity. MutT sanitizes the nucleotide precursor pool by hydrolyzing oxo-dGTP to

>COG4119 Predicted NTP pyrophosphohydrolase [DNA replication, recombination, and repair / General function prediction only]

Probab=98.63  E-value=1.3e-07  Score=76.57  Aligned_cols=104  Identities=20%  Similarity=0.335  Sum_probs=67.1

Q ss_pred             EEEEEEEeCCCC--EEEEEEeeC-------CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccc-eeeeeeeeecccCe
Q 020742          109 VTGAIILDETYE--RCILVKGWK-------GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSK-LLNKDEFIEKIFGQ  178 (322)
Q Consensus       109 v~g~Iv~~~~~~--kvLLvrr~~-------~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~-l~~~~~~~~~~~~~  178 (322)
                      .+|++++....+  .||||.--.       .|-|++|+|....||++..||.||..||+||.+.- .+.++.+...  +.
T Consensus         5 SAGvLlYR~~aG~v~VLLvHPGGPFWa~kD~GAWSIPKGey~~gEdp~~AArREf~EE~Gi~vdGP~~~lG~~kQ~--GG   82 (161)
T COG4119           5 SAGVLLYRARAGVVDVLLVHPGGPFWAGKDDGAWSIPKGEYTGGEDPWLAARREFSEEIGICVDGPRIDLGSLKQS--GG   82 (161)
T ss_pred             cceeEEEEecCCCEEEEEecCCCCccccCCCCcccccccccCCCcCHHHHHHHHhhhhhceeecCchhhhhhhccC--CC
Confidence            457777654322  677775321       68999999999999999999999999999998863 4455544322  22


Q ss_pred             EEEEEEEEEee----------------cCCCCCCCCCccceeeEEEEecccccc
Q 020742          179 QRVRLYIIAGV----------------RDDTAFAPQTKKEISEIAWQRLDELQP  216 (322)
Q Consensus       179 ~~~~~y~~~~~----------------~~~~~~~~~~~~Ei~~~~Wv~ldeL~~  216 (322)
                      ..+..|-+...                +...  .-..-.|++.+.||++.+...
T Consensus        83 KvVta~~veae~Dva~~rSntFe~eWPprSG--~M~~FPEVDRagWF~l~eAr~  134 (161)
T COG4119          83 KVVTAFGVEAELDVADARSNTFELEWPPRSG--KMRKFPEVDRAGWFPLAEART  134 (161)
T ss_pred             cEEEEEeeeeeeehhhhhcceeeeecCCCCC--ccccCcccccccceecHHHHh
Confidence            33333333211                1111  111235788899999988754

>PRK10880 adenine DNA glycosylase; Provisional

Probab=98.29  E-value=6.8e-06  Score=79.09  Aligned_cols=134  Identities=13%  Similarity=0.118  Sum_probs=79.2

Q ss_pred             CccCCCCCCcchHHHHHHHHhCCCCcccccccchhHHHhhhcCCcccccEEEEEEEeCCCCEEEEEEeeC----CCcEEc
Q 020742           60 SVENNPSLKSFTLKEFTSLMFNSCDVLRPYVAHIDDIFKDFTSYKVRVPVTGAIILDETYERCILVKGWK----GSSWSF  135 (322)
Q Consensus        60 ~~~~~p~l~~~~l~~f~~~l~~~~~~l~~~~~~~~~~~~~~~~y~~~v~v~g~Iv~~~~~~kvLLvrr~~----~~~w~f  135 (322)
                      |++++|.|..|+++..|...-++....+|+..+        ++..+......+|+.++  +++||.||..    +|.|+|
T Consensus       192 C~p~~P~C~~Cpl~~~C~~~~~~~~~~~P~k~~--------k~~~~~~~~~~~~~~~~--~~~~l~~r~~~gl~~gl~~f  261 (350)
T PRK10880        192 CTRSKPKCELCPLQNGCIAYANHSWALYPGKKP--------KQTLPERTGYFLLLQHG--DEVWLEQRPPSGLWGGLFCF  261 (350)
T ss_pred             ccCCCCCCCCCccHhhhHHHHcCCHhhCCCCCC--------CCCCCeEEEEEEEEEEC--CEEEEEECCccChhhccccC
Confidence            788999999999999999998888888887654        33333333333344343  4899999865    899999


Q ss_pred             ccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeeeeecccCeEEEEE--EEEEeecCCCCCCCCCccceeeEEEEeccc
Q 020742          136 PRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQQRVRL--YIIAGVRDDTAFAPQTKKEISEIAWQRLDE  213 (322)
Q Consensus       136 PgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~~~~~~~~~~~~~--y~~~~~~~~~~~~~~~~~Ei~~~~Wv~lde  213 (322)
                      |..  +. +    ...++..|+.|+.......+..+ .+.+.+..+++  |.+.. ....   .....  .+..|+++++
T Consensus       262 P~~--~~-~----~~~~~~~~~~~~~~~~~~~~~~~-~H~fTH~~~~~~~~~~~~-~~~~---~~~~~--~~~~w~~~~~  327 (350)
T PRK10880        262 PQF--AD-E----EELRQWLAQRGIAADNLTQLTAF-RHTFSHFHLDIVPMWLPV-SSFT---GCMDE--GNGLWYNLAQ  327 (350)
T ss_pred             CCC--cc-h----hhHHHHHHhcCCchhhhcccCce-EEEEeeEEEEEEEEEEEc-cccc---cccCC--cCCeEechHH
Confidence            963  21 1    12466668888753322212221 22334444443  33322 1110   00001  2335999999


Q ss_pred             cccc
Q 020742          214 LQPA  217 (322)
Q Consensus       214 L~~~  217 (322)
                      +...
T Consensus       328 ~~~~  331 (350)
T PRK10880        328 PPSV  331 (350)
T ss_pred             hccc
Confidence            8873

>PF14815 NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3FSQ_A 1RRS_A 3FSP_A

Probab=98.15  E-value=1.5e-05  Score=64.11  Aligned_cols=96  Identities=22%  Similarity=0.410  Sum_probs=52.3

Q ss_pred             EEEEeCCCCEEEEEEeeC----CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeeeeecccCeE--EEEEEE
Q 020742          112 AIILDETYERCILVKGWK----GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQQ--RVRLYI  185 (322)
Q Consensus       112 ~Iv~~~~~~kvLLvrr~~----~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~~~~~~~~~--~~~~y~  185 (322)
                      +++.+.+ +++||.||..    +|+|+||.-.++. ++..+.+.+.+.+..|+.+.....+..+ .+.+.+.  .+++|.
T Consensus         2 ~~i~~~~-~~~Ll~kRp~~gll~GLwefP~~e~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~v-~H~fSH~~~~~~~~~   78 (114)
T PF14815_consen    2 LLIIRSQ-GRVLLEKRPEKGLLAGLWEFPLIESDE-EDDEEELEEWLEEQLGLSIRSVEPLGTV-KHVFSHRRWTIHVYE   78 (114)
T ss_dssp             EEEEETT-SEEEEEE--SSSTTTT-EE--EEE-SS-S-CHHHHHHHTCCSSS-EEEE-S-SEEE-EEE-SSEEEEEEEEE
T ss_pred             EEEEEeC-CEEEEEECCCCChhhcCcccCEeCccC-CCCHHHHHHHHHHHcCCChhhheecCcE-EEEccceEEEEEEEE
Confidence            4555555 4999999987    8999999988874 4445666666667788776554444433 2233443  455566


Q ss_pred             EEeecCCCCCCCCCccceeeEEEEeccccccc
Q 020742          186 IAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  217 (322)
Q Consensus       186 ~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~  217 (322)
                      +......    .   .+..+..|++.+++.++
T Consensus        79 ~~~~~~~----~---~~~~~~~W~~~~~l~~~  103 (114)
T PF14815_consen   79 VEVSADP----P---AEPEEGQWVSLEELDQY  103 (114)
T ss_dssp             EEEE-SS-----------TTEEEEEGGGGGGS
T ss_pred             EEecCCC----C---CCCCCcEEEEHHHHhhC
Confidence            5443332    1   13467889999999873

>COG1443 Idi Isopentenyldiphosphate isomerase [Lipid metabolism]

Probab=98.07  E-value=7.3e-06  Score=70.28  Aligned_cols=105  Identities=14%  Similarity=0.228  Sum_probs=73.7

Q ss_pred             cEEEEEEEeCCCCEEEEEEeeC-----CCcEEc-ccccCCCCCCHHHHHHHHHHHHhCCcccc--eee-eee--eeec--
Q 020742          108 PVTGAIILDETYERCILVKGWK-----GSSWSF-PRGKKNKDEEDHACAIREVQEETGFDVSK--LLN-KDE--FIEK--  174 (322)
Q Consensus       108 ~v~g~Iv~~~~~~kvLLvrr~~-----~~~w~f-PgG~ie~gEs~~eaA~REv~EETGl~v~~--l~~-~~~--~~~~--  174 (322)
                      .+..+.|+|+++ ++||.||..     .+.|.- -.||--+||+..+||+|-+.+|+||++..  ... +..  |...  
T Consensus        34 rAFS~~lFne~g-~LLltrRA~~K~twP~vWTNSvCsHP~~~es~~~A~~rRl~~ELGie~~~~d~~~il~rf~YrA~~~  112 (185)
T COG1443          34 RAFSSFLFNERG-QLLLTRRALSKKTWPGVWTNSVCSHPLPGESNEDAARRRLAYELGIEPDQYDKLEILPRFRYRAADP  112 (185)
T ss_pred             hhhheeEECCCC-ceeeehhhhhcccCcccccccccCCCcCCCchHHHHHHHHHHHhCCCCcccCccccccceEEeccCC
Confidence            456789999985 899998864     566654 46888899999999999999999999883  221 111  2111  


Q ss_pred             --ccCeEEEEEEEEEeecCCCCCCCCCccceeeEEEEeccccccc
Q 020742          175 --IFGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  217 (322)
Q Consensus       175 --~~~~~~~~~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~  217 (322)
                        ...+....++++....   .+.+ +++|+.+++|++.+++.++
T Consensus       113 ~~~~E~Eic~V~~~~~~~---~~~~-npdEV~~~~wv~~e~l~~~  153 (185)
T COG1443         113 DGIVENEICPVLAARLDS---ALDP-NPDEVMDYRWVSPEDLKEM  153 (185)
T ss_pred             CCcceeeeeeEEEEeecC---CCCC-ChHHhhheeccCHHHHHHh
Confidence              1234455555554332   2333 4699999999999999874

>PLN02839 nudix hydrolase

Probab=97.98  E-value=3.5e-05  Score=73.90  Aligned_cols=95  Identities=9%  Similarity=0.090  Sum_probs=61.8

Q ss_pred             CEEEEEEeeC-----CCcEEc-ccccCCCCCCHHHHHHHHHHHHhCCccc---ceeeeeee--ee-cccC--eEEEEEEE
Q 020742          120 ERCILVKGWK-----GSSWSF-PRGKKNKDEEDHACAIREVQEETGFDVS---KLLNKDEF--IE-KIFG--QQRVRLYI  185 (322)
Q Consensus       120 ~kvLLvrr~~-----~~~w~f-PgG~ie~gEs~~eaA~REv~EETGl~v~---~l~~~~~~--~~-~~~~--~~~~~~y~  185 (322)
                      .++.+.||..     +|+|+- .+|++..||++.+|++||+.||.|+...   .+...+..  .. ...+  .....+|-
T Consensus       218 ~~lWV~RRS~tK~t~PGmLDn~VAGGi~aGesp~etliREa~EEAgLp~~l~~~~~~~G~VsY~~~~~~g~~~evly~YD  297 (372)
T PLN02839        218 KFLWIGKRSLSKSTYPGMLDHLVAGGLPHGISCGENLVKECEEEAGISKAIADRAIAVGAVSYMDIDQYCFKRDVLFCYD  297 (372)
T ss_pred             eEEEeeccCCCCCCCCChhhhccccCccCCCCHHHHHHHHHHHHcCCCHHHHhcceEeEEEEEEEEcCCccccCEEEEee
Confidence            4677777654     678855 7899999999999999999999999755   23333332  11 1111  12222333


Q ss_pred             EEeecCCCCCCCCCccceeeEEEEecccccc
Q 020742          186 IAGVRDDTAFAPQTKKEISEIAWQRLDELQP  216 (322)
Q Consensus       186 ~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~  216 (322)
                      + .++.+....+ .+.|+.++.+++++++.+
T Consensus       298 L-eLP~df~P~~-qDGEVe~F~Lm~v~EV~~  326 (372)
T PLN02839        298 L-ELPQDFVPKN-QDGEVESFKLIPVAQVAN  326 (372)
T ss_pred             e-ecCCccccCC-CccceeEEEEecHHHHHH
Confidence            2 2233332233 468999999999999976

>TIGR01084 mutY A/G-specific adenine glycosylase

Probab=97.42  E-value=0.00031  Score=65.62  Aligned_cols=70  Identities=11%  Similarity=0.091  Sum_probs=52.6

Q ss_pred             CccCCCCCCcchHHHHHHHHhCCCCcccccccchhHHHhhhcCCcccccEEEEEEEeCCCCEEEEEEeeC----CCcEEc
Q 020742           60 SVENNPSLKSFTLKEFTSLMFNSCDVLRPYVAHIDDIFKDFTSYKVRVPVTGAIILDETYERCILVKGWK----GSSWSF  135 (322)
Q Consensus        60 ~~~~~p~l~~~~l~~f~~~l~~~~~~l~~~~~~~~~~~~~~~~y~~~v~v~g~Iv~~~~~~kvLLvrr~~----~~~w~f  135 (322)
                      |++++|.|..|++++.|.....+....+|+..+        ++.........+++.+.+ +++||++|..    +|.|+|
T Consensus       188 C~~~~P~C~~Cpl~~~C~~~~~~~~~~~p~~~~--------~~~~~~~~~~~~~~~~~~-~~~~~~~r~~~~~~~gl~~~  258 (275)
T TIGR01084       188 CTRKKPKCDLCPLQDFCLAYQQGTWEEYPVKKP--------KAAPPERTTYFLVLQNYD-GEVLLEQRPEKGLWGGLYCF  258 (275)
T ss_pred             cCCCCCCCCCCCChhhCHHHHcCCHhhcCCCCC--------CCCCCeEEEEEEEEEeCC-CeEEEEeCCCCchhhccccC
Confidence            888999999999999999988888887876654        333333444445555544 4899999865    899999


Q ss_pred             ccc
Q 020742          136 PRG  138 (322)
Q Consensus       136 PgG  138 (322)
                      |+.
T Consensus       259 p~~  261 (275)
T TIGR01084       259 PQF  261 (275)
T ss_pred             CCC
Confidence            974

This equivalog model identifies mutY members of the pfam00730 superfamily (HhH-GPD: Helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate). The major members of the superfamily are nth and mutY.

>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]

Probab=97.36  E-value=0.00056  Score=63.35  Aligned_cols=86  Identities=20%  Similarity=0.337  Sum_probs=65.4

Q ss_pred             CcccccEEEEEEEeCCCCEEEEEEeeC-----------------------------CCcEEcccccCCCCCCHHHHHHHH
Q 020742          103 YKVRVPVTGAIILDETYERCILVKGWK-----------------------------GSSWSFPRGKKNKDEEDHACAIRE  153 (322)
Q Consensus       103 y~~~v~v~g~Iv~~~~~~kvLLvrr~~-----------------------------~~~w~fPgG~ie~gEs~~eaA~RE  153 (322)
                      +..++..+.+|+++.+..++||||+.+                             +-..++-+|-|+++-++.+-|..|
T Consensus        22 ~~q~~~~v~ill~~r~~eq~l~vrqfr~ai~~~~~s~~~~~~~~~~~d~~~~~~e~g~tielc~g~idke~s~~eia~ee  101 (405)
T KOG4432|consen   22 FNQKMSSVSILLFHRDLEQFLLVRQFRPAIFTASNSPENHGKEFDKIDWSSYDSETGYTIELCAGLIDKELSPREIASEE  101 (405)
T ss_pred             HHhhccceEEEEEccchhhhehhhhhchhheecccCCCCCCcccccccHhhCCCccceeeeeeccccccccCHHHHhHHH
Confidence            344556778899999888999999866                             113456689999999999999999


Q ss_pred             HHHHhCCcccc--eeeeeeeee-cccCeEEEEEEEEEe
Q 020742          154 VQEETGFDVSK--LLNKDEFIE-KIFGQQRVRLYIIAG  188 (322)
Q Consensus       154 v~EETGl~v~~--l~~~~~~~~-~~~~~~~~~~y~~~~  188 (322)
                      |.||+|+++..  ++.+.+|.. ......-.++|++..
T Consensus       102 v~eecgy~v~~d~l~hv~~~~~g~~~s~sa~~l~y~ei  139 (405)
T KOG4432|consen  102 VAEECGYRVDPDDLIHVITFVVGAHQSGSAQHLYYAEI  139 (405)
T ss_pred             HHHHhCCcCChhHceEEEEEEeccccCccchheeeeec
Confidence            99999998865  777777654 233445667888743

>KOG4195 consensus Transient receptor potential-related channel 7 [Inorganic ion transport and metabolism]

Probab=97.20  E-value=0.00037  Score=61.96  Aligned_cols=39  Identities=28%  Similarity=0.375  Sum_probs=36.1

Q ss_pred             EEEEEEeeCCCcEEcccccCCCCCCHHHHHHHHHHHHhC
Q 020742          121 RCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETG  159 (322)
Q Consensus       121 kvLLvrr~~~~~w~fPgG~ie~gEs~~eaA~REv~EETG  159 (322)
                      +++.|||...+.|.+|||.+++||-+..+.+||+.||.=
T Consensus       140 e~vavkr~d~~~WAiPGGmvdpGE~vs~tLkRef~eEa~  178 (275)
T KOG4195|consen  140 EFVAVKRPDNGEWAIPGGMVDPGEKVSATLKREFGEEAM  178 (275)
T ss_pred             EEEEEecCCCCcccCCCCcCCchhhhhHHHHHHHHHHHH
Confidence            678888888999999999999999999999999999963

>COG4112 Predicted phosphoesterase (MutT family) [General function prediction only]

Probab=97.07  E-value=0.005  Score=52.34  Aligned_cols=108  Identities=21%  Similarity=0.357  Sum_probs=65.0

Q ss_pred             CCcccccEEEEEEEeCCCCEEEEEEeeC-------CCcEEc-ccccCCCCC--CH-HH----HHHHHHHHHhCCcccc--
Q 020742          102 SYKVRVPVTGAIILDETYERCILVKGWK-------GSSWSF-PRGKKNKDE--ED-HA----CAIREVQEETGFDVSK--  164 (322)
Q Consensus       102 ~y~~~v~v~g~Iv~~~~~~kvLLvrr~~-------~~~w~f-PgG~ie~gE--s~-~e----aA~REv~EETGl~v~~--  164 (322)
                      .|+..+|-  ++|.+++  +||+-.|-.       .+.+++ -|||++.++  ++ .+    .+.||+.||.|+.-..  
T Consensus        58 ~~KQ~IpY--vvi~~ed--evliyeRltgggE~RLHn~~SlG~GGHmn~~~GA~s~~evLk~n~~REleEEv~vseqd~q  133 (203)
T COG4112          58 TTKQVIPY--VVIMDED--EVLIYERLTGGGEKRLHNLYSLGIGGHMNEGDGATSREEVLKGNLERELEEEVDVSEQDLQ  133 (203)
T ss_pred             cccccccE--EEEecCC--EEEEEEeccCcchhhhccccccccccccccCCCcccHHHHHccchHHHHHHHhCcCHHHhh
Confidence            45555553  6677776  899998865       467887 689999864  22 22    3779999999998554  


Q ss_pred             -eeeeeeeee--cccCeEEEE-EEEEEeecCCCCCCCCCccceeeEEEEecccccc
Q 020742          165 -LLNKDEFIE--KIFGQQRVR-LYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQP  216 (322)
Q Consensus       165 -l~~~~~~~~--~~~~~~~~~-~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~  216 (322)
                       +..++-...  ...+...+. +|....-..+.  .. .+.+...++|+.+.+|.+
T Consensus       134 ~~e~lGlINdd~neVgkVHiG~lf~~~~k~ndv--ev-KEkd~~~~kwik~~ele~  186 (203)
T COG4112         134 ELEFLGLINDDTNEVGKVHIGALFLGRGKFNDV--EV-KEKDLFEWKWIKLEELEK  186 (203)
T ss_pred             hheeeeeecCCCcccceEEEEEEEEeeccccce--ee-eecceeeeeeeeHHHHHH
Confidence             333332111  122333332 33333322221  11 245667899999999876

>COG1194 MutY A/G-specific DNA glycosylase [DNA replication, recombination, and repair]

Probab=96.93  E-value=0.0054  Score=58.54  Aligned_cols=73  Identities=16%  Similarity=0.201  Sum_probs=57.6

Q ss_pred             CccCCCCCCcchHHHHHHHHhCCCCcccccccchhHHHhhhcCCcccccEEEEEEEeCCCCEEEEEEeeC----CCcEEc
Q 020742           60 SVENNPSLKSFTLKEFTSLMFNSCDVLRPYVAHIDDIFKDFTSYKVRVPVTGAIILDETYERCILVKGWK----GSSWSF  135 (322)
Q Consensus        60 ~~~~~p~l~~~~l~~f~~~l~~~~~~l~~~~~~~~~~~~~~~~y~~~v~v~g~Iv~~~~~~kvLLvrr~~----~~~w~f  135 (322)
                      |++.+|.|..|+++.+|....+|.+..+|....        +.-.+ ...++.++.+.++ +++|.++..    +|.|+|
T Consensus       197 Ct~~~P~C~~CPl~~~c~a~~~g~~~~~P~k~~--------k~~~~-~~~~~~~~~~~~~-~~~l~kr~~~gl~~gl~~f  266 (342)
T COG1194         197 CTAKKPKCSLCPLRDNCAAYRNGTPEKYPVKKP--------KKKLP-RRFAAFLILNRDG-EVLLEKRPEKGLLGGLWCF  266 (342)
T ss_pred             hcCCCCCCCcCcchHHHHHHHcCCcccCCCcCc--------ccccc-hheeeEEEEccCc-chhhhhCcccCceeccccc
Confidence            888999999999999999999999988876654        22233 5556677777764 889988866    799999


Q ss_pred             ccccCCC
Q 020742          136 PRGKKNK  142 (322)
Q Consensus       136 PgG~ie~  142 (322)
                      |....+.
T Consensus       267 P~~e~~~  273 (342)
T COG1194         267 PQFEDEA  273 (342)
T ss_pred             ccccccc
Confidence            9987654

>PRK13910 DNA glycosylase MutY; Provisional

Probab=96.85  E-value=0.012  Score=55.37  Aligned_cols=65  Identities=12%  Similarity=-0.006  Sum_probs=44.0

Q ss_pred             CccCCCCCCcchHHHHHHHHhCCCCcccccccchhHHHhhhcCCcccccEEEEEEEeCCCCEEEEEEeeC---CCcEEcc
Q 020742           60 SVENNPSLKSFTLKEFTSLMFNSCDVLRPYVAHIDDIFKDFTSYKVRVPVTGAIILDETYERCILVKGWK---GSSWSFP  136 (322)
Q Consensus        60 ~~~~~p~l~~~~l~~f~~~l~~~~~~l~~~~~~~~~~~~~~~~y~~~v~v~g~Iv~~~~~~kvLLvrr~~---~~~w~fP  136 (322)
                      |++ .|.|..|+++++|....++.....  ..         ++.+.......+++.++  +++||.||..   +|+|+||
T Consensus       151 C~~-~P~C~~CPl~~~C~~~~~~~~~~~--~~---------kk~~~~~~~~~~~~~~~--~~~ll~kr~~~l~~gl~~fP  216 (289)
T PRK13910        151 CSP-KPKCAICPLNPYCLGKNNPEKHTL--KK---------KQEIVQEERYLGVVIQN--NQIALEKIEQKLYLGMHHFP  216 (289)
T ss_pred             cCC-CCCCCCCcChhhhhhhhcCCcccc--CC---------CCCCCceEEEEEEEEEC--CEEEEEECCCchhcccccCC
Confidence            777 699999999999998877766421  11         22223333334444543  3899999854   8999999


Q ss_pred             cc
Q 020742          137 RG  138 (322)
Q Consensus       137 gG  138 (322)
                      ..
T Consensus       217 ~~  218 (289)
T PRK13910        217 NL  218 (289)
T ss_pred             CC
Confidence            63

>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]

Probab=96.68  E-value=0.008  Score=55.85  Aligned_cols=112  Identities=14%  Similarity=0.190  Sum_probs=73.9

Q ss_pred             cccEEEEEEEeCCCCEEEEEEeeC----CC---------------------------cEEcccccCCCCCCHHHHHHHHH
Q 020742          106 RVPVTGAIILDETYERCILVKGWK----GS---------------------------SWSFPRGKKNKDEEDHACAIREV  154 (322)
Q Consensus       106 ~v~v~g~Iv~~~~~~kvLLvrr~~----~~---------------------------~w~fPgG~ie~gEs~~eaA~REv  154 (322)
                      ....+.+|++|....+++|+|+.+    .|                           ..++-.|.|+..-+..+-|.||.
T Consensus       228 ~hdSvt~iL~n~srk~LVlvqqfRpaVy~G~~~~~~~g~~~~vDe~~~~e~~PaigvTlELcag~Vd~p~s~~e~a~~e~  307 (405)
T KOG4432|consen  228 CHDSVTCILVNMSRKELVLVQQFRPAVYVGKNRFLKEGIGKPVDEIDFSESDPAIGVTLELCAGRVDDPFSDPEKAARES  307 (405)
T ss_pred             CCCceEEEEEeccchheehhhhcCcceeecceeecccCCCCcccccccccCCccceeeeeeecccCCCCcccHHHHHHHH
Confidence            345678888887766888888766    11                           23444678887788999999999


Q ss_pred             HHHhCCcccc--eeeeeeeee-cccCeEEEEEEEEEeecCC--CC-CCCCCccceeeEEEEeccccccc
Q 020742          155 QEETGFDVSK--LLNKDEFIE-KIFGQQRVRLYIIAGVRDD--TA-FAPQTKKEISEIAWQRLDELQPA  217 (322)
Q Consensus       155 ~EETGl~v~~--l~~~~~~~~-~~~~~~~~~~y~~~~~~~~--~~-~~~~~~~Ei~~~~Wv~ldeL~~~  217 (322)
                      .||+|+++..  +..+..|+. .+.......+|++...+..  .. .-..+++|..++.-+++++++.+
T Consensus       308 veecGYdlp~~~~k~va~y~sGVG~SG~~QTmfy~eVTdA~rsgpGgg~~ee~E~IEvv~lsle~a~~~  376 (405)
T KOG4432|consen  308 VEECGYDLPEDSFKLVAKYISGVGQSGDTQTMFYVEVTDARRSGPGGGEKEEDEDIEVVRLSLEDAPSL  376 (405)
T ss_pred             HHHhCCCCCHHHHhhhheeecccCCcCCeeEEEEEEeehhhccCCCCCcccccceeeEEEechhhhhHH
Confidence            9999999864  444444443 2233344456665433321  00 11234568888889999999985

>PF13869 NUDIX_2: Nucleotide hydrolase; PDB: 3MDG_B 2J8Q_B 3Q2S_A 3P5T_D 3BAP_A 2CL3_A 3P6Y_A 3Q2T_B 3BHO_A 3N9U_A

Probab=96.63  E-value=0.0045  Score=54.28  Aligned_cols=70  Identities=14%  Similarity=0.284  Sum_probs=49.7

Q ss_pred             chhHHHhhhcCCcccccEEEEEEEeCCC-CEEEEEEeeCCCcEEcccccCCCCCCHHHHHHHHHHHHhCCcc
Q 020742           92 HIDDIFKDFTSYKVRVPVTGAIILDETY-ERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDV  162 (322)
Q Consensus        92 ~~~~~~~~~~~y~~~v~v~g~Iv~~~~~-~kvLLvrr~~~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v  162 (322)
                      .+..+..+|.+.-.+..|.|+++++..+ -+|||.|.. ...|.+|||++..||+..++..|.+.+-.|..-
T Consensus        29 rl~rl~~~y~~~GmRrsVe~Vllvh~h~~PHvLLLq~~-~~~fkLPGg~l~~gE~e~~gLkrkL~~~l~~~~   99 (188)
T PF13869_consen   29 RLQRLKENYEKEGMRRSVEGVLLVHEHGHPHVLLLQIG-NTFFKLPGGRLRPGEDEIEGLKRKLTEKLSPED   99 (188)
T ss_dssp             HHHHHHHHHHHHSSEEEEEEEEEEEETTEEEEEEEEET-TTEEE-SEEE--TT--HHHHHHHHHHHHHB-SS
T ss_pred             HHHHHHHHHHHhCCceEEEEEEEEecCCCcEEEEEecc-CccccCCccEeCCCCChhHHHHHHHHHHcCCCc
Confidence            3444555566666677788888887653 279999854 569999999999999999999999999998764

...

>KOG0142 consensus Isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=94.04  E-value=0.071  Score=47.08  Aligned_cols=106  Identities=18%  Similarity=0.295  Sum_probs=64.4

Q ss_pred             ccEEEEEEEeCCCCEEEEEEeeCCCcEEccc--------------ccCCC--CCCHHHHHHHHHHHHhCCcccce-----
Q 020742          107 VPVTGAIILDETYERCILVKGWKGSSWSFPR--------------GKKNK--DEEDHACAIREVQEETGFDVSKL-----  165 (322)
Q Consensus       107 v~v~g~Iv~~~~~~kvLLvrr~~~~~w~fPg--------------G~ie~--gEs~~eaA~REv~EETGl~v~~l-----  165 (322)
                      ..+..+++++..+ ++||.||.. ....||+              |..+.  +.....||+|-+.-|+||..+.+     
T Consensus        52 HRaFSVFlFns~~-~lLlQqRS~-~KitFP~~~TNtccSHPL~~~~el~~~d~lGVr~AAqRkL~~ELGIp~e~v~pee~  129 (225)
T KOG0142|consen   52 HRAFSVFLFNSKN-ELLLQQRSD-EKITFPGLWTNTCCSHPLYNPGELEENDALGVRRAAQRKLKAELGIPLEEVPPEEF  129 (225)
T ss_pred             hheeeEEEecCcc-hHHHhhhcc-ccccccchhhhhhhcCcCCChhhhccCchHHHHHHHHHHHHHhhCCCccccCHHHc
Confidence            4567899999885 889888764 3344443              11111  23468899999999999987643     


Q ss_pred             eeeeeeee--cc---cCeEEEEEEEEEeecCCCCCCCCCccceeeEEEEeccccccc
Q 020742          166 LNKDEFIE--KI---FGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  217 (322)
Q Consensus       166 ~~~~~~~~--~~---~~~~~~~~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~  217 (322)
                      ..+..+..  .+   .+.+.+.+ ++-... +....| +++|+.+++|++.++|..+
T Consensus       130 ~~ltrihYkA~sdg~wGEhEiDY-iL~~~~-~~~~nP-npnEv~e~ryvs~eelkel  183 (225)
T KOG0142|consen  130 NFLTRIHYKAPSDGIWGEHEIDY-ILFLVK-DVTLNP-NPNEVSEIRYVSREELKEL  183 (225)
T ss_pred             ccceeeeeecCCCCCcccceeeE-EEEEec-cCCCCC-ChhhhhHhheecHHHHHHH
Confidence            33333221  11   22232222 221122 233333 4699999999999999875

>KOG1689 consensus mRNA cleavage factor I subunit [RNA processing and modification]

Probab=92.59  E-value=0.38  Score=41.37  Aligned_cols=63  Identities=19%  Similarity=0.328  Sum_probs=48.9

Q ss_pred             HHhhhcCCcccccEEEEEEEeCCC-CEEEEEEeeCCCcEEcccccCCCCCCHHHHHHHHHHHHhC
Q 020742           96 IFKDFTSYKVRVPVTGAIILDETY-ERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETG  159 (322)
Q Consensus        96 ~~~~~~~y~~~v~v~g~Iv~~~~~-~kvLLvrr~~~~~w~fPgG~ie~gEs~~eaA~REv~EETG  159 (322)
                      +-.+|.+--.+..|-|++++.+.. -+|||.|-. ...+.+|||..++||+-.+...|-+.|-.|
T Consensus        59 mk~ey~k~gmRrsvegvlivheH~lPHvLLLQig-~tf~KLPGG~L~pGE~e~~Gl~r~l~~~Lg  122 (221)
T KOG1689|consen   59 MKIEYMKEGMRRSVEGVLIVHEHNLPHVLLLQIG-NTFFKLPGGRLRPGEDEADGLKRLLTESLG  122 (221)
T ss_pred             HHHHHHhhhhhheeeeeEEEeecCCCeEEEEeeC-CEEEecCCCccCCCcchhHHHHHHHHHHhc
Confidence            333444555566777888877652 388888643 578899999999999999999999999999

>KOG4548 consensus Mitochondrial ribosomal protein L17 [Translation, ribosomal structure and biogenesis]

Probab=91.89  E-value=0.64  Score=42.52  Aligned_cols=92  Identities=20%  Similarity=0.248  Sum_probs=58.0

Q ss_pred             EEEEEEeeC--CCcEEcccccC-CCCCCHHHHHHHHHHHHhCCccccee----eeeeeee--c-ccC-----eEEEEEEE
Q 020742          121 RCILVKGWK--GSSWSFPRGKK-NKDEEDHACAIREVQEETGFDVSKLL----NKDEFIE--K-IFG-----QQRVRLYI  185 (322)
Q Consensus       121 kvLLvrr~~--~~~w~fPgG~i-e~gEs~~eaA~REv~EETGl~v~~l~----~~~~~~~--~-~~~-----~~~~~~y~  185 (322)
                      =+|||++.-  .+.|.||-+.. +.++++..+|.|++.+-.|=....+.    .++.+..  + ...     ...+.+|.
T Consensus       140 LyLLV~~k~g~~s~w~fP~~~~s~~~~~lr~~ae~~Lk~~~ge~~~t~fvgnaP~g~~~~q~pr~~~~e~~~~sk~ff~k  219 (263)
T KOG4548|consen  140 LYLLVKRKFGKSSVWIFPNRQFSSSEKTLRGHAERDLKVLSGENKSTWFVGNAPFGHTPLQSPREMTTEEPVSSKVFFFK  219 (263)
T ss_pred             EEEEEeeccCccceeeCCCcccCCccchHHHHHHHHHHHHhcchhhhheeccCccccccccCcccccccccccceeEEee
Confidence            588998552  68999999999 89999999999999999996655421    1121110  0 000     12233444


Q ss_pred             EEeecCCCCCCCCCccceeeEEEEecccccc
Q 020742          186 IAGVRDDTAFAPQTKKEISEIAWQRLDELQP  216 (322)
Q Consensus       186 ~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~  216 (322)
                      +..+.++ .   +...-..++.|++-++|.+
T Consensus       220 ~~lv~~~-~---~kn~n~edfvWvTkdel~e  246 (263)
T KOG4548|consen  220 ASLVANS-N---QKNQNKEDFVWVTKDELGE  246 (263)
T ss_pred             eeecccc-c---hhcccccceEEechHHHhh
Confidence            4444442 1   1123334599999999987

>PF14443 DBC1: DBC1

Probab=84.22  E-value=2.8  Score=34.49  Aligned_cols=44  Identities=30%  Similarity=0.379  Sum_probs=31.5

Q ss_pred             EEEEEEeeC-----CCcEEcc--cccCCC-CCCHHHHHHHHHHHHhCCcccc
Q 020742          121 RCILVKGWK-----GSSWSFP--RGKKNK-DEEDHACAIREVQEETGFDVSK  164 (322)
Q Consensus       121 kvLLvrr~~-----~~~w~fP--gG~ie~-gEs~~eaA~REv~EETGl~v~~  164 (322)
                      |+|+.++.+     +|.|+--  ||-.+. ...+..+|+|=++|-||++.+.
T Consensus         9 kFlv~~k~ke~~aiGG~WspsLDG~DP~~dp~~LI~TAiR~~K~~tgiDLS~   60 (126)
T PF14443_consen    9 KFLVGKKDKEIMAIGGPWSPSLDGGDPSSDPSVLIRTAIRTCKALTGIDLSN   60 (126)
T ss_pred             eeEEeecCceEEecCCcCCcccCCCCCCCCcHHHHHHHHHHHHHHhccchhh
Confidence            445554433     6778654  555555 3567899999999999999986

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	322
2a6t_A	271	Crystal Structure Of S.Pombe Mrna Decapping Enzyme		5e-57
2qkm_B	266	The Crystal Structure Of Fission Yeast Mrna Decappi		6e-57
2jvb_A	146	Solution Structure Of Catalytic Domain Of Ydcp2 Len		3e-22
2qkl_B	95	The Crystal Structure Of Fission Yeast Mrna Decappi		2e-14
3f13_A	163	Crystal Structure Of Putative Nudix Hydrolase Famil		3e-04

>pdb|2A6T|A Chain A, Crystal Structure Of S.Pombe Mrna Decapping Enzyme Dcp2p Length = 271

Iteration: 1
 Score =  218 bits (554), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 115/238 (48%), Positives = 148/238 (62%), Gaps = 5/238 (2%)
Query: 9   SAPFKNGGLPPQELLDDLCSRFVLNVPQEDQQSFERILFLVEYAHWFYEDNSVENNPSLK 68
           S  F N      ++LDDL +RF+LN+P E+Q S ER+ F +E AHWFYED     N  L 
Sbjct: 5   SMSFTNATF--SQVLDDLSARFILNLPAEEQSSVERLCFQIEQAHWFYEDFIRAQNDQLP 62
Query: 69  SFTLKEFTSLMFNSCDVLRPYVAHIDDIFKDFTSYKVRVPVTGAIILDETYERCILVKGW 128
           S  L+ F++ +F  C +L  +    ++ F DF  YK R+PV GAI+LD + ++C+LVKGW
Sbjct: 63  SLGLRVFSAKLFAHCPLLWKWSKVHEEAFDDFLRYKTRIPVRGAIMLDMSMQQCVLVKGW 122
Query: 129 KGSS-WSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQQRVRLYIIA 187
           K SS W FP+GK +KDE D  CAIREV EETGFD S  +N +EFI+     Q VRLYII 
Sbjct: 123 KASSGWGFPKGKIDKDESDVDCAIREVYEETGFDCSSRINPNEFIDMTIRGQNVRLYIIP 182
Query: 188 GVRDDTAFAPQTKKEISEIAWQRLDELQPASDDVISHGVTGLKLYMVAPFLASLKKWI 245
           G+  DT F  +T+KEIS+I W  L +L     +         K YMV PFLA LKKWI
Sbjct: 183 GISLDTRFESRTRKEISKIEWHNLMDLPTFKKN--KPQTMKNKFYMVIPFLAPLKKWI 238

>pdb|2QKM|B Chain B, The Crystal Structure Of Fission Yeast Mrna Decapping Enzyme Dcp1-Dcp2 Complex Length = 266

Iteration: 1
 Score =  217 bits (553), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 112/226 (49%), Positives = 145/226 (64%), Gaps = 3/226 (1%)
Query: 21  ELLDDLCSRFVLNVPQEDQQSFERILFLVEYAHWFYEDNSVENNPSLKSFTLKEFTSLMF 80
           ++LDDL +RF+LN+P E+Q S ER+ F +E AHWFYED     N  L S  L+ F++ +F
Sbjct: 10  QVLDDLSARFILNLPAEEQSSVERLCFQIEQAHWFYEDFIRAQNDQLPSLGLRVFSAKLF 69
Query: 81  NSCDVLRPYVAHIDDIFKDFTSYKVRVPVTGAIILDETYERCILVKGWKGSS-WSFPRGK 139
             C +L  +    ++ F DF  YK R+PV GAI+LD + ++C+LVKGWK SS W FP+GK
Sbjct: 70  AHCPLLWKWSKVHEEAFDDFLRYKTRIPVRGAIMLDMSMQQCVLVKGWKASSGWGFPKGK 129
Query: 140 KNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQQRVRLYIIAGVRDDTAFAPQT 199
            +KDE D  CAIREV EETGFD S  +N +EFI+     Q VRLYII G+  DT F  +T
Sbjct: 130 IDKDESDVDCAIREVYEETGFDCSSRINPNEFIDMTIRGQNVRLYIIPGISLDTRFESRT 189
Query: 200 KKEISEIAWQRLDELQPASDDVISHGVTGLKLYMVAPFLASLKKWI 245
           +KEIS+I W  L +L     +         K YMV PFLA LKKWI
Sbjct: 190 RKEISKIEWHNLMDLPTFKKN--KPQTMKNKFYMVIPFLAPLKKWI 233

>pdb|2JVB|A Chain A, Solution Structure Of Catalytic Domain Of Ydcp2 Length = 146

Iteration: 1
 Score =  102 bits (254), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 49/146 (33%), Positives = 83/146 (56%), Gaps = 6/146 (4%)
Query: 104 KVRVPVTGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVS 163
           K  +PV GA I +E   + +LV+G +  SWSFPRGK +KDE D  C IREV+EE GFD++
Sbjct: 1   KKSIPVRGAAIFNENLSKILLVQGTESDSWSFPRGKISKDENDIDCCIREVKEEIGFDLT 60
Query: 164 KLLNKDEFIEKIFGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPASDDVIS 223
             ++ ++FIE+    +  ++++I+GV +   F PQ + EI +I W    ++        +
Sbjct: 61  DYIDDNQFIERNIQGKNYKIFLISGVSEVFNFKPQVRNEIDKIEWFDFKKISK------T 114
Query: 224 HGVTGLKLYMVAPFLASLKKWISAHK 249
              + +K Y++   +  L  W+   +
Sbjct: 115 MYKSNIKYYLINSMMRPLSMWLRHQR 140

>pdb|2QKL|B Chain B, The Crystal Structure Of Fission Yeast Mrna Decapping Enzyme Dcp1-Dcp2 Complex Length = 95

Iteration: 1
 Score = 76.3 bits (186), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 37/86 (43%), Positives = 53/86 (61%)
Query: 21  ELLDDLCSRFVLNVPQEDQQSFERILFLVEYAHWFYEDNSVENNPSLKSFTLKEFTSLMF 80
           ++LDDL +RF+LN+P E+Q S ER+ F +E AHWFYED     N  L S  L+ F++ +F
Sbjct: 10  QVLDDLSARFILNLPAEEQSSVERLCFQIEQAHWFYEDFIRAQNDQLPSLGLRVFSAKLF 69
Query: 81  NSCDVLRPYVAHIDDIFKDFTSYKVR 106
             C +L  +    ++ F DF  YK R
Sbjct: 70  AHCPLLWKWSKVHEEAFDDFLRYKTR 95

>pdb|3F13|A Chain A, Crystal Structure Of Putative Nudix Hydrolase Family Member From Chromobacterium Violaceum Length = 163

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 8/86 (9%)
Query: 123 ILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQQRVR 182
           +LV   +G  ++ P GK N+ E      IRE++EETG  ++ +L   + I   F   +V 
Sbjct: 29  VLVTASRGGRYNLPGGKANRGELRSQALIREIREETGLRINSMLYLFDHITP-FNAHKVY 87
Query: 183 LYIIAGVRDDTAFAPQTKKEISEIAW 208
           L I  G        P+ + EI  IA 
Sbjct: 88  LCIAQG-------QPKPQNEIERIAL 106

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	322
2a6t_A	271	SPAC19A8.12; alpha/beta/alpha, RNA binding protein	7e-91
2jvb_A	146	Protein PSU1, mRNA-decapping enzyme subunit 2; DCP	2e-52
2qkl_B	95	SPAC19A8.12 protein, SPBC3B9.21 protein; protein-p	1e-39
3h95_A	199	Nucleoside diphosphate-linked moiety X motif 6; NU	3e-17
1ktg_A	138	Diadenosine tetraphosphate hydrolase; nudix, AMP,	2e-14
1vcd_A	126	NDX1; nudix protein, diadenosine polyphosphate, AP	9e-14
3f13_A	163	Putative nudix hydrolase family member; structural	1e-12
2b0v_A	153	Nudix hydrolase; structural genomics, PSI, protein	2e-12
2pbt_A	134	AP4A hydrolase; nudix protein, diadenosine polypho	5e-12
1xsa_A	153	BIS(5'-nucleosyl)-tetraphosphatase; nudix enzyme,	6e-12
2pqv_A	154	MUTT/nudix family protein; structu genomics, PSI-2	1e-11
2azw_A	148	MUTT/nudix family protein; MUTT/nudix ,enterococcu	2e-11
3eds_A	153	MUTT/nudix family protein; MUT/nudix protein, prot	3e-11
1sjy_A	159	MUTT/nudix family protein; nudix fold, alpha-beta-	9e-11
3fk9_A	188	Mutator MUTT protein; structural genomics, hydrola	2e-10
3grn_A	153	MUTT related protein; structural genomics, hydrola	4e-10
1k2e_A	156	Nudix homolog; nudix/MUTT-like fold, mixed alpha/b	5e-10
4dyw_A	157	MUTT/nudix family protein; structural genomics, ni	6e-10
3shd_A	153	Phosphatase NUDJ; nudix fold, nudix motif, hydrola	1e-09
3gg6_A	156	Nudix motif 18, nucleoside diphosphate-linked moie	2e-09
3oga_A	165	Nucleoside triphosphatase NUDI; salmonella enteric	3e-09
2b06_A	155	MUTT/nudix family protein; structural genomics, P	5e-09
1rya_A	160	GDP-mannose mannosyl hydrolase; GDP-glucose, nudix	9e-09
3fjy_A	364	Probable MUTT1 protein; dimer, protein structure i	1e-08
2fvv_A	194	Diphosphoinositol polyphosphate phosphohydrolase 1	2e-08
1mut_A	129	MUTT, nucleoside triphosphate pyrophosphohydrolase	2e-08
3id9_A	171	MUTT/nudix family protein; hydrolase, protein stru	2e-08
3q1p_A	205	Phosphohydrolase (MUTT/nudix family protein); asym	2e-08
3fcm_A	197	Hydrolase, nudix family; protein structure initiat	2e-08
3son_A	149	Hypothetical nudix hydrolase; structural genomics,	2e-08
3cng_A	189	Nudix hydrolase; structural genomics, APC7497, PSI	1e-07
3exq_A	161	Nudix family hydrolase; protein structure initiati	2e-07
2rrk_A	140	ORF135, CTP pyrophosphohydrolase; NMR {Escherichia	2e-07
3gwy_A	140	Putative CTP pyrophosphohydrolase; structural geno	3e-07
3o8s_A	206	Nudix hydrolase, ADP-ribose pyrophosphatase; struc	3e-07
3ees_A	153	Probable pyrophosphohydrolase; nudix, RNA pyrophos	8e-07
3r03_A	144	Nudix hydrolase; structural genomics, PSI2, protei	8e-07
3hhj_A	158	Mutator MUTT protein; niaid, ssgcid, decode, UW, S	9e-07
3f6a_A	159	Hydrolase, nudix family; protein structure initiat	1e-06
2yyh_A	139	MUTT domain, 8-OXO-DGTPase domain; nudix family pr	1e-05
3i9x_A	187	MUTT/nudix family protein; structural genomics, hy	1e-05
3q93_A	176	7,8-dihydro-8-oxoguanine triphosphatase; structura	1e-05
2yvp_A	182	NDX2, MUTT/nudix family protein; nudix protein, AD	1e-05
1vhz_A	198	ADP compounds hydrolase NUDE; structural genomics;	1e-05
1v8y_A	170	ADP-ribose pyrophosphatase; nudix motif, loop-heli	3e-05
2dsc_A	212	ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP	4e-05
2fkb_A	180	Putative nudix hydrolase YFCD; putative protein, M	4e-05
2qjt_B	352	Nicotinamide-nucleotide adenylyltransferase; two i	4e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
1mk1_A	207	ADPR pyrophosphatase; nudix hydrolase, adprase, ad	5e-05
2w4e_A	145	MUTT/nudix family protein; ADP-ribose pyrophosphat	8e-05
1q27_A	171	Putative nudix hydrolase DR0079; radiation resista	1e-04
1g0s_A	209	Hypothetical 23.7 kDa protein in ICC-TOLC intergen	2e-04
1nqz_A	194	COA pyrophosphatase (MUTT/nudix family protein); D	2e-04
2o1c_A	150	DATP pyrophosphohydrolase; nudix NTP hydrolase NTP	2e-04

>2a6t_A SPAC19A8.12; alpha/beta/alpha, RNA binding protein,hydrolase; 2.50A {Schizosaccharomyces pombe} SCOP: a.242.1.1 d.113.1.7 PDB: 2qkm_B* Length = 271

 Score =  271 bits (694), Expect = 7e-91
 Identities = 115/245 (46%), Positives = 149/245 (60%), Gaps = 5/245 (2%)

Query: 8   SSAPFKNGGLPPQELLDDLCSRFVLNVPQEDQQSFERILFLVEYAHWFYEDNSVENNPSL 67
            S  F N      ++LDDL +RF+LN+P E+Q S ER+ F +E AHWFYED     N  L
Sbjct: 4   GSMSFTN--ATFSQVLDDLSARFILNLPAEEQSSVERLCFQIEQAHWFYEDFIRAQNDQL 61

Query: 68  KSFTLKEFTSLMFNSCDVLRPYVAHIDDIFKDFTSYKVRVPVTGAIILDETYERCILVKG 127
            S  L+ F++ +F  C +L  +    ++ F DF  YK R+PV GAI+LD + ++C+LVKG
Sbjct: 62  PSLGLRVFSAKLFAHCPLLWKWSKVHEEAFDDFLRYKTRIPVRGAIMLDMSMQQCVLVKG 121

Query: 128 WKGSS-WSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQQRVRLYII 186
           WK SS W FP+GK +KDE D  CAIREV EETGFD S  +N +EFI+     Q VRLYII
Sbjct: 122 WKASSGWGFPKGKIDKDESDVDCAIREVYEETGFDCSSRINPNEFIDMTIRGQNVRLYII 181

Query: 187 AGVRDDTAFAPQTKKEISEIAWQRLDELQPASDDVISHGVTGLKLYMVAPFLASLKKWIS 246
            G+  DT F  +T+KEIS+I W  L +L     +         K YMV PFLA LKKWI 
Sbjct: 182 PGISLDTRFESRTRKEISKIEWHNLMDLPTFKKN--KPQTMKNKFYMVIPFLAPLKKWIK 239

Query: 247 AHKPS 251
               +
Sbjct: 240 KRNIA 244

>2jvb_A Protein PSU1, mRNA-decapping enzyme subunit 2; DCP2, mRNA decay, cytoplasm, hydrolase, manganese, metal-binding, mRNA processing; NMR {Saccharomyces cerevisiae} Length = 146

 Score =  168 bits (427), Expect = 2e-52
 Identities = 49/146 (33%), Positives = 82/146 (56%), Gaps = 6/146 (4%)

Query: 104 KVRVPVTGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVS 163
           K  +PV GA I +E   + +LV+G +  SWSFPRGK +KDE D  C IREV+EE GFD++
Sbjct: 1   KKSIPVRGAAIFNENLSKILLVQGTESDSWSFPRGKISKDENDIDCCIREVKEEIGFDLT 60

Query: 164 KLLNKDEFIEKIFGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPASDDVIS 223
             ++ ++FIE+    +  ++++I+GV +   F PQ + EI +I W    ++         
Sbjct: 61  DYIDDNQFIERNIQGKNYKIFLISGVSEVFNFKPQVRNEIDKIEWFDFKKISKTMYK--- 117

Query: 224 HGVTGLKLYMVAPFLASLKKWISAHK 249
              + +K Y++   +  L  W+   +
Sbjct: 118 ---SNIKYYLINSMMRPLSMWLRHQR 140

>2qkl_B SPAC19A8.12 protein, SPBC3B9.21 protein; protein-protein complex, hydrolase; 2.33A {Schizosaccharomyces pombe} SCOP: a.242.1.1 Length = 95

 Score =  133 bits (337), Expect = 1e-39
 Identities = 37/92 (40%), Positives = 53/92 (57%)

Query: 15  GGLPPQELLDDLCSRFVLNVPQEDQQSFERILFLVEYAHWFYEDNSVENNPSLKSFTLKE 74
                 ++LDDL +RF+LN+P E+Q S ER+ F +E AHWFYED     N  L S  L+ 
Sbjct: 4   TNATFSQVLDDLSARFILNLPAEEQSSVERLCFQIEQAHWFYEDFIRAQNDQLPSLGLRV 63

Query: 75  FTSLMFNSCDVLRPYVAHIDDIFKDFTSYKVR 106
           F++ +F  C +L  +    ++ F DF  YK R
Sbjct: 64  FSAKLFAHCPLLWKWSKVHEEAFDDFLRYKTR 95

>3h95_A Nucleoside diphosphate-linked moiety X motif 6; NUDT6, nudix, hydrolase, GFG, GFG-1, FGF2AS, structural GENO structural genomics consortium, SGC; HET: FLC; 1.70A {Homo sapiens} Length = 199

 Score = 77.7 bits (191), Expect = 3e-17
 Identities = 27/132 (20%), Positives = 54/132 (40%), Gaps = 7/132 (5%)

Query: 87  RPYVAHIDDIFKDFTSYKVRVPVTGAIILDETYERCILVKGWKGSS--WSFPRGKKNKDE 144
                  ++++    S++V V      + DE+  + ++V+        W FP G    +E
Sbjct: 9   SGVDLGTENLYFQSMSHQVGV---AGAVFDESTRKILVVQDRNKLKNMWKFPGGLSEPEE 65

Query: 145 EDHACAIREVQEETGFDV--SKLLNKDEFIEKIFGQQRVRLYIIAGVRDDTAFAPQTKKE 202
           +    A+REV EETG       +L+  +         +  +YII  ++  +      ++E
Sbjct: 66  DIGDTAVREVFEETGIKSEFRSVLSIRQQHTNPGAFGKSDMYIICRLKPYSFTINFCQEE 125

Query: 203 ISEIAWQRLDEL 214
                W  L++L
Sbjct: 126 CLRCEWMDLNDL 137

>1ktg_A Diadenosine tetraphosphate hydrolase; nudix, AMP, magnesium cluster; HET: AMP; 1.80A {Caenorhabditis elegans} SCOP: d.113.1.1 PDB: 1kt9_A* Length = 138

 Score = 68.4 bits (168), Expect = 2e-14
 Identities = 22/112 (19%), Positives = 43/112 (38%), Gaps = 11/112 (9%)

Query: 111 GAIIL---DETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLN 167
           G +I        E  +L   +    W+ P+G  +  E++   AIRE +EE      +L  
Sbjct: 7   GLVIYRKLAGKIEFLLLQASYPPHHWTPPKGHVDPGEDEWQAAIRETKEEANITKEQLTI 66

Query: 168 KDEFIEKIF-----GQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDEL 214
            ++  E +F       + V+ + +A + +          E     W  L++ 
Sbjct: 67  HEDCHETLFYEAKGKPKSVKYW-LAKLNNPDDVQLSH--EHQNWKWCELEDA 115

>1vcd_A NDX1; nudix protein, diadenosine polyphosphate, AP6A, thermus THER HB8, hydrolase, riken structural genomics/proteomics initia RSGI; 1.70A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1vc8_A 1vc9_A* Length = 126

 Score = 66.2 bits (162), Expect = 9e-14
 Identities = 24/106 (22%), Positives = 45/106 (42%), Gaps = 9/106 (8%)

Query: 111 GAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKL--LNK 168
           G ++ +   E  +L+   +   W FP+G     E     A+REV EETG     L  L  
Sbjct: 6   GGVVFNAKRE--VLLLRDRMGFWVFPKGHPEPGESLEEAAVREVWEETGVRAEVLLPLYP 63

Query: 169 DEFIEKIFGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDEL 214
             ++     ++ V  +++ G       AP+ ++ ++   W   +E 
Sbjct: 64  TRYVNPKGVEREVHWFLMRGE-----GAPRLEEGMTGAGWFSPEEA 104

>3f13_A Putative nudix hydrolase family member; structural genomics, PSI-2, protein structure initiative; 1.70A {Chromobacterium violaceum} Length = 163

 Score = 64.1 bits (156), Expect = 1e-12
 Identities = 21/108 (19%), Positives = 40/108 (37%), Gaps = 11/108 (10%)

Query: 107 VPVTGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLL 166
                AII     +  ++    +G  ++ P GK N+ E      IRE++EETG  ++ + 
Sbjct: 16  ARRATAIIEMP--DGVLVTA-SRGGRYNLPGGKANRGELRSQALIREIREETGLRINSM- 71

Query: 167 NKDEFIEKIFGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDEL 214
               ++             +   +      P+ + EI  IA     + 
Sbjct: 72  ---LYLFDHITPFNAHKVYLCIAQGQ----PKPQNEIERIALVSSPDT 112

>2b0v_A Nudix hydrolase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.55A {Nitrosomonas europaea} SCOP: d.113.1.1 Length = 153

 Score = 63.3 bits (154), Expect = 2e-12
 Identities = 27/130 (20%), Positives = 41/130 (31%), Gaps = 9/130 (6%)

Query: 102 SYKVRVPVTGAIILDETYERCILV---KGWKGSSWSFPRGKKNKDEEDHACAIREVQEET 158
           ++K  V V  A+I  +  ++ +LV           + P G     E       REV EET
Sbjct: 4   TWKPNVTV-AAVIEQD--DKYLLVEEIPRGTAIKLNQPAGHLEPGESIIQACSREVLEET 60

Query: 159 GFDVS--KLLNKDEFIEKIFGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQP 216
           G       L     +     G   +R      V             I   AW  +DE++ 
Sbjct: 61  GHSFLPEVLTGIYHWTCASNGTTYLRFTFSGQVVSFDPDRKL-DTGIVRAAWFSIDEIRA 119

Query: 217 ASDDVISHGV 226
                 +  V
Sbjct: 120 KQAMHRTPLV 129

>1xsa_A BIS(5'-nucleosyl)-tetraphosphatase; nudix enzyme, human AP4A hydrolase, alpha-beta; NMR {Homo sapiens} SCOP: d.113.1.1 PDB: 1xsb_A 1xsc_A* Length = 153

 Score = 61.7 bits (150), Expect = 6e-12
 Identities = 21/112 (18%), Positives = 37/112 (33%), Gaps = 7/112 (6%)

Query: 108 PVTGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLN 167
                 + +   E  +L        W+ P+G     E+D   A+R  QEE G +  +L  
Sbjct: 18  RCLIPKVDNNAIEFLLLQASDGIHHWTPPKGHVEPGEDDLETALRATQEEAGIEAGQLTI 77

Query: 168 KDEFIEKIF-----GQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDEL 214
            + F  ++        + V  ++      D         E     W  L+E 
Sbjct: 78  IEGFKRELNYVARNKPKTVIYWLAEVKDYDVEIRLS--HEHQAYRWLGLEEA 127

>2pqv_A MUTT/nudix family protein; structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 1.63A {Streptococcus pneumoniae} Length = 154

 Score = 60.9 bits (148), Expect = 1e-11
 Identities = 25/124 (20%), Positives = 44/124 (35%), Gaps = 9/124 (7%)

Query: 95  DIFKDFTSYKVRVPVTGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREV 154
           D      +    V    A+I+       +LV   KG  +    G    +E      +REV
Sbjct: 8   DFRTKVDNTVFGVRA-TALIVQN---HKLLVTKDKGK-YYTIGGAIQVNESTEDAVVREV 62

Query: 155 QEETGFDVS--KLLNKDEFIEKIFGQ--QRVRLYIIAGVRDDTAFAPQTKKEISEIAWQR 210
           +EE G      +L    E   ++ G     +  + +  + +D     Q  ++     W  
Sbjct: 63  KEELGVKAQAGQLAFVVENRFEVDGVSYHNIEFHYLVDLLEDAPLTMQEDEKRQPCEWID 122

Query: 211 LDEL 214
           LD+L
Sbjct: 123 LDKL 126

>2azw_A MUTT/nudix family protein; MUTT/nudix ,enterococcus faecalis, structural genomics, PSI, structure initiative; HET: 1PE; 1.90A {Enterococcus faecalis} SCOP: d.113.1.1 Length = 148

 Score = 60.2 bits (146), Expect = 2e-11
 Identities = 21/124 (16%), Positives = 40/124 (32%), Gaps = 13/124 (10%)

Query: 98  KDFTSYKVRVPVTGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEE 157
           ++  +Y+ R      I+        +LV+   G+ +  P G+    E       REV EE
Sbjct: 10  EETLTYQTRYAA-YIIVSKPENNTMVLVQAPNGA-YFLPGGEIEGTETKEEAIHREVLEE 67

Query: 158 TGFDV--SKLLNKDEFI-----EKIFGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQR 210
            G  V     L + +        +         Y+    R       +  +  + + W  
Sbjct: 68  LGISVEIGCYLGEADEYFYSNHRQTAYYNPGYFYVANTWRQ----LSEPLERTNTLHWVA 123

Query: 211 LDEL 214
            +E 
Sbjct: 124 PEEA 127

>1sjy_A MUTT/nudix family protein; nudix fold, alpha-beta-alpha sandwich, structural genomics, BSGC structure funded by NIH; 1.39A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1soi_A 1su2_A* 1sz3_A* Length = 159

 Score = 58.7 bits (142), Expect = 9e-11
 Identities = 27/120 (22%), Positives = 45/120 (37%), Gaps = 9/120 (7%)

Query: 103 YKVRVPVTGAIILDETYERCILVK-------GWKGSSWSFPRGKKNKDEEDHACAIREVQ 155
             V +   G ++L+E     +LV+         K   W  P G     E     A+RE  
Sbjct: 9   VPVELRAAGVVLLNER-GDILLVQEKGIPGHPEKAGLWHIPSGAVEDGENPQDAAVREAC 67

Query: 156 EETGFDVSKLLNKDEFIEKI-FGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDEL 214
           EETG  V  +     ++ +   G   +R   +A        AP    EI+E ++   ++ 
Sbjct: 68  EETGLRVRPVKFLGAYLGRFPDGVLILRHVWLAEPEPGQTLAPAFTDEIAEASFVSREDF 127

>3fk9_A Mutator MUTT protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.50A {Bacillus halodurans} Length = 188

 Score = 58.2 bits (141), Expect = 2e-10
 Identities = 24/114 (21%), Positives = 42/114 (36%), Gaps = 12/114 (10%)

Query: 107 VPVTGAIILDETYERCILVK----GWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDV 162
             VT  I++D   ++ +L++    GW    W  P GK    E       RE  EETG  V
Sbjct: 4   QRVTNCIVVDH--DQVLLLQKPRRGW----WVAPGGKMEAGESILETVKREYWEETGITV 57

Query: 163 S--KLLNKDEFIEKIFGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDEL 214
              +L      +    G+      +      +       +    ++ W++ DE+
Sbjct: 58  KNPELKGIFSMVIFDEGKIVSEWMLFTFKATEHEGEMLKQSPEGKLEWKKKDEV 111

>3grn_A MUTT related protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 1.70A {Methanosarcina mazei} Length = 153

 Score = 56.6 bits (137), Expect = 4e-10
 Identities = 26/119 (21%), Positives = 43/119 (36%), Gaps = 15/119 (12%)

Query: 104 KVRVPVTGAIILDETYERCILV------KGWKGSSWSFPRGKKNKDEEDHACAIREVQEE 157
           K  +    A+I +E  +   L+             W  P GK N DE       REV EE
Sbjct: 5   KPYIISVYALIRNE--KGEFLLLRRSENSRTNAGKWDLPGGKVNPDESLKEGVAREVWEE 62

Query: 158 TGFDV--SKLLNKDEFIEKIFGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDEL 214
           TG  +    +  +  F      +++V   +  G         +   E  E +W  L+++
Sbjct: 63  TGITMVPGDIAGQVNF---ELTEKKVIAIVFDGGYVVA--DVKLSYEHIEYSWVSLEKI 116

>1k2e_A Nudix homolog; nudix/MUTT-like fold, mixed alpha/beta, dimer, putative NUDI hydrolase, structural genomics, unknown function; 1.80A {Pyrobaculum aerophilum} SCOP: d.113.1.1 PDB: 1jrk_A 1k26_A Length = 156

 Score = 56.4 bits (136), Expect = 5e-10
 Identities = 29/158 (18%), Positives = 61/158 (38%), Gaps = 18/158 (11%)

Query: 107 VPVTGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLL 166
           + VT  ++++    + +LVK  +   + +P G    +E       RE +EETG  V  + 
Sbjct: 1   MIVTSGVLVEN--GKVLLVKHKRLGVYIYPGGHVEHNETPIEAVKREFEEETGIVVEPIG 58

Query: 167 NKDEFIEKIFGQQRVRLYIIAGVRDDTA----------FAPQTKKEISEIAWQRLDELQ- 215
                I++   ++ + L I+  V                  +   ++    W  + E+  
Sbjct: 59  FTYGIIDENAVERPMPLVILEEVVKYPEETHIHFDLIYLVKRVGGDLKNGEWIDVREIDR 118

Query: 216 ----PASDDVISHGVTGL-KLYMVAPFLASLKKWISAH 248
               P    V+S  ++ L +L  ++   A+L+     H
Sbjct: 119 IETFPNVRKVVSLALSTLYRLGKISKLAAALEHHHHHH 156

>4dyw_A MUTT/nudix family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.50A {Burkholderia pseudomallei} Length = 157

 Score = 56.2 bits (136), Expect = 6e-10
 Identities = 28/128 (21%), Positives = 46/128 (35%), Gaps = 9/128 (7%)

Query: 100 FTSYKVRVPVTGAIILDETYERCILVK---GWKGSSWSFPRGKKNKDEEDHACAIREVQE 156
               +      GA I+ +   R +L+K     +   W  P GK +  E       RE++E
Sbjct: 22  MQHTEQPRVGCGAAIVRD--GRILLIKRKRAPEAGCWGLPGGKVDWLEPVERAVCREIEE 79

Query: 157 ETGFDV--SKLLNKDEFIEKIFGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDEL 214
           E G  +  + LL   + I+   G+  V    +A                  + W  LD+L
Sbjct: 80  ELGIALERATLLCVVDHIDAANGEHWVAPVYLAHAFSGEP-RVVEPDRHEALGWFALDDL 138

Query: 215 -QPASDDV 221
            QP +   
Sbjct: 139 PQPLTHAT 146

>3shd_A Phosphatase NUDJ; nudix fold, nudix motif, hydrolase, (D)NDP/(D)NTP binding, dephosphorylation; 2.50A {Escherichia coli} PDB: 3dku_A Length = 153

 Score = 55.5 bits (134), Expect = 1e-09
 Identities = 25/128 (19%), Positives = 46/128 (35%), Gaps = 10/128 (7%)

Query: 103 YKVRVPVTGAIILDETYERCILVK--GWKGSSWSFPRGKKNKDEEDHACAIREVQEETGF 160
           +K  V V   ++  E   + ++V+      + W+ P G    DE     A RE+ EETG 
Sbjct: 2   FKPHVTV-ACVVHAE--GKFLVVEETINGKALWNQPAGHLEADETLVEAAARELWEETGI 58

Query: 161 DVS--KLLNKDEFIEKIFGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPAS 218
                  +   ++I        +R      +       P    +I    W   +E+   +
Sbjct: 59  SAQPQHFIRMHQWIAP-DKTPFLRFLFAIELEQICPTQPH-DSDIDCCRWVSAEEI-LQA 115

Query: 219 DDVISHGV 226
            ++ S  V
Sbjct: 116 SNLRSPLV 123

>3gg6_A Nudix motif 18, nucleoside diphosphate-linked moiety X motif 18; NUDT18, NXR1, nucleotide hydrolase, hydrolase, structural genomics; 2.10A {Homo sapiens} Length = 156

 Score = 54.8 bits (132), Expect = 2e-09
 Identities = 24/113 (21%), Positives = 40/113 (35%), Gaps = 10/113 (8%)

Query: 107 VPVTGAIILDETYERCILVKGWKGS---SWSFPRGKKNKDEEDHACAIREVQEETGFDV- 162
             V  A+ L E  +  +L++  K     SW  P G+    E       REV+EE G    
Sbjct: 20  CYVVLAVFLSEQ-DEVLLIQEAKRECRGSWYLPAGRMEPGETIVEALQREVKEEAGLHCE 78

Query: 163 -SKLLNKDEFIEKIFGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDEL 214
              LL+    +E+        +++          + +   E  + AW     L
Sbjct: 79  PETLLS----VEERGPSWVRFVFLARPTGGILKTSKEADAESLQAAWYPRTSL 127

>3oga_A Nucleoside triphosphatase NUDI; salmonella enterica subsp. enterica serovar typhimurium STR. unknown function; HET: PO4; 1.75A {Salmonella enterica subsp} PDB: 3n77_A Length = 165

 Score = 54.5 bits (131), Expect = 3e-09
 Identities = 20/122 (16%), Positives = 37/122 (30%), Gaps = 15/122 (12%)

Query: 106 RVPVTGAIILDETYERCILV-----KGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGF 160
           +  +   +I ++     +L      +G     W+   G     E       RE++EE G 
Sbjct: 27  QRTIVCPLIQND--GCYLLCKMADNRGVFPGQWALSGGGVEPGERIEEALRREIREELGE 84

Query: 161 DVSK-------LLNKDEFIEKIFGQQRVRLYIIAGVRDDTAFA-PQTKKEISEIAWQRLD 212
            +           +         G+Q     I       +A        E  + AW + +
Sbjct: 85  QLILSDITPWTFRDDIRIKTYADGRQEEIYMIYLIFDCVSANRDICINDEFQDYAWVKPE 144

Query: 213 EL 214
           EL
Sbjct: 145 EL 146

>2b06_A MUTT/nudix family protein; structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 1.40A {Streptococcus pneumoniae} SCOP: d.113.1.1 Length = 155

 Score = 53.6 bits (129), Expect = 5e-09
 Identities = 25/112 (22%), Positives = 44/112 (39%), Gaps = 11/112 (9%)

Query: 109 VTGAIILDETYERCILVK----GWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDV-- 162
               +I D   +R ++        + S ++FP G    DE      IRE+ EETG  +  
Sbjct: 10  TNICLIEDLETQRVVMQYRAPENNRWSGYAFPGGHVENDEAFAESVIREIYEETGLTIQN 69

Query: 163 SKLLNKDEFIEKIFGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDEL 214
            +L+    +     G+  V  Y             Q+  E  E++W + D++
Sbjct: 70  PQLVGIKNWPLDTGGRYIVICYKATEFSGT----LQS-SEEGEVSWVQKDQI 116

>1rya_A GDP-mannose mannosyl hydrolase; GDP-glucose, nudix, nudix Mg-complex; HET: GDP; 1.30A {Escherichia coli} SCOP: d.113.1.5 PDB: 2gt2_A 2gt4_A* 2i8t_A* 2i8u_A* Length = 160

 Score = 53.0 bits (127), Expect = 9e-09
 Identities = 27/141 (19%), Positives = 44/141 (31%), Gaps = 18/141 (12%)

Query: 94  DDIFKDFTSYKVRVPVTGAIILDETYERCILV-----KGWKGSSWSFPRGKKNKDEEDHA 148
            + F         V +   I+ +       L+     +  +G  W  P G+  KDE   A
Sbjct: 6   QEDFATVVRSTPLVSL-DFIVENS--RGEFLLGKRTNRPAQGY-WFVPGGRVQKDETLEA 61

Query: 149 CAIREVQEETGFDVSKLLNK-----DEFIEKIFGQQRVRL-YIIAGV--RDDTAFAPQTK 200
              R    E G  +     +       F +  F        Y++ G   R          
Sbjct: 62  AFERLTMAELGLRLPITAGQFYGVWQHFYDDNFSGTDFTTHYVVLGFRFRVSEEELLLPD 121

Query: 201 KEISEIAWQRLDELQPASDDV 221
           ++  +  W   D L  ASD+V
Sbjct: 122 EQHDDYRWLTSDAL-LASDNV 141

>3fjy_A Probable MUTT1 protein; dimer, protein structure initiative II), NYSGXRC, 11181H, structural genomics; 2.15A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID} Length = 364

 Score = 54.5 bits (130), Expect = 1e-08
 Identities = 14/30 (46%), Positives = 20/30 (66%)

Query: 133 WSFPRGKKNKDEEDHACAIREVQEETGFDV 162
           WS+P+GK  ++E     A+RE+ EETG  V
Sbjct: 51  WSWPKGKLEQNETHRHAAVREIGEETGSPV 80

>2fvv_A Diphosphoinositol polyphosphate phosphohydrolase 1; nudix, inositol polyphosphate metabolism, structural genomics, structural genomics consortium; HET: IHP; 1.25A {Homo sapiens} SCOP: d.113.1.1 PDB: 2q9p_A* 2duk_A 3mcf_A* Length = 194

 Score = 52.7 bits (126), Expect = 2e-08
 Identities = 24/118 (20%), Positives = 39/118 (33%), Gaps = 7/118 (5%)

Query: 99  DFTSYKVRVPVTGAIILDETYERCIL--VKGWKGSSWSFPRGKKNKDEEDHACAIREVQE 156
           D   YK R      +      E  +L          W  P G    +EE    A+REV E
Sbjct: 35  DGDGYKKRA---ACLCFRSESEEEVLLVSSSRHPDRWIVPGGGMEPEEEPSVAAVREVCE 91

Query: 157 ETGFDVSKLLNKDEFIEKIFGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDEL 214
           E G     L       E    + R  +Y++  V +       +     +  W ++++ 
Sbjct: 92  EAGVKG-TLGRLVGIFENQERKHRTYVYVLI-VTEVLEDWEDSVNIGRKREWFKIEDA 147

>1mut_A MUTT, nucleoside triphosphate pyrophosphohydrolase; DNA repair; NMR {Escherichia coli} SCOP: d.113.1.1 PDB: 1ppx_A* 1pun_A* 1puq_A* 1pus_A* 1tum_A* 3a6s_A* 3a6t_A* 3a6u_A* 3a6v_A* Length = 129

 Score = 51.4 bits (124), Expect = 2e-08
 Identities = 25/116 (21%), Positives = 41/116 (35%), Gaps = 15/116 (12%)

Query: 106 RVPVTGAIILDETYERCILV-----KGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGF 160
           ++ +   II +E     I +          +   FP GK    E      +RE+QEE G 
Sbjct: 3   KLQIAVGIIRNE--NNEIFITRRAADAHMANKLEFPGGKIEMGETPEQAVVRELQEEVGI 60

Query: 161 DVSKLLNKDEFIEKIFGQQRVRL--YIIAGVRDDTAFAPQTKKEISEIAWQRLDEL 214
                 +  E +E  F  + + L  +++     +    P   KE     W  L  L
Sbjct: 61  TPQH-FSLFEKLEYEFPDRHITLWFWLVERWEGE----PW-GKEGQPGEWMSLVGL 110

>3id9_A MUTT/nudix family protein; hydrolase, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.55A {Bacillus thuringiensis str} Length = 171

 Score = 52.0 bits (125), Expect = 2e-08
 Identities = 31/158 (19%), Positives = 61/158 (38%), Gaps = 14/158 (8%)

Query: 86  LRPYVAHIDDIFKDFTSYKVRVPVTGAIILDETYERCILVK-GWKGSSWSFPRGKKNKDE 144
           L  ++   +   + +    ++V V   I++++  E+ +LVK       WS P G+    E
Sbjct: 3   LEGFICKFNRKRRLYIENIMQVRV-TGILIED--EKVLLVKQKVANRDWSLPGGRVENGE 59

Query: 145 EDHACAIREVQEETGFDVSKLLNKDEFIEKIFG-QQRVRLYIIAGVRDDTAFAPQT---K 200
                 IRE++EETG +V K+       +K       + +  +    +     P      
Sbjct: 60  TLEEAMIREMREETGLEV-KIKKLLYVCDKPDASPSLLHITFLLERIEGEITLPSNEFDH 118

Query: 201 KEISEIAWQRLDEL-----QPASDDVISHGVTGLKLYM 233
             I ++    ++EL          ++IS G+     Y 
Sbjct: 119 NPIHDVQMVPINELSYYGFSETFINLISGGLANAGSYQ 156

>3q1p_A Phosphohydrolase (MUTT/nudix family protein); asymmetric dimer, RNA exonuclease, CDP-CHO pyrophosphatase; 1.80A {Bacillus cereus} PDB: 3q4i_A Length = 205

 Score = 52.8 bits (127), Expect = 2e-08
 Identities = 28/128 (21%), Positives = 52/128 (40%), Gaps = 10/128 (7%)

Query: 92  HIDDIFKDFTSYKVRVPVTGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAI 151
            ++ +F   T Y+       A++     E+ + VK      W+ P G  +        A 
Sbjct: 53  VVEKLFASETGYQTPKVDIRAVVFQN--EKLLFVKEKSDGKWALPGGWADVGYTPTEVAA 110

Query: 152 REVQEETGFDV--SKLL---NKDEFIEKIFGQQRVRLYIIAGVRDDTAFAPQTKKEISEI 206
           +EV EETG++V   KLL   +K++           +++I   +        +T  E  E+
Sbjct: 111 KEVFEETGYEVDHFKLLAIFDKEKHQPSPSATHVYKIFIGCEIIGGE---KKTSIETEEV 167

Query: 207 AWQRLDEL 214
            +   +EL
Sbjct: 168 EFFGENEL 175

>3fcm_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, 11180J, structural genomics; 2.20A {Clostridium perfringens atcc 13124} Length = 197

 Score = 52.3 bits (125), Expect = 2e-08
 Identities = 21/150 (14%), Positives = 55/150 (36%), Gaps = 16/150 (10%)

Query: 84  DVLRPYVAHIDDIFKDFTSYKVRVPVTGAIILDETYERCILVKGWKGSSWSFPRGKKNKD 143
           ++    +    DI        +    + A  +++   + +++     +SW++  G  + +
Sbjct: 24  ELFLRCLNDFHDILT--RDNTIAHLTSSAFAVNKERNKFLMIHHNIYNSWAWTGGHSDNE 81

Query: 144 EEDHACAIREVQEETGF-------------DVSKLLNKDEFIEKIFGQQRVRLYIIAGVR 190
           ++    AI+E++EETG              DV  +    +  + +     + L  +    
Sbjct: 82  KDQLKVAIKELKEETGVKNPTPLLDKAFALDVLTVNGHIKRGKYVSSHLHLNLTYLIECS 141

Query: 191 DDTAFAPQTKKEISEIAWQRLDELQPASDD 220
           +D     +   E S + W   +E+     +
Sbjct: 142 EDETLMLKE-DENSGVMWIPFNEISKYCSE 170

>3son_A Hypothetical nudix hydrolase; structural genomics, joint center for structural GENO JCSG, protein structure initiative, PSI-biology; HET: MSE; 1.71A {Listeria monocytogenes} Length = 149

 Score = 51.5 bits (123), Expect = 2e-08
 Identities = 22/118 (18%), Positives = 36/118 (30%), Gaps = 8/118 (6%)

Query: 104 KVRVPVTGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVS 163
             +V V   I  +  Y+   ++       W F  G    +E     A RE  EE   DV 
Sbjct: 5   PFQVLVIPFIKTEANYQ-FGVLHRTDADVWQFVAGGGEDEEAISETAKRESIEELNLDVD 63

Query: 164 KLL----NKDEFIEKIFGQQRVRL---YIIAGVRDDTAFAPQTKKEISEIAWQRLDEL 214
             +    +        F   +  +   Y  A      ++      E SE+ W   +  
Sbjct: 64  VKMYSLDSHASIPNFHFSFNKPYVVPEYCFAIDLTSCSYQVTLSLEHSELRWVSYESA 121

>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718} Length = 189

 Score = 50.1 bits (120), Expect = 1e-07
 Identities = 23/115 (20%), Positives = 38/115 (33%), Gaps = 20/115 (17%)

Query: 108 PVTGAIILDETYERCILVK---GWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSK 164
            + G I   E   + +L K         W+ P G    +E     A RE  EE    V  
Sbjct: 41  VIVGCIPEWE--NKVLLCKRAIAPYRGKWTLPAGFMENNETLVQGAARETLEEANARVE- 97

Query: 165 LLNKDEFIEKIFGQQRVR----LYIIAGVR-DDTAFAPQTKKEISEIAWQRLDEL 214
                  I +++    +     +Y++   +  D  F P    E  E+      E+
Sbjct: 98  -------IRELYAVYSLPHISQVYMLFRAKLLDLDFFPGI--ESLEVRLFGEQEI 143

>3exq_A Nudix family hydrolase; protein structure initiative II(PSI II), NYSGXRC, 11180K, structural genomics; 2.00A {Lactobacillus brevis atcc 367} Length = 161

 Score = 48.9 bits (117), Expect = 2e-07
 Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 5/61 (8%)

Query: 109 VTGAIILDETYERCILVK----GWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSK 164
           VT  ++ D   +R ++       WK    SFP G     E     AIREV EETG  +S 
Sbjct: 12  VTMVMVTDPETQRVLVEDKVNVPWKAG-HSFPGGHVEVGEPCATAAIREVFEETGLRLSG 70

Query: 165 L 165
           +
Sbjct: 71  V 71

>2rrk_A ORF135, CTP pyrophosphohydrolase; NMR {Escherichia coli} Length = 140

 Score = 48.4 bits (116), Expect = 2e-07
 Identities = 23/115 (20%), Positives = 40/115 (34%), Gaps = 14/115 (12%)

Query: 106 RVPVTGAIILDETYERCILV-----KGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGF 160
            + V  AII  +     IL+     +  +   W F  GK   DE      +RE++EE G 
Sbjct: 8   MIEVVAAIIERD---GKILLAQRPAQSDQAGLWEFAGGKVEPDESQRQALVRELREELGI 64

Query: 161 DVSKLLNKDEFIEKIFGQQRVRLYI-IAGVRDDTAFAPQTKKEISEIAWQRLDEL 214
           +   +       ++    + + L+         T  A     E   + W   +E 
Sbjct: 65  EA-TVGEYVASHQREVSGRIIHLHAWHVPDFHGTLQA----HEHQALVWCSPEEA 114

>3gwy_A Putative CTP pyrophosphohydrolase; structural genomics, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.00A {Bacteroides fragilis} Length = 140

 Score = 48.0 bits (115), Expect = 3e-07
 Identities = 19/116 (16%), Positives = 39/116 (33%), Gaps = 14/116 (12%)

Query: 106 RVPVTGAIILDETYERCILVK------GWKGSSWSFPRGKKNKDEEDHACAIREVQEETG 159
            + V  A+I     E+ + V+       +    + FP GK  + E       RE+ EE  
Sbjct: 5   SIEVVAAVIRLG--EKYLCVQRGQTKFSYTSFRYEFPGGKVEEGESLQEALQREIMEEMD 62

Query: 160 FDVSKLLNKDEFIEKIFGQQRVRLYI-IAGVRDDTAFAPQTKKEISEIAWQRLDEL 214
           + + ++  K   +   +    + ++  +              KE     W    E+
Sbjct: 63  YVI-EVGEKLLTVHHTYPDFEITMHAFLCHPVGQRYVL----KEHIAAQWLSTREM 113

>3o8s_A Nudix hydrolase, ADP-ribose pyrophosphatase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.27A {Streptococcus suis} Length = 206

 Score = 49.0 bits (117), Expect = 3e-07
 Identities = 30/127 (23%), Positives = 56/127 (44%), Gaps = 11/127 (8%)

Query: 93  IDDIFKDFTSYKVRVPVTGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIR 152
           + D+F + T Y+     T A I  E  ++ +LV+   G  WS P G  + D+      ++
Sbjct: 56  VKDLFCNETGYQTPKLDTRAAIFQE--DKILLVQENDGL-WSLPGGWCDVDQSVKDNVVK 112

Query: 153 EVQEETGFDV--SKLL---NKDEFIEKIFGQQRVRLYIIAGVRDDTAFAPQTKKEISEIA 207
           EV+EE G DV   +++   +K +        +  +++I+  +        Q   E     
Sbjct: 113 EVKEEAGLDVEAQRVVAILDKHKNNPAKSAHRVTKVFILCRLLGGE---FQPNSETVASG 169

Query: 208 WQRLDEL 214
           +  LD+L
Sbjct: 170 FFSLDDL 176

>3ees_A Probable pyrophosphohydrolase; nudix, RNA pyrophosphohydrolase; 1.90A {Bdellovibrio bacteriovorus} PDB: 3eeu_A 3ef5_A* 3ffu_A* Length = 153

 Score = 47.3 bits (113), Expect = 8e-07
 Identities = 25/154 (16%), Positives = 42/154 (27%), Gaps = 33/154 (21%)

Query: 104 KVRVPVTGAIILDETYERCILV-----KGWKGSSWSFPRGKKNKDEEDHACAIREVQEET 158
              +PV    +  +     ILV            W FP GK    E       RE+ EE 
Sbjct: 19  GHWIPVVAGFLRKD---GKILVGQRPENNSLAGQWEFPGGKIENGETPEEALARELNEEL 75

Query: 159 GFDVSKLLNKDEFIEKIFGQQRVRLYI-IAGVRDDTAFAPQTKKEISEIAWQRLDELQ-- 215
           G +  ++          +G   + +             A    K    + W   +EL+  
Sbjct: 76  GIEA-EVGELKLACTHSYGDVGILILFYEILYWKGEPRA----KHHMMLEWIHPEELKHR 130

Query: 216 --PASDDVISHGVTGLKLYMVAPFLASLKKWISA 247
             P ++                  L  + K +  
Sbjct: 131 NIPEAN---------------RKILHKIYKALGL 149

>3r03_A Nudix hydrolase; structural genomics, PSI2, protein structure INIT NEW YORK SGX research center for structural genomics, nysgx; HET: ADP; 2.49A {Rhodospirillum rubrum} Length = 144

 Score = 46.9 bits (112), Expect = 8e-07
 Identities = 33/157 (21%), Positives = 53/157 (33%), Gaps = 32/157 (20%)

Query: 106 RVPVTGAIILDETYERCILV-----KGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGF 160
            + VT A ++D   +  +L+            W FP GK    E   A  +RE+ EE G 
Sbjct: 7   ILLVTAAALIDP--DGRVLLAQRPPGKSLAGLWEFPGGKLEPGETPEAALVRELAEELGV 64

Query: 161 DVS-KLLNKDEFIEKIFGQQRVRLYI-IAGVRDDTAFAPQTKKEISEIAWQRLDELQ--- 215
           D     L    F    +    + + +         A A    +E   +AW R + L+   
Sbjct: 65  DTRASCLAPLAFASHSYDTFHLLMPLYACRSWRGRATA----REGQTLAWVRAERLREYP 120

Query: 216 -PASDDVISHGVTGLKLYMVAPFLASLKKWISAHKPS 251
            P +D                P +  L+ W+  H   
Sbjct: 121 MPPAD---------------LPLIPILQDWLEGHHHH 142

>3hhj_A Mutator MUTT protein; niaid, ssgcid, decode, UW, SBRI, infectious diseases, hydrol structural genomics; 2.10A {Bartonella henselae} Length = 158

 Score = 47.0 bits (112), Expect = 9e-07
 Identities = 24/119 (20%), Positives = 44/119 (36%), Gaps = 16/119 (13%)

Query: 104 KVRVPVTGAIILDETYERCILV-----KGWKGSSWSFPRGKKNKDEEDHACAIREVQEET 158
            + + V  A++  +     +L+            W FP GK  + E   A  IRE++EE 
Sbjct: 27  SLLIVVACALLDQD---NRVLLTQRPEGKSLAGLWEFPGGKVEQGETPEASLIRELEEEL 83

Query: 159 GFDVSKL-LNKDEFIEKIFGQQRVRL--YIIAGVRDDTAFAPQTKKEISEIAWQRLDEL 214
           G  V    L    F    +    + +  Y  +  +       Q  +E   + W  +++L
Sbjct: 84  GVHVQADNLFPLTFASHGYETFHLLMPLYFCSHYKGV----AQ-GREGQNLKWIFINDL 137

>3f6a_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.02A {Clostridium perfringens atcc 13124} Length = 159

 Score = 46.9 bits (111), Expect = 1e-06
 Identities = 21/132 (15%), Positives = 40/132 (30%), Gaps = 23/132 (17%)

Query: 109 VTGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNK 168
                I+ +  ++ +L    K        G    +E      IRE +EE G +V+     
Sbjct: 8   TVSVFIVCK--DKVLLHLHKKAKKMLPLGGHIEVNELPEEACIREAKEEAGLNVTLYNPI 65

Query: 169 DEFIEKIFGQQRVRLYII--------------------AGVRDDTAFAPQTKKEISEIAW 208
           D  ++K       +L I                              +P+   E   + W
Sbjct: 66  DINLKKSCDLSGEKLLINPIHTILGDVSPNHSHIDFVYYATTTSFETSPEI-GESKILKW 124

Query: 209 QRLDELQPASDD 220
              ++L+ A + 
Sbjct: 125 YSKEDLKNAHNI 136

>2yyh_A MUTT domain, 8-OXO-DGTPase domain; nudix family protein, structural genomics, NPPSFA, national on protein structural and functional analyses; 1.80A {Aquifex aeolicus} Length = 139

 Score = 43.8 bits (104), Expect = 1e-05
 Identities = 22/116 (18%), Positives = 45/116 (38%), Gaps = 14/116 (12%)

Query: 107 VPVTGAIIL---DETYERCILVK-GWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDV 162
           +  T  II     E ++  +L++  +     + P G     E     A RE++EETG +V
Sbjct: 9   LLATDVIIRLWDGENFKGIVLIERKYPPVGLALPGGFVEVGERVEEAAAREMREETGLEV 68

Query: 163 SKLLNKDEFIEKIFGQ----QRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDEL 214
                  + +  ++       R  +  +     D    P+   +  ++   RL+E+
Sbjct: 69  RLH----KLM-GVYSDPERDPRAHVVSVV-WIGDAQGEPKAGSDAKKVKVYRLEEI 118

>3i9x_A MUTT/nudix family protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.20A {Listeria innocua} Length = 187

 Score = 44.4 bits (105), Expect = 1e-05
 Identities = 18/105 (17%), Positives = 35/105 (33%), Gaps = 7/105 (6%)

Query: 133 WSFPRGKKNKDEEDHACAIREVQEETGFDVS--KLLNKDEFIEKIFGQQRVRLYIIAGVR 190
           W+ P G  +++E     A RE++EET             +   +      +     A V 
Sbjct: 69  WAVPGGFVDENESAEQAAERELEEETSLTDIPLIPFGVFDKPGRDPRGWIISRAFYAIVP 128

Query: 191 DDTAFAPQTKKEISEIAWQRLDELQP---ASD--DVISHGVTGLK 230
            +         + +EI    + E      A D  D++    + + 
Sbjct: 129 PEALEKRAAGDDAAEIGLFPMTEALELPLAFDHLDMLKKAFSAIT 173

>3q93_A 7,8-dihydro-8-oxoguanine triphosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 1.80A {Homo sapiens} PDB: 1iry_A 3zr0_A* 3zr1_A Length = 176

 Score = 43.9 bits (104), Expect = 1e-05
 Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 5/60 (8%)

Query: 109 VTGAIILDETYERCILVK---GWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKL 165
            T  ++L    +R +L     G+    W+   GK  + E     A RE+QEE+G  V  L
Sbjct: 27  YTLVLVLQP--QRVLLGMKKRGFGAGRWNGFGGKVQEGETIEDGARRELQEESGLTVDAL 84

>2yvp_A NDX2, MUTT/nudix family protein; nudix protein, ADP-ribose, FAD, hydrol structural genomics, NPPSFA; HET: RBY; 1.66A {Thermus thermophilus} PDB: 2yvn_A 2yvm_A* 2yvo_A* Length = 182

 Score = 44.1 bits (105), Expect = 1e-05
 Identities = 31/147 (21%), Positives = 48/147 (32%), Gaps = 16/147 (10%)

Query: 103 YKVRVPVTGAIILDETYE-RCILVK----GWKGSSWSFPRGKKNKDEEDHACAIREVQEE 157
                PV  + +L  T     +LV+             P GK ++ E   A A RE++EE
Sbjct: 35  VYRPGPVAASFVLPVTERGTALLVRQYRHPTGKFLLEVPAGKVDEGETPEAAARRELREE 94

Query: 158 TGFDVSKLLNKDEFIEKI-----FGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLD 212
            G +   L      +        F       ++    R  T      + E+ E     L 
Sbjct: 95  VGAEAETL----IPLPSFHPQPSFTAVVFHPFLALKARVVTP-PTLEEGELLESLELPLT 149

Query: 213 ELQPA-SDDVISHGVTGLKLYMVAPFL 238
           E+    +   I    T L L+   P L
Sbjct: 150 EVYALLAKGEIQDASTALTLFYAEPHL 176

>1vhz_A ADP compounds hydrolase NUDE; structural genomics; HET: APR; 2.32A {Escherichia coli} SCOP: d.113.1.1 PDB: 1vhg_A* Length = 198

 Score = 44.2 bits (105), Expect = 1e-05
 Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 4/59 (6%)

Query: 111 GAIILDETYERCILVK----GWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKL 165
             +I+    +  IL++    G +     F +G  +  E  +  A RE++EE GF  + L
Sbjct: 51  AVMIVPIVDDHLILIREYAVGTESYELGFSKGLIDPGESVYEAANRELKEEVGFGANDL 109

>1v8y_A ADP-ribose pyrophosphatase; nudix motif, loop-helix-loop, MUTT family, riken structural genomics/proteomics initiative, RSGI; HET: APR; 1.65A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1v8v_A* 1v8n_A 1v8l_A* 1v8m_A* 1v8i_A 1v8r_A* 1v8s_A* 1v8t_A* 1v8w_A 1v8u_A Length = 170

 Score = 43.0 bits (102), Expect = 3e-05
 Identities = 18/77 (23%), Positives = 28/77 (36%), Gaps = 7/77 (9%)

Query: 89  YVAHIDDIFKDFTSYKVRVPVTGAII-LDETYERCILVKGW----KGSSWSFPRGKKNKD 143
           Y   I ++  +     V      A+I L E   R + V+        +    P G     
Sbjct: 15  YRGRILNLALEGRYEIVEHKPAVAVIALRE--GRMLFVRQMRPAVGLAPLEIPAGLIEPG 72

Query: 144 EEDHACAIREVQEETGF 160
           E+    A RE+ E+TG 
Sbjct: 73  EDPLEAARRELAEQTGL 89

>2dsc_A ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP-ribose pyrophosphatase, NUDT5, hydrolase; HET: APR; 2.00A {Homo sapiens} PDB: 2dsd_A* 3bm4_A* 2dsb_A 3aca_A* 3ac9_A* 3l85_A* Length = 212

 Score = 43.2 bits (102), Expect = 4e-05
 Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 5/59 (8%)

Query: 112 AIILD-ETYERCILVK----GWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKL 165
            ++     YE  +LVK       G    FP G  +  E   A A+RE++EETG+     
Sbjct: 68  PVLQRTLHYECIVLVKQFRPPMGGYCIEFPAGLIDDGETPEAAALRELEEETGYKGDIA 126

>2fkb_A Putative nudix hydrolase YFCD; putative protein, MAD, structural genomics, escherichia coli putative nudix hydrolase, PSI; HET: MSE; 2.00A {Escherichia coli K12} SCOP: d.113.1.2 Length = 180

 Score = 42.7 bits (101), Expect = 4e-05
 Identities = 23/96 (23%), Positives = 38/96 (39%), Gaps = 13/96 (13%)

Query: 143 DEEDHACAIREVQEETGFDVSKLLNKDEF-----IEKIFGQQRVRLYIIAGVRDDTAFAP 197
           DE+    A RE +EE G          +F       +++G     L+          FA 
Sbjct: 78  DEQLLESARREAEEELGIAGVPFAEHGQFYFEDKNCRVWGA----LFS---CVSHGPFAL 130

Query: 198 QTKKEISEIAWQRLDELQPASDDVISHGVTGLKLYM 233
           Q + E+SE+ W   +E+    D+     +  L L+M
Sbjct: 131 Q-EDEVSEVCWLTPEEITARCDEFTPDSLKALALWM 165

>2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual domains, hydrolase; HET: AMP; 2.30A {Francisella tularensis} PDB: 2r5w_B Length = 352

 Score = 43.8 bits (103), Expect = 4e-05
 Identities = 22/149 (14%), Positives = 46/149 (30%), Gaps = 14/149 (9%)

Query: 79  MFNSCDVLRPYVAHIDDIFKDFTSYKVRVPVTGAIILDETYERCILVK----GWKGSSWS 134
                  L     ++ +  + +     +        L    +  ++V+      K   W+
Sbjct: 178 DTQVYQDLVAENNYVIEYKRLWLKAPFKPNFVTVDALVIVNDHILMVQRKAHPGKDL-WA 236

Query: 135 FPRGKKNKDEEDHACAIREVQEETGFDVSKL-LNKDEFIEKIFGQ------QRVR--LYI 185
            P G    DE      IRE+ EET  +++   L   +  EK+F         R    + +
Sbjct: 237 LPGGFLECDETIAQAIIRELFEETNINLTHEQLAIAKRCEKVFDYPDRSVRGRTISHVGL 296

Query: 186 IAGVRDDTAFAPQTKKEISEIAWQRLDEL 214
               +  +        +  ++ W  L   
Sbjct: 297 FVFDQWPSLPEINAADDAKDVKWISLGSN 325

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.1 bits (103), Expect = 5e-05
 Identities = 40/206 (19%), Positives = 66/206 (32%), Gaps = 80/206 (38%)

Query: 84  DVLRPYVAHIDDIFKDFTSYKVRVPVTGAIILDETYERCILVKGWKGSSWSFPRGKKNKD 143
           D+L  +    D    +F    V           +   + IL                +K+
Sbjct: 20  DILSVFE---DAFVDNFDCKDV-----------QDMPKSIL----------------SKE 49

Query: 144 EEDHACAIREVQEETGFDVSKLLNKDE-----FIE------------------------- 173
           E DH    ++    T      LL+K E     F+E                         
Sbjct: 50  EIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMT 109

Query: 174 KIFGQQRVRLYIIAGVRDDTAFAPQT---KKEISEIAWQRLDELQPASDDVISHGVTGL- 229
           +++ +QR RLY      D+  FA       +   ++  Q L EL+PA  +V+  GV G  
Sbjct: 110 RMYIEQRDRLY-----NDNQVFAKYNVSRLQPYLKLR-QALLELRPA-KNVLIDGVLGSG 162

Query: 230 KLYMVAPFLASLKK---------WIS 246
           K ++      S K          W++
Sbjct: 163 KTWVALDVCLSYKVQCKMDFKIFWLN 188

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.5 bits (99), Expect = 1e-04
 Identities = 54/382 (14%), Positives = 96/382 (25%), Gaps = 127/382 (33%)

Query: 19  PQELLDDLCSRFVLNVPQEDQQSFERILF-------------LVEYAH-----WFYEDNS 60
           P+ +L       ++        +    LF              VE        +      
Sbjct: 42  PKSILSKEEIDHIIMSKDAVSGT--LRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIK 99

Query: 61  VENN-PSLKSFTLKEFTSLMFNSCDVLRPY-VAHIDDIFKDFTSYKVRVPVTGAIILDET 118
            E   PS+ +    E    ++N   V   Y V+ +          K+R      + L   
Sbjct: 100 TEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPY------LKLR---QALLELRP- 149

Query: 119 YERCILVKGWKGS--SW-------------SFPR-------GKKNKDEE----------- 145
             + +L+ G  GS  +W                           N  E            
Sbjct: 150 -AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ 208

Query: 146 ---------DHACAIREVQEETGFDVSKLLNKDEFIEKIFGQQRVR-LYIIAGVRDDT-- 193
                    DH+  I+               + E    +  +     L ++  V++    
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHSI---------QAELRRLLKSKPYENCLLVLLNVQNAKAW 259

Query: 194 -AFAPQ-----TKKEISEIAWQRLDELQPASDDVIS--HGVTGLKLYMVAPFLASLKKWI 245
            AF        T +          D L  A+   IS  H    L    V   L    K++
Sbjct: 260 NAFNLSCKILLTTRFKQVT-----DFLSAATTTHISLDHHSMTLTPDEVKSLLL---KYL 311

Query: 246 SAHK---PSIAPKHDMPL----------KGVCVWKAKNNSIGSNTIALESQLTKVASDSQ 292
                  P      + P            G+  W   +N    N   L + + + + +  
Sbjct: 312 DCRPQDLPREVLTTN-PRRLSIIAESIRDGLATW---DNWKHVNCDKLTTII-ESSLNVL 366

Query: 293 PPDTGPGKSFRNFRFDTAAILQ 314
            P       +R   FD  ++  
Sbjct: 367 EPAE-----YRK-MFDRLSVFP 382

>1mk1_A ADPR pyrophosphatase; nudix hydrolase, adprase, adenosine DI ribose, RV1700, hydrolase; HET: APR; 2.00A {Mycobacterium tuberculosis} SCOP: d.113.1.1 PDB: 1mp2_A 1mqe_A* 1mqw_A* 1mr2_A* Length = 207

 Score = 42.7 bits (101), Expect = 5e-05
 Identities = 22/118 (18%), Positives = 40/118 (33%), Gaps = 21/118 (17%)

Query: 107 VPVTGAIILDETYERCILVKGW----KGSSWSFPRGKKNKDEED-HACAIREVQEETGFD 161
           V +              +V  +        W  P G  +   E  H  A RE++EE G  
Sbjct: 49  VAMDDN-------GNIPMVYQYRHTYGRRLWELPAGLLDVAGEPPHLTAARELREEVGLQ 101

Query: 162 VSKLLNKDEFIEKI-----FGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDEL 214
            S      + +  +     F  + VR+Y+  G+R+        ++    + W  + E 
Sbjct: 102 ASTW----QVLVDLDTAPGFSDESVRVYLATGLREVGRPEAHHEEADMTMGWYPIAEA 155

>2w4e_A MUTT/nudix family protein; ADP-ribose pyrophosphatase, hydrolase; 2.00A {Deinococcus radiodurans} Length = 145

 Score = 41.0 bits (97), Expect = 8e-05
 Identities = 30/147 (20%), Positives = 44/147 (29%), Gaps = 31/147 (21%)

Query: 107 VPVT--GAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSK 164
           +PVT  G  +L   + R       + +      G   K E+  A A RE+ EE G   S+
Sbjct: 11  LPVTAQGEAVLIRQF-R----YPLRATITEIVAGGVEKGEDLGAAAARELLEEVGGAASE 65

Query: 165 LLNKDEFIEKI-----FGQQRVRLYIIAGVR------DDTAFAPQTKKEISEIAWQRLDE 213
                  +                 +  GV       +DT        E  E     L E
Sbjct: 66  W----VPLPGFYPQPSISGVVFYPLLALGVTLGAAQLEDT--------ETIERVVLPLAE 113

Query: 214 LQPA-SDDVISHGVTGLKLYMVAPFLA 239
           +        I  G + L L+     L 
Sbjct: 114 VYRMLEAGEIQDGPSSLTLWQARGELT 140

>1q27_A Putative nudix hydrolase DR0079; radiation resistance; NMR {Deinococcus radiodurans} SCOP: d.113.1.2 PDB: 2o5f_A Length = 171

 Score = 41.2 bits (97), Expect = 1e-04
 Identities = 13/73 (17%), Positives = 22/73 (30%), Gaps = 3/73 (4%)

Query: 144 EEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQQRVR-LYIIAGVRDDTAFAPQTKKE 202
           E       RE +EE   ++   L+          Q  +     +  +R D         +
Sbjct: 76  ETYEEAFRREAREELNVEID-ALSWRPLASFSPFQTTLSSFMCVYELRSDATPIFN-PND 133

Query: 203 ISEIAWQRLDELQ 215
           IS   W   + L 
Sbjct: 134 ISGGEWLTPEHLL 146

>1g0s_A Hypothetical 23.7 kDa protein in ICC-TOLC intergenic region; nudix fold, hydrolase; 1.90A {Escherichia coli} SCOP: d.113.1.1 PDB: 1g9q_A* 1ga7_A 1khz_A* 1viq_A Length = 209

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 13/58 (22%), Positives = 17/58 (29%)

Query: 108 PVTGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKL 165
           PV   ++L E                    G   + E     A RE  EE G  V + 
Sbjct: 67  PVRDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGESVEDVARREAIEEAGLIVKRT 124

>1nqz_A COA pyrophosphatase (MUTT/nudix family protein); D.radiodurans, hydrolase; 1.70A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1nqy_A Length = 194

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 17/90 (18%), Positives = 32/90 (35%), Gaps = 16/90 (17%)

Query: 133 WSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQ----QRVRLYII-- 186
            +FP G  +  E     A+RE QEE   D + +         + G+         + +  
Sbjct: 66  IAFPGGSLDAGETPTQAALREAQEEVALDPAAV--------TLLGELDDVFTPVGFHVTP 117

Query: 187 --AGVRDDTAFAPQTKKEISEIAWQRLDEL 214
               +  +     +   E+++I    L EL
Sbjct: 118 VLGRIAPEALDTLRVTPEVAQIITPTLAEL 147

>2o1c_A DATP pyrophosphohydrolase; nudix NTP hydrolase NTP pyrophosphohydrolase MUTT dihydroneo triphosphate pyrophosphohydrolase folate biosynthesis; 1.80A {Escherichia coli} PDB: 2o5w_A Length = 150

 Score = 39.9 bits (93), Expect = 2e-04
 Identities = 17/62 (27%), Positives = 24/62 (38%)

Query: 103 YKVRVPVTGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDV 162
           YK  V +   I   +T    +L +      W    G   + E     A+REV+EE   DV
Sbjct: 6   YKRPVSILVVIYAQDTKRVLMLQRRDDPDFWQSVTGSVEEGETAPQAAMREVKEEVTIDV 65

Query: 163 SK 164
             
Sbjct: 66  VA 67

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	322
2a6t_A	271	SPAC19A8.12; alpha/beta/alpha, RNA binding protein	100.0
2qkl_B	95	SPAC19A8.12 protein, SPBC3B9.21 protein; protein-p	99.98
2jvb_A	146	Protein PSU1, mRNA-decapping enzyme subunit 2; DCP	99.89
3q1p_A	205	Phosphohydrolase (MUTT/nudix family protein); asym	99.83
3i7u_A	134	AP4A hydrolase; nudix protein, diadenosine polypho	99.81
3o8s_A	206	Nudix hydrolase, ADP-ribose pyrophosphatase; struc	99.8
3u53_A	155	BIS(5'-nucleosyl)-tetraphosphatase [asymmetrical];	99.8
2yyh_A	139	MUTT domain, 8-OXO-DGTPase domain; nudix family pr	99.79
2w4e_A	145	MUTT/nudix family protein; ADP-ribose pyrophosphat	99.79
3gg6_A	156	Nudix motif 18, nucleoside diphosphate-linked moie	99.78
3grn_A	153	MUTT related protein; structural genomics, hydrola	99.78
3fcm_A	197	Hydrolase, nudix family; protein structure initiat	99.76
3o6z_A	191	GDP-mannose pyrophosphatase NUDK; nudix, hydrolase	99.76
3cng_A	189	Nudix hydrolase; structural genomics, APC7497, PSI	99.76
1vhz_A	198	ADP compounds hydrolase NUDE; structural genomics;	99.75
1g0s_A	209	Hypothetical 23.7 kDa protein in ICC-TOLC intergen	99.75
3f6a_A	159	Hydrolase, nudix family; protein structure initiat	99.75
4dyw_A	157	MUTT/nudix family protein; structural genomics, ni	99.75
3h95_A	199	Nucleoside diphosphate-linked moiety X motif 6; NU	99.75
3gwy_A	140	Putative CTP pyrophosphohydrolase; structural geno	99.75
2pbt_A	134	AP4A hydrolase; nudix protein, diadenosine polypho	99.75
3eds_A	153	MUTT/nudix family protein; MUT/nudix protein, prot	99.75
2yvp_A	182	NDX2, MUTT/nudix family protein; nudix protein, AD	99.75
3shd_A	153	Phosphatase NUDJ; nudix fold, nudix motif, hydrola	99.74
1vcd_A	126	NDX1; nudix protein, diadenosine polyphosphate, AP	99.74
3q91_A	218	Uridine diphosphate glucose pyrophosphatase; struc	99.74
3id9_A	171	MUTT/nudix family protein; hydrolase, protein stru	99.74
1sjy_A	159	MUTT/nudix family protein; nudix fold, alpha-beta-	99.74
1ktg_A	138	Diadenosine tetraphosphate hydrolase; nudix, AMP,	99.74
3son_A	149	Hypothetical nudix hydrolase; structural genomics,	99.73
3r03_A	144	Nudix hydrolase; structural genomics, PSI2, protei	99.73
3fsp_A	369	A/G-specific adenine glycosylase; protein-DNA comp	99.73
1v8y_A	170	ADP-ribose pyrophosphatase; nudix motif, loop-heli	99.72
3exq_A	161	Nudix family hydrolase; protein structure initiati	99.72
2kdv_A	164	RNA pyrophosphohydrolase; nudix family, magnesium,	99.72
2fkb_A	180	Putative nudix hydrolase YFCD; putative protein, M	99.72
1mk1_A	207	ADPR pyrophosphatase; nudix hydrolase, adprase, ad	99.71
3fk9_A	188	Mutator MUTT protein; structural genomics, hydrola	99.71
3oga_A	165	Nucleoside triphosphatase NUDI; salmonella enteric	99.71
2azw_A	148	MUTT/nudix family protein; MUTT/nudix ,enterococcu	99.71
3i9x_A	187	MUTT/nudix family protein; structural genomics, hy	99.71
2o1c_A	150	DATP pyrophosphohydrolase; nudix NTP hydrolase NTP	99.71
1f3y_A	165	Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase	99.7
3ees_A	153	Probable pyrophosphohydrolase; nudix, RNA pyrophos	99.7
2rrk_A	140	ORF135, CTP pyrophosphohydrolase; NMR {Escherichia	99.7
3hhj_A	158	Mutator MUTT protein; niaid, ssgcid, decode, UW, S	99.7
1rya_A	160	GDP-mannose mannosyl hydrolase; GDP-glucose, nudix	99.7
2b0v_A	153	Nudix hydrolase; structural genomics, PSI, protein	99.69
2fb1_A	226	Conserved hypothetical protein; structural genomic	99.69
1vk6_A	269	NADH pyrophosphatase; 1790429, structural genomics	99.68
3q93_A	176	7,8-dihydro-8-oxoguanine triphosphatase; structura	99.68
3f13_A	163	Putative nudix hydrolase family member; structural	99.68
2pqv_A	154	MUTT/nudix family protein; structu genomics, PSI-2	99.68
1k2e_A	156	Nudix homolog; nudix/MUTT-like fold, mixed alpha/b	99.67
2fvv_A	194	Diphosphoinositol polyphosphate phosphohydrolase 1	99.67
2b06_A	155	MUTT/nudix family protein; structural genomics, P	99.67
1mut_A	129	MUTT, nucleoside triphosphate pyrophosphohydrolase	99.66
1nqz_A	194	COA pyrophosphatase (MUTT/nudix family protein); D	99.66
2dsc_A	212	ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP	99.65
1q27_A	171	Putative nudix hydrolase DR0079; radiation resista	99.65
1x51_A	155	A/G-specific adenine DNA glycosylase; nudix domain	99.64
1hzt_A	190	Isopentenyl diphosphate delta-isomerase; dimethyla	99.63
3fjy_A	364	Probable MUTT1 protein; dimer, protein structure i	99.62
2fml_A	273	MUTT/nudix family protein; structural genomics, PS	99.62
2qjt_B	352	Nicotinamide-nucleotide adenylyltransferase; two i	99.61
3gz5_A	240	MUTT/nudix family protein; DNA binding protein, nu	99.6
2qjo_A	341	Bifunctional NMN adenylyltransferase/nudix hydrol;	99.59
3e57_A	211	Uncharacterized protein TM1382; structural genomic	99.57
1u20_A	212	U8 snoRNA-binding protein X29; modified nudix hydr	99.49
1q33_A	292	Pyrophosphatase, ADP-ribose pyrophosphatase; nudix	99.46
2dho_A	235	Isopentenyl-diphosphate delta-isomerase 1; alpha/b	99.42
2pny_A	246	Isopentenyl-diphosphate delta-isomerase 2; caroten	99.4
2xsq_A	217	U8 snoRNA-decapping enzyme; hydrolase, mRNA decapp	99.36
3qsj_A	232	Nudix hydrolase; structural genomics, PSI-biology,	99.3
3bho_A	208	Cleavage and polyadenylation specificity factor su	99.22
3dup_A	300	MUTT/nudix family protein; nudix superfamily hydro	99.15
3rh7_A	321	Hypothetical oxidoreductase; FMN-binding split bar	99.13
3kvh_A	214	Protein syndesmos; NUDT16-like, NUDT16L1, nudix, R	98.84

>2a6t_A SPAC19A8.12; alpha/beta/alpha, RNA binding protein,hydrolase; 2.50A {Schizosaccharomyces pombe} SCOP: a.242.1.1 d.113.1.7 PDB: 2qkm_B*

Probab=100.00  E-value=1e-49  Score=369.02  Aligned_cols=235  Identities=47%  Similarity=0.836  Sum_probs=192.1

Q ss_pred             CCCCchhHHHhhhhhhhccCChhhhhchHHHHHHHhhhheeeeeCCccCCCCCCcchHHHHHHHHhCCCCcccccccchh
Q 020742           15 GGLPPQELLDDLCSRFVLNVPQEDQQSFERILFLVEYAHWFYEDNSVENNPSLKSFTLKEFTSLMFNSCDVLRPYVAHID   94 (322)
Q Consensus        15 ~~~~~~~~l~dl~~Rfi~n~p~~~~~~~~rl~f~ie~a~w~y~d~~~~~~p~l~~~~l~~f~~~l~~~~~~l~~~~~~~~   94 (322)
                      ...+++++|||||+|||+|+|++|+++++|||||||+|||||+||++..+|.+|.+.++.|+..+|++|+.+.++....+
T Consensus         9 ~~~~~~~~l~dl~~rfi~n~p~~~~~~~~~~~f~ie~a~wfy~d~~~~~~~~~p~~~~~~f~~~~f~~~~~l~~~~~~~~   88 (271)
T 2a6t_A            9 TNATFSQVLDDLSARFILNLPAEEQSSVERLCFQIEQAHWFYEDFIRAQNDQLPSLGLRVFSAKLFAHCPLLWKWSKVHE   88 (271)
T ss_dssp             SCCCTHHHHHHHHHHHTTTSCGGGTTCHHHHHHHHHHHHHHHHHTHHHHCSSSCCCCHHHHHHHHHTTCHHHHHC---CC
T ss_pred             CCCCHHHHHHHHHHHHhhcCCHHHhccHHHHHHHHHHHHHHHHHhhhhcccCCCcccHHHHHHHHhhhhhhhhcccccch
Confidence            44789999999999999999999999999999999999999999999999999999999999999999999888888778


Q ss_pred             HHHhhhcCCcccccEEEEEEEeCCCCEEEEEEeeC-CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeeeee
Q 020742           95 DIFKDFTSYKVRVPVTGAIILDETYERCILVKGWK-GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIE  173 (322)
Q Consensus        95 ~~~~~~~~y~~~v~v~g~Iv~~~~~~kvLLvrr~~-~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~~~  173 (322)
                      +.+..|+.|+++++++++||++++.++|||+++++ ++.|+||||++++||++.+||+||++||||+++..+..+..+..
T Consensus        89 ~~~~~~~~~~~~v~~v~avv~~~~~~~vLLv~r~~~~g~W~lPgG~ve~gEs~~eAA~REl~EEtGl~~~~l~~~~~~~~  168 (271)
T 2a6t_A           89 EAFDDFLRYKTRIPVRGAIMLDMSMQQCVLVKGWKASSGWGFPKGKIDKDESDVDCAIREVYEETGFDCSSRINPNEFID  168 (271)
T ss_dssp             HHHHHHHHHSCCCCEEEEEEBCSSSSEEEEEEESSTTCCCBCSEEECCTTCCHHHHHHHHHHHHHCCCCTTTCCTTCEEE
T ss_pred             hHHHHHHhcCCCCCeEEEEEEECCCCEEEEEEEeCCCCeEECCcccCCCCcCHHHHHHHHHHHHhCCCceeeeeeeeecc
Confidence            99999999999999999999987546999999977 78999999999999999999999999999999988665544444


Q ss_pred             cccCeEEEEEEEEEeecCCCCCCCCCccceeeEEEEecccccccCCCccchhhhhhhhhhhhhhHHHHHHHHHhcCCC
Q 020742          174 KIFGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPASDDVISHGVTGLKLYMVAPFLASLKKWISAHKPS  251 (322)
Q Consensus       174 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~~~~~~~~~~~~~~~~~v~pf~~~L~~wi~~~~~~  251 (322)
                      ....+..+++|++........+.+.+.+|+.++.|+++++++++....  ....+..++++.|++.+|++|+..++.+
T Consensus       169 ~~~~~~~~~~f~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~--~~~~~~~~~~~~p~~~~L~~wl~~~~~~  244 (271)
T 2a6t_A          169 MTIRGQNVRLYIIPGISLDTRFESRTRKEISKIEWHNLMDLPTFKKNK--PQTMKNKFYMVIPFLAPLKKWIKKRNIA  244 (271)
T ss_dssp             EEETTEEEEEEEECCCCTTCCCC------EEEEEEEEGGGSTTCC--------CCGGGTTTGGGHHHHHHHHHHHHHH
T ss_pred             CCcCCceEEEEEEEEecCcccCCCCCccceeEEEEEEHHHHHHHHhcC--ccccccchhhhhHHHHHHHHHHHhcCcc
Confidence            444456677787765544333344467899999999999998853221  1113456789999999999999977654

>2qkl_B SPAC19A8.12 protein, SPBC3B9.21 protein; protein-protein complex, hydrolase; 2.33A {Schizosaccharomyces pombe} SCOP: a.242.1.1

Probab=99.98  E-value=9.7e-34  Score=219.21  Aligned_cols=92  Identities=40%  Similarity=0.731  Sum_probs=85.9

Q ss_pred             CCCCchhHHHhhhhhhhccCChhhhhchHHHHHHHhhhheeeeeCCccCCCCCCcchHHHHHHHHhCCCCcccccccchh
Q 020742           15 GGLPPQELLDDLCSRFVLNVPQEDQQSFERILFLVEYAHWFYEDNSVENNPSLKSFTLKEFTSLMFNSCDVLRPYVAHID   94 (322)
Q Consensus        15 ~~~~~~~~l~dl~~Rfi~n~p~~~~~~~~rl~f~ie~a~w~y~d~~~~~~p~l~~~~l~~f~~~l~~~~~~l~~~~~~~~   94 (322)
                      ++.++++||||||+|||+|+|++|+++++|||||||+|||||+||++++||.||++++++|+..++++|+.++++..+++
T Consensus         4 ~~~~~~~iLdDL~~RFIiN~P~eel~s~eRl~FqiEeA~WfY~Df~~~~np~Lp~~~lk~F~~~if~~cp~L~~~~~~~~   83 (95)
T 2qkl_B            4 TNATFSQVLDDLSARFILNLPAEEQSSVERLCFQIEQAHWFYEDFIRAQNDQLPSLGLRVFSAKLFAHCPLLWKWSKVHE   83 (95)
T ss_dssp             TTCCHHHHHHHHHHHHTTTCCGGGSSCHHHHHHHHHHHHHHHHHTTTTTCTTSCCCCHHHHHHHHHHHCTHHHHHHTCCH
T ss_pred             CcCCHHHHHHHHHHHHHHcCCHHHhhhHHHHHHHHHhheeehcccccccCCCCCCCcHHHHHHHHHHhCHHHHhccccHH
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhcCCccc
Q 020742           95 DIFKDFTSYKVR  106 (322)
Q Consensus        95 ~~~~~~~~y~~~  106 (322)
                      +++++|++||++
T Consensus        84 ~~~~~F~~YK~~   95 (95)
T 2qkl_B           84 EAFDDFLRYKTR   95 (95)
T ss_dssp             HHHHHHHC----
T ss_pred             HHHHHHHHhccC
Confidence            999999999974

>2jvb_A Protein PSU1, mRNA-decapping enzyme subunit 2; DCP2, mRNA decay, cytoplasm, hydrolase, manganese, metal-binding, mRNA processing; NMR {Saccharomyces cerevisiae}

Probab=99.89  E-value=4.3e-23  Score=171.49  Aligned_cols=140  Identities=34%  Similarity=0.752  Sum_probs=105.7

Q ss_pred             ccccEEEEEEEeCCCCEEEEEEeeCCCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeeeeecccCeEEEEEE
Q 020742          105 VRVPVTGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQQRVRLY  184 (322)
Q Consensus       105 ~~v~v~g~Iv~~~~~~kvLLvrr~~~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~~~~~~~~~~~~~y  184 (322)
                      +.+++++++|++++.++|||+++...|.|.||||+++.||++.+||+||++||||+++..+..+..+..........++|
T Consensus         2 ~~i~~~~~~i~~~~~~~vLl~~r~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~   81 (146)
T 2jvb_A            2 KSIPVRGAAIFNENLSKILLVQGTESDSWSFPRGKISKDENDIDCCIREVKEEIGFDLTDYIDDNQFIERNIQGKNYKIF   81 (146)
T ss_dssp             CCSCCEEEEEBCTTSSEEEEECCSSSSCCBCCEECCCSSSCHHHHHHHHHHHHTSCCCSSSSCSSCEEEEEETTEEEEEE
T ss_pred             ceeEEEEEEEEeCCCCEEEEEEEcCCCcEECCcccCCCCCCHHHHHHHHHHHHHCCCchHhcccccccccccCCceEEEE
Confidence            46778889998876459999998778999999999999999999999999999999988765555444333334455666


Q ss_pred             EEEeecCCCCCCCCCccceeeEEEEecccccccCCCccchhhhhhhhhhhhhhHHHHHHHHHhcCC
Q 020742          185 IIAGVRDDTAFAPQTKKEISEIAWQRLDELQPASDDVISHGVTGLKLYMVAPFLASLKKWISAHKP  250 (322)
Q Consensus       185 ~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~~~~~~~~~~~~~~~~~v~pf~~~L~~wi~~~~~  250 (322)
                      ++..........+...+|+.++.|++++++..+...      ....++++.|++..++.|+.+++.
T Consensus        82 ~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~------~~~~~~l~~~~~~~l~~~~~~~~~  141 (146)
T 2jvb_A           82 LISGVSEVFNFKPQVRNEIDKIEWFDFKKISKTMYK------SNIKYYLINSMMRPLSMWLRHQRQ  141 (146)
T ss_dssp             EECCCCSSSCCCCCCSSSCCCEEEEEHHHHHTGGGC------SSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEeccccccCCcCCcchhheeEEeEHHHHHhhhcc------cchhhhhHHHHHHHHHHHHHHhhC
Confidence            665444333334445788999999999999884211      112456788999999999987654

>3q1p_A Phosphohydrolase (MUTT/nudix family protein); asymmetric dimer, RNA exonuclease, CDP-CHO pyrophosphatase; 1.80A {Bacillus cereus} PDB: 3q4i_A

Probab=99.83  E-value=2e-20  Score=165.41  Aligned_cols=162  Identities=20%  Similarity=0.267  Sum_probs=116.7

Q ss_pred             HHHHHHHhhhheeee-eC-CccCCCCCCcchHHHHHHHHhCCCCcccccccchhHHHhhhcCCcccccEEEEEEEeCCCC
Q 020742           43 ERILFLVEYAHWFYE-DN-SVENNPSLKSFTLKEFTSLMFNSCDVLRPYVAHIDDIFKDFTSYKVRVPVTGAIILDETYE  120 (322)
Q Consensus        43 ~rl~f~ie~a~w~y~-d~-~~~~~p~l~~~~l~~f~~~l~~~~~~l~~~~~~~~~~~~~~~~y~~~v~v~g~Iv~~~~~~  120 (322)
                      .||. +|-|+..+|. |. .++++     ..+++++..+...+....  ...+++.+.....|.+...+++++|+++  +
T Consensus        10 ~~~~-~~a~~g~~y~~~~~d~er~-----~~l~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~v~~vv~~~--~   79 (205)
T 3q1p_A           10 KQIQ-SIAQAGLTYSKDVYDIERF-----QQLRDISISMMSHYTKTD--WEVVEKLFASETGYQTPKVDIRAVVFQN--E   79 (205)
T ss_dssp             HHHH-HHHHHHHHHCCCHHHHHHH-----HHHHHHHHHHHHHHTTCC--HHHHHHHHSCCCSSCCCEEEEEEEEEET--T
T ss_pred             HHHH-HHHHhhhccCCCCccHHHH-----HHHHHHHHHHHHhcccCC--HHHHHHHHccccCCCCCcceEEEEEEEC--C
Confidence            4444 7888989986 43 34443     678999988887666443  2457788888889999888888888885  3


Q ss_pred             EEEEEEeeCCCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeeeee-----cccCeEEEE-EEEEEeecCCCC
Q 020742          121 RCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIE-----KIFGQQRVR-LYIIAGVRDDTA  194 (322)
Q Consensus       121 kvLLvrr~~~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~~~-----~~~~~~~~~-~y~~~~~~~~~~  194 (322)
                      +|||+++...|.|+||||+++.||++.+||+||++||||+++.....+..+..     .....+.+. +|.+....+.  
T Consensus        80 ~vLLv~r~~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  157 (205)
T 3q1p_A           80 KLLFVKEKSDGKWALPGGWADVGYTPTEVAAKEVFEETGYEVDHFKLLAIFDKEKHQPSPSATHVYKIFIGCEIIGGE--  157 (205)
T ss_dssp             EEEEEEC---CCEECSEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEEHHHHSCCCCSSCEEEEEEEEEEEEEC--
T ss_pred             EEEEEEEcCCCcEECCcCccCCCCCHHHHHHHHHHHHHCCccccceEEEEEeccccCCCCCCceEEEEEEEEEecCCc--
Confidence            99999998788999999999999999999999999999999886544433321     122233444 4444333332  


Q ss_pred             CCCCCccceeeEEEEecccccccC
Q 020742          195 FAPQTKKEISEIAWQRLDELQPAS  218 (322)
Q Consensus       195 ~~~~~~~Ei~~~~Wv~ldeL~~~~  218 (322)
                        +....|+.++.|+++++|+.+.
T Consensus       158 --~~~~~E~~~~~w~~~~el~~l~  179 (205)
T 3q1p_A          158 --KKTSIETEEVEFFGENELPNLS  179 (205)
T ss_dssp             --CCCCTTSCCEEEECTTSCCCBC
T ss_pred             --cCCCCcceEEEEEeHHHhhhcC
Confidence              2334889999999999998853

>3i7u_A AP4A hydrolase; nudix protein, diadenosine polyphosphate, S genomics, NPPSFA, national project on protein structural AN functional analyses; HET: PGE PG4; 1.80A {Aquifex aeolicus} PDB: 3i7v_A*

Probab=99.81  E-value=1.5e-19  Score=149.25  Aligned_cols=103  Identities=24%  Similarity=0.428  Sum_probs=75.5

Q ss_pred             cEEEEEEEeCCCCEEEEEEeeCCCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeee--eeecccC---eEEEE
Q 020742          108 PVTGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDE--FIEKIFG---QQRVR  182 (322)
Q Consensus       108 ~v~g~Iv~~~~~~kvLLvrr~~~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~--~~~~~~~---~~~~~  182 (322)
                      .++|+||++++  +|||+++. .|.|+||||++++|||+.+||+||++||||+++.....+..  +.....+   ...++
T Consensus         5 ~aag~vv~~~~--~vLL~~r~-~g~W~~PgG~ve~gEt~~~aa~RE~~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~~~~   81 (134)
T 3i7u_A            5 FSAGGVLFKDG--EVLLIKTP-SNVWSFPKGNIEPGEKPEETAVREVWEETGVKGEILDYIGEIHYWYTLKGERIFKTVK   81 (134)
T ss_dssp             EEEEEEEEETT--EEEEEECT-TSCEECCEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEEEEEEETTEEEEEEEE
T ss_pred             EEEEEEEEECC--EEEEEEeC-CCcEECCeeEecCCCCHHHHHHHHHHHhcCceEEEeeeeeeeeEEecCCCceEEEEEE
Confidence            36788888764  99999975 58899999999999999999999999999999876544432  2111111   22344


Q ss_pred             EEEEEeecCCCCCCCCCccceeeEEEEeccccccc
Q 020742          183 LYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  217 (322)
Q Consensus       183 ~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~  217 (322)
                      +|.+....+.    +...+|+.+++|+++++++++
T Consensus        82 ~f~~~~~~~~----~~~~~E~~~~~W~~~~e~~~~  112 (134)
T 3i7u_A           82 YYLMKYKEGE----PRPSWEVKDAKFFPIKEAKKL  112 (134)
T ss_dssp             EEEEEEEEEC----CCCCTTSSEEEEEEHHHHHHH
T ss_pred             EEEEEEcCCc----CcCChhheEEEEEEHHHHhhh
Confidence            5655544433    333578999999999999873

>3o8s_A Nudix hydrolase, ADP-ribose pyrophosphatase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.27A {Streptococcus suis}

Probab=99.80  E-value=2.5e-19  Score=158.42  Aligned_cols=157  Identities=20%  Similarity=0.257  Sum_probs=78.2

Q ss_pred             HHhhhheeee-eC-CccCCCCCCcchHHHHHHHHhCCCCcccccccchhHHHhhhcCCcccccEEEEEEEeCCCCEEEEE
Q 020742           48 LVEYAHWFYE-DN-SVENNPSLKSFTLKEFTSLMFNSCDVLRPYVAHIDDIFKDFTSYKVRVPVTGAIILDETYERCILV  125 (322)
Q Consensus        48 ~ie~a~w~y~-d~-~~~~~p~l~~~~l~~f~~~l~~~~~~l~~~~~~~~~~~~~~~~y~~~v~v~g~Iv~~~~~~kvLLv  125 (322)
                      +|-|+.++|. |. .+++     ...+++++..+........  ...++..+.....|.+...+++++|+++  ++|||+
T Consensus        16 ~~a~~gl~~~~~~~d~er-----~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~y~~~~~~v~~vv~~~--~~vLLv   86 (206)
T 3o8s_A           16 ALAQTGLAYGKDVYDMER-----FEEIRQIAAEMLVEPSGQP--LEVVKDLFCNETGYQTPKLDTRAAIFQE--DKILLV   86 (206)
T ss_dssp             -----------------------------------------------------------CCEEEEEEEEEET--TEEEEE
T ss_pred             HHHHhhhccCCCchhHHH-----HHHHHHHHHHHHHhccCCC--HHHHHHHhccccCCCCCCccEEEEEEEC--CEEEEE
Confidence            7888999996 33 3344     3667778887776655432  2446777888888988777777888876  399999


Q ss_pred             EeeCCCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeeeee-----cccCeEEE-EEEEEEeecCCCCCCCCC
Q 020742          126 KGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIE-----KIFGQQRV-RLYIIAGVRDDTAFAPQT  199 (322)
Q Consensus       126 rr~~~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~~~-----~~~~~~~~-~~y~~~~~~~~~~~~~~~  199 (322)
                      ++. .+.|+||||+++.||++.+||+||++||||+++.....+..+..     .....+.+ .+|.+....+.    +..
T Consensus        87 rr~-~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~  161 (206)
T 3o8s_A           87 QEN-DGLWSLPGGWCDVDQSVKDNVVKEVKEEAGLDVEAQRVVAILDKHKNNPAKSAHRVTKVFILCRLLGGE----FQP  161 (206)
T ss_dssp             ECT-TSCEECSEEECCTTSCHHHHHHHHHHHHHCEEEEEEEEEEEEEHHHHCC-----CEEEEEEEEEEEEEC----CCC
T ss_pred             Eec-CCeEECCeeccCCCCCHHHHHHHHHHHHHCCcceeeeEEEEEeccccCCCCCCceEEEEEEEEEecCCe----ecC
Confidence            988 89999999999999999999999999999999876544443321     11122333 34444333332    223


Q ss_pred             ccceeeEEEEecccccccC
Q 020742          200 KKEISEIAWQRLDELQPAS  218 (322)
Q Consensus       200 ~~Ei~~~~Wv~ldeL~~~~  218 (322)
                      ..|+.++.|+++++|+.+.
T Consensus       162 ~~E~~~~~w~~~~el~~l~  180 (206)
T 3o8s_A          162 NSETVASGFFSLDDLPPLY  180 (206)
T ss_dssp             CSSCSEEEEECTTSCCCBC
T ss_pred             CCCceEEEEEeHHHhhhcc
Confidence            4788999999999999863

>3u53_A BIS(5'-nucleosyl)-tetraphosphatase [asymmetrical]; hydrolase; 2.71A {Homo sapiens} PDB: 1xsa_A 1xsb_A 1xsc_A*

Probab=99.80  E-value=1e-18  Score=146.98  Aligned_cols=129  Identities=19%  Similarity=0.284  Sum_probs=86.6

Q ss_pred             ccEEEEEEEe--------CCCCEEEEEEeeC-CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeeee----e
Q 020742          107 VPVTGAIILD--------ETYERCILVKGWK-GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFI----E  173 (322)
Q Consensus       107 v~v~g~Iv~~--------~~~~kvLLvrr~~-~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~~----~  173 (322)
                      +.+||+||+.        .+..++||+++.. .+.|.||||++++|||+.+||+||++||||+++.....+..+.    .
T Consensus         3 ~ra~G~iifr~~~~~~~~n~~~e~LL~~r~~~~~~W~lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~   82 (155)
T 3u53_A            3 LRACGLIIFRRCLIPKVDNNAIEFLLLQASDGIHHWTPPKGHVEPGEDDLETALRETQEEAGIEAGQLTIIEGFKRELNY   82 (155)
T ss_dssp             -CEEEEEEEEECCCSSSSSCSEEEEEEEESSSSCCEECSEEECCSSCCHHHHHHHHHHHHHCCCGGGEEEEEEEEEEEEE
T ss_pred             ceEeEEEEEccccccceeCCCcEEEEEEecCCCCCEECCeeeccCCCCHHHHHHHHHHHHHCCccccceeeeeEeeeeec
Confidence            5678999873        3345999999876 6889999999999999999999999999999988654433221    1


Q ss_pred             cc-cCeEEEEEEEEEeecCCCCCCCCCccceeeEEEEecccccccCCCccchhhhhhhhhhhhhhHHHHHHHHHhc
Q 020742          174 KI-FGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPASDDVISHGVTGLKLYMVAPFLASLKKWISAH  248 (322)
Q Consensus       174 ~~-~~~~~~~~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~~~~~~~~~~~~~~~~~v~pf~~~L~~wi~~~  248 (322)
                      .. .......+|++.......  .+...+|+.+++|++++++.++..           +-.....+....++|...
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~E~~~~~W~~~~ea~~~~~-----------~~~~~~~L~~a~~~L~~~  145 (155)
T 3u53_A           83 VARNKPKTVIYWLAEVKDYDV--EIRLSHEHQAYRWLGLEEACQLAQ-----------FKEMKAALQEGHQFLCSI  145 (155)
T ss_dssp             EETTEEEEEEEEEEEESCTTC--CCCCCTTEEEEEEECHHHHHHHHC-----------SHHHHHHHHHHHHHHHHH
T ss_pred             CCCcceeEEEEEEEEEeccCC--ccCCCcceeEEEEeEHHHHHHHcC-----------CHHHHHHHHHHHHHHhCc
Confidence            11 222334445554443332  233457899999999999876311           112234455666666654

>2yyh_A MUTT domain, 8-OXO-DGTPase domain; nudix family protein, structural genomics, NPPSFA, national on protein structural and functional analyses; 1.80A {Aquifex aeolicus}

Probab=99.79  E-value=1.9e-18  Score=142.17  Aligned_cols=109  Identities=20%  Similarity=0.248  Sum_probs=81.3

Q ss_pred             hcCCcccccEEEEEEEe--CCCCE--EEEEEeeC-CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeeeeec
Q 020742          100 FTSYKVRVPVTGAIILD--ETYER--CILVKGWK-GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEK  174 (322)
Q Consensus       100 ~~~y~~~v~v~g~Iv~~--~~~~k--vLLvrr~~-~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~~~~  174 (322)
                      |. |+....++++||++  ++ ++  +||++|.+ ++.|+||||+++.||++.+||+||++||||+++.....+..+...
T Consensus         3 ~~-y~~p~~~v~~vi~~~~~~-~~~~vLl~~r~~~~~~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~   80 (139)
T 2yyh_A            3 FN-VKTPLLATDVIIRLWDGE-NFKGIVLIERKYPPVGLALPGGFVEVGERVEEAAAREMREETGLEVRLHKLMGVYSDP   80 (139)
T ss_dssp             CC-CCCCEEEEEEEEEEEETT-EEEEEEEEEECSSSCSEECCEEECCTTCCHHHHHHHHHHHHHCCCCEEEEEEEEECCT
T ss_pred             cc-ccCCeEEEEEEEEEEcCC-CcEEEEEEEecCCCCcEECccccCCCCCCHHHHHHHHHHHHHCCCcccceEEEEECCC
Confidence            45 77777778888876  44 37  99999876 456999999999999999999999999999998765444443322


Q ss_pred             c---cCeEEEEEEEEEeecCCCCCCCCCccceeeEEEEeccccc
Q 020742          175 I---FGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQ  215 (322)
Q Consensus       175 ~---~~~~~~~~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~  215 (322)
                      .   ..+....+|.+.. .+.    +...+|+.++.|+++++++
T Consensus        81 ~~~~~~~~~~~~f~~~~-~~~----~~~~~e~~~~~W~~~~el~  119 (139)
T 2yyh_A           81 ERDPRAHVVSVVWIGDA-QGE----PKAGSDAKKVKVYRLEEIP  119 (139)
T ss_dssp             TSCTTSCEEEEEEEEEE-ESC----CCCCTTEEEEEEECTTSCC
T ss_pred             CcCCCceEEEEEEEEec-CCc----cCCCCCcceEEEEEHHHCC
Confidence            1   1234556666654 332    2346788999999999998

>2w4e_A MUTT/nudix family protein; ADP-ribose pyrophosphatase, hydrolase; 2.00A {Deinococcus radiodurans}

Probab=99.79  E-value=3.4e-19  Score=148.47  Aligned_cols=118  Identities=18%  Similarity=0.135  Sum_probs=81.4

Q ss_pred             cEEEEEEEeCCCCEEEEEEeeC----CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeeeee-cccCeEEEE
Q 020742          108 PVTGAIILDETYERCILVKGWK----GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIE-KIFGQQRVR  182 (322)
Q Consensus       108 ~v~g~Iv~~~~~~kvLLvrr~~----~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~~~-~~~~~~~~~  182 (322)
                      .++++++++.++ ++||+++++    .+.|+||||++++||++.+||+||++||||+++..+..+..+.. .......++
T Consensus         6 ~~v~vi~~~~~~-~vLLv~~~r~~~~~~~w~~PgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~   84 (145)
T 2w4e_A            6 RAVFILPVTAQG-EAVLIRQFRYPLRATITEIVAGGVEKGEDLGAAAARELLEEVGGAASEWVPLPGFYPQPSISGVVFY   84 (145)
T ss_dssp             EEEEEEEEETTS-EEEEEEEEETTTTEEEEECEEEECCTTCCHHHHHHHHHHHHHCEECSEEEECCCBBSCTTTCCCEEE
T ss_pred             CEEEEEEEcCCC-EEEEEEEEecCCCCCEEEeCCccCCCCCCHHHHHHHHHHHhhCCccCeEEEEecCcCCCCccCceEE
Confidence            467778887764 899998765    24899999999999999999999999999999887666555432 233345677


Q ss_pred             EEEEEeecCCCCCCCCCccceeeEEEEeccccccc--CCCcc-chhhhh
Q 020742          183 LYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA--SDDVI-SHGVTG  228 (322)
Q Consensus       183 ~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~--~~~~~-~~~~~~  228 (322)
                      +|++...... . ...+.+|+.++.|++++++.++  .+.+. +.++.+
T Consensus        85 ~f~~~~~~~~-~-~~~~~~E~~~~~w~~~~el~~~~~~~~~~~~~~~~a  131 (145)
T 2w4e_A           85 PLLALGVTLG-A-AQLEDTETIERVVLPLAEVYRMLEAGEIQDGPSSLT  131 (145)
T ss_dssp             EEEEEEEEEC----------CEEEEEEEHHHHHHHHHHTCCCBHHHHHH
T ss_pred             EEEEEecccC-C-CCCCCCCeEEEEEEeHHHHHHHHHcCCcCcHHHHHH
Confidence            7777644322 1 1235678899999999999874  33343 444443

>3gg6_A Nudix motif 18, nucleoside diphosphate-linked moiety X motif 18; NUDT18, NXR1, nucleotide hydrolase, hydrolase, structural genomics; 2.10A {Homo sapiens}

Probab=99.78  E-value=3.4e-18  Score=143.43  Aligned_cols=107  Identities=20%  Similarity=0.202  Sum_probs=80.3

Q ss_pred             cEEEEEEEeCCCCEEEEEEeeC---CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeeeeecccCeEEEEEE
Q 020742          108 PVTGAIILDETYERCILVKGWK---GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQQRVRLY  184 (322)
Q Consensus       108 ~v~g~Iv~~~~~~kvLLvrr~~---~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~~~~~~~~~~~~~y  184 (322)
                      .++++++++++ ++|||+++.+   .+.|+||||+++.||++.+||+||++||||+++.....+..+..  .......+|
T Consensus        21 ~~v~~~i~~~~-~~vLl~~r~~~~~~~~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~--~~~~~~~~f   97 (156)
T 3gg6_A           21 YVVLAVFLSEQ-DEVLLIQEAKRECRGSWYLPAGRMEPGETIVEALQREVKEEAGLHCEPETLLSVEER--GPSWVRFVF   97 (156)
T ss_dssp             EEEEEECBCTT-SEEEEEECCCTTSTTCEECSEEECCTTCCHHHHHHHHHHHHHCEEEEEEEEEEEEES--STTEEEEEE
T ss_pred             EEEEEEEEeCC-CEEEEEEecCCCCCCEEECCeeeccCCCCHHHHHHHHHHHhhCceeEeeeEEEEEcC--CCCEEEEEE
Confidence            45566667766 4999999987   68999999999999999999999999999999887655554432  223455566


Q ss_pred             EEEeecCCCCCCCCCccceeeEEEEeccccccc
Q 020742          185 IIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  217 (322)
Q Consensus       185 ~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~  217 (322)
                      .+....+.......+.+|+.++.|+++++++++
T Consensus        98 ~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~  130 (156)
T 3gg6_A           98 LARPTGGILKTSKEADAESLQAAWYPRTSLPTP  130 (156)
T ss_dssp             EEEEEEECCCCGGGCSSSCSEEEEEETTSCCSS
T ss_pred             EEEeeCCeeccCCCCCcceeeeEEEcHHHCccc
Confidence            665544432222234578999999999999874

>3grn_A MUTT related protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 1.70A {Methanosarcina mazei}

Probab=99.78  E-value=3.8e-18  Score=142.83  Aligned_cols=108  Identities=22%  Similarity=0.210  Sum_probs=80.7

Q ss_pred             ccccEEEEEEEeCCCCEEEEEEeeC-----CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeeeee-cccCe
Q 020742          105 VRVPVTGAIILDETYERCILVKGWK-----GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIE-KIFGQ  178 (322)
Q Consensus       105 ~~v~v~g~Iv~~~~~~kvLLvrr~~-----~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~~~-~~~~~  178 (322)
                      +...++++||++.+ ++|||++|..     +|.|.||||+++.||++.+||+||++||||+.+.....+..+.. .....
T Consensus         6 ~~~~~v~~vi~~~~-~~vLL~~r~~~~~~~~g~w~~PgG~ve~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~~~~~~   84 (153)
T 3grn_A            6 PYIISVYALIRNEK-GEFLLLRRSENSRTNAGKWDLPGGKVNPDESLKEGVAREVWEETGITMVPGDIAGQVNFELTEKK   84 (153)
T ss_dssp             CEEEEEEEEEECTT-CCEEEEEECTTCSSSTTCEECSEEECCTTCCHHHHHHHHHHHHHCCCCCCCSEEEEEEEECSSCE
T ss_pred             ceEEEEEEEEEcCC-CcEEEEEEcCCCCCCCCeEECceeecCCCCCHHHHHHhhhhhhhCcEeecceEEEEEEEecCCce
Confidence            34456677788766 4899999875     48999999999999999999999999999999886544444322 22334


Q ss_pred             EEEEEEEEEeecCCCCCCCCCccceeeEEEEeccccccc
Q 020742          179 QRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  217 (322)
Q Consensus       179 ~~~~~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~  217 (322)
                      ....+|.+....+.    +....|+.++.|++++++.++
T Consensus        85 ~~~~~~~~~~~~~~----~~~~~e~~~~~W~~~~el~~~  119 (153)
T 3grn_A           85 VIAIVFDGGYVVAD----VKLSYEHIEYSWVSLEKILGM  119 (153)
T ss_dssp             EEEEEEEEEECCCC----CCCCTTEEEEEEECHHHHTTC
T ss_pred             EEEEEEEEEecCCc----EecCCCcceEEEEEHHHhhhc
Confidence            45566666554443    223478899999999999884

>3fcm_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, 11180J, structural genomics; 2.20A {Clostridium perfringens atcc 13124}

Probab=99.76  E-value=1.1e-17  Score=146.47  Aligned_cols=132  Identities=17%  Similarity=0.320  Sum_probs=82.4

Q ss_pred             cccEEEEEEEeCCCCEEEEEEeeCCCcEEcccccCCCCCCHHHHHHHHHHHHhCCc-ccce----eeeeeeeecc-----
Q 020742          106 RVPVTGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFD-VSKL----LNKDEFIEKI-----  175 (322)
Q Consensus       106 ~v~v~g~Iv~~~~~~kvLLvrr~~~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~-v~~l----~~~~~~~~~~-----  175 (322)
                      ...+++++|++.++++|||+++...|.|.||||+++.||++.+||+||++||||++ +..+    ..+..+....     
T Consensus        44 ~h~~~~~vv~~~~~~~vLL~~r~~~g~w~lPgG~ve~gEs~~eaa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~  123 (197)
T 3fcm_A           44 AHLTSSAFAVNKERNKFLMIHHNIYNSWAWTGGHSDNEKDQLKVAIKELKEETGVKNPTPLLDKAFALDVLTVNGHIKRG  123 (197)
T ss_dssp             EEEEEEEEEECTTSCEEEEEEETTTTEEECEEEECTTCCBHHHHHHHHHHHHHCCSSCEESCSSCSEEEEEEECCEEETT
T ss_pred             ccEEEEEEEEECCCCEEEEEEecCCCCEECCccccCCCCCHHHHHHHHHHHHHCCCcccccCCCceEEEEeeecCccccC
Confidence            34567888888776699999988889999999999999999999999999999998 4321    1111111110     


Q ss_pred             ---cCe-EEEEEEEEEeecCCCCCCCCCccceeeEEEEecccccccCCCccchhhhhhhhhhhhhhHHHHHHHHHhcCC
Q 020742          176 ---FGQ-QRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPASDDVISHGVTGLKLYMVAPFLASLKKWISAHKP  250 (322)
Q Consensus       176 ---~~~-~~~~~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~~~~~~~~~~~~~~~~~v~pf~~~L~~wi~~~~~  250 (322)
                         ..+ +....|++. ....... ..+.+|+.++.|+++++++++....           ...+.+..+.++|.++..
T Consensus       124 ~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~E~~~~~W~~~~el~~~~~~~-----------~~~~il~~~~~~l~~~~~  189 (197)
T 3fcm_A          124 KYVSSHLHLNLTYLIE-CSEDETL-MLKEDENSGVMWIPFNEISKYCSEP-----------HMIPIYEKLINKLKTQSK  189 (197)
T ss_dssp             EEECCEEEEEEEEEEE-CCTTSCC-CCCC----CEEEEEGGGHHHHCCCG-----------GGHHHHHHHHHHHHC---
T ss_pred             cccCCceeEEEEEEEE-eCCCccc-CCCcccccceEEccHHHHHhhcCCH-----------HHHHHHHHHHHHHHhccc
Confidence               011 122344443 3332222 2346889999999999998753211           223566777777776543

>3o6z_A GDP-mannose pyrophosphatase NUDK; nudix, hydrolase, biofilm; 2.05A {Escherichia coli} SCOP: d.113.1.1 PDB: 3o52_A* 1viu_A 3o69_A 3o61_A

Probab=99.76  E-value=2.8e-18  Score=149.91  Aligned_cols=126  Identities=15%  Similarity=0.196  Sum_probs=90.7

Q ss_pred             cccEEEEEEEeCCCCEEEEEEeeC----------CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeeeee-c
Q 020742          106 RVPVTGAIILDETYERCILVKGWK----------GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIE-K  174 (322)
Q Consensus       106 ~v~v~g~Iv~~~~~~kvLLvrr~~----------~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~~~-~  174 (322)
                      +..++++++++.+.+++||+++++          .+.|+||||+++ ||++.+||+||++||||+++..+..+..+.. .
T Consensus        44 ~~~av~v~~~~~~~~~vlLv~~~r~~~~~~~~~~~~~w~lPgG~ve-gE~~~~aa~REl~EEtG~~~~~~~~l~~~~~~~  122 (191)
T 3o6z_A           44 RGNGATILLYNTKKKTVVLIRQFRVATWVNGNESGQLIESCAGLLD-NDEPEVCIRKEAIEETGYEVGEVRKLFELYMSP  122 (191)
T ss_dssp             CCCEEEEEEEETTTTEEEEEEEECHHHHTTTCTTCEEEECEEEECC-SSCHHHHHHHHHHHHC-CCCSCEEEEEEEESCT
T ss_pred             cCCEEEEEEEECCCCEEEEEEcCCccccccCCCCCeEEEecceEeC-CCCHHHHHHHHHHHHhCCccCcEEEEEEEEeCC
Confidence            446778888886546999999874          467999999999 9999999999999999999987777766543 3


Q ss_pred             ccCeEEEEEEEEEeecCCCC-CCCCCccceeeEEEEeccccccc--CCCcc-chhhhhhhhh
Q 020742          175 IFGQQRVRLYIIAGVRDDTA-FAPQTKKEISEIAWQRLDELQPA--SDDVI-SHGVTGLKLY  232 (322)
Q Consensus       175 ~~~~~~~~~y~~~~~~~~~~-~~~~~~~Ei~~~~Wv~ldeL~~~--~~~~~-~~~~~~~~~~  232 (322)
                      ......+++|++........ ......+|+.++.|++++++.++  .+++. ++++.++.++
T Consensus       123 ~~~~~~~~~f~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~g~i~d~~t~~al~~~  184 (191)
T 3o6z_A          123 GGVTELIHFFIAEYSDNQRANAGGGVEDEAIEVLELPFSQALEMIKTGEIRDGKTVLLLNYL  184 (191)
T ss_dssp             TTBCCEEEEEEEECCTTCC--------CCSSEEEEEEHHHHHHHHHHSSCCBHHHHHHHHHH
T ss_pred             CccCcEEEEEEEEEcccccccCCCCCCCcEEEEEEEEHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence            34556778888765432111 00112678899999999999884  55565 6666665444

>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}

Probab=99.76  E-value=7.9e-18  Score=146.59  Aligned_cols=108  Identities=20%  Similarity=0.120  Sum_probs=81.0

Q ss_pred             cCCcccccEEEEEEEeCCCCEEEEEEeeC---CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeeeeecccC
Q 020742          101 TSYKVRVPVTGAIILDETYERCILVKGWK---GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFG  177 (322)
Q Consensus       101 ~~y~~~v~v~g~Iv~~~~~~kvLLvrr~~---~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~~~~~~~  177 (322)
                      ..|.....++++|+.++  ++|||+++.+   .+.|.||||+++.||++.+||+||++||||+++.....+..+ .....
T Consensus        34 ~~~~~~~~~v~~ii~~~--~~vLL~~r~~~~~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~-~~~~~  110 (189)
T 3cng_A           34 IHYQNPKVIVGCIPEWE--NKVLLCKRAIAPYRGKWTLPAGFMENNETLVQGAARETLEEANARVEIRELYAVY-SLPHI  110 (189)
T ss_dssp             EECCCCEEEEEEEEEET--TEEEEEEESSSSSTTCEECSEEECCTTCCHHHHHHHHHHHHHCCCEEEEEEEEEE-EEGGG
T ss_pred             ccCCCCceEEEEEEEeC--CEEEEEEccCCCCCCeEECceeeccCCCCHHHHHHHHHHHHHCCccccceeEEEE-ecCCC
Confidence            44555566777788874  3999999976   689999999999999999999999999999998754333322 22233


Q ss_pred             eEEEEEEEEEeecCCCCCCCCCccceeeEEEEeccccc
Q 020742          178 QQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQ  215 (322)
Q Consensus       178 ~~~~~~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~  215 (322)
                      +....+|.+......    +...+|+.++.|+++++++
T Consensus       111 ~~~~~~f~~~~~~~~----~~~~~E~~~~~W~~~~el~  144 (189)
T 3cng_A          111 SQVYMLFRAKLLDLD----FFPGIESLEVRLFGEQEIP  144 (189)
T ss_dssp             TEEEEEEEEEECCSC----CCCCTTEEEEEEECTTTCC
T ss_pred             cEEEEEEEEEeCCCc----cCCCccceeEEEECHHHcC
Confidence            456667777554332    2236789999999999998

>1vhz_A ADP compounds hydrolase NUDE; structural genomics; HET: APR; 2.32A {Escherichia coli} SCOP: d.113.1.1 PDB: 1vhg_A*

Probab=99.75  E-value=8.2e-18  Score=147.93  Aligned_cols=119  Identities=15%  Similarity=0.202  Sum_probs=89.1

Q ss_pred             ccEEEEEEEeCCCCEEEEEEeeC----CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeeeee-cccCeEEE
Q 020742          107 VPVTGAIILDETYERCILVKGWK----GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIE-KIFGQQRV  181 (322)
Q Consensus       107 v~v~g~Iv~~~~~~kvLLvrr~~----~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~~~-~~~~~~~~  181 (322)
                      ..++++++++++  +|||+++++    .+.|+||||++++||++.+||+||++||||+++..+..+..+.. .......+
T Consensus        49 ~~av~vl~~~~~--~vLLvrq~r~~~~~~~welPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~  126 (198)
T 1vhz_A           49 REAVMIVPIVDD--HLILIREYAVGTESYELGFSKGLIDPGESVYEAANRELKEEVGFGANDLTFLKKLSMAPSYFSSKM  126 (198)
T ss_dssp             CCEEEEEEEETT--EEEEEEEEETTTTEEEEECEEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEECCTTTCCCEE
T ss_pred             CCEEEEEEEECC--EEEEEEcccCCCCCcEEEeCcccCCCCcCHHHHHHHHHHHHHCCCcCceEEEEEEeCCCCccCcEE
Confidence            356667767775  899999876    35899999999999999999999999999999987766665532 33445667


Q ss_pred             EEEEEEeecCCCCCCCCCccceeeEEEEeccccccc--CCCcc-chhhhhh
Q 020742          182 RLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA--SDDVI-SHGVTGL  229 (322)
Q Consensus       182 ~~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~--~~~~~-~~~~~~~  229 (322)
                      ++|++.......  ...++.|..++.|+++++++++  .+++. ++++.++
T Consensus       127 ~~f~a~~~~~~~--~~~~~~E~~~~~w~~~~el~~~~~~~~i~~~~~~~al  175 (198)
T 1vhz_A          127 NIVVAQDLYPES--LEGDEPEPLPQVRWPLAHMMDLLEDPDFNEARNVSAL  175 (198)
T ss_dssp             EEEEEEEEEECC--CCCCCSSCCCEEEEEGGGGGGGGGCTTTCBHHHHHHH
T ss_pred             EEEEEEeCCccc--CCCCCCceEEEEEEEHHHHHHHHHcCCCCCHHHHHHH
Confidence            788876554321  1235678889999999999985  34444 5566554

>1g0s_A Hypothetical 23.7 kDa protein in ICC-TOLC intergenic region; nudix fold, hydrolase; 1.90A {Escherichia coli} SCOP: d.113.1.1 PDB: 1g9q_A* 1ga7_A 1khz_A* 1viq_A

Probab=99.75  E-value=6e-18  Score=150.05  Aligned_cols=126  Identities=13%  Similarity=0.069  Sum_probs=90.7

Q ss_pred             ccEEEEEEEeCCCCEEEEEEeeC---------CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeeeee-ccc
Q 020742          107 VPVTGAIILDETYERCILVKGWK---------GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIE-KIF  176 (322)
Q Consensus       107 v~v~g~Iv~~~~~~kvLLvrr~~---------~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~~~-~~~  176 (322)
                      ..++++++++++.++|||+++++         .+.|+||||++++||++.+||+||++||||+.+..+..+..+.. +..
T Consensus        57 ~~av~vl~~~~~~~~vLLvrq~R~~~~~~~~~~~~welPgG~ve~gE~~~~aA~REl~EEtGl~~~~~~~l~~~~~~~g~  136 (209)
T 1g0s_A           57 GHAAVLLPFDPVRDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGESVEDVARREAIEEAGLIVKRTKPVLSFLASPGG  136 (209)
T ss_dssp             CCEEEEEEEETTTTEEEEEEEECGGGGGGSSCSEEEECEEEECCTTCCHHHHHHHHHHHHHCCCCCCEEEEEEEESCTTT
T ss_pred             CCEEEEEEEECCCCEEEEEEeecccCCCCCCCCeEEEeCcccCCCCcCHHHHHHHHHHHHcCcccCcEEEeEEEecCCCc
Confidence            45777888884445999999876         15799999999999999999999999999999988777766543 344


Q ss_pred             CeEEEEEEEEEeecCC-CC-CCCCCccceeeEEEEeccccccc--CCCcc-chhhhhhhhh
Q 020742          177 GQQRVRLYIIAGVRDD-TA-FAPQTKKEISEIAWQRLDELQPA--SDDVI-SHGVTGLKLY  232 (322)
Q Consensus       177 ~~~~~~~y~~~~~~~~-~~-~~~~~~~Ei~~~~Wv~ldeL~~~--~~~~~-~~~~~~~~~~  232 (322)
                      ....+++|++...... .. ....+++|..++.|++++++.++  .+++. ++++.++.++
T Consensus       137 ~~~~~~~f~a~~~~~~~~~~~~~~~e~E~~~~~w~~~~el~~~i~~g~i~d~~t~~al~~~  197 (209)
T 1g0s_A          137 TSERSSIMVGEVDATTASGIHGLADENEDIRVHVVSREQAYQWVEEGKIDNAASVIALQWL  197 (209)
T ss_dssp             BCCEEEEEEEECCGGGCC--------CCSCEEEEEEHHHHHHHHHTTSSCBHHHHHHHHHH
T ss_pred             cCcEEEEEEEEEccccccCCCCCCCCCcEEEEEEEEHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence            4567788887642211 11 11235678889999999999884  55665 6777776444

>3f6a_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.02A {Clostridium perfringens atcc 13124}

Probab=99.75  E-value=8.7e-18  Score=141.63  Aligned_cols=108  Identities=19%  Similarity=0.184  Sum_probs=77.8

Q ss_pred             cccEEEEEEEeCCCCEEEEEEeeCCCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeee-------------e
Q 020742          106 RVPVTGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEF-------------I  172 (322)
Q Consensus       106 ~v~v~g~Iv~~~~~~kvLLvrr~~~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~-------------~  172 (322)
                      +..++++||+++  ++|||++|.+.|.|.||||+++.||++.+||+||++||||+++.....+..+             .
T Consensus         5 ~~~~v~~vi~~~--~~vLL~~r~~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~   82 (159)
T 3f6a_A            5 RHFTVSVFIVCK--DKVLLHLHKKAKKMLPLGGHIEVNELPEEACIREAKEEAGLNVTLYNPIDINLKKSCDLSGEKLLI   82 (159)
T ss_dssp             SCEEEEEEEEET--TEEEEEECSSSCCEECEEEECCTTCCHHHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHTTCEEEC
T ss_pred             ceEEEEEEEEEC--CEEEEEEcCCCCeEECCccCccCCCCHHHHHHHHHHHHhCCCceeccccccccccccccccccccc
Confidence            345677888874  3999999988899999999999999999999999999999998764433211             0


Q ss_pred             e--------c-ccCeEEEEEEEEEeecCCCCCCCCCccceeeEEEEecccccccC
Q 020742          173 E--------K-IFGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPAS  218 (322)
Q Consensus       173 ~--------~-~~~~~~~~~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~~  218 (322)
                      .        . ........+|.+....+.  ..+ +.+|+.++.|++++++.++.
T Consensus        83 ~p~~~~~~~~~~~~~~~~~~f~~~~~~~~--~~~-~~~E~~~~~W~~~~el~~~~  134 (159)
T 3f6a_A           83 NPIHTILGDVSPNHSHIDFVYYATTTSFE--TSP-EIGESKILKWYSKEDLKNAH  134 (159)
T ss_dssp             CCSEEEEECSSSSSCEEEEEEEEECSCSC--CCC-CTTSCCCEEEECSSSSTTCS
T ss_pred             CccccccccCCCCceEEEEEEEEEeCCCC--cCC-CCCcccceEEeeHHHHhhCc
Confidence            0        0 011233345655443332  122 46889999999999998853

>4dyw_A MUTT/nudix family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.50A {Burkholderia pseudomallei}

Probab=99.75  E-value=1.7e-17  Score=140.02  Aligned_cols=107  Identities=20%  Similarity=0.270  Sum_probs=78.2

Q ss_pred             cccEEEEEEEeCCCCEEEEEEeeC---CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeeeeec---ccCeE
Q 020742          106 RVPVTGAIILDETYERCILVKGWK---GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEK---IFGQQ  179 (322)
Q Consensus       106 ~v~v~g~Iv~~~~~~kvLLvrr~~---~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~~~~---~~~~~  179 (322)
                      ...++++||+++  ++|||++|.+   .+.|.||||+++.||++.+||+||++||||+++.....+..+...   .....
T Consensus        28 ~~~~v~~vi~~~--~~vLL~~r~~~~~~~~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~  105 (157)
T 4dyw_A           28 PRVGCGAAIVRD--GRILLIKRKRAPEAGCWGLPGGKVDWLEPVERAVCREIEEELGIALERATLLCVVDHIDAANGEHW  105 (157)
T ss_dssp             CEEEEEEEEEET--TEEEEEEECSSSSTTCEECCEEECCTTCCHHHHHHHHHHHHHSCEEESCEEEEEEEEEETTTTEEE
T ss_pred             ceeEEEEEEEEC--CEEEEEEecCCCCCCEEECCcccCCCCCCHHHHHHHHHHHHHCcccccCcEEEEEEeeccCCCcEE
Confidence            344567777774  4999999985   689999999999999999999999999999998765544433221   12233


Q ss_pred             EEEEEEEEeecCCCCCCCCCccceeeEEEEecccccc
Q 020742          180 RVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQP  216 (322)
Q Consensus       180 ~~~~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~  216 (322)
                      ...+|.+....+..  ...+.+|+.++.|++++++.+
T Consensus       106 ~~~~f~~~~~~~~~--~~~~~~E~~~~~W~~~~el~~  140 (157)
T 4dyw_A          106 VAPVYLAHAFSGEP--RVVEPDRHEALGWFALDDLPQ  140 (157)
T ss_dssp             EEEEEEESEEESCC--CCSCTTTEEEEEEEETTSCCS
T ss_pred             EEEEEEEEEcCCCc--ccCCCCcEeEEEEECHHHccc
Confidence            44556654444332  233457899999999999987

>3h95_A Nucleoside diphosphate-linked moiety X motif 6; NUDT6, nudix, hydrolase, GFG, GFG-1, FGF2AS, structural GENO structural genomics consortium, SGC; HET: FLC; 1.70A {Homo sapiens}

Probab=99.75  E-value=1.1e-17  Score=146.77  Aligned_cols=114  Identities=20%  Similarity=0.279  Sum_probs=73.6

Q ss_pred             CcccccEEEEEEEeCCCCEEEEEEeeC--CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeee--eecccCe
Q 020742          103 YKVRVPVTGAIILDETYERCILVKGWK--GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEF--IEKIFGQ  178 (322)
Q Consensus       103 y~~~v~v~g~Iv~~~~~~kvLLvrr~~--~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~--~~~~~~~  178 (322)
                      +.+....++++++++++++|||+++..  .|.|.||||+++.||++.+||+||++||||+++.....+...  .......
T Consensus        22 ~~~~~v~v~~~v~~~~~~~vLL~~r~~~~~g~w~lPGG~ve~gEs~~~aA~REl~EEtGl~~~~~~l~~~~~~~~~~~~~  101 (199)
T 3h95_A           22 SMSHQVGVAGAVFDESTRKILVVQDRNKLKNMWKFPGGLSEPEEDIGDTAVREVFEETGIKSEFRSVLSIRQQHTNPGAF  101 (199)
T ss_dssp             ----CCEEEEEEEETTTTEEEEEEESSSSTTSBBCCEEECCTTCCHHHHHHHHHHHHHCCCEEEEEEEEEEECC------
T ss_pred             cCcccceEEEEEEeCCCCEEEEEEEcCCCCCCEECCccccCCCCCHHHHHHHHHHHHhCCccccceEEEEEeeecCCCCc
Confidence            334344555666665545999999876  799999999999999999999999999999998753333211  1111112


Q ss_pred             EEEEEEEEEeec-CCCCCCCCCccceeeEEEEeccccccc
Q 020742          179 QRVRLYIIAGVR-DDTAFAPQTKKEISEIAWQRLDELQPA  217 (322)
Q Consensus       179 ~~~~~y~~~~~~-~~~~~~~~~~~Ei~~~~Wv~ldeL~~~  217 (322)
                      ....+|+++.+. ..... ..+.+|+.++.|+++++++++
T Consensus       102 ~~~~~~~~~~~~~~~~~~-~~~~~E~~~~~W~~~~el~~~  140 (199)
T 3h95_A          102 GKSDMYIICRLKPYSFTI-NFCQEECLRCEWMDLNDLAKT  140 (199)
T ss_dssp             ---CEEEEEEEEESCCCC-CCCTTTEEEEEEEEHHHHHHC
T ss_pred             eeEEEEEEEEEcCCCccc-CCCccceeeeEEEeHHHHhhh
Confidence            233334444433 22222 234689999999999999875

>3gwy_A Putative CTP pyrophosphohydrolase; structural genomics, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.00A {Bacteroides fragilis} SCOP: d.113.1.0

Probab=99.75  E-value=1.4e-17  Score=137.32  Aligned_cols=106  Identities=18%  Similarity=0.158  Sum_probs=78.3

Q ss_pred             ccccEEEEEEEeCCCCEEEEEEeeC------CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeeeee-cccC
Q 020742          105 VRVPVTGAIILDETYERCILVKGWK------GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIE-KIFG  177 (322)
Q Consensus       105 ~~v~v~g~Iv~~~~~~kvLLvrr~~------~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~~~-~~~~  177 (322)
                      +.+.++++||.++  ++|||++|..      .|.|.||||+++.||++.+||+||++||||+++.....+..+.. ....
T Consensus         4 ~~~~~v~~vi~~~--~~vLL~~r~~~~~~~~~g~w~lPgG~ve~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~~~~~   81 (140)
T 3gwy_A            4 KSIEVVAAVIRLG--EKYLCVQRGQTKFSYTSFRYEFPGGKVEEGESLQEALQREIMEEMDYVIEVGEKLLTVHHTYPDF   81 (140)
T ss_dssp             SCEEEEEEEEEET--TEEEEEEC---------CCEECSEEECCTTCCHHHHHHHHHHHHHCCCEEEEEEEEEEECCCSSC
T ss_pred             eEEEEEEEEEEeC--CEEEEEEecCCCCCCCCCeEECCCccCCCCCCHHHHHHHHHHHhhCcEEEeceEEEEEEEEeCCc
Confidence            3466778888874  4999999874      37899999999999999999999999999999887655544322 2233


Q ss_pred             eEEEEEEEEEeecCCCCCCCCCccceeeEEEEeccccccc
Q 020742          178 QQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  217 (322)
Q Consensus       178 ~~~~~~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~  217 (322)
                      ...+.+|.+....+.    + ...|+.++.|++++++.++
T Consensus        82 ~~~~~~f~~~~~~~~----~-~~~E~~~~~W~~~~el~~~  116 (140)
T 3gwy_A           82 EITMHAFLCHPVGQR----Y-VLKEHIAAQWLSTREMAIL  116 (140)
T ss_dssp             CEEEEEEEEEECCSC----C-CCCSSCEEEEECHHHHTTS
T ss_pred             eEEEEEEEEEecCCc----c-cccccceeEeccHHHHhhC
Confidence            455666766544332    2 2468889999999999874

>2yvp_A NDX2, MUTT/nudix family protein; nudix protein, ADP-ribose, FAD, hydrol structural genomics, NPPSFA; HET: RBY; 1.66A {Thermus thermophilus} PDB: 2yvn_A 2yvm_A* 2yvo_A*

Probab=99.75  E-value=5e-18  Score=146.38  Aligned_cols=120  Identities=20%  Similarity=0.232  Sum_probs=86.8

Q ss_pred             ccEEEEEEEeCCCCEEEEEEeeC----CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeeeee-cccCeEEE
Q 020742          107 VPVTGAIILDETYERCILVKGWK----GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIE-KIFGQQRV  181 (322)
Q Consensus       107 v~v~g~Iv~~~~~~kvLLvrr~~----~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~~~-~~~~~~~~  181 (322)
                      ..++++++++.++ +|||+++.+    .+.|+||||+++.||++.+||+||++||||+++..+..+..+.. ....+..+
T Consensus        41 ~~~v~v~i~~~~~-~vLL~~r~~~~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~  119 (182)
T 2yvp_A           41 VAASFVLPVTERG-TALLVRQYRHPTGKFLLEVPAGKVDEGETPEAAARRELREEVGAEAETLIPLPSFHPQPSFTAVVF  119 (182)
T ss_dssp             CEEEEEEEBCTTS-EEEEEEEEEGGGTEEEEECCEEECCTTCCHHHHHHHHHHHHHCEECSCEEECCCBCSCTTTBCCEE
T ss_pred             CCEEEEEEEcCCC-EEEEEEeccCCCCCcEEEeccccCCCCcCHHHHHHHHHHHHhCCCcccEEEEEEEeCCCCccccEE
Confidence            3466777777764 999999875    57999999999999999999999999999999887666555432 23334567


Q ss_pred             EEEEEEeecCCCCCCCCCccceeeEEEEeccccccc--CCCcc-chhhhh
Q 020742          182 RLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA--SDDVI-SHGVTG  228 (322)
Q Consensus       182 ~~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~--~~~~~-~~~~~~  228 (322)
                      ++|++........ ...+.+|+.++.|++++++.++  .+++. +.++.+
T Consensus       120 ~~f~~~~~~~~~~-~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~~~~~a  168 (182)
T 2yvp_A          120 HPFLALKARVVTP-PTLEEGELLESLELPLTEVYALLAKGEIQDASTALT  168 (182)
T ss_dssp             EEEEECSCEECSC-CCCCTTCCEEEEEEEHHHHHHHHHTTCCCCHHHHHH
T ss_pred             EEEEEeccccCCC-CCCCCCceEEEEEEEHHHHHHHHHcCCcCChHHHHH
Confidence            7777754332222 1235688999999999999884  44443 444443

>3shd_A Phosphatase NUDJ; nudix fold, nudix motif, hydrolase, (D)NDP/(D)NTP binding, dephosphorylation; 2.50A {Escherichia coli} PDB: 3dku_A

Probab=99.74  E-value=2.1e-17  Score=137.97  Aligned_cols=125  Identities=20%  Similarity=0.234  Sum_probs=83.5

Q ss_pred             EEEEEEeCCCCEEEEEEeeC--CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeee--eecccCeEEEEEEE
Q 020742          110 TGAIILDETYERCILVKGWK--GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEF--IEKIFGQQRVRLYI  185 (322)
Q Consensus       110 ~g~Iv~~~~~~kvLLvrr~~--~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~--~~~~~~~~~~~~y~  185 (322)
                      +++|+.++  ++|||++|..  .+.|.||||+++.||++.+||+||++||||+++.....+..+  ...........+|.
T Consensus         8 v~~ii~~~--~~vLl~~r~~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~f~   85 (153)
T 3shd_A            8 VACVVHAE--GKFLVVEETINGKALWNQPAGHLEADETLVEAAARELWEETGISAQPQHFIRMHQWIAPDKTPFLRFLFA   85 (153)
T ss_dssp             EEEEEEET--TEEEEEEEEETTEEEEECSEEECCTTCCHHHHHHHHHHHHHCCCCCCCEEEEEEEECCTTSCCEEEEEEE
T ss_pred             EEEEEEeC--CEEEEEEecCCCCCCEECCeEEeCCCCCHHHHHHHHHHHHHCcccccCcEEEEEEEecCCCceEEEEEEE
Confidence            34555554  3999999864  678999999999999999999999999999998865444433  22333334445565


Q ss_pred             EEeecCCCCCCCCCccceeeEEEEecccccccCCCccchhhhhhhhhhhhh-hHHHHHHHHHhcCCC
Q 020742          186 IAGVRDDTAFAPQTKKEISEIAWQRLDELQPASDDVISHGVTGLKLYMVAP-FLASLKKWISAHKPS  251 (322)
Q Consensus       186 ~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~~~~~~~~~~~~~~~~~v~p-f~~~L~~wi~~~~~~  251 (322)
                      +..... ... .....|+.++.|++++++.....             ...| ....+.+|+..+..+
T Consensus        86 ~~~~~~-~~~-~~~~~E~~~~~W~~~~el~~~~~-------------~~~~~~~~~l~~~~~~~~~~  137 (153)
T 3shd_A           86 IELEQI-CPT-QPHDSDIDCCRWVSAEEILQASN-------------LRSPLVAESIRCYQSGQRYP  137 (153)
T ss_dssp             EECSSC-CCC-CCCSTTCCEEEEECHHHHHTCSC-------------BSSTHHHHHHHHHHHTCCBC
T ss_pred             EEcccc-CcC-CCCcccceeeEEecHHHhhcccc-------------ccCchHHHHHHHHHhCCccc
Confidence            543332 222 23467899999999999932111             0112 235677788766544

>1vcd_A NDX1; nudix protein, diadenosine polyphosphate, AP6A, thermus THER HB8, hydrolase, riken structural genomics/proteomics initia RSGI; 1.70A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1vc8_A 1vc9_A*

Probab=99.74  E-value=2.3e-17  Score=132.97  Aligned_cols=102  Identities=22%  Similarity=0.372  Sum_probs=77.5

Q ss_pred             EEEEEEEeCCCCEEEEEEeeCCCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeeeee-cccCeEEEEEEEEE
Q 020742          109 VTGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIE-KIFGQQRVRLYIIA  187 (322)
Q Consensus       109 v~g~Iv~~~~~~kvLLvrr~~~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~~~-~~~~~~~~~~y~~~  187 (322)
                      +++++++++++ +|||++|.. |.|.||||+++.||++.+||+||++||||+.+.....+..+.. .......+.+|.+.
T Consensus         4 ~~~~vi~~~~~-~vLl~~r~~-g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (126)
T 1vcd_A            4 GAGGVVFNAKR-EVLLLRDRM-GFWVFPKGHPEPGESLEEAAVREVWEETGVRAEVLLPLYPTRYVNPKGVEREVHWFLM   81 (126)
T ss_dssp             EEEEEEECTTS-CEEEEECTT-SCEECCEECCCTTCCHHHHHHHHHHHHHCCEEEEEEEEEEEEEECTTSCEEEEEEEEE
T ss_pred             EEEEEEEcCCC-EEEEEEECC-CCccCCcCcCCCCCCHHHHHHHHHHHhhCcEeeeccEEeEEEEecCCceEEEEEEEEE
Confidence            56777887764 899999876 8999999999999999999999999999999886554444321 12233456667665


Q ss_pred             eecCCCCCCCCCccceeeEEEEecccccc
Q 020742          188 GVRDDTAFAPQTKKEISEIAWQRLDELQP  216 (322)
Q Consensus       188 ~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~  216 (322)
                      ...+.    +....|+.++.|++++++.+
T Consensus        82 ~~~~~----~~~~~e~~~~~w~~~~el~~  106 (126)
T 1vcd_A           82 RGEGA----PRLEEGMTGAGWFSPEEARA  106 (126)
T ss_dssp             EEESC----CCCCTTCCEEEEECHHHHHH
T ss_pred             EcCCC----CCCCcceeeeEEcCHHHHHH
Confidence            44433    23457889999999999987

>3q91_A Uridine diphosphate glucose pyrophosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 2.70A {Homo sapiens}

Probab=99.74  E-value=1.1e-17  Score=149.68  Aligned_cols=137  Identities=14%  Similarity=0.179  Sum_probs=83.8

Q ss_pred             hHHHHHHHHhCCCCcccccccchhHHHhhhcCCcccccEEEEEEEeCCCCEEEEEEeeC---------------------
Q 020742           71 TLKEFTSLMFNSCDVLRPYVAHIDDIFKDFTSYKVRVPVTGAIILDETYERCILVKGWK---------------------  129 (322)
Q Consensus        71 ~l~~f~~~l~~~~~~l~~~~~~~~~~~~~~~~y~~~v~v~g~Iv~~~~~~kvLLvrr~~---------------------  129 (322)
                      ++.......++|....+.+..              +..+|++++++.+.+++|||++++                     
T Consensus        14 ~~~~~~~~~~~G~~~~~e~v~--------------~~~aV~vl~~~~~~~~vlLvrQ~R~~~~~~~~~~~~~~~~~~~~~   79 (218)
T 3q91_A           14 GTENLYFQSMNGAQKSWDFMK--------------THDSVTVLLFNSSRRSLVLVKQFRPAVYAGEVERRFPGSLAAVDQ   79 (218)
T ss_dssp             -----------------------------------CCCEEEEEEEEGGGTEEEEEEEECHHHHHHHTC------------
T ss_pred             ceeEEEEECCCCCEEEEEEEE--------------cCCeEEEEEEECCCCEEEEEEcccccccccccccccccccccccc
Confidence            344455556666654443332              357888888885546999999876                     


Q ss_pred             --------------CCcEEcccccCCC-CCCHHHHHHHHHHHHhCCcc--cceeeeeeeee-cccCeEEEEEEEEEeecC
Q 020742          130 --------------GSSWSFPRGKKNK-DEEDHACAIREVQEETGFDV--SKLLNKDEFIE-KIFGQQRVRLYIIAGVRD  191 (322)
Q Consensus       130 --------------~~~w~fPgG~ie~-gEs~~eaA~REv~EETGl~v--~~l~~~~~~~~-~~~~~~~~~~y~~~~~~~  191 (322)
                                    ++.|+||||+++. ||++.+||+||++||||+.+  ..+..+..+.. .......+++|++.....
T Consensus        80 ~~~~~~~~~~~~~~~~~welPgG~ve~~gEs~~eaA~REl~EEtGl~~~~~~l~~l~~~~~~~g~~~~~~~~f~a~~~~~  159 (218)
T 3q91_A           80 DGPRELQPALPGSAGVTVELCAGLVDQPGLSLEEVACKEAWEECGYHLAPSDLRRVATYWSGVGLTGSRQTMFYTEVTDA  159 (218)
T ss_dssp             -------------CCEEEECEEEECCSSSCCHHHHHHHHHHHHHCBCCCGGGCEEEEEEEEC---CCEEEEEEEEEECGG
T ss_pred             ccccccccccccCCCeEEECCcceeCCCCCCHHHHHHHHHHHHhCCccccCceEEEEEEecCCCccceEEEEEEEEECCc
Confidence                          3689999999999 99999999999999999998  66777766543 445667788888764422


Q ss_pred             C---CCCCCCCccceeeEEEEeccccccc--CCCc
Q 020742          192 D---TAFAPQTKKEISEIAWQRLDELQPA--SDDV  221 (322)
Q Consensus       192 ~---~~~~~~~~~Ei~~~~Wv~ldeL~~~--~~~~  221 (322)
                      .   ......+++|+.++.|++++++.++  .+++
T Consensus       160 ~~~~~~~~~~d~~E~~ev~wv~l~el~~~i~~g~i  194 (218)
T 3q91_A          160 QRSGPGGGLVEEGELIEVVHLPLEGAQAFADDPDI  194 (218)
T ss_dssp             GBCC---------CCEEEEEEEGGGHHHHHHCTTS
T ss_pred             ccccCCCCCCCCCcEEEEEEEEHHHHHHHHHcCCC
Confidence            1   0011234678999999999999884  4444

>3id9_A MUTT/nudix family protein; hydrolase, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.55A {Bacillus thuringiensis str}

Probab=99.74  E-value=1.5e-17  Score=141.79  Aligned_cols=107  Identities=20%  Similarity=0.298  Sum_probs=72.6

Q ss_pred             EEEEEEEeCCCCEEEEEEeeC-CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeeeeecccC-eEEEEEEEE
Q 020742          109 VTGAIILDETYERCILVKGWK-GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFG-QQRVRLYII  186 (322)
Q Consensus       109 v~g~Iv~~~~~~kvLLvrr~~-~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~~~~~~~-~~~~~~y~~  186 (322)
                      .+++||.++  ++|||++|.+ .+.|+||||+++.||++.+||+||++||||+++.....+..+...... .....+|.+
T Consensus        25 ~v~~ii~~~--~~vLL~~r~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (171)
T 3id9_A           25 RVTGILIED--EKVLLVKQKVANRDWSLPGGRVENGETLEEAMIREMREETGLEVKIKKLLYVCDKPDASPSLLHITFLL  102 (171)
T ss_dssp             EEEEEEEET--TEEEEEECSSTTCCEECCEEECCTTCCHHHHHHHHHHHHHCCCEEEEEEEEEEEETTSSSCEEEEEEEE
T ss_pred             EEEEEEEEC--CEEEEEEEECCCCeEECCCccCCCCCCHHHHHHHHHHHHHCCccccceEEEEEcccCCCCcEEEEEEEE
Confidence            445666665  3999999987 799999999999999999999999999999998754444433332222 233334545


Q ss_pred             EeecCCCCCC--CCCccceeeEEEEeccccccc
Q 020742          187 AGVRDDTAFA--PQTKKEISEIAWQRLDELQPA  217 (322)
Q Consensus       187 ~~~~~~~~~~--~~~~~Ei~~~~Wv~ldeL~~~  217 (322)
                      ....+.....  ..+.+|+.++.|++++++.++
T Consensus       103 ~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~  135 (171)
T 3id9_A          103 ERIEGEITLPSNEFDHNPIHDVQMVPINELSYY  135 (171)
T ss_dssp             EEC-------------CCCCCEEEEETGGGGGG
T ss_pred             EEcCCcccCCccCCCcCeeeeEEEEeHHHHhhC
Confidence            4333321110  124578899999999999874

>1sjy_A MUTT/nudix family protein; nudix fold, alpha-beta-alpha sandwich, structural genomics, BSGC structure funded by NIH; 1.39A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1soi_A 1su2_A* 1sz3_A*

Probab=99.74  E-value=4e-17  Score=136.83  Aligned_cols=110  Identities=20%  Similarity=0.326  Sum_probs=80.8

Q ss_pred             cccEEEEEEEeCCCCEEEEEEeeC-------CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeeeee-ccc-
Q 020742          106 RVPVTGAIILDETYERCILVKGWK-------GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIE-KIF-  176 (322)
Q Consensus       106 ~v~v~g~Iv~~~~~~kvLLvrr~~-------~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~~~-~~~-  176 (322)
                      ...+++++|++.+ ++|||++|.+       .|.|+||||+++.||++.+||+||++||||+.+..+..+..+.. ... 
T Consensus        12 ~~~~~~~vi~~~~-~~vLl~~r~~~~~~~~~~~~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~l~~~~~~~~~~   90 (159)
T 1sjy_A           12 ELRAAGVVLLNER-GDILLVQEKGIPGHPEKAGLWHIPSGAVEDGENPQDAAVREACEETGLRVRPVKFLGAYLGRFPDG   90 (159)
T ss_dssp             CEEEEEEEEBCTT-CCEEEEEESCC----CCCCCEECSEEECCTTSCHHHHHHHHHHHHHSCCEEEEEEEEEEEEECTTS
T ss_pred             EEEeEEEEEEeCC-CCEEEEEecccCcCCCCCCeEECCccccCCCCCHHHHHHHHHHHHHCccceeeEEEEEEecccCCC
Confidence            3456777777765 4899999973       58999999999999999999999999999999887555544322 122 


Q ss_pred             CeEEEEEEEEEeecCCCCCCCCCccceeeEEEEeccccccc
Q 020742          177 GQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  217 (322)
Q Consensus       177 ~~~~~~~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~  217 (322)
                      ....+.+|.+....+. ...+.+.+|+.++.|++++++.++
T Consensus        91 ~~~~~~~f~~~~~~~~-~~~~~~~~E~~~~~W~~~~el~~~  130 (159)
T 1sjy_A           91 VLILRHVWLAEPEPGQ-TLAPAFTDEIAEASFVSREDFAQL  130 (159)
T ss_dssp             CEEEEEEEEEEECSSC-CCCCCCCSSEEEEEEECHHHHHHH
T ss_pred             ceEEEEEEEEEccCCC-ccccCCCCceeEEEEecHHHHHHh
Confidence            3455666666543332 122324688999999999999874

>1ktg_A Diadenosine tetraphosphate hydrolase; nudix, AMP, magnesium cluster; HET: AMP; 1.80A {Caenorhabditis elegans} SCOP: d.113.1.1 PDB: 1kt9_A*

Probab=99.74  E-value=3.6e-17  Score=133.89  Aligned_cols=108  Identities=20%  Similarity=0.328  Sum_probs=75.2

Q ss_pred             ccEEEEEEEeCC--CCEEEEEEeeC-CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeee----eeee-ecccCe
Q 020742          107 VPVTGAIILDET--YERCILVKGWK-GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNK----DEFI-EKIFGQ  178 (322)
Q Consensus       107 v~v~g~Iv~~~~--~~kvLLvrr~~-~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~----~~~~-~~~~~~  178 (322)
                      +.++++|+++++  .++|||+++.. .+.|.||||+++.||++.+||+||++||||+.+..+...    ..+. .....+
T Consensus         3 ~~~~~~vi~~~~~~~~~vLl~~r~~~~~~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~   82 (138)
T 1ktg_A            3 VKAAGLVIYRKLAGKIEFLLLQASYPPHHWTPPKGHVDPGEDEWQAAIRETKEEANITKEQLTIHEDCHETLFYEAKGKP   82 (138)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEEESSTTCCEESSEEECCTTCCHHHHHHHHHHHHHCCCGGGEEEEEEEEEEEEEEETTEE
T ss_pred             eEEEEEEEEEecCCCcEEEEEEccCCCCcEeCCccccCCCCCHHHHHHHHHHHHHCCCccceEEeccccceEEEEeCCCc
Confidence            345677777642  24899999864 579999999999999999999999999999976553322    1111 111223


Q ss_pred             EEEEEEEEEeecCCCCCCCCCccceeeEEEEeccccccc
Q 020742          179 QRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  217 (322)
Q Consensus       179 ~~~~~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~  217 (322)
                      ..+.+|.+......   .....+|+.++.|++++++.++
T Consensus        83 ~~~~~f~~~~~~~~---~~~~~~e~~~~~W~~~~el~~~  118 (138)
T 1ktg_A           83 KSVKYWLAKLNNPD---DVQLSHEHQNWKWCELEDAIKI  118 (138)
T ss_dssp             EEEEEEEEEECSCC---CCCCCTTEEEEEEECHHHHHHH
T ss_pred             eEEEEEEEEecCCc---ccCCCchhcEeEeccHHHHHHh
Confidence            44556655443322   2334678999999999999873

>3son_A Hypothetical nudix hydrolase; structural genomics, joint center for structural GENO JCSG, protein structure initiative, PSI-biology; HET: MSE; 1.71A {Listeria monocytogenes}

Probab=99.73  E-value=3.2e-17  Score=136.42  Aligned_cols=116  Identities=16%  Similarity=0.101  Sum_probs=78.3

Q ss_pred             CEEEEEEeeCCCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccce-eeeee---eee-----cccCeEEEEEEEEEeec
Q 020742          120 ERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKL-LNKDE---FIE-----KIFGQQRVRLYIIAGVR  190 (322)
Q Consensus       120 ~kvLLvrr~~~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l-~~~~~---~~~-----~~~~~~~~~~y~~~~~~  190 (322)
                      ++|||++|...|.|.||||+++.||++.+||+||++||||+++... ..+..   +..     ........++|.+....
T Consensus        20 ~~vLl~~r~~~g~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~   99 (149)
T 3son_A           20 YQFGVLHRTDADVWQFVAGGGEDEEAISETAKRESIEELNLDVDVKMYSLDSHASIPNFHFSFNKPYVVPEYCFAIDLTS   99 (149)
T ss_dssp             EEEEEEEESSSSCEECEEEECCTTCCHHHHHHHHHHHHHTCCSCCCEEEEEEEEEEEGGGTCSSSCSEEEEEEEEEECTT
T ss_pred             eEEEEEEEcCCCCEeCCccccCCCCCHHHHHHHHHHHHhCCCcccceEEEEeeecccceeeccCCceEeEEEEEEEEcCC
Confidence            5999999988899999999999999999999999999999998752 11111   111     11123445566664432


Q ss_pred             CCCCCCCCCccceeeEEEEecccccccCCCccchhhhhhhhhhhhhhHHHHHHHHHhc
Q 020742          191 DDTAFAPQTKKEISEIAWQRLDELQPASDDVISHGVTGLKLYMVAPFLASLKKWISAH  248 (322)
Q Consensus       191 ~~~~~~~~~~~Ei~~~~Wv~ldeL~~~~~~~~~~~~~~~~~~~v~pf~~~L~~wi~~~  248 (322)
                      ....  +...+|+.++.|++++++.++...           ......+..+.+++..+
T Consensus       100 ~~~~--~~~~~E~~~~~W~~~~el~~~~~~-----------~~~~~~l~~~~~~l~~~  144 (149)
T 3son_A          100 CSYQ--VTLSLEHSELRWVSYESAIQLLEW-----------DSNKTALYELNERLKNN  144 (149)
T ss_dssp             TGGG--CCCCTTEEEEEEECHHHHHHHCCC-----------HHHHHHHHHHHHHHHTT
T ss_pred             CCCc--ccCCCceeeEEEeCHHHHHHHhcC-----------HHHHHHHHHHHHHHhhc
Confidence            1222  222488999999999999874211           12234456666666655

>3r03_A Nudix hydrolase; structural genomics, PSI2, protein structure INIT NEW YORK SGX research center for structural genomics, nysgx; HET: ADP; 2.49A {Rhodospirillum rubrum} SCOP: d.113.1.0

Probab=99.73  E-value=2.9e-17  Score=135.44  Aligned_cols=108  Identities=26%  Similarity=0.310  Sum_probs=78.3

Q ss_pred             cccccEEEEEEEeCCCCEEEEEEeeC----CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccce--eeeeeeee-ccc
Q 020742          104 KVRVPVTGAIILDETYERCILVKGWK----GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKL--LNKDEFIE-KIF  176 (322)
Q Consensus       104 ~~~v~v~g~Iv~~~~~~kvLLvrr~~----~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l--~~~~~~~~-~~~  176 (322)
                      ++.+.++++++++.+ ++|||++|..    .|.|+||||+++.||++.+||+||++||||+.+...  ..+..+.. ...
T Consensus         5 ~~~~~~~~~vi~~~~-~~vLl~~r~~~~~~~g~w~lPgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~   83 (144)
T 3r03_A            5 LPILLVTAAALIDPD-GRVLLAQRPPGKSLAGLWEFPGGKLEPGETPEAALVRELAEELGVDTRASCLAPLAFASHSYDT   83 (144)
T ss_dssp             -CEEEEEEEEEBCTT-SCEEEEECCTTSSSTTCEECSEEECCTTCCHHHHHHHHHHHHHCCBCCGGGCEEEEEEEEECSS
T ss_pred             CceeEEEEEEEEcCC-CEEEEEEeCCCCCCCCcEECCCcEecCCCCHHHHHHHHHHHHhCceeeccceEEEEeeeccCCC
Confidence            344566677777766 4899999875    489999999999999999999999999999998764  33332222 223


Q ss_pred             CeEEEEEEEEEeecCCCCCCCCCccceeeEEEEeccccccc
Q 020742          177 GQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  217 (322)
Q Consensus       177 ~~~~~~~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~  217 (322)
                      ....+.+|.+....+.    + ...|..++.|++++++.++
T Consensus        84 ~~~~~~~~~~~~~~~~----~-~~~e~~~~~W~~~~el~~~  119 (144)
T 3r03_A           84 FHLLMPLYACRSWRGR----A-TAREGQTLAWVRAERLREY  119 (144)
T ss_dssp             SEEEEEEEEECCCBSC----C-CCCSSCEEEEECGGGGGGS
T ss_pred             eEEEEEEEEEEecCCc----c-CCCCcceEEEEeHHHhccC
Confidence            3445556665433331    2 2467889999999999884

>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*

Probab=99.73  E-value=1.8e-17  Score=159.23  Aligned_cols=142  Identities=14%  Similarity=0.113  Sum_probs=107.7

Q ss_pred             eCCccCCCCCCcchHHHHHHHHhCCCCcccccccchhHHHhhhcCCcccccEEEEEEEeCCCCEEEEEEeeC----CCcE
Q 020742           58 DNSVENNPSLKSFTLKEFTSLMFNSCDVLRPYVAHIDDIFKDFTSYKVRVPVTGAIILDETYERCILVKGWK----GSSW  133 (322)
Q Consensus        58 d~~~~~~p~l~~~~l~~f~~~l~~~~~~l~~~~~~~~~~~~~~~~y~~~v~v~g~Iv~~~~~~kvLLvrr~~----~~~w  133 (322)
                      ..|++++|.|..|+++++|...-++....+|+...        ++..+.+.++++||.+.+ ++|||+||..    +|.|
T Consensus       199 ~~C~~~~P~C~~Cpl~~~C~~~~~~~~~~~PvK~~--------kk~~~~~~~~~~vi~~~~-g~vLL~rR~~~g~~~GlW  269 (369)
T 3fsp_A          199 LVCTPRRPSCLLCPVQAYCQAFAEGVAEELPVKMK--------KTAVKQVPLAVAVLADDE-GRVLIRKRDSTGLLANLW  269 (369)
T ss_dssp             HTSCSSSCCTTTCTTGGGCHHHHHTCGGGCSCCCC--------CCCCEEEEEEEEEEECSS-SEEEEEECCSSSTTTTCE
T ss_pred             HhcCCCCCCCCCCCChhhhHHHhcCCcccCCcccc--------ccCcceEEEEEEEEEeCC-CEEEEEECCCCCCcCCcc
Confidence            34888999999999999999999999888887765        455556667777777666 4999999975    5899


Q ss_pred             EcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeeeee-cccCeEEEEEEEEEeecCCCCCCCCCccceeeEEEEecc
Q 020742          134 SFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIE-KIFGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLD  212 (322)
Q Consensus       134 ~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~~~-~~~~~~~~~~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ld  212 (322)
                      +||||+++.| ++.+|++||+.||||+++.....+..+.. ....+..+++|.+.. ...       ..|..++.|++++
T Consensus       270 efPGG~ve~g-t~~~al~REl~EE~Gl~v~~~~~l~~~~h~~~h~~~~~~~~~~~~-~~~-------~~e~~~~~Wv~~~  340 (369)
T 3fsp_A          270 EFPSCETDGA-DGKEKLEQMVGEQYGLQVELTEPIVSFEHAFSHLVWQLTVFPGRL-VHG-------GPVEEPYRLAPED  340 (369)
T ss_dssp             ECCEEECSSS-CTHHHHHHHHTTSSSCCEEECCCCCEEEEECSSEEEEEEEEEEEE-CCS-------SCCCTTEEEEEGG
T ss_pred             cCCCcccCCC-CcHHHHHHHHHHHhCCceeeecccccEEEEcceEEEEEEEEEEEE-cCC-------CCCccccEEeeHH
Confidence            9999999999 99999999999999999876544433221 122223445555532 221       3566789999999


Q ss_pred             ccccc
Q 020742          213 ELQPA  217 (322)
Q Consensus       213 eL~~~  217 (322)
                      ++..+
T Consensus       341 el~~~  345 (369)
T 3fsp_A          341 ELKAY  345 (369)
T ss_dssp             GGGGS
T ss_pred             HhhhC
Confidence            99874

>1v8y_A ADP-ribose pyrophosphatase; nudix motif, loop-helix-loop, MUTT family, riken structural genomics/proteomics initiative, RSGI; HET: APR; 1.65A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1v8v_A* 1v8n_A 1v8l_A* 1v8m_A* 1v8i_A 1v8r_A* 1v8s_A* 1v8t_A* 1v8w_A 1v8u_A

Probab=99.72  E-value=1.4e-17  Score=142.16  Aligned_cols=107  Identities=21%  Similarity=0.358  Sum_probs=77.2

Q ss_pred             cccEEEEEEEeCCCCEEEEEEeeC----CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeeeee-cccCeEE
Q 020742          106 RVPVTGAIILDETYERCILVKGWK----GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIE-KIFGQQR  180 (322)
Q Consensus       106 ~v~v~g~Iv~~~~~~kvLLvrr~~----~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~~~-~~~~~~~  180 (322)
                      +.+++++++++ + +++||+++.+    .+.|+||||+++.||++.+||+||++||||+ +..+..+..+.. .......
T Consensus        33 ~~~~v~vii~~-~-~~vLL~~~~r~~~~~~~w~lPgG~ve~gEs~~~aa~REl~EEtGl-~~~~~~l~~~~~~~~~~~~~  109 (170)
T 1v8y_A           33 HKPAVAVIALR-E-GRMLFVRQMRPAVGLAPLEIPAGLIEPGEDPLEAARRELAEQTGL-SGDLTYLFSYFVSPGFTDEK  109 (170)
T ss_dssp             ECCEEEEEEEE-T-TEEEEEECCBTTTTBCCBBCSEEECCTTCCHHHHHHHHHHHHHSE-EEEEEEEEEEESCTTTBCCE
T ss_pred             cCCeEEEEEEE-C-CEEEEEEEEeCCCCCCEEECCccccCCCCCHHHHHHHHHHHHHCC-CcCceeeEEEecCCCccccE
Confidence            44678888888 4 4999999865    5789999999999999999999999999999 776666655433 2333456


Q ss_pred             EEEEEEEeecCCCCCCCCCccceeeEEEEeccccccc
Q 020742          181 VRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  217 (322)
Q Consensus       181 ~~~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~  217 (322)
                      +++|++...... . ...+.+|+.++.|++++++.++
T Consensus       110 ~~~f~~~~~~~~-~-~~~~~~E~~~~~W~~~~el~~~  144 (170)
T 1v8y_A          110 THVFLAENLKEV-E-AHPDEDEAIEVVWMRPEEALER  144 (170)
T ss_dssp             EEEEEEEEEEEC-C---------CEEEEECHHHHHHH
T ss_pred             EEEEEEEecccc-C-CCCCCCceEEEEEEEHHHHHHH
Confidence            777777654422 1 1234678899999999999874

>3exq_A Nudix family hydrolase; protein structure initiative II(PSI II), NYSGXRC, 11180K, structural genomics; 2.00A {Lactobacillus brevis atcc 367}

Probab=99.72  E-value=2.2e-17  Score=139.82  Aligned_cols=112  Identities=21%  Similarity=0.202  Sum_probs=80.1

Q ss_pred             cCCcccccEEEEEEEeCCCCEEEEEEeeC---CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeeeeec---
Q 020742          101 TSYKVRVPVTGAIILDETYERCILVKGWK---GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEK---  174 (322)
Q Consensus       101 ~~y~~~v~v~g~Iv~~~~~~kvLLvrr~~---~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~~~~---  174 (322)
                      ++..+...+++++|.+++.++|||++|..   .|.|+||||+++.||++.+||+||++||||+.+.....+..+...   
T Consensus         4 ~r~~~~~~~v~~vi~~~~~~~vLL~~r~~~~~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~   83 (161)
T 3exq_A            4 TRTQPVELVTMVMVTDPETQRVLVEDKVNVPWKAGHSFPGGHVEVGEPCATAAIREVFEETGLRLSGVTFCGTCEWFDDD   83 (161)
T ss_dssp             CSCCCEEEEEEEEEBCTTTCCEEEECCCCCTTTCSBBCCCCBCCTTSCHHHHHHHHHHHHHCCEESCCEEEEEEEEECSS
T ss_pred             CccCCceEEEEEEEEeCCCCEEEEEEccCCCCCCCEEccceecCCCCCHHHHHHHHHHHhhCcEecCCcEEEEEecccCC
Confidence            34445556677777777645999999876   467889999999999999999999999999998875544443221   


Q ss_pred             ccCeEEEEEEEEEeecCCCCCCCCCccceeeEEEEeccccccc
Q 020742          175 IFGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  217 (322)
Q Consensus       175 ~~~~~~~~~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~  217 (322)
                      ........+|.+....+.    + ...|..++.|+++++++++
T Consensus        84 ~~~~~~~~~~~~~~~~~~----~-~~~e~~~~~W~~~~el~~~  121 (161)
T 3exq_A           84 RQHRKLGLLYRASNFTGT----L-KASAEGQLSWLPITALTRE  121 (161)
T ss_dssp             CSSEEEEEEEEECCEESC----C-CGGGTTTEEEECGGGCCTT
T ss_pred             CCeEEEEEEEEEeccCCc----c-CCCccceEEEeeHHHhhhC
Confidence            222344455555433332    2 2466788999999999874

>2kdv_A RNA pyrophosphohydrolase; nudix family, magnesium, manganese, zinc; NMR {Escherichia coli} PDB: 2kdw_A

Probab=99.72  E-value=2.9e-16  Score=133.64  Aligned_cols=109  Identities=18%  Similarity=0.271  Sum_probs=78.8

Q ss_pred             ccEEEEEEEeCCCCEEEEEEeeCCCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeee------eecc-----
Q 020742          107 VPVTGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEF------IEKI-----  175 (322)
Q Consensus       107 v~v~g~Iv~~~~~~kvLLvrr~~~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~------~~~~-----  175 (322)
                      .+++++++++.+ ++|||++|...+.|.+|||+++.||++.+||+||++||||+++..+..+..+      ....     
T Consensus         8 ~~~v~~~i~~~~-~~vLl~~r~~~~~w~~p~G~~e~gE~~~~aa~RE~~EE~G~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (164)
T 2kdv_A            8 RPNVGIVICNRQ-GQVMWARRFGQHSWQFPQGGINPGESAEQAMYRELFEEVGLSRKDVRILASTRNWLRYKLPKRLVRW   86 (164)
T ss_dssp             EEEEEEEEECTT-SEEEEEEETTCCCEECCEEECCTTCCHHHHHHHHHHHHHCCCGGGEEEEEECSSCEEEECCTTTCCT
T ss_pred             CcEEEEEEEccC-CEEEEEEEcCCCeEECCeeecCCCCCHHHHHHHHHHHHHCCCccceEEEEEecceeEEecCcceeee
Confidence            346778888776 4999999887889999999999999999999999999999998865444332      1110     


Q ss_pred             -----cCeEEEEEEEEEeecCCCCCCC--CCccceeeEEEEecccccc
Q 020742          176 -----FGQQRVRLYIIAGVRDDTAFAP--QTKKEISEIAWQRLDELQP  216 (322)
Q Consensus       176 -----~~~~~~~~y~~~~~~~~~~~~~--~~~~Ei~~~~Wv~ldeL~~  216 (322)
                           ...+..++|++...........  ....|+.+++|++++++..
T Consensus        87 ~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~~~~E~~~~~W~~~~e~~~  134 (164)
T 2kdv_A           87 DTKPVCIGQKQKWFLLQLVSGDAEINMQTSSTPEFDGWRWVSYWYPVR  134 (164)
T ss_dssp             TSSSCCCEEEEEEEEEEESSCGGGCCSCSSSSCSEEEEEEEETTTGGG
T ss_pred             ccCcccccceeEEEEEEecCCccccccCCCCCchhceEEEecHHHhhh
Confidence                 1233556666654433222222  2346899999999999865

>2fkb_A Putative nudix hydrolase YFCD; putative protein, MAD, structural genomics, escherichia coli putative nudix hydrolase, PSI; HET: MSE; 2.00A {Escherichia coli K12} SCOP: d.113.1.2

Probab=99.72  E-value=1.3e-16  Score=137.06  Aligned_cols=127  Identities=18%  Similarity=0.251  Sum_probs=87.4

Q ss_pred             cEEEEEEEeCCCCEEEEEEeeC-----CCcEEc-ccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeeeee-cccCeEE
Q 020742          108 PVTGAIILDETYERCILVKGWK-----GSSWSF-PRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIE-KIFGQQR  180 (322)
Q Consensus       108 ~v~g~Iv~~~~~~kvLLvrr~~-----~~~w~f-PgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~~~-~~~~~~~  180 (322)
                      .++++++++.++ +|||++|..     .|.|+| |||+++.||++.+||+||++||||+.+..+..+..+.. ....+..
T Consensus        38 ~~~~v~i~~~~~-~vLl~~R~~~~~~~~g~w~l~pGG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~  116 (180)
T 2fkb_A           38 RATYIVVHDGMG-KILVQRRTETKDFLPGMLDATAGGVVQADEQLLESARREAEEELGIAGVPFAEHGQFYFEDKNCRVW  116 (180)
T ss_dssp             EEEEEEEECSSS-CEEEEEECSSCSSSTTCEESSBCCBCBTTCCHHHHHHHHHHHHHCCBSCCCEEEEEEEEEETTEEEE
T ss_pred             eEEEEEEECCCC-EEEEEECCCCCccCCCcEEeecCCCCCCCCCHHHHHHHHHHHHHCCCccceEEEEEEEecCCCceEE
Confidence            466777777664 899998864     478999 99999999999999999999999998877655555432 2223445


Q ss_pred             EEEEEEEeecCCCCCCCCCccceeeEEEEecccccccCCCccchhhhhhhhhhhhhhHHHHHHHHHhcCCC
Q 020742          181 VRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPASDDVISHGVTGLKLYMVAPFLASLKKWISAHKPS  251 (322)
Q Consensus       181 ~~~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~~~~~~~~~~~~~~~~~v~pf~~~L~~wi~~~~~~  251 (322)
                      .++|.+. ....  . ..+.+|+.++.|++++++.++...+            ..+....+..|+..+...
T Consensus       117 ~~~f~~~-~~~~--~-~~~~~E~~~~~W~~~~el~~~~~~~------------~~~~~~~l~~~~~~~~~~  171 (180)
T 2fkb_A          117 GALFSCV-SHGP--F-ALQEDEVSEVCWLTPEEITARCDEF------------TPDSLKALALWMKRNAKN  171 (180)
T ss_dssp             EEEEEEE-CCCC--C-CCCTTTEEEEEEECHHHHHTTGGGB------------CHHHHHHHHHHHHHC---
T ss_pred             EEEEEEe-cCCC--c-CCChhHhheEEEecHHHHHHHHHHh------------CCcHHHHHHHHHHhhcCC
Confidence            5666665 3322  1 2346889999999999998742111            123345566677665444

>1mk1_A ADPR pyrophosphatase; nudix hydrolase, adprase, adenosine DI ribose, RV1700, hydrolase; HET: APR; 2.00A {Mycobacterium tuberculosis} SCOP: d.113.1.1 PDB: 1mp2_A 1mqe_A* 1mqw_A* 1mr2_A*

Probab=99.71  E-value=1.4e-17  Score=147.20  Aligned_cols=110  Identities=20%  Similarity=0.366  Sum_probs=77.2

Q ss_pred             ccEEEEEEEeCCCCEEEEEEeeC----CCcEEcccccCC-CCCCHHHHHHHHHHHHhCCcccceeeeeeeee-cccCeEE
Q 020742          107 VPVTGAIILDETYERCILVKGWK----GSSWSFPRGKKN-KDEEDHACAIREVQEETGFDVSKLLNKDEFIE-KIFGQQR  180 (322)
Q Consensus       107 v~v~g~Iv~~~~~~kvLLvrr~~----~~~w~fPgG~ie-~gEs~~eaA~REv~EETGl~v~~l~~~~~~~~-~~~~~~~  180 (322)
                      ..++++++++.+ ++|||+++++    .+.|+||||+++ .||++.+||+||++||||+++..+..+..+.. .......
T Consensus        43 ~~av~v~i~~~~-~~vLLvrr~r~~~~~~~w~lPgG~ve~~gEs~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~  121 (207)
T 1mk1_A           43 FGAVAIVAMDDN-GNIPMVYQYRHTYGRRLWELPAGLLDVAGEPPHLTAARELREEVGLQASTWQVLVDLDTAPGFSDES  121 (207)
T ss_dssp             CCEEEEEECCTT-SEEEEEEEEETTTTEEEEECCEEECCSTTCCHHHHHHHHHHHHHCEEEEEEEEEEEECSCTTTBCCC
T ss_pred             CCEEEEEEEcCC-CEEEEEEeecCCCCCcEEEeCCccccCCCCCHHHHHHHHHHHHHCCcccccEEEEEEEcCCCccccE
Confidence            356777777766 4999999875    468999999999 99999999999999999999987665554422 2333346


Q ss_pred             EEEEEEEeecCCCCCCCCCccceeeEEEEeccccccc
Q 020742          181 VRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  217 (322)
Q Consensus       181 ~~~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~  217 (322)
                      +++|++............+++|+.++.|++++++.++
T Consensus       122 ~~~f~~~~~~~~~~~~~~~~~E~~~~~Wv~~~el~~~  158 (207)
T 1mk1_A          122 VRVYLATGLREVGRPEAHHEEADMTMGWYPIAEAARR  158 (207)
T ss_dssp             EEEEEEEEEEECCC----------CEEEEEHHHHHHH
T ss_pred             EEEEEEEccccCCCCCCCCCCceEEEEEEEHHHHHHH
Confidence            7778776554432211134678899999999999884

>3fk9_A Mutator MUTT protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.50A {Bacillus halodurans}

Probab=99.71  E-value=3.7e-17  Score=142.49  Aligned_cols=105  Identities=21%  Similarity=0.267  Sum_probs=74.7

Q ss_pred             ccEEEEEEEeCCCCEEEEEEeeCCCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeee--eeecccC----eEE
Q 020742          107 VPVTGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDE--FIEKIFG----QQR  180 (322)
Q Consensus       107 v~v~g~Iv~~~~~~kvLLvrr~~~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~--~~~~~~~----~~~  180 (322)
                      ..+++++|.++  ++|||++|...|.|.||||+++.||++.+||+||++||||+++.....+..  +......    ...
T Consensus         4 ~~v~~~vi~~~--~~vLL~~r~~~g~W~lPGG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (188)
T 3fk9_A            4 QRVTNCIVVDH--DQVLLLQKPRRGWWVAPGGKMEAGESILETVKREYWEETGITVKNPELKGIFSMVIFDEGKIVSEWM   81 (188)
T ss_dssp             CEEEEEEEEET--TEEEEEECTTTCCEECCEEECCTTCCHHHHHHHHHHHHHSCEESSCEEEEEEEEEEEETTEEEEEEE
T ss_pred             eEEEEEEEEEC--CEEEEEEeCCCCeEECCeecccCCCCHHHHHHHHHHHHHCCCCCCceEEEEEEEEecCCCcceEEEE
Confidence            34666777765  399999987789999999999999999999999999999999886444333  2221111    114


Q ss_pred             EEEEEEEeecCCCCCCCCCccceeeEEEEeccccccc
Q 020742          181 VRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  217 (322)
Q Consensus       181 ~~~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~  217 (322)
                      +.+|.+....+.    +....|..++.|+++++++.+
T Consensus        82 ~~~f~a~~~~~~----~~~~~e~~~~~W~~~~el~~~  114 (188)
T 3fk9_A           82 LFTFKATEHEGE----MLKQSPEGKLEWKKKDEVLEL  114 (188)
T ss_dssp             EEEEEESCEESC----CCSEETTEEEEEEEGGGGGGS
T ss_pred             EEEEEEECCCCC----CcCCCCCEeEEEEEHHHhhhC
Confidence            455555433332    223345578999999999874

>3oga_A Nucleoside triphosphatase NUDI; salmonella enterica subsp. enterica serovar typhimurium STR. unknown function; HET: PO4; 1.75A {Salmonella enterica subsp} PDB: 3n77_A

Probab=99.71  E-value=1.5e-16  Score=134.77  Aligned_cols=104  Identities=17%  Similarity=0.144  Sum_probs=68.0

Q ss_pred             cEEEEEEEeCCCCEEEEEEeeC-----CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeee--------eeeec
Q 020742          108 PVTGAIILDETYERCILVKGWK-----GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKD--------EFIEK  174 (322)
Q Consensus       108 ~v~g~Iv~~~~~~kvLLvrr~~-----~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~--------~~~~~  174 (322)
                      .++++|+.+ + ++|||++|..     .|.|+||||+++.||++.+||+||++||||+++.....+.        .+...
T Consensus        29 ~~~~~ii~~-~-~~vLL~~r~~~~~~~~g~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~  106 (165)
T 3oga_A           29 TIVCPLIQN-D-GCYLLCKMADNRGVFPGQWALSGGGVEPGERIEEALRREIREELGEQLILSDITPWTFRDDIRIKTYA  106 (165)
T ss_dssp             EEEEEEEEE-T-TEEEEEEECC------CCEECCCEECCTTCCHHHHHHHHHHHHHCSSCCEEEEEEEEEEEEEEEEEC-
T ss_pred             EEEEEEEeC-C-CEEEEEEecCCCCCCCCeEECCccccCCCCCHHHHHHHHHHHHhCCCccccceeeeeeecceeeEecC
Confidence            344444444 4 4999999864     3899999999999999999999999999999987532221        11111


Q ss_pred             ccCe--E--EEEEEEEEeecCCCCCCCCCccceeeEEEEeccccccc
Q 020742          175 IFGQ--Q--RVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  217 (322)
Q Consensus       175 ~~~~--~--~~~~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~  217 (322)
                      ....  .  .+.+|.+......    +...+|+.++.|++++++.++
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~E~~~~~W~~~~el~~~  149 (165)
T 3oga_A          107 DGRQEEIYMIYLIFDCVSANRD----ICINDEFQDYAWVKPEELALY  149 (165)
T ss_dssp             -CCEEEEEEEEEEEEEEESCCC----CCCCTTEEEEEEECGGGGGGS
T ss_pred             CCCceeEEEEEEEEEeeccCCC----ccCCchheeeEEccHHHHhhC
Confidence            1111  1  1223333322222    223478999999999999874

>2azw_A MUTT/nudix family protein; MUTT/nudix ,enterococcus faecalis, structural genomics, PSI, structure initiative; HET: 1PE; 1.90A {Enterococcus faecalis} SCOP: d.113.1.1

Probab=99.71  E-value=2.8e-17  Score=136.01  Aligned_cols=107  Identities=17%  Similarity=0.144  Sum_probs=75.2

Q ss_pred             cccEEEEEEEeCCCCEEEEEEeeCCCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeee---eec-c-c--Ce
Q 020742          106 RVPVTGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEF---IEK-I-F--GQ  178 (322)
Q Consensus       106 ~v~v~g~Iv~~~~~~kvLLvrr~~~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~---~~~-~-~--~~  178 (322)
                      ....+++||++++.++|||++|. .|.|.||||+++.||++.+||+||++||||+++.....+..+   ... . .  .+
T Consensus        17 ~~~~~~~vi~~~~~~~vLl~~r~-~g~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~   95 (148)
T 2azw_A           17 TRYAAYIIVSKPENNTMVLVQAP-NGAYFLPGGEIEGTETKEEAIHREVLEELGISVEIGCYLGEADEYFYSNHRQTAYY   95 (148)
T ss_dssp             ECCEEEEECEEGGGTEEEEEECT-TSCEECSEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEEEEEEETTTTEEEE
T ss_pred             eeeEEEEEEECCCCCeEEEEEcC-CCCEeCCCcccCCCCCHHHHHHHHHHHHhCCeeEeeeEEEEEEEEEcCCCCCcceE
Confidence            34456677777633599999974 689999999999999999999999999999998765444332   111 1 1  12


Q ss_pred             EEEEEEEEEeecCCCCCCCCCccceeeEEEEeccccccc
Q 020742          179 QRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  217 (322)
Q Consensus       179 ~~~~~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~  217 (322)
                      ..+.+|.+......    ....+|+.++.|++++++.++
T Consensus        96 ~~~~~~~~~~~~~~----~~~~~e~~~~~W~~~~el~~~  130 (148)
T 2azw_A           96 NPGYFYVANTWRQL----SEPLERTNTLHWVAPEEAVRL  130 (148)
T ss_dssp             EEEEEEEEEEEEEC----SSCC-CCSEEEEECHHHHHHH
T ss_pred             EEEEEEEEEcCcCC----cCCCCceeeEEEeeHHHHHhh
Confidence            34556666544332    223467789999999999873

>3i9x_A MUTT/nudix family protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.20A {Listeria innocua}

Probab=99.71  E-value=8.5e-18  Score=145.94  Aligned_cols=122  Identities=20%  Similarity=0.259  Sum_probs=76.7

Q ss_pred             HHHhhh--cCCcccc-cEEEEEEEe--CC----CCEEEEEEee----------CCCcEEcccccCCCCCCHHHHHHHHHH
Q 020742           95 DIFKDF--TSYKVRV-PVTGAIILD--ET----YERCILVKGW----------KGSSWSFPRGKKNKDEEDHACAIREVQ  155 (322)
Q Consensus        95 ~~~~~~--~~y~~~v-~v~g~Iv~~--~~----~~kvLLvrr~----------~~~~w~fPgG~ie~gEs~~eaA~REv~  155 (322)
                      +++..|  ..|++.. .+++++|+.  ++    .++|||++|.          ..|.|.||||+++.||++.+||+||++
T Consensus        12 ~~~~~~~~~~~~~p~~~~v~~vv~~~~~~~~~~~~~vLL~~r~~~~~~g~~~~~~g~w~lPGG~ve~gEs~~~aa~REl~   91 (187)
T 3i9x_A           12 DALKNYNAKEFRTPDGYTSDMILTTVKELNGKPTLHILLIKRSLTNAEGKPNMEGGKWAVPGGFVDENESAEQAAERELE   91 (187)
T ss_dssp             -----------CCCSEEEEEEEEEEEEEETTEEEEEEEEEECCSBCTTSSBCTTTTCEECSEEECCTTSCHHHHHHHHHH
T ss_pred             HHhccCCHhHcCCcccceEEEEEEEEcCCCCCCCCEEEEEEEccccccccCCCCCCEEECCceeCCCCCCHHHHHHHHHH
Confidence            445555  5566544 555555543  22    2489999993          278999999999999999999999999


Q ss_pred             HHhCCcccceeeeeeeeecc---cCeEEEEEEEEEeecCCCCCCCCCccceeeEEEEeccccccc
Q 020742          156 EETGFDVSKLLNKDEFIEKI---FGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  217 (322)
Q Consensus       156 EETGl~v~~l~~~~~~~~~~---~~~~~~~~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~  217 (322)
                      ||||+++..+..+..+....   .......+|++........ .....+|+.++.|+++++++.+
T Consensus        92 EEtGl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~E~~~~~W~~~~el~~~  155 (187)
T 3i9x_A           92 EETSLTDIPLIPFGVFDKPGRDPRGWIISRAFYAIVPPEALE-KRAAGDDAAEIGLFPMTEALEL  155 (187)
T ss_dssp             HHHCCCSCCCEEEEEECCTTSSTTSSEEEEEEEEECCHHHHH-HHHHSTTTTTEEEEEHHHHTTS
T ss_pred             HHHCCCCcceEEEEEEcCCccCCCCCEEEEEEEEEEcCcccC-CcCCCCceeEEEEEeHHHcccC
Confidence            99999988766665543322   1223334444432221111 1223577889999999999864

>2o1c_A DATP pyrophosphohydrolase; nudix NTP hydrolase NTP pyrophosphohydrolase MUTT dihydroneo triphosphate pyrophosphohydrolase folate biosynthesis; 1.80A {Escherichia coli} PDB: 2o5w_A

Probab=99.71  E-value=1e-16  Score=132.54  Aligned_cols=110  Identities=19%  Similarity=0.225  Sum_probs=76.7

Q ss_pred             CcccccEEEEEEEeCCCCEEEEEEeeC-CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccce--eeeee-----e--e
Q 020742          103 YKVRVPVTGAIILDETYERCILVKGWK-GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKL--LNKDE-----F--I  172 (322)
Q Consensus       103 y~~~v~v~g~Iv~~~~~~kvLLvrr~~-~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l--~~~~~-----~--~  172 (322)
                      |+..+ ++++++++.+.+++||++|.. .|.|.||||+++.||++.+||+||++||||+++...  ..+..     +  .
T Consensus         6 ~~~~~-~v~~~i~~~~~~~vLl~~r~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~   84 (150)
T 2o1c_A            6 YKRPV-SILVVIYAQDTKRVLMLQRRDDPDFWQSVTGSVEEGETAPQAAMREVKEEVTIDVVAEQLTLIDCQRTVEFEIF   84 (150)
T ss_dssp             CBCSE-EEEEEEEETTTCEEEEEECSSSTTCEESEEEECCTTCCHHHHHHHHHHHHHCCCHHHHTCCEEEEEEEEEEECC
T ss_pred             ccCce-EEEEEEEeCCCCEEEEEEecCCCCceECCccccCCCCCHHHHHHHHHHHHhCCCccccceeEEeeeceeeeeee
Confidence            44443 556777776435999999877 789999999999999999999999999999998752  12211     1  0


Q ss_pred             -------ecccCeEEEEEEEEEeecCCCCCCCCCccceeeEEEEeccccccc
Q 020742          173 -------EKIFGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  217 (322)
Q Consensus       173 -------~~~~~~~~~~~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~  217 (322)
                             .....+....+|.+.. .....   ....|+.++.|++++++.++
T Consensus        85 ~~~~~~~~~~~~~~~~~~f~~~~-~~~~~---~~~~E~~~~~W~~~~el~~~  132 (150)
T 2o1c_A           85 SHLRHRYAPGVTRNTESWFCLAL-PHERQ---IVFTEHLAYKWLDAPAAAAL  132 (150)
T ss_dssp             GGGGGGBCTTCCEEEEEEEEEEE-SSCCC---CCCSSSSCEEEEEHHHHHHH
T ss_pred             cccccccCCCCcceEEEEEEEEc-CCCCC---cChhHhhccEeecHHHHHhh
Confidence                   0011235556666644 33211   22378899999999999873

>1f3y_A Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase; enzyme,mixed 4-stranded beta sheet, 2-stranded antiparallel sheet; NMR {Lupinus angustifolius} SCOP: d.113.1.1 PDB: 1jkn_A*

Probab=99.70  E-value=4.8e-17  Score=136.85  Aligned_cols=110  Identities=18%  Similarity=0.371  Sum_probs=76.4

Q ss_pred             ccEEEEEEEeCCCCEEEEEEeeC-CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeee-eecc---------
Q 020742          107 VPVTGAIILDETYERCILVKGWK-GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEF-IEKI---------  175 (322)
Q Consensus       107 v~v~g~Iv~~~~~~kvLLvrr~~-~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~-~~~~---------  175 (322)
                      ..++++++++.+ ++|||++|.. +|.|++|||+++.||++.+||+||++||||+++..+...... ....         
T Consensus        14 ~~~v~~~i~~~~-~~vLl~~r~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~   92 (165)
T 1f3y_A           14 RRNVGICLMNND-KKIFAASRLDIPDAWQMPQGGIDEGEDPRNAAIRELREETGVTSAEVIAEVPYWLTYDFPPKVREKL   92 (165)
T ss_dssp             CCEEEEEEECTT-SCEEEEEETTEEEEEECCEEECCTTCCHHHHHHHHHHHHHCCCSEEEEEECSSCCBCCCCHHHHHHH
T ss_pred             eeeEEEEEECCC-CcEEEEecCCCCCcEECCeeccCCCCCHHHHHHHHHHHhhCCChhhhhcccccceeeecCccccccc
Confidence            346677778776 4999999876 689999999999999999999999999999988654332110 1100         


Q ss_pred             -------cCeEEEEEEEEEeecCCCCCCCC----CccceeeEEEEeccccccc
Q 020742          176 -------FGQQRVRLYIIAGVRDDTAFAPQ----TKKEISEIAWQRLDELQPA  217 (322)
Q Consensus       176 -------~~~~~~~~y~~~~~~~~~~~~~~----~~~Ei~~~~Wv~ldeL~~~  217 (322)
                             ...+..++|++............    +.+|+.+++|++++++.++
T Consensus        93 ~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~  145 (165)
T 1f3y_A           93 NIQWGSDWKGQAQKWFLFKFTGQDQEINLLGDGSEKPEFGEWSWVTPEQLIDL  145 (165)
T ss_dssp             GGGSCSSCCSCBEEEEEEEECSCGGGCCCCCCSSSCCSEEEEEEECHHHHHHH
T ss_pred             cccccccccCceEEEEEEEecCCcccccccCCCCCCChhheeEEecHHHHHHH
Confidence                   01124455655433322122221    3578999999999999884

>3ees_A Probable pyrophosphohydrolase; nudix, RNA pyrophosphohydrolase; 1.90A {Bdellovibrio bacteriovorus} PDB: 3eeu_A 3ef5_A* 3ffu_A*

Probab=99.70  E-value=1.6e-16  Score=131.98  Aligned_cols=105  Identities=19%  Similarity=0.262  Sum_probs=75.3

Q ss_pred             cccEEEEEEEeCCCCEEEEEEeeC----CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeeeee-cccCeEE
Q 020742          106 RVPVTGAIILDETYERCILVKGWK----GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIE-KIFGQQR  180 (322)
Q Consensus       106 ~v~v~g~Iv~~~~~~kvLLvrr~~----~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~~~-~~~~~~~  180 (322)
                      .+.++++|+.++  ++|||++|..    .|.|+||||+++.||++.+||+||+.||||+.+.....+..+.. .......
T Consensus        21 ~~~~~~~i~~~~--~~vLl~~r~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~   98 (153)
T 3ees_A           21 WIPVVAGFLRKD--GKILVGQRPENNSLAGQWEFPGGKIENGETPEEALARELNEELGIEAEVGELKLACTHSYGDVGIL   98 (153)
T ss_dssp             EEEEEEEEEEET--TEEEEEECCTTSTTTTCEECSEEECCTTCCHHHHHHHHHHHHHSCEEECCCEEEEEEEEETTEEEE
T ss_pred             eEEEEEEEEEEC--CEEEEEEeCCCCCCCCeEECCceeeCCCCCHHHHHHHHHHHHHCCccccCceEEEEEEecCCCeEE
Confidence            345555555544  4999999876    48999999999999999999999999999998876544433222 1222334


Q ss_pred             EEEEEEEeecCCCCCCCCCccceeeEEEEeccccccc
Q 020742          181 VRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  217 (322)
Q Consensus       181 ~~~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~  217 (322)
                      +.+|.+......     ....|+.++.|++++++.++
T Consensus        99 ~~~~~~~~~~~~-----~~~~e~~~~~W~~~~el~~~  130 (153)
T 3ees_A           99 ILFYEILYWKGE-----PRAKHHMMLEWIHPEELKHR  130 (153)
T ss_dssp             EEEEEECEEESC-----CCCSSSSEEEEECGGGGGGS
T ss_pred             EEEEEEEECCCC-----cCCCccceEEEecHHHhhhC
Confidence            555655443332     23577889999999999874

>2rrk_A ORF135, CTP pyrophosphohydrolase; NMR {Escherichia coli}

Probab=99.70  E-value=1.1e-16  Score=131.06  Aligned_cols=105  Identities=18%  Similarity=0.258  Sum_probs=74.6

Q ss_pred             cccEEEEEEEeCCCCEEEEEEeeC----CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeeeee-cccCeEE
Q 020742          106 RVPVTGAIILDETYERCILVKGWK----GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIE-KIFGQQR  180 (322)
Q Consensus       106 ~v~v~g~Iv~~~~~~kvLLvrr~~----~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~~~-~~~~~~~  180 (322)
                      .+.++++|+.++  ++|||++|..    .|.|+||||+++.||++.+||+||++||||+.+.....+..+.. .......
T Consensus         8 ~~~~~~~ii~~~--~~vLl~~r~~~~~~~g~w~lPgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~   85 (140)
T 2rrk_A            8 MIEVVAAIIERD--GKILLAQRPAQSDQAGLWEFAGGKVEPDESQRQALVRELREELGIEATVGEYVASHQREVSGRIIH   85 (140)
T ss_dssp             EEEEEEEEEEET--TEEEEEECCSSCSCCCCEECCEEECCTTSCHHHHHHHHHHHHSCEEEECCEEEEEEEEEETTEEEE
T ss_pred             cceEEEEEEEcC--CEEEEEEcCCCCCCCCEEECCceecCCCCCHHHHHHHHHHHHHCCeeecccEEEEEEEecCCcEEE
Confidence            445556666444  3999999865    59999999999999999999999999999999876544443322 1222334


Q ss_pred             EEEEEEEeecCCCCCCCCCccceeeEEEEeccccccc
Q 020742          181 VRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  217 (322)
Q Consensus       181 ~~~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~  217 (322)
                      +.+|.+......    + ...|+.++.|++++++.++
T Consensus        86 ~~~~~~~~~~~~----~-~~~e~~~~~W~~~~el~~~  117 (140)
T 2rrk_A           86 LHAWHVPDFHGT----L-QAHEHQALVWCSPEEALQY  117 (140)
T ss_dssp             EEEEEESEEEEC----C-CCSSCSCEEEECHHHHTTS
T ss_pred             EEEEEEEeeCCC----c-CCCccceeEEeCHHHHhhC
Confidence            555655433221    2 2467788999999999874

>3hhj_A Mutator MUTT protein; niaid, ssgcid, decode, UW, SBRI, infectious diseases, hydrol structural genomics; 2.10A {Bartonella henselae}

Probab=99.70  E-value=1.6e-16  Score=133.50  Aligned_cols=107  Identities=22%  Similarity=0.321  Sum_probs=76.8

Q ss_pred             ccccEEEEEEEeCCCCEEEEEEeeC----CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccce--eeeeeeee-cccC
Q 020742          105 VRVPVTGAIILDETYERCILVKGWK----GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKL--LNKDEFIE-KIFG  177 (322)
Q Consensus       105 ~~v~v~g~Iv~~~~~~kvLLvrr~~----~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l--~~~~~~~~-~~~~  177 (322)
                      ..+.++++++++.+ ++|||++|..    .|.|+||||+++.||++.+||+||++||||+.+...  ..+..+.. ....
T Consensus        27 ~~~~~~~~~i~~~~-~~vLL~~r~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~  105 (158)
T 3hhj_A           27 SLLIVVACALLDQD-NRVLLTQRPEGKSLAGLWEFPGGKVEQGETPEASLIRELEEELGVHVQADNLFPLTFASHGYETF  105 (158)
T ss_dssp             CEEEEEEEEEBCTT-SEEEEEECCCTTSCCCCCBCCEEECCTTCCHHHHHHHHHHHHHCCBCCGGGCEEEEEEEEECSSC
T ss_pred             ceEEEEEEEEEeCC-CEEEEEEeCCCCCCCCEEECCceeecCCCCHHHHHHHHHHHHhCcEeecceEEEEEEEeeccCCc
Confidence            34556667777766 4999999875    589999999999999999999999999999998764  23333222 2223


Q ss_pred             eEEEEEEEEEeecCCCCCCCCCccceeeEEEEeccccccc
Q 020742          178 QQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  217 (322)
Q Consensus       178 ~~~~~~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~  217 (322)
                      ...+.+|.+......    + ...|..++.|++++++.++
T Consensus       106 ~~~~~~~~~~~~~~~----~-~~~e~~~~~W~~~~el~~~  140 (158)
T 3hhj_A          106 HLLMPLYFCSHYKGV----A-QGREGQNLKWIFINDLDKY  140 (158)
T ss_dssp             EEEEEEEEESCCBSC----C-CCTTSCEEEEEEGGGGGGS
T ss_pred             EEEEEEEEEEECCCc----c-CCccccceEEEcHHHHhhC
Confidence            344555555333321    2 3477889999999999874

>1rya_A GDP-mannose mannosyl hydrolase; GDP-glucose, nudix, nudix Mg-complex; HET: GDP; 1.30A {Escherichia coli} SCOP: d.113.1.5 PDB: 2gt2_A 2gt4_A* 2i8t_A* 2i8u_A*

Probab=99.70  E-value=1.3e-16  Score=133.74  Aligned_cols=106  Identities=16%  Similarity=0.145  Sum_probs=75.0

Q ss_pred             cEEEEEEEeCCCCEEEEEEeeC---CCcEEcccccCCCCCCHHHHHHHHHHHHhCCccc--ceeeeeee--eeccc----
Q 020742          108 PVTGAIILDETYERCILVKGWK---GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVS--KLLNKDEF--IEKIF----  176 (322)
Q Consensus       108 ~v~g~Iv~~~~~~kvLLvrr~~---~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~--~l~~~~~~--~~~~~----  176 (322)
                      .++++|+++.+ ++|||++|..   .|.|.||||+++.||++.+||+||++||||+.+.  .+..+..+  .....    
T Consensus        19 ~~v~~vi~~~~-~~vLl~~r~~~~~~g~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~   97 (160)
T 1rya_A           19 VSLDFIVENSR-GEFLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFERLTMAELGLRLPITAGQFYGVWQHFYDDNFSGT   97 (160)
T ss_dssp             EEEEEEEECTT-SCEEEEEECSSSSTTSEECCEEECCTTCCHHHHHHHHHHHHHSSCCCGGGSEEEEEEEEEESSBTTBS
T ss_pred             EEEEEEEEcCC-CEEEEEeccCCCCCCEEECCccccCCCCCHHHHHHHHHHHHHCCCCCcccceEEEEEeEEEcccccCC
Confidence            46677777755 4899999977   6899999999999999999999999999999863  33333222  11110    


Q ss_pred             --C-eEEEEEEEEEeecCCCCCCCCCccceeeEEEEeccccccc
Q 020742          177 --G-QQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  217 (322)
Q Consensus       177 --~-~~~~~~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~  217 (322)
                        . +....+|.+....+.  . ....+|+.++.|++++++.++
T Consensus        98 ~~~~~~~~~~f~~~~~~~~--~-~~~~~e~~~~~W~~~~el~~~  138 (160)
T 1rya_A           98 DFTTHYVVLGFRFRVSEEE--L-LLPDEQHDDYRWLTSDALLAS  138 (160)
T ss_dssp             SSCEEEEEEEEEEECCGGG--C-CCCSSSEEEEEEECHHHHHHC
T ss_pred             CcCcEEEEEEEEEEcCccc--c-ccCCCccceEEEecHHHHhhc
Confidence              1 344555655433222  1 224578899999999999874

>2b0v_A Nudix hydrolase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.55A {Nitrosomonas europaea} SCOP: d.113.1.1

Probab=99.69  E-value=1.2e-16  Score=133.00  Aligned_cols=103  Identities=21%  Similarity=0.225  Sum_probs=72.4

Q ss_pred             EEEEEeCCCCEEEEEEeeC---CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeee--eecccC-eEEEEEE
Q 020742          111 GAIILDETYERCILVKGWK---GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEF--IEKIFG-QQRVRLY  184 (322)
Q Consensus       111 g~Iv~~~~~~kvLLvrr~~---~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~--~~~~~~-~~~~~~y  184 (322)
                      ++|+.++  ++|||+++.+   .+.|.||||+++.||++.+||+||++||||+++.....+..+  ...... .....+|
T Consensus        12 ~~ii~~~--~~vLl~~r~~~~~~~~w~lPgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~f   89 (153)
T 2b0v_A           12 AAVIEQD--DKYLLVEEIPRGTAIKLNQPAGHLEPGESIIQACSREVLEETGHSFLPEVLTGIYHWTCASNGTTYLRFTF   89 (153)
T ss_dssp             EEECEET--TEEEEEEECSSSSCCEEECSEEECCTTSCHHHHHHHHHHHHHSEEEEEEEEEEEEEEEETTTTEEEEEEEE
T ss_pred             EEEEeeC--CEEEEEEEcCCCCCCeEECCCcCcCCCCCHHHHHHHHHHHhhCcEeccceEEEEEEEeCCCCCcEEEEEEE
Confidence            4444444  3999999876   358999999999999999999999999999998765444432  222212 2334456


Q ss_pred             EEEeecCCCCCCCCCccceeeEEEEeccccccc
Q 020742          185 IIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  217 (322)
Q Consensus       185 ~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~  217 (322)
                      .+.......  ......|+.++.|++++++.++
T Consensus        90 ~~~~~~~~~--~~~~~~e~~~~~W~~~~el~~~  120 (153)
T 2b0v_A           90 SGQVVSFDP--DRKLDTGIVRAAWFSIDEIRAK  120 (153)
T ss_dssp             EEEEEEECT--TSCCCTTEEEEEEEEHHHHHHT
T ss_pred             EEEeCCCCC--CCCCCCCeeeEEEecHHHHhhh
Confidence            554433221  1234578899999999999874

>2fb1_A Conserved hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG; 2.50A {Bacteroides thetaiotaomicron} SCOP: a.4.5.68 d.113.1.6

Probab=99.69  E-value=6.6e-17  Score=145.15  Aligned_cols=116  Identities=21%  Similarity=0.201  Sum_probs=82.7

Q ss_pred             hcCCcccccEEEEEEE--eCCCCEEEEEEeeC---CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeeeeec
Q 020742          100 FTSYKVRVPVTGAIIL--DETYERCILVKGWK---GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEK  174 (322)
Q Consensus       100 ~~~y~~~v~v~g~Iv~--~~~~~kvLLvrr~~---~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~~~~  174 (322)
                      +..|.....++++||+  +++.++|||++|..   .|.|.+|||+++.|||+.+||+||++||||+++..+..+..+...
T Consensus         6 ~~~~~~p~v~v~~vi~~~~~~~~~vLLv~r~~~~~~g~w~lPGG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~l~~~~~~   85 (226)
T 2fb1_A            6 YSSNPTFYLGIDCIIFGFNEGEISLLLLKRNFEPAMGEWSLMGGFVQKDESVDDAAKRVLAELTGLENVYMEQVGAFGAI   85 (226)
T ss_dssp             TTTSCCEEEEEEEEEEEEETTEEEEEEEECSSSSSTTCEECEEEECCTTSCHHHHHHHHHHHHHCCCSCEEEEEEEECCT
T ss_pred             cccCCCCeEEEEEEEEEEeCCCCEEEEEECcCCCCCCCEECCeeccCCCCCHHHHHHHHHHHHHCCCCCceEEEEEeCCC
Confidence            4556665566677776  23345999999976   689999999999999999999999999999999876666655332


Q ss_pred             c--cCeEEEE-EEEEEeecCCCCCCCCCccceeeEEEEecccccccC
Q 020742          175 I--FGQQRVR-LYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPAS  218 (322)
Q Consensus       175 ~--~~~~~~~-~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~~  218 (322)
                      .  .....+. .|++. +....  .+....|+.++.|+++++++++.
T Consensus        86 ~r~~~~~~v~~~y~a~-~~~~~--~~~~~~e~~~~~W~~~~el~~l~  129 (226)
T 2fb1_A           86 DRDPGERVVSIAYYAL-ININE--YDRELVQKHNAYWVNINELPALI  129 (226)
T ss_dssp             TSSSSSCEEEEEEEEE-CCTTS--SCHHHHHHTTEEEEETTSCCCBS
T ss_pred             CcCCCceEEEEEEEEE-ecCcc--cccCCccccceEEEEHHHhhhcc
Confidence            2  1223344 45543 33321  12234788899999999998753

>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A

Probab=99.68  E-value=4e-16  Score=143.68  Aligned_cols=111  Identities=22%  Similarity=0.226  Sum_probs=83.6

Q ss_pred             cCCcccccEEEEEEEeCCCCEEEEEEeeC--CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeeeeecccCe
Q 020742          101 TSYKVRVPVTGAIILDETYERCILVKGWK--GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQ  178 (322)
Q Consensus       101 ~~y~~~v~v~g~Iv~~~~~~kvLLvrr~~--~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~~~~~~~~  178 (322)
                      ..|....+++.+++.++  ++|||+++.+  .|.|++|||++|.|||+++||+||++||||+++..+..+..+. ..+.+
T Consensus       134 ~~yp~~~~~viv~v~~~--~~vLL~rr~~~~~g~w~lPgG~vE~GEt~eeAa~REv~EEtGl~v~~~~~~~~~~-~~~~~  210 (269)
T 1vk6_A          134 RYYPQIAPCIIVAIRRD--DSILLAQHTRHRNGVHTVLAGFVEVGETLEQAVAREVMEESGIKVKNLRYVTSQP-WPFPQ  210 (269)
T ss_dssp             EECCCCEEEEEEEEEET--TEEEEEEETTTCSSCCBCEEEECCTTCCHHHHHHHHHHHHHCCEEEEEEEEEEEE-EETTE
T ss_pred             EecCCCCcEEEEEEEeC--CEEEEEEecCCCCCcEECCcCcCCCCCCHHHHHHHHHHHHhCceeeeEEEEEEEe-cCCCC
Confidence            44555555555555554  4999999876  6899999999999999999999999999999998766665542 23445


Q ss_pred             EEEEEEEEEeecCCCCCCCCCccceeeEEEEeccccccc
Q 020742          179 QRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  217 (322)
Q Consensus       179 ~~~~~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~  217 (322)
                      ..+..|.+....+.  . ..+.+|+.++.|+++++++.+
T Consensus       211 ~~~~~f~a~~~~~~--~-~~~~~E~~~~~W~~~~el~~l  246 (269)
T 1vk6_A          211 SLMTAFMAEYDSGD--I-VIDPKELLEANWYRYDDLPLL  246 (269)
T ss_dssp             EEEEEEEEEEEECC--C-CCCTTTEEEEEEEETTSCCSC
T ss_pred             EEEEEEEEEECCCC--c-CCCCcceEEEEEEEHHHhhhc
Confidence            56667777554433  1 234678999999999999875

>3q93_A 7,8-dihydro-8-oxoguanine triphosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 1.80A {Homo sapiens} PDB: 1iry_A 3zr0_A* 3zr1_A

Probab=99.68  E-value=5.1e-16  Score=133.65  Aligned_cols=103  Identities=19%  Similarity=0.282  Sum_probs=73.4

Q ss_pred             EEEEEEEeCCCCEEEEEEeeC---CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeeeee--ccc-CeEEEE
Q 020742          109 VTGAIILDETYERCILVKGWK---GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIE--KIF-GQQRVR  182 (322)
Q Consensus       109 v~g~Iv~~~~~~kvLLvrr~~---~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~~~--~~~-~~~~~~  182 (322)
                      ++++++++.+ ++|||++|.+   .|.|.||||+++.||++.+||+||++||||+++..+..+..+..  ... ....+.
T Consensus        26 ~~~~~vi~~~-~~vLL~~r~~~~~~g~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~~  104 (176)
T 3q93_A           26 LYTLVLVLQP-QRVLLGMKKRGFGAGRWNGFGGKVQEGETIEDGARRELQEESGLTVDALHKVGQIVFEFVGEPELMDVH  104 (176)
T ss_dssp             EEEEEEEECS-SEEEEEEECSSTTTTSEECEEEECCTTSCHHHHHHHHHHHHHSCEESCCEEEEEEEEEETTCSCEEEEE
T ss_pred             EEEEEEEEeC-CEEEEEEEcCCCCCCeEECceecCCCCCCHHHHHHHHHHHHHCCcceeeEEEEEEEEEcCCCCcEEEEE
Confidence            3344444444 4999999866   68999999999999999999999999999999987655554322  111 233456


Q ss_pred             EEEEEeecCCCCCCCCCccceeeEEEEeccccccc
Q 020742          183 LYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  217 (322)
Q Consensus       183 ~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~  217 (322)
                      +|.+....+.    +. ..|..++.|+++++++.+
T Consensus       105 ~f~~~~~~~~----~~-~~e~~~~~W~~~~el~~~  134 (176)
T 3q93_A          105 VFCTDSIQGT----PV-ESDEMRPCWFQLDQIPFK  134 (176)
T ss_dssp             EEEESCEESC----CC-CCSSEEEEEEETTCCCGG
T ss_pred             EEEEECCCCC----cC-CCcceeeEEeeHHHcccc
Confidence            6666434332    22 345677899999999863

>3f13_A Putative nudix hydrolase family member; structural genomics, PSI-2, protein structure initiative; 1.70A {Chromobacterium violaceum}

Probab=99.68  E-value=4.3e-16  Score=132.84  Aligned_cols=98  Identities=24%  Similarity=0.400  Sum_probs=69.5

Q ss_pred             cccEEEEEEEeCCCCEEEEEEeeCCCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeeeeecccCeEEEEEEE
Q 020742          106 RVPVTGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQQRVRLYI  185 (322)
Q Consensus       106 ~v~v~g~Iv~~~~~~kvLLvrr~~~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~~~~~~~~~~~~~y~  185 (322)
                      .+.++++|+.+++  ++||+++. .|.|.||||+++.||++.+||+||++||||+++..+..+..+....   ....+|+
T Consensus        15 ~~~~~~~ii~~~~--~vLL~~r~-~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~~~~~~---~~~~~f~   88 (163)
T 3f13_A           15 LARRATAIIEMPD--GVLVTASR-GGRYNLPGGKANRGELRSQALIREIREETGLRINSMLYLFDHITPF---NAHKVYL   88 (163)
T ss_dssp             CEEEEEEECEETT--EEEEEECC----BBCSEEECCTTCCHHHHHHHHHHHHHCCCCCEEEEEEEEECSS---EEEEEEE
T ss_pred             ceEEEEEEEEeCC--EEEEEEEC-CCeEECCceeCCCCCCHHHHHHHHHHHHHCcccceeEEEEEEecCC---eEEEEEE
Confidence            3445555556553  89999986 6899999999999999999999999999999998766665543322   5556666


Q ss_pred             EEeecCCCCCCCCCccceeeEEEEecccc
Q 020742          186 IAGVRDDTAFAPQTKKEISEIAWQRLDEL  214 (322)
Q Consensus       186 ~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL  214 (322)
                      +. ..+.    +...+|+.++.|++.+.+
T Consensus        89 ~~-~~~~----~~~~~E~~~~~W~~~~~~  112 (163)
T 3f13_A           89 CI-AQGQ----PKPQNEIERIALVSSPDT  112 (163)
T ss_dssp             EE-C-CC----CCCCTTCCEEEEESSTTC
T ss_pred             EE-ECCc----CccCCCceEEEEECcccc
Confidence            63 4332    223358899999995444

>2pqv_A MUTT/nudix family protein; structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 1.63A {Streptococcus pneumoniae}

Probab=99.68  E-value=2.3e-16  Score=131.94  Aligned_cols=104  Identities=19%  Similarity=0.233  Sum_probs=71.7

Q ss_pred             EEEEEEEeCCCCEEEEEEeeCCCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeee--eeecccC---eEEEEE
Q 020742          109 VTGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDE--FIEKIFG---QQRVRL  183 (322)
Q Consensus       109 v~g~Iv~~~~~~kvLLvrr~~~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~--~~~~~~~---~~~~~~  183 (322)
                      ++++||+++  ++|||++|  .+.|.||||+++.||++.+||+||++||||+++.....+..  +.....+   +....+
T Consensus        21 ~~~~ii~~~--~~vLl~~r--~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (154)
T 2pqv_A           21 RATALIVQN--HKLLVTKD--KGKYYTIGGAIQVNESTEDAVVREVKEELGVKAQAGQLAFVVENRFEVDGVSYHNIEFH   96 (154)
T ss_dssp             EEEECCEET--TEEEEEEE--TTEEECEEEECBTTCCHHHHHHHHHHHHHCCCEEEEEEEEEEEEEEEETTEEEEEEEEE
T ss_pred             EEEEEEEEC--CEEEEEec--CCeEECcccCcCCCCCHHHHHHHHHHHHhCCeeeeceEEEEEeeeecCCCCcceEEEEE
Confidence            455666664  39999999  68999999999999999999999999999999875433322  1111111   123344


Q ss_pred             EEEEeecCCCCCCCCCccceeeEEEEeccccccc
Q 020742          184 YIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  217 (322)
Q Consensus       184 y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~  217 (322)
                      |.+.. ...........+|+.++.|++++++..+
T Consensus        97 f~~~~-~~~~~~~~~~~~e~~~~~W~~~~el~~~  129 (154)
T 2pqv_A           97 YLVDL-LEDAPLTMQEDEKRQPCEWIDLDKLQNI  129 (154)
T ss_dssp             EEEEE-SSCCCSEEEETTEEEEEEEEEGGGGGGS
T ss_pred             EEEEe-cCCCCcccCCCCceeeEEEeEHHHHhhc
Confidence            55543 3322211223567889999999999874

>1k2e_A Nudix homolog; nudix/MUTT-like fold, mixed alpha/beta, dimer, putative NUDI hydrolase, structural genomics, unknown function; 1.80A {Pyrobaculum aerophilum} SCOP: d.113.1.1 PDB: 1jrk_A 1k26_A

Probab=99.67  E-value=2.9e-16  Score=132.06  Aligned_cols=56  Identities=27%  Similarity=0.455  Sum_probs=49.3

Q ss_pred             cEEEEEEEeCCCCEEEEEEeeCCCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccce
Q 020742          108 PVTGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKL  165 (322)
Q Consensus       108 ~v~g~Iv~~~~~~kvLLvrr~~~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l  165 (322)
                      .++++||+++  ++|||+++...|.|.||||+++.||++.+||+||++||||+++...
T Consensus         2 ~~~~~vi~~~--~~vLL~~r~~~g~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~   57 (156)
T 1k2e_A            2 IVTSGVLVEN--GKVLLVKHKRLGVYIYPGGHVEHNETPIEAVKREFEEETGIVVEPI   57 (156)
T ss_dssp             EEEEEECEET--TEEEEEECTTTCSEECSEEECCTTCCHHHHHHHHHHHHHSEEEEEC
T ss_pred             eEEEEEEEEC--CEEEEEEEcCCCcEECCeeecCCCCCHHHHHHHHHHHHHCCcceec
Confidence            3567777773  4999999877899999999999999999999999999999988754

>2fvv_A Diphosphoinositol polyphosphate phosphohydrolase 1; nudix, inositol polyphosphate metabolism, structural genomics, structural genomics consortium; HET: IHP; 1.25A {Homo sapiens} SCOP: d.113.1.1 PDB: 2q9p_A* 2duk_A 3mcf_A*

Probab=99.67  E-value=5.6e-17  Score=142.28  Aligned_cols=105  Identities=19%  Similarity=0.296  Sum_probs=72.6

Q ss_pred             EEEEEE-eCCCCEEEEEEeeC-CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeeeeecccCeEEEEEEEEE
Q 020742          110 TGAIIL-DETYERCILVKGWK-GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQQRVRLYIIA  187 (322)
Q Consensus       110 ~g~Iv~-~~~~~kvLLvrr~~-~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~~~~~~~~~~~~~y~~~  187 (322)
                      +++|++ +++.++|||++|.+ ++.|+||||+++.||++.+||+||++||||+++.....+..+... .......+|++.
T Consensus        43 ~~~vi~~~~~~~~vLLv~r~~~~g~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~l~~~~~~-~~~~~~~~f~~~  121 (194)
T 2fvv_A           43 AACLCFRSESEEEVLLVSSSRHPDRWIVPGGGMEPEEEPSVAAVREVCEEAGVKGTLGRLVGIFENQ-ERKHRTYVYVLI  121 (194)
T ss_dssp             EEEEEESSTTCCEEEEEECSSCTTSEECSEEECCTTCCHHHHHHHHHHHHHCEEEEEEEEEEEEEET-TTTEEEEEEEEE
T ss_pred             EEEEEEEECCCCEEEEEEEeCCCCcEECCCCcCCCCcCHHHHHHHHHHHHhCCccccceEEEEEEcC-CCceEEEEEEEE
Confidence            344444 34345999999876 789999999999999999999999999999998876555554332 233455666654


Q ss_pred             eecCCCCCCCCCccceeeEEEEecccccc
Q 020742          188 GVRDDTAFAPQTKKEISEIAWQRLDELQP  216 (322)
Q Consensus       188 ~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~  216 (322)
                      ........ .....+..++.|++++++++
T Consensus       122 ~~~~~~~~-~~~~e~~~~~~W~~~~el~~  149 (194)
T 2fvv_A          122 VTEVLEDW-EDSVNIGRKREWFKIEDAIK  149 (194)
T ss_dssp             EEEECSSC-HHHHHHCCCEEEEEHHHHHH
T ss_pred             EccccCCC-CCcccccceEEEEEHHHHHH
Confidence            22211110 11112346899999999986

>2b06_A MUTT/nudix family protein; structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 1.40A {Streptococcus pneumoniae} SCOP: d.113.1.1

Probab=99.67  E-value=2.4e-16  Score=131.82  Aligned_cols=110  Identities=20%  Similarity=0.224  Sum_probs=74.9

Q ss_pred             CCcccccEEEEEEEeCCCCE--EEEEEeeC---CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeee--eec
Q 020742          102 SYKVRVPVTGAIILDETYER--CILVKGWK---GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEF--IEK  174 (322)
Q Consensus       102 ~y~~~v~v~g~Iv~~~~~~k--vLLvrr~~---~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~--~~~  174 (322)
                      ++.....++++||.+++.++  +||++|..   .| |.||||+++.||++.+||+||++||||+++.....+..+  ...
T Consensus         3 r~~~~~~~~~~ii~~~~~~~~~vLl~~r~~~~~~g-w~lPgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~   81 (155)
T 2b06_A            3 RSQLTILTNICLIEDLETQRVVMQYRAPENNRWSG-YAFPGGHVENDEAFAESVIREIYEETGLTIQNPQLVGIKNWPLD   81 (155)
T ss_dssp             GGGCEEEEEEEEEEETTTTEEEEEEEC-----CCE-EECCCCBCCTTSCHHHHHHHHHHHHHSEEEESCEEEEEEEEECT
T ss_pred             CCcCcEEEEEEEEEECCCCeEEEEEEECCCCCCCC-EeccceecCCCCCHHHHHHHHHHHHhCccccCCcEEEEEeeccC
Confidence            34455567778888764222  88888765   34 899999999999999999999999999998765444332  221


Q ss_pred             ccCeEEEEEEEEEeecCCCCCCCCCccceeeEEEEeccccccc
Q 020742          175 IFGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  217 (322)
Q Consensus       175 ~~~~~~~~~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~  217 (322)
                      ......+.+|.+....+.    + ...|+.++.|++++++.++
T Consensus        82 ~~~~~~~~~~~~~~~~~~----~-~~~e~~~~~W~~~~el~~~  119 (155)
T 2b06_A           82 TGGRYIVICYKATEFSGT----L-QSSEEGEVSWVQKDQIPNL  119 (155)
T ss_dssp             TSCEEEEEEEEECEEEEC----C-CCBTTBEEEEEEGGGGGGS
T ss_pred             CCceEEEEEEEEEecCCC----C-CCCcceeeEEeeHHHhhhC
Confidence            123445566665443322    2 2367789999999999874

>1mut_A MUTT, nucleoside triphosphate pyrophosphohydrolase; DNA repair; NMR {Escherichia coli} SCOP: d.113.1.1 PDB: 1ppx_A* 1pun_A* 1puq_A* 1pus_A* 1tum_A* 3a6s_A* 3a6t_A* 3a6u_A* 3a6v_A*

Probab=99.66  E-value=9.4e-17  Score=129.56  Aligned_cols=102  Identities=20%  Similarity=0.260  Sum_probs=73.0

Q ss_pred             EEEEEEeCCCCEEEEEEeeC----CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeeeee-cccCeEEEEEE
Q 020742          110 TGAIILDETYERCILVKGWK----GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIE-KIFGQQRVRLY  184 (322)
Q Consensus       110 ~g~Iv~~~~~~kvLLvrr~~----~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~~~-~~~~~~~~~~y  184 (322)
                      ++++|++.+ ++|||++|..    .|.|+||||+++.||++.+||+||++||||+.+.....+..+.. .......+++|
T Consensus         7 ~~~ii~~~~-~~vLl~~r~~~~~~~g~w~~PgG~~e~gE~~~~aa~RE~~EE~G~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (129)
T 1mut_A            7 AVGIIRNEN-NEIFITRRAADAHMANKLEFPGGKIEMGETPEQAVVRELQEEVGITPQHFSLFEKLEYEFPDRHITLWFW   85 (129)
T ss_dssp             CCEECEETT-TEEEEEECSSCCSSSCCEECCCCCSSSCSSTTHHHHHHHHTTTCCSSCEECCCCCCBCCCSSCEEECCCE
T ss_pred             EEEEEEecC-CEEEEEEeCCCCCCCCeEECCccCcCCCCCHHHHHHHHHHHHhCCccccceEEEEEEEecCCceEEEEEE
Confidence            345555665 4999999876    49999999999999999999999999999999876544433221 12223344566


Q ss_pred             EEEeecCCCCCCCCCccceeeEEEEeccccccc
Q 020742          185 IIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  217 (322)
Q Consensus       185 ~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~  217 (322)
                      .+......    + ...|+.++.|++++++.++
T Consensus        86 ~~~~~~~~----~-~~~e~~~~~W~~~~el~~~  113 (129)
T 1mut_A           86 LVERWEGE----P-WGKEGQPGEWMSLVGLNAD  113 (129)
T ss_dssp             EEEECSSC----C-CCCSSCCCEEEESSSCCTT
T ss_pred             EEEccCCc----c-CCcccceeEEeCHHHcccc
Confidence            66543321    2 2467788999999999874

>1nqz_A COA pyrophosphatase (MUTT/nudix family protein); D.radiodurans, hydrolase; 1.70A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1nqy_A

Probab=99.66  E-value=2.2e-16  Score=137.50  Aligned_cols=109  Identities=19%  Similarity=0.164  Sum_probs=77.7

Q ss_pred             cEEEEEEEeCCCC-EEEEEEeeC-----CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeeeee-cccCeEE
Q 020742          108 PVTGAIILDETYE-RCILVKGWK-----GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIE-KIFGQQR  180 (322)
Q Consensus       108 ~v~g~Iv~~~~~~-kvLLvrr~~-----~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~~~-~~~~~~~  180 (322)
                      ..+++|+++.+++ +|||++|..     .|.|+||||+++.||++.+||+||++||||+++..+..+..+.. ....+..
T Consensus        35 ~~~~~v~i~~~~~~~vLL~~r~~~~~~~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~  114 (194)
T 1nqz_A           35 RAAVLVALTREADPRVLLTVRSSELPTHKGQIAFPGGSLDAGETPTQAALREAQEEVALDPAAVTLLGELDDVFTPVGFH  114 (194)
T ss_dssp             EEEEEEEEESSSSCBBCEEEEC------CCCEECSEEECCTTCCHHHHHHHHHHHHHCCCGGGCEEEEECCCEEETTTEE
T ss_pred             eEEEEEEEecCCCeEEEEEEecCCCCCCCCeEECCcccCCCCCCHHHHHHHHHHHHHCCCccceEEEEEccCccCCCCeE
Confidence            3445555555422 899999863     68999999999999999999999999999999987655554322 2233456


Q ss_pred             EEEEEEEeecCCCCCCCCCccceeeEEEEecccc-ccc
Q 020742          181 VRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDEL-QPA  217 (322)
Q Consensus       181 ~~~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL-~~~  217 (322)
                      +++|++... ........+.+|+.++.|++++++ ++.
T Consensus       115 ~~~f~~~~~-~~~~~~~~~~~E~~~~~W~~~~el~~~~  151 (194)
T 1nqz_A          115 VTPVLGRIA-PEALDTLRVTPEVAQIITPTLAELRAVP  151 (194)
T ss_dssp             EEEEEEEEC-GGGGGGCCCCTTEEEEECCBHHHHHHSC
T ss_pred             EEEEEEEec-CCccccCCCccceeEEEEEEHHHhccCC
Confidence            677766543 221101235688999999999999 763

>2dsc_A ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP-ribose pyrophosphatase, NUDT5, hydrolase; HET: APR; 2.00A {Homo sapiens} PDB: 2dsd_A* 3bm4_A* 2dsb_A 3aca_A* 3ac9_A* 3l85_A*

Probab=99.65  E-value=5.8e-16  Score=137.27  Aligned_cols=110  Identities=22%  Similarity=0.292  Sum_probs=76.9

Q ss_pred             cEEEEEEE--eCC-CCEEEEEEeeC----CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeee-eecccCeE
Q 020742          108 PVTGAIIL--DET-YERCILVKGWK----GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEF-IEKIFGQQ  179 (322)
Q Consensus       108 ~v~g~Iv~--~~~-~~kvLLvrr~~----~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~-~~~~~~~~  179 (322)
                      .+++++.+  +++ .++|||+++++    .+.|+||||++++||++.+||+||++||||+.+..+..+..+ ..+...+.
T Consensus        62 ~av~v~~v~~~~~~~~~vlLv~q~R~~~~~~~welPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~  141 (212)
T 2dsc_A           62 DGVAVIPVLQRTLHYECIVLVKQFRPPMGGYCIEFPAGLIDDGETPEAAALRELEEETGYKGDIAECSPAVCMDPGLSNC  141 (212)
T ss_dssp             SEEEEEEEEECTTSCCEEEEEEEEEGGGTEEEEECCEEECCTTCCHHHHHHHHHHHHHCCCCEEEEECCCEESCTTTBCC
T ss_pred             CEEEEEEEEeCCCCCcEEEEEEeecCCCCCcEEECCccccCCCCCHHHHHHHHHHHHhCCCccceEEeccEEcCCCccCc
Confidence            44455433  321 24899999765    458999999999999999999999999999998765544333 23344556


Q ss_pred             EEEEEEEEeecCCC----CCCCCCccceeeEEEEeccccccc
Q 020742          180 RVRLYIIAGVRDDT----AFAPQTKKEISEIAWQRLDELQPA  217 (322)
Q Consensus       180 ~~~~y~~~~~~~~~----~~~~~~~~Ei~~~~Wv~ldeL~~~  217 (322)
                      .+++|++.......    .....+++|+.++.|++++++.++
T Consensus       142 ~~~~~~a~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~  183 (212)
T 2dsc_A          142 TIHIVTVTINGDDAENARPKPKPGDGEFVEVISLPKNDLLQR  183 (212)
T ss_dssp             EEEEEEEEEETTSGGGSSCCCCCCTTCCCEEEEEEGGGHHHH
T ss_pred             eEEEEEEEEeCccccccCCCCCCCCCceEEEEEEEHHHHHHH
Confidence            67777765322111    011235678999999999999874

>1q27_A Putative nudix hydrolase DR0079; radiation resistance; NMR {Deinococcus radiodurans} SCOP: d.113.1.2 PDB: 2o5f_A

Probab=99.65  E-value=2.9e-16  Score=133.71  Aligned_cols=105  Identities=14%  Similarity=0.103  Sum_probs=78.2

Q ss_pred             ccEEEEEEEeCCCCEEEEEEeeC-----CCcEE-cccccCCCCCCHHHHHHHHHHHHhCCcccc--eeeeeeee-ecccC
Q 020742          107 VPVTGAIILDETYERCILVKGWK-----GSSWS-FPRGKKNKDEEDHACAIREVQEETGFDVSK--LLNKDEFI-EKIFG  177 (322)
Q Consensus       107 v~v~g~Iv~~~~~~kvLLvrr~~-----~~~w~-fPgG~ie~gEs~~eaA~REv~EETGl~v~~--l~~~~~~~-~~~~~  177 (322)
                      ..++++++++.++ +|||++|..     .|.|+ ||||+++.||++.+||+||++||||+++..  +..+..+. .....
T Consensus        34 ~~~v~v~i~~~~~-~vLl~~r~~~~~~~~g~w~~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~l~~~~~~~~~~~~~  112 (171)
T 1q27_A           34 VRVVNAFLRNSQG-QLWIPRRSPSKSLFPNALDVSVGGAVQSGETYEEAFRREAREELNVEIDALSWRPLASFSPFQTTL  112 (171)
T ss_dssp             CEEEEEEEEETTT-EEEECCSCCSSSCCCCSCCCSEEEECSSSSCHHHHHHHHHHHHHSCTTSSSCEEEEEEECSSSSCC
T ss_pred             ceEEEEEEECCCC-eEEEEEecCCCCCCCCccccccCccccCCCCHHHHHHHHHHHHHCCcccccceEEEEEEeccCCCC
Confidence            4567778887764 999999854     58898 999999999999999999999999999876  45555543 22222


Q ss_pred             eEEEEEEEEEeecCCCCCCCCCccceeeEEEEecccccc
Q 020742          178 QQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQP  216 (322)
Q Consensus       178 ~~~~~~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~  216 (322)
                      ...+++|.+.. .+.  ..+ +..|+.++.|++++++.+
T Consensus       113 ~~~~~~f~~~~-~~~--~~~-~~~E~~~~~W~~~~el~~  147 (171)
T 1q27_A          113 SSFMCVYELRS-DAT--PIF-NPNDISGGEWLTPEHLLA  147 (171)
T ss_dssp             SSEEEEEEEEC-CCC--CCS-CTTTCSCCEEECHHHHHH
T ss_pred             ccEEEEEEEEE-CCc--ccc-CchhhheEEEecHHHHHH
Confidence            23566676654 322  222 457888999999999986

>1x51_A A/G-specific adenine DNA glycosylase; nudix domain, DNA repair, alpha-3 isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.113.1.3

Probab=99.64  E-value=1.5e-15  Score=127.24  Aligned_cols=106  Identities=16%  Similarity=0.228  Sum_probs=71.7

Q ss_pred             ccEEEEEEEeCC--CCEEEEEEeeC----CCcEEcccccCCCCCCHH-HHHHHHHHHHhC-Ccccceeeeeeeee-cccC
Q 020742          107 VPVTGAIILDET--YERCILVKGWK----GSSWSFPRGKKNKDEEDH-ACAIREVQEETG-FDVSKLLNKDEFIE-KIFG  177 (322)
Q Consensus       107 v~v~g~Iv~~~~--~~kvLLvrr~~----~~~w~fPgG~ie~gEs~~-eaA~REv~EETG-l~v~~l~~~~~~~~-~~~~  177 (322)
                      ...+++||.+++  .++|||++|..    .|.|+||||+++.||++. +||+||+.|||| +++.....+..+.. ....
T Consensus        19 ~~~~~~vi~~~~~~~~~vLl~~R~~~~~~~g~w~~PgG~~e~gE~~~~~a~~REl~EE~g~l~~~~~~~l~~~~~~~~~~   98 (155)
T 1x51_A           19 ESSATCVLEQPGALGAQILLVQRPNSGLLAGLWEFPSVTWEPSEQLQRKALLQELQRWAGPLPATHLRHLGEVVHTFSHI   98 (155)
T ss_dssp             EEEEEEEEEEECSSSEEEEEEECCCCSTTCSCEECCEEECCSSHHHHHHHHHHHHHHHSCCCCSTTCEECCCBCCBCSSC
T ss_pred             EEEEEEEEEecCCCCCEEEEEECCCCCCCCceecCCccccCCCCCHHHHHHHHHHHHHhCCcceeeeeecceEEEecCCc
Confidence            334445555431  24999999875    589999999999999996 999999999999 88765444433211 1222


Q ss_pred             eEEEEEEEEEeecCCCCCCCCCccceeeEEEEeccccccc
Q 020742          178 QQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  217 (322)
Q Consensus       178 ~~~~~~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~  217 (322)
                      ...+++|.+....+.    + ...|..++.|++++++.++
T Consensus        99 ~~~~~~~~~~~~~~~----~-~~~e~~~~~W~~~~el~~~  133 (155)
T 1x51_A           99 KLTYQVYGLALEGQT----P-VTTVPPGARWLTQEEFHTA  133 (155)
T ss_dssp             EEEEEEEEEECSSCC----C-CCCCCTTEEEEEHHHHHHS
T ss_pred             cEEEEEEEEEEcCCC----C-CCCCCCccEEccHHHhhhc
Confidence            344566665432221    2 2345678999999999874

>1hzt_A Isopentenyl diphosphate delta-isomerase; dimethylallyl, isoprenoids; 1.45A {Escherichia coli} SCOP: d.113.1.2 PDB: 1hx3_A 1r67_A 1x84_A* 1x83_A* 1ppv_A* 1nfz_A* 1nfs_A* 1ppw_A* 1pvf_A 2veh_A* 2vej_A 2vnp_A* 2vnq_A 2g74_A 2g73_A* 2b2k_A 1i9a_A 1q54_A* 1ow2_A* 3hyq_A*

Probab=99.63  E-value=1.1e-15  Score=132.71  Aligned_cols=105  Identities=10%  Similarity=0.203  Sum_probs=76.7

Q ss_pred             cEEEEEEEeCCCCEEEEEEeeC-----CCcEEc-ccccCCCCCCHHHHHHHHHHHHhCCcccce-eeeeeeee---cc--
Q 020742          108 PVTGAIILDETYERCILVKGWK-----GSSWSF-PRGKKNKDEEDHACAIREVQEETGFDVSKL-LNKDEFIE---KI--  175 (322)
Q Consensus       108 ~v~g~Iv~~~~~~kvLLvrr~~-----~~~w~f-PgG~ie~gEs~~eaA~REv~EETGl~v~~l-~~~~~~~~---~~--  175 (322)
                      .+++++|++.++ +|||++|..     .|.|+| |||+++.||++.+||+||++||||+++..+ ..+..+..   ..  
T Consensus        33 ~~v~~~i~~~~g-~vLl~~R~~~~~~~~g~w~~~PgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~  111 (190)
T 1hzt_A           33 LAFSSWLFNAKG-QLLVTRRALSKKAWPGVWTNSVCGHPQLGESNEDAVIRRCRYELGVEITPPESIYPDFRYRATDPSG  111 (190)
T ss_dssp             ECEEEEEECTTC-CEEEEEECTTCSSSTTCEEESEEECCCTTCCHHHHHHHHHHHHHCCCBSCCEEEETTCEEEEECTTS
T ss_pred             EEEEEEEEcCCC-EEEEEEeCCCCCCCCCcccCcccccCCCCCCHHHHHHHHHHHHHCCCchhhheeeeeEEEEeeCCCC
Confidence            356778887664 899999864     589999 999999999999999999999999998876 44433221   11  


Q ss_pred             c-CeEEEEEEEEEeecCCCCCCCCCccceeeEEEEeccccccc
Q 020742          176 F-GQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  217 (322)
Q Consensus       176 ~-~~~~~~~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~  217 (322)
                      . ......+|.+. ..+.  ..+ +.+|+.++.|++++++.++
T Consensus       112 ~~~~~~~~~f~~~-~~~~--~~~-~~~E~~~~~W~~~~el~~~  150 (190)
T 1hzt_A          112 IVENEVCPVFAAR-TTSA--LQI-NDDEVMDYQWCDLADVLHG  150 (190)
T ss_dssp             CEEEEECCEEEEE-BCSC--CCC-CTTTEEEEEEECHHHHHHH
T ss_pred             CcceEEEEEEEEe-cCCC--CcC-CccceeeEEEecHHHHHHH
Confidence            1 13344566554 4432  222 4678999999999999874

>3fjy_A Probable MUTT1 protein; dimer, protein structure initiative II), NYSGXRC, 11181H, structural genomics; 2.15A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}

Probab=99.62  E-value=1.7e-15  Score=144.87  Aligned_cols=99  Identities=23%  Similarity=0.321  Sum_probs=69.3

Q ss_pred             CCEEEEEEeeCCCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeee--eeeccc------------CeEEEEEE
Q 020742          119 YERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDE--FIEKIF------------GQQRVRLY  184 (322)
Q Consensus       119 ~~kvLLvrr~~~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~--~~~~~~------------~~~~~~~y  184 (322)
                      ..+|||+++...+.|+||||+++.||++.+||+||++||||+++.....+..  +.....            ....+++|
T Consensus        37 ~~~vLLv~r~~~g~W~lPgG~ve~gEs~~~AA~REl~EEtGl~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~f  116 (364)
T 3fjy_A           37 SIEVCIVHRPKYDDWSWPKGKLEQNETHRHAAVREIGEETGSPVKLGPYLCEVEYPLSEEGKKTRHSHDCTADTKHTLYW  116 (364)
T ss_dssp             TEEEEEEEETTTTEEECCEEECCTTCCHHHHHHHHHHHHHSCCEEEEEEEEEEC---------------------CEEEE
T ss_pred             ceEEEEEEcCCCCCEECCcCCCCCCCCHHHHHHHHHHHHhCCeeeeccccceEEEeccCCCcccccccccccCceEEEEE
Confidence            3499999997789999999999999999999999999999999876444432  211110            13455666


Q ss_pred             EEEeecCCC---------CCCCCCccceeeEEEEeccccccc
Q 020742          185 IIAGVRDDT---------AFAPQTKKEISEIAWQRLDELQPA  217 (322)
Q Consensus       185 ~~~~~~~~~---------~~~~~~~~Ei~~~~Wv~ldeL~~~  217 (322)
                      .+....+..         .....+.+|+.++.|++++++.++
T Consensus       117 ~~~~~~~~~~~~l~~~~~~~~~~~~~E~~~~~W~~~~e~~~~  158 (364)
T 3fjy_A          117 MAQPISADDAEHLLDAFGPVHRADVGEINDIVWVSVREARKI  158 (364)
T ss_dssp             EEEECCHHHHHTTHHHHCCCCCCCTTTCCEEEEEEHHHHHHH
T ss_pred             EEEecCCccccccccccCccccCCccceeeeecCcHHHHHHH
Confidence            665443310         111234688999999999999874

>2fml_A MUTT/nudix family protein; structural genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; 2.26A {Enterococcus faecalis} SCOP: a.4.5.68 d.113.1.6

Probab=99.62  E-value=4.6e-15  Score=136.77  Aligned_cols=110  Identities=20%  Similarity=0.350  Sum_probs=78.2

Q ss_pred             CcccccEEEEEEEe--CC--CCEEEEEEeeC---CCcEEcccccCCCCCCHHHHHHHHHHHHhCCccc--ceeeeeeeee
Q 020742          103 YKVRVPVTGAIILD--ET--YERCILVKGWK---GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVS--KLLNKDEFIE  173 (322)
Q Consensus       103 y~~~v~v~g~Iv~~--~~--~~kvLLvrr~~---~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~--~l~~~~~~~~  173 (322)
                      |.....++++||+.  ++  .++|||++|..   .|.|.||||+++.||++.+||+||++||||+++.  .+..+..+..
T Consensus        35 ~~~p~v~v~~vv~~~~~~~~~~~VLLv~R~~~p~~g~W~lPGG~ve~gEs~~~AA~REl~EEtGl~v~~~~l~~l~~~~~  114 (273)
T 2fml_A           35 YEKPSLTVDMVLLCYNKEADQLKVLLIQRKGHPFRNSWALPGGFVNRNESTEDSVLRETKEETGVVISQENIEQLHSFSR  114 (273)
T ss_dssp             CCCCEEEEEEEEEEEETTTTEEEEEEEEECSSSSTTCEECCEEECCTTSCHHHHHHHHHHHHHCCCCCGGGEEEEEEECC
T ss_pred             CCCCceEEEEEEEEEcCCCCCcEEEEEEccCCCCCCcEECCccCCCCCcCHHHHHHHHHHHHHCCCCCcCcEEEEEEEcC
Confidence            66655566666654  32  34899999976   5899999999999999999999999999997655  3555555543


Q ss_pred             ccc---CeEEEEEEEEEeecCCCCCCCCCccceeeEEEEecccccc
Q 020742          174 KIF---GQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQP  216 (322)
Q Consensus       174 ~~~---~~~~~~~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~  216 (322)
                      ...   .+....+|++. +....   ....+|+.++.|++++++..
T Consensus       115 ~~r~~~~~~~~~~y~a~-~~~~~---~~~~~E~~~~~W~~~~e~~~  156 (273)
T 2fml_A          115 PDRDPRGWVVTVSYLAF-IGEEP---LIAGDDAKEVHWFNLERHGQ  156 (273)
T ss_dssp             TTSSTTSSEEEEEEEEE-CCCCC---CCCCTTEEEEEEEEEEEETT
T ss_pred             CCCCCCceEEEEEEEEE-eCCCC---CCCCcceeeEEEEEhhHhhh
Confidence            221   23444555553 43322   34467889999999998654

>2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual domains, hydrolase; HET: AMP; 2.30A {Francisella tularensis} PDB: 2r5w_B

Probab=99.61  E-value=5.7e-15  Score=139.94  Aligned_cols=114  Identities=16%  Similarity=0.232  Sum_probs=79.9

Q ss_pred             CCcccccEEEEEEEeCCCCEEEEEEeeC---CCcEEcccccCCCCCCHHHHHHHHHHHHhCCccccee------eeeeee
Q 020742          102 SYKVRVPVTGAIILDETYERCILVKGWK---GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLL------NKDEFI  172 (322)
Q Consensus       102 ~y~~~v~v~g~Iv~~~~~~kvLLvrr~~---~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~------~~~~~~  172 (322)
                      .|.+...+++++|.++  ++|||++|..   .|.|+||||+++.||++++||+||++||||+++....      ....+.
T Consensus       203 ~~~~~~~~v~~vv~~~--~~vLL~~r~~~~~~g~w~lPgG~ve~gEt~~~aa~REl~EEtGl~v~~~~~~~~~~~~~~~~  280 (352)
T 2qjt_B          203 PFKPNFVTVDALVIVN--DHILMVQRKAHPGKDLWALPGGFLECDETIAQAIIRELFEETNINLTHEQLAIAKRCEKVFD  280 (352)
T ss_dssp             SSCCEEEEEEEEEEET--TEEEEEEESSSSSTTCEECSEEECCTTSCHHHHHHHHHHHHHCCSCCHHHHHHHEEEEEEEC
T ss_pred             CCCCCceEEEEEEEEC--CEEEEEEEcCCCCCCeEECCCCcCCCCCCHHHHHHHHHHHhhCCCcccchhcceeeeeEEec
Confidence            3455566777777765  4999999976   4899999999999999999999999999999987421      112222


Q ss_pred             ecc---cCeEEEEEEEEEeecCCCCCCCCCccceeeEEEEec-cccccc
Q 020742          173 EKI---FGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRL-DELQPA  217 (322)
Q Consensus       173 ~~~---~~~~~~~~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~l-deL~~~  217 (322)
                      ...   .......+|++....+.........+|+.++.|+++ ++++++
T Consensus       281 ~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~E~~~~~W~~~~~el~~~  329 (352)
T 2qjt_B          281 YPDRSVRGRTISHVGLFVFDQWPSLPEINAADDAKDVKWISLGSNIKNI  329 (352)
T ss_dssp             CTTSCTTSEEEEEEEEEEECSCSSCCCCCCCTTEEEEEEEESSHHHHHT
T ss_pred             CCCCCCCccEEEEEEEEEEeCCCCCCccCCCccceEEEEecHHHHHHhh
Confidence            111   122355566665433221122334689999999999 999874

>3gz5_A MUTT/nudix family protein; DNA binding protein, nudix domain, WHTH domain; 2.20A {Shewanella oneidensis} PDB: 3gz6_A* 3gz8_A*

Probab=99.60  E-value=8.4e-16  Score=139.18  Aligned_cols=106  Identities=15%  Similarity=0.220  Sum_probs=75.3

Q ss_pred             cEEEEEEE--eCCCCEEEEEEeeC---CCcEEcccccCCC--CCCHHHHHHHHHHHHhCCcccceeeeeeeeecc---cC
Q 020742          108 PVTGAIIL--DETYERCILVKGWK---GSSWSFPRGKKNK--DEEDHACAIREVQEETGFDVSKLLNKDEFIEKI---FG  177 (322)
Q Consensus       108 ~v~g~Iv~--~~~~~kvLLvrr~~---~~~w~fPgG~ie~--gEs~~eaA~REv~EETGl~v~~l~~~~~~~~~~---~~  177 (322)
                      .++++||+  +++.++|||++|..   .|.|.+|||+++.  |||+.+||+||++||||+++..+..+..+....   ..
T Consensus        23 v~v~~vi~~~~~~~~~vLLv~R~~~~~~g~W~lPGG~ve~~~gEs~~~AA~REl~EEtGl~~~~~~~l~~~~~~~r~~~~  102 (240)
T 3gz5_A           23 LTVDAVLFTYHDQQLKVLLVQRSNHPFLGLWGLPGGFIDETCDESLEQTVLRKLAEKTAVVPPYIEQLCTVGNNSRDARG  102 (240)
T ss_dssp             EEEEEEEEEEETTEEEEEEEECCSSSSTTCEECSEEECCTTTCSBHHHHHHHHHHHHHSSCCSEEEEEEEEEESSSSTTS
T ss_pred             cEEEEEEEEEeCCCcEEEEEECcCCCCCCCEECCccccCCCCCcCHHHHHHHHHHHHHCCCCCceeeEEEeCCCccCCCc
Confidence            34455554  44445999999876   6899999999999  999999999999999999998776666654422   22


Q ss_pred             eEEEEEEEEEeecCCCCCCCCCccceeeEEEEecccccc
Q 020742          178 QQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQP  216 (322)
Q Consensus       178 ~~~~~~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~  216 (322)
                      ......|++. +.... . ....+|+.++.|+++++++.
T Consensus       103 ~~~~~~y~a~-~~~~~-~-~~~~~e~~~~~W~~~~el~~  138 (240)
T 3gz5_A          103 WSVTVCYTAL-MSYQA-C-QIQIASVSDVKWWPLADVLQ  138 (240)
T ss_dssp             CEEEEEEEEE-CCHHH-H-HHHHTTCTTEEEEEHHHHTT
T ss_pred             eEEEEEEEEE-ecccc-c-CCCCCcccceEEecHHHccc
Confidence            3344445443 33211 1 11346788999999999974

>2qjo_A Bifunctional NMN adenylyltransferase/nudix hydrol; two individual domains, hydrolase; HET: APR NAD; 2.60A {Synechocystis SP}

Probab=99.59  E-value=4.4e-15  Score=139.84  Aligned_cols=112  Identities=19%  Similarity=0.220  Sum_probs=74.1

Q ss_pred             CcccccEEEEEEEeCCCCEEEEEEeeC---CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceee------eeeeee
Q 020742          103 YKVRVPVTGAIILDETYERCILVKGWK---GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLN------KDEFIE  173 (322)
Q Consensus       103 y~~~v~v~g~Iv~~~~~~kvLLvrr~~---~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~------~~~~~~  173 (322)
                      |++...+++++|.++  ++|||++|..   .|.|+||||+++.||++.+||+||++||||+++.....      ...+..
T Consensus       199 ~~~~~~~v~~vi~~~--~~vLL~~r~~~~~~g~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~  276 (341)
T 2qjo_A          199 YAPTFITTDAVVVQA--GHVLMVRRQAKPGLGLIALPGGFIKQNETLVEGMLRELKEETRLKVPLPVLRGSIVDSHVFDA  276 (341)
T ss_dssp             SCCCEEEEEEEEEET--TEEEEEECCSSSSTTCEECSEEECCTTSCHHHHHHHHHHHHHCCSSCHHHHHHTEEEEEEECC
T ss_pred             CCCCceEEEEEEEeC--CEEEEEEecCCCCCCeEECCCCcCCCCCCHHHHHHHHHhhhhCCccccccccccccceEEEeC
Confidence            344455677777765  3999999976   68999999999999999999999999999999875322      122221


Q ss_pred             cc---cCeEEEEEEEEEeecCCCCCCCCCccceeeEEEEeccccccc
Q 020742          174 KI---FGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  217 (322)
Q Consensus       174 ~~---~~~~~~~~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~  217 (322)
                      ..   .++....+|++....+. .....+.+|+.++.|+++++++++
T Consensus       277 ~~~~~~~~~~~~~f~~~~~~~~-~~~~~~~~e~~~~~W~~~~el~~~  322 (341)
T 2qjo_A          277 PGRSLRGRTITHAYFIQLPGGE-LPAVKGGDDAQKAWWMSLADLYAQ  322 (341)
T ss_dssp             TTSCTTSCEEEEEEEEECCSSS-CCCCC------CEEEEEHHHHHHT
T ss_pred             CCCCCCCcEEEEEEEEEecCCC-cCccCCCCceeeEEEeeHHHHhhh
Confidence            11   12344556666543322 112235688999999999999874

>3e57_A Uncharacterized protein TM1382; structural genomics, nudix hydrolase, PSI-2, protein structure initiative; 1.89A {Thermotoga maritima}

Probab=99.57  E-value=1.7e-15  Score=134.49  Aligned_cols=102  Identities=19%  Similarity=0.196  Sum_probs=68.8

Q ss_pred             EEEEEEEeCCCCEEEEEEeeC-C------CcEEc-ccccCCCCCC--H----HHHHHHHHHHHhCCcccceeeeeeeee-
Q 020742          109 VTGAIILDETYERCILVKGWK-G------SSWSF-PRGKKNKDEE--D----HACAIREVQEETGFDVSKLLNKDEFIE-  173 (322)
Q Consensus       109 v~g~Iv~~~~~~kvLLvrr~~-~------~~w~f-PgG~ie~gEs--~----~eaA~REv~EETGl~v~~l~~~~~~~~-  173 (322)
                      +..+||.++  +++||++|.. +      +.|++ ||||||.||+  +    .+||+||++||||+++..+..++.+.. 
T Consensus        70 i~~~II~~~--grvLl~~R~~~~~e~~~~g~w~~gPGGhVE~GEs~~p~EtleeAa~REl~EEtGl~v~~~~~ig~~~~~  147 (211)
T 3e57_A           70 IPYVVIMDG--DRVLITKRTTKQSEKRLHNLYSLGIGGHVREGDGATPREAFLKGLEREVNEEVDVSLRELEFLGLINSS  147 (211)
T ss_dssp             EEEEEEEET--TEEEEEEC------------CBSSEECCCBGGGCSSHHHHHHHHHHHHHHHHEEEEEEEEEEEEEEECC
T ss_pred             EEEEEEEEC--CEEEEEEECCCCCcccccCCcccccceEEeCCCCCCchhhHHHHHHHHHHHHhCCeeeccEEEEEEecc
Confidence            334566554  3999999965 2      68999 9999999999  4    999999999999998877555544322 


Q ss_pred             -cccC-eEEEEEEEEEeecCCCCCCCCCccceeeEEEEeccccccc
Q 020742          174 -KIFG-QQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  217 (322)
Q Consensus       174 -~~~~-~~~~~~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~  217 (322)
                       ...+ .....+|.+.....    .+ ...|..++.|+++++|+++
T Consensus       148 ~~~~~~~~l~~~f~~~~~~g----~~-~~~E~~~~~W~~~~eL~~~  188 (211)
T 3e57_A          148 TTEVSRVHLGALFLGRGKFF----SV-KEKDLFEWELIKLEELEKF  188 (211)
T ss_dssp             SSHHHHTEEEEEEEEEEEEE----EE-SCTTTCEEEEEEHHHHHHH
T ss_pred             CCCCCeEEEEEEEEEEeCCc----ee-CCCCeEEEEEEEHHHHHHh
Confidence             1112 23334566654422    23 3456788999999999874

>1u20_A U8 snoRNA-binding protein X29; modified nudix hydrolase fold, hydrolase; 2.10A {Xenopus laevis} SCOP: d.113.1.1 PDB: 2a8t_A* 2a8q_A* 2a8p_A* 2a8r_A* 2a8s_A*

Probab=99.49  E-value=2.5e-14  Score=126.91  Aligned_cols=101  Identities=13%  Similarity=0.150  Sum_probs=70.7

Q ss_pred             EEeCCCCEEEEEEeeCCCcEEcccccCCCCC-CHHHHHHHHHHHHhCCccccee-----eeeeeee-cccCeEEEEEEEE
Q 020742          114 ILDETYERCILVKGWKGSSWSFPRGKKNKDE-EDHACAIREVQEETGFDVSKLL-----NKDEFIE-KIFGQQRVRLYII  186 (322)
Q Consensus       114 v~~~~~~kvLLvrr~~~~~w~fPgG~ie~gE-s~~eaA~REv~EETGl~v~~l~-----~~~~~~~-~~~~~~~~~~y~~  186 (322)
                      +.+++ +++||++|. .|.|+||||+++.|| ++.+||+||++||||+.+....     .+..... .. ....+++|.+
T Consensus        51 i~~~~-~~vLl~~r~-~g~w~~PGG~ve~gE~t~~~aa~REl~EEtGl~~~~~~l~~~~~~~~~~~~~~-~~~~~~~f~~  127 (212)
T 1u20_A           51 RVPIR-RVLLMMMRF-DGRLGFPGGFVDTRDISLEEGLKRELEEELGPALATVEVTEDDYRSSQVREHP-QKCVTHFYIK  127 (212)
T ss_dssp             TEECC-EEEEEEEET-TSCEECSEEEECTTTSCHHHHHHHHHHHHHCGGGGGCCCCGGGEEEEEEECTT-SCEEEEEEEE
T ss_pred             EEecC-CEEEEEEeC-CCeEECCCcccCCCCCCHHHHHHHHHHHHHCCCccccceeeeeEEEeccccCC-CcEEEEEEEE
Confidence            34555 389999885 699999999999999 9999999999999999987532     2232221 12 3566777776


Q ss_pred             EeecCCCC------CC-CCCccceeeEEEEeccccccc
Q 020742          187 AGVRDDTA------FA-PQTKKEISEIAWQRLDELQPA  217 (322)
Q Consensus       187 ~~~~~~~~------~~-~~~~~Ei~~~~Wv~ldeL~~~  217 (322)
                      ....+...      .. .....|+.++.|++++++.+.
T Consensus       128 ~~~~~~~~~~e~~~~~~~~~~~Ev~~~~wvpl~el~~~  165 (212)
T 1u20_A          128 ELKLEEIERIEAEAVNAKDHGLEVMGLIRVPLYTLRDR  165 (212)
T ss_dssp             ECCHHHHHHHHHHHTTSTTBTTTEEEEEECCCSBCTTS
T ss_pred             EecCCCcccccccccccccCCcceEEEEEEEHHHhhhh
Confidence            54322100      00 123468889999999999763

>1q33_A Pyrophosphatase, ADP-ribose pyrophosphatase; nudix fold, hydrolase; HET: BGC; 1.81A {Homo sapiens} SCOP: d.113.1.1 PDB: 1qvj_A*

Probab=99.46  E-value=6.7e-13  Score=123.48  Aligned_cols=97  Identities=13%  Similarity=0.165  Sum_probs=64.4

Q ss_pred             EEEEEEeeCCCcEEcccccCCCCCCHHHHHHHHHHHHhCCccc-----------ceeeee------eeee---cc-c--C
Q 020742          121 RCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVS-----------KLLNKD------EFIE---KI-F--G  177 (322)
Q Consensus       121 kvLLvrr~~~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~-----------~l~~~~------~~~~---~~-~--~  177 (322)
                      +|||++|...|.|.||||+|+.||++.+||+||++||||+.+.           .+..+.      .|..   .. .  .
T Consensus       140 ~vLl~~r~~~g~W~lPGG~Ve~GEs~~eAA~REl~EETGl~~~~~~~~~~~l~~~l~~l~~~~g~~vy~~~~~dpr~~d~  219 (292)
T 1q33_A          140 QFVAIKRKDCGEWAIPGGMVDPGEKISATLKREFGEEALNSLQKTSAEKREIEEKLHKLFSQDHLVIYKGYVDDPRNTDN  219 (292)
T ss_dssp             EEEEEECTTTCSEECCCEECCTTCCHHHHHHHHHHHHHSCGGGSCSSHHHHHHHHHHHHTTTSEEEEEEEECCCTTCCSS
T ss_pred             EEEEEEecCCCcEeCCCcccCCCCCHHHHHHHHHHHHhCCccccccccchhhHHHHHHHhhcccceeecccccCCCCCcc
Confidence            7999999878999999999999999999999999999999831           111111      1111   11 1  1


Q ss_pred             -eEEEEEEEEEeecCCC--CCCCCCccceeeEEEEeccccccc
Q 020742          178 -QQRVRLYIIAGVRDDT--AFAPQTKKEISEIAWQRLDELQPA  217 (322)
Q Consensus       178 -~~~~~~y~~~~~~~~~--~~~~~~~~Ei~~~~Wv~ldeL~~~  217 (322)
                       .....+|.+....+..  .......+|+.++.|+++++++.+
T Consensus       220 ~~~~~~~f~~~~~~g~~~~~~~~~~~~E~~~~~W~~~del~~L  262 (292)
T 1q33_A          220 AWMETEAVNYHDETGEIMDNLMLEAGDDAGKVKWVDINDKLKL  262 (292)
T ss_dssp             EEEEEEEEEEEESSSTTTTTCCCCCCTTCSEEEEEECCTTCCC
T ss_pred             cEEEEEEEEEEeCCCccccccccCCCCccceEEEEEcccCccc
Confidence             2223344443222211  112345678999999999999864

>2dho_A Isopentenyl-diphosphate delta-isomerase 1; alpha/beta protein; 1.60A {Homo sapiens} PDB: 2i6k_A* 2icj_A 2ick_A*

Probab=99.42  E-value=9e-13  Score=118.90  Aligned_cols=106  Identities=9%  Similarity=0.141  Sum_probs=75.4

Q ss_pred             ccEEEEEEEeCCCCEEEEEEeeC-----CCcEEcc-cccCCCC------CCH---HHHHHHHHHHHhCCcccc-----ee
Q 020742          107 VPVTGAIILDETYERCILVKGWK-----GSSWSFP-RGKKNKD------EED---HACAIREVQEETGFDVSK-----LL  166 (322)
Q Consensus       107 v~v~g~Iv~~~~~~kvLLvrr~~-----~~~w~fP-gG~ie~g------Es~---~eaA~REv~EETGl~v~~-----l~  166 (322)
                      ..+++++|++.++ ++||+||..     +|.|++| ||+++.|      |++   .+||+||++||||+.+..     +.
T Consensus        59 h~av~v~v~~~~g-~lLLq~R~~~k~~~pg~W~~p~gG~v~~Ge~E~~~E~~~~~~~Aa~REl~EElGi~~~~v~~~~l~  137 (235)
T 2dho_A           59 HRAFSVFLFNTEN-KLLLQQRSDAKITFPGCFTNTCCSHPLSNPAELEESDALGVRRAAQRRLKAELGIPLEEVPPEEIN  137 (235)
T ss_dssp             EEEEEEEEECTTC-CEEEEEECTTCSSSTTCEESSEEECCBSSHHHHCCGGGHHHHHHHHHHHHHHHCCCGGGSCGGGSE
T ss_pred             EEEEEEEEEcCCC-EEEEEEecCcCCCCCCcEEeccCceecCCCcccccccchhHHHHHHHHHHHHHCCCccccChhhcE
Confidence            4567788888764 999999864     5899999 5999999      884   999999999999998752     34


Q ss_pred             eeeeee--ecc----cCeEEEEEEEEEeecCCCCCCCCCccceeeEEEEeccccccc
Q 020742          167 NKDEFI--EKI----FGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  217 (322)
Q Consensus       167 ~~~~~~--~~~----~~~~~~~~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~  217 (322)
                      .+..+.  ...    ..+...++|++.. ..  .+.+ +++|+.+++|++++++.++
T Consensus       138 ~l~~~~y~~~~~~~~~~~e~~~vf~~~~-~~--~~~~-~~~Ev~~~~wv~~~el~~~  190 (235)
T 2dho_A          138 YLTRIHYKAQSDGIWGEHEIDYILLVRM-NV--TLNP-DPNEIKSYCYVSKEELKEL  190 (235)
T ss_dssp             EEEEEEEEEECSSSBEEEEEEEEEEEEC-CC--CCCC-CTTTEEEEEEECHHHHHHH
T ss_pred             EEEEEEEeccCCCccceeEEEEEEEEEE-CC--CCcC-ChHHEEEEEEEcHHHHHHH
Confidence            444332  111    1133456676653 22  2223 4689999999999999873

>2pny_A Isopentenyl-diphosphate delta-isomerase 2; carotenoid biosynthesis, cholesterol biosynthesis, isomerase isoprene biosynthesis, lipid synthesis; HET: GOL; 1.81A {Homo sapiens}

Probab=99.40  E-value=1.1e-12  Score=119.13  Aligned_cols=106  Identities=12%  Similarity=0.149  Sum_probs=75.6

Q ss_pred             ccEEEEEEEeCCCCEEEEEEeeC-----CCcEEccc-ccCCCC------CCH---HHHHHHHHHHHhCCcccc-----ee
Q 020742          107 VPVTGAIILDETYERCILVKGWK-----GSSWSFPR-GKKNKD------EED---HACAIREVQEETGFDVSK-----LL  166 (322)
Q Consensus       107 v~v~g~Iv~~~~~~kvLLvrr~~-----~~~w~fPg-G~ie~g------Es~---~eaA~REv~EETGl~v~~-----l~  166 (322)
                      ..+++++|++.++ ++||+||..     +|.|++|+ |+++.|      |++   .+||+||++||||+.+..     +.
T Consensus        70 h~av~v~v~~~~g-~lLLqrRs~~K~~~pG~W~~p~gG~v~~G~~E~~~Et~~~~~eAA~REl~EElGi~~~~v~~~~l~  148 (246)
T 2pny_A           70 HRAFSVVLFNTKN-RILIQQRSDTKVTFPGYFTDSCSSHPLYNPAELEEKDAIGVRRAAQRRLQAELGIPGEQISPEDIV  148 (246)
T ss_dssp             EEEEEEEEECTTC-CEEEEEECTTCSSSTTCBCCSEEECCBSSHHHHCCGGGHHHHHHHHHHHHHHHCCCTTTCCGGGSE
T ss_pred             EEEEEEEEEeCCC-EEEEEEecCCCCCCCCceEeccCceeccCCcccccccchhHHHHHHHHHHHHHCCCccccCccccE
Confidence            3567778888764 899999864     68999995 999999      887   999999999999998752     33


Q ss_pred             eeeeee--ecc----cCeEEEEEEEEEeecCCCCCCCCCccceeeEEEEeccccccc
Q 020742          167 NKDEFI--EKI----FGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  217 (322)
Q Consensus       167 ~~~~~~--~~~----~~~~~~~~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~  217 (322)
                      .+..+.  ...    ..+...++|++.. ..  .+.+ +++|+.+++|++++++.++
T Consensus       149 ~l~~~~y~~~~~~~~~~~e~~~vf~~~~-~~--~~~~-~~~Ev~~~~wv~~eel~~~  201 (246)
T 2pny_A          149 FMTIYHHKAKSDRIWGEHEICYLLLVRK-NV--TLNP-DPSETKSILYLSQEELWEL  201 (246)
T ss_dssp             EEEEEEEEEESSSSBEEEEEEEEEEEEC-CC--CCCC-CTTTEEEEEEECHHHHHHH
T ss_pred             EEEEEEEEecCCCceeeeEEEEEEEEEE-CC--CCCC-ChHHeeEEEEEeHHHHHHH
Confidence            444322  111    1133456666643 22  2233 4689999999999999873

>2xsq_A U8 snoRNA-decapping enzyme; hydrolase, mRNA decapping, mRNA turnover, structural genomic consortium, SGC; HET: IMP; 1.72A {Homo sapiens} PDB: 3cou_A 3mgm_A

Probab=99.36  E-value=7.7e-13  Score=117.98  Aligned_cols=94  Identities=15%  Similarity=0.118  Sum_probs=62.5

Q ss_pred             EEEEEEeeCCCcEEcccccCCCCC-CHHHHHHHHHHHHhCCcccc--eeeeeeeee-ccc-CeEEEEEEEEEeecCCCC-
Q 020742          121 RCILVKGWKGSSWSFPRGKKNKDE-EDHACAIREVQEETGFDVSK--LLNKDEFIE-KIF-GQQRVRLYIIAGVRDDTA-  194 (322)
Q Consensus       121 kvLLvrr~~~~~w~fPgG~ie~gE-s~~eaA~REv~EETGl~v~~--l~~~~~~~~-~~~-~~~~~~~y~~~~~~~~~~-  194 (322)
                      ++||+.+. .+.|+||||+++.|| ++.+||+||++||||+.+..  +..+..+.. ... ......+| ++.+..... 
T Consensus        66 ~~ll~~r~-~g~w~lPGG~ve~gE~t~~eaa~REl~EEtGl~~~~~~l~~l~~~~~~~~~~~~~~~~~f-~~~l~~~~~~  143 (217)
T 2xsq_A           66 AILMQMRF-DGRLGFPGGFVDTQDRSLEDGLNRELREELGEAAAAFRVERTDYRSSHVGSGPRVVAHFY-AKRLTLEELL  143 (217)
T ss_dssp             EEEEEEET-TSCEECSEEECCTTCSSHHHHHHHHHHHHHCGGGGGCCCCGGGEEEEEECSSSSEEEEEE-EEECCHHHHH
T ss_pred             cEEEEEcc-CCeEECCceecCCCCCCHHHHHHHHHHHHHCCCCccceeEEEEEEeecCCCCCeEEEEEE-EEEeccccce
Confidence            46665554 689999999999999 99999999999999998874  322222221 111 23344444 444432111 


Q ss_pred             ------C-CCCCccceeeEEEEecccccc
Q 020742          195 ------F-APQTKKEISEIAWQRLDELQP  216 (322)
Q Consensus       195 ------~-~~~~~~Ei~~~~Wv~ldeL~~  216 (322)
                            . ......|..++.|+|++++.+
T Consensus       144 ~~e~~~~~~~~~~~E~~~v~~vPl~~l~d  172 (217)
T 2xsq_A          144 AVEAGATRAKDHGLEVLGLVRVPLYTLRD  172 (217)
T ss_dssp             HHHHHGGGSTTBTTTEEEEEECCCSBCTT
T ss_pred             ecccccccccccCCceeeEEEEEHHHhhh
Confidence                  0 122356889999999999974

>3qsj_A Nudix hydrolase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.70A {Alicyclobacillus acidocaldarius subsp}

Probab=99.30  E-value=1.7e-11  Score=110.29  Aligned_cols=108  Identities=13%  Similarity=0.178  Sum_probs=71.3

Q ss_pred             cEEEEEEEeCC-C--CEEEEEEeeC-----CCcEEcccccCCCCCC--------------------HHHHHHHHHHHHhC
Q 020742          108 PVTGAIILDET-Y--ERCILVKGWK-----GSSWSFPRGKKNKDEE--------------------DHACAIREVQEETG  159 (322)
Q Consensus       108 ~v~g~Iv~~~~-~--~kvLLvrr~~-----~~~w~fPgG~ie~gEs--------------------~~eaA~REv~EETG  159 (322)
                      +.+++|+++++ .  .+|||+||..     .|.|.||||+|+.+|+                    +..||+||++||||
T Consensus         9 ~aA~lill~~~~~g~~~vLl~~R~~~~~~~~g~~~fPGG~vd~~d~~~~~~~~g~~~~~~~~~~~a~~~aAiRE~~EE~G   88 (232)
T 3qsj_A            9 KAATLVVIRDGANKDIEVLVVRRAKTMRFLPGFVAFPGGAADPSDAEMAKRAFGRPVCAEDDDDPALAVTALRETAEEIG   88 (232)
T ss_dssp             EEEEEEEEEECGGGCEEEEEEEECTTCSSSTTCEECSEEECCHHHHHHHHTCBSCCBTCCSTTHHHHHHHHHHHHHHHHS
T ss_pred             ceEEEEEEEcCCCCCeEEEEEEccCCCCCCCCcEECCceeEecCCCCchhhhcccccccccchhhHHHHHHHHHHHHHhC
Confidence            45556655543 2  2899999976     5899999999999887                    48999999999999


Q ss_pred             Ccccce------------------------------------------eeeeeeeecc-cCeEEEEEEEEEeecCCCCCC
Q 020742          160 FDVSKL------------------------------------------LNKDEFIEKI-FGQQRVRLYIIAGVRDDTAFA  196 (322)
Q Consensus       160 l~v~~l------------------------------------------~~~~~~~~~~-~~~~~~~~y~~~~~~~~~~~~  196 (322)
                      +.+..-                                          .....++.+. .....-..|++..++.. ...
T Consensus        89 l~l~~~~~~~~~~~~~~~~~~r~~l~~~~~~f~~~~~~~~l~~~~~~L~~~arWiTP~~~~rRfdT~FFla~lpq~-~~v  167 (232)
T 3qsj_A           89 WLLAVRDGEGTKMDTPLAPDEQADLCKGGDALSAWLSARGLAFDLGLLRRIGRFVTPPTQPVRFDTRFFLCVGQHL-GEP  167 (232)
T ss_dssp             CCCSEECTTCCBCCSCCCHHHHHHHTTCTTHHHHHHHTTTCEEBGGGCEEEEEEECCTTSSSEEEEEEEEEECSSC-CCC
T ss_pred             ceeccccccCcccChhhHHHHHHHHHcCchhHHHHHHHCCCccChhhceeeEEEcCCcCCceeEEEEEEEEECCCC-CCC
Confidence            976421                                          1111222221 22333334444445532 111


Q ss_pred             CCCccceeeEEEEecccccc
Q 020742          197 PQTKKEISEIAWQRLDELQP  216 (322)
Q Consensus       197 ~~~~~Ei~~~~Wv~ldeL~~  216 (322)
                      ..+..|+.++.|++++++.+
T Consensus       168 ~~d~~E~~~~~W~~p~eal~  187 (232)
T 3qsj_A          168 RLHGAELDAALWTPARDMLT  187 (232)
T ss_dssp             CCCSSSEEEEEEEEHHHHHH
T ss_pred             CCCCCceEEEEEEcHHHHHH
Confidence            33678999999999999976

>3bho_A Cleavage and polyadenylation specificity factor subunit 5; CPSF5, RNA processing, cleavage factor, diadenosine tetraphosphate, mRNA processing; HET: B4P; 1.80A {Homo sapiens} PDB: 3bap_A 3mdg_A 3mdi_A 2cl3_A 3n9u_A 3q2s_A 3q2t_A 2j8q_A 3p5t_A 3p6y_A

Probab=99.22  E-value=4.4e-11  Score=104.55  Aligned_cols=67  Identities=21%  Similarity=0.319  Sum_probs=58.0

Q ss_pred             hhHHHhhhcCCcccccEEEEEEEeCCC-CEEEEEEeeCCCcEEcccccCCCCCCHHHHHHHHHHHHhCC
Q 020742           93 IDDIFKDFTSYKVRVPVTGAIILDETY-ERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGF  160 (322)
Q Consensus        93 ~~~~~~~~~~y~~~v~v~g~Iv~~~~~-~kvLLvrr~~~~~w~fPgG~ie~gEs~~eaA~REv~EETGl  160 (322)
                      +..+..+|.+|..++.|+|+|++++++ .+|||+|+. .+.|.||||+++.||++++|++||+.||+|.
T Consensus        45 ~~rl~~~y~~~g~R~sV~avil~~~~~~phVLLlq~~-~~~f~LPGGkle~gE~~~eaL~REL~EELg~  112 (208)
T 3bho_A           45 FQRMREEFDKIGMRRTVEGVLIVHEHRLPHVLLLQLG-TTFFKLPGGELNPGEDEVEGLKRLMTEILGR  112 (208)
T ss_dssp             HHHHHHHHHHHCSEEEEEEEEEEEETTEEEEEEEEEE-TTEEECSEEECCTTCCHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHhhCCceEEEEEEEEcCCCCcEEEEEEcC-CCcEECCCcccCCCCCHHHHHHHHHHHHhCC
Confidence            455566778899999999999987653 379999984 5799999999999999999999999999995

>3dup_A MUTT/nudix family protein; nudix superfamily hydrolase, hydrolase 3 family, structural protein structure initiative, PSI; HET: MSE; 1.80A {Rhodospirillum rubrum atcc 11170}

Probab=99.15  E-value=2.8e-10  Score=105.92  Aligned_cols=107  Identities=12%  Similarity=0.020  Sum_probs=73.3

Q ss_pred             EEEEEEEeCCC--CEEEEEEeeC-----CCcE-EcccccCCCCCCHHHHHHHHHHHHhCCcccce---eeeee--eee--
Q 020742          109 VTGAIILDETY--ERCILVKGWK-----GSSW-SFPRGKKNKDEEDHACAIREVQEETGFDVSKL---LNKDE--FIE--  173 (322)
Q Consensus       109 v~g~Iv~~~~~--~kvLLvrr~~-----~~~w-~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l---~~~~~--~~~--  173 (322)
                      ++-+.+++.++  .++||.||..     +|.| .+++|+++.||++.+||+||+.||+|+.+..+   ...+.  |..  
T Consensus       120 ~vh~~~~~~~~~~~~lll~rRs~~K~~~PG~wd~svaG~i~~GEs~~eaA~REl~EElGI~~~~~~~l~~~g~i~y~~~~  199 (300)
T 3dup_A          120 GVHLNGYVGAGADLHLWIGRRSPDKSVAPGKLDNMVAGGQPADLSLRQNLIKECAEEADLPEALARQAIPVGAITYCMES  199 (300)
T ss_dssp             EEEEEEEESCGGGCEEEEEEECTTCSSSTTCEEESEEEECCTTSCHHHHHHHHHHHHHCCCHHHHTTCEEEEEEEEEEEE
T ss_pred             EEEEEEEEecCCeeEEEEEeCCCcccCCCCccccccccCCCCCCCHHHHHHHHHHHHhCCChhhhhhccccceEEEEEec
Confidence            34445555542  2899999865     7999 58999999999999999999999999987532   22222  211  


Q ss_pred             -cccCeEEEEEEEEEeecCCCCCCCCCccceeeEEEEeccccccc
Q 020742          174 -KIFGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  217 (322)
Q Consensus       174 -~~~~~~~~~~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~  217 (322)
                       .+......++|.+. ++.+..+.+ +++|+.++.|++++++.++
T Consensus       200 ~~G~~~E~~~vy~~~-l~~~~~p~~-~~~EV~~~~~v~~~El~~~  242 (300)
T 3dup_A          200 PAGIKPDTLFLYDLA-LPEDFRPHN-TDGEMADFMLWPAAKVVEA  242 (300)
T ss_dssp             TTEEEEEEEEEEEEE-CCTTCCCCC-TTSSEEEEEEEEHHHHHHH
T ss_pred             CCCeEEEEEEEEEEE-ecCCCcCCC-CchHhheEEEECHHHHHHH
Confidence             11233445556543 333333333 5789999999999999874

>3rh7_A Hypothetical oxidoreductase; FMN-binding split barrel, nudix, structural genomics, joint for structural genomics, JCSG; HET: FMN; 3.00A {Sinorhizobium meliloti}

Probab=99.13  E-value=1.3e-10  Score=109.40  Aligned_cols=115  Identities=14%  Similarity=0.099  Sum_probs=74.0

Q ss_pred             cEEEEEEEeCCCCEEEEEEeeCCCcEEcccccCCCCCCHHHHHHHHHHHHh-CCcccceeeeeeeeecccCeEEEEEEEE
Q 020742          108 PVTGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEET-GFDVSKLLNKDEFIEKIFGQQRVRLYII  186 (322)
Q Consensus       108 ~v~g~Iv~~~~~~kvLLvrr~~~~~w~fPgG~ie~gEs~~eaA~REv~EET-Gl~v~~l~~~~~~~~~~~~~~~~~~y~~  186 (322)
                      .++++|+.+++  +|||+  .+.| |.+|||.++.  +..++|+||++||| |++++....+..|-.... ++...+|.+
T Consensus       184 ~~vgaii~~~g--~vLL~--~~~G-W~LPG~~~~~--~~~~~a~RE~~EEttGl~v~~~~L~~v~~~~~~-~~~~i~f~~  255 (321)
T 3rh7_A          184 IRLGAVLEQQG--AVFLA--GNET-LSLPNCTVEG--GDPARTLAAYLEQLTGLNVTIGFLYSVYEDKSD-GRQNIVYHA  255 (321)
T ss_dssp             EEEEEEEESSS--CEEEB--CSSE-EBCCEEEESS--SCHHHHHHHHHHHHHSSCEEEEEEEEEEECTTT-CCEEEEEEE
T ss_pred             ceEEEEEEECC--EEEEe--eCCC-ccCCcccCCC--ChhHHHHHHHHHHhcCCEEeeceEEEEEEcCCC-ceEEEEEEE
Confidence            35678887763  89999  4467 9999886654  44469999999997 999986433333322222 233335555


Q ss_pred             EeecCCCCCCCCCccceeeEEEEecccccccCCCccchhhhhhhhhhhhh-hHHHHHHHHHhcCCCCCC
Q 020742          187 AGVRDDTAFAPQTKKEISEIAWQRLDELQPASDDVISHGVTGLKLYMVAP-FLASLKKWISAHKPSIAP  254 (322)
Q Consensus       187 ~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~~~~~~~~~~~~~~~~~v~p-f~~~L~~wi~~~~~~~~~  254 (322)
                      ....+.          ..+++||++++|+...-              ..| .-..|++|+++++...++
T Consensus       256 ~~~~g~----------~~e~~~f~~~elp~~~~--------------~~~~~~~~L~~y~~e~~~g~f~  300 (321)
T 3rh7_A          256 LASDGA----------PRQGRFLRPAELAAAKF--------------SSSATADIINRFVLESSIGNFG  300 (321)
T ss_dssp             EECSSC----------CSSSEEECHHHHTTCEE--------------SSHHHHHHHHHHHHTTSCSSCC
T ss_pred             EeCCCC----------eeeeEEECHHHCCCccc--------------CCHHHHHHHHHHHHHhhcCCCC
Confidence            433321          16789999999998521              112 235678899887765443

>3kvh_A Protein syndesmos; NUDT16-like, NUDT16L1, nudix, RNA regulation, RNA structural genomics consortium, SGC, RNA degradation, RNA B protein; 1.70A {Homo sapiens}

Probab=98.84  E-value=2.1e-09  Score=93.02  Aligned_cols=94  Identities=10%  Similarity=0.028  Sum_probs=58.5

Q ss_pred             EEEEEeeCCCcEEcccccCCCCC-CHHHHHHHHHHHHhCC-cccceeeeeeeeecccCeEEEEEEEEEeecCCCC-----
Q 020742          122 CILVKGWKGSSWSFPRGKKNKDE-EDHACAIREVQEETGF-DVSKLLNKDEFIEKIFGQQRVRLYIIAGVRDDTA-----  194 (322)
Q Consensus       122 vLLvrr~~~~~w~fPgG~ie~gE-s~~eaA~REv~EETGl-~v~~l~~~~~~~~~~~~~~~~~~y~~~~~~~~~~-----  194 (322)
                      |||..|. +|.|+||||+||.|| |+++|+.||+.||+|+ .+.....+..+..........++|.+....++..     
T Consensus        46 iLmQ~R~-~G~weFPGGkVe~gE~t~e~aL~REl~EElg~~~V~~~~y~~s~~~~yp~~V~LHfY~crl~~Ge~~~lE~~  124 (214)
T 3kvh_A           46 VLMQMRF-DGLLGFPGGFVDRRFWSLEDGLNRVLGLGLGCLRLTEADYLSSHLTEGPHRVVAHLYARQLTLEQLHAVEIS  124 (214)
T ss_dssp             EEEEEET-TSCEECSEEEECTTTCCHHHHHHHSCCSCC---CCCGGGEEEEEEC----CEEEEEEEEECCHHHHHHHHHH
T ss_pred             EEEeeee-CCEEeCCCccCCCCCCCHHHHHHHHHHHhhCCeeeeeeeeEEEEeccCCCEEEEEEEEEEeeCCccchhhhc
Confidence            4444444 799999999999999 9999999999999996 4554333333221111245667777764432210     


Q ss_pred             -CCCC-CccceeeEEEEecccccc
Q 020742          195 -FAPQ-TKKEISEIAWQRLDELQP  216 (322)
Q Consensus       195 -~~~~-~~~Ei~~~~Wv~ldeL~~  216 (322)
                       .... -..|+....-||+-.+.+
T Consensus       125 A~~A~d~G~EvlGlvRVPlytl~D  148 (214)
T 3kvh_A          125 AVHSRDHGLEVLGLVRVPLYTQKD  148 (214)
T ss_dssp             HHTSTTBTTTEEEEEEECCCBCTT
T ss_pred             ccCCcccCceecceEEeeeEEecc
Confidence             1111 235778888899877754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	322
d2a6ta2	151	d.113.1.7 (A:95-245) mRNA decapping enzyme Dcp2p c	9e-37
d2qklb1	90	a.242.1.1 (B:2-91) mRNA decapping enzyme Dcp2p, N-	9e-35
d1sjya_	158	d.113.1.1 (A:) Hypothetical protein DR1025 {Deinoc	4e-14
d2fvva1	135	d.113.1.1 (A:8-142) Diphosphoinositol polyphosphat	7e-13
d2azwa1	147	d.113.1.1 (A:2-148) Hypothetical protein EF1141 {E	2e-12
d1vcda1	126	d.113.1.1 (A:1-126) AP6A hydrolase Ndx1 {Thermus t	1e-11
d1k2ea_	152	d.113.1.1 (A:) Hypothetical protein PAE3301 {Archa	2e-10
d1irya_	156	d.113.1.1 (A:) 7,8-dihydro-8-oxoguanine triphospha	2e-10
d2b0va1	146	d.113.1.1 (A:4-149) Hypothetical protein NE0184 {N	2e-08
d2b06a1	155	d.113.1.1 (A:1-155) Hypothetical protein SP1235 (s	7e-08
d1ryaa_	160	d.113.1.5 (A:) GDP-mannose mannosyl hydrolase NudD	2e-07
d1xsba_	153	d.113.1.1 (A:) Diadenosine tetraphosphate hydrolas	2e-07
d1vk6a2	131	d.113.1.4 (A:126-256) NADH pyrophosphatase {Escher	2e-07
d2fkba1	161	d.113.1.2 (A:8-168) Hypothetical protein YfcD {Esc	5e-07
d1v8ya_	158	d.113.1.1 (A:) ADP-ribose pyrophosphatase {Thermus	2e-06
d1ktga_	137	d.113.1.1 (A:) Diadenosine tetraphosphate hydrolas	3e-06
d1vhza_	186	d.113.1.1 (A:) ADP compounds hydrolase NudE {Esche	5e-06
d1puna_	129	d.113.1.1 (A:) Nucleoside triphosphate pyrophospho	9e-06
d2fmla2	202	d.113.1.6 (A:3-204) Hypothetical protein EF2700, N	2e-05
d2o5fa1	162	d.113.1.2 (A:7-168) Hypothetical protein DR0079 {D	2e-05
d1nqza_	187	d.113.1.1 (A:) Coenzyme A pyrophosphatase {Deinoco	6e-05
d1q33a_	292	d.113.1.1 (A:) NUDT9 (mitochondrial ADP-ribose pyr	7e-05
d1u20a1	196	d.113.1.1 (A:14-209) U8 snorna-binding protein x29	4e-04
d1hzta_	153	d.113.1.2 (A:) Isopentenyl diphosphate isomerase {	6e-04

>d2a6ta2 d.113.1.7 (A:95-245) mRNA decapping enzyme Dcp2p catalytic domain {Schizosaccharomyces pombe [TaxId: 4896]} Length = 151

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: mRNA decapping enzyme-like
domain: mRNA decapping enzyme Dcp2p catalytic domain
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score =  127 bits (319), Expect = 9e-37
 Identities = 75/145 (51%), Positives = 92/145 (63%), Gaps = 3/145 (2%)

Query: 106 RVPVTGAIILDETYERCILVKGWKGS-SWSFPRGKKNKDEEDHACAIREVQEETGFDVSK 164
           R+PV GAI+LD + ++C+LVKGWK S  W FP+GK +KDE D  CAIREV EETGFD S 
Sbjct: 1   RIPVRGAIMLDMSMQQCVLVKGWKASSGWGFPKGKIDKDESDVDCAIREVYEETGFDCSS 60

Query: 165 LLNKDEFIEKIFGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPASDDVISH 224
            +N +EFI+     Q VRLYII G+  DT F  +T+KEIS+I W  L +L     +    
Sbjct: 61  RINPNEFIDMTIRGQNVRLYIIPGISLDTRFESRTRKEISKIEWHNLMDLPTFKKNKPQT 120

Query: 225 GVTGLKLYMVAPFLASLKKWISAHK 249
                K YMV PFLA LKKWI    
Sbjct: 121 --MKNKFYMVIPFLAPLKKWIKKRN 143

>d2qklb1 a.242.1.1 (B:2-91) mRNA decapping enzyme Dcp2p, N-terminal domain {Schizosaccharomyces pombe [TaxId: 4896]} Length = 90

class: All alpha proteins
fold: Dcp2 domain-like
superfamily: Dcp2 domain-like
family: Dcp2 box A domain
domain: mRNA decapping enzyme Dcp2p, N-terminal domain
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score =  119 bits (301), Expect = 9e-35
 Identities = 34/82 (41%), Positives = 50/82 (60%)

Query: 19  PQELLDDLCSRFVLNVPQEDQQSFERILFLVEYAHWFYEDNSVENNPSLKSFTLKEFTSL 78
             ++LDDL +RF+LN+P E+Q S ER+ F +E AHWFYED     N  L S  L+ F++ 
Sbjct: 7   FSQVLDDLSARFILNLPAEEQSSVERLCFQIEQAHWFYEDFIRAQNDQLPSLGLRVFSAK 66

Query: 79  MFNSCDVLRPYVAHIDDIFKDF 100
           +F  C +L  +    ++ F DF
Sbjct: 67  LFAHCPLLWKWSKVHEEAFDDF 88

>d1sjya_ d.113.1.1 (A:) Hypothetical protein DR1025 {Deinococcus radiodurans [TaxId: 1299]} Length = 158

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein DR1025
species: Deinococcus radiodurans [TaxId: 1299]

 Score = 66.7 bits (162), Expect = 4e-14
 Identities = 26/122 (21%), Positives = 46/122 (37%), Gaps = 9/122 (7%)

Query: 101 TSYKVRVPVTGAIILDETYERCILVK-------GWKGSSWSFPRGKKNKDEEDHACAIRE 153
           T   V +   G ++L+E     +LV+         K   W  P G     E     A+RE
Sbjct: 6   THVPVELRAAGVVLLNER-GDILLVQEKGIPGHPEKAGLWHIPSGAVEDGENPQDAAVRE 64

Query: 154 VQEETGFDVSKLLNKDEFIEKIFGQQRVRLYI-IAGVRDDTAFAPQTKKEISEIAWQRLD 212
             EETG  V  +     ++ +      +  ++ +A        AP    EI+E ++   +
Sbjct: 65  ACEETGLRVRPVKFLGAYLGRFPDGVLILRHVWLAEPEPGQTLAPAFTDEIAEASFVSRE 124

Query: 213 EL 214
           + 
Sbjct: 125 DF 126

>d2fvva1 d.113.1.1 (A:8-142) Diphosphoinositol polyphosphate phosphohydrolase {Human (Homo sapiens) [TaxId: 9606]} Length = 135

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diphosphoinositol polyphosphate phosphohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.8 bits (152), Expect = 7e-13
 Identities = 25/118 (21%), Positives = 41/118 (34%), Gaps = 7/118 (5%)

Query: 99  DFTSYKVRVPVTGAIILDETYE-RCILVKGWKGS-SWSFPRGKKNKDEEDHACAIREVQE 156
           D   YK R      +      E   +LV   +    W  P G    +EE    A+REV E
Sbjct: 6   DGDGYKKRA---ACLCFRSESEEEVLLVSSSRHPDRWIVPGGGMEPEEEPSVAAVREVCE 62

Query: 157 ETGFDVSKLLNKDEFIEKIFGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDEL 214
           E G     L       E    + R  +Y++  V +       +     +  W ++++ 
Sbjct: 63  EAGVKG-TLGRLVGIFENQERKHRTYVYVLI-VTEVLEDWEDSVNIGRKREWFKIEDA 118

>d2azwa1 d.113.1.1 (A:2-148) Hypothetical protein EF1141 {Enterococcus faecalis [TaxId: 1351]} Length = 147

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein EF1141
species: Enterococcus faecalis [TaxId: 1351]

 Score = 61.8 bits (149), Expect = 2e-12
 Identities = 23/120 (19%), Positives = 40/120 (33%), Gaps = 5/120 (4%)

Query: 98  KDFTSYKVRVPVTGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEE 157
           ++  +Y+ R      I+        +LV+   G+ +  P G+    E       REV EE
Sbjct: 9   EETLTYQTRYAA-YIIVSKPENNTMVLVQAPNGA-YFLPGGEIEGTETKEEAIHREVLEE 66

Query: 158 TGFDVS---KLLNKDEFIEKIFGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDEL 214
            G  V     L   DE+      Q          V +      +  +  + + W   +E 
Sbjct: 67  LGISVEIGCYLGEADEYFYSNHRQTAYYNPGYFYVANTWRQLSEPLERTNTLHWVAPEEA 126

>d1vcda1 d.113.1.1 (A:1-126) AP6A hydrolase Ndx1 {Thermus thermophilus [TaxId: 274]} Length = 126

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: AP6A hydrolase Ndx1
species: Thermus thermophilus [TaxId: 274]

 Score = 58.9 bits (142), Expect = 1e-11
 Identities = 22/106 (20%), Positives = 44/106 (41%), Gaps = 9/106 (8%)

Query: 111 GAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVS--KLLNK 168
           G ++ +   +R +L+   +   W FP+G     E     A+REV EETG        L  
Sbjct: 6   GGVVFNA--KREVLLLRDRMGFWVFPKGHPEPGESLEEAAVREVWEETGVRAEVLLPLYP 63

Query: 169 DEFIEKIFGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDEL 214
             ++     ++ V  +++         AP+ ++ ++   W   +E 
Sbjct: 64  TRYVNPKGVEREVHWFLM-----RGEGAPRLEEGMTGAGWFSPEEA 104

>d1k2ea_ d.113.1.1 (A:) Hypothetical protein PAE3301 {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 152

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein PAE3301
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

 Score = 56.4 bits (135), Expect = 2e-10
 Identities = 22/116 (18%), Positives = 45/116 (38%), Gaps = 12/116 (10%)

Query: 109 VTGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNK 168
           VT  ++++    + +LVK  +   + +P G    +E       RE +EETG  V  +   
Sbjct: 3   VTSGVLVEN--GKVLLVKHKRLGVYIYPGGHVEHNETPIEAVKREFEEETGIVVEPIGFT 60

Query: 169 DEFIEKIFGQQRVRLYIIAGVR----------DDTAFAPQTKKEISEIAWQRLDEL 214
              I++   ++ + L I+  V           D      +   ++    W  + E+
Sbjct: 61  YGIIDENAVERPMPLVILEEVVKYPEETHIHFDLIYLVKRVGGDLKNGEWIDVREI 116

>d1irya_ d.113.1.1 (A:) 7,8-dihydro-8-oxoguanine triphosphatase Hmth1 {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: 7,8-dihydro-8-oxoguanine triphosphatase Hmth1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.2 bits (135), Expect = 2e-10
 Identities = 22/109 (20%), Positives = 42/109 (38%), Gaps = 7/109 (6%)

Query: 109 VTGAIILDETYERCILVK---GWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKL 165
            T  ++L    +R +L     G+    W+   GK  + E     A RE+QEE+G  V  L
Sbjct: 7   YTLVLVLQP--QRVLLGMKKRGFGAGRWNGFGGKVQEGETIEDGARRELQEESGLTVDAL 64

Query: 166 LNKDEFIEKIFGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDEL 214
               + + +  G+  +    +             + +     W +LD++
Sbjct: 65  HKVGQIVFEFVGEPELMDVHVFCTDSIQ--GTPVESDEMRPCWFQLDQI 111

>d2b0va1 d.113.1.1 (A:4-149) Hypothetical protein NE0184 {Nitrosomonas europaea [TaxId: 915]} Length = 146

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein NE0184
species: Nitrosomonas europaea [TaxId: 915]

 Score = 50.2 bits (119), Expect = 2e-08
 Identities = 25/136 (18%), Positives = 41/136 (30%), Gaps = 12/136 (8%)

Query: 109 VTGAIILDETYERCILVKGWK---GSSWSFPRGKKNKDEEDHACAIREVQEETGFD--VS 163
              A+I  +  ++ +LV+          + P G     E       REV EETG      
Sbjct: 5   TVAAVIEQD--DKYLLVEEIPRGTAIKLNQPAGHLEPGESIIQACSREVLEETGHSFLPE 62

Query: 164 KLLNKDEFIEKIFGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPASDDVIS 223
            L     +     G   +R      V             I   AW  +DE++       +
Sbjct: 63  VLTGIYHWTCASNGTTYLRFTFSGQVVSFDPDRKLD-TGIVRAAWFSIDEIRAKQAMHRT 121

Query: 224 HGVTGLKLYMVAPFLA 239
             V    +  +  + A
Sbjct: 122 PLV----MQCIEDYHA 133

>d2b06a1 d.113.1.1 (A:1-155) Hypothetical protein SP1235 (spr1115) {Streptococcus pneumoniae [TaxId: 1313]} Length = 155

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein SP1235 (spr1115)
species: Streptococcus pneumoniae [TaxId: 1313]

 Score = 49.0 bits (116), Expect = 7e-08
 Identities = 24/114 (21%), Positives = 43/114 (37%), Gaps = 11/114 (9%)

Query: 107 VPVTGAIILDETYERCILVK----GWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDV 162
           +     +I D   +R ++        + S ++FP G    DE      IRE+ EETG  +
Sbjct: 8   ILTNICLIEDLETQRVVMQYRAPENNRWSGYAFPGGHVENDEAFAESVIREIYEETGLTI 67

Query: 163 S--KLLNKDEFIEKIFGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDEL 214
              +L+    +     G+  V  Y                 E  E++W + D++
Sbjct: 68  QNPQLVGIKNWPLDTGGRYIVICYKATEFSGTLQ-----SSEEGEVSWVQKDQI 116

>d1ryaa_ d.113.1.5 (A:) GDP-mannose mannosyl hydrolase NudD {Escherichia coli [TaxId: 562]} Length = 160

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: GDP-mannose mannosyl hydrolase NudD
domain: GDP-mannose mannosyl hydrolase NudD
species: Escherichia coli [TaxId: 562]

 Score = 47.9 bits (113), Expect = 2e-07
 Identities = 29/144 (20%), Positives = 45/144 (31%), Gaps = 18/144 (12%)

Query: 94  DDIFKDFTSYKVRVPVTGAIILDETYERCILVKGWKGSS---WSFPRGKKNKDEEDHACA 150
            + F         V +   I+ +      +L K     +   W  P G+  KDE   A  
Sbjct: 6   QEDFATVVRSTPLVSL-DFIVENSR-GEFLLGKRTNRPAQGYWFVPGGRVQKDETLEAAF 63

Query: 151 IREVQEETGFDVSKL----------LNKDEFIEKIFGQQRVRLYIIAGVRDDTAFAPQTK 200
            R    E G  +                D F    F    V L     V ++    P   
Sbjct: 64  ERLTMAELGLRLPITAGQFYGVWQHFYDDNFSGTDFTTHYVVLGFRFRVSEEELLLP--D 121

Query: 201 KEISEIAWQRLDELQPASDDVISH 224
           ++  +  W   D L  ASD+V ++
Sbjct: 122 EQHDDYRWLTSDAL-LASDNVHAN 144

>d1xsba_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Human (Homo sapiens) [TaxId: 9606]} Length = 153

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.5 bits (112), Expect = 2e-07
 Identities = 28/136 (20%), Positives = 47/136 (34%), Gaps = 9/136 (6%)

Query: 112 AIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLL----N 167
             + +   E  +L        W+ P+G     E+D   A+R  QEE G +  +L      
Sbjct: 22  PKVDNNAIEFLLLQASDGIHHWTPPKGHVEPGEDDLETALRATQEEAGIEAGQLTIIEGF 81

Query: 168 KDEFIEKIFGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPASDDVISHGVT 227
           K E       + +  +Y +A V+D      +   E     W  L+E       +      
Sbjct: 82  KRELNYVARNKPKTVIYWLAEVKDYD-VEIRLSHEHQAYRWLGLEEA----CQLAQFKEM 136

Query: 228 GLKLYMVAPFLASLKK 243
              L     FL S++ 
Sbjct: 137 KAALQEGHQFLCSIEA 152

>d1vk6a2 d.113.1.4 (A:126-256) NADH pyrophosphatase {Escherichia coli [TaxId: 562]} Length = 131

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: NADH pyrophosphatase
domain: NADH pyrophosphatase
species: Escherichia coli [TaxId: 562]

 Score = 47.0 bits (111), Expect = 2e-07
 Identities = 21/109 (19%), Positives = 34/109 (31%), Gaps = 8/109 (7%)

Query: 108 PVTGAIILDETYERCILVK--GWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKL 165
           P     I  +  +  +L +    +    +   G     E       REV EE+G  V   
Sbjct: 4   PCIIVAIRRD--DSILLAQHTRHRNGVHTVLAGFVEVGETLEQAVAREVMEESGIKVK-- 59

Query: 166 LNKDEFIEKIFGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDEL 214
            N      + +   +  +       D         KE+ E  W R D+L
Sbjct: 60  -NLRYVTSQPWPFPQSLMTAFMAEYDSGDIVIDP-KELLEANWYRYDDL 106

>d2fkba1 d.113.1.2 (A:8-168) Hypothetical protein YfcD {Escherichia coli [TaxId: 562]} Length = 161

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Hypothetical protein YfcD
species: Escherichia coli [TaxId: 562]

 Score = 46.7 bits (110), Expect = 5e-07
 Identities = 27/135 (20%), Positives = 46/135 (34%), Gaps = 8/135 (5%)

Query: 104 KVRVPVTGAIILDETYE-----RCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEET 158
            +R   T  ++ D   +     R        G   +   G    DE+    A RE +EE 
Sbjct: 27  CLRHRATYIVVHDGMGKILVQRRTETKDFLPGMLDATAGGVVQADEQLLESARREAEEEL 86

Query: 159 GFDVSKLLNKDEFIEKIFGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPAS 218
           G          +F  +    +      +        FA Q + E+SE+ W   +E+    
Sbjct: 87  GIAGVPFAEHGQFYFEDKNCRVW--GALFSCVSHGPFALQ-EDEVSEVCWLTPEEITARC 143

Query: 219 DDVISHGVTGLKLYM 233
           D+     +  L L+M
Sbjct: 144 DEFTPDSLKALALWM 158

>d1v8ya_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Thermus thermophilus [TaxId: 274]} Length = 158

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase
species: Thermus thermophilus [TaxId: 274]

 Score = 44.3 bits (104), Expect = 2e-06
 Identities = 27/129 (20%), Positives = 47/129 (36%), Gaps = 9/129 (6%)

Query: 106 RVPVTGAIILDETYERCILVK----GWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFD 161
             P    I L E   R + V+        +    P G     E+    A RE+ E+TG  
Sbjct: 23  HKPAVAVIALRE--GRMLFVRQMRPAVGLAPLEIPAGLIEPGEDPLEAARRELAEQTGLS 80

Query: 162 VSKLLNKDEFIEKIFGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDE-LQPASDD 220
                    F+   F  ++  +++   +++  A   +   E  E+ W R +E L+     
Sbjct: 81  GDLTYLFSYFVSPGFTDEKTHVFLAENLKEVEAHPDED--EAIEVVWMRPEEALERHQRG 138

Query: 221 VISHGVTGL 229
            +    TGL
Sbjct: 139 EVEFSATGL 147

>d1ktga_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Caenorhabditis elegans [TaxId: 6239]} Length = 137

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 43.8 bits (102), Expect = 3e-06
 Identities = 22/113 (19%), Positives = 42/113 (37%), Gaps = 5/113 (4%)

Query: 107 VPVTGAIIL---DETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVS 163
           V   G +I        E  +L   +    W+ P+G  +  E++   AIRE +EE      
Sbjct: 2   VKAAGLVIYRKLAGKIEFLLLQASYPPHHWTPPKGHVDPGEDEWQAAIRETKEEANITKE 61

Query: 164 KLLNKDEFIEKIF--GQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDEL 214
           +L   ++  E +F   + + +       + +     Q   E     W  L++ 
Sbjct: 62  QLTIHEDCHETLFYEAKGKPKSVKYWLAKLNNPDDVQLSHEHQNWKWCELEDA 114

>d1vhza_ d.113.1.1 (A:) ADP compounds hydrolase NudE {Escherichia coli [TaxId: 562]} Length = 186

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP compounds hydrolase NudE
species: Escherichia coli [TaxId: 562]

 Score = 43.9 bits (103), Expect = 5e-06
 Identities = 22/141 (15%), Positives = 49/141 (34%), Gaps = 8/141 (5%)

Query: 106 RVPVTGAIILDETYERCILVK----GWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFD 161
                  +I+    +  IL++    G +     F +G  +  E  +  A RE++EE GF 
Sbjct: 45  PTNREAVMIVPIVDDHLILIREYAVGTESYELGFSKGLIDPGESVYEAANRELKEEVGFG 104

Query: 162 VSKL-LNKDEFIEKIFGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDEL-QPASD 219
            + L   K   +   +   ++ + +   +  ++      + E        L  +     D
Sbjct: 105 ANDLTFLKKLSMAPSYFSSKMNIVVAQDLYPES--LEGDEPEPLPQVRWPLAHMMDLLED 162

Query: 220 DVISHGVTGLKLYMVAPFLAS 240
              +       L++V  +L  
Sbjct: 163 PDFNEARNVSALFLVREWLKG 183

>d1puna_ d.113.1.1 (A:) Nucleoside triphosphate pyrophosphorylase (MutT) {Escherichia coli [TaxId: 562]} Length = 129

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Nucleoside triphosphate pyrophosphorylase (MutT)
species: Escherichia coli [TaxId: 562]

 Score = 42.2 bits (98), Expect = 9e-06
 Identities = 20/114 (17%), Positives = 36/114 (31%), Gaps = 11/114 (9%)

Query: 106 RVPVTGAIILDETYERCILV-----KGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGF 160
           ++ +   II +E     I +          +   FP GK    E      +RE+QEE G 
Sbjct: 3   KLQIAVGIIRNE--NNEIFITRRAADAHMANKLEFPGGKIEMGETPEQAVVRELQEEVGI 60

Query: 161 DVSKLLNKDEFIEKIFGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDEL 214
                   ++   +   +     + +    +   +     KE     W  L  L
Sbjct: 61  TPQHFSLFEKLEYEFPDRHITLWFWLVERWEGEPWG----KEGQPGEWMSLVGL 110

>d2fmla2 d.113.1.6 (A:3-204) Hypothetical protein EF2700, N-terminal domain {Enterococcus faecalis [TaxId: 1351]} Length = 202

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: BT0354 N-terminal domain-like
domain: Hypothetical protein EF2700, N-terminal domain
species: Enterococcus faecalis [TaxId: 1351]

 Score = 42.5 bits (99), Expect = 2e-05
 Identities = 23/129 (17%), Positives = 51/129 (39%), Gaps = 16/129 (12%)

Query: 98  KDFTSYKVRVPVTGAIIL---DETYERCILV-----KGWKGSSWSFPRGKKNKDEEDHAC 149
           ++   Y+        ++L    E  +  +L+       ++ S W+ P G  N++E     
Sbjct: 28  QELPEYEKPSLTVDMVLLCYNKEADQLKVLLIQRKGHPFRNS-WALPGGFVNRNESTEDS 86

Query: 150 AIREVQEETGFDVSKLLNK----DEFIEKIFGQQRVRLYIIAGVRDDTAFAPQTKKEISE 205
            +RE +EETG  +S+   +        ++      V +  +A + ++   A     +  E
Sbjct: 87  VLRETKEETGVVISQENIEQLHSFSRPDRDPRGWVVTVSYLAFIGEEPLIAG---DDAKE 143

Query: 206 IAWQRLDEL 214
           + W  L+  
Sbjct: 144 VHWFNLERH 152

>d2o5fa1 d.113.1.2 (A:7-168) Hypothetical protein DR0079 {Deinococcus radiodurans str. R1 (Deinococcus radiodurans R1) [TaxId: 243230]} Length = 162

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Hypothetical protein DR0079
species: Deinococcus radiodurans str. R1 (Deinococcus radiodurans R1) [TaxId: 243230]

 Score = 41.7 bits (97), Expect = 2e-05
 Identities = 19/115 (16%), Positives = 32/115 (27%), Gaps = 6/115 (5%)

Query: 105 VRVPVTGAIILDETYE-----RCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETG 159
            RV V  A + +   +     R      +  +      G     E       RE +EE  
Sbjct: 26  ERVRVVNAFLRNSQGQLWIPRRSPSKSLFPNALDVSVGGAVQSGETYEEAFRREAREELN 85

Query: 160 FDVSKLLNKDEFIEKIFGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDEL 214
            ++  L  +       F         +  +R D         +IS   W   + L
Sbjct: 86  VEIDALSWRPLASFSPFQTTLSSFMCVYELRSDATPIFN-PNDISGGEWLTPEHL 139

>d1nqza_ d.113.1.1 (A:) Coenzyme A pyrophosphatase {Deinococcus radiodurans [TaxId: 1299]} Length = 187

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Coenzyme A pyrophosphatase
species: Deinococcus radiodurans [TaxId: 1299]

 Score = 41.0 bits (95), Expect = 6e-05
 Identities = 17/82 (20%), Positives = 31/82 (37%)

Query: 133 WSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQQRVRLYIIAGVRDD 192
            +FP G  +  E     A+RE QEE   D + +    E  +           ++  +  +
Sbjct: 63  IAFPGGSLDAGETPTQAALREAQEEVALDPAAVTLLGELDDVFTPVGFHVTPVLGRIAPE 122

Query: 193 TAFAPQTKKEISEIAWQRLDEL 214
                +   E+++I    L EL
Sbjct: 123 ALDTLRVTPEVAQIITPTLAEL 144

>d1q33a_ d.113.1.1 (A:) NUDT9 (mitochondrial ADP-ribose pyrophosphatase) {Human (Homo sapiens) [TaxId: 9606]} Length = 292

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: NUDT9 (mitochondrial ADP-ribose pyrophosphatase)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.6 bits (97), Expect = 7e-05
 Identities = 24/145 (16%), Positives = 47/145 (32%), Gaps = 31/145 (21%)

Query: 98  KDFTSYKVRVPVTGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEE 157
           +D +  K+  PV+G  IL     + + +K      W+ P G  +  E+  A   RE  EE
Sbjct: 122 RDSSGNKIMHPVSGKHIL-----QFVAIKRKDCGEWAIPGGMVDPGEKISATLKREFGEE 176

Query: 158 TGFDVSKLL----NKDEFIEKIFGQQRVRLYI----------------------IAGVRD 191
               + K        +E + K+F Q  + +Y                             
Sbjct: 177 ALNSLQKTSAEKREIEEKLHKLFSQDHLVIYKGYVDDPRNTDNAWMETEAVNYHDETGEI 236

Query: 192 DTAFAPQTKKEISEIAWQRLDELQP 216
                 +   +  ++ W  +++   
Sbjct: 237 MDNLMLEAGDDAGKVKWVDINDKLK 261

>d1u20a1 d.113.1.1 (A:14-209) U8 snorna-binding protein x29 {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 196

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: U8 snorna-binding protein x29
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 38.5 bits (89), Expect = 4e-04
 Identities = 21/136 (15%), Positives = 48/136 (35%), Gaps = 17/136 (12%)

Query: 123 ILVKGWKGSSWSFPRGKKNKDEED-HACAIREVQEETGFDVSKL-LNKDEFIEKIFGQQR 180
           +++  + G    FP G  +  +        RE++EE G  ++ + + +D++      +  
Sbjct: 46  LMMMRFDGR-LGFPGGFVDTRDISLEEGLKRELEEELGPALATVEVTEDDYRSSQVREHP 104

Query: 181 VRLYIIAGVRDDT--------AFAPQTK---KEISEIAWQRLDELQPASDDV---ISHGV 226
            +      +++          A A   K    E+  +    L  L+     +   + +  
Sbjct: 105 QKCVTHFYIKELKLEEIERIEAEAVNAKDHGLEVMGLIRVPLYTLRDRVGGLPAFLCNNF 164

Query: 227 TGLKLYMVAPFLASLK 242
            G     +   L SLK
Sbjct: 165 IGNSKSQLLYALRSLK 180

>d1hzta_ d.113.1.2 (A:) Isopentenyl diphosphate isomerase {Escherichia coli [TaxId: 562]} Length = 153

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Isopentenyl diphosphate isomerase
species: Escherichia coli [TaxId: 562]

 Score = 37.5 bits (86), Expect = 6e-04
 Identities = 15/97 (15%), Positives = 29/97 (29%), Gaps = 5/97 (5%)

Query: 128 WKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIF----GQQRVRL 183
           W G   +   G     E +    IR  + E G +++   +             G     +
Sbjct: 28  WPGVWTNSVCGHPQLGESNEDAVIRRCRYELGVEITPPESIYPDFRYRATDPSGIVENEV 87

Query: 184 YIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPASDD 220
             +   R  +A       E+ +  W  L ++    D 
Sbjct: 88  CPVFAARTTSALQIN-DDEVMDYQWCDLADVLHGIDA 123

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	322
d2qklb1	90	mRNA decapping enzyme Dcp2p, N-terminal domain {Sc	99.97
d2a6ta2	151	mRNA decapping enzyme Dcp2p catalytic domain {Schi	99.95
d1vcda1	126	AP6A hydrolase Ndx1 {Thermus thermophilus [TaxId:	99.82
d1vk6a2	131	NADH pyrophosphatase {Escherichia coli [TaxId: 562	99.81
d1sjya_	158	Hypothetical protein DR1025 {Deinococcus radiodura	99.81
d2b0va1	146	Hypothetical protein NE0184 {Nitrosomonas europaea	99.81
d1mqea_	202	ADP-ribose pyrophosphatase {Mycobacterium tubercul	99.8
d1vhza_	186	ADP compounds hydrolase NudE {Escherichia coli [Ta	99.79
d1v8ya_	158	ADP-ribose pyrophosphatase {Thermus thermophilus [	99.79
d2b06a1	155	Hypothetical protein SP1235 (spr1115) {Streptococc	99.79
d1jkna_	165	Diadenosine tetraphosphate hydrolase (Ap4A hydrola	99.78
d1puna_	129	Nucleoside triphosphate pyrophosphorylase (MutT) {	99.77
d2fkba1	161	Hypothetical protein YfcD {Escherichia coli [TaxId	99.77
d1ktga_	137	Diadenosine tetraphosphate hydrolase (Ap4A hydrola	99.77
d2fb1a2	147	Hypothetical protein BT0354, N-terminal domain {Ba	99.76
d1g0sa_	209	ADP-ribose pyrophosphatase {Escherichia coli [TaxI	99.75
d1ryaa_	160	GDP-mannose mannosyl hydrolase NudD {Escherichia c	99.74
d1xsba_	153	Diadenosine tetraphosphate hydrolase (Ap4A hydrola	99.73
d2fvva1	135	Diphosphoinositol polyphosphate phosphohydrolase {	99.72
d1irya_	156	7,8-dihydro-8-oxoguanine triphosphatase Hmth1 {Hum	99.72
d2fmla2	202	Hypothetical protein EF2700, N-terminal domain {En	99.71
d1k2ea_	152	Hypothetical protein PAE3301 {Archaeon Pyrobaculum	99.71
d2azwa1	147	Hypothetical protein EF1141 {Enterococcus faecalis	99.71
d1hzta_	153	Isopentenyl diphosphate isomerase {Escherichia col	99.68
d2o5fa1	162	Hypothetical protein DR0079 {Deinococcus radiodura	99.65
d1nqza_	187	Coenzyme A pyrophosphatase {Deinococcus radioduran	99.65
d1viua_	189	ADP-ribose pyrophosphatase homologue YffH {Escheri	99.64
d1rrqa2	127	Adenine glycosylase MutY, C-terminal domain {Bacil	99.56
d1q33a_	292	NUDT9 (mitochondrial ADP-ribose pyrophosphatase) {	99.33
d1u20a1	196	U8 snorna-binding protein x29 {African clawed frog	99.31
d1x51a1	142	A/G-specific adenine DNA glycosylase {Human (Homo	99.09

>d2qklb1 a.242.1.1 (B:2-91) mRNA decapping enzyme Dcp2p, N-terminal domain {Schizosaccharomyces pombe [TaxId: 4896]}

class: All alpha proteins
fold: Dcp2 domain-like
superfamily: Dcp2 domain-like
family: Dcp2 box A domain
domain: mRNA decapping enzyme Dcp2p, N-terminal domain
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.97  E-value=8.2e-32  Score=203.46  Aligned_cols=88  Identities=39%  Similarity=0.705  Sum_probs=84.1

Q ss_pred             CCCCchhHHHhhhhhhhccCChhhhhchHHHHHHHhhhheeeeeCCccCCCCCCcchHHHHHHHHhCCCCcccccccchh
Q 020742           15 GGLPPQELLDDLCSRFVLNVPQEDQQSFERILFLVEYAHWFYEDNSVENNPSLKSFTLKEFTSLMFNSCDVLRPYVAHID   94 (322)
Q Consensus        15 ~~~~~~~~l~dl~~Rfi~n~p~~~~~~~~rl~f~ie~a~w~y~d~~~~~~p~l~~~~l~~f~~~l~~~~~~l~~~~~~~~   94 (322)
                      ++..++|+|||||+|||+|+|++|+++++|||||||+|||||+||+++.+|.||++++++|+..||++|+.++++..+++
T Consensus         3 ~~~~~~eiLdDL~~RFilN~P~eel~~~~rl~FqiE~A~WfY~Df~~~~~p~Lp~~~~~~Fa~~if~~cp~L~~~~~~~~   82 (90)
T d2qklb1           3 TNATFSQVLDDLSARFILNLPAEEQSSVERLCFQIEQAHWFYEDFIRAQNDQLPSLGLRVFSAKLFAHCPLLWKWSKVHE   82 (90)
T ss_dssp             TTCCHHHHHHHHHHHHTTTCCGGGSSCHHHHHHHHHHHHHHHHHTTTTTCTTSCCCCHHHHHHHHHHHCTHHHHHHTCCH
T ss_pred             ccccHHHHHHHHHHHHHHcCCHHHhccHHHHHHHHHHHHHHHHHHhhhccCCCCCCcHHHHHHHHHHHCHHHHhhhhhHH
Confidence            34678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhcC
Q 020742           95 DIFKDFTS  102 (322)
Q Consensus        95 ~~~~~~~~  102 (322)
                      +++++|.+
T Consensus        83 ~~~~~F~~   90 (90)
T d2qklb1          83 EAFDDFLR   90 (90)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHHhC
Confidence            99998864

>d2a6ta2 d.113.1.7 (A:95-245) mRNA decapping enzyme Dcp2p catalytic domain {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: mRNA decapping enzyme-like
domain: mRNA decapping enzyme Dcp2p catalytic domain
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.95  E-value=5.3e-28  Score=202.15  Aligned_cols=142  Identities=53%  Similarity=0.924  Sum_probs=106.8

Q ss_pred             cccEEEEEEEeCCCCEEEEEEeeC-CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeeeeecccCeEEEEEE
Q 020742          106 RVPVTGAIILDETYERCILVKGWK-GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQQRVRLY  184 (322)
Q Consensus       106 ~v~v~g~Iv~~~~~~kvLLvrr~~-~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~~~~~~~~~~~~~y  184 (322)
                      +++|+||||++.+.++|||+|++. ++.|+||||+++.||++.+||+||++||||+++..+.....+..........++|
T Consensus         1 ~~~v~Gaii~~~~~~kvLLvk~~~~~~~W~lPgG~ie~gEs~~~aa~RE~~EEtGi~~~~~~~~~~~~~~~~~~~~~~~~   80 (151)
T d2a6ta2           1 RIPVRGAIMLDMSMQQCVLVKGWKASSGWGFPKGKIDKDESDVDCAIREVYEETGFDCSSRINPNEFIDMTIRGQNVRLY   80 (151)
T ss_dssp             CCCEEEEEEBCSSSSEEEEEEESSTTCCCBCSEEECCTTCCHHHHHHHHHHHHHCCCCTTTCCTTCEEEEEETTEEEEEE
T ss_pred             CccEEEEEEEECCCCEEEEEEEeCCCCCEECCcccccCCCCHHHHHHHHHHHHhCCCceeeeecceEEeecccCceEEEE
Confidence            578999999998877999999966 7889999999999999999999999999999987655444444444445566677


Q ss_pred             EEEeecCCCCCCCCCccceeeEEEEecccccccCCCccchhhhhhhhhhhhhhHHHHHHHHHhcC
Q 020742          185 IIAGVRDDTAFAPQTKKEISEIAWQRLDELQPASDDVISHGVTGLKLYMVAPFLASLKKWISAHK  249 (322)
Q Consensus       185 ~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~~~~~~~~~~~~~~~~~v~pf~~~L~~wi~~~~  249 (322)
                      ++..+..+..+.+...+|+.++.|+++++|+.+..+.  .......||++.||+++|++||++++
T Consensus        81 ~~~~~~~~~~~~~~~~~Ei~~~~W~~~~el~~~~~~~--~~~~~~~~~~v~~fi~~L~~wi~~~~  143 (151)
T d2a6ta2          81 IIPGISLDTRFESRTRKEISKIEWHNLMDLPTFKKNK--PQTMKNKFYMVIPFLAPLKKWIKKRN  143 (151)
T ss_dssp             EECCCCTTCCCC------EEEEEEEEGGGSTTCC--------CCGGGTTTGGGHHHHHHHHHHHH
T ss_pred             EEEEeccCCcccccCCCccceEEEEEHHHhhhhhhcc--cccccchhhhHHHHHHHHHHHHHHhc
Confidence            7766666665556667899999999999998864332  12233467899999999999998775

>d1vcda1 d.113.1.1 (A:1-126) AP6A hydrolase Ndx1 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: AP6A hydrolase Ndx1
species: Thermus thermophilus [TaxId: 274]

Probab=99.82  E-value=6.8e-20  Score=147.83  Aligned_cols=102  Identities=21%  Similarity=0.410  Sum_probs=75.9

Q ss_pred             EEEEEEEeCCCCEEEEEEeeCCCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeee--eeecccCeEEEEEEEE
Q 020742          109 VTGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDE--FIEKIFGQQRVRLYII  186 (322)
Q Consensus       109 v~g~Iv~~~~~~kvLLvrr~~~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~--~~~~~~~~~~~~~y~~  186 (322)
                      .||+||+++++ ++||+++. .|.|.||||+++.|||+.+||+||++||||+++..+..+..  +.........+++|.+
T Consensus         4 ~agavv~~~~~-~vLl~~~~-~g~w~~PgG~ve~gEt~~~aa~RE~~EEtGi~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (126)
T d1vcda1           4 GAGGVVFNAKR-EVLLLRDR-MGFWVFPKGHPEPGESLEEAAVREVWEETGVRAEVLLPLYPTRYVNPKGVEREVHWFLM   81 (126)
T ss_dssp             EEEEEEECTTS-CEEEEECT-TSCEECCEECCCTTCCHHHHHHHHHHHHHCCEEEEEEEEEEEEEECTTSCEEEEEEEEE
T ss_pred             EEEEEEEECCC-EEEEEEcC-CCCEECCccccCCCCCHHHHHHHHHHHHcCCeeEEEEEEeeeeeccCCCeEEEEEEEEE
Confidence            57888888874 89999865 68999999999999999999999999999999886555443  2222222334444544


Q ss_pred             EeecCCCCCCCCCccceeeEEEEeccccccc
Q 020742          187 AGVRDDTAFAPQTKKEISEIAWQRLDELQPA  217 (322)
Q Consensus       187 ~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~  217 (322)
                      . ....    +...+|+.+++|++++++.++
T Consensus        82 ~-~~~~----~~~~~e~~~~~W~~~~e~~~~  107 (126)
T d1vcda1          82 R-GEGA----PRLEEGMTGAGWFSPEEARAL  107 (126)
T ss_dssp             E-EESC----CCCCTTCCEEEEECHHHHHHH
T ss_pred             E-EcCC----CCCCccceEEEEEEHHHHhhc
Confidence            3 3332    334578889999999999873

>d1vk6a2 d.113.1.4 (A:126-256) NADH pyrophosphatase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: NADH pyrophosphatase
domain: NADH pyrophosphatase
species: Escherichia coli [TaxId: 562]

Probab=99.81  E-value=1.7e-19  Score=146.67  Aligned_cols=105  Identities=22%  Similarity=0.222  Sum_probs=79.4

Q ss_pred             ccEEEEEEEeCCCCEEEEEEeeC--CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeeeeecccCeEEEEEE
Q 020742          107 VPVTGAIILDETYERCILVKGWK--GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQQRVRLY  184 (322)
Q Consensus       107 v~v~g~Iv~~~~~~kvLLvrr~~--~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~~~~~~~~~~~~~y  184 (322)
                      .|++.+++.+++  ++||+++.+  .|.|+||||++++|||+++||+||++||||+++.....+..+. ....+....+|
T Consensus         3 ~paViv~i~~~~--~vLL~~~~~~~~g~w~lpGG~ve~GEt~~~aa~REl~EEtG~~~~~~~~~~~~~-~~~~~~~~~~f   79 (131)
T d1vk6a2           3 APCIIVAIRRDD--SILLAQHTRHRNGVHTVLAGFVEVGETLEQAVAREVMEESGIKVKNLRYVTSQP-WPFPQSLMTAF   79 (131)
T ss_dssp             EEEEEEEEEETT--EEEEEEETTTCSSCCBCEEEECCTTCCHHHHHHHHHHHHHCCEEEEEEEEEEEE-EETTEEEEEEE
T ss_pred             ccEEEEEEEeCC--EEEEEEeccCCCCCEecccCCCcCCCcHHHHHHHHHHHHhCCcccceeEEEEec-cCcCceEEEEE
Confidence            356666666654  999999876  6889999999999999999999999999999998765554432 23344555566


Q ss_pred             EEEeecCCCCCCCCCccceeeEEEEeccccccc
Q 020742          185 IIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  217 (322)
Q Consensus       185 ~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~  217 (322)
                      ++....++.   ..++.|+.+++|+++++|+.+
T Consensus        80 ~~~~~~~~~---~~~~~E~~~~~W~~~~el~~l  109 (131)
T d1vk6a2          80 MAEYDSGDI---VIDPKELLEANWYRYDDLPLL  109 (131)
T ss_dssp             EEEEEECCC---CCCTTTEEEEEEEETTSCCSC
T ss_pred             EEEEcCCcc---cCCCccEEEEEEEcHHHHhhC
Confidence            665544432   234688999999999999875

>d1sjya_ d.113.1.1 (A:) Hypothetical protein DR1025 {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein DR1025
species: Deinococcus radiodurans [TaxId: 1299]

Probab=99.81  E-value=9.5e-20  Score=151.84  Aligned_cols=113  Identities=20%  Similarity=0.313  Sum_probs=85.0

Q ss_pred             CcccccEEEEEEEeCCCCEEEEEEeeC-------CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeeeee--
Q 020742          103 YKVRVPVTGAIILDETYERCILVKGWK-------GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIE--  173 (322)
Q Consensus       103 y~~~v~v~g~Iv~~~~~~kvLLvrr~~-------~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~~~--  173 (322)
                      ++..+.++|+|++++++ +|||++|..       .|.|+||||+++.||++.+||+||++||||+++..+..+..+..  
T Consensus         8 ~p~~~~a~~~vi~~~~g-~iLl~~r~~~~~~~~~~g~W~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~i~~~~~~~   86 (158)
T d1sjya_           8 VPVELRAAGVVLLNERG-DILLVQEKGIPGHPEKAGLWHIPSGAVEDGENPQDAAVREACEETGLRVRPVKFLGAYLGRF   86 (158)
T ss_dssp             CCCCEEEEEEEEBCTTC-CEEEEEESCC----CCCCCEECSEEECCTTSCHHHHHHHHHHHHHSCCEEEEEEEEEEEEEC
T ss_pred             CCCceeEEEEEEEeCCC-EEEEEEEecCCCCCCCCCcEECCceecCCCCCHHHHHHHHHHHHhCccceeeEEEEEEEEEC
Confidence            44466788889888774 999999864       47899999999999999999999999999999987655544322  


Q ss_pred             cccCeEEEEEEEEEeecCCCCCCCCCccceeeEEEEeccccccc
Q 020742          174 KIFGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  217 (322)
Q Consensus       174 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~  217 (322)
                      ........++|++....+ ....+...+|+.+++|++++++.++
T Consensus        87 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~E~~~~~w~~~~el~~l  129 (158)
T d1sjya_          87 PDGVLILRHVWLAEPEPG-QTLAPAFTDEIAEASFVSREDFAQL  129 (158)
T ss_dssp             TTSCEEEEEEEEEEECSS-CCCCCCCCSSEEEEEEECHHHHHHH
T ss_pred             CCCCEEEEEEEEEEEcCC-cccCCCCCcceEEEEEEEHHHHhhh
Confidence            222334455666654443 3334445679999999999999763

>d2b0va1 d.113.1.1 (A:4-149) Hypothetical protein NE0184 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein NE0184
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.81  E-value=1.1e-19  Score=149.26  Aligned_cols=126  Identities=18%  Similarity=0.226  Sum_probs=84.2

Q ss_pred             EEEEEEeCCCCEEEEEEeeC---CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeee--eeecccCeEE-EEE
Q 020742          110 TGAIILDETYERCILVKGWK---GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDE--FIEKIFGQQR-VRL  183 (322)
Q Consensus       110 ~g~Iv~~~~~~kvLLvrr~~---~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~--~~~~~~~~~~-~~~  183 (322)
                      |++||.++  +++||++++.   .+.|.||||+++.|||+.+||+||++||||+++.....+..  +.....+... ..+
T Consensus         6 va~ii~~~--~k~Llv~r~~~~~~~~w~~PgG~ve~gEt~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (146)
T d2b0va1           6 VAAVIEQD--DKYLLVEEIPRGTAIKLNQPAGHLEPGESIIQACSREVLEETGHSFLPEVLTGIYHWTCASNGTTYLRFT   83 (146)
T ss_dssp             EEEECEET--TEEEEEEECSSSSCCEEECSEEECCTTSCHHHHHHHHHHHHHSEEEEEEEEEEEEEEEETTTTEEEEEEE
T ss_pred             EEEEEEeC--CEEEEEEEecCCCCCEEECCeeeECCCCCHHHHHHHHHHHhheeecccceEEEEEEEecCCCCeEEEEEE
Confidence            45566665  3999999877   56899999999999999999999999999999876443332  2222233333 333


Q ss_pred             EEEEeecCCCCCCCCCccceeeEEEEecccccccCCCccchhhhhhhhhhhhhh-HHHHHHHHHhcCCC
Q 020742          184 YIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPASDDVISHGVTGLKLYMVAPF-LASLKKWISAHKPS  251 (322)
Q Consensus       184 y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~~~~~~~~~~~~~~~~~v~pf-~~~L~~wi~~~~~~  251 (322)
                      |.+.......  ....++|+.+++|++++++......            ...|. .+.+.+|++.++.+
T Consensus        84 ~~~~~~~~~~--~~~~~~E~~~~~W~~~~el~~~~~~------------~~~~~v~~~l~~y~~~~~~P  138 (146)
T d2b0va1          84 FSGQVVSFDP--DRKLDTGIVRAAWFSIDEIRAKQAM------------HRTPLVMQCIEDYHAGKRYP  138 (146)
T ss_dssp             EEEEEEEECT--TSCCCTTEEEEEEEEHHHHHHTGGG------------BSSTHHHHHHHHHHTTCCBC
T ss_pred             EEEEeecCCC--CCCCCcceeEEEEeeHHHHhhCccc------------cCCHHHHHHHHHHHhCCCCC
Confidence            4443333221  2334678999999999999764221            11233 35677888766543

>d1mqea_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.80  E-value=1.1e-20  Score=165.22  Aligned_cols=146  Identities=21%  Similarity=0.360  Sum_probs=98.1

Q ss_pred             cchHHHHHHHHhCCCCcccccccchhHHHhhhcCCcccccEEEEEEEeCCCCEEEEEEeeC----CCcEEcccccCC-CC
Q 020742           69 SFTLKEFTSLMFNSCDVLRPYVAHIDDIFKDFTSYKVRVPVTGAIILDETYERCILVKGWK----GSSWSFPRGKKN-KD  143 (322)
Q Consensus        69 ~~~l~~f~~~l~~~~~~l~~~~~~~~~~~~~~~~y~~~v~v~g~Iv~~~~~~kvLLvrr~~----~~~w~fPgG~ie-~g  143 (322)
                      +++++.....+++|....+.++.+              -+++++++++++ ++|||+++++    ...|+||+|+|| +|
T Consensus        14 ~~~v~~d~v~~pdG~~~~~~~v~~--------------~~~V~vl~~~~~-~~ilLvrq~R~~~~~~~welPaG~ie~~g   78 (202)
T d1mqea_          14 IFALRRDQVRMPGGGIVTREVVEH--------------FGAVAIVAMDDN-GNIPMVYQYRHTYGRRLWELPAGLLDVAG   78 (202)
T ss_dssp             SEEEEEEEEC-----CEEEEEEEE--------------CCEEEEEECCTT-SEEEEEEEEETTTTEEEEECCEEECCSTT
T ss_pred             EEEEEEEEEECCCCCEEEEEEEEc--------------CCeEEEEEECCC-CEEEEEEecccccCceEEeccccccccCC
Confidence            444444445566666655544433              356677777776 4999999977    337999999999 79


Q ss_pred             CCHHHHHHHHHHHHhCCcccceeeeeeeee-cccCeEEEEEEEEEeecCCCCCCCCCccceeeEEEEeccccccc--CCC
Q 020742          144 EEDHACAIREVQEETGFDVSKLLNKDEFIE-KIFGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA--SDD  220 (322)
Q Consensus       144 Es~~eaA~REv~EETGl~v~~l~~~~~~~~-~~~~~~~~~~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~--~~~  220 (322)
                      |++++||+||++||||+.+..+..++.+.. .....+.+++|++............+++|..++.|++++++.++  +++
T Consensus        79 E~~~~aA~REl~EETG~~~~~~~~l~~~~~~~g~~~~~~~~fla~~~~~~~~~~~~~eee~i~v~w~~~~e~~~~i~~G~  158 (202)
T d1mqea_          79 EPPHLTAARELREEVGLQASTWQVLVDLDTAPGFSDESVRVYLATGLREVGRPEAHHEEADMTMGWYPIAEAARRVLRGE  158 (202)
T ss_dssp             CCHHHHHHHHHHHHHCEEEEEEEEEEEECSCTTTBCCCEEEEEEEEEEECCC----------CEEEEEHHHHHHHHTTTS
T ss_pred             CCHHHHHHHHHhhccccccccceEeeeeeccCccCCcEEEEEEEEeccccCCCCCCCccceEEEEEEEHHHHHHHHHcCC
Confidence            999999999999999999988887777543 45667788888887665433323334455668999999999884  667


Q ss_pred             cc-chhhhhh
Q 020742          221 VI-SHGVTGL  229 (322)
Q Consensus       221 ~~-~~~~~~~  229 (322)
                      +. +.++.++
T Consensus       159 I~d~~ti~al  168 (202)
T d1mqea_         159 IVNSIAIAGV  168 (202)
T ss_dssp             CCCHHHHHHH
T ss_pred             CCcHHHHHHH
Confidence            76 6666665

>d1vhza_ d.113.1.1 (A:) ADP compounds hydrolase NudE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP compounds hydrolase NudE
species: Escherichia coli [TaxId: 562]

Probab=99.79  E-value=4.2e-19  Score=152.99  Aligned_cols=127  Identities=15%  Similarity=0.256  Sum_probs=93.5

Q ss_pred             EEEEEEEeCCCCEEEEEEeeC----CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeeeee-cccCeEEEEE
Q 020742          109 VTGAIILDETYERCILVKGWK----GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIE-KIFGQQRVRL  183 (322)
Q Consensus       109 v~g~Iv~~~~~~kvLLvrr~~----~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~~~-~~~~~~~~~~  183 (322)
                      ++.++...+  +++||+++++    ...|+||||++|+||++.+||+||++||||+.+..+..++.++. .+.....+++
T Consensus        50 ~v~vi~~~~--~~vlLvrq~R~~~~~~~~elP~G~ie~gE~p~~aA~REl~EEtG~~~~~~~~l~~~~~~~g~~~~~~~~  127 (186)
T d1vhza_          50 AVMIVPIVD--DHLILIREYAVGTESYELGFSKGLIDPGESVYEAANRELKEEVGFGANDLTFLKKLSMAPSYFSSKMNI  127 (186)
T ss_dssp             EEEEEEEET--TEEEEEEEEETTTTEEEEECEEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEECCTTTCCCEEEE
T ss_pred             EEEEEEccC--CEEEEEEeeecCCCceEeecccccCCCCcCHHHHHHHHHHHHhccccccceecceeeccccccceEEEE
Confidence            334443444  3899999887    45699999999999999999999999999999988777776543 4566677888


Q ss_pred             EEEEeecCCCCCCCCCccceeeEEEEeccccccc--CCCcc-chhhhhhhhhhhhhhHHHHHHHHHhc
Q 020742          184 YIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA--SDDVI-SHGVTGLKLYMVAPFLASLKKWISAH  248 (322)
Q Consensus       184 y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~--~~~~~-~~~~~~~~~~~v~pf~~~L~~wi~~~  248 (322)
                      |++.......  ...+++|..++.|++++++.++  ++++. ++++.++         --+++||+.+
T Consensus       128 ~~a~~~~~~~--~~~de~E~~~~~~~~~~e~~~~i~~g~i~da~ti~al---------~~~~~~L~~~  184 (186)
T d1vhza_         128 VVAQDLYPES--LEGDEPEPLPQVRWPLAHMMDLLEDPDFNEARNVSAL---------FLVREWLKGQ  184 (186)
T ss_dssp             EEEEEEEECC--CCCCCSSCCCEEEEEGGGGGGGGGCTTTCBHHHHHHH---------HHHHHHHHHT
T ss_pred             EEEEeccccc--CCCCCCcEEEEEEEeHHHHHHHHHcCCCChHHHHHHH---------HHHHHHHHHc
Confidence            8887665432  2345678889999999999885  44554 5566554         2245666655

>d1v8ya_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase
species: Thermus thermophilus [TaxId: 274]

Probab=99.79  E-value=1.4e-19  Score=152.07  Aligned_cols=112  Identities=21%  Similarity=0.361  Sum_probs=81.8

Q ss_pred             cccEEEEEEEeCCCCEEEEEEeeC----CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeeee-ecccCeEE
Q 020742          106 RVPVTGAIILDETYERCILVKGWK----GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFI-EKIFGQQR  180 (322)
Q Consensus       106 ~v~v~g~Iv~~~~~~kvLLvrr~~----~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~~-~~~~~~~~  180 (322)
                      +.+++++++++++  ++||+++++    ...|+||||++|+||++.+||+||++||||+.+. +..+..+. .+...++.
T Consensus        23 ~~~aV~vl~~~~~--~vlLv~q~R~~~~~~~~elP~G~ve~gE~~~~aA~REl~EEtG~~~~-~~~l~~~~~~~g~~~~~   99 (158)
T d1v8ya_          23 HKPAVAVIALREG--RMLFVRQMRPAVGLAPLEIPAGLIEPGEDPLEAARRELAEQTGLSGD-LTYLFSYFVSPGFTDEK   99 (158)
T ss_dssp             ECCEEEEEEEETT--EEEEEECCBTTTTBCCBBCSEEECCTTCCHHHHHHHHHHHHHSEEEE-EEEEEEEESCTTTBCCE
T ss_pred             cCCEEEEEEEECC--EEEEEEeeecCCCCceEecchhhccccCCHHHHHHHHHHhhcCCcce-eeeecceecCCCcceEE
Confidence            3467788888753  999999876    5789999999999999999999999999999764 44555443 34455677


Q ss_pred             EEEEEEEeecCCCCCCCCCccceeeEEEEeccccccc--CCCcc
Q 020742          181 VRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA--SDDVI  222 (322)
Q Consensus       181 ~~~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~--~~~~~  222 (322)
                      +++|++.......  ...+++|..++.|++++++.++  ++++.
T Consensus       100 ~~~f~a~~~~~~~--~~~d~~E~~ev~w~~~~e~~~~i~~g~i~  141 (158)
T d1v8ya_         100 THVFLAENLKEVE--AHPDEDEAIEVVWMRPEEALERHQRGEVE  141 (158)
T ss_dssp             EEEEEEEEEEECC----------CEEEEECHHHHHHHHHTTSCC
T ss_pred             EEEEEEccccccc--cCCCCCeeEEEEEEEHHHHHHHHHCCCCc
Confidence            8888887665431  2334578889999999999984  66665

>d2b06a1 d.113.1.1 (A:1-155) Hypothetical protein SP1235 (spr1115) {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein SP1235 (spr1115)
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.79  E-value=7.2e-19  Score=146.61  Aligned_cols=109  Identities=21%  Similarity=0.282  Sum_probs=78.2

Q ss_pred             cccccEEEEEEEeCCCCEEEEEEeeC----CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeee--eeeeecccC
Q 020742          104 KVRVPVTGAIILDETYERCILVKGWK----GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNK--DEFIEKIFG  177 (322)
Q Consensus       104 ~~~v~v~g~Iv~~~~~~kvLLvrr~~----~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~--~~~~~~~~~  177 (322)
                      +..+.+..|+|.+.+++++||++|..    .+.|+||||++++|||+.+||+||++||||+++.....+  ..+......
T Consensus         5 ~~~~~~~~~~i~~~~~~~lLl~~R~~~~~~~~~w~~PGG~ve~gEs~~~aa~RE~~EEtGl~v~~~~~~~~~~~~~~~~~   84 (155)
T d2b06a1           5 QLTILTNICLIEDLETQRVVMQYRAPENNRWSGYAFPGGHVENDEAFAESVIREIYEETGLTIQNPQLVGIKNWPLDTGG   84 (155)
T ss_dssp             GCEEEEEEEEEEETTTTEEEEEEEC-----CCEEECCCCBCCTTSCHHHHHHHHHHHHHSEEEESCEEEEEEEEECTTSC
T ss_pred             CcEEEEEEEEEEECCCCEEEEEEECCCCCCCCcEECceeEEcCCCCHHHHHHHHHHHhcCeeEeeeEEEEEEEeecCCCC
Confidence            34455556677777767999999865    367999999999999999999999999999998764333  333333333


Q ss_pred             eEEEEEEEEEeecCCCCCCCCCccceeeEEEEeccccccc
Q 020742          178 QQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  217 (322)
Q Consensus       178 ~~~~~~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~  217 (322)
                      +....+|.+....+.    + ...|..+++|+++++|+.+
T Consensus        85 ~~~~~~~~~~~~~~~----~-~~~e~~~~~W~~~~el~~l  119 (155)
T d2b06a1          85 RYIVICYKATEFSGT----L-QSSEEGEVSWVQKDQIPNL  119 (155)
T ss_dssp             EEEEEEEEECEEEEC----C-CCBTTBEEEEEEGGGGGGS
T ss_pred             eEEEEEEEEEecCCc----c-CCCchheEEEEEHHHhccC
Confidence            445555655433332    2 2457789999999999875

>d1jkna_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Narrow-leaved blue lupine (Lupinus angustifolius) [TaxId: 3871]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Narrow-leaved blue lupine (Lupinus angustifolius) [TaxId: 3871]

Probab=99.78  E-value=5e-19  Score=149.26  Aligned_cols=108  Identities=19%  Similarity=0.358  Sum_probs=77.2

Q ss_pred             cEEEEEEEeCCCCEEEEEEeeC-CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeee--e--e----------
Q 020742          108 PVTGAIILDETYERCILVKGWK-GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDE--F--I----------  172 (322)
Q Consensus       108 ~v~g~Iv~~~~~~kvLLvrr~~-~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~--~--~----------  172 (322)
                      +.||+||+|+++ +|||+||.. .|.|.||||+||.|||+++||+||++||||+++..+.....  +  .          
T Consensus        15 ~~Vg~vI~n~~~-~vLL~kR~~~~g~W~~PgG~ve~gEt~~~Aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (165)
T d1jkna_          15 RNVGICLMNNDK-KIFAASRLDIPDAWQMPQGGIDEGEDPRNAAIRELREETGVTSAEVIAEVPYWLTYDFPPKVREKLN   93 (165)
T ss_dssp             EEEEEEEECTTS-CEEEEEESSSTTCEECCEECCCTTCCHHHHHHHHHHHHTCCCSEEEEEECSSCEEEECCHHHHHHHH
T ss_pred             ccEEEEEEeCCC-EEEEEEEcCCCCcccCccceEcCCCChhHHHHHHHHHhhccccccccccccccccccccceeeceee
Confidence            577889998874 999999876 68999999999999999999999999999999875322111  0  0          


Q ss_pred             ---ecccCeEEEEEEEEEeecCCCCCCC----CCccceeeEEEEecccccc
Q 020742          173 ---EKIFGQQRVRLYIIAGVRDDTAFAP----QTKKEISEIAWQRLDELQP  216 (322)
Q Consensus       173 ---~~~~~~~~~~~y~~~~~~~~~~~~~----~~~~Ei~~~~Wv~ldeL~~  216 (322)
                         ......+..+.|++.....+.....    ....|+.+++|++++++++
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~E~~~~~W~~~~el~~  144 (165)
T d1jkna_          94 IQWGSDWKGQAQKWFLFKFTGQDQEINLLGDGSEKPEFGEWSWVTPEQLID  144 (165)
T ss_dssp             HHTCCCCSEEEECCEEEEECSCTTTCCSSCSSSSCCCEEEEEEECTTHHHH
T ss_pred             eeecCCccceeeEEEEEEEeCCCceeecCCCCCCCCeeEEeEECCHHHHHH
Confidence               0112234455555544433322211    1235899999999999987

>d1puna_ d.113.1.1 (A:) Nucleoside triphosphate pyrophosphorylase (MutT) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Nucleoside triphosphate pyrophosphorylase (MutT)
species: Escherichia coli [TaxId: 562]

Probab=99.77  E-value=2.2e-19  Score=144.99  Aligned_cols=106  Identities=19%  Similarity=0.273  Sum_probs=76.7

Q ss_pred             cccEEEEEEEeCCCCEEEEEEeeC----CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeeeee-cccCeEE
Q 020742          106 RVPVTGAIILDETYERCILVKGWK----GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIE-KIFGQQR  180 (322)
Q Consensus       106 ~v~v~g~Iv~~~~~~kvLLvrr~~----~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~~~-~~~~~~~  180 (322)
                      ++.++++||++++ ++|||+||..    +|.|+||||+++.|||+.+||+||++||||+++.....+..+.. ....+..
T Consensus         3 ~i~vav~ii~~~~-~~vLl~~R~~~~~~~g~W~~PgG~ve~gEs~~~a~~RE~~EE~gl~~~~~~~~~~~~~~~~~~~~~   81 (129)
T d1puna_           3 KLQIAVGIIRNEN-NEIFITRRAADAHMANKLEFPGGKIEMGETPEQAVVRELQEEVGITPQHFSLFEKLEYEFPDRHIT   81 (129)
T ss_dssp             EEEEEEEECBCTT-SCEEEBCCCSSCSCTTCCBCSCCSCTTTSCTTHHHHHHHHHTTCSCCCCCCCSEEEEEECSSEEEE
T ss_pred             ccEEEEEEEEECC-CEEEEEEecCCCCCCCcEECCcceecCCCchhHHHHHHHHHHhCCccccceeeeEEeeccccccee
Confidence            3456677777776 4999999865    58999999999999999999999999999999987544433322 2222344


Q ss_pred             EEEEEEEeecCCCCCCCCCccceeeEEEEeccccccc
Q 020742          181 VRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  217 (322)
Q Consensus       181 ~~~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~  217 (322)
                      .++|.+....+.    + ...|+.+++|++++++...
T Consensus        82 ~~~~~~~~~~~~----~-~~~E~~~~~W~~~~el~~~  113 (129)
T d1puna_          82 LWFWLVERWEGE----P-WGKEGQPGEWMSLVGLNAD  113 (129)
T ss_dssp             EEEEECCCCSSC----C-CTTSSSCCEEECGGGCCTT
T ss_pred             EEEEEEeeccCc----C-CCCccceEEEEEHHHcccC
Confidence            455555433322    2 2367788999999999763

>d2fkba1 d.113.1.2 (A:8-168) Hypothetical protein YfcD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Hypothetical protein YfcD
species: Escherichia coli [TaxId: 562]

Probab=99.77  E-value=2.5e-18  Score=144.34  Aligned_cols=125  Identities=19%  Similarity=0.251  Sum_probs=89.3

Q ss_pred             ccEEEEEEEeCCCCEEEEEEeeC-----CCcEEcc-cccCCCCCCHHHHHHHHHHHHhCCcccceeeeeeeeecc-cCeE
Q 020742          107 VPVTGAIILDETYERCILVKGWK-----GSSWSFP-RGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKI-FGQQ  179 (322)
Q Consensus       107 v~v~g~Iv~~~~~~kvLLvrr~~-----~~~w~fP-gG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~~~~~-~~~~  179 (322)
                      .+++.++|+|+++ +|||++|..     +|.|++| ||+++.|||+.+||+||++||||++...+..+..+.... ....
T Consensus        30 h~~v~v~v~~~~g-~vLl~rR~~~~~~~pg~w~~~~GG~ie~gEs~~~aa~REl~EE~Gi~~~~~~~~~~~~~~~~~~~~  108 (161)
T d2fkba1          30 HRATYIVVHDGMG-KILVQRRTETKDFLPGMLDATAGGVVQADEQLLESARREAEEELGIAGVPFAEHGQFYFEDKNCRV  108 (161)
T ss_dssp             EEEEEEEEECSSS-CEEEEEECSSCSSSTTCEESSBCCBCBTTCCHHHHHHHHHHHHHCCBSCCCEEEEEEEEEETTEEE
T ss_pred             EeEEEEEEEeCCC-CEEEEEecCccccccccccccccccccccCcHHHHHHHHHHHHhCCccceeEEEEEEEeecCCcEE
Confidence            3577888888875 999999854     6999886 899999999999999999999999987776666544332 2233


Q ss_pred             EEEEEEEEeecCCCCCCCCCccceeeEEEEecccccccCCCccchhhhhhhhhhhhhhHHHHHHHHHhc
Q 020742          180 RVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPASDDVISHGVTGLKLYMVAPFLASLKKWISAH  248 (322)
Q Consensus       180 ~~~~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~~~~~~~~~~~~~~~~~v~pf~~~L~~wi~~~  248 (322)
                      ...+|.+. ..+  .+.+ +++|+.+++|++++++.++..+.+            ...+..|..|++++
T Consensus       109 ~~~~~~~~-~~~--~~~~-~~~Ev~~~~w~~~~el~~~~~~~~------------P~~~~al~~~~~r~  161 (161)
T d2fkba1         109 WGALFSCV-SHG--PFAL-QEDEVSEVCWLTPEEITARCDEFT------------PDSLKALALWMKRN  161 (161)
T ss_dssp             EEEEEEEE-CCC--CCCC-CTTTEEEEEEECHHHHHTTGGGBC------------HHHHHHHHHHHHHC
T ss_pred             EEEEEEEE-ECC--CCcC-ChhHeeEEEEEeHHHHhhhhhccC------------CcHHHHHHHHHhcC
Confidence            34444442 222  2233 468999999999999987533221            12457778888763

>d1ktga_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.77  E-value=2.4e-18  Score=139.39  Aligned_cols=108  Identities=19%  Similarity=0.323  Sum_probs=75.9

Q ss_pred             ccEEEEEEEe--CCCCEEEEEEeeC-CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeeee----ecc-cCe
Q 020742          107 VPVTGAIILD--ETYERCILVKGWK-GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFI----EKI-FGQ  178 (322)
Q Consensus       107 v~v~g~Iv~~--~~~~kvLLvrr~~-~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~~----~~~-~~~  178 (322)
                      |+++|+||++  ++..++||+++.. .|.|.+|||+++.||++.+||+||++||||+++..+.....+.    ... ...
T Consensus         2 vraag~vv~~~~~~~~~~Ll~~r~~~~g~W~~PgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~   81 (137)
T d1ktga_           2 VKAAGLVIYRKLAGKIEFLLLQASYPPHHWTPPKGHVDPGEDEWQAAIRETKEEANITKEQLTIHEDCHETLFYEAKGKP   81 (137)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEEESSTTCCEESSEEECCTTCCHHHHHHHHHHHHHCCCGGGEEEEEEEEEEEEEEETTEE
T ss_pred             EEEEEEEEEEEcCCCEEEEEEEEcCCCCcEeCcccccccCCCHHHHHHHHHHHHhCCcceeeeeeeeeeeeeecCCCcce
Confidence            5678888875  3333789998865 7899999999999999999999999999999987644332211    111 222


Q ss_pred             EEEEEEEEEeecCCCCCCCCCccceeeEEEEeccccccc
Q 020742          179 QRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  217 (322)
Q Consensus       179 ~~~~~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~  217 (322)
                      ..+.+|++. ......  .....|+.+++|++++++++.
T Consensus        82 ~~~~~~~~~-~~~~~~--~~~~~E~~~~~W~~~~e~~~~  117 (137)
T d1ktga_          82 KSVKYWLAK-LNNPDD--VQLSHEHQNWKWCELEDAIKI  117 (137)
T ss_dssp             EEEEEEEEE-ECSCCC--CCCCTTEEEEEEECHHHHHHH
T ss_pred             EEEEEEEEE-ecCCCC--cCCCcceEEEEEEEHHHHHHh
Confidence            334444443 333332  233478999999999999863

>d2fb1a2 d.113.1.6 (A:3-149) Hypothetical protein BT0354, N-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: BT0354 N-terminal domain-like
domain: Hypothetical protein BT0354, N-terminal domain
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=99.76  E-value=1.4e-18  Score=144.13  Aligned_cols=108  Identities=21%  Similarity=0.195  Sum_probs=76.1

Q ss_pred             EEEEEEE--eCCCCEEEEEEeeC---CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeeeeecc--cCeEEE
Q 020742          109 VTGAIIL--DETYERCILVKGWK---GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKI--FGQQRV  181 (322)
Q Consensus       109 v~g~Iv~--~~~~~kvLLvrr~~---~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~~~~~--~~~~~~  181 (322)
                      +|.+||+  +++..+|||++|..   .|.|.+|||+|+.||++.+||+||++||||+++..+..+..+....  .+.+.+
T Consensus        12 ~Vd~Vi~~~~~~~~~vLLv~R~~~p~~g~W~lPGG~ie~~Es~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~v   91 (147)
T d2fb1a2          12 GIDCIIFGFNEGEISLLLLKRNFEPAMGEWSLMGGFVQKDESVDDAAKRVLAELTGLENVYMEQVGAFGAIDRDPGERVV   91 (147)
T ss_dssp             EEEEEEEEEETTEEEEEEEECSSSSSTTCEECEEEECCTTSCHHHHHHHHHHHHHCCCSCEEEEEEEECCTTSSSSSCEE
T ss_pred             EEEEEEEEEeCCcCEEEEEEccCCCCCCcEeCcEeeecCCCCHHHHHHHHHHHHhCCcccceeeeeEecCCcccCCCceE
Confidence            3444443  55444899999865   5899999999999999999999999999999988776665543222  223344


Q ss_pred             EEEEEEeecCCCCCCCCCccceeeEEEEecccccccC
Q 020742          182 RLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPAS  218 (322)
Q Consensus       182 ~~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~~  218 (322)
                      .+++.+.+....  .+...+|..+++|+++++++++.
T Consensus        92 ~~~~~~~~~~~~--~~~~~~e~~~~~W~~~~~lp~la  126 (147)
T d2fb1a2          92 SIAYYALININE--YDRELVQKHNAYWVNINELPALI  126 (147)
T ss_dssp             EEEEEEECCTTS--SCHHHHHHTTEEEEETTSCCCBS
T ss_pred             EEEEEEEecCCc--ccCCCcchhheEEecHHhchhcc
Confidence            443343443322  12334677889999999999853

>d1g0sa_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase
species: Escherichia coli [TaxId: 562]

Probab=99.75  E-value=4.9e-18  Score=148.80  Aligned_cols=127  Identities=13%  Similarity=0.072  Sum_probs=95.6

Q ss_pred             cccEEEEEEEeCCCCEEEEEEeeCC---------CcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeeeee-cc
Q 020742          106 RVPVTGAIILDETYERCILVKGWKG---------SSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIE-KI  175 (322)
Q Consensus       106 ~v~v~g~Iv~~~~~~kvLLvrr~~~---------~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~~~-~~  175 (322)
                      +-+++++++++++.++++|+++++.         ..|++|+|.+|+||++++||+||+.||||+.+..+..++.++. ++
T Consensus        56 ~~~~v~vl~~~~~~~~vlLvrQ~R~~~~~~~~~~~~lElPAG~id~gE~p~~aA~REL~EEtG~~~~~l~~l~~~~~spg  135 (209)
T d1g0sa_          56 RGHAAVLLPFDPVRDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGESVEDVARREAIEEAGLIVKRTKPVLSFLASPG  135 (209)
T ss_dssp             CCCEEEEEEEETTTTEEEEEEEECGGGGGGSSCSEEEECEEEECCTTCCHHHHHHHHHHHHHCCCCCCEEEEEEEESCTT
T ss_pred             cCCEEEEEEEEecCCeEEEEEEEeccccccCCCceEEeeceeecCCCcCHHHHHHHHHHhhhcccccceeeccccccCCc
Confidence            3467788888776669999999881         2689999999999999999999999999999998888887654 55


Q ss_pred             cCeEEEEEEEEEeecCCCC--CCCCCccceeeEEEEeccccccc--CCCcc-chhhhhhhhh
Q 020742          176 FGQQRVRLYIIAGVRDDTA--FAPQTKKEISEIAWQRLDELQPA--SDDVI-SHGVTGLKLY  232 (322)
Q Consensus       176 ~~~~~~~~y~~~~~~~~~~--~~~~~~~Ei~~~~Wv~ldeL~~~--~~~~~-~~~~~~~~~~  232 (322)
                      .....+++|++........  ....+++|..++.|++++++.++  ++++. ++++.++.++
T Consensus       136 ~~~e~~~~f~a~~~~~~~~~~~~~~de~E~iev~~v~~~e~~~~i~~g~I~da~ti~al~~~  197 (209)
T d1g0sa_         136 GTSERSSIMVGEVDATTASGIHGLADENEDIRVHVVSREQAYQWVEEGKIDNAASVIALQWL  197 (209)
T ss_dssp             TBCCEEEEEEEECCGGGCC--------CCSCEEEEEEHHHHHHHHHTTSSCBHHHHHHHHHH
T ss_pred             ccCCceEEEEEEEecccccCCCCCCCCCceeEEEEEeHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence            6778888988863322111  11234567778999999999884  66776 7777776443

>d1ryaa_ d.113.1.5 (A:) GDP-mannose mannosyl hydrolase NudD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: GDP-mannose mannosyl hydrolase NudD
domain: GDP-mannose mannosyl hydrolase NudD
species: Escherichia coli [TaxId: 562]

Probab=99.74  E-value=6.4e-18  Score=141.08  Aligned_cols=108  Identities=19%  Similarity=0.159  Sum_probs=75.0

Q ss_pred             ccEEEEEEEeCCCCEEEEEEeeC---CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccc--eeeeee--eee------
Q 020742          107 VPVTGAIILDETYERCILVKGWK---GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSK--LLNKDE--FIE------  173 (322)
Q Consensus       107 v~v~g~Iv~~~~~~kvLLvrr~~---~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~--l~~~~~--~~~------  173 (322)
                      +.++++||.++++ +|||++|.+   .|.|.+|||+++.|||+.+||+||++||||+++..  +..+..  +..      
T Consensus        18 ~~~v~~vi~~~~~-~vLL~kR~~~~~~g~W~lPGG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~   96 (160)
T d1ryaa_          18 LVSLDFIVENSRG-EFLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFERLTMAELGLRLPITAGQFYGVWQHFYDDNFSG   96 (160)
T ss_dssp             EEEEEEEEECTTS-CEEEEEECSSSSTTSEECCEEECCTTCCHHHHHHHHHHHHHSSCCCGGGSEEEEEEEEEESSBTTB
T ss_pred             EEEEEEEEEeCCC-eEEEEEeCCCCCCCcEecccccccCCCcHHHHHHHHHHHHhCceEeeeeeeEEEEEEEeccccccC
Confidence            3466778888764 999999876   58999999999999999999999999999998764  222222  111      


Q ss_pred             cccCeEEEEEEEEEeecCCCCCCCCCccceeeEEEEeccccccc
Q 020742          174 KIFGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  217 (322)
Q Consensus       174 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~  217 (322)
                      .....+.+.+++........  .....+|+.+++|+++++++.+
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~--~~~~~~E~~e~~W~~~~el~~~  138 (160)
T d1ryaa_          97 TDFTTHYVVLGFRFRVSEEE--LLLPDEQHDDYRWLTSDALLAS  138 (160)
T ss_dssp             SSSCEEEEEEEEEEECCGGG--CCCCSSSEEEEEEECHHHHHHC
T ss_pred             CCcceEEEEEEEEEEecCCC--ccCCCcceEEEEEEEHHHhhcC
Confidence            11122333333333333321  2334678999999999999764

>d1xsba_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=2.4e-17  Score=136.56  Aligned_cols=129  Identities=19%  Similarity=0.280  Sum_probs=87.0

Q ss_pred             ccEEEEEEEe--------CCCCEEEEEEeeC-CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeee-----e
Q 020742          107 VPVTGAIILD--------ETYERCILVKGWK-GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEF-----I  172 (322)
Q Consensus       107 v~v~g~Iv~~--------~~~~kvLLvrr~~-~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~-----~  172 (322)
                      +..+|+|+++        .+..++||+++.. .+.|.+|||+++.|||+.+||+||++||||+++..+..+..+     .
T Consensus         8 ~~~~g~i~f~~~~~~~~~~~~~~~LL~~~~~~~~~W~lPgG~ie~gEt~~~aa~REl~EEtG~~~~~~~~~~~~~~~~~~   87 (153)
T d1xsba_           8 LRACGLIIFRRCLIPKVDNNAIEFLLLQASDGIHHWTPPKGHVEPGEDDLETALRATQEEAGIEAGQLTIIEGFKRELNY   87 (153)
T ss_dssp             EEEEEEEEEEECSSCSSSSTTEEEEEEEESSTTCCEECCEEECCSSSCHHHHHHHHHHHTTSCCTTTEEECSSCCEEEEE
T ss_pred             hheeEEEEEeccccccccCCCCEEEEEEecCCCCcEECCeeecCCCCCHHHHHHHHHHHHhCCccceeeeeccceeeecc
Confidence            4567899884        2335999999876 568999999999999999999999999999998764443321     1


Q ss_pred             ecccCeEEEEEEEEEeecCCCCCCCCCccceeeEEEEecccccccCCCccchhhhhhhhhhhhhhHHHHHHHHHhc
Q 020742          173 EKIFGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPASDDVISHGVTGLKLYMVAPFLASLKKWISAH  248 (322)
Q Consensus       173 ~~~~~~~~~~~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~~~~~~~~~~~~~~~~~v~pf~~~L~~wi~~~  248 (322)
                      ..........+|++........  ....+|+.+++|++++++.++..           +-.....+....++|..+
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~E~~~~~W~~~~e~~~~~~-----------~~~~~~iL~~~~~~L~~~  150 (153)
T d1xsba_          88 VARNKPKTVIYWLAEVKDYDVE--IRLSHEHQAYRWLGLEEACQLAQ-----------FKEMKAALQEGHQFLCSI  150 (153)
T ss_dssp             ESSSCEEEEEEEEEEESCTTCC--CCCCTTEEEEEEECHHHHHHHTC-----------SHHHHHHHHHHHHHHTTS
T ss_pred             cccCceeEEEEEEEEEeecccc--cCCCcceeEEEEEEHHHHHHhcC-----------CHHHHHHHHHHHHHHhcc
Confidence            1222233444454443333322  33457899999999999987421           112234556666676654

>d2fvva1 d.113.1.1 (A:8-142) Diphosphoinositol polyphosphate phosphohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diphosphoinositol polyphosphate phosphohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=4.3e-18  Score=138.33  Aligned_cols=106  Identities=20%  Similarity=0.267  Sum_probs=73.5

Q ss_pred             EEEEEEEeCC-CCEEEEEEeeC-CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeeeeecccC-eEEEEEEE
Q 020742          109 VTGAIILDET-YERCILVKGWK-GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFG-QQRVRLYI  185 (322)
Q Consensus       109 v~g~Iv~~~~-~~kvLLvrr~~-~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~~~~~~~-~~~~~~y~  185 (322)
                      ++|+|+++.+ .+.+||+++.+ ++.|+||||++++|||+.+||+||++||||+.+........+...... ...+..++
T Consensus        13 ~a~~vv~~~~~~~~~lL~~~~~~~~~W~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (135)
T d2fvva1          13 RAACLCFRSESEEEVLLVSSSRHPDRWIVPGGGMEPEEEPSVAAVREVCEEAGVKGTLGRLVGIFENQERKHRTYVYVLI   92 (135)
T ss_dssp             EEEEEEESSTTCCEEEEEECSSCTTSEECSEEECCTTCCHHHHHHHHHHHHHCEEEEEEEEEEEEEETTTTEEEEEEEEE
T ss_pred             EEEEEEEEecCCCEEEEEEEeCCCCcEECCccccCCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCccEEEEEEE
Confidence            4566666433 34677777766 789999999999999999999999999999998865544444332222 23333333


Q ss_pred             EEeecCCCCCCCCCccceeeEEEEeccccccc
Q 020742          186 IAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  217 (322)
Q Consensus       186 ~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~  217 (322)
                      +......   .+...+|+.+++|++++++.++
T Consensus        93 ~~~~~~~---~~~~~~e~~~~~W~~~~e~~~~  121 (135)
T d2fvva1          93 VTEVLED---WEDSVNIGRKREWFKIEDAIKV  121 (135)
T ss_dssp             EEEECSS---CHHHHHHCCCEEEEEHHHHHHH
T ss_pred             EEeecCC---CCCCCCceeEEEEEEHHHHHHH
Confidence            3333332   2334577889999999999873

>d1irya_ d.113.1.1 (A:) 7,8-dihydro-8-oxoguanine triphosphatase Hmth1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: 7,8-dihydro-8-oxoguanine triphosphatase Hmth1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=2.3e-17  Score=137.59  Aligned_cols=100  Identities=22%  Similarity=0.309  Sum_probs=67.5

Q ss_pred             EEEEEeCCCCEEEEEEeeC---CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeee--eeecccCe-EEEEEE
Q 020742          111 GAIILDETYERCILVKGWK---GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDE--FIEKIFGQ-QRVRLY  184 (322)
Q Consensus       111 g~Iv~~~~~~kvLLvrr~~---~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~--~~~~~~~~-~~~~~y  184 (322)
                      .++|.+ + ++|||++|.+   .|.|.+|||+++.|||+.+||+||++||||+++..+..+..  +....... ..+.+|
T Consensus         9 ~v~i~~-~-~~vLL~~r~~~~~~g~W~lPGG~ve~gEt~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (156)
T d1irya_           9 LVLVLQ-P-QRVLLGMKKRGFGAGRWNGFGGKVQEGETIEDGARRELQEESGLTVDALHKVGQIVFEFVGEPELMDVHVF   86 (156)
T ss_dssp             EECEEC-S-SEEEEEEESSSSSBTCEECBCCBCCTTCCHHHHHHHHHHHHHSCCBSCCCEEEEEEEEETTCSCEEEEEEE
T ss_pred             EEEEEE-C-CEEEEEEecCCCCCCEEECcEeEecCCCCHHHHHHHHHHHHHCCcccceEEEEEEEEEcCCCCEEEEEEEE
Confidence            344444 4 3999999876   58999999999999999999999999999999886544433  22222222 223333


Q ss_pred             EEEeecCCCCCCCCCccceeeEEEEeccccccc
Q 020742          185 IIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  217 (322)
Q Consensus       185 ~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~  217 (322)
                      .+....+    .+.. .+..++.|+++++++..
T Consensus        87 ~~~~~~~----~~~~-~ee~~~~W~~~~~l~~~  114 (156)
T d1irya_          87 CTDSIQG----TPVE-SDEMRPCWFQLDQIPFK  114 (156)
T ss_dssp             CCCCBCS----CCCC-CSSEEEEEEETTCCCST
T ss_pred             EEEeecC----cccC-CchhheEEeEHHHCCcC
Confidence            3322221    2333 34467899999999874

>d2fmla2 d.113.1.6 (A:3-204) Hypothetical protein EF2700, N-terminal domain {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: BT0354 N-terminal domain-like
domain: Hypothetical protein EF2700, N-terminal domain
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.71  E-value=4e-17  Score=142.15  Aligned_cols=112  Identities=19%  Similarity=0.340  Sum_probs=78.6

Q ss_pred             CCcccccEEEEEE--EeCCCC--EEEEEEeeC---CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccc--eeeeeeee
Q 020742          102 SYKVRVPVTGAII--LDETYE--RCILVKGWK---GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSK--LLNKDEFI  172 (322)
Q Consensus       102 ~y~~~v~v~g~Iv--~~~~~~--kvLLvrr~~---~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~--l~~~~~~~  172 (322)
                      .|.+...++.++|  ++.+++  +|||++|..   .|.|.||||+|+.|||+.+||+||++||||+++..  +..+..+.
T Consensus        32 ~y~~P~v~vd~vi~~~~~~~~~l~VLLv~R~~~p~~g~W~lPGG~ve~gEs~~eaa~REl~EEtGl~~~~~~l~~~~~~~  111 (202)
T d2fmla2          32 EYEKPSLTVDMVLLCYNKEADQLKVLLIQRKGHPFRNSWALPGGFVNRNESTEDSVLRETKEETGVVISQENIEQLHSFS  111 (202)
T ss_dssp             CCCCCEEEEEEEEEEEETTTTEEEEEEEEECSSSSTTCEECCEEECCTTSCHHHHHHHHHHHHHCCCCCGGGEEEEEEEC
T ss_pred             CCCCCccEEEEEEEEEecCCCeeEEEEEEecCCCCCCcEECCEEeecCCCCHHHHhhhhhHhhcCeeeecceeeeeeecc
Confidence            4665444555554  344322  799999976   58999999999999999999999999999998764  44454443


Q ss_pred             ecc--cCeEEEEEEEEEeecCCCCCCCCCccceeeEEEEecccccc
Q 020742          173 EKI--FGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQP  216 (322)
Q Consensus       173 ~~~--~~~~~~~~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~  216 (322)
                      ...  .....+.+++++.+....   ....+|+.+++|+++++++.
T Consensus       112 ~~~r~~~~~~i~~~~~~~~~~~~---~~~~~e~~~~~Wf~ld~l~~  154 (202)
T d2fmla2         112 RPDRDPRGWVVTVSYLAFIGEEP---LIAGDDAKEVHWFNLERHGQ  154 (202)
T ss_dssp             CTTSSTTSSEEEEEEEEECCCCC---CCCCTTEEEEEEEEEEEETT
T ss_pred             cCCccccceEEEEEEEEEeCCCC---cCCCcceeeEEEEeHHHCcc
Confidence            221  223344555554554432   33467899999999999986

>d1k2ea_ d.113.1.1 (A:) Hypothetical protein PAE3301 {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein PAE3301
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.71  E-value=4.3e-18  Score=140.02  Aligned_cols=107  Identities=20%  Similarity=0.295  Sum_probs=67.8

Q ss_pred             EEEEEEEeCCCCEEEEEEeeCCCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeeeeec---ccCeEEEEEEE
Q 020742          109 VTGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEK---IFGQQRVRLYI  185 (322)
Q Consensus       109 v~g~Iv~~~~~~kvLLvrr~~~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~~~~---~~~~~~~~~y~  185 (322)
                      ++++||++++  +|||++|...|.|.||||+++.||++.+||+||++||||+++........+...   .........+.
T Consensus         3 ~a~~vi~~d~--kvLl~~r~~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (152)
T d1k2ea_           3 VTSGVLVENG--KVLLVKHKRLGVYIYPGGHVEHNETPIEAVKREFEEETGIVVEPIGFTYGIIDENAVERPMPLVILEE   80 (152)
T ss_dssp             EEEEECEETT--EEEEEECTTTCSEECSEEECCTTCCHHHHHHHHHHHHHSEEEEECCCCCCCBSSSEEECCCCSEEEEE
T ss_pred             EEEEEEEECC--EEEEEEEcCCCeEECCeeEEeCCccHHHHHHHHHHHHHCCceeeeEEEEEEeccccccCcceEEEEEE
Confidence            3456666653  999999887899999999999999999999999999999988653322211110   00000001111


Q ss_pred             EEeecCCCC-------CCCCCccceeeEEEEeccccccc
Q 020742          186 IAGVRDDTA-------FAPQTKKEISEIAWQRLDELQPA  217 (322)
Q Consensus       186 ~~~~~~~~~-------~~~~~~~Ei~~~~Wv~ldeL~~~  217 (322)
                      .........       ......+|+.+++|++++++.++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~  119 (152)
T d1k2ea_          81 VVKYPEETHIHFDLIYLVKRVGGDLKNGEWIDVREIDRI  119 (152)
T ss_dssp             EEECSSCEEEEEEEEEEEEEEEECCCSCEEEEGGGGGGS
T ss_pred             EEecCCCceEEEEEeEeeecCCCCcceEEEeEHHHHhhC
Confidence            111110000       00123567889999999999875

>d2azwa1 d.113.1.1 (A:2-148) Hypothetical protein EF1141 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein EF1141
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.71  E-value=2.4e-17  Score=135.43  Aligned_cols=110  Identities=18%  Similarity=0.208  Sum_probs=73.2

Q ss_pred             cCCcccccEEEEEEEeCCCCEEEEEEeeCCCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeeee---e-ccc
Q 020742          101 TSYKVRVPVTGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFI---E-KIF  176 (322)
Q Consensus       101 ~~y~~~v~v~g~Iv~~~~~~kvLLvrr~~~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~~---~-~~~  176 (322)
                      ..|..+. .+++||+++++..+||+++ ..|.|.||||+|+.||++.+||+||++||||+++.....+..+.   . ...
T Consensus        12 ~~y~~r~-~~~~vi~~~~~~~lll~~~-~~~~w~lPgG~ie~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~   89 (147)
T d2azwa1          12 LTYQTRY-AAYIIVSKPENNTMVLVQA-PNGAYFLPGGEIEGTETKEEAIHREVLEELGISVEIGCYLGEADEYFYSNHR   89 (147)
T ss_dssp             SCCEECC-EEEEECEEGGGTEEEEEEC-TTSCEECSEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEEEEEEETTT
T ss_pred             cccCCCC-eEEEEEEECCCCEEEEEEc-CCCeEECcEeEeCCCCCHHHHHHHHHHhhhceeeeeeeEEEEEEEEeeeccC
Confidence            4455554 4566677766556666654 46899999999999999999999999999999987644332221   1 111


Q ss_pred             C---eEEEEEEEEEeecCCCCCCCCCccceeeEEEEecccccc
Q 020742          177 G---QQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQP  216 (322)
Q Consensus       177 ~---~~~~~~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~  216 (322)
                      .   .....+|.+......    +...+|+.++.|++++++.+
T Consensus        90 ~~~~~~~~~~~~~~~~~~~----~~~~~e~~~~~W~~~~e~~~  128 (147)
T d2azwa1          90 QTAYYNPGYFYVANTWRQL----SEPLERTNTLHWVAPEEAVR  128 (147)
T ss_dssp             TEEEEEEEEEEEEEEEEEC----SSCC-CCSEEEEECHHHHHH
T ss_pred             CceEEEEEEEEEEEecccc----CCCCccceEEEEEEHHHHHH
Confidence            1   123334444433332    33456888999999999876

>d1hzta_ d.113.1.2 (A:) Isopentenyl diphosphate isomerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Isopentenyl diphosphate isomerase
species: Escherichia coli [TaxId: 562]

Probab=99.68  E-value=8.4e-17  Score=134.06  Aligned_cols=104  Identities=10%  Similarity=0.196  Sum_probs=74.0

Q ss_pred             cEEEEEEEeCCCCEEEEEEeeC-----CCcEEc-ccccCCCCCCHHHHHHHHHHHHhCCcccceeeee---eeeec-c--
Q 020742          108 PVTGAIILDETYERCILVKGWK-----GSSWSF-PRGKKNKDEEDHACAIREVQEETGFDVSKLLNKD---EFIEK-I--  175 (322)
Q Consensus       108 ~v~g~Iv~~~~~~kvLLvrr~~-----~~~w~f-PgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~---~~~~~-~--  175 (322)
                      .+++++|+|+++ ++||+||..     +|.|.+ |||+++.|||+.+||+||+.||||+++.....+.   .|... .  
T Consensus         3 ra~~v~i~n~~g-~vLl~kRs~~k~~~pg~w~~~pgG~ve~gEt~~eaa~RE~~EE~Gi~~~~~~~~~~~~~y~~~~~~~   81 (153)
T d1hzta_           3 LAFSSWLFNAKG-QLLVTRRALSKKAWPGVWTNSVCGHPQLGESNEDAVIRRCRYELGVEITPPESIYPDFRYRATDPSG   81 (153)
T ss_dssp             ECEEEEEECTTC-CEEEEEECTTCSSSTTCEEESEEECCCTTCCHHHHHHHHHHHHHCCCBSCCEEEETTCEEEEECTTS
T ss_pred             eEEEEEEEECCC-EEEEEEeCCCCCCCCCceecccCceeecCCcHHHHHHHHHHHHcCceeecccceecccccccccccc
Confidence            367888999885 999999853     688987 9999999999999999999999999987543322   12111 1  


Q ss_pred             -cCeEEEEEEEEEeecCCCCCCCCCccceeeEEEEecccccc
Q 020742          176 -FGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQP  216 (322)
Q Consensus       176 -~~~~~~~~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~  216 (322)
                       .......+|.+ .....  +.+ +++|+.+++|+++++|.+
T Consensus        82 ~~~~~~~~~~~~-~~~~~--~~~-~~~Ev~~~~W~~~~el~~  119 (153)
T d1hzta_          82 IVENEVCPVFAA-RTTSA--LQI-NDDEVMDYQWCDLADVLH  119 (153)
T ss_dssp             CEEEEECCEEEE-EBCSC--CCC-CTTTEEEEEEECHHHHHH
T ss_pred             ccceeEEEEEEE-eeCCC--ccC-ChhheeEEEEeeHHHHHH
Confidence             11122233433 23332  333 457999999999999976

>d2o5fa1 d.113.1.2 (A:7-168) Hypothetical protein DR0079 {Deinococcus radiodurans str. R1 (Deinococcus radiodurans R1) [TaxId: 243230]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Hypothetical protein DR0079
species: Deinococcus radiodurans str. R1 (Deinococcus radiodurans R1) [TaxId: 243230]

Probab=99.65  E-value=1.1e-16  Score=134.34  Aligned_cols=107  Identities=16%  Similarity=0.130  Sum_probs=75.7

Q ss_pred             cccEEEEEEEeCCCCEEEEEEeeC-----CCcEEcc-cccCCCCCCHHHHHHHHHHHHhCCcccceee--eeeeeecc-c
Q 020742          106 RVPVTGAIILDETYERCILVKGWK-----GSSWSFP-RGKKNKDEEDHACAIREVQEETGFDVSKLLN--KDEFIEKI-F  176 (322)
Q Consensus       106 ~v~v~g~Iv~~~~~~kvLLvrr~~-----~~~w~fP-gG~ie~gEs~~eaA~REv~EETGl~v~~l~~--~~~~~~~~-~  176 (322)
                      ..++++++|+|+++ ++||.+|..     +|.|++| ||+++.|||+.+||+||++||||+++.....  +..+.... .
T Consensus        27 ~~~~v~~~v~~~~g-~~Ll~rR~~~k~~~pg~w~~~~GG~ve~gEs~~eaa~REl~EE~Gl~~~~~~~~~~~~~~~~~~~  105 (162)
T d2o5fa1          27 RVRVVNAFLRNSQG-QLWIPRRSPSKSLFPNALDVSVGGAVQSGETYEEAFRREAREELNVEIDALSWRPLASFSPFQTT  105 (162)
T ss_dssp             GSEEEEEEEECTTS-CEEEEEC-------CCSBCCSEEEECBTTCCHHHHHHHHHHHHHCCCGGGSEEEEEEEECTTTSS
T ss_pred             eEEEEEEEEEcCCC-CEEEEEeccCccccccccccccCCcccCCCChhhhhhhhhhheeCcceeeEEEEEEEEecccccc
Confidence            44688899998885 899988743     6999887 9999999999999999999999999876433  22222111 2


Q ss_pred             CeEEEEEEEEEeecCCCCCCCCCccceeeEEEEeccccccc
Q 020742          177 GQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  217 (322)
Q Consensus       177 ~~~~~~~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~  217 (322)
                      ....+.+|.+.. ..  .+.+ +++|+.++.|++++++.++
T Consensus       106 ~~~~~~~~~~~~-~~--~~~~-~~~Ev~~~~W~~~eel~~~  142 (162)
T d2o5fa1         106 LSSFMCVYELRS-DA--TPIF-NPNDISGGEWLTPEHLLAR  142 (162)
T ss_dssp             CSSEEEEEEEEC-SS--CCCC-CTTTCSEEEEECHHHHHHH
T ss_pred             ceEEEEEEEEec-CC--CccC-ChhHeeEEEEeeHHHHHHH
Confidence            223344554432 22  2223 4578999999999999873

>d1nqza_ d.113.1.1 (A:) Coenzyme A pyrophosphatase {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Coenzyme A pyrophosphatase
species: Deinococcus radiodurans [TaxId: 1299]

Probab=99.65  E-value=1.5e-16  Score=136.97  Aligned_cols=108  Identities=19%  Similarity=0.170  Sum_probs=75.4

Q ss_pred             EEEEEEEeCCCCEEEEEEeeC-----CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeeeee-cccCeEEEE
Q 020742          109 VTGAIILDETYERCILVKGWK-----GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIE-KIFGQQRVR  182 (322)
Q Consensus       109 v~g~Iv~~~~~~kvLLvrr~~-----~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~~~-~~~~~~~~~  182 (322)
                      +|.+++++++..+|||++|..     +|.|+||||++|.||++.+||+||++||||++...+..++.+.. ....+..++
T Consensus        34 aVlv~~~~~~~~~vll~kR~~~l~~h~G~~~fPGG~~e~~E~~~~aAlRE~~EE~Gl~~~~~~~lg~l~~~~~~~~~~V~  113 (187)
T d1nqza_          34 AVLVALTREADPRVLLTVRSSELPTHKGQIAFPGGSLDAGETPTQAALREAQEEVALDPAAVTLLGELDDVFTPVGFHVT  113 (187)
T ss_dssp             EEEEEEESSSSCBBCEEEEC------CCCEECSEEECCTTCCHHHHHHHHHHHHHCCCGGGCEEEEECCCEEETTTEEEE
T ss_pred             EEEEEEEECCCCEEEEEEcCCCCCCCCCeEeCCccccccCCchhHHHHHHHHHhhccccceeEEeecccceeeccccEEE
Confidence            334444544445899999865     79999999999999999999999999999999887665554321 122234555


Q ss_pred             EEEEEeecCCCCCCCCCccceeeEEEEeccccccc
Q 020742          183 LYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  217 (322)
Q Consensus       183 ~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~  217 (322)
                      .|++........ ......|+.++.|+++++|...
T Consensus       114 p~v~~l~~~~~~-~~~~~~EV~~v~~vpl~~L~~~  147 (187)
T d1nqza_         114 PVLGRIAPEALD-TLRVTPEVAQIITPTLAELRAV  147 (187)
T ss_dssp             EEEEEECGGGGG-GCCCCTTEEEEECCBHHHHHHS
T ss_pred             EEEEEECCcccc-ccccCCcceEEEeccHHHHhcC
Confidence            555432222211 2334679999999999998763

>d1viua_ d.113.1.1 (A:) ADP-ribose pyrophosphatase homologue YffH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase homologue YffH
species: Escherichia coli [TaxId: 562]

Probab=99.64  E-value=6.9e-16  Score=132.89  Aligned_cols=122  Identities=15%  Similarity=0.179  Sum_probs=89.4

Q ss_pred             ccEEEEEEEeCCCCEEEEEEeeC----------CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeeeee-cc
Q 020742          107 VPVTGAIILDETYERCILVKGWK----------GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIE-KI  175 (322)
Q Consensus       107 v~v~g~Iv~~~~~~kvLLvrr~~----------~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~~~-~~  175 (322)
                      -++|++|+++.+.+++||+++++          ...|++|||.++ ||++++||+||+.||||+.+..+..++.++. ++
T Consensus        43 ~~aV~Vl~~~~~~~~vllvrQ~R~~v~~~~~~~~~~~e~paG~~d-~e~p~~aA~REL~EEtG~~~~~~~~lg~~~~spG  121 (189)
T d1viua_          43 GNGATILLYNTKKKTVVLIRQFRVATWVNGNESGQLIESCAGLLD-NDEPEVCIRKEAIEETGYEVGEVRKLFELYMSPG  121 (189)
T ss_dssp             CCEEEEEEEETTTTEEEEEEEECHHHHTTTCSSCEEEECEEEECT-TSCHHHHHHHHHHHHHSCCCCCCEEEEEEESCTT
T ss_pred             CCEEEEEEEEcCCCEEEEEEeeccceeeccCCCcceecCcEEecC-CCCHHHHHHHHHHHhhCCcceEEEEcceeecCcc
Confidence            46788888886656999999986          136788999988 6778999999999999999998888877543 55


Q ss_pred             cCeEEEEEEEEEeecCCCC-CCCCCccceeeEEEEeccccccc--CCCcc-chhhhhh
Q 020742          176 FGQQRVRLYIIAGVRDDTA-FAPQTKKEISEIAWQRLDELQPA--SDDVI-SHGVTGL  229 (322)
Q Consensus       176 ~~~~~~~~y~~~~~~~~~~-~~~~~~~Ei~~~~Wv~ldeL~~~--~~~~~-~~~~~~~  229 (322)
                      .....+++|++........ ....+++|..++.|++++++.++  ++++. +.++.++
T Consensus       122 ~~~e~~~~f~a~~~~~~~~~~~~~~e~E~i~v~~~~~~e~~~~i~~g~i~da~ti~al  179 (189)
T d1viua_         122 GVTELIHFFIAEYSDNQRANAGGGVEDEDIEVLELPFSQALEMIKTGEIRDGKTVLLL  179 (189)
T ss_dssp             TBCCEEEEEEEECCTTCC---------CCEEEEEEEHHHHHHHHHHTSCCBHHHHHHH
T ss_pred             ccCceEEEEEEEECCcccccCCCCCCCccEEEEEEEHHHHHHHHHcCCCCcHHHHHHH
Confidence            7778899998865443211 12234567789999999999884  56665 5566554

>d1rrqa2 d.113.1.3 (A:234-360) Adenine glycosylase MutY, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutY C-terminal domain-like
domain: Adenine glycosylase MutY, C-terminal domain
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.56  E-value=1.1e-14  Score=117.01  Aligned_cols=102  Identities=19%  Similarity=0.227  Sum_probs=69.2

Q ss_pred             ccccEEEEEEEeCCCCEEEEEEeeC----CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeeeeecccCe--
Q 020742          105 VRVPVTGAIILDETYERCILVKGWK----GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQ--  178 (322)
Q Consensus       105 ~~v~v~g~Iv~~~~~~kvLLvrr~~----~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~~~~~~~~--  178 (322)
                      ++|+++++||.++++ ++||.||..    +|+|+||+|+++.+|+ .+++.||++||+|+++.....+..+. +.+.+  
T Consensus         2 k~v~v~~~vi~~~~g-~iLl~kR~~~~~~~GlWefP~g~~e~~~~-~e~l~rel~ee~gi~v~~~~~l~~~~-H~fsh~~   78 (127)
T d1rrqa2           2 KQVPLAVAVLADDEG-RVLIRKRDSTGLLANLWEFPSCETDGADG-KEKLEQMVGEQYGLQVELTEPIVSFE-HAFSHLV   78 (127)
T ss_dssp             EEEEEEEEEEEESSS-EEEEEECCSSSTTTTCEECCEEECTTTCC-HHHHHHTTC----CEEEECSCCEEEE-EECSSEE
T ss_pred             CEEEEEEEEEEECCC-EEEEEECCCCCCCCCceecccccccCCCC-HHHHHHHhhhhcceEEEeccccccce-EecCCeE
Confidence            356778888888874 999999866    6999999999997776 78999999999999887644444322 22333  


Q ss_pred             EEEEEEEEEeecCCCCCCCCCccceeeEEEEeccccccc
Q 020742          179 QRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  217 (322)
Q Consensus       179 ~~~~~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~  217 (322)
                      ..+++|.+....+.        .+..++.|++++++..+
T Consensus        79 ~~~~~~~~~~~~~~--------~~~~~~~Wv~~~el~~~  109 (127)
T d1rrqa2          79 WQLTVFPGRLVHGG--------PVEEPYRLAPEDELKAY  109 (127)
T ss_dssp             EEEEEEEEEEECCS--------CCCTTEEEEEGGGGGGS
T ss_pred             EEEEEEEEEECCCC--------ccccceEEeeHHHHhHC
Confidence            34556666544332        12346889999999874

>d1q33a_ d.113.1.1 (A:) NUDT9 (mitochondrial ADP-ribose pyrophosphatase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: NUDT9 (mitochondrial ADP-ribose pyrophosphatase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=5.1e-12  Score=115.24  Aligned_cols=97  Identities=12%  Similarity=0.193  Sum_probs=66.3

Q ss_pred             EEEEEEeeCCCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeee--------------------eeeeecc---cC
Q 020742          121 RCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNK--------------------DEFIEKI---FG  177 (322)
Q Consensus       121 kvLLvrr~~~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~--------------------~~~~~~~---~~  177 (322)
                      +|||++|...+.|.||||+|+.||++.+||+||+.||||+.+......                    ..+....   ..
T Consensus       140 qvLlIkR~d~g~WaLPGG~Vd~GEs~~~Aa~REl~EETGl~~~~~~~~~~~~~~~l~~l~~~~~~~~y~gyvddprntd~  219 (292)
T d1q33a_         140 QFVAIKRKDCGEWAIPGGMVDPGEKISATLKREFGEEALNSLQKTSAEKREIEEKLHKLFSQDHLVIYKGYVDDPRNTDN  219 (292)
T ss_dssp             EEEEEECTTTCSEECCCEECCTTCCHHHHHHHHHHHHHSCGGGSCSSHHHHHHHHHHHHTTTSEEEEEEEECCCTTCCSS
T ss_pred             EEEEEEecCCCcEeCCcccCCCCCCHHHHHHHHHHHHhCcccccccccccccccceeeeccccccccccccccccCCCCC
Confidence            699999988899999999999999999999999999999987642111                    0011111   11


Q ss_pred             eEEE-EEEEEEeecCC--CCCCCCCccceeeEEEEeccccccc
Q 020742          178 QQRV-RLYIIAGVRDD--TAFAPQTKKEISEIAWQRLDELQPA  217 (322)
Q Consensus       178 ~~~~-~~y~~~~~~~~--~~~~~~~~~Ei~~~~Wv~ldeL~~~  217 (322)
                      .... .+|.+......  ....+...+|+.+++|+++++++.+
T Consensus       220 aw~etva~~~h~~~~~~~~~~~l~~~dEa~~v~W~~vde~~~L  262 (292)
T d1q33a_         220 AWMETEAVNYHDETGEIMDNLMLEAGDDAGKVKWVDINDKLKL  262 (292)
T ss_dssp             EEEEEEEEEEEESSSTTTTTCCCCCCTTCSEEEEEECCTTCCC
T ss_pred             CEEEEEEEEEEEcccccccccccCCCCchheEEEEEhhccccc
Confidence            2222 33444333222  1223445688999999999999874

>d1u20a1 d.113.1.1 (A:14-209) U8 snorna-binding protein x29 {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: U8 snorna-binding protein x29
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.31  E-value=5.1e-12  Score=108.73  Aligned_cols=94  Identities=17%  Similarity=0.195  Sum_probs=60.9

Q ss_pred             EEEEEEeeCCCcEEcccccCCCCCC-HHHHHHHHHHHHhCCcccceee--eee---eeecccCeEEEEEEEEEeecCCC-
Q 020742          121 RCILVKGWKGSSWSFPRGKKNKDEE-DHACAIREVQEETGFDVSKLLN--KDE---FIEKIFGQQRVRLYIIAGVRDDT-  193 (322)
Q Consensus       121 kvLLvrr~~~~~w~fPgG~ie~gEs-~~eaA~REv~EETGl~v~~l~~--~~~---~~~~~~~~~~~~~y~~~~~~~~~-  193 (322)
                      .|||++|. .|.|+||||+++.||+ .++||.||+.||||+.+..+..  ...   +..........++| +..+.... 
T Consensus        44 ~vl~~~r~-~g~~~~pgg~~~~~e~~~~~~~~re~~ee~g~~~~~~~l~~~~~~~~~~~~~~~~~v~~fy-~~~~~~~~l  121 (196)
T d1u20a1          44 VLLMMMRF-DGRLGFPGGFVDTRDISLEEGLKRELEEELGPALATVEVTEDDYRSSQVREHPQKCVTHFY-IKELKLEEI  121 (196)
T ss_dssp             EEEEEEET-TSCEECSEEEECTTTSCHHHHHHHHHHHHHCGGGGGCCCCGGGEEEEEEECTTSCEEEEEE-EEECCHHHH
T ss_pred             EEEEEEec-CCcEECCccccCCCCCcHHHHHHHHHHHHhCccceeEEEEeeEEEEeccCCCCCEEEEEEE-EEEcchHHh
Confidence            56666665 6899999999999996 5789999999999998876322  221   11112223334444 44332110 


Q ss_pred             ------CC-CCCCccceeeEEEEecccccc
Q 020742          194 ------AF-APQTKKEISEIAWQRLDELQP  216 (322)
Q Consensus       194 ------~~-~~~~~~Ei~~~~Wv~ldeL~~  216 (322)
                            .. ......|+.++.|+++.++.+
T Consensus       122 ~~~e~~~~~a~~~~~E~~~~~wVPl~~L~d  151 (196)
T d1u20a1         122 ERIEAEAVNAKDHGLEVMGLIRVPLYTLRD  151 (196)
T ss_dssp             HHHHHHHTTSTTBTTTEEEEEECCCSBCTT
T ss_pred             hhhhhcccccCcCCccccceeEEeHHHhcc
Confidence                  00 112346889999999999866

>d1x51a1 d.113.1.3 (A:8-149) A/G-specific adenine DNA glycosylase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutY C-terminal domain-like
domain: A/G-specific adenine DNA glycosylase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=2.8e-10  Score=92.07  Aligned_cols=107  Identities=14%  Similarity=0.154  Sum_probs=68.4

Q ss_pred             cccEEEEEEEeC--CCCEEEEEEeeC----CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcc--cceeeeeeeee-ccc
Q 020742          106 RVPVTGAIILDE--TYERCILVKGWK----GSSWSFPRGKKNKDEEDHACAIREVQEETGFDV--SKLLNKDEFIE-KIF  176 (322)
Q Consensus       106 ~v~v~g~Iv~~~--~~~kvLLvrr~~----~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v--~~l~~~~~~~~-~~~  176 (322)
                      ...++.+|+.+.  .+++|||+||..    +|+|+||+|.++.||+..++|.||..+|.+..+  .....+..+.+ .+.
T Consensus        11 ~~~~~~~vv~~~~~~~~~iLl~kR~~~g~l~GlWefP~~~~~~~e~~~~~~~~~~~~e~~~~~~~~~~~~~~~v~H~fsH   90 (142)
T d1x51a1          11 EESSATCVLEQPGALGAQILLVQRPNSGLLAGLWEFPSVTWEPSEQLQRKALLQELQRWAGPLPATHLRHLGEVVHTFSH   90 (142)
T ss_dssp             EEEEEEEEEEEECSSSEEEEEEECCCCSTTCSCEECCEEECCSSHHHHHHHHHHHHHHHSCCCCSTTCEECCCBCCBCSS
T ss_pred             EEEEEEEEEEecCCCCCEEEEEECCCCCCCCcceeeeEeeccCCcchhHHHHHHHHHHhccCcceeeeeeeccceeccCC
Confidence            334455555553  135999999965    799999999999999999888877666665433  33333333221 122


Q ss_pred             CeEEEEEEEEEeecCCCCCCCCCccceeeEEEEeccccccc
Q 020742          177 GQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA  217 (322)
Q Consensus       177 ~~~~~~~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~  217 (322)
                      ....+++|.+....+.    + ...+..+..|++++++..+
T Consensus        91 ~~~~~~v~~~~~~~~~----~-~~~~~~~~~W~~~~el~~~  126 (142)
T d1x51a1          91 IKLTYQVYGLALEGQT----P-VTTVPPGARWLTQEEFHTA  126 (142)
T ss_dssp             CEEEEEEEEEECSSCC----C-CCCCCTTEEEEEHHHHHHS
T ss_pred             cceEEEEEEEEEeCCC----c-ccccCccCEEeeHHHcccc
Confidence            2345566666433322    1 2356678999999999763